BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 537021.9.peg.409_1
         (242 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|315122046|ref|YP_004062535.1| double-strand break repair helicase AddA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495448|gb|ADR52047.1| double-strand break repair helicase AddA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 1179

 Score =  290 bits (743), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 157/218 (72%), Positives = 185/218 (84%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           M++ NS Q +S   D I+ TKS+QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL+ A
Sbjct: 1   MMHLNSSQNNSNITDWITWTKSQQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLSGA 60

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           +PS LLCLTHTK AAAEMSHRV EIIT WSHLSDE LS EITKIQG K N+SD+SKAR L
Sbjct: 61  NPSALLCLTHTKEAAAEMSHRVFEIITEWSHLSDEQLSVEITKIQGIKQNESDISKARLL 120

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           L+ ILETP GLKVQTIH+FCE++++QFPLE+NIT  F++ D +QSKK IEEAKKST+ASI
Sbjct: 121 LVKILETPNGLKVQTIHSFCESLIRQFPLESNITGDFSVLDGDQSKKPIEEAKKSTIASI 180

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
           +LD+N E K+AF +IL   ND ++E L+SDIISNR+AL
Sbjct: 181 LLDDNVEFKQAFDDILNSYNDINLEDLMSDIISNRSAL 218


>gi|218682571|ref|ZP_03530172.1| ATP-dependent UvrD family DNA helicase [Rhizobium etli CIAT 894]
          Length = 415

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 147/203 (72%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 20  IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 79

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE LS  IT+I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 80  EMSNRVFERLADWVVLDDEDLSRRITQIEGTAPDAIKLAEARRLFAKALETPGGLKIQTI 139

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   + +  L +AF  +L
Sbjct: 140 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEADSALAEAFAYVL 199

Query: 197 EISNDEDIETLISDIISNRTALK 219
           ++ ++  +E L+ DI++NR A++
Sbjct: 200 DLGDESGLENLLGDIVANRNAIR 222


>gi|222084227|ref|YP_002542753.1| double-strand break repair helicase AddA [Agrobacterium radiobacter
           K84]
 gi|221721675|gb|ACM24831.1| double-strand break repair helicase AddA [Agrobacterium radiobacter
           K84]
          Length = 1188

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 107/203 (52%), Positives = 152/203 (74%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 22  IGWTTVQQSIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 81

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV + + AW+ LSDE L A I +I+G +P+   +++AR L    LETPGGLK+QTI
Sbjct: 82  EMSNRVFDRLAAWATLSDEELKARIAEIEGAEPDLFKLAEARRLFAKALETPGGLKIQTI 141

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+++A++S LA+     + EL +AF  +L
Sbjct: 142 HAFCEALLHQFPLEANVAGHFSVLDDRAAATLLDDARRSLLAATTPQRDAELAEAFSYVL 201

Query: 197 EISNDEDIETLISDIISNRTALK 219
           ++ ++  +ETL+ DI++ R A++
Sbjct: 202 DLGDESGLETLLGDIVAKRNAIR 224


>gi|222147062|ref|YP_002548019.1| ATP-dependant DNA helicase [Agrobacterium vitis S4]
 gi|221734052|gb|ACM35015.1| ATP-dependant DNA helicase [Agrobacterium vitis S4]
          Length = 1182

 Score =  226 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 160/224 (71%), Gaps = 3/224 (1%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D I  T  +Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS++LCLT+TKAA
Sbjct: 12  DPIDWTTRQQSLASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGARPSSILCLTYTKAA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EMS+RV + +  W+ LSDE LS  I  I+ + P++  +++AR L    LETPGGLK+Q
Sbjct: 72  ASEMSNRVFDRLAEWATLSDEELSRRIETIERRPPDRMKIAEARRLFARALETPGGLKIQ 131

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A++S L +   +++  L +AF E
Sbjct: 132 TIHAFCEALLHQFPLEANVAGHFSVLDDRAASVLLADARRSLLTATAAEDDANLAEAFAE 191

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +L + ++  +E L+SDI+SNR A++    F +   R+  +E +L
Sbjct: 192 VLSLGDEFGLENLLSDIVSNRHAVR---GFLAVARRKGGVESAL 232


>gi|209551530|ref|YP_002283447.1| double-strand break repair helicase AddA [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537286|gb|ACI57221.1| double-strand break repair helicase AddA [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 1183

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 104/203 (51%), Positives = 148/203 (72%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE LS  IT+I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLADWVVLDDEDLSRRITQIEGAAPDGIKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  ++ L+ +A+++ L +   + +  L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAEALLSDARRALLTATAPEGDSTLAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
           ++ ++  +E L+ DI++NR A++
Sbjct: 197 DLGDESGLENLLGDIVANRNAIR 219


>gi|116249792|ref|YP_765630.1| ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254440|emb|CAK05514.1| putative ATP-dependent UvrD family DNA helicase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1183

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 104/203 (51%), Positives = 146/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLL+ A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLSGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE LS  IT+I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLAEWVVLDDEDLSRRITQIEGMAPDGLKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   D +  L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAVALLSDARRALLTATAPDEDSALAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + ++  +E L+ DI++NR A++
Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219


>gi|159184128|ref|NP_353063.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159139465|gb|AAK85848.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 1185

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 148/203 (72%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T + Q LASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+
Sbjct: 19  IDWTSARQRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 78

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS RV + +  W+ L D  L   IT I+GK P++  +++AR L    LETPGGLK+QTI
Sbjct: 79  EMSSRVFDRLAEWATLPDSDLKDRITTIEGKVPDRIKLAEARRLFAKALETPGGLKIQTI 138

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ EA++S L ++  +++ EL +A   +L
Sbjct: 139 HAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAELVQALAYVL 198

Query: 197 EISNDEDIETLISDIISNRTALK 219
           +++++  +E L+S II+NR+AL+
Sbjct: 199 DLADESGLEALLSAIIANRSALR 221


>gi|241206969|ref|YP_002978065.1| double-strand break repair helicase AddA [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860859|gb|ACS58526.1| double-strand break repair helicase AddA [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 1183

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 103/203 (50%), Positives = 145/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLL+ A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLSGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE L   IT+I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLAEWVVLDDEDLGRRITQIEGMAPDGLKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   D +  L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAVALLSDARRALLTATAPDEDSALSEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + ++  +E L+ DI++NR A++
Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219


>gi|86355694|ref|YP_467586.1| nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42]
 gi|45505284|gb|AAS67014.1| AddA [Rhizobium etli]
 gi|86279796|gb|ABC88859.1| probable nuclease/helicase protein, ATP dependent [Rhizobium etli
           CFN 42]
          Length = 1183

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 103/203 (50%), Positives = 144/203 (70%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE LS  I +I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLADWVVLDDEDLSRRIMQIEGTAPDALKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +        L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPVEGSALAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + ++  +E L++DI++NR A++
Sbjct: 197 NLGDESGLENLLADIVANRNAIR 219


>gi|325291476|ref|YP_004277340.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
 gi|325059329|gb|ADY63020.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
          Length = 1185

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 100/203 (49%), Positives = 146/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T   Q LASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+
Sbjct: 19  IDWTSDRQRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 78

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS RV + +  W+ L D  L   +  I+GK P++  +++AR L    LETPGGLK+QTI
Sbjct: 79  EMSSRVFDRLAEWATLPDNDLGDRVAAIEGKMPDRIKLAEARRLFAKALETPGGLKIQTI 138

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ EA++S L ++  + + +L ++   +L
Sbjct: 139 HAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEGDTDLTQSLAYVL 198

Query: 197 EISNDEDIETLISDIISNRTALK 219
           +++++  +E+L++ II+NR+AL+
Sbjct: 199 DLADESGLESLLTAIIANRSALR 221


>gi|150398434|ref|YP_001328901.1| double-strand break repair helicase AddA [Sinorhizobium medicae
           WSM419]
 gi|150029949|gb|ABR62066.1| Double-strand break repair helicase AddA [Sinorhizobium medicae
           WSM419]
          Length = 1189

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 103/200 (51%), Positives = 141/200 (70%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T   Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+EMS
Sbjct: 20  TTERQALASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMS 79

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +RV E +  W+ L D  L   I  I+GK+P    + +AR L    LETPGGLK+QTIHAF
Sbjct: 80  NRVFEKLAEWATLDDAALEKRIEAIEGKRPATGKIQEARRLFARALETPGGLKIQTIHAF 139

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +    N+ EL  AF  +LE++
Sbjct: 140 CEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAANDRELAAAFATVLELA 199

Query: 200 NDEDIETLISDIISNRTALK 219
           +D  +E L++ I++NR  ++
Sbjct: 200 DDTGLEKLLAAIVANRAQIQ 219


>gi|227823893|ref|YP_002827866.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium
           fredii NGR234]
 gi|227342895|gb|ACP27113.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium
           fredii NGR234]
          Length = 1189

 Score =  213 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/200 (49%), Positives = 141/200 (70%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T   Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+EMS
Sbjct: 20  TTERQSLASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMS 79

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +R+ E +  W+ L D  L   I  I+GK+P  + + +AR L    LETPGGLK+QTIHAF
Sbjct: 80  NRIFERLAEWATLDDAALEKRIETIEGKRPPLAKIHEARRLFAKALETPGGLKIQTIHAF 139

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            EA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L++   +   EL +AF  +L+++
Sbjct: 140 SEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLSATAAEGETELAEAFATVLDLA 199

Query: 200 NDEDIETLISDIISNRTALK 219
           +D  +E L+  I++NR  ++
Sbjct: 200 DDTGLEKLLQAIVANRAPIQ 219


>gi|307322014|ref|ZP_07601393.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
           AK83]
 gi|306892352|gb|EFN23159.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
           AK83]
          Length = 1189

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 100/200 (50%), Positives = 142/200 (71%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T   Q LASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+EMS
Sbjct: 20  TTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMS 79

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +RV E +  W+ L D  L   I  I+GK+P  + + +AR L    LETPGGLK+QTIHAF
Sbjct: 80  NRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTIHAF 139

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +    ++ EL +AF  +L+++
Sbjct: 140 CEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAASDGELAEAFATVLDLA 199

Query: 200 NDEDIETLISDIISNRTALK 219
           +D  +E L++ I++NR  ++
Sbjct: 200 DDTGLEKLLAAIVANRAPIQ 219


>gi|15963787|ref|NP_384140.1| putative ATP-dependent nuclease/helicase protein [Sinorhizobium
           meliloti 1021]
 gi|307310975|ref|ZP_07590620.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
           BL225C]
 gi|15072962|emb|CAC41421.1| ATP-dependent nuclease / helicase [Sinorhizobium meliloti 1021]
 gi|306899655|gb|EFN30282.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
           BL225C]
          Length = 1189

 Score =  209 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 100/200 (50%), Positives = 142/200 (71%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T   Q LASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+EMS
Sbjct: 20  TTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMS 79

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +RV E +  W+ L D  L   I  I+GK+P  + + +AR L    LETPGGLK+QTIHAF
Sbjct: 80  NRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTIHAF 139

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +    ++ EL +AF  +L+++
Sbjct: 140 CEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAASDGELAEAFATVLDLA 199

Query: 200 NDEDIETLISDIISNRTALK 219
           +D  +E L++ I++NR  ++
Sbjct: 200 DDTGLEKLLAAIVANRAPIQ 219


>gi|327192794|gb|EGE59722.1| putative ATP-dependent exonuclease V protein [Rhizobium etli
           CNPAF512]
          Length = 1183

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 102/203 (50%), Positives = 145/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L D+ LS  I +I+G  P++  +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLADWVVLDDDDLSRRIMQIEGTAPDRIKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   +    L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEEGSALAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + ++  +E L+ DI++NR A++
Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219


>gi|190889666|ref|YP_001976208.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
           domains [Rhizobium etli CIAT 652]
 gi|190694945|gb|ACE89030.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
           domains [Rhizobium etli CIAT 652]
          Length = 1183

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 102/203 (50%), Positives = 145/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L D+ LS  I +I+G  P++  +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLADWVVLDDDDLSRRIMQIEGTAPDRIKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   +    L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEEGSALAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + ++  +E L+ DI++NR A++
Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219


>gi|110635907|ref|YP_676115.1| DNA helicase/exodeoxyribonuclease V, subunit A [Mesorhizobium sp.
           BNC1]
 gi|110286891|gb|ABG64950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Chelativorans sp.
           BNC1]
          Length = 1177

 Score =  206 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/196 (52%), Positives = 142/196 (72%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q LASDP+ SAWVSANAGSGKTH+L  RV+RLLL    PS +LCLT+T+AAAA M++RV 
Sbjct: 15  QALASDPSLSAWVSANAGSGKTHVLASRVIRLLLKGTDPSKILCLTYTRAAAANMANRVF 74

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           E +  WS LSD+ L+ E+ K++G++P+   + +AR L    LETPGGLK+QTIHAFCEAI
Sbjct: 75  ENLAGWSLLSDDDLAEEVAKLEGRRPSSEKLRRARQLFARALETPGGLKIQTIHAFCEAI 134

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + QFPLEANI  HF + DE+  + L  EA++  L SI  + +  L++AF E+LE   +  
Sbjct: 135 LHQFPLEANIAGHFDLLDEQMEEALFAEARRDLLTSIAAERDGPLEEAFAEVLERGGESG 194

Query: 204 IETLISDIISNRTALK 219
           ++TL+++I++ R  L+
Sbjct: 195 LQTLLTEIVARRDELR 210


>gi|260463224|ref|ZP_05811426.1| double-strand break repair helicase AddA [Mesorhizobium
           opportunistum WSM2075]
 gi|259031074|gb|EEW32348.1| double-strand break repair helicase AddA [Mesorhizobium
           opportunistum WSM2075]
          Length = 1166

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 135/202 (66%), Gaps = 3/202 (1%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S T + Q  A+DP  SAWVSANAGSGKTH+L QRV+RLLL    PS +LCLT+T+AAAA 
Sbjct: 9   SDTATSQARAADPQNSAWVSANAGSGKTHVLAQRVIRLLLNGTDPSKILCLTYTRAAAAN 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS+RV   ++ W+ L D  L+A I  ++G++P++  M +AR L    LETPGGLK+QTIH
Sbjct: 69  MSNRVFSTLSEWTSLGDADLAARIEALEGRRPDRDTMRRARRLFAEALETPGGLKIQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE+++ QFPLEANI SHF + D +    L   A++  +++     + +L +AF  +LE
Sbjct: 129 AFCESVLHQFPLEANIPSHFEMLDSQMEASLFAAARREMISAA---GDADLTEAFATVLE 185

Query: 198 ISNDEDIETLISDIISNRTALK 219
              +  ++ L+ +I+  R  L+
Sbjct: 186 RGGEAGLDALLGEIVRKRDGLR 207


>gi|13474239|ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099]
 gi|14024991|dbj|BAB51593.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099]
          Length = 1170

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 134/202 (66%), Gaps = 1/202 (0%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S T + Q  A+DP  SAWVSANAGSGKTH+L QRV+RLLL    PS +LCLT+T+AAAA 
Sbjct: 9   SDTANSQARAADPQNSAWVSANAGSGKTHVLAQRVIRLLLNGTDPSKILCLTYTRAAAAN 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS+RV   ++ W+ L D  L+A+I  ++G++P++  M +AR L    LETPGGLK+QTIH
Sbjct: 69  MSNRVFSTLSEWTVLGDAELAAKIEALEGRRPDRDTMRRARRLFAEALETPGGLKIQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE+++ QFPLEANI +HF + D +    L   A++  ++      N +L  AF  +LE
Sbjct: 129 AFCESVLHQFPLEANIPAHFEMLDGQMEASLFAAARREMISGTAA-GNPDLADAFATVLE 187

Query: 198 ISNDEDIETLISDIISNRTALK 219
              +  ++ L+ +I+  R  L+
Sbjct: 188 RGGEAGLDALLGEIVRKRDGLR 209


>gi|254718138|ref|ZP_05179949.1| UvrD/REP helicase [Brucella sp. 83/13]
 gi|265983091|ref|ZP_06095826.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
 gi|264661683|gb|EEZ31944.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
          Length = 325

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/210 (44%), Positives = 136/210 (64%), Gaps = 7/210 (3%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            ETID        Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+
Sbjct: 9   PETID-------AQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTY 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TKAAAA M +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGG
Sbjct: 62  TKAAAAVMQNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGG 121

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           LK+QTIHAFCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  
Sbjct: 122 LKIQTIHAFCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAA 181

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKL 220
           AF ++L+ + +  +++L+ + +  R  L+L
Sbjct: 182 AFADVLQAAGETGLQSLLDEAVGRRNGLQL 211


>gi|256112426|ref|ZP_05453347.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|265993864|ref|ZP_06106421.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|262764845|gb|EEZ10766.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
          Length = 710

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 134/203 (66%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA 
Sbjct: 9   PETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAV 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIH
Sbjct: 69  MQNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+
Sbjct: 129 AFCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQ 188

Query: 198 ISNDEDIETLISDIISNRTALKL 220
            + +  +++L+ + +  R  L+L
Sbjct: 189 AAGETGLQSLLDEAVGRRNGLQL 211


>gi|254696352|ref|ZP_05158180.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260760724|ref|ZP_05873067.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671156|gb|EEX57977.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 713

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 133/203 (65%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA 
Sbjct: 9   PETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAV 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIH
Sbjct: 69  MQNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF  +L+
Sbjct: 129 AFCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQ 188

Query: 198 ISNDEDIETLISDIISNRTALKL 220
            + +  +++L+ + +  R  L+L
Sbjct: 189 AAGETGLQSLLDEAVGRRNGLQL 211


>gi|319780204|ref|YP_004139680.1| double-strand break repair helicase AddA [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166092|gb|ADV09630.1| double-strand break repair helicase AddA [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 1172

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/202 (45%), Positives = 134/202 (66%), Gaps = 1/202 (0%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S T + Q  A+DP  SAWVSANAGSGKTH+L QRV+RLLL    PS +LCLT+T+AAAA 
Sbjct: 9   SDTATSQARAADPGNSAWVSANAGSGKTHVLAQRVIRLLLRGTDPSKILCLTYTRAAAAN 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS+RV   ++ W+ L D  L+A++  ++G++P+   M +AR L    LETPGGLK+QTIH
Sbjct: 69  MSNRVFSTLSEWTTLGDVDLAAKVEALEGRRPDLETMRRARRLFAEALETPGGLKIQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE+++ QFPLEANI +HF + D +    L   A++  ++      + +L +AF  IL+
Sbjct: 129 AFCESVLHQFPLEANIPAHFEMLDGQMEASLFAAARREMISGTSA-GDRDLAEAFASILD 187

Query: 198 ISNDEDIETLISDIISNRTALK 219
              +  ++ L+ +I+  R  L+
Sbjct: 188 RGGEAGLDALLGEIVRKRDGLR 209


>gi|163757508|ref|ZP_02164597.1| probable nuclease/helicase protein, ATP dependent [Hoeflea
           phototrophica DFL-43]
 gi|162285010|gb|EDQ35292.1| probable nuclease/helicase protein, ATP dependent [Hoeflea
           phototrophica DFL-43]
          Length = 1196

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 93/201 (46%), Positives = 138/201 (68%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D+ISQT   Q  A+ P  SAWVSANAGSGKTH+L +RV+RLLL  A PS +LCLT+TKAA
Sbjct: 10  DVISQTTLRQNRAATPQLSAWVSANAGSGKTHVLARRVIRLLLRGARPSAILCLTYTKAA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEMS+RV + +  W  L D+ L+ ++T+++G       +  AR L  T LETPGGLK+Q
Sbjct: 70  AAEMSNRVFKTLADWVLLDDQALAEKLTELEGAPTEPRTLILARRLFATALETPGGLKIQ 129

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFCEA++ +FPLEANI  HF++ D++++ +L+ EA++  +++   + +  L  A  +
Sbjct: 130 TIHAFCEAVLHRFPLEANIPGHFSVLDDQKAAELLAEARRELMSAQAFEADPALADAVTQ 189

Query: 195 ILEISNDEDIETLISDIISNR 215
            L+I  +   + L++ + + R
Sbjct: 190 ALDIGGESGFDKLLAGLYARR 210


>gi|254470933|ref|ZP_05084336.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062]
 gi|211960075|gb|EEA95272.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062]
          Length = 1156

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 95/205 (46%), Positives = 139/205 (67%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D+ ++T   Q  A+ P  SAWVSANAGSGKT +L +RV+RLLL+   PS +LCLT TKA
Sbjct: 1   MDIPAKTLDSQQRAAHPENSAWVSANAGSGKTFVLARRVVRLLLSGTDPSRILCLTFTKA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM+ RV + +  W+ LSD  L+AEI  I+G+  +   ++ AR L    LETPGGLK+
Sbjct: 61  AAAEMATRVFDSLAKWTQLSDAELAAEIEDIEGRPTSPKQLANARRLFAKALETPGGLKI 120

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           QTIHAFCEA++ QFPLEAN+  HF++ D+  +++L+ EA+ S L    ++   ++  A  
Sbjct: 121 QTIHAFCEALLHQFPLEANVAGHFSVLDDRLAEELLNEARASILHRAEIEPESDIGSALS 180

Query: 194 EILEISNDEDIETLISDIISNRTAL 218
           +++E+  D  +E  +S++IS R A 
Sbjct: 181 QLIELLPDSGVEKALSELISRRDAF 205


>gi|304392405|ref|ZP_07374346.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130]
 gi|303295509|gb|EFL89868.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130]
          Length = 1195

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/203 (48%), Positives = 136/203 (66%), Gaps = 3/203 (1%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           QT  EQ  AS P  SAWVSANAGSGKT++L QRV+RLLLA   PS +LCLT TKAAA  M
Sbjct: 11  QTSLEQAKASAPDHSAWVSANAGSGKTYVLTQRVVRLLLAGTDPSRILCLTFTKAAAGVM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGLKVQT 135
           S+RV E + +++ L D+ L   + +++G   K P++  + +AR L    LETPGGLK+QT
Sbjct: 71  SNRVFETLASFASLDDDALKTALVELEGPNCKAPSREKIQRARTLFARALETPGGLKIQT 130

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFCE+++ QFPLEAN+  +F+  DE Q K+++E+A++  +         +L KAF+ I
Sbjct: 131 IHAFCESLLHQFPLEANVPGNFSALDEAQGKQMLEQARRDVIVDADAAPESDLGKAFHAI 190

Query: 196 LEISNDEDIETLISDIISNRTAL 218
           L+ + D  IE  +S+ IS R  L
Sbjct: 191 LDAATDHAIEQGLSEAISKREVL 213


>gi|23502951|ref|NP_699078.1| UvrD/Rep family helicase [Brucella suis 1330]
 gi|161620015|ref|YP_001593902.1| double-strand break repair helicase AddA [Brucella canis ATCC
           23365]
 gi|260567425|ref|ZP_05837895.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|23348986|gb|AAN30993.1| helicase, UvrD/Rep family [Brucella suis 1330]
 gi|161336826|gb|ABX63131.1| double-strand break repair helicase AddA [Brucella canis ATCC
           23365]
 gi|260156943|gb|EEW92023.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
          Length = 1180

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|256370501|ref|YP_003108012.1| double-strand break repair helicase AddA [Brucella microti CCM
           4915]
 gi|256000664|gb|ACU49063.1| double-strand break repair helicase AddA [Brucella microti CCM
           4915]
          Length = 1180

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|254705105|ref|ZP_05166933.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
           686]
 gi|261755810|ref|ZP_05999519.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
           686]
 gi|261745563|gb|EEY33489.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
           686]
          Length = 1180

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|306842786|ref|ZP_07475427.1| double-strand break repair helicase AddA [Brucella sp. BO2]
 gi|306287059|gb|EFM58567.1| double-strand break repair helicase AddA [Brucella sp. BO2]
          Length = 1180

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|148560369|ref|YP_001259904.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840]
 gi|148371626|gb|ABQ61605.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840]
          Length = 1180

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|306837652|ref|ZP_07470521.1| double-strand break repair helicase AddA [Brucella sp. NF 2653]
 gi|306407210|gb|EFM63420.1| double-strand break repair helicase AddA [Brucella sp. NF 2653]
          Length = 1180

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|254713494|ref|ZP_05175305.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
 gi|254716150|ref|ZP_05177961.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261217923|ref|ZP_05932204.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261321227|ref|ZP_05960424.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
 gi|260923012|gb|EEX89580.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261293917|gb|EEX97413.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
          Length = 1180

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 135/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL +  PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLESTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|225853531|ref|YP_002733764.1| double-strand break repair helicase AddA [Brucella melitensis ATCC
           23457]
 gi|254700733|ref|ZP_05162561.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
           513]
 gi|254709079|ref|ZP_05170890.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           B2/94]
 gi|256030604|ref|ZP_05444218.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M292/94/1]
 gi|256045706|ref|ZP_05448584.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256262985|ref|ZP_05465517.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563008|ref|ZP_05833494.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|261316580|ref|ZP_05955777.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           B2/94]
 gi|261751245|ref|ZP_05994954.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
           513]
 gi|265987652|ref|ZP_06100209.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M292/94/1]
 gi|265992127|ref|ZP_06104684.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
           str. Rev.1]
 gi|225641896|gb|ACO01810.1| double-strand break repair helicase AddA [Brucella melitensis ATCC
           23457]
 gi|260153024|gb|EEW88116.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|261295803|gb|EEX99299.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           B2/94]
 gi|261740998|gb|EEY28924.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
           513]
 gi|263003193|gb|EEZ15486.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092858|gb|EEZ17033.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|264659849|gb|EEZ30110.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M292/94/1]
 gi|326410100|gb|ADZ67165.1| double-strand break repair helicase AddA [Brucella melitensis M28]
 gi|326539817|gb|ADZ88032.1| double-strand break repair helicase AddA [Brucella melitensis
           M5-90]
          Length = 1180

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|294851330|ref|ZP_06792003.1| double-strand break repair helicase AddA [Brucella sp. NVSL
           07-0026]
 gi|294819919|gb|EFG36918.1| double-strand break repair helicase AddA [Brucella sp. NVSL
           07-0026]
          Length = 1180

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|254694724|ref|ZP_05156552.1| double-strand break repair helicase AddA [Brucella abortus bv. 3
           str. Tulya]
 gi|261215053|ref|ZP_05929334.1| double-strand break repair helicase AddA [Brucella abortus bv. 3
           str. Tulya]
 gi|260916660|gb|EEX83521.1| double-strand break repair helicase AddA [Brucella abortus bv. 3
           str. Tulya]
          Length = 1180

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|225626478|ref|ZP_03784517.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo]
 gi|256158600|ref|ZP_05456490.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
 gi|256254011|ref|ZP_05459547.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|260169510|ref|ZP_05756321.1| double-strand break repair helicase AddA [Brucella sp. F5/99]
 gi|261221152|ref|ZP_05935433.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|261759038|ref|ZP_06002747.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|265997112|ref|ZP_06109669.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
 gi|225618135|gb|EEH15178.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo]
 gi|260919736|gb|EEX86389.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|261739022|gb|EEY27018.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|262551580|gb|EEZ07570.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
          Length = 1180

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|256060066|ref|ZP_05450248.1| ATP-dependent nuclease subunit A [Brucella neotomae 5K33]
 gi|261324043|ref|ZP_05963240.1| double-strand break repair helicase AddA [Brucella neotomae 5K33]
 gi|261300023|gb|EEY03520.1| double-strand break repair helicase AddA [Brucella neotomae 5K33]
          Length = 1180

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFIRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|62290945|ref|YP_222738.1| UvrD/Rep family helicase [Brucella abortus bv. 1 str. 9-941]
 gi|82700856|ref|YP_415430.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308]
 gi|189025157|ref|YP_001935925.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237816450|ref|ZP_04595443.1| double-strand break repair helicase AddA [Brucella abortus str.
           2308 A]
 gi|254690236|ref|ZP_05153490.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|254731267|ref|ZP_05189845.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|256258489|ref|ZP_05464025.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|260546208|ref|ZP_05821948.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260755777|ref|ZP_05868125.1| double-strand break repair helicase AddA [Brucella abortus bv. 6
           str. 870]
 gi|260759000|ref|ZP_05871348.1| double-strand break repair helicase AddA [Brucella abortus bv. 4
           str. 292]
 gi|260884801|ref|ZP_05896415.1| double-strand break repair helicase AddA [Brucella abortus bv. 9
           str. C68]
 gi|297247330|ref|ZP_06931048.1| double-strand break repair helicase AddA [Brucella abortus bv. 5
           str. B3196]
 gi|62197077|gb|AAX75377.1| helicase, UvrD/Rep family [Brucella abortus bv. 1 str. 9-941]
 gi|82616957|emb|CAJ12061.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella
           melitensis biovar Abortus 2308]
 gi|189020729|gb|ACD73451.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237788517|gb|EEP62732.1| double-strand break repair helicase AddA [Brucella abortus str.
           2308 A]
 gi|260096315|gb|EEW80191.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260669318|gb|EEX56258.1| double-strand break repair helicase AddA [Brucella abortus bv. 4
           str. 292]
 gi|260675885|gb|EEX62706.1| double-strand break repair helicase AddA [Brucella abortus bv. 6
           str. 870]
 gi|260874329|gb|EEX81398.1| double-strand break repair helicase AddA [Brucella abortus bv. 9
           str. C68]
 gi|297174499|gb|EFH33846.1| double-strand break repair helicase AddA [Brucella abortus bv. 5
           str. B3196]
          Length = 1180

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 133/202 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF  +L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|254707379|ref|ZP_05169207.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M163/99/10]
 gi|261314862|ref|ZP_05954059.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M163/99/10]
 gi|261303888|gb|EEY07385.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M163/99/10]
          Length = 1180

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 133/202 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF  +L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|163844120|ref|YP_001628524.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445]
 gi|163674843|gb|ABY38954.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445]
          Length = 1180

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 90/202 (44%), Positives = 133/202 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WV ANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVPANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|306843520|ref|ZP_07476121.1| double-strand break repair helicase AddA [Brucella sp. BO1]
 gi|306276211|gb|EFM57911.1| double-strand break repair helicase AddA [Brucella sp. BO1]
          Length = 1180

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 90/202 (44%), Positives = 133/202 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L D  L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDAALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|17988306|ref|NP_540940.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 1 str.
           16M]
 gi|17984079|gb|AAL53204.1| ATP-dependent nuclease subunit a [Brucella melitensis bv. 1 str.
           16M]
          Length = 1180

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 89/202 (44%), Positives = 134/202 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    L+TPGG+K+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARVASARRLFARALKTPGGMKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + +  +++L+ + +  R  L+L
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211


>gi|114705059|ref|ZP_01437967.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506]
 gi|114539844|gb|EAU42964.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506]
          Length = 1211

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 93/205 (45%), Positives = 135/205 (65%), Gaps = 5/205 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +Q +A+DP  S +VSANAG+GKTH+L +RV+RLLLA   PS +LCLT TKAAAAEMS
Sbjct: 10  TAEQQRIAADPNLSVFVSANAGAGKTHVLTERVIRLLLAGFDPSKILCLTFTKAAAAEMS 69

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +RV   + AW+ +  E L+ EI K++G  P    + +AR L    LETPGGLK+QTIHAF
Sbjct: 70  NRVFARLGAWAVMDGEKLADEIAKLEGHTPKPERIDQARQLFARALETPGGLKIQTIHAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-----IMLDNNEELKKAFYE 194
           CEAI+ QFPLEAN+  HF + D+ +S+ ++ E ++  +          +  +EL++AF E
Sbjct: 130 CEAILHQFPLEANVAGHFEVLDDGESRLMLGEVRRRLVTGAAALAAGREAADELREAFAE 189

Query: 195 ILEISNDEDIETLISDIISNRTALK 219
            L I  +   + L+++I+  R  ++
Sbjct: 190 ALAIGGEFGFDGLLTEIVQKRDDIR 214


>gi|328545810|ref|YP_004305919.1| Double-strand break repair helicase AddA [Polymorphum gilvum
           SL003B-26A1]
 gi|326415550|gb|ADZ72613.1| Double-strand break repair helicase AddA [Polymorphum gilvum
           SL003B-26A1]
          Length = 1165

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 124/202 (61%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++T   Q LAS P  SAWVSANAGSGKT +L +RV+RLLL    PS LLCLT TKAAAAE
Sbjct: 8   ARTLERQDLASRPEASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRLLCLTFTKAAAAE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV  I+  W  L D  L+ EI  + G++P    +  AR L    LETPGGLK+QTIH
Sbjct: 68  MATRVFRILGQWVALDDAALAREIEMLDGRRPGADRLKAARRLFAKALETPGGLKIQTIH 127

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCEA++ QFPLEAN+  HF + D+    +L+ E +   L     D +  L  A   ++ 
Sbjct: 128 AFCEALLHQFPLEANVAGHFTVLDDRVGAELMAEERARVLHRAESDPHSPLGAALGSLIR 187

Query: 198 ISNDEDIETLISDIISNRTALK 219
           +  D  +E  + ++I  R AL+
Sbjct: 188 LMPDATVEAALGELIGRRDALR 209


>gi|90420586|ref|ZP_01228493.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335314|gb|EAS49067.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1209

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/207 (45%), Positives = 133/207 (64%), Gaps = 4/207 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I++T   Q +A+DP RS +VSANAGSGKTH+L +RV+RLLL+   PS +LCLT+TKAAAA
Sbjct: 7   IAETTRLQAIAADPERSVFVSANAGSGKTHVLTERVVRLLLSKVEPSKILCLTYTKAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS RV   +  W+   D  L+AEI ++ G+ P    M  AR L    LETPGGLK+QTI
Sbjct: 67  EMSGRVFARLAKWATAEDADLAAEIARLDGRPPTPERMIVARRLFAEALETPGGLKIQTI 126

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEAI+ QFPLEAN+  HF + D+ +S  L+ EA++  +        +E   A  +  
Sbjct: 127 HAFCEAILHQFPLEANVPGHFEVLDDAESMALLAEARRLLITGAARKAPDEAASALADAF 186

Query: 197 E----ISNDEDIETLISDIISNRTALK 219
                ++ +  ++ LI +I++ R A++
Sbjct: 187 ASALTLAGEWGLDQLIGEIVNRRDAIR 213


>gi|254502806|ref|ZP_05114957.1| double-strand break repair helicase AddA [Labrenzia alexandrii
           DFL-11]
 gi|222438877|gb|EEE45556.1| double-strand break repair helicase AddA [Labrenzia alexandrii
           DFL-11]
          Length = 1180

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 131/200 (65%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+  Q LAS P  SAWVSANAGSGKT +L +RV+RLLL    PS +L LT TKAAAAEM+
Sbjct: 19  TRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 78

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +I+  W  + D  L+ E+ +I+G+ P+ + ++ AR L    LETPGGLK+QTIH F
Sbjct: 79  TRVFKILGTWVTMDDADLAKELFEIEGRHPDAARIAMARRLFARALETPGGLKIQTIHGF 138

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CEA++ QFPLEAN+  HF + D+  + +L+ EA+ S L    ++ +    +A   ++++ 
Sbjct: 139 CEALLHQFPLEANVAGHFNVLDDRIAAELMAEARASVLHKAEMEPDSPFGQALASVIDLM 198

Query: 200 NDEDIETLISDIISNRTALK 219
           +D   +  + ++I NR A +
Sbjct: 199 SDGGAQKALDELIQNRDAFR 218


>gi|323138129|ref|ZP_08073202.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
           49242]
 gi|322396591|gb|EFX99119.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
           49242]
          Length = 1145

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 92/201 (45%), Positives = 130/201 (64%), Gaps = 1/201 (0%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S TK+ Q  ASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAAA 
Sbjct: 8   SLTKNAQRDASDPAASAWVSANAGSGKTHVLSQRVVRLLLARVPPSRILCLTYTKAAAAN 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS R+ +++  W+ L DE L  EI      +P++++++ AR L    +ETPGGLK+QTIH
Sbjct: 68  MSARIFDVLARWALLDDESLIREIEATGADRPSRAELNVARCLFARAVETPGGLKIQTIH 127

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE ++  FP EAN  + F + D+ +  +L+E +K+  L   M D+   L+ A   +  
Sbjct: 128 AFCEKLLHHFPFEANAPAGFRVIDDMERAELLEASKRRALDCAMRDSG-ALRHALEHVAR 186

Query: 198 ISNDEDIETLISDIISNRTAL 218
            ++    + L  +++ NR AL
Sbjct: 187 ETSGFGFDNLCDELLGNRDAL 207


>gi|239833145|ref|ZP_04681474.1| double-strand break repair helicase AddA [Ochrobactrum intermedium
           LMG 3301]
 gi|239825412|gb|EEQ96980.1| double-strand break repair helicase AddA [Ochrobactrum intermedium
           LMG 3301]
          Length = 1195

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 92/201 (45%), Positives = 133/201 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP  S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 23  ETLFAQGRAADPAASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 82

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  +  ++G++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 83  QNRVFMRLSEWAVLPDEELTERLKSLEGRRPGDARLAAARRLFARALETPGGLKIQTIHA 142

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA++  L +     + EL  AF ++L+ 
Sbjct: 143 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDMELAAAFADVLQA 202

Query: 199 SNDEDIETLISDIISNRTALK 219
           + +  +++L+ + +S R  L+
Sbjct: 203 AGEMGLQSLLEEAVSRRNGLQ 223


>gi|153008153|ref|YP_001369368.1| double-strand break repair helicase AddA [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560041|gb|ABS13539.1| Double-strand break repair helicase AddA [Ochrobactrum anthropi
           ATCC 49188]
          Length = 1180

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 92/201 (45%), Positives = 134/201 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A++P  S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETLRAQSNAANPAASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  +  ++G++PN + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEELAERLKSLEGRRPNDARLAAARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA++  L +     + +L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDIDLAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALK 219
           S +  +++L+ + +S R  L+
Sbjct: 190 SGEMGLQSLLDEAVSRRNGLQ 210


>gi|118593731|ref|ZP_01551100.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614]
 gi|118433641|gb|EAV40304.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614]
          Length = 1178

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 88/200 (44%), Positives = 130/200 (65%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+  Q LAS P  SAWVSANAGSGKT +L +RV+RLLL    PS +L LT TKAAAAEM+
Sbjct: 18  TRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 77

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +I+  W    DE L+AE+  I+G+KP+ + ++ AR L    LETPGGLK+QTIH F
Sbjct: 78  TRVFKILGEWVTKDDEALAAELQDIEGRKPDAARLAMARRLFARALETPGGLKIQTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE+++ QFPLEAN+  HFA+ D+  + +L+  ++ + L     +      +A   ++++ 
Sbjct: 138 CESLLHQFPLEANVAGHFAVLDDRVAAELMAASRATVLHVAETEPESAFGRALASVIDLM 197

Query: 200 NDEDIETLISDIISNRTALK 219
           +D   +  + ++I +R A +
Sbjct: 198 SDGGAQKALDELIQSRDAFR 217


>gi|296448609|ref|ZP_06890479.1| double-strand break repair helicase AddA [Methylosinus
           trichosporium OB3b]
 gi|296253881|gb|EFH01038.1| double-strand break repair helicase AddA [Methylosinus
           trichosporium OB3b]
          Length = 1145

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 134/196 (68%), Gaps = 1/196 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ +Q +ASDP  SAWVSA+AGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAAA M+
Sbjct: 11  TREKQRIASDPGLSAWVSAHAGSGKTHVLSQRVVRLLLAGASPSHILCLTYTKAAAANMA 70

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +I+  W+ L DE L+A I      +P  +D+++AR L    +ETPGGLK+QTIHAF
Sbjct: 71  ARIFDILAGWALLDDEALAAAIMATGAPRPFPADLARARKLFAHAVETPGGLKIQTIHAF 130

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++  FP EAN+++ F + D+ +  +L+E A+++TLA   LD    L+ A  ++  + 
Sbjct: 131 CERLLHLFPFEANVSASFRVLDDLERAELLERARRNTLARAALDGG-ALQGALAKLSRLC 189

Query: 200 NDEDIETLISDIISNR 215
           +    + LI +++  R
Sbjct: 190 SGGGFDDLIRELLGRR 205


>gi|307942842|ref|ZP_07658187.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4]
 gi|307773638|gb|EFO32854.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4]
          Length = 1174

 Score =  176 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 91/200 (45%), Positives = 125/200 (62%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+  Q  AS P  SAWVSANAGSGKT +L +RV+RLLL    PS +L LT TKAAAAEM+
Sbjct: 10  TRERQDRASQPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 69

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +I+  W    D+ L+ E+ +I+G+ P+   ++ AR L    LETPGGLK+QTIH F
Sbjct: 70  TRVFKILGEWVTKDDKDLADELEEIEGRTPDAKRVAFARRLFAEALETPGGLKIQTIHGF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CEA++ QFPLEAN+  HF + D+    +L+ EA+   L     + N EL  A   ++ + 
Sbjct: 130 CEALLHQFPLEANVAGHFQVLDDRIGAELMAEARGGVLHLAETNPNSELGNALNTVIGLM 189

Query: 200 NDEDIETLISDIISNRTALK 219
            D   E  + ++I NR  L+
Sbjct: 190 ADGTAEKALDELIQNRDDLR 209


>gi|319406427|emb|CBI80067.1| ATP-dependent nuclease subunit A [Bartonella sp. 1-1C]
          Length = 1152

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DPT S WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T AAA+ M  R+ 
Sbjct: 14  QAKATDPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             ++ WS L D+ L   ++K++ K  N   ++ AR L    LETPGGLK+QT HAFCE++
Sbjct: 74  RTLSNWSGLDDKQLQTILSKLENKPVNTQKLANARQLFARALETPGGLKIQTFHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + QFPLEANI SHF + D+   KKL+++A++  L  I  D    LK+ F
Sbjct: 134 LHQFPLEANIASHFELLDDINRKKLLQQARRKLL--IHRDAQLALKELF 180


>gi|319403513|emb|CBI77092.1| ATP-dependent nuclease subunit A [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 1152

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DPT S WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T AAA+ M  R+ 
Sbjct: 14  QAKATDPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             ++ WS L D+ L   ++K++ K  N   ++ AR L    LETPGGLK+QT HAFCE++
Sbjct: 74  RTLSNWSGLDDKQLQTILSKLENKPVNTQKLANARQLFARALETPGGLKIQTFHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + QFPLEANI SHF + D+   KKL+++A++  L  I  D    LK+ F
Sbjct: 134 LHQFPLEANIASHFELLDDINRKKLLQQARRKLL--IHRDAQLALKELF 180


>gi|188584140|ref|YP_001927585.1| double-strand break repair helicase AddA [Methylobacterium populi
           BJ001]
 gi|179347638|gb|ACB83050.1| double-strand break repair helicase AddA [Methylobacterium populi
           BJ001]
          Length = 1147

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 82/173 (47%), Positives = 112/173 (64%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+ ++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELIELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           CE ++  FP EAN+ + F + D+ QS++  E    + LA   L N++ L  AF
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAFLGNDQTLSDAF 186


>gi|254563798|ref|YP_003070893.1| helicase-exonuclease type V protein family [Methylobacterium
           extorquens DM4]
 gi|254271076|emb|CAX27083.1| putative helicase-exonuclease type V protein family
           [Methylobacterium extorquens DM4]
          Length = 1147

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 82/173 (47%), Positives = 112/173 (64%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+T++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           CE ++  FP EAN+ + F + D+ QS++  E    + LA  +L  N+ L  A 
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDAL 186


>gi|240141289|ref|YP_002965769.1| putative helicase-exonuclease type V protein family
           [Methylobacterium extorquens AM1]
 gi|240011266|gb|ACS42492.1| putative helicase-exonuclease type V protein family
           [Methylobacterium extorquens AM1]
          Length = 1147

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 82/173 (47%), Positives = 112/173 (64%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+T++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           CE ++  FP EAN+ + F + D+ QS++  E    + LA  +L  N+ L  A 
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDAL 186


>gi|218532781|ref|YP_002423597.1| double-strand break repair helicase AddA [Methylobacterium
           chloromethanicum CM4]
 gi|218525084|gb|ACK85669.1| double-strand break repair helicase AddA [Methylobacterium
           chloromethanicum CM4]
          Length = 1147

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 82/173 (47%), Positives = 112/173 (64%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+T++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           CE ++  FP EAN+ + F + D+ QS++  E    + LA  +L  N+ L  A 
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDAL 186


>gi|163853836|ref|YP_001641879.1| double-strand break repair helicase AddA [Methylobacterium
           extorquens PA1]
 gi|163665441|gb|ABY32808.1| double-strand break repair helicase AddA [Methylobacterium
           extorquens PA1]
          Length = 1147

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 82/173 (47%), Positives = 112/173 (64%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+T++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           CE ++  FP EAN+ + F + D+ QS++  E    + LA  +L  N+ L  A 
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDAL 186


>gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris
           BL2]
 gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris
           BL2]
          Length = 1151

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/201 (45%), Positives = 117/201 (58%), Gaps = 1/201 (0%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           QT  +Q  ASDP  S WVSANAGSGKTH+L QRV+RLLL    PS +LCLT TKAAAA M
Sbjct: 9   QTLQKQREASDPAASVWVSANAGSGKTHVLAQRVVRLLLQGTPPSKILCLTFTKAAAANM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           S RV   +  W+ L D  L   I       P+  +M +AR L    +ETPGGLK+QTIHA
Sbjct: 69  SMRVFNTLARWTALDDAELRRAIVATGAPSPDWREMREARKLFARTVETPGGLKIQTIHA 128

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCE ++  FP EAN  S F +ADEE+  +L+  A+   L S   + + ELK     +   
Sbjct: 129 FCERLLHLFPFEANAPSRFEVADEERQGELLARARNDVLGSAA-EADHELKAIVDRVAGE 187

Query: 199 SNDEDIETLISDIISNRTALK 219
            ++    TL+   +  R  L+
Sbjct: 188 CSEYGFATLLEQALRLRARLR 208


>gi|121601832|ref|YP_989604.1| double-strand break repair helicase AddA [Bartonella bacilliformis
           KC583]
 gi|120614009|gb|ABM44610.1| double-strand break repair helicase AddA [Bartonella bacilliformis
           KC583]
          Length = 1155

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 116/173 (67%), Gaps = 3/173 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ PT S WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+TKAAAA M  R+ 
Sbjct: 14  QATATHPTTSVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTKAAAAVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +++WS L D  L   +++++ K  N   ++ AR L    LETPGGLK+QTIHAFCEA+
Sbjct: 74  RTLSSWSELDDHQLQTILSRLENKPVNAQKLTYARQLFARALETPGGLKIQTIHAFCEAL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           + QF LEANI  HF + D+   KKL+++A+   L   + D+ + L K  ++I+
Sbjct: 134 LHQFSLEANIAGHFELLDDISRKKLLQQARCQLL---IHDDAQSLLKQLFKII 183


>gi|319898220|ref|YP_004158313.1| ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73]
 gi|319402184|emb|CBI75715.1| putative ATP-dependent nuclease subunit A [Bartonella clarridgeiae
           73]
          Length = 1152

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 124/197 (62%), Gaps = 7/197 (3%)

Query: 13  TIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           TI  I QT  + Q  A+DP ++ WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T
Sbjct: 2   TIFSIPQTALNTQAKATDPIKNVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAA+ M  R+   +++W+   D+ L   ++ ++ K  N   ++ AR L    LETPGGL
Sbjct: 62  NAAASVMQSRIFRTLSSWNQFDDKQLQKILSNLENKPANAKKLANARQLFARALETPGGL 121

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           K+QT HAFCE+++ QFPLEANI  HF + D+   KKL+++A+   L       + + + A
Sbjct: 122 KIQTFHAFCESLLHQFPLEANIAGHFELLDDINRKKLLKQARSKLLT------HRDAQLA 175

Query: 192 FYEILEISNDEDIETLI 208
             E+ ++ N+  +  L+
Sbjct: 176 LKELFKVINENTLNQLL 192


>gi|240849707|ref|YP_002971095.1| double-strand break repair helicase AddA [Bartonella grahamii
           as4aup]
 gi|240266830|gb|ACS50418.1| double-strand break repair helicase AddA [Bartonella grahamii
           as4aup]
          Length = 1158

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 107/155 (69%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P ++ WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T+AAAA M  R+ 
Sbjct: 14  QATATHPQKNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTRAAAAVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +++W+ L D  L   +T+ + K  N   ++ AR L    LETPGGLK+QTIHAFCE++
Sbjct: 74  RTLSSWNELDDAQLQETLTRFEKKTVNAQKLTYARQLFARALETPGGLKIQTIHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           + QF LEANI  HF + DE   KKL++E+++  LA
Sbjct: 134 LHQFMLEANIAGHFELPDEISRKKLLQESRRQLLA 168


>gi|90421911|ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90103925|gb|ABD85962.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris BisB18]
          Length = 1164

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/192 (45%), Positives = 113/192 (58%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ ASDPT S +VSANAGSGKTH+LVQRV+RLLLA   P  +LC+T TKAAAA M+ RV 
Sbjct: 15  QVQASDPTASVFVSANAGSGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAANMAQRVF 74

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +  W  LSD+ L A I      +P+     +AR L    LETPGGLKVQTIHA C  +
Sbjct: 75  TTLGHWVTLSDDSLDAAIRAAGIAQPDSKLRMRARELFACALETPGGLKVQTIHALCTRL 134

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +QQFP EAN+ + FA+ DE    +++E A  S L       N    KA    +  + D  
Sbjct: 135 LQQFPFEANVPARFAVLDERDQTEMMERASLSVLLQAAQAPNSAAGKALTVAMTSAADVT 194

Query: 204 IETLISDIISNR 215
              ++ D   +R
Sbjct: 195 FRDVVRDACFSR 206


>gi|298290318|ref|YP_003692257.1| double-strand break repair helicase AddA [Starkeya novella DSM 506]
 gi|296926829|gb|ADH87638.1| double-strand break repair helicase AddA [Starkeya novella DSM 506]
          Length = 1144

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 87/213 (40%), Positives = 126/213 (59%), Gaps = 4/213 (1%)

Query: 11  SETIDL----ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           SE  DL    +    + Q  ASDP  SAWVSANAGSGKTH+L +RV+RLL+    P  +L
Sbjct: 2   SELTDLAPGPLRAATALQTTASDPLLSAWVSANAGSGKTHVLARRVIRLLMRGVPPGRIL 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           CLT+TKAAAA M++RVL+ +  W+ L DE L  EI +  G +P+    + AR L    LE
Sbjct: 62  CLTYTKAAAANMANRVLDELRRWATLDDETLDKEIVRTDGGRPDALRRAHARRLFAQALE 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           TPGGLK+QTIHAFC A++  FP EA + + F   +E    +L+   +   +         
Sbjct: 122 TPGGLKIQTIHAFCGALLHAFPFEAGVPAGFGELEEAARLELLARVRADVVLEAAGRPES 181

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALK 219
            L +A   I+  ++D+ I+ +I  ++++  AL+
Sbjct: 182 ALGQALGLIVGTTSDDGIDEIIGAMVADPAALE 214


>gi|154250594|ref|YP_001411418.1| double-strand break repair helicase AddA [Parvibaculum
           lavamentivorans DS-1]
 gi|154154544|gb|ABS61761.1| Double-strand break repair helicase AddA [Parvibaculum
           lavamentivorans DS-1]
          Length = 1156

 Score =  166 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 122/198 (61%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S+T   Q  AS P  S WVSANAGSGKTH L  RV RLLLA   P  +LCLT TKAAAAE
Sbjct: 9   SETDDAQRRASHPETSVWVSANAGSGKTHALTTRVARLLLAGTDPQRILCLTFTKAAAAE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS R+ + +  W+ +SDE L+ EI +++G  P+ + +  A  L    +ETPGGLK+QTIH
Sbjct: 69  MSARLYKRLGEWAMMSDEALAEEILEVEGTAPDTAKLRGAGQLFARAIETPGGLKIQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE ++ +FPLEA++   F I DE  +++L++E + + L     + +  L +A   ++ 
Sbjct: 129 AFCERLLGRFPLEADVPPQFEILDERAAQELMDEVRDAVLRRAGGEADTALGQALSHVVS 188

Query: 198 ISNDEDIETLISDIISNR 215
             ++     L+ ++   R
Sbjct: 189 RVDELAFGKLLKEVTDQR 206


>gi|158422338|ref|YP_001523630.1| putative exonuclease V [Azorhizobium caulinodans ORS 571]
 gi|158329227|dbj|BAF86712.1| putative exonuclease V [Azorhizobium caulinodans ORS 571]
          Length = 1171

 Score =  166 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 121/201 (60%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++    Q +A+ P  SAWVSANAGSGKTH+L QRV+RLLL    P  +LCLT+TKAAAA 
Sbjct: 17  AEASRRQGVAASPQISAWVSANAGSGKTHVLAQRVIRLLLQGTPPGRILCLTYTKAAAAN 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M++RVL+I++ W+ L D  L AE+ ++ G  P      +AR L    LETPGGLK+QTIH
Sbjct: 77  MANRVLKILSRWAGLDDAALDAELMRMDGMPPTPGLRIQARRLFAAALETPGGLKIQTIH 136

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFC  ++ +FP EA + + F   D+    +L+   +   +       +  L +A   ++E
Sbjct: 137 AFCGGLLHRFPFEAGVAAGFRELDDVGRMELMARIRADLVVEAARAPSSTLGRALARLME 196

Query: 198 ISNDEDIETLISDIISNRTAL 218
             +D  I+ L+   I+ R+ +
Sbjct: 197 EMSDGGIDDLLEAAIAARSTI 217


>gi|319404939|emb|CBI78541.1| ATP-dependent nuclease subunit A [Bartonella sp. AR 15-3]
          Length = 1151

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 111/166 (66%), Gaps = 1/166 (0%)

Query: 13  TIDLISQTKSE-QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           TI  I QT  + Q  A+ PT S WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T
Sbjct: 2   TIFSIPQTALDTQAKATHPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAA+ M  R+   +++W+   D+ L   ++ ++ K  N   ++ AR L    LETPGGL
Sbjct: 62  NAAASVMQSRIFCTLSSWNEFDDKQLQTILSNLEDKPANAQKLANARQLFARALETPGGL 121

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           K+QT HAFCE+++ QFPLEANI  HF + D+   KKL+++A++  L
Sbjct: 122 KIQTFHAFCESLLHQFPLEANIAGHFELLDDINRKKLLQQARRKLL 167


>gi|163867331|ref|YP_001608525.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476]
 gi|161016972|emb|CAK00530.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476]
          Length = 1157

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 121/189 (64%), Gaps = 6/189 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P ++ WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T+AAAA M  R+ 
Sbjct: 14  QATATHPQKNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTRAAAAVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +++W+ L D  L   +T+ + K  N   ++ AR L    LETPGGLK+QTIHAFCE++
Sbjct: 74  RTLSSWNELDDAQLQETLTRFENKPVNAQKLTYARQLFARALETPGGLKIQTIHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + QF LEANI  HF + D+   +KL +E++   LA        +++ A  ++L++ ++ +
Sbjct: 134 LHQFMLEANIAGHFELPDDISREKLRQESRCQLLA------RRDVQPALQQLLQVISEHN 187

Query: 204 IETLISDII 212
              L+ + +
Sbjct: 188 FNQLLYEAV 196


>gi|288959562|ref|YP_003449903.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510]
 gi|288911870|dbj|BAI73359.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510]
          Length = 1158

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/192 (40%), Positives = 120/192 (62%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDPT S WV A+AGSGKT +L  RVLRL+L+   P+ +LCLT TKAAAAEM+ R+ 
Sbjct: 3   QRRASDPTASVWVGASAGSGKTKVLTDRVLRLMLSGTPPARILCLTFTKAAAAEMAIRIN 62

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +  W+ L DE L   + ++ G++P+      AR L   +++ PGG+K+QTIHAFC+++
Sbjct: 63  RTLGLWATLPDEALEDRLAELCGERPSTEARLNARRLFAQVVDCPGGMKIQTIHAFCQSL 122

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +++FPLEA +  HF + D+  +  L+ EA+ + L +   + +  L +A   +    N ED
Sbjct: 123 LRRFPLEAELAPHFDVMDDRTADGLLTEARDAVLHAGRTEPDSPLGRAMGRLTGELNPED 182

Query: 204 IETLISDIISNR 215
              L++++   R
Sbjct: 183 FAALLAELAGQR 194


>gi|209965882|ref|YP_002298797.1| helicase, UvrD [Rhodospirillum centenum SW]
 gi|209959348|gb|ACI99984.1| helicase, UvrD [Rhodospirillum centenum SW]
          Length = 1171

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 125/192 (65%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP  S WV A+AG+GKT +L  RVLRL+LA   P  +LCLT TKAAAAEM++R+ 
Sbjct: 20  QRRAADPEASVWVGASAGTGKTKVLTDRVLRLMLAGTDPGRILCLTFTKAAAAEMANRIA 79

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +++W+   D++L   + ++ G++P++  +  AR L   +L+ PGG+K+QTIHAFC+++
Sbjct: 80  GRLSSWAVAEDDVLVDRLAELTGERPSRDQVVVARRLFARVLDAPGGMKIQTIHAFCQSL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +++FPLEA +  +F + D+  + +L+E+AK++ LA    D +  L  A   +    +++ 
Sbjct: 140 LRRFPLEAGLAPNFEVMDDRTAAELLEQAKQAVLADAQADADGPLGSAVAFLAGAVSEDA 199

Query: 204 IETLISDIISNR 215
              L++++   R
Sbjct: 200 FAELLAELTRER 211


>gi|115522488|ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115516435|gb|ABJ04419.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris BisA53]
          Length = 1165

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 117/201 (58%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S   ++Q+ ASDPT S +VSANAG+GKTH+LVQRV+RLLLA   P  +LC+T TKAAAA 
Sbjct: 9   SDAIAKQVQASDPTASVFVSANAGAGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAAN 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  LSD  L A I      KP+    ++AR L    LETPGGLKVQTIH
Sbjct: 69  MAQRVFSTLGHWVTLSDGALDAAIRGAGIAKPDAKLRTRARELFACALETPGGLKVQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A C  ++QQFP EAN+ + F + DE    +++E A    L       + E+ +A    + 
Sbjct: 129 ALCTRLLQQFPFEANVPARFTVLDERDQAEMMERASLGVLLRAASAPDSEIGRALTTAMT 188

Query: 198 ISNDEDIETLISDIISNRTAL 218
            + D     ++ +   +R + 
Sbjct: 189 SAADTTFRDVVREACMSRDSF 209


>gi|49473710|ref|YP_031752.1| ATP-dependent nuclease subunit A [Bartonella quintana str.
           Toulouse]
 gi|49239213|emb|CAF25532.1| ATP-dependent nuclease subunit A [Bartonella quintana str.
           Toulouse]
          Length = 1157

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 119/185 (64%), Gaps = 6/185 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  + WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+TKAAAA M  R+ 
Sbjct: 14  QATATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTSPARILCLTYTKAAAAVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +++W+ L D  L   +++++ K  N   +  AR L    LETPGGLK+QTIHAFCE++
Sbjct: 74  RTLSSWNELDDTQLQTILSRLENKPINAQKLIYARQLFARALETPGGLKIQTIHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + QF LEANI  HF + D+   KKL++E+++  LA      + + + A  ++L++ N+  
Sbjct: 134 LHQFMLEANIAGHFELLDDISRKKLLQESRRQLLA------HHDAQSALKQLLKVINEHT 187

Query: 204 IETLI 208
              L+
Sbjct: 188 FNQLL 192


>gi|319407899|emb|CBI81553.1| ATP-dependent nuclease subunit A [Bartonella schoenbuchensis R1]
          Length = 1151

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 116/176 (65%), Gaps = 2/176 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+ P  + WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T AAA+ M  R+   +
Sbjct: 17  ATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTNAAASVMQSRIFRTL 76

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           ++W+ L+DE L   +++++ K  N   ++ AR L    LETPGGLK+QTIHAFCEA++ Q
Sbjct: 77  SSWNELNDEQLQTVLSQLENKPTNTQKLAHARKLFARALETPGGLKIQTIHAFCEALLHQ 136

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           FPLE+NI  HF + D+    +L+ +A+   LA   + +   LK+ F  I E + D+
Sbjct: 137 FPLESNIAGHFELLDDTNRTQLLHQARCQLLAHSHIQS--ALKELFKTISESTFDQ 190


>gi|304320182|ref|YP_003853825.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis
           HTCC2503]
 gi|303299085|gb|ADM08684.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis
           HTCC2503]
          Length = 1166

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 6/176 (3%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANA----HPST 64
           +  +D +++T + Q   SDP RSAW+SANAGSGKTH+L+ RV+RLL  LA+      PS+
Sbjct: 17  NSALDPLAETTAIQQTVSDPRRSAWLSANAGSGKTHVLIGRVIRLLTDLADGGREIDPSS 76

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +LCLT T AAAAEM +R+ +I+  WS LSDE LS  +T   G+ P    + + R L    
Sbjct: 77  ILCLTFTNAAAAEMKNRLFDILGEWSLLSDEALSDALTTRFGRSPAAPSLMRTRRLFARA 136

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           L+TPGGL+VQTIHAFCE++++QFPLEA +   F++ D+ +   LI   +   L ++
Sbjct: 137 LDTPGGLRVQTIHAFCESLLRQFPLEAGVMPGFSVLDDAEYAALIHRCRWQALRAL 192


>gi|170749778|ref|YP_001756038.1| double-strand break repair helicase AddA [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656300|gb|ACB25355.1| double-strand break repair helicase AddA [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1165

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 111/176 (63%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T++ Q  A+DP  SAWVSANAG+GKT +L  RV+RLLL  A P  +LCLT TKAAAA M+
Sbjct: 18  TRANQRRAADPRASAWVSANAGAGKTKVLTDRVVRLLLDEAPPGRILCLTFTKAAAANMA 77

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV  ++  W  L DE L+AE+ ++ G++     +  AR L    +ETPGGLK++T+HA 
Sbjct: 78  IRVFRLLGRWVTLDDETLAAELAELTGERAGPERLRLARRLFARAVETPGGLKIETLHAL 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           CE ++  FP EAN+ + F + DE ++++L +    + LA  + + +  L  A   +
Sbjct: 138 CERLLHMFPFEANVPARFVVLDEAKARELFDIEMANVLADAVANGDTPLSAALARV 193


>gi|316931471|ref|YP_004106453.1| double-strand break repair helicase AddA [Rhodopseudomonas
           palustris DX-1]
 gi|315599185|gb|ADU41720.1| double-strand break repair helicase AddA [Rhodopseudomonas
           palustris DX-1]
          Length = 1161

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/160 (49%), Positives = 105/160 (65%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA 
Sbjct: 7   NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  L DE LSA I     K    S +++AR L    LETPGGLKVQTIH
Sbjct: 67  MAERVFTTLGHWVKLDDEELSAAIRATGIKAVGPSLLAQARKLFACALETPGGLKVQTIH 126

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           A C  ++QQFP EAN+ + F++ D+    +L++ A    L
Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVL 166


>gi|91974684|ref|YP_567343.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91681140|gb|ABE37442.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris BisB5]
          Length = 1159

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/152 (51%), Positives = 102/152 (67%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           Q +  Q+LASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA M
Sbjct: 10  QARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVPPERILCITFTKAAAANM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV   +  W  L DE L+A I     K    S +++AR L    LETPGGLKVQTIHA
Sbjct: 70  AERVFTTLGRWVTLDDEALTAAIKATGIKSVGPSLLAQARKLFACALETPGGLKVQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            C  ++QQFP EAN+ + F++ D+    +L++
Sbjct: 130 LCTRLLQQFPFEANVPARFSVLDDRDQAELMQ 161


>gi|39933154|ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39652779|emb|CAE25518.1| Possible exonuclease V and helicase activity based on COG
           assignment [Rhodopseudomonas palustris CGA009]
          Length = 1161

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/160 (49%), Positives = 105/160 (65%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA 
Sbjct: 7   NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  L DE LSA I     K    S +++AR L    LETPGGLKVQTIH
Sbjct: 67  MAERVFTTLGHWVKLDDEELSAAIHATGVKTVGPSLLAQARKLFACALETPGGLKVQTIH 126

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           A C  ++QQFP EAN+ + F++ D+    +L++ A    L
Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVL 166


>gi|192288510|ref|YP_001989115.1| double-strand break repair helicase AddA [Rhodopseudomonas
           palustris TIE-1]
 gi|192282259|gb|ACE98639.1| double-strand break repair helicase AddA [Rhodopseudomonas
           palustris TIE-1]
          Length = 1161

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/160 (49%), Positives = 105/160 (65%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA 
Sbjct: 7   NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  L DE LSA I     K    S +++AR L    LETPGGLKVQTIH
Sbjct: 67  MAERVFTTLGHWVKLDDEELSAAIHATGVKTVGPSLLAQARKLFACALETPGGLKVQTIH 126

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           A C  ++QQFP EAN+ + F++ D+    +L++ A    L
Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVL 166


>gi|49474856|ref|YP_032897.1| ATP-dependent nuclease subunit A [Bartonella henselae str.
           Houston-1]
 gi|49237661|emb|CAF26843.1| ATP-dependent nuclease subunit A [Bartonella henselae str.
           Houston-1]
          Length = 1160

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 104/154 (67%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  + WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+TKAAAA M  R+ 
Sbjct: 14  QATATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTKAAAAVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +++W+ L D  L   +++++ K      ++ AR L    LETPGGLK+QTIHAFCE++
Sbjct: 74  RTLSSWNELDDTQLQQTLSQLENKPITAQKLTYARQLFARALETPGGLKIQTIHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +  F LEANI  HF + D+   KKL++EA++  L
Sbjct: 134 LHHFMLEANIAGHFELVDDISRKKLLQEARRQLL 167


>gi|144899270|emb|CAM76134.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1146

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 125/204 (61%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I +  + Q  A+DPT S WV+A+AG+GKT +L  RVL LLLA   P  LLCLT TKAAA
Sbjct: 1   MIVEASNRQRQAADPTASVWVAASAGTGKTKVLTDRVLNLLLAGNAPHKLLCLTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEMS+R+   +  W+   D  L   +T++ G+ P   +  +AR L   +L+ PGG+ ++T
Sbjct: 61  AEMSNRINAKLATWAVADDASLDQTLTELLGRPPTPPETIRARRLFAQVLDAPGGMHMET 120

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFC++++++FPLEA I  HF + D+  + +L++EAK+  L       +  L  A  ++
Sbjct: 121 IHAFCQSLLRRFPLEAGIAPHFQVMDDRDAGELLDEAKEEVLTHARHGADAHLAAALDQV 180

Query: 196 LEISNDEDIETLISDIISNRTALK 219
               ++     L++++ S+R  LK
Sbjct: 181 TRHVHETGFPDLLAELASDRGRLK 204


>gi|27375863|ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110]
 gi|27349001|dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110]
          Length = 1180

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 113/197 (57%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           + ++ Q  ASDPT SA+VSANAGSGKTH+LVQRV+RLLL+   P  +LC+T TKAAAA M
Sbjct: 22  EVRARQARASDPTASAFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANM 81

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV   +  W  L D  L A I  +    P+     +AR L    LETPGGLKVQTIHA
Sbjct: 82  AERVFTTLGHWVTLDDIALDAAIRAVGIPHPSAKLRREARKLFACALETPGGLKVQTIHA 141

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++QQFP EAN+ + F++ DE     ++E A    L     D      +A    +  
Sbjct: 142 LCTRLLQQFPFEANVPARFSVIDERDQTDMMERANLKVLLEAARDPETVTGRALLTAMAS 201

Query: 199 SNDEDIETLISDIISNR 215
           + D   + ++ +   +R
Sbjct: 202 AADVTFKEVVREACLSR 218


>gi|170738831|ref|YP_001767486.1| double-strand break repair helicase AddA [Methylobacterium sp.
           4-46]
 gi|168193105|gb|ACA15052.1| double-strand break repair helicase AddA [Methylobacterium sp.
           4-46]
          Length = 1157

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 82/205 (40%), Positives = 126/205 (61%), Gaps = 2/205 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D ++QT   Q  A+DP  SAWVSANAG+GKT +L  RV+RLLL  A P+ +LCLT TKA
Sbjct: 8   VDAVTQTA--QRRAADPRASAWVSANAGAGKTKVLTDRVVRLLLHGAPPAKILCLTFTKA 65

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAA M+ RV E +  W  L +E L AE+T ++G++P+ + + +AR L    +ETPGGLK+
Sbjct: 66  AAANMAIRVFERLGRWVTLPEEALRAELTALEGERPDPATLRRARRLFARAVETPGGLKI 125

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           +T+HA CE ++   P EAN+ + F + DE Q+++ ++    + LA  +     +L +A  
Sbjct: 126 ETLHALCERLLHLVPFEANVPARFVVLDEAQTREAVDRTIDNVLADAVDGTRPDLAQALA 185

Query: 194 EILEISNDEDIETLISDIISNRTAL 218
            +   +  E +   I + +  R  L
Sbjct: 186 RVAPEAAGEALRRAIGEAVRARAVL 210


>gi|86747755|ref|YP_484251.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86570783|gb|ABD05340.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris HaA2]
          Length = 1161

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/152 (50%), Positives = 101/152 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           Q +  Q+LASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA M
Sbjct: 10  QARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVPPERILCITFTKAAAANM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV   +  W  L D  L+A I     K    S +++AR L    LETPGGLKVQTIHA
Sbjct: 70  AERVFTTLGRWVTLDDAALTAAIKATGIKSVGPSLLAQARKLFACALETPGGLKVQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            C  ++QQFP EAN+ + F++ D+    +L++
Sbjct: 130 LCTRLLQQFPFEANVPARFSVLDDRDQAELMQ 161


>gi|302384281|ref|YP_003820104.1| double-strand break repair helicase AddA [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194909|gb|ADL02481.1| double-strand break repair helicase AddA [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 1160

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 125/198 (63%), Gaps = 3/198 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+DP +S +V+ANAGSGKT  LV RV RLLL +  P  +LC+T+TKAAAAEM  R+ 
Sbjct: 15  QIAAADPRQSVFVTANAGSGKTSTLVDRVARLLLEDVSPGEILCVTYTKAAAAEMQARLF 74

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           + + AW+ + D  L A +  + G+     +K+D+S AR L    L+TPGGLK+QT+HAFC
Sbjct: 75  DRLGAWAVMDDATLEASLADLDGRAATILSKTDLSNARRLFAKALDTPGGLKIQTLHAFC 134

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           E ++++FPLEA +T  F + +++ +  L  EA++      + + + E+ +A+       +
Sbjct: 135 EKLLRRFPLEAGVTPGFTVLEDQAATALSHEAREDLARRALGNGDGEIGRAYAHFAVELD 194

Query: 201 DEDIETLISDIISNRTAL 218
            +  E L++ I ++R  L
Sbjct: 195 FKSFEGLLARIEADRARL 212


>gi|92115690|ref|YP_575419.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91798584|gb|ABE60959.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter
           hamburgensis X14]
          Length = 1162

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 83/192 (43%), Positives = 114/192 (59%), Gaps = 4/192 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           + Q  ASDP  S +VSANAGSGKTH+LVQRV+RLLL    P+ +LC+T TKAAAA MS R
Sbjct: 13  ARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNGVDPARILCITFTKAAAANMSER 72

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V   +  W  L DE L+A +      +P+     +AR L    LETPGGLKVQTIHA C 
Sbjct: 73  VFSTLGHWVTLDDEALNAALRDTGIAQPDAWSRQRARKLFAAALETPGGLKVQTIHALCT 132

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++QQFP EA + + F++ DE     ++E A      S+MLD ++         L+ +  
Sbjct: 133 RLLQQFPFEARVPARFSVLDERDQTGMMERAS----ISVMLDASQNPDSPAGRALQYAMG 188

Query: 202 EDIETLISDIIS 213
              +T + D+++
Sbjct: 189 AAADTTLRDVVN 200


>gi|220921602|ref|YP_002496903.1| double-strand break repair helicase AddA [Methylobacterium nodulans
           ORS 2060]
 gi|219946208|gb|ACL56600.1| double-strand break repair helicase AddA [Methylobacterium nodulans
           ORS 2060]
          Length = 1157

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 124/199 (62%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T++ Q  A+DP  SAWVSANAG+GKT +L  RV+RLLL  A PS +LCLT TKAAAA M+
Sbjct: 12  TRTAQRRAADPCASAWVSANAGAGKTKVLTDRVVRLLLHGAAPSKILCLTFTKAAAANMA 71

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV E +  W  L  E L AE+T+++G++P+ + + +AR L    +ETPGGLK++T+HA 
Sbjct: 72  IRVFERLGRWVTLDAEALRAELTELEGERPDAATLRRARRLFARAVETPGGLKIETLHAL 131

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++   P EAN+ + F + DE Q+++ ++    + LA  +   + +L  A   +   +
Sbjct: 132 CERLLHLVPFEANVPARFVVLDEAQTREAVDRTIDNVLADAVDGTHPDLAGALGLVAPEA 191

Query: 200 NDEDIETLISDIISNRTAL 218
             E +   I + +  R+ L
Sbjct: 192 AGETLRRAIGEAVRARSLL 210


>gi|6626267|gb|AAF19532.1| putative helicase 2 [Bradyrhizobium japonicum]
          Length = 591

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 100/159 (62%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           + ++ Q +ASDP  SA+VSANAGSGKTH+LVQRV+RLLL+   P  +LC+T TKAAAA M
Sbjct: 11  EVRARQAVASDPAASAFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV   +  W  L D  L A I  +    P+     +A  L    LETPGGLKVQTIHA
Sbjct: 71  AERVFTTLGHWVTLDDIALDAAIRAVGIPHPSAKLRREAERLFACALETPGGLKVQTIHA 130

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            C  ++QQFP EAN+ + F++ DE     ++E A    L
Sbjct: 131 LCTRLLQQFPFEANVPARFSVIDERDQTDMMERANLKVL 169


>gi|148251712|ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp.
           BTAi1]
 gi|146403885|gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp.
           BTAi1]
          Length = 1156

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/157 (49%), Positives = 100/157 (63%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  Q  AS+P  SA+VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA M+ 
Sbjct: 12  RDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMAE 71

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV   +  W  L DE L + I       P+K   + AR L  + LETPGGLKVQTIHA C
Sbjct: 72  RVFSTLGHWVTLDDEALDSAIKSTGIPTPDKKLRASARKLFASALETPGGLKVQTIHALC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             ++QQFP EAN+ + F++ DE    +++E A    L
Sbjct: 132 TRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVL 168


>gi|329891017|ref|ZP_08269360.1| double-strand break repair helicase AddA [Brevundimonas diminuta
           ATCC 11568]
 gi|328846318|gb|EGF95882.1| double-strand break repair helicase AddA [Brevundimonas diminuta
           ATCC 11568]
          Length = 1119

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/156 (48%), Positives = 105/156 (67%), Gaps = 3/156 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           + Q  A+DP RS +V+ANAGSGKT  LV RV RLLL  A PS +LC+T+TKAAAAEM  R
Sbjct: 10  TPQSRAADPARSVFVTANAGSGKTSTLVNRVARLLLGGAAPSAILCVTYTKAAAAEMQAR 69

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHA 138
           + E +  W+ + D  LSAE+ K+    P   N + +S+AR L    LETPGGLK+QTIHA
Sbjct: 70  LFETLGKWAVMDDGELSAELAKLDDSDPAALNPARLSEARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           FCE ++++FP+EA ++  F + + E +  L   A++
Sbjct: 130 FCEKLLRRFPIEAGVSPRFTVLENEAAIALSHAARE 165


>gi|182679138|ref|YP_001833284.1| double-strand break repair helicase AddA [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635021|gb|ACB95795.1| double-strand break repair helicase AddA [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 1164

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 121/199 (60%), Gaps = 2/199 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T   Q  ASDP  S WVSA+AGSGKTH+L QRV+R+LL    P+ +LCLT TKAAAA M+
Sbjct: 8   TLERQKKASDPATSIWVSAHAGSGKTHVLAQRVIRILLRGVPPAKILCLTFTKAAAANMA 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W+ L D  L  EI       P  +D+  AR L    +ETPGGLK+QT+HAF
Sbjct: 68  ARVFDRLALWTRLDDATLRQEIIATGAPAPEAADLLLARKLFARTVETPGGLKIQTLHAF 127

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++  FP EAN+ S F++ +EE+ K+L E+A+ + L       +  L+ A   + E  
Sbjct: 128 CEKLLHLFPFEANVPSRFSVVEEERQKELFEQARHTILHEAE-GKDHPLRGALALLTESC 186

Query: 200 NDEDIETLISDIISNRTAL 218
           + +  E LI + ++ R AL
Sbjct: 187 SSDRFENLIKEAMA-RGAL 204


>gi|83313261|ref|YP_423525.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82948102|dbj|BAE52966.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 1154

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 1/199 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DPT S WV+A+AG+GKT +L  RVL LLLA   P  +LCLT TKAAAAEMS+R+ 
Sbjct: 15  QRRAADPTASVWVAASAGTGKTKVLTDRVLTLLLAGTPPHKILCLTFTKAAAAEMSNRIA 74

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +  W+   D  L+ ++ ++ G+ P+  +M+ AR L   +L+ PGG+ ++TIHAFC+++
Sbjct: 75  GRLGQWATAHDSDLADDLGRLLGRAPSPGEMTGARRLFAALLDAPGGMHMETIHAFCQSL 134

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +++FPLEA I  HF + D+  + +L+E AK   L+   + +   L  A   +    ++  
Sbjct: 135 LRRFPLEAGIAPHFQVMDDRDAGELLEAAKLEILSQARMGDG-ALGGALALVTSRVHETA 193

Query: 204 IETLISDIISNRTALKLIF 222
              L+ ++ + R  L+ +F
Sbjct: 194 FPELMGELTAERGRLERLF 212


>gi|114769726|ref|ZP_01447336.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha
           proteobacterium HTCC2255]
 gi|114549431|gb|EAU52313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha
           proteobacterium HTCC2255]
          Length = 1125

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 103/148 (69%), Gaps = 4/148 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A++P ++ WVSANAGSGKT +L  RV RLLL N  P  +LCLT+TKAAAAEM +R+ 
Sbjct: 10  QIYAANPIKNTWVSANAGSGKTRVLTDRVARLLLNNTDPQKILCLTYTKAAAAEMQNRLF 69

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFC 140
           + +  W+ L DE L  E+  + G+  N      + +AR L    LETPGGLK+QTIH+FC
Sbjct: 70  DSLGKWAMLPDEELRTELKSL-GENENTLSPDKIKQARTLFAAALETPGGLKIQTIHSFC 128

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKL 168
           +A++++FPLEA ++  F + +E Q+K+L
Sbjct: 129 DALLRRFPLEAGVSPQFNMLEERQAKQL 156


>gi|23016111|ref|ZP_00055871.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 1154

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 109/168 (64%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           +E   L       Q  A+DPT S WV+A+AG+GKT +L  RVL LLLA   P  +LCLT 
Sbjct: 2   TEVSALSQDADRRQRRAADPTASVWVAASAGTGKTKVLTDRVLTLLLAGTPPHKILCLTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TKAAAAEMS+R+   +  W+   D+ L+ ++ ++ G+ P   +M  AR L  ++L+ PGG
Sbjct: 62  TKAAAAEMSNRIAGRLGQWATARDQDLAGDLERLLGRPPAVGEMIGARRLFASLLDAPGG 121

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           + ++TIHAFC++++++FPLEA I  HF + D+  + +L+E AK   L+
Sbjct: 122 MHMETIHAFCQSLLRRFPLEAGIAPHFQVMDDRDAGELLESAKLEVLS 169


>gi|75674249|ref|YP_316670.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419119|gb|ABA03318.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter
           winogradskyi Nb-255]
          Length = 1202

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/166 (46%), Positives = 105/166 (63%), Gaps = 4/166 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           + Q  ASDP  S +VSANAGSGKTH+LVQRV+RLLL +  P+ +LC+T TKAAAA M+ R
Sbjct: 14  ARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNDVDPARILCITFTKAAAANMAER 73

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V   +  W  L DE L+  +  +   +P      +AR L  + LETPGGLKVQTIHA C 
Sbjct: 74  VFSTLGHWVTLDDEALNGALRDVGIAQPGARWRERARKLFASALETPGGLKVQTIHALCT 133

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            ++QQFP EA + + F + DE    +++E A       +MLD +++
Sbjct: 134 RLLQQFPFEAEVPARFTVLDERDQTEMMERAS----LKVMLDASQD 175


>gi|299133347|ref|ZP_07026542.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2]
 gi|298593484|gb|EFI53684.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2]
          Length = 1163

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 78/157 (49%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  QL AS P  SA+V+ANAGSGKT++LV RV+RLLL +  P  +LC+T TKAAAA M+ 
Sbjct: 13  REAQLRASHPQSSAFVAANAGSGKTYVLVNRVIRLLLDDVAPEKILCITFTKAAAANMAQ 72

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV + +  W  LSD+ L A I +  G +  +   ++AR L    LETPGGLKVQTIHA C
Sbjct: 73  RVFDTLGKWVALSDDELDAAI-RNSGAQVTRDVRARARKLFACALETPGGLKVQTIHALC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             ++QQFP EAN+ +HFA+ DE     ++E A  + L
Sbjct: 132 TRLLQQFPFEANVPAHFAVLDERDQTDMMERANLAVL 168


>gi|85714148|ref|ZP_01045137.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
 gi|85699274|gb|EAQ37142.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
          Length = 1176

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 82/192 (42%), Positives = 114/192 (59%), Gaps = 4/192 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           + Q  ASDP  S +VSANAGSGKTH+LVQRV+RLLL +  P+ +LC+T TKAAAA M+ R
Sbjct: 25  ARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNDVPPARILCITFTKAAAANMAER 84

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V   +  W  L D  L+A +  +   +P+     +AR L  + LETPGGLKVQTIHA C 
Sbjct: 85  VFSTLGHWITLDDGTLNAALRDVGIAQPDARWRERARKLFASALETPGGLKVQTIHALCT 144

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++QQFP EA + + FA+ DE    +++E A       +MLD +          L  +  
Sbjct: 145 RLLQQFPFEAEVPARFAVLDERDQTEMMERAS----LKVMLDASRNPDSPAGRALRYAMG 200

Query: 202 EDIETLISDIIS 213
              ++ + D+IS
Sbjct: 201 AAADSTLRDVIS 212


>gi|197103666|ref|YP_002129043.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1]
 gi|196477086|gb|ACG76614.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1]
          Length = 1147

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/142 (52%), Positives = 101/142 (71%), Gaps = 3/142 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DP RSA+V+ANAGSGKT  L+ RV RLLLA A P T+LC+T+TKAAAAEM  R+ 
Sbjct: 11  QRIAADPGRSAFVTANAGSGKTKTLIDRVARLLLARAEPETILCVTYTKAAAAEMQRRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           + +  WS + D  L+ E+  ++G+     D   +S+AR L    LETPGGLK+QTIHAFC
Sbjct: 71  KRLGDWSVMPDGPLTEELAHLEGRPAAAYDDLRLSEARALFARALETPGGLKIQTIHAFC 130

Query: 141 EAIMQQFPLEANITSHFAIADE 162
           E ++++FPLEA I+  F + D+
Sbjct: 131 EKLLRRFPLEAGISPGFRVMDD 152


>gi|114568640|ref|YP_755320.1| DNA helicase/exodeoxyribonuclease V A [Maricaulis maris MCS10]
 gi|114339102|gb|ABI64382.1| DNA helicase/exodeoxyribonuclease V, subunit A [Maricaulis maris
           MCS10]
          Length = 1183

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/201 (39%), Positives = 120/201 (59%), Gaps = 7/201 (3%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D++    ++Q  A+ P  S +V ANAGSGKT +LV RV+ LLLA   P T+LC+T+TKAA
Sbjct: 9   DILKSASADQQRAARPEASVFVEANAGSGKTRVLVDRVINLLLAGHKPETILCVTYTKAA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+ + +  WS   DE+L+ E+  +  +     D ++AR L    LETPGGLK+Q
Sbjct: 69  AAEMKERLFKRLGDWSVTPDEVLAVELKALLDRDLKPGDANRARKLFAQALETPGGLKIQ 128

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFCE ++++FPLEA     F   D+  + K ++ A+++ L+ +         +A   
Sbjct: 129 TIHAFCEGLLRRFPLEAGAPPGFDTLDDISAGKAMDAARRAVLSGLA-------PEAVNT 181

Query: 195 ILEISNDEDIETLISDIISNR 215
           ++E    + I T++    SNR
Sbjct: 182 LIETGGPDAINTILRWARSNR 202


>gi|83594763|ref|YP_428515.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83577677|gb|ABC24228.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 1187

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 103/159 (64%), Gaps = 5/159 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP  SAWV+A+AG+GKT +L  RVLRLLLA   P  LLCLT TKAAAAEM++RV 
Sbjct: 24  QRRAADPLASAWVAASAGTGKTKVLTDRVLRLLLAGTPPQRLLCLTFTKAAAAEMANRVS 83

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHA 138
            ++  W+ L +E L   +  + G  P   +       +AR L   +L+ PGGL++QTIH 
Sbjct: 84  AVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRLFAQVLDCPGGLRIQTIHG 143

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           FC+ ++++FPLEA +  HF + D+ +++ L + A+ + L
Sbjct: 144 FCQTLLRRFPLEAGVAPHFEVLDDREAQALHQSARDAVL 182


>gi|167648808|ref|YP_001686471.1| double-strand break repair helicase AddA [Caulobacter sp. K31]
 gi|167351238|gb|ABZ73973.1| double-strand break repair helicase AddA [Caulobacter sp. K31]
          Length = 1157

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 122/198 (61%), Gaps = 4/198 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DP  SA+V+ANAGSGKT  L+ RV RLLLA + P  +LC+T+TKAAAAEM  R+ 
Sbjct: 5   QRIAADPAISAFVTANAGSGKTKTLIDRVARLLLAGSSPEAILCVTYTKAAAAEMQRRLF 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           E +  W    D  L  ++  ++G++P   D   +SKAR L    LETPGGLK+QTIHAFC
Sbjct: 65  ERLGEWCVTPDVKLREQLGALEGREPASFDHRELSKARGLFAKALETPGGLKIQTIHAFC 124

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           E ++++FPLEA ++  F + D+  S  + + A +  +A+ + D+++   +A+       +
Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDDSASAAIAQGALRQ-VATWVTDHDDAFAQAYARFSVALD 183

Query: 201 DEDIETLISDIISNRTAL 218
               E + +   S R A+
Sbjct: 184 FASFEAMFATFESQRGAI 201


>gi|221236588|ref|YP_002519025.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000]
 gi|220965761|gb|ACL97117.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000]
          Length = 1153

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 74/143 (51%), Positives = 100/143 (69%), Gaps = 3/143 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DPT SA+V+ANAGSGKT  L+ RV RLLLA   P  +LC+T+TKAAAAEM  R+ 
Sbjct: 5   QRIAADPTISAFVTANAGSGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLF 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           + +  WS  SD  L AE+ K+ G+   + D   +S AR L    LETPGGLK+QTIHAFC
Sbjct: 65  DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 124

Query: 141 EAIMQQFPLEANITSHFAIADEE 163
           E ++++FPLEA ++  F + D++
Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDDQ 147


>gi|154247228|ref|YP_001418186.1| double-strand break repair helicase AddA [Xanthobacter
           autotrophicus Py2]
 gi|154161313|gb|ABS68529.1| Double-strand break repair helicase AddA [Xanthobacter
           autotrophicus Py2]
          Length = 1167

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 119/204 (58%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D  S+    Q  AS P  SAWVSANAGSGKTH+L +RV+RLLLA   P  +LCLT+TKAA
Sbjct: 16  DPKSEATRRQSEASHPAFSAWVSANAGSGKTHVLARRVIRLLLAGTPPGRILCLTYTKAA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AA M++RVL I+  W  L D  L   I    G  P+ +  ++AR L    LETPGGLK+Q
Sbjct: 76  AANMANRVLAILGRWVRLPDAELDDAIRDTVGSPPDAALRARARRLFAAALETPGGLKIQ 135

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFC A++ +FP EA++ + F   DE   ++L+   +   + +     N  L +A   
Sbjct: 136 TIHAFCGALLHRFPFEADVAAGFGELDEVGRQELMARIRADLVVAASRTPNALLGEALAR 195

Query: 195 ILEISNDEDIETLISDIISNRTAL 218
           + E  +D  +  L+   ++ R  +
Sbjct: 196 LTEDMSDSGLSGLLEAAVALRARI 219


>gi|146337257|ref|YP_001202305.1| helicase-exonuclease type V family protein AddA subunit
           [Bradyrhizobium sp. ORS278]
 gi|146190063|emb|CAL74055.1| putative helicase-exonuclease type V protein family, addA subunit
           [Bradyrhizobium sp. ORS278]
          Length = 1156

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/157 (48%), Positives = 98/157 (62%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  Q  AS+P  SA+VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA M+ 
Sbjct: 12  RDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMAE 71

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV   +  W  L D  L + I        +K   + AR L  + LETPGGLKVQTIHA C
Sbjct: 72  RVFSTLGHWVTLDDGALDSAIKSTGILTSDKKLRASARKLFASALETPGGLKVQTIHALC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             ++QQFP EAN+ + F++ DE    +++E A    L
Sbjct: 132 TRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVL 168


>gi|16127768|ref|NP_422332.1| UvrD/Rep family helicase [Caulobacter crescentus CB15]
 gi|13425272|gb|AAK25500.1| helicase, UvrD/Rep family [Caulobacter crescentus CB15]
          Length = 1203

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/143 (51%), Positives = 100/143 (69%), Gaps = 3/143 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DPT SA+V+ANAG+GKT  L+ RV RLLLA   P  +LC+T+TKAAAAEM  R+ 
Sbjct: 55  QRIAADPTISAFVTANAGAGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLF 114

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           + +  WS  SD  L AE+ K+ G+   + D   +S AR L    LETPGGLK+QTIHAFC
Sbjct: 115 DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 174

Query: 141 EAIMQQFPLEANITSHFAIADEE 163
           E ++++FPLEA ++  F + D++
Sbjct: 175 EKLLRRFPLEAGVSPGFTVMDDQ 197


>gi|295687598|ref|YP_003591291.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC
           21756]
 gi|295429501|gb|ADG08673.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC
           21756]
          Length = 1153

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/143 (51%), Positives = 100/143 (69%), Gaps = 3/143 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DP  SA+V+ANAGSGKT  L+ RV RLLLA   P  +LC+T+TKAAAAEM  R+ 
Sbjct: 5   QRIAADPAISAFVTANAGSGKTKTLIDRVARLLLAKVPPEAILCVTYTKAAAAEMQRRLF 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           E +  WS  SD  L AE+ K+ G+  +  D   +S+AR L    LETPGGLK+QTIHAFC
Sbjct: 65  ERLGKWSVTSDADLRAELAKLVGESDDIYDARRLSEARALFAQALETPGGLKIQTIHAFC 124

Query: 141 EAIMQQFPLEANITSHFAIADEE 163
           E ++++FPLEA ++  F + D++
Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDDQ 147


>gi|254420948|ref|ZP_05034672.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187125|gb|EDX82101.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
          Length = 1139

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/156 (45%), Positives = 103/156 (66%), Gaps = 3/156 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           S Q++A+DP  + +V+ANAGSGKT  LV RV RLLL    P  +LC+T+TKAAAAEM  R
Sbjct: 4   SPQIVAADPRLTVFVTANAGSGKTTTLVNRVARLLLDQVDPGAILCVTYTKAAAAEMQAR 63

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHA 138
           + + +  W+ L D  LS E+ ++    P   D   +S+AR L    LETPGGLK+QTIHA
Sbjct: 64  LFDQLGGWAVLDDAALSRELARLDDGDPQAMDHAALSRARKLFARALETPGGLKIQTIHA 123

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           FCE ++++FPLEA ++  F + +++ +  L   A++
Sbjct: 124 FCEKLLRRFPLEAGVSPRFTVLEDQAATALSHSARE 159


>gi|83859061|ref|ZP_00952582.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852508|gb|EAP90361.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 1219

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 5/197 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP+ S +V ANAGSGKT +LV RV RLLLA A P  +LC+T TKAAA EM  R+ 
Sbjct: 18  QATAADPSASVFVEANAGSGKTRVLVDRVARLLLAGARPDRILCVTFTKAAAGEMQARLF 77

Query: 84  EIITAWSHLSDEILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
             +  WS L D+ L+ E+  +  +G++P    + +AR L    LETPGGLK+QT+HAFCE
Sbjct: 78  RKLGDWSTLPDDALTKELDALVTEGQRP---PLDEARRLFARALETPGGLKIQTLHAFCE 134

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +++++FPLEA +   F + D+     L  EA ++       D   E+ +A   +++ S  
Sbjct: 135 SLLRRFPLEAGLPPGFEVQDDASGLALQTEALEALSGQAHRDPEGEIAQAIAALIDGSGA 194

Query: 202 EDIETLISDIISNRTAL 218
           + +  L + ++S R  L
Sbjct: 195 DALARLSAFVMSKRHEL 211


>gi|209883635|ref|YP_002287492.1| double-strand break repair helicase AddA [Oligotropha
           carboxidovorans OM5]
 gi|209871831|gb|ACI91627.1| double-strand break repair helicase AddA [Oligotropha
           carboxidovorans OM5]
          Length = 1161

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/157 (50%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  Q  AS+P  SA+V+ANAGSGKTH+LV RV+RLLLA+  P  +LC+T TKAAAA M+ 
Sbjct: 13  RDAQARASNPEASAFVAANAGSGKTHVLVTRVIRLLLADVAPEKILCITFTKAAAANMAQ 72

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV E +  W  L D+ L A I  + G    +    +AR L    LETPGGLKVQTIHA C
Sbjct: 73  RVFETLGRWVALDDDALDAAIRHV-GAPATREMRVRARKLFACALETPGGLKVQTIHALC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             ++QQFP EAN+ +HFA+ DE    +++E A  + L
Sbjct: 132 TRLLQQFPFEANVPAHFAVLDERDQTEMMERANLAVL 168


>gi|83950792|ref|ZP_00959525.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           nubinhibens ISM]
 gi|83838691|gb|EAP77987.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           nubinhibens ISM]
          Length = 1112

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/197 (40%), Positives = 122/197 (61%), Gaps = 10/197 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W+SANAGSGKT +L  RV RLLLA+ +P  +LCLT+TKAAA+EM +R+ 
Sbjct: 8   QIDAARPDFSTWLSANAGSGKTRVLTDRVARLLLADVNPQNILCLTYTKAAASEMQNRLF 67

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCE 141
           + + AW+ L D  L  E+ K+ G      D  ++KAR L  T +ETPGGL++QTIH+FC 
Sbjct: 68  QRLGAWAMLPDADLREELRKL-GVDAVIDDLPLTKARRLFATAIETPGGLRIQTIHSFCA 126

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           A++++FPLEA +T  F   D+  +  L    +   +  I L  +  L +   +++   + 
Sbjct: 127 ALLRRFPLEAGVTPQFTEMDDRTAATL----RSDVVEEIALGPDAALLR---DLVSYYSG 179

Query: 202 EDIETLISDIISNRTAL 218
           +D++ L+ +I+  R  L
Sbjct: 180 DDLDKLLREILGKRDQL 196


>gi|294675594|ref|YP_003576209.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
 gi|294474414|gb|ADE83802.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
          Length = 1121

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+DP  S W++ANAGSGKT +L  RV RLLLA   P  +LCLT+TKAAAAEM +R+L
Sbjct: 11  QVQAADPAASTWLAANAGSGKTKVLTDRVARLLLAGTEPQKVLCLTYTKAAAAEMQNRLL 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L D  L A++  +    P +   +++AR L    +ETPGGLK+QTIHAFC A
Sbjct: 71  KRLGDWAMLPDADLRAQLAALGECGPLDAESLARARRLFAQAIETPGGLKIQTIHAFCGA 130

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           ++++FPLEA ++  FA  D+  + ++ EE
Sbjct: 131 LLRRFPLEAGVSHGFAEIDDRTAARMREE 159


>gi|254294694|ref|YP_003060717.1| double-strand break repair helicase AddA [Hirschia baltica ATCC
           49814]
 gi|254043225|gb|ACT60020.1| double-strand break repair helicase AddA [Hirschia baltica ATCC
           49814]
          Length = 1198

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 99/150 (66%), Gaps = 3/150 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ PT SAWVSANAGSGKT +L+ RV RLLL    P  ++C+T+TKAAA+EM  R+ 
Sbjct: 17  QFDAATPTHSAWVSANAGSGKTKVLIDRVARLLLNGVQPDAIMCVTYTKAAASEMQGRLF 76

Query: 84  EIITAWSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           + +  W    D+ L+ E+ ++Q    ++  + ++ KAR L    LETPGGL+++TIHAFC
Sbjct: 77  KRLGGWCVADDKALAKELAELQARDIREYTQEELGKARELFALALETPGGLRIETIHAFC 136

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             ++++FPLEAN+   F   D+  + +L E
Sbjct: 137 GRLLRRFPLEANVAPGFKELDDNDASRLWE 166


>gi|126734388|ref|ZP_01750135.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. CCS2]
 gi|126717254|gb|EBA14118.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. CCS2]
          Length = 1112

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 96/135 (71%), Gaps = 1/135 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAAAEM +R+ 
Sbjct: 10  QVDAADPRISTWLSANAGSGKTRVLTDRVARLLLEEVSPQNILCLTYTKAAAAEMQNRLF 69

Query: 84  EIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           + + AW+ +SD  LSAE+  +   ++ + S +S+AR L    +ETPGGLK+QTIH+FC  
Sbjct: 70  QRLGAWAMMSDTELSAELLALGVDRQIDSSQLSQARTLFARAIETPGGLKIQTIHSFCAG 129

Query: 143 IMQQFPLEANITSHF 157
           ++++FPLEA ++  F
Sbjct: 130 VLRRFPLEAQVSPQF 144


>gi|296532162|ref|ZP_06894922.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296267510|gb|EFH13375.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 943

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/209 (38%), Positives = 125/209 (59%), Gaps = 6/209 (2%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           SET+   +  ++ Q  ASDP  SAWV A+AGSGKT +L  RVLRLLL   A P  +LCLT
Sbjct: 20  SETLTPRAAAQAAQRRASDPRASAWVGASAGSGKTKVLTDRVLRLLLRPGAKPGRILCLT 79

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            TKAAAAEM+ R+ + +  W+   D  LS  +  + G+KP+ +   +AR L   +LE PG
Sbjct: 80  FTKAAAAEMATRLAKRLGEWAVAEDTALSDSLLSLTGEKPDAALRRRARGLFAEVLEQPG 139

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+++ TIH+FC+++++ FPLEA +   FA+ +E  + +++ E+++  LAS  L      +
Sbjct: 140 GMRISTIHSFCQSLLRGFPLEAGLPPQFALIEEADAAEMLAESRELALASGQLP-----Q 194

Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218
            A   +  + + ED    +  ++  R  L
Sbjct: 195 AAIEAMAGLGSPEDFAQTLQSLVKERERL 223


>gi|163797153|ref|ZP_02191108.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199]
 gi|159177669|gb|EDP62222.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199]
          Length = 1152

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 127/206 (61%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           T  +++     Q LA+DPT S WV+A+AGSGKT +L  R+L LLL  A P  LLCLT+TK
Sbjct: 3   TASVLAAANERQRLAADPTASVWVAASAGSGKTKVLTDRLLNLLLDGASPERLLCLTYTK 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM+ R+   + AW+ + +  L  ++ ++ G  P ++ ++KAR L   +L+ PGGLK
Sbjct: 63  AAAAEMATRLQSRLAAWTVVDEPSLVDDLARLSGATPTQARLAKARRLFAEVLDAPGGLK 122

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +QTIHAF ++++ +FPLEA +  +F +AD+  S  L+ EA+ + LA      + +L  A 
Sbjct: 123 IQTIHAFAQSLLGRFPLEAGVPPNFRLADDRASAALLAEAEAAMLARARSATDTDLATAL 182

Query: 193 YEILEISNDEDIETLISDIISNRTAL 218
             + E +N E    L+   +  RT L
Sbjct: 183 SIVTERANQEQFRELMRAALGARTRL 208


>gi|89067401|ref|ZP_01154914.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
           granulosus HTCC2516]
 gi|89046970|gb|EAR53024.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
           granulosus HTCC2516]
          Length = 1119

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 12/202 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++    Q+ A+DP  S W+SANAGSGKT +L +RV RLLL    P  +LCLT TKAAAAE
Sbjct: 5   NEATRAQVEAADPANSTWLSANAGSGKTRVLTERVARLLLGGVDPQNILCLTFTKAAAAE 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+   + +W+ +    L  E++++   +P + D  +AR L    +ETPGGLK+QTIH
Sbjct: 65  MQNRLFHRLGSWAMMEAGKLREELSELGAAQPEELD--EARRLFARAIETPGGLKIQTIH 122

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE-IL 196
           AFC  ++++FPLEA I+  F           +E+   + L + +LD   E   A  + I 
Sbjct: 123 AFCAGVLRRFPLEAGISPRFT---------EMEDRAAALLRAEILDELAEADPAAVDGIA 173

Query: 197 EISNDEDIETLISDIISNRTAL 218
            +    DI  L  +I +NR A 
Sbjct: 174 RLYTGADIADLTGEITANRAAF 195


>gi|315497132|ref|YP_004085936.1| double-strand break repair helicase adda [Asticcacaulis excentricus
           CB 48]
 gi|315415144|gb|ADU11785.1| double-strand break repair helicase AddA [Asticcacaulis excentricus
           CB 48]
          Length = 1168

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/154 (47%), Positives = 101/154 (65%), Gaps = 3/154 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP  S +++ANAGSGKT  LV RV RLLL  A P  +LC+T+TKAAAAEM  R+ 
Sbjct: 4   QNAAADPEVSCFLTANAGSGKTSTLVNRVARLLLRGAKPEHILCVTYTKAAAAEMQGRLY 63

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           E +  W+   D  L+ E+ KI     N  D++ AR L    LETPGGLK+QTIHAFCE +
Sbjct: 64  ERLGGWAVAEDAALAEELRKID---ENPDDLATARALFAKALETPGGLKIQTIHAFCEKL 120

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +++FPLEA ++  F + D+  ++ L ++A +  L
Sbjct: 121 LRRFPLEAGLSPSFQVLDDLVARDLAQKALEGLL 154


>gi|300023817|ref|YP_003756428.1| double-strand break repair helicase AddA [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525638|gb|ADJ24107.1| double-strand break repair helicase AddA [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 1196

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 88/205 (42%), Positives = 119/205 (58%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L ++T   Q  A+DP  SAWV ANAG+GKTH+L  RVLRLLLA   P  +LCLT+TKAAA
Sbjct: 13  LRAETDLHQGNAADPLASAWVRANAGTGKTHVLTLRVLRLLLAGTSPEKILCLTYTKAAA 72

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEMS RV + +  W    ++ L  +I K+ G   +   +  AR L    +ETPGGLKVQT
Sbjct: 73  AEMSRRVFDRLAGWVTADEKELEKDIRKVTGGDVSVETLQLARRLFANAIETPGGLKVQT 132

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAF E ++Q+FPLEA +   F I D+  +  L   A + TL     +    L +A   I
Sbjct: 133 IHAFAERLLQRFPLEAGVPPDFKILDDAAAGDLKARAIEQTLLDATSEPETPLGRALDVI 192

Query: 196 LEISNDEDIETLISDIISNRTALKL 220
           +  + D   + LIS+ +  R  L +
Sbjct: 193 VRYATDTQFDKLISNAVEERRWLDV 217


>gi|254453452|ref|ZP_05066889.1| double-strand break repair helicase AddA [Octadecabacter
           antarcticus 238]
 gi|198267858|gb|EDY92128.1| double-strand break repair helicase AddA [Octadecabacter
           antarcticus 238]
          Length = 1128

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 1/149 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+DPTRS W+SANAGSGKT +L  RV RLLLA   P  +LCLT+TKAAA+EM +R+ 
Sbjct: 10  QIEAADPTRSTWLSANAGSGKTRVLTDRVARLLLAGTRPENVLCLTYTKAAASEMQNRLF 69

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ ++   L  ++ ++        D +S AR L  + +ETPGGLK+QTIH+FC  
Sbjct: 70  QRLGEWAMMAKPALHKQLVELGTDVAIDDDYLSNARTLFASAIETPGGLKIQTIHSFCAG 129

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           ++++FPLEA ++  F   ++  ++ L EE
Sbjct: 130 VLRRFPLEAEVSPQFKEMEDRDAQLLREE 158


>gi|84685773|ref|ZP_01013669.1| Helicase, UvrD/Rep family protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665866|gb|EAQ12340.1| Helicase, UvrD/Rep family protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 1119

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 98/153 (64%), Gaps = 2/153 (1%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +    Q+ A+DP  + W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM
Sbjct: 5   EATQRQVEAADPGGNTWLSANAGSGKTRVLTDRVARLLLNGVEPGHILCLTYTKAAASEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +R+ + + AW+ L D+ L AE+  +        D+ KAR L    +E PGGLK+QTIHA
Sbjct: 65  QNRLFQRLGAWAMLGDDDLRAELDAL--GVMGAPDLRKARRLFARAIEAPGGLKIQTIHA 122

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           FC  I+++FP+EA ++  F   D+  ++ L EE
Sbjct: 123 FCATILRRFPMEAGVSPDFKEMDDRTAQLLQEE 155


>gi|126724545|ref|ZP_01740388.1| ATP-dependent DNA helicase, UvrD/Rep family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126705709|gb|EBA04799.1| ATP-dependent DNA helicase, UvrD/Rep family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 1122

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 120/201 (59%), Gaps = 17/201 (8%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA EM +R+ 
Sbjct: 25  QVRAAAPMESTWLSANAGSGKTRVLTDRVARLLLEGVPPQKVLCLTYTKAAATEMQNRLF 84

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140
             +  W+ L+D  L   + ++ G +P    K     AR L    +ETPGGLK+QTIH+FC
Sbjct: 85  SRLGEWAMLADNELRMALDEL-GVEPIENTKEARRNARTLFARAIETPGGLKIQTIHSFC 143

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIE---EAKKSTLASIMLDNNEELKKAFYEILE 197
            A++++FPLEA ++  F   D+  +K+L E   E   +   +++LD+       F + L 
Sbjct: 144 AALLRRFPLEAGVSPQFREMDDRAAKRLREDVLEELANAPETVVLDD-------FVKHL- 195

Query: 198 ISNDEDIETLISDIISNRTAL 218
             +D+D  +++ +II +R AL
Sbjct: 196 --SDDDPASILMEIIRHRDAL 214


>gi|119385518|ref|YP_916574.1| UvrD-like DNA helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119375285|gb|ABL70878.1| UvrD-like DNA helicase, C-terminal domain [Paracoccus denitrificans
           PD1222]
          Length = 1124

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/163 (42%), Positives = 103/163 (63%), Gaps = 6/163 (3%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++ +    Q+ A+DP RS W++ANAGSGKT +L  RV RLLLA   P  +LCLT+TKAAA
Sbjct: 1   MMDEATLAQVRAADPHRSTWLTANAGSGKTRVLTDRVARLLLAGTAPERILCLTYTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM +R+L  +  W+ L +  L AE+ ++   +    D+  AR L    +ETPGGLKVQT
Sbjct: 61  SEMQNRLLARLGRWAMLPEAELRAELARL--GEAGAPDLPAARRLFARAIETPGGLKVQT 118

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQS----KKLIEEAKK 174
           IH+FC  ++++FP+EA +   F   D+  +     ++IEE  +
Sbjct: 119 IHSFCAGVLRRFPIEAGVPHGFTELDDRSAALIRAEIIEEMAR 161


>gi|58039096|ref|YP_191060.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H]
 gi|58001510|gb|AAW60404.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H]
          Length = 1191

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 113/179 (63%), Gaps = 17/179 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--------------NA 60
           ++I+     Q  ASDP  S +VSA+AGSGKT +L+ R+LRL+L                A
Sbjct: 15  EVIAAADRTQRQASDPRASVFVSASAGSGKTKLLIDRLLRLMLPLYVQTDDGDTILADGA 74

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARH 119
           HPS +LCLT+TKAAAAEM++R+ + + +W  L D  L AE+  +    PN  +  + AR 
Sbjct: 75  HPSRILCLTYTKAAAAEMANRLQQKLGSWVSLPDAKLGAELESLD--VPNTDETRRRARA 132

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           L + +L+ PGGL+++TIHAFC++++++FPLEA++  HF + ++  +   + EA +  LA
Sbjct: 133 LFLCVLDLPGGLRIETIHAFCQSLLRRFPLEASVDPHFTLMEDTDTTLALREAMEDGLA 191


>gi|254439061|ref|ZP_05052555.1| double-strand break repair helicase AddA [Octadecabacter
           antarcticus 307]
 gi|198254507|gb|EDY78821.1| double-strand break repair helicase AddA [Octadecabacter
           antarcticus 307]
          Length = 1128

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/149 (44%), Positives = 102/149 (68%), Gaps = 2/149 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+DPT+S W+SANAGSGKT +L +RV RLLLA   P  +LCLT+TKAAA+EM +R+ 
Sbjct: 10  QIEAADPTQSTWLSANAGSGKTRVLTERVARLLLAGTRPENVLCLTYTKAAASEMQNRLF 69

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ +    L  ++ ++  +     D +S AR L  + +ETPGGLK+QTIH+FC  
Sbjct: 70  QRLGEWAMMPKPALHKQLVELGTEAAIDDDYLSNARTLFASAIETPGGLKIQTIHSFCAG 129

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           ++++FPLEA ++  F    E+++ +L+ E
Sbjct: 130 VLRRFPLEAEVSPQFK-EMEDRAAQLLRE 157


>gi|260575782|ref|ZP_05843778.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2]
 gi|259021935|gb|EEW25235.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2]
          Length = 1090

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 1/155 (0%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +   + Q+ A+DP RS W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 4   NDASARQVQAADPGRSTWLAANAGSGKTRVLTDRVARLLLEGVEPGRILCLTYTKAAASE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+   +  W+ L D+ L A +  +          + KAR L    +ETPGGL++QTI
Sbjct: 64  MQNRLFRRLGGWAMLEDDALRAALADLGVAGAVQPETLGKARQLFARAIETPGGLRIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           H+FC +++++FPLEA ++  F   D+  +  L +E
Sbjct: 124 HSFCASLLRRFPLEAGVSPQFTELDDRAASLLRDE 158


>gi|254476353|ref|ZP_05089739.1| double-strand break repair helicase AddA [Ruegeria sp. R11]
 gi|214030596|gb|EEB71431.1| double-strand break repair helicase AddA [Ruegeria sp. R11]
          Length = 1125

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 73/193 (37%), Positives = 115/193 (59%), Gaps = 3/193 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 11  QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L D+ L++ +T++ +G   +   M++AR L    +ETPGGLK+QTIH+FC +
Sbjct: 71  KRLGEWAMLGDDALTSALTELGEGAIISPEGMAQARTLFARAIETPGGLKIQTIHSFCAS 130

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++++FPLEA ++  F+  ++  +  L  E  +        D   E  K   ++  +  D 
Sbjct: 131 LLRRFPLEAGVSPQFSEMEDRAAMLLRAEIVEDFAQGD--DRYAEEAKLIAQLARVVTDS 188

Query: 203 DIETLISDIISNR 215
           D +TL + I   R
Sbjct: 189 DFDTLTAAICQRR 201


>gi|255262268|ref|ZP_05341610.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62]
 gi|255104603|gb|EET47277.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62]
          Length = 1119

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 123/196 (62%), Gaps = 8/196 (4%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A++P  S W++ANAGSGKT +L  RV RLLL  A P  +LCLT+TKAAA+EM +R+ 
Sbjct: 9   QVRAANPKASTWLAANAGSGKTRVLTDRVARLLLDEAKPEHILCLTYTKAAASEMQNRLF 68

Query: 84  EIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           + + AW+ + D+ L  E+  +    + + + +++AR L    +ETPGGLK+QTIH+FC +
Sbjct: 69  KRLGAWTMMDDDKLRGELCDLGIESRIDTNTLARARVLFAQAIETPGGLKIQTIHSFCAS 128

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++++FPLEA ++  F +  E+++ K++       +A        +   A Y++    +D 
Sbjct: 129 LLRRFPLEAGVSPQF-VEMEDRAAKMLRAEVVDDMA------RGDHTAAVYDLASYVSDS 181

Query: 203 DIETLISDIISNRTAL 218
           D++ ++  I S++ +L
Sbjct: 182 DLDRVLMQITSHKESL 197


>gi|312113012|ref|YP_004010608.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218141|gb|ADP69509.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 1282

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/148 (44%), Positives = 96/148 (64%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +++   +Q  A+DP+ SAWV ANAG+GKTH+LVQR+LRL LA A P ++LCLT TK AAA
Sbjct: 10  LAEASRKQRSAADPSVSAWVRANAGTGKTHVLVQRILRLCLAGAAPRSILCLTFTKNAAA 69

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RVL+ +  W+      L A +  +  +     +++ AR L  T+ + PGGL + TI
Sbjct: 70  EMEARVLKTMGEWATADAATLEAALAALLDRPAEAGELAAARTLFATVTDAPGGLPIMTI 129

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164
           HAFCE ++++F  EAN+   F +  EE+
Sbjct: 130 HAFCERLLRRFSFEANVPPGFTVMTEEE 157


>gi|56551994|ref|YP_162833.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543568|gb|AAV89722.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 1162

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 6/162 (3%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           ++EQL ASDP  + W+SA+AG+GKTH+L  RVLRLLL  A P ++LCLT TKA AAEMS 
Sbjct: 11  EAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAAEMSE 70

Query: 81  RVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           R+ + +  W   L+D+ L  E+  + G + ++  ++ AR L   +L+ PGGL++QTIH+F
Sbjct: 71  RINQRLAKWVIQLNDDELREELQAL-GARYDRDTLALARTLFARVLDAPGGLRIQTIHSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           C++++  FP+EA +   F +    + ++   EAKK TL  I+
Sbjct: 130 CQSLLTAFPVEAGLIPGFQLI---EGREEATEAKK-TLTRIL 167


>gi|260752463|ref|YP_003225356.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551826|gb|ACV74772.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 1162

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 6/162 (3%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           ++EQL ASDP  + W+SA+AG+GKTH+L  RVLRLLL  A P ++LCLT TKA AAEMS 
Sbjct: 11  EAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAAEMSE 70

Query: 81  RVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           R+ + +  W   L+D+ L  E+  + G + ++  ++ AR L   +L+ PGGL++QTIH+F
Sbjct: 71  RINQRLAKWVIQLNDDELREELQAL-GARYDRDTLALARTLFARVLDAPGGLRIQTIHSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           C++++  FP+EA +   F +    + ++   EAKK TL  I+
Sbjct: 130 CQSLLTAFPVEAGLIPGFQLI---EGREEATEAKK-TLTRIL 167


>gi|85705745|ref|ZP_01036842.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. 217]
 gi|85669735|gb|EAQ24599.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. 217]
          Length = 1123

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 115/197 (58%), Gaps = 10/197 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W+SANAGSGKT +L  RV RLLL   +P  +LCLT+TKAAA+EM +R+ 
Sbjct: 11  QVEAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVNPQHILCLTYTKAAASEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCE 141
             + AW+ L+D+ L  E+  + G +   +D  +  AR L    +ETPGGLK+QTIH+FC 
Sbjct: 71  RRLGAWAMLADDALMQEL-DLLGHEGAITDQTLRDARRLFARAIETPGGLKIQTIHSFCA 129

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +++++FPLEA +T  F   ++  +  L  E  +   A             FY +    + 
Sbjct: 130 SLLRRFPLEAGVTPQFTEMEDRTATLLRAEIVEDLAAG-------PHAATFYALARHYSG 182

Query: 202 EDIETLISDIISNRTAL 218
           E +E L +DI+ +RT  
Sbjct: 183 ETLEKLTADIVRHRTGF 199


>gi|77462066|ref|YP_351570.1| UvrD/Rep family helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77386484|gb|ABA77669.1| Helicase, UvrD/Rep family [Rhodobacter sphaeroides 2.4.1]
          Length = 1106

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 110/203 (54%), Gaps = 7/203 (3%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L  +    Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA
Sbjct: 4   LRDEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM +R+   +  W+ L D  L   +  +         +++AR L    +ETPGGL++QT
Sbjct: 64  SEMQNRLFRRLGEWAMLDDAELRRALDALGVAAVGHEVLAQARRLFARAIETPGGLRIQT 123

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  ++++FPLEA ++  F   D+  ++ L EE  +     I  +   +L +A+   
Sbjct: 124 IHSFCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEELADRIAPEVVADLARAY--- 180

Query: 196 LEISNDEDIETLISDIISNRTAL 218
                 ED   L  ++  N   L
Sbjct: 181 ----TGEDFGALAEEVARNAAGL 199


>gi|221641019|ref|YP_002527281.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131]
 gi|221161800|gb|ACM02780.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131]
          Length = 1106

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 7/200 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +    Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM
Sbjct: 7   EASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +R+   +  W+ L D  L   +  +         +++AR L    +ETPGGL++QTIH+
Sbjct: 67  QNRLFRRLGGWAMLDDAELRHALDTLGVAAVGHEVLAQARRLFARAIETPGGLRIQTIHS 126

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  ++++FPLEA ++  F   D+  ++ L EE  +     I      +L +A+      
Sbjct: 127 FCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEEMADCIAPGVVADLARAY------ 180

Query: 199 SNDEDIETLISDIISNRTAL 218
              ED   L  ++  N   L
Sbjct: 181 -TGEDFGALAEEVARNAAGL 199


>gi|149201424|ref|ZP_01878399.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. TM1035]
 gi|149145757|gb|EDM33783.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. TM1035]
          Length = 1123

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/196 (37%), Positives = 112/196 (57%), Gaps = 8/196 (4%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 11  QVEAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVDPQHILCLTYTKAAASEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             + AW+ L+D  L  E+  +  +    +  +  AR L    +ETPGGLK+QTIH+FC +
Sbjct: 71  RRLGAWAMLADAALMQELDLLGHEGAITEQTLRDARRLFARAIETPGGLKIQTIHSFCAS 130

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++++FPLEA++T  F   ++  +  L  E  +   A             FY +    + E
Sbjct: 131 LLRRFPLEADVTPQFTEMEDRTATLLRAEIVEDLAAGPQ-------AATFYALARHYSGE 183

Query: 203 DIETLISDIISNRTAL 218
            +E L ++I+ NR+  
Sbjct: 184 TLEKLTAEIVRNRSGF 199


>gi|254465049|ref|ZP_05078460.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
           Y4I]
 gi|206685957|gb|EDZ46439.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
           Y4I]
          Length = 1117

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 96/148 (64%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 11  QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHVLCLTYTKAAASEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           + +  W+ L D  L+  +T++        D+++AR L    +ETPGGLK+QTIH+FC ++
Sbjct: 71  KRLGEWAMLEDAALTDALTELGEVSTAVEDLAQARTLFARAIETPGGLKIQTIHSFCSSL 130

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171
           +++FPLEA ++  F+  D+   + L  E
Sbjct: 131 LRRFPLEAGVSPQFSEMDDRAGQLLRAE 158


>gi|126460955|ref|YP_001042069.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102619|gb|ABN75297.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
           17029]
          Length = 1106

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 7/200 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +    Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM
Sbjct: 7   EASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +R+   +  W+ L D  L   +  +         +++AR L    +ETPGGL++QTIH+
Sbjct: 67  QNRLFRRLGEWAMLDDAELRHALDTLGVAAVGHEVLAQARRLFARAIETPGGLRIQTIHS 126

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  ++++FPLEA ++  F   D+  ++ L EE  +     I      +L +A+      
Sbjct: 127 FCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEELADRIAPGVVADLARAY------ 180

Query: 199 SNDEDIETLISDIISNRTAL 218
              ED   L  ++  N   L
Sbjct: 181 -TGEDFGALAEEVARNAAGL 199


>gi|254463307|ref|ZP_05076723.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
           HTCC2083]
 gi|206679896|gb|EDZ44383.1| double-strand break repair helicase AddA [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 1122

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 8/196 (4%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W+SANAGSGKT +L  RV RLLLA   P  +LCLT+TKAAAAEM +R+ 
Sbjct: 11  QVDAARPRMSTWLSANAGSGKTRVLTDRVARLLLAQVPPERILCLTYTKAAAAEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L +  L   + ++ +    +K+ +  AR L    +E PGGLK+QTIH+FC  
Sbjct: 71  KRLGEWAMLENSALREALRELGEEGGIDKNALRMARTLFAAAIEAPGGLKIQTIHSFCST 130

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++++FPLEAN++  FA   EE++ +L+ E     +AS       E       +  I+   
Sbjct: 131 VLRRFPLEANVSPQFA-EMEERAAELLREELIEDMAS------GEDATLIMNLATITGAY 183

Query: 203 DIETLISDIISNRTAL 218
           D+  L  +I+  R AL
Sbjct: 184 DLTELSGEIVGQRIAL 199


>gi|163738014|ref|ZP_02145430.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
 gi|161388630|gb|EDQ12983.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
          Length = 1122

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 115/198 (58%), Gaps = 5/198 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 11  QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L D+ L++ +T++       ++ M++AR L    +ETPGGLK+QTIH+FC +
Sbjct: 71  KRLGEWAMLGDDALTSALTELGAHDVISAEGMAQARTLFARAIETPGGLKIQTIHSFCAS 130

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++++FPLEA ++  F+  D+  +  L    +   + +I    N         +     D 
Sbjct: 131 LLRRFPLEAGVSPQFSEMDDRAAVLL----RGEVVEAIANSENPGEAGLIARLARQVTDS 186

Query: 203 DIETLISDIISNRTALKL 220
           D +TL + I   R+  ++
Sbjct: 187 DFDTLTAAICQRRSDFEV 204


>gi|163742590|ref|ZP_02149976.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384175|gb|EDQ08558.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 1122

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 115/198 (58%), Gaps = 5/198 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 11  QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L D+ L++ +T++       ++ M++AR L    +ETPGGLK+QTIH+FC +
Sbjct: 71  KRLGEWAMLGDDALTSALTELGAHDVISAEGMAQARTLFARAIETPGGLKIQTIHSFCAS 130

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++++FPLEA ++  F+  D+  +  L    +   + +I    N         +     D 
Sbjct: 131 LLRRFPLEAGVSPQFSEMDDRAAVLL----RGEVVEAIANSENPGEAGLIARLARQVTDS 186

Query: 203 DIETLISDIISNRTALKL 220
           D +TL + I   R+  ++
Sbjct: 187 DFDTLTAAICQRRSDFEV 204


>gi|329847172|ref|ZP_08262200.1| double-strand break repair helicase AddA [Asticcacaulis
           biprosthecum C19]
 gi|328842235|gb|EGF91804.1| double-strand break repair helicase AddA [Asticcacaulis
           biprosthecum C19]
          Length = 1174

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/152 (46%), Positives = 103/152 (67%), Gaps = 3/152 (1%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A+DP  S +++ANAGSGKT  LV RV RLLL+ A P+ +LC+T+TKAAAAEM  R+ + 
Sbjct: 19  IAADPKASCFLTANAGSGKTSTLVNRVARLLLSRADPAHILCVTYTKAAAAEMQERLFQQ 78

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +  W+   DE L  ++ +I   +P   D+ +AR L    LETPGGLK+QTIHAFCE +++
Sbjct: 79  LGGWAVADDEQLIGDLERI--GEPTH-DLPRARALFAKALETPGGLKIQTIHAFCEKLLR 135

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +FPLEA ++  F + D+  +  L ++A  + L
Sbjct: 136 RFPLEAQLSPAFKVLDDLLADDLADKASTAVL 167


>gi|189182928|ref|YP_001936713.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179699|dbj|BAG39479.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi
           str. Ikeda]
          Length = 1155

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 96/146 (65%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           QL+ASDP  S WVSA+AG+GKT +L  RVLRLLL+ A    +LCLT T AAA EM  RV+
Sbjct: 5   QLIASDPYVSCWVSASAGTGKTKVLTDRVLRLLLSGAKLQKILCLTFTNAAANEMLDRVI 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             + +W+ + + +L A +  + G  P  S + +AR L    L+    + +QTIH+FC+ +
Sbjct: 65  AQLKSWACMDNAMLVASMHNMLGINPTDSQVLRARSLCNEYLQAKENIAIQTIHSFCQNL 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLI 169
           +Q+F +EA I ++F I DE ++K++I
Sbjct: 125 LQKFSVEAGINANFTILDELKTKEII 150


>gi|149912864|ref|ZP_01901398.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. AzwK-3b]
 gi|149813270|gb|EDM73096.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. AzwK-3b]
          Length = 1123

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P RS W+SANAGSGKT +L  RV RLLL +  P  +LCLT+TKAAA+EM +R+ 
Sbjct: 10  QIDAARPDRSTWLSANAGSGKTRVLTDRVARLLLEDVDPRHILCLTYTKAAASEMQNRLF 69

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L D+ LS E+  +  +    +D + KAR L    +E PGGLK+QTIH+FC  
Sbjct: 70  KRLGQWAMLPDDRLSRELQDLGHEGLIDADTLRKARRLFARAIEAPGGLKIQTIHSFCAG 129

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           ++++FPLEA ++  F    E+++  L+       +AS
Sbjct: 130 LLRRFPLEAGVSPQFT-EMEDRTASLLRSEITEAIAS 165


>gi|148284261|ref|YP_001248351.1| ATP-dependent DNA helicase UvrD [Orientia tsutsugamushi str.
           Boryong]
 gi|146739700|emb|CAM79510.1| ATP-dependent helicase, UvrD/rep/AddA family [Orientia
           tsutsugamushi str. Boryong]
          Length = 1154

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 96/146 (65%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           QL+ASDP  S WVSA+AG+GKT +L  RVLRLLL+ A    +LCLT T AAA EM  RV+
Sbjct: 5   QLIASDPYVSCWVSASAGTGKTKVLTDRVLRLLLSGAKLQKILCLTFTNAAANEMLDRVI 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             + +W+ + + +L A +  + G  P  S + +AR L    L+    + +QTIH+FC+ +
Sbjct: 65  AQLKSWACMDNAMLVASMHNMLGINPTDSQVLRARSLCNEYLQAKENIAIQTIHSFCQNL 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLI 169
           +Q+F +EA I ++F I DE ++K++I
Sbjct: 125 LQKFSVEAGINANFTILDELKTKEII 150


>gi|159045978|ref|YP_001534772.1| double-strand break repair helicase AddA [Dinoroseobacter shibae
           DFL 12]
 gi|157913738|gb|ABV95171.1| double-strand break repair helicase AddA [Dinoroseobacter shibae
           DFL 12]
          Length = 1125

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/198 (36%), Positives = 118/198 (59%), Gaps = 11/198 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+DPT S W+SANAGSGKT +L  RV RLLL +  P  +LCLT+TKAAA+EM +R+ 
Sbjct: 13  QIAAADPTSSVWLSANAGSGKTKVLTDRVARLLLEDVPPERILCLTYTKAAASEMQNRLF 72

Query: 84  EIITAWSHLSDEILS---AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
             +  WS L D  L    AE+  +Q  +   +    AR L    +ETPGGLK+QTIH+FC
Sbjct: 73  RTLGGWSMLDDGDLRRRLAELGLLQ-VEITAARCRSARTLFARAIETPGGLKIQTIHSFC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            +++++FP+EA ++  F   D     +L    +++ L  +        + + + + +  +
Sbjct: 132 ASLLRRFPMEAGVSPQFTEMDSRAEAEL----QRAVLRQMAEGPG---RDSLFALAQSVD 184

Query: 201 DEDIETLISDIISNRTAL 218
           + ++  L+ +++S+R AL
Sbjct: 185 ETNLPELMKELLSHREAL 202


>gi|21328716|gb|AAM48722.1| helicase, UvrD/Rep family [uncultured marine proteobacterium]
          Length = 1118

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +S     Q+ A+ P RS W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+
Sbjct: 3   LSDASLRQIEAAHPGRSTWLAANAGSGKTRVLTDRVARLLLDGVMPQNILCLTYTKAAAS 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQT 135
           EM +R+ + +  W+ L D  L  E+  +  ++     D+ +AR L    +E PGGLK+QT
Sbjct: 63  EMQNRLFKRLGRWTMLDDVTLLDELAALGVERDLGPDDIDRARTLFARAVEAPGGLKIQT 122

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           IH+FC AI+++F LEA +   F   DE     L++E
Sbjct: 123 IHSFCAAILRRFSLEAGVNPQFVEIDERAQNLLLDE 158


>gi|241761923|ref|ZP_04760008.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373603|gb|EER63175.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 1162

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 6/162 (3%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           ++EQL ASDP  + W+SA+AG+GKTH+L  RVLRLLL  A P ++LCLT TKA AAEMS 
Sbjct: 11  EAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAAEMSE 70

Query: 81  RVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           R+ + +  W   L+D+ L  E+  + G + ++  ++ AR L   +L+  GGL++QTIH+F
Sbjct: 71  RINQRLAKWVIQLNDDELREELQAL-GARYDRDTLALARTLFARVLDATGGLRIQTIHSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           C++++  FP+EA +   F +    + ++   EAKK TL  I+
Sbjct: 130 CQSLLTAFPVEAGLIPGFQLI---EGREEATEAKK-TLTRIL 167


>gi|86136735|ref|ZP_01055313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. MED193]
 gi|85826059|gb|EAQ46256.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. MED193]
          Length = 1122

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 96/148 (64%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 16  QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHILCLTYTKAAASEMQNRLF 75

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           + +  W+ L D  L+A + ++        D+++AR L    +ETPGGLK+QTIH+FC ++
Sbjct: 76  QRLGEWAMLQDSELTAALGELGEVNTASEDLAQARTLFARAIETPGGLKIQTIHSFCSSL 135

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171
           +++FPLEA ++  F+  ++  +  L  E
Sbjct: 136 LRRFPLEAGVSPQFSEMEDRAASLLRAE 163


>gi|294084828|ref|YP_003551588.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664403|gb|ADE39504.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 1162

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 107/166 (64%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           DLI +   EQ  ASDP  S +VSANAG+GKT +L  RVLRLLL+ A    +LC+T+T+AA
Sbjct: 3   DLIQRASIEQARASDPMASVFVSANAGTGKTKLLTDRVLRLLLSGAEADGILCVTYTRAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM +R+   +  W+ +S   L+ ++  +    P++ ++  AR L   IL+   G +V+
Sbjct: 63  AAEMRNRIYARLARWAVISTADLTKDLQAMGIVAPSQGNIRLARMLFAKILDNDNGPRVE 122

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           T+H+FC++I+++FP+EA I  +  +AD+ +  +L   AK + + S+
Sbjct: 123 TVHSFCQSILRRFPIEAGIAPNAKLADDAEQDRLKSIAKVAVMNSL 168


>gi|126738527|ref|ZP_01754232.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. SK209-2-6]
 gi|126720326|gb|EBA17032.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. SK209-2-6]
          Length = 1126

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 96/148 (64%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 15  QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHILCLTYTKAAASEMQNRLF 74

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           + +  W+ L D  L+A +  +   +    D+++AR L    +ETPGGLK+QTIH+FC ++
Sbjct: 75  KRLGEWAMLEDGKLTAALIDLGEVQITGEDLAQARTLFARAIETPGGLKIQTIHSFCSSL 134

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171
           +++FPLEA ++  F+  ++  +  L  E
Sbjct: 135 LRRFPLEAGVSPQFSEMEDRAAALLRAE 162


>gi|260429599|ref|ZP_05783576.1| double-strand break repair helicase AddA [Citreicella sp. SE45]
 gi|260420222|gb|EEX13475.1| double-strand break repair helicase AddA [Citreicella sp. SE45]
          Length = 1118

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 31/230 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +    Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA EM
Sbjct: 5   EATEAQVRAARPDSSTWLAANAGSGKTRVLTDRVARLLLDGVLPEHILCLTYTKAAATEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
            +R+   + AW+ L DE L AE+ +  ++G  P +  ++ AR L    +ETPGGL++QTI
Sbjct: 65  QNRLFRRLGAWAMLDDEALRAELRQLGLEGALPPER-LAGARTLFARAIETPGGLRIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-----------STLASIMLDNN 185
           H+FC +++++FPLEA ++  F   ++  ++ L  E              + LA  + +N 
Sbjct: 124 HSFCASLLRRFPLEAGVSPQFHEMEDRAAQLLRTEVLDRLSEGPQAGLVADLAQWLPENY 183

Query: 186 EEL-------KKAFY---------EILEISNDEDIETLISDI-ISNRTAL 218
           + L       + AF           + ++  DED E+L+S + + + TAL
Sbjct: 184 DALLAELCGNRAAFIPARSPAEVRALYDLGPDEDAESLLSSVFLGSETAL 233


>gi|114762246|ref|ZP_01441714.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114545270|gb|EAU48273.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. HTCC2601]
          Length = 1125

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +    Q+ A+ P  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA EM
Sbjct: 5   EATEAQVRAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVLPEHILCLTYTKAAATEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIH 137
            +R+   + AW+ L DE L AE+ ++    P   + ++ AR L    +ETPGGL++QTIH
Sbjct: 65  QNRLFRRLGAWAMLDDEALGAELRQLGLDGPLPPERLAGARTLFARAIETPGGLRIQTIH 124

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           +FC +++++FPLEA ++  F   ++  ++ L  E
Sbjct: 125 SFCASLLRRFPLEAGVSPQFHEMEDRAAQLLRAE 158


>gi|260431946|ref|ZP_05785917.1| double-strand break repair helicase AddA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415774|gb|EEX09033.1| double-strand break repair helicase AddA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 1119

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +    Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM
Sbjct: 6   EATERQVQAARPDASTWLAANAGSGKTRVLTDRVARLLLDGVQPQHILCLTYTKAAASEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIH 137
            +R+ + +  W+ L D  L  ++T++  +     D +++AR L    +ETPGGLK+QTIH
Sbjct: 66  QNRLFKRLGEWAMLDDVALLRQLTELGVEGVIDPDRLARARTLFARAIETPGGLKIQTIH 125

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           +FC +++++FPLEA ++  F+  ++  +  L EE
Sbjct: 126 SFCASLLRRFPLEAGVSPQFSEMEDRAAALLREE 159


>gi|84514936|ref|ZP_01002299.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella
           vestfoldensis SKA53]
 gi|84511095|gb|EAQ07549.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella
           vestfoldensis SKA53]
          Length = 1113

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/146 (43%), Positives = 98/146 (67%), Gaps = 1/146 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A++P  S W++ANAGSGKT +L  RV RLLL +  P  +LCLT+TKAAAAEM +R+ 
Sbjct: 10  QVDAANPQISTWLAANAGSGKTRVLTDRVARLLLEDVSPQNILCLTYTKAAAAEMQNRLF 69

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142
           + + AW+ + D+ L A++  +   +   +D +  AR L    +ETPGGLK+QTIH+FC  
Sbjct: 70  KRLGAWAMMQDDSLRADLRGLGVDRSIDADQLRAARTLFARAIETPGGLKIQTIHSFCAG 129

Query: 143 IMQQFPLEANITSHFAIADEEQSKKL 168
           ++++FPLEA ++  F   ++  ++ L
Sbjct: 130 VLRRFPLEAGVSPQFREMEDRAAQLL 155


>gi|56698684|ref|YP_169061.1| ATP-dependent DNA helicase UvrD [Ruegeria pomeroyi DSS-3]
 gi|56680421|gb|AAV97087.1| ATP-dependent DNA helicase, UvrD/Rep family [Ruegeria pomeroyi
           DSS-3]
          Length = 1118

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 100/149 (67%), Gaps = 1/149 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W++ANAGSGKT +L  RV RLLL++  P  +LCLT+TKAAA+EM +R+ 
Sbjct: 11  QVQAARPDTSTWLAANAGSGKTKVLTDRVARLLLSDVQPQHILCLTYTKAAASEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L+D  L A+++ +      + + ++ AR L    +ETPGGLK+QTIH+FC  
Sbjct: 71  KRLGEWAMLADAPLRAQLSDLGVPGAIDDARLAHARTLFARAIETPGGLKIQTIHSFCAT 130

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           ++++FPLEA ++  F+  ++  +  L EE
Sbjct: 131 LLRRFPLEAKVSPQFSEMEDRAAALLREE 159


>gi|254509530|ref|ZP_05121597.1| double-strand break repair helicase AddA [Rhodobacteraceae
           bacterium KLH11]
 gi|221533241|gb|EEE36229.1| double-strand break repair helicase AddA [Rhodobacteraceae
           bacterium KLH11]
          Length = 1119

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 104/160 (65%), Gaps = 3/160 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + L +     Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKA
Sbjct: 1   MTLRNDATERQVQAARPDASTWLAANAGSGKTRVLTDRVARLLLDGVQPQHILCLTYTKA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGL 131
           AA+EM +R+ + +  W+ L+D  L +++T   I+G   N   +++AR L    +ETPGGL
Sbjct: 61  AASEMQNRLFKRLGEWAMLADAPLLSQLTDLGIEGVI-NPDRLAQARTLFARAIETPGGL 119

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           K+QTIH+FC A++++FPLEA ++  FA  ++  +  L +E
Sbjct: 120 KIQTIHSFCAALLRRFPLEAGVSPQFAEMEDRAAALLRDE 159


>gi|146278983|ref|YP_001169142.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557224|gb|ABP71837.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1119

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 115/204 (56%), Gaps = 15/204 (7%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +    Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM
Sbjct: 21  EASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASEM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +R+   +  W+ L D  L A +  +  +      +++AR L    +ETPGGL++QTIH+
Sbjct: 81  QNRLFRRLGEWAMLEDAALRAALDALGVEAVGHEVLAQARRLFARAIETPGGLRIQTIHS 140

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSK----KLIEEAKKSTLASIMLDNNEELKKAFYE 194
           FC  ++++FPLEA ++  F   D+  ++    +++EE    T  +++     EL +A+  
Sbjct: 141 FCATLLRRFPLEAGVSPQFTELDDRAARLLRDEILEEMADRTAPALV----AELARAY-- 194

Query: 195 ILEISNDEDIETLISDIISNRTAL 218
                  E+   L  ++  NR  L
Sbjct: 195 -----TGEEFGALAEEVARNRAGL 213


>gi|114799862|ref|YP_760584.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC
           15444]
 gi|114740036|gb|ABI78161.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC
           15444]
          Length = 1168

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 9/169 (5%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPSTLLCLTHTKAAAAEMSHRV 82
           +P  SA+ +ANAGSGKT +L+ RV RLLL        A P ++LC+T+T+AAA EM  R+
Sbjct: 23  NPDVSAYATANAGSGKTKVLIDRVARLLLRREDGRPGADPDSILCITYTRAAANEMLTRL 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAF 139
              +  W+   D+ L   ++K++G+ P K    D+  AR L    LETPGGL+++TIHAF
Sbjct: 83  FRTLGDWAVKEDDKLREALSKLEGRAPEKYSREDLRDARRLFARALETPGGLRIETIHAF 142

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           C  I+++FPLEA +   FA  ++  +K L + AK   +        +EL
Sbjct: 143 CARILRRFPLEAGVVPGFAEMEDRDAKALWQAAKDRAILEAAQSAPDEL 191


>gi|259418122|ref|ZP_05742041.1| double-strand break repair helicase AddA [Silicibacter sp.
           TrichCH4B]
 gi|259347028|gb|EEW58842.1| double-strand break repair helicase AddA [Silicibacter sp.
           TrichCH4B]
          Length = 1121

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 96/149 (64%), Gaps = 1/149 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 10  QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVEPQHILCLTYTKAAASEMQNRLF 69

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L D  L A +  +  +  +  D +++AR L    +ETPGGLK+QTIH+FC +
Sbjct: 70  QRLGEWAMLPDAKLRAALVDLGAEDASVGDGLAQARTLFARAIETPGGLKIQTIHSFCSS 129

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           ++++FPLEA ++  F+  ++  +  L  E
Sbjct: 130 LLRRFPLEAGVSPQFSEMEDRAAAMLRAE 158


>gi|148555593|ref|YP_001263175.1| double-strand break repair helicase AddA [Sphingomonas wittichii
           RW1]
 gi|148500783|gb|ABQ69037.1| Double-strand break repair helicase AddA [Sphingomonas wittichii
           RW1]
          Length = 1142

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/163 (41%), Positives = 100/163 (61%), Gaps = 7/163 (4%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + +Q  ASDP    W+SA+AG+GKTH+L  RVLRLLL  A P  +LCLT TKA AAEM+ 
Sbjct: 12  QPQQRAASDPRELVWLSASAGTGKTHVLTARVLRLLLGGAAPEAILCLTFTKAGAAEMAE 71

Query: 81  RVLEIITAWSHLSDEI-LSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHA 138
           R+   +  W+   D++ L+ ++T++ G+      + +AR L   +LE P GGL++QTIHA
Sbjct: 72  RIHRRLAHWAGQKDDLKLTQDLTRL-GEDAGPEALKRARQLFARVLEAPGGGLRIQTIHA 130

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           FC+ ++  FP EA +T  F   +  +   L     + TLA ++
Sbjct: 131 FCQTLLAGFPAEAGLTPGFRPIEGREEAAL----ARRTLADLL 169


>gi|84501212|ref|ZP_00999417.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
           batsensis HTCC2597]
 gi|84390503|gb|EAQ02991.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
           batsensis HTCC2597]
          Length = 1117

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/149 (43%), Positives = 94/149 (63%), Gaps = 1/149 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P RS W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA EM +R+ 
Sbjct: 10  QVDAARPDRSTWLAANAGSGKTRVLTDRVARLLLDGVLPQHILCLTYTKAAATEMQNRLF 69

Query: 84  EIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L D+ L  E+  +    +     ++ AR L    +ETPGGLK+QTIH+FC A
Sbjct: 70  KRLGHWAMLPDDQLRTELETLGIEDRVTAGRLNLARTLFARAIETPGGLKIQTIHSFCAA 129

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           ++++FPLEA ++  F   +E  +  L  E
Sbjct: 130 LLRRFPLEAGVSPQFTEMEERDATLLRAE 158


>gi|163732946|ref|ZP_02140390.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och
           149]
 gi|161393481|gb|EDQ17806.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och
           149]
          Length = 1125

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 14/200 (7%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 11  QVDAARPDASTWLAANAGSGKTRVLTDRVARLLLDKVEPEHILCLTYTKAAASEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +  W+ L D  L AE  +  G +   +   + KAR L    +ETPGGLK+QTIH+FC 
Sbjct: 71  KRLGEWAMLEDAAL-AEALRDLGVETTVDAEKLRKARTLFARAIETPGGLKIQTIHSFCA 129

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEIS 199
           +++++FPLEA ++  F+          IEE     L + ++D   +   A    ++    
Sbjct: 130 SLLRRFPLEAGVSPQFS---------EIEERAADLLRAEIIDTMAQGPDAGLIADLARHY 180

Query: 200 NDEDIETLISDIISNRTALK 219
             ED E L   ++ N+ + +
Sbjct: 181 TGEDFEKLAKAVVQNKDSFR 200


>gi|99082686|ref|YP_614840.1| UvrD/REP helicase [Ruegeria sp. TM1040]
 gi|99038966|gb|ABF65578.1| ATP-dependent nuclease subunit A [Ruegeria sp. TM1040]
          Length = 1121

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 94/149 (63%), Gaps = 1/149 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 10  QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVEPQHILCLTYTKAAASEMQNRLF 69

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L D  L A +  +  +     D +++AR L    +ETPGGLK+QTIH+FC +
Sbjct: 70  QRLGEWAMLPDAKLRAALVDLGAEDAAIGDGLAQARTLFARAIETPGGLKIQTIHSFCSS 129

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           ++++FPLEA ++  F   ++  +  L  E
Sbjct: 130 LLRRFPLEAGVSPQFTEMEDRAAAMLRAE 158


>gi|163745129|ref|ZP_02152489.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161381947|gb|EDQ06356.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 1123

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 14/199 (7%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W++ANAGSGKT +L  RV RLLL +  P  +LCLT+TKAAA+EM +R+ 
Sbjct: 12  QIEAARPDASTWLTANAGSGKTRVLTDRVARLLLDDVEPQHILCLTYTKAAASEMQNRLF 71

Query: 84  EIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +  W+ L D+ L + +    +QG+      +  AR L    +ETPGGLK+QTIH+FC 
Sbjct: 72  KRLGEWAMLKDDALRSALADLGVQGEL-TPEQLRNARTLFARAIETPGGLKIQTIHSFCA 130

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEIS 199
           A++++FPLEA ++  F           IE+     L + ++D   E + A    +I    
Sbjct: 131 ALLRRFPLEAQVSPQFT---------EIEDRAADLLRAEIVDEMAEGEDAPLVADIARHY 181

Query: 200 NDEDIETLISDIISNRTAL 218
             ED  +L   I+  R A 
Sbjct: 182 TGEDFASLTRSIVGQRDAF 200


>gi|94496379|ref|ZP_01302956.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94424125|gb|EAT09149.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 1144

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 5/165 (3%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +Q  A+ P    W+SA+AG+GKTH+L  RV RLLL    P  +LCLT TKA AAEM+ R+
Sbjct: 17  DQARAAGPDAHVWLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRI 76

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + + AW  +    L+A++  + G+         AR L   +LE+ GGL++QTIH FC+ 
Sbjct: 77  HDRLAAWVQMDGPALAADLMAL-GEDHGPQMQDHARRLFAEVLESTGGLRIQTIHGFCQQ 135

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           ++  FPLEA +   F   D+ +   L     + TLA +++   EE
Sbjct: 136 LLTAFPLEAELAPGFRPLDQREQSAL----ARQTLADVVVRAQEE 176


>gi|126732963|ref|ZP_01748724.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula
           stellata E-37]
 gi|126706580|gb|EBA05656.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula
           stellata E-37]
          Length = 1123

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +    Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    PS +LCLT+TKAAA EM
Sbjct: 4   EATQRQVDAAAPDASTWLAANAGSGKTRVLTDRVARLLLEGVDPSHILCLTYTKAAATEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKVQTIH 137
            +R+ + + AW+ L +  L  E+  +  +  P+ + + +AR L    +ETPGGL++QTIH
Sbjct: 64  QNRLFKRLGAWAMLPEPDLRDELAALGVETAPSHAFLQEARTLFARAIETPGGLRIQTIH 123

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           +FC +++++FPLEA ++  F   ++  ++ L  E
Sbjct: 124 SFCASLLRRFPLEARVSPQFQEMEDRAAELLRAE 157


>gi|83942010|ref|ZP_00954472.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
           sp. EE-36]
 gi|83847830|gb|EAP85705.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
           sp. EE-36]
          Length = 1125

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 16/204 (7%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W+ ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 12  QIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNGVEPQHILCLTYTKAAASEMQNRLF 71

Query: 84  EIITAWSHLSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           + + AW+ L+D  L   ++++    G  P K  M  AR L    +ETPGGLK+QTIH+FC
Sbjct: 72  KRLGAWAMLTDADLRHSLSELGVKDGFTPEKLRM--ARTLFARAIETPGGLKIQTIHSFC 129

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEI 198
            +++++FPLEA ++  F           IE+     L + ++D   E + A     +  +
Sbjct: 130 ASLLRRFPLEAGVSPQFT---------EIEDRAADLLRAEIVDTMAEGQDAALITTLARM 180

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
              ED   L   I+  R     + 
Sbjct: 181 YTGEDFSKLTRSIVGQREGFATVL 204


>gi|83953059|ref|ZP_00961781.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83842027|gb|EAP81195.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 1125

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 16/204 (7%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W+ ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 12  QIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNGVEPQHILCLTYTKAAASEMQNRLF 71

Query: 84  EIITAWSHLSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           + + AW+ L+D  L   ++++    G  P K  M  AR L    +ETPGGLK+QTIH+FC
Sbjct: 72  KRLGAWAMLTDADLRHSLSELGVEDGFTPEKLRM--ARTLFARAIETPGGLKIQTIHSFC 129

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEI 198
            +++++FPLEA ++  F           IE+     L + ++D   E + A     +  +
Sbjct: 130 ASLLRRFPLEAGVSPQFT---------EIEDRAADLLRAEIVDTMAEGQDAALITTLARM 180

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
              ED   L   I+  R     + 
Sbjct: 181 YTGEDFSKLTRSIVGQREGFATVL 204


>gi|114328674|ref|YP_745831.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316848|gb|ABI62908.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis
           CGDNIH1]
          Length = 1159

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/161 (40%), Positives = 107/161 (66%), Gaps = 1/161 (0%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           + +  Q  ASDP  SA+VSA+AGSGKT +L  R+LRL+L+ AHP  + CLT TKA AAEM
Sbjct: 10  EAERNQRDASDPIVSAFVSASAGSGKTKLLTDRLLRLMLSGAHPGRIQCLTFTKAGAAEM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + R+   + AW  +SD  L   +  +    P+ +   +AR L   +L+ PGG++++TIHA
Sbjct: 70  AIRLRSRLGAWVTMSDAALDQALAALA-FTPDDAARLRARALFAQVLDLPGGMRIETIHA 128

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           FC++++++FPLEA ++ HF + +  + +   +EA+++ LA+
Sbjct: 129 FCQSLLRRFPLEAALSPHFKMIEPAEQEVTRQEAQETMLAA 169


>gi|254488041|ref|ZP_05101246.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101]
 gi|214044910|gb|EEB85548.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101]
          Length = 1125

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 16/197 (8%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W+ ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 12  QIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNEVEPQHILCLTYTKAAASEMQNRLF 71

Query: 84  EIITAWSHLSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           + + AW+ L D  L A + ++       P K  M  AR L    +ETPGGLK+QTIH+FC
Sbjct: 72  KRLGAWAMLKDADLRASLAELGVTDAFTPEKLRM--ARTLFARAIETPGGLKIQTIHSFC 129

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEI 198
            +++++FPLEA ++  F           IE+     L + ++DN  E + A     +   
Sbjct: 130 ASLLRRFPLEAGVSPQFT---------EIEDRAADLLRAEIVDNMAEGRDAPLVTALARH 180

Query: 199 SNDEDIETLISDIISNR 215
              ED   L + I+  R
Sbjct: 181 YTGEDFSKLTNSIVGQR 197


>gi|326403648|ref|YP_004283730.1| double-strand break repair helicase AddA [Acidiphilium multivorum
           AIU301]
 gi|325050510|dbj|BAJ80848.1| double-strand break repair helicase AddA [Acidiphilium multivorum
           AIU301]
          Length = 1157

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 1/130 (0%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           SDP+ SA+V A+AGSGKT +L  R+LRL+L+ A P  +LCLT T+AAAAEM+ R+   + 
Sbjct: 16  SDPSISAFVGASAGSGKTKLLTDRLLRLMLSGATPGRILCLTFTRAAAAEMAIRLRRRLG 75

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            W+  +DE L A++  +     +     +AR L   +L+ PGGL++ T+HAFC++++++F
Sbjct: 76  DWAIATDETLDADLAALD-MPADTGTRHRARMLFGQVLDLPGGLRIDTVHAFCQSLLRRF 134

Query: 148 PLEANITSHF 157
           PLEA I+ HF
Sbjct: 135 PLEAQISPHF 144


>gi|148260455|ref|YP_001234582.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5]
 gi|146402136|gb|ABQ30663.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5]
          Length = 1157

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 1/130 (0%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           SDP+ SA+V A+AGSGKT +L  R+LRL+L+ A P  +LCLT T+AAAAEM+ R+   + 
Sbjct: 16  SDPSISAFVGASAGSGKTKLLTDRLLRLMLSGATPGRILCLTFTRAAAAEMAIRLRRRLG 75

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            W+  +DE L A++  +     +     +AR L   +L+ PGGL++ T+HAFC++++++F
Sbjct: 76  DWAIATDETLDADLAALD-MPADTGTRHRARMLFGQVLDLPGGLRIDTVHAFCQSLLRRF 134

Query: 148 PLEANITSHF 157
           PLEA I+ HF
Sbjct: 135 PLEAQISPHF 144


>gi|110677844|ref|YP_680851.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh
           114]
 gi|109453960|gb|ABG30165.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh
           114]
          Length = 1125

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 95/149 (63%), Gaps = 1/149 (0%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM +R+ 
Sbjct: 11  QVDAARPDASTWLAANAGSGKTRVLTDRVARLLLDKVAPEHILCLTYTKAAASEMQNRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           + +  W+ L D+ L+  +  +  +   +   + KAR L    +ETPGGLK+QTIH+FC +
Sbjct: 71  KRLGEWAMLQDDALAEALRDLGVETAVDAEKLRKARTLFARAIETPGGLKIQTIHSFCAS 130

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           ++++FPLEA ++  F   +E  +  L  E
Sbjct: 131 LLRRFPLEARVSPQFTEIEERAADLLRAE 159


>gi|296117285|ref|ZP_06835876.1| double-strand break repair helicase AddA [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976178|gb|EFG82965.1| double-strand break repair helicase AddA [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 1208

 Score =  125 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 15/166 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NAH--------- 61
           D I+     Q  ASDP  S +VSA+AGSGKT +L+ R+LRL+L     +AH         
Sbjct: 32  DAIALANESQAQASDPQASVFVSASAGSGKTKLLIDRLLRLMLPRPTHDAHGQAVLVPGS 91

Query: 62  -PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            PS +LCLT TKAAAAEM+ R+   +  W  L D  L  E+  +    P       AR L
Sbjct: 92  DPSRILCLTFTKAAAAEMAIRLQNRLGRWVTLPDAALDTELRDL-FVPPEPRTRQVAREL 150

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
              +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + +E  ++
Sbjct: 151 FARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEETDAR 196


>gi|89056557|ref|YP_512008.1| UvrD/REP helicase [Jannaschia sp. CCS1]
 gi|88866106|gb|ABD56983.1| UvrD/REP helicase [Jannaschia sp. CCS1]
          Length = 1120

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/148 (41%), Positives = 86/148 (58%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP  S W+ ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA EM +R+ 
Sbjct: 8   QTRAADPATSTWLGANAGSGKTRVLTDRVARLLLDGVPPERILCLTYTKAAAMEMQNRLF 67

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +  W+   D  L   +  I         +  AR L    +E PGGLK+QTIH+FC ++
Sbjct: 68  SRLGTWAMKDDAALRDTLGAIGVGGLTPELLDTARTLFARAIEAPGGLKIQTIHSFCASV 127

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171
           +++FPLEA ++  F   DE    +L+ +
Sbjct: 128 LRRFPLEARVSPAFTEIDERVQARLLAD 155


>gi|332185666|ref|ZP_08387413.1| double-strand break repair helicase AddA [Sphingomonas sp. S17]
 gi|332014024|gb|EGI56082.1| double-strand break repair helicase AddA [Sphingomonas sp. S17]
          Length = 1148

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 2/153 (1%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           K +Q  ASDPT   W+SA+AG+GKT +L  RV RLLL    P ++LCLT TKA AAEM+ 
Sbjct: 8   KGDQAAASDPTAHVWLSASAGTGKTQVLAARVFRLLLRGVAPESILCLTFTKAGAAEMAQ 67

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAF 139
           R+   + AW  + +  L A++ K  G+        +AR L   +L+ P GGL++QTIH F
Sbjct: 68  RINGRLAAWVRMPETELFADL-KALGETAGPELRERARTLFARVLDAPGGGLRIQTIHGF 126

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           C+ ++  FP+EA +   F   +  +   L  EA
Sbjct: 127 CQGLLAAFPVEAGLAPGFRPLEAREEAVLAREA 159


>gi|209543463|ref|YP_002275692.1| double-strand break repair helicase AddA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531140|gb|ACI51077.1| double-strand break repair helicase AddA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1185

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/181 (36%), Positives = 107/181 (59%), Gaps = 17/181 (9%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------------LL 57
           +D I    + Q  ASDP  S +VSA+AGSGKT +L+ R+LRL                LL
Sbjct: 4   LDAIGLANARQGEASDPGASVFVSASAGSGKTKLLIDRLLRLMLPRPAPDARGDGAGDLL 63

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           A A P+ + CLT TKAAAAEM+ R+ + + +W  L D  L  E+  +    P ++    A
Sbjct: 64  AGADPARIQCLTFTKAAAAEMAIRLQKRLGSWVTLPDASLDRELAFLS-VPPCEATRRAA 122

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           R L   +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + ++  ++  + E+ ++ +
Sbjct: 123 RELFARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEDTDARIAMGESVEAVV 182

Query: 178 A 178
            
Sbjct: 183 G 183


>gi|239947179|ref|ZP_04698932.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921455|gb|EER21479.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 847

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 83/139 (59%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+ 
Sbjct: 5   QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQARIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L  E+  + G KP+  +   A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKYLSLCNAEKLEEELFLMSGNKPSPQETENAKTLYDKILNSNEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADE 162
           ++ FP+EA+IT  F I +E
Sbjct: 125 LKTFPVEADITPEFKILEE 143


>gi|330991806|ref|ZP_08315755.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp.
           SXCC-1]
 gi|329760827|gb|EGG77322.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp.
           SXCC-1]
          Length = 1194

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 17/167 (10%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--------------A 60
           D I      Q  ASDP  S +VSA+AGSGKT +LV R+LRL+L                +
Sbjct: 13  DAIGLANRSQAQASDPQASVFVSASAGSGKTKLLVDRLLRLMLPRDVPDRDGVMTRVPGS 72

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARH 119
            P+ +LCLT TKAAAAEMS R+   +  W  L D  L  E+ ++    P   +  + AR 
Sbjct: 73  DPARILCLTFTKAAAAEMSIRLQNRLGQWVMLPDADLDRELARLS--VPTGVETRRVARE 130

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
           L   +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + +E  ++
Sbjct: 131 LFARVLDLPGGMRIGTIHAFCQSLLRRFPIEAAISPHFTLIEETDAR 177


>gi|238650390|ref|YP_002916242.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic]
 gi|238624488|gb|ACR47194.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic]
          Length = 822

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 79/136 (58%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+   +
Sbjct: 8   ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I+  
Sbjct: 68  KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127

Query: 147 FPLEANITSHFAIADE 162
           FPLEA IT  F I +E
Sbjct: 128 FPLEAGITPEFTILEE 143


>gi|15893037|ref|NP_360751.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7]
 gi|15620238|gb|AAL03652.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7]
          Length = 822

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 79/136 (58%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+   +
Sbjct: 8   ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I+  
Sbjct: 68  KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127

Query: 147 FPLEANITSHFAIADE 162
           FPLEA IT  F I +E
Sbjct: 128 FPLEAGITPEFKILEE 143


>gi|34581275|ref|ZP_00142755.1| ATP-dependent helicase [Rickettsia sibirica 246]
 gi|28262660|gb|EAA26164.1| ATP-dependent helicase [Rickettsia sibirica 246]
          Length = 822

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 79/136 (58%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+   +
Sbjct: 8   ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I+  
Sbjct: 68  KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127

Query: 147 FPLEANITSHFAIADE 162
           FPLEA IT  F I +E
Sbjct: 128 FPLEAGITPEFKILEE 143


>gi|229587088|ref|YP_002845589.1| ATP-dependent helicase [Rickettsia africae ESF-5]
 gi|228022138|gb|ACP53846.1| ATP-dependent helicase [Rickettsia africae ESF-5]
          Length = 822

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 79/136 (58%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+   +
Sbjct: 8   ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I+  
Sbjct: 68  KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127

Query: 147 FPLEANITSHFAIADE 162
           FPLEA IT  F I +E
Sbjct: 128 FPLEAGITPEFKILEE 143


>gi|258543653|ref|YP_003189086.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256634731|dbj|BAI00707.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256637787|dbj|BAI03756.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03]
 gi|256640841|dbj|BAI06803.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07]
 gi|256643896|dbj|BAI09851.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22]
 gi|256646951|dbj|BAI12899.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26]
 gi|256650004|dbj|BAI15945.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32]
 gi|256652994|dbj|BAI18928.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656048|dbj|BAI21975.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12]
          Length = 1190

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 11/172 (6%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------LLANAHPSTLL 66
           ISQ  ++Q LASDP+ S +VSA+AGSGKT +L+ R+LRL          +L  + P+ +L
Sbjct: 13  ISQANAQQALASDPSASVFVSASAGSGKTKLLIDRLLRLMLPRLAEDGSILPGSSPARIL 72

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           CLT TKAAAAEMS R+ + +  W  LSDE L  E+  +      ++   +AR L   +L+
Sbjct: 73  CLTFTKAAAAEMSIRLQKRLGRWVTLSDEELDKELAGLYVPCTEET-RRRARALFAEVLD 131

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            PGG+++ TIHAFC++++++FPLEA++  HF + +E  +   ++   ++ L 
Sbjct: 132 LPGGMRIGTIHAFCQSLLRRFPLEASMNPHFTVMEETDASLALQACVEAILG 183


>gi|103485653|ref|YP_615214.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
 gi|98975730|gb|ABF51881.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
          Length = 1166

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 94/153 (61%), Gaps = 8/153 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP R  W+ A+AG+GKT +L  RVLRLLL    P  +LC+T TKA AAEM+HR+ 
Sbjct: 14  QRAAADPARHVWLGASAGTGKTQVLSARVLRLLLDGVSPEAILCITFTKAGAAEMAHRIH 73

Query: 84  EIITAWSHLSDEILSAEIT------KIQGKKPN-KSDMSKARHLLITILETPGG-LKVQT 135
           + +  W  + D  L  ++       ++ G      + +++AR L  T++++PGG ++VQT
Sbjct: 74  QRLAKWVRMEDGELRLDLQALGIDLELHGHDDGVPALIARARALFATVIDSPGGAIRVQT 133

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           IH+FC+ ++  FPLEA +   F   +E+++  L
Sbjct: 134 IHSFCQTLLASFPLEAKLLPGFRAIEEDEAGAL 166


>gi|307292809|ref|ZP_07572655.1| double-strand break repair helicase AddA [Sphingobium
           chlorophenolicum L-1]
 gi|306880875|gb|EFN12091.1| double-strand break repair helicase AddA [Sphingobium
           chlorophenolicum L-1]
          Length = 1147

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           W+SA+AG+GKTH+L  RV RLLL    P  +LCLT TKA AAEM+ RV + + AW  +S 
Sbjct: 30  WLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRVHDRLAAWVQMSG 89

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEANI 153
             L+A++  + G+   +     AR L   +LE T GGL++QTIH FC+ ++  FPLEA++
Sbjct: 90  PALAADLMAL-GEDHGQEMQDVARRLFAEVLESTGGGLRIQTIHGFCQQLLTAFPLEADL 148

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              F   D+ +   L     + TLA + +   ++  +A  E L+
Sbjct: 149 PPGFRPLDQREQAGL----ARQTLADMAVVAQQQGDEALIEALQ 188


>gi|157828959|ref|YP_001495201.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|157801440|gb|ABV76693.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 822

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 78/136 (57%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+   +
Sbjct: 8   ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I+  
Sbjct: 68  KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127

Query: 147 FPLEANITSHFAIADE 162
           FP EA IT  F I +E
Sbjct: 128 FPSEAGITPEFTILEE 143


>gi|165933684|ref|YP_001650473.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa]
 gi|165908771|gb|ABY73067.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa]
          Length = 822

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 78/136 (57%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+   +
Sbjct: 8   ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I+  
Sbjct: 68  KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127

Query: 147 FPLEANITSHFAIADE 162
           FP EA IT  F I +E
Sbjct: 128 FPSEAGITPEFTILEE 143


>gi|157826193|ref|YP_001493913.1| ATP-dependent helicase [Rickettsia akari str. Hartford]
 gi|157800151|gb|ABV75405.1| ATP-dependent helicase [Rickettsia akari str. Hartford]
          Length = 818

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 81/139 (58%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    P+ +LCLT T +AA EM  R+ 
Sbjct: 5   QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPTNILCLTFTNSAAIEMKARIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S    E L  E+  + G KP   ++  A+ L   IL++   L + TIHAFC+ I
Sbjct: 65  SKLKHLSLCDAENLENELFLMSGNKPLPQEIENAKTLYDKILKSNEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADE 162
           +  FPLEA IT  F I +E
Sbjct: 125 LNTFPLEAGITPEFKILEE 143


>gi|87200013|ref|YP_497270.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135694|gb|ABD26436.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444]
          Length = 1161

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 3/197 (1%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMS 79
           K  Q  A  P R+ W+SA+AG+GKT +L  RVLRLLL +   P  LLCLT TKA AAEM+
Sbjct: 8   KENQAHAVHPQRTVWLSASAGTGKTQVLSARVLRLLLQDGVEPEQLLCLTFTKAGAAEMA 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTIHA 138
            RV E++ +W  L +  L+ ++  I G   +   +++AR     +L+ PGG L+++TIHA
Sbjct: 68  TRVNEVLASWVRLPEIELAQQLRAI-GAPFDPGTVARARSRFAAVLDCPGGGLRIETIHA 126

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC+ ++  FP+EA +       ++     L+ +     L       +EEL  A   +   
Sbjct: 127 FCQWLLASFPVEAGLRPGTRAMEDRDRALLVRQVLAEMLVEAGERGDEELLDALATLSRR 186

Query: 199 SNDEDIETLISDIISNR 215
            +++ +E  +    S R
Sbjct: 187 MSEDQVEAFLLRCASAR 203


>gi|294011636|ref|YP_003545096.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S]
 gi|292674966|dbj|BAI96484.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S]
          Length = 1147

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           W+SA+AG+GKTH+L  RV RLLL    P  +LCLT TKA AAEM+ RV + + AW  + +
Sbjct: 30  WLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRVHDRLAAWVLMDE 89

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEANI 153
             L  ++  + G++      ++AR L   +LE T GGL++QTIH FC+ ++  FPLEA++
Sbjct: 90  ADLFHDLEAL-GEESGPEARNRARRLFAEVLESTGGGLRIQTIHGFCQQLLTAFPLEADL 148

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              F   D+ +   L     + TLA + +   E+  KA  + L+
Sbjct: 149 PPGFRPLDQREQATL----ARQTLADMAVVAQEQHDKALMDALQ 188


>gi|67458566|ref|YP_246190.1| ATP-dependent helicase [Rickettsia felis URRWXCal2]
 gi|67004099|gb|AAY61025.1| ATP-dependent helicase [Rickettsia felis URRWXCal2]
          Length = 815

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 81/139 (58%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    P+ +LCLT T AA+ EM  R+ 
Sbjct: 5   QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPANILCLTFTNAASIEMQARIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S    + L  E+  + G KP   ++  A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKHLSLCDTKKLEEELFLMSGNKPLPQEIENAKTLYDKILNSNEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADE 162
           ++ FPLEA IT  F I +E
Sbjct: 125 LKTFPLEAGITPEFKILEE 143


>gi|157803400|ref|YP_001491949.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel]
 gi|157784663|gb|ABV73164.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel]
          Length = 872

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 81/136 (59%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ASDP  S WVSA+AG+GKT +L  R LRLL+    P+ +LCLT T AAA EM  R+   +
Sbjct: 8   ASDPKYSVWVSASAGTGKTKVLTDRFLRLLIKGVEPANILCLTFTNAAAVEMQARINSKL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              S  + E L  E+  + G KP + ++  A+ L   IL +   L + TIHAFC+ I++ 
Sbjct: 68  KYLSLCNAEKLEEELFLMLGNKPLQPELENAKTLYDKILNSNEPLNIYTIHAFCQKILKT 127

Query: 147 FPLEANITSHFAIADE 162
            PLEA IT  F I +E
Sbjct: 128 CPLEAGITPEFKILEE 143


>gi|157964875|ref|YP_001499699.1| ATP-dependent helicase [Rickettsia massiliae MTU5]
 gi|157844651|gb|ABV85152.1| ATP-dependent helicase [Rickettsia massiliae MTU5]
          Length = 822

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/136 (44%), Positives = 79/136 (58%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+   +
Sbjct: 8   ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              S  + E L   +  + G KP+  +   A+ L   IL +   L + TIHAFC+ I++ 
Sbjct: 68  KYLSLCNAEKLEEALFLMSGNKPSPQETENAKTLYDKILNSNKLLNIYTIHAFCQKILKT 127

Query: 147 FPLEANITSHFAIADE 162
            PLEA IT  F I +E
Sbjct: 128 VPLEAGITPEFKILEE 143


>gi|51473902|ref|YP_067659.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington]
 gi|51460214|gb|AAU04177.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington]
          Length = 823

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 100/181 (55%), Gaps = 10/181 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           AS+P  S WVSA+AG+GKT IL+ R LRLL+    P+ +LCLT T AAA EM  R+   +
Sbjct: 8   ASNPNTSVWVSASAGTGKTKILIDRFLRLLITGTEPTNILCLTFTNAAAIEMQARINSKL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              +    E L+ E+  + G KP   ++   + L   +L +   L + TIHAFC+ I++ 
Sbjct: 68  KHLALCDTEKLANELFLMSGNKPLAQEIENTKTLYYKLLNSHEPLNIYTIHAFCQKILKT 127

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKK--------STLASIMLDNNEE--LKKAFYEIL 196
           FPLEA IT  F I +E + + +  + K         + L  I+L+   E  L+  F EI+
Sbjct: 128 FPLEAGITPEFKILEETKLQDIFLKIKNEIYLSDEHNKLIQILLNRFHEMTLQDIFTEII 187

Query: 197 E 197
           E
Sbjct: 188 E 188


>gi|329113820|ref|ZP_08242591.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum
           DM001]
 gi|326696830|gb|EGE48500.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum
           DM001]
          Length = 1190

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/172 (38%), Positives = 108/172 (62%), Gaps = 11/172 (6%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------LLANAHPSTLL 66
           ISQ  ++Q LASDP+ S +VSA+AGSGKT +L+ R+LRL          +   + P+ +L
Sbjct: 13  ISQANAQQALASDPSASVFVSASAGSGKTKLLIDRLLRLMLPRLAEDGSIQPGSSPARIL 72

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           CLT TKAAAAEMS R+ + +  W  L DE L  E+  +     +++   +AR L   +L+
Sbjct: 73  CLTFTKAAAAEMSIRLQKRLGRWVTLLDEELDKELAGLYVPCTDET-RRRARALFAEVLD 131

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            PGG+++ TIHAFC++++++FPLEA++  HF + +E  +   ++   ++ L 
Sbjct: 132 LPGGMRIGTIHAFCQSLLRRFPLEASMNPHFTVMEETDASLALQSCVEAILG 183


>gi|15604569|ref|NP_221087.1| ATP-dependent nuclease subunit A (addA) [Rickettsia prowazekii str.
           Madrid E]
 gi|3861264|emb|CAA15163.1| ATP-DEPENDENT NUCLEASE SUBUNIT A (addA) [Rickettsia prowazekii]
 gi|292572376|gb|ADE30291.1| ATP-dependent helicase [Rickettsia prowazekii Rp22]
          Length = 822

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 81/136 (59%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           AS+P  S WVSA+AG+GKT IL+ R LRLL+    P+ +LCLT T AAA EM  R+   +
Sbjct: 8   ASNPNTSVWVSASAGTGKTKILIDRFLRLLITGTEPTNILCLTFTNAAAIEMQARINSKL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              +    E L  E+  + G KP   +++  + L   +L +   L + TIHAFC+ I++ 
Sbjct: 68  KYLALCDAEKLENELFLMSGNKPLPQEIANTKTLYYKLLNSHEPLNIYTIHAFCQKILKT 127

Query: 147 FPLEANITSHFAIADE 162
           FPLEA IT  F I +E
Sbjct: 128 FPLEAGITPEFKILEE 143


>gi|91205173|ref|YP_537528.1| ATP-dependent helicase [Rickettsia bellii RML369-C]
 gi|157827491|ref|YP_001496555.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389]
 gi|91068717|gb|ABE04439.1| ATP-dependent helicase [Rickettsia bellii RML369-C]
 gi|157802795|gb|ABV79518.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389]
          Length = 809

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 109/199 (54%), Gaps = 6/199 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+   +   +LCLT T AA+ EM  R+ 
Sbjct: 5   QQQASDPDYSIWVSASAGTGKTKILTDRFLRLLIKGVNFQNILCLTFTNAASIEMQLRIS 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +  +S    + L  E+  + G+KP   ++  A++L   +L+    L + TIHAFC+ I
Sbjct: 65  NKLKTFSLCDPKQLEQELFLMSGQKPLALELENAKNLYSKLLDNNEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++ FP+EA IT  F I +E Q + +  + +     S   ++N+ +K       EI+    
Sbjct: 125 LKIFPVEAGITPEFQILEETQLQDIFLKIRNEIYLSD--EHNDLIKTLLNRFHEIT---- 178

Query: 204 IETLISDIISNRTALKLIF 222
           ++ + S+II  +   K +F
Sbjct: 179 LQDIFSEIIDEKIKFKKLF 197


>gi|85373841|ref|YP_457903.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84786924|gb|ABC63106.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 1150

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 106/174 (60%), Gaps = 7/174 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           L+   +  Q  A DP  S W+SA+AG+GKT +L  RVLRLLL  +  P +LLCLT TKA 
Sbjct: 6   LVFPLEGNQAAAVDPRDSVWLSASAGTGKTQVLSARVLRLLLQKHCEPESLLCLTFTKAG 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKV 133
           AAEM+ RV +++ +W  + D  L+A++  I G   + +  ++AR L   +L+ P GGL++
Sbjct: 66  AAEMATRVNDVLASWVRMKDGDLAADLKAI-GAPIDDATRARARTLFAKVLDCPGGGLRI 124

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            TIHAF + ++  FP E+++      A E++ ++L+    +  L+ ++L   E+
Sbjct: 125 DTIHAFSQWLLAAFPEESDLVPG-TRAMEDRERELL---AREVLSELLLAAEED 174


>gi|296283899|ref|ZP_06861897.1| ATP-dependent exoDNAse beta subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 1158

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81
           EQ  A+DP  S W+SA+AG+GKT +L  RVLRLLL     P ++LCLT TKA AAEM+ R
Sbjct: 3   EQGHAADPGHSVWLSASAGTGKTQVLSARVLRLLLQPGVEPGSILCLTFTKAGAAEMATR 62

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFC 140
           V E +  W  + + +L+  +  I G K + + ++ AR L   +L+ P GGL++ TIHAF 
Sbjct: 63  VNETLARWVRMEETLLAQHLRAI-GAKVDPTTLAHARTLFTRVLDCPGGGLRIDTIHAFA 121

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           + ++  FP EA +       D+     L  E     +A+    +N  L
Sbjct: 122 QYLLAAFPEEAGLEPGTVAMDDRTRGLLAREVLTELVANADEADNSAL 169


>gi|42520239|ref|NP_966154.1| UvrD/Rep/AddA family helicase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409977|gb|AAS14088.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 1089

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 90/146 (61%), Gaps = 15/146 (10%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P  S WV+A+AG+GKT IL+ RVLRLLL N     +LCLT T AAA EM +R+  I+
Sbjct: 21  AINPNFSVWVNASAGTGKTKILIDRVLRLLLENKR--NILCLTFTNAAANEMENRIHSIL 78

Query: 87  TAWSHLSDEILSAEITKIQ-----------GKKPNKSDMSKARHLLITILETPGGLKVQT 135
           + W+  SD +L+A++ ++            G + NK  +++AR L  + LE   GL +QT
Sbjct: 79  SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSRKNKDYLTRARRLF-SELENL-GLTIQT 136

Query: 136 IHAFCEAIMQQFPLEANITSHFAIAD 161
           IHAFC  ++  FP+EA I  +  +++
Sbjct: 137 IHAFCYKLISSFPIEAGIAPNCTLSE 162


>gi|85708411|ref|ZP_01039477.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1]
 gi|85689945|gb|EAQ29948.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1]
          Length = 369

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 93/150 (62%), Gaps = 3/150 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
           QL A++P  + W+SA+AG+GKT +L  RVLRLLL     PS +LCLT TKA AAEM++R+
Sbjct: 12  QLGAANPRDNVWLSASAGTGKTQVLSARVLRLLLTPGVEPSQILCLTFTKAGAAEMANRI 71

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCE 141
             ++  W  L    L+ E+  + G   +   +++AR L  ++L+ P GGL++ TIHAF +
Sbjct: 72  NAVLARWVRLEAGALARELKHL-GADFDPETLARARTLFASVLDCPGGGLRIDTIHAFSQ 130

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            ++  FP EA++T      ++ + + L  E
Sbjct: 131 WLLGNFPEEADLTPGARPMEDRERELLARE 160


>gi|326387825|ref|ZP_08209431.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207871|gb|EGD58682.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 1159

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 4/148 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
           Q+ A DP R+ W+SA+AG+GKT +L  RVLRLLL  +  P  +LCLT TKA AAEM+ R+
Sbjct: 18  QMHAVDPDRTVWLSASAGTGKTQVLTSRVLRLLLQPDVEPDQILCLTFTKAGAAEMATRI 77

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCE 141
            E +  W  + D  L+  +  I G   +   + +AR     +L+ P GGL+++TIHAF +
Sbjct: 78  GEKLADWVRMDDVTLATHLQAI-GAPFDPVALDRARSRFAAVLDCPGGGLRIETIHAFSQ 136

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLI 169
            ++  FP EA +    A A E++ + L+
Sbjct: 137 WLLSAFPEEAGLRPG-ARAMEDRDRDLL 163


>gi|149184293|ref|ZP_01862611.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21]
 gi|148831613|gb|EDL50046.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21]
          Length = 1159

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 7/177 (3%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79
           K  Q L+ +P  S W+SA+AG+GKT +L  RVLRLLL   A PS +LCLT TKA AAEM+
Sbjct: 9   KDAQGLSVNPEESVWLSASAGTGKTQVLSARVLRLLLQPGADPSQILCLTFTKAGAAEMA 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHA 138
            RV  ++  W  +    L+ E+  + G   +    S+AR L   +L+ P GGL++ TIHA
Sbjct: 69  VRVNAVLARWVRMDAAQLAKELGYL-GASIDPETQSRARSLFARVLDCPGGGLRIDTIHA 127

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           F + ++  FP EA +    +   E++ + L+    +  L+ ++ + +  +++A  E+
Sbjct: 128 FAQYLLGAFPSEAGVLPG-SQPMEDRDRDLLS---RDVLSDLLSEGDPHIREAVAEM 180


>gi|225630221|ref|YP_002727012.1| helicase, UvrD/Rep family [Wolbachia sp. wRi]
 gi|225592202|gb|ACN95221.1| helicase, UvrD/Rep family [Wolbachia sp. wRi]
          Length = 1099

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 29/160 (18%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P  S WV+A+AG+GKT IL+ RVLRLLL N     +LCLT T AAA EM +R+  I+
Sbjct: 5   AINPNFSVWVNASAGTGKTKILIDRVLRLLLENKR--NILCLTFTNAAANEMENRIHSIL 62

Query: 87  TAWSHLSDEILSAEITKIQ-------------------------GKKPNKSDMSKARHLL 121
           + W+  SD +L+A++ ++                          G + NK  +++AR L 
Sbjct: 63  SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPYLSSQCVTLGSRKNKDYLTRARRLF 122

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161
            + LE   GL +QTIHAFC  ++  FP+EA I  +  +++
Sbjct: 123 -SELENL-GLTIQTIHAFCYKLISSFPIEAGIAPNCTLSE 160


>gi|190570633|ref|YP_001974991.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019116|ref|ZP_03334923.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356905|emb|CAQ54283.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995225|gb|EEB55866.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 1089

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 84/137 (61%), Gaps = 6/137 (4%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P  S WVSA+AG+GKT IL+ RVLRLLL N     +LCLT T AAA EM  R+   +
Sbjct: 5   AINPNFSVWVSASAGTGKTKILIDRVLRLLLENKR--NILCLTFTNAAANEMEDRIYSTL 62

Query: 87  TAWSHLSDEILSAEITKIQG--KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           + W+   + IL A++ ++     + NK  +++AR L  + LE   GL +QTIHAFC  ++
Sbjct: 63  SKWAIYPEGILVADLEQLAQCVTRENKDYLTRARRLF-SELENL-GLNIQTIHAFCYKLI 120

Query: 145 QQFPLEANITSHFAIAD 161
             FP EA I  +  +++
Sbjct: 121 SSFPTEAGIAPNCTLSE 137


>gi|220935292|ref|YP_002514191.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996602|gb|ACL73204.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1147

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 92/162 (56%), Gaps = 7/162 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           +LA+DP+ +  V A+AGSGKT++LV R+LRLLLA A P  +L +T T+ AA EM  R+ E
Sbjct: 15  MLATDPSLNISVFASAGSGKTYLLVTRILRLLLAGARPDGILAVTFTRLAAGEMQSRLTE 74

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +  W  L D  L   +  + G   + +   +AR L    L     ++  T HAFC+ ++
Sbjct: 75  RLREWQTLDDTALDRALADM-GVSVDDAVRERARRLFEQTLLADRPVRATTFHAFCQDLL 133

Query: 145 QQFPLEANITSHFAIADEEQSKK------LIEEAKKSTLASI 180
            +FPLEA +   F +AD E+  +      L+ EA ++  A++
Sbjct: 134 ARFPLEARVPPGFELADNERELQDRAWDALVSEATRAPDATV 175


>gi|99035028|ref|ZP_01314824.1| hypothetical protein Wendoof_01000338 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 438

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 29/160 (18%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P  S WV+A+AG+GKT IL+ RVLRLLL N     +LCLT T AAA EM +R+  I+
Sbjct: 5   AINPNFSVWVNASAGTGKTKILIDRVLRLLLENKR--NILCLTFTNAAANEMENRIHSIL 62

Query: 87  TAWSHLSDEILSAEITKIQ-------------------------GKKPNKSDMSKARHLL 121
           + W+  SD +L+A++ ++                          G + NK  +++AR L 
Sbjct: 63  SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPYLSSQCVTLGSRKNKDYLTRARRLF 122

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161
            + LE   GL +QTIHAFC   +  FP+EA I  +  +++
Sbjct: 123 -SELENL-GLTIQTIHAFCYKSISSFPIEAGIAPNCTLSE 160


>gi|60117407|gb|AAX14460.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila mojavensis]
          Length = 208

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 33/176 (18%)

Query: 7   FQEHSETIDLISQTKSEQLL----ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           F  +    +L++  K   LL    A +P  S WV+A+AG+GKT IL+ RVLRLLL N   
Sbjct: 35  FLHYMYNANLVNFYKVLALLMRSNAINPNFSVWVNASAGTGKTKILIDRVLRLLLENKR- 93

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ----------------- 105
             +LCLT T AAA EM +R+  I++ W+  SD +L+A++ ++                  
Sbjct: 94  -NILCLTFTNAAANEMENRIHSILSKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPY 152

Query: 106 --------GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                   G + NK  +++AR L  + LE   GL +QTIHAFC  ++  FP+EA +
Sbjct: 153 LSSQCVTLGSRKNKDYLTRARRLF-SELENL-GLTIQTIHAFCYKLISSFPIEAGM 206


>gi|162146539|ref|YP_001600998.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785114|emb|CAP54658.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1184

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 17/181 (9%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---------- 63
           +D I    + Q  ASDP  S +VSA+AGSGKT +L+ R+LRL+L    P+          
Sbjct: 4   LDAIGLANARQGEASDPGASVFVSASAGSGKTKLLIDRLLRLMLPRPAPTRGGTGRGTCL 63

Query: 64  ------TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
                  + CLT TKAAAAEM+ R+ +      + +  +     T +      + D  + 
Sbjct: 64  RGRTRRAIQCLTFTKAAAAEMAIRLQKPAGELGNAARRV-PGPGTGLPVGPAVRGDTPRG 122

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             +   +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + ++  ++  + E+ ++ +
Sbjct: 123 TRMFARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEDTDARIAMGESVEAVV 182

Query: 178 A 178
            
Sbjct: 183 G 183


>gi|269958568|ref|YP_003328355.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel]
 gi|269848397|gb|ACZ49041.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel]
          Length = 867

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 6/144 (4%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  E+  R
Sbjct: 9   QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+H+FC 
Sbjct: 67  VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123

Query: 142 AIMQQFPLEANITSHFAIADEEQS 165
           +++  FP E  +++ F + +  +S
Sbjct: 124 SLVASFPAETGVSADFEMRELSES 147


>gi|56417018|ref|YP_154092.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries]
 gi|56388250|gb|AAV86837.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries]
          Length = 867

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 6/144 (4%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  E+  R
Sbjct: 9   QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+H+FC 
Sbjct: 67  VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123

Query: 142 AIMQQFPLEANITSHFAIADEEQS 165
           +++  FP E  +++ F + +  +S
Sbjct: 124 SLVASFPAETGVSADFEMRELSES 147


>gi|255003370|ref|ZP_05278334.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Puerto Rico]
          Length = 867

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 6/136 (4%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  E+  R
Sbjct: 9   QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+H+FC 
Sbjct: 67  VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123

Query: 142 AIMQQFPLEANITSHF 157
           +++  FP E  +++ F
Sbjct: 124 SLVASFPAETGVSADF 139


>gi|254995195|ref|ZP_05277385.1| hypothetical protein AmarM_04376 [Anaplasma marginale str.
           Mississippi]
          Length = 866

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 6/136 (4%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  E+  R
Sbjct: 9   QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+H+FC 
Sbjct: 67  VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123

Query: 142 AIMQQFPLEANITSHF 157
           +++  FP E  +++ F
Sbjct: 124 SLVASFPAETGVSADF 139


>gi|222475386|ref|YP_002563803.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Florida]
 gi|255004493|ref|ZP_05279294.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Virginia]
 gi|222419524|gb|ACM49547.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Florida]
          Length = 867

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 6/136 (4%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  E+  R
Sbjct: 9   QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+H+FC 
Sbjct: 67  VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123

Query: 142 AIMQQFPLEANITSHF 157
           +++  FP E  +++ F
Sbjct: 124 SLVASFPAETGVSADF 139


>gi|58617374|ref|YP_196573.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Gardel]
 gi|58416986|emb|CAI28099.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Gardel]
          Length = 857

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 4/131 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           W+SA+AG+GKT ILV RVL+LL+       +LCLT T AAA EM+ R+   ++AW+ L+D
Sbjct: 14  WISASAGTGKTRILVNRVLKLLITGHQ--NILCLTFTNAAAYEMTERIHSTLSAWTTLTD 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L  ++ +I        ++ +AR L  +I      L ++TIH+FC  ++  FP+EA I+
Sbjct: 72  TELKTDLQEIIHSNITAQELHQARRLFNSIHNI--SLSIKTIHSFCYQLISAFPIEAGIS 129

Query: 155 SHFAIADEEQS 165
            +  + D  +S
Sbjct: 130 PNCIVKDLSES 140


>gi|57239354|ref|YP_180490.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579320|ref|YP_197532.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57161433|emb|CAH58357.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417946|emb|CAI27150.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 857

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 4/131 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           W+SA+AG+GKT ILV RVL+LL+       +LCLT T AAA EM+ R+   ++AW+ L+D
Sbjct: 14  WISASAGTGKTRILVNRVLKLLITGHQ--NILCLTFTNAAAYEMTERIHSTLSAWTTLTD 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L  ++ +I        ++ +AR L  +I      L ++TIH+FC  ++  FP+EA I+
Sbjct: 72  TELKTDLQEIIHSNITVQELHQARRLFNSIHNI--SLSIKTIHSFCYQLISAFPIEAGIS 129

Query: 155 SHFAIADEEQS 165
            +  + D  +S
Sbjct: 130 PNCIVKDLSES 140


>gi|73667245|ref|YP_303261.1| UvrD/REP helicase [Ehrlichia canis str. Jake]
 gi|72394386|gb|AAZ68663.1| UvrD/REP helicase [Ehrlichia canis str. Jake]
          Length = 854

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 5/141 (3%)

Query: 26  LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           +A++P  +  W+SA+AG+GKT  LV RVLRLL+   H + +LCLT T AAA EM+ R+  
Sbjct: 4   IATNPFYNFIWISASAGTGKTRTLVNRVLRLLIT-GHKN-ILCLTFTNAAAHEMTERIHS 61

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I++ W+ L +E L  E+  I       ++  +AR L   +      L ++TIH+FC  ++
Sbjct: 62  ILSTWTILKNEELKKELQDIIPTNITLTEYKRARELFNNLQNL--SLSIKTIHSFCYQLI 119

Query: 145 QQFPLEANITSHFAIADEEQS 165
             FP+E  I+ +  I D  +S
Sbjct: 120 STFPIETGISPNCTIKDFSES 140


>gi|309782347|ref|ZP_07677073.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA]
 gi|308918883|gb|EFP64554.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA]
          Length = 1173

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+I+
Sbjct: 22  ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81

Query: 87  TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +   DE +  E I +   ++   + +  AR L   +LE+P  + + T H +  ++++
Sbjct: 82  AQLAGADDESVVRELIARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSLLR 141

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + +    ++   E + +L  EA       ++ +++ +L+ A+  + ++  D    
Sbjct: 142 GAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHADLRAAYESLADLVGDFQAG 199

Query: 206 TLISDIISNRT 216
            L+  +   R+
Sbjct: 200 RLLDAMFHQRS 210


>gi|68171208|ref|ZP_00544613.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999363|gb|EAM86007.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 860

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 5/141 (3%)

Query: 26  LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           +A++P  S  W+SA+AG+GKT ILV RVLRLL+   H + +LCLT T  AA EM+ R+  
Sbjct: 4   IATNPFYSFIWISASAGTGKTKILVNRVLRLLVT-GHKN-ILCLTFTNTAAHEMTERIHS 61

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           II+ W+ L +E L   +  I        +  +AR L   +      L ++TIH+FC  ++
Sbjct: 62  IISTWAILKNEELKKALKDIIPTNITPKEYKRARELFNNLQNV--SLSIKTIHSFCYQLI 119

Query: 145 QQFPLEANITSHFAIADEEQS 165
             FP+E  I    +I D  +S
Sbjct: 120 STFPIETGIAPDCSIKDFSES 140


>gi|88658223|ref|YP_507207.1| ATP-dependent DNA helicase UvrD [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599680|gb|ABD45149.1| ATP-dependent DNA helicase, UvrD/Rep family [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 860

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 5/141 (3%)

Query: 26  LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           +A++P  S  W+SA+AG+GKT ILV RVLRLL+   H + +LCLT T  AA EM+ R+  
Sbjct: 4   IATNPFYSFIWISASAGTGKTKILVNRVLRLLVT-GHKN-ILCLTFTNTAAHEMTERIHS 61

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           II+ W+ L +E L   +  I        +  +AR L   +      L ++TIH+FC  ++
Sbjct: 62  IISTWAILKNEELKKALKDIIPTNITPKEYKRARELFNNLQNV--SLSIKTIHSFCYQLI 119

Query: 145 QQFPLEANITSHFAIADEEQS 165
             FP+E  I    +I D  +S
Sbjct: 120 STFPIETGIAPDCSIKDFSES 140


>gi|241662730|ref|YP_002981090.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240864757|gb|ACS62418.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 1173

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+I+
Sbjct: 22  ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81

Query: 87  TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +   DE +  E I +   ++   + +  AR L   +LE+P  + + T H +  ++++
Sbjct: 82  AQLAGADDEGVVRELIARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSLLR 141

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + +    ++   E + +L  EA       ++ +++ +L+ A+  + ++  D    
Sbjct: 142 GAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHADLRAAYESLADLVGDFQAG 199

Query: 206 TLISDIISNRT 216
            L+  +   R+
Sbjct: 200 RLLDAMFHQRS 210


>gi|83749759|ref|ZP_00946735.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
 gi|207743470|ref|YP_002259862.1| homologous recombinational repair protein, atp-dependent exodnase
           (exonuclease v) beta subunit (contains helicase and
           exonuclease domains) [Ralstonia solanacearum IPO1609]
 gi|83723579|gb|EAP70781.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
 gi|206594867|emb|CAQ61794.1| homologous recombinational repair protein, atp-dependent exodnase
           (exonuclease v) beta subunit (contains helicase and
           exonuclease domains) [Ralstonia solanacearum IPO1609]
          Length = 1177

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+I+
Sbjct: 22  ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSD----MSKARHLLITILETPGGLKVQTIHAFCEA 142
              +   D   +A + ++  +  ++ D    ++ AR L   +LE+P  + + T H +   
Sbjct: 82  AQLAGADD---AAAVRELVARTVDERDAPGLVATARGLYARVLESPSRMAIDTFHGWFGG 138

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           +++  PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D 
Sbjct: 139 LLRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDF 196

Query: 203 DIETLISDIISNRT 216
               L+  + + R+
Sbjct: 197 QAGRLLDAMFAQRS 210


>gi|207723138|ref|YP_002253537.1| homologous recombinational repair protein, atp-dependent exodnase
           (exonuclease v) beta subunit (contains helicase and
           exonuclease domains) [Ralstonia solanacearum MolK2]
 gi|206588331|emb|CAQ35294.1| homologous recombinational repair protein, atp-dependent exodnase
           (exonuclease v) beta subunit (contains helicase and
           exonuclease domains) [Ralstonia solanacearum MolK2]
          Length = 1177

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+I+
Sbjct: 22  ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSD----MSKARHLLITILETPGGLKVQTIHAFCEA 142
              +   D   +A + ++  +  ++ D    ++ AR L   +LE+P  + + T H +   
Sbjct: 82  AQLAGADD---AAAVRELVARTVDERDAPGLVATARGLYARVLESPSRMAIDTFHGWFGG 138

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           +++  PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D 
Sbjct: 139 LLRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDF 196

Query: 203 DIETLISDIISNRT 216
               L+  + + R+
Sbjct: 197 QAGRLLDAMFAQRS 210


>gi|187928127|ref|YP_001898614.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|187725017|gb|ACD26182.1| UvrD/REP helicase [Ralstonia pickettii 12J]
          Length = 1173

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+I+
Sbjct: 22  ACEPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81

Query: 87  TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +   DE +  E + +   ++   + +  AR L   +LE+P  + + T H +  ++++
Sbjct: 82  AQLAAADDEGVVRELVARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSLLR 141

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + +    ++   E + +L  EA       ++ +++ EL+ A+  + ++  D    
Sbjct: 142 GAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHAELRAAYETLADLVGDFQAG 199

Query: 206 TLISDIISNRT 216
            L+  +   R+
Sbjct: 200 RLLDAMFHQRS 210


>gi|300704439|ref|YP_003746042.1| helicase, uvrd subfamily [Ralstonia solanacearum CFBP2957]
 gi|299072103|emb|CBJ43435.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CFBP2957]
          Length = 1177

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R+LRLLLA A P+ +L +T T+ AA EM  R+L+I+
Sbjct: 22  ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAITFTRKAAEEMRQRLLDIL 81

Query: 87  TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +   D  +  E + +   ++     ++ AR L   +LE+P  + + T H +   +++
Sbjct: 82  AQLAGADDAAVVRELVARTVDERDAPGLVAAARGLYARVLESPSRMAIDTFHGWFGGLLR 141

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D    
Sbjct: 142 GAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQAG 199

Query: 206 TLISDIISNRT 216
            L+  + + R+
Sbjct: 200 RLLDAMFAQRS 210


>gi|300691831|ref|YP_003752826.1| helicase, uvrD subfamily [Ralstonia solanacearum PSI07]
 gi|299078891|emb|CBJ51552.1| putative helicase, uvrD subfamily [Ralstonia solanacearum PSI07]
          Length = 1178

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+I+
Sbjct: 22  ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81

Query: 87  TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +   D     E + +   ++     ++ AR L   +LE+P  + + T H +   +++
Sbjct: 82  AQLAGADDAAAVRELVARTVDEREALGLVAVARGLYARVLESPSRMAIDTFHGWFGGLLR 141

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D    
Sbjct: 142 GAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDALVDLVGDFQAG 199

Query: 206 TLISDIISNRT 216
            L+  + + R+
Sbjct: 200 RLLDAMFAQRS 210


>gi|299067242|emb|CBJ38439.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CMR15]
          Length = 1177

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R+LRLLLA A P+ +L +T T+ AA EM  R+L+I+
Sbjct: 22  ACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAITFTRKAAEEMRQRLLDIL 81

Query: 87  TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +   D  +  E + +   ++     ++ AR L   +LE+P  + + T H +   +++
Sbjct: 82  AQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESPSRMAIDTFHGWFGGLLR 141

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D    
Sbjct: 142 GAPLSSGVPQGASL--REDAGRLRREAWAPFWRGLLAEEHAELRAAYDTLVDLVGDFQAG 199

Query: 206 TLISDIISNRT 216
            L+  + + R+
Sbjct: 200 RLLDAMFAQRS 210


>gi|17545909|ref|NP_519311.1| hypothetical protein RSc1190 [Ralstonia solanacearum GMI1000]
 gi|17428204|emb|CAD14892.1| probable homologous recombinational repair protein, atp-dependent
           exodnase (exonuclease v) beta subunit (contains helicase
           and exonuclease domains) [Ralstonia solanacearum
           GMI1000]
          Length = 1177

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+ +
Sbjct: 22  ACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDSL 81

Query: 87  TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +   D  +  E + +   ++     ++ AR L   +LE+P  + + T H +   +++
Sbjct: 82  AQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESPSRMAIDTFHGWFGGLLR 141

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D    
Sbjct: 142 GAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQAG 199

Query: 206 TLISDIISNRT 216
            L+  + + R+
Sbjct: 200 RLLDAMFAQRS 210


>gi|149927015|ref|ZP_01915273.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105]
 gi|149824236|gb|EDM83456.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105]
          Length = 1078

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 6/196 (3%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A +P  S  V A AGSGKT +L  R+ RLLL+ A P  +L +T T+ AA EM  R+  +
Sbjct: 11  IACNPANSVVVEACAGSGKTWLLTARLFRLLLSGARPDQILAITFTRKAAQEMQERLFGL 70

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   + LSD+ LS  +T+ +G   N+++++KAR L   +L    G+ + T H +  ++ Q
Sbjct: 71  LRECALLSDDKLSTLLTE-RGAVANEANLNKARALAGEVLTNSRGVTIDTFHGWFASLCQ 129

Query: 146 QFPLEANITSHFAIADEEQSKKLI-EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
             PL     S F+   E   + L   +       + +L++  EL  AF  ++   +   +
Sbjct: 130 MAPL----ASGFSRQSEPTDQTLFWMDMAIDVFTANLLNDQSELLPAFDTLVSQMDRAVV 185

Query: 205 ETLISDIISNRTALKL 220
             ++   ++NR A  L
Sbjct: 186 RQVLQHALTNRVACSL 201


>gi|58584432|ref|YP_198005.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418748|gb|AAW70763.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 1119

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 34/164 (20%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +P  S WV+A+AG+GKT IL+ RVLRLLL N     + CLT T AAA EM  R+  I++ 
Sbjct: 7   NPNFSVWVNASAGTGKTKILIDRVLRLLLENKR--NIFCLTFTNAAANEMESRIHNILSK 64

Query: 89  WSHLSDE-------------------------ILSAEITKIQGKKPNKSDMSKARHLLIT 123
           W+  SD                           LS++   ++ + P   +     H LI 
Sbjct: 65  WAVCSDNELIASLEQLDLSLLLLQHHYPPSHPFLSSQCLTLRSRWPQTKNSEVFNHYLIQ 124

Query: 124 I------LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161
                  LE    L +QT+HAFC  ++  FP EA I  +  +++
Sbjct: 125 ARRLFSELEN-LDLTIQTVHAFCYKLISSFPAEAGIVPNCTLSE 167


>gi|291333833|gb|ADD93516.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C13]
          Length = 597

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 30/209 (14%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP +S  VSA AGSGKT ++ QRVLRLL     P  +LC+T T+ AAAEM+ R+   +
Sbjct: 10  ALDPQQSFIVSAPAGSGKTGLITQRVLRLLRTVESPEQILCITFTRKAAAEMALRIHNAL 69

Query: 87  --TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                +   D+   A+I  +         +  ++ +   +++ P  L++QTI  FC  I 
Sbjct: 70  RDALINPRPDDPYKAQIWDLAAAA-----IEHSKQMDWDLMDMPNRLRIQTIDGFCRYIA 124

Query: 145 QQFPLEA----------NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            QF LE           NI S + IA      KL E++      +++L +          
Sbjct: 125 SQFALETEIGVLPEPSDNIVSLYRIAARNLLDKLEEDSDTGRYVAVLLAHMG-------- 176

Query: 195 ILEISNDEDIETLISDIISNRTA-LKLIF 222
               +N E  E L+S+++SNR   L LIF
Sbjct: 177 ----NNIERCERLLSELLSNREQWLPLIF 201


>gi|90415966|ref|ZP_01223899.1| UvrD/REP helicase family protein [marine gamma proteobacterium
           HTCC2207]
 gi|90332340|gb|EAS47537.1| UvrD/REP helicase family protein [marine gamma proteobacterium
           HTCC2207]
          Length = 1147

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 20/204 (9%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP++S  VSA AGSGKT ++ QRVLRLL    +P  +L +T T+ AA EM+ R+   +
Sbjct: 13  ALDPSQSFIVSAPAGSGKTGLITQRVLRLLCTVENPEEILSITFTRKAAREMASRIHSAL 72

Query: 87  --TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
              A++   D    A+   +       + + + R L   +L+ PG L++QTI  FC  I 
Sbjct: 73  RQAAYTPRPDNEYEAQTWDLAA-----AAVERNRQLGWNLLDMPGRLRIQTIDGFCRYIA 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SN 200
            QF LE    + F    E   +  I      + A  +LD  EE      ++  I     N
Sbjct: 128 SQFALE----TKFGPIPEPSEQPQIH---YQSAARALLDKIEEAGPVAEQLAVILVHTGN 180

Query: 201 D-EDIETLISDIISNRTA-LKLIF 222
           D    ETL+S+++  R   L LI+
Sbjct: 181 DMARCETLLSELLGKREQWLPLIY 204


>gi|94970649|ref|YP_592697.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552699|gb|ABF42623.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus
           Koribacter versatilis Ellin345]
          Length = 1135

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 111/204 (54%), Gaps = 13/204 (6%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAA 74
           I+    E+    D TRS  V A AGSGKT +L+QR L LL   +   P ++L +T T+ A
Sbjct: 11  IAPDADERAKVLDATRSFIVQAPAGSGKTELLMQRYLTLLAHESVTTPESVLAITFTRKA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM +RVL+ + + +  + E   A ++    +K     M++ R +   IL+ P  L+++
Sbjct: 71  AAEMRNRVLKALESANGPAPESAHALLSWELARKV----MARDRAMGWNILQNPEQLEIR 126

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEELKKAFY 193
           T+ +FCE I  + PL A +    AIA  E  + L  EA + TL  +ML D   E ++A  
Sbjct: 127 TVDSFCEKIANRTPLLAGLGRSPAIA--EDFEPLYSEAAQRTL--LMLGDEKAETREAMS 182

Query: 194 EILEISND--EDIETLISDIISNR 215
           ++L   ++  + ++ LI +++  R
Sbjct: 183 QVLADQDNSFDRVQGLIVELLKRR 206


>gi|95929583|ref|ZP_01312325.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95134280|gb|EAT15937.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 1101

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 8/168 (4%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           TIDL+        LA DPTRS  V A AGSGKT +L+QR L LL     P  +L +T T+
Sbjct: 3   TIDLVDAPARR--LAVDPTRSCLVRAPAGSGKTELLIQRFLALLATVPRPDAILAITFTR 60

Query: 73  AAAAEMSHRVLE-IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAAEM  RVL+ ++ A   L D+    + T     +   + + +   L   + + P  L
Sbjct: 61  KAAAEMRQRVLDALLAAQQPLPDQAGEHQRTTY---RLATAVLQRNETLAWNLFDHPQQL 117

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           ++QTI +F  +++ + P  + +    AI+D  Q ++L  +A +  LA+
Sbjct: 118 QIQTIDSFNASLVARMPWLSRLGGLPAISD--QPRQLYRQAVRQLLAA 163


>gi|319763161|ref|YP_004127098.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317117722|gb|ADV00211.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 1095

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 106/201 (52%), Gaps = 19/201 (9%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AG+GKT +LV R+LR LL  + P  +L +T TK AA EM  R+ E 
Sbjct: 21  IACDPARSVAVEACAGAGKTWMLVSRMLRALLDGSAPHEILAITFTKKAAGEMRQRLQEW 80

Query: 86  ITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           +  ++H + E L  E I +  G +  +    + R+L   +L +   L+++T H++  A++
Sbjct: 81  LEQFAHAAPEDLEKELIARGIGTEAARGKREQLRNLYQQLLASGRPLQIRTFHSWFAALL 140

Query: 145 QQFPL----EANITSHFA-IADEEQSKKLI----------EEAKKSTLASIMLDNNEELK 189
              PL    E  + +H+  + D+ Q+K  +          ++A ++   +I+  +    +
Sbjct: 141 STAPLALLQERGLPTHYELLEDDAQAKAEVWRPFLEAVAGDDALRADYEAIVAVHG---R 197

Query: 190 KAFYEILEISNDEDIETLISD 210
              ++ LE + D+ +E L+SD
Sbjct: 198 SQTHKALEAALDKRVEFLLSD 218


>gi|330825224|ref|YP_004388527.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329310596|gb|AEB85011.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 1095

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 106/201 (52%), Gaps = 19/201 (9%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AG+GKT +LV R+LR LL  + P  +L +T TK AA EM  R+ E 
Sbjct: 21  IACDPARSVAVEACAGAGKTWMLVSRMLRALLDGSAPHEILAITFTKKAAGEMRQRLQEW 80

Query: 86  ITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           +  ++H + E L  E I +  G +  +    + R+L   +L +   L+++T H++  A++
Sbjct: 81  LEQFAHAAPEDLEKELIARGIGLEAARGKREQLRNLYQQLLASGRPLQIRTFHSWFAALL 140

Query: 145 QQFPL----EANITSHFA-IADEEQSKKLI----------EEAKKSTLASIMLDNNEELK 189
              PL    E  + +H+  + D+ Q+K  +          ++A ++   +I+  +    +
Sbjct: 141 STAPLALLQERGLPTHYELLEDDAQAKAEVWRPFLEAVAGDDALRADYEAIVAVHG---R 197

Query: 190 KAFYEILEISNDEDIETLISD 210
              ++ LE + D+ +E L+SD
Sbjct: 198 SQTHKALEAALDKRVEFLLSD 218


>gi|329911425|ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545902|gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1090

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 5/191 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP  S  V A AGSGKT +LV R+LRLLLA   PS +L +T T+ AA EM  R+++++
Sbjct: 23  ACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGTAPSEMLAITFTRKAAQEMRDRLIQLL 82

Query: 87  TAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
              +   D+ +   + +  I   + N + M  AR L   +L +P  L + T H++   ++
Sbjct: 83  RELALAPDDTVRTLLLERGIAASELN-ALMPLARGLYEKVLASPQALSIDTFHSWFAKLI 141

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           +  PL + +   +++     +  L  +A    +  +  D   E+++A   + E+  D + 
Sbjct: 142 RLAPLASGVPHGYSLT--AATGALALDAYSRFMQVLNEDGQSEVRQALQHLYELVGDWNA 199

Query: 205 ETLISDIISNR 215
             L+   +  R
Sbjct: 200 RKLLDAFVGKR 210


>gi|291613181|ref|YP_003523338.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1]
 gi|291583293|gb|ADE10951.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1]
          Length = 1134

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 6/155 (3%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           LA DP  S  V A AGSGKT +LV R++RLLL  A PS +L +T T+ AA EM  R+   
Sbjct: 5   LALDPKHSIVVEACAGSGKTWLLVSRIVRLLLDGAQPSQILAITFTRKAAQEMQARLQLW 64

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   +   D  +     +   +  ++S + +AR L  ++L    G+ + T H +   +MQ
Sbjct: 65  LRDLAMADDAAVRKFFAERGLESLSESQLQRARSLYGSVLLAQPGITISTFHGWFMQVMQ 124

Query: 146 QFPLEANITSHFAIAD------EEQSKKLIEEAKK 174
           + PL A++    ++ +      EE  ++L+E+ +K
Sbjct: 125 RAPLNADVMLGMSLLERAGSEQEEAWEELLEQMRK 159


>gi|145589486|ref|YP_001156083.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047892|gb|ABP34519.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1185

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           Q  S+ +  + +    + LA DP +S  VSA AGSGKT +LV R++RLLL +  P  +L 
Sbjct: 7   QAMSKVLSEVEKQAYSESLACDPHQSVIVSACAGSGKTWLLVARMVRLLLDDVKPQEILA 66

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILE 126
           LT T+ AA EM  R+  ++  +S + D+ L  E I +       +S + KA+ L   +L 
Sbjct: 67  LTFTRKAAQEMRDRLYGLLEHFSKIDDDSLMQELIARGLNVDQARSYLLKAKALYEEVLA 126

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            P  + + T H +   ++   P+   I   F +   E +K+L  E
Sbjct: 127 NPQPIVIDTFHGWFGRLLGAAPVSLGIQPGFTL--REDAKRLQSE 169


>gi|74316051|ref|YP_313791.1| DNA helicase/exodeoxyribonuclease V subunit A [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055546|gb|AAZ95986.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 1089

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A  P RSA V A AGSGKT +LV R+LRLLLA A PS LL +T T+ AA EM+ R+ E 
Sbjct: 9   IALSPNRSAVVEACAGSGKTWLLVSRMLRLLLAGAAPSELLAITFTRKAAQEMTDRLHEW 68

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +   + L+D+       + +    ++ D  + +AR LL  +L    G  V T H +   +
Sbjct: 69  LRVLA-LADDATVRAFLREREVPADEIDALLPRARGLLEAVLSAQPGPTVTTFHGWFLDL 127

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           +++ PLEA +     + + E   +L+ E ++   A
Sbjct: 128 LKRAPLEAGLPWGAPLLERES--ELLNEVRERLFA 160


>gi|192360802|ref|YP_001982657.1| UvrD/REP helicase domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190686967|gb|ACE84645.1| UvrD/REP helicase domain protein [Cellvibrio japonicus Ueda107]
          Length = 1163

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 13/196 (6%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +L A DP RS  VSA AGSGKT +L QRVL+LL     P  +L +T T+ AA EM  R+L
Sbjct: 20  RLAAIDPERSFAVSAPAGSGKTGLLTQRVLQLLAHCEQPEEILAITFTRKAAGEMQDRIL 79

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +  W    DE    +    +  +  ++ + +       +L +P  L++ TI + C AI
Sbjct: 80  HAL--W-QAQDEPEPNDPHARRTWRLAQAALKRDSEFGWQLLHSPQRLRITTIDSLCRAI 136

Query: 144 MQQFPLEANITSHFAIADE-EQSKKL-IEEAKKSTLASIMLDNNEELKKAFYEILE--IS 199
            QQ PL + + +     ++ EQ+ +L + E  K       LD    L++    +L    +
Sbjct: 137 TQQLPLASGLGAQPDTLEQPEQAYRLAVRELFKQ------LDKESPLREHLARLLRHLDN 190

Query: 200 NDEDIETLISDIISNR 215
           N + +E L++++++ R
Sbjct: 191 NLQTVEDLLANLLAKR 206


>gi|77919306|ref|YP_357121.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Pelobacter
           carbinolicus DSM 2380]
 gi|77545389|gb|ABA88951.1| ATP-dependent exoDNase (exonuclease V) beta subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 1118

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 6/151 (3%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +L+QR+L LL     P  +L +T T+ AA EM  R++  +
Sbjct: 17  ALDPARSFIVQAPAGSGKTELLIQRILALLGGVQQPEEVLAITFTRKAAGEMRDRLVRAL 76

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A      +   A  T    +   ++D   ARH    +LE P  L VQTI +FC +++++
Sbjct: 77  EAARQPEPQAEHARTTWRLARAVLEND---ARHDW-RLLENPVRLAVQTIDSFCASLVRR 132

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            P  +   +  AI   E +++L  +A +  L
Sbjct: 133 MPWLSRFGAQAAIV--EDARELYRQAAERVL 161


>gi|119475989|ref|ZP_01616341.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143]
 gi|119450616|gb|EAW31850.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143]
          Length = 1153

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 13/147 (8%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +++ A DP+ S  V+A AGSGKT +L QRVLRLL     P  +L +T T+ AAAEM HR+
Sbjct: 9   QRVKALDPSCSVCVTAPAGSGKTELLSQRVLRLLATVGQPEEILAITFTRKAAAEMHHRI 68

Query: 83  LEIITAWS-----HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ +   S     H S ++LS ++         +  + + +    ++LE  G LK+QTI 
Sbjct: 69  IQALRDASTLDQPHQSHKLLSWQLA--------RQVLDRDQEHGWSLLENTGRLKIQTID 120

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQ 164
           +    + +Q P+ +N  +   I++  Q
Sbjct: 121 SLSAHLTRQMPILSNFGAQPKISEYPQ 147


>gi|292492977|ref|YP_003528416.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
 gi|291581572|gb|ADE16029.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
          Length = 1159

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 11/192 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE-I 85
           A +P +S  V A AGSGKT +L QR L LL     P  ++ +T T+ AAAEM +R++E +
Sbjct: 15  ALNPHQSFIVQAPAGSGKTELLTQRYLVLLARVEAPEEIVAITFTRKAAAEMRYRIVEAL 74

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I+A  +   +   A  T    +   + D  K   L       P  L++QTI + C ++ +
Sbjct: 75  ISARENQPPQAEPARTTWELARAVGRRDADKGWEL----ERHPSRLRIQTIDSLCASLTR 130

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE--D 203
           Q PL +   +   I   E+S+ L  +A ++TL  +  ++  E   +   +L   N++   
Sbjct: 131 QMPLLSRFGAQPGIT--EESENLYRQAARATLTEV--ESGAEWSASVEVLLRHLNNDWGK 186

Query: 204 IETLISDIISNR 215
           IETL+S +++ R
Sbjct: 187 IETLLSAMLARR 198


>gi|270157153|ref|ZP_06185810.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968]
 gi|289164442|ref|YP_003454580.1| UvrD/REP helicase family protein [Legionella longbeachae NSW150]
 gi|269989178|gb|EEZ95432.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968]
 gi|288857615|emb|CBJ11455.1| putative UvrD/REP helicase family protein [Legionella longbeachae
           NSW150]
          Length = 1084

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L+  T+  Q  A+DP+ S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA
Sbjct: 2   LVDSTQRSQ--ATDPSLSYIVQAPAGSGKTEILTQRYLRLLSTVKAPEQIVALTFTRKAA 59

Query: 76  AEMSHRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           +EM  R+ L +  A +H        ++T     K   SD     H    +L+ PG L+V 
Sbjct: 60  SEMRERILLALQQAANHQPANSPHQQMTLDFADKALHSDA----HYQWNLLQQPGRLRVI 115

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TI + C++I Q  PL     ++  I D+  S  L    +     ++     +E  K    
Sbjct: 116 TIDSLCQSINQAIPLLEKQIAYAQITDKTSSHYL-NAGRHCIQYAMATPQYQEAIKTL-- 172

Query: 195 ILEISNDED-IETLISDIISNR 215
           +L + N +D +  L S+++S R
Sbjct: 173 LLHVDNRQDRLLDLFSELLSQR 194


>gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
 gi|125862238|gb|ABN57427.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
          Length = 1080

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 37/158 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ +   A D + S  V+A AG+GKTH+LVQ+ L LL +      +L LT T+ AA EM 
Sbjct: 4   TERQARAALDHSTSKCVTAGAGTGKTHVLVQKYLSLLESGVGVGNILALTFTEKAAGEMK 63

Query: 80  HRVLEIITA-----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            RV   I       W  + DE L A                                KV 
Sbjct: 64  IRVRRAIAEKEGERWDAIRDEFLWA--------------------------------KVS 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           T H+FC +++++F + A +   FA+ DE ++ +L EEA
Sbjct: 92  TFHSFCASVLREFSIGAGVGPSFAVLDEGEAFRLREEA 129


>gi|326317369|ref|YP_004235041.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374205|gb|ADX46474.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1182

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 2/126 (1%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+LE 
Sbjct: 25  IACDPARSVAVEACAGAGKTWMLVSRILRALLEGCEPHEILAITFTKKAAGEMRQRLLEW 84

Query: 86  ITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           + A+S      L  E+    I  ++  +   ++ + L + +L     ++++T H++  A+
Sbjct: 85  LEAFSRTPLPALRGELQARGIPAEQATEEACARLQGLFLQVLGAGRPVQIRTFHSWFAAL 144

Query: 144 MQQFPL 149
           +   PL
Sbjct: 145 LGTAPL 150


>gi|121607642|ref|YP_995449.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121552282|gb|ABM56431.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 1140

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 3/126 (2%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+ E 
Sbjct: 29  IACDPARSVAVQACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQEW 88

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKA--RHLLITILETPGGLKVQTIHAFCEAI 143
           +  ++    E LSAE+   +G +P ++   +A  ++L   +L++   ++++T H++  A+
Sbjct: 89  LEEFAQAPPERLSAELVA-RGMRPERALEQRAALQNLYRQLLDSGRPVQIRTFHSWFAAL 147

Query: 144 MQQFPL 149
           +   PL
Sbjct: 148 LGMAPL 153


>gi|171463387|ref|YP_001797500.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171192925|gb|ACB43886.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 1173

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 4/154 (2%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           Q  SE+  A DP RS  VSA AGSGKT  LV R++RLLL +  P  +L LT T+ AA EM
Sbjct: 8   QVYSEKF-ACDPQRSVIVSACAGSGKTWSLVARMVRLLLDDVKPQEILALTFTRKAAQEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
             R+  ++  +S + D  L  E I +   K   +  + KA+ L   +L  P  + + T H
Sbjct: 67  RDRLYGMLEQFSKIDDASLIKELIARGMEKAQAEKYLPKAKALYEQVLANPQPIVIDTFH 126

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            +   ++   P+   I   F +   E +K+L  E
Sbjct: 127 GWFGRLLGAAPVSLGIQPGFKL--REDAKRLQAE 158


>gi|120611309|ref|YP_970987.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120589773|gb|ABM33213.1| DNA helicase/exodeoxyribonuclease V, subunit A [Acidovorax citrulli
           AAC00-1]
          Length = 1168

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+LE 
Sbjct: 25  IACDPARSVAVEACAGAGKTWMLVSRILRALLEGCEPHEILAITFTKKAAGEMRQRLLEW 84

Query: 86  ITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           + A+S      L  E+    I  ++      ++ + L + +L     ++++T H++  A+
Sbjct: 85  LEAFSRTPLPALRGELLARGIPAEQATDDACARLQGLFLQVLGAGRPVQIRTFHSWFAAL 144

Query: 144 MQQFPL 149
           +   PL
Sbjct: 145 LGTAPL 150


>gi|160872666|ref|ZP_02062798.1| UvrD/REP helicase [Rickettsiella grylli]
 gi|159121465|gb|EDP46803.1| UvrD/REP helicase [Rickettsiella grylli]
          Length = 1135

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 32/233 (13%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           E+  A DP  S  V A AGSGKT +LV+R L LL    +P  ++ +T T+ AA EM  R+
Sbjct: 13  ERQRALDPKTSFIVQAPAGSGKTELLVRRYLTLLARVPYPEAIIAITFTRKAANEMRLRI 72

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI------------TILETPGG 130
           +  +T  +H         IT +Q       D  K RH L              +L  P  
Sbjct: 73  MTALTV-AH------EKNITAVQ-------DKDKERHFLAQKALLQNKTFEWNLLSHPNR 118

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           L++ TI +FC+++ +Q PL+A ++  +   D  +   L   A    L    LD       
Sbjct: 119 LRILTIDSFCQSLTRQMPLQAGLSEQWTPTDNPEW--LYRLAIHEFLNP--LDEKVTWFS 174

Query: 191 AFYEIL-EISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           A  ++L  + ND + +E L+  +++ R          S    RK +E+SLW +
Sbjct: 175 ALNQLLIHLDNDFQRLENLLVPLLARREQWLDYLLLQSPDDLRKTLEQSLWDL 227


>gi|284124401|ref|ZP_06386963.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3]
 gi|283829217|gb|EFC33632.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3]
          Length = 1180

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 27/163 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R L +L   +  P  ++ +T T+ AAAEM  RV+E +    +++D
Sbjct: 19  VTAGAGSGKTTVLVERYLEILRKGDVGPQNIVAITFTEKAAAEMKERVIERLNEAGNITD 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                        +L+      + TIHAFC  I+++FP  A + 
Sbjct: 79  R--------------------------DNLLDQMSSAYISTIHAFCSRILREFPFLAKVP 112

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++F+I      K L++E  K TL +I  +  +E +     +L+
Sbjct: 113 ANFSILQGIDQKLLLQETLKETLNNIATNAEDEHRPELTHLLQ 155


>gi|113868365|ref|YP_726854.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia
           eutropha H16]
 gi|113527141|emb|CAJ93486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia
           eutropha H16]
          Length = 1200

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R++RLLLA A P  +L +T T+ AA EM  R+LE++
Sbjct: 28  ACDPARSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRDRLLEVL 87

Query: 87  TAWSHLSDE-ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              S  SDE +++A + +       +  + +AR L   +L  PG + + T H +   +++
Sbjct: 88  AQMSRDSDEDVVAALVQRGLTHDAAREALPRARRLHAQVLAAPGRMAIDTFHGWFGTLLR 147

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + I    A+   E + ++  EA      ++  +   +L+ A+  +++   D    
Sbjct: 148 GAPLASGIVPGAAL--REDALRMKREAWAPVWRALATEQYTDLRAAWETLVDTVGDFQAR 205

Query: 206 TLISDIISNRT 216
            L+  +   R+
Sbjct: 206 ALLDAMFHARS 216


>gi|260220997|emb|CBA29121.1| hypothetical protein Csp_A10560 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1131

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 3/126 (2%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AG+GKT +LV R++R LL  A P  +L +T TK AA EM  R+ + 
Sbjct: 34  IACDPRRSVAVEACAGAGKTWMLVSRMVRALLDGAAPHEILAITFTKKAAGEMRERLYDW 93

Query: 86  ITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           + +++   D  L  E+    +QG  P    ++K R L   +L     ++V+T H++  A+
Sbjct: 94  LRSYARADDSTLRRELQLRGVQG-DPGAEQLAKLRSLHEALLLAGRPVQVRTFHSWFAAL 152

Query: 144 MQQFPL 149
           ++  PL
Sbjct: 153 LRSAPL 158


>gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300072981|gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1158

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 7/211 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           +++ + E +D    T++    A DP  S  V A AGSGKT +LV R+LRLLLA A    L
Sbjct: 10  AYEVNGEAVDAAVFTRA----ACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPEL 65

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITI 124
           L +T T+ AA EM  R+LE++   +   +   +A + +    +P+    +  AR L   I
Sbjct: 66  LAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERI 125

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           L +   L + T H++   ++Q  PL + +   + +   E++ +L++EA +  + ++    
Sbjct: 126 LSSEQSLSIDTFHSWFARLLQIAPLASGVPYGYTLT--EKNGELLDEAYRRFMQTLREPE 183

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNR 215
              +K A  E+ E++ D +   L+   I  R
Sbjct: 184 GAHIKAALLELYELAGDFNARQLLDAFIDKR 214


>gi|117924280|ref|YP_864897.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp.
           MC-1]
 gi|117608036|gb|ABK43491.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp.
           MC-1]
          Length = 1155

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 13/220 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP  S  V A AGSGKT +L QR LRLL     P  +L +T T+ AAAEM  R++E  
Sbjct: 12  ALDPEGSFIVQAPAGSGKTGLLTQRFLRLLAVVDKPEQILAITFTRKAAAEMRGRIVE-- 69

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A +  +  ++  E  + Q  +  +  +++       +L  P  L V TI A    + +Q
Sbjct: 70  -ALAEAARGVVPVEPFERQRYELARGALAQDHAHGWQLLHNPQRLAVMTIDALSSRLTRQ 128

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED-- 203
            P+ +     F  ADE +   L ++A +S L + M +  +  + +A + +L+   D D  
Sbjct: 129 MPVLSGFGGSFERADEPEP--LYQQAARSCLETSMQEPADSPRHQAVWRLLQ-HRDYDFQ 185

Query: 204 -IETLISDIISNRTALKLIFFFFSYL-WRRKIIEKSLWSI 241
            +E L+ ++++ R   + I+   +    +R+++E++LW +
Sbjct: 186 RLEQLLVEMLARRD--QWIYHLQNQDGLQREVLEQALWHL 223


>gi|227878665|ref|ZP_03996580.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus
           JV-V01]
 gi|256843261|ref|ZP_05548749.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN]
 gi|256850382|ref|ZP_05555810.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus
           MV-1A-US]
 gi|262046470|ref|ZP_06019432.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US]
 gi|312978152|ref|ZP_07789896.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05]
 gi|227861729|gb|EEJ69333.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus
           JV-V01]
 gi|256614681|gb|EEU19882.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN]
 gi|256712779|gb|EEU27772.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus
           MV-1A-US]
 gi|260573341|gb|EEX29899.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US]
 gi|310894870|gb|EFQ43940.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05]
          Length = 1202

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 21/184 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +Q    D      VSA+AGSGKT +LV+RVLR +L+      LL +T TKAAA EM 
Sbjct: 5   TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+            + LSAE+      KP  +     R  L   L       + TI AF
Sbjct: 65  TRI-----------KQALSAELA-----KPGSN-----RRYLREQLNQVDTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ +F    N+   F+I  ++    L++E     +    L+  +   + FY+     
Sbjct: 104 CLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYDNFAGD 163

Query: 200 NDED 203
            D D
Sbjct: 164 RDAD 167


>gi|254497523|ref|ZP_05110315.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           drancourtii LLAP12]
 gi|254353240|gb|EET11983.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           drancourtii LLAP12]
          Length = 1084

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 73/150 (48%), Gaps = 19/150 (12%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+DPT+S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA+EM  R   II
Sbjct: 11  ATDPTQSFIVQAPAGSGKTEILTQRYLRLLGRVTAPEQIIALTFTRKAASEMRER---II 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKS-DMSKARHLL-------ITILETPGGLKVQTIHA 138
            A        L      +  K P++   +  AR  L         +L  P  LK+ TI A
Sbjct: 68  MA--------LQQAANNVHAKSPHQQMTLDFAREALHRDAQYHWDLLHQPNRLKIVTIDA 119

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKL 168
            C++I Q  PL     ++  I D+ +S  L
Sbjct: 120 LCQSINQAIPLLEKQIAYSQITDKAESHYL 149


>gi|42519128|ref|NP_965058.1| hypothetical protein LJ1203 [Lactobacillus johnsonii NCC 533]
 gi|81667805|sp|Q74JA6|ADDA_LACJO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|41583415|gb|AAS09024.1| hypothetical protein LJ_1203 [Lactobacillus johnsonii NCC 533]
          Length = 1204

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 24/186 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA EM 
Sbjct: 5   TKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRILSGTPVSSLLIITFTKAAAREMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I      SD+I          K+PN          L + L       + TI +F
Sbjct: 65  ERIKQKI------SDQI---------EKEPN-------NQFLRSQLLDVDTANISTIDSF 102

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++++F    ++   F++  +E   +L++E     +    L+ N++  + FY+    S
Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYD--NFS 160

Query: 200 NDEDIE 205
            D D E
Sbjct: 161 GDRDAE 166


>gi|293380925|ref|ZP_06626959.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1]
 gi|290922500|gb|EFD99468.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1]
          Length = 1202

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 21/184 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +Q    D      VSA+AGSGKT +LV+RVLR +L+      LL +T TKAAA EM 
Sbjct: 5   TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+            + LSAE+      KP  +     R  L   L       + TI AF
Sbjct: 65  TRI-----------KQALSAELA-----KPGSN-----RRYLREQLNQVDTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ +F    N+   F+I  ++    L++E     +    L+  +   + FY+     
Sbjct: 104 CLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYDNFAGD 163

Query: 200 NDED 203
            D D
Sbjct: 164 RDAD 167


>gi|295693034|ref|YP_003601644.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus crispatus
           ST1]
 gi|295031140|emb|CBL50619.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus crispatus
           ST1]
          Length = 1202

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 21/184 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +Q    D      VSA+AGSGKT +LV+RVLR +L+      LL +T TKAAA EM 
Sbjct: 5   TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+            + LSAE+      KP  +     R  L   L       + TI AF
Sbjct: 65  TRI-----------KQALSAELA-----KPGSN-----RRYLREQLNQVDTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ +F    N+   F+I  ++    L++E     +    L+  +   + FY+     
Sbjct: 104 CLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEEKDVNFRHFYDNFAGD 163

Query: 200 NDED 203
            D D
Sbjct: 164 RDAD 167


>gi|300361736|ref|ZP_07057913.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03]
 gi|300354355|gb|EFJ70226.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03]
          Length = 1204

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 26/187 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA EM 
Sbjct: 5   TKEQDQAINDSGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAAREMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I      SD++   E+         + D    R+ L+ I        + TI +F
Sbjct: 65  ERIKQKI------SDQL---EV---------EPDNQFLRNQLLDI----DTANISTIDSF 102

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++++F    ++   F++  DE Q + L E A +   A  + ++N++ +  FY+    
Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQGELLKERALREIEADYLEEDNQDFQD-FYD--NF 159

Query: 199 SNDEDIE 205
           S D D E
Sbjct: 160 SGDRDAE 166


>gi|268319455|ref|YP_003293111.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785]
 gi|262397830|emb|CAX66844.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785]
          Length = 1204

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 24/186 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA EM 
Sbjct: 5   TKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRVLSGTPVSSLLIITFTKAAAREMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I      SD+I          K+PN          L + L       + TI +F
Sbjct: 65  ERIKQKI------SDQI---------EKEPN-------NQFLRSQLLDVDTANISTIDSF 102

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++++F    ++   F++  +E   +L++E     +    L+ N++  + FY+    S
Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYD--NFS 160

Query: 200 NDEDIE 205
            D D E
Sbjct: 161 GDRDAE 166


>gi|298530047|ref|ZP_07017449.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509421|gb|EFI33325.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1142

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 7/155 (4%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +L QR L LL     P  ++ +T T+ AA EM  R+L+  
Sbjct: 14  ALDPKRSFIVQAPAGSGKTELLTQRTLALLCTVQAPEEVVAITFTRKAAGEMRTRILQ-- 71

Query: 87  TAWSHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
            A S  +D E   A   K       +  + ++R L   +  +PG L++QTI + C  ++ 
Sbjct: 72  -ALSRAADGETPGAPHEKTTLDLAARV-LERSRSLGWELESSPGRLRIQTIDSLCSGLVS 129

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           + PL +++     I D      L  +A +STLA +
Sbjct: 130 RMPLLSSLGGQGRINDNPGEMYL--QAARSTLAQL 162


>gi|331005026|ref|ZP_08328431.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989]
 gi|330421154|gb|EGG95415.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989]
          Length = 1260

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 95/211 (45%), Gaps = 20/211 (9%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + E+  A D + S  VSA AGSGKT +L QRVL LL     P  +L +T TK AAAEM  
Sbjct: 15  QPERTRALDTSTSFAVSAPAGSGKTGLLTQRVLALLAQCEEPENVLAITFTKKAAAEMQA 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI-------TILETPGGLKV 133
           R+L+   A  H        E   +      K+    AR +L         +   P  L++
Sbjct: 75  RILD---ALRHAEQHTTEPEEDYL------KTTWRLARAVLARNTEKEWQLFSCPNRLRI 125

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI + C +I QQ P E+ +     I D        + A + TLA +   N+ + +   Y
Sbjct: 126 TTIDSLCRSISQQMPFESKLGHTPEILDN--PNLAYQMAARETLAQLNTQNDLQ-EHLIY 182

Query: 194 EILEISNDED-IETLISDIISNRTALKLIFF 223
            +  + N  D IETL+  ++  R     + F
Sbjct: 183 LVKHVDNKLDTIETLLIQLLGKRDQWLPVLF 213


>gi|325956899|ref|YP_004292311.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus
           acidophilus 30SC]
 gi|325333464|gb|ADZ07372.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus
           acidophilus 30SC]
 gi|327183678|gb|AEA32125.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus
           GRL 1118]
          Length = 1206

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 23/185 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK ++   +D      VSA+AGSGKT +LV+RVLR +LA    S LL +T TKAAA EM 
Sbjct: 5   TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVSELLVVTFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +T                 +  KP  +     R  L   L       + TI AF
Sbjct: 65  TRIKNALTQ----------------EMAKPGVN-----RRYLREQLNQVDTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++ +F    ++   F I  DE Q+  L E A +      + + + + ++ FY+    
Sbjct: 104 CLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREVEGEFLTNKDSDFRR-FYDNFAG 162

Query: 199 SNDED 203
             D D
Sbjct: 163 DRDAD 167


>gi|315038484|ref|YP_004032052.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus
           GRL 1112]
 gi|312276617|gb|ADQ59257.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus
           GRL 1112]
          Length = 1205

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 23/185 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK ++   +D      VSA+AGSGKT +LV+RVLR +LA    S LL +T TKAAA EM 
Sbjct: 5   TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVSELLVVTFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +T                 +  KP  +     R  L   L       + TI AF
Sbjct: 65  TRIKNALTQ----------------EMAKPGVN-----RRYLREQLNQVDTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++ +F    ++   F I  DE Q+  L E A +      + + + + ++ FY+    
Sbjct: 104 CLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREVEGEFLTNKDSDFRR-FYDNFAG 162

Query: 199 SNDED 203
             D D
Sbjct: 163 DRDAD 167


>gi|315924912|ref|ZP_07921129.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621811|gb|EFV01775.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 1178

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 24/181 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +L++R+ RL++       +LL LT T+AAA EM  R+       + LS+
Sbjct: 20  VSAAAGSGKTALLIERIRRLVVDEDVDVDSLLVLTFTRAAAGEMRERLS------TALSE 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            +++             +D  K R L    L    G  ++TIHAFC  ++++F  E +  
Sbjct: 74  ALMAC------------TDADKRRRL-SNQLRRLSGASIETIHAFCGDLVREFFQEVDAD 120

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLISD 210
            +  I D+ +  +L +EA  +      L+  E+ + AF ++++       DED+ TL+ D
Sbjct: 121 PNDRIGDDVELDRLQDEAMTAVFEERYLEIPEDGETAFSKLVDAYGDSKGDEDLRTLVLD 180

Query: 211 I 211
           +
Sbjct: 181 L 181


>gi|258406095|ref|YP_003198837.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798322|gb|ACV69259.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 1132

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP  S  V A AG+GKT +L QR L LL   + P  +L +T T+ AA EM +R   II
Sbjct: 14  ALDPYTSFIVQAPAGAGKTELLTQRYLVLLAGVSAPEEVLAITFTRKAATEMRNR---II 70

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A     D     +  +    +  ++   + + L   + + P  LK+QTI + C  + +Q
Sbjct: 71  AALQRAGDPTPPDKPHEALTWRLARAVREQDQLLGWELEQAPSRLKIQTIDSLCAQLTRQ 130

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDI 204
            P+ ++  +   I D+  +++   EA ++TLA +   +NE   +    +L     N +  
Sbjct: 131 MPVLSSFGAAPGIRDD--AREFYREAARNTLAEL---DNETWSEPLATLLAHLDGNTDQF 185

Query: 205 ETLISDIISNR 215
           E L+ D++  R
Sbjct: 186 EALLVDMLGRR 196


>gi|121535716|ref|ZP_01667519.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans
           Nor1]
 gi|121305681|gb|EAX46620.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans
           Nor1]
          Length = 1246

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 34/197 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LVQR++  +L    P     LL +T T AAAAEM  R+ + +TA    
Sbjct: 21  VAAAAGSGKTSVLVQRIIDRILDKTAPVNVDALLVVTFTNAAAAEMRERIAQALTA---- 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E+   E T+              R LL+          + TIH+FC+++++Q+    +
Sbjct: 77  --ELAKGERTRYL-----------ERQLLLL-----NQASISTIHSFCQSVVRQYFYRLD 118

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +   F IA E ++  L    +  TL +++ +  E+  +AF  +++   DE  ++ ++ +I
Sbjct: 119 LDPQFRIAGEGETTLL----RSDTLEALLAERYEQGDEAFLTLVDHYGDERDDSSLAGLI 174

Query: 213 SNRTALKLIFFFFSYLW 229
                L+L  F  S  W
Sbjct: 175 -----LRLYEFARSQPW 186


>gi|282852209|ref|ZP_06261561.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1]
 gi|282556628|gb|EFB62238.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1]
          Length = 828

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 26/187 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA EM 
Sbjct: 5   TKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAAREMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I      SD++   EI         + D    R  L+ +        + TI +F
Sbjct: 65  ERIKQKI------SDQL---EI---------EPDNQFLRSQLLDV----DTANISTIDSF 102

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++++F    ++   F++  DE Q++ L E A +   A  +  +N++ +  FY+    
Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQD-FYD--NF 159

Query: 199 SNDEDIE 205
           S D D E
Sbjct: 160 SGDRDAE 166


>gi|116749176|ref|YP_845863.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB]
 gi|116698240|gb|ABK17428.1| DNA helicase/exodeoxyribonuclease V, subunit A [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1162

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           DP+ S  + A AGSGKT +L  R LRLL    HP  +L +T T  AA+EM  RV   +  
Sbjct: 22  DPSGSFHLEAPAGSGKTFLLTARFLRLLGLVEHPQQILAMTFTNKAASEMRERVCRYLQR 81

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTIHAFCEAIMQQF 147
                 E   AE     G+  + +  + ARH     L   G  L++QT H+FC A+  Q 
Sbjct: 82  AKR--GERPEAE---PDGELLDAAAKALARHQAHEPLLMGGELLRIQTFHSFCHALAAQA 136

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           PLEA I     +  E +    + E    TL  + L   E+
Sbjct: 137 PLEAGIAPGSTLMAEPEQTFFLREVIDDTLREVALRRPED 176


>gi|330427295|gb|AEC18629.1| putative nuclease/helicase [Pusillimonas sp. T7-7]
          Length = 1119

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 8/159 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +PTRS  + A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  RVL  +
Sbjct: 15  AINPTRSFLIQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVLAKL 74

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A      E    E  K++G +  ++ + + + L   +L+ P  + ++TI +FC  +++ 
Sbjct: 75  KAGQGPQPE----EPYKLRGWQLARAVLQRDQQLGWDLLDYPARMSIRTIDSFCTWLVRA 130

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            P  +++    +I D   +++  E A ++TL+  M D N
Sbjct: 131 MPWLSSLGGVPSITD--NAREHYEAAAQATLS--MADEN 165


>gi|116629672|ref|YP_814844.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|238854242|ref|ZP_04644586.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4]
 gi|122273390|sp|Q043G6|ADDA_LACGA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116095254|gb|ABJ60406.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|238833053|gb|EEQ25346.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4]
          Length = 1204

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 26/187 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA EM 
Sbjct: 5   TKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAAREMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I      SD++   EI         + D    R  L+ +        + TI +F
Sbjct: 65  ERIKQKI------SDQL---EI---------EPDNQFLRSQLLDV----DTANISTIDSF 102

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++++F    ++   F++  DE Q++ L E A +   A  +  +N++ +  FY+    
Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQD-FYD--NF 159

Query: 199 SNDEDIE 205
           S D D E
Sbjct: 160 SGDRDAE 166


>gi|311110685|ref|ZP_07712082.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22]
 gi|311065839|gb|EFQ46179.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22]
          Length = 1204

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 26/187 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA EM 
Sbjct: 5   TKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAAREMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I      SD++   EI         + D    R  L+ +        + TI +F
Sbjct: 65  ERIKQKI------SDQL---EI---------EPDNQFLRSQLLDV----DTANISTIDSF 102

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++++F    ++   F++  DE Q++ L E A +   A  +  +N++ +  FY+    
Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQD-FYD--NF 159

Query: 199 SNDEDIE 205
           S D D E
Sbjct: 160 SGDRDAE 166


>gi|295424857|ref|ZP_06817572.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM
           11664]
 gi|295065423|gb|EFG56316.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM
           11664]
          Length = 1199

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 25/187 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +Q    D  +   VSA+AGSGKT +LVQRVL  +L+      LL +T TKAAA EM 
Sbjct: 4   TKEQQQAIDDRGKDILVSASAGSGKTTVLVQRVLDEILSGTDVDQLLIVTFTKAAAEEMK 63

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +T        + S+   +   ++ NK D +                 + TI AF
Sbjct: 64  ERIKNALTQ------ALQSSNQKRYLRRQLNKIDTA----------------NISTIDAF 101

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++ +F    N+   F+I  DE Q+  L E A K   +S +   + +    FY     
Sbjct: 102 CLEVIHRFYYVINLDPSFSILTDETQAALLRERALKDIESSFLTAEDNQDFIDFYN--NF 159

Query: 199 SNDEDIE 205
           + D D+E
Sbjct: 160 AGDRDVE 166


>gi|194290034|ref|YP_002005941.1| helicase, uvrd subfamily [Cupriavidus taiwanensis LMG 19424]
 gi|193223869|emb|CAQ69878.1| Putative helicase, uvrD subfamily [Cupriavidus taiwanensis LMG
           19424]
          Length = 1213

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R++RLLLA A P  +L +T T+ AA EM  R+LE++
Sbjct: 28  ACDPARSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRDRLLEVL 87

Query: 87  TAWSHLS-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +  S D++++A + +       +  + +AR L   +L  PG + + T H +   +++
Sbjct: 88  AQLARDSDDDVIAALVQRGLCADAAREALPRARRLHAQVLAAPGRMAIDTFHGWFGTLLR 147

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + I    A+   E + ++  EA      ++      EL+ A+  +++   D    
Sbjct: 148 GAPLASGIVPGAAL--REDALRMKREAWAPVWRALATPPYAELRAAWETLVDTVGDFQAR 205

Query: 206 TLISDIISNRT 216
            L+  +   R+
Sbjct: 206 ALLDAMFHARS 216


>gi|227904086|ref|ZP_04021891.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC
           4796]
 gi|227868105|gb|EEJ75526.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC
           4796]
          Length = 1207

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 23/176 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +Q    D      VSA+AGSGKT +LV+RVL+ +++    S LL +T TKAAA EM 
Sbjct: 5   TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLKEIISGTQVSELLVVTFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R   I TA        L+ E+      KP  +     R  L   L       + TI AF
Sbjct: 65  TR---IKTA--------LTKELA-----KPGVN-----RKYLREQLNQVDTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           C  ++++F    N+   F I  DE Q+  + E A +   A  + D N  + + FY+
Sbjct: 104 CLEVIRRFYYSVNLNPSFKILTDETQAALIKERALREIEAESLTDENSGI-RYFYD 158


>gi|58337450|ref|YP_194035.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus
           NCFM]
 gi|75357583|sp|Q5FJX0|ADDA_LACAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|58254767|gb|AAV43004.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus
           NCFM]
          Length = 1207

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 23/176 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +Q    D      VSA+AGSGKT +LV+RVL+ +++    S LL +T TKAAA EM 
Sbjct: 5   TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLKEIISGTQVSELLVVTFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R   I TA        L+ E+      KP  +     R  L   L       + TI AF
Sbjct: 65  TR---IKTA--------LTKELA-----KPGVN-----RKYLREQLNQVDTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           C  ++++F    N+   F I  DE Q+  + E A +   A  + D N  + + FY+
Sbjct: 104 CLEVIRRFYYSVNLNPSFKILTDETQAALIKERALREIEAESLTDENSGI-RYFYD 158


>gi|291542614|emb|CBL15724.1| recombination helicase AddA, Firmicutes type [Ruminococcus bromii
           L2-63]
          Length = 1186

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 29/169 (17%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89
           S  VSA AGSGKT +LV+RV++L+    +P     LL +T T+AAAAEM  R+       
Sbjct: 19  SVLVSAAAGSGKTAVLVERVIKLITREKNPLDVDRLLIVTFTRAAAAEMRERI------- 71

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                    A + K+    P  + +   R LL +         + TI +FC  I++++  
Sbjct: 72  --------QAAVNKLLEDDPYNAHLLAQRQLLYSA-------NISTIDSFCGDIVREYFH 116

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
             ++   F IADE + + L +EA  +T  S   D+ ++    FY +L++
Sbjct: 117 TLDVARDFRIADEGELEILRQEALDNTFES-FYDSEDD---CFYSLLDL 161


>gi|256821959|ref|YP_003145922.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
 gi|256795498|gb|ACV26154.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
          Length = 1138

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 28/165 (16%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A D TRS  V A AGSGKT +L QRVL+LL    +P  ++ +T T  AA EM +R+++  
Sbjct: 11  AIDHTRSFIVQAPAGSGKTELLTQRVLKLLAVVQNPEEVVAITFTNKAAREMQNRIMQ-- 68

Query: 87  TAWSHLSDEILSAEITKIQGKKPN-----------KSDMSKARHLLITILETPGGLKVQT 135
                         +   QG KP+           KS + + + L   ++ +P  L+++T
Sbjct: 69  -------------SLYSAQGPKPDQPHKVLTWELAKSVLQRDQELDWGLMHSPHRLRIKT 115

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
             + C  I  Q P+ A       ++  E   +L  +A KS +  +
Sbjct: 116 FDSLCATIANQMPVLAKFGGQ--LSPTENPYELYYQAAKSVVDGV 158


>gi|241768156|ref|ZP_04765619.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241360465|gb|EER57577.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 208

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 3/126 (2%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AG+GKT +LV R+LR LL  A P  +L +T TK AA EM  R+ E 
Sbjct: 22  IACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGAAPHEILAITFTKKAAGEMRQRLQEW 81

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNK-SDMSKA-RHLLITILETPGGLKVQTIHAFCEAI 143
           +  ++H   + L+ E+   +G  P + SD  +A ++L   +L +   ++++T H++  A+
Sbjct: 82  LEVFAHAPLDDLARELIA-RGISPERSSDKREALQNLYRKMLASGRPVQIRTFHSWFAAL 140

Query: 144 MQQFPL 149
           +   PL
Sbjct: 141 LGTAPL 146


>gi|54294699|ref|YP_127114.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens]
 gi|53754531|emb|CAH16015.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens]
          Length = 1076

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 7/125 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+DP  S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA+EM  R+++ +
Sbjct: 12  ATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRERIVQAL 71

Query: 87  TAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
               H++     A ++  Q    N  K  + + +     +LE P  LK+ TI + C++I 
Sbjct: 72  ----HMAASNQPA-VSAHQQSTLNFAKQALQRNKQYQWDLLEQPNRLKIITIDSLCQSIN 126

Query: 145 QQFPL 149
           +  PL
Sbjct: 127 RAIPL 131


>gi|299535964|ref|ZP_07049283.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728569|gb|EFI69125.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1]
          Length = 1239

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 29/183 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +L+ R++  ++A  +P     LL +T T A+AAEM HR           
Sbjct: 31  VSAAAGSGKTAVLINRMIEKVIATENPINVDELLVVTFTNASAAEMRHR----------- 79

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               +S  + K   + P  + + +   L+          ++ T+H+FC AI++QF    +
Sbjct: 80  ----MSEALEKAIAENPTSNHLRRQLSLV-------NKAQISTLHSFCLAIVKQFAYLLD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208
           I   F IA+E +   L ++     L       +E+  +A Y +++      +D+ IETLI
Sbjct: 129 IDPGFRIANEAEIALLRDDVLAEVLEDAYDSEDEDHVQAIYRLVDSFTSDRDDQAIETLI 188

Query: 209 SDI 211
           S +
Sbjct: 189 SKL 191


>gi|54297724|ref|YP_124093.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris]
 gi|53751509|emb|CAH12927.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris]
          Length = 1076

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 7/125 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+DP  S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA+EM  R+++ +
Sbjct: 12  ATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRERIVQAL 71

Query: 87  TAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
               H++     A ++  Q    N  K  + + +     +LE P  LK+ TI + C++I 
Sbjct: 72  ----HMAASNQPA-VSAHQQSTLNFAKQALQRNKQYQWDLLEQPNRLKIITIDSLCQSIN 126

Query: 145 QQFPL 149
           +  PL
Sbjct: 127 RAIPL 131


>gi|88703287|ref|ZP_01101003.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71]
 gi|88702001|gb|EAQ99104.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71]
          Length = 1107

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 20/200 (10%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +L A DP  S  VSA AGSGKT +LVQR L LL   + P +++ +T T+ AAAEM  RV+
Sbjct: 9   RLRAVDPGLSVCVSAPAGSGKTALLVQRFLGLLARVSEPESVVAITFTRKAAAEMRARVV 68

Query: 84  EIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +  A   +       E      +   + D S+   L    L+ P  L++QTI +FC  
Sbjct: 69  GALQGAAEGVKARNPHEEALMAAARAVAEHDGSRGWGL----LDNPSRLRIQTIDSFCGY 124

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           + +Q P+ +         D+  S+ L  EA ++ L   +  N  +  KA           
Sbjct: 125 LTRQMPVLSGCGGQVTATDD--SRVLYREAIENFLHGEL--NRRQDDKA----------R 170

Query: 203 DIETLISDIISN-RTALKLI 221
           DIETL+  + +N  +AL+L+
Sbjct: 171 DIETLLLHLDNNWDSALELL 190


>gi|154148488|ref|YP_001406940.1| ATP-dependent DNA helicase UvrD [Campylobacter hominis ATCC
           BAA-381]
 gi|153804497|gb|ABS51504.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter hominis
           ATCC BAA-381]
          Length = 923

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           ++  R   + A+AGSGKTH L +R + L+L  A P+ +L +T TK AA+EM  R++E   
Sbjct: 5   NENNRYEALQASAGSGKTHALTKRFVELMLDGALPNQILAITFTKKAASEMKSRIVE--- 61

Query: 88  AWSHLSDEILSAEITKIQGKKP----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           A+  L +  +  ++    G+      N+ D  K + L          LK+ T  AF  +I
Sbjct: 62  AFLDLENSKILHDVMNDFGESKEQILNRRDKLKEKFL-------NQNLKIYTFDAFFSSI 114

Query: 144 MQQFPLEANITSHFAIAD 161
           ++ F L   ++S+F++ D
Sbjct: 115 LRAFALNLGLSSNFSVDD 132


>gi|227890027|ref|ZP_04007832.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849471|gb|EEJ59557.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           johnsonii ATCC 33200]
          Length = 1204

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 24/186 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA EM 
Sbjct: 5   TKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRILSGTPVSSLLIITFTKAAAREMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I      SD+I              +S+    R  L+ +        + TI +F
Sbjct: 65  ERIKQKI------SDQI------------EKESNNQFLRSQLLDV----DTANISTIDSF 102

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++++F    ++   F++  +E   +L++E     +    L+ N++  + FY+    S
Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYD--NFS 160

Query: 200 NDEDIE 205
            D D E
Sbjct: 161 GDRDAE 166


>gi|33592640|ref|NP_880284.1| putative nuclease/helicase [Bordetella pertussis Tohama I]
 gi|33572286|emb|CAE41838.1| putative nuclease/helicase [Bordetella pertussis Tohama I]
          Length = 1134

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 24/160 (15%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP+RS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  RVL  +
Sbjct: 17  ALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHARVLHKL 76

Query: 87  ---------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                    +A    S E+  A + +         D  +  HL    L+ P  L ++TI 
Sbjct: 77  SLGAGEPPRSAHERRSWELARAALAR---------DQEQGWHL----LDHPARLAIRTID 123

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +FC  +++  P  + +     IAD+ ++    E A ++TL
Sbjct: 124 SFCAGLVRGMPWLSELGGMPDIADDARAH--YEAAARATL 161


>gi|52842039|ref|YP_095838.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148359358|ref|YP_001250565.1| ATP-dependent DNA helicase [Legionella pneumophila str. Corby]
 gi|296107405|ref|YP_003619105.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila 2300/99 Alcoy]
 gi|52629150|gb|AAU27891.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148281131|gb|ABQ55219.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila str. Corby]
 gi|295649306|gb|ADG25153.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610513|emb|CBX00098.1| hypothetical protein LPW_18431 [Legionella pneumophila 130b]
          Length = 1076

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 7/125 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+DP  S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA+EM  R+++ +
Sbjct: 12  ATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRERIVQAL 71

Query: 87  TAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
               H++     A ++  Q    N  K  + +       +LE P  LK+ TI + C++I 
Sbjct: 72  ----HMAASNQPA-VSAHQQSTLNFAKQALQRNNQYQWDLLEQPNRLKIITIDSLCQSIN 126

Query: 145 QQFPL 149
           +  PL
Sbjct: 127 RAIPL 131


>gi|33595892|ref|NP_883535.1| putative nuclease/helicase [Bordetella parapertussis 12822]
 gi|33565971|emb|CAE36522.1| putative nuclease/helicase [Bordetella parapertussis]
          Length = 1134

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 24/160 (15%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP+RS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  RVL  +
Sbjct: 17  ALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHARVLHKL 76

Query: 87  ---------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                    +A    S E+  A + +         D  +  HL    L+ P  L ++TI 
Sbjct: 77  SLGAGEPPRSAHERRSWELARAALAR---------DQEQGWHL----LDHPARLAIRTID 123

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +FC  +++  P  + +     IAD+ ++    E A ++TL
Sbjct: 124 SFCAGLVRGMPWLSELGGMPDIADDARAH--YEAAARATL 161


>gi|33600423|ref|NP_887983.1| putative nuclease/helicase [Bordetella bronchiseptica RB50]
 gi|33568022|emb|CAE31935.1| putative nuclease/helicase [Bordetella bronchiseptica RB50]
          Length = 1134

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 24/160 (15%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP+RS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  RVL  +
Sbjct: 17  ALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHARVLHKL 76

Query: 87  ---------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                    +A    S E+  A + +         D  +  HL    L+ P  L ++TI 
Sbjct: 77  SLGAGEPPRSAHERRSWELARAALAR---------DQEQGWHL----LDHPARLAIRTID 123

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +FC  +++  P  + +     IAD+ ++    E A ++TL
Sbjct: 124 SFCAGLVRGMPWLSELGGMPDIADDARAH--YEAAARATL 161


>gi|82701856|ref|YP_411422.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196]
 gi|82409921|gb|ABB74030.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosospira
           multiformis ATCC 25196]
          Length = 1196

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 15/204 (7%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           ++E+  A DP  S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  
Sbjct: 18  EAERRQALDPACSFIVQAPAGSGKTGLLIQRYLKLLACVEEPEEVVAITFTRKAAAEMRQ 77

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL-------ITILETPGGLKV 133
           R++  + +    +    + E    Q  K  K+  + A  +L         + + P  L++
Sbjct: 78  RLVAALASAQKAAHSSGAQEAE--QESKHEKTTRTLAHAVLRRDAEACWRLADHPARLRI 135

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           QT  + C ++ +Q P+ +         D+  +  L  EA ++TLA  +LD ++ + +   
Sbjct: 136 QTFDSLCASLTRQMPVLSGFGGQPETVDD--ASDLYLEAARATLA--LLDGDDAVAEDVE 191

Query: 194 EILE-ISND-EDIETLISDIISNR 215
            +LE + ND   IE L+ +I++ R
Sbjct: 192 CLLEHLDNDIGRIEKLLVEILALR 215


>gi|300114627|ref|YP_003761202.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
 gi|299540564|gb|ADJ28881.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
          Length = 1147

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 33/203 (16%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P  S  V A AGSGKT +L QR L LL     P  ++ +T T+ AAAEM +R++E +
Sbjct: 15  ALNPHGSFIVQAPAGSGKTELLTQRYLMLLARVEAPEEIVAITFTRKAAAEMRYRIIEAL 74

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI------------TILETPGGLKVQ 134
            +               ++  +P K++ +K    L             ++ + P  L++Q
Sbjct: 75  AS---------------VKESQPPKAEPAKTTWELACAVRRRDEGMGWSLEDHPARLRIQ 119

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TI + C ++ +Q PL +   +   I ++ +S  L  +A + TLA +  ++  E   +   
Sbjct: 120 TIDSLCASLTRQMPLLSRFGAQPGITEDAES--LYRQAARRTLAEV--ESGAEWSASVET 175

Query: 195 ILEISNDE--DIETLISDIISNR 215
           +L   N+    IE L+S +++ R
Sbjct: 176 LLRHLNNNWGKIERLLSAMLARR 198


>gi|332039917|gb|EGI76310.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624]
          Length = 1133

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 8/131 (6%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLTHTKAAAAEMSH 80
           +A DP R   V A AG+GKT +LV R+LR LL       A    +L +T TK AA EM  
Sbjct: 22  IACDPRRHVAVEACAGAGKTWMLVSRILRALLGEQGDDGAQAHEILAITFTKKAAGEMRQ 81

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHA 138
           R+ E ++A++   D+ L AE+ + +G +  + D  ++  R L + +L+    ++++T H+
Sbjct: 82  RLTEWLSAFACYDDDQLRAEL-RARGVEQARVDVLIAPLRGLHLRLLQQGRAVQIRTFHS 140

Query: 139 FCEAIMQQFPL 149
           +  A+++  PL
Sbjct: 141 WFAALLRNAPL 151


>gi|325982040|ref|YP_004294442.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
 gi|325531559|gb|ADZ26280.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
          Length = 1158

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 35/204 (17%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP++S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  RVL   
Sbjct: 16  ALDPSQSFIVQAPAGSGKTTLLIQRYLKLLTCVDTPEEVVAITFTRKAAAEMRTRVLA-- 73

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-----------ETPGGLKVQT 135
                        EI +I G+     +    R L + +L           E P  L++QT
Sbjct: 74  -----------ELEIARIPGEAETAYEKLN-RELAVAVLLRDQQAGWYLSEHPERLRIQT 121

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADE--EQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           I + C ++ +Q P+     S F    E  E +     EA + TL   ++  +  +     
Sbjct: 122 IDSLCASLTRQMPM----LSKFGAQPETTEDATDFYLEAVRVTLE--LMQQDHAIAHDIE 175

Query: 194 EILE-ISND-EDIETLISDIISNR 215
           ++LE + ND   +ETL+ ++++ R
Sbjct: 176 QLLEHLDNDMARVETLLIEMLAQR 199


>gi|218533282|ref|YP_002424097.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
 gi|218525585|gb|ACK86169.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
          Length = 1117

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 9/147 (6%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           RS  V A AGSGKT ++  RV  +L +   P ++  +T T+ AA+E+  RV E+      
Sbjct: 23  RSLLVEAGAGSGKTALMAGRVAMMLASGTAPGSIAAVTFTELAASELLERVGEV------ 76

Query: 92  LSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            +  ++  ++  +++   PN   +S+ R LL+   E    +   TIH FC+ +++ +P+E
Sbjct: 77  -TGRLIEGQVPEEMRIALPNGLSVSQ-RQLLVEAAEHLDEMACTTIHGFCQRLVKPYPVE 134

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTL 177
           A+I     + DE ++  + ++ +   L
Sbjct: 135 ADIDPGARVVDEAEADGIFQDLRDGWL 161


>gi|225375922|ref|ZP_03753143.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM
           16841]
 gi|225212243|gb|EEG94597.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM
           16841]
          Length = 1182

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 38/221 (17%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +S T  +Q +     R+  VSA AGSGKT +LV+R+++++    HP     LL +T T A
Sbjct: 3   VSWTTEQQQVIDLRNRNILVSAAAGSGKTAVLVERIVKIITDKNHPVDIDHLLIVTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGL 131
           AAAEM  R+                  I K   ++P         HLL  +T++      
Sbjct: 63  AAAEMRERI---------------GNAIEKALDEQPGNE------HLLRQLTLIHNA--- 98

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           ++ TI +FC  +++    E ++  +F I DE + K L    ++  L  ++  N EE  +A
Sbjct: 99  QITTIDSFCLYVVRNHFHEIDLEPNFRIGDEGELKLL----REDVLGRVLEQNYEEPSEA 154

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232
           F + +     E   +  +D   N   L+L  F  SY W  K
Sbjct: 155 FSDFV-----EGYASGRTDAALNEMILQLYEFSRSYPWPEK 190


>gi|121605093|ref|YP_982422.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120594062|gb|ABM37501.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polaromonas
           naphthalenivorans CJ2]
          Length = 1103

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 21/144 (14%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANA------------HPSTLLCLTHT 71
           +A DP RS  + A AG+GKT +LV R++R LL  ANA             P  +L +T T
Sbjct: 20  IACDPRRSVAIEACAGAGKTWMLVSRIVRALLDGANAPDPASGTPREPVRPHEILAITFT 79

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA------RHLLITIL 125
           K AA EM  R+ E +  ++H  DE L  E+  ++G    KS  S A       +L  ++L
Sbjct: 80  KKAAGEMRERLDEWLQKFTHADDETLRQELI-MRGVSSQKSLQSNADMRRQLSNLYRSML 138

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPL 149
            +   ++++T H++  A+++  P+
Sbjct: 139 ASGRAVQIRTFHSWFAALLRSAPV 162


>gi|240139167|ref|YP_002963642.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
 gi|240009139|gb|ACS40365.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
          Length = 1124

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 11/148 (7%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           RS  V A AGSGKT ++  R+  +L A   P ++  +T T+ AA+E+  RV E++     
Sbjct: 23  RSLLVEAGAGSGKTALMAGRIAMMLAAGVAPGSIAAVTFTELAASELLERVGEVV---GR 79

Query: 92  LSDEILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           L +  +  E+  +   G  P++      R  L+   E    L   TIH FC+ +++ +P+
Sbjct: 80  LVEGQVPEELRVVLPNGLSPDQ------RARLVEAGEHLDALACTTIHGFCQRLVKPYPV 133

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTL 177
           EA+I     +ADE ++  + ++ +   L
Sbjct: 134 EADIDPGARVADEAEADGIFQDLRDGWL 161


>gi|157691776|ref|YP_001486238.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus
           SAFR-032]
 gi|251764506|sp|A8FBR1|ADDA_BACP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|157680534|gb|ABV61678.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus
           SAFR-032]
          Length = 1234

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 29/165 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R +    HP     LL +T T A+AAEM HR+ E        
Sbjct: 28  VAAAAGSGKTAVLVERLIRKMTRPEHPVDVDRLLVVTFTNASAAEMKHRITEA------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + K   K P    M +   L+           + T+H+FC  +++ F  E +
Sbjct: 81  --------LEKELAKNPGSLHMRRQLSLM-------NRANISTLHSFCLQVLRTFYYEID 125

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +   F +AD+ + + L +E     L  +  D  +  K +F+E+++
Sbjct: 126 LDPGFRLADQTEGELLGDE----VLDELFEDEYKAGKPSFFELVD 166


>gi|194014992|ref|ZP_03053609.1| recombination helicase AddA [Bacillus pumilus ATCC 7061]
 gi|194014018|gb|EDW23583.1| recombination helicase AddA [Bacillus pumilus ATCC 7061]
          Length = 1232

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 29/165 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R +    HP     LL +T T A+AAEM HR+ E        
Sbjct: 28  VAAAAGSGKTAVLVERLIRKMTRPEHPVDVDRLLVVTFTNASAAEMKHRITEA------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + K   K P    M +   L+           + T+H+FC  +++ F  E +
Sbjct: 81  --------LEKELAKNPGSLHMRRQLSLM-------NRANISTLHSFCLQVLRTFYYEID 125

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +   F +AD+ + + L +E     L  +  D  +  K +F+E+++
Sbjct: 126 LDPGFRLADQTEGELLGDE----VLDELFEDEYKAGKPSFFELVD 166


>gi|73541802|ref|YP_296322.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha
           JMP134]
 gi|72119215|gb|AAZ61478.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha
           JMP134]
          Length = 1197

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 3/191 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP  S  V A AGSGKT +LV R++RLLLA A P  +L +T T+ AA EM  R+LE++
Sbjct: 22  ACDPASSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRERLLEVL 81

Query: 87  TAWSHLSDE-ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +  SDE ++ A + +    +     + +AR L   +L  PG + + T H +   +++
Sbjct: 82  AQLARDSDEAVVEALVMRGMTAQAAHESLPRARRLHAQVLAAPGRMAIDTFHGWFGTLLR 141

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + +    ++   E + ++  EA      ++      EL++A+  +++   +    
Sbjct: 142 GAPLASGVVPGASL--REDALRMKREAWAPVWRALATPKYAELRQAYEALVDAVGEFQAR 199

Query: 206 TLISDIISNRT 216
            L+  +   R+
Sbjct: 200 GLLDAMFHARS 210


>gi|125974531|ref|YP_001038441.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium
           thermocellum ATCC 27405]
 gi|251764521|sp|A3DH19|ADDA_CLOTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|125714756|gb|ABN53248.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium
           thermocellum ATCC 27405]
          Length = 1251

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 34/208 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           +S  VSA AG+GKT +LV+R++R +    +P     LL +T T AAA EM  R+ + I+ 
Sbjct: 20  KSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAATEMRERIAQAISE 79

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                         K++ + P  +++ +   LL       G   + TIH+FC  +++   
Sbjct: 80  --------------KLE-ENPGSANIQRQLTLL-------GKACITTIHSFCLEVIRSNF 117

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            + NI   F IADE +S+ +  EA          + NE+    F+E+LE       +  +
Sbjct: 118 QQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFELLECYGGNRDDRAL 173

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEK 236
            D++     L L  F  S  W  + +EK
Sbjct: 174 QDMV-----LNLYDFIQSSPWPEEWLEK 196


>gi|256005816|ref|ZP_05430767.1| recombination helicase AddA [Clostridium thermocellum DSM 2360]
 gi|255990217|gb|EEU00348.1| recombination helicase AddA [Clostridium thermocellum DSM 2360]
 gi|316941647|gb|ADU75681.1| recombination helicase AddA [Clostridium thermocellum DSM 1313]
          Length = 1251

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 34/208 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           +S  VSA AG+GKT +LV+R++R +    +P     LL +T T AAA EM  R+ + I+ 
Sbjct: 20  KSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAATEMRERIAQAISE 79

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                         K++ + P  +++ +   LL       G   + TIH+FC  +++   
Sbjct: 80  --------------KLE-ENPGSANIQRQLTLL-------GKACITTIHSFCLEVIRSNF 117

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            + NI   F IADE +S+ +  EA          + NE+    F+E+LE       +  +
Sbjct: 118 QQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFELLECYGGNRDDRAL 173

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEK 236
            D++     L L  F  S  W  + +EK
Sbjct: 174 QDMV-----LNLYDFIQSSPWPEEWLEK 196


>gi|281419055|ref|ZP_06250072.1| recombination helicase AddA [Clostridium thermocellum JW20]
 gi|281407204|gb|EFB37465.1| recombination helicase AddA [Clostridium thermocellum JW20]
          Length = 1251

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 34/208 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           +S  VSA AG+GKT +LV+R++R +    +P     LL +T T AAA EM  R+ + I+ 
Sbjct: 20  KSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAATEMRERIAQAISE 79

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                         K++ + P  +++ +   LL       G   + TIH+FC  +++   
Sbjct: 80  --------------KLE-ENPGSANIQRQLTLL-------GKACITTIHSFCLEVIRSNF 117

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            + NI   F IADE +S+ +  EA          + NE+    F+E+LE       +  +
Sbjct: 118 QQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFELLECYGGNRDDRAL 173

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEK 236
            D++     L L  F  S  W  + +EK
Sbjct: 174 QDMV-----LNLYDFIQSSPWPEEWLEK 196


>gi|169826779|ref|YP_001696937.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41]
 gi|251764534|sp|B1HN90|ADDA_LYSSC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|168991267|gb|ACA38807.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41]
          Length = 1238

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 29/181 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +L+ R++  ++A  +P     LL +T T A+AAEM HR           
Sbjct: 31  VSAAAGSGKTAVLINRMIEKVIATDNPINVDELLVVTFTNASAAEMRHR----------- 79

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               +S  + K   + P  S + +   L+          ++ T+H+FC AI++Q+    +
Sbjct: 80  ----MSEALEKAIVENPTSSHLRRQLSLI-------NKAQISTLHSFCLAIVKQYAYLLD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208
           I   F IA+E +   L ++     L        E   +A Y +++      +D+ IETLI
Sbjct: 129 IDPGFRIANEAEVALLRDDIVADVLEGAYDSEEETQVQAIYRLVDSFTSDRDDQAIETLI 188

Query: 209 S 209
           S
Sbjct: 189 S 189


>gi|88608144|ref|YP_506352.1| ATP-dependent DNA helicase UvrD [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600313|gb|ABD45781.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia sennetsu
           str. Miyayama]
          Length = 907

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 15/118 (12%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            +DP  S W++++AG GKT +LV+R + LL+       +LC+T TK A AEM +R+  I+
Sbjct: 5   VTDPNVSVWINSSAGCGKTTLLVRRAISLLVNKE--KNILCITFTKVATAEMHNRIFAIL 62

Query: 87  TAWSHLS----DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
              S ++    DE L + I +         D    R L+ T       +++QT+H+FC
Sbjct: 63  GKLSAMNDTDMDEYLLSTINR------TVKDRDYVRKLVYT---ADAFIQIQTLHSFC 111


>gi|307721871|ref|YP_003893011.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
 gi|306979964|gb|ADN09999.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
          Length = 904

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 14/163 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A+AGSGKT +LV R L LL   A PS +L LT T  AA+EMS R++E +     L     
Sbjct: 10  ASAGSGKTFMLVVRYLSLLFKGAEPSKVLALTFTNKAASEMSERIIETL---EDLDSRTE 66

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
            +EI K  G   +   +++   +L   L      K+ TI +F   I+++F L A++   F
Sbjct: 67  LSEIAKECGMDEDDI-LAQRSKILAEFLNAHT--KIMTIDSFFTQILRKFSLYASLMPDF 123

Query: 158 AIADEEQSKKLIEE--------AKKSTLASIMLDNNEELKKAF 192
             A+ +   KL+           K+STL ++ L++++ +   F
Sbjct: 124 TTANAQHEVKLMSRFLKEVSVANKRSTLINLSLESSKRVSDIF 166


>gi|311108181|ref|YP_003981034.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8]
 gi|310762870|gb|ADP18319.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8]
          Length = 1147

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DPTRS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  RVL  +
Sbjct: 17  ALDPTRSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVLSKL 76

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                   E +    +    +     + ++  HL    L+ P  L ++TI +FC  +++ 
Sbjct: 77  RRGLDAPPEAMHERRSWELARAALARNEAQGWHL----LDHPARLAIRTIDSFCAGLVRS 132

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            P  + +     I D+ ++    E A ++TL
Sbjct: 133 MPWLSELGGMPEITDDARAH--YEAAARATL 161


>gi|227892521|ref|ZP_04010326.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           ultunensis DSM 16047]
 gi|227865642|gb|EEJ73063.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           ultunensis DSM 16047]
          Length = 1207

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK ++   +D      VSA+AGSGKT +LV+RVLR +LA    + LL +T TKAAA EM 
Sbjct: 5   TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVNELLVVTFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +T                 +  KP  +     R  L   L       + TI AF
Sbjct: 65  TRIKNALTK----------------ELAKPGAN-----RRYLREQLNQIDTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++ +F    ++   F I  DE Q+  L E A +      +   +   +K FY+    
Sbjct: 104 CLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREIEGERLTAKDSSFRK-FYDNFAG 162

Query: 199 SNDED 203
             D D
Sbjct: 163 DRDAD 167


>gi|225872585|ref|YP_002754040.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792506|gb|ACO32596.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 1201

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 14/212 (6%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLC 67
           SE   L    ++E+  A + TRS  V A AGSGKT +L +R L  LLA  H   P  +L 
Sbjct: 19  SEMRPLHPVDQAERESAIEVTRSVLVQAPAGSGKTDLLTRRFLA-LLAEGHVEGPEQILA 77

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T+AA AEM  R+L+ +   +   ++    E  K+  +   ++           +LE 
Sbjct: 78  ITFTRAATAEMRARILKDLRDVASTDEQPGENERRKLARRALARARERGW-----PLLEQ 132

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P  L+V+TI + C  I    PL A +    +  D+  +  L  EA + T+  +  D N+E
Sbjct: 133 PALLQVETIDSLCMRIAHGQPLLARLGGQLSPVDD--ASALYLEAARRTIRHLGGD-NQE 189

Query: 188 LKKAFYEILEISNDE--DIETLISDIISNRTA 217
           L  A   +L + +    D E L++D++  R  
Sbjct: 190 LSAAIQHLLSLRDTHLGDCEQLMADMLRQRNG 221


>gi|293607025|ref|ZP_06689369.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814622|gb|EFF73759.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 1149

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + Q  + +  A DPTRS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+
Sbjct: 7   LPQDHAARTDALDPTRSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAAS 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RVL  +        E +    +    +     +  +  HL    L+ P  L ++TI
Sbjct: 67  EMHARVLSKLRRGLDAPPEAMHERRSWELARAALARNDEQGWHL----LDHPARLAIRTI 122

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            +FC  +++  P  + +     I D+ ++    E A ++TL
Sbjct: 123 DSFCAGLVRSMPWLSELGGMPEITDDARAH--YEAAARATL 161


>gi|225570785|ref|ZP_03779808.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM
           15053]
 gi|225160247|gb|EEG72866.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM
           15053]
          Length = 1204

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 33/199 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ T+ +Q +     R+  VSA AGSGKT +LV+R++ +L     P    +LL +T T+A
Sbjct: 3   VAWTEEQQKVIDLRKRNILVSAAAGSGKTAVLVERIIAMLTDAEDPVSVESLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ + I                KI     N+   ++A     T++ +    ++
Sbjct: 63  AAAEMKERIRDAIE--------------KKISEDGENEHLKTQA-----TLIHSA---QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC ++++      +I   F +A+E + K +    K   L  ++ DN EE  +AF 
Sbjct: 101 TTIHSFCLSVIRDHFHAIDIDPGFRVAEEGELKLM----KHDVLGQVLEDNYEEGGEAFQ 156

Query: 194 EILEI----SNDEDIETLI 208
           E +E      +D  IE L+
Sbjct: 157 EFVEAYGSGRDDRKIEELV 175


>gi|297538865|ref|YP_003674634.1| Exodeoxyribonuclease V [Methylotenera sp. 301]
 gi|297258212|gb|ADI30057.1| Exodeoxyribonuclease V [Methylotenera sp. 301]
          Length = 1158

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 20/167 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT +L QR L+LL     P  ++ LT T  AAAEM +R+L    +  +  ++
Sbjct: 33  VEAPAGAGKTELLTQRYLKLLATVNEPEEIIALTFTNKAAAEMRNRIL---LSLENAQNQ 89

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            + A   K++ ++   + + ++      I+  P  L++ TI A C ++ +Q PL +    
Sbjct: 90  TVEAAAHKLKTRELANAALLQSNVKSWDIINQPSRLRILTIDALCSSLTRQMPLLSKFGG 149

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIM---------------LDNNEE 187
             A++D+  S  +  EA +  +A I+               LDNN E
Sbjct: 150 QPAVSDDTDSHYI--EASRRAIAHIVHETKPDDTVIVALSYLDNNSE 194


>gi|126652433|ref|ZP_01724605.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
 gi|126590704|gb|EAZ84819.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
          Length = 1238

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 31/182 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +L+ R++  ++A  +P     LL +T T A+AAEM HR           
Sbjct: 31  VSAAAGSGKTAVLINRMIEKVIATDNPINVDELLVVTFTNASAAEMRHR----------- 79

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               +S  + K   + P  + + +   L+          ++ T+H+FC AI++Q+    +
Sbjct: 80  ----MSEALEKAIVENPTSNHLRRQLSLI-------NKAQISTLHSFCLAIVKQYAYMLD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEI----SNDEDIETL 207
           I   F IA+E +   L ++     L     D+ EE + +A Y +++      +D+ IETL
Sbjct: 129 IDPGFRIANEAEVALLRDDIVADVLEG-AYDSEEETQIQAIYRLVDSFTSDRDDQAIETL 187

Query: 208 IS 209
           IS
Sbjct: 188 IS 189


>gi|77164502|ref|YP_343027.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707]
 gi|254433459|ref|ZP_05046967.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76882816|gb|ABA57497.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosococcus
           oceani ATCC 19707]
 gi|207089792|gb|EDZ67063.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 1146

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 11/192 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL-EI 85
           A +P  S  V A AGSGKT +L QR L LL     P  ++ +T T+ AAAEM +R++  +
Sbjct: 15  ALNPHGSFIVQAPAGSGKTELLTQRYLMLLARVEAPEEIVAITFTRKAAAEMRYRIIAAL 74

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
            +A  +   +   A+ T        + D  K      ++ + P  L++QTI + C ++ +
Sbjct: 75  ASAKENQPPKTEPAKTTWDLACAVRRRDEGKG----WSLEDHPARLRIQTIDSLCASLTR 130

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE--D 203
           Q PL +   +   I   E +++L  +A   TLA +  ++  E   +   +L   N+    
Sbjct: 131 QMPLLSRFGAQPGIT--EDAERLYRQAAHRTLAEV--ESGAEWSASVETLLRHLNNNWGK 186

Query: 204 IETLISDIISNR 215
           IE L+S +++ R
Sbjct: 187 IERLLSAMLARR 198


>gi|226325452|ref|ZP_03800970.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758]
 gi|225206195|gb|EEG88549.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758]
          Length = 1214

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 25/196 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ +Q +      +  VSA AGSGKT +LV+R++  L  +A+P     +L +T+T+A
Sbjct: 3   VKWTEEQQQVIDLRDHNILVSAAAGSGKTAVLVERIIARLTRDANPVDVDHMLIVTYTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                A I K   + P+   + +   L+ T        K+
Sbjct: 63  AAAEMKERI---------------GAAIEKELEEDPSSEHLKRQSALIHTA-------KI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC ++++++    ++   F IA+E + K L ++  K  L +   + NE+  +   
Sbjct: 101 TTIHSFCLSVIREYFHTIDLDPGFRIAEEGELKLLKQDVMKELLEAKYEEGNEDFLRFVE 160

Query: 194 EILEISNDEDIETLIS 209
                  D  +E +IS
Sbjct: 161 TFATGREDLQVEEIIS 176


>gi|187477416|ref|YP_785440.1| nuclease/helicase [Bordetella avium 197N]
 gi|115422002|emb|CAJ48524.1| putative nuclease/helicase [Bordetella avium 197N]
          Length = 1107

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 26/158 (16%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           Q  +++L A DP  S  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM
Sbjct: 7   QDHAQRLRALDPQTSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT-----------ILET 127
             RVLE               ++ + QG +P  +   ++  L              +L+ 
Sbjct: 67  HARVLE---------------KLARAQGPEPEAAHERRSWRLARAALARDAERGWHVLQH 111

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
           P  L ++TI +FC  +++  P  + +     IAD+ ++
Sbjct: 112 PARLAIRTIDSFCSGLVRGMPWLSGLGGMPDIADDARA 149


>gi|254785006|ref|YP_003072434.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901]
 gi|237686397|gb|ACR13661.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901]
          Length = 1138

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I    +E+  A +P +S    A AGSGKT +L QR L LL     P  +L +T T+ A 
Sbjct: 1   MIIADSTERRTALEPDQSFICEAPAGSGKTELLTQRYLVLLARVRRPEEILAITFTRKAT 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RVL  +    HL       E  +    +  ++ ++  +     +L+ P  L+++T
Sbjct: 61  GEMRERVLHAL----HLGRGPEPEEAHRQLTWQLARAVLAADQQHQWQLLDNPNRLQIKT 116

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
             + C ++ +Q P+E++  S   I D+  S +L   A  + L ++  D+
Sbjct: 117 FDSLCSSLTRQLPMESSFGSQPQITDD--SAELYRSAVHALLGTLEEDS 163


>gi|302879642|ref|YP_003848206.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302582431|gb|ADL56442.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 1099

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 3/190 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P RS  V A AGSGKT +LV RV+RLLL    P  +L +T T+ AA EM  R+ + +
Sbjct: 6   ALNPNRSVVVEACAGSGKTWLLVSRVVRLLLDGVAPGEILAITFTRKAAQEMQARLRDWL 65

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              +   D+ +   + + +G    +  + +AR L    L     + + T H +   I+Q+
Sbjct: 66  YELAAKDDDFVRDFLVQ-RGVDDVELALPRARLLYQQFLLARPSVTISTFHGWFMQILQR 124

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            P+ A   S   +   E++ +L +EA +  L  +      E  ++   + +     + ++
Sbjct: 125 APVSAG--SAGGVQLVEKTAQLWQEAWQMFLDELQSAPESETAQSMMVLFKELGLSNTQS 182

Query: 207 LISDIISNRT 216
           L+ + ++ R+
Sbjct: 183 LLGNFVNKRS 192


>gi|254281652|ref|ZP_04956620.1| UvrD/REP helicase [gamma proteobacterium NOR51-B]
 gi|219677855|gb|EED34204.1| UvrD/REP helicase [gamma proteobacterium NOR51-B]
          Length = 1113

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 30/172 (17%)

Query: 22  SEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           S+QL+   A DP RS  V+A AGSGKT +L QR + L+   A    +L LT T+ AAAEM
Sbjct: 2   SDQLIREQAIDPDRSVCVTAPAGSGKTALLTQRFMALMPRVAKLEQILALTFTRKAAAEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILE---------TP 128
             R+L               +E+   +  +P   D  + +R L  T L+           
Sbjct: 62  RARIL---------------SELDAARDNRPVNDDFERQSRQLASTALDHATSMGWSLQA 106

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            G  ++TI +FC  + +  P+ +        AD+  ++ L EEA ++   S+
Sbjct: 107 DGFNIRTIDSFCAYLTRHMPILSESGGLMQTADD--ARPLYEEAVRALFQSV 156


>gi|30250100|ref|NP_842170.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
 gi|30139207|emb|CAD86077.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
          Length = 1155

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 23/225 (10%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + E+  A DP  S  V A AGSGKT +L QR L LL     P  ++ +T T+ AA+EM H
Sbjct: 12  QRERQQALDPWHSFIVQAPAGSGKTGLLTQRFLVLLATVEEPEEIVAITFTRKAASEMKH 71

Query: 81  RVLEII--TAWSHLSD----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           R+L+ +  TA    SD      L  +  + Q ++     ++  +     +L+ P  L++Q
Sbjct: 72  RILQALRDTAGDINSDAESETALLNDAYQRQLRELANRVLAHDQARGWQLLQNPSRLRIQ 131

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TI + C  ++ + P+ +   +  ++A  E + +L  EA + T+ +  L+   E   A   
Sbjct: 132 TIDSLCAWLVDRMPVCSRQGALSSVA--EDADRLYLEAARLTVEA--LEEEGEWTAAIEH 187

Query: 195 IL-EISNDED-IETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           ++  + N  D ++ LI+D+++ R            LW R +++ +
Sbjct: 188 LIGHLDNRLDRLQQLIADMLARRD-----------LWLRGVVDAA 221


>gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille]
 gi|151281175|gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 1083

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 3/190 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP+RS  V A AGSGKT +LV RVLRLLLA   P+ +L +T T+ AA EM  R+++++
Sbjct: 22  ACDPSRSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAILAITFTRKAAQEMRERLMQLL 81

Query: 87  TAWSHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              +   D E+L+    +   ++     + +AR L   +L +P  L + T H++   ++Q
Sbjct: 82  HELTLKPDAEVLALLRERGIAEQALAETLPQARGLYEQVLRSPQALSIDTFHSWFARLIQ 141

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL + +   +++   E + +L+ +A    +  +   + + +K A  ++     D    
Sbjct: 142 IAPLASGVPHGYSLT--EATGELLSDAYSRFMQQVNEKDQQHVKDALVDLYTQVGDFSTR 199

Query: 206 TLISDIISNR 215
            L++  ++ R
Sbjct: 200 NLLNSFVAKR 209


>gi|169831437|ref|YP_001717419.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
           audaxviator MP104C]
 gi|251764572|sp|B1I493|ADDA_DESAP RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|169638281|gb|ACA59787.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 1230

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 39/188 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+RV+R +   A P     LL +T T AAAAEM  RV          
Sbjct: 23  VAAGAGSGKTAVLVERVIRRISDPAAPVDVDRLLVVTFTNAAAAEMRKRVA--------- 73

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E L  E+ K  G       M    H L  + +      + TIH+FC  +++++    +
Sbjct: 74  --EALERELEKHPG-------MPLLEHQLRLLPQA----DITTIHSFCAELLRRYHYLID 120

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +   F +ADE ++  L +E    TL        EE  +  Y +  I+ D D+E L+    
Sbjct: 121 LDPEFRVADETEAAILRQE----TL--------EEFFEEQYRV--ITGDPDLEFLVEAYG 166

Query: 213 SNRTALKL 220
             R  LKL
Sbjct: 167 GERDDLKL 174


>gi|260101292|ref|ZP_05751529.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260084877|gb|EEW68997.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 1204

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 21/184 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK ++   +D      VSA+AGSGKT +LV+RVL+ +LA      LL +T TKAAA EM 
Sbjct: 5   TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+                A +TK +  KP   D    R  L  I        + TI AF
Sbjct: 65  TRI---------------KAALTK-EMAKPG-VDYRYLREQLNQI----DTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ +F     +   F I  ++    L++E     +   ML + ++  + FY+     
Sbjct: 104 CLDVIHRFYYSIELDPSFTILTDDTQAALLKERALREIEGEMLTSKDKAFRHFYDNFAGD 163

Query: 200 NDED 203
            D D
Sbjct: 164 RDAD 167


>gi|323466409|gb|ADX70096.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus helveticus
           H10]
          Length = 1204

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 21/184 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK ++   +D      VSA+AGSGKT +LV+RVL+ +LA      LL +T TKAAA EM 
Sbjct: 5   TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+                A +TK +  KP   D    R  L  I        + TI AF
Sbjct: 65  TRI---------------KAALTK-EMAKPG-VDYRYLREQLNQI----DTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ +F     +   F I  ++    L++E     +   ML + ++  + FY+     
Sbjct: 104 CLDVIHRFYYSIELDPSFTILTDDTQAALLKERALREIEGEMLTSKDKAFRHFYDNFAGD 163

Query: 200 NDED 203
            D D
Sbjct: 164 RDAD 167


>gi|114775529|ref|ZP_01451097.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1]
 gi|114553640|gb|EAU56021.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1]
          Length = 1105

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +L A +P  S  V A AGSGKT +L QR+LRLL     P  +L LT T+ AAAEM  RVL
Sbjct: 6   RLQARNPAASFLVQAPAGSGKTELLTQRILRLLAVVDAPEEILALTFTRKAAAEMRGRVL 65

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           E +        E +     K+   +  ++ ++++      + + P  L++ T+ +F  A+
Sbjct: 66  EALAM-----TEPVDPASHKMDTWRLAQAALARSNACGWHLEKHPSRLRMMTLDSFTHAL 120

Query: 144 MQQFPL 149
             Q PL
Sbjct: 121 ASQMPL 126


>gi|161507624|ref|YP_001577578.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC
           4571]
 gi|251764556|sp|A8YVK0|ADDA_LACH4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|160348613|gb|ABX27287.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC
           4571]
          Length = 1204

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 21/184 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK ++   +D      VSA+AGSGKT +LV+RVL+ +LA      LL +T TKAAA EM 
Sbjct: 5   TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAAEEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+                A +TK +  KP   D    R  L  I        + TI AF
Sbjct: 65  TRI---------------KAALTK-EMAKPG-VDYRYLREQLNQI----DTANISTIDAF 103

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ +F     +   F I  ++    L++E     +   ML + ++  + FY+     
Sbjct: 104 CLDVIHRFYYSIELDPSFTILTDDTQATLLKERALREIEGEMLTSKDKAFRHFYDNFAGD 163

Query: 200 NDED 203
            D D
Sbjct: 164 RDAD 167


>gi|254796825|ref|YP_003081662.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii
           str. Illinois]
 gi|254590070|gb|ACT69432.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii
           str. Illinois]
          Length = 905

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            +DP  S W++++AG GKT +LV+R + LL++      +LC+T TK A AEM +R+  I+
Sbjct: 5   VTDPNVSVWINSSAGCGKTALLVKRAISLLVSKE--KNILCITFTKVATAEMHNRIFAIL 62

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
              S ++D  +   +     +     D    R L+ T       +++QT+H+FC
Sbjct: 63  GKLSVMNDTEMDEYLLSTINRTVKDPDY--VRKLVHT---ADALIQIQTLHSFC 111


>gi|238923931|ref|YP_002937447.1| DNA helicase II [Eubacterium rectale ATCC 33656]
 gi|238875606|gb|ACR75313.1| DNA helicase II [Eubacterium rectale ATCC 33656]
          Length = 1220

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 34/188 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   VSA AGSGKT +LV+R++  +  +  P     +L +T TKAAAAEM  RV      
Sbjct: 18  RDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKAAAAEMRERV------ 71

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                    S  I  ++ +KP+  ++ +   L+   L       + TI +FC  ++Q   
Sbjct: 72  ---------SCAIDSLKEQKPDDENLQRQSTLVHNAL-------ITTIDSFCLFVVQNNF 115

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEI----SNDED 203
            + N+   F I D+ + K ++++A    LA +  DN   E  +AF  +++      ND  
Sbjct: 116 AQLNLDPDFRIGDQAELKLMLKDA----LAQVFEDNYAREDNEAFINLIDTYSKGRNDSA 171

Query: 204 IETLISDI 211
           +  ++ DI
Sbjct: 172 VRQMVEDI 179


>gi|297584273|ref|YP_003700053.1| recombination helicase AddA [Bacillus selenitireducens MLS10]
 gi|297142730|gb|ADH99487.1| recombination helicase AddA [Bacillus selenitireducens MLS10]
          Length = 1244

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 35/179 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R +    +P+    LL +T T AAA EM HR+ E       L
Sbjct: 29  VAAAAGSGKTAVLVERIIRKITDEENPADLDRLLIVTFTNAAAQEMRHRIGEA------L 82

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHL---LITILETPGGLKVQTIHAFCEAIMQQFPL 149
            D+I               S+  ++ HL   L  + + P    + T+H+FC +I++ F  
Sbjct: 83  EDKI---------------SEQPRSLHLRRQLNLLHKAP----ISTLHSFCMSIVRDFYY 123

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETL 207
             +I   F I DE +   L +E  +          N +    FY+++E  SND   E L
Sbjct: 124 VTDIDPSFRILDETEGVLLRDEVLEELFEEAYSSKNPD---GFYDMVERFSNDRSDEGL 179


>gi|311067549|ref|YP_003972472.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus
           1942]
 gi|310868066|gb|ADP31541.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus
           1942]
          Length = 1234

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 29/165 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R + A  +P     +L +T T A+AAEM HR+ E       L
Sbjct: 28  VAAAAGSGKTAVLVERMIRKITAEENPIDVDRVLVVTFTNASAAEMKHRIAEA------L 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E++         K+P    + +   LL           + T+H+FC  +++++    +
Sbjct: 82  EKELV---------KRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLRKYYYLID 125

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +   F IAD+ + + L +E     L  +  D   + +KAF+E+++
Sbjct: 126 LDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFELVD 166


>gi|296332487|ref|ZP_06874948.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305673768|ref|YP_003865440.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150405|gb|EFG91293.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412012|gb|ADM37131.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 1234

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 33/183 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R + A  +P     LL +T T A+AAEM HR+ +       L
Sbjct: 28  VAAAAGSGKTAVLVERMIRKITAEENPIDVDQLLVVTFTNASAAEMKHRIADA------L 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E++         K+P    + +   LL           + T+H+FC  +++++    +
Sbjct: 82  EKELV---------KRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208
           +   F IAD+ + + L +E     L  +  D   + +KAF+E+++      +D D++ L+
Sbjct: 126 LDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181

Query: 209 SDI 211
             +
Sbjct: 182 KQV 184


>gi|319650046|ref|ZP_08004195.1| AddA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398227|gb|EFV78916.1| AddA protein [Bacillus sp. 2_A_57_CT2]
          Length = 1250

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 28/182 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++  ++A+  P     LL +T T A+AAEM HR+ E +      
Sbjct: 29  VAAAAGSGKTAVLVERIINKIIADEDPINVDELLVVTFTNASAAEMRHRIGEAL------ 82

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            ++ ++A+        P  + + K   LL           + T+H+FC  +++++    +
Sbjct: 83  -EKAINAD--------PKSAHLRKQVSLL-------NRASISTLHSFCLEMIRKYYYMTD 126

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           I   F IADE +++ L +E  +           +E  +AF+ +++   ++  +T + DII
Sbjct: 127 IDPGFRIADETEAQLLRDEVLEELFEEEY---GKEGNEAFFALVDTFTNDRSDTALQDII 183

Query: 213 SN 214
            +
Sbjct: 184 RD 185


>gi|291527058|emb|CBK92644.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale
           M104/1]
          Length = 1220

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 34/188 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   VSA AGSGKT +LV+R++  +  +  P     +L +T TKAAAAEM  RV      
Sbjct: 18  RDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKAAAAEMRERV------ 71

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                    S  I  ++ +KP+  ++ +   L+   L       + TI +FC  ++Q   
Sbjct: 72  ---------SRAIDSLKEQKPDDENLQRQSTLVHNAL-------ITTIDSFCLFVVQNNF 115

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-----NEELKKAFYEILEISNDED 203
            + N+   F I D+ + K ++++A    LA +  DN     NEE         +  ND  
Sbjct: 116 AQLNLDPDFRIGDQAELKLMLKDA----LAQVFEDNYAREDNEEFINLIDTYSKGRNDSA 171

Query: 204 IETLISDI 211
           +  ++ DI
Sbjct: 172 VRQMVEDI 179


>gi|291525355|emb|CBK90942.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale
           DSM 17629]
          Length = 1220

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 34/188 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   VSA AGSGKT +LV+R++  +  +  P     +L +T TKAAAAEM  RV      
Sbjct: 18  RDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKAAAAEMRERV------ 71

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                    S  I  ++ +KP+  ++ +   L+   L       + TI +FC  ++Q   
Sbjct: 72  ---------SRAIDSLKEQKPDDENLQRQSTLVHNAL-------ITTIDSFCLFVVQNNF 115

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-----NEELKKAFYEILEISNDED 203
            + N+   F I D+ + K ++++A    LA +  DN     NEE         +  ND  
Sbjct: 116 AQLNLDPDFRIGDQAELKLMLKDA----LAQVFEDNYAREDNEEFINLIDTYSKGRNDSA 171

Query: 204 IETLISDI 211
           +  ++ DI
Sbjct: 172 VRQMVEDI 179


>gi|291483547|dbj|BAI84622.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
           natto BEST195]
          Length = 1232

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 33/183 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R + A  +P     LL +T T A+AAEM HR+ E       L
Sbjct: 28  VAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA------L 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E++         ++P    + +   LL           + T+H+FC  +++++    +
Sbjct: 82  EKELV---------QRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208
           +   F IAD+ + + L +E     L  +  D   + +KAF+E+++      +D D++ L+
Sbjct: 126 LDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181

Query: 209 SDI 211
             +
Sbjct: 182 KQV 184


>gi|321314788|ref|YP_004207075.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis BSn5]
 gi|320021062|gb|ADV96048.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           BSn5]
          Length = 1232

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 33/183 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R + A  +P     LL +T T A+AAEM HR+ E       L
Sbjct: 28  VAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA------L 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E++         ++P    + +   LL           + T+H+FC  +++++    +
Sbjct: 82  EKELV---------QRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208
           +   F IAD+ + + L +E     L  +  D   + +KAF+E+++      +D D++ L+
Sbjct: 126 LDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181

Query: 209 SDI 211
             +
Sbjct: 182 KQV 184


>gi|254514374|ref|ZP_05126435.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3]
 gi|219676617|gb|EED32982.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3]
          Length = 1108

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 9/199 (4%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP  S  VSA AGSGKT +LV+R L LL     P  ++ +T T+ AAAEM  RV   +
Sbjct: 12  AVDPLGSFCVSAPAGSGKTGLLVRRFLGLLARVKDPEHVVAITFTRKAAAEMRARV---V 68

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A       + +    +        +     R L   +L  P  L++QTI +FC  + +Q
Sbjct: 69  NALRDAEAGVTAGNPHEEALLAAAHAVREHDRALGWGLLANPSRLRIQTIDSFCGYLTRQ 128

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            P+ +         D+  S+ L  EA +S L   +    E  +    + L +  D D ET
Sbjct: 129 MPVLSGCGGQVTATDD--SRPLFREAIESFLHRELAQAGEG-QALDIQTLLLHLDNDWET 185

Query: 207 ---LISDIISNRTALKLIF 222
              L+S +++ R   + +F
Sbjct: 186 AVELLSGLLARREQWQPVF 204


>gi|291535312|emb|CBL08424.1| recombination helicase AddA, Firmicutes type [Roseburia
           intestinalis M50/1]
          Length = 1237

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R+  VSA AGSGKT +LV+R+++++    HP     LL +T T AAAAEM  R+   +  
Sbjct: 18  RNILVSAAAGSGKTAVLVERIIKIITDKEHPVDIDRLLIVTFTNAAAAEMRERIGNALE- 76

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                              K N  D    R L  ++L      ++ TI +FC  +++   
Sbjct: 77  ----------------NALKENPDDEHLQRQL--SLLHNA---QITTIDSFCLYVIRNHF 115

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            E ++  +F I DE + K L    K+  LA ++L N EE    F   ++       +  +
Sbjct: 116 HEIDLEPNFRIGDEGELKLL----KEDVLAKVLLKNYEESAPEFLAFVDGYASGRNDAAL 171

Query: 209 SDIISNRTALKLIFFFFSYLWRRK 232
           S +I     L+L  F  SY W +K
Sbjct: 172 SGMI-----LQLYEFSRSYPWPKK 190


>gi|315148450|gb|EFT92466.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4244]
          Length = 1264

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  K RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPEKRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|240144976|ref|ZP_04743577.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82]
 gi|257202969|gb|EEV01254.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82]
          Length = 1237

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R+  VSA AGSGKT +LV+R+++++    HP     LL +T T AAAAEM  R+      
Sbjct: 18  RNILVSAAAGSGKTAVLVERIIKIITDKEHPVDIDRLLIVTFTNAAAAEMRERI------ 71

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       +     ++P+   + +   LL          ++ TI +FC  +++   
Sbjct: 72  ---------GNALENALKEQPDDEHLQRQLSLL-------HNAQITTIDSFCLYVIRNHF 115

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            E ++  +F I DE + K L    K+  LA ++L N EE    F   ++       +  +
Sbjct: 116 HEIDLEPNFRIGDEGELKLL----KEDVLAKVLLKNYEESAPEFLAFVDGYASGRNDAAL 171

Query: 209 SDIISNRTALKLIFFFFSYLWRRK 232
           S +I     L+L  F  SY W +K
Sbjct: 172 SGMI-----LQLYEFSRSYPWPKK 190


>gi|148244252|ref|YP_001218946.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326079|dbj|BAF61222.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA]
          Length = 1056

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 31/202 (15%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A D ++S  + A AGSGKT +L QR L+LL  +  P +++ +T TK A +E++ RV+E  
Sbjct: 10  ALDVSQSFIIQAPAGSGKTELLTQRYLKLLSVSTSPESVIVMTFTKKAVSELTTRVIE-- 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGGLKVQT 135
                      S E+   QG +P               + +++ L   +L TP   K+ T
Sbjct: 68  -----------SLELA--QGNRPKDPHKQIIYDLAFQVLERSKELDWQLLNTPERFKILT 114

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +    I   +P +  +     I+       +  +A K TL +I   N  E + +   I
Sbjct: 115 IDSLSSLITSHYPSKNQLVPKKVISQNWARYSMYSQAAKQTLLAI---NELEYQDSVESI 171

Query: 196 -LEISNDED-IETLISDIISNR 215
            L + N+ D    LI+D+++ R
Sbjct: 172 LLYLDNNIDRFYQLITDMLAKR 193


>gi|119503960|ref|ZP_01626041.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080]
 gi|119459963|gb|EAW41057.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080]
          Length = 1115

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 28/168 (16%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ID  +Q ++  L   DPTRS  V+A AGSGKT +L QR+L LL     P  +L +T T+ 
Sbjct: 2   IDSDTQIRTTAL---DPTRSFCVTAPAGSGKTELLTQRILALLPTVDRPEQVLAMTFTRK 58

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE------- 126
           AAAEM  R+L      S L +     E+         +S   + R L + +L        
Sbjct: 59  AAAEMRERLL------SKLDEARRRVEVI--------ESYEQQTRDLALAVLAHADERNW 104

Query: 127 --TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
              P    ++TI + C  + +Q P+ + +    A+   EQ K L E A
Sbjct: 105 SLDPEQFNLRTIDSLCADLTRQMPILSGLGG--AVEITEQDKPLFELA 150


>gi|291538110|emb|CBL11221.1| recombination helicase AddA, Firmicutes type [Roseburia
           intestinalis XB6B4]
          Length = 1237

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R+  VSA AGSGKT +LV+R+++++    HP     LL +T T AAAAEM  R+      
Sbjct: 18  RNILVSAAAGSGKTAVLVERIIKIITDKDHPVDIDRLLIVTFTNAAAAEMRERI------ 71

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       +     ++P+   + +   LL          ++ TI +FC  +++   
Sbjct: 72  ---------GNALENALKEQPDDEHLQRQLSLL-------HNAQITTIDSFCLYVIRNHF 115

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            E ++  +F I DE + K L    K+  LA ++L N EE    F   ++       +  +
Sbjct: 116 HEIDLEPNFRIGDEGELKLL----KEDVLAKVLLKNYEESAPEFLAFVDGYASGRNDAAL 171

Query: 209 SDIISNRTALKLIFFFFSYLWRRK 232
           S +I     L+L  F  SY W +K
Sbjct: 172 SGMI-----LQLYEFSRSYPWPKK 190


>gi|121594696|ref|YP_986592.1| UvrD/REP helicase [Acidovorax sp. JS42]
 gi|120606776|gb|ABM42516.1| UvrD/REP helicase [Acidovorax sp. JS42]
          Length = 1101

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+ E 
Sbjct: 25  IACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQEW 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +  ++      L  E+   +G  P ++     + + L    L+    ++++T H++  A+
Sbjct: 85  LQEFAAKPLPDLEKELIA-RGIGPQRALDKREQLQKLYRQTLDAGRPVQIRTFHSWFAAL 143

Query: 144 MQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           +   PL    +  + +H+ + +++   + + E  +  LA++  D
Sbjct: 144 LGTAPLAVLEQQGLPAHYDLLEDD--AEAVREVWRPYLAAVAQD 185


>gi|222110700|ref|YP_002552964.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221730144|gb|ACM32964.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 1101

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+ E 
Sbjct: 25  IACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQEW 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +  ++      L  E+   +G  P ++     + + L    L+    ++++T H++  A+
Sbjct: 85  LQEFAAKPLPDLEKELIA-RGIGPQRALEKREQLQKLYRQTLDAGRPVQIRTFHSWFAAL 143

Query: 144 MQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           +   PL    +  + +H+ + +++   + + E  +  LA++  D
Sbjct: 144 LGTAPLAVLEQQGLPAHYDLLEDD--AEAVREVWRPYLAAVAQD 185


>gi|71906108|ref|YP_283695.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
 gi|71845729|gb|AAZ45225.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
          Length = 1134

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 17/137 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT +L QR LRLL    HP  +L LT T  AA EM  R+L         S E
Sbjct: 26  VEAPAGAGKTELLTQRYLRLLAVVEHPEEVLALTFTNKAATEMRDRILG--------SLE 77

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLI-------TILETPGGLKVQTIHAFCEAIMQQFP 148
           + S +  K+  +   +     AR +L        ++L  PG L++ T+ + C ++ +Q P
Sbjct: 78  LASGD--KLPEQPHKQLTFGLARQVLAHDAERGWSLLGHPGRLRITTLDSLCASLARQMP 135

Query: 149 LEANITSHFAIADEEQS 165
             +   S   ++D+ ++
Sbjct: 136 YLSRFGSQPGVSDDAEA 152


>gi|322435329|ref|YP_004217541.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
 gi|321163056|gb|ADW68761.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 1165

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 34/196 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AGSGKT +L+QR L+LL A+    P+ +L +T T+ A  EM  RVL          
Sbjct: 32  VQAPAGSGKTGLLIQRFLKLLAADNVQDPAQVLAITFTRKATVEMRDRVL---------- 81

Query: 94  DEILSAEITKIQGKKPNKSD------------MSKARHLLITILETPGGLKVQTIHAFCE 141
                 ++       P ++D            + K R     +L++P  L ++TI + C 
Sbjct: 82  -----TQLQSAHTGTPPRNDFDRLTLPLAQAVIEKDRRQGWNLLDSPHRLAIRTIDSVCV 136

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--EIS 199
            I +  P+ +      A+   E S  L  EA + TL  ++   ++ L  A   +L    +
Sbjct: 137 DIARSLPILSGAAG--ALTPTEDSAPLHAEAARRTLM-LLGSEDKTLSTAIETVLLHRDA 193

Query: 200 NDEDIETLISDIISNR 215
           N  D+E LI+D++  R
Sbjct: 194 NLADVENLIADMLQVR 209


>gi|254480724|ref|ZP_05093971.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039307|gb|EEB79967.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 1115

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 8/178 (4%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A D  RS  V+A AGSGKT +L+QR L LL     P  +L +T T+ AAAEM  RVL+ +
Sbjct: 12  ALDVVRSFCVTAPAGSGKTELLIQRFLALLARVKRPEQVLAITFTRKAAAEMRERVLQAL 71

Query: 87  -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
             A   ++ E     +T+       +S   +  HL   I      L ++TI +FC  + +
Sbjct: 72  QAARDKVAVEGEHQRVTRDLALAALESSDREQWHLARDISR----LNIKTIDSFCAGLTR 127

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           Q P+ +         D+  + +L +EA  S L SI   +  E       +L   N+ D
Sbjct: 128 QMPILSRFGGQAQAVDD--ATELYKEA-VSELFSIAGTSRSEATDLDILLLHFDNNWD 182


>gi|300859922|ref|ZP_07106010.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11]
 gi|300850740|gb|EFK78489.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11]
          Length = 1264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|239815308|ref|YP_002944218.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239801885|gb|ACS18952.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 1087

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 7/130 (5%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHR 81
           +A DP RS  V A AG+GKT +LV R+LR LL    +   P  +L +T TK AA EM  R
Sbjct: 21  VACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGESACEPHEILAITFTKKAAGEMRER 80

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNK--SDMSKARHLLITILETPGGLKVQTIHAF 139
           + + +  ++  S E L  E+  I+G +P+   + + + + L   +LE    ++ +T HA+
Sbjct: 81  LDQWLEQFAERSPEELVRELV-IRGVEPDAALAAVPRLQGLYRRLLEGGRPVQFRTFHAW 139

Query: 140 CEAIMQQFPL 149
              +++  PL
Sbjct: 140 FAGLLRNAPL 149


>gi|315573705|gb|EFU85896.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309B]
 gi|315582680|gb|EFU94871.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309A]
          Length = 1264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|319778427|ref|YP_004129340.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9]
 gi|317108451|gb|ADU91197.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9]
          Length = 1109

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 6/156 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I+  + ++ LA D ++S  V A AGSGKT IL  R+L LL     P  +L +T TK AA+
Sbjct: 5   IAADQKQRDLALDSSKSYIVQAPAGSGKTEILSTRILSLLCVVEKPEQILAITFTKKAAS 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV E +   S+   E   +E  K+  +  NK  + + +     ILE     +++TI
Sbjct: 65  EMLDRVYEKLLNHSNPEPE---SEFEKLSWELANKV-IQRDKEKNWKILENLDRFRIRTI 120

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            +F + ++   PL + + +   +   E ++ L  EA
Sbjct: 121 DSFTKNLISNTPLISGVGA--GVEFTENAESLFHEA 154


>gi|255973164|ref|ZP_05423750.1| UvrD/REP helicase [Enterococcus faecalis T1]
 gi|257422970|ref|ZP_05599960.1| exonuclease rexA [Enterococcus faecalis X98]
 gi|312951365|ref|ZP_07770263.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102]
 gi|255964182|gb|EET96658.1| UvrD/REP helicase [Enterococcus faecalis T1]
 gi|257164794|gb|EEU94754.1| exonuclease rexA [Enterococcus faecalis X98]
 gi|310630625|gb|EFQ13908.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102]
          Length = 1264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|307274585|ref|ZP_07555765.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134]
 gi|306508737|gb|EFM77827.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134]
          Length = 1263

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|257082924|ref|ZP_05577285.1| exonuclease RexA [Enterococcus faecalis E1Sol]
 gi|256990954|gb|EEU78256.1| exonuclease RexA [Enterococcus faecalis E1Sol]
          Length = 1264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|315170964|gb|EFU14981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1342]
          Length = 1271

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 31  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 86  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 185 -DDGLTN-----LIFSFYEF 198


>gi|295112697|emb|CBL31334.1| DNA helicase/exodeoxyribonuclease V, subunit A [Enterococcus sp.
           7L76]
 gi|315160943|gb|EFU04960.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0645]
          Length = 1264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|317052675|ref|YP_004113791.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
 gi|316947759|gb|ADU67235.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
          Length = 1123

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A D + S  V A AGSGKT +L QR L LL   + P  +L +T T+ A  EM  RVL  +
Sbjct: 16  ALDISTSFIVQAPAGSGKTELLTQRFLALLGQVSEPEEILAITFTRKAVGEMRERVLGSL 75

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                L  E  +A   +   +    +  +  R     +LE P  L++QTI A C +I++Q
Sbjct: 76  RM--ALDAEPPAAPHLRTTWELARAALANARRQEW-NLLEHPTRLRIQTIDALCASIVRQ 132

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            P  + +    AI+DE    +L  +A   TL  +
Sbjct: 133 IPYFSRLGGQMAISDE--PARLYRQAAMQTLEEL 164


>gi|227552897|ref|ZP_03982946.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           HH22]
 gi|227177969|gb|EEI58941.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           HH22]
          Length = 1264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|327534744|gb|AEA93578.1| ATP-dependent nuclease subunit A [Enterococcus faecalis OG1RF]
          Length = 1271

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 31  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 86  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 185 -DDGLTN-----LIFSFYEF 198


>gi|229550393|ref|ZP_04439118.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           ATCC 29200]
 gi|229304515|gb|EEN70511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           ATCC 29200]
 gi|315156546|gb|EFU00563.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0043]
 gi|315158289|gb|EFU02306.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0312]
          Length = 1271

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 31  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 86  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 185 -DDGLTN-----LIFSFYEF 198


>gi|29375689|ref|NP_814843.1| exonuclease RexA [Enterococcus faecalis V583]
 gi|81437087|sp|Q836J8|ADDA_ENTFA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|29343150|gb|AAO80913.1| exonuclease RexA [Enterococcus faecalis V583]
          Length = 1264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|256965486|ref|ZP_05569657.1| UvrD/REP helicase [Enterococcus faecalis HIP11704]
 gi|307273804|ref|ZP_07555026.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855]
 gi|256955982|gb|EEU72614.1| UvrD/REP helicase [Enterococcus faecalis HIP11704]
 gi|306509489|gb|EFM78537.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855]
          Length = 1264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|315168381|gb|EFU12398.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1341]
          Length = 1264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|315144626|gb|EFT88642.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2141]
          Length = 1271

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 31  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 86  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 185 -DDGLTN-----LIFSFYEF 198


>gi|221308901|ref|ZP_03590748.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313225|ref|ZP_03595030.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318148|ref|ZP_03599442.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322423|ref|ZP_03603717.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|255767243|ref|NP_388944.2| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|239938590|sp|P23478|ADDA_BACSU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|225184870|emb|CAB12903.2| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 1232

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 33/183 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R + A  +P     LL +T T A+AAEM HR+ E       L
Sbjct: 28  VAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA------L 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E++         ++P    + +   LL           + T+H+FC  +++++    +
Sbjct: 82  EKELV---------QRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208
           +   F IAD+ + + + +E     L  +  D   + +KAF+E+++      +D D++ L+
Sbjct: 126 LDPGFRIADQTEGELIGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181

Query: 209 SDI 211
             +
Sbjct: 182 KQV 184


>gi|142440|gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis]
 gi|2226192|emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1232

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 33/183 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R + A  +P     LL +T T A+AAEM HR+ E       L
Sbjct: 28  VAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA------L 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E++         ++P    + +   LL           + T+H+FC  +++++    +
Sbjct: 82  EKELV---------QRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208
           +   F IAD+ + + + +E     L  +  D   + +KAF+E+++      +D D++ L+
Sbjct: 126 LDPGFRIADQTEGELIGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181

Query: 209 SDI 211
             +
Sbjct: 182 KQV 184


>gi|315174632|gb|EFU18649.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1346]
          Length = 1271

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 31  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 86  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 185 -DDGLTN-----LIFSFYEF 198


>gi|315153691|gb|EFT97707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0031]
          Length = 1271

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 31  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 86  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 185 -DDGLTN-----LIFSFYEF 198


>gi|291562493|emb|CBL41309.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [butyrate-producing
           bacterium SS3/4]
          Length = 571

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 25/134 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R+  VSA AGSGKT +LV+R++R++    HP     LL +T T AAAAEM  RV    TA
Sbjct: 18  RNLLVSAAAGSGKTAVLVERIIRMITDPEHPVDIDKLLVMTFTNAAAAEMRERVE---TA 74

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L DE             P   ++ +   L+          K+ TI +FC  ++++  
Sbjct: 75  LGKLLDE------------DPGNKNLERQNTLIHHA-------KITTIDSFCLNLLREHF 115

Query: 149 LEANITSHFAIADE 162
            E ++   F +ADE
Sbjct: 116 HELDLDPGFRVADE 129


>gi|227518367|ref|ZP_03948416.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus
           faecalis TX0104]
 gi|227074045|gb|EEI12008.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus
           faecalis TX0104]
          Length = 708

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207
              +I   F +  +E    L++E     L       N+E   AFY++    SND      
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177

Query: 208 ISDIISNRTALKLIFFFFSY 227
             D ++N     LIF F+ +
Sbjct: 178 -DDGLTN-----LIFSFYEF 191


>gi|78043588|ref|YP_360999.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575608|sp|Q3AA35|ADDA_CARHZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|77995703|gb|ABB14602.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1167

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 29/182 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AG+GKT +LV+RVL  +L +  P     LL +T T+AAA EM  R           
Sbjct: 21  VSAAAGAGKTSVLVERVLSRVLTDTPPVDIDRLLVVTFTEAAAGEMKER----------- 69

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               L  E+ K   + P  S + +   LL           + T+H+FC  I++++     
Sbjct: 70  ----LGTELLKRLNEDPGNSRILEQLELLPVA-------DISTLHSFCHKIIRKYGRVCG 118

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
             + FAI +  +   L    K   L  I+ +  E+  +  + +LE  NDE  +  + ++I
Sbjct: 119 YETKFAILEGPRETYL----KNKVLEEILEERYEKGDRELFALLEYLNDEKNDRNLKELI 174

Query: 213 SN 214
            N
Sbjct: 175 LN 176


>gi|242309299|ref|ZP_04808454.1| helicase [Helicobacter pullorum MIT 98-5489]
 gi|239524340|gb|EEQ64206.1| helicase [Helicobacter pullorum MIT 98-5489]
          Length = 921

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHL 92
           ++A+AGSGKT+ LV R L LL   A PS +L LT TK AA EM  R+   +  I  + + 
Sbjct: 8   LNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIAKSIGEIYQYRND 67

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFPLE 150
            D I   E   I+    +K+D  K +  +  I  +     LK+ TI +F + I++ F   
Sbjct: 68  IDYINKLECISIK----DKNDFGKLQEKIHQIYHSFLKEDLKITTIDSFFQRILKSFCWY 123

Query: 151 ANITSHFAIADEEQSK 166
             +   F I  +++ K
Sbjct: 124 VGVEYDFEIQSDDREK 139


>gi|317405925|gb|EFV86204.1| nuclease/helicase [Achromobacter xylosoxidans C54]
          Length = 1190

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           DP RS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  RVL  +  
Sbjct: 19  DPARSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVLSKLRR 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E      +    +     + ++  HL    L+ P  L ++TI +FC  +++  P
Sbjct: 79  GLDAPPEAAHERRSWDLARAALARNDAQQWHL----LDHPARLAIRTIDSFCAGLVRSMP 134

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTL 177
             + +     I D+ ++    E A ++TL
Sbjct: 135 WLSELGGMPEITDDARAH--YEAAARATL 161


>gi|253580235|ref|ZP_04857501.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848328|gb|EES76292.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1269

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 25/198 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK +Q +     R+  VSA AGSGKT +LV+R+L  +    HP     LL +T T+A
Sbjct: 3   VQWTKEQQEVIRLRDRNILVSAAAGSGKTAVLVERILSKITDKEHPVDIDRLLIMTFTRA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+               SA I K   + P+   + +   LL T        ++
Sbjct: 63  AAGEMKERI---------------SAAIEKALCEDPDNEHLQRQTTLLHTA-------QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI  FC  I++ +     +   +  ADE + K L  +  K+ L       +E+ +K   
Sbjct: 101 TTIDGFCAYIIRNYFHLIGLDPGYRTADEGELKLLRGDVVKALLEEYYAKKDEKFQKFVE 160

Query: 194 EILEISNDEDIETLISDI 211
                 +DE++  LI  +
Sbjct: 161 CFATGKSDENLGNLIQKL 178


>gi|325125706|gb|ADY85036.1| ATP-dependent exonuclease subunit A [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 1227

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA+AGSGKT +LV+RV+R ++ +    + LL +T T+AAA+EM  R+ +          
Sbjct: 22  VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   ++Q +   ++D S+A  L   + E    + + TI +FC  ++++F    +I 
Sbjct: 72  --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             F+I  +    +L++E     + +  L N ++ KK
Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158


>gi|256371278|ref|YP_003109102.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007862|gb|ACU53429.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 715

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 38/149 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           S++   S P     V A AGSGKT +L +RV  LL A   PS++L +T T  AA EM+ R
Sbjct: 12  SQREAVSAPIGPVLVLAGAGSGKTRVLTRRVAWLLAAGERPSSILAITFTNKAAGEMAER 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  ++                      PN                   GL V T HA C 
Sbjct: 72  VRSLV---------------------GPNAD-----------------GLWVSTFHAACA 93

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIE 170
            +++  P    + S ++I D++ +++L+E
Sbjct: 94  RMLRLHPELGGLRSGWSIYDQDDARRLLE 122


>gi|308173040|ref|YP_003919745.1| ATP-dependent deoxyribonuclease subunit A [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605904|emb|CBI42275.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
           amyloliquefaciens DSM 7]
          Length = 1235

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 33/187 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R++R + A   P     LL +T T A+AAEM HR+ E    
Sbjct: 25  RDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASAAEMKHRIAE---- 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K   K P    + +   LL           + T+H+FC  +++++ 
Sbjct: 81  -----------ALEKELAKNPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYY 122

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F +AD+ + + L +E     L  +  D   +  +AFYE+++      +D D+
Sbjct: 123 YMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFYELVDRYTTDRHDLDL 178

Query: 205 ETLISDI 211
           + L+  +
Sbjct: 179 QDLVKRV 185


>gi|91788136|ref|YP_549088.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91697361|gb|ABE44190.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 1095

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 17/141 (12%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLL--------ANAHPSTLLCLTHTKAAAAE 77
           +A +P RS  V A AG+GKT +LV R++R LL        A   P  +L +T TK AA E
Sbjct: 24  IACNPRRSVAVEACAGAGKTWMLVSRIVRALLDGAGGGPDAQVRPHEILAITFTKKAAGE 83

Query: 78  MSHRVLEIITAWSHLSDEILSAEI---------TKIQGKKPNKSDMSKARHLLITILETP 128
           M  R+ + + A+ H  D  L  E+         +  +G K       +  +L  +IL + 
Sbjct: 84  MRERLDDWLKAFVHADDATLQRELEMRGVRFGDSSEKGLKAALEMRKQLSNLYRSILASG 143

Query: 129 GGLKVQTIHAFCEAIMQQFPL 149
             ++++T H++  A+++  P+
Sbjct: 144 RSVQIRTFHSWFAALLRSAPV 164


>gi|328911095|gb|AEB62691.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
           amyloliquefaciens LL3]
          Length = 1234

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 33/187 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R++R + A   P     LL +T T A+AAEM HR+ E    
Sbjct: 24  RDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASAAEMKHRIAE---- 79

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K   K P    + +   LL           + T+H+FC  +++++ 
Sbjct: 80  -----------ALEKELAKNPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYY 121

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F +AD+ + + L +E     L  +  D   +  +AFYE+++      +D D+
Sbjct: 122 YMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFYELVDRYTTDRHDLDL 177

Query: 205 ETLISDI 211
           + L+  +
Sbjct: 178 QDLVKRV 184


>gi|325686249|gb|EGD28292.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 1227

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA+AGSGKT +LV+RV+R ++ +    + LL +T T+AAA+EM  R+ +          
Sbjct: 22  VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   ++Q +   ++D S+A  L   + E    + + TI +FC  ++++F    +I 
Sbjct: 72  --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             F+I  +    +L++E     + +  L N ++ KK
Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158


>gi|312903646|ref|ZP_07762822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635]
 gi|310632999|gb|EFQ16282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635]
          Length = 1264

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDR---- 176

Query: 207 LISDIISNRTALKLIFFFFSY 227
                 S+    KLIF F+ +
Sbjct: 177 ------SDDGLTKLIFSFYEF 191


>gi|116514017|ref|YP_812923.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275213|sp|Q04AN7|ADDA_LACDB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116093332|gb|ABJ58485.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1227

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA+AGSGKT +LV+RV+R ++ +    + LL +T T+AAA+EM  R+ +          
Sbjct: 22  VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   ++Q +   ++D S+A  L   + E    + + TI +FC  ++++F    +I 
Sbjct: 72  --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             F+I  +    +L++E     + +  L N ++ KK
Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158


>gi|328951963|ref|YP_004369297.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
 gi|328452287|gb|AEB08116.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
          Length = 1137

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 32/166 (19%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + ++ LA +P+ S  V A AGSGKT +L++R L LL     P  +L LT T+ AA E+  
Sbjct: 9   QRDRELAVNPSYSVHVEAPAGSGKTTVLLKRYLTLLARVEEPEEVLALTFTRKAAGELRA 68

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH------LLITILETPGG---- 130
           R+ +                  ++QG     SD++ ++H      L  T+          
Sbjct: 69  RIQQ------------------QLQGGTEQPSDVAPSQHAVELRELAQTVSHQQADKKNG 110

Query: 131 ----LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
               L++ T H+FC  +++  P  AN+   F + ++ ++  L +EA
Sbjct: 111 YFERLQISTFHSFCAQLLRLAPHNANLPPDFQLIEDREADWLKKEA 156


>gi|300812417|ref|ZP_07092847.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496584|gb|EFK31676.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 1227

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA+AGSGKT +LV+RV+R ++ +    + LL +T T+AAA+EM  R+ +          
Sbjct: 22  VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   ++Q +   ++D S+A  L   + E    + + TI +FC  ++++F    +I 
Sbjct: 72  --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             F+I  +    +L++E     + +  L N ++ KK
Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158


>gi|323489925|ref|ZP_08095147.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2]
 gi|323396432|gb|EGA89256.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2]
          Length = 1202

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 25/147 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +L+ R++  +LA   P     LL +T T A+AAEM HR           
Sbjct: 28  VSAAAGSGKTAVLINRMIEKVLAEDDPISVDELLVVTFTNASAAEMRHR----------- 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               +S  + K   + P+ S + K   L+          ++ T+H+FC  +++Q+     
Sbjct: 77  ----MSKALEKAVAENPDSSHLRKQLRLI-------NKAQISTLHSFCLQVVKQYAYLLE 125

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLAS 179
           I   F IA E ++  L ++  ++ L S
Sbjct: 126 IDPGFRIAGETEAALLRDDVLEAVLES 152


>gi|104774001|ref|YP_618981.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|123251916|sp|Q1GAA9|ADDA_LACDA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|103423082|emb|CAI97803.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1227

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA+AGSGKT +LV+RV+R ++ +    + LL +T T+AAA+EM  R+ +          
Sbjct: 22  VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   ++Q +   ++D S+A  L   + E    + + TI +FC  ++++F    +I 
Sbjct: 72  --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             F+I  +    +L++E     + +  L N ++ KK
Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158


>gi|224418267|ref|ZP_03656273.1| putative recombination protein RecB [Helicobacter canadensis MIT
           98-5491]
          Length = 419

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 8/131 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           ++A+AGSGKT+ LV R L LL   A PS +L LT TK AA EM  R+++ I       ++
Sbjct: 8   LNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIVKSIQEIYQRKND 67

Query: 96  ---ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
              I   E   I   +  +  ++K  +  +        LK+ TI +F + I++ F     
Sbjct: 68  REYIKKLEFISINDLEGIEQKITKIYYEFLR-----EDLKITTIDSFFQRILKSFCWYVG 122

Query: 153 ITSHFAIADEE 163
           + ++F I +E+
Sbjct: 123 VENNFEIQNED 133


>gi|269468160|gb|EEZ79862.1| ATP-dependent DNA helicase [uncultured SUP05 cluster bacterium]
          Length = 1058

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A D TRS  V A AGSGKT +L QR L+LL     P  ++ +T T  A  E++ RVL  +
Sbjct: 10  ALDVTRSFIVQAPAGSGKTELLAQRYLKLLSICDDPENVMAMTFTNKAVDELTERVLSSL 69

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            + +    +    +IT     K     M ++++    +L+ P  LK+ TI      I  +
Sbjct: 70  KSTNEPRPKQAHKQITYDLALKV----MERSQNRNWQLLQMPQRLKIFTIDGLSSLITGR 125

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           +P    +     +A + + KK+   A +  L  +M+D+ E  K
Sbjct: 126 YPTPLQLVPPRIMAQDWERKKVYRLAAEQVL--VMIDDEEHSK 166


>gi|212640054|ref|YP_002316574.1| ATP-dependent exoDNAse (exonuclease V) subunit beta (contains
           helicase and exonuclease domains) [Anoxybacillus
           flavithermus WK1]
 gi|251764497|sp|B7GM51|ADDA_ANOFW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|212561534|gb|ACJ34589.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Anoxybacillus
           flavithermus WK1]
          Length = 1209

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 26/195 (13%)

Query: 18  SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           SQ   EQ  A   T +   V+A AGSGKT +LV+R+++ +L    P     LL +T T A
Sbjct: 9   SQWTDEQWQAIYATGQHTLVAAAAGSGKTAVLVERIIQKILHKERPIDVDRLLVVTFTNA 68

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ E                + +   K+P+   + +   LL           +
Sbjct: 69  AAAEMRQRIGE---------------ALERALEKEPHSLHLRRQLSLLQKA-------SI 106

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC  +++++     I   F IADE +   L EE  ++       +N+E       
Sbjct: 107 STIHSFCLDVIRKYYYVIGIDPVFRIADEGEMALLKEEVLETLFEQYYAENDEPFLTVVD 166

Query: 194 EILEISNDEDIETLI 208
                  D D++TLI
Sbjct: 167 RYTSDRTDADLQTLI 181


>gi|257866180|ref|ZP_05645833.1| UvrD/REP helicase [Enterococcus casseliflavus EC30]
 gi|257872511|ref|ZP_05652164.1| UvrD/REP helicase [Enterococcus casseliflavus EC10]
 gi|257800114|gb|EEV29166.1| UvrD/REP helicase [Enterococcus casseliflavus EC30]
 gi|257806675|gb|EEV35497.1| UvrD/REP helicase [Enterococcus casseliflavus EC10]
          Length = 1225

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 22/177 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L A     +LL +T T+AAA EM  R+             
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAAREMKERIQ------------ 77

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                   +Q     +SD  K +H +  +   P    + T+HAFC  ++++F    ++  
Sbjct: 78  ------VALQQAINQESDEQKRQHFVRQLQLLPTA-NISTLHAFCLTVIRRFYYLIDLDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +F +  +E    L++E   + L +   + N+E   AF+ + E  + +  +  + D+I
Sbjct: 131 NFRMMTDETEILLMKEEIWTQLRNQQYEANDE---AFFRLTENFSSDRSDEGVGDLI 184


>gi|160881547|ref|YP_001560515.1| recombination helicase AddA [Clostridium phytofermentans ISDg]
 gi|251764520|sp|A9KTE6|ADDA_CLOPH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|160430213|gb|ABX43776.1| recombination helicase AddA [Clostridium phytofermentans ISDg]
          Length = 1377

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 52/206 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R++  + +   P     LL +T TKAAA EM  R+          
Sbjct: 23  VSAAAGSGKTAVLVERIINRITSENSPINIDQLLIVTFTKAAAGEMRERI---------- 72

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                 A I K   ++P+   + K   LL +        ++ TI +FC ++         
Sbjct: 73  -----GAAIEKKVLEQPDNVHLQKQLTLLYSA-------QITTIDSFCLSV--------- 111

Query: 153 ITSHFAIADEEQSKKLIEEA-----KKSTLASIMLDNNEELKKAFYEILEI----SNDED 203
           I +HF   D + S ++ EEA     K   LA+++ +  EE  + F E +E      +DE 
Sbjct: 112 IRNHFHTIDLDPSFRIAEEAELMLLKSDVLATLLEEKYEEGAEDFLEFVECYSASKSDEP 171

Query: 204 IETLISDIISNRTALKLIFFFFSYLW 229
           IE  I         LKL  F  SY +
Sbjct: 172 IENFI---------LKLYQFSQSYPY 188


>gi|89098018|ref|ZP_01170904.1| AddA [Bacillus sp. NRRL B-14911]
 gi|89087181|gb|EAR66296.1| AddA [Bacillus sp. NRRL B-14911]
          Length = 1254

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 30/181 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++  +++   P     LL +T T A+AAEM HR+ E        
Sbjct: 32  VAAAAGSGKTAVLVERIINKIVSREEPVNVDELLVVTFTNASAAEMRHRIGE-------- 83

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + K   + P  + + K   LL           + T+H+FC  +++++    +
Sbjct: 84  -------ALEKAINRDPQSAHLRKQLSLL-------SRASISTLHSFCLEVIRKYYYLID 129

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEILEISNDEDIETLISDI 211
           I   F IADE + + L +E  +         +NNE+    FY +++    +  +T + DI
Sbjct: 130 IDPGFRIADETEGQLLRDEVLEELFEEEYGKENNED----FYRLVDAFTSDRSDTALQDI 185

Query: 212 I 212
           I
Sbjct: 186 I 186


>gi|257875815|ref|ZP_05655468.1| UvrD/REP helicase [Enterococcus casseliflavus EC20]
 gi|257809981|gb|EEV38801.1| UvrD/REP helicase [Enterococcus casseliflavus EC20]
          Length = 1225

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 22/177 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L A     +LL +T T+AAA EM  R+             
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAAREMKERIQ------------ 77

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                   +Q     +SD  K +H +  +   P    + T+HAFC  ++++F    ++  
Sbjct: 78  ------VALQQAINQESDEQKRQHFVRQLQLLPTA-NISTLHAFCLTVIRRFYYLIDLDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +F +  +E    L++E   + L     + N+E   AF+ + E  + +  +  + D+I
Sbjct: 131 NFRMMTDETEILLMKEEIWTQLRDQQYEANDE---AFFRLTENFSSDRSDEGVGDLI 184


>gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans]
 gi|133737857|emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB
           [Herminiimonas arsenicoxydans]
          Length = 1096

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 5/192 (2%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A DP RS  V A AGSGKT +LV RVLRLLLA   P+ +L +T T+ AA EM  R++++
Sbjct: 29  IACDPARSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAILAITFTRKAAQEMRERLMQL 88

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNK--SDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +   + L  E     + + +G   ++  + +  AR L   +L +P  L + T H++   +
Sbjct: 89  LHELT-LKPEADVLTLLRERGVADHELLALLPLARGLYERVLRSPQALSIDTFHSWFARL 147

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +Q  PL + +   +A+   E + +L  +A    + ++   +N+E+K A   +     D +
Sbjct: 148 VQIAPLASGVPHGYALT--ESTGELSSDAYSRFMQTVNEADNQEVKDALIALYAQVGDSN 205

Query: 204 IETLISDIISNR 215
              L+      R
Sbjct: 206 ARNLLDAFAGKR 217


>gi|94311069|ref|YP_584279.1| DNA helicase/exodeoxyribonuclease V subunit A [Cupriavidus
           metallidurans CH34]
 gi|93354921|gb|ABF09010.1| UvrD/REP helicase [Cupriavidus metallidurans CH34]
          Length = 1187

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 5/191 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  V A AGSGKT +LV R++RLLLA A P  +L +T T+ AA EM  R+LE++
Sbjct: 23  ACDPGRSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRERLLEVL 82

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARH--LLITILETPGGLKVQTIHAFCEAIM 144
           +  +  +DE +  ++ +++G  P+ +  +  R   L   +L +PG + + T H +   ++
Sbjct: 83  SQLAGGTDEAVLTQL-EMRGLSPDAARAALPRARTLHAQVLASPGRMAIDTFHGWFGTLL 141

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           +  PL + I    ++   E + ++  EA      ++      +L++A+  +++   D   
Sbjct: 142 RGAPLSSGIVPGASL--REDALRMKREAWAPFWRALAQPQYADLREAYEALVDAIGDFQA 199

Query: 205 ETLISDIISNR 215
             L+  +   R
Sbjct: 200 RGLLDRMFHAR 210


>gi|325570415|ref|ZP_08146192.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156625|gb|EGC68802.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 1225

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 22/177 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L A     +LL +T T+AAA EM  R+             
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAAREMKERIQ------------ 77

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                   +Q     +SD  K +H +  +   P    + T+HAFC  ++++F    ++  
Sbjct: 78  ------AALQQAINQESDEQKRQHFVRQLQLLPTA-NISTLHAFCLTVIRRFYYLIDLDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +F +  +E    L++E   + L     + N+E   AF+ + E  + +  +  + D+I
Sbjct: 131 NFRMMTDETEILLMKEEIWTQLRDQQYEANDE---AFFRLTENFSSDRSDEGVGDLI 184


>gi|154485117|ref|ZP_02027565.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC
           27560]
 gi|149734070|gb|EDM50189.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC
           27560]
          Length = 1220

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 25/148 (16%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAA 76
           T  +Q +     R+  VSA AGSGKT +LV+R+++++    +P+    LL +T T+AAA+
Sbjct: 4   TDKQQKVIDTRDRNILVSAAAGSGKTAVLVERIIKMITDEENPTDVNQLLVVTFTRAAAS 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ E                + K++   PN  ++ K   L+           + TI
Sbjct: 64  EMKERIREA---------------LEKMEEDNPNDLNVQKQLSLI-------HNANISTI 101

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164
            +FC  +++    + ++  +F IADE +
Sbjct: 102 DSFCARVVKDNFDKIDLDPNFRIADENE 129


>gi|284048669|ref|YP_003399008.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731]
 gi|283952890|gb|ADB47693.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731]
          Length = 1116

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 28/165 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + S T  +Q   S   R+  VSA AGSGKT +LV+R L++L    A    +L +T T+ A
Sbjct: 1   MASFTPQQQEAISTLDRNVSVSAGAGSGKTRVLVERFLKILQERKATAQEILAITFTRKA 60

Query: 75  AAEMSHRV----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           A EM  RV    L+ + A +   ++    E  ++  + P                     
Sbjct: 61  AREMRERVQKGILDRLGAAAEPEEKAYWQEQLQLADRAP--------------------- 99

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + TI +FC  ++++ P+EA +  +FA+ +E Q +   EE  ++
Sbjct: 100 --ITTIDSFCSQVLRENPVEAGLDPNFAVKEEYQIRAFREETAQA 142


>gi|304385834|ref|ZP_07368178.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           acidilactici DSM 20284]
 gi|304328338|gb|EFL95560.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           acidilactici DSM 20284]
          Length = 1238

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 21/153 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q        +  VSA+AGSGKT +LV+RV++ ++       LL +T T+AAAAEM 
Sbjct: 7   TPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAAAEMK 66

Query: 80  HRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            R+   I+   S + D  L   ++   GK  N +                    + T+HA
Sbjct: 67  ERIRAAIMKKISEVKDADLQNHLSLQLGKLNNAN--------------------ISTLHA 106

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           FC A+++ +    ++   F I D  +S+ L E+
Sbjct: 107 FCMAVIRNYYYVIDLDPAFRIMDPTESELLKEQ 139


>gi|270289913|ref|ZP_06196139.1| recombination helicase AddA [Pediococcus acidilactici 7_4]
 gi|270281450|gb|EFA27282.1| recombination helicase AddA [Pediococcus acidilactici 7_4]
          Length = 1238

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 21/153 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q        +  VSA+AGSGKT +LV+RV++ ++       LL +T T+AAAAEM 
Sbjct: 7   TPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAAAEMK 66

Query: 80  HRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            R+   I+   S + D  L   ++   GK  N +                    + T+HA
Sbjct: 67  ERIRAAIMKKISEVKDADLQNHLSLQLGKLNNAN--------------------ISTLHA 106

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           FC A+++ +    ++   F I D  +S+ L E+
Sbjct: 107 FCMAVIRNYYYVIDLDPAFRIMDPTESELLKEQ 139


>gi|331092164|ref|ZP_08340994.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401936|gb|EGG81510.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1197

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 29/184 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ T  ++ + S   R+  VSA AGSGKT +LV+R++ +L  +  P     LL +T T+A
Sbjct: 3   VNWTPEQEKVISLRNRNILVSAAAGSGKTAVLVERIITMLTKDEPPINVDELLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+EM  R+L               + I K   + P+   + K   L+ + +       +
Sbjct: 63  AASEMKERIL---------------SAIEKKLEENPDNVHLQKQSTLIHSAM-------I 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC ++++++    ++   F I +E + K L    +K  L  ++ +  E+  K F 
Sbjct: 101 TTIHSFCLSVIREYFHTIDLDPSFRIGEEGELKLL----QKEVLQELLEEQYEKADKKFL 156

Query: 194 EILE 197
             +E
Sbjct: 157 SFVE 160


>gi|313123657|ref|YP_004033916.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280220|gb|ADQ60939.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 1227

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 20/156 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA+AGSGKT +LV+RV+R ++ +    + LL +T T+AAA+EM  R+ +          
Sbjct: 22  VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   ++Q +   ++D S+A  L   + E    + + TI +FC  ++++F    +I 
Sbjct: 72  --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             F+I  +    +L++E     + +  L N  + KK
Sbjct: 123 PDFSILTDATQIELLKERALRDVENDYLQNENQAKK 158


>gi|254457061|ref|ZP_05070489.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
 gi|207085853|gb|EDZ63137.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
          Length = 905

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 14/163 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A+AGSGKT +LV R L LL   A P+ +L LT T  AA EM  R++  +    H  +   
Sbjct: 10  ASAGSGKTFMLVVRYLSLLFKGATPNKILALTFTNKAAFEMQERIVLTLEELEHRGE--- 66

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
             EI K+ G    +  + + + +L   L +    K+ TI  F   I+++F L A++   F
Sbjct: 67  LDEIVKVTG-FSREFLLHERKRILDEFLNSNS--KIMTIDKFFAQILRKFSLYASLMPDF 123

Query: 158 AIADEEQSKKLIEE--------AKKSTLASIMLDNNEELKKAF 192
                +   KL+           KK+TL ++ L + + L   F
Sbjct: 124 TTMSSQHELKLLSRFLKEVSVAGKKNTLITLSLQSKKRLGDIF 166


>gi|189218845|ref|YP_001939486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Methylacidiphilum
           infernorum V4]
 gi|189185703|gb|ACD82888.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Methylacidiphilum
           infernorum V4]
          Length = 1055

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 8/150 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           TR   V A+AG+GKTH LV+R L LLL    P +LL +T T+ A+ E+  R+      +S
Sbjct: 9   TRRLVVVASAGAGKTHQLVERALDLLLEGVAPHSLLIITFTRKASQEIVDRI------FS 62

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            L+  +L+++  K+          S+A   L T++E    L+  TI +F   +++  P +
Sbjct: 63  TLAQRVLASK-EKVDPSPEESLLKSRAYRCLQTLIEDLPFLRFGTIDSFLYHLLRYIPPD 121

Query: 151 ANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179
              T + F++ D++  K L +E  +  L +
Sbjct: 122 KKPTFAPFSLLDDKGKKSLQQEIVRRILTA 151


>gi|256958610|ref|ZP_05562781.1| UvrD/REP helicase [Enterococcus faecalis DS5]
 gi|256949106|gb|EEU65738.1| UvrD/REP helicase [Enterococcus faecalis DS5]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|256762121|ref|ZP_05502701.1| exonuclease RexA [Enterococcus faecalis T3]
 gi|257086468|ref|ZP_05580829.1| UvrD/REP helicase [Enterococcus faecalis D6]
 gi|256683372|gb|EEU23067.1| exonuclease RexA [Enterococcus faecalis T3]
 gi|256994498|gb|EEU81800.1| UvrD/REP helicase [Enterococcus faecalis D6]
 gi|315028070|gb|EFT40002.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2137]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|329576396|gb|EGG57909.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1467]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|257418942|ref|ZP_05595936.1| UvrD/REP helicase [Enterococcus faecalis T11]
 gi|257160770|gb|EEU90730.1| UvrD/REP helicase [Enterococcus faecalis T11]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|307268773|ref|ZP_07550141.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248]
 gi|306514901|gb|EFM83448.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|301301162|ref|ZP_07207319.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851291|gb|EFK79018.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1248

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 19/152 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T ++Q    D  ++  V+A+AGSGKT +LV+RV+  +        LL +T T+AAA EM 
Sbjct: 8   TPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAAAKEMK 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+         L  E+ +A+           S+  K R+L  T L       + T+HAF
Sbjct: 68  ERI------QIALRKELSTAD-----------SEEEKRRYL--TQLSKLNVANISTLHAF 108

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           C  I++Q+    N+   F +  E+    L++E
Sbjct: 109 CLQIIKQYYYVINLDPMFRMLTEDTEVALLQE 140


>gi|163790443|ref|ZP_02184874.1| exonuclease RexA [Carnobacterium sp. AT7]
 gi|159874347|gb|EDP68420.1| exonuclease RexA [Carnobacterium sp. AT7]
          Length = 1267

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 23/139 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LVQRV+  + A  +   +L +T+T+AAA EM  R+             
Sbjct: 31  VSASAGSGKTTVLVQRVIEKIKAGTNVDEMLIVTYTEAAAKEMKARIQ------------ 78

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                   IQ    ++SDM   RHL   +T++       + T+HAFC  +++++    N+
Sbjct: 79  ------VAIQESVTSESDMELKRHLTRQVTLINQAS---ISTLHAFCLQVIRRYYYLINL 129

Query: 154 TSHFAIADEEQSKKLIEEA 172
              F +  +E    L++E+
Sbjct: 130 DPIFRLLTDETEILLLKES 148


>gi|257078036|ref|ZP_05572397.1| UvrD/REP helicase [Enterococcus faecalis JH1]
 gi|294780984|ref|ZP_06746336.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1]
 gi|256986066|gb|EEU73368.1| UvrD/REP helicase [Enterococcus faecalis JH1]
 gi|294451930|gb|EFG20380.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1]
 gi|315031591|gb|EFT43523.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0017]
 gi|315034967|gb|EFT46899.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0027]
 gi|323480352|gb|ADX79791.1| recombination helicase AddA [Enterococcus faecalis 62]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|251778187|ref|ZP_04821107.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082502|gb|EES48392.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 1244

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 28/155 (18%)

Query: 17  ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +S TK +E+ L++  TR     V+A AGSGKT +LV+R+++++    +P     LL +T 
Sbjct: 1   MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+   I+                   KK +++ MSK     +T+L     
Sbjct: 61  TSAAAAEMRERIANAIS-------------------KKLDETPMSKNLQKQLTLLNRSN- 100

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             + TIH+FC  +++    + ++   F I D+ + 
Sbjct: 101 --IMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEG 133


>gi|90962576|ref|YP_536492.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118]
 gi|122448460|sp|Q1WRS0|ADDA_LACS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|90821770|gb|ABE00409.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118]
          Length = 1248

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 19/152 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T ++Q    D  ++  V+A+AGSGKT +LV+RV+  +        LL +T T+AAA EM 
Sbjct: 8   TPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAAAKEMK 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+         L  E+ +A+           S+  K R+L  T L       + T+HAF
Sbjct: 68  ERI------QIALRKELSTAD-----------SEEEKRRYL--TQLSKLNVANISTLHAF 108

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           C  I++Q+    N+   F +  E+    L++E
Sbjct: 109 CLQIIKQYYYVINLDPMFRMLTEDTEVALLQE 140


>gi|307288582|ref|ZP_07568566.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109]
 gi|306500489|gb|EFM69822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|300215188|gb|ADJ79604.1| ATP-dependent helicase/nuclease subunit A (ATP-dependent
           helicase/nuclease addA) [Lactobacillus salivarius CECT
           5713]
          Length = 1248

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 19/152 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T ++Q    D  ++  V+A+AGSGKT +LV+RV+  +        LL +T T+AAA EM 
Sbjct: 8   TPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAAAKEMK 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+         L  E+ +A+           S+  K R+L  T L       + T+HAF
Sbjct: 68  ERI------QIALRKELSTAD-----------SEEEKRRYL--TQLSKLNVANISTLHAF 108

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           C  I++Q+    N+   F +  E+    L++E
Sbjct: 109 CLQIIKQYYYVINLDPMFRMLTEDTEVALLQE 140


>gi|256618697|ref|ZP_05475543.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200]
 gi|257089525|ref|ZP_05583886.1| exonuclease rexA [Enterococcus faecalis CH188]
 gi|256598224|gb|EEU17400.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200]
 gi|256998337|gb|EEU84857.1| exonuclease rexA [Enterococcus faecalis CH188]
 gi|315577474|gb|EFU89665.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0630]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|257415727|ref|ZP_05592721.1| UvrD/REP helicase [Enterococcus faecalis AR01/DG]
 gi|257157555|gb|EEU87515.1| UvrD/REP helicase [Enterococcus faecalis ARO1/DG]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|227891362|ref|ZP_04009167.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           salivarius ATCC 11741]
 gi|227866940|gb|EEJ74361.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           salivarius ATCC 11741]
          Length = 1253

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 19/152 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T ++Q    D  ++  V+A+AGSGKT +LV+RV+  +        LL +T T+AAA EM 
Sbjct: 13  TPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAAAKEMK 72

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+         L  E+ +A+           S+  K R+L  T L       + T+HAF
Sbjct: 73  ERI------QIALRKELSTAD-----------SEEEKRRYL--TQLSKLNVANISTLHAF 113

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           C  I++Q+    N+   F +  E+    L++E
Sbjct: 114 CLQIIKQYYYVINLDPMFRMLTEDTEVALLQE 145


>gi|312899588|ref|ZP_07758914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470]
 gi|311293267|gb|EFQ71823.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|255976207|ref|ZP_05426793.1| exonuclease RexA [Enterococcus faecalis T2]
 gi|307278851|ref|ZP_07559914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860]
 gi|255969079|gb|EET99701.1| exonuclease RexA [Enterococcus faecalis T2]
 gi|306504522|gb|EFM73729.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860]
          Length = 1264

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|328552685|gb|AEB23177.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
           amyloliquefaciens TA208]
          Length = 1234

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 33/187 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R++R + A   P     LL +T T A+AAEM HR+ E    
Sbjct: 24  RDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASAAEMKHRIAE---- 79

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K   K P    + +   LL           + T+H+FC  +++++ 
Sbjct: 80  -----------ALEKELAKNPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYY 121

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F +AD+ + + L +E     L  +  D   +  +AF+E+++      +D D+
Sbjct: 122 YMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFFELVDRYTTDRHDLDL 177

Query: 205 ETLISDI 211
           + L+  +
Sbjct: 178 QDLVKRV 184


>gi|315165524|gb|EFU09541.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1302]
          Length = 1271

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 31  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + D  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 86  -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 184

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 185 --DDGLTN-----LIFSFYEF 198


>gi|254520364|ref|ZP_05132420.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA]
 gi|226914113|gb|EEH99314.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA]
          Length = 1251

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 28/155 (18%)

Query: 17  ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +S TK +E  L +  TR     V+A AGSGKT +LV+R++R++    +P     LL +T 
Sbjct: 1   MSDTKWTEDQLKAITTRGCNLLVAAAAGSGKTAVLVERIIRIITNENNPVDIDRLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+               +A I++     PN    SK     +T+L     
Sbjct: 61  TSAAAAEMRERI---------------AAAISRSLEANPN----SKVLQRQLTLLSRAN- 100

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             + T+H+FC  +++ +    ++   F IADE ++
Sbjct: 101 --ITTMHSFCLDVIKNYYHVIDLDPTFRIADETEN 133


>gi|160934431|ref|ZP_02081818.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753]
 gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753]
          Length = 1179

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 25/164 (15%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T+S++   S    S  VSA AGSGKT +LVQRV+  L     P     LL +T T AAAA
Sbjct: 7   TESQRWAISARNGSLLVSAAAGSGKTAVLVQRVIERLTDPERPCDADRLLIVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+               SA I ++    P  + + + + LL           + TI
Sbjct: 67  EMKERI---------------SAAIGELLQADPANAQLQRQQILL-------NRAHISTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           H+FC  ++++   + +I+  F I+D  +   L +EA    +  +
Sbjct: 105 HSFCNELVRENFYKLDISPDFRISDSAEMTLLRQEAMDEVMEEL 148


>gi|153812830|ref|ZP_01965498.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174]
 gi|149831042|gb|EDM86131.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174]
          Length = 1233

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 25/166 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ T+ +Q + S   R+  VSA AGSGKT +LVQR+L  ++    P     LL +T T+A
Sbjct: 3   VTWTEEQQKVISLRDRNILVSAAAGSGKTAVLVQRILSKIMDTERPVDIDRLLIMTFTRA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+               SA I +I    P+   + +   L+          ++
Sbjct: 63  AAGEMKERI---------------SAAIDQILYDNPDNEHLQRQASLI-------HNAQI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            TI  FC  I++ +    ++   +  A+E + K L E+  K  L +
Sbjct: 101 TTIDGFCAYIIRNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEA 146


>gi|118602136|ref|YP_903351.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567075|gb|ABL01880.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 1053

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 28/173 (16%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           QT+  Q  A D ++S  V A AGSGKT +L QR L+LL  +A P +++ +T TK A +E+
Sbjct: 4   QTQRRQ--ALDVSQSFIVQAPAGSGKTELLTQRYLKLLSVSASPESVIAMTFTKKAVSEL 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL------- 131
           + RV+E                +   QG +P +S       L + +LE    L       
Sbjct: 62  TTRVIE---------------SLKLAQGNRPKESYKQTTYDLALKVLEKSKTLDWQLLNM 106

Query: 132 ----KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
               K+ TI      I  ++P +  +     IA       +  +A K TL +I
Sbjct: 107 YERFKILTIDGLSGLIASRYPSKNQLVPKQIIAQNCVRNDIYLKAAKQTLLAI 159


>gi|167751208|ref|ZP_02423335.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702]
 gi|167655715|gb|EDR99844.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702]
          Length = 1235

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 23/179 (12%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           A VSA AGSGKT +L QRV+RL+     N  PS ++ +T T+ AA E+  R+  ++    
Sbjct: 18  AIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTEKAANELKARLDALMR--Q 75

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPL 149
            +S+ + SA++  ++ +   +  + KAR              + TI +FC +++++   L
Sbjct: 76  RISEAVSSADVRFLRNQ---RMKLRKAR--------------ISTISSFCFSLLRENIDL 118

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
             +I++ F++ DE +SK L E+     L     + ++  +    E     +D  +  +I
Sbjct: 119 VTDISAGFSLIDETRSKALKEDILSDVLEDFYANGDKADRDVIVENYVAKDDRRLRDII 177


>gi|253827592|ref|ZP_04870477.1| putative helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510998|gb|EES89657.1| putative helicase [Helicobacter canadensis MIT 98-5491]
          Length = 919

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 8/131 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           ++A+AGSGKT+ LV R L LL   A PS +L LT TK AA EM  R+++ I       ++
Sbjct: 8   LNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIVKSIQEIYQRKND 67

Query: 96  ---ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
              I   E   I   +  +  ++K  +  +        LK+ TI +F + I++ F     
Sbjct: 68  REYIKKLEFISINDLEGIEQKITKIYYEFLR-----EDLKITTIDSFFQRILKSFCWYVG 122

Query: 153 ITSHFAIADEE 163
           + ++F I +E+
Sbjct: 123 VENNFEIQNED 133


>gi|163857867|ref|YP_001632165.1| putative nuclease/helicase [Bordetella petrii DSM 12804]
 gi|163261595|emb|CAP43897.1| putative nuclease/helicase [Bordetella petrii]
          Length = 1152

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 10/142 (7%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP  S  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  RVL   
Sbjct: 17  ALDPASSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVL--- 73

Query: 87  TAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                L D       T+  G++     ++ + +   L   +L+ P  L ++TI +FC  +
Sbjct: 74  ---GKLRDGSGPMPATE-HGQRSWQLARAALERNDALGWKLLQHPARLSIRTIDSFCAGL 129

Query: 144 MQQFPLEANITSHFAIADEEQS 165
           ++  P  + +     IAD+ Q+
Sbjct: 130 VRGMPWLSELGGMPDIADDAQA 151


>gi|27467582|ref|NP_764219.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC
           12228]
 gi|81842983|sp|Q8CPT9|ADDA_STAES RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|27315126|gb|AAO04261.1|AE016746_51 ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC
           12228]
          Length = 1224

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A EM HRV            
Sbjct: 34  VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 82  ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 131

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            HF  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 132 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 181

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 182 -RSIIKQLYFF 191


>gi|218510905|ref|ZP_03508783.1| UvrD/REP helicase [Rhizobium etli Brasil 5]
          Length = 318

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 17/139 (12%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT--AW 89
           RS  V A AGSGKT ++  R+  +L     P  +  +T T+ AA+E+  RV + +T  A 
Sbjct: 23  RSILVEAGAGSGKTAVMAGRIAVMLAQGVAPRAIAAVTFTELAASELLSRVRDFVTDLAA 82

Query: 90  SHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            H++ E+   L   +++ Q            R  L+        +   TIH FC+ +++ 
Sbjct: 83  GHIAPELRVGLPDGLSQAQ------------RDNLVVASAAIDEITCSTIHGFCQRLIKP 130

Query: 147 FPLEANITSHFAIADEEQS 165
           +P EA+I     + D  QS
Sbjct: 131 YPAEADIDPGATVMDRNQS 149


>gi|329730541|gb|EGG66929.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus
           epidermidis VCU144]
          Length = 1218

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            HF  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 176 -RSIIKQLYFF 185


>gi|57866488|ref|YP_188146.1| exonuclease RexA [Staphylococcus epidermidis RP62A]
 gi|81675092|sp|Q5HQJ4|ADDA_STAEQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|57637146|gb|AAW53934.1| exonuclease RexA [Staphylococcus epidermidis RP62A]
          Length = 1218

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            HF  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 176 -RSIIKQLYFF 185


>gi|330837379|ref|YP_004412020.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329749282|gb|AEC02638.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 1218

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 29/171 (16%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
           Q  A D   +  VSA AGSGKT +L  R +RLL+   AH   +L LT T+ AAAEM  R+
Sbjct: 33  QRRAVDCDSNCVVSAGAGSGKTTVLTYRFIRLLIEGKAHADQILTLTFTRKAAAEMHERI 92

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +++  S   D ++++E+ +     P                      ++ T+ +FC A
Sbjct: 93  HALVS--SLRDDPLMASELARF----PQA--------------------QISTLDSFCSA 126

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           I++   +   IT  F+I D+  ++        S L +   D    L   FY
Sbjct: 127 IVRSDCIRYGITGDFSIDDDATTR--FASVVASRLLADAQDEGARLLSVFY 175


>gi|182417613|ref|ZP_02948934.1| recombination helicase AddA [Clostridium butyricum 5521]
 gi|237669499|ref|ZP_04529479.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378532|gb|EDT76062.1| recombination helicase AddA [Clostridium butyricum 5521]
 gi|237654943|gb|EEP52503.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 1252

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 28/155 (18%)

Query: 17  ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           + +TK +++ L++  TR+    V+A AGSGKT +LV+R++R++    +P     LL +T 
Sbjct: 1   MGETKWTDEQLSAIKTRNCNLLVAAAAGSGKTAVLVERIIRIITNKDNPVDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+               +A I+K   K+P   ++ K   LL         
Sbjct: 61  TNAAAAEMRERI---------------AAAISKALDKEPTSKNLQKQLTLL-------NR 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             + T+H+FC  +++    + ++   F I D+ + 
Sbjct: 99  ANITTMHSFCLDVIKNNFHKIDLDPSFRIGDQTEG 133


>gi|78776291|ref|YP_392606.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
 gi|78496831|gb|ABB43371.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
          Length = 903

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 18/165 (10%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS--DE 95
           A+AGSGKT +LV R L LL   A  S +L LT T  AA+EM  R++  +    H    DE
Sbjct: 10  ASAGSGKTFMLVVRYLSLLFMGAKASRILALTFTNKAASEMQERIIATLEELEHRGELDE 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           IL      I+    N+      + +L   L +    K+ TI +F   I+++F L A++  
Sbjct: 70  ILRVTGLSIEYLLENR------QRVLDEFLNSHT--KIMTIDSFFTKILRKFSLYASLMP 121

Query: 156 HFAIADEEQSKKLIEE--------AKKSTLASIMLDNNEELKKAF 192
            F+    +   KL+           +K  L S+ L +N+ L   F
Sbjct: 122 DFSTFSSQHELKLLSRFLKEVSITNQKERLISLWLSSNKRLSDIF 166


>gi|282875534|ref|ZP_06284405.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135]
 gi|281295561|gb|EFA88084.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135]
          Length = 1218

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            HF  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 176 -RSIIKQLYFF 185


>gi|251810340|ref|ZP_04824813.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251806148|gb|EES58805.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 1224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A EM HRV            
Sbjct: 34  VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 82  ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 131

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            HF  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 132 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 181

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 182 -RSIIKQLYFF 191


>gi|291165683|gb|EFE27731.1| ATP-dependent nuclease subunit A [Filifactor alocis ATCC 35896]
          Length = 1224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 26/182 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +S T  +  +  +  ++  VSA AGSGKT +LV+R+LR++       + +L +T T AAA
Sbjct: 10  VSYTNEQNAVIYEKNKNILVSAAAGSGKTAVLVERILRIVEEERVDINRMLIVTFTNAAA 69

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+               S    K  G+K +  D +  +  +I I E      + T
Sbjct: 70  GEMRERI---------------SKAFAKRLGQKGH--DTAFLQDQMIKISEA----SIST 108

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++QF   A+I+  FA+A E     L    K  +L  ++ ++ E   + F+++
Sbjct: 109 LHSFCIDVLRQFFHAADISPSFAMATEANVSVL----KAKSLEEVLEESYERGDETFFQL 164

Query: 196 LE 197
           ++
Sbjct: 165 VD 166


>gi|91776104|ref|YP_545860.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus
           flagellatus KT]
 gi|91710091|gb|ABE50019.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus
           flagellatus KT]
          Length = 1129

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 10/182 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT +L QR LRLL   + P  ++ +T T  AAAEM  R+L+ +   +  S  
Sbjct: 28  VEAPAGAGKTELLTQRFLRLLTTVSAPEQIIAITFTNKAAAEMRARILDSLLMAASGSP- 86

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               +  K Q  +  K  +  A  L   +L+ P  L++ TI +    + +Q PL +   S
Sbjct: 87  --PPQAHKQQTFRLGKEALRHADSLGWELLDHPSRLRIFTIDSLSGHLSRQMPLLSRFGS 144

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISND-EDIETLISDIIS 213
             A++++  +   +  A + TLA   L + E + +A    L  + ND + +  L+ D++ 
Sbjct: 145 QPAVSEDASAHYRL--AAERTLA---LVDEESMGEAVRLALRYVDNDVQKLTGLLVDMLG 199

Query: 214 NR 215
            R
Sbjct: 200 KR 201


>gi|242242257|ref|ZP_04796702.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           W23144]
 gi|242234273|gb|EES36585.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           W23144]
          Length = 1218

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---DIRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            HF  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 176 -RSIIKQLYFF 185


>gi|91215425|ref|ZP_01252396.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755]
 gi|91186377|gb|EAS72749.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755]
          Length = 1045

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 27/167 (16%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSH-- 91
           +A+AGSGKT  L +R L LLL++   S+   +L +T T  A  EM  R+LE + ++S   
Sbjct: 11  NASAGSGKTFKLAERYLNLLLSSPQNSSFQNILAITFTNKAVGEMKSRILEYLVSFSEGK 70

Query: 92  --LSDEIL------SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             L D+ +      S  +TK Q +K       K++ +L  IL      +V TI AF   I
Sbjct: 71  TSLEDDPMLLLIHKSTGLTKEQIQK-------KSKRVLEAILNNYAAFEVSTIDAFTHRI 123

Query: 144 MQQFPLEANITSHFAI-ADEEQ-----SKKLIEEA-KKSTLASIMLD 183
           ++ F  +  ++ +F I  D +Q      ++++E+A K+  L  +++D
Sbjct: 124 IRTFAKDLGLSMNFDIEMDTKQVLELAVERVVEKAGKEEELTDVLID 170


>gi|255590468|ref|XP_002535279.1| conserved hypothetical protein [Ricinus communis]
 gi|223523578|gb|EEF27105.1| conserved hypothetical protein [Ricinus communis]
          Length = 436

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 26/190 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT +L QR L+LL     P  ++ +T T  AAAEM  RVL+       L D 
Sbjct: 25  VEAPAGAGKTELLTQRYLKLLAVVNEPEEIVAITFTNKAAAEMRSRVLQ------SLQD- 77

Query: 96  ILSAEITKIQGKKPNKSD--------MSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             +A+   I   KP+K          ++++  L   +L  PG L++ TI +    + +Q 
Sbjct: 78  --AADAIPID--KPHKQTTRELALHALARSAELGWDLLAQPGRLRINTIDSLSSNLARQM 133

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE-- 205
           PL +   +  A++++     L  EA + TLA  ML+ +E    A  E L   +++ +   
Sbjct: 134 PLMSRFGAQPAVSEDVGVHYL--EAARRTLA--MLE-DEGGNGAVTEALRYLDNDTVRLS 188

Query: 206 TLISDIISNR 215
            L++++++ R
Sbjct: 189 NLLAEMLARR 198


>gi|86131067|ref|ZP_01049666.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
 gi|85818478|gb|EAQ39638.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
          Length = 1045

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 29/165 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++A+AGSGKT+ LV++ +  LL +  P+    LL +T T  A AEM +RVLE + A    
Sbjct: 10  LNASAGSGKTYSLVKQYITTLLKSKDPNKFRHLLAITFTNKAVAEMKNRVLETLKAIGDY 69

Query: 93  SDEILSAEITKIQGKKPNKSD-------------MSKARHLLITILETPGGLKVQTIHAF 139
                       QG KP+  D             + K++ +L  IL       + TI   
Sbjct: 70  K-----------QGDKPDMLDDLASASNLPVDEVVHKSKEILNRILHNYAAFDIVTIDTL 118

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
              I++ F  + NI+S F ++ ++  K L  +A  + +A + +D+
Sbjct: 119 THRIIRTFAKDLNISSSFEVSLDQ--KTLSAQAVDALVAKVGVDD 161


>gi|212696888|ref|ZP_03305016.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676178|gb|EEB35785.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1021

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 23/132 (17%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
            ++  VSA AGSGKT +LV RV+ L++    P   ++ +T T  A+ EM  R+ E ++  
Sbjct: 18  NKNIIVSAAAGSGKTRVLVDRVVSLMIEEKIPIKNMIIVTFTNKASVEMKDRIREKLSEL 77

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FP 148
             L DE + +   K Q K  N +                    ++T+H+FC  ++++ F 
Sbjct: 78  --LDDEKIDSSFVKKQIKAINDA-------------------FIKTLHSFCADMLRENFY 116

Query: 149 LEANITSHFAIA 160
           L  N++  F IA
Sbjct: 117 LSDNLSPSFKIA 128


>gi|238854633|ref|ZP_04644963.1| recombination helicase AddA [Lactobacillus jensenii 269-3]
 gi|260664424|ref|ZP_05865276.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US]
 gi|282932976|ref|ZP_06338373.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
 gi|238832423|gb|EEQ24730.1| recombination helicase AddA [Lactobacillus jensenii 269-3]
 gi|260561489|gb|EEX27461.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US]
 gi|281303011|gb|EFA95216.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
          Length = 1186

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 35/185 (18%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++ TK ++   +   +   VSA+AGSGKT +L +RV++L+        LL +T TKAAA
Sbjct: 1   MVNYTKEQEAAINTREKDILVSASAGSGKTMVLAERVIKLIKDGTSLDNLLVITFTKAAA 60

Query: 76  AEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            EM  R+  ++           L  E+L AE+  I                         
Sbjct: 61  NEMKERIKRVLNEEIAQNNSRELKRELLRAEVANI------------------------- 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                TI +FC  ++ +F     +   F++  +E    L++E     L      N +   
Sbjct: 96  ----STIDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFSNQDNPY 151

Query: 190 KAFYE 194
           + FY+
Sbjct: 152 RIFYD 156


>gi|313472179|ref|ZP_07812671.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153]
 gi|313449090|gb|EEQ68552.2| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153]
          Length = 1173

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 35/185 (18%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++ TK ++   +   +   VSA+AGSGKT +L +RV++L+        LL +T TKAAA
Sbjct: 1   MVNYTKEQEAAINTREKDILVSASAGSGKTMVLAERVIKLIKDGTSLDNLLVITFTKAAA 60

Query: 76  AEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            EM  R+  ++           L  E+L AE+  I                         
Sbjct: 61  NEMKERIKRVLNEEIAQNNSRELKRELLRAEVANI------------------------- 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                TI +FC  ++ +F     +   F++  +E    L++E     L      N +   
Sbjct: 96  ----STIDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFSNQDNPY 151

Query: 190 KAFYE 194
           + FY+
Sbjct: 152 RIFYD 156


>gi|313896167|ref|ZP_07829720.1| ATP-dependent helicase/nuclease subunit A family protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974966|gb|EFR40428.1| ATP-dependent helicase/nuclease subunit A family protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 270

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 24/136 (17%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ ++         +L LT TKAAAAEM  R+           +
Sbjct: 24  VAAAAGSGKTRVLVERIIAQVRSGELSLDRVLVLTFTKAAAAEMRERI-----------E 72

Query: 95  EILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
             L+AEI +I  ++   SD  +       + +L+T      G  + T H+FC+ I+Q + 
Sbjct: 73  TALNAEIDRIAEERAATSDADEEIAALERQRILLT------GADISTFHSFCQRILQTYI 126

Query: 149 LEANITSHFAIADEEQ 164
               I  ++ +A E++
Sbjct: 127 EATQIPPNYRLASEQE 142


>gi|317132410|ref|YP_004091724.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3]
 gi|315470389|gb|ADU26993.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3]
          Length = 1186

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 25/137 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+RV+  +    HP     LL +T T AAAAEM  R           
Sbjct: 23  VSAAAGSGKTAVLVERVVGRMTDPNHPCDADRLLVVTFTNAAAAEMRAR----------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               L+A +  +  + P  +++ + + LL           + TIHAFC  +++    + +
Sbjct: 72  ----LAARLHTLAVEHPEDANLRRQQILL-------QHAHISTIHAFCLELLRAHFEKLD 120

Query: 153 ITSHFAIADEEQSKKLI 169
           I   F IADE +++ L+
Sbjct: 121 IPPDFRIADENEARVLL 137


>gi|229820063|ref|YP_002881589.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229565976|gb|ACQ79827.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1110

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 19/164 (11%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE 84
           +A+D + S +V A AGSGKT  LV+RV  L++ +  P + +  +T T+ A AE+  R   
Sbjct: 12  IATDTSSSLFVEAGAGSGKTRSLVERVGTLVMDDGVPLAQIAAITFTEKAGAELRDR--- 68

Query: 85  IITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLIT-ILETPGGLKVQTIHAFCEA 142
                       L  E  ++ +  +P       AR  L    LE   G  + T+H+F + 
Sbjct: 69  ------------LRGEFERVWRRARPGGPQEDPARSSLAERALEDLDGAAIGTLHSFAQR 116

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           I+ + P+EA +     ++DE  S    +E + S L   +LD+ E
Sbjct: 117 ILARHPVEAGLPPLIEVSDEVASGVAFDE-RWSVLQRELLDDEE 159


>gi|257869454|ref|ZP_05649107.1| UvrD/REP helicase [Enterococcus gallinarum EG2]
 gi|257803618|gb|EEV32440.1| UvrD/REP helicase [Enterococcus gallinarum EG2]
          Length = 1226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 26/179 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSD 94
           VSA+AGSGKT +LV+RV+  L A +    LL +T T+AAA EM  R+ + + TA +  S 
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKAGSQIDELLIVTFTEAAAREMKERIQVALQTAINQESQ 89

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E                    K +H +  +   P    + T+HAFC  ++++F    ++ 
Sbjct: 90  E-------------------QKRQHFVRQLQLLPTA-NISTLHAFCLTVIRRFYYLIDLD 129

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDII 212
             F +  +E    L++E   + L     + N+E   AF+ + E  ++D   ET + D+I
Sbjct: 130 PGFRMLTDETEILLLKEEIWTQLRDAHYEANDE---AFFRLTENFASDRSDET-VGDLI 184


>gi|160946300|ref|ZP_02093509.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270]
 gi|158447416|gb|EDP24411.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270]
          Length = 1261

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 25/170 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           TK ++ +      +  VSA AGSGKT +L++R++ L+L   +P   + LL +T TK AA+
Sbjct: 7   TKEQRQVIDSRNTNLLVSAAAGSGKTAVLIERIIELVLDEKNPIDINKLLVVTFTKLAAS 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV + I                K++  + N+       HL   +L   G   + TI
Sbjct: 67  EMRERVSKAIEK--------------KLEENQENE-------HLQKQLLLLSGA-DITTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            +FC+ ++  +    N+ S+  I D  +++ L +E  +     +  +N++
Sbjct: 105 DSFCKDVLISYAHLVNLDSNIKIIDPSENEVLAKEVMQELFEELYENNDD 154


>gi|325847046|ref|ZP_08169872.1| putative ATP-dependent nuclease subunit A [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481018|gb|EGC84063.1| putative ATP-dependent nuclease subunit A [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1021

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 23/127 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +LV RV+ L++    P   ++ +T T  A+ EM  R+ E ++    L D
Sbjct: 23  VSAAAGSGKTRVLVDRVVSLMIEEKIPIKNMIIVTFTNKASVEMKDRIREKLSEL--LDD 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEANI 153
           E + +   K Q K  N +                    ++T+H+FC + + + F L  N+
Sbjct: 81  EKIDSSFVKKQIKAINDA-------------------FIKTLHSFCADMLRENFYLSDNL 121

Query: 154 TSHFAIA 160
           +  F IA
Sbjct: 122 SPSFKIA 128


>gi|329737718|gb|EGG73961.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus
           epidermidis VCU028]
          Length = 1046

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            HF  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 176 -RSIIKQLYFF 185


>gi|313902120|ref|ZP_07835531.1| recombination helicase AddA [Thermaerobacter subterraneus DSM
           13965]
 gi|313467638|gb|EFR63141.1| recombination helicase AddA [Thermaerobacter subterraneus DSM
           13965]
          Length = 1488

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 25/140 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R+  VSA AGSGKT +LV+R+LR LL  A P     LL +T T+AAAAEM  R+      
Sbjct: 27  RNLLVSAAAGSGKTSVLVERILRRLLDPASPVEIDRLLVVTFTEAAAAEMKERI------ 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + +   + P  + + +   LL       G   + T+H+FC  I +Q+ 
Sbjct: 81  ---------RNRLEQALAEHPGDARLRRQLALL-------GRASISTVHSFCLRITRQYF 124

Query: 149 LEANITSHFAIADEEQSKKL 168
               +     +A E +++ L
Sbjct: 125 YRLGLDPATRVAGEHEAQLL 144


>gi|319793174|ref|YP_004154814.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315595637|gb|ADU36703.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 1086

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 11/152 (7%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHR 81
           +A DP RS  V A AG+GKT +LV R+LR LL    +   P  +L +T TK AA EM  R
Sbjct: 21  VACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGDSACEPHEILAITFTKKAAGEMRER 80

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNK--SDMSKARHLLITILETPGGLKVQTIHAF 139
           + + +  ++  S E L  ++  ++G +P    + + + + L   +LE    ++ +T HA+
Sbjct: 81  LDQWLEQFAEESPEELVKQLV-MRGVEPAAALAAVPRLKGLYRRLLEGGRPVQFRTFHAW 139

Query: 140 CEAIMQQFPL----EANITSHFAIADEEQSKK 167
              +++  PL    E  + S++ + +++   +
Sbjct: 140 FAGLLRNAPLAVLRELGLPSNYELLEDDAEAR 171


>gi|328957498|ref|YP_004374884.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4]
 gi|328673822|gb|AEB29868.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4]
          Length = 1268

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 23/139 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LVQRV+  + +  +   +L +T+T+AAA EM  R+             
Sbjct: 31  VSASAGSGKTTVLVQRVIEKIKSGTNVDEMLIVTYTEAAAKEMKARIQ------------ 78

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                   IQ    ++SDM   RHL   +T++       + T+HAFC  +++++    N+
Sbjct: 79  ------VAIQEAVTSESDMELKRHLTRQVTLIHQAS---ISTLHAFCLQVIRRYYYLINL 129

Query: 154 TSHFAIADEEQSKKLIEEA 172
              F +  +E    L++E+
Sbjct: 130 DPIFRLLTDETEILLLKES 148


>gi|78486038|ref|YP_391963.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
 gi|78364324|gb|ABB42289.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
          Length = 1182

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           P  S  V A AGSGKT +L QR L LL     P  ++ +T TK AAAEM  R+LE +   
Sbjct: 45  PQHSYIVQAPAGSGKTALLTQRFLALLSQVETPEQVVAMTFTKKAAAEMRERILEALHFG 104

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
               DE  SA I         ++ +   +     +L+ P  L+++TI +    ++QQ PL
Sbjct: 105 LTSLDE--SASIYDQNTWHLAQAALQNNQQRQWKLLDNPNRLRIRTIDSMNGYLVQQMPL 162

Query: 150 EANITSHFAIA 160
            + + +   +A
Sbjct: 163 LSRLGAQPQVA 173


>gi|315636561|ref|ZP_07891797.1| UvrD/REP helicase [Arcobacter butzleri JV22]
 gi|315479210|gb|EFU69907.1| UvrD/REP helicase [Arcobacter butzleri JV22]
          Length = 911

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 31/175 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + LLL  A P+ +L LT T  AA EMS R+ + +     L D+
Sbjct: 7   LKASAGSGKTFALTVRYICLLLLGAKPNEILTLTFTNKAANEMSERIYKTLLT---LGDD 63

Query: 96  ILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
              A +  I+ +   +K ++   +++LI    +   L + TI  F   I+++F       
Sbjct: 64  --EAYLNAIENEVNLSKEEILGKKNILIKQF-SNANLSIFTIDKFVNKILREF------C 114

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
            +  I+D+ + K                  N++++K  YE L+  N++D +TLI 
Sbjct: 115 GYIGISDDFEIK------------------NDDIEKLSYEFLKSLNEKDFQTLID 151


>gi|157738272|ref|YP_001490956.1| putative recombination protein RecB [Arcobacter butzleri RM4018]
 gi|157700126|gb|ABV68286.1| ATP-dependent DNA helicase, UvrD/REP family [Arcobacter butzleri
           RM4018]
          Length = 910

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 31/175 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + LLL  A P+ +L LT T  AA EMS R+ + +     L D+
Sbjct: 7   LKASAGSGKTFALTVRYICLLLLGAKPNEILTLTFTNKAANEMSERIYKTLLT---LGDD 63

Query: 96  ILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
              A +  I+ +   +K ++   +++LI    +   L + TI  F   I+++F     I+
Sbjct: 64  --EAYLNAIENEVNLSKEEILGKKNILIKQF-SNANLSIFTIDKFVNKILREFCGYIGIS 120

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
             F I                         N++++K  YE L+  N++D +TLI 
Sbjct: 121 DDFEIK------------------------NDDIEKLSYEFLKSLNEKDFQTLID 151


>gi|256851163|ref|ZP_05556552.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN]
 gi|260660587|ref|ZP_05861502.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN]
 gi|282934629|ref|ZP_06339872.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
 gi|297206028|ref|ZP_06923423.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16]
 gi|256616225|gb|EEU21413.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN]
 gi|260548309|gb|EEX24284.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN]
 gi|281301204|gb|EFA93505.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
 gi|297149154|gb|EFH29452.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16]
          Length = 1186

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 24/158 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++ TK ++   +   +   VSA+AGSGKT +L +RV++L+        LL +T TKAAA
Sbjct: 1   MVNYTKEQEAAINTRGKDILVSASAGSGKTMVLAERVIKLIKNGTSLDNLLVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+  +      L+DEI      K++            R LL   +       + T
Sbjct: 61  NEMKERIKRV------LNDEIAKNNSRKLK------------RELLRAEVAN-----IST 97

Query: 136 IHAFCEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEA 172
           I +FC  ++ +F     +   F++  DE Q+  L E+A
Sbjct: 98  IDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKA 135


>gi|296272052|ref|YP_003654683.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096227|gb|ADG92177.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 911

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 10/153 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + LLL  A P+ +L LT T  AA EMS R+ + + +     D+
Sbjct: 7   LKASAGSGKTFALTVRYISLLLKGASPTEILALTFTNKAAKEMSERIFKTLKSLGE--DK 64

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +   +I+ +      +  ++K  +L+   L +   L + TI  F   I+++F     +  
Sbjct: 65  VYLEQISSVSELSVEQI-LNKKDYLINLYLNSE--LSIYTIDKFVNKILREFSGYIGVDD 121

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
            F+I  +      IE  +   L S+ L+N ++L
Sbjct: 122 DFSIKQDN-----IENLEYKFLQSLNLENFDKL 149


>gi|226314559|ref|YP_002774455.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599]
 gi|226097509|dbj|BAH45951.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599]
          Length = 1275

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 38/168 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R ++    P     LL +T T AAAAEM HR+ + +     L
Sbjct: 30  VAAAAGSGKTSVLVERIIRRIMDEKDPVGVDRLLVVTFTNAAAAEMRHRIGDALR--KAL 87

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            D+             P+ S + +   LL           + T+H+FC  I++Q+     
Sbjct: 88  KDD-------------PHSSHLRRQLALLQRA-------TITTLHSFCLGILRQYYYLIE 127

Query: 153 ITSHFAIADEEQSKKL----IEEAKKS---------TLASIMLDNNEE 187
           +   F IAD+ + + L    +EE  +S          LA +MLD  ++
Sbjct: 128 LDPDFRIADQMEGELLRQDVLEEQLESWYENDADFHALADVMLDGQDD 175


>gi|241895871|ref|ZP_04783167.1| ATP-dependent deoxyribonuclease, subunit A [Weissella
           paramesenteroides ATCC 33313]
 gi|241870914|gb|EER74665.1| ATP-dependent deoxyribonuclease, subunit A [Weissella
           paramesenteroides ATCC 33313]
          Length = 1269

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 20/168 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+        R+  VSA+AGSGKT +LV+RV++ LLA  + +  L +T T+AAA+EM 
Sbjct: 4   TDSQSAAIKTKGRNVLVSASAGSGKTRVLVERVMQRLLAGENVNEFLIVTFTEAAASEMK 63

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R          L   I S  I  +           + R  L+  L       + T+HAF
Sbjct: 64  ER----------LEGAIRSELIASV----------GEQRQHLLKQLRLLNIANISTLHAF 103

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              +++Q+    ++   F + D+ +   ++ E   + L     ++NE+
Sbjct: 104 ALRLIEQYHYTIDLDPQFRLMDDAERTLVMLEVYNTLLEEQYANDNEQ 151


>gi|329734888|gb|EGG71188.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus
           epidermidis VCU045]
          Length = 1218

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L        LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDEVDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            HF  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 176 -RSIIKQLYFF 185


>gi|293368345|ref|ZP_06614973.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291317592|gb|EFE58010.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 1224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L        LL +T T  +A EM HRV            
Sbjct: 34  VAAAAGSGKTAVLVERIIQRILRDEVDVDRLLVVTFTNLSAREMKHRV------------ 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 82  ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 131

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            HF  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 132 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 181

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 182 -RSIIKQLYFF 191


>gi|154685514|ref|YP_001420675.1| AddA [Bacillus amyloliquefaciens FZB42]
 gi|251764498|sp|A7Z368|ADDA_BACA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|154351365|gb|ABS73444.1| AddA [Bacillus amyloliquefaciens FZB42]
          Length = 1235

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 33/187 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R++R + A   P     LL +T T A+AAEM HR+ E    
Sbjct: 25  RDILVAAAAGSGKTAVLVERMIRKITAEEDPVDVDRLLVVTFTNASAAEMKHRIAE---- 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K   K P    + +   LL           + T+H+FC  +++++ 
Sbjct: 81  -----------ALEKELAKNPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYY 122

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F +AD+ + + L +E     L  +  D   +  +AF+E+ +      +D D+
Sbjct: 123 YMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFFELADRYTTDRHDLDL 178

Query: 205 ETLISDI 211
           + L+  +
Sbjct: 179 QDLVKRV 185


>gi|229541419|ref|ZP_04430479.1| recombination helicase AddA [Bacillus coagulans 36D1]
 gi|229325839|gb|EEN91514.1| recombination helicase AddA [Bacillus coagulans 36D1]
          Length = 1243

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 25/139 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++ +L    P     LL +T T AAAAEM HR+ + I      
Sbjct: 31  VAAAAGSGKTAVLVERIIQKILDEHDPLDIDELLIVTFTNAAAAEMRHRIGKAI------ 84

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +E +S+        +P+   + K   LL           + T+HAFC  +++++    +
Sbjct: 85  -EEAISS--------RPDSHHLRKQLSLL-------NKAPISTLHAFCLEVIRKYYYLID 128

Query: 153 ITSHFAIADEEQSKKLIEE 171
           I   F IAD+ +++ L +E
Sbjct: 129 IDPGFRIADDTEAELLRDE 147


>gi|109946901|ref|YP_664129.1| putative recombination protein RecB [Helicobacter acinonychis str.
           Sheeba]
 gi|109714122|emb|CAJ99130.1| ATP-dependent nuclease subunit A [Helicobacter acinonychis str.
           Sheeba]
          Length = 966

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 9/144 (6%)

Query: 29  DPTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           D  R   V  A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ + 
Sbjct: 2   DTKRQCMVLKASAGSGKTFALSVRFLALLFEGANPSEILTLTFTKKATAEMEGRILDYLK 61

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCE 141
                S E    +   I  +   K D++       A+ +    L     +K+ TI AF +
Sbjct: 62  ILQKESSESEKEKSQNILKELEEKYDLNPSLVQDNAKKIYQRFLNAE--IKISTIDAFFQ 119

Query: 142 AIMQQFPLEANITSHFAIADEEQS 165
           +I+++F     ++++F + ++ Q+
Sbjct: 120 SILRKFCWFVGLSANFEVNEDTQA 143


>gi|330432051|gb|AEC17110.1| DNA-dependent helicase II [Gallibacterium anatis UMN179]
          Length = 721

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 38/168 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D +++ + E + A  P  +  V A AGSGKT +L  R+  L+ + N  P+ +L 
Sbjct: 2   DFSELLDGLNERQREAVAA--PLGNYLVLAGAGSGKTRVLTYRIAWLIGVENVSPNGILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+           +++L  +IT                         
Sbjct: 60  VTFTNKAAAEMRHRI-----------EDLLQDQIT------------------------P 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           P G+ V T H+    ++++   +A + + F I D E   +L++   KS
Sbjct: 85  PFGMWVGTFHSLAHRLLRRHAPDAGLPADFQILDSEDQLRLVKRLVKS 132


>gi|150014906|ref|YP_001307160.1| recombination helicase AddA [Clostridium beijerinckii NCIMB 8052]
 gi|251764509|sp|A6LPC4|ADDA_CLOB8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|149901371|gb|ABR32204.1| Recombination helicase AddA [Clostridium beijerinckii NCIMB 8052]
          Length = 1245

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 35/199 (17%)

Query: 22  SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           +++ L++  TR+    V+A AGSGKT +LV+R++R++    +P     LL +T T AAAA
Sbjct: 7   TDEQLSAIETRNCNLLVAAAAGSGKTAVLVERIIRIITNEENPVDIDKLLVVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ + I+                   K+   +  SK     +T+L       + T+
Sbjct: 67  EMRERIADAIS-------------------KELENNPRSKNLQRQLTLLNRAN---ITTM 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC  +++      ++   F I D  Q++ ++   K   +  +  D  EE    F  ++
Sbjct: 105 HSFCLDVIKNNYHRIDLDPSFRIGD--QTEGIL--IKSEVIEELFEDKYEEEDIGFTNLV 160

Query: 197 EI----SNDEDIETLISDI 211
           EI     ND +++ L+ D+
Sbjct: 161 EIFSSYKNDNNLKNLVLDL 179


>gi|238756289|ref|ZP_04617604.1| DNA helicase II [Yersinia ruckeri ATCC 29473]
 gi|238705495|gb|EEP97897.1| DNA helicase II [Yersinia ruckeri ATCC 29473]
          Length = 720

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQHRLLKRIVKA 129


>gi|207092619|ref|ZP_03240406.1| ATP-dependent nuclease [Helicobacter pylori HPKX_438_AG0C1]
          Length = 210

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 10/134 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQG-------KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            L +E  K Q        K   K D+ +     I        +++ TI AF ++I+++F 
Sbjct: 67  NLESEKEKSQNILKELEEKYHLKPDLVRNSAQKIYQRFLNAEIRISTIDAFFQSILRKFC 126

Query: 149 LEANITSHFAIADE 162
               ++++F + ++
Sbjct: 127 WFVGLSANFEVNED 140


>gi|152974673|ref|YP_001374190.1| recombination helicase AddA [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|251764504|sp|A7GM37|ADDA_BACCN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|152023425|gb|ABS21195.1| Recombination helicase AddA [Bacillus cytotoxicus NVH 391-98]
          Length = 1242

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 28  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 83

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+  ++P+   + K   LL           + TIH+FC  +++ + 
Sbjct: 84  -----------ALEKVLIEEPSSRHIRKQLSLL-------NKASISTIHSFCLQVIRSYY 125

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              +I   F IA++ +++ L EE     L     +   E  + F+E+++      ND+D+
Sbjct: 126 YMLDIDPRFRIANQTENELLKEEVLDDILEE---EYGMEENQLFFELVDRYTSDRNDDDL 182

Query: 205 ETLI 208
           + +I
Sbjct: 183 QRMI 186


>gi|253998950|ref|YP_003051013.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253985629|gb|ACT50486.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 1137

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           + QEH    D  S+ ++ +L       S  V A AG+GKT +L QR L+LL     P  +
Sbjct: 7   ALQEHLLAQDDESRRRALEL------ESFIVEAPAGAGKTELLTQRYLKLLTTVREPEEI 60

Query: 66  LCLTHTKAAAAEMSHRVLE-IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           + +T T  AAAEM  R+L+ ++ A S      L  ++T   G+   +    +  HL    
Sbjct: 61  IAITFTNKAAAEMRARILDSLLMADSGERPPQLHKQMTFALGQDALQHAAERGWHL---- 116

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
           LE P  L++ TI +    + +Q PL +   +  A+ ++  +
Sbjct: 117 LENPARLRIFTIDSLSSHLARQMPLMSRFGAQPAVTEDASA 157


>gi|317013352|gb|ADU83960.1| putative recombination protein RecB [Helicobacter pylori
           Lithuania75]
          Length = 951

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 15/162 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQG-------KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            L +E  K Q        K   K D+ +     I        +++ TI AF ++I+++F 
Sbjct: 67  NLESEKEKSQNILKELEEKYHLKPDLVRNSAPKIYQRFLNAEIRISTIDAFFQSILRKFC 126

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
               ++++F +   E +K   ++   S L+++   N E+L+K
Sbjct: 127 WFVGLSANFEV--NEDTKAHQQQLNASFLSAL---NGEQLEK 163


>gi|266620646|ref|ZP_06113581.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479]
 gi|288867733|gb|EFD00032.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479]
          Length = 1244

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 25/149 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           I+ TK ++ +     R+  VSA AGSGKT +LV+R++R++    +P     LL +T TKA
Sbjct: 3   INWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITEGKNPLDIDQLLVMTFTKA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RVL  +       DE L  +        P  S      HL +     P   ++
Sbjct: 63  AADEMRERVLLAV-------DEKLKED--------PENS------HLQMQAAMIPYA-RI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADE 162
            TI +FC  I+++     +I   F + DE
Sbjct: 101 TTIDSFCLGIIREHYNRLDIDPAFRVGDE 129


>gi|325261823|ref|ZP_08128561.1| ATP-dependent nuclease subunit A [Clostridium sp. D5]
 gi|324033277|gb|EGB94554.1| ATP-dependent nuclease subunit A [Clostridium sp. D5]
          Length = 1263

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 25/195 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKA 73
           +  T  +Q +     R+  VSA AGSGKT +LV+R++++L     P+    LL +T T+A
Sbjct: 3   VKWTSEQQKVIDLRERNILVSAAAGSGKTAVLVERIIQMLTDPKKPADVDRLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ E                I K   ++P    + +   L+ +        ++
Sbjct: 63  AAAEMKERIRE---------------AIEKSLEERPEDVHLQRQATLIHSA-------QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC +++++     +I   F IA+E + K L ++     L +  ++ +    +   
Sbjct: 101 TTIHSFCLSVIREHFHVLDIDPGFRIAEEGELKLLKQDVLDELLEACYVNADTPFLEFVE 160

Query: 194 EILEISNDEDIETLI 208
           +     ND+ IE +I
Sbjct: 161 KFGTGRNDKKIEEII 175


>gi|227529820|ref|ZP_03959869.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350304|gb|EEJ40595.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis
           ATCC 49540]
          Length = 1286

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 20/193 (10%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q    D  ++  VSA+AGSGKT +LV+R ++L+    H   +L +T T AAA  M 
Sbjct: 7   TPSQQRAIDDRGKNILVSASAGSGKTAVLVERAIKLIREGIHVDRMLMVTFTDAAAKSMR 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++ E +     +   + +AE  + Q +  N+          I  L T     + TIHAF
Sbjct: 67  DKIREALQ--EAVRQPVHNAEEQQQQRRMINE----------INRLATA---DISTIHAF 111

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM----LDNNEELKKAFYEI 195
           C  +++++    ++   F +  ++  + L++E     ++  +    L+   + + +F E+
Sbjct: 112 CLKLIKRYYYLIHLDPQFRLLTDDTERLLLQEEIWQQVSEKLYESPLEQANDERASFSEL 171

Query: 196 L-EISNDEDIETL 207
           +   SND D + L
Sbjct: 172 VTNFSNDRDAQGL 184


>gi|237733547|ref|ZP_04564028.1| ATP-dependent deoxyribonuclease subunit A [Mollicutes bacterium D7]
 gi|229383380|gb|EEO33471.1| ATP-dependent deoxyribonuclease subunit A [Coprobacillus sp. D7]
          Length = 1233

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 20/129 (15%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           S  VSA AGSGKT ILV R++ L+  + +    LL LT T AAA EM  R+   +     
Sbjct: 20  SILVSAPAGSGKTKILVNRIMALIEDDGYNVDQLLVLTFTNAAALEMKQRLQVAL----- 74

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             DE L  +I      KP +  + K + LL      P    +   H FC  +++Q+    
Sbjct: 75  --DERLQEDIN-----KPLEQHLLKQKQLL------PKAY-ITNFHGFCSTLLKQYGYLI 120

Query: 152 NITSHFAIA 160
           N+ S F I 
Sbjct: 121 NLNSKFDIC 129


>gi|167754673|ref|ZP_02426800.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402]
 gi|167705505|gb|EDS20084.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402]
          Length = 1233

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 20/129 (15%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           S  VSA AGSGKT ILV R++ L+  + +    LL LT T AAA EM  R+   +     
Sbjct: 20  SILVSAPAGSGKTKILVNRIMALIEDDGYNVDQLLVLTFTNAAALEMKQRLQVAL----- 74

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             DE L  +I      KP +  + K + LL      P    +   H FC  +++Q+    
Sbjct: 75  --DERLQEDIN-----KPLEQHLLKQKQLL------PKAY-ITNFHGFCSTLLKQYGYLI 120

Query: 152 NITSHFAIA 160
           N+ S F I 
Sbjct: 121 NLNSKFDIC 129


>gi|153951355|ref|YP_001398782.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938801|gb|ABS43542.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 921

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 13/133 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++EI       +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIEIFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E+ K+ GK  +K ++     +K    L T       LK+ T  AF   I++ F L 
Sbjct: 70  SECNELCKLLGK--DKEELISLRNAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121

Query: 151 ANITSHFAIADEE 163
             ++S F +++E+
Sbjct: 122 LGLSSDFTMSEEK 134


>gi|257884720|ref|ZP_05664373.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
 gi|257820558|gb|EEV47706.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
          Length = 1240

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  AVNSE-----------SDPVRRQHFTKQLILLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|217963572|ref|YP_002349250.1| recombination helicase AddA [Listeria monocytogenes HCC23]
 gi|251764533|sp|B8DF44|ADDA_LISMH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|217332842|gb|ACK38636.1| recombination helicase AddA [Listeria monocytogenes HCC23]
 gi|307571852|emb|CAR85031.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes L99]
          Length = 1235

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 34/184 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R+++ L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIKKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +  G+ P+ + + +   LL           + T+H+FC  I++++  EA+
Sbjct: 81  -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILEI----SNDEDIETL 207
           I   F + +  +S  + +E  +  L     ++NNE    AF+ ++E      +D ++ +L
Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184

Query: 208 ISDI 211
           IS +
Sbjct: 185 ISKL 188


>gi|227810114|ref|ZP_03989027.1| UvrD/REP helicase [Acidaminococcus sp. D21]
 gi|226904694|gb|EEH90612.1| UvrD/REP helicase [Acidaminococcus sp. D21]
          Length = 611

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 21/150 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           TK + L  +   R+  VSA AGSGKT +LV+R L +L   +   + +L +T T+ AA EM
Sbjct: 7   TKEQTLAITTLDRNVSVSAGAGSGKTRVLVERFLTILKDPDKSANRILAITFTRKAAREM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+            + L  E+ K  G+     +  + RHL         G  + TI  
Sbjct: 67  RERI-----------RKSLLEEVGKTSGELRAHFE-EQLRHL--------DGAPITTIDG 106

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           FC  I++  P+EA +   F + +E + K+ 
Sbjct: 107 FCSQILRDHPVEAGMDPQFTVKEEYEVKEF 136


>gi|257898678|ref|ZP_05678331.1| UvrD/REP helicase [Enterococcus faecium Com15]
 gi|257836590|gb|EEV61664.1| UvrD/REP helicase [Enterococcus faecium Com15]
          Length = 1240

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|229546208|ref|ZP_04434933.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           TX1322]
 gi|256852763|ref|ZP_05558133.1| exonuclease RexA [Enterococcus faecalis T8]
 gi|307291096|ref|ZP_07570981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411]
 gi|229308732|gb|EEN74719.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           TX1322]
 gi|256711222|gb|EEU26260.1| exonuclease RexA [Enterococcus faecalis T8]
 gi|306497750|gb|EFM67282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411]
          Length = 1264

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + +  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|118594717|ref|ZP_01552064.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
 gi|118440495|gb|EAV47122.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
          Length = 1074

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 90/163 (55%), Gaps = 16/163 (9%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A++P +S  V+A AGSGKT +LV R+L+LL     PS ++ +T TK AAA+M  ++++++
Sbjct: 14  ATNPLQSFVVNAPAGSGKTTLLVTRILKLLTIIEKPSEIIAITFTKKAAAQMRRKLIDVM 73

Query: 87  TA-WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
               + ++DE+ +  +   +         +  R      +E+   + + TI +    I++
Sbjct: 74  GKNENKINDEVRTLALKAKEN--------AINRGWEANFIES---MDIITIDSLASKIIR 122

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           + P+ +  +S FA   E+ S++  E AK++ L   M +N+ EL
Sbjct: 123 KAPILS--SSFFANITEDPSEQYEEAAKRTILE--MNENDMEL 161


>gi|114566673|ref|YP_753827.1| ATP-dependent exoDNAse subunit beta [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|122318286|sp|Q0AXU8|ADDA_SYNWW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|114337608|gb|ABI68456.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 1236

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 31/178 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++L+L +      LL +T T+AAA EM  R+           +
Sbjct: 21  VAAAAGSGKTTVLVERIIQLVLRDRIDIDRLLIVTFTQAAAGEMRERI-----------N 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                E+ K       + D    R L +    +     + TIHAFC  +++Q     NI 
Sbjct: 70  AAFFKELEK------GREDGHLRRQLYLLNRSS-----ISTIHAFCSDVVRQHFHLVNID 118

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208
            HF IAD  ++    E  K   L  ++    E+    F +++E      +D+ +E LI
Sbjct: 119 PHFRIADSTET----ELIKMEVLEELLDGEYEKGNDGFLDLVEAFGSNKDDKPLEALI 172


>gi|293572573|ref|ZP_06683547.1| recombination helicase AddA [Enterococcus faecium E980]
 gi|291607356|gb|EFF36704.1| recombination helicase AddA [Enterococcus faecium E980]
          Length = 1240

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|86151975|ref|ZP_01070188.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85841083|gb|EAQ58332.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 921

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 13/133 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E+ K+ GK  +K ++     +K    L T       LK+ T  AF   I++ F L 
Sbjct: 70  SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121

Query: 151 ANITSHFAIADEE 163
             ++S FA+++E+
Sbjct: 122 LGLSSDFAMSEEK 134


>gi|257887557|ref|ZP_05667210.1| UvrD/REP helicase [Enterococcus faecium 1,141,733]
 gi|257823611|gb|EEV50543.1| UvrD/REP helicase [Enterococcus faecium 1,141,733]
          Length = 1240

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|257085626|ref|ZP_05579987.1| UvrD/REP helicase [Enterococcus faecalis Fly1]
 gi|256993656|gb|EEU80958.1| UvrD/REP helicase [Enterococcus faecalis Fly1]
          Length = 1264

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + +  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|293378777|ref|ZP_06624934.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1]
 gi|292642570|gb|EFF60723.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1]
          Length = 1240

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|227551328|ref|ZP_03981377.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium
           TX1330]
 gi|257896051|ref|ZP_05675704.1| UvrD/REP helicase [Enterococcus faecium Com12]
 gi|227179539|gb|EEI60511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium
           TX1330]
 gi|257832616|gb|EEV59037.1| UvrD/REP helicase [Enterococcus faecium Com12]
          Length = 1240

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|23098637|ref|NP_692103.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis
           HTE831]
 gi|81746699|sp|Q8ERW5|ADDA_OCEIH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|22776864|dbj|BAC13138.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis
           HTE831]
          Length = 1243

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 26/164 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++ LLA  +P+    LL +T T AAA EM +RV   +      
Sbjct: 21  VAAAAGSGKTAVLVERIIQKLLAEHNPTNIDALLVVTFTNAAAQEMRNRVGAAL------ 74

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            ++ L+A  + I  KK             +++L+      + T+H+FC  I+++     +
Sbjct: 75  -EQALAANPSSIHLKKQ------------LSLLQRAS---ISTLHSFCLDIVKKNAYILD 118

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           I   F IAD+ +   L +E     L     D+N   + +F+E++
Sbjct: 119 IDPSFRIADDMEMDLLKQEVLDDLLEEWYGDSNPN-QDSFFEVV 161


>gi|315030721|gb|EFT42653.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4000]
          Length = 1271

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 31  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + +  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 86  -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 184

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 185 --DDGLTN-----LIFSFYEF 198


>gi|69246355|ref|ZP_00603911.1| UvrD/REP helicase [Enterococcus faecium DO]
 gi|258616338|ref|ZP_05714108.1| exonuclease RexA [Enterococcus faecium DO]
 gi|68195308|gb|EAN09759.1| UvrD/REP helicase [Enterococcus faecium DO]
          Length = 1240

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|293569779|ref|ZP_06680866.1| recombination helicase AddA [Enterococcus faecium E1071]
 gi|291587527|gb|EFF19404.1| recombination helicase AddA [Enterococcus faecium E1071]
          Length = 1240

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|116493558|ref|YP_805293.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           pentosaceus ATCC 25745]
 gi|122264978|sp|Q03D71|ADDA_PEDPA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116103708|gb|ABJ68851.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           pentosaceus ATCC 25745]
          Length = 1235

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 21/136 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV++ ++       LL +T T+AAA+EM  R+   I         
Sbjct: 23  VSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAASEMKERIRAAIV-------- 74

Query: 96  ILSAEITKIQGKKPNK-SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      KK N+ SD+    H  +  L       + T+HAFC +I++ +    ++ 
Sbjct: 75  -----------KKINEVSDIELQNHFSMQ-LNKLNNANISTLHAFCMSIIRNYYYIIDLD 122

Query: 155 SHFAIADEEQSKKLIE 170
             F I D  +S+ L E
Sbjct: 123 PTFRIMDPTESELLKE 138


>gi|320529153|ref|ZP_08030245.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399]
 gi|320138783|gb|EFW30673.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399]
          Length = 1281

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 24/136 (17%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ ++         +L LT TKAAAAEM  R+           +
Sbjct: 24  VAAAAGSGKTRVLVERIIAQVRSGELSLDRVLVLTFTKAAAAEMRERI-----------E 72

Query: 95  EILSAEITKIQGKKPNKSDMSKA------RHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
             L+AEI +I  ++   SD  +       + +L+T      G  + T H+FC+ I+Q + 
Sbjct: 73  TALNAEIDRIAEERAATSDADEEIAALERQRILLT------GADISTFHSFCQRILQTYI 126

Query: 149 LEANITSHFAIADEEQ 164
               I  ++ +A E++
Sbjct: 127 EATQIPPNYRLASEQE 142


>gi|256962291|ref|ZP_05566462.1| UvrD/REP helicase [Enterococcus faecalis Merz96]
 gi|293383320|ref|ZP_06629235.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712]
 gi|293387523|ref|ZP_06632072.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613]
 gi|312905827|ref|ZP_07764847.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512]
 gi|312909118|ref|ZP_07767977.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516]
 gi|256952787|gb|EEU69419.1| UvrD/REP helicase [Enterococcus faecalis Merz96]
 gi|291079343|gb|EFE16707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712]
 gi|291083033|gb|EFE19996.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613]
 gi|310628166|gb|EFQ11449.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512]
 gi|311290542|gb|EFQ69098.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516]
          Length = 1264

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + +  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY++    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|153209587|ref|ZP_01947447.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218647|ref|YP_002305434.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154]
 gi|120575306|gb|EAX31930.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012909|gb|ACJ20289.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154]
          Length = 1110

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R   II
Sbjct: 10  ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A +    +   +E  K       +  + + +H    +   P  L++ TI A    I  Q
Sbjct: 67  AALNEAQTQPAPSESHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126

Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172
            P+     +  +  + E+  +   EA
Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152


>gi|165924171|ref|ZP_02220003.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334]
 gi|165916386|gb|EDR34990.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334]
          Length = 1110

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R   II
Sbjct: 10  ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A +    +   +E  K       +  + + +H    +   P  L++ TI A    I  Q
Sbjct: 67  AALNEAQTQPAPSESHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126

Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172
            P+     +  +  + E+  +   EA
Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152


>gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
 gi|88187314|gb|ABD40311.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
          Length = 1149

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 27/187 (14%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           S  V+A AG+GKT +LV++ L L+    +    +L LT T  AAAEM  RV + I     
Sbjct: 17  SMVVTAGAGTGKTFVLVEKYLNLVQDQGYRIRDVLALTFTDKAAAEMKERVRKTIA--ER 74

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L D+             P+      A   L+          V T H+FC  I+++F +EA
Sbjct: 75  LKDD-------------PDNQVWKDAHEELVIA-------PVMTFHSFCAQILREFAIEA 114

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
            +   F I DE Q+  +  EA      +++    EE++++   +L       +  +++ +
Sbjct: 115 GLDPGFVILDEGQALAVEREA----FETLIRKPPEEIQESLIRLLAQIEKFQVNQIMTTL 170

Query: 212 ISNRTAL 218
             N  A 
Sbjct: 171 AKNTDAF 177


>gi|289435607|ref|YP_003465479.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171851|emb|CBH28397.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 1236

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 56/216 (25%)

Query: 24  QLLASDPTRSAW----------------VSANAGSGKTHILVQRVLRLLL---ANAHPST 64
           QL+   P  S W                V+A AGSGKT +LV R++  L+   +N +   
Sbjct: 3   QLIPEKPNDSTWTDDQWKAIQADGENILVAAAAGSGKTAVLVTRIIEKLINEKSNWNVDE 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T A+AAEM  R+         L DE+          + P+ + + K   +L   
Sbjct: 63  LLIVTFTNASAAEMKFRI------GKALEDEL---------AQNPDSAHLKKQVAML--- 104

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                   + T+H+FC  I+++   EA+I  +F         +LIE  + S +   +L+N
Sbjct: 105 ----NYASISTLHSFCLEIIRKHYFEADIDPNF---------RLIEPIESSMIRDEVLEN 151

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220
              L+KA+     I N+ D   L+     +R+  +L
Sbjct: 152 --LLEKAY----SIENNNDFFHLVESFTGDRSDTEL 181


>gi|293554030|ref|ZP_06674630.1| recombination helicase AddA [Enterococcus faecium E1039]
 gi|291601812|gb|EFF32064.1| recombination helicase AddA [Enterococcus faecium E1039]
          Length = 1240

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|317128676|ref|YP_004094958.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522]
 gi|315473624|gb|ADU30227.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522]
          Length = 1242

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 23/127 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++R ++  N     LL +T T AAAAEM HR+ + I     L D
Sbjct: 29  VAAAAGSGKTAVLVERIIRKIVNHNVDVDQLLIVTFTNAAAAEMRHRIGDAIE--KQLKD 86

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           +  S  + +                  +T+L       + T+H+FC  +++QF    +I 
Sbjct: 87  DPTSLHLRR-----------------QLTLLNRAN---ISTLHSFCMKVVRQFYYVVDID 126

Query: 155 SHFAIAD 161
             F + D
Sbjct: 127 PSFRLLD 133


>gi|308062822|gb|ADO04710.1| putative recombination protein RecB [Helicobacter pylori Cuz20]
          Length = 949

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 19/165 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145
            L  E  K + +   K ++ +  HL  + ++              +++ TI AF ++I++
Sbjct: 67  NLEDEKEKEKSQNILK-ELEEKYHLNPSFVQNSAQEIYQRFLNAEMRISTIDAFFQSILR 125

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +F     ++++F +   E +K   ++   S L+++   NNE+L++
Sbjct: 126 KFCWFVGLSANFEV--NEDTKAHQQQLNASFLSAL---NNEQLEE 165


>gi|291556731|emb|CBL33848.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Eubacterium siraeum
           V10Sc8a]
          Length = 1235

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 23/179 (12%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           A VSA AGSGKT +L QRV+RL+     N  PS ++ +T T+ AA E+  R+  ++    
Sbjct: 18  AIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTEKAANELKARLDALMR--Q 75

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPL 149
            +S+ + SA++  ++ +   +  + KAR              + TI +FC +++++   L
Sbjct: 76  RISEAVSSADVRFLRNQ---RMKLRKAR--------------ISTISSFCFSLLRENIDL 118

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
             +I++ F++ DE +S  L E+     L     + ++  +    E     +D  +  +I
Sbjct: 119 VTDISAGFSLIDETRSTALKEDILSDVLEDFYANGDKADRDVIVENYVAKDDRRLRDII 177


>gi|310826445|ref|YP_003958802.1| recombination helicase AddA [Eubacterium limosum KIST612]
 gi|308738179|gb|ADO35839.1| recombination helicase AddA [Eubacterium limosum KIST612]
          Length = 1190

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 22/138 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +L++R+ R+++        LL LT T++AAAEM  R             
Sbjct: 20  VSAAAGSGKTALLIERIRRIVVEEKTSVDALLVLTFTRSAAAEMKER------------- 66

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             LSA +     K+   SD       +I  +   G   + T+HAFC  +++ +  E  I 
Sbjct: 67  --LSAALMAELEKEDVDSD------FVIAQISRLGAASISTLHAFCSRLVRDYFQEGGID 118

Query: 155 SHFAIADEEQSKKLIEEA 172
             F + +E +   +++EA
Sbjct: 119 PEFKLGNETELSIMLQEA 136


>gi|212710171|ref|ZP_03318299.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM
           30120]
 gi|212687170|gb|EEB46698.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM
           30120]
          Length = 723

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 39/141 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + NA P +++ +T T  AAAEM HR+ +++  
Sbjct: 24  PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINQLVGT 83

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ + T H     +++Q  
Sbjct: 84  --------------------------------------SEGGMWIGTFHGLAHRLLRQHY 105

Query: 149 LEANITSHFAIADEEQSKKLI 169
           L+AN+   F I D +   +LI
Sbjct: 106 LDANLPQDFQILDSDDQYRLI 126


>gi|261415584|ref|YP_003249267.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372040|gb|ACX74785.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326087|gb|ADL25288.1| exodeoxyribonuclease V, beta subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 1266

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           DP++S ++ A+AG+GKT+ +   V +L+        +L +T+T+ AA E+  R+ + I  
Sbjct: 10  DPSQSLFIEASAGTGKTYTIQLMVSKLIKLGTPLKKILIVTYTEKAAGELKDRIRKKI-- 67

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT-ILETPGGLKVQTIHAFCEAIMQQF 147
                DE+L     KI     ++  +S A+  L T   +      + TIH+FC+  +++F
Sbjct: 68  -----DEVLINR--KIDKSDDSEEPLSDAKIALFTKAYQDVDNAAIFTIHSFCQKALKEF 120

Query: 148 PLEANITSHFAIADEEQSKKLIEE 171
             +A    + ++ D+++   LIE+
Sbjct: 121 AYDAGRPFNMSMIDDKEVNDLIEK 144


>gi|300721452|ref|YP_003710727.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila
           ATCC 19061]
 gi|297627944|emb|CBJ88490.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila
           ATCC 19061]
          Length = 721

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 43/158 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  LL + NA P +++ +T T  AAAEM HR+  +I  
Sbjct: 21  PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMAVTFTNKAAAEMRHRIENLIGT 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ + T H+    +++   
Sbjct: 81  --------------------------------------SQGGMWIGTFHSLAHRLLRAHH 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           L+AN+   F I D E   +LI    K  + ++ LD+ +
Sbjct: 103 LDANLPQDFQILDSEDQHRLI----KRIIKAMNLDDKQ 136


>gi|317178260|dbj|BAJ56049.1| helicase [Helicobacter pylori F16]
          Length = 947

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 15/162 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148
            L  E  K Q      ++  + D S  ++    I +      +++ TI AF ++I+++F 
Sbjct: 67  NLENEKEKSQNILKELEEKYRLDPSFVQNNAQKIYQRFLNAEIRISTIDAFFQSILRKFC 126

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
               ++++F +   E +K   ++  +S L+++   NN++L++
Sbjct: 127 WFVGLSANFEV--NEDTKAYQQQLNESFLSAL---NNKQLEE 163


>gi|257881059|ref|ZP_05660712.1| UvrD/REP helicase [Enterococcus faecium 1,231,502]
 gi|257889644|ref|ZP_05669297.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|260559204|ref|ZP_05831390.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|293563136|ref|ZP_06677601.1| recombination helicase AddA [Enterococcus faecium E1162]
 gi|294623302|ref|ZP_06702164.1| recombination helicase AddA [Enterococcus faecium U0317]
 gi|314939883|ref|ZP_07847089.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04]
 gi|314943730|ref|ZP_07850469.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C]
 gi|314949686|ref|ZP_07853004.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082]
 gi|314953232|ref|ZP_07856171.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A]
 gi|314993688|ref|ZP_07859036.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B]
 gi|314997395|ref|ZP_07862346.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01]
 gi|257816717|gb|EEV44045.1| UvrD/REP helicase [Enterococcus faecium 1,231,502]
 gi|257826004|gb|EEV52630.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|260074961|gb|EEW63277.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|291597270|gb|EFF28459.1| recombination helicase AddA [Enterococcus faecium U0317]
 gi|291604914|gb|EFF34383.1| recombination helicase AddA [Enterococcus faecium E1162]
 gi|313588530|gb|EFR67375.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01]
 gi|313591862|gb|EFR70707.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B]
 gi|313594698|gb|EFR73543.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A]
 gi|313597593|gb|EFR76438.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C]
 gi|313640846|gb|EFS05426.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04]
 gi|313643944|gb|EFS08524.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082]
          Length = 1240

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  SVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|325109169|ref|YP_004270237.1| exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305]
 gi|324969437|gb|ADY60215.1| Exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305]
          Length = 1168

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 23/161 (14%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAAAAEMSHRVLEIITAW 89
           S  ++A AG GKT +L QR +  LL      TL   + +T T  AA EM  R+ E +   
Sbjct: 17  SIALAAGAGCGKTFVLTQRFVTELLQQPSAETLSGLMAITFTDRAAREMRDRIREAV--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
               D++L+ E       +P       A   ++  LET    +VQTIHAFC A ++    
Sbjct: 74  ---RDQLLTCE----DADQP-------AWQEILQNLETA---RVQTIHAFCGATLRTHAT 116

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           E  +   F + DE  +  +  +  +S L+ ++ + N +L++
Sbjct: 117 ELGLDPDFGMLDEPTAAAMRNQVIQSELSRLLRERNADLQE 157


>gi|261207737|ref|ZP_05922422.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|294614014|ref|ZP_06693944.1| recombination helicase AddA [Enterococcus faecium E1636]
 gi|260078120|gb|EEW65826.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|291593121|gb|EFF24700.1| recombination helicase AddA [Enterococcus faecium E1636]
          Length = 1240

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  SVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|294618395|ref|ZP_06697972.1| recombination helicase AddA [Enterococcus faecium E1679]
 gi|291595345|gb|EFF26661.1| recombination helicase AddA [Enterococcus faecium E1679]
          Length = 1240

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM  R+ E +        E
Sbjct: 30  VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +++E           SD  + +H    ++  P    + T+HAFC  +++++    +I  
Sbjct: 83  SVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            F +  +E    L++E     L   +   N+E  + F   +  SND   + L + + S
Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186


>gi|187935208|ref|YP_001884280.1| recombination helicase AddA [Clostridium botulinum B str. Eklund
           17B]
 gi|251764511|sp|B2THC8|ADDA_CLOBB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|187723361|gb|ACD24582.1| ATP-dependent nuclease subunit A [Clostridium botulinum B str.
           Eklund 17B]
          Length = 1243

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 28/155 (18%)

Query: 17  ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +S TK +E+ L++  TR     V+A AGSGKT +LV+R+++++    +P     LL +T 
Sbjct: 1   MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+   I+                   KK +++  SK     +T+L     
Sbjct: 61  TSAAAAEMRERIANAIS-------------------KKLDETPTSKNLQKQLTLLNRSN- 100

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             + TIH+FC  +++    + ++   F I D+ + 
Sbjct: 101 --IMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEG 133


>gi|304440181|ref|ZP_07400071.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371230|gb|EFM24846.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 1076

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 28/157 (17%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           I+ I     + L+  D  ++  V A AG+GKT +LV R++ L++  N  P  ++ +T T 
Sbjct: 7   INEIENNNRDNLITGD--KNFLVEAGAGAGKTFLLVNRLIDLIINKNIKPKEIVAITFTV 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA ++  R+ +               E  K + K  NK         +  ILE    ++
Sbjct: 65  KAATDLKKRIYD---------------EFAK-RAKTDNK---------IKNILEFIPEIQ 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           + TIH+FC +I+ + P +A ++ ++ + ++ +  + +
Sbjct: 100 IGTIHSFCNSIISRRPFDAGLSMNYRLLEDSEYDRYL 136


>gi|160902562|ref|YP_001568143.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
 gi|160360206|gb|ABX31820.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
          Length = 1065

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 20/155 (12%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRV 82
            DP R+ ++SA+AG+GKT+IL Q  +++L  N  P+      +L +T T  AA+EM +R+
Sbjct: 13  DDPNRNFFISASAGTGKTYILTQYFIKVLEKN-FPNADIVDNILTVTFTNKAASEMKNRI 71

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           +E ++          ++++   Q     K ++S++               ++TI +FC  
Sbjct: 72  MEEVSNKLDKKPPYGASKLEWYQYWNEVKINLSRSW--------------IKTIDSFCSR 117

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           I+++  +   +  +F+I  + Q  + +E +  S L
Sbjct: 118 IIRENNISVGVDPNFSIISDFQRDREVERSVYSAL 152


>gi|188589987|ref|YP_001919480.1| recombination helicase AddA [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251764510|sp|B2UX57|ADDA_CLOBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|188500268|gb|ACD53404.1| ATP-dependent nuclease subunit A [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 1244

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 28/155 (18%)

Query: 17  ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +S TK +E+ L++  TR     V+A AGSGKT +LV+R+++++    +P     LL +T 
Sbjct: 1   MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+   I+                   KK +++  SK     +T+L     
Sbjct: 61  TSAAAAEMRERIANAIS-------------------KKLDETPTSKNLQKQLTLLNRSN- 100

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             + TIH+FC  +++    + ++   F I D+ + 
Sbjct: 101 --IMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEG 133


>gi|307267168|ref|ZP_07548676.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917819|gb|EFN48085.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 358

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 49/233 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T  +QL  +    +  V+A AGSGKT +LV+R+++L+  + +P     LL +T T AAA+
Sbjct: 6   TYEQQLAINTRGSNLLVAAGAGSGKTAVLVERIIKLVTDDKNPVDIDKLLVVTFTNAAAS 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ E              A I+K+  + P    +S    LL           + TI
Sbjct: 66  EMRERIAE--------------ALISKLD-QNPEDRRLSNQLTLL-------NKATITTI 103

Query: 137 HAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           H+FC E +   F L  ++  +F I D+ ++  L  EA               +++ F E+
Sbjct: 104 HSFCLEVVRNNFFL-IDLDPNFRIGDDTETLLLKLEA---------------VEELFEEL 147

Query: 196 LEISNDEDIETLISDIISNRTA-------LKLIFFFFSYLWRRKIIEKSLWSI 241
            +  ++ED  TL+      +         LKL  F  S  W  K +   L S 
Sbjct: 148 YQKEDNEDFLTLVESYGGTKDDKPLVDILLKLYDFVKSLPWPEKWLRDVLLSF 200


>gi|255030234|ref|ZP_05302185.1| hypothetical protein LmonL_16176 [Listeria monocytogenes LO28]
          Length = 218

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +  G+ P+ + + +   LL           + T+H+FC  I++++  EA+
Sbjct: 81  -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILEI----SNDEDIETL 207
           I   F + +  +S  + +E  +  L     ++NNE    AF+ ++E      +D ++ +L
Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184

Query: 208 ISDI 211
           IS +
Sbjct: 185 ISKL 188


>gi|284802713|ref|YP_003414578.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578]
 gi|284995855|ref|YP_003417623.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923]
 gi|284058275|gb|ADB69216.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578]
 gi|284061322|gb|ADB72261.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923]
          Length = 1235

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +  G+ P+ + + +   LL           + T+H+FC  I++++  EA+
Sbjct: 81  -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207
           I   F + +  +S  + +E  +  L     ++NNE    AF+ ++E      +D ++ +L
Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184

Query: 208 ISDI 211
           IS +
Sbjct: 185 ISKL 188


>gi|315150316|gb|EFT94332.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0012]
          Length = 1264

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 35/201 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM  R+      
Sbjct: 24  DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                          +Q     + +  + RH    I   P    + T+HAFC  ++++F 
Sbjct: 79  -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124

Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206
              +I   F  + DE ++  L E+   +       +N EE    FY +    SND     
Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYRLTANFSNDRS--- 177

Query: 207 LISDIISNRTALKLIFFFFSY 227
              D ++N     LIF F+ +
Sbjct: 178 --DDGLTN-----LIFSFYEF 191


>gi|291327137|ref|ZP_06127128.2| DNA helicase II [Providencia rettgeri DSM 1131]
 gi|291311697|gb|EFE52150.1| DNA helicase II [Providencia rettgeri DSM 1131]
          Length = 723

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 39/141 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + NA P +++ +T T  AAAEM HR+ ++I  
Sbjct: 24  PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINQLIGT 83

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ + T H     +++Q  
Sbjct: 84  --------------------------------------SEGGMWIGTFHGLAHRLLRQHY 105

Query: 149 LEANITSHFAIADEEQSKKLI 169
           ++AN+   F I D +   +LI
Sbjct: 106 MDANLPQDFQILDSDDQYRLI 126


>gi|16804306|ref|NP_465791.1| hypothetical protein lmo2267 [Listeria monocytogenes EGD-e]
 gi|224500935|ref|ZP_03669242.1| hypothetical protein LmonFR_00190 [Listeria monocytogenes FSL
           R2-561]
 gi|81592702|sp|Q8Y511|ADDA_LISMO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|16411737|emb|CAD00345.1| lmo2267 [Listeria monocytogenes EGD-e]
          Length = 1235

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +  G+ P+ + + +   LL           + T+H+FC  I++++  EA+
Sbjct: 81  -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207
           I   F + +  +S  + +E  +  L     ++NNE    AF+ ++E      +D ++ +L
Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184

Query: 208 ISDI 211
           IS +
Sbjct: 185 ISKL 188


>gi|317470347|ref|ZP_07929738.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA]
 gi|316902151|gb|EFV24074.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA]
          Length = 1186

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 29/181 (16%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           TK +Q +  +   S  VSA AGSGKT +LV+R++  + +   P     LL +T+T AAA 
Sbjct: 4   TKEQQQVIEERGCSLLVSAAAGSGKTAVLVERIIEKISSKEEPVDVDRLLVVTYTHAAAN 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   I                K++    N+         LI  L      ++ TI
Sbjct: 64  EMKERIRRAIE--------------KKVEEDPENEH--------LIRQLSLIHKAQITTI 101

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC  +++ +  + ++  +FAI D+ Q    ++  K   L  ++ +   E   AF E +
Sbjct: 102 HSFCLNLIRDYYYKLDLDPNFAIGDQGQ----MDLMKLEVLDDVLEEAYAEQSDAFVEFI 157

Query: 197 E 197
           E
Sbjct: 158 E 158


>gi|224499009|ref|ZP_03667358.1| hypothetical protein LmonF1_04628 [Listeria monocytogenes Finland
           1988]
 gi|254826845|ref|ZP_05231532.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165]
 gi|258599223|gb|EEW12548.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165]
          Length = 1235

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +  G+ P+ + + +   LL           + T+H+FC  I++++  EA+
Sbjct: 81  -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207
           I   F + +  +S  + +E  +  L     ++NNE    AF+ ++E      +D ++ +L
Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184

Query: 208 ISDI 211
           IS +
Sbjct: 185 ISKL 188


>gi|47097165|ref|ZP_00234731.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899032|ref|ZP_05258956.1| hypothetical protein LmonJ_04449 [Listeria monocytogenes J0161]
 gi|254912827|ref|ZP_05262839.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
 gi|254937154|ref|ZP_05268851.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
 gi|47014470|gb|EAL05437.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609758|gb|EEW22366.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
 gi|293590824|gb|EFF99158.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
          Length = 1235

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +  G+ P+ + + +   LL           + T+H+FC  I++++  EA+
Sbjct: 81  -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILEI----SNDEDIETL 207
           I   F + +  +S  + +E  +  L     ++NNE    AF+ ++E      +D ++ +L
Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184

Query: 208 ISDI 211
           IS +
Sbjct: 185 ISKL 188


>gi|254831297|ref|ZP_05235952.1| hypothetical protein Lmon1_08062 [Listeria monocytogenes 10403S]
          Length = 1235

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +  G+ P+ + + +   LL           + T+H+FC  I++++  EA+
Sbjct: 81  -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207
           I   F + +  +S  + +E  +  L     ++NNE    AF+ ++E      +D ++ +L
Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184

Query: 208 ISDI 211
           IS +
Sbjct: 185 ISKL 188


>gi|2625021|gb|AAC46278.1| DNA helicase II [Serratia marcescens]
          Length = 720

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   LEAN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLEANLPQDFQILDSDDQLRLLKRIIKA 129


>gi|15612511|ref|NP_224164.1| putative recombination protein RecB [Helicobacter pylori J99]
 gi|4156072|gb|AAD07027.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
          Length = 946

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 11/156 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148
            L +E  K Q      ++    D S  R+    I +      +++ TI AF ++I+++F 
Sbjct: 67  NLESEKEKSQNILKELEEKYHLDPSLVRNNAQKIYQRFLNAEVRISTIDAFFQSILRKFC 126

Query: 149 LEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLD 183
               ++++F +  D E  ++ + E   S L +  L+
Sbjct: 127 WFVGLSANFEVNEDTEAHQRQLNEGFLSALNNKQLE 162


>gi|124266478|ref|YP_001020482.1| DNA helicase/exodeoxyribonuclease V subunit A [Methylibium
          petroleiphilum PM1]
 gi|124259253|gb|ABM94247.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylibium
          petroleiphilum PM1]
          Length = 1086

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          +A DP RS  V A AG+GKT +LV R+LR LL  A P  +L +T T+ AA EM  R    
Sbjct: 23 VACDPRRSVVVEACAGAGKTWMLVSRILRALLDGAAPQEILAITFTRKAAGEMRER---- 78

Query: 86 ITAWSH 91
          +  W H
Sbjct: 79 LQGWLH 84


>gi|295696731|ref|YP_003589969.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912]
 gi|295412333|gb|ADG06825.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912]
          Length = 1259

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 53/192 (27%)

Query: 30  PTRSAW-----------VSANAGSGKTHILVQRVLRLLL------------------ANA 60
           PT   W           V+A AGSGKT +L +R   +L                   A  
Sbjct: 4   PTEDQWRAITAIRSDVVVTAGAGSGKTWVLTERYAAMLNGRPTLPPPEETDAPIPTGAPC 63

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  ++ +T T+AAAA+M  ++   +        +++ A  T++    P + ++  A   
Sbjct: 64  RPGEIIAITFTEAAAADMRRKIRARLR-------QLIEAGETRLL---PYEEELETA--- 110

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                       + TIH++C ++++++P EA +   F + DE ++++L+ E+ +  L   
Sbjct: 111 -----------PISTIHSYCASLIRRYPFEAGVDPDFVVLDEPEARRLLRESAQEALMEA 159

Query: 181 MLDNNEELKKAF 192
           + +    ++ A 
Sbjct: 160 LKEEEPAVRSAL 171


>gi|32267142|ref|NP_861174.1| putative recombination protein RecB [Helicobacter hepaticus ATCC
           51449]
 gi|32263195|gb|AAP78240.1| putative helicase [Helicobacter hepaticus ATCC 51449]
          Length = 971

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 9/148 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + LL   A+P  +L LT TK A+ EM HR+ + +      + +
Sbjct: 11  LKASAGSGKTFNLSLRFIYLLFQGANPHQILTLTFTKKASKEMYHRIHDYLKFLYDFTQD 70

Query: 96  ILSAEITKIQGK--KPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             + E   I     K   SD     K   +    +++    ++ TI AF  A++++F   
Sbjct: 71  KHTKEGMNIYAALIKEGLSDEFLRDKIESIYYEFIQS--NPRITTIDAFFHAVLKKFCWY 128

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLA 178
             I+SHF + +   SK  I E   STL+
Sbjct: 129 VGISSHFEVGN--VSKDEINERFLSTLS 154


>gi|290893619|ref|ZP_06556601.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071]
 gi|290556821|gb|EFD90353.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071]
          Length = 1051

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +  G+ P+ + + +   LL           + T+H+FC  I++++  EA+
Sbjct: 81  -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILEI----SNDEDIETL 207
           I   F + +  +S  + +E  +  L     ++NNE    AF+ ++E      +D ++ +L
Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184

Query: 208 ISDI 211
           IS +
Sbjct: 185 ISKL 188


>gi|326389380|ref|ZP_08210948.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200]
 gi|325994743|gb|EGD53167.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200]
          Length = 1230

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 42/193 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T  +QL  +    +  V+A AGSGKT +LV+R+++L+  + +P     LL +T T AAA+
Sbjct: 6   TYEQQLAINTRGSNLLVAAGAGSGKTAVLVERIIKLVTDDKNPVDIDKLLVVTFTNAAAS 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ E              A I+K+  + P    +S    LL   +       + TI
Sbjct: 66  EMRERIAE--------------ALISKLD-QNPEDRRLSNQLTLLNKAI-------ITTI 103

Query: 137 HAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           H+FC E +   F L  ++  +F I D+ ++               +L   E +++ F E+
Sbjct: 104 HSFCLEVVRNNFFL-IDLDPNFRIGDDTET---------------LLLKLEAVEELFEEL 147

Query: 196 LEISNDEDIETLI 208
            +  ++ED  TL+
Sbjct: 148 YQKEDNEDFLTLV 160


>gi|167748814|ref|ZP_02420941.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662]
 gi|167651784|gb|EDR95913.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662]
          Length = 1186

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 29/181 (16%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           TK +Q +  +   S  VSA AGSGKT +LV+R++  + +   P     LL +T+T AAA 
Sbjct: 4   TKEQQQVIEERGCSLLVSAAAGSGKTAVLVERIIEKISSKEEPVDVDRLLVVTYTHAAAN 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   I                K++    N+         LI  L      ++ TI
Sbjct: 64  EMKERIRRAIE--------------KKVEEDPENEH--------LIRQLSLIHKAQITTI 101

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC  +++ +  + ++  +FAI D+ Q    ++  K   L  ++ +   E   AF E +
Sbjct: 102 HSFCLNLIRDYYYKLDLDPNFAIGDQGQ----MDLMKLEVLDDVLEEAYAEQSDAFVEFI 157

Query: 197 E 197
           E
Sbjct: 158 E 158


>gi|92117527|ref|YP_577256.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91800421|gb|ABE62796.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
          Length = 1110

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS- 90
           R+  V A AGSGKT ++  RV  LL     P  +  +T T+ AA+E+  R+    T  S 
Sbjct: 19  RTLLVEAGAGSGKTSVMAGRVAVLLSKGTEPKHIAAITFTEFAASELRQRIERFTTELSL 78

Query: 91  -HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             +  ++L A    ++  +  K ++S+A       L     L   TIH F +A+++ +P 
Sbjct: 79  GRVPKDLLQAFPDGVEAAQ--KENLSRA-------LGAFDQLMCGTIHGFAQALIKPYPA 129

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           EANI     I D  +++   +E   + L S +  ++++
Sbjct: 130 EANIDPGADIVDPAEAELAFQERYDAWLRSQLSGDHDD 167


>gi|15678539|ref|NP_275654.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621583|gb|AAB85017.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 683

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 42/180 (23%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           T    V A  G+GKT I+V+RV  L+    A PS+L+ +T T+ AA E+  R+       
Sbjct: 22  TGPLLVVAGPGAGKTRIIVERVAHLIDERGAEPSSLVVITFTRKAADELKERI------- 74

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                      I ++ G+                       +++ TIH+FC  I++ +P 
Sbjct: 75  -----------IRRVGGRAEE--------------------MQISTIHSFCNRILRMYPD 103

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS-TLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
              + S+F + DEE     I E ++   L ++  +    ++  F E  E  N  D ETLI
Sbjct: 104 HHTLGSNFHVLDEENQLMFIYEHREQLGLGNVQRERFPLIQGFFSECQE--NMVDPETLI 161


>gi|312871743|ref|ZP_07731831.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a]
 gi|311092685|gb|EFQ51041.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a]
          Length = 1206

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132
           +EM  R+   I                KI+ +  N   K  ++K                
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  ++++F    N+  +F+I  ++    L++E           +N ++    F
Sbjct: 96  ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155

Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239
           Y     + D ++E   S ++          N  A   KL FF+   + +  II  +LW
Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKKLDFFYQIDINKNDIISSNLW 211


>gi|227872193|ref|ZP_03990560.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium
           sinus F0268]
 gi|227841976|gb|EEJ52239.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium
           sinus F0268]
          Length = 1283

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 24/127 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +LV+ VL L+L  NA  S+L+ +T T+AAA EM  R+ + +    HL  
Sbjct: 21  VSAAAGSGKTAVLVEHVLSLILEENASLSSLVLMTFTEAAAEEMKERIKKRLE--EHLQ- 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                       K  +K  + +     I +L T     + TIHAFC+ ++++     +I 
Sbjct: 78  ------------KGYDKRILRE-----IALLPTAN---ISTIHAFCKRLIEENYAGLSID 117

Query: 155 SHFAIAD 161
           +HF I D
Sbjct: 118 AHFRIGD 124


>gi|319401754|gb|EFV89962.1| recombination helicase AddA [Staphylococcus epidermidis FRI909]
          Length = 1218

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I +   K PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + ++L   F E+ E +S+D + +        
Sbjct: 126 PNFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175

Query: 214 NRTALKLIFFF 224
            R+ +K ++FF
Sbjct: 176 -RSIIKQLYFF 185


>gi|307748346|gb|ADN91616.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 921

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 11/131 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               E+ K+ GK   +     D+ K   L          LK+ T  AF   I++ F L  
Sbjct: 70  SECNELCKLLGKDKEELISLRDVKKEEFL-------RTELKISTFDAFFGKILRVFALNL 122

Query: 152 NITSHFAIADE 162
            ++S F +++E
Sbjct: 123 GLSSDFTMSEE 133


>gi|315930994|gb|EFV09969.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 705

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 11/131 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               E+ K+ GK   +     D+ K   L          LK+ T  AF   I++ F L  
Sbjct: 70  SECNELCKLLGKDKEELISLRDVKKEEFL-------RTELKISTFDAFFGKILRVFALNL 122

Query: 152 NITSHFAIADE 162
            ++S F +++E
Sbjct: 123 GLSSDFTMSEE 133


>gi|255282638|ref|ZP_05347193.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM
           14469]
 gi|255266931|gb|EET60136.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM
           14469]
          Length = 1237

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 17/157 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R+L +L    HP     LL +T T AAA EM  R+   I      
Sbjct: 22  VSAAAGSGKTAVLVERILSMLTDKEHPRDIDRLLIVTFTNAAAGEMKDRIRVAIE----- 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                     KI+  + +  +  +    L   +      ++ TIH+FC+ +++      +
Sbjct: 77  ---------QKIEDCRADGGEEERLLEHLQRQVSLLSNAQITTIHSFCQYVIRNHFHTID 127

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           +     +ADE + K L  +     +     +N EE +
Sbjct: 128 LDPGLHVADEGEQKLLQSDVMDKLVEEAYAENTEEFR 164


>gi|217033850|ref|ZP_03439275.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10]
 gi|216943748|gb|EEC23191.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10]
          Length = 938

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 15/163 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI--ITAWSHLS 93
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+   I    +L 
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLE 69

Query: 94  DEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           DE    +   I  +   K  +      ++A+ +    L     +++ TI AF ++I+++F
Sbjct: 70  DEKEKEKSQNILKELEEKYRLDPSFVQNRAQEIYQRFLNAE--IRISTIDAFFQSILRKF 127

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
                ++++F +   E +K   ++   S L+++   NNE+L++
Sbjct: 128 CWFVGLSANFEV--NEYTKAHQQQLNASFLSAL---NNEQLEE 165


>gi|240142707|ref|YP_002967220.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A)
           [Methylobacterium extorquens AM1]
 gi|240012654|gb|ACS43879.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A)
           [Methylobacterium extorquens AM1]
          Length = 1116

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 83/156 (53%), Gaps = 21/156 (13%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW-- 89
           RS  V A AGSGKT ++  R+  +L +   P  +  ++ T+ AA+E+  RV +++     
Sbjct: 23  RSMIVEAGAGSGKTALMSGRIALMLASGVAPGAIAAVSFTELAASELLERVGDVVARLLD 82

Query: 90  SHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
             + +E+   L   ++ +QG     +++++A   L  ++ T       TIH FC+ +++ 
Sbjct: 83  GEVPEELRLALPHGLSPLQG-----ANLAEAEARLDELVCT-------TIHGFCQRLVKP 130

Query: 147 FPLEANITSHFAIADEEQS----KKLIEEAKKSTLA 178
           +P+EA+I     +ADE ++    + L++E  +  L+
Sbjct: 131 YPVEADIDPGARVADEAEADGIFRDLLDEWLRECLS 166


>gi|157415705|ref|YP_001482961.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|157386669|gb|ABV52984.1| putative helicase [Campylobacter jejuni subsp. jejuni 81116]
          Length = 921

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 11/131 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               E+ K+ GK   +     D+ K   L          LK+ T  AF   I++ F L  
Sbjct: 70  SECNELCKLLGKDKEELISLRDVKKEEFL-------RTELKISTFDAFFGKILRVFALNL 122

Query: 152 NITSHFAIADE 162
            ++S F +++E
Sbjct: 123 GLSSDFTMSEE 133


>gi|24213666|ref|NP_711147.1| exodeoxyribonuclease V subunit beta [Leptospira interrogans serovar
           Lai str. 56601]
 gi|24194474|gb|AAN48165.1| exodeoxyribonuclease V beta chain [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 1046

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 31/131 (23%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90
           +S+++ A+AG+GKT+ +++ V+ L+L +  P T +L LT+T+ AA E+  R         
Sbjct: 10  KSSFIEASAGTGKTYTIMEIVIDLILEHKIPLTQILILTYTEKAAGELKER--------- 60

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            L  +++S+ +TK            +AR L          + + TIH FC  I++++P+E
Sbjct: 61  -LRKKLISSGLTK------------EAREL--------DQVTISTIHGFCNTILKEYPVE 99

Query: 151 ANITSHFAIAD 161
               +++ + D
Sbjct: 100 TETHTNWILTD 110


>gi|29654533|ref|NP_820225.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493]
 gi|29541800|gb|AAO90739.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493]
          Length = 1110

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R   II
Sbjct: 10  ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A +    +   ++  K       +  + + +H    +   P  L++ TI A    I  Q
Sbjct: 67  AALNEAQTQPAPSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126

Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172
            P+     +  +  + E+  +   EA
Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152


>gi|291549061|emb|CBL25323.1| recombination helicase AddA, Firmicutes type [Ruminococcus torques
           L2-14]
          Length = 1239

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 25/192 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAA 76
           T+ +Q +     R+  VSA AGSGKT +LV+R++  +     P+    LL +T+T+AAAA
Sbjct: 6   TEEQQKVIDLRDRNILVSAAAGSGKTAVLVERIISRITDENDPADVDRLLVVTYTEAAAA 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+                A I K   ++P   ++ +   L+           + TI
Sbjct: 66  EMKERI---------------GAAIEKKLEEQPGNVNLEQQSTLI-------HNASIMTI 103

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC ++++       I   F IA+E + + L+++  +  + +   + +E       +  
Sbjct: 104 HSFCLSVIRDHFHVIGIDPAFRIAEEGELRLLMQDVLEELIENFYAEGSEAFLNFVDQYG 163

Query: 197 EISNDEDIETLI 208
              ND+ IE LI
Sbjct: 164 TGRNDQKIEELI 175


>gi|212212385|ref|YP_002303321.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010795|gb|ACJ18176.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212]
          Length = 1110

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R   II
Sbjct: 10  ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A +    +   ++  K       +  + + +H    +   P  L++ TI A    I  Q
Sbjct: 67  AALNEAQTQPAPSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126

Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172
            P+     +  +  + E+  +   EA
Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152


>gi|154707778|ref|YP_001424668.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway
           5J108-111]
 gi|154357064|gb|ABS78526.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway
           5J108-111]
          Length = 1110

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R   II
Sbjct: 10  ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A +    +   ++  K       +  + + +H    +   P  L++ TI A    I  Q
Sbjct: 67  AALNEAQTQPAPSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126

Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172
            P+     +  +  + E+  +   EA
Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152


>gi|154246915|ref|YP_001417873.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154161000|gb|ABS68216.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1131

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           RS  V A AGSGKT ++  R+  +L     P  +  +T T+ AA+E+  RV E +   + 
Sbjct: 24  RSILVEAGAGSGKTAVMAGRIAAMLAEGVSPRAIAAVTFTELAASELLSRVREFV---AD 80

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKA-RHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           LSD  ++ E+     +      +S+A R  L         +   TIH FC+ +++ +P E
Sbjct: 81  LSDGKIATEL-----RVALPHGLSQAHRDNLAAASTAIDEITCSTIHGFCQRLIKPYPAE 135

Query: 151 ANITSHFAIADEEQS 165
           A+I     + D  Q+
Sbjct: 136 ADIDPGAGVMDRNQA 150


>gi|108563927|ref|YP_628243.1| putative recombination protein RecB [Helicobacter pylori HPAG1]
 gi|107837700|gb|ABF85569.1| ATP-dependent nuclease [Helicobacter pylori HPAG1]
          Length = 953

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 27/169 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +        +
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL--------K 61

Query: 96  ILSAEITKIQGKKPNKSDMSK----ARHLLITILETPGG----------LKVQTIHAFCE 141
           IL  E  + + KK    ++ K      HL  +++               +++ TI AF +
Sbjct: 62  ILQKENLENENKKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLNAEIRISTIDAFFQ 121

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +I+++F     ++++F +   E +K   ++     L+++   NNE+L++
Sbjct: 122 SILRKFCWFVGLSANFEV--NEDTKAHQQQLNDGFLSAL---NNEQLEE 165


>gi|161830545|ref|YP_001597082.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331]
 gi|161762412|gb|ABX78054.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331]
          Length = 1110

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R   II
Sbjct: 10  ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A +    +   ++  K       +  + + +H    +   P  L++ TI A    I  Q
Sbjct: 67  AALNEAQTQPAPSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126

Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172
            P+     +  +  + E+  +   EA
Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152


>gi|240138235|ref|YP_002962707.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase
           [Methylobacterium extorquens AM1]
 gi|240008204|gb|ACS39430.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase
           [Methylobacterium extorquens AM1]
          Length = 1116

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 83/156 (53%), Gaps = 21/156 (13%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW-- 89
           RS  V A AGSGKT ++  R+  +L +   P  +  ++ T+ AA+E+  RV +++     
Sbjct: 23  RSMIVEAGAGSGKTALMSGRIALMLASGVAPGAIAAVSFTELAASELLERVGDVVAHLLA 82

Query: 90  SHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
             + +E+   L   ++ +QG     +++++A   L  ++ T       TIH FC+ +++ 
Sbjct: 83  GEVPEELRLALPHGLSPLQG-----ANLAEAEARLDELVCT-------TIHGFCQRLVKP 130

Query: 147 FPLEANITSHFAIADEEQS----KKLIEEAKKSTLA 178
           +P+EA+I     +ADE ++    + L++E  +  L+
Sbjct: 131 YPVEADIDPGARVADEAEADGIFRDLLDEWLRECLS 166


>gi|268680529|ref|YP_003304960.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618560|gb|ACZ12925.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 907

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+   ++ LT T  +A EM  R+ E +    +  + 
Sbjct: 9   LEASAGSGKTFALSVRYLSLLFMGANAQKIVALTFTNKSAHEMKTRIFETLKDLENKEEL 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
              AE    Q  K  +  + +  H+L  +L+    +K+ T+ AF   I++ F L   +  
Sbjct: 69  HAIAE----QTGKSEEVLLREKEHVLRHLLQAD--IKISTLDAFFALILRHFALNVGLQP 122

Query: 156 HFAIADEEQSKKLIEE 171
            F+I +E   +KLIE+
Sbjct: 123 DFSIGEETLDEKLIEQ 138


>gi|323341189|ref|ZP_08081436.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644]
 gi|323091383|gb|EFZ34008.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644]
          Length = 1244

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 19/136 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  +        LL LT T+AAA EM  R              
Sbjct: 22  VSASAGSGKTRVLVERVVDKIKHGIDVDRLLILTFTEAAAKEMKER-------------- 67

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                I K   +  N+++    +  LI  L       + TI AFC   +Q +  +A++  
Sbjct: 68  -----IQKALREACNQTEDEHQKGFLINQLVKLNTADISTIDAFCLKFIQNYYYKASLDP 122

Query: 156 HFAIADEEQSKKLIEE 171
            F +  ++  K+L+ E
Sbjct: 123 SFRLLTDQTEKRLLRE 138


>gi|253991590|ref|YP_003042946.1| DNA-dependent helicase II [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638468|emb|CAR67090.1| dna helicase ii (ec 3.6.1.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783040|emb|CAQ86205.1| DNA helicase II [Photorhabdus asymbiotica]
          Length = 723

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 43/158 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  LL + NA P +++ +T T  AAAEM HR+  +I  
Sbjct: 24  PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMAVTFTNKAAAEMRHRIENLIGT 83

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ + T H     +++   
Sbjct: 84  --------------------------------------SQGGMWIGTFHGLAHRLLRAHH 105

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           L+AN+   F I D E   +L+    K  + ++ LD+ +
Sbjct: 106 LDANLPQDFQILDSEDQHRLL----KRIIKAMNLDDKQ 139


>gi|320539382|ref|ZP_08039051.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str.
           Tucson]
 gi|320030507|gb|EFW12517.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str.
           Tucson]
          Length = 720

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+  D +++ +SE + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLFDSLNEKQSEAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    H+L T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHVLGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   +EAN+   F I D +   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMEANLPQDFQILDSDDQLRLLK 124


>gi|162448185|ref|YP_001621317.1| DNA helicase II [Acholeplasma laidlawii PG-8A]
 gi|161986292|gb|ABX81941.1| DNA helicase, UvrD/REP type [Acholeplasma laidlawii PG-8A]
          Length = 382

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 39/178 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM- 78
            K ++L  +   R  ++ A AGSGKT ++V+R+ RL+L    P+ +LC+T T  A  EM 
Sbjct: 4   NKEQELAVTSNERCIFLIAGAGSGKTRVIVERIKRLILNGVDPNEILCITFTNKATDEMK 63

Query: 79  ----------------------SHRVLEIITAWSHLS-DEILSAEITKIQ---GKKPNKS 112
                                 SH++ ++    +  S DE+L     K      KKP   
Sbjct: 64  ERLKGYDVATHTFHGYCYQVLSSHKIFQVFEYNNEFSPDEVLKVATYKNSLKTSKKPKIY 123

Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           D  +A             L  + +  F + +++ FP   N        DE Q   L++
Sbjct: 124 DTYEAY------------LNTRNLLDFDDLMIEAFPYMGNHPFKHIFIDEFQDTNLLQ 169


>gi|149182415|ref|ZP_01860891.1| AddA [Bacillus sp. SG-1]
 gi|148849878|gb|EDL64052.1| AddA [Bacillus sp. SG-1]
          Length = 1258

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 28/184 (15%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ +L      +   LL +T T A+AAEM HR+ E +  
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIQKILDKEDGINVDELLVVTFTNASAAEMRHRIGEAL-- 84

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                ++ +SA+        PN   + K   LL           + T+H+FC  +++++ 
Sbjct: 85  -----EKAISAD--------PNSYHLRKQLSLL-------NRASISTLHSFCLEVIRKYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
              +I   F I D+ + + L +E           +  +E   +FY++++   ++  +  +
Sbjct: 125 YLIDIDPGFRILDDTEGELLRDEVLDELFEE---EYGKEDNDSFYKLVDTFTNDRSDAAL 181

Query: 209 SDII 212
            D+I
Sbjct: 182 QDMI 185


>gi|317014973|gb|ADU82409.1| putative recombination protein RecB [Helicobacter pylori
           Gambia94/24]
          Length = 946

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 17/159 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145
            L  E  K Q       ++ +  HL  ++++              +++ TI AF ++I++
Sbjct: 67  NLENEKEKSQNI---LKELEEKYHLDPSLVQNSAQKIYQRFLNAEIRISTIDAFFQSILR 123

Query: 146 QFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLD 183
           +F     ++++F +  D E  +  + E   S L S  L+
Sbjct: 124 KFCWFVGLSANFEVNEDTEAYQACLNEGFLSALNSEQLE 162


>gi|317121624|ref|YP_004101627.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885]
 gi|315591604|gb|ADU50900.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885]
          Length = 1504

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 25/139 (17%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89
           S  VSA AG+GKT +LV+R+++ LL  A P     LL +T T+AAA +M  R+ E +   
Sbjct: 39  SLLVSAAAGAGKTTVLVERIVQRLLDPADPLDVDRLLVVTFTEAAATQMKDRIRERL--- 95

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                E+  A+       +PN  DM   R L +      G   + T+H+FC  I++Q+  
Sbjct: 96  -----ELAIAQ-------RPN--DMHLRRQLALL-----GRASISTVHSFCLRIVRQYFY 136

Query: 150 EANITSHFAIADEEQSKKL 168
              +     +A E +S+ L
Sbjct: 137 RLGLDPAAKVAGEHESQLL 155


>gi|255305967|ref|ZP_05350139.1| ATP-dependent nuclease subunit A [Clostridium difficile ATCC 43255]
          Length = 1275

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++ +  +P     LL +T T AAA+EM  R+ + I      
Sbjct: 23  VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                        GK  +++  +K     + +L       + TIH+FC  +++      N
Sbjct: 77  -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIN 120

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +  +F I D+ +   L +EA    +  +  D  EE  + F  ++E   +   +  + DII
Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176


>gi|291532505|emb|CBL05618.1| recombination helicase AddA, Firmicutes type [Megamonas hypermegale
           ART12/1]
          Length = 1001

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 27/134 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           ++  V+A AGSGKT +LV+RV+ R++      + +L +T T AAAAEM  R+   IT   
Sbjct: 16  KNILVAAAAGSGKTSVLVERVIQRIVNKTCDINQILVVTFTNAAAAEMRERIASAITE-- 73

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                SD  K R L++          + T+HAFC+ I++Q+  +
Sbjct: 74  -------------------KLSDKDKERQLVLL-----NASSISTLHAFCQNIIRQYFHQ 109

Query: 151 ANITSHFAIADEEQ 164
             +   F +A+ ++
Sbjct: 110 LGLDPKFRLANPQE 123


>gi|255100077|ref|ZP_05329054.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-63q42]
          Length = 1275

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++ +  +P     LL +T T AAA+EM  R+ + I      
Sbjct: 23  VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                        GK  +++  +K     + +L       + TIH+FC  +++      N
Sbjct: 77  -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIN 120

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +  +F I D+ +   L +EA    +  +  D  EE  + F  ++E   +   +  + DII
Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176


>gi|126698625|ref|YP_001087522.1| ATP-dependent nuclease subunit A [Clostridium difficile 630]
 gi|123174482|sp|Q18AN9|ADDA_CLOD6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|115250062|emb|CAJ67882.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
           [Clostridium difficile]
          Length = 1275

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++ +  +P     LL +T T AAA+EM  R+ + I      
Sbjct: 23  VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                        GK  +++  +K     + +L       + TIH+FC  +++      N
Sbjct: 77  -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIN 120

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +  +F I D+ +   L +EA    +  +  D  EE  + F  ++E   +   +  + DII
Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176


>gi|218283946|ref|ZP_03489814.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989]
 gi|218215525|gb|EEC89063.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989]
          Length = 1036

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 33/182 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           VSA+AGSGKT +LV+R+ +L+L + H S  ++L +T TK AAAEM  R+L  +      +
Sbjct: 20  VSASAGSGKTAVLVERLCQLVLKD-HISIDSILAMTFTKDAAAEMKARLLSKLKEQPK-T 77

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D IL                        + +LET     + TI +FC +I+Q +  +  I
Sbjct: 78  DYILQQ----------------------MALLETAS---ISTIDSFCLSIVQNYYYKIPI 112

Query: 154 TSHFA--IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           +   +   A   Q++   E A K  +  + L+   +LK  F+   +   +EDI+  I DI
Sbjct: 113 SYTMSKQTASSAQTRIAFENAYKHAIQDLDLNAYTQLKMYFHSFGK--TEEDIQKYIEDI 170

Query: 212 IS 213
           ++
Sbjct: 171 LA 172


>gi|154498367|ref|ZP_02036745.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC
           29799]
 gi|150272678|gb|EDM99856.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC
           29799]
          Length = 1206

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 37/187 (19%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +LV+R+L R+          L +T+TKAAAAE+  R++E          
Sbjct: 22  VSAAAGSGKTRVLVERLLGRVEHEGLDIDRFLVITYTKAAAAELRSRIVE---------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                E+++   + P    + + + L+          ++ T+H+FC  ++++     ++ 
Sbjct: 72  -----ELSQRLARNPTDRHLRRQQTLVYKA-------QISTVHSFCAQLLRECGHMLDVN 119

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
             F + DE ++              +ML   +E+    YE  +I+ D D   L+  + + 
Sbjct: 120 PDFRLCDEGEA------------GVLMLRALDEVMDRRYE--DITPDSDFAKLVDTMSAG 165

Query: 215 RTALKLI 221
           R   +L+
Sbjct: 166 RDDSRLM 172


>gi|313632207|gb|EFR99276.1| ATP-dependent nuclease subunit A [Listeria seeligeri FSL N1-067]
          Length = 1236

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 56/216 (25%)

Query: 24  QLLASDPTRSAW----------------VSANAGSGKTHILVQRVLRLLL---ANAHPST 64
           QL+   P  S W                V+A AGSGKT +LV R++  L+   +N +   
Sbjct: 3   QLIPEKPNDSTWTDDQWKAIQADGENILVAAAAGSGKTAVLVTRIIEKLINEKSNWNVDE 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T A+AAEM  R+         L DE+          + P+ + + K   +L   
Sbjct: 63  LLIVTFTNASAAEMKFRI------GKALEDEL---------AQDPDSAHLKKQVAML--- 104

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                   + T+H+FC  I+++   EA+I  +F         +LIE  + S +   +L+N
Sbjct: 105 ----NYASISTLHSFCLEIIRKHYFEADIDPNF---------RLIEPIESSMIRDEVLEN 151

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220
             E      E   I N+ D   L+     +R+  +L
Sbjct: 152 LLE------EAYSIENNNDFFHLVESFTGDRSDTEL 181


>gi|295396964|ref|ZP_06807086.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563]
 gi|294974817|gb|EFG50522.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563]
          Length = 1287

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 20/177 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LVQR+L+ +        LL +T T+ AA+EM  R LE+         E
Sbjct: 37  VSASAGSGKTSVLVQRILQKVRRGYGVDELLVVTFTEKAASEMKER-LEVAL------QE 89

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +++ E           SD    +H L  I + P    + TI AFC+ ++Q++    ++  
Sbjct: 90  MINEE-----------SDADSRQHYLQQIAKLPQA-NISTIDAFCKQVIQRYYFLIDLDP 137

Query: 156 HFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
            +  + DE ++    E   +S    ++ + N E  +          D+ I+ LI D+
Sbjct: 138 VYRLLTDETENMMHFENVWESLKEDLLAEGNPEYLRMANYFASDRKDDKIDRLIFDL 194


>gi|284043266|ref|YP_003393606.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283947487|gb|ADB50231.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 1184

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 31/148 (20%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSH 80
           SEQ  A +      ++ANAGSGKT ++ +R +R +L      T +L +T T+ AA+E+  
Sbjct: 9   SEQRAAIEHAGGLLLTANAGSGKTSVMAERFVRAVLHEGVEVTRILAITFTEKAASELKE 68

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV     A                   +P ++  ++             G  V TIH FC
Sbjct: 69  RVRRRFEALG-----------------EPERARATE-------------GAWVSTIHGFC 98

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKL 168
             +++  PL A I   F++ DE  +++L
Sbjct: 99  ARLLRTHPLAAGIDPRFSVLDEHGARQL 126


>gi|172056768|ref|YP_001813228.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15]
 gi|251764524|sp|B1YKM8|ADDA_EXIS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|171989289|gb|ACB60211.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15]
          Length = 1183

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 39/187 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R+ + ++    P T   +L  T T AAA EM  RV+E I A    
Sbjct: 22  VSAAAGSGKTAVLVERLTQRVINQEDPLTADRILVATFTNAAAKEMKTRVIEAIEA---- 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                     KI+   P+   + K R ++          ++ TIH+FC +I+++      
Sbjct: 78  ----------KIK-VAPDDLYLKKQRQMM-------NRAQITTIHSFCLSILRENYYRIG 119

Query: 153 ITSHFAIADEEQ----SKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETL 207
           +   F IA+E +       ++EE  +S  AS           AFYE+++  ++D D + +
Sbjct: 120 LDPAFRIAEEAELLLLQDDVLEEVFESFYASA--------DPAFYELIDSYTSDRDDQAM 171

Query: 208 ISDIISN 214
           ++ +ISN
Sbjct: 172 LT-LISN 177


>gi|315658704|ref|ZP_07911574.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis
           M23590]
 gi|315496335|gb|EFU84660.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis
           M23590]
          Length = 1216

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 31/182 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +   V+A AGSGKT +LV+R++ R++  N     LL +T T  +A EM HRV + I   +
Sbjct: 24  QDVLVAAAAGSGKTAVLVERIIQRIIRDNVDVDRLLVVTFTNLSAREMKHRVEQRIQEAA 83

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            L D              PN + +   R   I I +     ++ T+H+FC  ++QQ    
Sbjct: 84  -LED--------------PNNTHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDV 121

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDEDIET 206
            ++  +F  + E ++  L+E+    TL        + L   F E+ E      ND+D  T
Sbjct: 122 LDVDPNFRTSSEAENILLLEQTIDETLEHYY----DVLNSDFIELAEQLSKDRNDDDFRT 177

Query: 207 LI 208
           +I
Sbjct: 178 II 179


>gi|269838114|ref|YP_003320342.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
 gi|269787377|gb|ACZ39520.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
          Length = 1125

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 23/193 (11%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAW 89
           R+ +V A AG+GKT +LV R++ +L  N H +   L+ +T T+ AAAE++ RV E     
Sbjct: 20  RNFFVEAGAGTGKTTVLVDRIVAIL-RNGHATVDELVVITFTRLAAAELATRVRE----- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                        +++  +       +   L   +   P   +++TIHAF   ++++ P+
Sbjct: 74  -------------RLEETRDTTESEEERARLEEALYALPRA-RIETIHAFAAGLLRERPV 119

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLI 208
           EA +   F   D+  +    +EA +  LA+++   + E  +A +  L    D   +  ++
Sbjct: 120 EAGLDPGFEEMDDLSASLAFDEAYQDWLATLLNPEDGERPEAVWRALNRGLDLRHLREVV 179

Query: 209 SDIISNRTALKLI 221
             +  +R+ L L+
Sbjct: 180 EQVHHHRSLLPLV 192


>gi|289577484|ref|YP_003476111.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9]
 gi|289527197|gb|ADD01549.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9]
          Length = 1230

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 27/150 (18%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T  +QL  +    +  V+A AGSGKT +LV+R++RL+    +P     LL +T T AAA+
Sbjct: 6   THEQQLAINTRGNNLLVAAGAGSGKTAVLVERIIRLITDKENPVDIDRLLVVTFTNAAAS 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R              I  A I+K+  + P    +S    LL           + TI
Sbjct: 66  EMRER--------------IADALISKLD-QNPEDRRLSNQLTLL-------NKATITTI 103

Query: 137 HAFC-EAIMQQFPLEANITSHFAIADEEQS 165
           H+FC E +   F L  ++  +F I D+ ++
Sbjct: 104 HSFCLEVVRNNFFL-IDLDPNFRIGDDTET 132


>gi|254974592|ref|ZP_05271064.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-66c26]
 gi|255091983|ref|ZP_05321461.1| ATP-dependent nuclease subunit A [Clostridium difficile CIP 107932]
 gi|255313717|ref|ZP_05355300.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-76w55]
 gi|255516399|ref|ZP_05384075.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-97b34]
 gi|255649498|ref|ZP_05396400.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-37x79]
 gi|260682665|ref|YP_003213950.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196]
 gi|260686264|ref|YP_003217397.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291]
 gi|260208828|emb|CBA61747.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196]
 gi|260212280|emb|CBE03030.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291]
          Length = 1275

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++ +  +P     LL +T T AAA+EM  R+ + I      
Sbjct: 23  VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                        GK  +++  +K     + +L       + TIH+FC  +++      N
Sbjct: 77  -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIN 120

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +  +F I D+ +   L +EA    +  +  D  EE  + F  ++E   +   +  + DII
Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176


>gi|39935284|ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [Rhodopseudomonas
           palustris CGA009]
 gi|39649136|emb|CAE27656.1| possible ATP-dependent exodeoxyribonuclease (subunit A)
           [Rhodopseudomonas palustris CGA009]
          Length = 1133

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 13/137 (9%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           RS  V A AGSGKT ++  R+  +L     P ++  +T T+ AA+E+  RV + +   + 
Sbjct: 23  RSILVEAGAGSGKTAVMAGRIAAMLAEGIAPKSIAAVTFTELAASELLIRVRDFV---AD 79

Query: 92  LSDEILSAE--ITKIQGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           L+   +  E  I    G  PN S +++ A  ++  I          TIH FC+ +++ +P
Sbjct: 80  LAAGTIPTELRIAFPDGLSPNHSANLAAAASVIDEI-------TCSTIHGFCQRLIKPYP 132

Query: 149 LEANITSHFAIADEEQS 165
           +EA+I    ++ D  Q+
Sbjct: 133 VEADIDPGASVMDRNQA 149


>gi|34557616|ref|NP_907431.1| putative recombination protein RecB [Wolinella succinogenes DSM
           1740]
 gi|34483333|emb|CAE10331.1| HELICASE [Wolinella succinogenes]
          Length = 905

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 20/137 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   AHPS +L LT T+ AA EM  R+ + + A     + 
Sbjct: 9   LRASAGSGKTFALTLRYLALLFKGAHPSEILTLTFTRKAALEMKERITQALVALQQGEEN 68

Query: 96  -----ILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                ++ A IT+  IQ K+           +    L+    L++ TI AF  +I+++F 
Sbjct: 69  PYLLGLVEAGITEEAIQEKRA---------EVYWRFLQA--DLRITTIDAFLHSIVRKFC 117

Query: 149 LEANITSHFAIA--DEE 163
               I   F IA  DEE
Sbjct: 118 WYIGIPHDFTIASVDEE 134


>gi|312874236|ref|ZP_07734270.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d]
 gi|311090306|gb|EFQ48716.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d]
          Length = 1206

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132
           +EM  R+   I                KI+ +  N   K  ++K                
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  ++++F    N+  +F+I  ++    L++E           +N ++    F
Sbjct: 96  ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155

Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239
           Y     + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|294507833|ref|YP_003571891.1| ATP-dependent exoDNAse [Salinibacter ruber M8]
 gi|294344161|emb|CBH24939.1| ATP-dependent exoDNAse [Salinibacter ruber M8]
          Length = 1141

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 19/160 (11%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           L A +P  + +V A AGSGKT  LV R++ L+ +      L  +T T+ AA EMS R  E
Sbjct: 31  LSAFEPDTNFFVRAAAGSGKTTALVARMVALVRSGVPVEDLTAITFTRKAAGEMSKRFYE 90

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                     E+  A+ T +  + P +  ++ A       L       + TIHAFC  ++
Sbjct: 91  ----------ELRRAQ-TALPAEGPQRRRVTAA-------LRDAQQAFIGTIHAFCARLL 132

Query: 145 QQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLD 183
           ++ P+ A++   F A  ++ + ++L + A +  L ++  D
Sbjct: 133 RERPIAADLPPGFVAGLEDREERELRDRAWQDYLQTVRAD 172


>gi|83814136|ref|YP_445923.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83755530|gb|ABC43643.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 1114

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 19/160 (11%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           L A +P  + +V A AGSGKT  LV R++ L+ +      L  +T T+ AA EMS R  E
Sbjct: 4   LSAFEPDTNFFVRAAAGSGKTTALVARMVALVRSGVPVEDLTAITFTRKAAGEMSKRFYE 63

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                     E+  A+ T +  + P +  ++ A       L       + TIHAFC  ++
Sbjct: 64  ----------ELRRAQ-TALPAEGPQRRRVTAA-------LRDAQQAFIGTIHAFCARLL 105

Query: 145 QQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLD 183
           ++ P+ A++   F A  ++ + ++L + A +  L ++  D
Sbjct: 106 RERPIAADLPPGFVAGLEDREERELRDRAWQDYLQTVRAD 145


>gi|331087018|ref|ZP_08336093.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409468|gb|EGG88911.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 25/195 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +S TK +  +     R+  VSA AGSGKT +LV+R++  L  +  P     +L +T T+A
Sbjct: 3   VSWTKEQAQVIHLRNRNILVSAAAGSGKTAVLVERIITRLTVDEPPIDVDQMLVVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ +                I K   ++P    + +   L+          +V
Sbjct: 63  AAAEMKERIRD---------------AIEKKLEEQPENVHLQRQATLI-------HNAQV 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC ++++ +    ++   F IADE + K L ++  +  L +      +       
Sbjct: 101 TTIHSFCLSVIRDYFHMIDLDPGFRIADEGELKLLRQDVLEEVLENCYTAGEQSFLDCIE 160

Query: 194 EILEISNDEDIETLI 208
                 +D+ IE +I
Sbjct: 161 SFAAGRDDKKIEEII 175


>gi|253574626|ref|ZP_04851966.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845672|gb|EES73680.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 1341

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 25/145 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R L     P +   LL  T TKAAAAEM  R+ E        
Sbjct: 31  VAAAAGSGKTAVLVERIIRKLTDREQPLSVDRLLVATFTKAAAAEMRGRITE-------- 82

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + K   K P    ++    +L       G   + T+H+FC  ++Q++     
Sbjct: 83  -------ALEKELAKDPGNEYLNHQLAML-------GRASITTLHSFCMEVIQRYYTLIP 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL 177
           +   F IA E ++  L +E  +  L
Sbjct: 129 LDPGFRIASESETALLRQEVLEELL 153


>gi|289551202|ref|YP_003472106.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180734|gb|ADC87979.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis
           HKU09-01]
          Length = 1216

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 31/182 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +   V+A AGSGKT +LV+R++ R++  N     LL +T T  +A EM HRV + I   +
Sbjct: 24  QDVLVAAAAGSGKTAVLVERIIQRIIRDNVDVDRLLVVTFTNLSAREMKHRVEQRIQEAA 83

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            L D              PN + +   R   I I +     ++ T+H+FC  ++QQ    
Sbjct: 84  -LED--------------PNNTHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDV 121

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDEDIET 206
            ++  +F  + E ++  L+E+    TL        + L   F E+ E      ND+D  T
Sbjct: 122 LDVDPNFRTSSEAENILLLEQTIDETLEHYY----DVLNSDFIELAEQLSKDRNDDDFRT 177

Query: 207 LI 208
           +I
Sbjct: 178 II 179


>gi|282600070|ref|ZP_05972885.2| DNA helicase II [Providencia rustigianii DSM 4541]
 gi|282566938|gb|EFB72473.1| DNA helicase II [Providencia rustigianii DSM 4541]
          Length = 764

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 39/147 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + NA P +++ +T T  AAAEM HR+      
Sbjct: 65  PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRI------ 118

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                         HL+ T   + GG+ + T H     +++Q  
Sbjct: 119 -----------------------------NHLIGT---SEGGMWIGTFHGLAHRLLRQHY 146

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175
           L+AN+   F I D +   +LI    K+
Sbjct: 147 LDANLPQDFQILDSDDQYRLIRRLLKA 173


>gi|238763616|ref|ZP_04624576.1| DNA helicase II [Yersinia kristensenii ATCC 33638]
 gi|238698094|gb|EEP90851.1| DNA helicase II [Yersinia kristensenii ATCC 33638]
          Length = 672

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   ++AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|225174781|ref|ZP_03728779.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1]
 gi|225169908|gb|EEG78704.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1]
          Length = 1229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 27/147 (18%)

Query: 23  EQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEM 78
           EQL A + T  +  VSA AG+GKT +LV+R++RLL    +P     LL +T T+AAAAEM
Sbjct: 8   EQLEAIETTGCNLLVSAAAGAGKTAVLVERIIRLLCHEENPLDIDRLLVVTFTEAAAAEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R              I +A   KI      + D+++   L+        G  + T+H+
Sbjct: 68  RER--------------ISAAMEEKI--AHSGRGDLARQLSLV-------NGASISTLHS 104

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS 165
           FC  I++++    ++   F +ADE ++
Sbjct: 105 FCLDIIRRYFYLLDMDPGFRVADEREA 131


>gi|205356088|ref|ZP_03222855.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345931|gb|EDZ32567.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 921

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E+ K+ GK  +K ++     +K    L T       LK+ T  AF   I++ F L 
Sbjct: 70  SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121

Query: 151 ANITSHFAIADE 162
             ++S F +++E
Sbjct: 122 LGLSSDFTMSEE 133


>gi|238760176|ref|ZP_04621323.1| DNA helicase II [Yersinia aldovae ATCC 35236]
 gi|238701612|gb|EEP94182.1| DNA helicase II [Yersinia aldovae ATCC 35236]
          Length = 720

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   ++AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|315058935|gb|ADT73264.1| Helicase [Campylobacter jejuni subsp. jejuni S3]
          Length = 921

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E+ K+ GK  +K ++     +K    L T       LK+ T  AF   I++ F L 
Sbjct: 70  SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121

Query: 151 ANITSHFAIADE 162
             ++S F +++E
Sbjct: 122 LGLSSDFTMSEE 133


>gi|312875638|ref|ZP_07735639.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b]
 gi|311088892|gb|EFQ47335.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b]
          Length = 1206

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132
           +EM  R+   I                KI+ +  N   K  ++K                
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  ++++F    N+  +F+I  ++    L++E           +N ++    F
Sbjct: 96  ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155

Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239
           Y     + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|259500614|ref|ZP_05743516.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335]
 gi|302191303|ref|ZP_07267557.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus iners
           AB-1]
 gi|259167998|gb|EEW52493.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335]
          Length = 1206

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132
           +EM  R+   I                KI+ +  N   K  ++K                
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  ++++F    N+  +F+I  ++    L++E           +N ++    F
Sbjct: 96  ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155

Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239
           Y     + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|170026218|ref|YP_001722723.1| DNA-dependent helicase II [Yersinia pseudotuberculosis YPIII]
 gi|169752752|gb|ACA70270.1| DNA helicase II [Yersinia pseudotuberculosis YPIII]
          Length = 720

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + + + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|22124304|ref|NP_667727.1| DNA-dependent helicase II [Yersinia pestis KIM 10]
 gi|45442958|ref|NP_994497.1| DNA-dependent helicase II [Yersinia pestis biovar Microtus str.
           91001]
 gi|21957076|gb|AAM83978.1|AE013639_7 DNA-dependent ATPase I and helicase II [Yersinia pestis KIM 10]
 gi|45437825|gb|AAS63374.1| DNA helicase II [Yersinia pestis biovar Microtus str. 91001]
          Length = 722

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + + + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 6   SDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 63

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 64  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+AN+   F I D +   +L++   K+
Sbjct: 86  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVKA 131


>gi|162418460|ref|YP_001605138.1| DNA-dependent helicase II [Yersinia pestis Angola]
 gi|162351275|gb|ABX85223.1| DNA helicase II [Yersinia pestis Angola]
          Length = 720

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + + + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|325912158|ref|ZP_08174556.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D]
 gi|325476108|gb|EGC79276.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D]
          Length = 1206

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132
           +EM  R+   I                KI+ +  N   K  ++K                
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  ++++F    N+  +F+I  ++    L++E           +N ++    F
Sbjct: 96  ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155

Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239
           Y     + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|157368435|ref|YP_001476424.1| DNA-dependent helicase II [Serratia proteamaculans 568]
 gi|157320199|gb|ABV39296.1| DNA helicase II [Serratia proteamaculans 568]
          Length = 723

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 7   SDLLDSLNEKQREAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPYSIMAVT 64

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 65  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+AN+   F I D +   +L++   K+
Sbjct: 87  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQFRLLKRIVKA 132


>gi|51594549|ref|YP_068740.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 32953]
 gi|108806179|ref|YP_650095.1| DNA-dependent helicase II [Yersinia pestis Antiqua]
 gi|108810289|ref|YP_646056.1| DNA-dependent helicase II [Yersinia pestis Nepal516]
 gi|145600708|ref|YP_001164784.1| DNA-dependent helicase II [Yersinia pestis Pestoides F]
 gi|153947747|ref|YP_001399206.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 31758]
 gi|153997103|ref|ZP_02022236.1| DNA helicase II [Yersinia pestis CA88-4125]
 gi|165926252|ref|ZP_02222084.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939149|ref|ZP_02227700.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011668|ref|ZP_02232566.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213517|ref|ZP_02239552.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401880|ref|ZP_02307368.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420892|ref|ZP_02312645.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426213|ref|ZP_02317966.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468817|ref|ZP_02333521.1| DNA helicase II [Yersinia pestis FV-1]
 gi|186893549|ref|YP_001870661.1| DNA-dependent helicase II [Yersinia pseudotuberculosis PB1/+]
 gi|218930844|ref|YP_002348719.1| DNA-dependent helicase II [Yersinia pestis CO92]
 gi|229837171|ref|ZP_04457336.1| DNA helicase II [Yersinia pestis Pestoides A]
 gi|229839531|ref|ZP_04459690.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229900094|ref|ZP_04515231.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900460|ref|ZP_04515589.1| DNA helicase II [Yersinia pestis Nepal516]
 gi|270488814|ref|ZP_06205888.1| DNA helicase II [Yersinia pestis KIM D27]
 gi|294505505|ref|YP_003569567.1| DNA helicase II [Yersinia pestis Z176003]
 gi|51587831|emb|CAH19434.1| DNA helicase II [Yersinia pseudotuberculosis IP 32953]
 gi|108773937|gb|ABG16456.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Nepal516]
 gi|108778092|gb|ABG12150.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Antiqua]
 gi|115349455|emb|CAL22428.1| DNA helicase II [Yersinia pestis CO92]
 gi|145212404|gb|ABP41811.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Pestoides F]
 gi|149289409|gb|EDM39487.1| DNA helicase II [Yersinia pestis CA88-4125]
 gi|152959242|gb|ABS46703.1| DNA helicase II [Yersinia pseudotuberculosis IP 31758]
 gi|165912922|gb|EDR31548.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921776|gb|EDR38973.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989437|gb|EDR41738.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205190|gb|EDR49670.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961021|gb|EDR57042.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048773|gb|EDR60181.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054732|gb|EDR64536.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|186696575|gb|ACC87204.1| DNA helicase II [Yersinia pseudotuberculosis PB1/+]
 gi|229682479|gb|EEO78566.1| DNA helicase II [Yersinia pestis Nepal516]
 gi|229686874|gb|EEO78953.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695897|gb|EEO85944.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706114|gb|EEO92123.1| DNA helicase II [Yersinia pestis Pestoides A]
 gi|262363571|gb|ACY60292.1| DNA helicase II [Yersinia pestis D106004]
 gi|262367499|gb|ACY64056.1| DNA helicase II [Yersinia pestis D182038]
 gi|270337318|gb|EFA48095.1| DNA helicase II [Yersinia pestis KIM D27]
 gi|294355964|gb|ADE66305.1| DNA helicase II [Yersinia pestis Z176003]
 gi|320013561|gb|ADV97132.1| DNA helicase II [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 720

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + + + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|317179739|dbj|BAJ57527.1| helicase [Helicobacter pylori F30]
          Length = 949

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI--ITAWSHLS 93
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+   I    +L 
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLE 69

Query: 94  DEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           DE    +   I  +   K  +      ++A+ +    L     +++ TI AF ++I+++F
Sbjct: 70  DEKEKEKSQNILKELEEKYRLNPSFVQNRAQKIYQRFLNAE--IRISTIDAFFQSILRKF 127

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
                ++++F +   E +K   ++  +S L+++  +  EEL
Sbjct: 128 CWFVGLSANFEV--NEDTKAHQQQLNESFLSALNGEQLEEL 166


>gi|304317472|ref|YP_003852617.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778974|gb|ADL69533.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 1088

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 28/147 (19%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTKAAAAEM 78
           EQL A D +++  + A AGSGKT +L +R ++LL  N  P      ++ +T T+ AA+EM
Sbjct: 21  EQLKALDISKNIALKAGAGSGKTRVLTKRYIKLL--NDIPEIKIDNIVAITFTRKAASEM 78

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + I     +  E               K    + R+ L           + TIH 
Sbjct: 79  KDRIRKEIEVMCKVDSE---------------KEKWMEFRNSL-------SFANIDTIHG 116

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS 165
           FCE I++    +A +   F I DE +S
Sbjct: 117 FCEKIIRDNFADAGVDPLFTIIDEAES 143


>gi|188528332|ref|YP_001911019.1| putative recombination protein RecB [Helicobacter pylori Shi470]
 gi|188144572|gb|ACD48989.1| helicase [Helicobacter pylori Shi470]
          Length = 949

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 19/165 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145
            L +E  K + +   K    K R L  ++++              +++ TI AF ++I++
Sbjct: 67  NLESEKEKEKSQNILKELEEKYR-LNPSLVQNSAQKIYQRFLNAEMRISTIDAFFQSILR 125

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +F     ++++F +   E +K   ++   S L+++   NNE+L++
Sbjct: 126 KFCWFVGLSANFEV--NEDTKVHQQQLNASFLSAL---NNEQLEE 165


>gi|86149295|ref|ZP_01067526.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86152901|ref|ZP_01071106.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88596029|ref|ZP_01099266.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|85840077|gb|EAQ57335.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85843786|gb|EAQ60996.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190870|gb|EAQ94842.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|284926688|gb|ADC29040.1| putative recombination protein RecB [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315930547|gb|EFV09587.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 921

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E+ K+ GK  +K ++     +K    L T       LK+ T  AF   I++ F L 
Sbjct: 70  SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121

Query: 151 ANITSHFAIADE 162
             ++S F +++E
Sbjct: 122 LGLSSDFTMSEE 133


>gi|238793575|ref|ZP_04637199.1| DNA helicase II [Yersinia intermedia ATCC 29909]
 gi|238727165|gb|EEQ18695.1| DNA helicase II [Yersinia intermedia ATCC 29909]
          Length = 720

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           G+ + T H     +++   ++AN+   F I D +   +L+    K  + ++ LD+ +
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLL----KRLVKALNLDDKQ 136


>gi|134103111|ref|YP_001108772.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003946|ref|ZP_06561919.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915734|emb|CAM05847.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 873

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 39/156 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL++    +Q  A + + S   V A AGSGKT +L  R+  LL    HP  ++ +T T  
Sbjct: 29  DLLAGLNPQQRDAVEHSGSPLLVVAGAGSGKTRVLTNRIAYLLARGVHPGQIMAITFTNK 88

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV +++                   G++ N                    + V
Sbjct: 89  AAAEMKERVADLV-------------------GRRAN-------------------AMWV 110

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            T H+ C  ++++      ++S+F+I D + S++LI
Sbjct: 111 STFHSMCVRVLRREAKTLGMSSNFSIYDADDSRRLI 146


>gi|297380712|gb|ADI35599.1| helicase [Helicobacter pylori v225d]
          Length = 949

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 15/163 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI--ITAWSHLS 93
           + A+AGSGKT  L  R L LL   A+P+ +L LT TK A AEM  R+L+   I    +L 
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPNEILTLTFTKKATAEMKERILDYLKILQKENLE 69

Query: 94  DEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           DE    +   I  +   K  +S       A+ +    L     +++ TI AF ++I+++F
Sbjct: 70  DEKEKEKSQNILKELEEKYQLSPSFVQNSAQKIYQRFLNAE--IRISTIDAFFQSILRKF 127

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
                ++++F +   E +K   ++   S L+++   NNE+L++
Sbjct: 128 CWFVGLSANFEV--NEDTKAHQQQLNASFLSAL---NNEQLEE 165


>gi|123440590|ref|YP_001004584.1| DNA-dependent helicase II [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087551|emb|CAL10332.1| DNA helicase II [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 720

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   ++AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|325912627|ref|ZP_08175010.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B]
 gi|325478048|gb|EGC81177.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B]
          Length = 1206

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132
           +EM  R+   I                KI+ +  N   K  ++K                
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  ++++F    N+  +F+I  ++    L++E           +N ++    F
Sbjct: 96  ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155

Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239
           Y     + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|332159820|ref|YP_004296397.1| DNA-dependent helicase II [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607637|emb|CBY29135.1| ATP-dependent DNA helicase UvrD/PcrA [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664050|gb|ADZ40694.1| DNA-dependent helicase II [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862567|emb|CBX72721.1| DNA helicase II [Yersinia enterocolitica W22703]
          Length = 720

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   ++AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|283476681|emb|CAY72510.1| DNA helicase II [Erwinia pyrifoliae DSM 12163]
          Length = 723

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 7   SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMAVT 64

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                        + G
Sbjct: 65  FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+AN+   F I D E   +L++   K+
Sbjct: 87  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKA 132


>gi|57238504|ref|YP_179635.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni RM1221]
 gi|218563082|ref|YP_002344861.1| putative recombination protein RecB [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|57167308|gb|AAW36087.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           RM1221]
 gi|112360788|emb|CAL35588.1| putative helicase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315927429|gb|EFV06767.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 921

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E+ K+ GK  +K ++     +K    L T       LK+ T  AF   I++ F L 
Sbjct: 70  SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121

Query: 151 ANITSHFAIADE 162
             ++S F +++E
Sbjct: 122 LGLSSDFTMSEE 133


>gi|121612796|ref|YP_001001130.1| putative recombination protein RecB [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006023|ref|ZP_02271781.1| ATP-dependent DNA helicase, UvrD/REP family protein [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249602|gb|EAQ72561.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 921

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E+ K+ GK  +K ++     +K    L T       LK+ T  AF   I++ F L 
Sbjct: 70  SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121

Query: 151 ANITSHFAIADE 162
             ++S F +++E
Sbjct: 122 LGLSSDFTMSEE 133


>gi|315653554|ref|ZP_07906474.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC
           55195]
 gi|315488916|gb|EFU78558.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC
           55195]
          Length = 428

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I                KI+ +  N          L   L       + T
Sbjct: 61  SEMKLRIKNAIR--------------NKIKEQPDN--------LFLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|308183694|ref|YP_003927821.1| putative recombination protein RecB [Helicobacter pylori PeCan4]
 gi|308065879|gb|ADO07771.1| putative recombination protein RecB [Helicobacter pylori PeCan4]
          Length = 945

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 21/165 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145
            L  E  K Q       ++ +  HL   +++              +++ TI AF ++I++
Sbjct: 67  NLENEKEKSQNI---LKELEEKYHLNPDLVQNSAQKIYQRFLNAEIRISTIDAFFQSILR 123

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +F     ++++F +   E +K   ++  +  L+++   NNE+L++
Sbjct: 124 KFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSAL---NNEQLEE 163


>gi|15646160|ref|NP_208344.1| putative recombination protein RecB [Helicobacter pylori 26695]
 gi|2314736|gb|AAD08593.1| helicase [Helicobacter pylori 26695]
          Length = 945

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 16/137 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQQE 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145
            L  E  K Q       ++ +  HL  ++++              +++ TI AF ++I++
Sbjct: 67  NLENEKEKSQNI---LKELEEKYHLDPSLVQNSAPKIYQRFLNAEIRISTIDAFFQSILR 123

Query: 146 QFPLEANITSHFAIADE 162
           +F     ++++F + ++
Sbjct: 124 KFCWFVGLSANFEVNED 140


>gi|309806227|ref|ZP_07700241.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b]
 gi|308167374|gb|EFO69539.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b]
          Length = 428

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I                KI+ +  N          L   L       + T
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDN--------LFLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|153938269|ref|YP_001389808.1| recombination helicase AddA [Clostridium botulinum F str.
           Langeland]
 gi|251764514|sp|A7GAJ8|ADDA_CLOBL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|152934165|gb|ABS39663.1| recombination helicase AddA [Clostridium botulinum F str.
           Langeland]
 gi|295317895|gb|ADF98272.1| recombination helicase AddA [Clostridium botulinum F str. 230613]
          Length = 1279

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 25/140 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V A AG+GKT +LVQR++  +L    P     LL +T T AAAAEM  R+ + I   S  
Sbjct: 23  VVAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKG 79

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            DE   +++ + Q    NKS+                   + TIH+FC  +++       
Sbjct: 80  LDEDPESKVLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNFHTME 120

Query: 153 ITSHFAIADEEQSKKLIEEA 172
           I  +F I DE +   + +EA
Sbjct: 121 IDPNFRICDETEGILMKQEA 140


>gi|259906888|ref|YP_002647244.1| DNA-dependent helicase II [Erwinia pyrifoliae Ep1/96]
 gi|224962510|emb|CAX53965.1| DNA helicase II [Erwinia pyrifoliae Ep1/96]
          Length = 720

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                        + G
Sbjct: 62  FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   L+AN+   F I D E   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLK 124


>gi|188532376|ref|YP_001906173.1| DNA-dependent helicase II [Erwinia tasmaniensis Et1/99]
 gi|188027418|emb|CAO95265.1| DNA helicase II [Erwinia tasmaniensis Et1/99]
          Length = 720

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMAVENCSPHSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                        + G
Sbjct: 62  FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   L+AN+   F I D E   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLK 124


>gi|154249408|ref|YP_001410233.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
 gi|154153344|gb|ABS60576.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
          Length = 656

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 45/179 (25%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D   +  SEQ  A  +    + V A  GSGKT ++  ++  LLL    PS +L +T T+A
Sbjct: 23  DFFKELDSEQRRAVMESNGKSVVIAGPGSGKTRVITYKIAYLLLNGVMPSEILLVTFTRA 82

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R  +I+T                    K + SDM                   
Sbjct: 83  AAREMIERA-QIVT--------------------KKDLSDMMAG---------------- 105

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            T H  C  +++++     + S+F I DEE +K L++ A+   + S      +++ KAF
Sbjct: 106 -TFHHVCNLLLRKYGSSIGLKSNFTILDEEDAKDLMKIARSRYVTS------KQMNKAF 157


>gi|238789384|ref|ZP_04633170.1| DNA helicase II [Yersinia frederiksenii ATCC 33641]
 gi|238722527|gb|EEQ14181.1| DNA helicase II [Yersinia frederiksenii ATCC 33641]
          Length = 720

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   ++AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|317011772|gb|ADU85519.1| putative recombination protein RecB [Helicobacter pylori
           SouthAfrica7]
          Length = 949

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 9/155 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE---IITAWSHL 92
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+   I+   +  
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENSE 69

Query: 93  SDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +++  S  I K   +K N +       A+ +    L     +K+ TI AF ++I+++F  
Sbjct: 70  NEKEKSQNILKELEEKYNLNPSLVQDNAKKIYQRFLNAE--IKISTIDAFFQSILRKFCW 127

Query: 150 EANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLD 183
              ++++F +  D E  ++ + E+  S L S  L+
Sbjct: 128 FVGLSANFEVNEDTEAHQQQLNESFLSALNSEQLE 162


>gi|310766136|gb|ADP11086.1| DNA helicase II [Erwinia sp. Ejp617]
          Length = 720

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                        + G
Sbjct: 62  FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   L+AN+   F I D E   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLK 124


>gi|312898123|ref|ZP_07757515.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis
           F0359]
 gi|310620791|gb|EFQ04359.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis
           F0359]
          Length = 1220

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 25/180 (13%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +D ++ T++++   +   ++  +SA AGSGKT +LV+R++R L+   +P   + ++ +T 
Sbjct: 2   VDKMAWTEAQEKAITSRNQNLLLSAAAGSGKTAVLVERIIRRLIDVDNPTDITEIMVVTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TKAAA EM  R+   +   +   DE LSA +   +  +   + +  AR            
Sbjct: 62  TKAAAGEMRERIGGALLKAAE--DETLSAAVR--ESARRQAALLPSAR------------ 105

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T HAFC+ +++      ++   F IA  E+    +E  K+S    + L   E+ +K
Sbjct: 106 --ISTFHAFCQYVLRTRFYTIDLDPQFTIAGTEE----LELLKQSVWDDVALSYYEDEEK 159


>gi|298737172|ref|YP_003729702.1| putative ATP-dependent helicase [Helicobacter pylori B8]
 gi|298356366|emb|CBI67238.1| putative ATP-dependent helicase [Helicobacter pylori B8]
          Length = 945

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 17/163 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148
            L  E  K Q      ++    D S  R+    I +      +++ TI AF ++I+++F 
Sbjct: 67  NLENEKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLNAEVRISTIDAFFQSILRKFC 126

Query: 149 LEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
               ++++F +  D +  ++ + E   S L      NNE+L++
Sbjct: 127 WFVGLSANFEVNEDTKVHQRQLNEGFLSAL------NNEQLEE 163


>gi|169335596|ref|ZP_02862789.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258334|gb|EDS72300.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1171

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 26/156 (16%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           TKS+    +   ++  +SA AG GKT IL  R++RL+L         L +T T AAA+ M
Sbjct: 4   TKSQSDAINTDNKNLLISAGAGCGKTAILTNRIIRLMLEEKTDIDKFLVVTFTNAAASGM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKVQTI 136
             ++ +++ +              KI+ K  +K      R+L   I+ LE      + T+
Sbjct: 64  KEKIRKLLYS--------------KIKEKNNDK------RYLFDQISNLEKAN---ISTL 100

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           H+FC ++++++    ++   F I D   +  L++EA
Sbjct: 101 HSFCISVIREYYHLVDVDPAFKIIDSTNANILMDEA 136


>gi|307638220|gb|ADN80670.1| putative ATP-dependent helicase [Helicobacter pylori 908]
 gi|325996814|gb|ADZ52219.1| helicase [Helicobacter pylori 2018]
 gi|325998406|gb|ADZ50614.1| putative ATP-dependent helicase [Helicobacter pylori 2017]
          Length = 946

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 23/162 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +        +
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL--------K 61

Query: 96  ILSAEITKIQGKKPNKS---DMSKARHLLITILETPGG----------LKVQTIHAFCEA 142
           IL  E  +  GK+ +++   ++ +  HL  +++               +++ TI AF ++
Sbjct: 62  ILQKENLE-SGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLNAEIRISTIDAFFQS 120

Query: 143 IMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLD 183
           I+++F     ++++F +  D E  ++ + E   S L S  L+
Sbjct: 121 ILRKFCWFVGLSANFEVNEDTEAHQRQLNEGFLSALNSEQLE 162


>gi|118444179|ref|YP_877319.1| ATP-dependent nuclease subunit A [Clostridium novyi NT]
 gi|251764519|sp|A0PY67|ADDA_CLONN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|118134635|gb|ABK61679.1| ATP-dependent nuclease subunit A [Clostridium novyi NT]
          Length = 1236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 27/134 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R           
Sbjct: 23  VSAAAGSGKTAVLVERIIKMITDIKNPVDIDRLLVVTFTNAAASEMKER----------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I K  GK+  K   SK     +T+L       + TIH+FC E I   F    
Sbjct: 72  --------IGKAIGKELTKHPKSKQLQRQLTLLNRAS---ITTIHSFCLETIRNNFHY-I 119

Query: 152 NITSHFAIADEEQS 165
           ++  +F I DE ++
Sbjct: 120 DLDPNFRIGDETET 133


>gi|309809850|ref|ZP_07703700.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169802|gb|EFO71845.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D]
          Length = 431

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I                KI+ +  N          L   L       + T
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDN--------LFLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|238750684|ref|ZP_04612183.1| DNA helicase II [Yersinia rohdei ATCC 43380]
 gi|238711074|gb|EEQ03293.1| DNA helicase II [Yersinia rohdei ATCC 43380]
          Length = 720

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   ++AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|291523612|emb|CBK81905.1| recombination helicase AddA, Firmicutes type [Coprococcus catus
           GD/7]
          Length = 1228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 37/164 (22%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89
           S  VSA AGSGKT +LV+R++RLL    HP     LL +T T AAAAEM  R+       
Sbjct: 19  SVLVSAAAGSGKTAVLVERLIRLLTDEKHPVDIERLLVVTFTNAAAAEMRERI------G 72

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L  ++L         ++P+ +   + + LL          ++ TIH+ C         
Sbjct: 73  RGLDQKLL---------EEPDHTAWIRQKLLLPCA-------QISTIHSLC--------- 107

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
              I  HF + D + S +L +EA+   L S   D  E++ + +Y
Sbjct: 108 LKTIREHFEVLDLDPSFRLGDEAELKLLKS---DVAEDVMETYY 148


>gi|239625645|ref|ZP_04668676.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519875|gb|EEQ59741.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1326

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 25/195 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ +Q +     R+  VSA AGSGKT +LV+R+++++    HP     LL +T T A
Sbjct: 3   VKWTEKQQQVIDSRNRNLLVSAAAGSGKTAVLVERIIQMISGGDHPLDIDQLLVMTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                A + K   + P         HL +     P  + +
Sbjct: 63  AAAEMRERI---------------GAAVEKKLKEHPED------EHLWLQAALIPQAM-I 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  I++      +I   F I DE +   L  +     L +   + +E       
Sbjct: 101 TTIDSFCLNIIRNHFNSLDIDPSFRIGDEGELSLLRGDVMGEMLEACYEEGDEAFAGFVE 160

Query: 194 EILEISNDEDIETLI 208
                 +D+ IE +I
Sbjct: 161 HFGRGKSDKGIEDVI 175


>gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonuclease subunit A [Bacillus licheniformis
           ATCC 14580]
 gi|52784929|ref|YP_090758.1| AddA [Bacillus licheniformis ATCC 14580]
 gi|81609244|sp|Q65LJ9|ADDA_BACLD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|52002776|gb|AAU22718.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis
           ATCC 14580]
 gi|52347431|gb|AAU40065.1| AddA [Bacillus licheniformis ATCC 14580]
          Length = 1230

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 35/172 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R++R +     P     LL +T T A+AAEM HR+      
Sbjct: 24  RDILVAAAAGSGKTAVLVERIIRKITDQERPVDVDRLLVVTFTNASAAEMKHRI------ 77

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E L  E+ +      N   +   R L +          + T+H+FC  +++++ 
Sbjct: 78  -----GEALEKELAE------NPGSLHLRRQLALL-----NKASISTLHSFCLQVIRKYY 121

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK---AFYEILE 197
              ++   F IAD+ + + L +E              EE KK   AF+E+++
Sbjct: 122 YLIDVDPAFRIADQTEGELLGDEVLDELF-------EEEYKKGNPAFFELVD 166


>gi|319646646|ref|ZP_08000875.1| AddA protein [Bacillus sp. BT1B_CT2]
 gi|317391234|gb|EFV72032.1| AddA protein [Bacillus sp. BT1B_CT2]
          Length = 1230

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 35/172 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R++R +     P     LL +T T A+AAEM HR+      
Sbjct: 24  RDILVAAAAGSGKTAVLVERIIRKITDQERPVDVDRLLVVTFTNASAAEMKHRI------ 77

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E L  E+ +      N   +   R L +          + T+H+FC  +++++ 
Sbjct: 78  -----GEALEKELAE------NPGSLHLRRQLALL-----NKASISTLHSFCLQVIRKYY 121

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK---AFYEILE 197
              ++   F IAD+ + + L +E              EE KK   AF+E+++
Sbjct: 122 YLIDVDPAFRIADQTEGELLGDEVLDELF-------EEEYKKGNPAFFELVD 166


>gi|300774389|ref|ZP_07084253.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300507033|gb|EFK38167.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 1046

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 24/185 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLL--ANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++A+AGSGKT+ LVQR+L + L   N   S   +L LT T  AA EM  R+L  +  +S 
Sbjct: 8   INASAGSGKTYALVQRLLMICLRYPNQQQSIRNILALTFTNKAANEMKERILSWLGNFS- 66

Query: 92  LSDEILSAEITKI------QGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIM 144
             D   +A++  I      QG K    D+  +++ LL  +L     L + TI  F   ++
Sbjct: 67  AKDYAENADLKNIQKAFEEQGLKITIDDLHQRSKKLLDYVLHNYSTLNIGTIDRFNSRLV 126

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN---NEELKKAFYEILEIS-- 199
           + F  E  +  +F +  E +   LIE   K      MLD    NE +  +F + ++ S  
Sbjct: 127 RSFSYELGLAKNFNLEIEAEP-FLIEAVDK------MLDQIGENETISNSFMDYVDYSLE 179

Query: 200 NDEDI 204
           N+E I
Sbjct: 180 NNERI 184


>gi|238798592|ref|ZP_04642068.1| DNA helicase II [Yersinia mollaretii ATCC 43969]
 gi|238717548|gb|EEQ09388.1| DNA helicase II [Yersinia mollaretii ATCC 43969]
          Length = 721

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   ++AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|238784730|ref|ZP_04628733.1| DNA helicase II [Yersinia bercovieri ATCC 43970]
 gi|238714326|gb|EEQ06335.1| DNA helicase II [Yersinia bercovieri ATCC 43970]
          Length = 720

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   ++AN+   F I D +   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129


>gi|210135718|ref|YP_002302157.1| putative recombination protein RecB [Helicobacter pylori P12]
 gi|210133686|gb|ACJ08677.1| ATP-dependent nuclease subunit A [Helicobacter pylori P12]
          Length = 946

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 10/134 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148
            L  E  K Q      ++    D S  R+    I +      +++ TI AF ++I+++F 
Sbjct: 67  NLENEKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLNAEIRISTIDAFFQSILRKFC 126

Query: 149 LEANITSHFAIADE 162
               ++++F + ++
Sbjct: 127 WFVGLSANFEVNED 140


>gi|308181395|ref|YP_003925523.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046886|gb|ADN99429.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 1249

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q + +    +  VSA+AGSGKT +L++R++R +LA  +   LL +T T  AA  M 
Sbjct: 8   TPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLAAKHMK 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++           +  ++  I+++    P ++  S A   L   L   G   + T+ AF
Sbjct: 68  QKL-----------ESQINKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANISTLDAF 116

Query: 140 CEAIMQQF 147
           C  ++Q++
Sbjct: 117 CLRVIQRY 124


>gi|254557326|ref|YP_003063743.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1]
 gi|254046253|gb|ACT63046.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1]
          Length = 1249

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q + +    +  VSA+AGSGKT +L++R++R +LA  +   LL +T T  AA  M 
Sbjct: 8   TPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLAAKHMK 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++           +  ++  I+++    P ++  S A   L   L   G   + T+ AF
Sbjct: 68  QKL-----------ESQINKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANISTLDAF 116

Query: 140 CEAIMQQF 147
           C  ++Q++
Sbjct: 117 CLRVIQRY 124


>gi|208435433|ref|YP_002267099.1| ATP-dependent nuclease [Helicobacter pylori G27]
 gi|208433362|gb|ACI28233.1| ATP-dependent nuclease [Helicobacter pylori G27]
          Length = 963

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 3   LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQQE 59

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145
            L  E  K Q       ++ +  HL   +++              +++ TI AF ++I++
Sbjct: 60  NLENEKEKSQNI---LKELEEKYHLDPDLVQNSAQKIYQRFLNAEIRISTIDAFFQSILR 116

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +F     ++++F +   E +K    +  +S L+++  +  EEL
Sbjct: 117 KFCWFVGLSANFEV--NEDTKAHQRQLNESFLSALNGEQLEEL 157


>gi|317010231|gb|ADU80811.1| putative recombination protein RecB [Helicobacter pylori India7]
          Length = 948

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148
            L +E  K Q      ++  + + S  ++    I +      +++ TI AF ++I+++F 
Sbjct: 67  NLESEKEKSQNILKELEEKYRLNPSFVQNSAPKIYQRFLNAEIRISTIDAFFQSILRKFC 126

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               ++++F +   E +K   ++  +S L+++  +  EEL
Sbjct: 127 WFVGLSANFEV--NENTKAHQQQLNESFLSALNGEQLEEL 164


>gi|319934767|ref|ZP_08009212.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1]
 gi|319810144|gb|EFW06506.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1]
          Length = 1203

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           S  VSA AGSGKT ILV R++ LL         L LT T+AA  EM  R          L
Sbjct: 17  SILVSAPAGSGKTKILVSRIVELLKEGYEIFDFLVLTFTQAAGNEMKQR----------L 66

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           S+E+     T I        D++   HL   IL  P    +   H FC  ++ ++    N
Sbjct: 67  SEELHQLVSTDI--------DLTLKEHLEKQILNLPHAY-MTNFHGFCNLLLMKYGYLVN 117

Query: 153 ITSHFAI 159
           +   F I
Sbjct: 118 VMPGFEI 124


>gi|300768583|ref|ZP_07078482.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493890|gb|EFK29059.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 1249

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q + +    +  VSA+AGSGKT +L++R++R +LA  +   LL +T T  AA  M 
Sbjct: 8   TPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLAAKHMK 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++           +  ++  I+++    P ++  S A   L   L   G   + T+ AF
Sbjct: 68  QKL-----------ESQINKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANISTLDAF 116

Query: 140 CEAIMQQF 147
           C  ++Q++
Sbjct: 117 CLRVIQRY 124


>gi|28379194|ref|NP_786086.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1]
 gi|81630835|sp|Q88U41|ADDA_LACPL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|28272032|emb|CAD64937.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1]
          Length = 1249

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q + +    +  VSA+AGSGKT +L++R++R +LA  +   LL +T T  AA  M 
Sbjct: 8   TPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLAAKHMK 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++           +  ++  I+++    P ++  S A   L   L   G   + T+ AF
Sbjct: 68  QKL-----------ESQINKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANISTLDAF 116

Query: 140 CEAIMQQF 147
           C  ++Q++
Sbjct: 117 CLRVIQRY 124


>gi|239636506|ref|ZP_04677508.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603]
 gi|239597861|gb|EEQ80356.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603]
          Length = 1220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 33/190 (17%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L        LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSAREMKHRV----------DQ 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I     + PN   +   R   I I +T    ++ T+H+FC  ++QQ     +I 
Sbjct: 78  RIQQASI-----EDPNNEHLKNQR---IKIHQT----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
            +F  + E ++  L+E+    T+  ++  + ++L   F ++ E  +++  +T   +II  
Sbjct: 126 PNFRTSSEAENILLLEQ----TIDEVLEQHYDKLNPDFIDLTEQLSNDRSDTQFRNII-- 179

Query: 215 RTALKLIFFF 224
               K ++FF
Sbjct: 180 ----KQLYFF 185


>gi|262375119|ref|ZP_06068353.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145]
 gi|262310132|gb|EEY91261.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145]
          Length = 1367

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 13/131 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           W+ A+AG+GKT+ L   ++R+ L   +P  ++  T T+ A AE+ +RV   +E   A+  
Sbjct: 20  WIEASAGTGKTYTLSSLMVRIFLDQYYPHQVIATTFTRKATAELKNRVRLRVEETLAYIQ 79

Query: 92  LSDEILSAEIT-KIQGK---------KPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              ++ S EIT KIQ +         K   S +  AR  L  +L     L V T+ +F +
Sbjct: 80  RHQQLNSVEITAKIQNETDPLFQQVLKDYGSRLDYARRRLRLVLNQLDELFVGTLDSFSQ 139

Query: 142 AIMQQFPLEAN 152
            ++++F  E+ 
Sbjct: 140 KLLREFAFESG 150


>gi|255534428|ref|YP_003094799.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10]
 gi|255340624|gb|ACU06737.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10]
          Length = 1064

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 18/180 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS------TLLCLTHTKAAAAEMSHRVLEIITAW 89
           ++A+AGSGKT+ LVQ +L + L   HPS       +L LT T  AA EM  R+++ +  +
Sbjct: 19  INASAGSGKTYALVQNLLVICL--KHPSQPDKIRNILALTFTNKAANEMKQRIIKWLREF 76

Query: 90  S---HLSDEILS--AEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAI 143
           S   + +++ L    +  K+QG + +   + K +R +L  +L     L + TI  F   +
Sbjct: 77  SSAEYANNQDLKNIQQKMKVQGIELSLETLHKRSRKILDYVLHNYSTLNIGTIDKFNSRL 136

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++ F  E  +  +F +  E  ++  + EA +  LA I  +N  ++  AF + +  S D +
Sbjct: 137 VRSFSYELGLAQNFNL--EINAEPYLVEAVEKMLADIGAEN--DVSDAFMDFVNYSLDNN 192


>gi|255994221|ref|ZP_05427356.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum
           ATCC 49989]
 gi|255993889|gb|EEU03978.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum
           ATCC 49989]
          Length = 1289

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 29/199 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +L+QR+  L+  + A    +L  T T AAAAE+  R+ + +T       
Sbjct: 20  VSAAAGSGKTAVLIQRLKSLVTDDGASLDEVLVATFTNAAAAELKERLAKALT------- 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITI--LETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                EI  +Q       D  K   LL+    +ET     + T H+F   ++++F   A 
Sbjct: 73  ----QEIEIVQ-------DDEKREFLLVQRKNIETAS---IGTFHSFAIDLLREFNYRAG 118

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDI 211
           I+ +F I   +QS  LI    + TL ++  +  E   ++F   L+  SND+  + +  +I
Sbjct: 119 ISKNFGIL-SQQSDALI---TRETLDAVFTEFFEAKDESFLAFLDAYSNDKSDDDIKKNI 174

Query: 212 ISNRTALKLIFFFFSYLWR 230
           I   T L+ + ++ + L R
Sbjct: 175 IEVYTKLRALPYYDAILAR 193


>gi|254780085|ref|YP_003058192.1| putative recombination protein RecB [Helicobacter pylori B38]
 gi|254001998|emb|CAX30257.1| ATP-dependent DNA helicase [Helicobacter pylori B38]
          Length = 945

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 89/168 (52%), Gaps = 27/168 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +        +
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL--------K 61

Query: 96  ILSAEITKIQGKKPNKS---DMSKARHLLITILETPGG----------LKVQTIHAFCEA 142
           IL  E  +  GK+ +++   ++ +  HL  +++               +++ TI AF ++
Sbjct: 62  ILQKENLE-SGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLNAEIRISTIDAFFQS 120

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           I+++F     ++++F +   E +K   ++  +  L+++   NNE+L++
Sbjct: 121 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSAL---NNEQLEE 163


>gi|154502322|ref|ZP_02039382.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
 gi|153796947|gb|EDN79367.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
          Length = 1194

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 29/169 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R+  VSA AGSGKT +LV+R+++ LL    P     LL +T T+AAAAEM  R+ + I  
Sbjct: 18  RNILVSAAAGSGKTAVLVERIIQRLLDERDPLDVDRLLIVTFTEAAAAEMKERIRDAIE- 76

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            + L D              P    + +   L+ +        ++ TIH+FC +++++  
Sbjct: 77  -NALED-------------TPGNVHLQRQATLIHSA-------RITTIHSFCLSVIREHF 115

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              N+   F IA+E + K L ++  +  L S      +E  +AF E  E
Sbjct: 116 HAINLDPGFRIAEEGELKLLRQDVLEEMLESCY----DEGTEAFLEFAE 160


>gi|226326684|ref|ZP_03802202.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198]
 gi|225204905|gb|EEG87259.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198]
          Length = 506

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  LL +  A P +++ +T T  AAAEM HR+ ++I        
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGT------ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           + GG+ + T H+    +++   L+AN+ 
Sbjct: 81  --------------------------------SQGGMWIGTFHSLAHRLLRAHYLDANLP 108

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
             F I D +   +LI    KS
Sbjct: 109 QDFQIIDSDDQYRLIRRIVKS 129


>gi|308185340|ref|YP_003929473.1| putative recombination protein RecB [Helicobacter pylori SJM180]
 gi|308061260|gb|ADO03156.1| putative recombination protein RecB [Helicobacter pylori SJM180]
          Length = 953

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 89/168 (52%), Gaps = 27/168 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +        +
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL--------K 61

Query: 96  ILSAEITKIQGKKPNKS---DMSKARHLLITILETPGG----------LKVQTIHAFCEA 142
           IL  E  +  GK+ +++   ++ +  HL  +++               +++ TI AF ++
Sbjct: 62  ILQKENLE-SGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLNAEIRISTIDAFFQS 120

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           I+++F     ++++F +   E +K   ++  +  L+++   NNE+L++
Sbjct: 121 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSAL---NNEQLEE 163


>gi|299138774|ref|ZP_07031952.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
 gi|298599410|gb|EFI55570.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
          Length = 1202

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 10/191 (5%)

Query: 31  TRSAW-VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           T+++W V A AGSGKT +L+QR L+LL  +    P  +L +T T+ A AE+  R+L  + 
Sbjct: 23  TKASWIVEAPAGSGKTGLLMQRYLKLLTEDGVVQPEEVLAITFTRKATAELRARILTELE 82

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
              H +  +      +   ++   + +++   L   ++E P  L+V+TI + C  I    
Sbjct: 83  KAHHETPLLDQNSTFERATREFATAVLARDAALGWELIENPQRLRVRTIDSVCAEIASTL 142

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND---EDI 204
           PL +   S  +    E ++ L   A + TL  +   ++  L  A   IL +  D    D 
Sbjct: 143 PLLSG--SGGSRTPVEDAEPLYRLAARRTLMQLG-GSDAALHTALRTIL-LHRDGSLSDC 198

Query: 205 ETLISDIISNR 215
           ETL++ +++ R
Sbjct: 199 ETLLARMLAAR 209


>gi|326336039|ref|ZP_08202215.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691836|gb|EGD33799.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 1066

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 25/142 (17%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  LV+  LRL+LA  +     +LL +T T  A  EM  RV+  +  +S   
Sbjct: 10  NASAGSGKTFTLVKSFLRLILATKNVEAYKSLLAITFTNKAVNEMKERVINKLLLFSTSD 69

Query: 94  DEILSAEITKIQGKKPNKSDM----------------SKARHLLITILETPGGLKVQTIH 137
            EI        + KKP+K  M                 +++ +L  IL    G  + TI 
Sbjct: 70  QEIQE------EDKKPSKDPMFRQLAREIGLTFEQLRERSKKVLNYILHNYAGFTIVTID 123

Query: 138 AFCEAIMQQFPLEANITSHFAI 159
            F + +++ F  +  +  +F +
Sbjct: 124 GFNQRLIRSFAFDLKLNPNFEV 145


>gi|317181241|dbj|BAJ59027.1| helicase [Helicobacter pylori F32]
          Length = 938

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 12/161 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI--ITAWSHLS 93
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+   I    +L 
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLE 69

Query: 94  DEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           DE    +   I  +   K  +      ++A+ +    L     +++ TI AF ++I+++F
Sbjct: 70  DEKEKEKSQNILKELEEKYRLDPSFVQNRAQEIYQRFLNAE--IRISTIDAFFQSILRKF 127

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
                + ++F +   E +K   ++  +S L+++  +  EEL
Sbjct: 128 CWFVGLRANFEV--NEDTKAHQQQLNESFLSALDKEQLEEL 166


>gi|290968022|ref|ZP_06559571.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781928|gb|EFD94507.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str.
           28L]
          Length = 1217

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 30/178 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ T++++   +   ++  +SA AGSGKT +LV+R++R LL   +P   + +L +T TKA
Sbjct: 1   MAWTEAQEAAMNSRGQTLLLSAAAGSGKTAVLVERLVRRLLDRQNPIDMTAVLVVTFTKA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                        +   + D  +   LL      P    +
Sbjct: 61  AAAEMRERI----------------GAALTAALEATGRPDAERQLALL------PAA-SI 97

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            T+H+FC+ +++ +    ++   F +A EE+   L    +K  L  ++L   E+ +KA
Sbjct: 98  STLHSFCQEVIRTYFYTIDLDPAFRVAGEEELSLL----RKQVLEDLLLSYYEQEEKA 151


>gi|91201897|emb|CAJ74957.1| similar to ATP-dependent DNA helicase subunit AddA [Candidatus
           Kuenenia stuttgartiensis]
          Length = 1198

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 25/170 (14%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-------LLCLTHTKA 73
           K  +L  S+  ++  ++A AG+GKT ILVQR+L LLLA+    +       ++ LT T+ 
Sbjct: 38  KIRELAVSEQHKNIVLTAGAGTGKTTILVQRILHLLLAHKSLQSEESPILKIIALTFTEK 97

Query: 74  AAAEMSHRVLE----IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           AA+EM  R++E    I+ A   +     S+++          SD+    H   + +E   
Sbjct: 98  AASEMKIRLMEELEKIVAAMKGICRPEESSQVNNF------ISDLQTTYHTTYSEIERRA 151

Query: 130 --------GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
                      + TIH+F   I++ FP+E+ +   F + +    + L E+
Sbjct: 152 VQSLADMDKAMICTIHSFAAYILRMFPIESGVAPGFTVDEGSVFEDLFEK 201


>gi|307717800|ref|YP_003873332.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM
          6192]
 gi|306531525|gb|ADN01059.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM
          6192]
          Length = 1152

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 44/75 (58%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          +Q  A +  ++A V A AGSGKT +L +R LRL+     PS +L LT T+ AAAEM  R+
Sbjct: 6  DQRRAVETEKTAVVIAGAGSGKTRVLTERYLRLVRNGVQPSRILALTFTRKAAAEMHERI 65

Query: 83 LEIITAWSHLSDEIL 97
           + I   +  S  +L
Sbjct: 66 SQGIRGLARSSHGLL 80


>gi|262040875|ref|ZP_06014101.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041764|gb|EEW42809.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 720

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  LL + N  P +++ +T T  AAAEM HR+ +++        
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           T GG+ V T H     +++   L+AN+ 
Sbjct: 81  --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 108

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 109 QDFQILDSEDQLRLLK 124


>gi|315652079|ref|ZP_07905080.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum
           DSM 3986]
 gi|315485726|gb|EFU76107.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum
           DSM 3986]
          Length = 1152

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 38/201 (18%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89
           S  VSA AGSGKT +LV+R+++ +  N +P    TLL +T T+AAAA M  +        
Sbjct: 16  SILVSAAAGSGKTAVLVERIIKKITDNENPIDVDTLLVMTFTRAAAASMKEK-------- 67

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 I +A + +++  + +  +  + +   + +       ++ T  +FC +I+++   
Sbjct: 68  ------IYNALLKEMEKHEKDTKEFKRLKEQSVLL----ASARIMTTDSFCLSIIRENID 117

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
           + +I   F++ADE +    I   K  T+  ++    E   K F E             +S
Sbjct: 118 KIDIDPAFSVADESE----ISLLKADTMDELLESEYEAASKDFME-------------LS 160

Query: 210 DIISNRTALKLIFFFFSYLWR 230
           D  +N    K I  F   L+R
Sbjct: 161 DAFANSKGDKSISEFIEKLYR 181


>gi|300714804|ref|YP_003739607.1| DNA helicase II [Erwinia billingiae Eb661]
 gi|299060640|emb|CAX57747.1| DNA helicase II [Erwinia billingiae Eb661]
          Length = 720

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SDLLDSLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMAVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                        + G
Sbjct: 62  FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           G+ + T H     +++   L+AN+   F I D E   +L+    K  + ++ LD+ +
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDDKQ 136


>gi|152972801|ref|YP_001337947.1| DNA-dependent helicase II [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|329997488|ref|ZP_08302790.1| DNA helicase II [Klebsiella sp. MS 92-3]
 gi|150957650|gb|ABR79680.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328539056|gb|EGF65095.1| DNA helicase II [Klebsiella sp. MS 92-3]
          Length = 720

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  LL + N  P +++ +T T  AAAEM HR+ +++        
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           T GG+ V T H     +++   L+AN+ 
Sbjct: 81  --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 108

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 109 QDFQILDSEDQLRLLK 124


>gi|206579213|ref|YP_002241124.1| DNA helicase II [Klebsiella pneumoniae 342]
 gi|288937764|ref|YP_003441823.1| DNA helicase II [Klebsiella variicola At-22]
 gi|206568271|gb|ACI10047.1| DNA helicase II [Klebsiella pneumoniae 342]
 gi|288892473|gb|ADC60791.1| DNA helicase II [Klebsiella variicola At-22]
          Length = 720

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  LL + N  P +++ +T T  AAAEM HR+ +++        
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           T GG+ V T H     +++   L+AN+ 
Sbjct: 81  --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 108

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 109 QDFQILDSEDQLRLLK 124


>gi|166032801|ref|ZP_02235630.1| hypothetical protein DORFOR_02516 [Dorea formicigenerans ATCC
           27755]
 gi|166027158|gb|EDR45915.1| hypothetical protein DORFOR_02516 [Dorea formicigenerans ATCC
           27755]
          Length = 190

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 34/167 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           TK +Q +     R+  VSA AGSGKT +LV+R++ +L    HP     LL +T T+AAA 
Sbjct: 6   TKQQQQVIDLRDRNILVSAAAGSGKTAVLVERIITMLTDEEHPVNVDELLIVTFTEAAAG 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+                  I K   + P    + +   L+          ++ TI
Sbjct: 66  EMKERI---------------RGAIEKALEENPENEHLKRQATLIHNA-------QITTI 103

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           H+FC ++         I  HF + D +   +  EE +   L   +LD
Sbjct: 104 HSFCLSV---------IRDHFHVIDIDPGFRTAEEGELKLLRHDVLD 141


>gi|290513159|ref|ZP_06552521.1| DNA helicase II [Klebsiella sp. 1_1_55]
 gi|289774370|gb|EFD82376.1| DNA helicase II [Klebsiella sp. 1_1_55]
          Length = 722

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  LL + N  P +++ +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           T GG+ V T H     +++   L+AN+ 
Sbjct: 83  --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 110

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 111 QDFQILDSEDQLRLLK 126


>gi|213622282|ref|ZP_03375065.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 495

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIKA 129


>gi|206603905|gb|EDZ40385.1| Putative exodeoxyribonuclease V, beta subunit [Leptospirillum sp.
           Group II '5-way CG']
          Length = 1095

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 15/169 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHL 92
           + A+AG+GKT  L    L ++L+   P  +L +T T+AAA ++  R+   LE +  W   
Sbjct: 21  IEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAAQDVRERIQKLLEDVRQWRSG 80

Query: 93  SD-EI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           S  EI   L A +  ++   P   DM + R  L+     P    +QTIH+FC+++++Q  
Sbjct: 81  SKAEILPDLRAYLETLE-TDPLLLDM-RLREALVVFDRAP----IQTIHSFCQSLLRQMS 134

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
                 ++  +  E+Q   ++ E+      S+    +  L + F  + E
Sbjct: 135 FLLGAPANLVLVPEDQP--VLYESSVRLWRSLFYGRDSRLAEFFLSVWE 181


>gi|262198052|ref|YP_003269261.1| exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
 gi|262081399|gb|ACY17368.1| Exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
          Length = 1284

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL 83
           L A DP R   V A+AG+GKT+++  RV+ LLL+   P   +L +T T+ A AE+  RV 
Sbjct: 38  LAALDPERHQVVEASAGTGKTYLIEHRVVDLLLSTDTPIEQILVVTFTEKATAELRFRVR 97

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            +I       + + +A         P+    ++AR  L   +       + TIHAFC+ +
Sbjct: 98  RLI-------ENVAAARQHTAAEDAPHWRIDAEARRKLTDAMLGFDRAAIHTIHAFCQRV 150

Query: 144 MQQ 146
           + +
Sbjct: 151 LTE 153


>gi|238892413|ref|YP_002917147.1| DNA-dependent helicase II [Klebsiella pneumoniae NTUH-K2044]
 gi|238544729|dbj|BAH61080.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 722

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  LL + N  P +++ +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           T GG+ V T H     +++   L+AN+ 
Sbjct: 83  --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 110

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 111 QDFQILDSEDQLRLLK 126


>gi|289829109|ref|ZP_06546783.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 539

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIKA 129


>gi|239826206|ref|YP_002948830.1| recombination helicase AddA [Geobacillus sp. WCH70]
 gi|239806499|gb|ACS23564.1| recombination helicase AddA [Geobacillus sp. WCH70]
          Length = 1244

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 25/130 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++ + A   P     LL +T T A+AAEM  R+ E        
Sbjct: 31  VAAAAGSGKTAVLVERIIQKITAKEDPIDVDRLLVVTFTNASAAEMKTRIAEA------- 83

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   I +   K+PN   + +   LL           + TIH+FC  +++++    +
Sbjct: 84  --------IERELDKQPNSLHLRRQLSLL-------NRASISTIHSFCLDVIRKYYYLID 128

Query: 153 ITSHFAIADE 162
           I   F IAD+
Sbjct: 129 IDPVFRIADD 138


>gi|168185692|ref|ZP_02620327.1| recombination helicase AddA [Clostridium botulinum C str. Eklund]
 gi|169296499|gb|EDS78632.1| recombination helicase AddA [Clostridium botulinum C str. Eklund]
          Length = 1236

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 27/134 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R           
Sbjct: 23  VSAAAGSGKTAVLVERIIKMITDFKNPVDIDRLLVVTFTNAAASEMKER----------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I K  GK+  K   SK     +T+L       + T+H+FC E I   F    
Sbjct: 72  --------IGKAIGKELTKHPKSKQLQRQLTLLNRAS---ITTMHSFCLETIRNNFHY-I 119

Query: 152 NITSHFAIADEEQS 165
           ++  +F I DE ++
Sbjct: 120 DLDPNFRIGDETET 133


>gi|163786810|ref|ZP_02181258.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium
           ALC-1]
 gi|159878670|gb|EDP72726.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium
           ALC-1]
          Length = 1043

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 14/151 (9%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  L +  L++L+A+ +     ++L +T T  A  EM  R++ ++ ++S  S
Sbjct: 10  NASAGSGKTFTLAKAYLKILVASKNYDQFKSVLAITFTNKAVGEMKERIINMLKSFS--S 67

Query: 94  DEILSAE------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           +E L+        I      +P K  ++K++H+L  I+   G   + TI  F   +++ F
Sbjct: 68  EESLTEPHPMFEAICDELDIEP-KFLLNKSKHILKHIIHNYGAFDISTIDGFTHRVIRTF 126

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
             + N+  +F +  E   ++L+ EA  S +A
Sbjct: 127 AHDLNLPVNFEV--ELDQERLLNEAVDSLIA 155


>gi|312872979|ref|ZP_07733039.1| ATP-dependent helicase/nuclease subunit A family protein
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091501|gb|EFQ49885.1| ATP-dependent helicase/nuclease subunit A family protein
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 201

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 30/193 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132
           +EM  R+   I                KI+ +  N   K  ++K                
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  ++++F    N+  +F+I  ++    L++E           +N ++    F
Sbjct: 96  ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155

Query: 193 YEILEISNDEDIE 205
           Y     + D ++E
Sbjct: 156 YN--NFAGDREVE 166


>gi|329920263|ref|ZP_08277047.1| hypothetical protein HMPREF9210_0804 [Lactobacillus iners SPIN
           1401G]
 gi|328936308|gb|EGG32756.1| hypothetical protein HMPREF9210_0804 [Lactobacillus iners SPIN
           1401G]
          Length = 201

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 30/193 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132
           +EM  R+   I                KI+ +  N   K  ++K                
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  ++++F    N+  +F+I  ++    L++E           +N ++    F
Sbjct: 96  ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155

Query: 193 YEILEISNDEDIE 205
           Y     + D ++E
Sbjct: 156 YN--NFAGDREVE 166


>gi|323342307|ref|ZP_08082539.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463419|gb|EFY08613.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 1040

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 26/162 (16%)

Query: 31  TRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            ++  VSA+AG+GKT +L+ R++ R++  N     +  +T T+AAA+EM  R+L      
Sbjct: 16  NQNVIVSASAGAGKTTVLIARLMKRIIRDNVRIDEVCAMTFTEAAASEMKTRLL------ 69

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP- 148
           + L+DE            + ++SD    +   I+++ET    ++ TIH+FC  I++ +  
Sbjct: 70  ASLNDEY-----------RKHESDFIAEQ---ISLVETA---QISTIHSFCLTIIKNYGY 112

Query: 149 -LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            +  N +    I D+ Q+K L  +A + T    + ++ E LK
Sbjct: 113 IIGVNPSRADNILDDAQTKLLQRQAMRKTFDQWLQNDYENLK 154


>gi|255526102|ref|ZP_05393024.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296185823|ref|ZP_06854230.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|255510218|gb|EET86536.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296049651|gb|EFG89078.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
          Length = 1112

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 20/139 (14%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           EQ  A D T++  VSA AGSGKT +L  R LRLL        +  +T T+ AA EM  R+
Sbjct: 10  EQEKAVDITKNIAVSAGAGSGKTRVLTNRYLRLLEGGLQIEEIAAITFTEKAALEMKERI 69

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + I                    +K + SD    +  +   L+      + TIH FC  
Sbjct: 70  RKAIN-------------------EKISSSDFDHKKQWM-KHLDKLNRANISTIHGFCSN 109

Query: 143 IMQQFPLEANITSHFAIAD 161
           I+++      +   F+I D
Sbjct: 110 IVRENAAFLGVDFSFSIID 128


>gi|157144441|ref|YP_001451760.1| DNA-dependent helicase II [Citrobacter koseri ATCC BAA-895]
 gi|157081646|gb|ABV11324.1| hypothetical protein CKO_00155 [Citrobacter koseri ATCC BAA-895]
          Length = 720

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  LL + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 21  PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 T GG+ V T H     +++   
Sbjct: 81  --------------------------------------TQGGMWVGTFHGLAHRLLRAHH 102

Query: 149 LEANITSHFAIADEEQSKKLIE 170
           ++AN+   F I D E   +L++
Sbjct: 103 MDANLPQDFQILDSEDQLRLLK 124


>gi|40789159|emb|CAE84140.1| putative helicase [Pseudomonas fluorescens]
          Length = 1121

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 9/172 (5%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           LA DP RS  + A AGSGKT  L  R+L  L     P  +L +T T  AAAE+  RV   
Sbjct: 33  LAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVERPEEVLAITFTNMAAAEIVERV--- 89

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I A    +  I    + ++   +  +  + + + +   +L  P  L++ T  +FC ++  
Sbjct: 90  IGALQQAATGIEPELVHELPQYRLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCASLAS 149

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           + P+ + +       D   +  +  +A   TL S+   N+ ++ +A    LE
Sbjct: 150 KTPIMSGLGGGKTTDD---ASLIYRQAILETLKSV---NDNDIPEALSNALE 195


>gi|225388060|ref|ZP_03757784.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme
           DSM 15981]
 gi|225045883|gb|EEG56129.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme
           DSM 15981]
          Length = 383

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 25/195 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ +Q +     R+  VSA AGSGKT +LV+R++R++    HP     LL +T T A
Sbjct: 3   VKWTEKQQQVIHSRNRNLLVSAAAGSGKTAVLVERIIRMISEGEHPLNIDQLLVMTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV                A + K+    P+        HL +     P   ++
Sbjct: 63  AAAEMRERV---------------GAAVDKLLTVCPDDE------HLWLQGALIPQA-QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  +++       I   F I DE +   +  +  K  L     +  E+      
Sbjct: 101 TTIDSFCLNLIRNHYSSLEIDPAFRIGDEGELALMRADVMKEMLEWHYQEGGEDFAAFVE 160

Query: 194 EILEISNDEDIETLI 208
           +     +D  IE +I
Sbjct: 161 QFGRGKSDAGIEDVI 175


>gi|291279137|ref|YP_003495972.1| exodeoxyribonuclease V subunit beta [Deferribacter desulfuricans
           SSM1]
 gi|290753839|dbj|BAI80216.1| exodeoxyribonuclease V, beta subunit [Deferribacter desulfuricans
           SSM1]
          Length = 1098

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 14/182 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE-IITAWSHL- 92
           + A+AG+GKT+ +    LRL++  +  P  +L +T T  AA E+ +R+ + ++ A+  + 
Sbjct: 19  IEASAGTGKTYTIAVIYLRLIIEKSMLPENILVVTFTVDAAEELKNRIRKFLVNAYRFIN 78

Query: 93  --SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             SD+I S     ++G K +K  +S  +  L  + E+     + TIH FC+ ++ + PLE
Sbjct: 79  EESDDIDSNLKLYLEGFKGDKKVLSHLKMALFMMDES----AIFTIHKFCKKVLVENPLE 134

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
                ++ I  E   K+LIE++       +    + ++    + I   +   D E  I D
Sbjct: 135 TKSLFNYEI--ESSDKELIEDSVYHLFRKVFYGEDPKIIDLLFRIYSPT---DFENFIED 189

Query: 211 II 212
            +
Sbjct: 190 FL 191


>gi|146343947|ref|YP_001201803.1| putative UvrD helicase [Pseudomonas fluorescens SBW25]
 gi|146187759|emb|CAM96087.1| putative UvrD helicase [Pseudomonas fluorescens SBW25]
          Length = 1121

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 9/172 (5%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           LA DP RS  + A AGSGKT  L  R+L  L     P  +L +T T  AAAE+  RV   
Sbjct: 33  LAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVERPEEVLAITFTNMAAAEIVERV--- 89

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I A    +  I    + ++   +  +  + + + +   +L  P  L++ T  +FC ++  
Sbjct: 90  IGALQQAATGIEPELVHELPQYRLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCASLAS 149

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           + P+ + +       D   +  +  +A   TL S+   N+ ++ +A    LE
Sbjct: 150 KTPIMSGLGGGKTTDD---ASLIYRQAILETLKSV---NDNDIPEALSNALE 195


>gi|293393896|ref|ZP_06638203.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582]
 gi|291423723|gb|EFE96945.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582]
          Length = 723

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL++    +Q  A + P  +  V A AGSGKT +LV R+  LL + N  P +++ +T T 
Sbjct: 8   DLLNSMNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 67

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+ ++I                                        + GG+ 
Sbjct: 68  KAAAEMRHRIEQLIGT--------------------------------------SQGGMW 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           + T H     +++   ++AN+   F I D E   +L++
Sbjct: 90  IGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 127


>gi|169349910|ref|ZP_02866848.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552]
 gi|169293478|gb|EDS75611.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552]
          Length = 1236

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 57/129 (44%), Gaps = 20/129 (15%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           S  VSA AGSGKT ILV R+L L+   N +   LL LT T AAA EM  R+   +     
Sbjct: 22  SILVSAPAGSGKTKILVNRILALIEEENYNVDELLVLTFTNAAALEMKQRLQVAL----- 76

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D+ L  +IT              + HLL      P    +   H FC  +++Q+    
Sbjct: 77  --DQRLQDDITN-----------ELSNHLLKQKQLLPKAY-ITNFHGFCSTLLKQYGYLI 122

Query: 152 NITSHFAIA 160
            I S F I 
Sbjct: 123 GINSKFDIC 131


>gi|213021539|ref|ZP_03335986.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 567

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIKA 129


>gi|307692433|ref|ZP_07634670.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ruminococcaceae
           bacterium D16]
          Length = 1206

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 23/159 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
           T+ ++ +  D      VSA AGSGKT +LV+R+L R+       +  L +T+TKAAAAE+
Sbjct: 6   TEEQRKIVDDRGGELLVSAAAGSGKTRVLVERLLDRVTGEGLDITQFLVITYTKAAAAEL 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +               E+++   + PN   + +   L+          ++ TIHA
Sbjct: 66  RGRIAQ---------------ELSQRLAQNPNDRHLRRQTTLVYQA-------QISTIHA 103

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           FC A++++     ++   F + DE +   +  +  +  L
Sbjct: 104 FCAALLRESGHLLDLDPDFRLCDEGEGAVMTAQVLQDVL 142


>gi|45658522|ref|YP_002608.1| exodeoxyribonuclease V subunit beta [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601765|gb|AAS71245.1| exodeoxyribonuclease V beta chain [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 1033

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 31/127 (24%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT+ +++ V+ L+L +  P T +L LT+T+ AA E+  R          L  
Sbjct: 1   MEASAGTGKTYTIMEIVIDLILEHKIPLTQILILTYTEKAAGELKER----------LRK 50

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           +++S+ +TK            +AR L          + + TIH FC AI++++P+E    
Sbjct: 51  KLISSGLTK------------EAREL--------DQVTISTIHGFCNAILKEYPVETETH 90

Query: 155 SHFAIAD 161
           +++ + D
Sbjct: 91  TNWILTD 97


>gi|323138754|ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242]
 gi|322396001|gb|EFX98537.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242]
          Length = 1130

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 19/140 (13%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           RS  V A AGSGKT ++  R+  +L     P ++  +T T+ AA+E+  RV E +   + 
Sbjct: 23  RSILVEAGAGSGKTAVMAGRIAAMLAEGVAPRSIAAVTFTELAASELLSRVREFV---AD 79

Query: 92  LSDEILSAEITK------IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           LS   ++ E+         Q  + N +  S A      I E    +   TIH FC+ +++
Sbjct: 80  LSAGTIATELRVALPDGLTQAHRDNLAAASAA------IDE----ITCSTIHGFCQRLIK 129

Query: 146 QFPLEANITSHFAIADEEQS 165
            +P EA+I     + D  Q+
Sbjct: 130 PYPAEADIDPGAGVMDRNQA 149


>gi|157363798|ref|YP_001470565.1| UvrD/REP helicase [Thermotoga lettingae TMO]
 gi|157314402|gb|ABV33501.1| UvrD/REP helicase [Thermotoga lettingae TMO]
          Length = 627

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 41/165 (24%)

Query: 15  DLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           D + Q   EQ  A      RS  + A  GSGKT ++  ++L LL     PS +L +T T+
Sbjct: 3   DYLQQLDDEQRTAVLKSAGRSIII-AGPGSGKTRVITYKLLHLLKTGIKPSEILLVTFTR 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM                                   + +AR L    LE   G+ 
Sbjct: 62  AAANEM-----------------------------------IDRARMLTGIDLE---GIT 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             T H  C  I++++  +  +  +F I DEE SK LI+  +   L
Sbjct: 84  AGTFHHICNLILRRYARKVGLFPNFTILDEEDSKSLIKHVRTMVL 128


>gi|227543760|ref|ZP_03973809.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
           CF48-3A]
 gi|300908827|ref|ZP_07126290.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112]
 gi|227186259|gb|EEI66330.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
           CF48-3A]
 gi|300894234|gb|EFK87592.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112]
          Length = 1392

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 23/197 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T ++    +D   +  VSA+AGSGKT +LV R + L+        +L +T T AAA  M 
Sbjct: 7   TPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNMR 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++                A + KI     N  D+   R  +   +       + TIHAF
Sbjct: 67  DKI---------------RAALQKIVQDSANPKDL---RDRMSNQINRLVAADISTIHAF 108

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYE-I 195
           C  +++++    N+   F +  +E  + L++E     ++  +  N EE    + +F E +
Sbjct: 109 CLKLIKRYYYLINLDPQFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPGRASFSELV 168

Query: 196 LEISNDEDIETLISDII 212
           L  S+D D + L +D+I
Sbjct: 169 LNFSSDRDDQGL-NDLI 184


>gi|167038394|ref|YP_001665972.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116798|ref|YP_004186957.1| recombination helicase AddA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|251764573|sp|B0KDB7|ADDA_THEP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|166857228|gb|ABY95636.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929889|gb|ADV80574.1| recombination helicase AddA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 1233

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 41/205 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++ L+    +P     LL +T T AAA+EM  R+ E + A    
Sbjct: 22  VAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAASEMRERIAEALIA---- 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
              IL            N  D   A  L  T+L       + TIH+FC E +   F L  
Sbjct: 78  ---ILDQ----------NPEDKRLANQL--TLLNKA---TITTIHSFCLEVVRNNFFL-L 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDEDIETL 207
           ++  +F I D+ ++  L  EA +     +    +++ K+ F  ++E      +D+D++ +
Sbjct: 119 DLDPNFRIGDDTETLLLQLEASEELFEEMYAKEDKD-KEGFLTLVESYGGTKDDQDLQDI 177

Query: 208 ISDIISNRTALKLIFFFFSYLWRRK 232
           +         L+L  F  S  W  K
Sbjct: 178 L---------LRLYGFVRSLPWPEK 193


>gi|308188858|ref|YP_003932989.1| DNA helicase II [Pantoea vagans C9-1]
 gi|308059368|gb|ADO11540.1| DNA helicase II [Pantoea vagans C9-1]
          Length = 720

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  +   + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SELLDGLNDNQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           G+ + T H     +++   L+A +   F I D E   +L+    K  + S+ LD+ +
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKSMNLDDKQ 136


>gi|167038872|ref|YP_001661857.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514]
 gi|300913540|ref|ZP_07130857.1| recombination helicase AddA [Thermoanaerobacter sp. X561]
 gi|307723445|ref|YP_003903196.1| recombination helicase AddA [Thermoanaerobacter sp. X513]
 gi|251764574|sp|B0K213|ADDA_THEPX RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|166853112|gb|ABY91521.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514]
 gi|300890225|gb|EFK85370.1| recombination helicase AddA [Thermoanaerobacter sp. X561]
 gi|307580506|gb|ADN53905.1| recombination helicase AddA [Thermoanaerobacter sp. X513]
          Length = 1233

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 41/205 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++ L+    +P     LL +T T AAA+EM  R+ E + A    
Sbjct: 22  VAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAASEMRERIAEALIA---- 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
              IL            N  D   A  L  T+L       + TIH+FC E +   F L  
Sbjct: 78  ---ILDQ----------NPEDKRLANQL--TLLNKA---TITTIHSFCLEVVRNNFFL-L 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDEDIETL 207
           ++  +F I D+ ++  L  EA +     +    +++ K+ F  ++E      +D+D++ +
Sbjct: 119 DLDPNFRIGDDTETLLLQLEASEELFEEMYAKEDKD-KEGFLTLVESYGGTKDDQDLQDI 177

Query: 208 ISDIISNRTALKLIFFFFSYLWRRK 232
           +         L+L  F  S  W  K
Sbjct: 178 L---------LRLYGFVRSLPWPEK 193


>gi|124514961|gb|EAY56472.1| putative exodeoxyribonuclease V, beta subunit [Leptospirillum
           rubarum]
          Length = 1101

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 15/169 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHL 92
           + A+AG+GKT  L    L ++L+   P  +L +T T+AAA ++  R+   LE +  W   
Sbjct: 21  IEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAAQDVRERIQKLLEDVRQWRSG 80

Query: 93  SD-EI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           S  EI   L A +  ++   P   DM + R  L+     P    +QTIH+FC++++ Q  
Sbjct: 81  SKAEILPDLRAYLETLE-TDPLLLDM-RLREALVVFDRAP----IQTIHSFCQSLLSQMS 134

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
                 ++  +  E+Q   ++ E+      S+    +  L + F  + E
Sbjct: 135 FLLGAPANLVLVPEDQP--VLYESSVRLWRSLFYGRDSRLAEFFLSVWE 181


>gi|218288826|ref|ZP_03493077.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240915|gb|EED08092.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 613

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 30/150 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTKAAAAEM----SHRVLEIIT 87
           VSA AGSGKT +L +R+  L  A   P      LL +T T+AAA EM      R+ E   
Sbjct: 22  VSAGAGSGKTAVLAERIASL--AEEDPKLRMDELLVMTFTEAAAEEMRARIGRRLAERAA 79

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            W    D   SA+  +              R L   + +     ++ TIH+FC ++++  
Sbjct: 80  EWEKAGD---SAKARRF-------------RRLAQRVQDA----QISTIHSFCLSLLRDH 119

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            +EA +   F +   E+   L+ EA ++TL
Sbjct: 120 AVEAGLVPGFRVLSGEEDAVLLREAAQATL 149


>gi|182412468|ref|YP_001817534.1| UvrD/REP helicase [Opitutus terrae PB90-1]
 gi|177839682|gb|ACB73934.1| UvrD/REP helicase [Opitutus terrae PB90-1]
          Length = 1109

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 14/171 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT+ L  R +RLL   A P  ++ LT T+ AA E    +L  +   +  +  
Sbjct: 9   ILASAGSGKTYALTNRFVRLLALGAAPERIVALTFTRKAAGEFFDEILNKLARAASDAAY 68

Query: 96  I--LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
              L+AEI      +P     ++   LL  +++    L++ TI  F   I + FPLE  +
Sbjct: 69  ARQLAAEI-----GRPAAMGTAEFLALLRRMVDAMHRLRLGTIDGFFARIARNFPLELGL 123

Query: 154 TSHFAIADE-----EQSKKLIEEAKKST--LASIMLDNNEELKKAFYEILE 197
              F + +E     E+S+ L +  ++ T  LA    +  E  K+A + + E
Sbjct: 124 AGEFELLEEHAARMERSRVLRQLFERPTDGLADAQREFIEAFKRATFGVEE 174


>gi|270264259|ref|ZP_06192526.1| DNA helicase II [Serratia odorifera 4Rx13]
 gi|270041908|gb|EFA15005.1| DNA helicase II [Serratia odorifera 4Rx13]
          Length = 723

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 7   SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 64

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 65  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   ++AN+   F I D +   +L++   K+
Sbjct: 87  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQFRLLKRIVKA 132


>gi|284029231|ref|YP_003379162.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836]
 gi|283808524|gb|ADB30363.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836]
          Length = 773

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  LL A +AHP ++L +T T  AAAEM  RV+E++   + L  
Sbjct: 48  VVAGAGSGKTRVLTRRIAYLLAARDAHPGSILAITFTNKAAAEMRERVVELVGPRAKL-- 105

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I+++      I+
Sbjct: 106 ------------------------------------MWVSTFHSSCVRILRRDIKRFGIS 129

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D+  S++L+
Sbjct: 130 STFSIYDDTDSRRLM 144


>gi|313201054|ref|YP_004039712.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312440370|gb|ADQ84476.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 1141

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 11/161 (6%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           + QEH    D  S+ ++ +L       S  V A AG+GKT +L QR L+LL     P  +
Sbjct: 11  ALQEHLLAQDDESRRRALEL------ESFIVEAPAGAGKTELLTQRYLKLLTTVREPEEI 64

Query: 66  LCLTHTKAAAAEMSHRVLE-IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           + +T T  AAAEM  R+L+ ++ A S         + T   G+   +    +  HL    
Sbjct: 65  IAITFTNKAAAEMRARILDSLLMAGSGERPPQPHKQKTFALGQDALQHAAERGWHL---- 120

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
           LE P  L++ TI +    + +Q PL +   +  A+ ++  +
Sbjct: 121 LENPARLRIFTIDSLSSHLARQMPLMSRFGAQPAVTEDASA 161


>gi|154174808|ref|YP_001407581.1| putative recombination protein RecB [Campylobacter curvus 525.92]
 gi|112803782|gb|EAU01126.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter curvus
           525.92]
          Length = 933

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 32/206 (15%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           R   + A+AGSGKT  L  R + L+L+ A+ + ++ LT TK AA EM  RV+E       
Sbjct: 3   RYLALKASAGSGKTFALSVRFIALILSGANIAEIVALTFTKKAANEMKERVVETFLNLEK 62

Query: 92  LSDEILS-AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              E+ +  EI ++   K     ++     +   L++   LK+ T  +F   I++QF L 
Sbjct: 63  KPSELAAIREILELGEDKI----LALRDERMADFLQSD--LKIGTFDSFFTGILRQFSLN 116

Query: 151 ANITSHFAIADE---EQSKKLIEEAKKS-----TLASIMLDNNEELKKAFYEILE----- 197
             +++ F+++ +    Q +K +E+  +      +LA  ++   E+ + +F+E LE     
Sbjct: 117 LGLSADFSVSSDLTNLQRQKFVEKISRDPSLLRSLAEFIV-AAEKSQNSFFETLERFYEN 175

Query: 198 -----------ISNDEDIETLISDII 212
                        NDE + T + +++
Sbjct: 176 FDSVKADKDAKFPNDEAVRTALGNLL 201


>gi|325509678|gb|ADZ21314.1| ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
           (helicase and exonuclease domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 1250

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 27/131 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+ + I      
Sbjct: 23  VAAAAGSGKTAVLVERIVKIITNEENPVDIDRLLVVTFTNAAASEMRERIGDAI------ 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   + K+  + PN   + K   L+       G  K+ TIH+FC + I   F +  
Sbjct: 77  --------VNKL-CENPNSRVIQKQLALI-------GKSKITTIHSFCLDVIKNNFHM-L 119

Query: 152 NITSHFAIADE 162
           ++   F + DE
Sbjct: 120 DLDPDFRVGDE 130


>gi|304398155|ref|ZP_07380030.1| DNA helicase II [Pantoea sp. aB]
 gi|304354441|gb|EFM18813.1| DNA helicase II [Pantoea sp. aB]
          Length = 720

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  +   + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SELLDGLNDNQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           G+ + T H     +++   L+A +   F I D E   +L+    K  + S+ LD+ +
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKSMNLDDKQ 136


>gi|290477108|ref|YP_003470021.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii
           SS-2004]
 gi|289176454|emb|CBJ83263.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii
           SS-2004]
          Length = 721

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 43/152 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  LL + NA P +++ +T T  +AAEM HR+  +I        
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLLSVENASPFSIMAVTFTNKSAAEMRHRIENLIGT------ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           + GG+ + T H+    +++   L+AN+ 
Sbjct: 81  --------------------------------SQGGMWIGTFHSLAHRLLRFHHLDANLP 108

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             F I D E   +LI    K  + ++ LD+ +
Sbjct: 109 QDFQILDSEDQHRLI----KRIIKAMNLDDKQ 136


>gi|283787510|ref|YP_003367375.1| DNA helicase II [Citrobacter rodentium ICC168]
 gi|282950964|emb|CBG90641.1| DNA helicase II [Citrobacter rodentium ICC168]
          Length = 720

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           G+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD+ +
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLMKAMNLDDKQ 136


>gi|148543293|ref|YP_001270663.1| recombination helicase AddA [Lactobacillus reuteri DSM 20016]
 gi|184152703|ref|YP_001841044.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112]
 gi|227364360|ref|ZP_03848453.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
           MM2-3]
 gi|325683559|ref|ZP_08163075.1| exonuclease RexA [Lactobacillus reuteri MM4-1A]
 gi|251764530|sp|A5VHK2|ADDA_LACRD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764531|sp|B2G532|ADDA_LACRJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|148530327|gb|ABQ82326.1| Recombination helicase AddA [Lactobacillus reuteri DSM 20016]
 gi|183224047|dbj|BAG24564.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112]
 gi|227070673|gb|EEI09003.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
           MM2-3]
 gi|324977909|gb|EGC14860.1| exonuclease RexA [Lactobacillus reuteri MM4-1A]
          Length = 1392

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 22/192 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T ++    +D   +  VSA+AGSGKT +LV R + L+        +L +T T AAA  M 
Sbjct: 7   TPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNMR 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++                A + KI     N  D+   R  +   +       + TIHAF
Sbjct: 67  DKI---------------RAALQKIVQDSANPKDL---RDRMSNQINRLAAADISTIHAF 108

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYE-I 195
           C  +++++    ++   F +  +E  + L++E     ++  +  N EE    K +F E +
Sbjct: 109 CLKLIKRYYYLIDLDPQFRLLTDETERLLLQEDVWHEVSEELYRNAEEKVSGKASFSELV 168

Query: 196 LEISNDEDIETL 207
           L  S+D D + L
Sbjct: 169 LNFSSDRDDQGL 180


>gi|317494833|ref|ZP_07953244.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917158|gb|EFV38506.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 720

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL++    +Q  A + P  +  V A AGSGKT +LV R+  LL + N  P +++ +T T 
Sbjct: 5   DLLNSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+                                    HL+ T   + GG+ 
Sbjct: 65  KAAAEMRHRI-----------------------------------EHLIGT---SQGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T H     +++   L+AN+   F I D +   +L++   K+
Sbjct: 87  IGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRIVKA 129


>gi|156935862|ref|YP_001439778.1| DNA-dependent helicase II [Cronobacter sakazakii ATCC BAA-894]
 gi|156534116|gb|ABU78942.1| hypothetical protein ESA_03745 [Cronobacter sakazakii ATCC BAA-894]
          Length = 720

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L++  N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLMMVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|209876554|ref|XP_002139719.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris
           RN66]
 gi|209555325|gb|EEA05370.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris
           RN66]
          Length = 985

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 12/150 (8%)

Query: 23  EQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           EQ  A D  P  S  + A  GSGKT  +  R+++ L+    P  +L LT TK AA E+  
Sbjct: 54  EQKKAVDVPPESSLLIVAGPGSGKTATITARIIKFLIEGYTP--ILALTFTKKAANELKS 111

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R   I  A+S  S + +S E TK    + + + +SK  + + ++  T   L + TIH+FC
Sbjct: 112 R---INVAYSS-SLKSISIESTK----RNSVNHISKNSYNISSLSLTDKDLFIGTIHSFC 163

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             +++Q+     + S   +AD+E   K+++
Sbjct: 164 WKLLKQYGTAIGLPSKIEVADKEMMLKILK 193


>gi|283956857|ref|ZP_06374330.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791583|gb|EFC30379.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 921

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L     + +L LT TK AA EM  R++E   A+ +L  E
Sbjct: 10  LEASAGSGKTFALSVRFVALILKGVRINEILALTFTKKAANEMQKRIIE---AFLNLEKE 66

Query: 96  ILSA---EITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             ++   E+ K+ GK  +K ++     +K    L T       LK+ T  AF   I++ F
Sbjct: 67  NKTSECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVF 118

Query: 148 PLEANITSHFAIADE 162
            L   ++S F +++E
Sbjct: 119 ALNLGLSSDFTMSEE 133


>gi|227114721|ref|ZP_03828377.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 720

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------DHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|15895530|ref|NP_348879.1| ATP-dependent exoDNAse beta subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|81529946|sp|Q97GV3|ADDA_CLOAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|15025265|gb|AAK80219.1|AE007727_3 ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
           (helicase and exonuclease domains) [Clostridium
           acetobutylicum ATCC 824]
          Length = 1252

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 27/131 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+ + I      
Sbjct: 25  VAAAAGSGKTAVLVERIVKIITNEENPVDIDRLLVVTFTNAAASEMRERIGDAI------ 78

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   + K+  + PN   + K   L+       G  K+ TIH+FC + I   F +  
Sbjct: 79  --------VNKL-CENPNSRVIQKQLALI-------GKSKITTIHSFCLDVIKNNFHM-L 121

Query: 152 NITSHFAIADE 162
           ++   F + DE
Sbjct: 122 DLDPDFRVGDE 132


>gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
 gi|148842716|gb|EDL57089.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
          Length = 1171

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 29/162 (17%)

Query: 20  TKSEQLLASDPTR--SAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAA 74
           T ++Q  A+  TR  S  +SA AG GKT +L QR L+L+   A P  L   + +T T+ A
Sbjct: 6   TYTDQQAAAINTRDVSIALSAGAGCGKTFVLTQRFLKLIEPGAPPDRLSHIVAITFTERA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ E                + +++   P + +  +A   +I  L++    ++ 
Sbjct: 66  AREMRDRIRETC--------------LDQLKNCPPEEVNHWQA---VIRGLDS---ARIS 105

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQS----KKLIEEA 172
           TIH+FC +I++   + A +  HF + ++  S    +K++ EA
Sbjct: 106 TIHSFCTSILRSHAVSARLDPHFGLLEQGTSDTFLRKVVHEA 147


>gi|253690332|ref|YP_003019522.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756910|gb|ACT14986.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 720

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------DHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|167553866|ref|ZP_02347610.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205321791|gb|EDZ09630.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 720

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|16762183|ref|NP_457800.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143672|ref|NP_807014.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161539|ref|ZP_03347249.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425413|ref|ZP_03358163.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649574|ref|ZP_03379627.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865062|ref|ZP_03387181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25290775|pir||AG0918 DNA helicase II [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504486|emb|CAD07941.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139307|gb|AAO70874.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 720

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|322646964|gb|EFY43466.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|323227583|gb|EGA11739.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 720

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|253682207|ref|ZP_04863004.1| recombination helicase AddA [Clostridium botulinum D str. 1873]
 gi|253561919|gb|EES91371.1| recombination helicase AddA [Clostridium botulinum D str. 1873]
          Length = 1232

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 27/134 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+ + I      
Sbjct: 23  VSAAAGSGKTAVLVERIIKMITDLKNPVDIDRLLVVTFTNAAASEMKERIAKAI------ 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                        GK+  K   S+     +T+L       + TIH+FC E I   F    
Sbjct: 77  -------------GKELTKHPRSRQLQRQLTLLNRAS---ITTIHSFCLETIKNNFHY-I 119

Query: 152 NITSHFAIADEEQS 165
           ++   F I DE ++
Sbjct: 120 DLDPSFRIGDETET 133


>gi|116328993|ref|YP_798713.1| exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330399|ref|YP_800117.1| exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121737|gb|ABJ79780.1| Exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124088|gb|ABJ75359.1| Exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 1054

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 31/134 (23%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90
           +S ++ A+AG+GKT+ +++ V  L+  +  P T +L LT+T+ AA E+  R         
Sbjct: 10  KSCFIEASAGTGKTYTIMEIVKDLIGEHGIPLTQILILTYTEKAAGELKER--------- 60

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            L  +++++++TK            +AR L          + + TIH FC  I+Q++P+E
Sbjct: 61  -LRKKLIASDLTK------------EAREL--------DQVTISTIHGFCNMILQEYPVE 99

Query: 151 ANITSHFAIADEEQ 164
               S + + D ++
Sbjct: 100 TETPSKWILTDSKE 113


>gi|43295|emb|CAA25043.1| unnamed protein product [Escherichia coli K-12]
          Length = 258

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 129


>gi|326629622|gb|EGE35965.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|161505541|ref|YP_001572653.1| DNA-dependent helicase II [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866888|gb|ABX23511.1| hypothetical protein SARI_03706 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|16767221|ref|NP_462836.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993889|ref|ZP_02574982.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197263905|ref|ZP_03163979.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|17865684|sp|Q05311|UVRD_SALTY RecName: Full=DNA helicase II
 gi|6960251|gb|AAF33441.1| 98% identity with E. coli DNA helicase (UVRD) (SP:P03018); contains
           similarity to Pfam family PF00580 (UvrD/REP helicase),
           score=812.9, E=1.2e-240, N=1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16422515|gb|AAL22795.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197242160|gb|EDY24780.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205328129|gb|EDZ14893.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249074|emb|CBG26935.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996230|gb|ACY91115.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160466|emb|CBW19996.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915069|dbj|BAJ39043.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225469|gb|EFX50526.1| ATP-dependent DNA helicase UvrD/PcrA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132298|gb|ADX19728.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|311281508|ref|YP_003943739.1| DNA helicase II [Enterobacter cloacae SCF1]
 gi|308750703|gb|ADO50455.1| DNA helicase II [Enterobacter cloacae SCF1]
          Length = 732

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N+ P +++ +T
Sbjct: 16  SYLLDSLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENSSPYSIMAVT 73

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 74  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   L+AN+   F I D E   +L++   K+
Sbjct: 96  GMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKA 141


>gi|260583800|ref|ZP_05851548.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC
           700633]
 gi|260158426|gb|EEW93494.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC
           700633]
          Length = 1244

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 19/127 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV R++  +    +  +LL +T T+AAA EM  R+             
Sbjct: 28  VSASAGSGKTKVLVDRIMGYIEDGVNIDSLLIVTFTEAAAKEMKERLR------------ 75

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                 T ++     ++D++K +H+ I  L       + TIH+FC  +++++   + +  
Sbjct: 76  ------TNLEKAITKETDITK-KHMYIKQLSLLPNATISTIHSFCMKVIRRYFYLSQLDP 128

Query: 156 HFAIADE 162
            F++ +E
Sbjct: 129 VFSLLNE 135


>gi|205354488|ref|YP_002228289.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274269|emb|CAR39288.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|37528453|ref|NP_931798.1| DNA-dependent helicase II [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787891|emb|CAE17008.1| DNA helicase II [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 43/158 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  LL +  A P +++ +T T  AAAEM HR+  +I  
Sbjct: 21  PRTNMLVLAGAGSGKTRVLVHRIAWLLSVEKASPFSVMAVTFTNKAAAEMRHRIENLIGT 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ + T H     +++   
Sbjct: 81  --------------------------------------SQGGMWIGTFHGLAHRLLRAHH 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           L+AN+   F I D E   +L+    K  + ++ LD+ +
Sbjct: 103 LDANLPQDFQILDSEDQNRLL----KRIIKAMNLDDKQ 136


>gi|56415805|ref|YP_152880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62182420|ref|YP_218837.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161617070|ref|YP_001591035.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168233884|ref|ZP_02658942.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168238404|ref|ZP_02663462.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168244640|ref|ZP_02669572.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168263159|ref|ZP_02685132.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168822679|ref|ZP_02834679.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194444550|ref|YP_002043181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451500|ref|YP_002047963.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470536|ref|ZP_03076520.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194734777|ref|YP_002116880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197364735|ref|YP_002144372.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198245946|ref|YP_002217880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388338|ref|ZP_03214950.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204930325|ref|ZP_03221302.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|207859153|ref|YP_002245804.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224585766|ref|YP_002639565.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912954|ref|ZP_04656791.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|56130062|gb|AAV79568.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130053|gb|AAX67756.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161366434|gb|ABX70202.1| hypothetical protein SPAB_04903 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403213|gb|ACF63435.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194409804|gb|ACF70023.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456900|gb|EDX45739.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194710279|gb|ACF89500.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197096212|emb|CAR61809.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197288763|gb|EDY28138.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940462|gb|ACH77795.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199605436|gb|EDZ03981.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204320729|gb|EDZ05931.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205332069|gb|EDZ18833.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336527|gb|EDZ23291.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340965|gb|EDZ27729.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205348080|gb|EDZ34711.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206710956|emb|CAR35324.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470294|gb|ACN48124.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|320088361|emb|CBY98121.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322613028|gb|EFY09979.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617384|gb|EFY14284.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625624|gb|EFY22446.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627047|gb|EFY23840.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631237|gb|EFY28000.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638270|gb|EFY34969.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642794|gb|EFY39381.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322650351|gb|EFY46764.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656358|gb|EFY52652.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657583|gb|EFY53853.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665994|gb|EFY62175.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666733|gb|EFY62910.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671024|gb|EFY67154.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679269|gb|EFY75321.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681673|gb|EFY77700.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686000|gb|EFY81988.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716913|gb|EFZ08484.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323192626|gb|EFZ77854.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196492|gb|EFZ81642.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203756|gb|EFZ88777.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205369|gb|EFZ90343.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210738|gb|EFZ95614.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215906|gb|EGA00639.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221399|gb|EGA05817.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323231768|gb|EGA15879.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236183|gb|EGA20260.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239580|gb|EGA23628.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244324|gb|EGA28332.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249579|gb|EGA33491.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250329|gb|EGA34215.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256536|gb|EGA40267.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259766|gb|EGA43399.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265174|gb|EGA48672.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268397|gb|EGA51869.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625668|gb|EGE32013.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|308064321|gb|ADO06208.1| putative recombination protein RecB [Helicobacter pylori Sat464]
          Length = 949

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 14/137 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +     L  E
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145
            L +E  K + +   K    K R L  + ++              +++ TI AF ++I++
Sbjct: 67  NLESEKEKEKSQNILKELEEKYR-LNPSFVQNSAQKIYQRFLNAEIRISTIDAFFQSILR 125

Query: 146 QFPLEANITSHFAIADE 162
           +F     ++++F + ++
Sbjct: 126 KFCWFVGLSANFEVNED 142


>gi|307132967|ref|YP_003884983.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937]
 gi|306530496|gb|ADN00427.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+     +Q  A   TRS   V A AGSGKT +LV R+  LL + N  P +++ +T T 
Sbjct: 5   DLLDSLNDKQRDAVAATRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+           D++L                             + GG+ 
Sbjct: 65  KAAAEMRHRI-----------DQLLGT---------------------------SQGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T H     +++   L+A +   F I D E   +L++   K+
Sbjct: 87  IGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKA 129


>gi|327441306|dbj|BAK17671.1| ATP-dependent exoDNAse beta subunit [Solibacillus silvestris
           StLB046]
          Length = 1239

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 38/186 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           VSA AGSGKT +L++R+++ +LA          LL +T T A+AAEM +R+ E       
Sbjct: 29  VSAAAGSGKTAVLIERLIQKMLAPEDKRIDVDELLVVTFTNASAAEMRNRMAEA------ 82

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                    + K   + PN   + +   LL          ++ T+H+FC +I +++    
Sbjct: 83  ---------LEKELAQNPNNQFLRRQLSLL-------NKAQISTLHSFCLSICREYAYTI 126

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISD 210
           ++   F +A  E++  L ++        +++D    L+KA+   +E +   E++ TLI  
Sbjct: 127 DLDPGFRLASTEEASLLQDD--------VLMDV---LEKAYRGDMEALFTKEELYTLIDS 175

Query: 211 IISNRT 216
             S+R+
Sbjct: 176 FASDRS 181


>gi|168467634|ref|ZP_02701471.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195629989|gb|EDX48649.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|197247460|ref|YP_002148876.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211163|gb|ACH48560.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124


>gi|327395987|dbj|BAK13409.1| DNA helicase II UvrD [Pantoea ananatis AJ13355]
          Length = 720

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SELLDGLNDKQRKAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                        + G
Sbjct: 62  FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   L+A +   F I D E   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124


>gi|229828348|ref|ZP_04454417.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM
           14600]
 gi|229792942|gb|EEP29056.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM
           14600]
          Length = 1315

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 91/184 (49%), Gaps = 18/184 (9%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   VSA AGSGKT +LV+R++R+L     P     LL +T T+AAA EM  ++   I  
Sbjct: 19  RDLLVSAAAGSGKTAVLVERIIRMLTDPDAPLDVDQLLVVTFTRAAAHEMKEKIRRAI-- 76

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E ++   +++      K+ +S  +  L  +       ++ TI +FC  +++   
Sbjct: 77  -----QEAVNEARSQLDPTDRQKALLSHLQRQLTLVHSA----QITTIDSFCAYVVRNHF 127

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            E ++   F IA+E + + + +E     +  +M ++ E   +AF +++++      +  +
Sbjct: 128 NEIDLEPDFRIAEEGEIRLIAQE----VMDQLMDEHYEMEDQAFIDLVDLYARRGKDDAL 183

Query: 209 SDII 212
           +D++
Sbjct: 184 ADML 187


>gi|322834927|ref|YP_004214954.1| DNA helicase II [Rahnella sp. Y9602]
 gi|321170128|gb|ADW75827.1| DNA helicase II [Rahnella sp. Y9602]
          Length = 720

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL +    P +++ +T
Sbjct: 4   SDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                        + G
Sbjct: 62  FTNKAAAEMRHRIDQLIGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   L+AN+   F I D +   +LI+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQIRLIK 124


>gi|315187403|gb|EFU21159.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 1149

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 38/60 (63%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          +Q  A +  ++A V A AGSGKT +L +R LRL+     PS +L LT T+ AAAEM  R+
Sbjct: 6  DQRRAVETEKTAVVIAGAGSGKTRVLTERYLRLVKNGMQPSRILALTFTRKAAAEMHERI 65


>gi|167034115|ref|YP_001669346.1| UvrD/REP helicase [Pseudomonas putida GB-1]
 gi|166860603|gb|ABY99010.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 1061

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 31/151 (20%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           SD  R  ++SA AGSGKT+ L + + + L +    P  ++  T T+ AAAE+  RV    
Sbjct: 2   SDNPRITFISAGAGSGKTYRLTELLYQELTSQQVQPEGIIATTFTRKAAAELRERVR--- 58

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              SHL D          +G+    S M +AR              + T+++ C  +++ 
Sbjct: 59  ---SHLLD----------KGQVGLASAMGQAR--------------IGTVNSLCGQLLEH 91

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           F  EA +     + +EEQ+K L+ +A  S L
Sbjct: 92  FAFEAGMPPQQRVLEEEQAKVLLNQAVDSVL 122


>gi|81428521|ref|YP_395521.1| ATP-dependent exonuclease, subunit A (N terminal fragment),
           authentic frameshift [Lactobacillus sakei subsp. sakei
           23K]
 gi|123564300|sp|Q38X69|ADDA_LACSS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|78610163|emb|CAI55212.1| ATP-dependent exonuclease, subunit A (N terminal fragment),
           authentic frameshift [Lactobacillus sakei subsp. sakei
           23K]
          Length = 890

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 31/195 (15%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q           VSA+AGSGKT +LV RV++ +L      TLL +T T+AAA EM 
Sbjct: 10  TPSQQAAVDHDGHDILVSASAGSGKTSVLVARVIQKILKGTDVDTLLVVTFTEAAATEMR 69

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +   S  + E    +  + Q                ++++ T    ++ T+HAF
Sbjct: 70  QRIQAALRDASEKATEPAVKQRLRQQ----------------LSLVPTA---QISTLHAF 110

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  +++QF        ++ I  +   + L + A++  LA  +    + +++AFY    + 
Sbjct: 111 CLKVIKQF--------YYVIDRDPVFRLLSDTAERLLLADQVW---QRVREAFYNHEYVK 159

Query: 200 NDEDIETLISDIISN 214
            +E  +TL  ++  N
Sbjct: 160 ENEQ-DTLFYELAQN 173


>gi|302874683|ref|YP_003843316.1| recombination helicase AddA [Clostridium cellulovorans 743B]
 gi|307690704|ref|ZP_07633150.1| recombination helicase AddA [Clostridium cellulovorans 743B]
 gi|302577540|gb|ADL51552.1| recombination helicase AddA [Clostridium cellulovorans 743B]
          Length = 1287

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 27/130 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----LLCLTHTKAAAAEMSHRVLEIITAWSH 91
           V+A AGSGKT +LV+R++  L++N    T    LL +T TKAAAAEM  R+       + 
Sbjct: 26  VAAAAGSGKTAVLVERIIE-LVSNKEAKTDIDKLLVVTFTKAAAAEMRERI------GNA 78

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L+++I             N  D    R L++          + T+H+FC+++++ +  + 
Sbjct: 79  LAEKI-----------SENPDDTHLHRQLVLL-----NKANITTMHSFCQSLIKNYFHKL 122

Query: 152 NITSHFAIAD 161
           +I   F I D
Sbjct: 123 DIDPAFRIGD 132


>gi|229822911|ref|ZP_04448981.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271]
 gi|229787724|gb|EEP23838.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271]
          Length = 1311

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 23/180 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA+AGSGKT +L++R+L  LL + A+   LL  T T+AAA+EM  R+            
Sbjct: 32  VSASAGSGKTTVLIERILNHLLTHYANMDQLLVSTFTEAAASEMKARME----------- 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   +++      +D ++  HL+  +   P    ++T+H+FC  ++QQ+    +  
Sbjct: 81  -------NRLKQAVNQTADRAEQAHLVSQLQLLPAS-HIRTLHSFCLQVIQQYFYIIDFD 132

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---NDEDIETLISDI 211
             F +  +E  K L+ +     L   +  + +  +K F+ + + S   +D+ +  LI D+
Sbjct: 133 PSFRLLTDETQKSLLYQEVWQELMIDLAQDPDWQEKLFHLLAQFSPGPSDQGLYQLILDL 192


>gi|94677005|ref|YP_588596.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220155|gb|ABF14314.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 646

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 45/176 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E +  S P  +  V A AGSGKT +L  R+  LL + N  PS++L +T
Sbjct: 4   SHLLDSLNNKQKEAV--SAPLGNILVLAGAGSGKTRVLTHRIAWLLAVENNPPSSILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM +R+  I+                               +H        P 
Sbjct: 62  FTNKAATEMYYRIKNIL------------------------------GKH--------PC 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           G+ + T H+    I++   +EAN+   F I D E   KL+    K  +  + LD N
Sbjct: 84  GMWIGTFHSLAYRILRIHYIEANLPKDFHIIDSEDQHKLL----KRLIRYLNLDEN 135


>gi|154244732|ref|YP_001415690.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154158817|gb|ABS66033.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1107

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT ++  RV  LL++ A P ++  +T T+ AA+ +  RV   +       D+
Sbjct: 23  VEAAAGTGKTALMAGRVTMLLMSGAEPRSIAAITFTELAASALGARVHRYV-------DD 75

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L+  + K   +          R +L         L   TIHAFC+ I+  + +EA+I  
Sbjct: 76  LLAGRVPKPLREALPDGLTDAQRRILSEAAGKLDELTATTIHAFCQTIICSYAVEADIDP 135

Query: 156 HFAIAD 161
              I D
Sbjct: 136 GARILD 141


>gi|309805609|ref|ZP_07699651.1| ATP-dependent deoxyribonuclease subunit A domain protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165047|gb|EFO67288.1| ATP-dependent deoxyribonuclease subunit A domain protein
           [Lactobacillus iners LactinV 09V1-c]
          Length = 144

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 28/159 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132
           +EM  R+   I                KI+ +  N   K  ++K                
Sbjct: 61  SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           + TI +FC  ++++F    N+  +F+I  ++    L++E
Sbjct: 96  ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKE 134


>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 876

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 49/211 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++   N+ PS +LC+T T  A
Sbjct: 7   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +         EIT                              ++
Sbjct: 67  CKEMSDRVMKIVGGEAK--------EIT------------------------------IR 88

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  K++I +       S ++  N +++K   
Sbjct: 89  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCKEVINKLSYYYATSNLMATNMQIQKVID 148

Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215
                 A  E LE    ++ +T+I +I   R
Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 179


>gi|331268546|ref|YP_004395038.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925]
 gi|329125096|gb|AEB75041.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925]
          Length = 1244

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 27/134 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+ + I      
Sbjct: 34  VSAAAGSGKTAVLVERIIKMITDLKNPVDIDRLLVVTFTNAAASEMKERIAKAI------ 87

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                        GK+  K   S+     +T+L       + TIH+FC E I   F    
Sbjct: 88  -------------GKELTKHPKSRQLQRQLTLLNRAS---ITTIHSFCLETIKNNFHY-I 130

Query: 152 NITSHFAIADEEQS 165
           ++   F I DE ++
Sbjct: 131 DLDPSFRIGDETET 144


>gi|194467461|ref|ZP_03073448.1| recombination helicase AddA [Lactobacillus reuteri 100-23]
 gi|194454497|gb|EDX43394.1| recombination helicase AddA [Lactobacillus reuteri 100-23]
          Length = 1392

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 22/192 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T ++    +D   +  VSA+AGSGKT +LV R + L+        +L +T T AAA  M 
Sbjct: 7   TPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNMR 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++                A + KI     N  D+   R  +   +       + TIHAF
Sbjct: 67  DKI---------------RAALQKIVQDSANPKDL---RDRMSNQINRLAAADISTIHAF 108

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYE-I 195
           C  +++++    ++   F +  +E  + L++E     ++  +  N EE    + +F E +
Sbjct: 109 CLKLIKRYYYLIDLDPQFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPGRASFSELV 168

Query: 196 LEISNDEDIETL 207
           L  S+D D + L
Sbjct: 169 LNFSSDRDDQGL 180


>gi|291085881|ref|ZP_06354319.2| DNA helicase II [Citrobacter youngae ATCC 29220]
 gi|291069706|gb|EFE07815.1| DNA helicase II [Citrobacter youngae ATCC 29220]
          Length = 738

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 22  SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAVT 79

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +I+                                        + G
Sbjct: 80  FTNKAAAEMRHRIGQIMGT--------------------------------------SQG 101

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147


>gi|255655059|ref|ZP_05400468.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-23m63]
 gi|296451046|ref|ZP_06892788.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08]
 gi|296880601|ref|ZP_06904563.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07]
 gi|296260053|gb|EFH06906.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08]
 gi|296428555|gb|EFH14440.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07]
          Length = 1275

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 29/180 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++ +  +P     LL +T T AAA+EM  R+ + I      
Sbjct: 23  VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                        GK  +++  +K     + +L       + TIH+FC  +++      +
Sbjct: 77  -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIS 120

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +  +F I D+ +   L +EA    +  +  D  EE  + F  ++E   +   +  + DII
Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176


>gi|323943785|gb|EGB39880.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Escherichia coli
           H120]
          Length = 228

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 129


>gi|302385434|ref|YP_003821256.1| recombination helicase AddA [Clostridium saccharolyticum WM1]
 gi|302196062|gb|ADL03633.1| recombination helicase AddA [Clostridium saccharolyticum WM1]
          Length = 1229

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 25/149 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           I  T+ ++ +     R+  VSA AGSGKT +LV+R++R++     P     LL +T TKA
Sbjct: 3   ICWTEEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITEGESPLRIDQLLVMTFTKA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RVL+ +       DE L         + P+ +      HL +     P   ++
Sbjct: 63  AADEMRERVLKAV-------DEKLV--------ENPDSA------HLQMQAAMIPYA-QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADE 162
            TI +FC  +++    + +I   F + DE
Sbjct: 101 TTIDSFCLGLIRDHYNKLDIDPAFRVGDE 129


>gi|261415282|ref|YP_003248965.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
            subsp. succinogenes S85]
 gi|261371738|gb|ACX74483.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
            subsp. succinogenes S85]
 gi|302327939|gb|ADL27140.1| ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain
            protein [Fibrobacter succinogenes subsp. succinogenes
            S85]
          Length = 1655

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 19/100 (19%)

Query: 36   VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
            V A  GSGKTH+LV +V  LL +  A P ++LCLT+T+AA  E+  R+ ++         
Sbjct: 1079 VGAGPGSGKTHLLVHKVASLLWIEEAKPDSILCLTYTRAACRELKKRLFDLAGPLAAKVN 1138

Query: 86   ITAWSHLSDEILSAEITKIQGKKP---NKSD-MSKARHLL 121
            IT +  L+  IL      +QG K    N  D +SKA  LL
Sbjct: 1139 ITTFHSLAFSILG-----VQGNKKALENADDVVSKAAELL 1173


>gi|224476068|ref|YP_002633674.1| putative ATP-dependent nuclease subunit A [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|251764540|sp|B9DIS2|ADDA_STACT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|222420675|emb|CAL27489.1| putative ATP-dependent nuclease, subunit A [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 1220

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L        LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                 I K   + P+ + +   R   + I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---EKRIQKASLEDPSNTHLKNQR---VKIHQA----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++     EL  AF ++ E +S+D   E L      
Sbjct: 126 PNFRTSSEAENILLLEQ----TIDEVLEKYYAELNPAFIDLSEQLSSDRSDERL------ 175

Query: 214 NRTALKLIFFF 224
            R  +K +++F
Sbjct: 176 -RQIIKSVYYF 185


>gi|320178104|gb|EFW53084.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella boydii ATCC 9905]
          Length = 720

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++++                                       + G
Sbjct: 62  FTNKAAAEMRHRIGQLMST--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|188026352|ref|ZP_02961779.2| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827]
 gi|188020076|gb|EDU58116.1| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827]
          Length = 723

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 39/147 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + +A P +++ +T T  AAAEM HR+ ++I +
Sbjct: 24  PRTNLLVLAGAGSGKTRVLVHRIAWLMAVEHASPFSIMAVTFTNKAAAEMRHRINQLIGS 83

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ + T H     +++Q  
Sbjct: 84  --------------------------------------SEGGMWIGTFHGLAHRLLRQHY 105

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175
           L+A +   F I D +   +LI    K+
Sbjct: 106 LDAGLPQDFQILDSDDQYRLIRRLLKA 132


>gi|237727929|ref|ZP_04558410.1| DNA helicase II [Citrobacter sp. 30_2]
 gi|226910378|gb|EEH96296.1| DNA helicase II [Citrobacter sp. 30_2]
          Length = 738

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 22  SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAVT 79

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +I+                                        + G
Sbjct: 80  FTNKAAAEMRHRIGQIMGT--------------------------------------SQG 101

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147


>gi|75760177|ref|ZP_00740235.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492341|gb|EAO55499.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 757

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|332169838|gb|AEE19093.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1046

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 28/165 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++A+AGSGKT+ LV++ +  LL +   +    LL +T T  A AEM +RVL+ +    H 
Sbjct: 10  LNASAGSGKTYSLVKQYITTLLKSNDANKFRHLLAITFTNKAVAEMKNRVLDTLKNIGHY 69

Query: 93  SDEILSAEITKIQGKKPNKSD-------------MSKARHLLITILETPGGLKVQTIHAF 139
                     +   KKP+  D             + KA+ +L  IL       + TI   
Sbjct: 70  ----------EPGNKKPDMIDDLVSSSGLSEDVVIKKAKEILNRILHNYAAFDIVTIDTL 119

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
              I++ F  + NI+S F ++ ++  K L  +A  + +A + +D+
Sbjct: 120 THRIIRTFAKDLNISSSFEVSLDQ--KTLNAQAVDALIAKVGIDD 162


>gi|89901667|ref|YP_524138.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89346404|gb|ABD70607.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 1165

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAA 76
           +A DP RS  V A AG+GKT +LV R++R LL             P  +L +T TK AA+
Sbjct: 25  IACDPRRSVAVEACAGAGKTWMLVSRIVRALLDGVDASSGELRVQPHEILAITFTKRAAS 84

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGK------KPNKSDMSKARHLLITILETPGG 130
           EM  R+ + +  ++      L  E+T ++G        P      +   L   IL +   
Sbjct: 85  EMRERLYQWLAEFAVADRATLLKELT-LRGVLDKNELHPPSVLPEQLSKLYQNILRSGRQ 143

Query: 131 LKVQTIHAFCEAIMQQFPL 149
           ++V+T H++  A+++  PL
Sbjct: 144 VQVRTFHSWFAALLRSAPL 162


>gi|47567601|ref|ZP_00238312.1| reticulocyte binding protein [Bacillus cereus G9241]
 gi|47555796|gb|EAL14136.1| reticulocyte binding protein [Bacillus cereus G9241]
          Length = 1241

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLINEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|309807505|ref|ZP_07701464.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
 gi|308169255|gb|EFO71314.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
          Length = 491

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 35/215 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA+EM  R+   I         
Sbjct: 2   VSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAASEMKLRIKNAIK-------- 53

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  KI+ +  N          L   L       + TI +FC  ++++F    N+  
Sbjct: 54  ------NKIKEQPDN--------LFLKQQLAKVDIANISTIDSFCLEVIRKFYYVINLDP 99

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS-- 213
           +F+I  ++    L++E           +N ++    FY     + D ++E   S ++   
Sbjct: 100 NFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN--NFAGDREVEAARSMLLELY 157

Query: 214 -------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
                  N  A   +L FF+   + +  II  +LW
Sbjct: 158 YVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 192


>gi|256819097|ref|YP_003140376.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
 gi|256580680|gb|ACU91815.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
          Length = 1060

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 12/144 (8%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT+ LV+  LR++L +  P     LL +T T  A  EM +R++E++  +S   
Sbjct: 12  NASAGSGKTYSLVKAYLRIILGSKQPDLFRQLLAITFTNKAVFEMKNRIIELLGVFS--E 69

Query: 94  DEILS---AEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           D++L+   A  T++  +   P++   +++   L  IL       + TI  F   +++ F 
Sbjct: 70  DKMLTKPHAMFTELAKELNLPDEELRTRSAKALEHILHNYAAFNISTIDGFNHQLIRHFS 129

Query: 149 LEANITSHFAIADEEQSKKLIEEA 172
            + ++   F +  +  SK L+E A
Sbjct: 130 QDLHLNPFFEV--QLDSKALLERA 151


>gi|260596037|ref|YP_003208608.1| DNA-dependent helicase II [Cronobacter turicensis z3032]
 gi|260215214|emb|CBA27073.1| DNA helicase II [Cronobacter turicensis z3032]
          Length = 736

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L++  N  P +++ +T
Sbjct: 20  SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLMMVENCSPYSIMAVT 77

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 78  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 99

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 100 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 145


>gi|49480014|ref|YP_035378.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|81613917|sp|Q6HM43|ADDA_BACHK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|49331570|gb|AAT62216.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|184154513|ref|YP_001842853.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956]
 gi|251764528|sp|B2GEY4|ADDA_LACF3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|183225857|dbj|BAG26373.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956]
          Length = 1337

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 37/172 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----LLANAHPST------L 65
           + + +K ++   +D  +   VSA+AGSGKT +LV+RV++L    L  +A PS       +
Sbjct: 2   VFTPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDI 61

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA  M  R+   +      +DE + A++               AR  L  I 
Sbjct: 62  LMVTFTTDAAKNMRDRIRRRLVG---ATDEHMKAQV---------------ARLALANI- 102

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
                    TIH+FCE +++++    ++   F + D+ + + L E+A ++TL
Sbjct: 103 --------STIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQATL 146


>gi|218896177|ref|YP_002444588.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842]
 gi|251764501|sp|B7IL84|ADDA_BACC2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|218544151|gb|ACK96545.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|52144188|ref|YP_082640.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
 gi|81689028|sp|Q63EM2|ADDA_BACCZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|51977657|gb|AAU19207.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|332178959|gb|AEE14648.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796]
          Length = 1040

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 22/131 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA----NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS- 90
           VSA+AGSGKT+ L  R  + LL+    N + S ++ LT TK AA EM  R+LE +   S 
Sbjct: 25  VSASAGSGKTYTLCMRFCQFLLSKCIQNNNLSNIIALTFTKNAANEMKQRILEWLKRISL 84

Query: 91  -HLSD-------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             LS+       E+LS    +I         ++++  L+  I       +V TI +F   
Sbjct: 85  GLLSEDDKNNLIELLSLPFNEI---------VTRSEKLIDLIFNNFYEFQVSTIDSFMSK 135

Query: 143 IMQQFPLEANI 153
           I +    E NI
Sbjct: 136 IFKVMAFETNI 146


>gi|283953895|ref|ZP_06371425.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794674|gb|EFC33413.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 392

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 15/134 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + ++AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +  
Sbjct: 10  LESSAGSGKTFALSVRFVALILKGAKINEILALTFTKKAANEMQKRIVETFLNLEKENKT 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPG------GLKVQTIHAFCEAIMQQFPL 149
               E+ K+         + K++  LI++ +T         LK+ T  AF   I++ F L
Sbjct: 70  SECNELCKL---------LDKSKKELISLRDTKKEEFLRTELKISTFDAFFGKILRVFAL 120

Query: 150 EANITSHFAIADEE 163
              ++S F +++E+
Sbjct: 121 NLGLSSDFTMSEEK 134


>gi|169343377|ref|ZP_02864381.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str.
           JGS1495]
 gi|169298463|gb|EDS80549.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str.
           JGS1495]
          Length = 1271

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 36/214 (16%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           TK ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+
Sbjct: 6   TKEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAAS 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+                  I+K   K P+   + +   LL           + T+
Sbjct: 66  EMRERI---------------GDAISKALEKDPSSEVLQRQLALL-------NRASITTM 103

Query: 137 HAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           H+FC E I   F L  ++   F I D+ +     E  K+  LA +  D   +  + F ++
Sbjct: 104 HSFCLEVIKNNFHL-IDLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLW 229
           +E       +  ++ II     LK   F  S  W
Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPW 187


>gi|42780319|ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
 gi|81569872|sp|Q73C23|ADDA_BACC1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|42736238|gb|AAS40174.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|324325258|gb|ADY20518.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|261823387|ref|YP_003261493.1| DNA-dependent helicase II [Pectobacterium wasabiae WPP163]
 gi|261607400|gb|ACX89886.1| DNA helicase II [Pectobacterium wasabiae WPP163]
          Length = 720

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+     +Q  A + P  +  V A AGSGKT +LV R+  LL + N  P +++ +T T 
Sbjct: 5   DLLDGLNDKQRAAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+                                    HL+ T   + GG+ 
Sbjct: 65  KAAAEMRHRI-----------------------------------NHLIGT---SQGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           + T H     +++   ++AN+   F I D +   +L++
Sbjct: 87  IGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLK 124


>gi|206976508|ref|ZP_03237414.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97]
 gi|222094863|ref|YP_002528923.1| ATP-dependent nuclease, subunit a [Bacillus cereus Q1]
 gi|251764505|sp|B9ITE9|ADDA_BACCQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|206745191|gb|EDZ56592.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97]
 gi|221238921|gb|ACM11631.1| ATP-dependent nuclease, subunit A [Bacillus cereus Q1]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|217958719|ref|YP_002337267.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187]
 gi|251764503|sp|B7HZR5|ADDA_BACC7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|217066718|gb|ACJ80968.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|50123099|ref|YP_052266.1| DNA-dependent helicase II [Pectobacterium atrosepticum SCRI1043]
 gi|49613625|emb|CAG77076.1| DNA helicase II [Pectobacterium atrosepticum SCRI1043]
          Length = 720

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+     +Q  A + P  +  V A AGSGKT +LV R+  LL + N  P +++ +T T 
Sbjct: 5   DLLDGLNDKQRAAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+                                    HL+ T   + GG+ 
Sbjct: 65  KAAAEMRHRI-----------------------------------NHLIGT---SQGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           + T H     +++   ++AN+   F I D +   +L++
Sbjct: 87  IGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLK 124


>gi|167765657|ref|ZP_02437710.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1]
 gi|167712632|gb|EDS23211.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1]
 gi|291559893|emb|CBL38693.1| recombination helicase AddA, Firmicutes type [butyrate-producing
           bacterium SSC/2]
          Length = 1188

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 25/146 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           TK +Q +         VSA AGSGKT +LV+R+++ +    HP     LL +T TKAAA 
Sbjct: 4   TKQQQKVIDQRDADILVSAAAGSGKTAVLVERIIQKITDEKHPIDVDHLLVVTFTKAAAG 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R++             L  ++ +  G +     +S      IT           TI
Sbjct: 64  EMKERIM-----------AALDEKVREFPGNQHFVKQLSLIHKAQIT-----------TI 101

Query: 137 HAFCEAIMQQFPLEANITSHFAIADE 162
           H+FC  +++ +     I  + A  DE
Sbjct: 102 HSFCMNLIRDYFYVLGIDPNTAPGDE 127


>gi|319957659|ref|YP_004168922.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319420063|gb|ADV47173.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 915

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           +SA+AGSGKT  L  R + LL      S++L  T T  AAAEM HRV+E +         
Sbjct: 9   LSASAGSGKTFALSVRYVALLFLGESSSSILAATFTNKAAAEMRHRVVEALRRLDEADFA 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E+ K  G  P++  ++K   +L   L++P    + T+ +F  ++++   LE  +  
Sbjct: 69  PFLGELAKQTGLSPDEI-LAKRPGVLRRFLDSP--THIVTLDSFFVSVLKAGALEIGLDP 125

Query: 156 HFAIADEEQ---SKKLIEEAKKSTLASIMLD 183
            F   +E      +  +EE  +  +  ++++
Sbjct: 126 GFVTKEEASVGLQEAFLEELDREGMLPVLVE 156


>gi|284032499|ref|YP_003382430.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283811792|gb|ADB33631.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1239

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 26/172 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKA 73
           +L+     EQ+  +D   + +V A AGSGKTH LV RV  L+L +  P  T+  +T T+ 
Sbjct: 3   ELLDDAAREQI-RTDTDTTLFVEAGAGSGKTHALVDRVTTLVLRDEVPLRTIAAVTFTEK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A AE+  R               L  E  K + K P+++   +A       L+      +
Sbjct: 62  AGAELRDR---------------LRVEFEKAR-KGPHRALADEA-------LDDLDSASI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            T+H+F + I+   P+EA +     + DE  S    EE + S L   +LD++
Sbjct: 99  GTLHSFAQQILLAHPIEAGLPPLIDVLDEVGSSVAFEE-RWSELQQQLLDDD 149


>gi|213961804|ref|ZP_03390070.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno]
 gi|213955593|gb|EEB66909.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno]
          Length = 1060

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 14/145 (9%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT+ LV+  L+++L + +P     LL +T T  A  EM +R++E++  +S   
Sbjct: 11  NASAGSGKTYSLVKAYLQIILGSKYPDLFRQLLAITFTNKAVFEMKNRIIELLGVFSE-- 68

Query: 94  DEILS------AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           D++L+      +E+ K   K P++    ++   L  IL       + TI  F   ++++F
Sbjct: 69  DKMLTNPHPMFSELAK-DLKLPDEELRMRSAKTLEHILHNYAAFNISTIDGFNHQLIRRF 127

Query: 148 PLEANITSHFAIADEEQSKKLIEEA 172
             + ++   F +  +  SK L+E A
Sbjct: 128 SHDLHLNPFFEV--QLDSKALLERA 150


>gi|218902338|ref|YP_002450172.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820]
 gi|251764500|sp|B7JDU4|ADDA_BACC0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|218537459|gb|ACK89857.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820]
          Length = 1240

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|330684454|gb|EGG96177.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus
           epidermidis VCU121]
          Length = 1220

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L        LL +T T  +A EM HRV          + 
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSAREMKHRV----------NQ 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I     + PN   +   R   I I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 78  RIQQASI-----EDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + ++L   F ++ E +SND            
Sbjct: 126 PNFRTSSEAENILLLEQ----TIDEVLEQHYDKLNPDFIDLTEQLSNDRSDTQF------ 175

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 176 -RNMIKQLYFF 185


>gi|321159776|pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
          Length = 647

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|262273203|ref|ZP_06051019.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP
           101886]
 gi|262222781|gb|EEY74090.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP
           101886]
          Length = 725

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 41/160 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  ID ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 4   SHLIDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLVHRIAWLMQVEYASPFSVMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ ++                  +QG                    T  
Sbjct: 62  FTNKAAAEMRGRIEQL------------------MQG--------------------TAS 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           GL   T H  C  I++   L+AN+   F I D +  ++L+
Sbjct: 84  GLWCGTFHGLCHRILRAHHLDANLPQDFQILDSDDQQRLL 123


>gi|253996791|ref|YP_003048855.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253983470|gb|ACT48328.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 1118

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 19/122 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT +L QR L+LL     P  ++ +T T  AAAEM  R+L          D 
Sbjct: 30  VEAPAGAGKTELLTQRYLKLLQTVNAPEEIIAITFTNKAAAEMRLRIL----------DS 79

Query: 96  ILSAEITKIQGKKPNKS--------DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           +L A+ +K    +P+K          + +++     ++E P  L++ TI + C  + +Q 
Sbjct: 80  LLKAD-SKEMPAQPHKQITYELSLKALQQSKQKNWQLIENPSRLRIFTIDSLCAHLARQM 138

Query: 148 PL 149
           PL
Sbjct: 139 PL 140


>gi|332179303|gb|AEE14992.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796]
          Length = 610

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 39/159 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +DL      ++ + SD +R+  + A AG+GKT +L  R  RL+  N     LL LT TK 
Sbjct: 1   MDLNLNEDQKRAVYSD-SRALLIVAGAGTGKTRVLTTRAARLIKENPDARYLL-LTFTKK 58

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM+ RV E+I                                       +T   L  
Sbjct: 59  AAREMTTRVRELIEE-------------------------------------DTKNRLYS 81

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            T H+FC  I+++      +T+ F I DE  S  L+++ 
Sbjct: 82  GTFHSFCSNIIRRRSERVGLTNDFVIIDESDSLDLMKKV 120


>gi|327404466|ref|YP_004345304.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
 gi|327319974|gb|AEA44466.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
          Length = 1049

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA----NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           V+A+AGSGKT+ LV+  LRLLL      A    ++ +T T  A+ EM  R++  +   +H
Sbjct: 12  VNASAGSGKTYNLVRNYLRLLLTEEFDRAEIGQIMAMTFTNKASIEMKSRIMSDLNKLAH 71

Query: 92  LSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             +E      E  +  G  P +S   KA+ +L  IL       V TI  F   +++ F  
Sbjct: 72  GKEESRDYLIETAQFVGASP-ESIQKKAQIVLSKILHQYEDFNVMTIDKFNLKLIRSFSK 130

Query: 150 EANITSHFAIA 160
           + ++  +F I+
Sbjct: 131 DLDLPDNFEIS 141


>gi|301052778|ref|YP_003790989.1| ATP-dependent nuclease subunit A [Bacillus anthracis CI]
 gi|300374947|gb|ADK03851.1| ATP-dependent nuclease, subunit A [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNAIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|257054559|ref|YP_003132391.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
           43017]
 gi|256584431|gb|ACU95564.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
           43017]
          Length = 817

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 39/139 (28%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           R   + A AGSGKT +L +R+  LL A   HP  ++ +T T  AAAEM  RV++++   +
Sbjct: 38  RPLLIVAGAGSGKTRVLTRRIAYLLAARGVHPGQIMAITFTNKAAAEMRDRVVDLVGGRA 97

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                 G + V T H+ C  ++++    
Sbjct: 98  --------------------------------------GAMWVSTFHSMCVRLLRREAKT 119

Query: 151 ANITSHFAIADEEQSKKLI 169
             +TS+F+I D + S++L+
Sbjct: 120 LELTSNFSIYDADDSRRLM 138


>gi|289807663|ref|ZP_06538292.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 120

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 39/143 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  LL + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 13  PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT 72

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ V T H     +++   
Sbjct: 73  --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 94

Query: 149 LEANITSHFAIADEEQSKKLIEE 171
           ++AN+   F I D E   +L++ 
Sbjct: 95  MDANLPQDFQILDSEDQMRLLKR 117


>gi|326938868|gb|AEA14764.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|118476726|ref|YP_893877.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus
           thuringiensis str. Al Hakam]
 gi|225863093|ref|YP_002748471.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102]
 gi|251764499|sp|A0RAX7|ADDA_BACAH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|118415951|gb|ABK84370.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus
           thuringiensis str. Al Hakam]
 gi|225787430|gb|ACO27647.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|30019293|ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
 gi|296501840|ref|YP_003663540.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171]
 gi|81580749|sp|Q81GP9|ADDA_BACCR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|29894836|gb|AAP08125.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
 gi|296322892|gb|ADH05820.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|30261249|ref|NP_843626.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
 gi|47526411|ref|YP_017760.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184081|ref|YP_027333.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. Sterne]
 gi|65318520|ref|ZP_00391479.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains) [Bacillus
           anthracis str. A2012]
 gi|165873114|ref|ZP_02217732.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488]
 gi|167640214|ref|ZP_02398480.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193]
 gi|170688037|ref|ZP_02879249.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465]
 gi|177655492|ref|ZP_02936935.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174]
 gi|190566724|ref|ZP_03019641.1| ATP-dependent nuclease, subunit A [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816013|ref|YP_002816022.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684]
 gi|229601554|ref|YP_002865672.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248]
 gi|254682690|ref|ZP_05146551.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str.
           CNEVA-9066]
 gi|254734108|ref|ZP_05191821.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254753588|ref|ZP_05205624.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Vollum]
 gi|254758685|ref|ZP_05210712.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str.
           Australia 94]
 gi|81583096|sp|Q81TW1|ADDA_BACAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|30254863|gb|AAP25112.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
 gi|47501559|gb|AAT30235.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178008|gb|AAT53384.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Sterne]
 gi|164711168|gb|EDR16727.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488]
 gi|167511815|gb|EDR87195.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193]
 gi|170667932|gb|EDT18683.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465]
 gi|172080091|gb|EDT65187.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174]
 gi|190562276|gb|EDV16244.1| ATP-dependent nuclease, subunit A [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003890|gb|ACP13633.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684]
 gi|229265962|gb|ACQ47599.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|325663487|ref|ZP_08151897.1| hypothetical protein HMPREF0490_02638 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470386|gb|EGC73617.1| hypothetical protein HMPREF0490_02638 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 195

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 25/164 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +S TK +  +     R+  VSA AGSGKT +LV+R++  L  +  P     +L +T T+A
Sbjct: 3   VSWTKEQAQVIHLRNRNILVSAAAGSGKTAVLVERIITRLTVDEPPIDVDQMLVVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ +                I K   ++P    + +   L+          +V
Sbjct: 63  AAAEMKERIRD---------------AIEKKLEEQPENVHLQRQATLI-------HNAQV 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            TIH+FC ++++ +    ++   F IADE + K L ++  +  L
Sbjct: 101 TTIHSFCLSVIRDYFHMIDLDPGFRIADEGELKLLRQDVLEEVL 144


>gi|254725483|ref|ZP_05187265.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A1055]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|228913817|ref|ZP_04077442.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845756|gb|EEM90782.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 1240

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 26  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 81

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 82  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 123

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 124 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 180

Query: 205 ETLI 208
           + +I
Sbjct: 181 QRMI 184


>gi|170707635|ref|ZP_02898087.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389]
 gi|170127410|gb|EDS96285.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|196037643|ref|ZP_03104954.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99]
 gi|196031885|gb|EDX70481.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|218233217|ref|YP_002365926.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264]
 gi|251764502|sp|B7HGP9|ADDA_BACC4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|218161174|gb|ACK61166.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|206967662|ref|ZP_03228618.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134]
 gi|206736582|gb|EDZ53729.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|167635407|ref|ZP_02393721.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442]
 gi|254740248|ref|ZP_05197940.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Kruger
           B]
 gi|167529235|gb|EDR91988.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442]
          Length = 1241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|294794377|ref|ZP_06759513.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44]
 gi|294454707|gb|EFG23080.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44]
          Length = 1251

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 29/183 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91
           V+A AGSGKT +LV+R++  L    +P     L+ +T TKAAA EMS R+ L +  A   
Sbjct: 28  VAAAAGSGKTAVLVERIITRLKDMDNPLSVQELMVVTFTKAAAQEMSARIGLALAKAMES 87

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D  L A + +     P+                      + T+H+FC+ +++ +  + 
Sbjct: 88  TDDAALQARLERQLNLLPSA--------------------HISTLHSFCQWVIRSYFYKL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISD 210
           +I     I +E +   L +E     LA ++  + EE     YE+ +  S+D+    L + 
Sbjct: 128 DINPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAK 183

Query: 211 IIS 213
           I+S
Sbjct: 184 IMS 186


>gi|197302903|ref|ZP_03167954.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC
           29176]
 gi|197297984|gb|EDY32533.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC
           29176]
          Length = 1256

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 25/195 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK ++ +     R+  VSA AGSGKT +LV+R++  +    +P     LL +T+T+A
Sbjct: 3   VKWTKEQRQVIDLRDRNILVSAAAGSGKTAVLVERIISRITDEKNPVDVDKLLVVTYTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+               +A I K   + P   ++ +   L+ + +       +
Sbjct: 63  AAAEMKERI---------------AAAIEKKLEEFPGNLNLEQQASLIHSAM-------I 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H FC ++++       I   F + +E + + L ++     L      + EE ++   
Sbjct: 101 TTVHKFCLSVIRDHFHVIGIDPSFRVGEEGELRLLKQDVLDEMLEEHYAKDEEEFREFVE 160

Query: 194 EILEISNDEDIETLI 208
           +      D+ IE LI
Sbjct: 161 KYGTGRTDKKIEELI 175


>gi|183221122|ref|YP_001839118.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911213|ref|YP_001962768.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775889|gb|ABZ94190.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779544|gb|ABZ97842.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 664

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 38/150 (25%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           P     V A AG+GKT  LV R+  L+    +P ++L LT T+ AA EM  R  +I+   
Sbjct: 16  PKGPILVVAGAGTGKTKTLVHRLAHLVKNGTNPESILLLTFTRRAAKEMLGRASQILD-- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                        H ++++    GG    T H+FC   ++++  
Sbjct: 74  -----------------------------HRMMSVR---GG----TFHSFCHLFLRKYAN 97

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLAS 179
             ++ SHF I DEE +   +  A+   + +
Sbjct: 98  ALSLDSHFTILDEEDTIGFVGMARDQVVTT 127


>gi|291277552|ref|YP_003517324.1| putative DNA helicase [Helicobacter mustelae 12198]
 gi|290964746|emb|CBG40601.1| putative DNA helicase [Helicobacter mustelae 12198]
          Length = 898

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 5/129 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD-EI 96
           A+AGSGKT  L  R L LL A A+   +L LT TK AA EM  R+ + +   + + + + 
Sbjct: 10  ASAGSGKTFALTLRYLSLLFAGANAGEILALTFTKKAAGEMRERISDALEELASVGESKY 69

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           L   IT     K  +  +  A+ +    L +   +K+ T+ +F  +++++F     ++ +
Sbjct: 70  LQNLITDYGFSK--EEILGNAKRVFGHFLAS--NIKITTLDSFFNSVVRKFCWNVGLSKN 125

Query: 157 FAIADEEQS 165
           F I  +E+S
Sbjct: 126 FTIKAQEES 134


>gi|218701273|ref|YP_002408902.1| DNA-dependent helicase II [Escherichia coli IAI39]
 gi|218371259|emb|CAR19093.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI39]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|331685533|ref|ZP_08386117.1| DNA helicase II [Escherichia coli H299]
 gi|331077234|gb|EGI48448.1| DNA helicase II [Escherichia coli H299]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|157158058|ref|YP_001465297.1| DNA-dependent helicase II [Escherichia coli E24377A]
 gi|157080088|gb|ABV19796.1| DNA helicase II [Escherichia coli E24377A]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|293417279|ref|ZP_06659904.1| DNA helicase II [Escherichia coli B185]
 gi|291431047|gb|EFF04042.1| DNA helicase II [Escherichia coli B185]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|271502378|ref|YP_003335404.1| DNA helicase II [Dickeya dadantii Ech586]
 gi|270345933|gb|ACZ78698.1| DNA helicase II [Dickeya dadantii Ech586]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLLDSLNDKQRDAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+           D++L                             + G
Sbjct: 62  FTNKAAAEMRHRI-----------DQLLGT---------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+A +   F I D E   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKA 129


>gi|218707447|ref|YP_002414966.1| DNA-dependent helicase II [Escherichia coli UMN026]
 gi|331665463|ref|ZP_08366362.1| DNA helicase II [Escherichia coli TA143]
 gi|218434544|emb|CAR15471.1| DNA-dependent ATPase I and helicase II [Escherichia coli UMN026]
 gi|331057361|gb|EGI29350.1| DNA helicase II [Escherichia coli TA143]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|196036255|ref|ZP_03103654.1| ATP-dependent nuclease, subunit A [Bacillus cereus W]
 gi|195991230|gb|EDX55199.1| ATP-dependent nuclease, subunit A [Bacillus cereus W]
          Length = 1241

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNMIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|191166051|ref|ZP_03027886.1| DNA helicase II [Escherichia coli B7A]
 gi|190903827|gb|EDV63541.1| DNA helicase II [Escherichia coli B7A]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|209921291|ref|YP_002295375.1| DNA-dependent helicase II [Escherichia coli SE11]
 gi|209914550|dbj|BAG79624.1| DNA helicase II [Escherichia coli SE11]
 gi|324016210|gb|EGB85429.1| DNA helicase II [Escherichia coli MS 117-3]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|168763938|ref|ZP_02788945.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501]
 gi|217325077|ref|ZP_03441161.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588]
 gi|189365967|gb|EDU84383.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501]
 gi|217321298|gb|EEC29722.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|126030797|pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
 gi|126030798|pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
 gi|126030803|pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
 gi|126030804|pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
 gi|126030807|pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 gi|126030808|pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 gi|126030811|pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
 gi|126030812|pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
          Length = 680

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|323483647|ref|ZP_08089031.1| hypothetical protein HMPREF9474_00780 [Clostridium symbiosum
           WAL-14163]
 gi|323403074|gb|EGA95388.1| hypothetical protein HMPREF9474_00780 [Clostridium symbiosum
           WAL-14163]
          Length = 109

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 10/112 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAA 74
           ++ TK ++ +     R+  VSA AGSGKT +LV+R++R++  ++      LL +T TKAA
Sbjct: 3   VNWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITGDSPIDIDRLLVMTFTKAA 62

Query: 75  AAEMSHRVLEIITA-WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           AAEM  R+   I   W  +           I   +P++  + + R L +++ 
Sbjct: 63  AAEMRERIQAAIEKNWKKIPG-------MSICSSRPSRYSLPRLRRLTVSVF 107


>gi|309796243|ref|ZP_07690653.1| DNA helicase II [Escherichia coli MS 145-7]
 gi|308120125|gb|EFO57387.1| DNA helicase II [Escherichia coli MS 145-7]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|43297|emb|CAA25321.1| pot. DNA helicase II [Escherichia coli]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|298383180|ref|ZP_06992774.1| DNA helicase II [Escherichia coli FVEC1302]
 gi|298276416|gb|EFI17935.1| DNA helicase II [Escherichia coli FVEC1302]
          Length = 722

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 6   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 64  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 86  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126


>gi|253584027|ref|ZP_04861225.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725]
 gi|251834599|gb|EES63162.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725]
          Length = 1036

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 17/187 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AG+GKT+ L    +  L        +L +T TK A AE+  R+L+ +     L++ 
Sbjct: 20  LKASAGTGKTYRLSLEYVGALCRGTDFKDILVMTFTKKATAEIKERILKFL---KELAEN 76

Query: 96  ILSAEITKIQGKK--PN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEA 151
               E  K   KK  P+ + +  K   +   +++    LKV TI AF   I ++      
Sbjct: 77  AKDGESIKENLKKIYPDMEFNQQKISAVYQDLIQNRDKLKVYTIDAFTNLIFKKAIAPYL 136

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLI 208
            I S+  I D+E  K LI+  +K      + DN E+  +AF   LE ++++D+E   TLI
Sbjct: 137 KIYSYEIIDDDENRKILIKTFQK------IFDNKEDF-RAFKGFLEDNSEKDMENYLTLI 189

Query: 209 SDIISNR 215
            +I++ R
Sbjct: 190 KNILNER 196


>gi|222150842|ref|YP_002559995.1| hypothetical protein MCCL_0592 [Macrococcus caseolyticus JCSC5402]
 gi|222119964|dbj|BAH17299.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 1148

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 29/165 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           T S+Q       +   V+A AGSGKT +LV+R++R ++  + +   LL +T T A+A EM
Sbjct: 4   TASQQEAIVTTGQDTLVAAAAGSGKTAVLVERIIRKIIDQSVNVDELLVVTFTNASAKEM 63

Query: 79  SHRVLEIITAWSHLSDEILSA---EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            HR+      ++ L + +  A   E  K Q  K +++D+S                   T
Sbjct: 64  KHRI------FNRLQEALNDAPHNEHLKTQLIKLHQADIS-------------------T 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           +H FC  ++++F    ++   F  A EE+   L+ +A    L +I
Sbjct: 99  LHRFCLNLIERFYYTIDLDPTFRTASEEERALLLMQAIDDVLETI 143


>gi|331655498|ref|ZP_08356491.1| DNA helicase II [Escherichia coli M718]
 gi|331046819|gb|EGI18903.1| DNA helicase II [Escherichia coli M718]
          Length = 722

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 6   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 64  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 86  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126


>gi|331644546|ref|ZP_08345666.1| DNA helicase II [Escherichia coli H736]
 gi|331679923|ref|ZP_08380586.1| DNA helicase II [Escherichia coli H591]
 gi|331036218|gb|EGI08453.1| DNA helicase II [Escherichia coli H736]
 gi|331072470|gb|EGI43802.1| DNA helicase II [Escherichia coli H591]
 gi|332105031|gb|EGJ08377.1| DNA helicase II [Shigella sp. D9]
          Length = 722

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 6   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 64  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 86  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126


>gi|317497577|ref|ZP_07955895.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895136|gb|EFV17300.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 727

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 25/146 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           TK +Q +         VSA AGSGKT +LV+R+++ +    HP     LL +T TKAAA 
Sbjct: 4   TKQQQKVIDQRDADILVSAAAGSGKTAVLVERIIQKITDEKHPIDVDHLLVVTFTKAAAG 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R++             L  ++ +  G +     +S      IT           TI
Sbjct: 64  EMKERIM-----------AALDEKVREFPGNQHFVKQLSLIHKAQIT-----------TI 101

Query: 137 HAFCEAIMQQFPLEANITSHFAIADE 162
           H+FC  +++ +     I  + A  DE
Sbjct: 102 HSFCMNLIRDYFYVLGIDPNTAPGDE 127


>gi|242237694|ref|YP_002985875.1| DNA-dependent helicase II [Dickeya dadantii Ech703]
 gi|242129751|gb|ACS84053.1| DNA helicase II [Dickeya dadantii Ech703]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLLDSLNDKQRDAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                        + G
Sbjct: 62  FTNKAAAEMRHRIDQLIGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+A +   F I D E   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKA 129


>gi|187733738|ref|YP_001882507.1| DNA-dependent helicase II [Shigella boydii CDC 3083-94]
 gi|187430730|gb|ACD10004.1| DNA helicase II [Shigella boydii CDC 3083-94]
 gi|320176055|gb|EFW51124.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella dysenteriae CDC
           74-1112]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|323964058|gb|EGB59548.1| DNA helicase II [Escherichia coli M863]
 gi|327250663|gb|EGE62369.1| DNA helicase II [Escherichia coli STEC_7v]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|300921476|ref|ZP_07137824.1| DNA helicase II [Escherichia coli MS 115-1]
 gi|300411593|gb|EFJ94903.1| DNA helicase II [Escherichia coli MS 115-1]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|300904068|ref|ZP_07121948.1| DNA helicase II [Escherichia coli MS 84-1]
 gi|301303709|ref|ZP_07209830.1| DNA helicase II [Escherichia coli MS 124-1]
 gi|300403948|gb|EFJ87486.1| DNA helicase II [Escherichia coli MS 84-1]
 gi|300841009|gb|EFK68769.1| DNA helicase II [Escherichia coli MS 124-1]
 gi|315254178|gb|EFU34146.1| DNA helicase II [Escherichia coli MS 85-1]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|30064891|ref|NP_839062.1| DNA-dependent helicase II [Shigella flexneri 2a str. 2457T]
 gi|56480441|ref|NP_709620.2| DNA-dependent helicase II [Shigella flexneri 2a str. 301]
 gi|110807496|ref|YP_691016.1| DNA-dependent helicase II [Shigella flexneri 5 str. 8401]
 gi|30043151|gb|AAP18873.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str.
           2457T]
 gi|56383992|gb|AAN45327.2| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str.
           301]
 gi|110617044|gb|ABF05711.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 5 str.
           8401]
 gi|281603206|gb|ADA76190.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2002017]
 gi|313647145|gb|EFS11600.1| DNA helicase II [Shigella flexneri 2a str. 2457T]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|222035511|emb|CAP78256.1| DNA helicase II [Escherichia coli LF82]
 gi|312948366|gb|ADR29193.1| DNA-dependent helicase II [Escherichia coli O83:H1 str. NRG 857C]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|163939035|ref|YP_001643919.1| recombination helicase AddA [Bacillus weihenstephanensis KBAB4]
 gi|251764507|sp|A9VJ02|ADDA_BACWK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|163861232|gb|ABY42291.1| Recombination helicase AddA [Bacillus weihenstephanensis KBAB4]
          Length = 1241

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIIREENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+    P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDGPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNSIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|216673|dbj|BAA00048.1| uvrD [Escherichia coli]
 gi|355936|prf||1207236A helicase II
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T T 
Sbjct: 7   LDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+ +++                                        + GG+ 
Sbjct: 65  KAAAEMRHRIGQLMGT--------------------------------------SQGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H     +++   ++AN+   F I D E   +L++
Sbjct: 87  VGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|293407440|ref|ZP_06651360.1| DNA helicase II [Escherichia coli FVEC1412]
 gi|291425551|gb|EFE98589.1| DNA helicase II [Escherichia coli FVEC1412]
          Length = 722

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 6   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 64  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 86  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126


>gi|16131665|ref|NP_418258.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. MG1655]
 gi|89110206|ref|AP_003986.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. W3110]
 gi|170083295|ref|YP_001732615.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. DH10B]
 gi|193065672|ref|ZP_03046737.1| DNA helicase II [Escherichia coli E22]
 gi|194429230|ref|ZP_03061758.1| DNA helicase II [Escherichia coli B171]
 gi|194434041|ref|ZP_03066311.1| DNA helicase II [Shigella dysenteriae 1012]
 gi|218697531|ref|YP_002405198.1| DNA-dependent helicase II [Escherichia coli 55989]
 gi|238902889|ref|YP_002928685.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952]
 gi|256021443|ref|ZP_05435308.1| DNA-dependent helicase II [Shigella sp. D9]
 gi|256026160|ref|ZP_05440025.1| DNA-dependent helicase II [Escherichia sp. 4_1_40B]
 gi|260846411|ref|YP_003224189.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O103:H2 str. 12009]
 gi|293468131|ref|ZP_06664543.1| DNA helicase II [Escherichia coli B088]
 gi|300818716|ref|ZP_07098923.1| DNA helicase II [Escherichia coli MS 107-1]
 gi|300823349|ref|ZP_07103480.1| DNA helicase II [Escherichia coli MS 119-7]
 gi|300923317|ref|ZP_07139365.1| DNA helicase II [Escherichia coli MS 182-1]
 gi|300955181|ref|ZP_07167578.1| DNA helicase II [Escherichia coli MS 175-1]
 gi|301646119|ref|ZP_07246019.1| DNA helicase II [Escherichia coli MS 146-1]
 gi|307140512|ref|ZP_07499868.1| DNA-dependent helicase II [Escherichia coli H736]
 gi|307313613|ref|ZP_07593233.1| DNA helicase II [Escherichia coli W]
 gi|312971900|ref|ZP_07786074.1| DNA helicase II [Escherichia coli 1827-70]
 gi|331670659|ref|ZP_08371496.1| DNA helicase II [Escherichia coli TA271]
 gi|137194|sp|P03018|UVRD_ECOLI RecName: Full=DNA helicase II
 gi|43299|emb|CAA27671.1| unnamed protein product [Escherichia coli]
 gi|2367296|gb|AAC76816.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. MG1655]
 gi|85676237|dbj|BAE77487.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K12
           substr. W3110]
 gi|169891130|gb|ACB04837.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. DH10B]
 gi|192926639|gb|EDV81268.1| DNA helicase II [Escherichia coli E22]
 gi|194412742|gb|EDX29036.1| DNA helicase II [Escherichia coli B171]
 gi|194417699|gb|EDX33798.1| DNA helicase II [Shigella dysenteriae 1012]
 gi|218354263|emb|CAV00941.1| DNA-dependent ATPase I and helicase II [Escherichia coli 55989]
 gi|238860998|gb|ACR62996.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952]
 gi|257761558|dbj|BAI33055.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O103:H2 str. 12009]
 gi|260451344|gb|ACX41766.1| DNA helicase II [Escherichia coli DH1]
 gi|291321509|gb|EFE60947.1| DNA helicase II [Escherichia coli B088]
 gi|300317898|gb|EFJ67682.1| DNA helicase II [Escherichia coli MS 175-1]
 gi|300420403|gb|EFK03714.1| DNA helicase II [Escherichia coli MS 182-1]
 gi|300524135|gb|EFK45204.1| DNA helicase II [Escherichia coli MS 119-7]
 gi|300528682|gb|EFK49744.1| DNA helicase II [Escherichia coli MS 107-1]
 gi|301075645|gb|EFK90451.1| DNA helicase II [Escherichia coli MS 146-1]
 gi|306906594|gb|EFN37106.1| DNA helicase II [Escherichia coli W]
 gi|309704248|emb|CBJ03596.1| DNA helicase II [Escherichia coli ETEC H10407]
 gi|310334277|gb|EFQ00482.1| DNA helicase II [Escherichia coli 1827-70]
 gi|315063105|gb|ADT77432.1| DNA-dependent ATPase I and helicase II [Escherichia coli W]
 gi|315138390|dbj|BAJ45549.1| DNA-dependent helicase II [Escherichia coli DH1]
 gi|315618489|gb|EFU99075.1| DNA helicase II [Escherichia coli 3431]
 gi|320198480|gb|EFW73081.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli EC4100B]
 gi|323161123|gb|EFZ47041.1| DNA helicase II [Escherichia coli E128010]
 gi|323182585|gb|EFZ67989.1| DNA helicase II [Escherichia coli 1357]
 gi|323380831|gb|ADX53099.1| DNA helicase II [Escherichia coli KO11]
 gi|323934201|gb|EGB30632.1| DNA helicase II [Escherichia coli E1520]
 gi|323938949|gb|EGB35168.1| DNA helicase II [Escherichia coli E482]
 gi|324115724|gb|EGC09659.1| DNA helicase II [Escherichia coli E1167]
 gi|331062132|gb|EGI34054.1| DNA helicase II [Escherichia coli TA271]
 gi|332084961|gb|EGI90143.1| DNA helicase II [Shigella dysenteriae 155-74]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|15804402|ref|NP_290442.1| DNA-dependent helicase II [Escherichia coli O157:H7 EDL933]
 gi|15833997|ref|NP_312770.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. Sakai]
 gi|74314325|ref|YP_312744.1| DNA-dependent helicase II [Shigella sonnei Ss046]
 gi|110644138|ref|YP_671868.1| DNA-dependent helicase II [Escherichia coli 536]
 gi|117626072|ref|YP_859395.1| DNA-dependent helicase II [Escherichia coli APEC O1]
 gi|161486051|ref|NP_756593.2| DNA-dependent helicase II [Escherichia coli CFT073]
 gi|162138327|ref|YP_543324.2| DNA-dependent helicase II [Escherichia coli UTI89]
 gi|168750375|ref|ZP_02775397.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113]
 gi|168753710|ref|ZP_02778717.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401]
 gi|168768094|ref|ZP_02793101.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486]
 gi|168775636|ref|ZP_02800643.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196]
 gi|168780712|ref|ZP_02805719.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076]
 gi|168786651|ref|ZP_02811658.1| DNA helicase II [Escherichia coli O157:H7 str. EC869]
 gi|168801123|ref|ZP_02826130.1| DNA helicase II [Escherichia coli O157:H7 str. EC508]
 gi|170679582|ref|YP_001746130.1| DNA-dependent helicase II [Escherichia coli SMS-3-5]
 gi|191174264|ref|ZP_03035773.1| DNA helicase II [Escherichia coli F11]
 gi|194438675|ref|ZP_03070763.1| DNA helicase II [Escherichia coli 101-1]
 gi|195938102|ref|ZP_03083484.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. EC4024]
 gi|208807358|ref|ZP_03249695.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206]
 gi|208813979|ref|ZP_03255308.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045]
 gi|208819804|ref|ZP_03260124.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042]
 gi|209396002|ref|YP_002273330.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115]
 gi|215489141|ref|YP_002331572.1| DNA-dependent helicase II [Escherichia coli O127:H6 str. E2348/69]
 gi|218550963|ref|YP_002384754.1| DNA-dependent helicase II [Escherichia fergusonii ATCC 35469]
 gi|227888602|ref|ZP_04006407.1| excision endonuclease subunit UvrD [Escherichia coli 83972]
 gi|253775563|ref|YP_003038394.1| DNA-dependent helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163755|ref|YP_003046863.1| DNA-dependent helicase II [Escherichia coli B str. REL606]
 gi|254795809|ref|YP_003080646.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. TW14359]
 gi|261225587|ref|ZP_05939868.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255633|ref|ZP_05948166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285227|ref|YP_003502045.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615]
 gi|293413255|ref|ZP_06655917.1| DNA helicase II [Escherichia coli B354]
 gi|301025742|ref|ZP_07189257.1| DNA helicase II [Escherichia coli MS 69-1]
 gi|301047305|ref|ZP_07194391.1| DNA helicase II [Escherichia coli MS 185-1]
 gi|306815148|ref|ZP_07449301.1| DNA-dependent helicase II [Escherichia coli NC101]
 gi|312969459|ref|ZP_07783661.1| DNA helicase II [Escherichia coli 2362-75]
 gi|331660158|ref|ZP_08361094.1| DNA helicase II [Escherichia coli TA206]
 gi|12518681|gb|AAG59006.1|AE005612_9 DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. EDL933]
 gi|13364219|dbj|BAB38166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. Sakai]
 gi|73857802|gb|AAZ90509.1| DNA-dependent ATPase I and helicase II [Shigella sonnei Ss046]
 gi|110345730|gb|ABG71967.1| DNA helicase II [Escherichia coli 536]
 gi|115515196|gb|ABJ03271.1| DNA-dependent ATPase I and helicase II [Escherichia coli APEC O1]
 gi|170517300|gb|ACB15478.1| DNA helicase II [Escherichia coli SMS-3-5]
 gi|187768818|gb|EDU32662.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196]
 gi|188015427|gb|EDU53549.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113]
 gi|189001426|gb|EDU70412.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076]
 gi|189359023|gb|EDU77442.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401]
 gi|189362636|gb|EDU81055.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486]
 gi|189373276|gb|EDU91692.1| DNA helicase II [Escherichia coli O157:H7 str. EC869]
 gi|189376660|gb|EDU95076.1| DNA helicase II [Escherichia coli O157:H7 str. EC508]
 gi|190905447|gb|EDV65077.1| DNA helicase II [Escherichia coli F11]
 gi|194422479|gb|EDX38478.1| DNA helicase II [Escherichia coli 101-1]
 gi|208727159|gb|EDZ76760.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206]
 gi|208735256|gb|EDZ83943.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045]
 gi|208739927|gb|EDZ87609.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042]
 gi|209157402|gb|ACI34835.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115]
 gi|209753228|gb|ACI74921.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753230|gb|ACI74922.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753232|gb|ACI74923.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753234|gb|ACI74924.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753236|gb|ACI74925.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|215267213|emb|CAS11661.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218358504|emb|CAQ91151.1| DNA-dependent ATPase I and helicase II [Escherichia fergusonii ATCC
           35469]
 gi|227834441|gb|EEJ44907.1| excision endonuclease subunit UvrD [Escherichia coli 83972]
 gi|242379343|emb|CAQ34155.1| DNA-dependent ATPase I and helicase II, subunit of UvrABC
           Nucleotide Excision Repair Complex [Escherichia coli
           BL21(DE3)]
 gi|253326607|gb|ACT31209.1| DNA helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975656|gb|ACT41327.1| DNA-dependent ATPase I and helicase II [Escherichia coli B str.
           REL606]
 gi|253979812|gb|ACT45482.1| DNA-dependent ATPase I and helicase II [Escherichia coli BL21(DE3)]
 gi|254595209|gb|ACT74570.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. TW14359]
 gi|281180862|dbj|BAI57192.1| DNA helicase II [Escherichia coli SE15]
 gi|284923921|emb|CBG37020.1| DNA helicase II [Escherichia coli 042]
 gi|290765100|gb|ADD59061.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615]
 gi|291468203|gb|EFF10700.1| DNA helicase II [Escherichia coli B354]
 gi|294492576|gb|ADE91332.1| DNA helicase II [Escherichia coli IHE3034]
 gi|300300824|gb|EFJ57209.1| DNA helicase II [Escherichia coli MS 185-1]
 gi|300395865|gb|EFJ79403.1| DNA helicase II [Escherichia coli MS 69-1]
 gi|305851517|gb|EFM51971.1| DNA-dependent helicase II [Escherichia coli NC101]
 gi|307555939|gb|ADN48714.1| DNA helicase II [Escherichia coli ABU 83972]
 gi|307628876|gb|ADN73180.1| DNA-dependent helicase II [Escherichia coli UM146]
 gi|312286006|gb|EFR13924.1| DNA helicase II [Escherichia coli 2362-75]
 gi|315296794|gb|EFU56086.1| DNA helicase II [Escherichia coli MS 16-3]
 gi|320197622|gb|EFW72234.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli WV_060327]
 gi|320639296|gb|EFX08918.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. G5101]
 gi|320644681|gb|EFX13731.1| DNA-dependent helicase II [Escherichia coli O157:H- str. 493-89]
 gi|320650006|gb|EFX18509.1| DNA-dependent helicase II [Escherichia coli O157:H- str. H 2687]
 gi|320655352|gb|EFX23294.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320660978|gb|EFX28421.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666102|gb|EFX33116.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. LSU-61]
 gi|323167561|gb|EFZ53267.1| DNA helicase II [Shigella sonnei 53G]
 gi|323189761|gb|EFZ75040.1| DNA helicase II [Escherichia coli RN587/1]
 gi|323949303|gb|EGB45193.1| DNA helicase II [Escherichia coli H252]
 gi|323954020|gb|EGB49818.1| DNA helicase II [Escherichia coli H263]
 gi|323959068|gb|EGB54737.1| DNA helicase II [Escherichia coli H489]
 gi|323969346|gb|EGB64645.1| DNA helicase II [Escherichia coli TA007]
 gi|323974395|gb|EGB69523.1| DNA helicase II [Escherichia coli TW10509]
 gi|324111038|gb|EGC05025.1| DNA helicase II [Escherichia fergusonii B253]
 gi|326344269|gb|EGD68029.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str.
           1125]
 gi|326347903|gb|EGD71617.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str.
           1044]
 gi|330908113|gb|EGH36632.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli AA86]
 gi|331052726|gb|EGI24761.1| DNA helicase II [Escherichia coli TA206]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|157163290|ref|YP_001460608.1| DNA-dependent helicase II [Escherichia coli HS]
 gi|170022164|ref|YP_001727118.1| DNA-dependent helicase II [Escherichia coli ATCC 8739]
 gi|188494883|ref|ZP_03002153.1| DNA helicase II [Escherichia coli 53638]
 gi|193067953|ref|ZP_03048918.1| DNA helicase II [Escherichia coli E110019]
 gi|218556376|ref|YP_002389290.1| DNA-dependent helicase II [Escherichia coli IAI1]
 gi|260857781|ref|YP_003231672.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O26:H11 str. 11368]
 gi|260870538|ref|YP_003236940.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O111:H- str. 11128]
 gi|157068970|gb|ABV08225.1| DNA helicase II [Escherichia coli HS]
 gi|169757092|gb|ACA79791.1| DNA helicase II [Escherichia coli ATCC 8739]
 gi|188490082|gb|EDU65185.1| DNA helicase II [Escherichia coli 53638]
 gi|192958573|gb|EDV89011.1| DNA helicase II [Escherichia coli E110019]
 gi|218363145|emb|CAR00786.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI1]
 gi|257756430|dbj|BAI27932.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O26:H11 str. 11368]
 gi|257766894|dbj|BAI38389.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O111:H- str. 11128]
 gi|323155219|gb|EFZ41403.1| DNA helicase II [Escherichia coli EPECa14]
 gi|323173428|gb|EFZ59057.1| DNA helicase II [Escherichia coli LT-68]
 gi|323177826|gb|EFZ63410.1| DNA helicase II [Escherichia coli 1180]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|331649638|ref|ZP_08350720.1| DNA helicase II [Escherichia coli M605]
 gi|331675280|ref|ZP_08376031.1| DNA helicase II [Escherichia coli TA280]
 gi|331041508|gb|EGI13656.1| DNA helicase II [Escherichia coli M605]
 gi|331067566|gb|EGI38970.1| DNA helicase II [Escherichia coli TA280]
          Length = 722

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 6   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 64  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 86  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126


>gi|238018401|ref|ZP_04598827.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748]
 gi|237864872|gb|EEP66162.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748]
          Length = 1266

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91
           V+A AGSGKT +LV+R++  L    +P     L+ +T TKAAA EMS R+ L +  A   
Sbjct: 28  VAAAAGSGKTAVLVERIITRLKDMDNPLSVQELMVVTFTKAAAQEMSARIGLALAKAMES 87

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             DE +   + +     P+                      + T+H+FC+ +++ +  + 
Sbjct: 88  TDDEAMQQRLERQLNLLPSA--------------------HISTLHSFCQWVIRSYFYKL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISD 210
           +I     I +E +   L +E     LA ++  + EE     YE+ +  S+D+    L + 
Sbjct: 128 DINPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAK 183

Query: 211 IIS 213
           I+S
Sbjct: 184 IMS 186


>gi|196044179|ref|ZP_03111415.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108]
 gi|196024818|gb|EDX63489.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108]
          Length = 1241

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA EM +R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDHLLVVTFTNAAAQEMKNRIGE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       + K+   +P    + K   LL           + TIH+FC  +++ + 
Sbjct: 83  -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204
              ++   F IA++ +++ L EE     L     +   E    F+E+++      +D+D+
Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181

Query: 205 ETLI 208
           + +I
Sbjct: 182 QRMI 185


>gi|209523272|ref|ZP_03271828.1| UvrD/REP helicase [Arthrospira maxima CS-328]
 gi|209496423|gb|EDZ96722.1| UvrD/REP helicase [Arthrospira maxima CS-328]
          Length = 1070

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 30/165 (18%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           +S T  +Q  A+ P +S  V+A AG+GKT++LV+R L  L+     P  ++ +T T+ AA
Sbjct: 1   MSLTNEQQAAATSP-QSIIVTAGAGTGKTYMLVERYLYYLVEKGLSPLEIVAVTFTEKAA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+                   ++++ + PN+ D          IL       + T
Sbjct: 60  QELRSRIR------------------SQVRQQLPNRPD----------ILAELEAAPIST 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           IHA    I ++ P  AN+ + F + ++ + K  + E  ++ L+ +
Sbjct: 92  IHALASRICREHPQAANVAADFQVLEDLEGKIWLYEGLETALSKL 136


>gi|320191094|gb|EFW65744.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str.
           EC1212]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|299822108|ref|ZP_07053994.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601]
 gi|299815637|gb|EFI82875.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601]
          Length = 1240

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 28/182 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L    A      LL +T T A+AAEM  RV          
Sbjct: 31  VAAAAGSGKTAVLVSRIIEKLKDETAGLQVDELLVVTFTNASAAEMKQRV---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                 A + K   + P+   + K   LL           + T+H+FC  ++++F   A+
Sbjct: 81  -----EAALEKALQEDPDSRHLKKQIALL-------NYASISTLHSFCLDVIRKFYYVAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           I  +F + +  +S  + +E  ++ L     D  EE ++ F+ +   +ND   + L+ DI+
Sbjct: 129 IDPNFRLIEPLESGMIQDEVMEALLERHYGD--EENERFFHLVDSFTNDRSDDVLL-DIL 185

Query: 213 SN 214
           + 
Sbjct: 186 TR 187


>gi|227325792|ref|ZP_03829816.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 720

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------DHLIGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   ++AN+   F I D +   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLK 124


>gi|313887981|ref|ZP_07821659.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845936|gb|EFR33319.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 975

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 35/144 (24%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AG+GKT +L  R + ++  N  P  +L +T TK AA EM  R+               
Sbjct: 22  AGAGTGKTRVLTSRFINIVKNNISPKHILAITFTKKAAQEMLGRI--------------- 66

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                              ++ L++  +E     L V TIH+F   I+  +     I   
Sbjct: 67  -------------------SKELVLNNIEFEERDLNVMTIHSFAHEIVGNYSFILGINPR 107

Query: 157 FAIADEEQSKKLIEEAKKSTLASI 180
           F I +E +   L+EEA K +  + 
Sbjct: 108 FKILEEGEGDYLLEEAVKESFNNF 131


>gi|306821093|ref|ZP_07454709.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550786|gb|EFM38761.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 1149

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 44/207 (21%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            ++  VSA AGSGKT +L QR++ L+   +   +++L LT T AAA EMS R+ + +  +
Sbjct: 18  NKNILVSAAAGSGKTAVLTQRIIDLITKEDVDITSMLVLTFTNAAANEMSARIQKKMYEY 77

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                         ++  + NK       H+   I     G  + T+H+FC  I+++   
Sbjct: 78  --------------LEENRNNK-------HIKKQI-SMISGASISTMHSFCIDIIRENFN 115

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
            ++I  +F IA+                A++ +   E + + F E  E + DED   L++
Sbjct: 116 FSDIDPNFVIAN---------------AATVAMIKQESISEIFEERYE-NQDEDF-LLLT 158

Query: 210 DIISNRTA----LKLIFFFFSYLWRRK 232
           DI S+R      + +I+  ++++  +K
Sbjct: 159 DIYSSRYDDSKLINIIYKIYNFIQSKK 185


>gi|153953342|ref|YP_001394107.1| ATP-dependent exonuclease [Clostridium kluyveri DSM 555]
 gi|251764518|sp|A5N628|ADDA_CLOK5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|146346223|gb|EDK32759.1| Predicted ATP-dependent exonuclease [Clostridium kluyveri DSM 555]
          Length = 1235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 25/146 (17%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEII 86
           P  +  V+A AG+GKT +LV+R+L+ ++ ++       LL +T T AAA+EM  RV E +
Sbjct: 16  PNCNLLVAAGAGTGKTAVLVERILQKVINDSEEVDIDKLLVVTFTNAAASEMKERVGEAL 75

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           +       ++L    T            SK     + +L       + TIH+FC  +++ 
Sbjct: 76  S-------KLLELNCT------------SKNLQRQLALLNQSN---IMTIHSFCLKVIKN 113

Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172
                ++  +F I D+ +SK L ++A
Sbjct: 114 NFHRIDLDPNFRICDDTESKLLKQDA 139


>gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
 gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
          Length = 862

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 40/156 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +S  + ++LL ++  ++  + A+AG+GKT  L +RV  ++    A PS +LC+T T  A 
Sbjct: 1   MSMNEQQELLINELEKNVILLASAGTGKTETLSKRVANIIDKGKAEPSQILCITFTNKAC 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+  I+ A         + +IT                              V+T
Sbjct: 61  KEIRERIEGIVGAS--------AKDIT------------------------------VKT 82

Query: 136 IHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            H+FC + I Q+     ++ + F I DEE  ++L++
Sbjct: 83  FHSFCFDVIKQEAKKGTDVFTDFTIFDEEDCRELVK 118


>gi|219853971|ref|YP_002471093.1| hypothetical protein CKR_0628 [Clostridium kluyveri NBRC 12016]
 gi|251764517|sp|B9DZK4|ADDA_CLOK1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|219567695|dbj|BAH05679.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1238

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 25/146 (17%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEII 86
           P  +  V+A AG+GKT +LV+R+L+ ++ ++       LL +T T AAA+EM  RV E +
Sbjct: 19  PNCNLLVAAGAGTGKTAVLVERILQKVINDSEEVDIDKLLVVTFTNAAASEMKERVGEAL 78

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           +       ++L    T            SK     + +L       + TIH+FC  +++ 
Sbjct: 79  S-------KLLELNCT------------SKNLQRQLALLNQSN---IMTIHSFCLKVIKN 116

Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172
                ++  +F I D+ +SK L ++A
Sbjct: 117 NFHRIDLDPNFRICDDTESKLLKQDA 142


>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 870

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 49/211 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++   N+ PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +         EIT                              ++
Sbjct: 61  CKEMSDRVMKIVGGEAK--------EIT------------------------------IR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142

Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215
                 A  E LE    ++ +T+I +I   R
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173


>gi|153004223|ref|YP_001378548.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152027796|gb|ABS25564.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 1196

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 20/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           VSA AGSGKT  LV+   RLL   A      P+ +  +T T+ AA E++ R         
Sbjct: 25  VSAGAGSGKTTALVELCARLLSGEALGTPCAPAEIAAITFTEKAAEELAQR--------- 75

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                 L   + +           S+A    +  L+    L   TIH FC  ++++   E
Sbjct: 76  ------LRGAVAERARAACEADPGSEAARAWLERLDGLERLSAGTIHGFCGRLLREHAPE 129

Query: 151 ANITSHFAIADEEQS 165
           A +   FA+ADEE+S
Sbjct: 130 AGLDPEFAVADEERS 144


>gi|299749616|ref|XP_002911398.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130]
 gi|298408518|gb|EFI27904.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130]
          Length = 966

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 42/159 (26%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTH 70
           DL+    S QL A+   P  S  + A  GSGKT +L  R+  L+  N H  P+++  +T 
Sbjct: 4   DLLKGLNSAQLKAATYPPNTSLQILAGPGSGKTRVLTTRIAHLI-TNCHLPPNSICAVTF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R                   +TK+ GK                  E    
Sbjct: 63  TNKAANEMKER-------------------LTKLLGK------------------ERTAQ 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           LK+ T H+ C   ++++  + ++  +F + D  +SKK+I
Sbjct: 86  LKLGTFHSLCARFLRKYSKQVSVPDNFTVCDAGESKKMI 124


>gi|116873698|ref|YP_850479.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123466555|sp|A0AL18|ADDA_LISW6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116742576|emb|CAK21700.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 1235

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 25/127 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+    N +   LL +T T A+AAEM +R+ + +      
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLVDETGNLNVDELLIVTFTNASAAEMKYRIGKSL------ 84

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +E LS        + P+ S + K   LL           + T+H+FC  I+++   EA+
Sbjct: 85  -EEALS--------QNPDSSHLKKQVALL-------NYASISTLHSFCLEIIRKHYFEAD 128

Query: 153 ITSHFAI 159
           I  +F +
Sbjct: 129 IDPNFRL 135


>gi|330959506|gb|EGH59766.1| putative UvrD helicase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 1144

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           LA DP RS  + A AGSGKT  L  R+L  L     P  +L +T T  AAAE+  RV+  
Sbjct: 56  LAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVDRPEEVLAITFTNMAAAEIVERVIGA 115

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   +   +  L+ E+ +    +  +  + + + +   +L  P  L++ T  +FC ++  
Sbjct: 116 LQQAATGIEPELAHELPQY---RLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCASLAS 172

Query: 146 QFPLEANI 153
           + P+ + +
Sbjct: 173 KTPIMSGL 180


>gi|188582350|ref|YP_001925795.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179345848|gb|ACB81260.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 1047

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           RS  V A AGSGKT ++  R+  +L     P ++  +T T+ AA+E+  RV E +     
Sbjct: 23  RSILVEAGAGSGKTAVMAGRIAAMLAEGVAPRSIAAVTFTELAASELLSRVREFV----- 77

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            +D  +    T+++   P+    +  R  L         +   TIH FC+ +++ +P EA
Sbjct: 78  -ADLSVGTIATELRVALPDGLTQTH-RDNLAAASAAIDEITCSTIHGFCQRLIKPYPAEA 135

Query: 152 NITSHFAIADEEQS 165
           +I    ++ D   +
Sbjct: 136 DIDPGASVMDRNHA 149


>gi|218560877|ref|YP_002393790.1| DNA-dependent helicase II [Escherichia coli S88]
 gi|218367646|emb|CAR05431.1| DNA-dependent ATPase I and helicase II [Escherichia coli S88]
          Length = 720

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMTVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|82779008|ref|YP_405357.1| DNA-dependent helicase II [Shigella dysenteriae Sd197]
 gi|309784529|ref|ZP_07679167.1| DNA helicase II [Shigella dysenteriae 1617]
 gi|81243156|gb|ABB63866.1| DNA-dependent ATPase I and helicase II [Shigella dysenteriae Sd197]
 gi|308927635|gb|EFP73104.1| DNA helicase II [Shigella dysenteriae 1617]
          Length = 720

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|329297035|ref|ZP_08254371.1| DNA-dependent helicase II [Plautia stali symbiont]
          Length = 720

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL++    +Q  A + P  +  V A AGSGKT +LV R+  LL + N  P +++ +T T 
Sbjct: 5   DLLNGLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+ ++I                                        + GG+ 
Sbjct: 65  KAAAEMRHRIDQLIGT--------------------------------------SQGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           + T H     +++   L+A +   F I D E   +L++
Sbjct: 87  IGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124


>gi|218692089|ref|YP_002400301.1| DNA-dependent helicase II [Escherichia coli ED1a]
 gi|218429653|emb|CAR10617.2| DNA-dependent ATPase I and helicase II [Escherichia coli ED1a]
          Length = 720

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDTEDQLRLLK 124


>gi|317046397|ref|YP_004114045.1| DNA helicase II [Pantoea sp. At-9b]
 gi|316948014|gb|ADU67489.1| DNA helicase II [Pantoea sp. At-9b]
          Length = 720

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL++    +Q  A + P  +  V A AGSGKT +LV R+  LL + N  P +++ +T T 
Sbjct: 5   DLLNGLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+ ++I                                        + GG+ 
Sbjct: 65  KAAAEMRHRIDQLIGT--------------------------------------SQGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           + T H     +++   L+A +   F I D E   +L++
Sbjct: 87  IGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124


>gi|147677999|ref|YP_001212214.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
           thermopropionicum SI]
 gi|251764536|sp|A5D1P3|ADDA_PELTS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|146274096|dbj|BAF59845.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 1269

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 25/133 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A+AG+GKT +L +R++R +     P     LL +T T AAAAEM  R+         L
Sbjct: 36  VAASAGTGKTAVLAERIIRRITDPIKPVDVDRLLVVTFTSAAAAEMRERI--------RL 87

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +   L+ EI+    ++P    + +   LL       G   + T+H+FC  +++Q      
Sbjct: 88  A---LAREIS----RRPESGHLQRQAALL-------GRACISTVHSFCLDLLRQHFYRIG 133

Query: 153 ITSHFAIADEEQS 165
           +   F +ADE ++
Sbjct: 134 LDPSFRVADETEA 146


>gi|295111139|emb|CBL27889.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Synergistetes
           bacterium SGP1]
          Length = 1213

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 28/152 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AG+GKT +L  R  RLLL +A   P  +L LT+T AAA EM  R+ + + A   + 
Sbjct: 36  VGAGAGTGKTWVLSNRYARLLLTDADCLPCDILTLTYTDAAAGEMRRRIEDRVRALMDVP 95

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D  +S E  +                    +LE      + TIHAF   ++++  L  ++
Sbjct: 96  DAPVSQERRR-------------------EVLEGFSEAWISTIHAFAARLVRESGLALDV 136

Query: 154 TSHFAIADEEQSKKL-------IEEAKKSTLA 178
               A+    Q+++        +EEA    LA
Sbjct: 137 DPRSAVVSGPQTERFWARVRDALEEAGLGELA 168


>gi|167761630|ref|ZP_02433757.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704]
 gi|167660773|gb|EDS04903.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704]
          Length = 1200

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 25/155 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ TK +Q +     R+  VSA AGSGKT +LV+R++ +L  +  P     LL +T T+A
Sbjct: 3   VTWTKEQQKVIDLRNRNILVSAAAGSGKTAVLVERIITMLTEDESPVDVDRLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                  I K   + P    + +   L+          ++
Sbjct: 63  AAAEMKERI---------------RNAIEKKLEEYPGNEHLKQQATLI-------HNAQI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
            TIH+FC ++++      +I   F I +E + K L
Sbjct: 101 TTIHSFCLSVIRDHFHAIDIDPGFRIGEEGELKLL 135


>gi|152990115|ref|YP_001355837.1| putative recombination protein RecB [Nitratiruptor sp. SB155-2]
 gi|151421976|dbj|BAF69480.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp.
           SB155-2]
          Length = 855

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 13/127 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AG+GKT+ L    L  L   A+P  ++ +T T  AA EM  RV++ +     L +E
Sbjct: 6   LKASAGTGKTYSLALYYLARLFEGANPYDIVAITFTNKAANEMRERVIDFLF---DLDEE 62

Query: 96  ILSAEITKIQGKKPNKSDMSKA---RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            L  +I  I  K P    M +    R  L++       L + TI AF + I+++F   A+
Sbjct: 63  KLE-QIASIIQKDPKTLSMKQQQVIRKFLVS------RLNILTIDAFVQKILRKFAFFAS 115

Query: 153 ITSHFAI 159
           ++  F I
Sbjct: 116 LSPDFTI 122


>gi|291531717|emb|CBK97302.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Eubacterium siraeum
           70/3]
          Length = 1235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 27/154 (17%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           A VSA AGSGKT +L QRV+RL+     N  PS ++ +T T  AA E+  R+  ++    
Sbjct: 18  AIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTVKAADELKARLDALMR--Q 75

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPL 149
            +++ + SA++  ++ ++     + KAR              + TI +FC +++++   L
Sbjct: 76  RINEAVSSADVRFLRNQRMR---LRKAR--------------ISTISSFCISLLRENIDL 118

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             NI++ F++ DE     L    K   L+ ++ D
Sbjct: 119 ADNISAGFSVIDETAGGAL----KNDVLSDVLED 148


>gi|313207052|ref|YP_004046229.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868]
 gi|312446368|gb|ADQ82723.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868]
 gi|315022554|gb|EFT35581.1| ATP-dependent helicase [Riemerella anatipestifer RA-YM]
 gi|325335511|gb|ADZ11785.1| UvrD/REP helicase [Riemerella anatipestifer RA-GD]
          Length = 1044

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 11/134 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +SA+AGSGKT+ LV R+L L L          +L LT T  AA EM  R+L+ + A++  
Sbjct: 7   ISASAGSGKTYTLVIRILSLCLRTPDEKAIRYILALTFTNKAANEMKERILQWLEAFTR- 65

Query: 93  SDEILSAEITKI------QGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
            D + + E+  I      QG K    D+  +++ +L  IL     L + TI  F   +++
Sbjct: 66  EDYLQNNELKAIQSYLETQGIKLTIEDLHYRSKKVLDYILHHYSILNIGTIDKFNAKLVR 125

Query: 146 QFPLEANITSHFAI 159
            F  E  +  +F +
Sbjct: 126 SFSYELGLAQNFNL 139


>gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
          Length = 867

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 40/153 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            K +QLL ++   +  + A+AG+GKT  L +R+ R++ +    P  +LC+T T  A  EM
Sbjct: 8   NKEQQLLINEDENNILLLASAGTGKTDTLSKRIARIIESGKGKPEEILCITFTNKACREM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ ++I   S                                        + ++T H+
Sbjct: 68  KERIEKVIGDSSR--------------------------------------NITIRTFHS 89

Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIE 170
           FC  I++ +   + +I + F I DEE  K++I+
Sbjct: 90  FCFDILKVEAKKKTDIFTDFIIFDEEDCKEMIK 122


>gi|300930020|ref|ZP_07145453.1| DNA helicase II [Escherichia coli MS 187-1]
 gi|300462110|gb|EFK25603.1| DNA helicase II [Escherichia coli MS 187-1]
          Length = 700

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 1   PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ V T H     +++   
Sbjct: 61  --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82

Query: 149 LEANITSHFAIADEEQSKKLIE 170
           ++AN+   F I D E   +L++
Sbjct: 83  MDANLPQDFQILDSEDQLRLLK 104


>gi|164687184|ref|ZP_02211212.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM
           16795]
 gi|164603608|gb|EDQ97073.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM
           16795]
          Length = 1349

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 39/179 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAA 76
           T+ +Q +      +  V+A AGSGKT +LV+R+++++L +        LL +T T AAA+
Sbjct: 7   TQEQQNVIDSRGGNLLVAAAAGSGKTAVLVERIIQMILNSDLKIDIDKLLVVTFTNAAAS 66

Query: 77  EMSHRVLEIITAW-------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           EM  R+ + I+          HL D+++                ++KA            
Sbjct: 67  EMRERIGDAISKKLDENPEDEHLQDQLVL---------------LNKA------------ 99

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
              + TIH+FC  +++    + N+  +F I DE +   +  EA   T   +   N+EE 
Sbjct: 100 --SITTIHSFCLEVIKSNFHKINLDPNFRIGDETECSLMKLEAIDETFDILYEQNDEEF 156


>gi|223936289|ref|ZP_03628202.1| recombination helicase AddA [bacterium Ellin514]
 gi|223895151|gb|EEF61599.1| recombination helicase AddA [bacterium Ellin514]
          Length = 1211

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 29/179 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V A AG+GKT  LV+R L  L+    P++L   L +T T AAAAEM  R+          
Sbjct: 19  VVAGAGTGKTRTLVERCLHCLVEEKPPTSLDEILMVTFTDAAAAEMRQRI---------- 68

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               L  E+ K      +  D+     L  TI +T     + T+H+FC  +++Q   E  
Sbjct: 69  -RARLEQELAK------HTDDLRWTEQL--TIFDTA---HIGTLHSFCLQLVRQHFYELE 116

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---DEDIETLI 208
           +     +  EE+++ L +E  ++ L S     + E  +A  +++++     D+ I TL+
Sbjct: 117 LDPQLTVLPEEEARLLADETLENLLQS-HYAGDAEGAEAVQQLIQVQGRGWDQPIRTLV 174


>gi|261749252|ref|YP_003256937.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497344|gb|ACX83794.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 855

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 20/138 (14%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEII 86
           P+     +A+AGSGKT  LV+  L LLL + HP     +L +T T  A+ E+  R+L+ I
Sbjct: 9   PSTLKIYNASAGSGKTFFLVKNYLYLLLKSPHPEEFKRILAITFTNKASEEIKKRILQCI 68

Query: 87  TAWSH---------LSDEIL-SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
             +S+         L D +  S ++TK Q          +++++L  IL+      + TI
Sbjct: 69  KEFSNQKIRKEYHFLFDHLTKSLKLTKDQL-------FERSKNILYAILDDFSSFSISTI 121

Query: 137 HAFCEAIMQQFPLEANIT 154
             F    ++ F  + NI 
Sbjct: 122 DKFTYRTIRSFLYKKNIN 139


>gi|169237545|ref|YP_001690749.1| putative helicase [Halobacterium salinarum R1]
 gi|167728772|emb|CAP15640.1| putative helicase [Halobacterium salinarum R1]
          Length = 1211

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 21/155 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAA 76
           Q   EQ  A    R+  ++A AG+GKT  L +R + +L  N    P  ++ +T T+ AAA
Sbjct: 9   QLTEEQEDALVQGRNVAITAGAGTGKTTTLTERYVTILAENPSLTPENIITITFTRKAAA 68

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E++ RV E       + D + +              D  +A +    +L+      V TI
Sbjct: 69  ELTERVRE------EVYDRLEAV-------------DSPEAYNRWRNVLDDLEDGYVHTI 109

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           HAFC  ++++  +EA +   F + DE+ +  L  E
Sbjct: 110 HAFCARLLRERAVEAPVPLGFDVLDEDGAATLQRE 144


>gi|283780044|ref|YP_003370799.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283438497|gb|ADB16939.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 1049

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 10/145 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AG+GKT+ L    L+LL+    P  +L  T T+ AA E+  R+L +  A + L+DE
Sbjct: 17  IRASAGTGKTYRLTGHYLQLLVDGVPPRNILATTFTRKAAGEIFDRIL-LRLAQAALTDE 75

Query: 96  I---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               L+A I + Q        ++K + LL +IL     L+V T+ +F   I     LE +
Sbjct: 76  ACQQLAAAIARPQ------LTVTKCQELLTSILSQLDALQVGTLDSFFARIATSLALELS 129

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL 177
           +   ++I + E+  ++  +A ++ L
Sbjct: 130 LPLGWSICEYEEDLRMRRDAIEAVL 154


>gi|291563998|emb|CBL42814.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
          SS3/4]
          Length = 656

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 32/50 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A  GSGKT ++  R+ RLL A   PS +L +T TKAAAAEM  R L +
Sbjct: 20 VLAGPGSGKTTVITHRIKRLLEAGVDPSGILVITFTKAAAAEMKERFLRL 69


>gi|256848517|ref|ZP_05553959.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN]
 gi|256714784|gb|EEU29763.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN]
          Length = 1281

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 28/146 (19%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEI 85
           +D  R   VSA+AGSGKT +LV RV++LL  N H +   +L +T TK AA  M  R+ + 
Sbjct: 15  NDRDRDILVSASAGSGKTAVLVDRVVKLLKENRHLNIDEMLLVTFTKEAAKNMRERIRKR 74

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           + A S  +D+ +  +I ++                            + TIH+FCE +++
Sbjct: 75  LVADS--NDQHMKTQINRL------------------------ALANISTIHSFCEQVIK 108

Query: 146 QFPLEANITSHFAIADEEQSKKLIEE 171
           ++     +   + +  +   + L++E
Sbjct: 109 RYYYVIGLDPQYRLVTDATEQALLKE 134


>gi|210617937|ref|ZP_03291823.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787]
 gi|210149076|gb|EEA80085.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787]
          Length = 1217

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 25/140 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R+  VSA AGSGKT +LV+R++  L  + +P     LL +T+T+AAA+EM  R+      
Sbjct: 18  RNILVSAAAGSGKTAVLVERIITRLTKDQNPIDVDQLLIVTYTEAAASEMKERI------ 71

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       I K   + P+   + +   L+ +        +V TIH+FC ++++ + 
Sbjct: 72  ---------RTAIEKALEENPDNVHLQRQATLIHSA-------QVTTIHSFCLSVIRDYF 115

Query: 149 LEANITSHFAIADEEQSKKL 168
              ++   F IA+E + K L
Sbjct: 116 HTIDLDPGFRIAEEGELKLL 135


>gi|238918094|ref|YP_002931608.1| DNA-dependent helicase II [Edwardsiella ictaluri 93-146]
 gi|238867662|gb|ACR67373.1| DNA helicase II, putative [Edwardsiella ictaluri 93-146]
          Length = 719

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPFSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+  +I                                        + G
Sbjct: 62  FTNKAAAEMRHRIEALIGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   L+A +   F I D E   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124


>gi|298241785|ref|ZP_06965592.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297554839|gb|EFH88703.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 765

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           I+ ++  +    +A     +A+++A AG+GKT ILVQR++RL+      P  +LC+T T+
Sbjct: 22  IEFVANPQQAAAIAHTDGPAAFIAA-AGTGKTAILVQRLVRLIADVGVAPEAILCVTFTR 80

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
           AAA EM  R L+ + A   L  ++ +  +    G
Sbjct: 81  AAAEEMEKRALKSLKARGLLIKDLKALRVVTFHG 114


>gi|292897919|ref|YP_003537288.1| DNA helicase II [Erwinia amylovora ATCC 49946]
 gi|291197767|emb|CBJ44862.1| DNA helicase II [Erwinia amylovora ATCC 49946]
          Length = 720

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                          G
Sbjct: 62  FTNKAAAEMRHRIEQLIGT--------------------------------------RQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+A +   F I D E   +L++   K+
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLLKRLIKA 129


>gi|269137484|ref|YP_003294184.1| DNA-dependent helicase II [Edwardsiella tarda EIB202]
 gi|267983144|gb|ACY82973.1| DNA-dependent helicase II [Edwardsiella tarda EIB202]
 gi|304557557|gb|ADM40221.1| ATP-dependent DNA helicase UvrD/PcrA [Edwardsiella tarda FL6-60]
          Length = 719

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPFSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+  +I                                        + G
Sbjct: 62  FTNKAAAEMRHRIEALIGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++   L+A +   F I D E   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124


>gi|238916498|ref|YP_002930015.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
 gi|238871858|gb|ACR71568.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
          Length = 1220

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 29/165 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R++ ++     N     L+ +T TKAAAA+M  ++ +   A   +
Sbjct: 24  VSAAAGSGKTAVLVERIISMITDPDKNIDIDRLVVVTFTKAAAAQMKDKIRK---ALDSM 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            DE              N  D++  R   IT+L      ++ TI +FC  I++    E N
Sbjct: 81  LDE--------------NPGDVNLLRQ--ITLLNNA---QITTIDSFCLWIIRNHFPEVN 121

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +   F I DE + KKLIE      L  ++ +   E  + F+ +++
Sbjct: 122 LDPGFRIMDEGE-KKLIE---NDVLEDVLEEFYAEADEEFFNLVD 162


>gi|160938156|ref|ZP_02085512.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438960|gb|EDP16716.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1331

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 25/195 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ T  +Q +     R+  VSA AGSGKT +LV+R+++++     P     LL +T T A
Sbjct: 3   VNWTSKQQEVIDSRNRNLLVSAAAGSGKTAVLVERIIQMISEGDRPLDIDQLLVMTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                A + +   ++P      +  HL +     P   ++
Sbjct: 63  AAAEMRERI---------------GAAVEQKLKERP------EDEHLWLQAALIPQA-QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  I++      +I   F I DE +   L  +     L +   + +EE  +   
Sbjct: 101 TTIDSFCLNIIRSHYNSLDIDPAFRIGDEGELSLLRGDCMGEMLENCYDEADEEFGRFVE 160

Query: 194 EILEISNDEDIETLI 208
                 +D  IE +I
Sbjct: 161 HFGRGKSDRGIEDVI 175


>gi|20806785|ref|NP_621956.1| ATP-dependent exoDNAse beta subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|81590788|sp|Q8RCZ0|ADDA_THETN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|20515247|gb|AAM23560.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 1204

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 38/206 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           ++  V+A AGSGKT +LV+R++ ++     P     LL +T T AAA+EM  R+ E + +
Sbjct: 18  KNVLVAAAAGSGKTAVLVERIINIVTDPEKPVDIDRLLVVTFTNAAASEMRERIAERLIS 77

Query: 89  W--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
               H  D+ L+ ++T +     NK+ ++                   TIH+FC  ++++
Sbjct: 78  LLDQHPEDKRLADQLTLL-----NKATIT-------------------TIHSFCLDVVRK 113

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
                ++   F + D+ ++  L  EA +     +   N+E     F  ++E       + 
Sbjct: 114 HFFLLDLDPSFRVGDDTETLLLKLEAMEELFEELYEKNDE----GFLLLVESYGGTKGDQ 169

Query: 207 LISDIISNRTALKLIFFFFSYLWRRK 232
            + D++     LKL  F  S  W  K
Sbjct: 170 YLQDVL-----LKLYGFIRSLPWPEK 190


>gi|21666098|gb|AAM73555.1| DNA helicase II [Escherichia coli]
 gi|21666100|gb|AAM73556.1| DNA helicase II [Escherichia coli]
 gi|21666102|gb|AAM73557.1| DNA helicase II [Escherichia coli]
 gi|21666104|gb|AAM73558.1| DNA helicase II [Escherichia coli]
 gi|21666106|gb|AAM73559.1| DNA helicase II [Escherichia coli]
 gi|21666108|gb|AAM73560.1| DNA helicase II [Escherichia coli]
 gi|21666110|gb|AAM73561.1| DNA helicase II [Escherichia coli]
 gi|21666112|gb|AAM73562.1| DNA helicase II [Escherichia coli]
 gi|21666116|gb|AAM73564.1| DNA helicase II [Escherichia coli]
 gi|21666118|gb|AAM73565.1| DNA helicase II [Escherichia coli]
 gi|21666120|gb|AAM73566.1| DNA helicase II [Escherichia coli]
 gi|21666122|gb|AAM73567.1| DNA helicase II [Escherichia coli]
 gi|21666124|gb|AAM73568.1| DNA helicase II [Escherichia coli]
 gi|21666126|gb|AAM73569.1| DNA helicase II [Escherichia coli]
 gi|21666128|gb|AAM73570.1| DNA helicase II [Escherichia coli]
 gi|21666130|gb|AAM73571.1| DNA helicase II [Escherichia coli]
 gi|21666132|gb|AAM73572.1| DNA helicase II [Escherichia coli]
 gi|21666134|gb|AAM73573.1| DNA helicase II [Escherichia coli]
 gi|21666136|gb|AAM73574.1| DNA helicase II [Escherichia coli]
 gi|21666138|gb|AAM73575.1| DNA helicase II [Escherichia coli]
 gi|21666140|gb|AAM73576.1| DNA helicase II [Escherichia coli]
 gi|21666142|gb|AAM73577.1| DNA helicase II [Escherichia coli]
 gi|21666144|gb|AAM73578.1| DNA helicase II [Escherichia coli]
 gi|21666146|gb|AAM73579.1| DNA helicase II [Escherichia coli]
 gi|21666148|gb|AAM73580.1| DNA helicase II [Escherichia coli]
 gi|21666150|gb|AAM73581.1| DNA helicase II [Escherichia coli]
 gi|21666152|gb|AAM73582.1| DNA helicase II [Escherichia coli]
 gi|21666154|gb|AAM73583.1| DNA helicase II [Escherichia coli]
 gi|21666156|gb|AAM73584.1| DNA helicase II [Escherichia coli]
 gi|21666159|gb|AAM73585.1| DNA helicase II [Escherichia coli]
 gi|21666161|gb|AAM73586.1| DNA helicase II [Escherichia coli]
 gi|21666163|gb|AAM73587.1| DNA helicase II [Escherichia coli]
 gi|21666165|gb|AAM73588.1| DNA helicase II [Escherichia coli]
 gi|21666167|gb|AAM73589.1| DNA helicase II [Escherichia coli]
 gi|21666169|gb|AAM73590.1| DNA helicase II [Escherichia coli]
 gi|21666171|gb|AAM73591.1| DNA helicase II [Escherichia coli]
 gi|21666173|gb|AAM73592.1| DNA helicase II [Escherichia coli]
 gi|21666175|gb|AAM73593.1| DNA helicase II [Escherichia coli]
 gi|21666177|gb|AAM73594.1| DNA helicase II [Escherichia coli]
 gi|21666179|gb|AAM73595.1| DNA helicase II [Escherichia coli]
 gi|21666181|gb|AAM73596.1| DNA helicase II [Escherichia coli]
 gi|21666183|gb|AAM73597.1| DNA helicase II [Escherichia coli]
 gi|21666185|gb|AAM73598.1| DNA helicase II [Escherichia coli]
 gi|21666187|gb|AAM73599.1| DNA helicase II [Escherichia coli]
 gi|21666189|gb|AAM73600.1| DNA helicase II [Escherichia coli]
 gi|21666191|gb|AAM73601.1| DNA helicase II [Escherichia coli]
 gi|21666193|gb|AAM73602.1| DNA helicase II [Escherichia coli]
 gi|21666195|gb|AAM73603.1| DNA helicase II [Escherichia coli]
 gi|21666197|gb|AAM73604.1| DNA helicase II [Escherichia coli]
 gi|21666199|gb|AAM73605.1| DNA helicase II [Escherichia coli]
 gi|21666202|gb|AAM73606.1| DNA helicase II [Escherichia coli]
 gi|21666204|gb|AAM73607.1| DNA helicase II [Escherichia coli]
 gi|21666206|gb|AAM73608.1| DNA helicase II [Escherichia coli]
 gi|21666208|gb|AAM73609.1| DNA helicase II [Escherichia coli]
 gi|21666211|gb|AAM73610.1| DNA helicase II [Escherichia coli]
 gi|21666213|gb|AAM73611.1| DNA helicase II [Escherichia coli]
 gi|21666215|gb|AAM73612.1| DNA helicase II [Escherichia coli]
 gi|21666217|gb|AAM73613.1| DNA helicase II [Escherichia coli]
 gi|21666219|gb|AAM73614.1| DNA helicase II [Escherichia coli]
 gi|21666223|gb|AAM73616.1| DNA helicase II [Escherichia coli]
 gi|21666225|gb|AAM73617.1| DNA helicase II [Escherichia coli]
 gi|21666227|gb|AAM73618.1| DNA helicase II [Escherichia coli]
 gi|21666229|gb|AAM73619.1| DNA helicase II [Escherichia coli]
 gi|21666231|gb|AAM73620.1| DNA helicase II [Escherichia coli]
 gi|21666233|gb|AAM73621.1| DNA helicase II [Escherichia coli]
 gi|21666236|gb|AAM73622.1| DNA helicase II [Escherichia coli]
 gi|21666238|gb|AAM73623.1| DNA helicase II [Escherichia coli]
 gi|21666240|gb|AAM73624.1| DNA helicase II [Escherichia coli]
 gi|21666242|gb|AAM73625.1| DNA helicase II [Escherichia coli]
 gi|21666244|gb|AAM73626.1| DNA helicase II [Escherichia coli]
          Length = 133

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 39/147 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 1   PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ V T H     +++   
Sbjct: 61  --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175
           ++AN+   F I D E   +L++   K+
Sbjct: 83  MDANLPQDFQILDSEDQLRLLKRLIKA 109


>gi|289450290|ref|YP_003475636.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184837|gb|ADC91262.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 1448

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 50/225 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAA 75
           I+ T  +Q + + P  +  VSA+AGSGKT +L +R+L  LL      + L+ +T T+AAA
Sbjct: 5   INFTAEQQAVLTAPIGNILVSASAGSGKTAVLTERILEHLLSGQTELNRLVVVTFTEAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  ++   I A              KI    P+++ + + +   +       G  + T
Sbjct: 65  KQMKDKIRRKILA--------------KIPSCCPDEAAILQDQMAYMP------GADIST 104

Query: 136 IHAFCEAIMQQF----------PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD-N 184
           +HAFC+ I+++F          PL   + + F   D  ++  L+++A    L  I +  +
Sbjct: 105 MHAFCKKIIKEFIYVLRDDKGNPL---LDTEFKTLDGTEAALLLQQALDDVLNQIYVGID 161

Query: 185 NEELKK---------------AFYEILEISNDEDIETLISDIISN 214
           + EL K               AFY +L+  +    +  + +++SN
Sbjct: 162 HGELPKICWDFVGLSPAAAQMAFYRLLDSCDFNGDDAALRELLSN 206


>gi|260662573|ref|ZP_05863468.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN]
 gi|260553264|gb|EEX26207.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN]
          Length = 1337

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 37/172 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----LLANAHPST------L 65
           + + +K ++   +D  +   VSA+AGSGKT +LV+RV++L    L  +A PS       +
Sbjct: 2   VFTPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDI 61

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA  M  R+   +      +DE + A++               AR  L  I 
Sbjct: 62  LMVTFTTDAAKNMRDRIRRRLVG---ATDEHMKAQV---------------ARLALANI- 102

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
                    TIH+FCE +++++    ++   F + D+ + + L E+A + TL
Sbjct: 103 --------STIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQVTL 146


>gi|291303528|ref|YP_003514806.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
           44728]
 gi|290572748|gb|ADD45713.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
           44728]
          Length = 762

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 47/156 (30%)

Query: 28  SDPTRSA--------WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           +DP R A         + A AGSGKT +L QR+  L+ +   HP  +L +T T  AAAEM
Sbjct: 24  NDPQRQAVLHEGPPLLIVAGAGSGKTRVLTQRIAHLVAVRGVHPGEILAITFTNKAAAEM 83

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                       N++ M                + V T HA
Sbjct: 84  RDRVSSVVG----------------------NRARM----------------MWVLTFHA 105

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            C  I+++     N+ S F + D + S++L+++  +
Sbjct: 106 ACMRILRREHERLNLKSTFTVYDSDDSRRLMQQVAR 141


>gi|312170748|emb|CBX79010.1| DNA helicase II [Erwinia amylovora ATCC BAA-2158]
          Length = 723

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 7   SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMAVT 64

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                          G
Sbjct: 65  FTNKAAAEMRHRIEQLIGT--------------------------------------RQG 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+A +   F I D E   +L++   K+
Sbjct: 87  GMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLLKRLIKA 132


>gi|292486682|ref|YP_003529552.1| DNA helicase II [Erwinia amylovora CFBP1430]
 gi|291552099|emb|CBA19136.1| DNA helicase II [Erwinia amylovora CFBP1430]
          Length = 723

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 7   SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMAVT 64

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ ++I                                          G
Sbjct: 65  FTNKAAAEMRHRIEQLIGT--------------------------------------RQG 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ + T H     +++   L+A +   F I D E   +L++   K+
Sbjct: 87  GMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLLKRLIKA 132


>gi|331002448|ref|ZP_08325966.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330410264|gb|EGG89698.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 1148

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 21/148 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T+++Q        S  VSA AGSGKT +LV+R+++ +  + +P    +LL +T T+AAAA
Sbjct: 3   TEAQQAAIDIKKGSILVSAAAGSGKTAVLVERIIKKITDSKNPIDVDSLLVMTFTRAAAA 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
            M  +              I +A + +++  + N  +  + +   I +       K+ T 
Sbjct: 63  SMKEK--------------IYNALLKEMEKYENNTKEFKRLKEQSILL----SSAKIMTT 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164
            +FC +I+++   + +I   F +ADE +
Sbjct: 105 DSFCLSIIKENIDKIDIDQAFNVADESE 132


>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 876

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 49/211 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++   N+ PS +LC+T T  A
Sbjct: 7   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+           + EIT                              ++
Sbjct: 67  CKEMSDRVMKIVGGE--------AKEIT------------------------------IR 88

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 89  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 148

Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215
                 A  E LE    ++ +T+I +I   R
Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 179


>gi|110799297|ref|YP_694494.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC
           13124]
 gi|122959147|sp|Q0TV46|ADDA_CLOP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|110673944|gb|ABG82931.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC
           13124]
          Length = 1271

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+          
Sbjct: 22  VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I+K   K P+   + +   LL           + T+H+FC E I   F L  
Sbjct: 72  -----GDAISKALEKDPSSEALQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++   F I D+ +     E  K+  LA +  D   +  + F +++E       +  ++ I
Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174

Query: 212 ISNRTALKLIFFFFSYLW 229
           I     LK   F  S  W
Sbjct: 175 I-----LKFYNFIMSGPW 187


>gi|295109449|emb|CBL23402.1| recombination helicase AddA, Firmicutes type [Ruminococcus obeum
           A2-162]
          Length = 1241

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 25/172 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T+ +Q + S   R+  VSA AGSGKT +LV+R+L  +     P     LL +T T+AAA 
Sbjct: 6   TEEQQKVISLRDRNILVSAAAGSGKTAVLVERILSKICDPKKPVDIDRLLIMTFTRAAAG 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+               SA I +     P+   + +   L+          ++ TI
Sbjct: 66  EMKERI---------------SAAIEQKLYDNPDNEHLQRQTSLI-------HNAQITTI 103

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             FC  I++ +    ++   +  A+E + K L E+  K  L       +E+ 
Sbjct: 104 DGFCAYIIRNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEEAYAQKDEKF 155


>gi|227357154|ref|ZP_03841523.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906]
 gi|227162686|gb|EEI47653.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906]
          Length = 718

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 39/147 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  LL +  A P +++ +T T  AAAEM HR+ ++I  
Sbjct: 21  PRVNMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGT 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ + T H+    +++   
Sbjct: 81  --------------------------------------SQGGMWIGTFHSLAHRLLRAHY 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175
           L+A +   F I D +   +LI    KS
Sbjct: 103 LDAGLPQDFQIIDSDDQYRLIRRIVKS 129


>gi|322379132|ref|ZP_08053529.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
 gi|322380437|ref|ZP_08054639.1| ATP-dependent helicase [Helicobacter suis HS5]
 gi|321147148|gb|EFX41846.1| ATP-dependent helicase [Helicobacter suis HS5]
 gi|321148428|gb|EFX42931.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
          Length = 900

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA------- 88
           + A+AGSGKT  L  R + LL   A P+T+L LT T  AA+EM  R+   + +       
Sbjct: 13  LKASAGSGKTFALTLRYIALLFEGAKPNTILTLTFTNKAASEMRERIYNTLASLHTESQI 72

Query: 89  WSH-----LSDEILSAEITKIQGKKPNKS---DMSKARHLLITILETPGGLKVQTIHAFC 140
           W+       SD  + A +  +Q K  N S      K+  +    L+      +QTI AF 
Sbjct: 73  WARNKKYIPSDSKIQAILESLQ-KNYNLSWSQIAPKSEDVYTQFLKADPA--IQTIDAFF 129

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKL 168
           + ++++F     + S F +++  +  KL
Sbjct: 130 QKVLRKFSYFVGVRSEFQVSNVSKEDKL 157


>gi|227514157|ref|ZP_03944206.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum
           ATCC 14931]
 gi|227087528|gb|EEI22840.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum
           ATCC 14931]
          Length = 1337

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 37/172 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----LLANAHPST------L 65
           + + +K ++   +D  +   VSA+AGSGKT +LV+RV++L    L  +A PS       +
Sbjct: 2   VFTPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDI 61

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA  M  R+   +      +DE + A++               AR  L  I 
Sbjct: 62  LMVTFTTDAAKNMRDRIRRRLVG---ATDEHMKAQV---------------ARLALANI- 102

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
                    TIH+FCE +++++    ++   F + D+ + + L E+A + TL
Sbjct: 103 --------STIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQVTL 146


>gi|197287153|ref|YP_002153025.1| DNA-dependent helicase II [Proteus mirabilis HI4320]
 gi|194684640|emb|CAR46555.1| DNA helicase II [Proteus mirabilis HI4320]
          Length = 718

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 43/158 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  LL +  A P +++ +T T  AAAEM HR+ ++I  
Sbjct: 21  PRVNMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGT 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ + T H+    +++   
Sbjct: 81  --------------------------------------SQGGMWIGTFHSLAHRLLRAHY 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           L+A +   F I D +   +LI    +  + S+ LD+ +
Sbjct: 103 LDAGLPQDFQIIDSDDQYRLI----RRIVKSMALDDKQ 136


>gi|238926789|ref|ZP_04658549.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei
           ATCC 43531]
 gi|238885321|gb|EEQ48959.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei
           ATCC 43531]
          Length = 1260

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 26/182 (14%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTK 72
           D ++ T  +Q        +  V+A AGSGKT +LV+R++   + N   S   +L LT TK
Sbjct: 3   DRLTFTADQQRAIDARGHNILVAAAAGSGKTRVLVERIIS-QVRNEELSLDRILVLTFTK 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGG 130
           AAA EM  R+           +  L+AEI  I G      + D  + + +L+T      G
Sbjct: 62  AAALEMRERI-----------EAALNAEIDAIAGDAGISKEIDRLERQRILLT------G 104

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T H+FC+ ++Q      +I   F +A E++ + L    K+  +  ++    EE   
Sbjct: 105 ADISTFHSFCQRLLQAHIDATDIPPTFRLASEQEIRLL----KRDVMDELLERKYEEASD 160

Query: 191 AF 192
            F
Sbjct: 161 EF 162


>gi|21666114|gb|AAM73563.1| DNA helicase II [Escherichia coli]
          Length = 133

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 39/147 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 1   PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ V T H     +++   
Sbjct: 61  --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175
           ++AN+   F I D E   +L++   K+
Sbjct: 83  MDANLPQDFQILDSEDQLRLLKRLIKA 109


>gi|82546164|ref|YP_410111.1| DNA-dependent helicase II [Shigella boydii Sb227]
 gi|81247575|gb|ABB68283.1| DNA-dependent ATPase I and helicase II [Shigella boydii Sb227]
 gi|320185474|gb|EFW60243.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella flexneri CDC 796-83]
 gi|332089046|gb|EGI94157.1| DNA helicase II [Shigella boydii 3594-74]
          Length = 720

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCLPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|300712678|ref|YP_003738491.1| putative helicase [Halalkalicoccus jeotgali B3]
 gi|299126362|gb|ADJ16700.1| putative helicase [Halalkalicoccus jeotgali B3]
          Length = 1253

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 25/185 (13%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLL 66
           + S T +    T+ +Q LA D  ++  ++A AG+GKT  L +R   +L       P+ ++
Sbjct: 19  QASATKEFELTTEQQQALALD--QNIAITAGAGTGKTTTLTERYRHILTEYPELSPTQIV 76

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T+ A +EM  ++  ++       D + SA        +  K D+  A         
Sbjct: 77  TITFTRDATSEMRDKIRGVV------DDALESASAETYDRWQRAKDDIEDAY-------- 122

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + TIH FC  I++++ +E  +   F   D  ++  LI+   +  LA I LD   
Sbjct: 123 ------IHTIHGFCSRILEEYAVETGVHPDFETLDNGEAVTLIDRTVRDVLAYI-LDEAT 175

Query: 187 ELKKA 191
            L+ A
Sbjct: 176 HLRAA 180


>gi|251787838|ref|YP_003002559.1| DNA-dependent helicase II [Dickeya zeae Ech1591]
 gi|247536459|gb|ACT05080.1| DNA helicase II [Dickeya zeae Ech1591]
          Length = 720

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+     +Q  A    RS   V A AGSGKT +LV R+  LL + N  P +++ +T T 
Sbjct: 5   DLLDSLNDKQRDAVAAARSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+           D++L                             + GG+ 
Sbjct: 65  KAAAEMRHRI-----------DQLLGT---------------------------SQGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T H     +++   L+A +   F I D E   +L++   K+
Sbjct: 87  IGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKA 129


>gi|224437387|ref|ZP_03658358.1| putative recombination protein RecB [Helicobacter cinaedi CCUG
           18818]
 gi|313143850|ref|ZP_07806043.1| helicase [Helicobacter cinaedi CCUG 18818]
 gi|313128881|gb|EFR46498.1| helicase [Helicobacter cinaedi CCUG 18818]
          Length = 991

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 26/148 (17%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           EQ LA        + A+AGSGKT  L  R + LL   A+P  +L LT TK A+ EM  R+
Sbjct: 3   EQFLA--------LKASAGSGKTFSLSLRFIYLLFQGANPHQILTLTFTKKASNEMYRRI 54

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGLK 132
            E      HL   +LS E    +     K+ + K             L  T +++    +
Sbjct: 55  YE------HLKSLLLSFETGTFESNDIYKALLQKGLSHNQISENIAALYHTFMQSSS--R 106

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIA 160
           + TI +F  +++++F     ++S F I 
Sbjct: 107 ITTIDSFFHSVLKKFCWYVGVSSRFEIG 134


>gi|315585943|gb|ADU40324.1| helicase [Helicobacter pylori 35A]
          Length = 949

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 19/165 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII--------- 86
           + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +         
Sbjct: 10  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLE 69

Query: 87  -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                  S  IL  E+ +     P+    S A+ +    L     +++ TI AF ++I++
Sbjct: 70  NEKEKEKSQNILK-ELEEKYRLDPSFVQNS-AQKIYQRFLNAE--IRISTIDAFFQSILR 125

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +F     ++++F +   E +K   ++  +S L+++   NN++L++
Sbjct: 126 KFCWFVGLSANFEV--NEDTKAYQQQLNESFLSAL---NNKQLEE 165


>gi|291615722|ref|YP_003518464.1| UvrD [Pantoea ananatis LMG 20103]
 gi|291150752|gb|ADD75336.1| UvrD [Pantoea ananatis LMG 20103]
          Length = 723

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 7  SELLDGLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 64

Query: 70 HTKAAAAEMSHRVLEII 86
           T  AAAEM HR+ ++I
Sbjct: 65 FTNKAAAEMRHRIEQLI 81


>gi|295401125|ref|ZP_06811099.1| recombination helicase AddA [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976918|gb|EFG52522.1| recombination helicase AddA [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 1238

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 25/137 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ + A   P     LL +T T A+A+EM  R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIQKITAKEDPVDVDRLLVVTFTNASASEMKTRIAE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       I +   K+PN   + +   LL           + TIH+FC  +++++ 
Sbjct: 83  -----------AIERELDKQPNSLHLRRQLSLL-------NRASISTIHSFCLDVVRKYY 124

Query: 149 LEANITSHFAIADEEQS 165
              +I   F IAD+ ++
Sbjct: 125 YLIDIDPVFRIADDTEA 141


>gi|325499218|gb|EGC97077.1| DNA helicase II [Escherichia fergusonii ECD227]
          Length = 738

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 22  SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 79

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 80  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 101

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147


>gi|259046745|ref|ZP_05737146.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens
           ATCC 49175]
 gi|259036641|gb|EEW37896.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens
           ATCC 49175]
          Length = 1231

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 21/138 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD 94
           VSA+AGSGKT +LV+R+L  +      + LL +T T+ AA EM  R+  ++  A    +D
Sbjct: 28  VSASAGSGKTKVLVERILMHIQEGIDINELLVVTFTELAAKEMKERLRSKLEEAIEKSTD 87

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E+L                   A+ L +     P  + + TIH+FC  +++++   A I 
Sbjct: 88  EVLQQRF---------------AKQLQL----IPSAM-ISTIHSFCMKVIRRYFYLAGID 127

Query: 155 SHFAIADEEQSKKLIEEA 172
             F + DE + + L E+ 
Sbjct: 128 PVFTMMDEIEGQLLQEKV 145


>gi|312112099|ref|YP_003990415.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1]
 gi|311217200|gb|ADP75804.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1]
          Length = 1238

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 25/137 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ + A   P     LL +T T A+A+EM  R+ E    
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIQKITAKEDPVDVDRLLVVTFTNASASEMKTRIAE---- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                       I +   K+PN   + +   LL           + TIH+FC  +++++ 
Sbjct: 83  -----------AIERELDKQPNSLHLRRQLSLL-------NRASISTIHSFCLDVVRKYY 124

Query: 149 LEANITSHFAIADEEQS 165
              +I   F IAD+ ++
Sbjct: 125 YLIDIDPVFRIADDTEA 141


>gi|18309003|ref|NP_560937.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens
           str. 13]
 gi|81768348|sp|Q8XPE2|ADDA_CLOPE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|18143678|dbj|BAB79727.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens
           str. 13]
          Length = 1268

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+          
Sbjct: 22  VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I+K   K P+   + +   LL           + T+H+FC E I   F L  
Sbjct: 72  -----GDAISKALEKDPSSKVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++   F I D+ +     E  K+  LA +  D   +  + F +++E       +  ++ I
Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174

Query: 212 ISNRTALKLIFFFFSYLW 229
           I     LK   F  S  W
Sbjct: 175 I-----LKFYNFIMSGPW 187


>gi|289422630|ref|ZP_06424472.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius
           653-L]
 gi|289156981|gb|EFD05604.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius
           653-L]
          Length = 1375

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 25/108 (23%)

Query: 41  GSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           GSGKT +L++R++RL+L   +P     LL +T TKAAA EM  RV               
Sbjct: 27  GSGKTAVLIERIIRLILDPVNPVDIDRLLVVTFTKAAAREMRERV--------------- 71

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
              I K     P+ + + + R LL           + TI +FC ++M+
Sbjct: 72  GLAIEKELALDPDNTRLQRQRMLL-------NKADITTIDSFCNSVMR 112


>gi|162448347|ref|YP_001610714.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So
           ce 56']
 gi|161158929|emb|CAN90234.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So
           ce 56']
          Length = 1254

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 32/169 (18%)

Query: 18  SQTKSEQLLASDPTR---------SAWVSANAGSGKTHILVQRVLRLLL-----ANAHPS 63
           ++ +  + LA +P R         +  V A AG+GKT  LV R++ +L            
Sbjct: 6   TRPRGARELADEPARRRIRDDLRTTLVVEAAAGTGKTTALVSRIVAVLRRAPEEGGGTLD 65

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            ++ +T T+ AA EM  R               L AEI + +   P      +AR  L  
Sbjct: 66  RIVAVTFTEKAAGEMKLR---------------LRAEIERAR-SDPGAGPAERAR--LDE 107

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            L      ++ TIH+FC  +++++P+EA +   F +A  +Q++ L ++A
Sbjct: 108 ALAHLEAARIGTIHSFCADLLREWPVEARVDPLFQVAAADQAEALFDQA 156


>gi|315640911|ref|ZP_07896007.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus
           DSM 15952]
 gi|315483329|gb|EFU73829.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus
           DSM 15952]
          Length = 1226

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ILVQRV+  L    +   LL +T T+AAA EM  R+             
Sbjct: 29  VSASAGSGKTRILVQRVIEKLKNGVNIDELLVVTFTEAAAREMKQRI------------- 75

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E+ K   +  +++ +   R  L T+L      ++ T+H+FC  +++++     +  
Sbjct: 76  --ETELHKTIQQARSEAMIQHFRKQL-TLLPMA---QISTLHSFCLKVIRRYYYLVELDP 129

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDII 212
            F +  +E    LI+E        +M +  +  +  F+++L+  S+D   E +   I+
Sbjct: 130 GFRLLTDETEALLIQE---DVWNELMEEEYDASRPEFFQLLQNFSSDRSDEPVTEMIL 184


>gi|254039025|ref|ZP_04873076.1| DNA helicase II [Escherichia sp. 1_1_43]
 gi|226838716|gb|EEH70744.1| DNA helicase II [Escherichia sp. 1_1_43]
          Length = 738

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 22  SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 79

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 80  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 101

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147


>gi|237702822|ref|ZP_04533303.1| DNA helicase II [Escherichia sp. 3_2_53FAA]
 gi|26110983|gb|AAN83167.1|AE016769_282 DNA helicase II [Escherichia coli CFT073]
 gi|91074912|gb|ABE09793.1| DNA helicase II [Escherichia coli UTI89]
 gi|226902993|gb|EEH89252.1| DNA helicase II [Escherichia sp. 3_2_53FAA]
          Length = 738

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 22  SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 79

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 80  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 101

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G+ V T H     +++   ++AN+   F I D E   +L++   K+
Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147


>gi|226224875|ref|YP_002758982.1| ATP-dependent deoxyribonuclease (subunit A) [Listeria monocytogenes
           Clip81459]
 gi|225877337|emb|CAS06051.1| Putative ATP-dependent deoxyribonuclease (subunit A) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 1235

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +   + P+ + + +   LL           + T+H+FC  I++++  +A+
Sbjct: 81  -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197
           I  +F + +  +S  + +E  ++ L     ++NNE     F+ ++E
Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170


>gi|170769888|ref|ZP_02904341.1| DNA helicase II [Escherichia albertii TW07627]
 gi|170121326|gb|EDS90257.1| DNA helicase II [Escherichia albertii TW07627]
          Length = 720

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNILVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F + D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQLLDSEDQLRLLK 124


>gi|157163878|ref|YP_001466192.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           concisus 13826]
 gi|112801470|gb|EAT98814.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter concisus
           13826]
          Length = 939

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L   + + ++ LT TK AA EM  R++       +   E
Sbjct: 7   LKASAGSGKTFALSVRYIALVLRGENINEIVALTFTKKAANEMKERIIATFLDLQNKKGE 66

Query: 96  I--LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           +  + A++   Q +   + D       L   L++   LK+ T  AF   I+++F     I
Sbjct: 67  LEAVCAQLNISQDEAIKRRD-----ERLGVFLQSE--LKIYTFDAFFSGILKKFSQNLGI 119

Query: 154 TSHFAIADEEQS---KKLIEEAKK-----STLASIML 182
              +++ D  Q    KK ++EA K     S LA +M+
Sbjct: 120 NPDYSVQDSLQDLAWKKFVKEASKDKKLLSELALMMI 156


>gi|85060320|ref|YP_456022.1| DNA-dependent helicase II [Sodalis glossinidius str. 'morsitans']
 gi|84780840|dbj|BAE75617.1| DNA helicase II [Sodalis glossinidius str. 'morsitans']
          Length = 720

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ ++ ++  + E ++A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T
Sbjct: 4   SDLLNSLNDKQREAVVA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSVMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                    HL+ T   + G
Sbjct: 62  FTNKAAAEMRHRI-----------------------------------EHLVGT---SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ + T H     +++    +AN+   F I D E   +L++
Sbjct: 84  GMWIGTFHGLAHRLLRAHHQDANLPQDFQILDSEDQLRLLK 124


>gi|297516694|ref|ZP_06935080.1| DNA-dependent helicase II [Escherichia coli OP50]
          Length = 695

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++        
Sbjct: 2   VLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 55

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           + GG+ V T H     +++   ++AN+ 
Sbjct: 56  --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 83

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 84  QDFQILDSEDQLRLLK 99


>gi|254931621|ref|ZP_05264980.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
 gi|293583174|gb|EFF95206.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
          Length = 1235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +   + P+ + + +   LL           + T+H+FC  I++++  +A+
Sbjct: 81  -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197
           I  +F + +  +S  + +E  ++ L     ++NNE     F+ ++E
Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170


>gi|254825170|ref|ZP_05230171.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
 gi|255519745|ref|ZP_05386982.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL
           J1-175]
 gi|293594413|gb|EFG02174.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
          Length = 1235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +   + P+ + + +   LL           + T+H+FC  I++++  +A+
Sbjct: 81  -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197
           I  +F + +  +S  + +E  ++ L     ++NNE     F+ ++E
Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170


>gi|269798726|ref|YP_003312626.1| recombination helicase AddA [Veillonella parvula DSM 2008]
 gi|269095355|gb|ACZ25346.1| recombination helicase AddA [Veillonella parvula DSM 2008]
          Length = 1288

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 27/182 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++  L    +P     L+ +T TKAAA EMS R+         L
Sbjct: 28  VAAAAGSGKTAVLVERIITRLKDMDNPLSVQELMVVTFTKAAAQEMSARI------GLAL 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +  + S E   +Q +   + ++  + H             + T+H+FC+ +++ +  + +
Sbjct: 82  AKAMESTEDAAMQERLERQLNLLPSAH-------------ISTLHSFCQWVIRSYFYKLD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDI 211
           I     I +E +   L +E     LA ++  + EE     YE+ +  S+D+    L + I
Sbjct: 129 INPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAKI 184

Query: 212 IS 213
           +S
Sbjct: 185 MS 186


>gi|223042879|ref|ZP_03612927.1| recombination helicase AddA [Staphylococcus capitis SK14]
 gi|222443733|gb|EEE49830.1| recombination helicase AddA [Staphylococcus capitis SK14]
          Length = 1218

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 41/198 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII--TA 88
           +   V+A AGSGKT +LV+R++ R+L  N     LL +T T  +A EM HRV + I   +
Sbjct: 24  QDVLVAAAAGSGKTAVLVERIIQRILRDNMDVDRLLVVTFTNLSAREMKHRVDQRIQEAS 83

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            +   +E L  +  KI                           ++ T+H+FC  ++QQ  
Sbjct: 84  LAEPENEHLKNQRVKIHQA------------------------QISTLHSFCLKLIQQ-- 117

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
                  H+ + D + + +   EA+   L    +D   ++ +  Y+IL+    E  E L 
Sbjct: 118 -------HYDVLDIDPNFRTSSEAENVLLLDQTID---DVLERHYDILDSDFIELTEQLS 167

Query: 209 SDIISN--RTALKLIFFF 224
           SD   +  R  +K ++FF
Sbjct: 168 SDRNDDQFRNIIKRLYFF 185


>gi|168210476|ref|ZP_02636101.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711446|gb|EDT23628.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str.
           ATCC 3626]
          Length = 1271

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+          
Sbjct: 22  VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I+K   K P+   + +   LL           + T+H+FC E I   F L  
Sbjct: 72  -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++   F I D+ +     E  K+  LA +  D   +  + F +++E       +  ++ I
Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174

Query: 212 ISNRTALKLIFFFFSYLW 229
           I     LK   F  S  W
Sbjct: 175 I-----LKFYNFIMSGPW 187


>gi|110802763|ref|YP_697370.1| recombination helicase AddA [Clostridium perfringens SM101]
 gi|123342114|sp|Q0SWW4|ADDA_CLOPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|110683264|gb|ABG86634.1| recombination helicase AddA [Clostridium perfringens SM101]
          Length = 1270

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+          
Sbjct: 22  VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I+K   K P+   + +   LL           + T+H+FC E I   F L  
Sbjct: 72  -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++   F I D+ +     E  K+  LA +  D   +  + F +++E       +  ++ I
Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174

Query: 212 ISNRTALKLIFFFFSYLW 229
           I     LK   F  S  W
Sbjct: 175 I-----LKFYNFIMSGPW 187


>gi|313894359|ref|ZP_07827924.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441183|gb|EFR59610.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 1304

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 43/211 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++  L    +P     L+ +T TKAAA EMS R+         L
Sbjct: 28  VAAAAGSGKTAVLVERIITRLKDIDNPLSVQELMVVTFTKAAAQEMSARI------GLAL 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +  + S E   +Q +   + ++  + H             + T+H+FC+ +++ +  + +
Sbjct: 82  AKAMESTEDAAMQERLERQLNLLPSAH-------------ISTLHSFCQWVIRSYFYKLD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           I     I +E +   L +E     LA +++ + EE     Y I E+++        SD  
Sbjct: 129 INPTARIGNEAEMALLQQE----VLADLLIKSYEE---GLYNIYELAD------FFSDDK 175

Query: 213 SNRTALKLIFFFFSYL--------WRRKIIE 235
           S+      I   ++Y         W RK +E
Sbjct: 176 SDAGLTAKIMLLYNYAMSLANPDGWLRKALE 206


>gi|46908500|ref|YP_014889.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b
           F2365]
 gi|81565413|sp|Q71X99|ADDA_LISMF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|46881772|gb|AAT05066.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes serotype
           4b str. F2365]
          Length = 1235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +   + P+ + + +   LL           + T+H+FC  I++++  +A+
Sbjct: 81  -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197
           I  +F + +  +S  + +E  ++ L     ++NNE     F+ ++E
Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170


>gi|46447235|ref|YP_008600.1| ATP-dependent DNA helicase, mutU [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400876|emb|CAF24325.1| probable ATP-dependent DNA helicase, mutU [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 668

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 38/133 (28%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  L+   N  P  +L LT T  AAAEM HR+   +       D  
Sbjct: 27  AGAGSGKTRVLTMRMAYLIRYLNVSPRAILGLTFTNKAAAEMRHRLANFV-------DSK 79

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           L+ ++T                              + T H FC  I++Q   +   T+ 
Sbjct: 80  LAKQVT------------------------------LCTFHGFCMQILRQDIAKLGYTTK 109

Query: 157 FAIADEEQSKKLI 169
           F++ DE+  ++LI
Sbjct: 110 FSLYDEQDVQRLI 122


>gi|47092374|ref|ZP_00230164.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|47019151|gb|EAL09894.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b
           H7858]
          Length = 1106

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +   + P+ + + +   LL           + T+H+FC  I++++  +A+
Sbjct: 81  -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197
           I  +F + +  +S  + +E  ++ L     ++NNE     F+ ++E
Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170


>gi|282849710|ref|ZP_06259094.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745]
 gi|282580647|gb|EFB86046.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745]
          Length = 1251

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 29/183 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91
           V+A AGSGKT +LV+R++  L    +P     L+ +T TKAAA EMS R+ L +  A   
Sbjct: 28  VAAAAGSGKTAVLVERIITRLKDMDNPLSVQELMVVTFTKAAAQEMSARIGLALAKAMES 87

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D  L A + +     P+                      + T+H+FC+ +++ +  + 
Sbjct: 88  TDDAALQARLERQLNLLPSA--------------------HISTLHSFCQWVIRSYFYKL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISD 210
           +I     I +E +   L +E     LA ++  + EE     YE+ +  S+D+    L + 
Sbjct: 128 DINPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAK 183

Query: 211 IIS 213
           I+S
Sbjct: 184 IMS 186


>gi|254853388|ref|ZP_05242736.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300763922|ref|ZP_07073918.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL
           N1-017]
 gi|258606756|gb|EEW19364.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300515263|gb|EFK42314.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL
           N1-017]
          Length = 1234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+          
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +   + P+ + + +   LL           + T+H+FC  I++++  +A+
Sbjct: 81  -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197
           I  +F + +  +S  + +E  ++ L     ++NNE     F+ ++E
Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170


>gi|329894920|ref|ZP_08270719.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088]
 gi|328922649|gb|EGG29984.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088]
          Length = 1097

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 4/128 (3%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DPT S  V A AGSGKT +LVQR+L LL   +HP  ++ +T T+ AAAEM  R+ E+ 
Sbjct: 10  AIDPTASCCVVAPAGSGKTSLLVQRMLALLARVSHPEQIVAITFTRKAAAEMRARMAEVF 69

Query: 87  T-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
             A      E+   E   ++  K   S+ S+    L   LE    L+  TI +FC ++++
Sbjct: 70  ELAQVKQLSEVPEYERVSLELAKHALSNASERGWSLPEQLER---LQFMTIDSFCASLVR 126

Query: 146 QFPLEANI 153
           Q PL + +
Sbjct: 127 QMPLASRM 134


>gi|168217733|ref|ZP_02643358.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC
           8239]
 gi|182380203|gb|EDT77682.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC
           8239]
          Length = 1271

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+          
Sbjct: 22  VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I+K   K P+   + +   LL           + T+H+FC E I   F L  
Sbjct: 72  -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++   F I D+ +     E  K+  LA +  D   +  + F +++E       +  ++ I
Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174

Query: 212 ISNRTALKLIFFFFSYLW 229
           I     LK   F  S  W
Sbjct: 175 I-----LKFYNFIMSGPW 187


>gi|313115007|ref|ZP_07800500.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622698|gb|EFQ06160.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 1240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 25/167 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T +++    D   +  VSA AGSGKT +L +R +RL+    HP     LL +T T AAAA
Sbjct: 7   TPAQRAAIEDRGGALLVSAAAGSGKTAVLTERAVRLITDPDHPVDADKLLIVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+                  + ++  ++P+ + + + R LL      P    + TI
Sbjct: 67  ELRARI---------------GQALLRLSQQQPHNTSLRRQRMLL---QRAP----ICTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            AFC  ++ +     +I   FA AD    + L   A   TL +   D
Sbjct: 105 DAFCLDLLHKHFQALDIPPDFAPADPGSVEVLRASALAETLENAYRD 151


>gi|322417957|ref|YP_004197180.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M18]
 gi|320124344|gb|ADW11904.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M18]
          Length = 1116

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    LRL+L      S +L +T T+AA  E+  RV + +   +    
Sbjct: 17  IEASAGTGKTFTIAGVYLRLVLEEELDVSRILVVTFTEAATKELKERVRKKLKE-AESGF 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           E  ++E   I G   + SD  KAR LL + + +     + TIH FC+ ++Q  P E+
Sbjct: 76  EAGASEDFLIAGLLQSSSDHHKARRLLASAVRSFDEAAIFTIHGFCQRMLQDNPFES 132


>gi|88811691|ref|ZP_01126945.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus
           mobilis Nb-231]
 gi|88791082|gb|EAR22195.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus
           mobilis Nb-231]
          Length = 1117

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 13/152 (8%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           SE ID   + +   L A D T    V A AGSGKT ++  R++  L     P  +  +T 
Sbjct: 2   SELID--HRQRLRALTAIDST--LLVEAGAGSGKTALMAGRIVYSLAQGIEPGRIAAITF 57

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK-SDMSKARHLLITILETPG 129
           T+ AA ++      +I     L   +      ++Q   P   SD  + R  L T  E   
Sbjct: 58  TELAAGQL------LIRIRGFLERALRGETPVELQAAFPKGLSDAERIR--LTTARERLA 109

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161
            L   TIH FC+ +++ +P+EA+I    AI D
Sbjct: 110 ELTATTIHGFCQQLIRPYPVEADIDPGAAIMD 141


>gi|288553536|ref|YP_003425471.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4]
 gi|288544696|gb|ADC48579.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4]
          Length = 1135

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 35/196 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PST--------LLCLTHTKAAAAEMSHRVLEII 86
           ++A AGSGKT +L +R++ LL    H PS+        +  +T T+ AA EM  RV + I
Sbjct: 20  IAAGAGSGKTRVLTERIMYLLEKAFHEPSSSIAATIEEVAAITFTEKAAREMKDRVRKRI 79

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           +       E+L+    +    +  K  + +A               + T H+FC+ ++ Q
Sbjct: 80  S-----EKEVLAQTEAEAAFWREQKELVERAH--------------ISTFHSFCQQLLGQ 120

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDE 202
           + + A +     I DE ++K+L  +  K  L  +    +    K F+  +     IS  E
Sbjct: 121 YAMAAKLPPKIRIIDEVEAKQLKRDVLKKHLQDVEFTAS---AKEFFSYMSKDQFISTME 177

Query: 203 DIETLISDIISNRTAL 218
           DI   IS+++    A+
Sbjct: 178 DIHASISELVIGEDAV 193


>gi|237738470|ref|ZP_04568951.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC
           9817]
 gi|229420350|gb|EEO35397.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC
           9817]
          Length = 1017

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 26/198 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AG+GKT+ L    +  L+       +L +T TK A AE+  R+L+ +        E
Sbjct: 7   LKASAGTGKTYRLSLEYIASLMVGIDFKDILVMTFTKKATAEIKERILKFLK-------E 59

Query: 96  ILSAEITKIQGKKPNKS--------DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           I  +E  +++ +K  ++        ++SK + +   I+E    LK+ TI +F   I ++ 
Sbjct: 60  ICESEEKRVEIEKNLQNIYGDVFSFEISKVKKIYKNIVENKDKLKIYTIDSFTNTIFKKA 119

Query: 148 PLEANITSHFAIADEEQSKK-LIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
                    + I DEE+++K LI   +K      + +N E+    F   LE ++++D++ 
Sbjct: 120 IAPYLKIYSYEIVDEEENRKILIRTFEK------LFENREDF-NLFKSFLEDNSEKDMDR 172

Query: 207 ---LISDIISNRTALKLI 221
              LI +II+ R  + L+
Sbjct: 173 YVELIRNIINQRWKMILL 190


>gi|189502292|ref|YP_001958009.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497733|gb|ACE06280.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 913

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%)

Query: 40  AGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
           AGSGKT++LV+  L+L L A  +   +L +T T  A  EM  R+L  +   +   + +L+
Sbjct: 11  AGSGKTYVLVKAYLQLALRAPLYFQRILAVTFTNRATQEMKQRILNSLHDIAQGKESLLT 70

Query: 99  AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA 158
            E+ +  G   +K    +A+ +L  +L       V TI +F ++I++ F  E  I   F 
Sbjct: 71  QELNQANGWD-SKELQKRAQAVLSKVLHNYDHFSVGTIDSFLQSIVRNFSKELGIQHGFT 129

Query: 159 IADEEQS 165
           I  ++++
Sbjct: 130 IEMDQET 136


>gi|313904430|ref|ZP_07837807.1| recombination helicase AddA [Eubacterium cellulosolvens 6]
 gi|313470766|gb|EFR66091.1| recombination helicase AddA [Eubacterium cellulosolvens 6]
          Length = 1236

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 43/206 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T  ++ + S       VSA AGSGKT +LV+R+++L++    P     LL +T T+AAA 
Sbjct: 6   TDEQERVISQRNSDLLVSAAAGSGKTAVLVERIMQLVMDPVSPMDIDQLLVVTFTRAAAG 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+                A+   +  + P    + +   LL   L       + TI
Sbjct: 66  EMKERI---------------GAKFAALLEEDPENDHLQQQGVLLHHAL-------ITTI 103

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYE 194
             FC  ++Q +     +   + IA         EE + S L   +LD+   EE  +A  E
Sbjct: 104 DGFCTHVIQNYFQRIGLDPGYRIA---------EEGELSLLRGQVLDDLLEEEYAEASPE 154

Query: 195 ILEISN-------DEDIETLISDIIS 213
            L ++        D  +E +I DI S
Sbjct: 155 FLRLAQAYAPGKTDRALEEMILDIYS 180


>gi|188586470|ref|YP_001918015.1| recombination helicase AddA [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|251764535|sp|B2A610|ADDA_NATTJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|179351157|gb|ACB85427.1| recombination helicase AddA [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 1282

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 27/131 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           VSA AG+GKT +LVQR++  L+ + H     + LL +T T+ AA EM  R+         
Sbjct: 29  VSAGAGAGKTAVLVQRIISKLI-DPHDDLTVNGLLVVTFTEKAANEMRDRI--------- 78

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                 + E+ K   + P    + K  +LL           + T+H+FC  I++ +    
Sbjct: 79  ------ARELKKALSQDPENDHLKKQLYLL-------NKANISTLHSFCLEILRHYFYYL 125

Query: 152 NITSHFAIADE 162
           +I   F++A E
Sbjct: 126 DIDPAFSVASE 136


>gi|237807125|ref|YP_002891565.1| DNA helicase II [Tolumonas auensis DSM 9187]
 gi|237499386|gb|ACQ91979.1| DNA helicase II [Tolumonas auensis DSM 9187]
          Length = 729

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 39/176 (22%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P ++  V A AGSGKT +LV R+  LL +    P ++L +T T  AAAEM  R+  ++  
Sbjct: 21  PLQNMLVLAGAGSGKTRVLVHRIAWLLQIEQVSPHSILAVTFTNKAAAEMRGRIERLL-- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                  + +   R          GG+ + T H     +++  P
Sbjct: 79  ----------------------GNSLGFGR----------GGMWIGTFHGLAHRLLRAHP 106

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           L+AN+   F I D +   +L+    K  L ++ LD  + + +A    +    DE +
Sbjct: 107 LDANLPEDFQIIDSDDQLRLL----KRILRNLNLDEKQWVPRAVAGYINSKKDEGL 158


>gi|124005926|ref|ZP_01690764.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC
           23134]
 gi|123988609|gb|EAY28250.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC
           23134]
          Length = 949

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 17/165 (10%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92
           S++AGSGKT+ L +  L+L L    P     +L +T T  AA EM  R++  +  ++   
Sbjct: 7   SSSAGSGKTYTLTREYLKLALQGDQPHYFKYILAITFTNDAANEMKARIVNALQGFAQPD 66

Query: 93  ---------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                    SD++L   I +  G  P K   ++A+ + + I+       V TI  F   I
Sbjct: 67  TLDDKARKGSDQLLFG-IAEELGVAPEKL-RTRAQKVFVKIIYNYSDFAVSTIDRFVNKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
              F  E +I  ++ +  +  + KL+E A    LA +  +  E L
Sbjct: 125 TTAFTQELDIPYNYDV--DLDTDKLLETAIDRVLAKVGRETKENL 167


>gi|33863357|ref|NP_894917.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33640806|emb|CAE21261.1| similar to UvrD/REP helicase [Prochlorococcus marinus str. MIT
           9313]
          Length = 1274

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 16/148 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-------LEIIT 87
           + A+AG+GKT  L   VLRLL    H  S LL +T T+AAAAE+  R+       LE + 
Sbjct: 26  LEASAGTGKTFALAHLVLRLLTEGGHQISELLVVTFTEAAAAELRSRIGQRLEHALEGLE 85

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL----LITILETPGGLKVQTIHAFCEAI 143
           A  H + +     + K Q  + N  D+S+ RH     L+  LE+     + TIH FC   
Sbjct: 86  ALDHGATDQPPDLVLK-QWLQCNGHDLSQ-RHQWISSLLVALESLDLADITTIHGFCRRT 143

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171
           +++  LE+       + D  Q  +L++E
Sbjct: 144 LRRQALESGAVMDPRLDDSGQ--QLVQE 169


>gi|297543796|ref|YP_003676098.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841571|gb|ADH60087.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 1230

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 25/149 (16%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T  +QL  +    +  V+A AGSGKT +LV+R++RL+    +P     LL +T T AAA+
Sbjct: 6   THEQQLAINTRGNNLLVAAGAGSGKTAVLVERIIRLITDKENPVDIDRLLVVTFTNAAAS 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ +              A I+K+  + P    +S    LL           + TI
Sbjct: 66  EMRERIAD--------------ALISKLD-QNPEDRRLSNQLTLL-------NKATITTI 103

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQS 165
           H+FC  +++      ++  +F I D+ ++
Sbjct: 104 HSFCLEVVRNNFFLVDLDPNFRIGDDTET 132


>gi|323440877|gb|EGA98585.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O11]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 49/211 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++   N+ PS +LC+T T  A
Sbjct: 7   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 67  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 88

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 89  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLNYYYATSNLMATNMQIQKVID 148

Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215
                 A  E LE    ++ +T+I +I   R
Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 179


>gi|305665916|ref|YP_003862203.1| ATP-dependent helicase [Maribacter sp. HTCC2170]
 gi|88710691|gb|EAR02923.1| ATP-dependent helicase [Maribacter sp. HTCC2170]
          Length = 1037

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 6/129 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           +A+AGSGKTH L +  L+++L++ +    +L +T T  A  EM  R+L  +  +S+ +DE
Sbjct: 10  NASAGSGKTHTLTKEYLKIVLSSPNSYGQILAITFTNKAVNEMKERILSSLFEFSN-TDE 68

Query: 96  ILSAEI--TKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           + +A +  + +  +   + D    KA+  L  IL   G   + TI  F   I++ F  + 
Sbjct: 69  VGNASVLFSDLMSELDLEVDALRKKAKRTLKDILHNYGFFDISTIDKFTHRIIRTFAKDL 128

Query: 152 NITSHFAIA 160
            I  +F + 
Sbjct: 129 KIAQNFEVV 137


>gi|298694207|gb|ADI97429.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|303257893|ref|ZP_07343902.1| DNA helicase II [Burkholderiales bacterium 1_1_47]
 gi|302859236|gb|EFL82318.1| DNA helicase II [Burkholderiales bacterium 1_1_47]
          Length = 787

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 40/139 (28%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           Q + ++P +SA + A AGSGKT +L  R+  LL  N AHPS +L +T T  AA EM  R+
Sbjct: 20  QAVTAEP-KSALILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKAAKEMLARL 78

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +I                                         P  + V T H  C  
Sbjct: 79  QNMIPI--------------------------------------NPRAMWVGTFHGLCNR 100

Query: 143 IMQQFPLEANITSHFAIAD 161
           +++    EA + S FAI D
Sbjct: 101 LLRLHHQEAGLPSTFAILD 119


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 49/211 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++   N+ PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 61  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142

Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215
                 A  E LE    ++ +T+I +I   R
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173


>gi|153855193|ref|ZP_01996377.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
 gi|149752362|gb|EDM62293.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
          Length = 1221

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 33/185 (17%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIIT 87
            R+  VSA AGSGKT +LV+R++ +L  +  P     LL +T T+AAA+EM  R+     
Sbjct: 17  NRNILVSAAAGSGKTAVLVERIITMLTKDDPPMDVDRLLIVTFTEAAASEMKERI----- 71

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                        I K   + P+   + +   L+          ++ TIH+FC ++++  
Sbjct: 72  ----------RLAIEKKLMEYPDNEHLKQQATLI-------HNAQITTIHSFCLSVIRDH 114

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDED 203
               +I   F I +E + K L    +   L  ++ +  +E  K F +         ND+ 
Sbjct: 115 FHAIDIDPGFRIGEEGELKLL----RHDVLEDMLEEKYQEGSKRFLDFTAAYSTGRNDKK 170

Query: 204 IETLI 208
           IE LI
Sbjct: 171 IEDLI 175


>gi|116334819|ref|YP_796346.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           brevis ATCC 367]
 gi|122268502|sp|Q03NA7|ADDA_LACBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116100166|gb|ABJ65315.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus
           brevis ATCC 367]
          Length = 1262

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 18/151 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LVQRV+  L        +L +T TKAAAAEM  R+             
Sbjct: 24  VSASAGSGKTRVLVQRVIERLKTGVGIDQILIVTFTKAAAAEMRERI-----------QT 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L  E+   QG      D ++ +  L  + + P    + T+ AFC  ++Q++    ++  
Sbjct: 73  ALRQELAVSQG------DSAQQQFYLRQLNQLPVA-DISTLDAFCLRLLQRYYYVIDLDP 125

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F +  +E    L+ +   + L   +  N++
Sbjct: 126 VFRLLADETENGLLRDEVWADLREDLYANDD 156


>gi|168214037|ref|ZP_02639662.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str.
           F4969]
 gi|170714486|gb|EDT26668.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str.
           F4969]
          Length = 1271

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 31/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+          
Sbjct: 22  VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I+K   K P+   + +   LL           + T+H+FC E I   F L  
Sbjct: 72  -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++   F I D+ +     E  K+  LA +  D   +  + F +++E
Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVE 160


>gi|87161998|ref|YP_493570.1| exonuclease RexA [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509167|ref|YP_001574826.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|262049318|ref|ZP_06022192.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30]
 gi|284023894|ref|ZP_06378292.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 132]
 gi|294847955|ref|ZP_06788702.1| recombination helicase AddA [Staphylococcus aureus A9754]
 gi|123486587|sp|Q2FIA8|ADDA_STAA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764539|sp|A8Z073|ADDA_STAAT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|87127972|gb|ABD22486.1| exonuclease RexA [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160367976|gb|ABX28947.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|259162550|gb|EEW47118.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30]
 gi|294824755|gb|EFG41177.1| recombination helicase AddA [Staphylococcus aureus A9754]
 gi|315197320|gb|EFU27658.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320143273|gb|EFW35063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|57651659|ref|YP_185840.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL]
 gi|88194662|ref|YP_499458.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221050|ref|YP_001331872.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman]
 gi|221142113|ref|ZP_03566606.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452081|ref|ZP_05700097.1| exonuclease RexA [Staphylococcus aureus A5948]
 gi|262052141|ref|ZP_06024349.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3]
 gi|282922247|ref|ZP_06329942.1| recombination helicase AddA [Staphylococcus aureus A9765]
 gi|304381479|ref|ZP_07364129.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|81694859|sp|Q5HHB7|ADDA_STAAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|122539894|sp|Q2FZT5|ADDA_STAA8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764538|sp|A6QFH8|ADDA_STAAE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|57285845|gb|AAW37939.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL]
 gi|87202220|gb|ABD30030.1| ATP-dependent nuclease subunit A, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150373850|dbj|BAF67110.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman]
 gi|257860296|gb|EEV83128.1| exonuclease RexA [Staphylococcus aureus A5948]
 gi|259159960|gb|EEW44996.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3]
 gi|269940469|emb|CBI48846.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593537|gb|EFB98531.1| recombination helicase AddA [Staphylococcus aureus A9765]
 gi|302750795|gb|ADL64972.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339842|gb|EFM05786.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|329313635|gb|AEB88048.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329726247|gb|EGG62717.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
 gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
           13]
          Length = 870

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 49/211 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++   N+ PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 61  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142

Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215
                 A  E LE    ++ +T+I +I   R
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173


>gi|15923957|ref|NP_371491.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926556|ref|NP_374089.1| hypothetical protein SA0828 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267401|ref|YP_001246344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393454|ref|YP_001316129.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156979293|ref|YP_001441552.1| hypothetical protein SAHV_0962 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316128|ref|ZP_04839341.1| hypothetical protein SauraC_08287 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005757|ref|ZP_05144358.2| hypothetical protein SauraM_04790 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795298|ref|ZP_05644277.1| recombination helicase AddA [Staphylococcus aureus A9781]
 gi|258406947|ref|ZP_05680100.1| recombination helicase AddA [Staphylococcus aureus A9763]
 gi|258421915|ref|ZP_05684836.1| recombination helicase AddA [Staphylococcus aureus A9719]
 gi|258435312|ref|ZP_05689051.1| recombination helicase AddA [Staphylococcus aureus A9299]
 gi|258441524|ref|ZP_05690884.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115]
 gi|258447223|ref|ZP_05695372.1| recombination helicase AddA [Staphylococcus aureus A6300]
 gi|258449983|ref|ZP_05698081.1| recombination helicase AddA [Staphylococcus aureus A6224]
 gi|269202582|ref|YP_003281851.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98]
 gi|282893994|ref|ZP_06302225.1| recombination helicase AddA [Staphylococcus aureus A8117]
 gi|282927190|ref|ZP_06334812.1| recombination helicase AddA [Staphylococcus aureus A10102]
 gi|295405773|ref|ZP_06815582.1| recombination helicase AddA [Staphylococcus aureus A8819]
 gi|296276179|ref|ZP_06858686.1| exonuclease RexA [Staphylococcus aureus subsp. aureus MR1]
 gi|297245364|ref|ZP_06929235.1| recombination helicase AddA [Staphylococcus aureus A8796]
 gi|81705953|sp|Q7A6H4|ADDA_STAAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|81781869|sp|Q99VC3|ADDA_STAAM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764537|sp|A6U074|ADDA_STAA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764554|sp|A5IRE5|ADDA_STAA9 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764555|sp|A7X0I2|ADDA_STAA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|13700771|dbj|BAB42067.1| SA0828 [Staphylococcus aureus subsp. aureus N315]
 gi|14246736|dbj|BAB57129.1| similar to ATP-dependent nuclease subunit A [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740470|gb|ABQ48768.1| DNA helicase/exodeoxyribonuclease V, subunit A [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149945906|gb|ABR51842.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156721428|dbj|BAF77845.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789270|gb|EEV27610.1| recombination helicase AddA [Staphylococcus aureus A9781]
 gi|257841486|gb|EEV65927.1| recombination helicase AddA [Staphylococcus aureus A9763]
 gi|257842248|gb|EEV66676.1| recombination helicase AddA [Staphylococcus aureus A9719]
 gi|257848973|gb|EEV72956.1| recombination helicase AddA [Staphylococcus aureus A9299]
 gi|257852314|gb|EEV76240.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115]
 gi|257853971|gb|EEV76925.1| recombination helicase AddA [Staphylococcus aureus A6300]
 gi|257856903|gb|EEV79806.1| recombination helicase AddA [Staphylococcus aureus A6224]
 gi|262074872|gb|ACY10845.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98]
 gi|282590879|gb|EFB95954.1| recombination helicase AddA [Staphylococcus aureus A10102]
 gi|282763480|gb|EFC03609.1| recombination helicase AddA [Staphylococcus aureus A8117]
 gi|285816646|gb|ADC37133.1| ATP-dependent nuclease, subunit A [Staphylococcus aureus 04-02981]
 gi|294969208|gb|EFG45228.1| recombination helicase AddA [Staphylococcus aureus A8819]
 gi|297177667|gb|EFH36917.1| recombination helicase AddA [Staphylococcus aureus A8796]
 gi|312829364|emb|CBX34206.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315130452|gb|EFT86439.1| hypothetical protein CGSSa03_03488 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329728233|gb|EGG64672.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|148212|gb|AAA67609.1| DNA helicase II [Escherichia coli str. K-12 substr. MG1655]
          Length = 720

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ +++                                        + G
Sbjct: 62  FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     ++    ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHXLAHRLLXAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|323443832|gb|EGB01444.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O46]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|311029443|ref|ZP_07707533.1| ATP-dependent nuclease, subunit A [Bacillus sp. m3-13]
          Length = 1255

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 30/185 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           R   V+A AGSGKT +LV+R++ +++  +     LL +T T A+AAEM HR+ E      
Sbjct: 27  RDILVAAAAGSGKTAVLVERMIHKIVEEHVDVDRLLVVTFTNASAAEMRHRIGE------ 80

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                     + K   KKP    + +   LL           + TIH+FC  +++++   
Sbjct: 81  ---------ALEKQLEKKPASLHLRRQLSLL-------NRASISTIHSFCLEVVRKYYYL 124

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDED---IET 206
            +I   F IAD  + + + EE  +        +  +E    F+E+++  +ND     ++ 
Sbjct: 125 IDIDPSFRIADTTEIQLMQEEVLEGVFEE---EYGKEDNDLFFELVDRYTNDRSDGALQN 181

Query: 207 LISDI 211
           L+ D+
Sbjct: 182 LVLDL 186


>gi|302332580|gb|ADL22773.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|294792591|ref|ZP_06757738.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27]
 gi|294456490|gb|EFG24853.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27]
          Length = 1251

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 27/182 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++  L    +P     L+ +T TKAAA EMS R+   +      
Sbjct: 28  VAAAAGSGKTAVLVERIITRLKDMYNPLSVQELMVVTFTKAAAQEMSARIGLALAKAMES 87

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +D++       +Q +   + ++  + H             + T+H+FC+ +++ +  + +
Sbjct: 88  TDDV------ALQTRLERQLNLLPSAH-------------ISTLHSFCQWVIRSYFYKLD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDI 211
           I     I +E +   L +E     LA ++  + EE     YE+ +  S+D+    L + I
Sbjct: 129 INPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAKI 184

Query: 212 IS 213
           +S
Sbjct: 185 MS 186


>gi|283770033|ref|ZP_06342925.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus
           subsp. aureus H19]
 gi|283460180|gb|EFC07270.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus
           subsp. aureus H19]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|282910543|ref|ZP_06318347.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282325935|gb|EFB56243.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           WBG10049]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|258455496|ref|ZP_05703455.1| recombination helicase AddA [Staphylococcus aureus A5937]
 gi|257862314|gb|EEV85083.1| recombination helicase AddA [Staphylococcus aureus A5937]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|146309527|ref|YP_001189992.1| DNA-dependent helicase II [Pseudomonas mendocina ymp]
 gi|145577728|gb|ABP87260.1| ATP-dependent DNA helicase UvrD [Pseudomonas mendocina ymp]
          Length = 727

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 49/163 (30%)

Query: 19  QTKSEQLLAS----------DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           Q   E LLAS           P     V A AGSGKT +LV R+  L+ A  A P ++L 
Sbjct: 2   QNDPELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAMGASPHSILS 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                         
Sbjct: 62  VTFTNKAAAEMRHRIEQMLG--------------------------------------HN 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           P G+ V T H     +++    EA +T +F I D +  ++LI+
Sbjct: 84  PAGMWVGTFHGLAHRLLRAHWQEAALTENFQILDSDDQQRLIK 126


>gi|82750584|ref|YP_416325.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122]
 gi|123548876|sp|Q2YWW4|ADDA_STAAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|82656115|emb|CAI80524.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|49485743|ref|YP_042964.1| hypothetical protein SAS0837 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208398|ref|ZP_06924828.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|81649660|sp|Q6GAV9|ADDA_STAAS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|49244186|emb|CAG42612.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887137|gb|EFH26040.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|293374973|ref|ZP_06621268.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909]
 gi|292646383|gb|EFF64398.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909]
          Length = 1198

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 23/128 (17%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           +SA AGSGKT +LV+R++ +++    +   LL +T T+AAAAEM  R+       S + D
Sbjct: 30  ISAGAGSGKTAVLVERMIQKIIQEKLNIDELLVMTFTEAAAAEMKQRM------RSRIQD 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E+          K+P+        HL +  L       + T HAFC  +++++     + 
Sbjct: 84  EL---------EKQPDNE------HLKVQ-LNKISQSHISTFHAFCNKLIKRYYYLLELD 127

Query: 155 SHFAIADE 162
             F IAD+
Sbjct: 128 PVFKIADD 135


>gi|21282578|ref|NP_645666.1| hypothetical protein MW0849 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300912474|ref|ZP_07129917.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|81762665|sp|Q8NXE9|ADDA_STAAW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|21204016|dbj|BAB94714.1| MW0849 [Staphylococcus aureus subsp. aureus MW2]
 gi|300886720|gb|EFK81922.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
 gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
          Length = 870

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 92/211 (43%), Gaps = 49/211 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++   N+ PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV+ I+   +                                        + ++
Sbjct: 61  CKEMSDRVMRIVGGEAK--------------------------------------DITIR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREIISKLSYYYATSNLMATNMQIQKVID 142

Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215
                 A  E LE    ++ +T+I +I   R
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173


>gi|329733963|gb|EGG70285.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|282905282|ref|ZP_06313139.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282331689|gb|EFB61201.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|257425017|ref|ZP_05601444.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427682|ref|ZP_05604081.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430317|ref|ZP_05606700.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433014|ref|ZP_05609374.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410]
 gi|257435918|ref|ZP_05611966.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           M876]
 gi|282913739|ref|ZP_06321528.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
           subsp. aureus M899]
 gi|282923655|ref|ZP_06331335.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           C101]
 gi|293500781|ref|ZP_06666632.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509732|ref|ZP_06668443.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           M809]
 gi|293524319|ref|ZP_06671006.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
           subsp. aureus M1015]
 gi|257272587|gb|EEV04710.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275875|gb|EEV07348.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279094|gb|EEV09705.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282429|gb|EEV12564.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410]
 gi|257285109|gb|EEV15228.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314523|gb|EFB44913.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           C101]
 gi|282322771|gb|EFB53093.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
           subsp. aureus M899]
 gi|290921282|gb|EFD98343.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095786|gb|EFE26047.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467829|gb|EFF10344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           M809]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|253732675|ref|ZP_04866840.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253729286|gb|EES98015.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|253731575|ref|ZP_04865740.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724818|gb|EES93547.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|282903504|ref|ZP_06311395.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus C160]
 gi|282908262|ref|ZP_06316093.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282918665|ref|ZP_06326402.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           C427]
 gi|283957705|ref|ZP_06375158.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295427450|ref|ZP_06820085.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|282317799|gb|EFB48171.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           C427]
 gi|282327927|gb|EFB58209.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282596459|gb|EFC01420.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus C160]
 gi|283791156|gb|EFC29971.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295128838|gb|EFG58469.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|312438670|gb|ADQ77741.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315194499|gb|EFU24891.1| hypothetical protein CGSSa00_12270 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|297590190|ref|ZP_06948829.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297576489|gb|EFH95204.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus MN8]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|49483127|ref|YP_040351.1| hypothetical protein SAR0929 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|81651446|sp|Q6GIC1|ADDA_STAAR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|49241256|emb|CAG39935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|330431031|gb|AEC16090.1| exonuclease V beta subunit [Gallibacterium anatis UMN179]
          Length = 1199

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 33/155 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +V   LRLLL    N  P+ L     L +T T+ A  E+  R+ E   
Sbjct: 18  IEASAGTGKTYTMVTLYLRLLLQAGENNFPTPLDIEQILVVTFTRDATRELRQRIRERTQ 77

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQ------------ 134
           +W  L +            +  +KS++     L L+  LE    L +Q            
Sbjct: 78  SWLKLLESY---------QQNRDKSEIKDNELLALLPYLEDHLALAIQRLSFACEYIDKA 128

Query: 135 ---TIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
              TIH FC+ I++Q+  ++ +   F ++++ Q +
Sbjct: 129 AIFTIHGFCQRILRQYAFDSGLGFKFELSEQNQEQ 163


>gi|331000444|ref|ZP_08324119.1| putative DNA helicase II [Parasutterella excrementihominis YIT
           11859]
 gi|329571776|gb|EGG53456.1| putative DNA helicase II [Parasutterella excrementihominis YIT
           11859]
          Length = 781

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 40/139 (28%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           Q + ++P +SA + A AGSGKT +L  R+  LL  N AHPS +L +T T  AA EM  R+
Sbjct: 14  QAVTAEP-KSALILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKAAKEMLARL 72

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +I                                         P  + V T H  C  
Sbjct: 73  QNMIPI--------------------------------------NPRAMWVGTFHGLCNR 94

Query: 143 IMQQFPLEANITSHFAIAD 161
           +++    EA + S FAI D
Sbjct: 95  LLRLHHQEAGLPSTFAILD 113


>gi|320141216|gb|EFW33063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|302524115|ref|ZP_07276457.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4]
 gi|302433010|gb|EFL04826.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4]
          Length = 804

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  LL     HP  ++ +T T  AAAEM  RV  ++        
Sbjct: 44  VVAGAGSGKTRVLTRRIAYLLAERGVHPGEIMAITFTNKAAAEMRERVAALV-------- 95

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      GK+ N                    + V T H+ C  I+++     +++
Sbjct: 96  -----------GKRAN-------------------AMWVSTFHSMCVRILRREAKTLDMS 125

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D + +K+LI
Sbjct: 126 SSFSIYDSDDTKRLI 140


>gi|153813842|ref|ZP_01966510.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
 gi|145848238|gb|EDK25156.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
          Length = 1197

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK +Q +     R+  VSA AGSGKT +LV+R+++ +     P     LL +T T+A
Sbjct: 3   VKWTKQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ E                I K   + P    + +   L+ +         +
Sbjct: 63  AAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSA-------PI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC +++++     ++   F I ++ + K L ++     L        EE      
Sbjct: 101 TTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFTE 160

Query: 194 EILEISNDEDIETLI 208
                 ND  IE +I
Sbjct: 161 RFGTGKNDRKIEGII 175


>gi|311744700|ref|ZP_07718497.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272]
 gi|311312009|gb|EFQ81929.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272]
          Length = 774

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 40/160 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           SET+ L     +++   S P     V A AGSGKT +L +R+  L+ A  AHP ++L +T
Sbjct: 24  SETL-LEDLNDAQREAVSHPGGPLLVVAGAGSGKTRVLTRRIAWLMAARGAHPGSILAIT 82

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV E++   S                                       
Sbjct: 83  FTNKAAAEMRERVAEMVGGASR-------------------------------------- 104

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + V T H+ C  I+++       TS F + D   S++L+
Sbjct: 105 AMWVSTFHSACVRILRREAATLGYTSSFTVYDAADSRRLM 144


>gi|261840231|gb|ACX99996.1| ATP-dependent nuclease [Helicobacter pylori 52]
          Length = 949

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +
Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 60


>gi|313622690|gb|EFR93052.1| ATP-dependent nuclease subunit A [Listeria innocua FSL J1-023]
          Length = 1235

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 30/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+    N +   LL +T T A+AAEM +R+         L
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLINETENLNVDELLIVTFTNASAAEMKYRI------GKSL 84

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            + ++         + P  + + K   LL           + T+H+FC  I+++   EA+
Sbjct: 85  EEALM---------QNPESAHLKKQVALL-------NYASISTLHSFCLEIIRKHYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197
           I  +F + +  +S  + +E  +  L     ++NNE    AF+ ++E
Sbjct: 129 IDPNFRLIEPIESGMIRDEVLEDLLEKEYSIENNE----AFFHLVE 170


>gi|313683463|ref|YP_004061201.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313156323|gb|ADR35001.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 900

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 12/136 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHLSD 94
           A+AGSGKT  LV R L LL    +PS+++ LT T  AA EM  R+   LE +   S LS 
Sbjct: 11  ASAGSGKTFNLVVRYLSLLFMGENPSSIIALTFTNKAANEMLERIILTLEELPKRSELS- 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                +I ++ G    K  + +   +L   L +   +++ TI  F   I+++F L A + 
Sbjct: 70  -----QIARLSGIDEAKI-LEERPKVLARFLRSD--IQISTIDKFFGRILRKFALNAGLM 121

Query: 155 SHFAIADEEQSKKLIE 170
             F     +    L+E
Sbjct: 122 PTFKTIQNQHETALLE 137


>gi|148652066|ref|YP_001279159.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
 gi|148571150|gb|ABQ93209.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
          Length = 742

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 31/169 (18%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHP 62
           HNS    SE +D   +    QLLA+  T     V A AGSGKT  L  R   L+ + A P
Sbjct: 70  HNSVLSSSE-VDYAGELNPSQLLAATTTEGKVLVIAGAGSGKTKTLTYRTSYLIESGASP 128

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA-EITKIQGKKPNKSDMSKARHLL 121
           S++L LT T+ AA E+  RV  ++ A S   +  LS  ++  I                 
Sbjct: 129 SSILLLTFTRKAANEIKGRVKSLL-AESLADNRALSGLDLNAI----------------- 170

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
                T G     T H+FC  +++++     I   F I D   S+  ++
Sbjct: 171 -----TSG-----TFHSFCNMLLRRYSGLLGINPKFTILDTGDSEDALD 209


>gi|292670883|ref|ZP_06604309.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC
           43541]
 gi|292647504|gb|EFF65476.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC
           43541]
          Length = 1256

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 22/137 (16%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ ++         +L LT TKAAA+EM  R+           +
Sbjct: 24  VAAAAGSGKTRVLVERIISQVRTGTLSLDRILVLTFTKAAASEMRERI-----------E 72

Query: 95  EILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             L+AEI  I    G   + + + + R LL        G  + T H+FC+ ++Q      
Sbjct: 73  AALNAEIDVIVENGGALEDVAALERQRVLLT-------GADISTFHSFCQHLIQSHIDAT 125

Query: 152 NITSHFAIADEEQSKKL 168
            I   F IA E++ + L
Sbjct: 126 EIPPTFRIASEQEIRLL 142


>gi|254992021|ref|ZP_05274211.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL
           J2-064]
          Length = 541

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 30/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+   AN +   LL +T T A+AAEM  R+ + +      
Sbjct: 250 VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRIGKGL------ 303

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +E L+        + P+ + + +   LL           + T+H+FC  I++++  +A+
Sbjct: 304 -EEALA--------QNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 347

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197
           I  +F + +  +S  + +E  ++ L     ++NNE     F+ ++E
Sbjct: 348 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 389


>gi|317182762|dbj|BAJ60546.1| helicase [Helicobacter pylori F57]
          Length = 938

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +
Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 60


>gi|283470166|emb|CAQ49377.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 1217

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDCIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T+H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|182625416|ref|ZP_02953189.1| recombination helicase AddA [Clostridium perfringens D str.
           JGS1721]
 gi|177909413|gb|EDT71865.1| recombination helicase AddA [Clostridium perfringens D str.
           JGS1721]
          Length = 1271

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 31/166 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+          
Sbjct: 22  VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I+K   K P+   + +   LL           + T+H+FC E I   F L  
Sbjct: 72  -----GDAISKALEKDPSSEVIQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++   F I D+ +     E  K+  LA +  D   +  + F +++E
Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVE 160


>gi|261838828|gb|ACX98594.1| ATP-dependent nuclease [Helicobacter pylori 51]
          Length = 949

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +
Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 60


>gi|146313611|ref|YP_001178685.1| DNA-dependent helicase II [Enterobacter sp. 638]
 gi|145320487|gb|ABP62634.1| ATP-dependent DNA helicase UvrD [Enterobacter sp. 638]
          Length = 720

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L  + N+ P +++ +T T  AAAEM HR+ +++        
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLQSVENSSPYSIMAVTFTNKAAAEMRHRIAQLMGT------ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           + GG+ V T H     +++   ++AN+ 
Sbjct: 81  --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 108

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 109 QDFQILDSEDQLRLLK 124


>gi|332084670|gb|EGI89858.1| DNA helicase II [Shigella boydii 5216-82]
          Length = 720

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T
Sbjct: 4   SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+                                     LL+    + G
Sbjct: 62  FTNKAAAEMRHRI------------------------------------GLLMGT--SQG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++   ++AN+   F I D E   +L++
Sbjct: 84  GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124


>gi|312621145|ref|YP_004022758.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201612|gb|ADQ44939.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 756

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A AG+GKT +LV+ +++ L  N  A  S  + +T T  A +E+  R++E +     L
Sbjct: 30  YLKAGAGTGKTELLVELIIKCLNENPKASISNFVVITFTNKATSEVKRRLVERLYFDYSL 89

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           + +      +       N++ M++        ++    L V TIH FCE I++Q+     
Sbjct: 90  NHK---KLSSLSSLLADNRNIMNRQEDEKRKFVDLTSMLNVYTIHGFCEIILRQYGYLIG 146

Query: 153 ITSHFAI 159
           I+  F I
Sbjct: 147 ISPKFEI 153


>gi|315224517|ref|ZP_07866344.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287]
 gi|314945538|gb|EFS97560.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287]
          Length = 1060

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 12/144 (8%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT+ LV+  LR++L +  P     LL +T T  A  EM +R++E++  +S   
Sbjct: 12  NASAGSGKTYSLVKAYLRIILGSKQPDLFRQLLAITFTNKAVFEMKNRIIELLGVFSE-- 69

Query: 94  DEILS---AEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           D++L+   A  T++  +   P++    ++   L  IL       + TI  F   +++ F 
Sbjct: 70  DKMLTKPHAMFTELAKELNLPDEELRMRSAKALEHILHNYAAFNISTIDGFNHQLIRHFS 129

Query: 149 LEANITSHFAIADEEQSKKLIEEA 172
            + ++   F +  +  SK L+E +
Sbjct: 130 QDLHLNPFFEV--QLDSKALLERS 151


>gi|242373134|ref|ZP_04818708.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           M23864:W1]
 gi|242349085|gb|EES40686.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           M23864:W1]
          Length = 1218

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 37/196 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +   V+A AGSGKT +LV+R++ R+L        LL +T T  +A EM HRV + I   S
Sbjct: 24  QDVLVAAAAGSGKTAVLVERIIQRILRDKIDVDRLLVVTFTNLSAREMKHRVDQRIQEAS 83

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            + D              PN   +   R   I I +     ++ T+H+FC  ++QQ    
Sbjct: 84  -IED--------------PNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQ---- 117

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
                H+ + D + + +   EA+   L    +D   ++ +  Y+IL+    +  E L SD
Sbjct: 118 -----HYDVLDIDPNFRTSNEAENVLLLDQTID---DVLERHYDILDPDFIDLTEQLSSD 169

Query: 211 IISN--RTALKLIFFF 224
              +  R  +K ++FF
Sbjct: 170 RNDDQFRDIIKRMYFF 185


>gi|225026995|ref|ZP_03716187.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353]
 gi|224955680|gb|EEG36889.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353]
          Length = 1221

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 25/179 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AG+GKT +LV R+  L++   +P      L +T T AAAAEM  R+          
Sbjct: 20  VSAGAGAGKTRVLVSRMAELIMDEKNPVEADRFLVMTFTNAAAAEMKERI---------- 69

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                S ++ +   K P         H L   +       + T+H+FC  +++    E +
Sbjct: 70  -----SLDLEERLAKDPEN-------HYLRKQIRKIRQADISTVHSFCNHLIRTHYNELS 117

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           I   F I +E +   L ++A +  L        E   K         +D+ +E L+ D+
Sbjct: 118 IDPSFRIGEEGELFLLRQQAIEQLLEEAYASGRESFVKFAESYAPGKSDKVLEELVGDL 176


>gi|258424346|ref|ZP_05687226.1| recombination helicase AddA [Staphylococcus aureus A9635]
 gi|257845359|gb|EEV69393.1| recombination helicase AddA [Staphylococcus aureus A9635]
          Length = 1217

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV            
Sbjct: 29  VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I       P  + +   R   I I +     ++ T H+FC  ++QQ     NI 
Sbjct: 79  RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTFHSFCLKLIQQHYDVLNID 126

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L  AF E+ E +S+D   +        
Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176

Query: 214 NRTALKLIFFF 224
            R  +K ++FF
Sbjct: 177 -RMIIKQLYFF 186


>gi|304403945|ref|ZP_07385607.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9]
 gi|304346923|gb|EFM12755.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9]
          Length = 1338

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 24/138 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V+A AGSGKT +LV+R++R + A+     LL  T TKAAA+EM  RV             
Sbjct: 32  VAAAAGSGKTAVLVERIIRKISADTDVDRLLVATFTKAAASEMKERVR------------ 79

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEANIT 154
                   ++G      +    R  L  I  +     + T+H+FC E I   +PL   + 
Sbjct: 80  ------IALEGALARDPESEHLRRQLALINRS----SITTLHSFCLEVIRSYYPL-IGLD 128

Query: 155 SHFAIADEEQSKKLIEEA 172
             F +A E +S+ L  EA
Sbjct: 129 PGFRMAGETESELLRMEA 146


>gi|163803195|ref|ZP_02197077.1| DNA helicase II [Vibrio sp. AND4]
 gi|159173016|gb|EDP57850.1| DNA helicase II [Vibrio sp. AND4]
          Length = 724

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D +++ + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNEKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ + GG+ 
Sbjct: 66  KAAAEMRGRIEEL--------------------------------------MMGSTGGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  NGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|21666221|gb|AAM73615.1| DNA helicase II [Escherichia coli]
          Length = 133

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 39/147 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R   L+ + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 1   PRTNLLVLAGAGSGKTRVLVHRFAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ V T H     +++   
Sbjct: 61  --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175
           ++AN+   F I D E   +L++   K+
Sbjct: 83  MDANLPQDFQILDSEDQLRLLKRLIKA 109


>gi|307246245|ref|ZP_07528326.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307255229|ref|ZP_07537044.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259663|ref|ZP_07541387.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306852854|gb|EFM85078.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306861778|gb|EFM93757.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866308|gb|EFM98172.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 732

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+AN+   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121


>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 876

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 49/211 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +R+  ++   N+ PS +LC+T T  A
Sbjct: 7   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERITSIIKNGNSKPSEILCITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 67  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 88

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 89  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 148

Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215
                 A  E LE    ++ +T+I +I   R
Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 179


>gi|90424242|ref|YP_532612.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90106256|gb|ABD88293.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
          Length = 687

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          P  +  V A AGSGKT+ L  RV  LL+  A P  LL +T ++ AAAEMS RV  I+
Sbjct: 28 PAPALLVIAGAGSGKTNTLAHRVAHLLVDGADPRRLLLMTFSRRAAAEMSRRVERIV 84


>gi|229593437|ref|YP_002875556.1| DNA-dependent helicase II [Pseudomonas fluorescens SBW25]
 gi|229365303|emb|CAY53652.1| DNA helicase II [Pseudomonas fluorescens SBW25]
          Length = 727

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM HR+ +++  
Sbjct: 23  PVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLMGI 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 +P G+ V T H     +++   
Sbjct: 83  --------------------------------------SPAGMWVGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA ++  F I D +  ++L++
Sbjct: 105 QEAGLSQTFQILDSDDQQRLVK 126


>gi|168206214|ref|ZP_02632219.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str.
           JGS1987]
 gi|170662326|gb|EDT15009.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str.
           JGS1987]
          Length = 1271

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 36/198 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++++    +P     LL +T T AAA+EM  R+          
Sbjct: 22  VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151
                   I+K   K P+   + +   LL           + T+H+FC E I   F L  
Sbjct: 72  -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++   F I D+ +     E  K+  L  +  D   +  + F +++E       +  ++ I
Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILGDLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174

Query: 212 ISNRTALKLIFFFFSYLW 229
           I     LK   F  S  W
Sbjct: 175 I-----LKFYNFIMSGPW 187


>gi|77461864|ref|YP_351371.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf0-1]
 gi|77385867|gb|ABA77380.1| DNA helicase II [Pseudomonas fluorescens Pf0-1]
          Length = 727

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM HR+ +++  
Sbjct: 23  PVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLLGI 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                  P G+ V T H     +++   
Sbjct: 83  --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA ++  F I D +  ++L++
Sbjct: 105 QEAGLSQTFQILDSDDQQRLVK 126


>gi|302670100|ref|YP_003830060.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus
           B316]
 gi|302394573|gb|ADL33478.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus
           B316]
          Length = 1317

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 26/196 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +Q +      +  VSA AGSGKT +LV+R++++++       LL +T TKAAAA+M 
Sbjct: 6   TKEQQAVIDARDCNILVSAAAGSGKTAVLVERIIQMIMGGVDIDHLLVVTFTKAAAAQMK 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++   I   + L +E             P+   + +   L+          ++ TI +F
Sbjct: 66  EKI--TIAIQNKLVEE-------------PDNKHLQRQETLI-------HNAQITTIDSF 103

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI- 198
           C+ +++       I   F + D+ + + L E+  +  L        +     F   +E  
Sbjct: 104 CQYVLRNNFNVIGIDPSFRVGDDGELRLLKEDVMQDMLEEEYAKCKDGENSDFLFCMEYF 163

Query: 199 ---SNDEDIETLISDI 211
              S+D+ +E  IS++
Sbjct: 164 STGSSDKKVEEYISEL 179


>gi|156972692|ref|YP_001443599.1| DNA-dependent helicase II [Vibrio harveyi ATCC BAA-1116]
 gi|156524286|gb|ABU69372.1| hypothetical protein VIBHAR_00351 [Vibrio harveyi ATCC BAA-1116]
          Length = 724

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ + GG+ 
Sbjct: 66  KAAAEMRGRIEEL--------------------------------------MMGSAGGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125


>gi|153834693|ref|ZP_01987360.1| DNA helicase II [Vibrio harveyi HY01]
 gi|148868889|gb|EDL67949.1| DNA helicase II [Vibrio harveyi HY01]
          Length = 723

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ + GG+ 
Sbjct: 65  KAAAEMRGRIEEL--------------------------------------MMGSAGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 124


>gi|91228031|ref|ZP_01262116.1| DNA helicase II [Vibrio alginolyticus 12G01]
 gi|269964541|ref|ZP_06178780.1| DNA helicase II [Vibrio alginolyticus 40B]
 gi|91188260|gb|EAS74559.1| DNA helicase II [Vibrio alginolyticus 12G01]
 gi|269830668|gb|EEZ84888.1| DNA helicase II [Vibrio alginolyticus 40B]
          Length = 724

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ + GG+ 
Sbjct: 66  KAAAEMRGRIEEL--------------------------------------MMGSAGGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125


>gi|261343070|ref|ZP_05970928.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316]
 gi|288314635|gb|EFC53573.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316]
          Length = 720

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L  + N  P +++ +T T  AAAEM HR+ +++        
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMAVTFTNKAAAEMRHRIAQLMGT------ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           + GG+ V T H     +++   ++AN+ 
Sbjct: 81  --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 108

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 109 QDFQILDSEDQLRLLK 124


>gi|189463365|ref|ZP_03012150.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136]
 gi|189429794|gb|EDU98778.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136]
          Length = 1110

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 8/137 (5%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86
           +D  R     A+AGSGKT  L  + ++ L+ + H    +L +T T  A AEM  R+LE +
Sbjct: 32  TDYPRLLVYKASAGSGKTFTLAVQYIKQLIEDTHAYRRILAVTFTNKATAEMKKRILEQL 91

Query: 87  TAWSHL---SDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEA 142
              ++    SD  L  E+ KI  K  N++++ + AR  L  I+      +++TI +F ++
Sbjct: 92  FGLANGLKSSDSYLE-ELLKITSK--NEAEIRRAAREALTNIIHDYSRFRIETIDSFFQS 148

Query: 143 IMQQFPLEANITSHFAI 159
           +M+    E  + ++ +I
Sbjct: 149 VMRNLARELELGANMSI 165


>gi|188995913|ref|YP_001930165.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188595593|dbj|BAG34568.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 1074

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           +A+AGSGKTH L    LRL L        +  +T T  A AEM  R+LE +   +     
Sbjct: 11  TASAGSGKTHTLTGEYLRLALRTRGAFRYIQAVTFTNKATAEMKERILEELYGLAVGGSS 70

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             + E+ +       +  + +A+ +L  IL     L+V+TI +F + +M+ F  E  +  
Sbjct: 71  PFAEELMQELALTTEQLQV-RAQEVLTEILNDYSSLRVKTIDSFFQEVMRAFSHELGLPG 129

Query: 156 HFAIADEEQSKKLIEEA 172
            F I  E + K ++E+A
Sbjct: 130 GFRI--EMEQKAVLEQA 144


>gi|113866335|ref|YP_724824.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113525111|emb|CAJ91456.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16]
          Length = 699

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 32/49 (65%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT+ L  RV  L+LA A P  +L LT ++ AAAEM  RV  I+
Sbjct: 46 AGAGSGKTNTLAHRVAHLVLAGADPRRILLLTFSRRAAAEMGRRVERIV 94


>gi|325843353|ref|ZP_08167936.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1]
 gi|325489382|gb|EGC91755.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1]
          Length = 1198

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 29/131 (22%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           +SA AGSGKT +LV+R++ +++    +   LL +T T+AAAAEM  R+       S + D
Sbjct: 30  ISAGAGSGKTAVLVERMIQKIIQEKLNIDELLVMTFTEAAAAEMKQRMR------SRIQD 83

Query: 95  EILSA---EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           E+      E  K+Q  K ++S +S                   T HAFC  +++++    
Sbjct: 84  ELEKQPYNEHLKVQLNKISQSHIS-------------------TFHAFCNKLIKRYYYLL 124

Query: 152 NITSHFAIADE 162
            +   F IAD+
Sbjct: 125 ELDPVFKIADD 135


>gi|296105303|ref|YP_003615449.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059762|gb|ADF64500.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 720

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L  + N  P +++ +T T  AAAEM HR+ +++        
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMAVTFTNKAAAEMRHRIAQLMGT------ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           + GG+ V T H     +++   ++AN+ 
Sbjct: 81  --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 108

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 109 QDFQILDSEDQLRLLK 124


>gi|295091233|emb|CBK77340.1| recombination helicase AddA, Firmicutes type [Clostridium cf.
          saccharolyticum K10]
          Length = 1273

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
          ++ TK ++ +     R+  VSA AGSGKT +LV+R++R++     P     LL +T TKA
Sbjct: 3  VNWTKEQRQVIESRDRNLLVSAAAGSGKTAVLVERIIRMITDGERPGDIERLLVMTFTKA 62

Query: 74 AAAEMSHRVLEII 86
          AA+EM  R+ + I
Sbjct: 63 AASEMRERIHDAI 75


>gi|283795557|ref|ZP_06344710.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1]
 gi|291077226|gb|EFE14590.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1]
          Length = 1273

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
          ++ TK ++ +     R+  VSA AGSGKT +LV+R++R++     P     LL +T TKA
Sbjct: 3  VNWTKEQRQVIESRDRNLLVSAAAGSGKTAVLVERIIRMITDGERPGDIERLLVMTFTKA 62

Query: 74 AAAEMSHRVLEII 86
          AA+EM  R+ + I
Sbjct: 63 AASEMRERIHDAI 75


>gi|295095174|emb|CBK84264.1| ATP-dependent DNA helicase UvrD [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 724

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L  + N  P +++ +T T  AAAEM HR+ +++        
Sbjct: 31  VLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMAVTFTNKAAAEMRHRIAQLMGT------ 84

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           + GG+ V T H     +++   ++AN+ 
Sbjct: 85  --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 112

Query: 155 SHFAIADEEQSKKLIE 170
             F I D E   +L++
Sbjct: 113 QDFQILDSEDQLRLLK 128


>gi|255323065|ref|ZP_05364201.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae
           RM3277]
 gi|255299927|gb|EET79208.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae
           RM3277]
          Length = 931

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 20/174 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + +LL+ A    +  LT TK AA EM  R+++          E
Sbjct: 7   LEASAGSGKTFALSVRFIAILLSGADAREITALTFTKKAANEMKERIVQTFLRLEEKGAE 66

Query: 96  ILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +  AE+ +I G   +K      ++A H L         LK+ T  +F   I++ F L   
Sbjct: 67  L--AELEQILGAGRDKILAMRDARATHFL------ESDLKIGTFDSFFVGILRSFCLNLG 118

Query: 153 ITSHFAIAD---EEQSKKLIEEAKK-----STLASIMLDNNEELKKAFYEILEI 198
           +++ F +++   E Q  + +    K       LA+ ++   E  + +F+E LE+
Sbjct: 119 LSADFEVSENLNELQRGEFVASVSKDMRLLKALAN-LIATAERSQSSFFESLEM 171


>gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
           20162]
 gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
           20162]
          Length = 802

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 12/106 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII-----TAW 89
           + A AGSGKT +L +R+  LL A   HP  +L +T T  AAAEM  RV ++I     T W
Sbjct: 51  IVAGAGSGKTAVLTRRIAYLLRARGMHPGQILAITFTNKAAAEMRERVAQLIGPRANTMW 110

Query: 90  ----SHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129
                     IL A+   + G   N S  D   +R LL  I++  G
Sbjct: 111 VSTFHSTCVRILRAQAGLLPGMNSNFSIYDADDSRRLLTMIVKEMG 156


>gi|297616808|ref|YP_003701967.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144645|gb|ADI01402.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680]
          Length = 709

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 41/159 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ++ ++Q + E +L  D      V A AGSGKT +L  R+  L      P  +L +T T  
Sbjct: 4   VEGLNQEQKEAVLHVDG--PCLVLAGAGSGKTRVLTTRLAYLCHTGIRPRNILAITFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  +I  ++                                       G  +
Sbjct: 62  AAREMKERVERLIPGFT---------------------------------------GQWI 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           QT HA C  I++Q       +  F+I DE + + L++E 
Sbjct: 83  QTFHATCYRILRQEIDRLGYSRDFSIVDEAEQRALVKEC 121


>gi|323704721|ref|ZP_08116299.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536183|gb|EGB25956.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1073

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 28/154 (18%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSH 80
           EQ  A D  ++  + A AGSGKT +L +R ++LL  + +     ++ +T T+ AAAEM  
Sbjct: 14  EQSRALDIGKNVALKAGAGSGKTRVLTKRYIKLLNDVTDIKIDNIVAITFTRKAAAEMKE 73

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +          EI S   +   GKK      +  R  LI          + TIH FC
Sbjct: 74  RIRK----------EIESLCKSDKDGKK-----WTVFRDSLIFA-------NIDTIHGFC 111

Query: 141 EAIMQQFPLEANITSHFAIADEEQ----SKKLIE 170
           E +++   +E ++   F+I DE +     KK++E
Sbjct: 112 EKMIRDNFVETSVDPTFSIMDEAEVSTAVKKMVE 145


>gi|323692610|ref|ZP_08106842.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum
           WAL-14673]
 gi|323503307|gb|EGB19137.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum
           WAL-14673]
          Length = 1222

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 26/200 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAA 74
           ++ TK ++ +     R+  VSA AGSGKT +LV+R++R++  ++      LL +T TKAA
Sbjct: 3   VNWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITGDSPIDIDRLLVMTFTKAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+                A I K   + P    + +     +T+       ++ 
Sbjct: 63  AAEMRERI---------------QAAIEKKLEEDPGNEHLQQQA---VTVQFA----QIT 100

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TI +FC  I+++     +I   F + DE +   L  E  +  +     +  E  ++ F +
Sbjct: 101 TIDSFCLHILREHFDCIDIDPAFRVGDEGEMLLLRAEVLQELMEDSYANGGEAFER-FVD 159

Query: 195 ILEISN-DEDIETLISDIIS 213
              I   D  IE  I  + S
Sbjct: 160 TYSIGKADGGIEDYIMQVFS 179


>gi|325286154|ref|YP_004261944.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
 gi|324321608|gb|ADY29073.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
          Length = 1039

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           SA+AGSGKT+ L +  L+++L++A   +   +L +T T  A  EM  R+L+ + A+S + 
Sbjct: 10  SASAGSGKTYTLAKEYLKIILSSATAKSYRQILAITFTNKAVNEMKQRILDNLYAFSKVD 69

Query: 94  DEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           +E   +++     K+ N S      +A+ +  +IL       + TI  F   +++ F  +
Sbjct: 70  EENKPSDLFLDVAKELNVSTEELQKRAKQVHKSILHNYAFFDISTIDKFTHRLIRTFAKD 129

Query: 151 ANITSHFAIA 160
             I  +F + 
Sbjct: 130 LKIPQNFEVV 139


>gi|304436811|ref|ZP_07396777.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370183|gb|EFM23842.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 1264

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 29/190 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTK 72
           D ++ T  +Q        +  V+A AGSGKT +LV+R++   + N   S   +L LT TK
Sbjct: 3   DRLTFTADQQRAIDARGHNILVAAAAGSGKTRVLVERIIS-QVRNEELSLDRILVLTFTK 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+           +  L+AEI  I G      ++ +     I + +      
Sbjct: 62  AAALEMRERI-----------EAALNAEIDAIAGDAGISKEIDRLERQRILLTDA----D 106

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+FC+ ++Q      +I   F +A E++ + L    K+  +       +E L++ +
Sbjct: 107 ISTFHSFCQRLLQAHIDATDIPPTFRLASEQEIRLL----KRDVM-------DELLERKY 155

Query: 193 YEILEISNDE 202
            E ++  +DE
Sbjct: 156 EEAVQGGSDE 165


>gi|187251691|ref|YP_001876173.1| UvrD/REP helicase [Elusimicrobium minutum Pei191]
 gi|186971851|gb|ACC98836.1| UvrD/REP helicase [Elusimicrobium minutum Pei191]
          Length = 1074

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 38/168 (22%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
           QT+ E    +D  R+  V A AG+GKT +L+ R+  L++  N     ++ LT T+ AAAE
Sbjct: 8   QTRYEASTVTD--RNIVVEAGAGTGKTTLLISRLCYLMIVKNISVERIVALTFTEKAAAE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGK-----KPNKSDMSKARHL-----------L 121
           +  R               LSA++ KI  +     + +K  +    HL           +
Sbjct: 66  IKIR---------------LSAQLQKIIKECLSVTQKDKITLELLAHLSKEEIIIRAQRV 110

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +  LE   G  + TIH FC  I++ +P+EA I+   A+ DE Q ++ +
Sbjct: 111 LEFLER--GF-ISTIHGFCSYILKAYPVEAGISPS-AVVDEGQRRETV 154


>gi|312963948|ref|ZP_07778419.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|311281983|gb|EFQ60593.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 727

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM HR+ +++  
Sbjct: 23  PVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLMGI 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 +P G+ V T H     +++   
Sbjct: 83  --------------------------------------SPAGMWVGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA +   F I D +  ++L++
Sbjct: 105 QEAGLAQTFQILDSDDQQRLVK 126


>gi|284928732|ref|YP_003421254.1| Rep family ATP-dependent DNA helicase [cyanobacterium UCYN-A]
 gi|284809191|gb|ADB94896.1| ATP-dependent DNA helicase, Rep family [cyanobacterium UCYN-A]
          Length = 772

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L++ N  +P ++L +T T  AA EM  R+           D
Sbjct: 28  VIAGAGSGKTRALTYRIANLIIYNKVNPESILAVTFTNKAAKEMKDRL-----------D 76

Query: 95  EILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           ++L+ EI+    K+P  + S+ ++ + L     +T   L + T H+ C  I++
Sbjct: 77  KLLAQEISSKNYKQPFDSLSEFNQKKLLSFIYKKTTKQLWIGTFHSLCARILR 129


>gi|222823417|ref|YP_002574991.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari
           RM2100]
 gi|222538639|gb|ACM63740.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari
           RM2100]
          Length = 915

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 12/138 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT T   A EM  R+ +    +  L + 
Sbjct: 11  LEASAGSGKTFALSVRFVALVLMGAKINEILALTFTNKTANEMKERIFKTFLEFDMLENG 70

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILET------PGGLKVQTIHAFCEAIMQQFPL 149
              AE  ++         + K++  LI + E          L + T  +F   I++ F L
Sbjct: 71  QNKAECNELMKM------LDKSKEELIALKEKYKDEFLRSKLNIYTFDSFFSQIIRSFAL 124

Query: 150 EANITSHFAIADEEQSKK 167
             ++ S F I +E  + K
Sbjct: 125 NLDLMSDFIITEESDNYK 142


>gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 893

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 43/164 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A+ G GKTHIL +RV +  L       +LCLT T  AA EM  R+  ++         
Sbjct: 26  VLASPGCGKTHILAERVKQARLQGIVYEDMLCLTFTNRAAREMLSRIKSVVA-------- 77

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                         E    L+V  +H FC   +     E  + +
Sbjct: 78  ------------------------------EDFSALQVGNVHHFCAKFLFD---EGVVPA 104

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             +I DEE+   +I E K+    ++M  NN   ++ +YEI+  +
Sbjct: 105 ETSIIDEEECVSIIAEYKQQNEEAVM--NNYAQQREYYEIIHFA 146


>gi|256380499|ref|YP_003104159.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827]
 gi|255924802|gb|ACU40313.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827]
          Length = 781

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 45/166 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  LL    AHP  ++ +T T  AAAEM  RV +++        
Sbjct: 40  VVAGAGSGKTRVLTRRIAHLLAERGAHPGEIMAITFTNKAAAEMKERVADLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                +AR + ++           T H+ C  ++++      I+
Sbjct: 93  --------------------PRARSMWVS-----------TFHSMCVRLVRREHKALGIS 121

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           S F+I D + +++LI      TL +  LD + +   A    + ISN
Sbjct: 122 SSFSIYDSDDTRRLI------TLVARDLDLDPKRYPARTLAIHISN 161


>gi|34541655|ref|NP_906134.1| UvrD/REP helicase domain-containing protein [Porphyromonas
           gingivalis W83]
 gi|34397973|gb|AAQ67033.1| UvrD/REP helicase domain protein [Porphyromonas gingivalis W83]
          Length = 1102

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 20/145 (13%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAAAAEMSHRVLE-----IITAWS 90
           +A+AGSGKTH L    LRL L        +  +T T  A AEM  R+LE      +   S
Sbjct: 11  TASAGSGKTHTLTGEYLRLALRTRGAFRYIQAVTFTNKATAEMKERILEELYSLAVGGSS 70

Query: 91  HLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             ++E+   L+    ++Q          +A+ +L  IL     L+V+TI +F + +M+ F
Sbjct: 71  PFAEELMQELALTTEQLQ---------VRAQEVLTEILNDYSSLRVKTIDSFFQEVMRAF 121

Query: 148 PLEANITSHFAIADEEQSKKLIEEA 172
             E  +   F I  E + K ++E+A
Sbjct: 122 SHELGLPGGFRI--EMEQKAVLEQA 144


>gi|296132525|ref|YP_003639772.1| recombination helicase AddA [Thermincola sp. JR]
 gi|296031103|gb|ADG81871.1| recombination helicase AddA [Thermincola potens JR]
          Length = 1279

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 25/156 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AG+GKT +LV+R++R ++    P     LL +T TKAAA EM  R+          
Sbjct: 23  VSAAAGAGKTAVLVERIIRRIVDPIDPVDVDRLLIVTFTKAAANEMRERI---------- 72

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   I +     P    +++   LL           + T+H+FC  +++Q+     
Sbjct: 73  -----GLAIARELDNNPASLHLNRQATLLSRAY-------ITTLHSFCLDVVRQYFYRLE 120

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +   F +AD+ ++  ++ E  +     +    +EE 
Sbjct: 121 LDPAFRVADDAEAALMLMETLEDLFEELYSSGDEEF 156


>gi|320107768|ref|YP_004183358.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319926289|gb|ADV83364.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 1189

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLE 84
           A D TRS  V A AGSGKT +L+QR L+LLL      P+ ++ +T T  A  E+ +R+L 
Sbjct: 14  ALDTTRSWIVEAPAGSGKTGLLIQRYLKLLLDPQIESPAQVIAITFTTKATEEIRNRILS 73

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +++ S    E+ S E T    +   K  +++       +L+ P  L ++TI +    I 
Sbjct: 74  ALSSASQ-DTEVDSFERTT---RDLAKQVLARDAEHGWQLLQQPEQLNIRTIDSLAAEIA 129

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--EISNDE 202
           +  P+ A        A  E +  L   A +  +  +    + EL +A   IL    +N  
Sbjct: 130 RSMPVLAGGWGKLQPA--EDAWPLYARAARRVMLKLG-GEDRELHQAIETILLHRDANLA 186

Query: 203 DIETLISDIISNR 215
            +E LI  ++  R
Sbjct: 187 GVEALICGMLQKR 199


>gi|291544540|emb|CBL17649.1| recombination helicase AddA, Firmicutes type [Ruminococcus sp.
           18P13]
          Length = 1187

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 29/152 (19%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89
           S  VSA AGSGKT +LV+R++R L    HP   + L  +T T  AAAEM  R        
Sbjct: 18  SFLVSAAAGSGKTSVLVERLIRQLTDPEHPVSAARLAVVTFTNDAAAEMKSR-------- 69

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                  L   +T+   + P    + + +  L          K+ TIH+FC  +++    
Sbjct: 70  -------LEHALTQCIAQDPRNVWLRQQQSQLQCA-------KICTIHSFCFDLIRDHCA 115

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           E +IT  F I +E +   ++       LA IM
Sbjct: 116 ELDITPTFRILEETEMNMMVSRG----LADIM 143


>gi|317488290|ref|ZP_07946855.1| hypothetical protein HMPREF1023_00553 [Eggerthella sp. 1_3_56FAA]
 gi|316912607|gb|EFV34151.1| hypothetical protein HMPREF1023_00553 [Eggerthella sp. 1_3_56FAA]
          Length = 191

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 39/166 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-----LLCLTHTKAAAAEMSHRVLEIITAWS 90
           VSA AGSGKT  L QR+   LL  + P+      +L +T T+ AAAE+  RV   + A  
Sbjct: 23  VSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAITFTEKAAAEIKARVKRTLRA-- 80

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E L+ E  ++ G                          + TIH  C  I++   L+
Sbjct: 81  ----EGLAEEALRVDGA------------------------WISTIHGMCARILRAHALD 112

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
             +   F I  + +  + + +A    L     D+N+ + +  Y  L
Sbjct: 113 LGLDPAFGIMGDAERAEAVADAIDGALG----DDNDIIARGSYAAL 154


>gi|299143270|ref|ZP_07036350.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298517755|gb|EFI41494.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 1036

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 40/194 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLL----LANAHP-STLLCLTHTKAAAAEMSHRVLEII 86
           ++  +SA AG+GKT +L +R L +L    L   +    +L +T+T  AA EM        
Sbjct: 17  KNICLSAGAGTGKTKVLTERFLNILKNGNLTKGYELEEILAITYTNKAAFEMK------- 69

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQ 145
                          +KI+G       +SK++ + L  I +     ++ TIHAFC  +++
Sbjct: 70  ---------------SKIKGA------LSKSKDNKLKDIYKFFSNAQIFTIHAFCGELIR 108

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           ++PL   +   F I +  +++ ++ +A  + L     +N+  L +   E+ EI    DI 
Sbjct: 109 KYPLAVEVDPEFEICEPLEAEDILRDATNTVLKK--YENDMRLYELLMELSEI----DIR 162

Query: 206 TLISDIISNRTALK 219
                IIS    LK
Sbjct: 163 KFSDAIISLYDDLK 176


>gi|331082717|ref|ZP_08331840.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400336|gb|EGG79978.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 29/157 (18%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +S T+ +Q +      +  VSA AGSGKT +LV+R+++ +    +P     LL +T T+A
Sbjct: 3   VSWTEEQQKVIDTRNCNILVSAAAGSGKTAVLVERIIQRITDKNNPVDIDELLIVTFTRA 62

Query: 74  AAAEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           AA EM  R+ + I     ++  DE L  + T +              H LIT        
Sbjct: 63  AAGEMKERIRQAIEKKLEANPEDEHLQRQSTLVH-------------HALIT-------- 101

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
              TI +FC  I++ +    ++   F + DE + + L
Sbjct: 102 ---TIDSFCSYIVKNYFHLIDLDPSFRMGDEGEMRLL 135


>gi|329938133|ref|ZP_08287584.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045]
 gi|329302622|gb|EGG46512.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045]
          Length = 901

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   N HP  +L +T T  AA EM  RV +++   +H   
Sbjct: 101 IVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNKAAGEMKERVEQLVGPRAH--- 157

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I+++       T
Sbjct: 158 -----------------------------------AMWVMTFHSACVRILRRESKRLGFT 182

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 183 SSFSIYDAADSKRLM 197


>gi|291548281|emb|CBL21389.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Ruminococcus sp.
           SR1/5]
          Length = 296

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 29/169 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R+  VSA AGSGKT +LVQR+L  ++    P     LL +T T+AAA EM  R+   +  
Sbjct: 18  RNILVSAAAGSGKTAVLVQRILSKIMDPLKPVDIDRLLIMTFTRAAAGEMRERIERGL-- 75

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                D+ L+ +        P+   + +   L+ T        ++ TI  FC  +++ + 
Sbjct: 76  -----DQALAED--------PDNEHLQRQMTLIHTA-------QITTIDGFCAYVIRNYF 115

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
               +   +  ADE + K L E+     L  +  D+  E K  F   +E
Sbjct: 116 HLIGLDPGYRTADEGELKLLQED----VLKELFEDHYAERKADFTAFVE 160


>gi|313673705|ref|YP_004051816.1| uvrd/rep helicase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940461|gb|ADR19653.1| UvrD/REP helicase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 1029

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 27/151 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLL---LANAH------P----STLLCLTHTKAAAAEMSHRV 82
           + A+AGSGKT+ L  R + LL   L N +      P    S+++ +T T  A+ EM  RV
Sbjct: 20  IKASAGSGKTYNLASRFIELLGLYLKNKNFSVAIIPPKDLSSIIAITFTNKASLEMKDRV 79

Query: 83  LEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++ +     +  +E+  ++ITK             AR LLI IL+    + V TI +F  
Sbjct: 80  MKFLKGLGGIRKNELEKSDITK-----------EDARKLLIHILKNFEHINVTTIDSFMN 128

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            + + F ++  +   + I  +  S+K+ E A
Sbjct: 129 TLHKAFAVDLGVYPDYDITFD--SEKIFESA 157


>gi|304314662|ref|YP_003849809.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588121|gb|ADL58496.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 918

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A  G+GKT I+V+RV +L+      P +L+ +T TK AA E+  R+L           
Sbjct: 24  VVAGPGAGKTRIIVERVAQLIEERGVDPGSLVVITFTKKAADELKERIL----------- 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G+  ++++                 +++ TIH+FC  I++ +P    + 
Sbjct: 73  -----------GRVGSRAEE----------------MQISTIHSFCNRILRTYPDHHPLG 105

Query: 155 SHFAIADEEQSKKLIEEAKK 174
           SHF + DEE+    I + ++
Sbjct: 106 SHFHVLDEEKQLMFIYDHRE 125


>gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
 gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
          Length = 865

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 43/152 (28%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79
           + ++ +  +  R+  + A AG+GKT+ L  R+++LL    A P  +LCLT T  A  EM 
Sbjct: 13  QQQKYVVDELGRNILLLAAAGTGKTNTLALRIVKLLREGRAAPEQVLCLTFTNRACKEMK 72

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIH 137
            R++  +                                         P GLK  V+T H
Sbjct: 73  ERIVSAV----------------------------------------GPEGLKIEVRTFH 92

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +FC  ++Q F    ++ S F I DE+  ++L+
Sbjct: 93  SFCYELIQAFVKTTDLPSGFVIYDEDDCRELL 124


>gi|260589313|ref|ZP_05855226.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583]
 gi|260540394|gb|EEX20963.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583]
          Length = 1223

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 29/157 (18%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +S T+ +Q +      +  VSA AGSGKT +LV+R+++ +    +P     LL +T T+A
Sbjct: 3   VSWTEEQQKVIDTRNCNILVSAAAGSGKTAVLVERIIQRITDKNNPVDIDELLIVTFTRA 62

Query: 74  AAAEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           AA EM  R+ + I     ++  DE L  + T +              H LIT        
Sbjct: 63  AAGEMKERIRQAIEKKLEANPEDEHLQRQSTLVH-------------HALIT-------- 101

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
              TI +FC  I++ +    ++   F + DE + + L
Sbjct: 102 ---TIDSFCSYIVKNYFHLIDLDPSFRMGDEGEMRLL 135


>gi|302343284|ref|YP_003807813.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301639897|gb|ADK85219.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 1159

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 29/164 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKAAAAEMSHRVLEII 86
           R+  V+A AG+GKT  LV+  + LL  N       P  ++ +T T+ AAAEM  RV++ +
Sbjct: 10  RNYCVTAGAGAGKTSCLVKAYVGLLAGNDQRPPLAPRQIVAITFTEKAAAEMRGRVMDRV 69

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A        L+A+      +  N+ + S                 + TIH FC A++++
Sbjct: 70  AA--------LAAKEGGRWAEIINQLEWS----------------PISTIHGFCAALLRE 105

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +     +   FAI D +   +++ EA    L   M  ++  L +
Sbjct: 106 YGSLLGLDPDFAILDGQAFDEMLSEAVAEVLRQAMDHDDPALGR 149


>gi|160945992|ref|ZP_02093218.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443723|gb|EDP20728.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1228

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 25/167 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T ++Q   +D   +  VSA AGSGKT +L +R ++L+    HP     LL +T T AAAA
Sbjct: 7   TPAQQAAIADRGGALLVSAAAGSGKTAVLTERAVQLITDPEHPVNADRLLIVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ + +   S L               +P  + + + R LL      P    + TI
Sbjct: 67  ELRARIGQALLHRSQL---------------QPGNAMLRRQRMLL---QRAP----ICTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            AFC  ++ +     +I   FA AD    + L   A   TL +   D
Sbjct: 105 DAFCLNLLHKHFQALDIPPDFAPADPGTVQLLRGAALAETLENAYRD 151


>gi|206896426|ref|YP_002246429.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206739043|gb|ACI18121.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 696

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 42/167 (25%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PST 64
           + E  +++DL    ++++   + P +   + A  GSGKT +L  R L   +   H  P  
Sbjct: 32  YNEDVDSVDLSKLNEAQKQAVTAPPKPLAIIAGPGSGKTRVLTYRAL-FAVKEWHLPPER 90

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA E+  R+  +I       D I +A                         
Sbjct: 91  ILAITFTNKAADELKERLGRLIPE----GDRIFAA------------------------- 121

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
                     T+H+F   +++ F   A I+ +F I D++ SK LIE+
Sbjct: 122 ----------TMHSFAARMLRYFAPYAGISQNFVIYDDDDSKGLIED 158


>gi|217032964|ref|ZP_03438438.1| hypothetical protein HPB128_182g18 [Helicobacter pylori B128]
 gi|216945333|gb|EEC24007.1| hypothetical protein HPB128_182g18 [Helicobacter pylori B128]
          Length = 68

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +
Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 60


>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
 gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
          Length = 870

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 49/211 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++   N+ PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAKRVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 61  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK---- 189
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++    
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQRVID 142

Query: 190 -----KAFYEILEISNDEDIETLISDIISNR 215
                +A  E LE    ++ +T+I +I   R
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173


>gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300074875|gb|ADJ64274.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 707

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT+ L  RV RL+L  A P  +L L+ ++ AAA+M  RV ++I
Sbjct: 50  IVAGAGSGKTNTLAHRVARLVLEGADPQRILLLSFSRRAAADMGRRVGQVI 100


>gi|66360164|ref|XP_627217.1| UvrD like super family I helicase involved in nucleotide excision
           repair, possible bacterial horizontal transfer
           [Cryptosporidium parvum Iowa II]
 gi|46228624|gb|EAK89494.1| UvrD like super family I helicase involved in nucleotide excision
           repair, possible bacterial horizontal transfer
           [Cryptosporidium parvum Iowa II]
          Length = 917

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           S  + A  G+GKT  L  R++R LL+   P  +L LT TK AA E+  RV  I+ + S  
Sbjct: 49  SLLIVAGPGTGKTATLTSRIVRFLLSGYSP--ILALTFTKKAANELKSRV-SIVYSSSSK 105

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                S +I         K+D+   +      + TP  + + TIH+FC  +++++     
Sbjct: 106 IIYSKSKQI---------KNDLRNEKGF-SDFVPTPE-IFIGTIHSFCWKLLKEYGSFIG 154

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI 180
           +    AI D+E + KL++      L+ +
Sbjct: 155 LPKDIAIIDKELAIKLLKSCLSENLSKV 182


>gi|303231758|ref|ZP_07318481.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513707|gb|EFL55726.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1273

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 35/171 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91
           V+A AGSGKT +LV+R++  L    +P     L+ +T TKAAAAEMS R+ + +  A   
Sbjct: 28  VAAAAGSGKTAVLVERIITRLKDMENPLSVQELMVVTFTKAAAAEMSARIGVALAKAMES 87

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D+ L A + +     P+                      + T+H+FC+ +        
Sbjct: 88  TDDKALQARLERQLNLLPSA--------------------HISTLHSFCQWV-------- 119

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISN 200
            I S+F   D   + ++  EA+ + L   +L+N   E  +   Y I ++S+
Sbjct: 120 -IRSYFYKLDIPPTARIGNEAEMALLKQEVLENLLKEAYEHNMYGIFDLSD 169


>gi|42561294|ref|NP_975745.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492792|emb|CAE77387.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|301321313|gb|ADK69956.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 722

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 48/189 (25%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +DL++  +   +L +D P R   + A AGSGKT ++  ++  L+   +  P+ +L +T T
Sbjct: 7   LDLLNSQQLAAVLNTDKPVR---IIAGAGSGKTRVITTKIAYLIEKKDIDPTRILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RVL+I                TK Q K P                      
Sbjct: 64  NKAAKEMKERVLQI----------------TKNQKKSP---------------------- 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--- 188
            + T HA+C  +++       +   F I D +  K++I+ A K   ++I L  N++    
Sbjct: 86  FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKE--SNIELSENDKKTFD 143

Query: 189 KKAFYEILE 197
           KK  Y+I E
Sbjct: 144 KKILYKIKE 152


>gi|207111045|ref|ZP_03245207.1| helicase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 56

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +
Sbjct: 3  LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 53


>gi|300782729|ref|YP_003763020.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
           mediterranei U32]
 gi|299792243|gb|ADJ42618.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
           mediterranei U32]
          Length = 804

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  LL     HP  ++ +T T  AAAEM  RV  ++        
Sbjct: 45  VVAGAGSGKTRVLTRRIAYLLGQRRVHPGEIMAITFTNKAAAEMRERVAALV-------- 96

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G++ N                    + V T H+ C  I+++     +++
Sbjct: 97  -----------GRRAN-------------------AMWVSTFHSMCVRILRREAKVLDMS 126

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D + +K+LI
Sbjct: 127 SSFSIYDSDDTKRLI 141


>gi|297158179|gb|ADI07891.1| ATP-dependent DNA helicase II [Streptomyces bingchenggensis BCW-1]
          Length = 829

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A   HP  +L +T T  AA EM  RV E++        
Sbjct: 88  IVAGAGSGKTRVLTHRIAYLLGARGVHPGQILAITFTNKAAGEMKERVEELV-------- 139

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 140 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKKLGFT 169

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 170 SSFSIYDAADSKRLM 184


>gi|88802036|ref|ZP_01117564.1| ATP-dependent helicase [Polaribacter irgensii 23-P]
 gi|88782694|gb|EAR13871.1| ATP-dependent helicase [Polaribacter irgensii 23-P]
          Length = 1052

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 10/129 (7%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  LV++ L++LL +        +L +T T  AA EM  RVL  +  +S   
Sbjct: 11  NASAGSGKTFTLVKQYLKVLLTSEDLFMFQKVLAITFTNKAAGEMKERVLSSLEGFS--- 67

Query: 94  DEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            E  + ++ K+  ++ N   ++   +++++L  IL+      + TI +F   I++ F  +
Sbjct: 68  -EGNTNDLLKMILEETNINQRTVQERSKNILDAILKNYAAFSITTIDSFTHKIIKSFAHD 126

Query: 151 ANITSHFAI 159
             ++ +F +
Sbjct: 127 LGLSGNFEV 135


>gi|317063871|ref|ZP_07928356.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC
           49185]
 gi|313689547|gb|EFS26382.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC
           49185]
          Length = 1030

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AG+GKT+ L    +  L        +L +T TK A AE+  R+L+ +     L + 
Sbjct: 14  LKASAGTGKTYRLSLEYVGALCRGIDFKDILVMTFTKKATAEIKERILKFL---KELEEN 70

Query: 96  ILSAEITKIQGKK--PN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEA 151
               E  K   KK  P+ + +  K   +   +++    LKV TI AF   I ++      
Sbjct: 71  TKDGESIKENLKKIYPDMEFNHEKISSIYRDLIQNRDKLKVYTIDAFTNLIFKKAIAPYL 130

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLI 208
            I S+  I D+E  K LI+  +K      + DN ++  +AF   LE ++++D+E   TLI
Sbjct: 131 KIYSYEIIDDDENRKILIKTFQK------IFDNKDDF-RAFKGFLEDNSEKDMENYLTLI 183

Query: 209 SDIISNR 215
            ++++ R
Sbjct: 184 KNLLNER 190


>gi|57169065|ref|ZP_00368192.1| helicase, putative [Campylobacter coli RM2228]
 gi|57019523|gb|EAL56214.1| helicase, putative [Campylobacter coli RM2228]
          Length = 920

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A  + +L LT TK A+ EM  R++E        S +
Sbjct: 9   LEASAGSGKTFALSVRFVALILQGAKINEILALTFTKKASNEMKKRIIETFLNLEKESKK 68

Query: 96  ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               E+ ++ G + ++     D  K   L          LK+ T  +F   I++ F L  
Sbjct: 69  SECKELCELLGCEEDELILLRDKKKQEFL-------RQELKISTFDSFFSRILRAFALNL 121

Query: 152 NITSHFAIADEE 163
            ++S F  ++E+
Sbjct: 122 GLSSDFDTSEEK 133


>gi|330505760|ref|YP_004382629.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01]
 gi|328920046|gb|AEB60877.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01]
          Length = 727

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 49/163 (30%)

Query: 19  QTKSEQLLAS----------DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           Q   E LLAS           P     V A AGSGKT +LV R+  L+ A  A P ++L 
Sbjct: 2   QNDPELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAIGASPHSILS 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                         
Sbjct: 62  VTFTNKAAAEMRHRIEQMLG--------------------------------------HN 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           P G+ V T H     +++    EA +  +F I D +  ++LI+
Sbjct: 84  PAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDSDDQQRLIK 126


>gi|322515360|ref|ZP_08068354.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus
           ureae ATCC 25976]
 gi|322118587|gb|EFX90815.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus
           ureae ATCC 25976]
          Length = 732

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+AN+   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121


>gi|313884107|ref|ZP_07817873.1| ATP-dependent nuclease subunit A [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620554|gb|EFR31977.1| ATP-dependent nuclease subunit A [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 1321

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 23/153 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           V+A+AGSGKT +L++R++  L+   +     L +T T+AAA EM  R+   + TA +   
Sbjct: 30  VAASAGSGKTAVLIERIMTKLIYQGYSIEDFLVVTFTEAAAREMKERMSARLKTAVNETL 89

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D +      + QG       ++K   LL           ++T+H+FC  +++ F    + 
Sbjct: 90  DPV------EQQG-------LTKQNQLL-------SQANIRTLHSFCLRVVETFYYLTDF 129

Query: 154 TSHFA-IADEEQSKKLIEEAKKSTLASIMLDNN 185
            ++F  + DE +   L +EA ++ +  IM+ N 
Sbjct: 130 EANFQLVTDETRLLLLYQEAWQNLIEKIMVPNG 162


>gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
           FRC41]
          Length = 846

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 53/207 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+     +Q  A + + S   + A AGSGKT +L +R+  L+ +    P  +L +T T 
Sbjct: 61  DLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTN 120

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV       +HL   I S                                + 
Sbjct: 121 KAAAEMRERV-------AHLVGPIASR-------------------------------MW 142

Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V T H+ C  I+ +Q  L A + S+F I D + SK+L        LA I  D N ++KK 
Sbjct: 143 VSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKF 194

Query: 192 FYEILEISNDEDIETLISDIISNRTAL 218
              +L       I  L +++IS  TA+
Sbjct: 195 TPRLL----GAGISNLKNELISPATAV 217


>gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           C231]
 gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
          Length = 846

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 53/207 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+     +Q  A + + S   + A AGSGKT +L +R+  L+ +    P  +L +T T 
Sbjct: 61  DLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTN 120

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV       +HL   I S                                + 
Sbjct: 121 KAAAEMRERV-------AHLVGPIASR-------------------------------MW 142

Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V T H+ C  I+ +Q  L A + S+F I D + SK+L        LA I  D N ++KK 
Sbjct: 143 VSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKF 194

Query: 192 FYEILEISNDEDIETLISDIISNRTAL 218
              +L       I  L +++IS  TA+
Sbjct: 195 TPRLL----GAGISNLKNELISPATAV 217


>gi|220929196|ref|YP_002506105.1| recombination helicase AddA [Clostridium cellulolyticum H10]
 gi|251764516|sp|B8I2Y2|ADDA_CLOCE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|219999524|gb|ACL76125.1| recombination helicase AddA [Clostridium cellulolyticum H10]
          Length = 1248

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 32/200 (16%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LV+R++R +    +P    +LL +T T AAA EM  R+   I           S  
Sbjct: 31  KTAVLVERIIRKITDKENPVDIDSLLVVTFTNAAATEMRERIGAAI-----------SDT 79

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           I K QG K      + +R L++          + TIH+FC  +++       I   F I 
Sbjct: 80  IEKNQGSK------NISRQLILL-----NKASITTIHSFCLEVIRSNFQSIEIDPGFKIL 128

Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220
           DE ++  L  E        I  D  E   + F+E+LE       +  I D++     + +
Sbjct: 129 DETEATLLKSETLSDLFEEIYEDAEE--NEDFFELLESYGGNRDDLKIQDMV-----MSI 181

Query: 221 IFFFFSYLWRRKIIEKSLWS 240
             F  SY W  K +E+ + S
Sbjct: 182 YSFVQSYPWPEKWLEQQIES 201


>gi|197116744|ref|YP_002137171.1| exodeoxyribonuclease V subunit beta [Geobacter bemidjiensis Bem]
 gi|197086104|gb|ACH37375.1| exodeoxyribonuclease V, beta subunit [Geobacter bemidjiensis Bem]
          Length = 1130

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 21/148 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH--- 91
           + A+AG+GKT  +    LRL+L      S +L +T T+AA  E+  R+   +    +   
Sbjct: 17  IEASAGTGKTFTIAGVYLRLVLEQKFDVSRILVVTFTEAATKELKERIRNKLKEAENGFL 76

Query: 92  --LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              +D+ L      I+G   +  D S+AR LL + + +     + TIH FC+ ++Q  P 
Sbjct: 77  TGATDDFL------IEGLLKSTQDHSEARRLLSSAIRSFDEAAIFTIHGFCQRMLQDNPF 130

Query: 150 EANITSHFAIADEE----QSKKLIEEAK 173
           E+      ++ D E    Q K L+E A+
Sbjct: 131 ESG-----SLCDTELVTDQGKILMEIAQ 153


>gi|295702782|ref|YP_003595857.1| ATP-dependent nuclease subunit A [Bacillus megaterium DSM 319]
 gi|294800441|gb|ADF37507.1| ATP-dependent nuclease, subunit A [Bacillus megaterium DSM 319]
          Length = 1245

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 25/133 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++ +     P     LL  T T A+AAEM +R+          
Sbjct: 31  VAAAAGSGKTAVLVERIIKKITMGDEPIDVDRLLVATFTNASAAEMRNRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E L  E+ K      N S +   R L   +L       + T+H+FC  +++ +    +
Sbjct: 81  -GEALEKELKK------NPSSLHLRRQL--NLLNRAS---ISTLHSFCLEVIRTYYYLID 128

Query: 153 ITSHFAIADEEQS 165
           +   F IAD+ ++
Sbjct: 129 VDPGFRIADDTEA 141


>gi|307257392|ref|ZP_07539162.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864242|gb|EFM96155.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 732

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+AN+   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121


>gi|257469635|ref|ZP_05633727.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 1023

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AG+GKT+ L    +  L        +L +T TK A AE+  R+L+ +     L + 
Sbjct: 7   LKASAGTGKTYRLSLEYVGALCRGIDFKDILVMTFTKKATAEIKERILKFL---KELEEN 63

Query: 96  ILSAEITKIQGKK--PN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEA 151
               E  K   KK  P+ + +  K   +   +++    LKV TI AF   I ++      
Sbjct: 64  TKDGESIKENLKKIYPDMEFNHEKISSIYRDLIQNRDKLKVYTIDAFTNLIFKKAIAPYL 123

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLI 208
            I S+  I D+E  K LI+  +K      + DN ++  +AF   LE ++++D+E   TLI
Sbjct: 124 KIYSYEIIDDDENRKILIKTFQK------IFDNKDDF-RAFKGFLEDNSEKDMENYLTLI 176

Query: 209 SDIISNR 215
            ++++ R
Sbjct: 177 KNLLNER 183


>gi|70733445|ref|YP_263220.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf-5]
 gi|68347744|gb|AAY95350.1| DNA helicase II [Pseudomonas fluorescens Pf-5]
          Length = 727

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLLGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P G+ V T H     +++    EA ++
Sbjct: 83  --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEAGLS 110

Query: 155 SHFAIADEEQSKKLIE 170
             F I D +  ++L++
Sbjct: 111 QTFQILDSDDQQRLVK 126


>gi|294497408|ref|YP_003561108.1| ATP-dependent nuclease subunit A [Bacillus megaterium QM B1551]
 gi|294347345|gb|ADE67674.1| ATP-dependent nuclease, subunit A [Bacillus megaterium QM B1551]
          Length = 1245

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 25/133 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R+++ +     P     LL  T T A+AAEM +R+          
Sbjct: 31  VAAAAGSGKTAVLVERIIKKITMGDEPIDVDRLLVATFTNASAAEMRNRI---------- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E L  E+ K      N S +   R L   +L       + T+H+FC  +++ +    +
Sbjct: 81  -GEALEKELKK------NPSSLHLRRQL--NLLNRAS---ISTLHSFCLEVIRTYYYLID 128

Query: 153 ITSHFAIADEEQS 165
           +   F IAD+ ++
Sbjct: 129 VDPGFRIADDTEA 141


>gi|330812675|ref|YP_004357137.1| putative DNA helicase II [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380783|gb|AEA72133.1| putative DNA helicase II [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 727

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P G+ V T H     +++    EA ++
Sbjct: 83  --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEAGLS 110

Query: 155 SHFAIADEEQSKKLIE 170
             F I D +  ++L++
Sbjct: 111 QTFQILDSDDQQRLVK 126


>gi|258512041|ref|YP_003185475.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478767|gb|ACV59086.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 1240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           VSA AGSGKT +L +R+  L  A   P      LL +T T+AAA EM  R++  +     
Sbjct: 22  VSAGAGSGKTAVLAERIASL--AEGDPKFRMDQLLVMTFTEAAAEEMRARIVRRLAE--- 76

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                  A   +  G+       S+  H            ++ TIH+FC ++++   +EA
Sbjct: 77  ------RAAEAEQAGESVKARRFSRLAH-------RANDAQISTIHSFCLSLLRDHAVEA 123

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTL 177
            +   F +   E+   L+  A ++TL
Sbjct: 124 GLVPGFRVLSGEEDAVLLRGAAQATL 149


>gi|190150646|ref|YP_001969171.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307263993|ref|ZP_07545594.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189915777|gb|ACE62029.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306870682|gb|EFN02425.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 732

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+AN+   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121


>gi|317501978|ref|ZP_07960162.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896658|gb|EFV18745.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1197

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ +Q +     R+  VSA AGSGKT +LV+R+++ +     P     LL +T T+A
Sbjct: 3   VKWTEQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ E                I K   + P    + +   L+ +         +
Sbjct: 63  AAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSA-------PI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC +++++     ++   F I ++ + K L ++     L        EE      
Sbjct: 101 TTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFTE 160

Query: 194 EILEISNDEDIETLI 208
                 ND  IE +I
Sbjct: 161 RFGTGKNDRKIEGII 175


>gi|331088205|ref|ZP_08337124.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330408449|gb|EGG87915.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1197

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ +Q +     R+  VSA AGSGKT +LV+R+++ +     P     LL +T T+A
Sbjct: 3   VKWTEQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ E                I K   + P    + +   L+ +         +
Sbjct: 63  AAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSA-------PI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC +++++     ++   F I ++ + K L ++     L        EE      
Sbjct: 101 TTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFTE 160

Query: 194 EILEISNDEDIETLI 208
                 ND  IE +I
Sbjct: 161 RFGTGKNDRKIEGII 175


>gi|255657915|ref|ZP_05403324.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544]
 gi|260850107|gb|EEX70114.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544]
          Length = 1283

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 27/175 (15%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           R+  V+A AGSGKT +LV R++  LLA       +L +T T AAA EM  R         
Sbjct: 16  RNILVAAAAGSGKTRVLVDRIIAQLLARECSVDEMLVVTFTNAAATEMRER--------- 66

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                     I K   KK  ++D  +    L   +    G  + T HAFC+ +++Q    
Sbjct: 67  ----------IDKALQKKLLETDDRETAAWLERQIVLLSGASICTFHAFCQKVIRQNIDA 116

Query: 151 ANITSHFAIADEEQ----SKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++   F +A +++     + ++EE  +S   S  +  +E  K  + + LE  +D
Sbjct: 117 IDVDPQFRLASDQEMVLMRRDVLEELLES---SYKMPEDEAGKAKWQDFLEFVDD 168


>gi|328948419|ref|YP_004365756.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328448743|gb|AEB14459.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 675

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 38/137 (27%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT ++  R+  +L      S +L LT T  AA EM  R+ E+            
Sbjct: 30  AGAGSGKTRVITYRIANMLEKGIPQSQILALTFTNKAAKEMEERIKELT----------- 78

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                   GKK N                    L V T HAF   I++Q   +     +F
Sbjct: 79  --------GKKLN-------------------NLTVSTFHAFGVRILRQEITKLGYRENF 111

Query: 158 AIADEEQSKKLIEEAKK 174
           +I DE   K LI+E+ +
Sbjct: 112 SIYDETDKKALIKESGR 128


>gi|321310796|ref|YP_004193125.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
          Langford 1]
 gi|319802640|emb|CBY93286.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
          Langford 1]
          Length = 639

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          P +   V A AG+GKT +L++R+LR +     PS +L +T T  +  E+SHR+
Sbjct: 14 PFKPTLVIAGAGTGKTTVLIERILRYIDEGIEPSRILAITFTNKSKDEISHRI 66


>gi|307261810|ref|ZP_07543476.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306868628|gb|EFN00439.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 732

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+AN+   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121


>gi|149191373|ref|ZP_01869625.1| DNA-dependent helicase II [Vibrio shilonii AK1]
 gi|148834790|gb|EDL51775.1| DNA-dependent helicase II [Vibrio shilonii AK1]
          Length = 723

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P     V A AGSGKT +LV R+  L+ + NA P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLEHMLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++   S                                       G+ 
Sbjct: 65  KAAAEMRGRIEELMMGSSS--------------------------------------GMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEDFQILDSDDQQRLLK 124


>gi|27383199|ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium japonicum USDA 110]
 gi|27356373|dbj|BAC53353.1| blr8088 [Bradyrhizobium japonicum USDA 110]
          Length = 1099

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           +D   +  V A AG+GKT +L  RV+ L+ +   P  ++ +T T+ AA E+ HR+     
Sbjct: 14  TDLDSTLLVEAGAGTGKTSLLAGRVVMLMASGTSPGAIVAITFTELAAGELRHRIS---- 69

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             ++L   +  A   +++   P+     + R L +   E    L   TIH++C  ++  +
Sbjct: 70  --TYLEALLGGAVPRELRLCLPDGPTPEQRRSLAVAA-ERLDELTCGTIHSYCHDLLLSY 126

Query: 148 PLEANITSHFAIADEEQSKKLIE 170
            +EA I     + D + +  L +
Sbjct: 127 SVEAGIDPGAEVLDADHADFLFD 149


>gi|86135193|ref|ZP_01053775.1| UvrD/REP helicase [Polaribacter sp. MED152]
 gi|85822056|gb|EAQ43203.1| UvrD/REP helicase [Polaribacter sp. MED152]
          Length = 1047

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 14/168 (8%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMS 79
           ++L+   P      +A+AGSGKT  LV+  L++LL+     T   +L +T T  AA EM 
Sbjct: 3   KKLVVQKPEIFEVYNASAGSGKTFTLVKEYLKVLLSADDIFTFQKILAITFTNKAAGEMK 62

Query: 80  HRVLEIITAWSHLSDE----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            RVL  + +++   +     I+S EI         ++   +++ ++  IL+      + T
Sbjct: 63  ERVLSNLESFAEGEENDLFTIISNEIA-----VDKETIQVRSKKIIDVILQNYSAFSITT 117

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           I +F   I++ F  +  ++ +F +  E  +  L+ EA    ++ I  D
Sbjct: 118 IDSFTHKIIKSFAYDLGLSLNFEV--EMDAVSLLNEAVDVLISKIGTD 163


>gi|313678484|ref|YP_004056224.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45]
 gi|312950464|gb|ADR25059.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45]
          Length = 734

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 41/160 (25%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +++ ++E L   D P R   + A AGSGKT +L +++  L+ +    P+ +L +T T  A
Sbjct: 18  LNEEQTEALYYFDGPLR---IIAGAGSGKTRVLTRKIAYLINVLGISPNHILAVTFTNKA 74

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEMS RV +                       K NK                 G  ++ 
Sbjct: 75  AAEMSERVKQYTNT-------------------KFNK-----------------GTAEIS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+ C  I+++     N+ + F I D+   KK++++  K
Sbjct: 99  TFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDLYK 138


>gi|21223175|ref|NP_628954.1| ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)]
 gi|8218198|emb|CAB92660.1| putative ATP-dependent DNA helicase II [Streptomyces coelicolor
           A3(2)]
          Length = 831

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   N HP  +L +T T  AA EM  RV +++        
Sbjct: 90  IVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNKAAGEMKERVEQLV-------- 141

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 172 SSFSIYDAADSKRLM 186


>gi|89894431|ref|YP_517918.1| hypothetical protein DSY1685 [Desulfitobacterium hafniense Y51]
 gi|122483028|sp|Q24WW8|ADDA_DESHY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|89333879|dbj|BAE83474.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1392

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 31/195 (15%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSH 80
           Q  A D      V+A AGSGKT +LVQR+ + +            L +T TKAAAAEM  
Sbjct: 10  QQAAIDLKGQLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTFTKAAAAEMRE 69

Query: 81  RVLEIITAWSHLSDEIL--SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+ + +       DE L  +AE  +++     ++ + +A               + T+H+
Sbjct: 70  RIGKAL-------DEALFGAAEPAQVEHLLQQRALLYRA--------------SITTLHS 108

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE- 197
           FC  +++Q+     +   F +ADE ++  L    ++ TL  +      E   AF  +++ 
Sbjct: 109 FCMELIRQYFYLIELDPAFRVADEAEADLL----RQDTLEDLFEAYYGEETPAFQSLVDA 164

Query: 198 ISNDEDIETLISDII 212
              D D + L++ I+
Sbjct: 165 FGTDRDDQPLMASIL 179


>gi|219668857|ref|YP_002459292.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2]
 gi|251764522|sp|B8FXD7|ADDA_DESHD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|219539117|gb|ACL20856.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2]
          Length = 1392

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 31/195 (15%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSH 80
           Q  A D      V+A AGSGKT +LVQR+ + +            L +T TKAAAAEM  
Sbjct: 10  QQAAIDLKGQLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTFTKAAAAEMRE 69

Query: 81  RVLEIITAWSHLSDEIL--SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+ + +       DE L  +AE  +++     ++ + +A               + T+H+
Sbjct: 70  RIGKAL-------DEALFGAAEPAQVEHLLQQRALLYRA--------------SITTLHS 108

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE- 197
           FC  +++Q+     +   F +ADE ++  L    ++ TL  +      E   AF  +++ 
Sbjct: 109 FCMELIRQYFYLIELDPAFRVADEAEADLL----RQDTLEDLFEAYYGEETPAFQSLVDA 164

Query: 198 ISNDEDIETLISDII 212
              D D + L++ I+
Sbjct: 165 FGTDRDDQPLMASIL 179


>gi|256785725|ref|ZP_05524156.1| ATP-dependent DNA helicase II [Streptomyces lividans TK24]
 gi|289769617|ref|ZP_06528995.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24]
 gi|289699816|gb|EFD67245.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24]
          Length = 831

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   N HP  +L +T T  AA EM  RV +++        
Sbjct: 90  IVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNKAAGEMKERVEQLV-------- 141

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 172 SSFSIYDAADSKRLM 186


>gi|188591039|ref|YP_001795639.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
 gi|170937933|emb|CAP62917.1| putative ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG
          19424]
          Length = 702

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 31/49 (63%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT+ L  RV  L+L  A P  +L LT ++ AAAEM  RV  I+
Sbjct: 49 AGAGSGKTNTLAHRVAHLVLGGADPRRILLLTFSRRAAAEMGRRVERIV 97


>gi|218134063|ref|ZP_03462867.1| hypothetical protein BACPEC_01953 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991438|gb|EEC57444.1| hypothetical protein BACPEC_01953 [Bacteroides pectinophilus ATCC
           43243]
          Length = 163

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPST------LLCLTHTKAAAAEMSHRVLEI 85
           ++  VSA AGSGKT +LV+R++R++     P        L+ +T T AAAA+M  R   I
Sbjct: 6   KNILVSAAAGSGKTAVLVERIIRMI---TDPDNHVDIERLVVVTFTNAAAAQMRER---I 59

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
             A   + +E              N SD +  R L +  +      ++ TI +FC  I++
Sbjct: 60  GAALESMIEE--------------NPSDRNLQRQLAMIHMA-----QITTIDSFCLNILR 100

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
              +  +I   F IAD+ + + +  +     L       NE+  + +
Sbjct: 101 NNYMNLDIDPGFRIADQGELELIKADVMGELLEKYYAGGNEDFLRTY 147


>gi|269962274|ref|ZP_06176626.1| DNA helicase II [Vibrio harveyi 1DA3]
 gi|269832977|gb|EEZ87084.1| DNA helicase II [Vibrio harveyi 1DA3]
          Length = 724

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  + P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQSSPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ + GG+ 
Sbjct: 66  KAAAEMRGRIEEL--------------------------------------MMGSAGGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125


>gi|284052478|ref|ZP_06382688.1| ATP-dependent nuclease subunit A [Arthrospira platensis str.
           Paraca]
 gi|291571372|dbj|BAI93644.1| putative helicase [Arthrospira platensis NIES-39]
          Length = 1070

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 30/165 (18%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           +S T ++Q  A+ P +S  V+A AG+GKT++LV+R L  L      P  ++ +T T+ AA
Sbjct: 1   MSLTNAQQAAATSP-QSIMVTAGAGTGKTYMLVERYLYYLREKGLSPLEIVAVTFTEKAA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+                   ++++ + PN+ D          IL       + T
Sbjct: 60  QELRSRIR------------------SQVRQQLPNRPD----------ILAELEAAPIST 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           IHA    I ++ P  A + + F I +  + K  + E  ++ L+ +
Sbjct: 92  IHALASRICREHPQAAKVPADFQILEYLEGKIWLYEGLETALSKL 136


>gi|67624459|ref|XP_668512.1| helicase  [Cryptosporidium hominis TU502]
 gi|54659721|gb|EAL38286.1| helicase-like protein nhl [Cryptosporidium hominis]
          Length = 916

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 14/140 (10%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           S  + A  G+GKT  L  R++R LL+   P  +L LT T+ AA E+  RV  I+ + S  
Sbjct: 49  SLLIVAGPGTGKTATLTSRIVRFLLSGYSP--ILALTFTRKAANELKSRV-SIVYSSSSK 105

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                S +I         K+D+   + L    + TP  + + TIH+FC  +++++     
Sbjct: 106 IIYSKSKQI---------KNDLRNEKSL-SDFVPTPE-IFIGTIHSFCWKLLKEYGSFIG 154

Query: 153 ITSHFAIADEEQSKKLIEEA 172
           +    AI D+E + KL++  
Sbjct: 155 LPKDIAIIDKELAIKLLKSC 174


>gi|306821434|ref|ZP_07455038.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
 gi|304550509|gb|EFM38496.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
          Length = 1587

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 21   KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
            K ++++  D ++   V A AGSGKT +LV ++  LLL  +     LL LT ++AAA E  
Sbjct: 1035 KQKEIINDDNSQFITVLAGAGSGKTKVLVHKLASLLLMEDVKAEQLLMLTFSRAAATEFK 1094

Query: 80   HRVLEIITAWSHLSD 94
             R++E+I   ++  D
Sbjct: 1095 KRLIELIGDGAYFVD 1109


>gi|327540076|gb|EGF26671.1| ATP-dependent DNA helicase, UvrD/REP family [Rhodopirellula baltica
           WH47]
          Length = 621

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            + +D + ++ +    A +PT    V A+AG+GKT+ L  R+L++LL  A P T+L  T 
Sbjct: 41  PDELDFVVESPTTLREAFEPT---LVRASAGTGKTYQLTARLLKILLTGAPPETILATTF 97

Query: 71  TKAAAAEMSHRVL 83
           T+ AA E+  RVL
Sbjct: 98  TRKAAGEILERVL 110


>gi|284006602|emb|CBA71863.1| DNA helicase II / ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 723

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 43/155 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A AGSGKT +LV R+  LL  +   P +++ +T T  AAAEM HR+  ++  
Sbjct: 24  PRTNMLILAGAGSGKTRVLVHRIAWLLAVDKVSPFSIMAVTFTNKAAAEMRHRINALLG- 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
               SD+                                 GG+ V T H     +++   
Sbjct: 83  ----SDQ---------------------------------GGMWVGTFHGLAHRLLRAHY 105

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           L+AN+   F I D +   +L+    +  + +I LD
Sbjct: 106 LDANLVQDFQILDSDDQYRLL----RRIIKAINLD 136


>gi|261250055|ref|ZP_05942632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891]
 gi|260939559|gb|EEX95544.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891]
          Length = 723

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +A V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENALVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ EI                                      ++ +  G+ 
Sbjct: 65  KAAAEMRGRIEEI--------------------------------------MMGSASGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  I++   L+A +   F I D +   +L+
Sbjct: 87  NGTFHGICHRILRAHYLDATLPEDFQIIDTDDQVRLL 123


>gi|261493834|ref|ZP_05990348.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261310537|gb|EEY11726.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 1174

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 17/158 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEII 86
            +S  + A+AG+GKT  +    LRLLL    +P T   +L +T TKAA  E+ +R+ + I
Sbjct: 12  NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71

Query: 87  TAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ----------T 135
              +  L D+    E+   +  + N   +++   L+  I E    L +           T
Sbjct: 72  QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQS--KKLIEE 171
           IH FC+ ++ QF  E+ +     +   +    KKL EE
Sbjct: 132 IHGFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEE 169


>gi|315503768|ref|YP_004082655.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410387|gb|ADU08504.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1134

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 34/178 (19%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLL 66
           E +  + L + T+ +  + + P     V A AGSGKT  +  RV+  L+AN++  P  +L
Sbjct: 29  ELARLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVM-WLVANSYVRPEHIL 87

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+ AA E++HRV   +       D+++       QG+ P+   ++           
Sbjct: 88  GLTFTRKAAGELAHRVRTRL-------DQLIRR--LGRQGRDPHDDPLA----------- 127

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
             G   V T H++   I         +T H   A  E + +L+ EA +  L  +++ N
Sbjct: 128 --GEPTVSTYHSYAGRI---------VTEHGLRAGYEPTTRLLTEASRWQLVDLLVRN 174


>gi|302869750|ref|YP_003838387.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572609|gb|ADL48811.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1134

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 34/178 (19%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLL 66
           E +  + L + T+ +  + + P     V A AGSGKT  +  RV+  L+AN++  P  +L
Sbjct: 29  ELARLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVM-WLVANSYVRPEHIL 87

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+ AA E++HRV   +       D+++       QG+ P+   ++           
Sbjct: 88  GLTFTRKAAGELAHRVRTRL-------DQLIRR--LGRQGRDPHDDPLA----------- 127

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
             G   V T H++   I         +T H   A  E + +L+ EA +  L  +++ N
Sbjct: 128 --GEPTVSTYHSYAGRI---------VTEHGLRAGYEPTTRLLTEASRWQLVDLLVRN 174


>gi|303229716|ref|ZP_07316502.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515613|gb|EFL57569.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1273

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 28/179 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91
           V+A AGSGKT +LV+R++  L    +P     L+ +T TKAAAAEMS R+ + +  A   
Sbjct: 28  VAAAAGSGKTAVLVERIITRLKDMENPLSVQELMVVTFTKAAAAEMSARIGVALAKAMES 87

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D+ L A + +     P+                      + T+H+FC+ +++ +  + 
Sbjct: 88  TDDKSLQARLERQLNLLPSA--------------------HISTLHSFCQWVIRSYFYKL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
           +I     I +E +   L    K+  L +++ +  E  +   +++ +  +D+  +  + D
Sbjct: 128 DIPPTARIGNEAEMALL----KQEVLENLLKEAYEHNEYGIFDLSDFFSDDKSDAGLQD 182


>gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           1002]
          Length = 785

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 52/185 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ +    P  +L +T T  AAAEM  RV       +HL  
Sbjct: 22  IVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNKAAAEMRERV-------AHLVG 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-QQFPLEANI 153
            I S                                + V T H+ C  I+ +Q  L A +
Sbjct: 75  PIASR-------------------------------MWVSTFHSTCVRILREQAQLVAGL 103

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            S+F I D + SK+L        LA I  D N ++KK    +L       I  L +++IS
Sbjct: 104 NSNFTIYDSDDSKRL--------LAMISKDMNLDIKKFTPRLL----GAGISNLKNELIS 151

Query: 214 NRTAL 218
             TA+
Sbjct: 152 PATAV 156


>gi|260774493|ref|ZP_05883407.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP
           69.14]
 gi|260610620|gb|EEX35825.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP
           69.14]
          Length = 718

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 2   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLISVEQASPFSVMSVTFTN 59

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                  +QG                    +  G+ 
Sbjct: 60  KAAAEMRGRIEEL------------------MQG--------------------SASGMW 81

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  I++   L+AN+   F I D E   +L+
Sbjct: 82  NGTFHGICHRILRAHYLDANLPEDFQILDSEDQLRLL 118


>gi|219871258|ref|YP_002475633.1| DNA-dependent helicase II [Haemophilus parasuis SH0165]
 gi|219691462|gb|ACL32685.1| DNA-dependent helicase II [Haemophilus parasuis SH0165]
          Length = 727

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 37/158 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENIAESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +   S  SD                        H L        G+ 
Sbjct: 65  KAAAEMRHRIEYTL---SQSSD------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+    +++   L+AN+   F I D E  ++LI+
Sbjct: 91  VGTFHSIANRLLRSHYLDANLPQDFQIMDTEDQQRLIK 128


>gi|91974519|ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91680975|gb|ABE37277.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
          Length = 1115

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT ++  RV  L      P  +  +T T+ AA+E+  R+ +  TA S L D 
Sbjct: 23  VEAGAGSGKTSVMAGRVAVLFGKGVEPKNIAAITFTELAASELRLRIEKFTTALS-LGD- 80

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +  ++T  Q       +  KA   L    ++   L   TIH F +++++ +P EA I  
Sbjct: 81  -VPPDLT--QAFPEGVPEAEKAN--LYRACQSFDQLACTTIHGFAQSLIKPYPAEAGIDP 135

Query: 156 HFAIADEEQSK 166
              I D ++++
Sbjct: 136 GADIVDPDEAE 146


>gi|254362549|ref|ZP_04978650.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213]
 gi|153094150|gb|EDN75046.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213]
          Length = 1174

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 17/158 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEII 86
            +S  + A+AG+GKT  +    LRLLL    +P T   +L +T TKAA  E+ +R+ + I
Sbjct: 12  NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71

Query: 87  TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ----------T 135
              +  L D+    E+   +  + N   +++   L+  I E    L +           T
Sbjct: 72  QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQS--KKLIEE 171
           IH FC+ ++ QF  E+ +     +   +    KKL EE
Sbjct: 132 IHGFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEE 169


>gi|16801431|ref|NP_471699.1| hypothetical protein lin2368 [Listeria innocua Clip11262]
 gi|81595220|sp|Q929A9|ADDA_LISIN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|16414891|emb|CAC97595.1| lin2368 [Listeria innocua Clip11262]
          Length = 1235

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 34/182 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+    N +   LL +T T  +AAEM +R+ +        
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLINETENLNVDELLIVTFTNVSAAEMKYRIGK-------- 82

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                S E   +Q   P    + K   LL           + T+H+FC  I+++   EA+
Sbjct: 83  -----SLEEALVQN--PESVHLKKQVALL-------NYASISTLHSFCLEIIRKHYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207
           I  +F + +  +S  + +E  +  L     ++NNE     F+ ++E      +D ++ TL
Sbjct: 129 IDPNFRLIEPIESSMIRDEVLEDLLEKEYSIENNE----GFFHLVESFTGDRSDAELHTL 184

Query: 208 IS 209
           IS
Sbjct: 185 IS 186


>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 855

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 44/138 (31%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           ++AG+GKT  L  R+  ++  N A    +LCLT T  A  EM  +++E +          
Sbjct: 25  SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153
                    GK+                     GLK  V+T H+FC + I ++     +I
Sbjct: 75  ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104

Query: 154 TSHFAIADEEQSKKLIEE 171
           +S F I DEE +K++I E
Sbjct: 105 SSDFTIYDEEDTKEIISE 122


>gi|261495059|ref|ZP_05991526.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309301|gb|EEY10537.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 1174

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 17/158 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEII 86
            +S  + A+AG+GKT  +    LRLLL    +P T   +L +T TKAA  E+ +R+ + I
Sbjct: 12  NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71

Query: 87  TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ----------T 135
              +  L D+    E+   +  + N   +++   L+  I E    L +           T
Sbjct: 72  QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQS--KKLIEE 171
           IH FC+ ++ QF  E+ +     +   +    KKL EE
Sbjct: 132 IHGFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEE 169


>gi|56419217|ref|YP_146535.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
           HTA426]
 gi|81558057|sp|Q5L263|ADDA_GEOKA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|56379059|dbj|BAD74967.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
           HTA426]
          Length = 1242

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 25/136 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ + A         LL +T T AAAAEM  R+      
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E L  E+     K+P+   + +   LL      P    + T+H+FC  +++++ 
Sbjct: 81  -----GEALEREL----AKRPHSLHLRRQLSLL------PRA-AISTLHSFCLDVIRKYY 124

Query: 149 LEANITSHFAIADEEQ 164
              ++   F IADE +
Sbjct: 125 YLLDLDPSFRIADETE 140


>gi|331702530|ref|YP_004399489.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129873|gb|AEB74426.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri
           NRRL B-30929]
          Length = 1252

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 27/186 (14%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEIIT 87
           P  +  VSA+AGSGKT +LV R++  ++ N H     LL +T T AAA EM  R+     
Sbjct: 17  PAGNVLVSASAGSGKTRVLVDRIID-MVKNQHVDIDQLLVVTFTNAAAKEMRQRL----- 70

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             + L +E   A            ++  K R  L+T ++      + T+ A+C+ ++ ++
Sbjct: 71  -QAALREEFNQA------------AEAEKGR--LLTQIQKVAVADITTMDAYCQKLVGRY 115

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIET 206
                I  +F I  ++  K+L+++     +   +  N+E+   +F  + E  SND   + 
Sbjct: 116 YYLLGIDPNFRILADDTEKQLLKDQVWGAVREDLYGNDED--GSFARLTENFSNDRSDDG 173

Query: 207 LISDII 212
           L +D+I
Sbjct: 174 L-ADLI 178


>gi|313675649|ref|YP_004053645.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126]
 gi|312942347|gb|ADR21537.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126]
          Length = 1084

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           ++AGSGKT  L +  L+L   N  H   +L +T T  A  EM  R+++ +  +S  +   
Sbjct: 12  SSAGSGKTFTLTREYLKLAFQNPDHFKKILAVTFTNKATQEMKERIIQNLFDFSRKTPSD 71

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           +  ++  I      +    K++ LL++IL       VQTI  F + +M+ F  E
Sbjct: 72  MGEQLKSILDLTDTEL-KEKSQKLLVSILHNYSRFSVQTIDRFFQNVMRSFARE 124


>gi|307332408|ref|ZP_07611476.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu
           4113]
 gi|306881942|gb|EFN13060.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu
           4113]
          Length = 824

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A   HP  +L +T T  AA EM  RV E++        
Sbjct: 93  IVAGAGSGKTRVLTHRIAYLLGARGTHPGQILAITFTNKAAGEMKERVEELV-------- 144

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 145 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKKLGFT 174

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 175 SSFSIYDAADSKRLM 189


>gi|300115039|ref|YP_003761614.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
 gi|299540976|gb|ADJ29293.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
          Length = 717

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 45/166 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
            K+++  A+ P     V A AGSGKT +LV R+  L+ +    P  LL +T T  AA EM
Sbjct: 11  NKAQREAAAAPPGHHLVLAGAGSGKTRVLVHRMAWLIRSQGIAPVNLLAVTFTNKAAGEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIH 137
             R+ E                                       +LETP GG+ V T H
Sbjct: 71  RGRIEE---------------------------------------LLETPAGGMWVGTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                +++    EA +   F I D E   +LI    +  L ++ LD
Sbjct: 92  GIAHRLLRAHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLD 133


>gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 872

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + + L+ ++   +  + A+AG+GKT+ L  R+  ++ +N A  S +LC+T T  A AEM
Sbjct: 4   NQEQALVVNELENNILLLASAGTGKTNTLSSRISNIIKSNKAKASEILCITFTNKACAEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +I+                                       E    + ++T H+
Sbjct: 64  RERIEKIVG--------------------------------------EEAKDITIRTFHS 85

Query: 139 FC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           FC + I        +I + F + DEE S+++I+E 
Sbjct: 86  FCYDLIKSDAKKRTDIFTDFIVFDEEDSREIIKEC 120


>gi|150024269|ref|YP_001295095.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770810|emb|CAL42275.1| Probable ATP-dependent DNA helicase, UvrD/REP family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1052

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 78/155 (50%), Gaps = 9/155 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEII 86
           P  S + +A+AGSGKT+ LV+  L+++L   H      +L +T T  A  EM  R+++ +
Sbjct: 4   PAFSIY-NASAGSGKTYTLVKEYLKIILKAKHNDAYKNILAITFTNKAVFEMKTRIIDSL 62

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +S  +    S ++    GK+ N +     +KA+ ++  I+       + TI  F   +
Sbjct: 63  FDFSKDNPTEKSIQLMNDLGKEINLNQSQIKTKAQSIIKNIIHNYAAFDISTIDKFTHKV 122

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           ++ F  +  +   F ++ +  ++ L++EA  + +A
Sbjct: 123 IRAFAFDLGLPITFDVSLD--TENLLQEAVDAIVA 155


>gi|57242577|ref|ZP_00370515.1| helicase, putative [Campylobacter upsaliensis RM3195]
 gi|57016862|gb|EAL53645.1| helicase, putative [Campylobacter upsaliensis RM3195]
          Length = 909

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A    +L +T TK A  EM  RV+E    +     E
Sbjct: 10  LEASAGSGKTFALSMRFVALILNGAKIDEILAITFTKKATNEMKKRVIENFLTFDKKEAE 69

Query: 96  ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             + E+ K+ GK   +     D  K   L          LK+ T  A    I++ F L  
Sbjct: 70  --TKELCKLLGKDKEELIRLRDAKKEEFL-------RKNLKIYTFDALFSQILRSFALNL 120

Query: 152 NITSHFAIADEEQS 165
            + S F   +  Q 
Sbjct: 121 GLMSDFESVENSQD 134


>gi|319891943|ref|YP_004148818.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161639|gb|ADV05182.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1214

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 28/170 (16%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L        LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDGIDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               A I +   + P+   +   R  +          ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---EARIQQAAIEDPSNQHLKNQRTKIHQA-------QISTLHSFCLRLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDED 203
            +F  A E ++  L+EE     +  +   + + L   F  + E IS D D
Sbjct: 126 PNFRTASEVENVLLLEE----VIDDVFEKHYDRLDPTFVTLTEHISTDRD 171


>gi|297201841|ref|ZP_06919238.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
 gi|197717318|gb|EDY61352.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
          Length = 826

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   N HP  +L +T T  AA EM  RV +++        
Sbjct: 89  IVAGAGSGKTRVLTHRIAHLLGERNVHPGQILAITFTNKAAGEMKERVEQLV-------- 140

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 141 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 170

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 171 SSFSIYDAADSKRLM 185


>gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_1322 [Methanocorpusculum labreanum Z]
 gi|124363681|gb|ABN07489.1| UvrD/REP helicase [Methanocorpusculum labreanum Z]
          Length = 1057

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 30/142 (21%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLL-----ANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           S  V+A AG+GKT +L +R +  L       +   S +L LT+T  AAAEM  ++     
Sbjct: 18  SVCVTAGAGTGKTFLLTKRYIAALTYRRETMHTGASDILALTYTDKAAAEMRTKI----- 72

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                       E+ K   + P           L  + E+     + T H FC +++++F
Sbjct: 73  ----------GRELKKAAEEDPE----------LEGVWESFSRCSISTFHGFCLSLLKEF 112

Query: 148 PLEANITSHFAIADEEQSKKLI 169
             EA + + F++ DE  + +L+
Sbjct: 113 AYEAGLDAGFSVMDELDTHELV 134


>gi|325479866|gb|EGC82951.1| putative ATP-dependent nuclease subunit A [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 1121

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 29/142 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +LV R++RL++ +    S  + +T T  A+ EM  R+       + L +
Sbjct: 23  VSAAAGSGKTSVLVTRIIRLVIDDKKDISKFIIVTFTNKASVEMKDRI------RAALEE 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK---VQTIHAFCEAIMQQ-FPLE 150
           E+         GK  + +D S        I E    LK   V+T+H+FC  ++++ F   
Sbjct: 77  EL---------GK--DGADYS-------FIKEQIKNLKYAQVKTLHSFCADMLRENFYYF 118

Query: 151 ANITSHFAIADEEQSKKLIEEA 172
            N++  F +  +  S  L+ EA
Sbjct: 119 DNLSPSFKVISDNTSTILMAEA 140


>gi|303250592|ref|ZP_07336789.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307252961|ref|ZP_07534849.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650580|gb|EFL80739.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306859599|gb|EFM91624.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 732

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+A++   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121


>gi|51893311|ref|YP_076002.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
           thermophilum IAM 14863]
 gi|81610460|sp|Q67MD5|ADDA_SYMTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|51857000|dbj|BAD41158.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
           thermophilum IAM 14863]
          Length = 1371

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 41/210 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R L+    P     LL +T T+AAA EM  R+          
Sbjct: 26  VAAAAGSGKTAVLVERIIRRLVDERDPLDVDQLLVVTFTEAAATEMRDRI---------- 75

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                 A +       P    + +   LL       G   + T+H+FC ++++Q+     
Sbjct: 76  -----GAALQAALAGNPENERLQRQLALL-------GRASISTLHSFCLSLVRQYFYRLG 123

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208
           +    ++  E ++  L  E      A      +EE    F+ +++      +DE +  L+
Sbjct: 124 LDPAVSVMGEHEALLLRHEVLDQLFARRF---DEEEDGPFHALVDRYGGGRDDEGLRNLV 180

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
             I  +  AL          W  + +E+SL
Sbjct: 181 LAIYDHMQALP---------WPDQWLEESL 201


>gi|302536344|ref|ZP_07288686.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
 gi|302445239|gb|EFL17055.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
          Length = 825

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A N HP  +L +T T  AA EM  RV  ++        
Sbjct: 86  IVAGAGSGKTRVLTHRIGHLLSARNVHPGQILAITFTNKAAGEMKERVEGLV-------- 137

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++       T
Sbjct: 138 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKRLGFT 167

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 168 SSFSIYDAADSKRLM 182


>gi|154249214|ref|YP_001410039.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
 gi|154153150|gb|ABS60382.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
          Length = 1130

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 98/214 (45%), Gaps = 27/214 (12%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQR---VLRLLLANAHPST---LLCLTHTKAAAAEM 78
           ++  +P  + ++SA+AG+GKT+ L      +L       +P     +L +T T  AA EM
Sbjct: 11  IVRENPNCNYFISASAGTGKTYTLTNYYMGILEYYEKENNPDIVDGILAVTFTNKAANEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++      + + ++I S+ ++ +   K   S+MS+A               + TI +
Sbjct: 71  KERIM------NKVREKITSSSVSNLAYWKRVYSNMSRA--------------VISTIDS 110

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  ++ +  + A +  +F I ++ +  K+I+ A +  +  I     E+L+     +L  
Sbjct: 111 FCRRVLIEQNIYAGVDPNFTIINDLKQLKIIDSASRQAM-EIAFKVYEDLEIPLSPMLSS 169

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232
              + IE  I ++   + ++  +F     +WR K
Sbjct: 170 ERRKRIEGYIKELKEIKDSIIDLFELVGDVWRVK 203


>gi|303253078|ref|ZP_07339228.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307248354|ref|ZP_07530377.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302648063|gb|EFL78269.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306855092|gb|EFM87272.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 732

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+A++   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121


>gi|254491461|ref|ZP_05104640.1| UvrD/REP helicase domain protein [Methylophaga thiooxidans DMS010]
 gi|224462939|gb|EEF79209.1| UvrD/REP helicase domain protein [Methylophaga thiooxydans DMS010]
          Length = 723

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           SE ++ +++ + E + A  P   A + A AGSGKT +LV R+  L+ A +  P+ +L +T
Sbjct: 4   SELLNDLNKPQREAVAA--PLGHARILAGAGSGKTRVLVHRIAWLIQAEDFSPANILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ +I+                                         PG
Sbjct: 62  FTNKAAAEMRGRIEDILGY--------------------------------------PPG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           G+ V T H     +++    +A++   F I D +   ++I+
Sbjct: 84  GMWVGTFHGLAHRLLRSHWKDADLPQSFQILDSDDQLRMIK 124


>gi|32473647|ref|NP_866641.1| helicase [Rhodopirellula baltica SH 1]
 gi|32444183|emb|CAD74180.1| probable helicase [Rhodopirellula baltica SH 1]
          Length = 924

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            + +D + ++ +    A +PT    V A+AG+GKT+ L  R+L++LL  A P T+L  T 
Sbjct: 41  PDELDFVVESPTTLREAFEPT---LVRASAGTGKTYQLTARLLKILLTGAPPETILATTF 97

Query: 71  TKAAAAEMSHRVL 83
           T+ AA E+  RVL
Sbjct: 98  TRKAAGEILERVL 110


>gi|297531123|ref|YP_003672398.1| recombination helicase AddA [Geobacillus sp. C56-T3]
 gi|297254375|gb|ADI27821.1| recombination helicase AddA [Geobacillus sp. C56-T3]
          Length = 1242

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 25/136 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ + A         LL +T T AAAAEM  R+      
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E L  E+     K+P+   + +   LL      P    + T+H+FC  +++++ 
Sbjct: 81  -----GEALEREL----AKRPHSLHLRRQLSLL------PRA-AISTLHSFCLDVIRKYY 124

Query: 149 LEANITSHFAIADEEQ 164
              ++   F IADE +
Sbjct: 125 YLLDLDPSFRIADETE 140


>gi|77164123|ref|YP_342648.1| DNA-dependent helicase II [Nitrosococcus oceani ATCC 19707]
 gi|254435365|ref|ZP_05048872.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76882437|gb|ABA57118.1| ATP-dependent DNA helicase UvrD [Nitrosococcus oceani ATCC 19707]
 gi|207088476|gb|EDZ65748.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 717

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 45/166 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
            K+++  A+ P     V A AGSGKT +LV R+  L+ +    P  LL +T T  AA EM
Sbjct: 11  NKAQREAAAAPPGHHLVLAGAGSGKTRVLVHRMAWLIRSQGIAPVNLLAVTFTNKAAGEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIH 137
             R+ E                                       +LETP GG+ V T H
Sbjct: 71  RGRIEE---------------------------------------LLETPVGGMWVGTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                +++    EA +   F I D E   +LI    +  L ++ LD
Sbjct: 92  GIAHRLLRAHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLD 133


>gi|323464966|gb|ADX77119.1| exonuclease RexA [Staphylococcus pseudintermedius ED99]
          Length = 1214

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 28/170 (16%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L        LL +T T  +A EM HRV            
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDGIDVDRLLVVTFTNLSAREMKHRV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               A I +   + P+   +   R  +          ++ T+H+FC  ++QQ     +I 
Sbjct: 76  ---EARIQQAAIEDPSNQHLKNQRTKIHQA-------QISTLHSFCLRLIQQHYDVLDID 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDED 203
            +F  A E ++  L+EE     +  +   + + L   F  + E IS D D
Sbjct: 126 PNFRTASEVENVLLLEE----VIDDVFEKHYDRLDPTFVTLTEHISTDRD 171


>gi|165976747|ref|YP_001652340.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165876848|gb|ABY69896.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 732

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+A++   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121


>gi|28572402|ref|NP_789182.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27]
 gi|28410533|emb|CAD66919.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei
           TW08/27]
          Length = 973

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           ++L + T+ ++ +   P  +A V A AGSGKT  LV R+L L+ +    P +++ LT T+
Sbjct: 15  LNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLVLRLLWLIASGKLKPESIMGLTFTR 74

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEI 101
            AA E++ R+ + +   +  + ++LS EI
Sbjct: 75  KAAGELASRLQKSLAILNSYTGDVLSPEI 103


>gi|293400338|ref|ZP_06644484.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306738|gb|EFE47981.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 1081

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 22/118 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-LEIITAW 89
           ++  VSA+AGSGKT +L+ R++ L++ +  P   +L +T T+AAA+EM  R+   +  A+
Sbjct: 17  KNIMVSASAGSGKTTVLIARLMDLVVKDRVPIDAILAMTFTEAAASEMKKRLAASLQKAY 76

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               D    A IT+                  +T ++T     + TIH+FC +I+Q++
Sbjct: 77  EETKDPEERAYITR-----------------QLTSIQTA---HISTIHSFCLSILQEY 114


>gi|238897902|ref|YP_002923581.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465659|gb|ACQ67433.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 731

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  LL + +  P ++L +T T  AAAEM HRV            
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLLSVEHVSPYSILSVTFTNKAAAEMRHRV------------ 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
              SA +  +Q                        G+   T H     +++   LEAN+ 
Sbjct: 75  ---SALMGSMQ-----------------------DGMWTGTFHGLAHRLLRMHYLEANLP 108

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
             F I D +   +L+++  KS
Sbjct: 109 KDFQIIDNDDQLRLLKKIIKS 129


>gi|238060999|ref|ZP_04605708.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149]
 gi|237882810|gb|EEP71638.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149]
          Length = 799

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A + HP  ++ +T T  AA EM  RV +++   + L  
Sbjct: 56  IVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVTQLVGPRARL-- 113

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I++     A + 
Sbjct: 114 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 137

Query: 155 SHFAIADEEQSKKLIE 170
           S F+I D + S++L++
Sbjct: 138 SSFSIYDADDSRRLMQ 153


>gi|307250580|ref|ZP_07532522.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306857396|gb|EFM89510.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 699

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+A++   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121


>gi|28493486|ref|NP_787647.1| DNA helicase II [Tropheryma whipplei str. Twist]
 gi|28476528|gb|AAO44616.1| putative DNA helicase II [Tropheryma whipplei str. Twist]
          Length = 973

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           ++L + T+ ++ +   P  +A V A AGSGKT  LV R+L L+ +    P +++ LT T+
Sbjct: 15  LNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLVLRLLWLIASGKLKPESIMGLTFTR 74

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEI 101
            AA E++ R+ + +   +  + ++LS EI
Sbjct: 75  KAAGELASRLQKSLAILNSYTGDVLSPEI 103


>gi|93005845|ref|YP_580282.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
 gi|92393523|gb|ABE74798.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
          Length = 733

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 21/203 (10%)

Query: 14  IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D  S+  + QLLA+        V A AGSGKT  L  R   L+     P  +L LT T+
Sbjct: 58  VDYASELNANQLLAATTIEGKVLVIAGAGSGKTKTLTYRTSYLIENGVSPKEILLLTFTR 117

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R   ++ +    +   L+ ++  ++ K P    ++           T G   
Sbjct: 118 KAANEIKGRARALLASTPSFAQR-LNEDL--VEDKLPKNKALNDI---------TSG--- 162

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKA 191
             T H+FC  +++Q+     I   F I D   S+  I+   K       + N     KK 
Sbjct: 163 --TFHSFCNMLLRQYSGLLGINPRFTILDTGDSEDAIDLIHKEKKYPTKITNQAFPRKKT 220

Query: 192 FYEILEISNDEDIETLISDIISN 214
              I   S +  I   I D+I N
Sbjct: 221 LQNIFSTSRNRRIH--IRDLIEN 241


>gi|71279005|ref|YP_266848.1| DNA-dependent helicase II [Colwellia psychrerythraea 34H]
 gi|71144745|gb|AAZ25218.1| DNA helicase II [Colwellia psychrerythraea 34H]
          Length = 724

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 45/195 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
           SE +D ++  + + + A  P ++  + A AGSGKT +LVQR+  L+      S ++L +T
Sbjct: 4   SELLDSLNDKQRDVVAA--PKQNMLILAGAGSGKTRVLVQRIAWLMQVEGISSHSILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV ++    +H                                      
Sbjct: 62  FTNKAAAEMRARVEQVTNGNTH-------------------------------------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+ + T H     +++    EAN+   F + D +   +LI    K  + S+ LD  +   
Sbjct: 84  GMWIGTFHGLAHRLLRMHFQEANLPQSFQVLDSDDQLRLI----KRIVRSLELDEKKWPP 139

Query: 190 KAFYEILEISNDEDI 204
           K F   +    DE +
Sbjct: 140 KQFVWYINGKKDEGL 154


>gi|260887200|ref|ZP_05898463.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185]
 gi|330839034|ref|YP_004413614.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185]
 gi|260863262|gb|EEX77762.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185]
 gi|329746798|gb|AEC00155.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185]
          Length = 1251

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 23/138 (16%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L        LL +T T AAAAEM  R+           +
Sbjct: 24  VAAAAGSGKTSVLVERIIRRILQGETDVDRLLVVTFTNAAAAEMRERI-----------E 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L+ EI K             A   L   L       + T+HAFC+ ++++     ++ 
Sbjct: 73  AALAQEIAK-----------GTASPKLERQLALLSNASISTLHAFCQNVIRRNFSVIDLD 121

Query: 155 SHFAIADEEQSKKLIEEA 172
             F +A+E++ + L + A
Sbjct: 122 PKFRLANEQERRLLQQNA 139


>gi|261418926|ref|YP_003252608.1| recombination helicase AddA [Geobacillus sp. Y412MC61]
 gi|319765743|ref|YP_004131244.1| recombination helicase AddA [Geobacillus sp. Y412MC52]
 gi|261375383|gb|ACX78126.1| recombination helicase AddA [Geobacillus sp. Y412MC61]
 gi|317110609|gb|ADU93101.1| recombination helicase AddA [Geobacillus sp. Y412MC52]
          Length = 1242

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 25/136 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ + A         LL +T T AAAAEM  R+      
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E L  E+     K+P+   + +   LL      P    + T+H+FC  +++++ 
Sbjct: 81  -----GEALEREL----AKRPHSLHLRRQLSLL------PRA-AISTLHSFCLDVIRKYY 124

Query: 149 LEANITSHFAIADEEQ 164
              ++   F IADE +
Sbjct: 125 YLLDLDPSFRIADETE 140


>gi|13476580|ref|NP_108150.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
 gi|14027342|dbj|BAB53611.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
          Length = 697

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 29/138 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT+ L  RV  L++  A P  +L +T ++ AA+EM+ RV  I       + E
Sbjct: 44  VIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRAASEMAKRVERI-------AGE 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L  +                    +IT   T  G    T H     +++ + LE  +  
Sbjct: 97  VLGRDAA------------------VITDALTWAG----TFHGIGARLLRDYALEIGLDP 134

Query: 156 HFAIADEEQSKKLIEEAK 173
            F I D E S  L+  A+
Sbjct: 135 AFTIHDREDSADLMNLAR 152


>gi|159039658|ref|YP_001538911.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918493|gb|ABV99920.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 1162

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLL 66
           E ++ + L + T+ +  + + P     V A AGSGKT  +  RV+  L+AN+  HP  +L
Sbjct: 27  ELAKLLRLPAPTREQAAVIAAPVEPLLVVAGAGSGKTETMAARVV-WLVANSYVHPEQVL 85

Query: 67  CLTHTKAAAAEMSHRV 82
            LT T+ AA E++HRV
Sbjct: 86  GLTFTRKAAGELAHRV 101


>gi|296121114|ref|YP_003628892.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296013454|gb|ADG66693.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 845

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 40/139 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A  GSGKT ++ +R+ RL+    HP+ +L +T T  AA EM+ RV        HL   
Sbjct: 25  VLAGPGSGKTRVVTRRIARLIERRVHPAEILAITFTNKAAREMAERV-------EHL--- 74

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                   I G++                      + V T H FC  I++Q+     +  
Sbjct: 75  --------IPGRR----------------------VAVSTFHKFCARILRQYGGVVGLKP 104

Query: 156 HFAIADEEQSKKLIEEAKK 174
           +F+I D +     ++EA K
Sbjct: 105 NFSILDVKDQDAALKEAVK 123


>gi|223039071|ref|ZP_03609362.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus
           RM3267]
 gi|222879710|gb|EEF14800.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus
           RM3267]
          Length = 931

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 20/174 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + +LL+ A    +  LT TK AA EM  R+++          E
Sbjct: 7   LEASAGSGKTFALSVRFIAILLSGADAREITALTFTKKAANEMKERIVQTFLRLEEKGAE 66

Query: 96  ILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +  AE+ +I G   ++      ++A H L         LK+ T  +F   I++ F L   
Sbjct: 67  L--AELEQILGAGRDEILAMRDARATHFL------ESDLKIGTFDSFFVGILRSFCLNLG 118

Query: 153 ITSHFAIAD---EEQSKKLIEEAKK-----STLASIMLDNNEELKKAFYEILEI 198
           +++ F +++   E Q  + +    K       LA+ ++   E  + +F+E LE+
Sbjct: 119 LSADFEVSENLNELQRGEFVASVSKDMRLLKALAN-LIATAERSQSSFFESLEM 171


>gi|167771642|ref|ZP_02443695.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM
           17241]
 gi|167666282|gb|EDS10412.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM
           17241]
          Length = 1174

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+RV+  +L   +P     LL +T + AAA EM  R++         
Sbjct: 23  VSAAAGSGKTAVLVERVVGRILDEKNPVDADRLLIVTFSNAAALEMKQRIM--------- 73

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                 A ++++    P    + + +          G  ++ TIH+FC  +++       
Sbjct: 74  ------ARMSELIAAHPEDRRLRRQQ-------LLLGRAQISTIHSFCLELIRSNFQALG 120

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           I S+   ADE + + +  +  ++ +   + D+ +       E+L    D+
Sbjct: 121 IASNTRAADERELEIMRRDCARACIEQFLSDDADGGFSQLVELLSAGRDD 170


>gi|167462209|ref|ZP_02327298.1| ATP-dependent deoxyribonuclease (subunit A) [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 1391

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 25/138 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           ++  ++A AGSGKT +LV+R++R +     P     LL  T TKAAA+EM  R+ E    
Sbjct: 40  KNMLIAAAAGSGKTAVLVERIIRRISDEREPVDVDRLLVATFTKAAASEMKERIREA--- 96

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  E+L         K+P    + +   L+       G   + T+H+FC  ++++  
Sbjct: 97  ---LEKELL---------KRPQSPHLRRQLALM-------GRANITTLHSFCLDVIRRHF 137

Query: 149 LEANITSHFAIADEEQSK 166
              ++   F I+ E +++
Sbjct: 138 ASIHLDPVFRISGETETE 155


>gi|294054220|ref|YP_003547878.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221]
 gi|293613553|gb|ADE53708.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221]
          Length = 665

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 88/233 (37%), Gaps = 57/233 (24%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           SF      ID  ++   EQ  A  +DP   A V A AGSGKT  L  RV  LL A     
Sbjct: 7   SFSSAFAPIDFRAELNDEQYAAVTADPG-PALVLAGAGSGKTRTLTYRVAYLLHAGVQAH 65

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT T  AA EM  RV E +TA S                           R L   
Sbjct: 66  EILLLTFTNKAAREMLERV-EDLTAVSR--------------------------RQLW-- 96

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                GG    T H+  + I++Q      +  H+ I DE +++ L++ A  +     +  
Sbjct: 97  -----GG----TFHSIAQRILRQHGEHIGLKRHYTILDESEAESLLKNAINAVDPKFIKG 147

Query: 184 NNEELKKAFYEILEISND----------------EDIETLISDIISNRTALKL 220
            N    K    ++  + +                +D+   I+DI +   A+KL
Sbjct: 148 KNNPKPKVVANMISYARNTCRSVYEEADDHFPFLDDMAQKIADIYTKYQAMKL 200


>gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319438641|gb|EFV93547.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 824

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 62/208 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL    AHP  +L +T T  AAAEM  RV  ++        
Sbjct: 39  IVAGAGSGKTSVLTRRIAYLLAEGGAHPGQILAITFTNKAAAEMRERVAALV-------- 90

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                         P+   M                  V T H+ C  I++ Q  L    
Sbjct: 91  -------------GPHAERMW-----------------VATFHSICVRILRAQSALLGTR 120

Query: 154 TSHFAIADEEQSKKLIE--------EAKKST---LASIMLDNNEELKKAFYEILEISNDE 202
            S+F I D + S++L+         E KK T   LAS + ++  EL+            E
Sbjct: 121 NSNFTIYDSDDSRRLLGMIAKEQQLEVKKFTPRMLASAISNHKNELRDP---------AE 171

Query: 203 DIETLISDIISNRTALKLIFFFFSYLWR 230
            ++  + D  S+RTA  +   F  Y  R
Sbjct: 172 AMDRALED--SDRTAQTVAAVFTEYQAR 197


>gi|251796231|ref|YP_003010962.1| recombination helicase AddA [Paenibacillus sp. JDR-2]
 gi|247543857|gb|ACT00876.1| recombination helicase AddA [Paenibacillus sp. JDR-2]
          Length = 1277

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 22/131 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V+A AGSGKT +LV+R++R + + +    LL  T TKAAAAEM  R+             
Sbjct: 32  VAAAAGSGKTAVLVERIIRKISSFSDVDRLLVATFTKAAAAEMKDRI------------- 78

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                + K   ++P    + +   L+           + T+H+FC  +++++     +  
Sbjct: 79  --RIALEKELERQPESEHLRRQLALM-------NRASITTLHSFCLDVIRRYYPLIGLDP 129

Query: 156 HFAIADEEQSK 166
            F IA+E +S+
Sbjct: 130 GFRIANETESE 140


>gi|258620540|ref|ZP_05715577.1| DNA helicase II [Vibrio mimicus VM573]
 gi|258587055|gb|EEW11767.1| DNA helicase II [Vibrio mimicus VM573]
          Length = 534

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 41/163 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             T H  C  I++   L+A +   F I D +  ++L++   K+
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKA 130


>gi|115378130|ref|ZP_01465306.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310821254|ref|YP_003953612.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364872|gb|EAU63931.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309394326|gb|ADO71785.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 692

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 37/157 (23%)

Query: 14  IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  +    EQL A +     A V A AG+GKT  L  RV RLL     P  +L LT T 
Sbjct: 19  IDYAALLNEEQLRAVEAGEGPALVIAGAGTGKTRTLTFRVARLLERGIPPEGVLLLTFTN 78

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ RV E+   +          ++ +I G                          
Sbjct: 79  KAAREMTRRVEELAGGF---------VDVRRILGG------------------------- 104

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H    A+++QF       + F + D E ++ L+
Sbjct: 105 --TFHHAAHALLRQFAPTLGFATSFTVLDREDARDLM 139


>gi|89891075|ref|ZP_01202583.1| putative ATP-dependent DNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516719|gb|EAS19378.1| putative ATP-dependent DNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 1605

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 20   TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
            T   Q++  + +    V A  GSGKT +LV ++  LLL  +  P   L LT +KAAA E 
Sbjct: 1037 TDQTQVINDNKSDKILVYAGPGSGKTKVLVHKIASLLLIEDIKPEQFLMLTFSKAAALEF 1096

Query: 79   SHRVLEIITAWSHL 92
              RV ++I  +S L
Sbjct: 1097 KQRVRKLIPEYSGL 1110


>gi|326798725|ref|YP_004316544.1| UvrD/REP helicase [Sphingobacterium sp. 21]
 gi|326549489|gb|ADZ77874.1| UvrD/REP helicase [Sphingobacterium sp. 21]
          Length = 1114

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 3/127 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AGSGKT  L    + LL  +  H S +L +T T  A AEM HR+L +I   +  S+
Sbjct: 10  LKASAGSGKTFSLAAHYISLLFTSKVHFSEILAVTFTNKATAEMKHRILTVIEGLALGSE 69

Query: 95  EILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            + S    I +   +   +    KA  +   IL       + TI  F + I++ F  E  
Sbjct: 70  AVESYRNIILEAHPQLSRQDIQQKAMEVYRQILHNYSRFAISTIDGFYQKIIRSFSFELG 129

Query: 153 ITSHFAI 159
           + + + +
Sbjct: 130 LNAAYRL 136


>gi|158321059|ref|YP_001513566.1| hypothetical protein Clos_2033 [Alkaliphilus oremlandii OhILAs]
 gi|158141258|gb|ABW19570.1| hypothetical protein Clos_2033 [Alkaliphilus oremlandii OhILAs]
          Length = 812

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           I + K E ++ +DPT    V+A  G+GKT+ L++R+  L L    +P  ++ L+ +KAA 
Sbjct: 202 ILEDKQEDVIVADPTTKILVNAGPGTGKTYTLIERIKYLTLEEGINPENMMILSFSKAAI 261

Query: 76  AEMSHRV 82
            E+  R+
Sbjct: 262 GEIHKRL 268


>gi|88861280|ref|ZP_01135912.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2]
 gi|88816761|gb|EAR26584.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2]
          Length = 721

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 41/160 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ + NA P ++  +T
Sbjct: 4   SELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIFAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV E                                      T+  + G
Sbjct: 62  FTNKAAKEMRSRVEE--------------------------------------TLKTSAG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           G+ + T H     I++    EA++   F I D +   ++I
Sbjct: 84  GMWIGTFHGLAHRILRAHHREAHLPEAFQILDSDDQIRMI 123


>gi|288802440|ref|ZP_06407879.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18]
 gi|288334968|gb|EFC73404.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18]
          Length = 851

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 51/178 (28%)

Query: 16  LISQTKSEQLLAS--DPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           +I+Q K E +LA+  +  R A         V A AGSGKT +L  ++  LL     P  +
Sbjct: 1   MINQDKEEAILAALNESQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLAPWNI 60

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT T  AA EM  R+ +I TA                            A+HL +   
Sbjct: 61  LALTFTNKAAREMKERIAQITTA--------------------------KDAQHLYMG-- 92

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                    T H+    I+++        S+F I DE  S+ LI    KS + ++ LD
Sbjct: 93  ---------TFHSIFARILRREGEAIGFGSNFTIYDENDSRSLI----KSIVKALDLD 137


>gi|89889935|ref|ZP_01201446.1| putative ATP-dependent helicase, UvrD/REP helicase family
           [Flavobacteria bacterium BBFL7]
 gi|89518208|gb|EAS20864.1| putative ATP-dependent helicase, UvrD/REP helicase family
           [Flavobacteria bacterium BBFL7]
          Length = 1057

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 15/201 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           + + SA+AGSGKT+ L +  L LL     N H   +L +T T  A AEM  RVLE +  +
Sbjct: 6   TTFYSASAGSGKTYTLARDYLALLFQSQFNNHYRKILAVTFTNKAVAEMKERVLEHLYNF 65

Query: 90  SH--LSDEILS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
               + +E L     I K+ G    +   +KA  +   +L       + TI AF   I++
Sbjct: 66  GKQPVPNESLGIFNHIKKLTGLSEQQLS-TKAIKIHQRLLHDYSAFDIVTIDAFNHRILR 124

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
            F  + ++ + F +  E  +  LI +A ++ LA    D     K   + + +I N++  +
Sbjct: 125 TFAKDIDLPAGFEV--ELDTDSLINKAIQNLLARAGRDKELTKKLVSFSLSKIDNNKSWD 182

Query: 206 TL-----ISDIISNRTALKLI 221
                  IS +I N    K +
Sbjct: 183 VAYDLMQISALIKNENHFKYL 203


>gi|256544667|ref|ZP_05472039.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399556|gb|EEU13161.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 1139

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 23/127 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +LV R++ ++L    P   ++ +T T  A+ EM  R+ + +        
Sbjct: 31  VSAAAGSGKTRVLVDRLVSIMLEEKIPIKNMIIVTFTNKASVEMKDRIRQKLN------- 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEANI 153
           E++          K   SD    ++ + +I +      ++T+H+FC + + + F L  N+
Sbjct: 84  ELM----------KEGNSDKIFIKNQIKSINDAF----IKTLHSFCADMLRENFYLSDNL 129

Query: 154 TSHFAIA 160
           +  F IA
Sbjct: 130 SPSFKIA 136


>gi|253698974|ref|YP_003020163.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M21]
 gi|251773824|gb|ACT16405.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M21]
          Length = 1129

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 15/145 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    LRL+L      S +L +T T+AA  E+  R+   +       +
Sbjct: 17  IEASAGTGKTFTIAGVYLRLVLEEKFDVSRILVVTFTEAATKELKERIRNKL---KEAEN 73

Query: 95  EILS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             L+  AE   I G   +  D S+AR LL + + +     + TIH FC+ ++Q  P E+ 
Sbjct: 74  GFLTGAAEDFLIDGLLKSTPDHSEARRLLGSAVRSFDEAAIFTIHGFCQRMLQDNPFESG 133

Query: 153 ITSHFAIADEE----QSKKLIEEAK 173
                ++ D E    Q K L+E A+
Sbjct: 134 -----SLCDTELVTDQGKILMEIAQ 153


>gi|300856842|ref|YP_003781826.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436957|gb|ADK16724.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 746

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 39/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  ++   N +PS +L +T T  AA EM  R+ E++       DE+
Sbjct: 26  AGAGSGKTRVLTYRIAHMIKDMNIYPSKILAITFTNKAAGEMKDRIKELV------GDEV 79

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                            G+ V T H+ C  I+++   +     +
Sbjct: 80  --------------------------------DGMWVSTFHSSCVRILRREIDKLGYNKN 107

Query: 157 FAIADEEQSKKLIEEAKK 174
           FAI D    K LI++  K
Sbjct: 108 FAIYDSYDQKVLIKQCMK 125


>gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 829

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 38/141 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A  GSGKT +L +RVLR + +   P  +LCLT T  AA EMS R              
Sbjct: 22  VLAPVGSGKTWVLSERVLRAVNSGIPPQQILCLTFTNRAAQEMSDR-------------- 67

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                   L   + E    L ++T H  C  +++    +A + +
Sbjct: 68  ------------------------LRAYLPEQANQLTIKTFHGLCAWMLRLEGQQAGLAA 103

Query: 156 HFAIADEEQSKKLIEEAKKST 176
            F+I DE   K+L++E    T
Sbjct: 104 DFSIYDENDCKELLKEISGRT 124


>gi|104784398|ref|YP_610896.1| DNA-dependent helicase II [Pseudomonas entomophila L48]
 gi|95113385|emb|CAK18113.1| DNA-dependent ATPase I and helicase II [Pseudomonas entomophila
           L48]
          Length = 727

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 30  VLAGAGSGKTRVLVHRIAWLIQVVQASPHSILSVTFTNKAAAEMRHRIEQLLGI------ 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P G+ V T H     +++    EA + 
Sbjct: 84  --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEAGLA 111

Query: 155 SHFAIADEEQSKKLIE 170
            +F I D +  ++LI+
Sbjct: 112 QNFQILDSDDQQRLIK 127


>gi|298207221|ref|YP_003715400.1| putative helicase [Croceibacter atlanticus HTCC2559]
 gi|83849857|gb|EAP87725.1| putative helicase [Croceibacter atlanticus HTCC2559]
          Length = 1054

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWS--H 91
           +A+AGSGKT  LV+  L LL +        ++L +T T  A AEM  R++E + A+S  +
Sbjct: 10  NASAGSGKTFSLVRDYLSLLFSAKKTDAFRSILAITFTNKAVAEMKSRIVENLIAFSKDN 69

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARH--LLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             D+ L A +  +        D+ K R   LL  ++      ++ TI  F   +++ F  
Sbjct: 70  TQDDYL-AMLNAVANSTNISQDLIKTRSVILLKKLIHNYAAFEISTIDGFTHRVLRTFAK 128

Query: 150 EANITSHFAI 159
           +  + S+F +
Sbjct: 129 DLGLPSNFEV 138


>gi|152985841|ref|YP_001351544.1| DNA-dependent helicase II [Pseudomonas aeruginosa PA7]
 gi|150960999|gb|ABR83024.1| DNA helicase II [Pseudomonas aeruginosa PA7]
          Length = 728

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR+ +++  
Sbjct: 23  PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                  P G+ V T H     +++   
Sbjct: 83  --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA ++ +F I D +  ++L++
Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126


>gi|320334525|ref|YP_004171236.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211]
 gi|319755814|gb|ADV67571.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211]
          Length = 768

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++Q    Q  A+D  T  A V A AGSGKT  LV R+  L+   + HP  +L +T T 
Sbjct: 31  DLLAQLNPNQAQAADHHTGPALVIAGAGSGKTRTLVYRIAHLIQHYDVHPGEILAVTFTN 90

Query: 73  AAAAEMSHRVLEIITAWSHL 92
            AAAEM  R   ++   + L
Sbjct: 91  KAAAEMRERASHLVQGANQL 110


>gi|171912577|ref|ZP_02928047.1| probable helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 1067

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 23/165 (13%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  + A+AG+GKTH LVQR L LL   A P  +  +T T+ AA E   R+L+ +   S 
Sbjct: 5   KNELIRASAGTGKTHSLVQRYLWLLEHGAEPERIAAMTFTRKAAGEFFERILQELATRS- 63

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                      K  G  P          LL  ++     L++ TI +F   + Q  P E 
Sbjct: 64  ----------MKAGGGLP--------LTLLRKVVRRMDQLRLGTIDSFFATMTQCLPFEL 105

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN----EELKKAF 192
            +T   A+  E ++ +  EE   S L +I   N+    +EL++A+
Sbjct: 106 GLTGKAALMSEAEATRAEEEVMDSLLLAIGRMNDAAALDELREAW 150


>gi|322383647|ref|ZP_08057398.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151859|gb|EFX44802.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 1350

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 25/134 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++A AGSGKT +LV+R++R +     P     LL  T TKAAA+EM  R+ E       L
Sbjct: 3   IAAAAGSGKTAVLVERIIRRISDEREPVDVDRLLVATFTKAAASEMKERIREA------L 56

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E+L         K+P    + +   L+       G   + T+H+FC  ++++     +
Sbjct: 57  EKELL---------KRPQSPHLRRQLALM-------GRANITTLHSFCLDVIRRHFASIH 100

Query: 153 ITSHFAIADEEQSK 166
           +   F I+ E +++
Sbjct: 101 LDPVFRISGETETE 114


>gi|257440573|ref|ZP_05616328.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257196896|gb|EEU95180.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 1233

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 25/167 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           T +++    D   +  VSA AGSGKT +L +R +RL+    HP     LL +T T AAAA
Sbjct: 7   TPAQRAAIEDRGGALLVSAAAGSGKTAVLTERAVRLITDPEHPVDADRLLIVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ + +   S                 +P    + + R LL      P    + TI
Sbjct: 67  ELRARIGQALLKRSQ---------------AEPGNGALRRQRMLL---QRAP----ICTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            AFC  ++++     +I   F+ AD    + L   A   TL +   D
Sbjct: 105 DAFCLDLLRKHFQALDIPPDFSPADPGSVELLRASALSETLENAYRD 151


>gi|15600636|ref|NP_254130.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAO1]
 gi|107104547|ref|ZP_01368465.1| hypothetical protein PaerPA_01005625 [Pseudomonas aeruginosa PACS2]
 gi|218894546|ref|YP_002443416.1| DNA-dependent helicase II [Pseudomonas aeruginosa LESB58]
 gi|313111618|ref|ZP_07797417.1| DNA helicase II [Pseudomonas aeruginosa 39016]
 gi|9951773|gb|AAG08828.1|AE004957_3 DNA helicase II [Pseudomonas aeruginosa PAO1]
 gi|7229494|gb|AAF42852.1| mismatch repair protein MutU [Pseudomonas aeruginosa PAO1]
 gi|218774775|emb|CAW30592.1| DNA helicase II [Pseudomonas aeruginosa LESB58]
 gi|310883919|gb|EFQ42513.1| DNA helicase II [Pseudomonas aeruginosa 39016]
          Length = 728

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR+ +++  
Sbjct: 23  PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                  P G+ V T H     +++   
Sbjct: 83  --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA ++ +F I D +  ++L++
Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126


>gi|254237872|ref|ZP_04931195.1| DNA helicase II [Pseudomonas aeruginosa C3719]
 gi|254242995|ref|ZP_04936317.1| DNA helicase II [Pseudomonas aeruginosa 2192]
 gi|126169803|gb|EAZ55314.1| DNA helicase II [Pseudomonas aeruginosa C3719]
 gi|126196373|gb|EAZ60436.1| DNA helicase II [Pseudomonas aeruginosa 2192]
          Length = 728

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR+ +++  
Sbjct: 23  PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                  P G+ V T H     +++   
Sbjct: 83  --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA ++ +F I D +  ++L++
Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126


>gi|296392306|ref|ZP_06881781.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAb1]
          Length = 728

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR+ +++  
Sbjct: 23  PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                  P G+ V T H     +++   
Sbjct: 83  --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA ++ +F I D +  ++L++
Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126


>gi|116053593|ref|YP_793920.1| DNA-dependent helicase II [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588814|gb|ABJ14829.1| DNA helicase II [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 728

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR+ +++  
Sbjct: 23  PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                  P G+ V T H     +++   
Sbjct: 83  --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA ++ +F I D +  ++L++
Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126


>gi|300245038|gb|ADJ94112.1| UvrD helicase [Hordeum vulgare subsp. vulgare]
          Length = 1185

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 44/179 (24%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           K  +   SD      + A  GSGKT  +V RVL LL     PS +L +T T AAA+EM  
Sbjct: 310 KQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGISPSNILAMTFTTAAASEMRD 369

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+  ++                   GK       + A+ ++I+           T H+FC
Sbjct: 370 RIGAVV-------------------GK-------AVAKEIIIS-----------TFHSFC 392

Query: 141 EAIMQQFPLEANITSHFAIADEEQSK-------KLIEEAKKSTLASIMLDNNEELKKAF 192
             + +    +   TS F I    Q +       +L+E  K   L   +   + ++K +F
Sbjct: 393 LQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGDAVKQCDGDIKNSF 451


>gi|325830815|ref|ZP_08164199.1| UvrD/REP helicase [Eggerthella sp. HGA1]
 gi|325487222|gb|EGC89665.1| UvrD/REP helicase [Eggerthella sp. HGA1]
          Length = 1231

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 39/166 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-----LLCLTHTKAAAAEMSHRVLEIITAWS 90
           VSA AGSGKT  L QR+   LL  + P+      +L +T T+ AAAE+  RV   + A  
Sbjct: 23  VSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAITFTEKAAAEIKARVKRTLRA-- 80

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E L+ E  ++ G                          + TIH  C  I++   L+
Sbjct: 81  ----EGLAEEALRVDGA------------------------WISTIHGMCARILRAHALD 112

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
             +   F I  + +  + + +A    L     D+N+ + +  Y  L
Sbjct: 113 LGLDPAFGIMGDAERAEAVADAIDGALG----DDNDIIARGSYAAL 154


>gi|257790997|ref|YP_003181603.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257474894|gb|ACV55214.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 1165

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 39/166 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-----LLCLTHTKAAAAEMSHRVLEIITAWS 90
           VSA AGSGKT  L QR+   LL  + P+      +L +T T+ AAAE+  RV   + A  
Sbjct: 23  VSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAITFTEKAAAEIKARVKRTLRA-- 80

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               E L+ E  ++ G                          + TIH  C  I++   L+
Sbjct: 81  ----EGLAEEALRVDGA------------------------WISTIHGMCARILRAHALD 112

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
             +   F I  + +  + + +A    L     D+N+ + +  Y  L
Sbjct: 113 LGLDPAFGIMGDAERAEAVADAIDGALG----DDNDIIARGSYAAL 154


>gi|298292379|ref|YP_003694318.1| UvrD/REP helicase [Starkeya novella DSM 506]
 gi|296928890|gb|ADH89699.1| UvrD/REP helicase [Starkeya novella DSM 506]
          Length = 690

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 31/135 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT+ L  RV  L++  A P  ++ LT ++ AAAEM+ RV            E
Sbjct: 35  VIAGAGSGKTNTLAHRVAHLIVNGADPRRIMLLTFSRRAAAEMTRRV------------E 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-VQTIHAFCEAIMQQFPLEANIT 154
            ++A +       PN + +++             GL    T H     +++ + ++  + 
Sbjct: 83  RIAAHVL-----GPNAAVLTE-------------GLTFAGTFHGVGARLLRDYAVQIGLD 124

Query: 155 SHFAIADEEQSKKLI 169
            +F I D E S  LI
Sbjct: 125 PNFTIHDREDSADLI 139


>gi|323526899|ref|YP_004229052.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323383901|gb|ADX55992.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 741

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 35/59 (59%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT+ L  RV  L++  A P  +L LT ++ AA EM+ RV  I TA
Sbjct: 68  PPGALLVIAGAGSGKTNTLAHRVANLMVKGADPRRILLLTFSRRAALEMTRRVTRIATA 126


>gi|312132140|ref|YP_003999480.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132]
 gi|311908686|gb|ADQ19127.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132]
          Length = 1028

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 12/143 (8%)

Query: 37  SANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           S++AGSGKT  L +  +  +LA   + +   +L +T T  AA +M  R   II+    L+
Sbjct: 11  SSSAGSGKTFTLTREYISTVLAAQEDDYFKRILAMTFTNEAAEQMKER---IISTLKGLA 67

Query: 94  DEILSAEITKIQGKKP---NKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           ++  +AE  K Q +     +  D++ K+R +L  IL+      ++TI +F   ++Q F +
Sbjct: 68  NQDGAAEAYKEQIQDATGLSDEDLARKSRKVLHEILQNYNDFAIKTIDSFVNQVIQSFAI 127

Query: 150 EANITSHFAIADEEQSKKLIEEA 172
           +  +  ++ I  +  +  LIEEA
Sbjct: 128 DLKLPYNYEIVLDTNT--LIEEA 148


>gi|170696350|ref|ZP_02887480.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170138756|gb|EDT06954.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 738

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 35/59 (59%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT+ L  RV  L++  A P  +L LT ++ AA EM+ RV  I TA
Sbjct: 55  PPGALLVIAGAGSGKTNTLAHRVANLMVKGADPGRILLLTFSRRAALEMTRRVTRIATA 113


>gi|116621025|ref|YP_823181.1| DNA helicase/exodeoxyribonuclease V subunit A [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224187|gb|ABJ82896.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 1045

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 35/170 (20%)

Query: 23  EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           +QL A D  +   +A V A  GSGKT +LV+   RL+ A+  P  +L +T T+ AA  M 
Sbjct: 9   DQLDAVDVEKRHLNACVVAGPGSGKTTVLVEYFRRLVEADVDPLRILAITFTEKAAGNMR 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++ +                    Q +   ++ + +A               V T+H F
Sbjct: 69  KKLGQ------------------AFQDQPQIRARLERAW--------------VSTVHGF 96

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           C  ++++  + A +   F + D  +S ++ +EA ++ + S+  D+ E ++
Sbjct: 97  CARLLRENAVFAGVDPEFRVLDATESWRMQQEAMRTAIDSLFADHLEGMR 146


>gi|158321312|ref|YP_001513819.1| recombination helicase AddA [Alkaliphilus oremlandii OhILAs]
 gi|251764496|sp|A8MJ41|ADDA_ALKOO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|158141511|gb|ABW19823.1| Recombination helicase AddA [Alkaliphilus oremlandii OhILAs]
          Length = 1197

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 35/227 (15%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
           TK +Q        +  V+A AGSGKT +LV+R+++++L +      LL +T T AAA EM
Sbjct: 5   TKEQQAAIDARGSNLLVAAAAGSGKTAVLVERIIQIILKDRIDIDRLLIVTFTNAAAGEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R              I  A +T+++ K   +  + +   LL           + T+H+
Sbjct: 65  RER--------------IAGAIMTEMEKKTGGEEHLRRQLSLL-------NRASITTVHS 103

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  ++++     ++   F I D  ++  +  EA    L  +  D  E+  + F+ ++E 
Sbjct: 104 FCIDVVRRHFHMIDVDPGFRIGDVTETSIMKLEA----LEELFEDEYEKGNEEFFNLVEA 159

Query: 199 SNDEDIETLISDIISNRTALKLIFFF----FSYLWRRKIIEKSLWSI 241
                 +  + D++     LK+  F     +  +W R+ +E    SI
Sbjct: 160 FGGTREDRPLQDLV-----LKIYGFIQSQPYPEIWLRERVEDFALSI 201


>gi|326517054|dbj|BAJ96519.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 774

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 44/179 (24%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           K  +   SD      + A  GSGKT  +V RVL LL     PS +L +T T AAA+EM  
Sbjct: 310 KQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGISPSNILAMTFTTAAASEMRD 369

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+  ++                   GK       + A+ ++I+           T H+FC
Sbjct: 370 RIGAVV-------------------GK-------AVAKEIIIS-----------TFHSFC 392

Query: 141 EAIMQQFPLEANITSHFAIADEEQSK-------KLIEEAKKSTLASIMLDNNEELKKAF 192
             + +    +   TS F I    Q +       +L+E  K   L   +   + ++K +F
Sbjct: 393 LQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGDAVKQCDGDIKNSF 451


>gi|254497559|ref|ZP_05110348.1| DNA-dependent helicase II [Legionella drancourtii LLAP12]
 gi|254353217|gb|EET11963.1| DNA-dependent helicase II [Legionella drancourtii LLAP12]
          Length = 725

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 47/178 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIIT 87
           P  +  V A AGSGKT +LV R+   L+   H  P  +L +T T  AA EM  R      
Sbjct: 21  PLGNTLVLAGAGSGKTKVLVSRIA-WLIEEEHISPHGILAVTFTNKAAGEMRAR------ 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQ 146
                                            L ++L TP  GL V T H  C  ++++
Sbjct: 74  ---------------------------------LNSLLATPVLGLWVGTFHGLCHRLLRR 100

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
              EAN+   F I D E   ++I    K  +A++ LD+ +   K     +    DE +
Sbjct: 101 HYKEANLPEQFHILDSEDQARVI----KRVIAALNLDSEQWPVKQAQSFINGRKDEGV 154


>gi|108763229|ref|YP_630836.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108467109|gb|ABF92294.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK
           1622]
          Length = 1220

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 23/162 (14%)

Query: 26  LASDPT-----RSAWVSANAGSGKTHILVQRVLRLLLAN------AHPSTLLCLTHTKAA 74
           ++S+P+     R+  + A AG+GKT+ LV   L LL           PS L  LT T  A
Sbjct: 1   MSSEPSLFALERNLALMAGAGAGKTYSLVTMTLHLLAGARVAGGAVRPSRLCMLTFTDKA 60

Query: 75  AAEMSHRVLEIITAWSH----LSDEI-LSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           AAEM  RV + +   +     L  E+ L   + ++    P      + R       E  G
Sbjct: 61  AAEMRSRVRQRLDGLAQGDTRLDQEVDLRESLARLDKPFPLPDAWRQLR-------EELG 113

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
              V T H+ C  ++++ P    I  +F + D  ++  L+++
Sbjct: 114 AATVGTFHSLCGQLLRRAPPAVGIDPNFEVLDSLEATGLVQD 155


>gi|282889815|ref|ZP_06298354.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500389|gb|EFB42669.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 677

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 47/157 (29%)

Query: 23  EQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           E+L A +P++ A V+         A AGSGKT +L  R+  L+ +  A P ++L LT T 
Sbjct: 7   EELDALNPSQRAAVTTTDGRVLILAGAGSGKTKVLTVRMAYLMSIKGASPKSILGLTFTN 66

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+     A  H++ +I                                    
Sbjct: 67  KAAAEMRHRIGAF--AAPHIAKQI-----------------------------------S 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           + T H+FC  I++    +   T  F++ DE+  ++LI
Sbjct: 90  LCTFHSFCMQILRAEIHKLGYTPQFSLYDEKDVQRLI 126


>gi|123968742|ref|YP_001009600.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. AS9601]
 gi|123198852|gb|ABM70493.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           AS9601]
          Length = 1208

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 22/172 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L   + + +L  
Sbjct: 15  VEASAGTGKSFTLAHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKIL---SRFLNLKL 71

Query: 95  EILSAEITKIQGKKP----NKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQ 146
            + S +  KI         N  D  K++  +I+     +     LKV T HAFC  I+ +
Sbjct: 72  YLQSYKECKIDNTLKDWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDE 131

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN----NEELKKAFYE 194
           + +E  +T    I +       I+   K  + ++ +D+    N EL  A Y+
Sbjct: 132 YSIEIGLTQDPYIENN------IDNLYKDVIDNLWIDDFLNLNHELISAVYK 177


>gi|222054488|ref|YP_002536850.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32]
 gi|221563777|gb|ACM19749.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32]
          Length = 1083

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 14/123 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL-- 92
           + A+AG+GKT  +    LRL+L    P   +L +T T+AA  E+  R+ + +T  +    
Sbjct: 17  IEASAGTGKTFAIAALYLRLVLEQHLPVEQILVVTFTEAATKELRERIRKRLTEAAEAFG 76

Query: 93  ----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
               +D  L   I +I       +D S A   L   L +     + TIH FC+ ++Q+ P
Sbjct: 77  QGTSTDSFLMCLIGRI-------TDRSAAGQALTNALRSFDEAAIFTIHGFCQRMLQENP 129

Query: 149 LEA 151
            E+
Sbjct: 130 FES 132


>gi|307721378|ref|YP_003892518.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
 gi|306979471|gb|ADN09506.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
          Length = 693

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ  A + P     + A+AG+GKT  +V R+  LL  N  P+ +L LT T  AA
Sbjct: 3  LSRLNEEQYAAATSPHSKNLIIASAGTGKTSTIVGRIGHLLNNNIEPNEILLLTFTNKAA 62

Query: 76 AEMSHRVLEIITA 88
          AEM  RV E   A
Sbjct: 63 AEMVARVAEYFGA 75


>gi|256384179|gb|ACU78749.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385011|gb|ACU79580.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296456014|gb|ADH22249.1| UvrD/REP helicase domain protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 722

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 48/189 (25%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +DL++  +   ++ +D P R   + A AGSGKT ++  ++  L+   +  P+ +L +T T
Sbjct: 7   LDLLNPQQLAAVINTDKPVR---IIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RVL+I                TK Q K P                      
Sbjct: 64  NKAAKEMKERVLQI----------------TKNQKKSP---------------------- 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--- 188
            + T HA+C  +++       +   F I D +  K++I+ A K   ++I L  N++    
Sbjct: 86  FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKE--SNIELSENDKKTFD 143

Query: 189 KKAFYEILE 197
           KK  Y+I E
Sbjct: 144 KKILYKIKE 152


>gi|153006848|ref|YP_001381173.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152030421|gb|ABS28189.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 1083

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 31/144 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           +SA+AG+GKTH L   + + LL  +A P  ++ +T+T  AA E+  R+ E +        
Sbjct: 6   ISASAGTGKTHRLTGDLTKALLDGSARPEGVVAITYTVKAAGELESRIRESL-------- 57

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                    ++  +P  +   +  +             + TIH+ C+ ++++F LEA ++
Sbjct: 58  ---------LKAGRPELAARIRDGY-------------IGTIHSVCQRLLREFALEAGLS 95

Query: 155 SHFAIADEEQSKKLIEEAKKSTLA 178
                  E + K+L + A  S LA
Sbjct: 96  PWLEPIPEPERKRLFDVALASVLA 119


>gi|261405600|ref|YP_003241841.1| recombination helicase AddA [Paenibacillus sp. Y412MC10]
 gi|261282063|gb|ACX64034.1| recombination helicase AddA [Paenibacillus sp. Y412MC10]
          Length = 1373

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 25/133 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R +L +A       LL  T TKAAAAEM  R+          
Sbjct: 30  VAAAAGSGKTAVLVERIIRKILDDAAGFSVDRLLVATFTKAAAAEMRGRI---------- 79

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E L  E+     + P+   + +   LL       G   + T+H+FC  +++++     
Sbjct: 80  -REALDRELD----RDPDNEHIRRQLALL-------GRASITTLHSFCMEVIRRYYQLIP 127

Query: 153 ITSHFAIADEEQS 165
           +   F I +E ++
Sbjct: 128 LDPGFRILNEHEA 140


>gi|329924069|ref|ZP_08279332.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5]
 gi|328940908|gb|EGG37216.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5]
          Length = 1376

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 25/133 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R +L +A       LL  T TKAAAAEM  R+          
Sbjct: 30  VAAAAGSGKTAVLVERIIRKILDDAAGFSVDRLLVATFTKAAAAEMRGRI---------- 79

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E L  E+     + P+   + +   LL       G   + T+H+FC  +++++     
Sbjct: 80  -REALDRELD----RDPDNEHIRRQLALL-------GRASITTLHSFCMEVIRRYYQLIP 127

Query: 153 ITSHFAIADEEQS 165
           +   F I +E ++
Sbjct: 128 LDPGFRILNEHEA 140


>gi|260463377|ref|ZP_05811578.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
 gi|259030967|gb|EEW32242.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
          Length = 697

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 29/134 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT+ L  RV  L++  A P  +L +T ++ AA+EM+ RV  I       + E
Sbjct: 44  VIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRAASEMARRVERI-------AGE 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L  +                    +IT   T  G    T H     +++ + LE  +  
Sbjct: 97  VLGRDAA------------------VITDALTWAG----TFHGIGARLLRDYALEIGLDP 134

Query: 156 HFAIADEEQSKKLI 169
            F I D E S  L+
Sbjct: 135 AFTIHDREDSADLM 148


>gi|108762524|ref|YP_631669.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108466404|gb|ABF91589.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK
           1622]
          Length = 692

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 14  IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  +    EQL A +       V A AGSGKT  L  RV R+L     P+ +L LT T 
Sbjct: 19  IDYAALLNEEQLRAVEAGEGPVLVIAGAGSGKTRTLTFRVARMLERGVPPAGILLLTFTN 78

Query: 73  AAAAEMSHRVLEIITAWS----------HLSDEILSAEITKIQGKKPNKS--DMSKARHL 120
            AA EM+ RV E+  A+           H +  +L  +   + G   N +  D   AR L
Sbjct: 79  KAAREMTRRVEELAGAFVDVRRILGGTFHHAAHVLLRQYAGVLGFSTNFTVLDREDARDL 138

Query: 121 LITIL 125
           ++T +
Sbjct: 139 MVTCI 143


>gi|319784375|ref|YP_004143851.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170263|gb|ADV13801.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 697

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 29/134 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT+ L  RV  L++  A P  +L +T ++ AA+EM+ RV  I       + E
Sbjct: 44  VIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRAASEMARRVERI-------AGE 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L  +                    +IT   T  G    T H     +++ + LE  +  
Sbjct: 97  VLGRDAA------------------VITDALTWAG----TFHGIGARLLRDYALEIGLDP 134

Query: 156 HFAIADEEQSKKLI 169
            F I D E S  L+
Sbjct: 135 AFTIHDREDSADLM 148


>gi|52629180|gb|AAU27921.1| DNA dependent ATPase I and helicase II [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 730

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
           + P  +  V A AGSGKT +LV R+   L+   H  P  +L +T T  AA EM  R    
Sbjct: 28  TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 82

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144
                                              L ++L TP  GL V T H  C  ++
Sbjct: 83  -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 107

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           ++   EAN+   F I D E   ++I    K  + S+ LD
Sbjct: 108 RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 142


>gi|307610545|emb|CBX00132.1| DNA helicase II [Legionella pneumophila 130b]
          Length = 721

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
           + P  +  V A AGSGKT +LV R+   L+   H  P  +L +T T  AA EM  R    
Sbjct: 19  TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 73

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144
                                              L ++L TP  GL V T H  C  ++
Sbjct: 74  -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 98

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           ++   EAN+   F I D E   ++I    K  + S+ LD
Sbjct: 99  RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 133


>gi|229814925|ref|ZP_04445263.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM
           13280]
 gi|229809412|gb|EEP45176.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM
           13280]
          Length = 1179

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 35/170 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68
           +DL +    ++ + +   R  +VSA AGSGKT  L +R+L  L   + P       +L +
Sbjct: 1   MDLSTLMPQQRDIVTTLDRPLFVSAGAGSGKTFTLTRRILWALSPESGPFIRNLDRVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T TK AAAE+  RV                A I +  G    + D +             
Sbjct: 61  TFTKDAAAEIRERV--------------RGALIEEGMGDIALQVDDA------------- 93

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
               + TIH  C  I++   LE  +   F++ DE  S  L++ A  + +A
Sbjct: 94  ---WISTIHGMCSRILRAHALELGLDPEFSVLDESVSGPLMDRAVDAVIA 140


>gi|54297755|ref|YP_124124.1| DNA-dependent helicase II [Legionella pneumophila str. Paris]
 gi|148359389|ref|YP_001250596.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str.
           Corby]
 gi|296107435|ref|YP_003619135.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53751540|emb|CAH12958.1| DNA helicase II [Legionella pneumophila str. Paris]
 gi|148281162|gb|ABQ55250.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str.
           Corby]
 gi|295649336|gb|ADG25183.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 721

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
           + P  +  V A AGSGKT +LV R+   L+   H  P  +L +T T  AA EM  R    
Sbjct: 19  TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 73

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144
                                              L ++L TP  GL V T H  C  ++
Sbjct: 74  -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 98

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           ++   EAN+   F I D E   ++I    K  + S+ LD
Sbjct: 99  RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 133


>gi|310657539|ref|YP_003935260.1| ATP-dependent nuclease subunit a [Clostridium sticklandii DSM 519]
 gi|308824317|emb|CBH20355.1| ATP-dependent nuclease, subunit A [Clostridium sticklandii]
          Length = 1184

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 22/127 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +LVQR++ ++L        LL +T T AAAAEM  R+ +++     + D
Sbjct: 20  VSAAAGSGKTAVLVQRIIDIVLNEKVDVQNLLIVTFTNAAAAEMKDRIQKML--MQRMLD 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P +S      H L   ++      + T+H+FC  I+++     ++ 
Sbjct: 78  -------------NPQES------HYLTKQIQNLPRASISTMHSFCIDILRRNFHMLDLD 118

Query: 155 SHFAIAD 161
             F IA+
Sbjct: 119 PSFKIAN 125


>gi|305432274|ref|ZP_07401437.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
 gi|304444622|gb|EFM37272.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
          Length = 920

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 11/132 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L     + +L LT TK A+ EM  R++E        S +
Sbjct: 9   LEASAGSGKTFALSVRFVALILQGTKINEILALTFTKKASNEMKKRIIETFLNLEKESKK 68

Query: 96  ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               E+ ++ G + ++     D  K   L          LK+ T  +F   I++ F L  
Sbjct: 69  SECKELCELLGCEEDELIFLRDKKKQEFL-------RQELKISTFDSFFSRILRAFALNL 121

Query: 152 NITSHFAIADEE 163
            ++S F  ++E+
Sbjct: 122 GLSSDFDTSEEK 133


>gi|182415966|ref|YP_001821032.1| UvrD/REP helicase [Opitutus terrae PB90-1]
 gi|177843180|gb|ACB77432.1| UvrD/REP helicase [Opitutus terrae PB90-1]
          Length = 668

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 9  EHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
          E    ID  +Q   EQ  A  ++P     V A AGSGKT  L  RV  LL     P  +L
Sbjct: 11 EQIPPIDFRAQLNDEQFAAVTAEPG-PLLVLAGAGSGKTRTLTYRVAYLLSRGVKPGEIL 69

Query: 67 CLTHTKAAAAEMSHRVLEI 85
           LT T  AA EM HRV ++
Sbjct: 70 LLTFTNKAAKEMLHRVQDL 88


>gi|54294730|ref|YP_127145.1| DNA-dependent helicase II [Legionella pneumophila str. Lens]
 gi|53754562|emb|CAH16046.1| DNA helicase II [Legionella pneumophila str. Lens]
          Length = 721

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
           + P  +  V A AGSGKT +LV R+   L+   H  P  +L +T T  AA EM  R    
Sbjct: 19  TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 73

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144
                                              L ++L TP  GL V T H  C  ++
Sbjct: 74  -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 98

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           ++   EAN+   F I D E   ++I    K  + S+ LD
Sbjct: 99  RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 133


>gi|161723247|ref|YP_095868.2| DNA-dependent helicase II [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 721

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
           + P  +  V A AGSGKT +LV R+   L+   H  P  +L +T T  AA EM  R    
Sbjct: 19  TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 73

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144
                                              L ++L TP  GL V T H  C  ++
Sbjct: 74  -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 98

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           ++   EAN+   F I D E   ++I    K  + S+ LD
Sbjct: 99  RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 133


>gi|212635558|ref|YP_002312083.1| exodeoxyribonuclease V subunit beta [Shewanella piezotolerans WP3]
 gi|212557042|gb|ACJ29496.1| Exodeoxyribonuclease V, beta subunit [Shewanella piezotolerans WP3]
          Length = 1232

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 18/144 (12%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    +RLLL +     L C     +T T AA  E+  R+ + I 
Sbjct: 39  SRLIEASAGTGKTYTIAGLYVRLLLGHGTEQALSCEQILVVTFTNAATGELRDRIRKKIQ 98

Query: 88  -AWS-----HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
            A+       + DE++S    + +     +SD + AR  L   L++     + TIH FC+
Sbjct: 99  LAYRCFIGLKVDDELISQLYNETR-----ESDKALARKRLDLALKSLDEAAIFTIHGFCQ 153

Query: 142 AIMQQFPLEANI--TSHFAIADEE 163
            I+     E+++   S F + D E
Sbjct: 154 RILADMAFESSLLFESEFTLDDSE 177


>gi|331703738|ref|YP_004400425.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802293|emb|CBW54447.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 722

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 48/189 (25%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +DL++  +   ++ +D P R   + A AGSGKT ++  ++  L+   +  P+ +L +T T
Sbjct: 7   LDLLNPQQLAAVINTDKPVR---IIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RVL+I                TK Q K P                      
Sbjct: 64  NKAAKEMKERVLQI----------------TKNQKKSP---------------------- 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--- 188
            + T HA+C  +++       +   F I D +  K++I+ A K   ++I L  N++    
Sbjct: 86  FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKE--SNIELSENDKKTFD 143

Query: 189 KKAFYEILE 197
           KK  Y+I E
Sbjct: 144 KKILYKIKE 152


>gi|300950421|ref|ZP_07164344.1| DNA helicase II [Escherichia coli MS 116-1]
 gi|300450267|gb|EFK13887.1| DNA helicase II [Escherichia coli MS 116-1]
          Length = 689

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 39/131 (29%)

Query: 41  GSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
           GSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++             
Sbjct: 1   GSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT----------- 49

Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159
                                      + GG+ V T H     +++   ++AN+   F I
Sbjct: 50  ---------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQI 82

Query: 160 ADEEQSKKLIE 170
            D E   +L++
Sbjct: 83  LDSEDQLRLLK 93


>gi|315125235|ref|YP_004067238.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913]
 gi|315013748|gb|ADT67086.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913]
          Length = 721

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 45/193 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ +  A   ++  +T
Sbjct: 4   SELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV           +E L A +                           G
Sbjct: 62  FTNKAAKEMRSRV-----------EETLKAPV---------------------------G 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+ + T H     I++    EAN+   F I D +   ++I    K  L S+ +D+ +   
Sbjct: 84  GMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKWPA 139

Query: 190 KAFYEILEISNDE 202
           K F   +    DE
Sbjct: 140 KQFGWYISAKKDE 152


>gi|313894811|ref|ZP_07828371.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976492|gb|EFR41947.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 643

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 39/139 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AG+GKT  +V R   ++     P+ +L  T T+ AA EM  RV++       L DE  
Sbjct: 31  AGAGAGKTKTIVSRTAYMIEDGVSPANILLFTFTQKAADEMRTRVIQ------ALGDE-- 82

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE-ANITSH 156
                              AR           G+ V T H+FC  +++ F    +  T+ 
Sbjct: 83  -------------------AR-----------GIFVGTYHSFCAKLLRYFQNRFSGYTNQ 112

Query: 157 FAIADEEQSKKLIEEAKKS 175
           F+I DE+ +  L+++A +S
Sbjct: 113 FSIYDEKDAMNLLKKAMRS 131


>gi|73539989|ref|YP_294509.1| UvrD/REP helicase [Ralstonia eutropha JMP134]
 gi|72117402|gb|AAZ59665.1| UvrD/REP helicase [Ralstonia eutropha JMP134]
          Length = 725

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 31/49 (63%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A AGSGKT+ L  RV  L+L  A P  +L LT ++ AAAEM  RV  I+
Sbjct: 72  AGAGSGKTNTLAHRVAHLVLNGADPRRILLLTFSRRAAAEMGRRVERIV 120


>gi|328944201|ref|ZP_08241665.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829]
 gi|327491120|gb|EGF22895.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829]
          Length = 1253

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 39/153 (25%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP---------STLLCLTHTKAAAAEMSHRVLEI 85
           +V A AGSGKT  L +RVL  L   + P         S +L +T T AAA E+  R+   
Sbjct: 37  FVEAGAGSGKTFTLTKRVLWALTKGSGPNGTAFLDDVSQVLIITFTHAAAHEIKERI--- 93

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                                    +S + +A H+    LE      + TIH+ C  I++
Sbjct: 94  -------------------------RSSLREA-HMPQQALEVDNAW-ISTIHSMCSRILK 126

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            + L+  I   F+IA E  + KL+  A +  L+
Sbjct: 127 TYALDLGIDPQFSIASENDTVKLMRRAVQDVLS 159


>gi|153216919|ref|ZP_01950683.1| DNA helicase II [Vibrio cholerae 1587]
 gi|153830867|ref|ZP_01983534.1| DNA helicase II [Vibrio cholerae 623-39]
 gi|227080412|ref|YP_002808963.1| DNA helicase II [Vibrio cholerae M66-2]
 gi|229512494|ref|ZP_04401966.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21]
 gi|262191258|ref|ZP_06049454.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
 gi|298500833|ref|ZP_07010635.1| DNA helicase II [Vibrio cholerae MAK 757]
 gi|124114039|gb|EAY32859.1| DNA helicase II [Vibrio cholerae 1587]
 gi|148873656|gb|EDL71791.1| DNA helicase II [Vibrio cholerae 623-39]
 gi|227008300|gb|ACP04512.1| DNA helicase II [Vibrio cholerae M66-2]
 gi|229350493|gb|EEO15441.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21]
 gi|262032863|gb|EEY51405.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
 gi|297540337|gb|EFH76396.1| DNA helicase II [Vibrio cholerae MAK 757]
          Length = 723

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|262172714|ref|ZP_06040392.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451]
 gi|261893790|gb|EEY39776.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451]
          Length = 723

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|254291625|ref|ZP_04962414.1| DNA helicase II [Vibrio cholerae AM-19226]
 gi|150422482|gb|EDN14440.1| DNA helicase II [Vibrio cholerae AM-19226]
          Length = 723

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|308234385|ref|ZP_07665122.1| UvrD/REP helicase [Atopobium vaginae DSM 15829]
          Length = 1248

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 39/153 (25%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP---------STLLCLTHTKAAAAEMSHRVLEI 85
           +V A AGSGKT  L +RVL  L   + P         S +L +T T AAA E+  R+   
Sbjct: 32  FVEAGAGSGKTFTLTKRVLWALTKGSGPNGTAFLDDVSQVLIITFTHAAAHEIKERI--- 88

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                                    +S + +A H+    LE      + TIH+ C  I++
Sbjct: 89  -------------------------RSSLREA-HMPQQALEVDNAW-ISTIHSMCSRILK 121

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            + L+  I   F+IA E  + KL+  A +  L+
Sbjct: 122 TYALDLGIDPQFSIASENDTVKLMRRAVQDVLS 154


>gi|262341237|ref|YP_003284092.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
          germanica) str. Bge]
 gi|262272574|gb|ACY40482.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
          germanica) str. Bge]
          Length = 860

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEII 86
          P+     +A+AGSGKT  LV+  L +LL + +P     +L LT TK A+ EM  R+L+ +
Sbjct: 4  PSTLKIYNASAGSGKTFFLVRNYLYVLLNSPYPDEFKRVLALTFTKTASEEMKKRILQCL 63

Query: 87 TAWSH 91
            +S+
Sbjct: 64 KEFSN 68


>gi|197334239|ref|YP_002154837.1| DNA helicase II [Vibrio fischeri MJ11]
 gi|197315729|gb|ACH65176.1| DNA helicase II [Vibrio fischeri MJ11]
          Length = 733

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 41/163 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        + GG+ 
Sbjct: 65  KAAAEMRGRIEELMHG--------------------------------------SAGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             T H  C  I++   L+A +   F I D +  ++L++   K+
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKA 129


>gi|153825962|ref|ZP_01978629.1| DNA helicase II [Vibrio cholerae MZO-2]
 gi|149740370|gb|EDM54506.1| DNA helicase II [Vibrio cholerae MZO-2]
          Length = 723

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|59710675|ref|YP_203451.1| DNA-dependent helicase II [Vibrio fischeri ES114]
 gi|59478776|gb|AAW84563.1| DNA-dependent ATPase I and helicase II [Vibrio fischeri ES114]
          Length = 733

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 41/163 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        + GG+ 
Sbjct: 65  KAAAEMRGRIEELMHG--------------------------------------SAGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             T H  C  I++   L+A +   F I D +  ++L++   K+
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKA 129


>gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247]
 gi|262084658|gb|ACY20626.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247]
          Length = 828

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 40/136 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL A +  P  +L +T T  AAAEM  RV++++        
Sbjct: 46  IVAGAGSGKTAVLTRRIAYLLAARDVSPGQVLAITFTNKAAAEMRERVIDLV-------- 97

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                         P  + M                  V T H+ C  I++ Q  L A +
Sbjct: 98  -------------GPRATYMW-----------------VSTFHSTCVRILRAQSGLLAGM 127

Query: 154 TSHFAIADEEQSKKLI 169
            S+F+I D + SK+L+
Sbjct: 128 NSNFSIYDADDSKRLL 143


>gi|258625863|ref|ZP_05720738.1| DNA helicase II [Vibrio mimicus VM603]
 gi|262163724|ref|ZP_06031464.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223]
 gi|258581827|gb|EEW06701.1| DNA helicase II [Vibrio mimicus VM603]
 gi|262027704|gb|EEY46369.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223]
          Length = 723

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|153004883|ref|YP_001379208.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152028456|gb|ABS26224.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 745

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 30/50 (60%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           V A AGSGKT  L  RV RLL   A P ++L LT T  AA EM  RV E+
Sbjct: 53  VVAGAGSGKTRTLTWRVARLLAEGASPESILLLTFTNKAAQEMLRRVGEV 102


>gi|302544595|ref|ZP_07296937.1| ATP-dependent DNA helicase PcrA [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462213|gb|EFL25306.1| ATP-dependent DNA helicase PcrA [Streptomyces himastatinicus ATCC
           53653]
          Length = 823

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   + HP  +L +T T  AA EM  RV E++        
Sbjct: 91  IVAGAGSGKTRVLTHRIAYLLGTRHVHPGQILAITFTNKAAGEMKERVEELV-------- 142

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 143 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 172

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 173 SSFSIYDAADSKRLM 187


>gi|239979932|ref|ZP_04702456.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
 gi|291451787|ref|ZP_06591177.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
 gi|291354736|gb|EFE81638.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
          Length = 840

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV E++        
Sbjct: 92  IVAGAGSGKTRVLTHRIAHLLGERGVHPGQILAITFTNKAAGEMKERVEELV-------- 143

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++       T
Sbjct: 144 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKHLGFT 173

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 174 SSFSIYDAADSKRLM 188


>gi|32034174|ref|ZP_00134396.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208790|ref|YP_001054015.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae L20]
 gi|126097582|gb|ABN74410.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 732

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+   +++ SH                           H L        G+ 
Sbjct: 65  KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           V T H+    +++   L+A++   F I D E
Sbjct: 91  VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121


>gi|297744967|emb|CBI38559.3| unnamed protein product [Vitis vinifera]
          Length = 951

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
          E+S+ +  ++ T+ E    SD +    + A  GSGKT  +V R+L LL     PS +L +
Sbjct: 4  EYSKYLQSLNDTQREAA-CSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILAM 62

Query: 69 THTKAAAAEMSHRVLEI 85
          T T AAA+EMS R+  +
Sbjct: 63 TFTTAAASEMSGRIAAV 79


>gi|209693834|ref|YP_002261762.1| DNA-dependent helicase II [Aliivibrio salmonicida LFI1238]
 gi|208007785|emb|CAQ77907.1| DNA helicase II UvrD [Aliivibrio salmonicida LFI1238]
          Length = 734

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 41/163 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        + GG+ 
Sbjct: 65  KAAAEMRGRIEELMHG--------------------------------------SAGGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             T H  C  I++   L+A +   F I D +  ++L++   K+
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKA 129


>gi|153800815|ref|ZP_01955401.1| DNA helicase II [Vibrio cholerae MZO-3]
 gi|229521109|ref|ZP_04410530.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80]
 gi|124123646|gb|EAY42389.1| DNA helicase II [Vibrio cholerae MZO-3]
 gi|229341994|gb|EEO06995.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80]
 gi|327483072|gb|AEA77479.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae LMA3894-4]
          Length = 723

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|58040813|ref|YP_192777.1| DNA helicase II [Gluconobacter oxydans 621H]
 gi|58003227|gb|AAW62121.1| DNA helicase II [Gluconobacter oxydans 621H]
          Length = 740

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 40/163 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCL 68
           S T + +S+   EQ  A + T     + A AG+GKT +L  R   +LL   A+PS +L +
Sbjct: 7   SPTPEYLSRLNPEQRRAIETTEGPLLILAGAGTGKTRVLTTRFAHILLTGRAYPSQILAV 66

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+                                       E  
Sbjct: 67  TFTNKAAREMRERVSAILG--------------------------------------EPA 88

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            GL + T HA C  ++++      +TS F I D +   +L+++
Sbjct: 89  EGLWLGTFHAICARMLRRHAEYVGLTSSFNILDTDDQIRLLKQ 131


>gi|229524854|ref|ZP_04414259.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis
           VL426]
 gi|229338435|gb|EEO03452.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis
           VL426]
          Length = 723

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|217076812|ref|YP_002334528.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus
           TCF52B]
 gi|217036665|gb|ACJ75187.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus
           TCF52B]
          Length = 1041

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 28/162 (17%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQ---RVLRLLLANAHP---STLLCLTHTKAAAAEMS 79
           +  D  ++ ++SA+AG+GKT  +      +L+      +P     ++ +T T+ AAAEM 
Sbjct: 7   IRKDINKNYFISASAGTGKTFTITNYYVEILKKYEKENYPEIVDEIVVVTFTRKAAAEMK 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+++++      S                NK   SK ++ L   +       + TI +F
Sbjct: 67  ERIVKLVNEEFSQS---------------KNKEYWSKVKNNLSRAI-------ISTIDSF 104

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           C+ I+++  + A I   F+I    + +K IE A   TL  + 
Sbjct: 105 CQRILREENINAKIDPSFSIISNAKMEKYIERAVFLTLRYVF 146


>gi|121587578|ref|ZP_01677344.1| DNA helicase II [Vibrio cholerae 2740-80]
 gi|229527306|ref|ZP_04416699.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)]
 gi|121548216|gb|EAX58286.1| DNA helicase II [Vibrio cholerae 2740-80]
 gi|229335314|gb|EEO00798.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)]
          Length = 723

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|15640220|ref|NP_229847.1| DNA-dependent helicase II [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121728028|ref|ZP_01681067.1| DNA helicase II [Vibrio cholerae V52]
 gi|147675309|ref|YP_001218450.1| DNA-dependent helicase II [Vibrio cholerae O395]
 gi|153818562|ref|ZP_01971229.1| DNA helicase II [Vibrio cholerae NCTC 8457]
 gi|153821587|ref|ZP_01974254.1| DNA helicase II [Vibrio cholerae B33]
 gi|229507007|ref|ZP_04396515.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286]
 gi|229509377|ref|ZP_04398860.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33]
 gi|229516324|ref|ZP_04405772.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9]
 gi|229606515|ref|YP_002877163.1| DNA-dependent helicase II [Vibrio cholerae MJ-1236]
 gi|254226330|ref|ZP_04919920.1| DNA helicase II [Vibrio cholerae V51]
 gi|254851318|ref|ZP_05240668.1| DNA-dependent helicase II [Vibrio cholerae MO10]
 gi|255744002|ref|ZP_05417956.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101]
 gi|262153639|ref|ZP_06028766.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1]
 gi|262167390|ref|ZP_06035098.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27]
 gi|9654595|gb|AAF93366.1| DNA helicase II [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121629731|gb|EAX62150.1| DNA helicase II [Vibrio cholerae V52]
 gi|125621135|gb|EAZ49479.1| DNA helicase II [Vibrio cholerae V51]
 gi|126510901|gb|EAZ73495.1| DNA helicase II [Vibrio cholerae NCTC 8457]
 gi|126520874|gb|EAZ78097.1| DNA helicase II [Vibrio cholerae B33]
 gi|146317192|gb|ABQ21731.1| DNA helicase II [Vibrio cholerae O395]
 gi|227012037|gb|ACP08247.1| DNA helicase II [Vibrio cholerae O395]
 gi|229346750|gb|EEO11720.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9]
 gi|229353692|gb|EEO18629.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33]
 gi|229356112|gb|EEO21031.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286]
 gi|229369170|gb|ACQ59593.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae MJ-1236]
 gi|254847023|gb|EET25437.1| DNA-dependent helicase II [Vibrio cholerae MO10]
 gi|255738267|gb|EET93658.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101]
 gi|262024192|gb|EEY42885.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27]
 gi|262030580|gb|EEY49217.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1]
          Length = 723

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|262404930|ref|ZP_06081482.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586]
 gi|262348769|gb|EEY97910.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586]
          Length = 723

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|68536650|ref|YP_251355.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
 gi|68264249|emb|CAI37737.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
          Length = 830

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT +L +R+  LL     P  +L +T T  AAAEM  RV++++         
Sbjct: 34  IVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTNKAAAEMRERVMDMV--------- 84

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANIT 154
                        P    M                  V T H+FC  +++    L   + 
Sbjct: 85  ------------GPQAERMW-----------------VSTFHSFCVRVLRANAHLAPGLN 115

Query: 155 SHFAIADEEQSKKLI 169
           ++F+I D + SK+L+
Sbjct: 116 TNFSIYDSDDSKRLM 130


>gi|297581630|ref|ZP_06943552.1| DNA helicase II [Vibrio cholerae RC385]
 gi|297534037|gb|EFH72876.1| DNA helicase II [Vibrio cholerae RC385]
          Length = 723

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|284036711|ref|YP_003386641.1| exodeoxyribonuclease V [Spirosoma linguale DSM 74]
 gi|283816004|gb|ADB37842.1| Exodeoxyribonuclease V [Spirosoma linguale DSM 74]
          Length = 1120

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 15/165 (9%)

Query: 37  SANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           S++AGSGKT+ L +  L+L L     + +   +L +T T AAA EM +R+L+ ++  +  
Sbjct: 6   SSSAGSGKTYTLTKEYLKLALRPGEKDDYFRRILAVTFTNAAANEMKNRILKNLSEMAGK 65

Query: 93  SDEILSAEITKIQGKKPNKSDM---------SKARHLLITILETPGGLKVQTIHAFCEAI 143
            +  L  E+       P  SD+         S+A  +  TIL       V TI +F + +
Sbjct: 66  KESPLLNELVTELYDTPPGSDLFEDKKTELCSRASSVFRTILHRYADFSVTTIDSFTQRV 125

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +  F  E  +   F +  E  + +++E A  + +     D  EE+
Sbjct: 126 VMAFTDELGLPYSFDV--EMDTDEVLELAIDNLIEKAGTDEMEEI 168


>gi|261213182|ref|ZP_05927465.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341]
 gi|260837600|gb|EEX64294.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341]
          Length = 723

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        T  G+ 
Sbjct: 66  KAAAEMRGRIEELMHG--------------------------------------TASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125


>gi|308270800|emb|CBX27410.1| hypothetical protein N47_H22320 [uncultured Desulfobacterium sp.]
          Length = 657

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 38/142 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  L  RV RL+     P+++L LT T+ A+ EM                 
Sbjct: 37  VIAGAGSGKTRTLTYRVARLVEEGTPPASILLLTFTRKASQEM----------------- 79

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                             +++A +LL    E   G+   T H+F   I++++       S
Sbjct: 80  ------------------LNRATNLLDKRCE---GVSGGTFHSFANYILRRYSRYIGFDS 118

Query: 156 HFAIADEEQSKKLIEEAKKSTL 177
            F I D + S+ LI   +K  L
Sbjct: 119 GFNILDRDDSEALIGIVRKEML 140


>gi|323357219|ref|YP_004223615.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273590|dbj|BAJ73735.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 826

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL    A+PS +L +T T  AA EM  RV ++I        
Sbjct: 56  IVAGAGSGKTSVLTRRIASLLRTREAYPSQILAITFTNKAAGEMRERVHQLI-------- 107

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G+K +                   G+ + T H+ C  I+++   +   T
Sbjct: 108 -----------GQKAD-------------------GMWISTFHSACVRILRREAEQFGFT 137

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D   S+ LI+   K
Sbjct: 138 KAFTIYDSGDSRALIKRLVK 157


>gi|260770702|ref|ZP_05879632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972]
 gi|260614283|gb|EEX39472.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972]
 gi|315178541|gb|ADT85455.1| DNA-dependent helicase II [Vibrio furnissii NCTC 11218]
          Length = 724

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 66  KAAAEMRGRIDEL--------------------------------------MMGSSSGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125


>gi|227431965|ref|ZP_03913985.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352250|gb|EEJ42456.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 1230

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK++Q    +   +  V+A+AGSGKT +L++R+++ +L+       L +T T AAA EM 
Sbjct: 6   TKNQQRAIEEKGHNILVAASAGSGKTTVLIERLIQKILSGVSVEKFLIVTFTNAAAKEMR 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R LE+                     K+   +D S+ R L   +L  P    + TI A+
Sbjct: 66  ER-LEVAIE------------------KRLKVADESQKRFLQEQLLILPAA-NISTIDAY 105

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              I++ +     +   F +  +   +KL+++     LA ++ D  +E
Sbjct: 106 ALRIIEIYYHVIGLDPQFRLLSDTAERKLLQQ---DVLADVLADFYDE 150


>gi|302553643|ref|ZP_07305985.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
 gi|302471261|gb|EFL34354.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
          Length = 826

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   + HP  +L +T T  AA EM  RV +++        
Sbjct: 90  IVAGAGSGKTRVLTHRIAHLLAERDVHPGQILAITFTNKAAGEMKERVEQLV-------- 141

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 172 SSFSIYDAADSKRLM 186


>gi|217979456|ref|YP_002363603.1| UvrD/REP helicase [Methylocella silvestris BL2]
 gi|217504832|gb|ACK52241.1| UvrD/REP helicase [Methylocella silvestris BL2]
          Length = 694

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT+ L  RV  L++  AHP  +L +T ++ AAAEM+ RV
Sbjct: 41 AGAGSGKTNTLAHRVAHLIVNGAHPHRILLMTFSRRAAAEMTRRV 85


>gi|294637961|ref|ZP_06716228.1| DNA helicase II [Edwardsiella tarda ATCC 23685]
 gi|291088893|gb|EFE21454.1| DNA helicase II [Edwardsiella tarda ATCC 23685]
          Length = 720

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  LL +    P +++ +T T  AAAEM HR+  +I  
Sbjct: 21  PRSNLLVLAGAGSGKTRVLVHRIAWLLAVEQCSPFSIMAVTFTNKAAAEMRHRIEALIGT 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ + T H     +++   
Sbjct: 81  --------------------------------------SQGGMWIGTFHGLAHRLLRAHH 102

Query: 149 LEANITSHFAIADEEQSKKLIE 170
           L+A +   F I D E   +L++
Sbjct: 103 LDAGLPQDFQILDSEDQLRLLK 124


>gi|210623665|ref|ZP_03293974.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275]
 gi|210153430|gb|EEA84436.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275]
          Length = 1256

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 34/188 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R++ ++L           L +T T AAA+EM  R+ + I+     
Sbjct: 23  VSAAAGSGKTAVLVERIISMILDTEEKVDIDKFLVVTFTNAAASEMRERIGDAIS----- 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                    T ++ K P+   + K    L           + TIH+FC  +++       
Sbjct: 78  ---------TALE-KDPSNEHLQKQILFL-------NKANITTIHSFCLDVIKNNIHLIT 120

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI-----MLDNNEELKKAFYEIL----EISNDED 203
           +  +F I D  + + + +EA       +     + D N E  K F +++    E + D  
Sbjct: 121 LDPNFRIGDTTECQLIAQEAIDEVFEELYEQGYLGDENSEKGKRFLKLIDSFAERNGDNQ 180

Query: 204 IETLISDI 211
           +++LI  I
Sbjct: 181 VQSLIMSI 188


>gi|325954156|ref|YP_004237816.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
 gi|323436774|gb|ADX67238.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
          Length = 1033

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 19/171 (11%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVL----EIITAW 89
           +A+AG+GKT+ LV+ +L +LL N+  +    +L +T T  AA EM  R+L    E+    
Sbjct: 11  NASAGAGKTYTLVRNLLIILLQNSRDNWFEYILAITFTNKAANEMKERILLNLKELADPT 70

Query: 90  SHLSDEILS-AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              +D I   A+ TK+   +  +    KA  +L +IL       + TI  F   +++ F 
Sbjct: 71  KKQNDYIQGIAKDTKLSIDEIQQ----KAHRILTSILHNYSKFSISTIDKFNLRLIKSFA 126

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            +  ++  F +  E   K LIEEA     + I  D  EEL ++   IL++S
Sbjct: 127 QDLGLSMSFDV--EMDVKTLIEEAVNLVYSKIGKD--EELTES---ILDMS 170


>gi|291320248|ref|YP_003515509.1| ATP dependent helicase [Mycoplasma agalactiae]
 gi|290752580|emb|CBH40552.1| ATP dependent helicase [Mycoplasma agalactiae]
          Length = 734

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 41/160 (25%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +++ ++E L   D P R   + A AGSGKT +L +++  L+ +    P  +L +T T  A
Sbjct: 18  LNEEQTEALYYFDGPLR---IIAGAGSGKTRVLTRKIAYLINVLGISPDHILAVTFTNKA 74

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EMS RV +                       K NK                 G  ++ 
Sbjct: 75  ASEMSERVKQYTNT-------------------KFNK-----------------GTAEIS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+ C  I+++     N+ + F I D+   KK++++  K
Sbjct: 99  TFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDIYK 138


>gi|148377565|ref|YP_001256441.1| ATP-dependent helicase [Mycoplasma agalactiae PG2]
 gi|148291611|emb|CAL58997.1| ATP dependent helicase [Mycoplasma agalactiae PG2]
          Length = 734

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 41/160 (25%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +++ ++E L   D P R   + A AGSGKT +L +++  L+ +    P  +L +T T  A
Sbjct: 18  LNEEETEALYYFDGPLR---IIAGAGSGKTRVLTRKIAYLINVLGISPDHILAVTFTNKA 74

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EMS RV +                       K NK                 G  ++ 
Sbjct: 75  ASEMSERVKQYTNT-------------------KFNK-----------------GTAEIS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+ C  I+++     N+ + F I D+   KK++++  K
Sbjct: 99  TFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDIYK 138


>gi|118575660|ref|YP_875403.1| superfamily I helicase [Cenarchaeum symbiosum A]
 gi|118194181|gb|ABK77099.1| superfamily I helicase [Cenarchaeum symbiosum A]
          Length = 977

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A  GSGKT ++V+RVL ++   A P  +LCLT ++ AA EM  R+ E I
Sbjct: 20 VRAGPGSGKTRVIVERVLHMVRNGADPGRILCLTFSEKAAGEMLGRLKESI 70


>gi|27380604|ref|NP_772133.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27353769|dbj|BAC50758.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 685

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT+ L  RV  L++A A P  +L +T ++ AAAEM+ RV  I
Sbjct: 32 VIAGAGSGKTNTLAHRVAHLIVAGADPRRILLMTFSRRAAAEMAGRVERI 81


>gi|222637066|gb|EEE67198.1| hypothetical protein OsJ_24304 [Oryza sativa Japonica Group]
          Length = 1186

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 44/179 (24%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  +   SD T    + A  GSGKT  +V RVL LL     PS +L +T T AAA+EM  
Sbjct: 290 RQREAACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNILAMTFTTAAASEMRD 349

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+  ++                   GK       + A+ ++I+           T H+FC
Sbjct: 350 RIGTVV-------------------GK-------AVAKEIVIS-----------TFHSFC 372

Query: 141 EAIMQQFPLEANITSHFAIADEEQSK-------KLIEEAKKSTLASIMLDNNEELKKAF 192
             + +    +   TS F I    Q +       +L+E  K + L     + + ++K +F
Sbjct: 373 LQLCRTHAEKLGRTSEFIIYGNGQQRRAVIEAERLLESDKNNGLGDANKNCDGDIKNSF 431


>gi|148826204|ref|YP_001290957.1| DNA-dependent helicase II [Haemophilus influenzae PittEE]
 gi|229846218|ref|ZP_04466330.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1]
 gi|148716364|gb|ABQ98574.1| DNA helicase II [Haemophilus influenzae PittEE]
 gi|229811222|gb|EEP46939.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1]
          Length = 726

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 39/162 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4   SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETP 128
            T  AAAEM HR+                            +S ++K A+H L       
Sbjct: 62  FTNKAAAEMRHRI----------------------------QSTLAKHAQHQLF------ 87

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            G+ + T H+    +++   L+  +   F I D E  ++LI+
Sbjct: 88  -GMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLIK 128


>gi|254467915|ref|ZP_05081321.1| UvrD/REP helicase, putative [beta proteobacterium KB13]
 gi|207086725|gb|EDZ64008.1| UvrD/REP helicase, putative [beta proteobacterium KB13]
          Length = 1015

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 29/128 (22%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           +S  V A AGSGKT +L QR ++LL     P  +L +T T  AAAEM +R    IT +  
Sbjct: 16  KSIIVQAPAGSGKTELLTQRFIKLLAHVNSPREILAVTFTNKAAAEMKNR----ITNY-- 69

Query: 92  LSDEILSAEITKIQGKKPNKSDMSK----------ARHLLITILETPGGLKVQTIHAFCE 141
                       +Q K   K+D +K          AR   IT+ E      + TI A  +
Sbjct: 70  ------------LQNKTTPKNDTTKKLIDLLNKEIARR-GITVDEIISEFNILTIDALNQ 116

Query: 142 AIMQQFPL 149
            I+   PL
Sbjct: 117 QIINSTPL 124


>gi|315126291|ref|YP_004068294.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas sp.
           SM9913]
 gi|315014805|gb|ADT68143.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas sp.
           SM9913]
          Length = 1188

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTL---------LCLTHTKAAAAEMSHRVL-EI 85
           + A+AG+GKT+ +    LR LL    P  L         L +T T AA  E+  RV   I
Sbjct: 17  IEASAGTGKTYTITGLYLRYLLGMQIPGELSTPLSVEQILVVTFTDAATQEIKDRVRSRI 76

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I A   L  ++ + E+  I+G      D  +A  LL    ++     + TIH FC+ +++
Sbjct: 77  IAARDALLGQVPNDEL--IEGVIAGVDDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134

Query: 146 QFPLEANI 153
           Q   E+ +
Sbjct: 135 QHAFESGV 142


>gi|302346510|ref|YP_003814808.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica
           ATCC 25845]
 gi|302150595|gb|ADK96856.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica
           ATCC 25845]
          Length = 851

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 51/178 (28%)

Query: 16  LISQTKSEQLLAS--DPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           +I+Q K E +L++  +  R A         V A AGSGKT +L  ++  LL     P  +
Sbjct: 1   MINQDKEEAILSALNESQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLKPWNI 60

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT T  AA EM  R+ +I TA                            A+HL +   
Sbjct: 61  LALTFTNKAAREMKERIAQITTA--------------------------KDAQHLYMG-- 92

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                    T H+    I+++        S+F I DE  S+ LI    KS + ++ LD
Sbjct: 93  ---------TFHSIFARILRREGEAIGFGSNFTIYDENDSRSLI----KSIVKALDLD 137


>gi|254455522|ref|ZP_05068951.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082524|gb|EDZ59950.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211]
          Length = 678

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 42/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
           +S+ +D ++  + E +L  D      + A AGSGKT +L  R+  ++    A P+ +L +
Sbjct: 3   NSDYLDNLNNAQKEAVLHVDG--PLLIVAGAGSGKTKVLTSRIAHIIKKKKAFPNQILSV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV +I+ +                                      T 
Sbjct: 61  TFTNKAAKEMQTRVSKILGS--------------------------------------TA 82

Query: 129 GGLK-VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            GL  + T H+ C  I+++    AN+ S+F I D +   +LI+   KS
Sbjct: 83  TGLSWLGTFHSICVKILRKHAKAANLNSNFTIIDTDDQIRLIKNICKS 130


>gi|323494180|ref|ZP_08099295.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546]
 gi|323311574|gb|EGA64723.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546]
          Length = 723

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 65  KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  I++   L+A +   F I D +  ++L+
Sbjct: 87  NGTFHGICHRILRAHYLDAQLPEDFQIIDSDDQQRLL 123


>gi|225454963|ref|XP_002277737.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1151

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           E+S+ +  ++ T+ E    SD +    + A  GSGKT  +V R+L LL     PS +L +
Sbjct: 244 EYSKYLQSLNDTQRE-AACSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILAM 302

Query: 69  THTKAAAAEMSHRVLEI 85
           T T AAA+EMS R+  +
Sbjct: 303 TFTTAAASEMSGRIAAV 319


>gi|313898067|ref|ZP_07831606.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2]
 gi|312957095|gb|EFR38724.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2]
          Length = 763

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 39/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  R+  L+     +P+ +L +T T  AA EM  RV  ++          
Sbjct: 26  AGAGSGKTRVVTTRIAYLINDCGVYPNKVLAITFTNKAAREMKERVENLL---------- 75

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                           D++KA             + + TIH+FC  ++++  LE     +
Sbjct: 76  ---------------GDVAKA-------------VTISTIHSFCVRLLREDILELGYPRN 107

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D +  K ++ +A K
Sbjct: 108 FTILDADDQKSILRDAYK 125


>gi|149371101|ref|ZP_01890696.1| ATP-dependent helicase [unidentified eubacterium SCB49]
 gi|149355887|gb|EDM44445.1| ATP-dependent helicase [unidentified eubacterium SCB49]
          Length = 1056

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 24/145 (16%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           P+      A AGSGKT+ LV+R L  LL    N++   LL LT T  A AEM  R++  +
Sbjct: 4   PSPFFIYDAAAGSGKTYSLVKRYLSTLLQQPKNSYYRQLLALTFTNKAVAEMKERIVNSL 63

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMS------------KARHLLITILETPGGLKVQ 134
             +         A+   I+   P   D++            +A  +L  +L       V+
Sbjct: 64  ITF---------ADKQVIKDPPPMFLDIAETLELEPLVIQQRANDILTQLLHNYAAFSVE 114

Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159
           TI +F   +++ F  +  + S+F +
Sbjct: 115 TIDSFNHRLIRTFSKDLKLPSNFEV 139


>gi|254478432|ref|ZP_05091809.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653]
 gi|214035603|gb|EEB76300.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653]
          Length = 1184

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 38/208 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW--S 90
           ++A AGSGKT +LV+R++ ++     P     LL +T T AAA+EM  R+ E + +    
Sbjct: 1   MAAAAGSGKTAVLVERIINIVTDPEKPVDIDRLLVVTFTNAAASEMRERIAERLISLLDQ 60

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           H  D+ L+ ++T +     NK+ ++                   TIH+FC  ++++    
Sbjct: 61  HPEDKRLADQLTLL-----NKATIT-------------------TIHSFCLDVVRKHFFL 96

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
            ++   F + D+ ++  L  EA +     +   N+E     F  ++E       +  + D
Sbjct: 97  LDLDPSFRVGDDTETLLLKLEAMEELFEELYEKNDE----GFLLLVESYGGTKGDQYLQD 152

Query: 211 IISNRTALKLIFFFFSYLWRRKIIEKSL 238
           ++     LKL  F  S  W  K +   L
Sbjct: 153 VL-----LKLYGFIRSLPWPEKWLNDVL 175


>gi|182436526|ref|YP_001824245.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326777148|ref|ZP_08236413.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465042|dbj|BAG19562.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657481|gb|EGE42327.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 813

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++        
Sbjct: 87  IVAGAGSGKTRVLTHRIAHLLAERGTHPGQILAITFTNKAAGEMKERVEQLV-------- 138

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 139 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 168

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 169 SSFSIYDAADSKRLM 183


>gi|320531567|ref|ZP_08032515.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136218|gb|EFW28218.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 692

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 43/135 (31%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+ RL+    A P  +L +T T  AAAEM  RV              
Sbjct: 8   AGAGSGKTRVLTHRIARLIATGRARPGEILAITFTNKAAAEMRERV-------------- 53

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEANIT 154
                                     T L  P G +  V T H+ C  I+++    A + 
Sbjct: 54  --------------------------TALVGPAGERMWVSTFHSACVRILRREHEAAGLR 87

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   S +LI
Sbjct: 88  STFSIYDAADSTRLI 102


>gi|167623786|ref|YP_001674080.1| exodeoxyribonuclease V subunit beta [Shewanella halifaxensis
           HAW-EB4]
 gi|167353808|gb|ABZ76421.1| exodeoxyribonuclease V, beta subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 1240

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT  +    +RLLL +   S L C     +T T AA  E+  R+ + I 
Sbjct: 36  SRLIEASAGTGKTFTIAGLYVRLLLGHGIESPLTCEQILVVTFTNAATGELRDRIRKKIQ 95

Query: 88  -AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A+       +  E+        ++S+++ AR  L   L++     + TIH FC+ I+  
Sbjct: 96  LAYRRFIGLEVDDELINALYAATDESELAIARKRLDLALKSLDEAAIFTIHGFCQRILAD 155

Query: 147 FPLEANI--TSHFAIADEE 163
              E+++   S F + D E
Sbjct: 156 MAFESSLLFESEFTLDDSE 174


>gi|288927884|ref|ZP_06421731.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330718|gb|EFC69302.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 1075

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL-SD 94
           A+AGSGKT  L    +++LL N H    +L +T T  A  EM  R+L ++   W  L S 
Sbjct: 11  ASAGSGKTFTLAVNYIKILLNNPHSYRNILAVTFTNKATEEMKLRILSQLYGIWKLLPSS 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           +    +IT   G  P  +   +A   L  +L      +V+TI  F +A+++    E ++T
Sbjct: 71  KGYLDKITNELGISPEYAS-QQAGTALSNLLHNYNYFRVETIDTFFQAVLRNLARELDLT 129

Query: 155 S--HFAIAD---EEQS-KKLIEE 171
           +  H  + D   E+Q+  KLIE+
Sbjct: 130 ANLHVGLNDSQVEQQAVDKLIED 152


>gi|330470059|ref|YP_004407802.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032]
 gi|328813030|gb|AEB47202.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032]
          Length = 797

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A + HP  ++ +T T  AA EM  RV +++   + L  
Sbjct: 53  IVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVAKLVGPRARL-- 110

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I++     A + 
Sbjct: 111 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 134

Query: 155 SHFAIADEEQSKKLIE 170
           S F+I D + S++L++
Sbjct: 135 STFSIYDADDSRRLMQ 150


>gi|150020318|ref|YP_001305672.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
 gi|149792839|gb|ABR30287.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
          Length = 1003

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 35/151 (23%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHP---STLLCLTHTKAAAAEMSHRV 82
           D  ++ ++SA+AG+GKT+ +    +++L       +P     ++  T TK AAAEM  R+
Sbjct: 9   DINKNYFISASAGTGKTYTITHFYVKILSEYEKQNYPEIIDRIVVTTFTKKAAAEMKERI 68

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCE 141
            +++                     +P+ S    K ++ L      P  + + TI +FC+
Sbjct: 69  FKLV---------------------EPHNSPYWHKVKNYL------PRAI-ISTIDSFCQ 100

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            ++++  + ANI  +F I  + +  KLI+ A
Sbjct: 101 RLLREENINANIDPNFTIISDLKMSKLIDRA 131


>gi|254230196|ref|ZP_04923589.1| DNA helicase II [Vibrio sp. Ex25]
 gi|262392860|ref|YP_003284714.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25]
 gi|151937281|gb|EDN56146.1| DNA helicase II [Vibrio sp. Ex25]
 gi|262336454|gb|ACY50249.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25]
          Length = 724

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 66  KAAAEMRGRIEEL--------------------------------------MMGSASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125


>gi|239616541|ref|YP_002939863.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1]
 gi|239505372|gb|ACR78859.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1]
          Length = 652

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 38/138 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A  GSGKT ++  ++  L+ +  +P  +L +T T+AA+ EM  R              
Sbjct: 36  IVAGPGSGKTRVITFKIAYLVSSGVNPQNILLVTFTRAASREMIER-------------- 81

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                      ++ + SD+               G+   T H  C   ++++     I+S
Sbjct: 82  ----------ARRVSGSDLR--------------GMLAGTFHHVCNHFLRKYATHLGISS 117

Query: 156 HFAIADEEQSKKLIEEAK 173
            F I D E SK LI+  K
Sbjct: 118 DFTILDREDSKDLIKHCK 135


>gi|115472169|ref|NP_001059683.1| Os07g0492100 [Oryza sativa Japonica Group]
 gi|34393626|dbj|BAC83302.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group]
 gi|50508450|dbj|BAD30552.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group]
 gi|113611219|dbj|BAF21597.1| Os07g0492100 [Oryza sativa Japonica Group]
 gi|218199642|gb|EEC82069.1| hypothetical protein OsI_26061 [Oryza sativa Indica Group]
          Length = 1165

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 37/154 (24%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  +   SD T    + A  GSGKT  +V RVL LL     PS +L +T T AAA+EM  
Sbjct: 290 RQREAACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNILAMTFTTAAASEMRD 349

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+  ++                   GK       + A+ ++I+           T H+FC
Sbjct: 350 RIGTVV-------------------GK-------AVAKEIVIS-----------TFHSFC 372

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             + +    +   TS F I    Q ++ + EA++
Sbjct: 373 LQLCRTHAEKLGRTSEFIIYGNGQQRRAVIEAER 406


>gi|332045229|gb|EGI81422.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4]
          Length = 1052

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 8/130 (6%)

Query: 37  SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS--H 91
           +A+AGSGKT+ LV+  L++L    +N     +L +T T  A  EM  R+LE++  +S  H
Sbjct: 11  NASAGSGKTYTLVKEYLKILFSTSSNYQFKNILAITFTNKAVGEMKARILEMLNVFSSTH 70

Query: 92  LSDE--ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             +E   +  +I + + +  +K+   KA  +L TI+       + TI  F   +++ F  
Sbjct: 71  NLNEPHAMFFDIAQ-ELEMEHKALQKKAEIILQTIMHNYAAFDISTIDGFNHRLIRTFAH 129

Query: 150 EANITSHFAI 159
           +  +  +F +
Sbjct: 130 DLKLPLNFEV 139


>gi|319937196|ref|ZP_08011603.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
 gi|319807562|gb|EFW04155.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
          Length = 715

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV+ ++  ++      
Sbjct: 26  AGAGSGKTRVLTYRIAYLIEEVGIEPRHILAITFTNKAANEMKERVIGLLGDYA------ 79

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                           GG  + TIH+ C  I++Q     N  ++
Sbjct: 80  --------------------------------GGSLLCTIHSLCVRILRQNIRALNYPNN 107

Query: 157 FAIADEEQSKKLIEE 171
           F I DEE  K L+++
Sbjct: 108 FIIMDEEDQKSLLKK 122


>gi|226358112|ref|YP_002787851.1| ATP-dependent nuclease subunit A (AddA),; UvrD/REP helicase,;
          ATP-dependent exoDNAse (Exonuclease V) beta subunit
          (RecB) [Deinococcus deserti VCD115]
 gi|226319755|gb|ACO47749.1| putative ATP-dependent nuclease subunit A (AddA),; putative
          UvrD/REP helicase,; putative ATP-dependent exoDNAse
          (Exonuclease V) beta subunit (RecB) [Deinococcus
          deserti VCD115]
          Length = 114

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          S  +SA AGSGKT +L +R+L L+     P  ++ +T T+AAAAE+  R+   + A
Sbjct: 26 SVAISAGAGSGKTRVLAERILNLVQLGVDPGQIVAVTFTEAAAAELRERITRFVEA 81


>gi|320157772|ref|YP_004190151.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O]
 gi|319933084|gb|ADV87948.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O]
          Length = 724

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++   S                                       G+ 
Sbjct: 66  KAAAEMRGRIEELMMGSSS--------------------------------------GMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125


>gi|27364389|ref|NP_759917.1| DNA-dependent helicase II [Vibrio vulnificus CMCP6]
 gi|37681375|ref|NP_935984.1| DNA-dependent helicase II [Vibrio vulnificus YJ016]
 gi|27360508|gb|AAO09444.1| DNA helicase II [Vibrio vulnificus CMCP6]
 gi|37200127|dbj|BAC95955.1| DNA helicase II [Vibrio vulnificus YJ016]
          Length = 724

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 66  KAAAEMRGRIEEL--------------------------------------MMGSASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125


>gi|307730566|ref|YP_003907790.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307585101|gb|ADN58499.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 812

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 33/53 (62%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           V A AGSGKT+ L  RV  L++  A P  +L LT ++ AA EM+ RV  I TA
Sbjct: 75  VIAGAGSGKTNTLAHRVANLVVKGADPRRILLLTFSRRAAQEMTRRVTRIATA 127


>gi|307320004|ref|ZP_07599426.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|306894381|gb|EFN25145.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
          Length = 689

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 29/132 (21%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEMS RV            E +
Sbjct: 37  AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMSRRV------------ERI 84

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
            A++            + ++  ++   L   G     T H     +++ +  +  + + F
Sbjct: 85  CAQV------------LGRSSGMMTDALSWAG-----TFHGIGARLLRIYAEQIGLNAEF 127

Query: 158 AIADEEQSKKLI 169
            I D E S  LI
Sbjct: 128 TIHDREDSADLI 139


>gi|328471315|gb|EGF42214.1| DNA-dependent helicase II [Vibrio parahaemolyticus 10329]
          Length = 723

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 65  KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 124


>gi|145596329|ref|YP_001160626.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440]
 gi|145305666|gb|ABP56248.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440]
          Length = 795

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A   HP  ++ +T T  AA EM  RV +++   + L  
Sbjct: 53  IVAGAGSGKTRVLTHRIAYLLAARQVHPGEIIAITFTNKAAGEMKERVAQLVGPRARL-- 110

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I++     A + 
Sbjct: 111 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 134

Query: 155 SHFAIADEEQSKKLIE 170
           S F+I D + S++L++
Sbjct: 135 STFSIYDADDSRRLMQ 150


>gi|309777085|ref|ZP_07672051.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915155|gb|EFP60929.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 715

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 39/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  R+  L+     +P+ +L +T T  AA EM  RV  ++          
Sbjct: 26  AGAGSGKTRVVTTRIAYLINNCGVYPNKVLAITFTNKAAREMKERVEALL---------- 75

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                           D++KA             + + TIH+FC  ++++  LE     +
Sbjct: 76  ---------------GDVAKA-------------VTISTIHSFCVRLLREDILELGYPRN 107

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D +  K ++ +A K
Sbjct: 108 FTILDSDDQKSILRDAYK 125


>gi|227500430|ref|ZP_03930492.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC
           35098]
 gi|227217493|gb|EEI82812.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC
           35098]
          Length = 1121

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 23/155 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
           TK ++L  +   ++  VSA AGSGKT +LV R+++L+  +    +  + +T T  A+ EM
Sbjct: 7   TKDQELAINARGKNIIVSAAAGSGKTSVLVTRIIKLITEDKEDIAKFIIVTFTNKASVEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + +     L D+   A+++ I      K  M   +H            +++T+H+
Sbjct: 67  KDRIRKALE--DKLRDK--DADLSFI------KEQMKNLKH-----------AQIKTLHS 105

Query: 139 FCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEA 172
           FC  ++++ F    +++ +F +  +  S  L  EA
Sbjct: 106 FCSDMLRENFYYFDDLSPNFKVISDNTSTILKAEA 140


>gi|16263702|ref|NP_436495.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021]
 gi|14524418|gb|AAK65907.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021]
          Length = 689

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 29/132 (21%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEMS RV            E +
Sbjct: 37  AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMSRRV------------ERI 84

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
            A++            + ++  ++   L   G     T H     +++ +  +  + + F
Sbjct: 85  CAQV------------LGRSSGMMTDALSWAG-----TFHGIGARLLRIYAEQIGLNAEF 127

Query: 158 AIADEEQSKKLI 169
            I D E S  LI
Sbjct: 128 TIHDREDSADLI 139


>gi|159039726|ref|YP_001538979.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205]
 gi|157918561|gb|ABV99988.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205]
          Length = 794

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A   HP  ++ +T T  AA EM  RV +++   + L  
Sbjct: 53  IVAGAGSGKTRVLTHRIAYLLAARQVHPGEIIAITFTNKAAGEMKDRVAQLVGPRARL-- 110

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I++     A + 
Sbjct: 111 ------------------------------------MWVSTFHSACVRILRAEHEHAGVK 134

Query: 155 SHFAIADEEQSKKLIE 170
           S F+I D + S++L++
Sbjct: 135 STFSIYDADDSRRLMQ 150


>gi|240142082|ref|YP_002966592.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
          AM1]
 gi|240012026|gb|ACS43251.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
          AM1]
          Length = 666

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
          H+  +  ++  +   +LAS+P     V A AGSGKT  L +R+ RL+L    P  +L +T
Sbjct: 15 HARILSGLNDQQQAVVLASEP--DVAVVAGAGSGKTETLTRRIARLVLDGVDPERILAIT 72

Query: 70 HTKAAAAEMSHR 81
           TK AA  M  R
Sbjct: 73 FTKQAAQNMRDR 84


>gi|311896487|dbj|BAJ28895.1| putative ATP-dependent DNA helicase PcrA [Kitasatospora setae
           KM-6054]
          Length = 885

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 56/224 (25%)

Query: 24  QLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           QLL   +DP R A         + A AGSGKT +L  R+  LL A    P  +L +T T 
Sbjct: 100 QLLEGMNDPQREAVLHAGSPLLIVAGAGSGKTRVLTHRIAHLLAARGVQPGEILAITFTN 159

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                            +KA             + 
Sbjct: 160 KAAGEMRERVEALV-------------------------GPRAKA-------------MW 181

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I+++   +  + S F+I D   S++L+    +     + LD  +   K+F
Sbjct: 182 VSTFHSACVRILRREAKQLGMNSSFSIYDSADSQRLMALVCR----DLDLDPKQFPPKSF 237

Query: 193 Y-EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +I  + N+   E   +D  SN T  KL   +F  L++R++ E
Sbjct: 238 TSKISNLKNELIDEETYADQASNPTEKKLAEAYF--LYQRRLRE 279


>gi|330879358|gb|EGH13507.1| UvrD/REP helicase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 564

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           S+Q+ AS       + A  G+GKT  LVQRV +L+L    PS +L LT +  AA+E+S R
Sbjct: 203 SQQVAASHRDSPFQLQAGPGTGKTRTLVQRVEKLILDGEDPSAILVLTFSNKAASELSER 262

Query: 82  V 82
           +
Sbjct: 263 I 263


>gi|307300863|ref|ZP_07580638.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
 gi|306904397|gb|EFN34982.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
          Length = 689

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 29/132 (21%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEMS RV            E +
Sbjct: 37  AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMSRRV------------ERI 84

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
            A++            + ++  ++   L   G     T H     +++ +  +  + + F
Sbjct: 85  CAQV------------LGRSSGMMTDALSWAG-----TFHGIGARLLRIYAEQIGLNAEF 127

Query: 158 AIADEEQSKKLI 169
            I D E S  LI
Sbjct: 128 TIHDREDSADLI 139


>gi|239929399|ref|ZP_04686352.1| ATP-dependent DNA helicase II [Streptomyces ghanaensis ATCC 14672]
 gi|291437725|ref|ZP_06577115.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340620|gb|EFE67576.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 835

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++        
Sbjct: 90  IVAGAGSGKTRVLTHRIAYLLAERGVHPGQILAITFTNKAAGEMKERVEQLV-------- 141

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 172 SSFSIYDAADSKRLM 186


>gi|296123691|ref|YP_003631469.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296016031|gb|ADG69270.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 700

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 28/136 (20%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AG+GKT  LV RV  L+     P  +L LT T+ AAAEM  RV +++   +       
Sbjct: 45  AGAGTGKTTTLVHRVAHLIATGIDPGEILLLTFTRRAAAEMIRRVEQLLAVAAK------ 98

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
           S  I +I G           RH++       GG    T HA     +++F     + + F
Sbjct: 99  SPGIARIHG-----------RHVV-------GG----TFHAIATRHLREFGQYLGLDADF 136

Query: 158 AIADEEQSKKLIEEAK 173
            I D   ++ L+ + +
Sbjct: 137 TILDRSDAEDLMNQLR 152


>gi|167855351|ref|ZP_02478118.1| DNA-dependent helicase II [Haemophilus parasuis 29755]
 gi|167853499|gb|EDS24746.1| DNA-dependent helicase II [Haemophilus parasuis 29755]
          Length = 727

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 37/158 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7   LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENIAESNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HR+   +   S  SD                        H L        G+ 
Sbjct: 65  KAATEMRHRIEYTL---SQSSD------------------------HRLF-------GMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+    +++   L+AN+   F I D E  ++LI+
Sbjct: 91  VGTFHSIANRLLRSHYLDANLPQDFQIMDTEDQQRLIK 128


>gi|153839103|ref|ZP_01991770.1| DNA helicase II [Vibrio parahaemolyticus AQ3810]
 gi|149747399|gb|EDM58363.1| DNA helicase II [Vibrio parahaemolyticus AQ3810]
          Length = 723

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 65  KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 124


>gi|119468303|ref|ZP_01611429.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium
           TW-7]
 gi|119448296|gb|EAW29560.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium
           TW-7]
          Length = 721

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 45/193 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ +  A   ++  +T
Sbjct: 4   SELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV           +E L A +                           G
Sbjct: 62  FTNKAAKEMRTRV-----------EETLKAPV---------------------------G 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+ + T H     I++    EAN+   F I D +   ++I    K  L S+ +D+ +   
Sbjct: 84  GMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKWPA 139

Query: 190 KAFYEILEISNDE 202
           K F   +    DE
Sbjct: 140 KQFGWYISAKKDE 152


>gi|254508570|ref|ZP_05120687.1| DNA helicase II [Vibrio parahaemolyticus 16]
 gi|219548512|gb|EED25520.1| DNA helicase II [Vibrio parahaemolyticus 16]
          Length = 723

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 65  KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  I++   L+A +   F I D +  ++L+
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL 123


>gi|148642118|ref|YP_001272631.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061]
 gi|148551135|gb|ABQ86263.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061]
          Length = 1505

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 37/126 (29%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80
           E  +  D  +   + A  GSGKT +L++RV + LL N    P +LL +T TK AA E+  
Sbjct: 462 EAAVMYDGKKPLLIEAGPGSGKTTVLIERV-KYLLNNKGIDPESLLVITFTKKAANELKT 520

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+       S  +D I   ++ K+Q                           + TIH FC
Sbjct: 521 RL-------SEETDNISELDVQKMQ---------------------------ISTIHGFC 546

Query: 141 EAIMQQ 146
             I+++
Sbjct: 547 AKILEK 552


>gi|325291019|ref|YP_004267200.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966420|gb|ADY57199.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 1273

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 46/199 (23%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LV+R++R +    HP     LL +T T AAAAEM  R+ E                
Sbjct: 31  KTAVLVERIIRKITDRQHPVDIDKLLIVTFTNAAAAEMRERIAEA--------------- 75

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           I+K+    P+  ++ +     +T+L       + TIH+FC  +++      N+   F IA
Sbjct: 76  ISKVLEDNPDSPNIQRQ----LTLLHKA---SITTIHSFCLEVIRTNFHRINLDPDFRIA 128

Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT---- 216
           +E ++            A + L++ +EL +  YE  + + DE+ + L+     NR     
Sbjct: 129 NETEA------------ALMKLESLQELFEELYE--KETTDENFDELLECYGGNRDDQAL 174

Query: 217 ---ALKLIFFFFSYLWRRK 232
               L L  F  S  W  K
Sbjct: 175 QDMVLNLYNFIQSSPWPEK 193


>gi|256397096|ref|YP_003118660.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM
           44928]
 gi|256363322|gb|ACU76819.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM
           44928]
          Length = 806

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+   +AHP ++L +T T  AAAEM  RV E++   + L  
Sbjct: 81  IIAGAGSGKTRVLAHRIAYLVGERHAHPGSILAITFTNKAAAEMRQRVEELVGPRARL-- 138

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I++     A + 
Sbjct: 139 ------------------------------------MWVSTFHSACVRILRAQAKTAGLP 162

Query: 155 SHFAIADEEQSKKLI 169
           S+F+I D   S++L+
Sbjct: 163 SNFSIYDTADSQRLM 177


>gi|160902262|ref|YP_001567843.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
 gi|160359906|gb|ABX31520.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
          Length = 706

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 38/145 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A  GSGKT ++  ++  LL     P  +L +T T+AAA EM  RV  +    +   D+
Sbjct: 82  IVAGPGSGKTRVITYKIAYLLNNGVEPENILLVTFTRAAAREMIERVKNVT---NRNIDK 138

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L+                                    T H  C +I++++    +  +
Sbjct: 139 MLAG-----------------------------------TFHHVCNSILRKYATLLDYKN 163

Query: 156 HFAIADEEQSKKLIEEAKKSTLASI 180
           +++I D+E SK L++ AK   +  I
Sbjct: 164 NYSILDKEDSKDLLKMAKSEYIKEI 188


>gi|148258686|ref|YP_001243271.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1]
 gi|146410859|gb|ABQ39365.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1]
          Length = 686

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 29/140 (20%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           P     + A AGSGKT+ L  RV  LL+  A P  +L +T ++ AAAEMS RV  I    
Sbjct: 29  PGPPLLIIAGAGSGKTNTLAHRVAHLLVNGADPRRILLMTFSRRAAAEMSRRVERI---- 84

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              + ++L  +   I                      T G     T H     +++ +  
Sbjct: 85  ---ARKVLGGQAEAI----------------------TAGLTWAGTFHGLGARMLRDYAE 119

Query: 150 EANITSHFAIADEEQSKKLI 169
              I + F I D E S  L+
Sbjct: 120 RIGIDAVFTIHDREDSADLM 139


>gi|13508080|ref|NP_110029.1| DNA helicase II [Mycoplasma pneumoniae M129]
 gi|2495149|sp|P75437|UVRD_MYCPN RecName: Full=Probable DNA helicase II homolog
 gi|1674187|gb|AAB96143.1| DNA helicase II [Mycoplasma pneumoniae M129]
 gi|301633619|gb|ADK87173.1| UvrD/REP helicase [Mycoplasma pneumoniae FH]
          Length = 715

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          V + AG+GKT I+ QR   L      +PS +L LT+T+ AA+EM  R+LE++    H
Sbjct: 26 VYSGAGTGKTTIISQRFAYLFNQKRINPSNILALTYTRKAASEMKQRILELLPEKYH 82


>gi|323345276|ref|ZP_08085499.1| ATP-dependent helicase [Prevotella oralis ATCC 33269]
 gi|323093390|gb|EFZ35968.1| ATP-dependent helicase [Prevotella oralis ATCC 33269]
          Length = 1102

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 9/155 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH---LS 93
           A+AG+GKT  L  R ++LL+ N      +L +T T  A  EM  R+L  +   +H    S
Sbjct: 35  ASAGTGKTFTLATRYIKLLIDNPDSFRNILAVTFTNKATEEMKMRILSQLYGIAHHLPDS 94

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           +E L+ ++ +I G    +   S+A+  L  ++      +V+TI  F ++I++    E ++
Sbjct: 95  EEYLN-KVIEITG-ATEEYIASQAKVALSNLVHNYSYFRVETIDTFFQSILRNLARELDL 152

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           T++  I   E + + IE+    TL   ++  ++EL
Sbjct: 153 TANLRI---ELNDRQIEQQAVDTLIEELVPASKEL 184


>gi|196248138|ref|ZP_03146840.1| recombination helicase AddA [Geobacillus sp. G11MC16]
 gi|196212922|gb|EDY07679.1| recombination helicase AddA [Geobacillus sp. G11MC16]
          Length = 1242

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 25/136 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ + A         LL +T T AAAAEM  R+      
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E L  E+      +P+   + +   LL           + T+H+FC  +++++ 
Sbjct: 81  -----GEALEREL----ANRPHSLHLRRQLSLL-------NRASISTLHSFCLDVIRKYY 124

Query: 149 LEANITSHFAIADEEQ 164
              ++   F IADE +
Sbjct: 125 YLLDLDPSFRIADETE 140


>gi|138894263|ref|YP_001124716.1| ATP-dependent nuclease subunit A [Geobacillus thermodenitrificans
           NG80-2]
 gi|251764525|sp|A4IKW7|ADDA_GEOTN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|134265776|gb|ABO65971.1| ATP-dependent nuclease, subunit A [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1242

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 25/136 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V+A AGSGKT +LV+R+++ + A         LL +T T AAAAEM  R+      
Sbjct: 27  RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E L  E+      +P+   + +   LL           + T+H+FC  +++++ 
Sbjct: 81  -----GEALEREL----ANRPHSLHLRRQLSLL-------NRASISTLHSFCLDVIRKYY 124

Query: 149 LEANITSHFAIADEEQ 164
              ++   F IADE +
Sbjct: 125 YLLDLDPSFRIADETE 140


>gi|213968510|ref|ZP_03396653.1| DNA helicase II [Pseudomonas syringae pv. tomato T1]
 gi|301384752|ref|ZP_07233170.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato Max13]
 gi|302133168|ref|ZP_07259158.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213926798|gb|EEB60350.1| DNA helicase II [Pseudomonas syringae pv. tomato T1]
 gi|330878141|gb|EGH12290.1| DNA-dependent helicase II [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330964448|gb|EGH64708.1| DNA-dependent helicase II [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 727

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|119773559|ref|YP_926299.1| DNA-dependent helicase II [Shewanella amazonensis SB2B]
 gi|119766059|gb|ABL98629.1| ATP-dependent DNA helicase UvrD [Shewanella amazonensis SB2B]
          Length = 721

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +D ++  + E + A  P  S  V A AGSGKT +L  R+  LL + N  P ++L +T T 
Sbjct: 7  LDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILAVTFTN 64

Query: 73 AAAAEMSHRVLEII 86
           AAAEM  RV +I+
Sbjct: 65 KAAAEMRERVEKIV 78


>gi|330952409|gb|EGH52669.1| DNA-dependent helicase II [Pseudomonas syringae Cit 7]
 gi|330970255|gb|EGH70321.1| DNA-dependent helicase II [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 727

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|289677452|ref|ZP_06498342.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae FF5]
          Length = 727

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|28872621|ref|NP_795240.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855877|gb|AAO58935.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 727

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|320009010|gb|ADW03860.1| ATP-dependent DNA helicase PcrA [Streptomyces flavogriseus ATCC
           33331]
          Length = 812

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++        
Sbjct: 87  IVAGAGSGKTRVLTHRIAHLLAERGVHPGQILAITFTNKAAGEMKERVEDLV-------- 138

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++       T
Sbjct: 139 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKRLGFT 168

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 169 SSFSIYDAADSKRLM 183


>gi|94992155|ref|YP_600254.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
 gi|94545663|gb|ABF35710.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
          Length = 863

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++ G   + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLGQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|302670855|ref|YP_003830815.1| UvrD/REP family ATP-dependent DNA helicase [Butyrivibrio
          proteoclasticus B316]
 gi|302395328|gb|ADL34233.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
          proteoclasticus B316]
          Length = 638

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A V A  GSGKT ++V+R+  L+   +  PS++L +T TKAAA EM HR  +I
Sbjct: 25 AMVLAGPGSGKTFVIVERLRHLIEECSVDPSSVLVITFTKAAAIEMQHRFYKI 77


>gi|283852748|ref|ZP_06370012.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283571829|gb|EFC19825.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 733

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 35/138 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  +V R+ RL+     P+++L LT T+ AA EM                 
Sbjct: 24  VIAGAGSGKTRTIVYRLARLVAGGVDPASILLLTFTRKAAQEM----------------- 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                             +S+A  LL    +   G+   T HAF  A ++++   A    
Sbjct: 67  ------------------LSRAGLLLAMGPDGVSGVSGGTFHAFAFATLRRYHAAAGYPD 108

Query: 156 HFAIADEEQSKKLIEEAK 173
            F + D+  S+ ++ +AK
Sbjct: 109 GFTVLDQADSEDVLGQAK 126


>gi|239943694|ref|ZP_04695631.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239990145|ref|ZP_04710809.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291447158|ref|ZP_06586548.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998]
 gi|291350105|gb|EFE77009.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998]
          Length = 812

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++        
Sbjct: 87  IVAGAGSGKTRVLTHRIAHLLAERGTHPGQILAITFTNKAAGEMKERVEQLV-------- 138

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 139 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 168

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 169 SSFSIYDAADSKRLM 183


>gi|331017795|gb|EGH97851.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 727

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|257485680|ref|ZP_05639721.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011968|gb|EGH92024.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 727

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|227548288|ref|ZP_03978337.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079606|gb|EEI17569.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 764

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 48/157 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL   A  P  +L +T T  AAAEM  RV  ++        
Sbjct: 26  IVAGAGSGKTAVLTRRIAYLLQERAVAPWQILAITFTNKAAAEMKERVANLV-------- 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-QQFPLEANI 153
                         P    M                  V T H+ C  I+ QQ  L A +
Sbjct: 78  -------------GPEAQRMW-----------------VATFHSVCVRILRQQAQLVAGL 107

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            ++F+I D + S++L        L+ I  D+N +LKK
Sbjct: 108 NTNFSIYDSDDSRRL--------LSMIAKDHNLDLKK 136


>gi|152968347|ref|YP_001364131.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151362864|gb|ABS05867.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1123

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 16/151 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +V A AG+GKT  LV RV+ ++      H   L  +T T+ AA+E+  R+ E       L
Sbjct: 23  FVEAGAGTGKTTALVARVVHMVATGHLQHVGELAAITFTENAASELRSRIRE------GL 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            D          +G+    +   + R    T         + T+H     I+Q+ PLEA 
Sbjct: 77  ED--------AARGEHRGTTYEPQERDCCRTAAAALDDAAIGTLHGTAIRILQEAPLEAG 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           +   FA+A      +L ++A +  LA ++ D
Sbjct: 129 LPPGFAVASATGGDELDDDAWEDFLADLLAD 159


>gi|330937394|gb|EGH41379.1| DNA-dependent helicase II [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 727

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|330880966|gb|EGH15115.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 727

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|289625507|ref|ZP_06458461.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649762|ref|ZP_06481105.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330870933|gb|EGH05642.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330986942|gb|EGH85045.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 727

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|328884521|emb|CCA57760.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae
           ATCC 10712]
          Length = 816

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   + HP  +L +T T  AA EM  RV +++        
Sbjct: 93  IVAGAGSGKTRVLTHRIAHLLGTRHVHPGQILAITFTNKAAGEMKERVEQLV-------- 144

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 145 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 174

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 175 SSFSIYDAADSKRLM 189


>gi|309775326|ref|ZP_07670334.1| exonuclease RexA [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916908|gb|EFP62640.1| exonuclease RexA [Erysipelotrichaceae bacterium 3_1_53]
          Length = 281

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 22/118 (18%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAW 89
           R+  VSA+AGSGKT +L+ R++ L++ + H S  ++L +T T+AAA EM  R        
Sbjct: 11  RNILVSASAGSGKTTVLIARLMDLVMKD-HVSIDSILAMTFTEAAANEMKKR-------- 61

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             L+ E+ SA +T     +  K+ +++     +T ++T     + TIH+FC +I+Q++
Sbjct: 62  --LATELQSAMLTA--QTEEEKAYITRQ----LTSIQTA---HISTIHSFCLSIIQEY 108


>gi|116328254|ref|YP_797974.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330978|ref|YP_800696.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120998|gb|ABJ79041.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124667|gb|ABJ75938.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 665

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 38/130 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT  +V R+ +L+ +    S++L LT T+ AA EM  R        S + D+
Sbjct: 24  VLAGAGTGKTKTIVSRLAQLVSSGVPTSSILLLTFTRKAAREMLLRA-------SSIGDK 76

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                 T++QG                            T H+FC  ++++F     ++S
Sbjct: 77  ----RCTEVQG---------------------------GTFHSFCSGVLRKFAPVLGLSS 105

Query: 156 HFAIADEEQS 165
            F I DE  +
Sbjct: 106 GFTILDESDT 115


>gi|320321765|gb|EFW77863.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331515|gb|EFW87455.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 727

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|300869706|ref|YP_003784577.1| exodeoxyribonuclease V beta chain [Brachyspira pilosicoli 95/1000]
 gi|300687405|gb|ADK30076.1| exodeoxyribonuclease V beta chain [Brachyspira pilosicoli 95/1000]
          Length = 308

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 31/183 (16%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
            +VSA+AG+GKT  + +  L+LL       S ++ +T TKAAA EM  R+          
Sbjct: 20  CFVSASAGTGKTTTITEAYLKLLENKKQKVSNIVVITFTKAAANEMLIRIRR-------- 71

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                     KI+ K     D    + +   IL      K+ TIH+F  +I++++ +  N
Sbjct: 72  ----------KIREKINEGKDTDYWKDIYKEIL---TNAKISTIHSFANSIVKEYSIYLN 118

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISNDEDIETLISD 210
           +     I +E        E   + +  ++ DN  +EE++K +     I  DE  +  I+D
Sbjct: 119 MPPKITILEENND---FYEVIHNKILELLNDNEFSEEIRKNY----RIFTDESKDKFIND 171

Query: 211 IIS 213
           I +
Sbjct: 172 IFN 174


>gi|298489453|ref|ZP_07007464.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156027|gb|EFH97136.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 727

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|260775103|ref|ZP_05884002.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609020|gb|EEX35180.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 723

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 65  KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  I++   L+A +   F I D +  ++L+
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEDFQIIDTDDQQRLL 123


>gi|237801766|ref|ZP_04590227.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806704|ref|ZP_04593408.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331024625|gb|EGI04681.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027818|gb|EGI07873.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 727

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|71734750|ref|YP_277224.1| DNA-dependent helicase II [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555303|gb|AAZ34514.1| DNA helicase II [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 727

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|118474774|ref|YP_891588.1| putative recombination protein RecB [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414000|gb|ABK82420.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 921

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 23/137 (16%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +R   + A+AGSGKT  L  R + L+L     + +L LT TK AA EM  R   II A+ 
Sbjct: 4   SRYLALEASAGSGKTFALSVRFIALILQGNDIAKILALTFTKKAANEMKSR---IIDAFC 60

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHL----LITILETPGG------LKVQTIHAFC 140
           +L +            KK   +++ K   L    ++++ +   G      LK+ T  +F 
Sbjct: 61  NLHE----------SSKKNELNELEKILELSAVDILSLRDKYMGNFLKNELKISTFDSFF 110

Query: 141 EAIMQQFPLEANITSHF 157
             I++QF L   I   F
Sbjct: 111 TMILRQFSLNLGIMPDF 127


>gi|66048289|ref|YP_238130.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae B728a]
 gi|63258996|gb|AAY40092.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a]
          Length = 727

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|260577850|ref|ZP_05845783.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
 gi|258604009|gb|EEW17253.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
          Length = 950

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT +L +R+  LL     P  +L +T T  AAAEM  RV++++         
Sbjct: 153 IVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTNKAAAEMRERVVDMV--------- 203

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANIT 154
                        P    M                  V T H+FC  +++    L   + 
Sbjct: 204 ------------GPQAERMW-----------------VSTFHSFCVRVLRANAHLAPGLN 234

Query: 155 SHFAIADEEQSKKLI 169
           ++F+I D + SK+L+
Sbjct: 235 TNFSIYDSDDSKRLM 249


>gi|323347961|gb|EGA82220.1| Srs2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1174

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T T 
Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+ E++  
Sbjct: 71 KAANEMKERLQEMLRG 86


>gi|312881427|ref|ZP_07741222.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370909|gb|EFP98366.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 724

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 39/141 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T  AAAEM  R+ E+   
Sbjct: 22  PIENLLVLAGAGSGKTRVLVHRIAWLMSVEEASPFSIMSVTFTNKAAAEMRGRIEEL--- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                              ++ +  G+   T H  C  I++   
Sbjct: 79  -----------------------------------MMGSASGMWNGTFHGLCHRILRAHY 103

Query: 149 LEANITSHFAIADEEQSKKLI 169
           L+A +   F I D +  ++L+
Sbjct: 104 LDAKLPEDFQIIDSDDQQRLL 124


>gi|297562750|ref|YP_003681724.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296847198|gb|ADH69218.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 1150

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78
           +SE + A  P     V A AGSGK+  +  RV+  L+AN H  P  +L LT T+ A AE+
Sbjct: 49  QSEVICA--PLEPGVVIAGAGSGKSETMASRVV-WLVANGHVRPEQILGLTFTRKATAEL 105

Query: 79  SHRV---LEIITAWSHLSDEILSAEIT 102
           + RV   LE + A   L +E+L  E T
Sbjct: 106 AERVRKRLEQLRATEQLPEELLDGEPT 132


>gi|28899787|ref|NP_799392.1| DNA-dependent helicase II [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362520|ref|ZP_05775446.1| DNA helicase II [Vibrio parahaemolyticus K5030]
 gi|260877200|ref|ZP_05889555.1| DNA helicase II [Vibrio parahaemolyticus AN-5034]
 gi|260897243|ref|ZP_05905739.1| DNA helicase II [Vibrio parahaemolyticus Peru-466]
 gi|260901376|ref|ZP_05909771.1| DNA helicase II [Vibrio parahaemolyticus AQ4037]
 gi|28808039|dbj|BAC61276.1| DNA helicase II [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088957|gb|EFO38652.1| DNA helicase II [Vibrio parahaemolyticus Peru-466]
 gi|308094142|gb|EFO43837.1| DNA helicase II [Vibrio parahaemolyticus AN-5034]
 gi|308107188|gb|EFO44728.1| DNA helicase II [Vibrio parahaemolyticus AQ4037]
 gi|308112661|gb|EFO50201.1| DNA helicase II [Vibrio parahaemolyticus K5030]
          Length = 724

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 8   LDDLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 66  KAAAEMRGRIEEL--------------------------------------MMGSASGMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H  C  I++   L+A +   F I D +  ++L++
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125


>gi|6322369|ref|NP_012443.1| Srs2p [Saccharomyces cerevisiae S288c]
 gi|83305803|sp|P12954|SRS2_YEAST RecName: Full=ATP-dependent DNA helicase SRS2
 gi|4277|emb|CAA33706.1| helicase [Saccharomyces cerevisiae]
 gi|521096|emb|CAA54361.1| RADH [Saccharomyces cerevisiae]
 gi|1008264|emb|CAA89385.1| HPR5 [Saccharomyces cerevisiae]
 gi|285812810|tpg|DAA08708.1| TPA: Srs2p [Saccharomyces cerevisiae S288c]
          Length = 1174

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T T 
Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+ E++  
Sbjct: 71 KAANEMKERLQEMLRG 86


>gi|257459106|ref|ZP_05624225.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           gracilis RM3268]
 gi|257443491|gb|EEV18615.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           gracilis RM3268]
          Length = 479

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A+AGSGKT  L  R + L+L     + +L LT TK AAAEM  R++E       + D  L
Sbjct: 12  ASAGSGKTFNLAVRFIELVLKGEPINEILALTFTKKAAAEMKTRIVEKFQNLLIVRDGAL 71

Query: 98  --SAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
             S E+ +I       +D  ++  R LL   L     L V T  AF    ++ F L + I
Sbjct: 72  VPSPELAQICEDLNMSADEVLAAQRRLLPKFLNE--SLNVFTFDAFFAKALRSFALNSGI 129

Query: 154 TSHF 157
              F
Sbjct: 130 DPGF 133


>gi|302684905|ref|XP_003032133.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8]
 gi|300105826|gb|EFI97230.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8]
          Length = 697

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 38/142 (26%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEIIT 87
           DP     + A  GSGKT +L  R+  L+L +  P   +C +T T  AA EM  R      
Sbjct: 18  DPAIPLQILAGPGSGKTKVLTSRIAYLILHHKIPPYAICAVTFTNKAANEMRER------ 71

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                        +TK+ G                   E    +++ T HA C   ++++
Sbjct: 72  -------------LTKLLGP------------------EQTSQIRMGTFHALCAQFLRRY 100

Query: 148 PLEANITSHFAIADEEQSKKLI 169
             +  + S+F I D +++KK+I
Sbjct: 101 GSKIGVDSNFTICDIDEAKKII 122


>gi|225012049|ref|ZP_03702486.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
 gi|225003604|gb|EEG41577.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
          Length = 1059

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 20/156 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++A AGSGKT+ LV R L  LL + +  +   LL LT T  A  EM  R+LE +   S+ 
Sbjct: 21  INAAAGSGKTYTLVLRYLIQLLGSKNSKSYRNLLALTFTNKAVNEMKERILETLLDLSNN 80

Query: 93  S------DEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           S       E L +E  I  I+  +       KA  +L  IL   G   + T+  F   I+
Sbjct: 81  SLKENNIGETLCSELNIEPIELAR-------KADKMLHQILFEYGSFDIITLDKFTHRII 133

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           + F  E  +   F +  + +S  L+EE   S +  +
Sbjct: 134 RSFSRELQLPYGFEVVLDPKS--LLEETVNSIIDKV 167


>gi|190409409|gb|EDV12674.1| DNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|256271681|gb|EEU06720.1| Srs2p [Saccharomyces cerevisiae JAY291]
 gi|290771135|emb|CAY80687.2| Srs2p [Saccharomyces cerevisiae EC1118]
          Length = 1174

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T T 
Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+ E++  
Sbjct: 71 KAANEMKERLQEMLRG 86


>gi|151945237|gb|EDN63486.1| DNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 1174

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T T 
Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+ E++  
Sbjct: 71 KAANEMKERLQEMLRG 86


>gi|330890591|gb|EGH23252.1| DNA-dependent helicase II [Pseudomonas syringae pv. mori str.
           301020]
          Length = 727

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|325298710|ref|YP_004258627.1| ATP-dependent DNA helicase, RecQ family [Bacteroides salanitronis DSM
            18170]
 gi|324318263|gb|ADY36154.1| ATP-dependent DNA helicase, RecQ family [Bacteroides salanitronis DSM
            18170]
          Length = 1644

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66
            Q++++    +S+ + E ++++  +R   V+A  GSGKT +LV ++   LLL +     LL
Sbjct: 1084 QKYNQLFGQLSKRQME-IISNKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1142

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHL 92
             LT ++AAA E   R++E+I   +H 
Sbjct: 1143 MLTFSRAAATEFKQRLMELIGNAAHF 1168


>gi|297192605|ref|ZP_06910003.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151430|gb|EFH31159.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 811

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++        
Sbjct: 86  IVAGAGSGKTRVLTHRIAHLLGTRRVHPGQILAITFTNKAAGEMKERVEQLV-------- 137

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 138 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 167

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 168 SSFSIYDAADSKRLM 182


>gi|326334139|ref|ZP_08200365.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1]
 gi|325948064|gb|EGD40178.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1]
          Length = 819

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+    AHP ++L +T T  AAAEM  RV  ++        
Sbjct: 60  VVAGAGSGKTRVLTRRIAWLISQRGAHPGSILAITFTNKAAAEMKQRVEALV-------- 111

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      GK        +AR + ++           T H+ C  I+++   +  + 
Sbjct: 112 -----------GK--------RARIMWVS-----------TFHSACVRILRKEIDKVGLK 141

Query: 155 SHFAIADEEQSKKLIE 170
           S+F+I D +  K+L++
Sbjct: 142 SNFSIYDAQDQKRLMQ 157


>gi|71903240|ref|YP_280043.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180]
 gi|123640147|sp|Q48UB8|ADDA_STRPM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|71802335|gb|AAX71688.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180]
          Length = 1222

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++ G   + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLGQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|73663117|ref|YP_301898.1| putative ATP-dependent nuclease subunit A [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123642147|sp|Q49WA6|ADDA_STAS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|72495632|dbj|BAE18953.1| putative ATP-dependent nuclease subunit A [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1219

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 35/191 (18%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R++        LL +T T A+A EM  RV            
Sbjct: 31  VAAAAGSGKTAVLVERIIQRIIRDEIDVDKLLVVTFTNASAREMKQRV----------DQ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            I  A I     + P+ + +   R   + I +     ++ T+H+FC  ++QQ     +I 
Sbjct: 81  RIQEASI-----ENPDNAHLKNQR---VKIHQA----QISTLHSFCLKLIQQHYDVLDID 128

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213
            +F  + E ++  L+E+    T+  ++  + + L   F ++ E +S+D + + L      
Sbjct: 129 PNFRTSSEAENILLLEQ----TIDEVLERHYDILDPHFIDLTEQLSSDRNDDQL------ 178

Query: 214 NRTALKLIFFF 224
            R  +K +++F
Sbjct: 179 -RNTIKEMYYF 188


>gi|330961415|gb|EGH61675.1| DNA-dependent helicase II [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 727

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++        
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +P G+ V T H     +++    EA + 
Sbjct: 83  --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D +  ++L++   +
Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130


>gi|281355725|ref|ZP_06242219.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548]
 gi|281318605|gb|EFB02625.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548]
          Length = 1235

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AG+GKT+ +   V+R +L    P   LL +T+T+AAAAE++ R+ ++++      +
Sbjct: 20  IEAAAGTGKTYNIQNLVVRAVLERDIPIEKLLVVTYTRAAAAELAGRIRQVLSGTLAALE 79

Query: 95  EILSAEI---TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           + L  E     ++  +        + R  L T L       V TIH FC+ ++++   E+
Sbjct: 80  KRLPPESGREAQLVARALETLTSEECRKRLRTALFDFDAATVTTIHGFCQKVLRENAFES 139

Query: 152 NI 153
            I
Sbjct: 140 GI 141


>gi|293115645|ref|ZP_06604556.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876]
 gi|292809250|gb|EFF68455.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876]
          Length = 1187

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 25/159 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R++  +    +P     ++ +T TK+AA EM  R+ +        
Sbjct: 34  VSAAAGSGKTAVLVERIVSRVFDERNPVDIDRIVIVTFTKSAAGEMKERLTKRF------ 87

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            ++IL A+     G +     ++   H            K+ TI +FC  I++ +     
Sbjct: 88  -EDILKADC----GNRRAIRQIALINH-----------AKITTIDSFCSYILKNYYNTIG 131

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
               + IAD+ +++ + E+     L   + +N+E L  A
Sbjct: 132 YEPSYRIADKGETELIKEDVYNELLEERLKNNDENLITA 170


>gi|302869847|ref|YP_003838484.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC
           27029]
 gi|302572706|gb|ADL48908.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC
           27029]
          Length = 803

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A + HP  ++ +T T  AA EM  RV  ++   + L  
Sbjct: 61  IVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVAALVGPRARL-- 118

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I++     A + 
Sbjct: 119 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 142

Query: 155 SHFAIADEEQSKKLIE 170
           S F+I D + S++L++
Sbjct: 143 STFSIYDADDSRRLMQ 158


>gi|302558895|ref|ZP_07311237.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000]
 gi|302476513|gb|EFL39606.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000]
          Length = 825

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   + HP  +L +T T  AA EM  RV +++        
Sbjct: 90  IVAGAGSGKTRVLTHRIAHLLAERHVHPGQILAITFTNKAAGEMKERVEQLV-------- 141

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++       T
Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKRLGFT 171

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 172 SSFSIYDAADSKRLM 186


>gi|331699083|ref|YP_004335322.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953772|gb|AEA27469.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans
           CB1190]
          Length = 800

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   + HP  ++ +T T  AAAEM  RV  ++        
Sbjct: 44  IVAGAGSGKTRVLTHRIAWLLAERHVHPGEIMSITFTNKAAAEMKERVDALV-------- 95

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G++ N                    + V T H+ C  I+++      + 
Sbjct: 96  -----------GRRAN-------------------AMWVSTFHSMCVRILRREAKHLGVR 125

Query: 155 SHFAIADEEQSKKLI 169
           S F++ D + S++L+
Sbjct: 126 SAFSVYDADDSRRLV 140


>gi|318058788|ref|ZP_07977511.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actG]
 gi|318075472|ref|ZP_07982804.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actF]
          Length = 829

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++   +    
Sbjct: 91  IVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNKAAGEMKERVEQLVGPRA---- 146

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                             G + V T H+ C  I+++   +   T
Sbjct: 147 ----------------------------------GAMWVSTFHSACVRILRRESKKLGFT 172

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 173 SSFSIYDAADSKRLM 187


>gi|251764599|sp|Q1JCJ8|ADDA_STRPB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
          Length = 1222

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++ G   + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLGQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|94988280|ref|YP_596381.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429]
 gi|251764560|sp|Q1JMH5|ADDA_STRPC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|94541788|gb|ABF31837.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429]
          Length = 1222

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++ G   + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLGQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|15639883|ref|NP_219333.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026121|ref|YP_001933893.1| ATP-dependent nuclease, subunit A [Treponema pallidum subsp.
           pallidum SS14]
 gi|3323214|gb|AAC65853.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018696|gb|ACD71314.1| possible ATP-dependent nuclease, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291060257|gb|ADD72992.1| ATP-dependent DNA helicase UvrD [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 1239

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSH 80
           +EQ  A   + +A V+A AGSGKT ++  R + L++  A P   ++ LT T+ AA EM+ 
Sbjct: 14  AEQRRAVFSSHNAVVTAGAGSGKTKVISARYIHLVVERAIPVERIVVLTFTRKAAMEMAR 73

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ E         D  L  +    Q +  +++ + +AR  L       G  ++ T+ AF 
Sbjct: 74  RIYE---------DLRLCVQSASAQPEPGHEAYLLRAREALARF----GEARIMTLDAFS 120

Query: 141 EAIMQQFPLEANITSHFAIADEE 163
             I +       I   F++++EE
Sbjct: 121 HEIARVGARFFGIAPDFSLSEEE 143


>gi|302519556|ref|ZP_07271898.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
 gi|302428451|gb|EFL00267.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
          Length = 829

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++   +    
Sbjct: 91  IVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNKAAGEMKERVEQLVGPRA---- 146

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                             G + V T H+ C  I+++   +   T
Sbjct: 147 ----------------------------------GAMWVSTFHSACVRILRRESKKLGFT 172

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 173 SSFSIYDAADSKRLM 187


>gi|254383079|ref|ZP_04998433.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1]
 gi|194341978|gb|EDX22944.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1]
          Length = 847

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A   HP  +L +T T  AA EM  RV  ++        
Sbjct: 86  IVAGAGSGKTRVLTHRIGHLLAARGVHPGQILAITFTNKAAGEMRERVEGLV-------- 137

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++       T
Sbjct: 138 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKRLGFT 167

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 168 SSFSIYDAADSKRLM 182


>gi|262340924|ref|YP_003283779.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
          germanica) str. Bge]
 gi|262272261|gb|ACY40169.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
          germanica) str. Bge]
          Length = 709

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  R++ ++     +PS +L LT TK AA EM HR+  +I
Sbjct: 20 VLAGAGSGKTRVITYRIVHMIQNIGINPSNILALTFTKKAAKEMKHRISNMI 71


>gi|207344042|gb|EDZ71311.1| YJL092Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 987

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T T 
Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+ E++  
Sbjct: 71 KAANEMKERLQEMLRG 86


>gi|323354422|gb|EGA86261.1| Srs2p [Saccharomyces cerevisiae VL3]
          Length = 1143

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T T 
Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+ E++  
Sbjct: 71 KAANEMKERLQEMLRG 86


>gi|332107681|gb|EGJ08905.1| UvrD/REP helicase [Rubrivivax benzoatilyticus JA2]
          Length = 675

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V ++ RLL A   P  +  +T T  AAAEM  R  +I+  
Sbjct: 25 VLAGAGSGKTRVIVHKIARLLQAGLEPRQIAAITFTNKAAAEMRERAKQIVGG 77


>gi|91977214|ref|YP_569873.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91683670|gb|ABE39972.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
          Length = 688

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          E  + + P     V A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEM+ RV
Sbjct: 20 EHGVGAGPCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMTFSRRAAAEMTRRV 79

Query: 83 LEI 85
            I
Sbjct: 80 ERI 82


>gi|329121403|ref|ZP_08250028.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister
          micraerophilus DSM 19965]
 gi|327469693|gb|EGF15160.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister
          micraerophilus DSM 19965]
          Length = 1285

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82
          +SA AGSGKT +LV+R++R +     P   + LL LT TKAAA+EM  RV
Sbjct: 23 LSAAAGSGKTAVLVERIIRRITDLDDPTDVTDLLVLTFTKAAASEMKSRV 72


>gi|225157628|ref|ZP_03725018.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
 gi|224802695|gb|EEG20948.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
          Length = 678

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          ID   +   EQL A + P     V A AGSGKT  L  RV  LL     P  +L LT T 
Sbjct: 21 IDFAYELNEEQLAAVTAPPGPLLVLAGAGSGKTRTLTYRVAWLLAQGIKPWQILLLTFTN 80

Query: 73 AAAAEMSHRVLEI 85
           AA EM HRV ++
Sbjct: 81 KAAKEMLHRVQDL 93


>gi|320168377|gb|EFW45276.1| ATP-dependent DNA helicase Rep [Capsaspora owczarzaki ATCC 30864]
          Length = 1072

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 37/157 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +DL S  + ++   + P     V A  GSGKT ++V RV  L+     P T+L +T T  
Sbjct: 17  VDLSSMNEQQRAAVTAPGGVVCVVAGPGSGKTRVIVHRVAHLIQTGTDPRTILLVTFTNK 76

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+  ++     L+  +++                                   
Sbjct: 77  AAAEMKSRLQLLVQ--EPLAKLVMAG---------------------------------- 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            T H+ C   +++   +  ++S+F+I D E  K L++
Sbjct: 101 -TFHSVCARFLRRHARDVGLSSNFSIIDTEDVKALLK 136


>gi|254446951|ref|ZP_05060418.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium
           HTCC5015]
 gi|198263090|gb|EDY87368.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium
           HTCC5015]
          Length = 1215

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLL--------ANAH-----PSTLLCLTHTKAAAAEMSHRV 82
           + A+AG+GKT  L    LRL+L        A+ H     P  +L +T T+AA  E+  R+
Sbjct: 11  IEASAGTGKTFTLAGLYLRLVLGHGDSLQSADGHAQALRPQDILVMTFTEAATQELRERI 70

Query: 83  LEIIT----AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            E +     A+S    + L   +T +    P++   S+  HLL    +      + TIH 
Sbjct: 71  RERLAEAAEAFSGRLKDKLDPLLTTLLNDYPDEQ-HSRCAHLLNAAAQDMDEAAITTIHG 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           FC+ ++++   ++   S F ++ +E  K L +++
Sbjct: 130 FCQRMLREHAFDSR--SLFNLSLQEDEKTLTDDS 161


>gi|116619175|ref|YP_821331.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
 gi|116222337|gb|ABJ81046.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1088

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 19/131 (14%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            +D  RS  V A+AG+GKT  LV R++ ++ A     T++ +T T AAA  M  RV    
Sbjct: 7   GADLERSWVVEASAGTGKTTALVDRMVEVIAAGTPVETIVAVTFTHAAAGNMKLRV---- 62

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
               H  +   +AE  +    +   +  S  R              + TIHAFC  ++++
Sbjct: 63  ---RHELERRRAAETDEAIRLRLADAARSLDRAF------------IGTIHAFCAQLLRR 107

Query: 147 FPLEANITSHF 157
            P+EA +   F
Sbjct: 108 RPVEAQVDPVF 118


>gi|315501309|ref|YP_004080196.1| ATP-dependent DNA helicase pcra [Micromonospora sp. L5]
 gi|315407928|gb|ADU06045.1| ATP-dependent DNA helicase PcrA [Micromonospora sp. L5]
          Length = 803

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL A + HP  ++ +T T  AA EM  RV  ++   + L  
Sbjct: 61  IVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVAALVGPRARL-- 118

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I++     A + 
Sbjct: 119 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 142

Query: 155 SHFAIADEEQSKKLIE 170
           S F+I D + S++L++
Sbjct: 143 STFSIYDADDSRRLMQ 158


>gi|228473051|ref|ZP_04057808.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275633|gb|EEK14410.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624]
          Length = 1071

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 23/193 (11%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEIITAWS--- 90
           +A+AGSGKT  LV+  L+L+LA  +     TLL +T T  A  EM  RV+  +  +S   
Sbjct: 8   NASAGSGKTFTLVKSFLKLILATKNVEAYKTLLAITFTNKAVNEMKERVINQLLLFSTPD 67

Query: 91  --------HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
                     SD+I+  ++ + +    ++    +++ +L  IL    G  + TI  F + 
Sbjct: 68  TLVEEGEKKASDDIMFVQLAQ-ELLLSHEELQERSQKVLKHILHNYAGFTITTIDGFNQR 126

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI----LEI 198
           +++ F  +  +  +F +  E  +  L+  A ++       + N+ L K   E     +E 
Sbjct: 127 LIRSFAFDLKLNPNFEVFLE--TDDLLRLAIENLFKKA--NENQLLTKLLLEFSRDKIEE 182

Query: 199 SNDEDIETLISDI 211
             D DIET + DI
Sbjct: 183 DKDWDIETELFDI 195


>gi|323144233|ref|ZP_08078864.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas
           hippei YIT 12066]
 gi|322415985|gb|EFY06688.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas
           hippei YIT 12066]
          Length = 1304

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 27/154 (17%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPST-----------LLCLTHTKAAAAEMSHR 81
           S+ + A+AG+GKT  +   VLRLLL + +  T           +L +T T+AAA+++  R
Sbjct: 18  SSLIEASAGTGKTFTITYLVLRLLLGSGNAKTRLKQGPLDLDQILIVTFTRAAASDLRKR 77

Query: 82  VLEII----TAWSHLS--------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           + E I     A+   +        DE L+  + ++QGK  +  D S+  +     ++T  
Sbjct: 78  IRENIRQAKEAFDEFAKDPEYRAKDEPLNDLLVEMQGKGISPKDCSQILNKAERGIDTAA 137

Query: 130 GLKVQTIHAFC-EAIMQQFPLEANITSHFAIADE 162
              + TIH+FC  A+ Q +  EA      A+ D+
Sbjct: 138 ---ICTIHSFCNRALNQIYAFEAGEAFETALTDD 168


>gi|163754620|ref|ZP_02161742.1| putative helicase [Kordia algicida OT-1]
 gi|161325561|gb|EDP96888.1| putative helicase [Kordia algicida OT-1]
          Length = 1084

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 11/131 (8%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT+ LV+  LR+LL +    T   +L +T T  A AEM  R+++ +  ++   
Sbjct: 46  NASAGSGKTYTLVKDYLRILLKSVQKDTYKQILAVTFTNKAVAEMKARIIQNLNLFAF-- 103

Query: 94  DEI-----LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           DE      +  E+ +     P +    K++ +L +IL      +V TI  F  ++++ F 
Sbjct: 104 DEASKNSPMFVELAEDLKLHPAQL-QQKSKDVLKSILHNYAFFEVSTIDKFTHSVIRTFA 162

Query: 149 LEANITSHFAI 159
            +  +  +F +
Sbjct: 163 YDLKLPLNFEV 173


>gi|259502070|ref|ZP_05744972.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041]
 gi|259169983|gb|EEW54478.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041]
          Length = 1386

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 22/153 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T ++Q   SD  R+  VSA+AGSGKT +LV R + L+    A    +L +T T AAA  M
Sbjct: 7   TPAQQQAISDRDRNIIVSASAGSGKTAVLVNRAVALIKEGRATVDRMLLVTFTDAAAKNM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++ + +        E+  AE        P   D+   +   + + +      + TIHA
Sbjct: 67  RDKIRQRL-------QEVAQAE--------PRLRDLMNEQVNRLAVAD------ISTIHA 105

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           FC  +++++     +   F +  ++  + L++E
Sbjct: 106 FCLKLIKRYYFLIGLDPQFRLLTDDTERLLLQE 138


>gi|323141943|ref|ZP_08076800.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413578|gb|EFY04440.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium
           sp. YIT 12067]
          Length = 1140

 Score = 48.1 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 82/167 (49%), Gaps = 26/167 (15%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMS 79
           EQ LA +  +S   + A AGSGKT++L++R +++L ++   +P+ ++ +T T+ AA E+ 
Sbjct: 18  EQALAINTIKSNVSLLAGAGSGKTYVLMKRFVQILRSDLSVNPTNIVAITFTRKAADEIK 77

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR--HLLITILETPGGLKVQTIH 137
            RV + +                  +  +  ++D+ + R    L  +   P    + TIH
Sbjct: 78  GRVRQAVG-----------------ECVEQAQTDLERLRWQEHLQKVESAP----ISTIH 116

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           + C  I++  P+E  +   F I ++ +++   +E  +  L   + +N
Sbjct: 117 SLCSRILRDNPVETQLDPEFTILEDFEAQDFFKETLQQFLRKNIKEN 163


>gi|116618575|ref|YP_818946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271225|sp|Q03W49|ADDA_LEUMM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116097422|gb|ABJ62573.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1230

 Score = 48.1 bits (113), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 20/166 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK++Q    +   +  V+A+AGSGKT +L++R+++ +L+       L +T T AAA EM 
Sbjct: 6   TKNQQRAIEEKGHNILVAASAGSGKTTVLIERLIQKILSGVSVEKFLIVTFTNAAAKEMR 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R LE+                     K+   +D S+ R L   +L  P    + TI A+
Sbjct: 66  ER-LEVAIE------------------KRLKVADESQKRFLQEQLLILPAA-NISTIDAY 105

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
              I++ +     +   F +  +   +KL+++   + + +   D N
Sbjct: 106 ALRIIEMYYHIIGLDPQFRLLSDTAERKLLQQDVLTDVLADFYDEN 151


>gi|313891437|ref|ZP_07825053.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII
          345-E]
 gi|313120212|gb|EFR43388.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII
          345-E]
          Length = 1283

 Score = 48.1 bits (113), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82
          +SA AGSGKT +LV+R++R +     P   + LL LT TKAAA+EM  RV
Sbjct: 23 LSAAAGSGKTAVLVERIIRRITDLDDPTDVTDLLVLTFTKAAASEMKSRV 72


>gi|309778890|ref|ZP_07673660.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp.
           5_7_47FAA]
 gi|308922237|gb|EFP67864.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp.
           5_7_47FAA]
          Length = 716

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 20/134 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKTH L  RV  L+   A P  +L LT ++ AA+E+S+R   ++         
Sbjct: 48  VLAGAGSGKTHTLGWRVAHLVANGADPQRILLLTFSRRAASELSNRAGHLLA-------- 99

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                   +QG++ N + ++ A     T L   G     T H     +++++     +  
Sbjct: 100 ------RAMQGERSNNA-LNSAGTSYKTTLPWAG-----TFHGIGARLLREYAERVGLAP 147

Query: 156 HFAIADEEQSKKLI 169
            F I D   S  L+
Sbjct: 148 DFTIHDRSDSADLL 161


>gi|297616711|ref|YP_003701870.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144548|gb|ADI01305.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM
           12680]
          Length = 1250

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 25/130 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AG+GKT +LV R++  L    +P   + LL +T+T AAAAEM  R+          
Sbjct: 23  VSAAAGTGKTAVLVGRIMGHLKDPVNPIDINRLLVVTYTNAAAAEMRERI---------- 72

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               L++EI++      N   M   R +++          + T+H+FC  ++++      
Sbjct: 73  -RAELASEISR------NPESMHLRRQMILL-----NDACIATMHSFCLDVVREHFYMVG 120

Query: 153 ITSHFAIADE 162
           +   F +ADE
Sbjct: 121 LDPAFRLADE 130


>gi|187926312|ref|YP_001892657.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|241665800|ref|YP_002984159.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|187728066|gb|ACD29230.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|240867827|gb|ACS65487.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 716

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 20/134 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKTH L  RV  L+   A P  +L LT ++ AA+E+S+R   ++         
Sbjct: 48  VLAGAGSGKTHTLGWRVAHLVANGADPQRILLLTFSRRAASELSNRAGHLLA-------- 99

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                   +QG++ N + ++ A     T L   G     T H     +++++     +  
Sbjct: 100 ------RAMQGERSNNA-LNSAGTSYKTTLPWAG-----TFHGIGARLLREYAERVGLAP 147

Query: 156 HFAIADEEQSKKLI 169
            F I D   S  L+
Sbjct: 148 DFTIHDRSDSADLL 161


>gi|299140513|ref|ZP_07033651.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735]
 gi|298577479|gb|EFI49347.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735]
          Length = 1075

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L  + ++LL+ N H     L +T T  A  EM  R+L  +   S  L + 
Sbjct: 9   ASAGSGKTFTLAVQYIKLLVENPHAYRHTLAVTFTNKATEEMKMRILSQLYGISRGLKES 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E  K Q      + ++ A + L  ++      +V+TI AF + +++    E  +T+
Sbjct: 69  KPYLESVKQQTSLDETTIINNASYALSELIHNYSYFRVETIDAFFQTVLRNLARELELTA 128

Query: 156 HFAI------ADEEQSKKLIEEAKKSTL 177
           +  I       +++   +LIE+   S+L
Sbjct: 129 NLRIELNDQQVEQQAVDQLIEDLNDSSL 156


>gi|282890111|ref|ZP_06298642.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281499962|gb|EFB42250.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 721

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT ++ QR+  L+     PS +L +T T  AA+EM +RV E+
Sbjct: 21 VLAGAGSGKTRVVTQRIAHLIDEGIPPSQILAVTFTNKAASEMQNRVKEL 70


>gi|260773436|ref|ZP_05882352.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14]
 gi|260612575|gb|EEX37778.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14]
          Length = 1204

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 16/144 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-----HPSTL-----LCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +      HP+ L     L +T T+AA AE+  R+ + 
Sbjct: 25  IEASAGTGKTFTIAALYLRLLLGHGNADTRHPTPLTVDQILVVTFTEAATAELRDRIRQR 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I   + ++    S++   IQG   + +D      +L+          V TIH FC+ ++ 
Sbjct: 85  IHQ-ARIAFLRGSSDDPVIQGLLADYADRPGVAKVLLQAERQMDEAAVYTIHGFCQRMLT 143

Query: 146 QFPLEANITSHFA---IADEEQSK 166
           Q   E+   S F+   + DE Q K
Sbjct: 144 QNAFESG--SRFSNEFVTDESQLK 165


>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
 gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
          Length = 892

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 58/148 (39%), Gaps = 40/148 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A  G GKTHIL +RV            +LCLT T  AA EM+ R+  I          
Sbjct: 22  VLAPPGCGKTHILAERVRYAFSKGIAFEDMLCLTFTNRAAREMTSRIKNIF--------- 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                        PNK D+S               L+V  +H FC   + ++     + S
Sbjct: 73  -------------PNK-DIS--------------TLQVGNVHHFCSKFLFEY---KKVPS 101

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLD 183
             +I DEE++  +I E K      I+ D
Sbjct: 102 DSSIIDEEEAVSIIAEYKNEDDQGIIGD 129


>gi|302342252|ref|YP_003806781.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301638865|gb|ADK84187.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 741

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 43/152 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +Q ++ +LL     R   V A AGSGKT  LV RV  ++     P  +L LT T+ AAAE
Sbjct: 15  AQRQAVELLG----RPVLVIAGAGSGKTRTLVHRVAHVVELGVDPREILLLTFTRRAAAE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M                                   +++AR L        GG    T H
Sbjct: 71  M-----------------------------------LARARQLNPACAAVGGG----TFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           + C  +++++   A +  +F I D   ++ L+
Sbjct: 92  SLCNRLLRRYAARAGLMPNFTIIDPADAEHLV 123


>gi|319442768|ref|ZP_07991924.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
           DSM 44702]
          Length = 931

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 21/127 (16%)

Query: 21  KSEQLLAS-DPTRSAWVS---------ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           + E+LLA  +P + A V          A AGSGKT +L +RV  LL     P  +L +T 
Sbjct: 108 REEELLAGLNPAQRAAVVHHGSPLLIVAGAGSGKTSVLTRRVAWLLAHGVAPWQILAITF 167

Query: 71  TKAAAAEMSHRVLEII---------TAWSHLSDEILSAEITKIQGKKPNKS--DMSKARH 119
           T  AAAEM  RV +++         + +  L   IL A    I+G   N +  D    + 
Sbjct: 168 TNKAAAEMRERVTDLVGPVAERMWLSTFHSLCVRILRANAQLIEGLNTNFTIYDSDDQKR 227

Query: 120 LLITILE 126
           L+  +L+
Sbjct: 228 LITMVLK 234


>gi|170782260|ref|YP_001710593.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
          subsp. sepedonicus]
 gi|169156829|emb|CAQ01996.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
          subsp. sepedonicus]
          Length = 1086

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST- 64
          S Q  +ET+ L S T+ ++ +   P     V A AGSGKT  +  RV+  LLAN H    
Sbjct: 16 SAQRIAETLGLPSPTEQQRRVIESPLEPGLVVAGAGSGKTETMASRVV-WLLANGHVGVE 74

Query: 65 -LLCLTHTKAAAAEMSHRV 82
           +L LT T+ AA E+  R+
Sbjct: 75 EILGLTFTRKAAGELGVRI 93


>gi|146284345|ref|YP_001174498.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501]
 gi|145572550|gb|ABP81656.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501]
          Length = 1182

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 9/159 (5%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL 83
           LL S     + + A+AG+GKT  L     RLLL        +L +T+T AA AE+  R+ 
Sbjct: 5   LLDSPFDGRSLIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELRERIR 64

Query: 84  EIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
             +     + D   S++  + ++  + P+  D S+ R LL   +       + TIH FC+
Sbjct: 65  ARLADLLAVYDGTPSSDDFLNRLHARYPD--DASRRRLLL--AVHGFDEAAIFTIHGFCQ 120

Query: 142 AIMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKSTLA 178
             +Q    EA  +  S     D E    L+ +A +S LA
Sbjct: 121 RALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELA 159


>gi|332034801|gb|EGI71338.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 721

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 45/193 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ +  A   ++  +T
Sbjct: 4   SQLLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV           +E L A +                           G
Sbjct: 62  FTNKAAKEMRSRV-----------EETLKAPV---------------------------G 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+ + T H     I++    EAN+   F I D +   ++I    K  L S+ +D+ +   
Sbjct: 84  GMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKWPA 139

Query: 190 KAFYEILEISNDE 202
           K F   +    DE
Sbjct: 140 KQFGWYISAKKDE 152


>gi|328947535|ref|YP_004364872.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328447859|gb|AEB13575.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 1265

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 18/124 (14%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHR 81
           Q+ A     +A VSA AGSGKT +L  R   LL+   N H   +L LT TK AA+E+  R
Sbjct: 26  QIKAITKKDNAVVSAGAGSGKTDVLALRYAFLLMTDENIHIKNILALTFTKEAASEIYDR 85

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + + ++    D            K P +  ++K        L+     K+QT+ A+  
Sbjct: 86  IYKKLNSFVKFLD----------NDKYPKQVKLAK------RALDEFADAKIQTLDAYSG 129

Query: 142 AIMQ 145
           ++++
Sbjct: 130 SLVR 133


>gi|300727037|ref|ZP_07060456.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14]
 gi|299775581|gb|EFI72172.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14]
          Length = 784

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 14/128 (10%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E  +L+SQ    Q  A +    A  V A AGSGKT +L  ++  LL+    P  +L LT 
Sbjct: 2   EEKELLSQLNDSQRAAVEYLDGASLVIAGAGSGKTRVLTYKIAYLLMKGYEPWDILALTF 61

Query: 71  TKAAAAEMSHRVLEIITA----------WSHLSDEILSAEITKIQGKKPNKS--DMSKAR 118
           T  AA EM  R+  ++ A          +  +   IL  E   I G  PN +  D + +R
Sbjct: 62  TNKAAKEMQSRIGSLVGADRARYLNMGTFHSIFARILRREAAHI-GYNPNFTIYDEADSR 120

Query: 119 HLLITILE 126
            L+ TI++
Sbjct: 121 SLIKTIIK 128


>gi|169350949|ref|ZP_02867887.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552]
 gi|169292011|gb|EDS74144.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552]
          Length = 714

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  R+  L+      P  +L +T T  AA EM  RV++++          
Sbjct: 26  AGAGSGKTRVITYRIAYLIDEIGVDPRKILAITFTNKAANEMKERVVDLLGV-------- 77

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                 H L        G  + TIH+ C  I++Q     N  S+
Sbjct: 78  ----------------------HAL--------GSLICTIHSLCVRILRQHINVINYPSN 107

Query: 157 FAIADEEQSKKLIEE 171
           F I DEE  K LI++
Sbjct: 108 FTIMDEEDQKALIKK 122


>gi|149921796|ref|ZP_01910242.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149817357|gb|EDM76831.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 683

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-- 87
           P     V A AG+GKT  L  RV +L+     P  ++ +T T  AA EM HRV  ++T  
Sbjct: 32  PAGKILVLAGAGTGKTRTLTYRVAKLVAGGCQPERIMLVTFTNRAAREMVHRVESLLTID 91

Query: 88  -------AWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHA 138
                   + H+ + IL     +  G  P+    D   AR L+ +++ +  G+ V T   
Sbjct: 92  MRRSASGTFHHVGNRILR-RYGEAVGLGPDFGILDPEDARDLMGSVV-SELGMAVLTSKR 149

Query: 139 FCEA 142
           F +A
Sbjct: 150 FPDA 153


>gi|311112208|ref|YP_003983430.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931]
 gi|310943702|gb|ADP39996.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931]
          Length = 957

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           ID ++  + E +L S       + A AGSGKT +L  R+  LL    A P  +L +T T 
Sbjct: 115 IDGLNDRQREAVLHSG--SPLLIVAGAGSGKTRVLTHRIAHLLATGRATPGQILAITFTN 172

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I                             +A+H+ I+         
Sbjct: 173 KAAAEMRERIQALIG---------------------------PRAQHMWIS--------- 196

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H+FC  ++++      + S F I D   S++L+
Sbjct: 197 --TFHSFCVRVLRREAKALGLKSTFTIYDSADSQRLL 231


>gi|288947725|ref|YP_003445108.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
            180]
 gi|288898241|gb|ADC64076.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
            180]
          Length = 1715

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 23   EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
            + ++A+ P  S  V A  GSGKT ++V RV  LL    AHP  ++ L + ++A +E+ HR
Sbjct: 1089 QAIVAAPPEGSLLVLAGPGSGKTRVIVHRVAWLLRQGMAHPQDIMVLAYNRSAVSEIRHR 1148

Query: 82   VLEIITAWSHLSDEILSAEITKIQG 106
            +      W+ +  E +   +  + G
Sbjct: 1149 L------WALVGPEAVGVSVQTVHG 1167


>gi|196231880|ref|ZP_03130736.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196224002|gb|EDY18516.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 666

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 62/158 (39%), Gaps = 39/158 (24%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  ++   +Q  A + P   A V A AGSGKT  L  RV  LL     P  +L LT T 
Sbjct: 18  IDFAAELNPQQHEAVTAPPGPALVIAGAGSGKTRTLTFRVAYLLENGVLPQNILLLTFTN 77

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                      PN  D+S              GL 
Sbjct: 78  KAAREMLDRVANLL----------------------PN--DIS--------------GLW 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
             T H+    ++++ P  A     F+I D E  + +++
Sbjct: 100 GGTFHSVGNRLLRRHPEAAGFAPGFSIMDREDQQDMLD 137


>gi|330444888|ref|ZP_08308543.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489198|dbj|GAA03040.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 723

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                  +QG                    +  G+ 
Sbjct: 65  KAAAEMRGRINEL------------------MQG--------------------SSAGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  +++   L+A +   F I D +   +L+
Sbjct: 87  NGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL 123


>gi|145641213|ref|ZP_01796793.1| DNA helicase II [Haemophilus influenzae R3021]
 gi|145274050|gb|EDK13916.1| DNA helicase II [Haemophilus influenzae 22.4-21]
          Length = 726

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 39/162 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +E +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4   AELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETP 128
            T  AAAEM HR+                            +S ++K A+H L       
Sbjct: 62  FTNKAAAEMRHRI----------------------------QSTLAKHAQHQLF------ 87

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            G+ + T H+    +++   L+  +   F I D E  ++LI+
Sbjct: 88  -GMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLIK 128


>gi|86143639|ref|ZP_01062015.1| putative helicase [Leeuwenhoekiella blandensis MED217]
 gi|85829682|gb|EAQ48144.1| putative helicase [Leeuwenhoekiella blandensis MED217]
          Length = 1047

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AG+GKT  LV+  L +L  +++      +L +T T  A AEM  R+++ +  +S  S
Sbjct: 11  NASAGAGKTFALVKNYLSILFKSSNDFKYRRILAITFTNKAVAEMKTRIIKNLQDFS--S 68

Query: 94  DEILSAEITKIQGKKP----NKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           D I + +   +   +      +S++ +KA+ +L  I++      V TI  F   I++ F 
Sbjct: 69  DAIFTQDNPMLSAVEEETGLERSEIQNKAKRILKHIVQDYASFDVVTIDNFTHRIIRTFA 128

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE--DIET 206
            +  I  +F +  E  ++ ++E+A  S +     D N       Y + +I ND+  DI  
Sbjct: 129 YDLKIPQNFEV--ELNTQDVLEQAVDSLIDKAGKDQNITRVLLDYALEKIDNDKSWDISR 186

Query: 207 LISDI 211
              DI
Sbjct: 187 DFYDI 191


>gi|255020260|ref|ZP_05292329.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus
          ATCC 51756]
 gi|254970402|gb|EET27895.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus
          ATCC 51756]
          Length = 729

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          SE I L  Q +   LL   P   A V A AGSGKT +L+ R+  LL     P+ +L +T 
Sbjct: 16 SEWIQLNDQQREAVLLPPGP---ALVLAGAGSGKTRVLISRIAHLLEEGVRPAEILAVTF 72

Query: 71 TKAAAAEMSHRVLEII 86
          T  AA  M  R+  ++
Sbjct: 73 TNKAARSMRERLAALV 88


>gi|283457344|ref|YP_003361920.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133335|dbj|BAI64100.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 985

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL  + A P  +L +T T  AAAEM  R+  ++        
Sbjct: 160 IVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAAAEMRERIEALVG------- 212

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                +A+H+ I+           T H+FC  ++++      + 
Sbjct: 213 --------------------PRAKHMWIS-----------TFHSFCVRVLRREAAALGLK 241

Query: 155 SHFAIADEEQSKKLI 169
           S F I D   S++L+
Sbjct: 242 STFTIYDSTDSQRLL 256


>gi|260582117|ref|ZP_05849911.1| DNA helicase II [Haemophilus influenzae NT127]
 gi|260094749|gb|EEW78643.1| DNA helicase II [Haemophilus influenzae NT127]
          Length = 727

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 39/162 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +E +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5   AELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETP 128
            T  AAAEM HR+                            +S ++K A+H L       
Sbjct: 63  FTNKAAAEMRHRI----------------------------QSTLAKHAQHQLF------ 88

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            G+ + T H+    +++   L+  +   F I D E  ++LI+
Sbjct: 89  -GMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLIK 129


>gi|327482729|gb|AEA86039.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri DSM
           4166]
          Length = 1182

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 9/159 (5%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL 83
           LL S     + + A+AG+GKT  L     RLLL        +L +T+T AA AE+  R+ 
Sbjct: 5   LLDSPFDGRSLIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELRERIR 64

Query: 84  EIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
             +     + D   S++  + ++  + P+  D S+ R LL   +       + TIH FC+
Sbjct: 65  ARLADLLAVYDGTPSSDDFLNRLHARYPD--DASRRRLLL--AVHGFDEAAIFTIHGFCQ 120

Query: 142 AIMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKSTLA 178
             +Q    EA  +  S     D E    L+ +A +S LA
Sbjct: 121 RALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELA 159


>gi|145596260|ref|YP_001160557.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305597|gb|ABP56179.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 1144

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLL 66
           E ++ + L + T+ +  + + P     V A AGSGKT  +  RV+  L+AN++  P  +L
Sbjct: 27  ELAKLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVV-WLVANSYVQPEQVL 85

Query: 67  CLTHTKAAAAEMSHRV 82
            LT T+ AA E++HRV
Sbjct: 86  GLTFTRKAAGELAHRV 101


>gi|290958050|ref|YP_003489232.1| ATP-dependent DNA helicase II [Streptomyces scabiei 87.22]
 gi|260647576|emb|CBG70681.1| putative ATP-dependent DNA helicase II [Streptomyces scabiei 87.22]
          Length = 836

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++        
Sbjct: 90  IVAGAGSGKTRVLTHRIAHLLGERRVHPGQILAITFTNKAAGEMKERVEQLV-------- 141

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++   +   T
Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 172 SSFSIYDAADSKRLM 186


>gi|257066035|ref|YP_003152291.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
 gi|256797915|gb|ACV28570.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
          Length = 1121

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 23/129 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +LV R++RLL+ +     + + +T T  A+ EM  R+       + L +
Sbjct: 23  VSAAAGSGKTSVLVTRIIRLLIEDRKDIGSFIIVTFTNKASVEMKDRI------RTALEE 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEANI 153
           E+           K   SD+   +  L  +       +++T+H+FC  ++++ F    ++
Sbjct: 77  EL-----------KKKGSDLKFIKDQLKNLKHA----QIKTLHSFCADMLRENFYYFDDL 121

Query: 154 TSHFAIADE 162
           + +F +  E
Sbjct: 122 SPNFKVISE 130


>gi|320450685|ref|YP_004202781.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
 gi|320150854|gb|ADW22232.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
          Length = 621

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++ +A+  T  A V A  GSGKT  +V R+ RL+     P T+  +T TK AA EM  R+
Sbjct: 6  QEAVANHFTGPALVIAGPGSGKTRTVVHRIARLIRKGVDPETVTAVTFTKKAAGEMRERL 65

Query: 83 LEII 86
          + ++
Sbjct: 66 VHLV 69


>gi|300856480|ref|YP_003781464.1| putative ATP-dependent exonuclease [Clostridium ljungdahlii DSM
           13528]
 gi|300436595|gb|ADK16362.1| predicted ATP-dependent exonuclease [Clostridium ljungdahlii DSM
           13528]
          Length = 1240

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 27/146 (18%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAA 76
           T+S++     P  +  VSA AG+GKT +LV+R+++ + +   +     LL +T T AAA+
Sbjct: 14  TESQREAIFTPKCNLLVSAGAGTGKTAVLVERIIQEITSIDEDVDIDKLLVVTFTNAAAS 73

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ E I+       ++L +               SK     +T+L       + TI
Sbjct: 74  EMKERIAEAIS-------KLLESNYG------------SKNLQKQLTLLNQAN---IITI 111

Query: 137 HAFC-EAIMQQFPLEANITSHFAIAD 161
           HAFC + I   F L  ++  +F I D
Sbjct: 112 HAFCLKVIKSNFHL-IDLDPNFRICD 136


>gi|170099549|ref|XP_001880993.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644518|gb|EDR08768.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1055

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 38/148 (25%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A  GSGKT +L  R+  L+L +  P   +C +T T  AA EM  R               
Sbjct: 48  AGPGSGKTKVLTSRIAHLILNHHLPPFSICAVTFTNKAANEMRER--------------- 92

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
               +TK+ GK                  E    L++ T HA C   ++++     +  +
Sbjct: 93  ----LTKLIGK------------------ERTSQLRMGTFHALCARFLRKYAHLVKLAEN 130

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDN 184
           F + D E+SKK+I+   K   A +  +N
Sbjct: 131 FTVCDAEESKKIIQALLKPYTAYLASEN 158


>gi|269122166|ref|YP_003310343.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
 gi|268616044|gb|ACZ10412.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
          Length = 995

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 14/191 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHL 92
           + A+AG+GKT+ L    ++ L+       +  +T TK A +E+  RV   LE I+  +  
Sbjct: 5   IKASAGTGKTYSLALEYIKELILGTDFRKIYVMTFTKKATSEIRERVLLFLEEISEGTEA 64

Query: 93  SDEILSAEITKIQGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            DEIL      I+   P  + +  K + +   I+     +K+ TI +F + I  +   E 
Sbjct: 65  GDEILE----NIRKSDPGLTVNQEKMKIIYKDIIYNKDKIKIYTIDSFIKIIFDRIVAEK 120

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIETLISD 210
                +   D +++K++IE    + LA ++ +  + E  K+F       N E+ E LI  
Sbjct: 121 KHIYTYN-TDNDENKEVIE----NVLAELISNRYHMEKVKSFLLKERRRNLEEYEELIDQ 175

Query: 211 IISNRTALKLI 221
           +I NR   + I
Sbjct: 176 LIKNRWKFEFI 186


>gi|228474316|ref|ZP_04059051.1| recombination helicase AddA [Staphylococcus hominis SK119]
 gi|228271675|gb|EEK13022.1| recombination helicase AddA [Staphylococcus hominis SK119]
          Length = 1221

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 48/199 (24%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV + I   S L D
Sbjct: 30  VAAAAGSGKTAVLVERIIQKILKDEVDVDKLLVVTFTNLSAREMKHRVEQRIQQAS-LED 88

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P    +   R   I I +     ++ T+H+FC  ++QQ        
Sbjct: 89  --------------PKNEHLKSQR---IKIHQA----QISTLHSFCLKVIQQ-------- 119

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE--TLISDII 212
            H+ +   + + + I E +   L    +D   E+ +  YE      D DIE  TL+  + 
Sbjct: 120 -HYDVIQLDPNFRTISEVENVLLLEQSID---EVLEHHYE------DPDIEFLTLVEQLS 169

Query: 213 SNRTALKL-----IFFFFS 226
           ++R   +       F++FS
Sbjct: 170 NDRNDDRFREILKRFYYFS 188


>gi|255692788|ref|ZP_05416463.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Bacteroides finegoldii DSM 17565]
 gi|260621505|gb|EEX44376.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Bacteroides finegoldii DSM 17565]
          Length = 1624

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66
            Q++ +    +S+ + E +++   +R   V+A  GSGKT +LV ++   LLL +     LL
Sbjct: 1064 QKYKQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1122

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHL 92
             LT ++AAA E   R++E+I   +H 
Sbjct: 1123 MLTFSRAAATEFKQRLMELIGNAAHF 1148


>gi|225620088|ref|YP_002721345.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
 gi|225214907|gb|ACN83641.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
          Length = 665

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 38/132 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT ++ +R+  L+     PS +L +T T  AAAEM  R                
Sbjct: 24  AGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAAAEMRER---------------- 67

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
              ITK+  +KP +                   L V T H+FC  +++    +    ++F
Sbjct: 68  ---ITKLLKEKPKQ-------------------LVVSTFHSFCVRVLKGDIEKLGYKNNF 105

Query: 158 AIADEEQSKKLI 169
           +I     S+ LI
Sbjct: 106 SIYSSSDSRTLI 117


>gi|313847563|emb|CBY16551.1| putative UvrD/REP helicase [Chlamydophila psittaci RD1]
 gi|325507206|gb|ADZ18844.1| exodeoxyribonuclease V subunit beta [Chlamydophila psittaci 6BC]
 gi|328914196|gb|AEB55029.1| exodeoxyribonuclease V, beta subunit [Chlamydophila psittaci 6BC]
          Length = 1045

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 11/121 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLE-IITAWSH 91
           ++ A+AG+GKT  + Q VLR LL    +H   +L +T T AA  E+  R+ E +  A S 
Sbjct: 18  FLEASAGTGKTFTIEQIVLRALLEGSVSHVENILVVTFTNAATNELKLRIQENLKQAASQ 77

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-F 147
           L   I + E        P  S     + L + +   L +   + + TIH FC  ++QQ F
Sbjct: 78  LKSAITNPE----HPLPPYLSPPCDVKQLYMQVRNALASIDRMAIFTIHGFCNYVLQQHF 133

Query: 148 P 148
           P
Sbjct: 134 P 134


>gi|309389723|gb|ADO77603.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 1051

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 8/146 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA---WSHL 92
           + A+AG+GKT+ L    L  LL     S ++ +T TK A AE+ +R+L+ + A    S  
Sbjct: 5   IKASAGTGKTYRLSLEYLAALLKGIDFSEIIVMTFTKKATAEIKNRILKHLRALILGSPE 64

Query: 93  SDEILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            ++I++A + +IQ   P  K ++ +   +   ++     +K+ TI AF   I  +     
Sbjct: 65  KEDIIAA-LAEIQ---PELKVEVEQLEKIYKKMILNDEDIKIYTIDAFINQIFSRGIAPF 120

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTL 177
               ++ I D++Q++K+IEE  K  L
Sbjct: 121 LEIYNYQIIDQKQNEKIIEELLKKIL 146


>gi|227507848|ref|ZP_03937897.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227192686|gb|EEI72753.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 1254

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 23/191 (12%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81
           ++ +   P  +  VSA+AGSGKT +LV R++ ++     +   LL +T T AAA EM  R
Sbjct: 8   QRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAAAKEMRER 67

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +                     +Q +    +D    +HLL  I +      + T+ A+C+
Sbjct: 68  LR------------------GSLQSEFSKATDPESKKHLLTQIRKVAVA-DITTMDAYCQ 108

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISN 200
            ++ ++     I  +F +  +    +L++E     +   +   +E+    F ++ E  SN
Sbjct: 109 KLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFADLTENFSN 166

Query: 201 DEDIETLISDI 211
           D   E L + I
Sbjct: 167 DRSDEGLTNVI 177


>gi|218780684|ref|YP_002432002.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
 gi|218762068|gb|ACL04534.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 38/139 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  L  RV RL+ + A P+ +L LT T+ A+ EM  R           +  
Sbjct: 28  VIAGAGSGKTRTLTYRVARLVDSGAPPARILLLTFTRKASEEMLRR-----------AGV 76

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L  +   + G                            T H+F   +++++  +     
Sbjct: 77  LLGMDCDDVAGG---------------------------TFHSFSHQMLRRYAFKLGFDP 109

Query: 156 HFAIADEEQSKKLIEEAKK 174
            F I D    + LI+  KK
Sbjct: 110 GFVILDRPDCEALIDRLKK 128


>gi|260171310|ref|ZP_05757722.1| hypothetical protein BacD2_05540 [Bacteroides sp. D2]
 gi|315919621|ref|ZP_07915861.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693496|gb|EFS30331.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1624

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66
            Q++ +    +S+ + E +++   +R   V+A  GSGKT +LV ++   LLL +     LL
Sbjct: 1064 QKYKQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1122

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHL 92
             LT ++AAA E   R++E+I   +H 
Sbjct: 1123 MLTFSRAAATEFKQRLMELIGNAAHF 1148


>gi|227523105|ref|ZP_03953154.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii
           ATCC 8290]
 gi|227089709|gb|EEI25021.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii
           ATCC 8290]
          Length = 1254

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 23/191 (12%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81
           ++ +   P  +  VSA+AGSGKT +LV R++ ++     +   LL +T T AAA EM  R
Sbjct: 8   QRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAAAKEMRER 67

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +                     +Q +    +D    +HLL  I +      + T+ A+C+
Sbjct: 68  LR------------------GSLQSEFSKATDPESKKHLLTQIRKVAVA-DITTMDAYCQ 108

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISN 200
            ++ ++     I  +F +  +    +L++E     +   +   +E+    F ++ E  SN
Sbjct: 109 KLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFADLTENFSN 166

Query: 201 DEDIETLISDI 211
           D   E L + I
Sbjct: 167 DRSDEGLTNVI 177


>gi|87309169|ref|ZP_01091306.1| probable helicase [Blastopirellula marina DSM 3645]
 gi|87288160|gb|EAQ80057.1| probable helicase [Blastopirellula marina DSM 3645]
          Length = 1040

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           P +   + A+AGSGKT  L  R L +L +   P+ +L  T T+ AA E+  R++  +   
Sbjct: 3   PFQHRLIRASAGSGKTFQLSNRFLGVLASGDAPAEILATTFTRKAAGEILDRIMIRLAEA 62

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +   +++  AE+       P       A   L  + +    L+VQT+ +F   + Q F  
Sbjct: 63  ARDPNKL--AELNSFIEAAPVTPAACVAT--LRELTQQLHRLRVQTLDSFFIQVAQCFSF 118

Query: 150 EANITSHFAIADEEQSKKL----IEEAKKSTLASIMLD 183
           E      ++IADE    +L    IEE  +   A+++L+
Sbjct: 119 EMGFPPGWSIADEVDDSELRINAIEELLRENEAALVLE 156


>gi|33152201|ref|NP_873554.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP]
 gi|33148423|gb|AAP95943.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP]
          Length = 1198

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 15/130 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSH 91
           + A+AG+GKT  +    LRLLL     P T   +L +T TKAA  E+  R+   I A   
Sbjct: 17  IEASAGTGKTFTMANLYLRLLLGIGCQPLTVEEILVVTFTKAATEELRDRIRRNIKACRE 76

Query: 92  LSDEILSAEITKIQGKKPN-------KSDMSKARHLLITILETPGGL-KVQTIHAFCEAI 143
                   +  +I   K N       + D      L + I E    L  + TIH+FC+ I
Sbjct: 77  F---FCDYDPNQIDQNKDNFYSQLYERVDNLDEAKLRLRIAEREIDLASIFTIHSFCQKI 133

Query: 144 MQQFPLEANI 153
           + QF  ++ I
Sbjct: 134 LSQFAFDSGI 143


>gi|167762567|ref|ZP_02434694.1| hypothetical protein BACSTE_00923 [Bacteroides stercoris ATCC 43183]
 gi|167699673|gb|EDS16252.1| hypothetical protein BACSTE_00923 [Bacteroides stercoris ATCC 43183]
          Length = 1602

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66
            Q++ +    +S+ + E +++   +R   V+A  GSGKT +LV ++   LLL +     LL
Sbjct: 1042 QKYKQLFGQLSKRQME-IISDKESRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1100

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHL 92
             LT ++AAA E   R++E+I   +H 
Sbjct: 1101 MLTFSRAAATEFKQRLMELIGNATHF 1126


>gi|302771199|ref|XP_002969018.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii]
 gi|300163523|gb|EFJ30134.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii]
          Length = 1196

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 37/144 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A  GSGKT  +V R+L LL        +L +T T AAA EM  RV  ++         
Sbjct: 281 IVAGPGSGKTSTMVARILTLLNEGVDSKNILGMTFTTAAATEMMDRVAAVV--------- 331

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                     GK+ +K                   L + T H+FC  + +    + N TS
Sbjct: 332 ----------GKEASKE------------------LMISTFHSFCLQLCRSHAEKLNRTS 363

Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179
            F +    Q +K + EA +  L +
Sbjct: 364 EFLVYGASQQRKAVIEATRLALEA 387


>gi|227510906|ref|ZP_03940955.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri
           ATCC 11577]
 gi|227085858|gb|EEI21170.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri
           ATCC 11577]
          Length = 1254

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 23/191 (12%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81
           ++ +   P  +  VSA+AGSGKT +LV R++ ++     +   LL +T T AAA EM  R
Sbjct: 8   QRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAAAKEMRER 67

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +                     +Q +    +D    +HLL  I +      + T+ A+C+
Sbjct: 68  LR------------------GSLQSEFSKATDPESKKHLLTQIRKVAVA-DITTMDAYCQ 108

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISN 200
            ++ ++     I  +F +  +    +L++E     +   +   +E+    F ++ E  SN
Sbjct: 109 KLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFADLTENFSN 166

Query: 201 DEDIETLISDI 211
           D   E L + I
Sbjct: 167 DRSDEGLTNVI 177


>gi|314936814|ref|ZP_07844161.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655433|gb|EFS19178.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp.
           hominis C80]
          Length = 1224

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 48/199 (24%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R+++ +L +      LL +T T  +A EM HRV + I   S L D
Sbjct: 33  VAAAAGSGKTAVLVERIIQKILKDEVDVDKLLVVTFTNLSAREMKHRVEQRIQQAS-LED 91

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P    +   R   I I +     ++ T+H+FC  ++QQ        
Sbjct: 92  --------------PKNEHLKSQR---IKIHQA----QISTLHSFCLKVIQQ-------- 122

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE--TLISDII 212
            H+ +   + + + I E +   L    +D   E+ +  YE      D DIE  TL+  + 
Sbjct: 123 -HYDVIQLDPNFRTISEVENVLLLEQSID---EVLEHHYE------DPDIEFLTLVEQLS 172

Query: 213 SNRTALKL-----IFFFFS 226
           ++R   +       F++FS
Sbjct: 173 NDRNDDRFREILKRFYYFS 191


>gi|119717815|ref|YP_924780.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614]
 gi|119538476|gb|ABL83093.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614]
          Length = 797

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 11/75 (14%)

Query: 23 EQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
          E+LL   ++P R+A         V A AGSGKT +L +R+  L+    AHP ++L +T T
Sbjct: 20 EELLEGLNEPQRAAVVHEGAPLLVVAGAGSGKTRVLTRRIAWLISERKAHPGSILAITFT 79

Query: 72 KAAAAEMSHRVLEII 86
            AAAEM  RV +++
Sbjct: 80 NKAAAEMKERVEDLV 94


>gi|187924915|ref|YP_001896557.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187716109|gb|ACD17333.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 720

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E +D  + T +       P  +  V A AGSGKT+ L  RV  L++  A P  +L LT +
Sbjct: 37  EAVDYGADTPTA------PPGALLVIAGAGSGKTNTLAHRVANLVVKGADPRRILLLTFS 90

Query: 72  KAAAAEMSHRVLEIITA 88
           + AA EM+ RV  I  A
Sbjct: 91  RRAALEMTRRVTRIAGA 107


>gi|315637850|ref|ZP_07893040.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter
           upsaliensis JV21]
 gi|315482091|gb|EFU72705.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter
           upsaliensis JV21]
          Length = 909

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 17/128 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + L+L  A    +L +T TK A  EM  RV+E    +     E
Sbjct: 10  LEASAGSGKTFALSMRFVALILNGAKIDEILAITFTKKATNEMKKRVIENFLTFDKKEAE 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETP------GGLKVQTIHAFCEAIMQQFPL 149
             + E+ K+         ++K +  LI + +          LK+ T  A    I++ F L
Sbjct: 70  --TKELCKL---------LAKDKEELIRLRDAKKEEFLRKNLKIYTFDALFSQILRSFAL 118

Query: 150 EANITSHF 157
              + S F
Sbjct: 119 NLGLMSDF 126


>gi|296127315|ref|YP_003634567.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
 gi|296019131|gb|ADG72368.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
          Length = 666

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 38/132 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT ++ +R+  L+     PS +L +T T  AA+EM  R                
Sbjct: 24  AGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAASEMRER---------------- 67

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
              ITK+  +KP +                   L V T H+FC  +++    +    S+F
Sbjct: 68  ---ITKLLKEKPKQ-------------------LVVSTFHSFCVRVLKGDIEKLGYKSNF 105

Query: 158 AIADEEQSKKLI 169
           +I     S+ LI
Sbjct: 106 SIYSSSDSRTLI 117


>gi|225019255|ref|ZP_03708447.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum
           DSM 5476]
 gi|224947886|gb|EEG29095.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum
           DSM 5476]
          Length = 1188

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 29/197 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +SA+AGSGKT +L  RV+  L      +    LL +T T+AAA EM  R+          
Sbjct: 37  LSASAGSGKTFVLSSRVVYKLAHRERETRADRLLVVTFTRAAAKEMRTRI---------- 86

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                +A++ ++  + P+ + + + + LL          K+ TI +FC  +++       
Sbjct: 87  -----TAKLDELVARFPDDAKLQRQKLLL-------SRAKITTIDSFCADLVRDNFDRLG 134

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           ++  F IADE +  ++ +EA    L  +  D   +  K F  + +  + +D   L   ++
Sbjct: 135 LSPDFRIADETELAQIQDEA----LDELFEDYYSQGDKEFAALSDSFSLKDDSRLKGIVL 190

Query: 213 SNRTALKLIFFFFSYLW 229
           S  + ++   F   +LW
Sbjct: 191 SIYSRIRSNPFPLEWLW 207


>gi|224538975|ref|ZP_03679514.1| hypothetical protein BACCELL_03872 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519421|gb|EEF88526.1| hypothetical protein BACCELL_03872 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1624

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66
            Q++++    +S+ + E +++   +R   V+A  GSGKT +LV ++   LLL +     LL
Sbjct: 1064 QKYNQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1122

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHL 92
             LT ++AAA E   R++E+I   +H 
Sbjct: 1123 MLTFSRAAATEFKQRLMELIGNAAHF 1148


>gi|149278325|ref|ZP_01884463.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39]
 gi|149231091|gb|EDM36472.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39]
          Length = 1080

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 3/127 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AGSGKT  L    L +LL+       +L +T T  A  EM  R++E++  ++  ++
Sbjct: 10  LQASAGSGKTFSLTAHYLTILLSGETKYREILAVTFTNKATEEMKTRIMEVLRGFATAAE 69

Query: 95  EILSAEITKIQGKKP-NKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           E+    +  ++G    ++ ++  K+  +   IL       V TI  F + +++ F  E  
Sbjct: 70  EVEDYRLLVLKGHPDLDRQELQEKSARIYKRILHDYSRFSVSTIDGFVQKVIRGFAFELG 129

Query: 153 ITSHFAI 159
           + S +A+
Sbjct: 130 LDSGYAL 136


>gi|39935869|ref|NP_948145.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39649723|emb|CAE28244.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009]
          Length = 687

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          P     V A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEM+ RV  I
Sbjct: 27 PCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILLMTFSRRAAAEMTRRVERI 82


>gi|154933919|gb|ABS88757.1| StkZ [Myxococcus xanthus]
          Length = 651

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS------- 90
           A AGSGKT  L  RV R+L     P+ +L LT T  AA EM+ RV E+  A+        
Sbjct: 3   AGAGSGKTRTLTFRVARMLERGVPPAGILLLTFTNKAAREMTRRVEELAGAFVDVRRILG 62

Query: 91  ---HLSDEILSAEITKIQGKKPNKS--DMSKARHLLITIL 125
              H +  +L  +   + G   N +  D   AR L++T +
Sbjct: 63  GTFHHAAHVLLRQYAGVLGFSTNFTVLDREDARDLMVTCI 102


>gi|72160928|ref|YP_288585.1| DNA helicase [Thermobifida fusca YX]
 gi|71914660|gb|AAZ54562.1| putative DNA helicase [Thermobifida fusca YX]
          Length = 1108

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77
           T  +  + + P R   V A AGSGK+  +  RV+  L+AN H  P  +L LT T+ AAAE
Sbjct: 20  TPEQAAVIAAPLRPGLVVAGAGSGKSETMAARVV-WLVANGHVRPEQVLGLTFTRKAAAE 78

Query: 78  MSHRV---LEIITAWSHLSDEILSAEIT 102
           ++ RV   L+ +     + D++L  E T
Sbjct: 79  LAERVRKRLDQLRGAGVVPDDVLDGEPT 106


>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
 gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
          Length = 866

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 48/189 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +  + ++++  D   S  + A AG+GKT  L +RV  L+++  A P  +LCLT T  A
Sbjct: 20  LHAPNEQQRVVIGDTAHSILLLAGAGTGKTDTLARRVANLIVSGAAAPEEILCLTFTNRA 79

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EM  R+            E ++ E  +                           + V 
Sbjct: 80  CREMIERI------------ETVAGEAAR--------------------------DVAVH 101

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTL--------ASIMLDNN 185
           T+H+FC  ++++ P    ++   F + D   + +++  A + TL        A I+LD  
Sbjct: 102 TVHSFCARMLRETPAARTDLGRDFTVCDAADALEIVRLAVERTLGREIDGRSAQILLDFI 161

Query: 186 EELKKAFYE 194
             +K A  E
Sbjct: 162 GLVKDAMLE 170


>gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
           ATCC 19977]
 gi|169240116|emb|CAM61144.1| Putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus]
          Length = 807

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL A +  P  +L +T T  AAAEM  RV  I+        
Sbjct: 44  IVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAAAEMRERVGRIVA------- 96

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                   ++Q                         + V T H+ C  I++ Q  L   +
Sbjct: 97  -------NRVQ------------------------SMWVSTFHSSCVRILRNQASLLPGL 125

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 126 NSNFSIYDSDDSRRLLQ 142


>gi|256751132|ref|ZP_05492014.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750038|gb|EEU63060.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 119

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 26/116 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++ L+    +P     LL +T T AAA+EM  R+ E + A    
Sbjct: 22  VAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAASEMRERIAEALIA---- 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQF 147
                      I  + P    ++    LL           + TIH+FC E +   F
Sbjct: 78  -----------ILDQNPEDKRLANQLTLL-------NKATITTIHSFCLEVVRNNF 115


>gi|70726984|ref|YP_253898.1| hypothetical protein SH1983 [Staphylococcus haemolyticus JCSC1435]
 gi|123659798|sp|Q4L4Y3|ADDA_STAHJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|68447708|dbj|BAE05292.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 1225

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 45/189 (23%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +   V+A AGSGKT +LV+R+++ ++ +      LL +T T  +A EM HRV + I   S
Sbjct: 26  QDVLVAAAAGSGKTAVLVERIIQKIIRDEIDVDKLLVVTFTNLSAREMKHRVDQRIQQAS 85

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            + D              P    +   R   I I +     ++ T+H+FC  I+QQ    
Sbjct: 86  -IED--------------PRNEHLKNQR---IKIHQA----QISTLHSFCLKIIQQ---- 119

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIE--TL 207
                H+ + D + + + I     S + +++L     L+++  E+LE   D  DIE  TL
Sbjct: 120 -----HYDVIDLDPNFRTI-----SDVENVLL-----LEQSIDEVLEKHYDTPDIEFLTL 164

Query: 208 ISDIISNRT 216
           +  + S+R 
Sbjct: 165 VEQLSSDRN 173


>gi|212550968|ref|YP_002309285.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
 gi|212549206|dbj|BAG83874.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
          Length = 743

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          +++++ E ++ +D    + V A AGSGKT ++  ++  LL     P ++L LT T  AA 
Sbjct: 8  LNESQREAVIYNDG--PSLVIAGAGSGKTRVITYKIAYLLKNGISPHSILALTFTNKAAR 65

Query: 77 EMSHRVLEII 86
          EM  RV EII
Sbjct: 66 EMKVRVTEII 75


>gi|149194507|ref|ZP_01871603.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2]
 gi|149135251|gb|EDM23731.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2]
          Length = 673

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 17 ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ   A+ P     V A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3  LSKLNNEQFQAATAPFGFNLVIASAGTGKTSTIVGRIAHLLENGLKPEEILLLTFTNKAA 62

Query: 76 AEMSHRVLEII 86
           EM  RV ++I
Sbjct: 63 IEMKERVSQVI 73


>gi|255326665|ref|ZP_05367741.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296]
 gi|255295882|gb|EET75223.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296]
          Length = 990

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL  + A P  +L +T T  AAAEM  R+  ++        
Sbjct: 167 IVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAAAEMRERIEALVG------- 219

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                +A+H+ I+           T H+FC  ++++      + 
Sbjct: 220 --------------------PRAKHMWIS-----------TFHSFCVRVLRREAAALGLK 248

Query: 155 SHFAIADEEQSKKLI 169
           S F I D   S++L+
Sbjct: 249 STFTIYDSTDSQRLL 263


>gi|168334042|ref|ZP_02692261.1| Recombination helicase AddA [Epulopiscium sp. 'N.t. morphotype B']
          Length = 1186

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 30/182 (16%)

Query: 22  SEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST----LLCLTHTKAAAA 76
           +EQ LA D   ++  VSA AGSGKT +L +RV++ +L            L +T T AAA+
Sbjct: 5   TEQQLAIDLQDKNILVSAAAGSGKTAVLTERVIKRVLNTGKNRVDIDRFLIVTFTNAAAS 64

Query: 77  EMSHRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           EM  R+ +++  A S  +D     E+  +Q +                 L   G   + T
Sbjct: 65  EMKERIEIKLGDALSTAAD---GEEVDYLQKQ-----------------LGLLGKASIST 104

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++    E  +  +     E+++  L   A    L +      EE   AFY++
Sbjct: 105 IHSFCGKLIRTHFNELGLEPNMRTCTEQEATLLQNLAVTDILTAAF----EEESDAFYQL 160

Query: 196 LE 197
            +
Sbjct: 161 CD 162


>gi|192291516|ref|YP_001992121.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
 gi|192285265|gb|ACF01646.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
          Length = 687

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          P     V A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEM+ RV  I
Sbjct: 27 PCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILLMTFSRRAAAEMTRRVERI 82


>gi|294630996|ref|ZP_06709556.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14]
 gi|292834329|gb|EFF92678.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14]
          Length = 841

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV  ++        
Sbjct: 105 IVAGAGSGKTRVLTHRIAYLLAERGVHPGQILAITFTNKAAGEMKERVEHLV-------- 156

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++       T
Sbjct: 157 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKRLGFT 186

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 187 SSFSIYDAADSKRLM 201


>gi|224826111|ref|ZP_03699214.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
 gi|224601748|gb|EEG07928.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
          Length = 715

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          DL+S    EQL A   P +SA V A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3  DLLSGLNPEQLSAVTWPAKSALVLAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 63 KAAREMQTRLGAMI 76


>gi|295099324|emb|CBK88413.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Eubacterium
           cylindroides T2-87]
          Length = 492

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 33/198 (16%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           +K++Q       ++  VSA+AGSGKT +LV+R+ +L+L +      +L +T T+ AA EM
Sbjct: 4   SKAQQQAIDLRNKNILVSASAGSGKTSVLVERLCKLVLVDKISIDRILAMTFTEDAANEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + + A +  +D I S                       + +LET     + TI  
Sbjct: 64  KDRLKKRLQAETQ-TDYIQSQ----------------------LALLETAS---ICTIDG 97

Query: 139 FCEAIMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEI 195
           FC +I++ +  +  I+     ++A   Q+ K   +A      SI  + N+ +K K F+  
Sbjct: 98  FCLSIVKNYYYKIPISYKMSKSVASSAQANKAFLDAYNEACNSI--NTNDFVKLKLFFSS 155

Query: 196 LEISNDEDIETLISDIIS 213
           L  + D DI + I D+I+
Sbjct: 156 LGKTED-DILSNIRDLIN 172


>gi|149916945|ref|ZP_01905446.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis
           pacifica SIR-1]
 gi|149822223|gb|EDM81614.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis
           pacifica SIR-1]
          Length = 1027

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ++A AG+GKTH LV   L L           A   P+ +  +T T+ AA E+  R++   
Sbjct: 29  LAAGAGAGKTHALVTVALGLYAGTPGEAGGRAPLEPTEVWAVTFTEKAARELRQRIVARA 88

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           +A +   +  L+ E   +      +    + R +L  +   P G    T H+ C  +++ 
Sbjct: 89  SALARDPEGALADEPELVAMLGDARPSAGRWRAILEQLPLAPIG----TFHSLCAQVLRS 144

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           + +EA +   F + +E  + +L++      L   + D +   + A
Sbjct: 145 YAVEAGVDPSFEVLEENGAAELLDGVLDEVLLRELEDPDSHTRAA 189


>gi|256396908|ref|YP_003118472.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363134|gb|ACU76631.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 1124

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 34/169 (20%)

Query: 23  EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           EQL A + P   A + A AGSGKT ++  RV+ L+      P  +L LT T  AAAE++ 
Sbjct: 19  EQLEAITAPLEPAVIVAGAGSGKTTVMAARVVWLVGTGQVGPHEVLGLTFTNKAAAELAE 78

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +   A   L DE L           P+ SD++          E+ G   V T HA+ 
Sbjct: 79  RIRK---ALRKLEDEELD---------DPD-SDLT----------ESVGEPTVSTYHAYA 115

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + ++++  L   +         E S +L+ +A +  LA   +   +EL+
Sbjct: 116 DRLIKEHGLRLGL---------EPSARLLADATRYQLAVTAVRGPKELR 155


>gi|256421211|ref|YP_003121864.1| exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588]
 gi|256036119|gb|ACU59663.1| Exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588]
          Length = 1152

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-LEIITAWS 90
           S  + A+AG+GKT+ +   VLRL+L N      +L +T TKAA AE+  R+ L + TA+ 
Sbjct: 20  SNLIEASAGTGKTYSIAILVLRLVLENGLSIKEILMVTFTKAAVAELEERIRLFVRTAYK 79

Query: 91  -HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                E     I ++  +   ++ ++  +  L   +       V TIH+FC+  + +F  
Sbjct: 80  ISQGQETRDENIFRLVEEAVERNGLAAVQQQLRDAVLFLDETAVLTIHSFCQKTLNEFAF 139

Query: 150 EANITSHFAIADEEQSKKLIEE 171
           E +    F     + +K LI E
Sbjct: 140 ETD--QLFGAEMIQDTKTLIAE 159


>gi|217968983|ref|YP_002354217.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506310|gb|ACK53321.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 745

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 31/51 (60%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT  L  RV RL  A A P+ +L LT ++ AA EM  RV  I+
Sbjct: 58  VIAGAGSGKTGTLAHRVARLAAAGADPARILLLTFSRRAADEMGRRVRRIL 108


>gi|329942325|ref|ZP_08291135.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10]
 gi|328815235|gb|EGF85223.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10]
          Length = 724

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 11/121 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLE-IITAWSH 91
           ++ A+AG+GKT  + Q VLR LL    +H   +L +T T AA  E+  R+ E +  A S 
Sbjct: 18  FLEASAGTGKTFTIEQIVLRALLEGSVSHVENILVVTFTNAATNELKLRIQENLKQAASQ 77

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-F 147
           L   I + E        P  S     + L + +   L +   + + TIH FC  ++QQ F
Sbjct: 78  LKSAITNPE----HPLPPYLSPPCDVKQLYMQVRNALASIDRMAIFTIHGFCNYVLQQHF 133

Query: 148 P 148
           P
Sbjct: 134 P 134


>gi|329955597|ref|ZP_08296505.1| ATP-dependent DNA helicase, RecQ family [Bacteroides clarus YIT
            12056]
 gi|328526000|gb|EGF53024.1| ATP-dependent DNA helicase, RecQ family [Bacteroides clarus YIT
            12056]
          Length = 1624

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 24   QLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRV 82
            ++++   +R   V+A  GSGKT +LV ++   LLL +     LL LT ++AAA E   R+
Sbjct: 1079 EIISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQRL 1138

Query: 83   LEIITAWSHL 92
            +E+I   +H 
Sbjct: 1139 MELIGNAAHF 1148


>gi|29830006|ref|NP_824640.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607116|dbj|BAC71175.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 861

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   + HP  +L +T T  AA EM  RV +++        
Sbjct: 90  IVAGAGSGKTRVLTHRIAHLLGERHVHPGQILAITFTNKAAGEMKERVEQLV-------- 141

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++       T
Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKRLGFT 171

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 172 SSFSIYDAADSKRLM 186


>gi|316934039|ref|YP_004109021.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315601753|gb|ADU44288.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 687

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEM+ RV  I
Sbjct: 33 VIAGAGSGKTNTLAHRVAHLVVGGADPYRILLMTFSRRAAAEMTRRVERI 82


>gi|301156005|emb|CBW15476.1| DNA-dependent ATPase I and helicase II [Haemophilus parainfluenzae
           T3T1]
          Length = 725

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 37/165 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4   SELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ + ++   H    +                                 
Sbjct: 62  FTNKAAAEMRHRIQDTLS--KHAQSNLF-------------------------------- 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           G+ + T H+    +++   L+ N+   F I D E   +L++   K
Sbjct: 88  GMWIGTFHSIAHRLLRAHHLDVNLPQDFQILDSEDQLRLVKRLMK 132


>gi|107022515|ref|YP_620842.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054]
 gi|105892704|gb|ABF75869.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia AU 1054]
          Length = 846

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 62  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 121

Query: 73  AAAAEMSHRV 82
            AA EM  R+
Sbjct: 122 KAAREMMARL 131


>gi|167762884|ref|ZP_02435011.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC
           43183]
 gi|167699224|gb|EDS15803.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC
           43183]
          Length = 1151

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 13/133 (9%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L ++   W    D 
Sbjct: 32  ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKE--DP 89

Query: 96  ILSAEITKIQ---GKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              A + +I+    KKP  + +S      +A   L  +L      +V+TI +F +++M+ 
Sbjct: 90  ASDAYLKRIKEDLAKKPETASLSDRELRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRN 149

Query: 147 FPLEANITSHFAI 159
              E  ++ +  I
Sbjct: 150 LARELELSPNLNI 162


>gi|312130397|ref|YP_003997737.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132]
 gi|311906943|gb|ADQ17384.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132]
          Length = 757

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L+     P  +L LT T  AA EM HR+ ++I
Sbjct: 27 AGAGSGKTRVLTYRIAYLIEKGVDPFNILALTFTNKAAEEMRHRIEKVI 75


>gi|326790761|ref|YP_004308582.1| recombination helicase AddA [Clostridium lentocellum DSM 5427]
 gi|326541525|gb|ADZ83384.1| recombination helicase AddA [Clostridium lentocellum DSM 5427]
          Length = 1251

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 22/127 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAWS 90
           VSA AGSGKT +L +RV++ ++ +           L +T T AAA EM  R+L+ ++ + 
Sbjct: 20  VSAAAGSGKTAVLTERVMKRIIGSEQEVPIEIDRFLIVTFTSAAAGEMKERILQKLSDYM 79

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC----EAIMQQ 146
           +   E L            N+ ++ K  ++   +   P    + TIH+FC     A   +
Sbjct: 80  NGLQENL------------NEENLKKIDYIERQMALVPQA-SISTIHSFCLKTIRAYFNR 126

Query: 147 FPLEANI 153
             ++ NI
Sbjct: 127 LDIDPNI 133


>gi|148272377|ref|YP_001221938.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
          subsp. michiganensis NCPPB 382]
 gi|147830307|emb|CAN01241.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
          subsp. michiganensis NCPPB 382]
          Length = 1091

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCL 68
          +E +DL S T+ ++ +   P     V A AGSGKT  +  RV+  LLAN H     +L L
Sbjct: 26 AEALDLPSPTEQQRRVIESPLEPGLVVAGAGSGKTETMASRVV-WLLANGHVGVEEILGL 84

Query: 69 THTKAAAAEMSHRV 82
          T T+ AA E+  R+
Sbjct: 85 TFTRKAAGELGVRI 98


>gi|78213176|ref|YP_381955.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus
           sp. CC9605]
 gi|78197635|gb|ABB35400.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus
           sp. CC9605]
          Length = 1226

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 17/127 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84
           + A+AG+GKT  L    LRL+    HP   LL +T T AAA E+  R+          LE
Sbjct: 35  LEASAGTGKTFALAHLCLRLITEADHPLEALLVVTFTDAAAEELRSRIGQRLQQALQGLE 94

Query: 85  IITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            +     ++  D +L+  +    G +P  +     RHLL+  LE      + TIH FC  
Sbjct: 95  QLDQGMKAYAPDPVLADWLA---GSEPGDARQRWIRHLLVA-LEQLDRADITTIHGFCRR 150

Query: 143 IMQQFPL 149
            +++  L
Sbjct: 151 SLRRLAL 157


>gi|320527942|ref|ZP_08029108.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei
           F0204]
 gi|320131568|gb|EFW24132.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei
           F0204]
          Length = 743

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 39/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R++ L+   +  P+ +L +T T  AA EM  RV              
Sbjct: 44  AGAGSGKTRVLTMRIVHLIEDEDVWPTKILAITFTNKAANEMKERV-------------- 89

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                R++L +    P    V TIH+ C  I+++  +      +
Sbjct: 90  ---------------------RNMLASQTSAPW---VSTIHSLCVRILREDIIAMGYPRN 125

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D E  K +++EA K
Sbjct: 126 FTIMDTEDQKSVLKEAYK 143


>gi|313884923|ref|ZP_07818675.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619614|gb|EFR31051.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 787

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 45/187 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           ++IDL++  + + +L ++      ++A AGSGKT +L  R+  L+ A   +P  +L +T 
Sbjct: 6   KSIDLLNDRQRQAVLTTEG--PVLIAAGAGSGKTRVLTHRIAYLVQAKQVNPWNILAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++           +AE                              
Sbjct: 64  TNKAANEMKERVQALVGP---------AAE-----------------------------S 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T HA C  I+++   +   +S+F I D+ +   L+    K+ L  + LD  +   K
Sbjct: 86  IWVSTFHAMCARILRREAAKVGYSSNFTIIDQGEQATLM----KNILKELNLDGKQFNYK 141

Query: 191 AFYEILE 197
            F  +++
Sbjct: 142 DFLYVID 148


>gi|88811284|ref|ZP_01126540.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231]
 gi|88791823|gb|EAR22934.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231]
          Length = 736

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 45/195 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           + S  ID ++  + E + A  P     V A AGSGKT +L  R   LL A  A   ++L 
Sbjct: 13  DSSNLIDSLNAAQREAVTA--PCGRTLVLAGAGSGKTRVLTHRAAWLLQAEEASAYSILA 70

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+  ++                                         
Sbjct: 71  VTFTNKAAAEMRGRIAGLVGI--------------------------------------A 92

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++    EA +  HF I D E  ++LI    + TL ++ +D +  
Sbjct: 93  AGGMWIGTFHGLAHRLLRLHWREAGLPQHFQILDAEDQRRLI----RRTLRNLEIDESRW 148

Query: 188 LKKAFYEILEISNDE 202
             +     +    DE
Sbjct: 149 PPRQIQGFINARKDE 163


>gi|288926530|ref|ZP_06420448.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17]
 gi|288336672|gb|EFC75040.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17]
          Length = 1116

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 14/163 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    +RL++ N     T+L +T T  A  EM  R+L ++   W   +D+
Sbjct: 9   ASAGSGKTFTLATEYIRLVIDNPTAYRTILAVTFTNKATEEMKLRILSQLYGIWR--ADK 66

Query: 96  ILSAEITKIQ--GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                  K++   + P +    +A   L  ++      +V+TI  F +++++    E ++
Sbjct: 67  ASEGYYNKVKETSELPEREIRKRAGMALRNLIHNYNYFRVETIDTFFQSVLRNLARELDL 126

Query: 154 TSHFAIA------DEEQSKKLIE--EAKKSTLASIMLDNNEEL 188
           T++  I       +++   +LIE  +AK   L  IM   NE +
Sbjct: 127 TANLRIGLNDYQVEQQAVDRLIEDLDAKNPVLGWIMDYINENI 169


>gi|242045726|ref|XP_002460734.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor]
 gi|241924111|gb|EER97255.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor]
          Length = 1185

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A  GSGKT  +V RVL LL     PS +L +T T AAA+EM  R+  ++
Sbjct: 325 IVAGPGSGKTSTMVGRVLTLLKEGIPPSNILAMTFTTAAASEMRERIGTVV 375


>gi|256831910|ref|YP_003160637.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603]
 gi|256685441|gb|ACV08334.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603]
          Length = 833

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL    A PS +L +T T  AAAEM  RV++I+
Sbjct: 69  IVAGAGSGKTRVLTHRIAWLLATGRAWPSEILAITFTNKAAAEMRERVIQIV 120


>gi|191638484|ref|YP_001987650.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23]
 gi|251764527|sp|B3WEJ1|ADDA_LACCB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|190712786|emb|CAQ66792.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23]
 gi|327382519|gb|AEA53995.1| ATP-dependent nuclease subunit A [Lactobacillus casei LC2W]
 gi|327385716|gb|AEA57190.1| ATP-dependent nuclease subunit A [Lactobacillus casei BD-II]
          Length = 1234

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 17/153 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
           T S+Q   +       VSA+AGSGKT +LV+R++ ++L  +A  + +L +T T+AA AEM
Sbjct: 5   TTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATAEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++                  + K   ++ ++      RHL   I       K+ T+ A
Sbjct: 65  RTKI---------------QTALKKALTERRHELSGEDRRHLANQIAMVNAA-KISTLDA 108

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           F   I+Q +    ++   F +  +E  + +++E
Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141


>gi|222084834|ref|YP_002543363.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter
          K84]
 gi|221722282|gb|ACM25438.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter
          K84]
          Length = 689

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEM  RV  I
Sbjct: 34 VIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRAAAEMGRRVERI 83


>gi|254525779|ref|ZP_05137831.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221537203|gb|EEE39656.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 1208

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L   + + +L  
Sbjct: 15  VEASAGTGKSFTLSHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKIL---SRFHNLKL 71

Query: 95  EILSAEITKIQGKKP----NKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQ 146
            + S    KI         N  D  K++  +I+     +     LKV T HAFC  I+ +
Sbjct: 72  YLQSHNEIKIDNTLKDWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDE 131

Query: 147 FPLEANIT 154
           + +E  +T
Sbjct: 132 YSIEIGLT 139


>gi|116494973|ref|YP_806707.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           casei ATCC 334]
 gi|122263609|sp|Q038V7|ADDA_LACC3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116105123|gb|ABJ70265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus casei
           ATCC 334]
          Length = 1234

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 17/153 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
           T S+Q   +       VSA+AGSGKT +LV+R++ ++L  +A  + +L +T T+AA AEM
Sbjct: 5   TTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATAEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++                  + K   ++ ++      RHL   I       K+ T+ A
Sbjct: 65  RTKI---------------QTALKKALTERRHELSGEDRRHLANQIAMVNAA-KISTLDA 108

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           F   I+Q +    ++   F +  +E  + +++E
Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141


>gi|239631427|ref|ZP_04674458.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525892|gb|EEQ64893.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 1234

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 17/153 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
           T S+Q   +       VSA+AGSGKT +LV+R++ ++L  +A  + +L +T T+AA AEM
Sbjct: 5   TTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATAEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++                  + K   ++ ++      RHL   I       K+ T+ A
Sbjct: 65  RTKI---------------QTALKKALTERRHELSGEDRRHLANQIAMVNAA-KISTLDA 108

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           F   I+Q +    ++   F +  +E  + +++E
Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141


>gi|226942221|ref|YP_002797294.1| DNA-dependent helicase II [Azotobacter vinelandii DJ]
 gi|226717148|gb|ACO76319.1| DNA helicase II, UvrD [Azotobacter vinelandii DJ]
          Length = 726

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L+ + NA P  +L +T T  AAAEM  R+ +++  
Sbjct: 23  PLGPRLVLAGAGSGKTRVLVHRIAWLIEVENASPHAILAVTFTNKAAAEMRTRIEQLLGT 82

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 +P G+ + T H     +++   
Sbjct: 83  --------------------------------------SPMGMWIGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA +  +F I D +  ++L++
Sbjct: 105 QEAGLAENFQILDADDQQRLVK 126


>gi|294674328|ref|YP_003574944.1| UvrD/REP family ATP-dependent DNA helicase [Prevotella ruminicola
           23]
 gi|294472390|gb|ADE81779.1| ATP-dependent DNA helicase, UvrD/REP family [Prevotella ruminicola
           23]
          Length = 1075

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL--S 93
           A+AGSGKT  L    +RLL+ N      +L +T T  A  EM  R+L ++   W  L  S
Sbjct: 14  ASAGSGKTFTLATEYIRLLVENPQSYRNILAVTFTNKATEEMKMRILSQLYGIWKQLPES 73

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D  L    TK  G KP +    +A   L  +       +V+TI  F +++++    E ++
Sbjct: 74  DNYLQNIQTKT-GLKP-EVISERAGIALNNLTHNYNYFRVETIDTFFQSVLRNMARELDL 131

Query: 154 TSHFAIA 160
           T++  I 
Sbjct: 132 TTNLRIG 138


>gi|227535023|ref|ZP_03965072.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|301066540|ref|YP_003788563.1| ATP-dependent exoDNAse [Lactobacillus casei str. Zhang]
 gi|227187338|gb|EEI67405.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|300438947|gb|ADK18713.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           casei str. Zhang]
          Length = 1234

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 17/153 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
           T S+Q   +       VSA+AGSGKT +LV+R++ ++L  +A  + +L +T T+AA AEM
Sbjct: 5   TTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATAEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++                  + K   ++ ++      RHL   I       K+ T+ A
Sbjct: 65  RTKI---------------QTALKKALTERRHELSGEDRRHLANQIAMVNAA-KISTLDA 108

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           F   I+Q +    ++   F +  +E  + +++E
Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141


>gi|206559816|ref|YP_002230580.1| putative helicase [Burkholderia cenocepacia J2315]
 gi|198035857|emb|CAR51748.1| putative helicase [Burkholderia cenocepacia J2315]
          Length = 818

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 34  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 93

Query: 73  AAAAEMSHRV 82
            AA EM  R+
Sbjct: 94  KAAREMMARL 103


>gi|188585100|ref|YP_001916645.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349787|gb|ACB84057.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 726

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT +L  R+  LL     HP  +L LT T  AA EM  RV  I+  
Sbjct: 27 VLAGAGSGKTKVLTYRIAYLLETKGIHPEQILALTFTNKAAGEMKERVQTIVEG 80


>gi|325107376|ref|YP_004268444.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis
           DSM 5305]
 gi|324967644|gb|ADY58422.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis
           DSM 5305]
          Length = 770

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 40/155 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T S+Q           V A  GSGKT ++ QRV RL+    +P  +L +T T  AA+
Sbjct: 15  IQLTPSQQAAVEHVEGPMLVLAGPGSGKTRVVTQRVARLIEKGINPWNILAITFTNKAAS 74

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS R                      +QG       ++  R+L ++           T 
Sbjct: 75  EMSER----------------------LQG-------LTDTRNLWVS-----------TF 94

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           H FC  +++Q      +  +F I D    K+ I++
Sbjct: 95  HRFCANVLRQRANVVGLQQNFTILDSADQKQAIKQ 129


>gi|304313385|ref|YP_003812983.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1]
 gi|301799118|emb|CBL47361.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1]
          Length = 738

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 42/153 (27%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
           Q ++SD  R   V A AGSGKT +LV R+  L++A    P  +L +T T  AAAEM HR 
Sbjct: 21  QAVSSDANR-LLVLAGAGSGKTRVLVHRIAWLVIARGLSPRGILAVTFTNKAAAEMRHR- 78

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCE 141
                                                 L T+L+ P G + V T H    
Sbjct: 79  --------------------------------------LQTLLQIPQGAMWVGTFHGIAH 100

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            +++    EA +   F + D +  +++++   +
Sbjct: 101 RLLRLHWQEAKLPEQFQVMDSDDQQRVLKRVMR 133


>gi|315304458|ref|ZP_07874741.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596]
 gi|313627172|gb|EFR96022.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596]
          Length = 1236

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 41/208 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV R++  L+      +   LL +T T A+AAEM  R+ + +      
Sbjct: 31  VAAAAGSGKTAVLVTRIIEKLIDETVKWNVDELLIVTFTNASAAEMKFRIGKAL------ 84

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +E L         + P+ + + K   LL           + T+H+FC  I+++   EA+
Sbjct: 85  -EEALV--------QNPDSAHLKKQVALL-------NYASISTLHSFCLEIIRKHYFEAD 128

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           I  +F         +LIE  + S +       +E L+    E   I +++    L+    
Sbjct: 129 IDPNF---------RLIEPIESSMI------RDEVLEDLLEEAYGIKDNDSFFHLVDSFT 173

Query: 213 SNRTALKL-IFFFFSYLWRRKIIEKSLW 239
            +RT  +L I     Y + R   E  +W
Sbjct: 174 GDRTDTELHILISKLYDFSRANPEPDIW 201


>gi|300694290|ref|YP_003750263.1| ATP-dependent DNA helicase ii protein (uvrd) [Ralstonia
           solanacearum PSI07]
 gi|299076327|emb|CBJ35640.2| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum PSI07]
          Length = 710

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 22/134 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKTH L  RV  L+   A P  +L LT ++ AA+E+S R   ++    H S  
Sbjct: 45  VLAGAGSGKTHTLGWRVAHLVANGADPQRILLLTFSRRAASELSSRAGHLLARAMHGSTG 104

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             SA  T  Q                 T L   G     T H     +++++     +  
Sbjct: 105 ARSAAGTTYQ-----------------TALPWAG-----TFHGIGARLLREYAQRIGLAP 142

Query: 156 HFAIADEEQSKKLI 169
            F I D   S  L+
Sbjct: 143 DFTIHDRSDSADLL 156


>gi|293606508|ref|ZP_06688866.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter
          piechaudii ATCC 43553]
 gi|292815131|gb|EFF74254.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter
          piechaudii ATCC 43553]
          Length = 699

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT+ L  RV  L+L  A P  +L LT ++ AA EM  RV  ++
Sbjct: 42 VIAGAGSGKTNTLAHRVAHLILNGADPQRMLLLTFSRRAAQEMDRRVGSVL 92


>gi|90581055|ref|ZP_01236855.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
 gi|90437751|gb|EAS62942.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
          Length = 723

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++   S                                       G+ 
Sbjct: 65  KAAAEMRGRINELMHGSS--------------------------------------AGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  +++   L+A +   F I D +   +L+
Sbjct: 87  NGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL 123


>gi|330469984|ref|YP_004407727.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812955|gb|AEB47127.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 1114

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLL 66
           E ++ + L + T+ +  + + P     V A AGSGKT  +  RV+  L+AN++  P  +L
Sbjct: 27  ELAKLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVV-WLVANSYVRPEQVL 85

Query: 67  CLTHTKAAAAEMSHRV 82
            LT T+ AA E+ HRV
Sbjct: 86  GLTFTRKAAGELGHRV 101


>gi|323143043|ref|ZP_08077748.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
 gi|322417184|gb|EFY07813.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
          Length = 688

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 41/165 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           ID +++ + E +  S P  +  V A AG+GKT +LV R+  LL      P  +L +T T 
Sbjct: 6   IDPLNKEQKEAV--SAPLSNILVIAGAGTGKTRVLVSRIAWLLQVEMLLPREVLAVTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ E+I    H  D                                   GL 
Sbjct: 64  KAAREMRERI-ELIMG--HSVD-----------------------------------GLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             T H+F   I++ +  +A +   F + D +  KKLI+   K  L
Sbjct: 86  ANTFHSFSLRILRNYAKQAGLLPDFTVLDTDNQKKLIKRILKEEL 130


>gi|315609029|ref|ZP_07883999.1| ATP-dependent helicase [Prevotella buccae ATCC 33574]
 gi|315249233|gb|EFU29252.1| ATP-dependent helicase [Prevotella buccae ATCC 33574]
          Length = 1121

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 14/163 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    +RL++ N     T+L +T T  A  EM  R+L ++   W   +D+
Sbjct: 14  ASAGSGKTFTLATEYIRLVIDNPTAYRTILAVTFTNKATEEMKLRILSQLYGIWR--ADK 71

Query: 96  ILSAEITKIQ--GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                  K++   + P +    +A   L  ++      +V+TI  F +++++    E ++
Sbjct: 72  ASEGYYNKVKETSELPEREIRKRAGMALRNLIHNYNYFRVETIDTFFQSVLRNLARELDL 131

Query: 154 TSHFAIA------DEEQSKKLIE--EAKKSTLASIMLDNNEEL 188
           T++  I       +++   +LIE  +AK   L  IM   NE +
Sbjct: 132 TANLRIGLNDYQVEQQAVDRLIEDLDAKNPVLGWIMDYINENI 174


>gi|224438366|ref|ZP_03659293.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818]
 gi|313144808|ref|ZP_07807001.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818]
 gi|313129839|gb|EFR47456.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818]
          Length = 676

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S   +EQL A+  P+    + A+AG+GKT  +V R+  LL     P  +L LT T  A+
Sbjct: 3  LSNLNAEQLAAATAPSGHNLIIASAGTGKTSTIVGRIAYLLQQGFKPKDILLLTFTNKAS 62

Query: 76 AEMSHRVLEIITAWSHLSDEILSA 99
          +EM  RV +I    S L+ EI S 
Sbjct: 63 SEMIERVGKIF--GSSLAKEIESG 84


>gi|157413574|ref|YP_001484440.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9215]
 gi|157388149|gb|ABV50854.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9215]
          Length = 1208

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L   + + +L  
Sbjct: 15  IEASAGTGKSFTLSHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKIL---SRFHNLKL 71

Query: 95  EILSAEITKIQGKKP----NKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQ 146
            + S    KI         N  D  K++  +I+     +     LKV T HAFC  I+ +
Sbjct: 72  YLQSHNEIKIDNTLKEWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDE 131

Query: 147 FPLEANIT 154
           + +E  +T
Sbjct: 132 YSIEIGVT 139


>gi|124514841|gb|EAY56353.1| putative UvrD/REP helicase [Leptospirillum rubarum]
          Length = 649

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          S  ++++++ + E + A  P   A V A AGSGKT +L  RV  LL        +L LT 
Sbjct: 3  SRILNVLNEEQREAVTA--PDGPALVLAGAGSGKTRVLTHRVAWLLEKGVPAHRMLVLTF 60

Query: 71 TKAAAAEMSHRVLEIITA 88
          TK AA  + HR+ +++T 
Sbjct: 61 TKKAARVLQHRLADLLTG 78


>gi|94309177|ref|YP_582387.1| UvrD/REP helicase [Cupriavidus metallidurans CH34]
 gi|93353029|gb|ABF07118.1| putative ATP-dependent DNA helicase [Cupriavidus metallidurans
          CH34]
          Length = 702

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT+ L  RV  L++  A P  +L LT ++ AA+EM  RV  I+
Sbjct: 48 AGAGSGKTNTLAHRVAHLVVNGADPRRILLLTFSRRAASEMGRRVERIV 96


>gi|217077082|ref|YP_002334798.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B]
 gi|217036935|gb|ACJ75457.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B]
          Length = 632

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 39/161 (24%)

Query: 14  IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  ++   EQ  A   ++    V A  GSGKT ++  ++  L+ +   PS +L +T TK
Sbjct: 2   IDFKAELDDEQYEAVVNSKGKTLVIAGPGSGKTRVITYKIAHLISSGVKPSEILLVTFTK 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R                         K  ++S              T  G+ 
Sbjct: 62  AAAKEMLQR------------------------AKLVSRS--------------TLDGIT 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
             T H  C   ++++     +  +F I D E +K ++E A+
Sbjct: 84  AGTFHHICNLFLRKYGTIIGLKPNFTILDSEDAKDVMESAR 124


>gi|89074458|ref|ZP_01160935.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
 gi|89049746|gb|EAR55296.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
          Length = 723

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++   S                                       G+ 
Sbjct: 65  KAAAEMRGRINELMHGSS--------------------------------------AGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  +++   L+A +   F I D +   +L+
Sbjct: 87  NGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL 123


>gi|260061427|ref|YP_003194507.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501]
 gi|88785559|gb|EAR16728.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501]
          Length = 1039

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 10/143 (6%)

Query: 37  SANAGSGKTHILVQRVLRLLLA--NAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           SA+AGSGKT+ L +  L+LLL+     P   +L +T T  A  E+ +R+L+ + A++ + 
Sbjct: 12  SASAGSGKTYTLTREYLKLLLSGQGGQPFREILAITFTNKAVGELKNRILDSLEAFAGVR 71

Query: 94  DE----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           DE    +L  ++    G    ++   ++  +L  IL       V TI  F   I++ F  
Sbjct: 72  DEAGRPVLFRDLQDELGTD-RETLARRSGRVLQEILHNYAFFDVSTIDRFNHRILRTFAR 130

Query: 150 EANITSHFAIADEEQSKKLIEEA 172
           +  + ++F +  +  +  L+E+A
Sbjct: 131 DLQLPANFEVVLD--TDALLEQA 151


>gi|172040209|ref|YP_001799923.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851513|emb|CAQ04489.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 1022

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 49/158 (31%)

Query: 23  EQLLAS-DPTRSAWVS---------ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           EQLLA  +P +   V          A AGSGKT +L +R+  LL     P  +L +T T 
Sbjct: 162 EQLLAGLNPQQKEAVQHTGSPLLIVAGAGSGKTSVLTRRIAWLLSTGVAPWQILAITFTN 221

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV +++                      P    M                  
Sbjct: 222 KAAAEMRERVADLV---------------------GPAAERMW----------------- 243

Query: 133 VQTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLI 169
           V T H+ C  I++    L A + ++F I D + SK+LI
Sbjct: 244 VSTFHSMCVRILRSNAHLVAGLNTNFTIYDSDDSKRLI 281


>gi|146337792|ref|YP_001202840.1| putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278]
 gi|146190598|emb|CAL74600.1| Putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278]
          Length = 686

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          P     + A AGSGKT+ L  RV  LL+  A P  +L +T ++ AA+EMS RV  I
Sbjct: 29 PGPPLLIIAGAGSGKTNTLAHRVAHLLVNGADPRRILLMTFSRRAASEMSRRVERI 84


>gi|24214893|ref|NP_712374.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|24195918|gb|AAN49392.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
          Length = 672

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 38/127 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT  +V R+ +L+ +    S++L LT ++ AA EM                 
Sbjct: 31  VLAGAGTGKTKTIVSRLAQLVASGIPASSILLLTFSRKAAREM----------------- 73

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           IL A +  I  KK +               E  GG    T H+FC  ++++F    +I+S
Sbjct: 74  ILRASM--IGNKKCS---------------EVQGG----TFHSFCNGVLRKFAPVLDISS 112

Query: 156 HFAIADE 162
            F I DE
Sbjct: 113 GFTILDE 119


>gi|45657598|ref|YP_001684.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600837|gb|AAS70321.1| atp-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 672

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 38/127 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT  +V R+ +L+ +    S++L LT ++ AA EM                 
Sbjct: 31  VLAGAGTGKTKTIVSRLAQLVASGIPASSILLLTFSRKAAREM----------------- 73

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           IL A +  I  KK +               E  GG    T H+FC  ++++F    +I+S
Sbjct: 74  ILRASM--IGNKKCS---------------EVQGG----TFHSFCNGVLRKFAPVLDISS 112

Query: 156 HFAIADE 162
            F I DE
Sbjct: 113 GFTILDE 119


>gi|237811975|ref|YP_002896426.1| DNA helicase II [Burkholderia pseudomallei MSHR346]
 gi|237506796|gb|ACQ99114.1| DNA helicase II [Burkholderia pseudomallei MSHR346]
          Length = 787

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|300742291|ref|ZP_07072312.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567]
 gi|300381476|gb|EFJ78038.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567]
          Length = 844

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL    A P  +L +T T  AAAEM  R+  +I        
Sbjct: 22  IVAGAGSGKTRVLTHRIAHLLATGRATPGQILAITFTNKAAAEMRERIQALIG------- 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                +A+H+ I+           T H+FC  ++++      + 
Sbjct: 75  --------------------PRAQHMWIS-----------TFHSFCVRVLRREAKALGLK 103

Query: 155 SHFAIADEEQSKKLI 169
           S F I D   S++L+
Sbjct: 104 STFTIYDSADSQRLL 118


>gi|110637958|ref|YP_678165.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406]
 gi|110280639|gb|ABG58825.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406]
          Length = 749

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  L+     P  +L LT T  AA EM HR+
Sbjct: 26 AGAGSGKTRVLTYRIAHLIQKGVEPFNILSLTFTNKAAKEMQHRI 70


>gi|282877529|ref|ZP_06286347.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
 gi|281300353|gb|EFA92704.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
          Length = 1082

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 14/185 (7%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    ++ ++ N     ++L +T T  A  EM  R+L  +   +H L D 
Sbjct: 19  ASAGSGKTFTLATEYMKRVIENPDAYRSILAVTFTNKATEEMKMRILSQLYGIAHGLPDS 78

Query: 96  ILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
              + + KIQ   P        +A+  L  +L      +V+TI AF +++++    E ++
Sbjct: 79  --DSYLHKIQESIPFPCVKIRERAQKALGQLLHNYNYFRVETIDAFFQSVLRNLARELDL 136

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDIETL--IS 209
           T++  I  E + K++ E+A    +    L  N++L +  YE +   IS+D+    +  I 
Sbjct: 137 TANLRI--ELRDKQVKEKAVDELIEE--LQPNDKLLRWIYEYIRQNISDDKSWNVIGEIK 192

Query: 210 DIISN 214
           D  SN
Sbjct: 193 DFGSN 197


>gi|90413496|ref|ZP_01221487.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK]
 gi|90325428|gb|EAS41911.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK]
          Length = 1227

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 26/152 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL + +  T          +L +T T+AA AE+  R+   
Sbjct: 44  IEASAGTGKTFTIASLYLRLLLGHGNAETRHASELTVDQILVVTFTEAATAELRDRIRAR 103

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
               +I       +D ++   +T I       SD   A  +L+          + TIH F
Sbjct: 104 IHDAQIAFCRGFSNDPVIEPLLTAI-------SDHKAAAQILLNAERQMDEAAIYTIHGF 156

Query: 140 CEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169
           C+ ++ Q   E+     + F + DE Q K L+
Sbjct: 157 CQRMLTQNAFESGSRFNNEF-VTDESQLKSLV 187


>gi|313682829|ref|YP_004060567.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313155689|gb|ADR34367.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 1102

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 45/146 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLL------------------LANAHPSTLLCLTHTKAAAAE 77
           +SA AGSGKT+ L +R + +L                  L+ A P+ ++ +T+T+A A E
Sbjct: 12  ISAGAGSGKTYTLSRRYINILVGFNLFYEGESSRPMLEALSPARPNEIVTITYTEAGALE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ--- 134
           M  R+  +I              +  I+GK   K D   + H  +  L+ P    VQ   
Sbjct: 72  MKSRIFSLI-----------QNTLRYIEGKLDLKHDDYDSIHKALNPLDQPWIEHVQSML 120

Query: 135 -------------TIHAFCEAIMQQF 147
                        TIH++C  +++QF
Sbjct: 121 EHSLRYLSSATISTIHSYCLDLIEQF 146


>gi|332180434|gb|AEE16122.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 1299

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71
          T  + S+   EQ  A    R++ V+A AGSGKT +L  R   L+L    P+  +L LT T
Sbjct: 3  TAGIFSKLNEEQTAAVTAARNSVVAAGAGSGKTTVLAGRFAYLVLYRDIPAEKILTLTFT 62

Query: 72 KAAAAEMSHRV 82
          K AAAEM  R+
Sbjct: 63 KKAAAEMYARI 73


>gi|326202081|ref|ZP_08191951.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium
           papyrosolvens DSM 2782]
 gi|325987876|gb|EGD48702.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium
           papyrosolvens DSM 2782]
          Length = 1247

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 48/206 (23%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LV+R++R +     P    +LL +T T AAA EM  R+       + +SD I    
Sbjct: 31  KTAVLVERIIRKITDAETPVDIDSLLVVTFTNAAATEMRERI------GAAISDSI---- 80

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
                  + N+   + +R L++          + TIH+FC        LE  I S+F   
Sbjct: 81  -------EKNQGSNNISRQLVLL-----NKASITTIHSFC--------LEV-IRSNFQSI 119

Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIISNRT--- 216
           + + + K+++E + + L S      E L + F EI E +  +ED   L+    SNR    
Sbjct: 120 EIDPTFKILDETEATLLKS------ETLSELFEEIYEDVEGNEDFFDLLESYGSNRDDEK 173

Query: 217 ----ALKLIFFFFSYLWRRKIIEKSL 238
                L +  F  SY W  K +E+ +
Sbjct: 174 IQEMVLNIYSFVQSYPWPEKWLEQQV 199


>gi|83720350|ref|YP_443147.1| DNA helicase II [Burkholderia thailandensis E264]
 gi|167582159|ref|ZP_02375033.1| DNA helicase II [Burkholderia thailandensis TXDOH]
 gi|167620316|ref|ZP_02388947.1| DNA helicase II [Burkholderia thailandensis Bt4]
 gi|257139377|ref|ZP_05587639.1| DNA helicase II [Burkholderia thailandensis E264]
 gi|83654175|gb|ABC38238.1| DNA helicase II [Burkholderia thailandensis E264]
          Length = 787

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|206602356|gb|EDZ38837.1| Putative UvrD/REP helicase [Leptospirillum sp. Group II '5-way
          CG']
          Length = 649

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          S  ++++++ + E + A  P   A V A AGSGKT +L  RV  LL        +L LT 
Sbjct: 3  SRILNVLNEEQREAVTA--PDGPALVLAGAGSGKTRVLTHRVAWLLEKGVPAHRMLVLTF 60

Query: 71 TKAAAAEMSHRVLEIITA 88
          TK AA  + HR+ +++T 
Sbjct: 61 TKKAARVLQHRLADLLTG 78


>gi|254374748|ref|ZP_04990229.1| hypothetical protein FTDG_00923 [Francisella novicida GA99-3548]
 gi|151572467|gb|EDN38121.1| hypothetical protein FTDG_00923 [Francisella novicida GA99-3548]
          Length = 1216

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           DE               +SD    +HL  ++LE      + TIH FC+ I+ +
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKILSE 115


>gi|34495660|ref|NP_899875.1| DNA helicase II [Chromobacterium violaceum ATCC 12472]
 gi|34101515|gb|AAQ57884.1| DNA helicase II [Chromobacterium violaceum ATCC 12472]
          Length = 713

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          DL++    EQL A   P +SA V A AGSGKT +L  R+  LL      P+ +L +T T 
Sbjct: 3  DLLAGLNPEQLRAVTWPAKSALVLAGAGSGKTRVLTTRIAWLLSTGQTSPAGVLAVTFTN 62

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  ++
Sbjct: 63 KAAREMQTRLSALV 76


>gi|302818017|ref|XP_002990683.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii]
 gi|300141605|gb|EFJ08315.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii]
          Length = 1291

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 37/144 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A  GSGKT  +V R+L LL        +L +T T AAA EM  RV  ++         
Sbjct: 271 IVAGPGSGKTSTMVARILTLLNEGVDSKNILGMTFTTAAATEMMDRVAAVV--------- 321

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                     GK+ +K                   L + T H+FC  + +    + N TS
Sbjct: 322 ----------GKEASKE------------------LMISTFHSFCLQLCRSHAEKLNRTS 353

Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179
            F +    Q +K + EA +  L +
Sbjct: 354 EFLVYGASQQRKAVIEATRLALEA 377


>gi|229552293|ref|ZP_04441018.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539702|ref|YP_003174201.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229314365|gb|EEN80338.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151378|emb|CAR90350.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus Lc 705]
          Length = 1236

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 17/153 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
           T S+Q   S       VSA+AGSGKT +LV+R++ ++L  +A  + +L +T T+AA +EM
Sbjct: 5   TPSQQAAISHHGHDMLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATSEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++   +        + L+A        K ++ +    RHL   I       K+ T+ A
Sbjct: 65  RTKIQTALK-------QTLTA--------KRHELNAEDRRHLANQIAMVNAA-KISTLDA 108

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           F   I+Q +    ++   F +  +E  + +++E
Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141


>gi|323139776|ref|ZP_08074812.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322394980|gb|EFX97545.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 687

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          P     V A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEM+ RV  I
Sbjct: 26 PGGPLLVIAGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMTRRVERI 81


>gi|46445643|ref|YP_007008.1| putative exodeoxyribonuclease V beta chain [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399284|emb|CAF22733.1| putative exodeoxyribonuclease V beta chain [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 1166

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 13/140 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-----AHP-STLLCLTHTKAAAAEMSHRV------- 82
           + A+AG+GKT  +   V+RLL+ N     A P S +L +T TKAA  ++  R+       
Sbjct: 14  LEASAGTGKTFSIQNIVVRLLIENQLEQEALPLSKILVVTFTKAATRDLKLRIRLNIEYA 73

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           LE+   W   S+ + +         +     + KA+  L   L      ++ TIHAFC  
Sbjct: 74  LEVFNEWLSHSNVLENTPDYLKAVIEAGIESVLKAKKKLQQALFEFDQAQIFTIHAFCAR 133

Query: 143 IMQQFPLEANITSHFAIADE 162
           +++Q+ +E++I  H +  +E
Sbjct: 134 MLRQYAIESDIGFHASYGEE 153


>gi|156564011|ref|YP_001429750.1| PcrA helicase [Bacillus phage 0305phi8-36]
 gi|154622708|gb|ABS83588.1| PcrA helicase [Bacillus phage 0305phi8-36]
          Length = 657

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 37/141 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L +RV  +L     P  +L +T T  AA EM  R+           +E
Sbjct: 40  VIAGAGSGKTRVLQKRVGYILENGIDPRRILTVTFTNKAATEMKERI----------GNE 89

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +  A   KI                            + T H+     + Q+  EA +  
Sbjct: 90  VGEARAKKIM---------------------------IGTFHSLAVRWLHQYYSEAGLKK 122

Query: 156 HFAIADEEQSKKLIEEAKKST 176
           ++ I D E + K+I+E  KS 
Sbjct: 123 NWTIFDSEDTNKVIKELLKSN 143


>gi|323499636|ref|ZP_08104604.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326]
 gi|323315237|gb|EGA68280.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326]
          Length = 723

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                                      ++ +  G+ 
Sbjct: 65  KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  I++   L+A +   F I D +   +L+
Sbjct: 87  NGTFHGICHRILRAHYLDAKLPEDFQIIDTDDQVRLL 123


>gi|297625889|ref|YP_003687652.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921654|emb|CBL56211.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 829

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L +R+  L+     HP ++L +T T  AAAEM  RV E++
Sbjct: 65  VVAGAGSGKTRVLTRRIAWLIAQRGVHPGSILAITFTNKAAAEMRSRVAELV 116


>gi|116689464|ref|YP_835087.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424]
 gi|116647553|gb|ABK08194.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia HI2424]
          Length = 787

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|170732770|ref|YP_001764717.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
 gi|169816012|gb|ACA90595.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
          Length = 787

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|317403517|gb|EFV84017.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 696

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT+ L  RV  L+L  A P  +L LT ++ AA EM  RV  ++
Sbjct: 42 VIAGAGSGKTNTLAHRVAHLILNGADPQRMLLLTFSRRAAQEMERRVGSVL 92


>gi|189485139|ref|YP_001956080.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287098|dbj|BAG13619.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 1024

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 13/130 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS-- 90
           V A+AG+GKT+ L +R L LLL+   N     ++ +T T  AA EM +RV++ +   +  
Sbjct: 9   VLASAGTGKTYNLAKRYLYLLLSSNDNTSIKNIIAVTFTNKAAVEMKYRVIDYLKKAALS 68

Query: 91  -HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
               D     E+TK +  +       ++  +L  I +      + TI +F   I++   +
Sbjct: 69  LDTGDFFDELELTKDKIAQ-------RSAAVLKDIFKFYDNFNISTIDSFKNRILKSCAM 121

Query: 150 EANITSHFAI 159
             +I+ +F I
Sbjct: 122 SIDISPNFVI 131


>gi|305681998|ref|ZP_07404802.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658471|gb|EFM47974.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 898

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 41/158 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DLI+    +Q  A + + S   + A AGSGKT +L +R+  LL +    P  +L +T T 
Sbjct: 94  DLIADLNPQQRAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTN 153

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++                      P  + M                  
Sbjct: 154 KAAAEMRDRVIDLV---------------------GPTATRMW----------------- 175

Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLI 169
           V T H+ C  I+ +Q  L   + ++F I D + SK+L+
Sbjct: 176 VATFHSACVRILREQAHLLPGLNTNFTIYDADDSKRLL 213


>gi|167894600|ref|ZP_02482002.1| DNA helicase II [Burkholderia pseudomallei 7894]
 gi|167919264|ref|ZP_02506355.1| DNA helicase II [Burkholderia pseudomallei BCC215]
          Length = 787

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|78066057|ref|YP_368826.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383]
 gi|77966802|gb|ABB08182.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383]
          Length = 787

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIKQGYASPPTVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|254297873|ref|ZP_04965326.1| DNA helicase II [Burkholderia pseudomallei 406e]
 gi|157806965|gb|EDO84135.1| DNA helicase II [Burkholderia pseudomallei 406e]
          Length = 787

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|295087178|emb|CBK68701.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens
            XB1A]
          Length = 1624

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 16   LISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
            L  Q    QL  ++   +R   V+A  GSGKT +LV ++  LLL  +     LL LT ++
Sbjct: 1069 LFGQLSKRQLDIISDKVSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSR 1128

Query: 73   AAAAEMSHRVLEIITAWSHL 92
            AAA E   R++E+I   +H 
Sbjct: 1129 AAATEFKQRLMELIGNAAHF 1148


>gi|227819648|ref|YP_002823619.1| DNA helicase [Sinorhizobium fredii NGR234]
 gi|227338647|gb|ACP22866.1| UvrD2 DNA helicase [Sinorhizobium fredii NGR234]
          Length = 688

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEM  RV  I +
Sbjct: 35 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMGRRVERICS 84


>gi|325955681|ref|YP_004239341.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
 gi|323438299|gb|ADX68763.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
          Length = 772

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + + Q    Q LA + T     + A AGSGKT +L  R+  L+     P  +L LT T  
Sbjct: 3  NYLEQLNEPQRLAVEATEGPVMIIAGAGSGKTRVLTYRIAHLMNKGVDPFNILSLTFTNK 62

Query: 74 AAAEMSHRVLEIITA 88
          AA EM  R+  ++ A
Sbjct: 63 AAREMKERISSVVGA 77


>gi|282860904|ref|ZP_06269970.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE]
 gi|282564640|gb|EFB70176.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE]
          Length = 815

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++        
Sbjct: 90  IVAGAGSGKTRVLTHRIAHLLAERGVHPGQILAITFTNKAAGEMKERVGDLV-------- 141

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G + N                    + V T H+ C  I+++       T
Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKLLGFT 171

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 172 SSFSIYDAADSKRLM 186


>gi|217967779|ref|YP_002353285.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
 gi|217336878|gb|ACK42671.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
          Length = 625

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 41/161 (25%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           +D +++   EQL A  +  R   + A AGSGKT ++  ++  L+  N A P  ++ LT T
Sbjct: 1   MDFLNELNKEQLEAVFEIERPVLILAGAGSGKTRVITYKIAYLIKNNFAKPENIVALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGG 130
             AA EM  R+           D +L  + + K+                          
Sbjct: 61  NKAAEEMKRRI-----------DNLLGVKNVDKVWA------------------------ 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
               T H F   +++ F    N+  +F I DE   + LI++
Sbjct: 86  ---GTFHGFGLYLLKNFGRYWNLCPNFVIYDENDQEDLIKD 123


>gi|157377373|ref|YP_001475973.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
 gi|157319747|gb|ABV38845.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
          Length = 907

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           ++EQ+ A +   R   V A AGSGKT  +V+RV  LL    HPS +  L +T  AA+E+S
Sbjct: 454 QAEQMKAVEAEARVLAVIAGAGSGKTRTIVERVKYLLGEGRHPSRIKVLAYTNDAASEIS 513

Query: 80  HRV 82
            R+
Sbjct: 514 RRI 516


>gi|76811011|ref|YP_333248.1| DNA helicase II [Burkholderia pseudomallei 1710b]
 gi|126453724|ref|YP_001065963.1| DNA helicase II [Burkholderia pseudomallei 1106a]
 gi|134282378|ref|ZP_01769083.1| DNA helicase II [Burkholderia pseudomallei 305]
 gi|167846029|ref|ZP_02471537.1| DNA helicase II [Burkholderia pseudomallei B7210]
 gi|167903003|ref|ZP_02490208.1| DNA helicase II [Burkholderia pseudomallei NCTC 13177]
 gi|167911242|ref|ZP_02498333.1| DNA helicase II [Burkholderia pseudomallei 112]
 gi|217423664|ref|ZP_03455165.1| DNA helicase II [Burkholderia pseudomallei 576]
 gi|226192893|ref|ZP_03788505.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9]
 gi|242316612|ref|ZP_04815628.1| DNA helicase II [Burkholderia pseudomallei 1106b]
 gi|254180038|ref|ZP_04886637.1| DNA helicase II [Burkholderia pseudomallei 1655]
 gi|254188552|ref|ZP_04895063.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237]
 gi|254261076|ref|ZP_04952130.1| DNA helicase II [Burkholderia pseudomallei 1710a]
 gi|76580464|gb|ABA49939.1| DNA helicase II [Burkholderia pseudomallei 1710b]
 gi|126227366|gb|ABN90906.1| DNA helicase II [Burkholderia pseudomallei 1106a]
 gi|134246416|gb|EBA46505.1| DNA helicase II [Burkholderia pseudomallei 305]
 gi|157936231|gb|EDO91901.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237]
 gi|184210578|gb|EDU07621.1| DNA helicase II [Burkholderia pseudomallei 1655]
 gi|217393522|gb|EEC33543.1| DNA helicase II [Burkholderia pseudomallei 576]
 gi|225934983|gb|EEH30958.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9]
 gi|242139851|gb|EES26253.1| DNA helicase II [Burkholderia pseudomallei 1106b]
 gi|254219765|gb|EET09149.1| DNA helicase II [Burkholderia pseudomallei 1710a]
          Length = 787

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|330836710|ref|YP_004411351.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329748613|gb|AEC01969.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 668

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          + DL  +   EQ LA+        + A AGSGKT +L  RV  +L     P ++L LT T
Sbjct: 2  SFDLRRELNPEQYLAASTIDGPLLIIAGAGSGKTRMLTFRVAHMLENGISPHSILALTFT 61

Query: 72 KAAAAEMSHRV 82
            AAAEM+ R+
Sbjct: 62 NKAAAEMAERI 72


>gi|314969858|gb|EFT13956.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA1]
          Length = 810

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|227487771|ref|ZP_03918087.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542414|ref|ZP_03972463.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227092273|gb|EEI27585.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181612|gb|EEI62584.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 735

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 50/200 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL      P  +L +T T  AA EM  RV+ +I        
Sbjct: 27  IVAGAGSGKTAVLTRRIAHLLRFKGVQPWQILAITFTNKAAKEMQERVIGLI-------- 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEANI 153
                         P   +M+                 V T H+ C  I+++   L   +
Sbjct: 79  -------------GPEAQNMA-----------------VATFHSTCVRILRRNAQLVPGL 108

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--EISNDEDIETLISDI 211
            S+F I D + SK+L+++  K        D + ++KK    +L  +IS  ++    + D 
Sbjct: 109 NSNFTIYDSDDSKRLLQQIAK--------DMDLDIKKFSPRVLGNKISGWKNELIGVDDA 160

Query: 212 ISNRTALKLIFFFFSYLWRR 231
           +     +  ++ F+    RR
Sbjct: 161 VKEHKVIGQVYGFYQERLRR 180


>gi|311746368|ref|ZP_07720153.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1]
 gi|126575253|gb|EAZ79585.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1]
          Length = 1069

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94
           ++AGSGKT+ L    L+L L + H    +L +T T  A  EM  R++E +    ++   D
Sbjct: 11  SSAGSGKTYTLTLEYLKLALQSPHAFKQILAVTFTNKATQEMKERIVEELKRLRFNVKPD 70

Query: 95  EILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           E +  E+  +   + ++S +   A+  L  IL   G   V TI +F + +++ F  E ++
Sbjct: 71  EKMDREL--MNSLEVDESGLKVLAQQTLTAILHDYGRFSVSTIDSFFQKVVRAFAREIDL 128

Query: 154 TSHFAI 159
            + F +
Sbjct: 129 NAKFDV 134


>gi|315077282|gb|EFT49344.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA2]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|314979801|gb|EFT23895.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA2]
 gi|315090029|gb|EFT62005.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA1]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|314963433|gb|EFT07533.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA1]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|327332323|gb|EGE74059.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL097PA1]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|262276890|ref|ZP_06054683.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114]
 gi|262223993|gb|EEY74452.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114]
          Length = 742

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
          L S    ++L  S+      V A AGSGKT +L  R+  L+         +LC+T T  A
Sbjct: 5  LNSLNNQQKLAVSNTEGPLQVLAGAGSGKTKVLTSRIAYLIQQKKCFGQQILCVTFTNKA 64

Query: 75 AAEMSHRVLEIITAWS 90
          A+EM  RVL+++ + S
Sbjct: 65 ASEMRERVLKLVNSKS 80


>gi|33319803|gb|AAQ05776.1|AF478168_1 exodeoxyribonuclease V [Borrelia hermsii]
 gi|37727294|gb|AAO39714.1| exodeoxynuclease V beta chain [Borrelia hermsii]
          Length = 1146

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 25/128 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93
           + A+AG+GKT+ L   +  LL+   + PS +L LT TK A  EM  R+L+ I  A+    
Sbjct: 16  IEASAGTGKTYTLENTITNLLINKMYSPSEILVLTFTKKATEEMHIRILKSIENAY---- 71

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                      Q  K +KS        L TI E    + + TI+ F    +  F +E   
Sbjct: 72  -----------QNSKTDKS--------LKTIYEQSNKIFISTINKFALYALNNFQIETEN 112

Query: 154 TSHFAIAD 161
            S +++ +
Sbjct: 113 FSKYSVKE 120


>gi|307128610|ref|YP_003880640.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI]
 gi|306483072|gb|ADM89942.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI]
          Length = 701

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          R   V A AGSGKT +L+ R++ L+ +      +L LT TK +A E+ +R+  +I
Sbjct: 18 RPTMVIAGAGSGKTRVLIYRLIHLIKSGVKSRNILALTFTKKSANEIKYRLSSLI 72


>gi|289167933|ref|YP_003446202.1| hypothetical protein smi_1090 [Streptococcus mitis B6]
 gi|288907500|emb|CBJ22337.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 1297

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 41/111 (36%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A  G+GKT IL +RV  +L  N H  P  ++CLT+T+A A+EM  R+ ++I       
Sbjct: 2   VIAGPGTGKTQILSRRVANIL-TNYHTSPEEIVCLTYTEAGASEMLDRLEKLIGE----- 55

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                      +G+K                      ++V TIHAFC  ++
Sbjct: 56  -----------EGRK----------------------VRVSTIHAFCSELI 73


>gi|150391860|ref|YP_001321909.1| recombination helicase AddA [Alkaliphilus metalliredigens QYMF]
 gi|251764495|sp|A6TVN2|ADDA_ALKMQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|149951722|gb|ABR50250.1| Recombination helicase AddA [Alkaliphilus metalliredigens QYMF]
          Length = 1197

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 23/142 (16%)

Query: 22  SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMS 79
           +EQ  A D   S   +SA AGSGKT +LV+R+++++L +      LL +T T AAA EM 
Sbjct: 6   TEQQAAIDARGSNLLISAAAGSGKTAVLVERIIQIILKDKIDIDRLLIVTFTNAAAGEMR 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R              I  A + +++ K   ++ + +  +LL           + TIH+F
Sbjct: 66  ER--------------IAGAIMEEMERKTEQEAHLRRQINLL-------NRASITTIHSF 104

Query: 140 CEAIMQQFPLEANITSHFAIAD 161
           C  ++++     ++   F I D
Sbjct: 105 CIDVVRRHFHIIDVDPGFRIGD 126


>gi|258651495|ref|YP_003200651.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM
           44233]
 gi|258554720|gb|ACV77662.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM
           44233]
          Length = 864

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 20/114 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT +L +R+  LL +  A P  +L +T T  AA EM  RV ++         
Sbjct: 56  VVAGAGSGKTRVLTRRIAYLLAVGGAQPGEILAITFTNKAAREMKDRVTDLVGGRGRSMW 115

Query: 86  ITAWSHLSDEILSAEITKIQGKKP----NKSDMSKARHLLITILETPGGLKVQT 135
           ++ +  +   IL AE T+I  K      +++D  +   L+       GGL + T
Sbjct: 116 VSTFHSMCVRILRAEATQIGLKTTFTIYDQADSQRLAQLV------AGGLNIDT 163


>gi|289424917|ref|ZP_06426696.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187]
 gi|289427700|ref|ZP_06429412.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165]
 gi|295131282|ref|YP_003581945.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137]
 gi|289154616|gb|EFD03302.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187]
 gi|289159191|gb|EFD07383.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165]
 gi|291375534|gb|ADD99388.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137]
 gi|313763127|gb|EFS34491.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA1]
 gi|313773164|gb|EFS39130.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL074PA1]
 gi|313793367|gb|EFS41425.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA1]
 gi|313800989|gb|EFS42257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA2]
 gi|313808729|gb|EFS47183.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA2]
 gi|313810354|gb|EFS48068.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA1]
 gi|313816467|gb|EFS54181.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA1]
 gi|313819821|gb|EFS57535.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA1]
 gi|313823311|gb|EFS61025.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA2]
 gi|313824786|gb|EFS62500.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA1]
 gi|313828273|gb|EFS65987.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA2]
 gi|313830207|gb|EFS67921.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL007PA1]
 gi|313832960|gb|EFS70674.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL056PA1]
 gi|313838057|gb|EFS75771.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL086PA1]
 gi|314917767|gb|EFS81598.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA1]
 gi|314919507|gb|EFS83338.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA3]
 gi|314925815|gb|EFS89646.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA3]
 gi|314930099|gb|EFS93930.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL067PA1]
 gi|314957100|gb|EFT01205.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA1]
 gi|314957690|gb|EFT01793.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA1]
 gi|314960758|gb|EFT04859.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA2]
 gi|314972985|gb|EFT17081.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA1]
 gi|314975621|gb|EFT19716.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL045PA1]
 gi|314984812|gb|EFT28904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA1]
 gi|314986165|gb|EFT30257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA2]
 gi|314988777|gb|EFT32868.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA3]
 gi|315079961|gb|EFT51937.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL078PA1]
 gi|315083289|gb|EFT55265.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA2]
 gi|315086938|gb|EFT58914.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA3]
 gi|315096648|gb|EFT68624.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL038PA1]
 gi|315097877|gb|EFT69853.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA2]
 gi|315100641|gb|EFT72617.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA1]
 gi|315109268|gb|EFT81244.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA2]
 gi|327325064|gb|EGE66870.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA3]
 gi|327325309|gb|EGE67114.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA2]
 gi|327443823|gb|EGE90477.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA1]
 gi|327449135|gb|EGE95789.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA2]
 gi|327449263|gb|EGE95917.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA2]
 gi|327451317|gb|EGE97971.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA3]
 gi|327451706|gb|EGE98360.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL092PA1]
 gi|328752262|gb|EGF65878.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA1]
 gi|328755353|gb|EGF68969.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA2]
 gi|328756392|gb|EGF70008.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL020PA1]
 gi|328761099|gb|EGF74648.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL099PA1]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|89256059|ref|YP_513421.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009877|ref|ZP_02274808.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89143890|emb|CAJ79108.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica LVS]
          Length = 1217

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           DE               +SD    +HL  ++LE      + TIH FC+ ++ +
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115


>gi|33440279|ref|ZP_00141864.1| COG0210: Superfamily I DNA and RNA helicases [Pasteuria nishizawae
           str. North American]
          Length = 160

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 11/84 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA-----W 89
           V A AGSGKT +L  RV  ++ +  A P ++LC+T T  AA EM HR+  +++      W
Sbjct: 35  VMAGAGSGKTRVLTYRVGHIVASQLAKPWSVLCITFTNKAATEMRHRIHALLSGQTTGVW 94

Query: 90  SH----LSDEILSAEITKIQGKKP 109
            H    L   IL  +I  + G  P
Sbjct: 95  VHTFHGLCARILRTDIQHL-GYDP 117


>gi|56708443|ref|YP_170339.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670914|ref|YP_667471.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254371067|ref|ZP_04987069.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|56604935|emb|CAG46027.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321247|emb|CAL09410.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569307|gb|EDN34961.1| hypothetical protein FTBG_00823 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|282159635|gb|ADA79026.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 1217

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 16/120 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           DE               +SD    +HL  ++LE      + TIH FC+ ++ +    + I
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSEQAFASGI 122


>gi|126441559|ref|YP_001058711.1| DNA helicase II [Burkholderia pseudomallei 668]
 gi|126221052|gb|ABN84558.1| DNA helicase II [Burkholderia pseudomallei 668]
          Length = 787

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|53725443|ref|YP_102655.1| DNA helicase II [Burkholderia mallei ATCC 23344]
 gi|67642678|ref|ZP_00441431.1| DNA helicase II [Burkholderia mallei GB8 horse 4]
 gi|121601559|ref|YP_992792.1| DNA helicase II [Burkholderia mallei SAVP1]
 gi|124385882|ref|YP_001026420.1| DNA helicase II [Burkholderia mallei NCTC 10229]
 gi|126449241|ref|YP_001080308.1| DNA helicase II [Burkholderia mallei NCTC 10247]
 gi|167001551|ref|ZP_02267346.1| DNA helicase II [Burkholderia mallei PRL-20]
 gi|254178093|ref|ZP_04884748.1| DNA helicase II [Burkholderia mallei ATCC 10399]
 gi|254199592|ref|ZP_04905958.1| DNA helicase II [Burkholderia mallei FMH]
 gi|254205910|ref|ZP_04912262.1| DNA helicase II [Burkholderia mallei JHU]
 gi|254358690|ref|ZP_04974963.1| DNA helicase II [Burkholderia mallei 2002721280]
 gi|52428866|gb|AAU49459.1| DNA helicase II [Burkholderia mallei ATCC 23344]
 gi|121230369|gb|ABM52887.1| DNA helicase II [Burkholderia mallei SAVP1]
 gi|124293902|gb|ABN03171.1| DNA helicase II [Burkholderia mallei NCTC 10229]
 gi|126242111|gb|ABO05204.1| DNA helicase II [Burkholderia mallei NCTC 10247]
 gi|147749188|gb|EDK56262.1| DNA helicase II [Burkholderia mallei FMH]
 gi|147753353|gb|EDK60418.1| DNA helicase II [Burkholderia mallei JHU]
 gi|148027817|gb|EDK85838.1| DNA helicase II [Burkholderia mallei 2002721280]
 gi|160699132|gb|EDP89102.1| DNA helicase II [Burkholderia mallei ATCC 10399]
 gi|238523865|gb|EEP87301.1| DNA helicase II [Burkholderia mallei GB8 horse 4]
 gi|243062656|gb|EES44842.1| DNA helicase II [Burkholderia mallei PRL-20]
          Length = 787

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|327451777|gb|EGE98431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA2]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|313817909|gb|EFS55623.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA2]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium
           sticklandii DSM 519]
 gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium
           sticklandii]
          Length = 828

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 39/159 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +  I +   EQ  A D       V A AG+GKT ++  R     ++   P  +L LT T 
Sbjct: 4   VKYIERLNKEQKTAYDKVFGPLIVMAPAGTGKTDVIALRAYNAYISGVKPEDMLLLTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA  M  R LEI+                   G   NK                   ++
Sbjct: 64  RAAKSMKKR-LEIVI------------------GDIANK-------------------IR 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           + T H  C  I++Q  +   ++  F + DE+ S+++I +
Sbjct: 86  ISTFHGLCGFILRQEAVNLFLSPDFIVIDEDDSRQIIRD 124


>gi|303247358|ref|ZP_07333631.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302491272|gb|EFL51161.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 725

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 39/188 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  +V R+  L+     P+ +L LT T+ AA EM  R   ++         
Sbjct: 24  VIAGAGSGKTRTIVYRLAHLVSDGVDPAAILLLTFTRKAAQEMLTRAGMLLA-------- 75

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +  + +  + G                            T HAF  A ++++   A    
Sbjct: 76  MGPSGVASVSGG---------------------------TFHAFAFATLRRYHAAAGFPD 108

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
            F + D+  S+ ++ +A K TL     D +   K A   +L  + +++++  + D++S R
Sbjct: 109 GFTVLDQADSEDILGQA-KDTLGIGKGDRSFPRKSAVLGLLSKARNKELD--VGDVLS-R 164

Query: 216 TALKLIFF 223
            A  L+ +
Sbjct: 165 EAFHLLPY 172


>gi|254368883|ref|ZP_04984896.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121804|gb|EDO65974.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 1217

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           DE               +SD    +HL  ++LE      + TIH FC+ ++ +
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115


>gi|115314538|ref|YP_763261.1| exodeoxyribonuclease V [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502071|ref|YP_001428136.1| exodeoxyribonuclease V, subunit beta [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954227|ref|ZP_06558848.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312347|ref|ZP_06803132.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|115129437|gb|ABI82624.1| exodeoxyribonuclease V [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156252674|gb|ABU61180.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 1217

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           DE               +SD    +HL  ++LE      + TIH FC+ ++ +
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115


>gi|323701383|ref|ZP_08113057.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574]
 gi|323533642|gb|EGB23507.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574]
          Length = 1243

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 26/144 (18%)

Query: 23  EQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEM 78
           EQL A +   R+  V+A AG+GKT +LV+R++R++    +P     LL +T T AAAAEM
Sbjct: 9   EQLAAIETRGRNLLVAAAAGAGKTAVLVERIIRMITDPVNPVEIDKLLVVTFTNAAAAEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                  ++K     P    +S+   LL           + T+H+
Sbjct: 69  RERI---------------GLALSKALNANPRSGHLSRQLALL-------NRASITTLHS 106

Query: 139 FCEAIMQQFPLEANITSHFAIADE 162
           FC  +++++  + ++   F +ADE
Sbjct: 107 FCLDLLRRYFYQLDLDPSFRVADE 130


>gi|167570197|ref|ZP_02363071.1| DNA helicase II [Burkholderia oklahomensis C6786]
          Length = 786

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|167563007|ref|ZP_02355923.1| DNA helicase II [Burkholderia oklahomensis EO147]
          Length = 786

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|159186244|ref|NP_356043.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159141378|gb|AAK88828.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 688

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AGSGKT+ L  RV  L++  A P  +L +T ++ AA+EMS RV  I
Sbjct: 36 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAASEMSRRVERI 83


>gi|325273939|ref|ZP_08140102.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51]
 gi|324100910|gb|EGB98593.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51]
          Length = 728

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  R+ +++        
Sbjct: 30  VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P G+ V T H     +++    EA + 
Sbjct: 84  --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +F I D +  ++LI+   +
Sbjct: 112 QNFQILDSDDQQRLIKRVMR 131


>gi|314914443|gb|EFS78274.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA4]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|163815442|ref|ZP_02206815.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759]
 gi|158449079|gb|EDP26074.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759]
          Length = 1303

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 30/181 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-----ANAHPST------- 64
           IS TK +  +      +  V+A AGSGKT +LV+R++ ++L      N  P         
Sbjct: 6   ISWTKQQAHVIDTRIGNLLVAAAAGSGKTAVLVERIIEMVLGVDSNGNKLPDQDRVNVDE 65

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T AAAA+M  +   I  A     DE ++  I                   LI  
Sbjct: 66  LLVVTFTNAAAAQMKEK---ISAALQKKIDEYMANGIYDEH---------------LIKQ 107

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +      ++ TI +FC  I++++  +  + S F IAD+ + + + ++     + S   D 
Sbjct: 108 MTLINHAEICTIDSFCLHIVKEYFAKVQLDSAFDIADKTEMEIIKKDVMDKVMESCYQDE 167

Query: 185 N 185
           N
Sbjct: 168 N 168


>gi|187918490|ref|YP_001884053.1| exodeoxyribonuclease V beta chain [Borrelia hermsii DAH]
 gi|119861338|gb|AAX17133.1| exodeoxyribonuclease V beta chain [Borrelia hermsii DAH]
          Length = 1157

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 36/169 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93
           + A+AG+GKT+ L   +  LL+   + PS +L LT TK A  EM  R+L+ I  A+    
Sbjct: 27  IEASAGTGKTYTLENTITNLLINKMYSPSEILVLTFTKKATEEMHIRILKSIENAY---- 82

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                      Q  K +KS        L TI E    + + TI+ F    +  F +E   
Sbjct: 83  -----------QNSKTDKS--------LKTIYEQSNKIFISTINKFALYALNNFQIETEN 123

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
            S +++ +   S+  I+E     +    L  ++ LKK F    EI +DE
Sbjct: 124 FSKYSVKENFTSE--IDE-----IVYEFLRKSDSLKKEF----EIKDDE 161


>gi|53719591|ref|YP_108577.1| putative helicase [Burkholderia pseudomallei K96243]
 gi|52210005|emb|CAH35978.1| putative helicase [Burkholderia pseudomallei K96243]
          Length = 787

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|313812190|gb|EFS49904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA1]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 43  VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  RV++++
Sbjct: 100 KAAAEMKARVVDLV 113


>gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 894

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 41/158 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DLI+    +Q  A + + S   + A AGSGKT +L +R+  LL +    P  +L +T T 
Sbjct: 94  DLIADLNPQQRAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTN 153

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++                      P  + M                  
Sbjct: 154 KAAAEMRDRVIDLV---------------------GPTATRMW----------------- 175

Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLI 169
           V T H+ C  I+ +Q  L   + ++F I D + SK+L+
Sbjct: 176 VATFHSACVRILREQAHLLPGLNTNFTIYDADDSKRLL 213


>gi|170759836|ref|YP_001785776.1| recombination helicase AddA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|251764515|sp|B1KUZ8|ADDA_CLOBM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|169406825|gb|ACA55236.1| ATP-dependent nuclease subunit A [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 1279

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 28  SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           +D  R A  + N          +GKT +LVQR++  +L    P     LL +T T AAAA
Sbjct: 7   TDEQRQAVFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ + I+                   K  +++  SKA    +T+L       + TI
Sbjct: 67  EMRERIGDAIS-------------------KGLDENPESKALRKQLTLLNKSN---IMTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           H+FC  I++       I  +F I DE +   + +EA
Sbjct: 105 HSFCLQIIKNNFHTIEIDPNFRICDETEGILMKQEA 140


>gi|321310205|ref|YP_004192534.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
          Langford 1]
 gi|319802049|emb|CBY92695.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
          Langford 1]
          Length = 693

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
          DL +  + ++L    P +   V A AG+GKT +L +R   L+   N  P  +L +T TK 
Sbjct: 10 DLSNLNEQQRLAVLSPLKPILVVAGAGTGKTTVLTKRFEYLVRDCNIDPRNILVITFTKK 69

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 70 AATEMKRRI 78


>gi|300932549|ref|ZP_07147805.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 864

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT +L +R+  LL     P  +L +T T  AA EM  RV++++         
Sbjct: 70  IVAGAGSGKTSVLTRRIAHLLQTGVAPWQVLAITFTNKAAGEMRERVVDLV--------- 120

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANIT 154
                     G +  K                   + V T H+ C  I++    L   + 
Sbjct: 121 ----------GPQAEK-------------------MWVSTFHSMCVRILRANANLVPGLN 151

Query: 155 SHFAIADEEQSKKLI 169
           ++F I D + SK+LI
Sbjct: 152 TNFTIYDSDDSKRLI 166


>gi|224372826|ref|YP_002607198.1| ATP-dependent helicase [Nautilia profundicola AmH]
 gi|223588787|gb|ACM92523.1| ATP-dependent helicase [Nautilia profundicola AmH]
          Length = 675

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 17 ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQL  A+ P     V A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3  LSRLNKEQLQAATAPLGHNLVIASAGTGKTSTIVGRIAYLLEEGIKPEEILLLTFTNKAA 62

Query: 76 AEMSHRVLEIITAWSHL 92
           EM  RV  ++ +  ++
Sbjct: 63 QEMKERVAGVLPSARNI 79


>gi|315635996|ref|ZP_07891256.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479717|gb|EFU70390.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 182

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 6  SFQEHSETIDL-ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPS 63
          +F+ H   I + +S    EQL A+   +    + A+AG+GKT  +V R+  LL +  +P 
Sbjct: 9  TFKTHKRIIFMPLSNLNQEQLQAATCHQGFNLIIASAGTGKTSTIVGRIAYLLNSGINPK 68

Query: 64 TLLCLTHTKAAAAEMSHRV 82
           +L LT T  AAAEM +RV
Sbjct: 69 EILLLTFTNKAAAEMINRV 87


>gi|254373289|ref|ZP_04988777.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571015|gb|EDN36669.1| exodeoxyribonuclease V beta chain [Francisella novicida GA99-3549]
          Length = 1216

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           DE               +SD    +HL  ++LE      + TIH FC+ ++ +
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115


>gi|308189989|ref|YP_003922920.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER]
 gi|307624731|gb|ADN69036.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER]
          Length = 723

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 43/169 (25%)

Query: 9   EHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           +  E ++ ++  + E L+  D P R   + A AGSGKT +L ++V  L+      P ++L
Sbjct: 3   KRDEILNSLNAEQKEALMYFDGPLR---IIAGAGSGKTRVLTRKVAYLINELGISPRSIL 59

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EMS RV + +                   G++ N+ D+            
Sbjct: 60  AVTFTNKAANEMSERVKQYV-------------------GEEANQIDIC----------- 89

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                   T H+    I+++  +  N+++ F I DE   K +I +  K+
Sbjct: 90  --------TFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130


>gi|26992028|ref|NP_747453.1| DNA-dependent helicase II [Pseudomonas putida KT2440]
 gi|24987163|gb|AAN70917.1|AE016735_10 DNA helicase II [Pseudomonas putida KT2440]
          Length = 728

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  R+ +++        
Sbjct: 30  VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P G+ V T H     +++    EA + 
Sbjct: 84  --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +F I D +  ++LI+   +
Sbjct: 112 QNFQILDSDDQQRLIKRVMR 131


>gi|148550460|ref|YP_001270562.1| DNA-dependent helicase II [Pseudomonas putida F1]
 gi|148514518|gb|ABQ81378.1| ATP-dependent DNA helicase UvrD [Pseudomonas putida F1]
 gi|313496365|gb|ADR57731.1| UvrD [Pseudomonas putida BIRD-1]
          Length = 728

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  R+ +++        
Sbjct: 30  VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P G+ V T H     +++    EA + 
Sbjct: 84  --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +F I D +  ++LI+   +
Sbjct: 112 QNFQILDSDDQQRLIKRVMR 131


>gi|258545647|ref|ZP_05705881.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
 gi|258519114|gb|EEV87973.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
          Length = 723

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 43/167 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +  +++ + E +  + P R+  V A AGSGKT +LVQR+  L+ +    P  LL LT
Sbjct: 4   SEILQGLNERQREAV--THPARAMRVIAGAGSGKTRVLVQRMQWLMAVEGVSPYGLLALT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP- 128
            T  AA EM  R                                       L   L+ P 
Sbjct: 62  FTNKAAREMRQR---------------------------------------LEAALQRPL 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G L + T H  C  I+++  L       F I D +   +L++   ++
Sbjct: 83  GQLWMGTFHGICHRILRRHALLMQWPEQFVIMDSDDQLRLVKRMMRA 129


>gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc7942_1157 [Synechococcus elongatus PCC
           7942]
 gi|23957809|gb|AAN40822.1| unknown [Synechococcus elongatus PCC 7942]
 gi|81168847|gb|ABB57187.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 1061

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 40/202 (19%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMS 79
           EQ  A     S  V+A AG+GKT +L QR L  L     +  P  ++ LT T+ AAAE+ 
Sbjct: 6   EQRQAVQAAGSVAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKAAAELR 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                   +  K P++SD           L      ++ T H+ 
Sbjct: 66  SRIRK------------------AVGNKWPDRSDW----------LAEVEAAQISTFHSL 97

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  I ++ P  A   + F I D+   K      +++ L + M    +EL  + +++++ S
Sbjct: 98  CARICREHPAAAGQPADFTILDDLAGKLW----QQTVLTAAM----QELDPSCFDVMDYS 149

Query: 200 NDED-IETLISDIISNRTALKL 220
                +ETL+ D + ++  L +
Sbjct: 150 EWRSLLETLLDDPVRSQALLAV 171


>gi|238809942|dbj|BAH69732.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 723

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 43/169 (25%)

Query: 9   EHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           +  E ++ ++  + E L+  D P R   + A AGSGKT +L ++V  L+      P ++L
Sbjct: 3   KRDEILNSLNAEQKEALMYFDGPLR---IIAGAGSGKTRVLTRKVAYLINELGISPRSIL 59

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EMS RV + +                   G++ N+ D+            
Sbjct: 60  AVTFTNKAANEMSERVKQYV-------------------GEEANQIDIC----------- 89

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                   T H+    I+++  +  N+++ F I DE   K +I +  K+
Sbjct: 90  --------TFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130


>gi|325062285|gb|ADY65975.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
          Length = 688

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AGSGKT+ L  RV  L++  A P  +L +T ++ AA+EMS RV  I
Sbjct: 36 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAASEMSRRVERI 83


>gi|313903519|ref|ZP_07836910.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM
          13965]
 gi|313466340|gb|EFR61863.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM
          13965]
          Length = 791

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          DL++     Q  A + P     V A AGSGKT +L +RV  LL     P  +L +T T  
Sbjct: 3  DLLADLNPAQREAVTHPGGPVLVLAGAGSGKTRVLTRRVAYLLEQGVAPHQILAITFTNK 62

Query: 74 AAAEMSHRVLEIITA 88
          AA EM  RV +++ A
Sbjct: 63 AAREMRERVEQLVGA 77


>gi|309799179|ref|ZP_07693429.1| DNA-dependent ATPase I and helicase II [Streptococcus infantis
          SK1302]
 gi|308117196|gb|EFO54622.1| DNA-dependent ATPase I and helicase II [Streptococcus infantis
          SK1302]
          Length = 338

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A  G+GKT IL +RV  +L  N H  P  ++CLT+T+A A+EM  R+  +I
Sbjct: 34 VIAGPGTGKTQILSRRVANIL-TNYHTNPEEIVCLTYTEAGASEMLDRLEGLI 85


>gi|134301565|ref|YP_001121533.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049342|gb|ABO46413.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 1217

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           DE               +SD    +HL  ++LE      + TIH FC+ ++ +
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115


>gi|167036387|ref|YP_001671618.1| DNA-dependent helicase II [Pseudomonas putida GB-1]
 gi|166862875|gb|ABZ01283.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 728

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  R+ +++        
Sbjct: 30  VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P G+ V T H     +++    EA + 
Sbjct: 84  --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +F I D +  ++LI+   +
Sbjct: 112 QNFQILDSDDQQRLIKRVMR 131


>gi|323139146|ref|ZP_08074203.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322395617|gb|EFX98161.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 718

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           V A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEM+ RV  I
Sbjct: 63  VIAGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMTRRVERI 112


>gi|208779656|ref|ZP_03247001.1| exodeoxyribonuclease V, beta subunit [Francisella novicida FTG]
 gi|208744617|gb|EDZ90916.1| exodeoxyribonuclease V, beta subunit [Francisella novicida FTG]
          Length = 1216

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKILPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           DE               +SD    +HL  ++LE      + TIH FC+ ++ +
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115


>gi|187931411|ref|YP_001891395.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712320|gb|ACD30617.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 1217

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           DE               +SD    +HL  ++LE      + TIH FC+ ++ +
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115


>gi|223983369|ref|ZP_03633555.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM
           12042]
 gi|223964541|gb|EEF68867.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM
           12042]
          Length = 1076

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 21/112 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           VSA+AG+GKT +LV R+++ +L + H S   ++ +T T+AAA+EM  R+L+       L+
Sbjct: 22  VSASAGAGKTTVLVARLMKRMLED-HISIDRIVAMTFTEAAASEMKKRLLQ------SLN 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           D        K+Q    ++++    R  LI +        + TIH+FC +I++
Sbjct: 75  D--------KLQEPDLDEAEAQYCRQQLILL----QSAHISTIHSFCLSIIK 114


>gi|319777271|ref|YP_004136922.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64]
 gi|318038346|gb|ADV34545.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64]
          Length = 723

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 43/169 (25%)

Query: 9   EHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           +  E ++ ++  + E L+  D P R   + A AGSGKT +L ++V  L+      P ++L
Sbjct: 3   KRDEILNSLNAEQKEALMYFDGPLR---IIAGAGSGKTRVLTRKVAYLINELGISPRSIL 59

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EMS RV + +                   G++ N+ D+            
Sbjct: 60  AVTFTNKAANEMSERVKQYV-------------------GEEANQIDIC----------- 89

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                   T H+    I+++  +  N+++ F I DE   K +I +  K+
Sbjct: 90  --------TFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130


>gi|229825742|ref|ZP_04451811.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC
          49176]
 gi|229790305|gb|EEP26419.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC
          49176]
          Length = 1183

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82
          VSA AGSGKT +L++RV+  LL    P     LL +T T+ AA EM  R+
Sbjct: 22 VSAAAGSGKTAVLIERVMGRLLDERAPINIDELLVVTFTRDAAGEMKERI 71


>gi|210623345|ref|ZP_03293743.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM
          13275]
 gi|210153655|gb|EEA84661.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM
          13275]
          Length = 755

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L+     P+ +L +T T  AA EM  RV E +
Sbjct: 25 AGAGSGKTRVLTTRIAHLIDKGVQPANILAITFTNKAANEMRERVEETV 73


>gi|150020672|ref|YP_001306026.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
 gi|149793193|gb|ABR30641.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
          Length = 630

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 38/138 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A  GSGKT ++  ++  L+ +   P+ ++ +T TKAAA EM  R              
Sbjct: 26  VIAGPGSGKTRVITYKIAHLIDSGIKPNEIMLVTFTKAAAREMLQR-------------- 71

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                      K  +KS+++              G+   T H  C   ++++     + S
Sbjct: 72  ----------AKVVSKSNLN--------------GITAGTFHHVCNLFLRRYGRLIGLKS 107

Query: 156 HFAIADEEQSKKLIEEAK 173
           +F I D E +K L+E  +
Sbjct: 108 NFTILDSEDAKDLMESTR 125


>gi|320327008|gb|EFW83024.1| hypothetical protein PsgRace4_26815 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 633

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          D  ++  +S  AGSGKT+ LVQ  +R +LA     T+ C+T+T AA AE+  R+
Sbjct: 20 DQGKNFLLSGGAGSGKTYSLVQ-FIRQVLAEDPKKTIACITYTNAAVAEIRGRI 72


>gi|311107647|ref|YP_003980500.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8]
 gi|310762336|gb|ADP17785.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8]
          Length = 707

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT+ L  RV  L+L  A P  +L LT ++ AA EM  RV  ++
Sbjct: 51  VIAGAGSGKTNTLAHRVAHLILNGADPQRMLLLTFSRRAALEMERRVGSVL 101


>gi|300813620|ref|ZP_07093948.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512256|gb|EFK39428.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 229

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 37/151 (24%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           + AG+GKT +L QR + ++ A N     +L LT T  A  EM++R+   +   S+     
Sbjct: 22  SGAGTGKTGVLTQRFINIIKAQNGKFDNILALTFTDKATEEMNNRIYHELAKTSY----- 76

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
               I K                           L + TIH+FC+ ++  +    +I S+
Sbjct: 77  -DFNIDK---------------------------LNIMTIHSFCKDLILSYNRYLHINSN 108

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           F + ++   + L++E+ K  L++    NNE+
Sbjct: 109 FDLDNDFFCQILLKESIKKILSTY---NNED 136


>gi|281423244|ref|ZP_06254157.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302]
 gi|281402580|gb|EFB33411.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302]
          Length = 1075

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L  + ++LL+ N H     L +T T  A  EM  R+L  +   S  L + 
Sbjct: 9   ASAGSGKTFTLAVQYIKLLVENPHAYRHTLAVTFTNKATEEMKMRILSQLYGISRGLKES 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E  K Q      + ++ A + L  ++      +V+TI AF + +++    E  +T+
Sbjct: 69  KPYLESVKQQTSLDETTIINNASYALSELIHNYSYFRVETIDAFFQTVLRNLARELELTA 128

Query: 156 HFAIADEEQS------KKLIEEAKKSTL 177
           +  I   +Q        +LIE    S+L
Sbjct: 129 NLRIELNDQQVEQQAVDQLIENLDASSL 156


>gi|148378439|ref|YP_001252980.1| recombination helicase AddA [Clostridium botulinum A str. ATCC
           3502]
 gi|251764512|sp|A5HYY0|ADDA_CLOBH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|148287923|emb|CAL81989.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC
           3502]
          Length = 1279

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LVQR++  +L    P     LL +T T AAAAEM  R+ + I   S   DE   ++
Sbjct: 31  KTAVLVQRIIEKILDKGEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKGLDEDPESK 87

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           + + Q    NKS+                   + TIH+FC  +++       I  +F I 
Sbjct: 88  VLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNFHTMEIDPNFRIC 128

Query: 161 DEEQSKKLIEEA 172
           DE +   + +EA
Sbjct: 129 DETEGILMKQEA 140


>gi|144575164|gb|AAZ43952.2| atp-dependent helicase [Mycoplasma synoviae 53]
          Length = 734

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 37/135 (27%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT +L +++L L+L     PS +L +T T  AA EM  R+              
Sbjct: 32  AGAGTGKTKVLTRKILYLILEKKVDPSKILAVTFTNKAAKEMKDRI-------------- 77

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                        N     K + L   +          T+H+FC  +++++      + +
Sbjct: 78  -------------NSKYYDKQKVLFENVF---------TLHSFCAQVLRKYINLIGFSRN 115

Query: 157 FAIADEEQSKKLIEE 171
           F I DE   K+++++
Sbjct: 116 FPILDELDKKQVLQD 130


>gi|118497936|ref|YP_898986.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
           tularensis subsp. novicida U112]
 gi|194323158|ref|ZP_03056942.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118423842|gb|ABK90232.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
           novicida U112]
 gi|194322522|gb|EDX20002.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 1216

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93
           + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV  EI    +  +
Sbjct: 17  IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           DE               +SD    +HL  ++LE      + TIH FC+ ++ +
Sbjct: 77  DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115


>gi|325103975|ref|YP_004273629.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
 gi|324972823|gb|ADY51807.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
          Length = 768

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +D +    S Q  A + T     + A AGSGKT ++  RV  L+     P  +L LT T 
Sbjct: 3  LDYLKGLNSSQRQAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIQKGVDPFQILVLTFTN 62

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+ +++
Sbjct: 63 KAAKEMRDRITKVV 76


>gi|153930858|ref|YP_001382829.1| recombination helicase AddA [Clostridium botulinum A str. ATCC
           19397]
 gi|153935206|ref|YP_001386396.1| recombination helicase AddA [Clostridium botulinum A str. Hall]
 gi|251764508|sp|A7FPG0|ADDA_CLOB1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|152926902|gb|ABS32402.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC
           19397]
 gi|152931120|gb|ABS36619.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str.
           Hall]
          Length = 1279

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LVQR++  +L    P     LL +T T AAAAEM  R+ + I   S   DE   ++
Sbjct: 31  KTAVLVQRIIEKILDKGEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKGLDEDPESK 87

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           + + Q    NKS+                   + TIH+FC  +++       I  +F I 
Sbjct: 88  VLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNFHTMEIDPNFRIC 128

Query: 161 DEEQSKKLIEEA 172
           DE +   + +EA
Sbjct: 129 DETEGILMKQEA 140


>gi|260429772|ref|ZP_05783748.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45]
 gi|260419255|gb|EEX12509.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45]
          Length = 680

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 56/134 (41%), Gaps = 31/134 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  L  RV  LL+  A P  +L +T ++ AA E++ RV E ITA       
Sbjct: 33  VIAGAGSGKTMTLAHRVAHLLVNGADPQRILLMTFSRRAATELTRRV-ERITA------- 84

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  K  GK      +S A                 T HA    I+++  L   +  
Sbjct: 85  -------KAMGKGVVAEALSWA----------------GTFHAIGARILREHALSIGLHP 121

Query: 156 HFAIADEEQSKKLI 169
            F+I D E S  L+
Sbjct: 122 DFSIHDREDSADLM 135


>gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c [Synechococcus elongatus PCC 6301]
 gi|56685361|dbj|BAD78583.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1061

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 42/203 (20%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMS 79
           EQ  A     S  V+A AG+GKT +L QR L  L     +  P  ++ LT T+ AAAE+ 
Sbjct: 6   EQRQAVQAAGSVAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKAAAELR 65

Query: 80  HRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            R+ + +   W   SD +   E  +I                              T H+
Sbjct: 66  SRIRKAVGNKWPDRSDWLAEVEAAQI-----------------------------STFHS 96

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I ++ P  A   + F I D+   K      +++ L + M    +EL  + +++++ 
Sbjct: 97  LCARICREHPAAAGQPADFTILDDLAGKLW----QQTVLTAAM----QELDPSCFDVMDY 148

Query: 199 SNDED-IETLISDIISNRTALKL 220
           S     +ETL+ D + ++  L +
Sbjct: 149 SEWRPLLETLLDDPVRSQALLAV 171


>gi|194290339|ref|YP_002006246.1| DNA-dependent atpase i and helicase ii [Cupriavidus taiwanensis
          LMG 19424]
 gi|193224174|emb|CAQ70183.1| DNA-dependent ATPase I and helicase II [Cupriavidus taiwanensis
          LMG 19424]
          Length = 782

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHT 71
          DL++   +EQL A + P   A + A AGSGKT +L  R+   L+ N H  P+ +L +T T
Sbjct: 3  DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRI-AWLIQNGHVSPAGILAVTFT 61

Query: 72 KAAAAEMSHRVLEII 86
            AA EM  R+  ++
Sbjct: 62 NKAAKEMQTRLSSML 76


>gi|167836886|ref|ZP_02463769.1| DNA helicase II [Burkholderia thailandensis MSMB43]
          Length = 669

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|167824492|ref|ZP_02455963.1| DNA helicase II [Burkholderia pseudomallei 9]
          Length = 525

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|71894555|ref|YP_278663.1| ATP-dependent helicase [Mycoplasma synoviae 53]
          Length = 726

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 37/135 (27%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT +L +++L L+L     PS +L +T T  AA EM  R+              
Sbjct: 24  AGAGTGKTKVLTRKILYLILEKKVDPSKILAVTFTNKAAKEMKDRI-------------- 69

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                        N     K + L   +          T+H+FC  +++++      + +
Sbjct: 70  -------------NSKYYDKQKVLFENVF---------TLHSFCAQVLRKYINLIGFSRN 107

Query: 157 FAIADEEQSKKLIEE 171
           F I DE   K+++++
Sbjct: 108 FPILDELDKKQVLQD 122


>gi|116073017|ref|ZP_01470279.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916]
 gi|116068322|gb|EAU74074.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916]
          Length = 1222

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 28/149 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + A+AG+GKT  L   VLRLL    +P     LL +T T+AAAAE+  R+          
Sbjct: 20  LEASAGTGKTFALAHLVLRLLSEGPNPLQVEQLLVVTFTEAAAAELRDRIA--------- 70

Query: 93  SDEILSAEITKIQGKKPNKSD---------MSKARH-----LLITILETPGGLKVQTIHA 138
               L   +  +QG   +  D          S+  H      L+  LE      + TIH 
Sbjct: 71  --RRLQQALALLQGADADAMDRPLQEWITAQSQTLHRTMEGRLLLALERLDRADITTIHG 128

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKK 167
           FC   +Q+  LEA +    ++  +   ++
Sbjct: 129 FCRRTLQRQALEAGLGPAVSLESQGHDRR 157


>gi|265762686|ref|ZP_06091254.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255294|gb|EEZ26640.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 1624

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 16   LISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
            L  Q    Q+  ++   +R   V+A  GSGKT +LV ++  LLL  +     LL LT ++
Sbjct: 1069 LFGQLSKRQMDIISDKGSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSR 1128

Query: 73   AAAAEMSHRVLEIITAWSHL 92
            AAA E   R++E+I   +H 
Sbjct: 1129 AAATEFKQRLIELIGNAAHF 1148


>gi|284040435|ref|YP_003390365.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
 gi|283819728|gb|ADB41566.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
          Length = 764

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)

Query: 28 SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
          +DP R A         + A AGSGKT +L  R+  L+     P  +L LT T  AA EM 
Sbjct: 9  NDPQREAVMHGSGPLMIIAGAGSGKTRVLTYRIAHLIENGVDPFRILSLTFTNKAAGEMR 68

Query: 80 HRVLEII 86
          +R+ +++
Sbjct: 69 NRIEKVV 75


>gi|326800328|ref|YP_004318147.1| UvrD/REP helicase [Sphingobacterium sp. 21]
 gi|326551092|gb|ADZ79477.1| UvrD/REP helicase [Sphingobacterium sp. 21]
          Length = 761

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT ++  RV  L+     P  +L LT T  AA EM  R+++++
Sbjct: 24 IVAGAGSGKTRVITYRVAHLIQKGIDPFNILVLTFTNKAAKEMRERIMKVV 74


>gi|209521793|ref|ZP_03270474.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209497763|gb|EDZ97937.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 471

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           V A AGSGKT+ L  RV  L++  A P  +L LT ++ AA EM+ RV  I
Sbjct: 58  VIAGAGSGKTNTLAHRVANLVVKGADPQRILLLTFSRRAALEMTRRVTRI 107


>gi|270157203|ref|ZP_06185860.1| DNA helicase II [Legionella longbeachae D-4968]
 gi|289164396|ref|YP_003454534.1| DNA helicase II [Legionella longbeachae NSW150]
 gi|269989228|gb|EEZ95482.1| DNA helicase II [Legionella longbeachae D-4968]
 gi|288857569|emb|CBJ11407.1| DNA helicase II [Legionella longbeachae NSW150]
          Length = 721

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 61/156 (39%), Gaps = 45/156 (28%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+   N  P  +L +T T  AA EM  R       
Sbjct: 21  PLGNTLVLAGAGSGKTKVLVSRIAWLVAEQNLSPHGILAVTFTNKAAGEMRAR------- 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCEAIMQQF 147
                                           L  IL  P  GL V T H  C  ++++ 
Sbjct: 74  --------------------------------LNNILNMPVMGLWVGTFHGLCHRLLRRH 101

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             EA++   F I D E   ++I    K  +A++ LD
Sbjct: 102 YKEAHLPELFHILDTEDQARMI----KRVIAALNLD 133


>gi|321310938|ref|YP_004193267.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802782|emb|CBY93428.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
          Length = 584

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM---------- 78
           P +   V A AG+GKT +L +R++ L+ +N A P  +L +T T  AA EM          
Sbjct: 14  PPKPILVIAPAGTGKTRVLTERIIYLIESNIAAPDEILAITFTNLAANEMVSRVENRIKD 73

Query: 79  SHRVLEIITAWSHLSDEILSAEI 101
            HR+ + I     L  EIL  +I
Sbjct: 74  KHRIPDAIGTIHSLFGEILRKDI 96


>gi|281420135|ref|ZP_06251134.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM
           18205]
 gi|281405935|gb|EFB36615.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM
           18205]
          Length = 1070

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L +  + L++AN A   T+L +T T  A  EM  R+L  +   +H   E 
Sbjct: 10  ASAGSGKTFTLAREYMTLVIANPASYRTILAVTFTNKATEEMKMRILGKLYEIAHGLPEA 69

Query: 97  LSAEITKIQGKKPN------KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            +  + +IQ   P       + +   A HLLI         +V TI  F +++++    E
Sbjct: 70  -NDYVNQIQQALPYLSSKQIQKNAESALHLLI---HNYNYFRVMTIDTFFQSVLRNLARE 125

Query: 151 ANITSHFAI 159
            ++T++  I
Sbjct: 126 LDLTANLRI 134


>gi|269796104|ref|YP_003315559.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542]
 gi|269098289|gb|ACZ22725.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542]
          Length = 857

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 52/135 (38%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL    A PS +L +T T  AAAEM  RV  I+        
Sbjct: 48  IVAGAGSGKTRVLTHRIAHLLATGRARPSEILAITFTNKAAAEMRERVAAIVGP------ 101

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                             G + V T H+ C  I+++      + 
Sbjct: 102 --------------------------------AAGRMWVSTFHSACVRILRREAKSLGLR 129

Query: 155 SHFAIADEEQSKKLI 169
             F+I D   S++LI
Sbjct: 130 QSFSIYDSADSQRLI 144


>gi|119943802|ref|YP_941482.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
 gi|119862406|gb|ABM01883.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
          Length = 723

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 43/157 (27%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
           S P ++  V A AGSGKT +L  R+  L+     P+ ++L +T T  AA EM  R+ +I 
Sbjct: 19  SAPEQNMLVLAGAGSGKTRVLTHRIAWLMQVENIPTYSILAVTFTNKAAKEMRGRITDIC 78

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                                                  +  GG+ + T H     +++ 
Sbjct: 79  P--------------------------------------QQIGGMWIGTFHGTAHRLLRL 100

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              EAN+   F I D +  KK++    K  + S+ LD
Sbjct: 101 HYQEANLPEQFQIIDSDDQKKMV----KRIIKSLNLD 133


>gi|262385344|gb|ACY64665.1| SRS2 [Arabidopsis thaliana]
          Length = 1147

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 45/164 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A  GSGKT  +V RVL LL     PS +L +T TKAA +EM  R              
Sbjct: 265 VIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKAATSEMRER-------------- 310

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                I K  GKK  K                   + + T H+F   + +    +   TS
Sbjct: 311 -----IGKSAGKKAAKD------------------ITISTFHSFSLQLCRMHADKLQRTS 347

Query: 156 HFAIADEEQSKKLI--------EEAKKSTLASIMLDNNEELKKA 191
            F++    Q ++ I        EE K  +  S+  ++ E L  A
Sbjct: 348 EFSVYGHGQQRRAIIEAVRLYEEEKKNGSKTSVPCESGEGLNGA 391


>gi|259507108|ref|ZP_05750008.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
 gi|259165386|gb|EEW49940.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
          Length = 824

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 25/189 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L +R+  L+     HP  +L +T T  AAAEM  RV ++         
Sbjct: 64  IVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTNKAAAEMRERVADLVGPVAQRMW 123

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +  +  +   IL  +   +QG   N +  D   +R LL T++     L ++   A   + 
Sbjct: 124 VATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLL-TMIAKDLELDIKKFSARTLSS 182

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
                    I+   A+AD E++    E    + +A + ++  + L++A        N  D
Sbjct: 183 AISNLKNELISPSEALADAERTHNPFE----TVVARVYVEYQQRLRRA--------NAVD 230

Query: 204 IETLISDII 212
            + LI +++
Sbjct: 231 FDDLIGEVV 239


>gi|25027486|ref|NP_737540.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492768|dbj|BAC17740.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 825

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 25/189 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L +R+  L+     HP  +L +T T  AAAEM  RV ++         
Sbjct: 65  IVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTNKAAAEMRERVADLVGPVAQRMW 124

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +  +  +   IL  +   +QG   N +  D   +R LL T++     L ++   A   + 
Sbjct: 125 VATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLL-TMIAKDLELDIKKFSARTLSS 183

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
                    I+   A+AD E++    E    + +A + ++  + L++A        N  D
Sbjct: 184 AISNLKNELISPSEALADAERTHNPFE----TVVARVYVEYQQRLRRA--------NAVD 231

Query: 204 IETLISDII 212
            + LI +++
Sbjct: 232 FDDLIGEVV 240


>gi|240256061|ref|NP_194242.6| ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase
           [Arabidopsis thaliana]
          Length = 1149

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 45/164 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A  GSGKT  +V RVL LL     PS +L +T TKAA +EM  R              
Sbjct: 265 VIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKAATSEMRER-------------- 310

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                I K  GKK  K                   + + T H+F   + +    +   TS
Sbjct: 311 -----IGKSAGKKAAKD------------------ITISTFHSFSLQLCRMHADKLQRTS 347

Query: 156 HFAIADEEQSKKLI--------EEAKKSTLASIMLDNNEELKKA 191
            F++    Q ++ I        EE K  +  S+  ++ E L  A
Sbjct: 348 EFSVYGHGQQRRAIIEAVRLYEEEKKNGSKTSVPCESGEGLNGA 391


>gi|229918202|ref|YP_002886848.1| recombination helicase AddA [Exiguobacterium sp. AT1b]
 gi|229469631|gb|ACQ71403.1| recombination helicase AddA [Exiguobacterium sp. AT1b]
          Length = 1205

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 25/130 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           VSA AGSGKT +LV+R+   LL      T   +L +T T AAAAEM  R+ + +      
Sbjct: 22  VSAAAGSGKTAVLVERLSSRLLDETDELTADRMLVVTFTNAAAAEMKRRIAKAL------ 75

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +E L  +        P    + K R +L   L       + TIH+FC  ++++     +
Sbjct: 76  -EEALRDD--------PTNEYVRKQRQMLNRAL-------ITTIHSFCLEVIRENYYLLD 119

Query: 153 ITSHFAIADE 162
           +   F IA+E
Sbjct: 120 LDPAFKIAEE 129


>gi|288925108|ref|ZP_06419044.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17]
 gi|288338298|gb|EFC76648.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17]
          Length = 819

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 43/188 (22%)

Query: 14  IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL+S+    Q  A +     + V A AGSGKT +L  ++  LL     P  +L LT T 
Sbjct: 2   VDLLSELNDSQREAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLQRGVRPYNILALTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ +++     L+                                     L+
Sbjct: 62  KAAAEMKARIGKLVGERDALA-------------------------------------LR 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    I++         S+F I DE  S+ LI+   K   A      NE++ +  
Sbjct: 85  MGTFHSVFSRILRVEAAHIGYNSNFTIYDESDSRSLIKTIVKELAAG-----NEKMDEKQ 139

Query: 193 YEILEISN 200
           Y+   + N
Sbjct: 140 YKPATVHN 147


>gi|255534061|ref|YP_003094433.1| exodeoxyribonuclease V [Pedobacter heparinus DSM 2366]
 gi|255347045|gb|ACU06371.1| Exodeoxyribonuclease V [Pedobacter heparinus DSM 2366]
          Length = 1073

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AGSGKT  L    L LLL+  +    +L +T T  A  EM  R+L+++  ++   D
Sbjct: 9   LQASAGSGKTFSLTAHYLTLLLSGENKYREILAVTFTNKATEEMKSRILDVLQGFA-TGD 67

Query: 95  EILSAEITKIQGKKP--NKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           E  ++    +    P  N   +  KA  +   IL       V TI  F + +++ F  E 
Sbjct: 68  EKFNSYRNIVLNANPTLNADQLKEKADQIYRKILHDYSRFSVSTIDGFVQKVIRGFAFEL 127

Query: 152 NITSHFAI 159
            + + +++
Sbjct: 128 GLDAGYSL 135


>gi|312199973|ref|YP_004020034.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c]
 gi|311231309|gb|ADP84164.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c]
          Length = 834

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
           + A AGSGKT +L  R+  LL A N HP  +L +T T  AA EM  RV
Sbjct: 81  IVAGAGSGKTRVLAHRIAYLLAARNVHPGEILAITFTNKAANEMRERV 128


>gi|167719901|ref|ZP_02403137.1| DNA helicase II [Burkholderia pseudomallei DM98]
          Length = 535

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|261252168|ref|ZP_05944741.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891]
 gi|260935559|gb|EEX91548.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891]
          Length = 1205

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +  P T          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGSPETKHQVPLTVDQILVVTFTEAATAELRDRIRAR 82

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A    SD ++   + ++       SD  +A  +L+          V TIH F
Sbjct: 83  IHDARLAFARGKSSDPVIEPLLDEV-------SDHKQAAEILLQAERQMDEAAVYTIHGF 135

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 136 CQRMLTQNAFESG 148


>gi|226356134|ref|YP_002785874.1| DNA helicase [Deinococcus deserti VCD115]
 gi|226318124|gb|ACO46120.1| putative DNA helicase UvrD [Deinococcus deserti VCD115]
          Length = 744

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          DL+SQ    Q  A+D  T  A V A AGSGKT  LV R+  L+      P  +L +T T 
Sbjct: 11 DLLSQLNDTQAQAADHFTGPALVIAGAGSGKTRTLVYRIAHLIQHYGVDPGEILAVTFTN 70

Query: 73 AAAAEMSHRVLEIITAWSHL 92
           AAAEM  R   ++     L
Sbjct: 71 KAAAEMRERAQHLVEGADRL 90


>gi|260911842|ref|ZP_05918409.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634053|gb|EEX52176.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 1074

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL-SD 94
           A+AGSGKT  L    +++LL N H    +L +T T  A  EM  R+L ++   W  L S 
Sbjct: 10  ASAGSGKTFTLAVNYIKILLRNPHSYRNILAVTFTNKATEEMKLRILSQLYGIWKLLPSS 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           +    ++T      P  +   +A   L  +L      +V+TI  F +A+++    E ++T
Sbjct: 70  KGYLDKVTSELDITPEYAS-QQAGAALSNLLHNYNYFRVETIDTFFQAVLRNLARELDLT 128

Query: 155 S--HFAIAD---EEQS-KKLIEE 171
           +  H  + D   E+Q+  KLIEE
Sbjct: 129 ANLHVGLNDSQVEQQAVDKLIEE 151


>gi|254198264|ref|ZP_04904686.1| DNA helicase II [Burkholderia pseudomallei S13]
 gi|169655005|gb|EDS87698.1| DNA helicase II [Burkholderia pseudomallei S13]
          Length = 787

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAVPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|325279041|ref|YP_004251583.1| ATP-dependent DNA helicase, RecQ family [Odoribacter splanchnicus DSM
            20712]
 gi|324310850|gb|ADY31403.1| ATP-dependent DNA helicase, RecQ family [Odoribacter splanchnicus DSM
            20712]
          Length = 1655

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 26/169 (15%)

Query: 24   QLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRV 82
            ++++   +R   V+A  GSGKT +LV ++   LLL +     LL LT ++AAA E   R+
Sbjct: 1107 EIISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQRL 1166

Query: 83   LEIITAWSHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
            +E+I   +H  + +   +    + G+  N              LE      V+ + A   
Sbjct: 1167 MELIGNAAHFVEIKTFHSYCFDLMGRIGN--------------LEA-----VRDVVAKAA 1207

Query: 142  AIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
             ++ Q  +E N I     + DE Q   + E A    L   ++ NNEE++
Sbjct: 1208 VMINQGEVEPNKIGKTVLVIDEAQDMGVAEHA----LVKALMANNEEMR 1252


>gi|224541822|ref|ZP_03682361.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525245|gb|EEF94350.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1181

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 22/130 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAW 89
           ++  VSA AGSGKT ILV R++ L++ N H S    L LT TKAA  EM  R L +    
Sbjct: 20  KTILVSAPAGSGKTRILVARLISLIV-NDHYSMDQFLVLTFTKAAGNEMKQR-LNVSLHE 77

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L+D                  D    RH+   I   P    + T  +FC+ +++++  
Sbjct: 78  EALADH-----------------DEETLRHIQEQIQLLPHAY-ITTFDSFCKTLLEKYGY 119

Query: 150 EANITSHFAI 159
              +   F +
Sbjct: 120 LIGVMPGFKV 129


>gi|319408809|emb|CBI82466.1| DNA helicase II [Bartonella schoenbuchensis R1]
          Length = 805

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L L  AHP  +L +T T  AA EM  R+ E++
Sbjct: 64  VLAGAGTGKTRVLTTRIFHILHLGLAHPKQILAITFTNKAAREMKTRIAELV 115


>gi|268680032|ref|YP_003304463.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618063|gb|ACZ12428.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 676

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A+ P+    + A+AG+GKT  +V R+  LL     PS +L LT T  AAAEM  RV
Sbjct: 14 ATAPSGYNLIIASAGTGKTSTIVARLAYLLKNGVAPSKILLLTFTNKAAAEMIERV 69


>gi|206900332|ref|YP_002251111.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12]
 gi|206739435|gb|ACI18493.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12]
          Length = 625

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 39/160 (24%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           +D + +   EQL A  +  R   + A AGSGKT ++  ++  L+  N A P  ++ LT T
Sbjct: 1   MDFLKELNKEQLEAVLEIERPVLILAGAGSGKTRVITYKIAYLIKNNIAKPENIVALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++ A    +D++ +                                 
Sbjct: 61  NKAAEEMKKRINNMLGAKD--ADKVWAG-------------------------------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
              T H F   +++ F    +++ +F I DE   + LI++
Sbjct: 87  ---TFHGFGLYLLKNFGKYWSLSPYFVIYDENDQEDLIKD 123


>gi|119713303|gb|ABL97368.1| DNA helicase II [uncultured marine bacterium HF10_45G01]
          Length = 428

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 40/142 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++    A P+ +L +T T  AA EM +RV +I+ +      
Sbjct: 27  IVAGAGSGKTKVLTSRIANIIKEKKAFPNQILAVTFTNKAAKEMQNRVSKILGS------ 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-VQTIHAFCEAIMQQFPLEANI 153
                                           T  GL  + T H+ C  ++++    AN+
Sbjct: 81  --------------------------------TAVGLSWLGTFHSICAKLLRKHASAANL 108

Query: 154 TSHFAIADEEQSKKLIEEAKKS 175
            S+F I D +   +LI+   K+
Sbjct: 109 NSNFTIIDTDDQIRLIKNICKA 130


>gi|15678500|ref|NP_275615.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621541|gb|AAB84978.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 916

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 39/129 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A  G+GKT +LV+RV  L+      P  +L +T T+ AA E+  R++  +        
Sbjct: 29  VVAGPGAGKTRVLVERVAYLVKRKGVSPENILVITFTEKAAGELKARLINCVG------- 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L AE+                             +++ TIH+FC  ++   P E    
Sbjct: 82  --LDAEL-----------------------------MQISTIHSFCSKVLSDHPEEHEFG 110

Query: 155 SHFAIADEE 163
           + F I DEE
Sbjct: 111 AGFEILDEE 119


>gi|325578673|ref|ZP_08148749.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
 gi|325159712|gb|EGC71843.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
          Length = 725

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 37/165 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4   SELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+ + ++  +                 +PN                   
Sbjct: 62  FTNKAAAEMRHRIQDTLSKHA-----------------QPNLF----------------- 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           G+ + T H+    +++    + N+   F I D E   +L++   K
Sbjct: 88  GMWIGTFHSIAHRLLRAHHFDVNLPQDFQILDSEDQLRLVKRLMK 132


>gi|268607993|ref|ZP_06141724.1| recombination helicase AddA [Ruminococcus flavefaciens FD-1]
          Length = 1213

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 26/196 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKA 73
           ++ T+ +Q   S    S  VSA AGSGKT +L +R+++L+    +      ++ +T T  
Sbjct: 1   MAWTEQQQNAISARGSSVIVSAAAGSGKTAVLTERLVQLMADPESGVRADRIVVVTFTND 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+E+  R               L  ++  +  + P+   + + + LL +        K+
Sbjct: 61  AASELKKR---------------LDMKLRALISEDPSNGHLLRQQTLLQSA-------KI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI++FC  +++    +  IT+ F + DE  +  L   A       +  D  +++    Y
Sbjct: 99  STINSFCFDLIRDNISDQGITTGFGVLDESDNTVLKARAMDELFEEMSRDEYDKI-SFLY 157

Query: 194 EILEISNDEDIETLIS 209
           +   I N++ +  +IS
Sbjct: 158 DKFCIRNEKRLREVIS 173


>gi|224543224|ref|ZP_03683763.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523857|gb|EEF92962.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM
           15897]
          Length = 710

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 40/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  R+  L+     +P  +L +T T  AA EM  RV              
Sbjct: 26  AGAGSGKTRVITYRIAYLIEEVGVNPHNILAITFTNKAANEMKTRVE------------- 72

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                     +IL T  G  + TIH+ C  +++Q         +
Sbjct: 73  --------------------------SILGTSLGTTICTIHSLCVRVLRQHSTAIGYPHN 106

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I DEE  K LI++  K
Sbjct: 107 FIIMDEEDQKSLIKKLYK 124


>gi|225574652|ref|ZP_03783262.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038120|gb|EEG48366.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1221

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 34/201 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
           R+  VSA AGSGKT +LV+R+++ +     P     LL +T T+AAA EM  R       
Sbjct: 18  RNILVSAAAGSGKTAVLVERIIQRITDEEKPVDIDRLLVMTFTRAAAGEMRVR------- 70

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                   L   ++K   + P    + +   LL          ++ TI  FC  +++ + 
Sbjct: 71  --------LEQALSKRLEEDPENEYLQRQSTLL-------HNAQITTIDGFCSYLIRNYF 115

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
              ++   +  ADE + K L  +  +  L       + + ++         +DE +E L+
Sbjct: 116 HMIDLDPGYRTADEGELKLLRVDVVREVLEECYAQKSSDFEEFAECFAPGKSDEGLEELV 175

Query: 209 SDIISNRTALKLIFFFFSYLW 229
                    LKL  F  S  W
Sbjct: 176 ---------LKLYDFAMSAPW 187


>gi|219556815|ref|ZP_03535891.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
 gi|289568920|ref|ZP_06449147.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
 gi|289542674|gb|EFD46322.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
          Length = 422

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|198277296|ref|ZP_03209827.1| hypothetical protein BACPLE_03508 [Bacteroides plebeius DSM 17135]
 gi|198269794|gb|EDY94064.1| hypothetical protein BACPLE_03508 [Bacteroides plebeius DSM 17135]
          Length = 1606

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66
            +++ +    +SQ + E +++   +R   V+A  GSGKT +LV ++   LLL +     LL
Sbjct: 1047 EKYKQLFGQLSQRQME-IISDKESRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1105

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSH 91
             LT ++AAA E   R++E+I   +H
Sbjct: 1106 MLTFSRAAATEFKQRLMELIGNAAH 1130


>gi|86749818|ref|YP_486314.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86572846|gb|ABD07403.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
          Length = 686

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT+ L  RV  L++  A P  +L +T ++ AAAEM+ RV  I
Sbjct: 33 VIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMTFSRRAAAEMTRRVERI 82


>gi|167738899|ref|ZP_02411673.1| DNA helicase II [Burkholderia pseudomallei 14]
          Length = 370

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|268316024|ref|YP_003289743.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333558|gb|ACY47355.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 681

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 39/159 (24%)

Query: 13  TIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           T+D   Q   +Q  + +       V A AG+GKT  LV RV  L+     P  ++ LT T
Sbjct: 19  TVDYAGQLNPQQYAVVTAGGGPILVVAGAGTGKTRTLVYRVAYLVETGTPPEEIVLLTFT 78

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM  R           +  +L     ++QG                         
Sbjct: 79  RRAAREMLAR-----------AAALLDGRCERVQGG------------------------ 103

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
              T HAFC  +++++       S+F + D   +  +I+
Sbjct: 104 ---TFHAFCLGLLRRYAGRLGYPSNFTVLDASDAADVID 139


>gi|119472177|ref|ZP_01614379.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Alteromonadales bacterium
           TW-7]
 gi|119445096|gb|EAW26390.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Alteromonadales bacterium
           TW-7]
          Length = 1188

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTL---------LCLTHTKAAAAEMSHRVL-EI 85
           + A+AG+GKT+ +    LR LL    P  L         L +T T AA  E+  RV   I
Sbjct: 17  IEASAGTGKTYTITGLYLRYLLGMQIPGELNAPLSVEQILVVTFTDAATQEIKDRVRNRI 76

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I A   L  +  + E+  I+G      D  +A  LL    ++     + TIH FC+ +++
Sbjct: 77  IAARDALLGQTPNDEL--IEGVIAAIGDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134

Query: 146 QFPLEANI 153
           Q   E+ +
Sbjct: 135 QHAFESGV 142


>gi|16273110|ref|NP_439344.1| DNA-dependent helicase II [Haemophilus influenzae Rd KW20]
 gi|1174922|sp|Q02322|UVRD_HAEIN RecName: Full=DNA helicase II
 gi|1574115|gb|AAC22841.1| DNA helicase II (uvrD) [Haemophilus influenzae Rd KW20]
          Length = 727

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E++ A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5  SELLDGLNDKQRERVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 63 FTNKAAAEMRHRI 75


>gi|295677216|ref|YP_003605740.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295437059|gb|ADG16229.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 731

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           V A AGSGKT+ L  RV  L++  A P  +L LT ++ AA EM+ RV  I  A
Sbjct: 63  VIAGAGSGKTNTLAHRVANLVVKGADPQRILLLTFSRRAALEMTRRVTRITGA 115


>gi|71006344|ref|XP_757838.1| hypothetical protein UM01691.1 [Ustilago maydis 521]
 gi|46097274|gb|EAK82507.1| hypothetical protein UM01691.1 [Ustilago maydis 521]
          Length = 1176

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 40/160 (25%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEII 86
           PT    + A  GSGKT +L  RV  L+L  A+   P  +L +T T  AA EM  R++++I
Sbjct: 58  PTTCLQILAGPGSGKTRVLTSRVAWLILDPANKLRPEDILVVTFTNKAANEMKMRLVKLI 117

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                              GK                  E    L + T H+ C   +++
Sbjct: 118 -------------------GK------------------ERVDNLVIGTFHSVCARYLRK 140

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           +    +++++F+I D E +K++++   K   A +  +N E
Sbjct: 141 YGRLISLSNNFSIIDSEDAKRMLKSILKELKAELEKENLE 180


>gi|198277205|ref|ZP_03209736.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135]
 gi|198269703|gb|EDY93973.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135]
          Length = 1075

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE----IITAWSHL 92
           A+AGSGKT  L    +R L+ + +    +L +T T  A AEM  R+LE    I TA    
Sbjct: 12  ASAGSGKTFTLAVHYIRQLIEDPYAYRRILAVTFTNKATAEMKERILEQLYGIATA-DEG 70

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           SD  L  EI K   K   +   S AR  L  I+      +++TI +F +++M+    E  
Sbjct: 71  SDGYLK-EIQKTSAKSVEEIRES-AREALRHIIHDYSRFRIETIDSFFQSVMRNLARELE 128

Query: 153 ITSHFAI 159
           + ++ +I
Sbjct: 129 LGANLSI 135


>gi|119475194|ref|ZP_01615547.1| DNA helicase II [marine gamma proteobacterium HTCC2143]
 gi|119451397|gb|EAW32630.1| DNA helicase II [marine gamma proteobacterium HTCC2143]
          Length = 725

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 33/136 (24%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ A    P ++L +T T  AA EM  R+           D
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLIQAEGLSPFSILSVTFTNKAAKEMRARI-----------D 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E+L +  +                      L  P G+ V T H     +++    +A + 
Sbjct: 76  ELLGSSASG---------------------LGAPRGMWVGTFHGIAHRLLKAHWKQAGLP 114

Query: 155 SHFAIADEEQSKKLIE 170
            +F I D +   +L++
Sbjct: 115 QNFQILDSDDQLRLVK 130


>gi|54026969|ref|YP_121211.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
 gi|54018477|dbj|BAD59847.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
          Length = 842

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 46/167 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL A +  P  +L +T T  AAAEM  RV  ++        
Sbjct: 71  IVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAAAEMRERVTGLV-------- 122

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                         P  + M                  V T H+ C  I++ Q  L   +
Sbjct: 123 -------------GPRAATMW-----------------VSTFHSSCVRILRMQAALLPGL 152

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            S+F+I D + S++L+      T+ S  LD + +   A   +  ISN
Sbjct: 153 NSNFSIYDADDSRRLL------TMISRDLDIDTKKYSARLLVTAISN 193


>gi|256831952|ref|YP_003160679.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
 gi|256685483|gb|ACV08376.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
          Length = 1103

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 32/190 (16%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPS 63
           S ++ ++ +DL   T  +Q +   P  S  V A AGSGKT  +  RV+  L+AN    P 
Sbjct: 7   SARDIAQLLDLPHPTVEQQAIIEAPLESMLVIAGAGSGKTETMSARVV-WLIANQIIAPE 65

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT T+ AA E++ R+   +     ++  + S  I           D +  RH   T
Sbjct: 66  RVLGLTFTRKAAGELTERIRARLAHLDRVAPGLTSRRI-----------DTNNDRH---T 111

Query: 124 ILETPGGLK------VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             +TP  L       + T +++  ++         +T H      E   +L+ EA    +
Sbjct: 112 TADTPPALSALARPTISTYNSYAASL---------VTEHGLRIGREPGARLLTEASIWAM 162

Query: 178 ASIMLDNNEE 187
            S ++D+ +E
Sbjct: 163 VSDIVDHWQE 172


>gi|160933076|ref|ZP_02080465.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753]
 gi|156868150|gb|EDO61522.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753]
          Length = 740

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 39/139 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L+ R+  ++  + A P  +L +T T  AA E+  R+  ++          
Sbjct: 30  AGAGSGKTTVLINRIAYIIDQSLAKPWQILAITFTNKAAGELKERLTAMLG--------- 80

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                        +T G +   T H+ C  I+++       +SH
Sbjct: 81  -----------------------------DTGGDVWAATFHSTCARILRRDGDRIGYSSH 111

Query: 157 FAIADEEQSKKLIEEAKKS 175
           F + D + SK+L+++ +K+
Sbjct: 112 FTVYDTDDSKRLVKDCQKA 130


>gi|197336488|ref|YP_002157503.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
 gi|197315191|gb|ACH64639.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
          Length = 762

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 35/53 (66%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          ++A AG+GKT +L +R+ + +  + +P +++ +T TK AA EM  RV  ++ A
Sbjct: 27 ITAGAGAGKTAVLTKRIAKAIYHSGNPESVVAITFTKDAANEMKERVNNLVGA 79


>gi|314982168|gb|EFT26261.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA3]
 gi|315090399|gb|EFT62375.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA4]
          Length = 810

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T  
Sbjct: 44  DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100

Query: 74  AAAEMSHRVLEII 86
           AAAEM  RV++++
Sbjct: 101 AAAEMKARVVDLV 113


>gi|300870871|ref|YP_003785742.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
 gi|300688570|gb|ADK31241.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
          Length = 660

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 15/111 (13%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE---------IITA 88
           A AGSGKT ++ +R+  L+     PS +L +T T  AA EM  R+           +I+ 
Sbjct: 21  AGAGSGKTRVITERIAYLIKNGIDPSNILAVTFTNKAANEMRERIASLLKEKPKQLVIST 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIH 137
           +      +L  +I K+ G K N S    S +R L+  IL     +KV T++
Sbjct: 81  FHSFCVRVLKLDIDKL-GYKKNFSIYSSSDSRTLIRNILRE---VKVNTLN 127


>gi|282855099|ref|ZP_06264431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139]
 gi|282581687|gb|EFB87072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139]
          Length = 810

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T  
Sbjct: 44  DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100

Query: 74  AAAEMSHRVLEII 86
           AAAEM  RV++++
Sbjct: 101 AAAEMKARVVDLV 113


>gi|167816120|ref|ZP_02447800.1| putative helicase [Burkholderia pseudomallei 91]
          Length = 703

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQL A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|91762855|ref|ZP_01264820.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718657|gb|EAS85307.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 40/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
           +SE ++ ++  + E +L  D      + A AGSGKT +L  R+  ++    A P+ +L +
Sbjct: 3   NSEYLNNLNNAQKEAVLYLDG--PLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM +RV  I+ +                                     E  
Sbjct: 61  TFTNKAAKEMQNRVSSILNS-------------------------------------EAI 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G   + T H+ C  ++++    A +TS+F I D +   +LI+   K+
Sbjct: 84  GLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQVRLIKNICKA 130


>gi|329894799|ref|ZP_08270599.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC3088]
 gi|328922693|gb|EGG30027.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC3088]
          Length = 715

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 45/195 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLT 69
           +E +D ++  + E  +A++P  +A V A AGSGKT +LV R+  L+ A    P +LL +T
Sbjct: 4   TELLDGLNPAQRE-AVAAEPG-NALVLAGAGSGKTRVLVHRIAWLIRAEGFSPQSLLAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R   ++   +H                                      
Sbjct: 62  FTNKAAKEMRGRTESMLGLSTH-------------------------------------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G  V T H     +++    EA +  +F I D +   +L+    K  +  + LD+     
Sbjct: 84  GFWVGTFHGLAHRLLKAHWREAGLQQNFQILDSDDQLRLV----KRIVKELGLDDGRWPP 139

Query: 190 KAFYEILEISNDEDI 204
           K     +    DE +
Sbjct: 140 KQIQGFVNAQKDEGL 154


>gi|314964915|gb|EFT09014.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA2]
 gi|315103904|gb|EFT75880.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA2]
 gi|327325604|gb|EGE67403.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL103PA1]
          Length = 810

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T  
Sbjct: 44  DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100

Query: 74  AAAEMSHRVLEII 86
           AAAEM  RV++++
Sbjct: 101 AAAEMKARVVDLV 113


>gi|257068093|ref|YP_003154348.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810]
 gi|256558911|gb|ACU84758.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810]
          Length = 932

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 44/168 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL +  A P  +L +T T  AAAEM  RV E++   +    
Sbjct: 139 IVAGAGSGKTRVLTRRIAHLLHSREALPGEILAITFTNKAAAEMRERVGELVGPVAR--- 195

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I+++    A + 
Sbjct: 196 -----------------------------------SMWVSTFHSACVRILRRDAAAAGLK 220

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF-YEILEISND 201
           S F I D   S +LI    K     + LD  +   +A    I  + ND
Sbjct: 221 SSFTIYDSADSLRLITTIAK----DLQLDTKKHAPRALASRISSLKND 264


>gi|88607848|ref|YP_504873.1| ATP-dependent DNA helicase UvrD [Anaplasma phagocytophilum HZ]
 gi|88598911|gb|ABD44381.1| ATP-dependent DNA helicase, UvrD/Rep family [Anaplasma
           phagocytophilum HZ]
          Length = 788

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 114 MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
           +++AR+L   I   P  LKVQT+H FC++++  FP EA I+++F + +  +S
Sbjct: 25  INRARNLFFRI---PNILKVQTVHGFCKSLISSFPSEAGISANFEVRELSES 73


>gi|71082723|ref|YP_265442.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061836|gb|AAZ20839.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 40/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
           +SE ++ ++  + E +L  D      + A AGSGKT +L  R+  ++    A P+ +L +
Sbjct: 3   NSEYLNNLNNAQKEAVLYLDG--PLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM +RV  I+ +                                     E  
Sbjct: 61  TFTNKAAKEMQNRVSSILNS-------------------------------------EAI 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G   + T H+ C  ++++    A +TS+F I D +   +LI+   K+
Sbjct: 84  GLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQVRLIKNICKA 130


>gi|298524440|ref|ZP_07011849.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|298494234|gb|EFI29528.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A]
          Length = 695

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|50843216|ref|YP_056443.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202]
 gi|50840818|gb|AAT83485.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202]
 gi|315106181|gb|EFT78157.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA1]
          Length = 810

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T  
Sbjct: 44  DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100

Query: 74  AAAEMSHRVLEII 86
           AAAEM  RV++++
Sbjct: 101 AAAEMKARVVDLV 113


>gi|33593011|ref|NP_880655.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33563386|emb|CAE42260.1| probable ATP-dependent DNA helicase [Bordetella pertussis Tohama
          I]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT+ L  RV  L+L  A P  +L LT ++ AA EM  RV  ++
Sbjct: 41 VIAGAGSGKTNTLAHRVAHLILHGADPQRMLLLTFSRRAAQEMERRVGGVL 91


>gi|330993524|ref|ZP_08317459.1| putative DNA helicase II-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329759554|gb|EGG76063.1| putative DNA helicase II-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 737

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 40/159 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D +++   EQ  A + T     V A AG+GKT +L  R   +LL+  A P+ +L +T T 
Sbjct: 12  DYLNRLNPEQRDAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPNQILAVTFTN 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                                       E   GL 
Sbjct: 72  KAAREMRERVSALLG--------------------------------------EPAEGLW 93

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           + T HA C  ++++      +TS F I D +   +L+++
Sbjct: 94  LGTFHALCARMLRRHAEHVGLTSSFTILDTDDQLRLLKQ 132


>gi|315093785|gb|EFT65761.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL060PA1]
          Length = 810

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T  
Sbjct: 44  DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100

Query: 74  AAAEMSHRVLEII 86
           AAAEM  RV++++
Sbjct: 101 AAAEMKARVVDLV 113


>gi|225174502|ref|ZP_03728501.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
 gi|225170287|gb|EEG79082.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
          Length = 1069

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 20/171 (11%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79
           ++ Q + +  T +  V A AGSGKT  LVQR+  L+         +  +T T+ AA E+ 
Sbjct: 10  QARQAIKTRLTETFLVEAGAGSGKTTSLVQRMTALISTGQCQMENMAAVTFTRKAAGELR 69

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R  E                  K++ +  + +D +  +  L T L       + TIH+F
Sbjct: 70  ERFQE------------------KLEKEYQSTTDPT-TKQTLETALSQLDRAFIGTIHSF 110

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           C  ++++ P+EA ++  F   +  + K L + A +  L  +     + LK+
Sbjct: 111 CSRLLRERPVEAGMSPDFTEIEGLEEKILAQTAWEEYLLEVRFTQPQLLKQ 161


>gi|210629805|ref|ZP_03296129.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279]
 gi|210160798|gb|EEA91769.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279]
          Length = 660

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 40/159 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ID+++  + E +L ++      V A AGSGKT +L  R+ R++      P  +L +T T 
Sbjct: 111 IDILNPAQREAVLTTE--GPLLVLAGAGSGKTRVLTFRIARMIGDLGIRPWQILAITFTN 168

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+       + L D  +                                G+ 
Sbjct: 169 KAAAEMRERL------GAMLPDGGMR-------------------------------GMW 191

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           V T HA C  I+++       T  F I D++ S++++ E
Sbjct: 192 VCTFHAMCVRILREDADLLGYTGQFTIYDDDDSRRMVRE 230


>gi|92119222|ref|YP_578951.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91802116|gb|ABE64491.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis
          X14]
          Length = 689

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT+ L  RV  L++  A P  +L +T ++ AA+EM+ RV  I
Sbjct: 34 VIAGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAASEMTRRVERI 83


>gi|257094702|ref|YP_003168343.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
          str. UW-1]
 gi|257047226|gb|ACV36414.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
          str. UW-1]
          Length = 704

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          +R+  + A AGSGKT  L  RV  L+   A P  +L LT ++ AA+EM+ RV  I+
Sbjct: 44 SRALLIIAGAGSGKTSTLAHRVAHLVAQGADPGRILLLTFSRRAASEMTRRVERIL 99


>gi|33600795|ref|NP_888355.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33568395|emb|CAE32307.1| probable ATP-dependent DNA helicase [Bordetella bronchiseptica
          RB50]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT+ L  RV  L+L  A P  +L LT ++ AA EM  RV  ++
Sbjct: 41 VIAGAGSGKTNTLAHRVAHLILHGADPQRMLLLTFSRRAAQEMERRVGGVL 91


>gi|149194062|ref|ZP_01871160.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2]
 gi|149136015|gb|EDM24493.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2]
          Length = 677

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
          SE +D + +    Q  A+     A  + A AGSGKT  L  R+  LL     P+  L LT
Sbjct: 13 SEKMDFLEELNEAQKKAATHIDGALLILAGAGSGKTKTLTSRLAYLLSLGIDPANTLTLT 72

Query: 70 HTKAAAAEMSHRVLEII 86
           T  AA+EM  R L +I
Sbjct: 73 FTNKAASEMRERALSLI 89


>gi|114565925|ref|YP_753079.1| superfamily I DNA/RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336860|gb|ABI67708.1| ATP-dependent DNA helicase PcrA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 696

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L +R++ L+     P  ++ +T T  AA EM  RV             
Sbjct: 25  VLAGAGSGKTRVLTRRIVHLVKQGIPPHRIMAITFTNKAAQEMRSRV------------- 71

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                     I++L       +QT H+ C  I++    E     
Sbjct: 72  --------------------------ISMLPDFNSQWIQTFHSTCNRILRMDIQELGFDK 105

Query: 156 HFAIADEEQSKKLIE 170
           +F+I D+ ++K LI+
Sbjct: 106 YFSIIDDTEAKSLIK 120


>gi|119896636|ref|YP_931849.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
 gi|119669049|emb|CAL92962.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
          Length = 700

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT+ L  RV  L+   A P  +L LT ++ AA EM  RV  I+
Sbjct: 45 VIAGAGSGKTNTLAHRVAHLIANGADPGRILLLTFSRRAADEMGRRVQRIL 95


>gi|109898077|ref|YP_661332.1| exodeoxyribonuclease V, beta subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700358|gb|ABG40278.1| DNA helicase/exodeoxyribonuclease V, beta subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 1320

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 8/147 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP---STLLCLTHTKAAAAEMSHRVLEII 86
           T ++ + A+AG+GKT+ +V   LRLLL +   P     +L +T T AA AE+  R+ + +
Sbjct: 12  TGASLIEASAGTGKTYTIVNLYLRLLLGDECTPLSVDKILVVTFTNAATAELKQRIRQRL 71

Query: 87  T-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
             A+      + S + T+   ++ +  ++   R LL+ I +      V TIH FC+ ++ 
Sbjct: 72  QRAYLDFYAGVSSDDFTQYLIERSDNIELDCHR-LLLAIKQMDDA-AVYTIHGFCQRMLS 129

Query: 146 QFPLEAN-ITSHFAIADEEQSKKLIEE 171
               E+  +     + DE Q  KL  E
Sbjct: 130 LHAFESGAMYEQSLVLDESQWLKLAVE 156


>gi|314924241|gb|EFS88072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL001PA1]
          Length = 810

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T  
Sbjct: 44  DLNEPQRDAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100

Query: 74  AAAEMSHRVLEII 86
           AAAEM  RV++++
Sbjct: 101 AAAEMKARVVDLV 113


>gi|289573579|ref|ZP_06453806.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           K85]
 gi|289538010|gb|EFD42588.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           K85]
          Length = 694

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|170724287|ref|YP_001751975.1| DNA-dependent helicase II [Pseudomonas putida W619]
 gi|169762290|gb|ACA75606.1| UvrD/REP helicase [Pseudomonas putida W619]
          Length = 729

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  R+ +++        
Sbjct: 30  VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P G+ V T H     +++    EA + 
Sbjct: 84  --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111

Query: 155 SHFAIADEEQSKKLIE 170
            +F I D +  ++L++
Sbjct: 112 QNFQILDSDDQQRLVK 127


>gi|119025711|ref|YP_909556.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765295|dbj|BAF39474.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
           15703]
          Length = 879

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 38/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT +L +R+  LL      S++L +T T  AAAEM  R++ ++         
Sbjct: 32  IGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLVTLVG-------- 83

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +A H+ I+           T H+ C  I+++   E  + S
Sbjct: 84  -------------------PEAEHMWIS-----------TFHSACVRILRRDGKEIGLKS 113

Query: 156 HFAIADEEQSKKLIE 170
            F+I D   S++L++
Sbjct: 114 GFSIYDTADSERLVK 128


>gi|317476247|ref|ZP_07935498.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907658|gb|EFV29361.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 1087

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAW--SHLS 93
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L ++   W   H S
Sbjct: 8   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKEDHAS 67

Query: 94  DEILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           D  L   I +     P  +K    +A   L  +L      +V+TI +F +++M+    E 
Sbjct: 68  DAYLK-RIKEDLASSPLSDKELRRRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLAREL 126

Query: 152 NITSHFAI 159
            ++ +  I
Sbjct: 127 ELSPNLNI 134


>gi|184201466|ref|YP_001855673.1| ATP-dependent DNA helicase PcrA [Kocuria rhizophila DC2201]
 gi|183581696|dbj|BAG30167.1| ATP-dependent DNA helicase UvrD1 [Kocuria rhizophila DC2201]
          Length = 818

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 49/163 (30%)

Query: 23  EQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           EQL+A  ++P R+A         + A AGSGKT +L  R+  LL    A    +L +T T
Sbjct: 34  EQLVAGLNEPQRAAVEHSGAPLLIVAGAGSGKTRVLTHRIAHLLATGRARRGEILAITFT 93

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+ E++                              AR + I+        
Sbjct: 94  NKAAAEMRERIAELVG---------------------------DSARTMWIS-------- 118

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
              T H+ C  I+++      + ++F+I D   S +LI +  K
Sbjct: 119 ---TFHSLCVRILRREAKTLGLNTNFSIYDSADSLRLITQVAK 158


>gi|330443998|ref|YP_004376984.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58]
 gi|328807108|gb|AEB41281.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58]
          Length = 637

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           + P R   V A AG+GKT +++ R+L L+     P  +L +T T  AA E+  R++
Sbjct: 15 VTSPLRPVLVLAGAGAGKTRVVIYRILHLIHQGIAPREILAVTFTNKAAKELKERIM 71


>gi|255020481|ref|ZP_05292546.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC
           51756]
 gi|254970091|gb|EET27588.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC
           51756]
          Length = 1185

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 12/129 (9%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPST-------LLCLTHTKAAAAEMSHRV--- 82
           SA + A+AG+GKT+ +    LRLLL +  P+T       +L +T T+AA  E+  R+   
Sbjct: 15  SALIEASAGTGKTYTIATLYLRLLLGHGEPATPPRQPREILVMTFTRAATEELRERIALR 74

Query: 83  -LEIITAWSHLSDEILS-AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
             E ITA    +    S A + ++    P+ +  + A   L     +     + TI A+C
Sbjct: 75  LYETITALREGAPPASSDALLQRLLRDYPDPATRAAAIIRLENAFNSVDEASIHTIDAWC 134

Query: 141 EAIMQQFPL 149
             ++++  L
Sbjct: 135 HRVLREHAL 143


>gi|256830236|ref|YP_003158964.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
 gi|256579412|gb|ACU90548.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
          Length = 724

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT  +V R+ RL+ +   P+ +L LT T+ A++EM HR
Sbjct: 26 VIAGAGSGKTRTVVYRLARLVESGVSPAEILLLTFTRKASSEMLHR 71


>gi|313680462|ref|YP_004058201.1| uvrd/rep helicase [Oceanithermus profundus DSM 14977]
 gi|313153177|gb|ADR37028.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 917

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A+AG+GKT+ L  R     LA   P  L  +T T++AAAE+  R+ E + A +    +  
Sbjct: 6   ASAGTGKTYALTSR-FTAALAEHPPYRLAAVTFTRSAAAELKARLRERLLAIAAGRFQPS 64

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
            AE        P ++ + +A  L   +L    G  V TIH F   +++Q  L   +   F
Sbjct: 65  GAE------DVPPEAVVRRAGALATEVL----GATVTTIHGFFAELLRQNALALGLEPDF 114

Query: 158 AIADEEQSKKLIEEAKKS 175
              D  +S+++  E  ++
Sbjct: 115 LRIDASESQQIFAEEARA 132


>gi|239995580|ref|ZP_04716104.1| DNA helicase II [Alteromonas macleodii ATCC 27126]
          Length = 723

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 45/174 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +A V A AGSGKT +LV R+  L+ + N  P ++L +T
Sbjct: 4   SRLLDELNDKQREAVAA--PLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+                            +S M ++ H          
Sbjct: 62  FTNKAAKEMRGRI----------------------------ESLMGRSLH---------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            + + T H     +++    EAN+  +F I D +   +LI    +  L ++ LD
Sbjct: 84  NMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLI----RRILKAMNLD 133


>gi|125975357|ref|YP_001039267.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC
          27405]
 gi|256005497|ref|ZP_05430459.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM
          2360]
 gi|281419317|ref|ZP_06250332.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20]
 gi|125715582|gb|ABN54074.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC
          27405]
 gi|255990552|gb|EEU00672.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM
          2360]
 gi|281406937|gb|EFB37200.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20]
 gi|316939472|gb|ADU73506.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM
          1313]
          Length = 741

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+   N HP+++L +T T  AA EM  R+  ++
Sbjct: 24 VLAGAGSGKTKVLTHRIAYLIKEKNVHPASILAITFTNKAAREMRERIDRLV 75


>gi|302338886|ref|YP_003804092.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301636071|gb|ADK81498.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 670

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 39/163 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           IDL  +   EQ +A+        + A AGSGKT ++  R+  +L      S++L LT T 
Sbjct: 3   IDLAKELNKEQFIAASTIDGPLLIIAGAGSGKTRMITFRIAHMLEEGIPQSSILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EMS R                   I  + GK+ +                    L 
Sbjct: 63  KAAREMSDR-------------------IRSLTGKRLS-------------------NLT 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T HAF   ++++     +  S+F+I D+     LI+E+ + 
Sbjct: 85  VSTFHAFGVKVLRKSIEYLDYKSNFSIYDQVDKTALIKESARG 127


>gi|302036648|ref|YP_003796970.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
 gi|300604712|emb|CBK41044.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
          Length = 717

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           A V A AGSGKT  LV RV  L+ +   PS +L LT T+ ++ EM  RV  +I + S 
Sbjct: 87  ALVIAGAGSGKTRTLVHRVAYLIDSGVDPSQILLLTFTRKSSEEMLERVGALIGSRSQ 144


>gi|289753005|ref|ZP_06512383.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054]
 gi|289693592|gb|EFD61021.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054]
          Length = 650

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|153006283|ref|YP_001380608.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152029856|gb|ABS27624.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 682

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  RV  LLL    P  +L +T T  AA EM  RV
Sbjct: 33 VLAGAGSGKTRVIAHRVAYLLLQGVEPEQILAVTFTNKAAGEMRERV 79


>gi|303237262|ref|ZP_07323832.1| putative ATP-dependent helicase PcrA [Prevotella disiens
           FB035-09AN]
 gi|302482649|gb|EFL45674.1| putative ATP-dependent helicase PcrA [Prevotella disiens
           FB035-09AN]
          Length = 841

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 13/109 (11%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT----- 87
           ++ V A AGSGKT +L  ++  L++    P  +L LT T  AA EM  R+ ++++     
Sbjct: 30  ASLVVAGAGSGKTRVLTYKIAYLMMCGVLPYRILALTFTNKAAKEMQSRIGQLVSHDDAK 89

Query: 88  -----AWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129
                 +  +   IL AE  K+ G + N +  D S +R L+ TI+++ G
Sbjct: 90  QLYMGTFHSVFSRILRAEADKL-GYERNFTIYDESDSRSLIKTIVKSLG 137


>gi|29839776|ref|NP_828882.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC]
 gi|29834123|gb|AAP04760.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC]
          Length = 1045

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 25/128 (19%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q VLR LL    +H   +L +T T AA  E+  R+          
Sbjct: 18  FLEASAGTGKTFTIEQIVLRALLEGSVSHVENILAVTFTNAATNELKLRI---------- 67

Query: 93  SDEILSAEITKIQG--KKPNKS------DMSKARHLLITI---LETPGGLKVQTIHAFCE 141
             + L   + +I+   + P+KS      D S  + L + +   L T   + + TIH FC 
Sbjct: 68  -QDNLKQALCQIKSVLEDPSKSLPPYLKDTSNVKLLYMQVRNALATIDRMAIFTIHGFCN 126

Query: 142 AIMQQ-FP 148
            ++QQ FP
Sbjct: 127 YVLQQHFP 134


>gi|332139606|ref|YP_004425344.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549628|gb|AEA96346.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype']
          Length = 723

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 41/160 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +A V A AGSGKT +LV R+  L+ + N  P ++L +T
Sbjct: 4   SRLLDELNDKQREAVAA--PLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+                            +S M ++ H          
Sbjct: 62  FTNKAAKEMRGRI----------------------------ESLMGRSLH---------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + + T H     +++    EAN+  +F I D +   +LI
Sbjct: 84  NMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLI 123


>gi|313835931|gb|EFS73645.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA2]
 gi|314927226|gb|EFS91057.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL044PA1]
 gi|314970659|gb|EFT14757.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA3]
 gi|328906126|gb|EGG25901.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. P08]
          Length = 810

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           DL    +   L A  P     V A AGSGKT +L +R+  L+     HP ++L +T T  
Sbjct: 44  DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100

Query: 74  AAAEMSHRVLEII 86
           AAAEM  RV++++
Sbjct: 101 AAAEMKARVVDLV 113


>gi|170756184|ref|YP_001780091.1| recombination helicase AddA [Clostridium botulinum B1 str. Okra]
 gi|251764513|sp|B1IEN0|ADDA_CLOBK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|169121396|gb|ACA45232.1| ATP-dependent nuclease subunit A [Clostridium botulinum B1 str.
           Okra]
          Length = 1279

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 28  SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           +D  R A  + N          +GKT +LVQR++  +L    P     LL +T T AAAA
Sbjct: 7   TDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ + I   S   DE   +++ + Q    NKS+                   + TI
Sbjct: 67  EMRERIGDAI---SKGLDEDPESKVLRKQLTLLNKSN-------------------IMTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           H+FC  +++       I  +F I DE +   + +EA
Sbjct: 105 HSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEA 140


>gi|159468518|ref|XP_001692421.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278134|gb|EDP03899.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 815

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
           TK  Q +  D  R+  + A AG+GKT  L++R+L L+      P  +LC+T T  AAAE+
Sbjct: 133 TKGWQAVTGDLERAQLIIAGAGTGKTTTLIKRILYLIQEKRVPPRHILCITFTNKAAAEV 192

Query: 79  SHRV 82
             R+
Sbjct: 193 RDRL 196


>gi|312869874|ref|ZP_07730014.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3]
 gi|311094614|gb|EFQ52918.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3]
          Length = 1386

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 22/153 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T ++Q   SD  ++  VSA+AGSGKT +LV R + L+    A    +L +T T AAA  M
Sbjct: 7   TPAQQQAISDRDQNIIVSASAGSGKTAVLVNRAVDLIKEGRATVDRMLLVTFTDAAAKNM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++ + +        E+  AE        P   D+   +   + + +      + TIHA
Sbjct: 67  RDKIRQRM-------QEVAQAE--------PRLRDLMNEQVNRLAVAD------ISTIHA 105

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           FC  +++++     +   F +  ++  + L++E
Sbjct: 106 FCLKLIKRYYFLIGLDPQFRLLTDDTERLLLQE 138


>gi|289757034|ref|ZP_06516412.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85]
 gi|289712598|gb|EFD76610.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85]
          Length = 650

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|226228582|ref|YP_002762688.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27]
 gi|226091773|dbj|BAH40218.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27]
          Length = 1210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 24/159 (15%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHP-----STLLCLTHTKAAAAEMSHR 81
           P   + + A+AG+GKT  +   V+RLLL   A   P       +L +T T AA  E+  R
Sbjct: 16  PPGISLIEASAGTGKTFNIAMSVVRLLLEQDAAGQPIVSGLGGILVVTFTNAATEELVTR 75

Query: 82  VLEIIT----AWSHLSDEILSAEITKIQ----GKKPNKSDMSKARHLLITILETPGGLKV 133
           V  ++      WS       ++EI  ++    G++P  +  ++A+  L  +      L V
Sbjct: 76  VRRMLQLAHEVWSGALYAKSNSEIEILRELANGREPWAA--TRAQEALRAL----DALAV 129

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            TIH FC+ ++ +F LE+   + F++   +    LIEEA
Sbjct: 130 FTIHGFCKRVLDEFALESG--APFSMELLDDPTPLIEEA 166


>gi|312602470|ref|YP_004022315.1| exodeoxyribonuclease V subunit beta [Burkholderia rhizoxinica HKI
           454]
 gi|312169784|emb|CBW76796.1| Exodeoxyribonuclease V beta chain (EC 3.1.11.5) [Burkholderia
           rhizoxinica HKI 454]
          Length = 1245

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 8/119 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV----LEIITAWS 90
           + A+AG+GKT  +    LRLLL  +     +L +T TKAA AE+  R+    +++  A +
Sbjct: 22  IEASAGTGKTWNICALYLRLLLEKDLQADQILVVTFTKAATAELHERIRARLMQLEQALA 81

Query: 91  H---LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           H   L D  ++  I ++      ++   +A   +   L       + TIHAFC+  +Q+
Sbjct: 82  HGVALDDPFVTGLIGRLVDGDAPETATQRALKRIRRALHGFDQAAIHTIHAFCQRALQE 140


>gi|215426220|ref|ZP_03424139.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
 gi|289749473|ref|ZP_06508851.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
 gi|289690060|gb|EFD57489.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
          Length = 632

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|54310114|ref|YP_131134.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9]
 gi|46914553|emb|CAG21332.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9]
          Length = 1227

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 26/152 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL + +  T          +L +T T+AA AE+  R+   
Sbjct: 44  IEASAGTGKTFTIASLYLRLLLGHGNAETRHASELTVDQILVVTFTEAATAELRDRIRAR 103

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
               +I       +D +++  +T I+       D   A  +L+          + TIH F
Sbjct: 104 IHDAQIAFRRGFSNDPVIAPLLTAIR-------DHKAAAQILLNAERQMDEAAIYTIHGF 156

Query: 140 CEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169
           C+ ++ Q   E+     + F + DE Q K L+
Sbjct: 157 CQRMLTQNAFESGSRFNNEF-VTDESQLKSLV 187


>gi|313202687|ref|YP_004041344.1| ATP-dependent DNA helicase pcra [Paludibacter propionicigenes
          WB4]
 gi|312442003|gb|ADQ78359.1| ATP-dependent DNA helicase PcrA [Paludibacter propionicigenes
          WB4]
          Length = 769

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          ++ V A AGSGKT +L  ++  LL     PS++L LT T  AA EM  R+  ++
Sbjct: 23 ASLVIAGAGSGKTRVLTYKIAYLLKNGMAPSSILALTFTNKAAREMKERIAAMV 76


>gi|296158274|ref|ZP_06841106.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295891610|gb|EFG71396.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 708

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 33/59 (55%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          P  +  V A AGSGKT+ L  RV  L++  A P  +L LT ++ AA EM  RV  I  A
Sbjct: 37 PPGALLVIAGAGSGKTNTLAHRVANLVVNGADPRRILLLTFSRRAALEMIRRVTRIAGA 95


>gi|199598402|ref|ZP_03211821.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           rhamnosus HN001]
 gi|258508491|ref|YP_003171242.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus GG]
 gi|199590721|gb|EDY98808.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           rhamnosus HN001]
 gi|257148418|emb|CAR87391.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus GG]
 gi|259649801|dbj|BAI41963.1| ATP-dependent exonuclease subunit A [Lactobacillus rhamnosus GG]
          Length = 1236

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 17/153 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
           T S+Q   +       VSA+AGSGKT +LV+R++ ++L  +A  + +L +T T+AA +EM
Sbjct: 5   TPSQQAAINHHGHDMLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATSEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++   +        + L+A        K ++ +    RHL   I       K+ T+ A
Sbjct: 65  RTKIQTALK-------QTLTA--------KRHELNAEDRRHLANQIAMVNAA-KISTLDA 108

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           F   I+Q +    ++   F +  +E  + +++E
Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141


>gi|323479631|gb|ADX79070.1| uvrD/REP helicase family protein [Enterococcus faecalis 62]
          Length = 606

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 64/198 (32%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q +      S  V+A  GSGKT +L QR+ R+L        +L LT +  AA E++
Sbjct: 4   TNSQQEIVDYIDGSLLVTAGPGSGKTRVLTQRIARIL--ELKKGKVLALTFSNKAAEEIT 61

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV                            K  +S   H  I         KV+TIH+F
Sbjct: 62  ERV----------------------------KKQLSVENHERI---------KVETIHSF 84

Query: 140 CEAIM----QQFPLEANIT------------------SHFAIADEE---QSKKLIEEAKK 174
           C  ++     Q  LEA +T                  S   + +++   +  + IEE KK
Sbjct: 85  CLDLVLNRGNQIGLEAGLTVIEDRNDKLEILKRAYFNSKMMLPEDKILHKELRAIEEHKK 144

Query: 175 STLASIMLDNNEELKKAF 192
           + L    ++NN E +  F
Sbjct: 145 NFLYPDNIENNSEFRDIF 162


>gi|322378864|ref|ZP_08053281.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
 gi|321148674|gb|EFX43157.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
          Length = 654

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q  SEQL A   P     V A+AG+GKT  +V R+L LL +   P  +L LT T  A+ E
Sbjct: 3  QLNSEQLQAIKAPLGHNLVIASAGTGKTSTIVGRILHLLTSGIDPRQILLLTFTNKASQE 62

Query: 78 MSHRV 82
          M  R+
Sbjct: 63 MKERL 67


>gi|241668452|ref|ZP_04756030.1| DNA/RNA helicase superfamily I protein [Francisella philomiragia
          subsp. philomiragia ATCC 25015]
 gi|254876985|ref|ZP_05249695.1| DNA and RNA helicase [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254843006|gb|EET21420.1| DNA and RNA helicase [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
          Length = 686

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++++  D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A  + + R+
Sbjct: 8  QKIITHDLDKHALVSAVAGSGKTQTLIARIEYLIDNKVPPNKILVLMYNKSAQLDFAERL 67

Query: 83 LEIITA 88
           ++I A
Sbjct: 68 KKVIKA 73


>gi|254392029|ref|ZP_05007220.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC
           27064]
 gi|294814551|ref|ZP_06773194.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|326442941|ref|ZP_08217675.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705707|gb|EDY51519.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC
           27064]
 gi|294327150|gb|EFG08793.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 825

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM  RV +++   +    
Sbjct: 91  IVAGAGSGKTRVLTHRIAHLLATRGVHPGQILAITFTNKAAGEMKERVEQLVGPRAQ--- 147

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I+++   +   T
Sbjct: 148 -----------------------------------AMWVLTFHSACVRILRRESKKLGFT 172

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   SK+L+
Sbjct: 173 SSFSIYDAADSKRLM 187


>gi|293401242|ref|ZP_06645386.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305368|gb|EFE46613.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 759

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT ++  R+  L+     +P+ +L +T T  AA EM  RV            
Sbjct: 24  IIAGAGSGKTRVVTTRIAYLIEEMQVYPNKILAITFTNKAAKEMKERV------------ 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E +  E+ K                           +++ TIH+FC  ++++  LE    
Sbjct: 72  EGMLGEVAK--------------------------AVQISTIHSFCVRLLREDILEVGYP 105

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +F I D +  K ++ +A K
Sbjct: 106 RNFTILDSDDQKSILRDAYK 125


>gi|91784748|ref|YP_559954.1| putative DNA helicase [Burkholderia xenovorans LB400]
 gi|91688702|gb|ABE31902.1| Putative DNA helicase [Burkholderia xenovorans LB400]
          Length = 708

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 33/59 (55%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          P  +  V A AGSGKT+ L  RV  L++  A P  +L LT ++ AA EM  RV  I  A
Sbjct: 37 PPGALLVIAGAGSGKTNTLAHRVANLVVNGADPRRILLLTFSRRAALEMIRRVTRIAGA 95


>gi|302187828|ref|ZP_07264501.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae 642]
          Length = 727

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM HR+ +++
Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLM 80


>gi|168177782|ref|ZP_02612446.1| recombination helicase AddA [Clostridium botulinum NCTC 2916]
 gi|182671018|gb|EDT82992.1| recombination helicase AddA [Clostridium botulinum NCTC 2916]
          Length = 1279

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LVQR++  +L    P     LL +T T AAAAEM  R+ + I   S   DE   ++
Sbjct: 31  KTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKGLDEDPESK 87

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           + + Q    NKS+                   + TIH+FC  +++       I  +F I 
Sbjct: 88  VLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNLHTMEIDPNFRIC 128

Query: 161 DEEQSKKLIEEA 172
           DE +   + +EA
Sbjct: 129 DETEGILMKQEA 140


>gi|167627899|ref|YP_001678399.1| DNA/RNA helicase superfamily I protein [Francisella philomiragia
          subsp. philomiragia ATCC 25017]
 gi|167597900|gb|ABZ87898.1| DNA and RNA helicase superfamily I protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
          Length = 686

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++++  D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A  + + R+
Sbjct: 8  QKIITHDLDKHALVSAVAGSGKTQTLIARIEYLIDNKVPPNKILVLMYNKSAQLDFAERL 67

Query: 83 LEIITA 88
           ++I A
Sbjct: 68 KKVIKA 73


>gi|62184654|ref|YP_219439.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3]
 gi|62147721|emb|CAH63465.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3]
          Length = 1045

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLE-IITAWSH 91
           ++ A+AG+GKT  + Q VLR LL    +H   +L +T T AA  E+  R+ E +  A + 
Sbjct: 18  FLEASAGTGKTFTIEQIVLRALLEGSVSHVENILIVTFTNAATNELKLRISENLKQAGAQ 77

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-F 147
           L   I   E    Q   P        + L + +   L T   + + TIH FC  ++QQ F
Sbjct: 78  LKSAITDPE----QPLPPYLHHPCDVKLLYMQVRNALATIDRMAIFTIHGFCNYVLQQHF 133

Query: 148 P 148
           P
Sbjct: 134 P 134


>gi|124265321|ref|YP_001019325.1| putative ATP-dependent DNA helicase rep protein [Methylibium
          petroleiphilum PM1]
 gi|124258096|gb|ABM93090.1| putative ATP-dependent DNA helicase rep protein [Methylibium
          petroleiphilum PM1]
          Length = 693

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++  ++ RLL A   PS +  +T T  AAAEM  R   ++ A
Sbjct: 13 VLAGAGSGKTRVITHKIARLLEAGLAPSQIAAITFTNKAAAEMRERAKALVGA 65


>gi|309789677|ref|ZP_07684258.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
 gi|308228413|gb|EFO82060.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
          Length = 641

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
          P     V A AGSGKT +L  R+  L+   A PS +L LT T  AA EM  R+ + + A 
Sbjct: 18 PVGPVLVRAGAGSGKTRVLTLRIAHLISIGAKPSQILALTFTNKAAREMRERLRKQLGAG 77

Query: 90 S 90
          +
Sbjct: 78 A 78


>gi|221369980|ref|YP_002521076.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221163032|gb|ACM04003.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 679

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           + P     V A AGSGKT  L  RV  LL+  A P  +L +T ++ AAAE++ RV  I
Sbjct: 21 GTQPAPPLLVIAGAGSGKTSTLAHRVAHLLVKGADPRRILLMTFSRRAAAELTRRVERI 79


>gi|330998558|ref|ZP_08322378.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329568156|gb|EGG49975.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 819

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 41/149 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+  ++    H    
Sbjct: 30  VIAGAGSGKTRVLTYKIAYLLEQGYKPWNILALTFTNKAAREMKERIARLV---GH---- 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                         E   GL + T H+    I+++   E   +S
Sbjct: 83  ------------------------------ELAAGLWMGTFHSVFSRILRKEADEIGFSS 112

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           HF I D+  S+ LI    K+ +  + LD+
Sbjct: 113 HFTIYDQADSRNLI----KTVIREMGLDD 137


>gi|320535504|ref|ZP_08035607.1| UvrD/REP helicase [Treponema phagedenis F0421]
 gi|320147643|gb|EFW39156.1| UvrD/REP helicase [Treponema phagedenis F0421]
          Length = 1138

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKA 73
          D I      Q  A+    +A +SA AGSGKT +L  R + L++    P   ++ LT TK 
Sbjct: 3  DFIESLNQNQKAAALIDVNAVISAGAGSGKTRVLTARYIHLVINKKIPIEKIVALTFTKK 62

Query: 74 AAAEMSHRVL-EIITAWS 90
          AAAEM  R+  E++T  S
Sbjct: 63 AAAEMYQRIYRELLTCDS 80


>gi|289761084|ref|ZP_06520462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM
           1503]
 gi|289708590|gb|EFD72606.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM
           1503]
          Length = 702

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|206890945|ref|YP_002248960.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742883|gb|ACI21940.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 1015

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           + A+AGSGKT  L +R +  LL++  P+     +L +T +  A+ EM  R++E +    +
Sbjct: 15  LKASAGSGKTTALTERFVYFLLSDDIPNNSLKNILAITFSNNASYEMKDRIIEWLKNL-Y 73

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             +E     ++++    P +  + KA  +L  IL      +V+TI +F  ++ +   ++ 
Sbjct: 74  CKEENSLNRLSELLSLSPEELSL-KAGQILDEILNNYSDFQVKTIDSFMTSVFKASAIDF 132

Query: 152 NITSHFAIADEEQS 165
           +    F I    QS
Sbjct: 133 DYNPDFEILMNNQS 146


>gi|303242289|ref|ZP_07328776.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
 gi|302590199|gb|EFL59960.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
          Length = 706

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 61/183 (33%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           A V A  GSGKT ++  R+  L+L     P  +L LT  KAA AEM +R           
Sbjct: 29  ALVLAGPGSGKTTVITARIACLILECGVKPENILTLTFNKAARAEMEYR----------- 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                     KI G     +D+              G +   T+H+FC+ I++ +     
Sbjct: 78  --------FNKIYG-----TDIG-------------GKVHFATMHSFCKRIVRDY----- 106

Query: 153 ITSHFAIADEEQSK--KLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--NDEDIETLI 208
                   +  Q K  K+IE  +K      + +N  ++ +  Y+ +  S  ND+++E LI
Sbjct: 107 --------ENRQGKWLKMIEGEEK------IEENKRKIIRGLYQQINNSKINDDELENLI 152

Query: 209 SDI 211
           ++I
Sbjct: 153 NEI 155


>gi|301057782|ref|ZP_07198851.1| UvrD/REP helicase [delta proteobacterium NaphS2]
 gi|300448093|gb|EFK11789.1| UvrD/REP helicase [delta proteobacterium NaphS2]
          Length = 719

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 30/50 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT  LV RV RL+     P  +L LT T+ +A EM +R  E+
Sbjct: 28 VIAGAGSGKTRTLVYRVARLVETGVPPEAILLLTFTRKSAQEMLNRASEL 77


>gi|294660411|ref|NP_853162.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)]
 gi|284812070|gb|AAP56730.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)]
 gi|284930644|gb|ADC30583.1| DNA helicase II [Mycoplasma gallisepticum str. R(high)]
          Length = 751

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 48/172 (27%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +V A AG+GKT +L  R+  L+     P   +L +T T  AA EM HR+           
Sbjct: 24  FVVAGAGTGKTKVLTSRIAYLIEHFKIPEYKILAITFTNKAAKEMQHRL----------- 72

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN- 152
           +++L+ E T++                             +T H FC  ++++   E N 
Sbjct: 73  EKLLNKEKTQVS---------------------------FRTFHGFCAQVLRE---EVNN 102

Query: 153 ---ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
              +   F I DE    KLIE+  KS           + KK   +++ I ND
Sbjct: 103 VDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDFKKN--KVMSIIND 152


>gi|154487471|ref|ZP_02028878.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
           L2-32]
 gi|154083989|gb|EDN83034.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
           L2-32]
          Length = 896

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 38/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT +L +R+  LL      S++L +T T  AAAEM  R++ ++         
Sbjct: 49  IGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLVTLVG-------- 100

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +A H+ I+           T H+ C  I+++   E  + S
Sbjct: 101 -------------------PEAEHMWIS-----------TFHSACVRILRRDGKEIGLKS 130

Query: 156 HFAIADEEQSKKLIE 170
            F+I D   S++L++
Sbjct: 131 GFSIYDTADSERLVK 145


>gi|325066848|ref|ZP_08125521.1| ATP-dependent DNA helicase PcrA [Actinomyces oris K20]
          Length = 649

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 43/135 (31%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  L+    A P  +L +T T  AAAEM  RV              
Sbjct: 21  AGAGSGKTRVLTHRIAHLIATGRARPGEILAITFTNKAAAEMRERV-------------- 66

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEANIT 154
                                     T L  P G +  V T H+ C  I+++    A + 
Sbjct: 67  --------------------------TALVGPAGERMWVSTFHSACVRILRREHEAAGLR 100

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   S +LI
Sbjct: 101 STFSIYDAADSTRLI 115


>gi|78045388|ref|YP_361638.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78033892|emb|CAJ19891.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 1103

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ T  ++  A  P R++ V A  G+GKT  L+ R+  LL   A P+ LL LT +  AA 
Sbjct: 198 LTPTDEQRDAARSPVRTSLVVAGPGTGKTATLLMRIEHLLANGAKPAELLVLTFSNRAAR 257

Query: 77  EMSHRV 82
           E+  R+
Sbjct: 258 ELVDRL 263


>gi|115524887|ref|YP_781798.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115518834|gb|ABJ06818.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
          Length = 700

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 31/50 (62%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT+ L  RV  LL+  A P  LL +T ++ AA+EM  RV  I
Sbjct: 48 VIAGAGSGKTNTLAHRVAHLLVHGADPRRLLLMTFSRRAASEMIRRVERI 97


>gi|149908513|ref|ZP_01897175.1| DNA helicase II [Moritella sp. PE36]
 gi|149808347|gb|EDM68284.1| DNA helicase II [Moritella sp. PE36]
          Length = 722

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  S  + A AGSGKT +LV R+  L+ +    P +LL +T T  AAAEM  RV      
Sbjct: 21  PQSSMLILAGAGSGKTRVLVHRLAWLMQVEQCSPYSLLAVTFTNKAAAEMRGRV------ 74

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                D++L       +G++                     G+ + T H     +++   
Sbjct: 75  -----DKLL-------EGRQQ--------------------GMWIGTFHGIAHRLLRAHH 102

Query: 149 LEANITSHFAIADEEQSKKLIE 170
           L+A + + F I D +   +L++
Sbjct: 103 LDAGLPAEFQIIDSDDQLRLLK 124


>gi|315125768|ref|YP_004067771.1| UvrD family helicase [Pseudoalteromonas sp. SM9913]
 gi|315014282|gb|ADT67620.1| UvrD family helicase [Pseudoalteromonas sp. SM9913]
          Length = 638

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          +IS + S+Q +     +SA  + A+AGSGKT +L +R+ R +L N     +L LT T  A
Sbjct: 1  MISLSPSQQEIVEFDIKSAIQILASAGSGKTRVLTERI-RYILNNTKKDKVLALTFTNKA 59

Query: 75 AAEMSHRVLEII 86
          A EM  R+ + +
Sbjct: 60 AQEMQERLADFV 71


>gi|118475031|ref|YP_892129.1| UvrD/REP helicase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414257|gb|ABK82677.1| UvrD/REP helicase [Campylobacter fetus subsp. fetus 82-40]
          Length = 679

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ  A+  PT    V A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3  LSKLNREQYTAATAPTGYNLVIASAGTGKTSTIVARIAHLLNLGMKPERILLLTFTNKAA 62

Query: 76 AEMSHRVLEIITA 88
          +EM  R+    +A
Sbjct: 63 SEMIDRLSNYFSA 75


>gi|323702799|ref|ZP_08114458.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM
          574]
 gi|323532187|gb|EGB22067.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM
          574]
          Length = 721

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+ ++L     P  +L +T T  AAAEM  RV  ++
Sbjct: 24 VLAGAGSGKTRVLTHRIAKILEQGVPPYNILAITFTNKAAAEMKSRVENLV 74


>gi|116072446|ref|ZP_01469713.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus
           sp. BL107]
 gi|116064968|gb|EAU70727.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus
           sp. BL107]
          Length = 1217

 Score = 45.8 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM----SHRVLEIITAWS 90
           + A+AG+GKT  L    LRL+   A+P  TLL +T+T+AAA E+      R+ + +    
Sbjct: 23  LEASAGTGKTFALAHLTLRLITEAAYPLETLLVVTYTEAAAEELRSRIGQRLQQALVGLE 82

Query: 91  HLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            L +E   +    +      +    SD       L+  LE      + TIH FC   +++
Sbjct: 83  QLENETFPSAPDPVMAAWWEQCMASSDRRIRIRRLLVALEQLDRADIATIHGFCRRSLRR 142

Query: 147 FPLE 150
             L+
Sbjct: 143 LALD 146


>gi|74317324|ref|YP_315064.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC
          25259]
 gi|74056819|gb|AAZ97259.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC
          25259]
          Length = 702

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT++L  RV  L+   A P+ +L LT ++ AA EM  RV  I+
Sbjct: 47 VIAGAGSGKTNVLAHRVAHLVAHGADPAAILLLTFSRRAADEMVRRVERIL 97


>gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
 gi|88815160|gb|EAR25019.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
          Length = 799

 Score = 45.8 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          S  + A AGSGKT +L +R+  LL +  A PS +L +T T  AAAEM  RV  I+
Sbjct: 41 SLLIVAGAGSGKTSVLTRRIAGLLRSQEAWPSQILAITFTNKAAAEMRERVAAIV 95


>gi|161525045|ref|YP_001580057.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|189350212|ref|YP_001945840.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Burkholderia
          multivorans ATCC 17616]
 gi|160342474|gb|ABX15560.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|189334234|dbj|BAG43304.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Burkholderia
          multivorans ATCC 17616]
          Length = 786

 Score = 45.8 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|33240542|ref|NP_875484.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238070|gb|AAQ00137.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 1256

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 16/149 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84
           + A+AG+GKT+ L   VLRLL     P + +L ++ TKA A+E+  R+          LE
Sbjct: 20  LEASAGTGKTYSLAHLVLRLLTEKGCPINKILVISFTKATASEIKARISSRLVLALKGLE 79

Query: 85  IITAWS--HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             T  S    +D++++  +   + K  ++S   +   LLI  LE      + TIH FC  
Sbjct: 80  SYTPKSLASCTDQVMNEWL---ESKVIDESTRLQWASLLIKALENIDSADITTIHGFCSR 136

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
            +++  ++           EE +K+LI E
Sbjct: 137 NLKREAIDVGNNIETEALSEEDNKELILE 165


>gi|120536959|ref|YP_957017.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
 gi|120326793|gb|ABM21102.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
          Length = 715

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          +S T+ ++ +A+    +  V A AGSGKT  LVQRV RL+  N +P +++ +T ++ AA 
Sbjct: 4  VSLTQQQEKIANHVDGALIVLAGAGSGKTATLVQRVGRLIDQNINPRSIMLVTFSRKAAK 63

Query: 77 EMSHRV 82
          E+  R+
Sbjct: 64 EIKVRL 69


>gi|295677083|ref|YP_003605607.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295436926|gb|ADG16096.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 795

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL+S    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 13 DLLSNLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTN 72

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 73 KAAREMMARL 82


>gi|221214933|ref|ZP_03587901.1| DNA helicase II [Burkholderia multivorans CGD1]
 gi|221165160|gb|EED97638.1| DNA helicase II [Burkholderia multivorans CGD1]
          Length = 786

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|209519276|ref|ZP_03268077.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209500288|gb|EEA00343.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 797

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL+S    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 13 DLLSNLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTN 72

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 73 KAAREMMARL 82


>gi|188995178|ref|YP_001929430.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188594858|dbj|BAG33833.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 765

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A V A AGSGKT +LV ++L L+ +   P+ L+ LT T  AA EM  RV
Sbjct: 24 ALVIAGAGSGKTRVLVYKLLHLIRSGYDPARLMALTFTNKAAKEMKERV 72


>gi|189424132|ref|YP_001951309.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189420391|gb|ACD94789.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 1048

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A  G+GKT IL  R+  +LL+ +A P ++LCLT+T A    M +R+L+ I
Sbjct: 32 VIAGPGTGKTEILAARIANILLSTDATPESILCLTYTDAGTVAMRNRLLQFI 83


>gi|262193706|ref|YP_003264915.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262077053|gb|ACY13022.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 688

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  R++RLL +   P  +  LT T  AA EM  RV
Sbjct: 26 VLAGAGSGKTRVITYRIVRLLRSGIPPQAIAALTFTNRAAEEMRERV 72


>gi|188585469|ref|YP_001917014.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350156|gb|ACB84426.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 1161

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 23/155 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  LV R++  +++  +    ++ +T T+ AAAE+  R        + L +
Sbjct: 27  VEAGAGSGKTRSLVDRMVAQVVSGRYRVDEIVAITFTRKAAAELRERF------QNRLEE 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           E               + D S      I I L    G  + TIH+F   ++++ P+EA +
Sbjct: 81  EY--------------QKDYSPEVKDNIEIALRNIEGTFLGTIHSFAANLLRERPVEAGL 126

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
              F   DE +S  + EE  +  L  + L N E+L
Sbjct: 127 DPEFQELDELESAIMEEEVFEEYLLYVRL-NREDL 160


>gi|325978250|ref|YP_004287966.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325178178|emb|CBZ48222.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 609

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 42/157 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           Q  A D   +  V A  GSGKT +L  + + LL    A P  L CLT+++ AA E + R+
Sbjct: 19  QKAAFDSQSNTVVLAGPGSGKTTVLTLKAMHLLNGVIAEPRGLACLTYSREAAREFTERL 78

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-E 141
            E+                            + +  ++ +            T+H+FC  
Sbjct: 79  KEL---------------------------GLVRGNNIFLG-----------TVHSFCLT 100

Query: 142 AIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176
            I+ +F      NI +   IA E+Q  KL E AKK+ 
Sbjct: 101 EILGKFCDVYSLNIPTPIKIASEKQRAKLFEIAKKNV 137


>gi|306831339|ref|ZP_07464499.1| UvrD/REP helicase subfamily [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426575|gb|EFM29687.1| UvrD/REP helicase subfamily [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 609

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 42/157 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           Q  A D   +  V A  GSGKT +L  + + LL    A P  L CLT+++ AA E + R+
Sbjct: 19  QKAAFDSQSNTVVLAGPGSGKTTVLTLKAMHLLNGVIAEPRGLACLTYSREAAREFTERL 78

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-E 141
            E+                            + +  ++ +            T+H+FC  
Sbjct: 79  KEL---------------------------GLVRGNNIFLG-----------TVHSFCLT 100

Query: 142 AIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176
            I+ +F      NI +   IA E+Q  KL E AKK+ 
Sbjct: 101 EILGKFCDVYSLNIPTPIKIASEKQRAKLFEIAKKNV 137


>gi|221197704|ref|ZP_03570750.1| DNA helicase II [Burkholderia multivorans CGD2M]
 gi|221204738|ref|ZP_03577755.1| DNA helicase II [Burkholderia multivorans CGD2]
 gi|221175595|gb|EEE08025.1| DNA helicase II [Burkholderia multivorans CGD2]
 gi|221181636|gb|EEE14037.1| DNA helicase II [Burkholderia multivorans CGD2M]
          Length = 786

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|260909824|ref|ZP_05916516.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
 gi|260636055|gb|EEX54053.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
          Length = 1627

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 23   EQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHR 81
            +Q++    TR   V+A  GSGKT +LV ++   LLL +     LL LT ++AAA E   R
Sbjct: 1079 KQIITDKDTRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQR 1138

Query: 82   VLEIITAWSHL 92
            +++++   +H 
Sbjct: 1139 LMKLVGNAAHF 1149


>gi|261414687|ref|YP_003248370.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
          S85]
 gi|261371143|gb|ACX73888.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
          S85]
 gi|302325603|gb|ADL24804.1| ATP-dependent DNA helicase, UvrD/REP family [Fibrobacter
          succinogenes subsp. succinogenes S85]
          Length = 803

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          S+   EQL A + T     V A AGSGKT  L  R L L+      P+ +LC+T T  AA
Sbjct: 19 SRLDKEQLEAVETTEGYVRVVAGAGSGKTRTLTHRYLYLVKEMGISPANILCVTFTNKAA 78

Query: 76 AEMSHRVLEII 86
          AEM  R+  I+
Sbjct: 79 AEMKKRIRSIL 89


>gi|168181307|ref|ZP_02615971.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf]
 gi|237793761|ref|YP_002861313.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str.
           657]
 gi|259710033|sp|C3L047|ADDA_CLOB6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|182675388|gb|EDT87349.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf]
 gi|229262225|gb|ACQ53258.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str.
           657]
          Length = 1279

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 28  SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           +D  R A  + N          +GKT +LVQR++  +L    P     LL +T T AAAA
Sbjct: 7   TDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ + I   S   DE   +++ + Q    NKS+                   + TI
Sbjct: 67  EMRERIGDAI---SKGLDEDPESKVLRKQLTLLNKSN-------------------IMTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           H+FC  +++       I  +F I DE +   + +EA
Sbjct: 105 HSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEA 140


>gi|163839113|ref|YP_001623518.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
 gi|162952589|gb|ABY22104.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
          Length = 797

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL    AHP  +L +T T  AAAEM  R+  +I
Sbjct: 51  IVAGAGSGKTRVLSHRIAYLLATGRAHPGQILAITFTNKAAAEMRERIAALI 102


>gi|45656320|ref|YP_000406.1| DNA helicase II [Leptospira interrogans serovar Copenhageni str.
          Fiocruz L1-130]
 gi|45599554|gb|AAS69043.1| DNA helicase II [Leptospira interrogans serovar Copenhageni str.
          Fiocruz L1-130]
          Length = 433

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75
          +  + ++Q + ++ TR   V A AGSGKT  +V  + R+L+ N  P  ++L LT ++ AA
Sbjct: 5  VQYSSAQQKVINENTRFVQVVAAAGSGKTSTMVGIIERILVENLFPKESVLVLTFSRKAA 64

Query: 76 AEMSHRVLEI 85
           E+S+R+ ++
Sbjct: 65 IEISNRIQKV 74


>gi|329124082|ref|ZP_08252629.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus
          aegyptius ATCC 11116]
 gi|327467507|gb|EGF13005.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus
          aegyptius ATCC 11116]
          Length = 727

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5  SELLDGLNDKQREAVAA--PLGNRLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 63 FTNKAAAEMRHRI 75


>gi|323491621|ref|ZP_08096800.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546]
 gi|323314197|gb|EGA67282.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546]
          Length = 1205

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +  P T          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGSPETKHQVPLTVDQILVVTFTEAATAELRDRIRAR 82

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D ++   + ++       SD  +A  +L+          V TIH F
Sbjct: 83  IHDARLAFARGQSGDPVIQPLLEEV-------SDHKQAADILLQAERQMDEAAVYTIHGF 135

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 136 CQRMLTQNAFESG 148


>gi|226947672|ref|YP_002802763.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str.
           Kyoto]
 gi|254802143|sp|C1FSA8|ADDA_CLOBJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|226844297|gb|ACO86963.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str.
           Kyoto]
          Length = 1279

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 28  SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           +D  R A  + N          +GKT +LVQR++  +L    P     LL +T T AAAA
Sbjct: 7   TDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ + I   S   DE   +++ + Q    NKS+                   + TI
Sbjct: 67  EMRERIGDAI---SKGLDEDPESKVLRKQLTLLNKSN-------------------IMTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           H+FC  +++       I  +F I DE +   + +EA
Sbjct: 105 HSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEA 140


>gi|134295512|ref|YP_001119247.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4]
 gi|134138669|gb|ABO54412.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4]
          Length = 787

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|126664590|ref|ZP_01735574.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17]
 gi|126630916|gb|EBA01530.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17]
          Length = 721

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIIT 87
          V A AGSGKT +LV R+   +  N  P+T LL +T T  AA EM HR+ E++ 
Sbjct: 27 VLAGAGSGKTRVLVHRMAWQMQVNRVPATGLLAVTFTNKAAKEMRHRIEEMMN 79


>gi|254252587|ref|ZP_04945905.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
 gi|124895196|gb|EAY69076.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
          Length = 786

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|325971393|ref|YP_004247584.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324026631|gb|ADY13390.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 650

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 39/164 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++Q +   ++   P R+  V+A AGSGKT  ++ R    +        LL LT T   A 
Sbjct: 3   LNQQQMAAVVYDGPKRNILVNAGAGSGKTRTIIARAAHRITQGTQADRLLVLTFTNRVAQ 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ HR          L+ E+ SA      G+                       +++ T 
Sbjct: 63  ELRHR----------LAHEVGSA------GES----------------------VQMGTF 84

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           HAFC  +M   P    I S  +I D +    L+   +KS + ++
Sbjct: 85  HAFCLKVMSSLPKSFAI-SGLSIIDSDDQDNLMGMVRKSLIKNL 127


>gi|313665602|ref|YP_004047473.1| ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50]
 gi|312949842|gb|ADR24438.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50]
          Length = 722

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 47/172 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P R   + A AGSGKT ++  ++  L+   N  PS +L +T T  AA EM  RVL+I   
Sbjct: 24  PVR---IIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKEMKERVLQI--- 77

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                N S             ++P    + T H++C  +++   
Sbjct: 78  --------------------TNNS------------FKSPF---ISTFHSWCSKVLRIDG 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILE 197
               +   F I D +  K++I+ A K   ++I L+ N++    KK  Y+I E
Sbjct: 103 KHIGLEDKFLIIDSDDQKRIIKSALKE--SNIELNENDKKTFDKKILYKIKE 152


>gi|288905265|ref|YP_003430487.1| ATP-dependent DNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731991|emb|CBI13556.1| putative ATP-dependent DNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 609

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 42/157 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           Q  A D   +  V A  GSGKT +L  + + LL    A P  L CLT+++ AA E + R+
Sbjct: 19  QKAAFDSQSNTVVLAGPGSGKTTVLTLKAMHLLNGVIAEPRGLACLTYSREAAREFTERL 78

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-E 141
            E+                            + +  ++ +            T+H+FC  
Sbjct: 79  KEL---------------------------GLVRGNNIFLG-----------TVHSFCLT 100

Query: 142 AIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176
            I+ +F      NI +   IA E+Q  KL E AKK+ 
Sbjct: 101 EILGKFCDVYSLNIPTPIKIASEKQRAKLFEIAKKNV 137


>gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
 gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
          Length = 862

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 40/184 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
           + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM 
Sbjct: 5   REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  ++ +                    P K+                  ++V T H+F
Sbjct: 65  GRIQSLVGS--------------------PAKA------------------VEVSTFHSF 86

Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  I+QQ       + +   I DEE  K+L E  +   L  +   N   + K +  + E 
Sbjct: 87  CFFILQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANVIAMVKEYRSLYEF 146

Query: 199 SNDE 202
            +D+
Sbjct: 147 YSDD 150


>gi|255037536|ref|YP_003088157.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
 gi|254950292|gb|ACT94992.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
          Length = 755

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
          H++ +  +++ + E +L  +      + A AGSGKT +L  R+ RL+     P  +L LT
Sbjct: 3  HNDYLSTLNEPQREAVLHGNG--PLMIIAGAGSGKTRVLTYRIARLIETGVDPFRILSLT 60

Query: 70 HTKAAAAEMSHRV 82
           T  A+ EM  R+
Sbjct: 61 FTNKASGEMRSRI 73


>gi|157736816|ref|YP_001489499.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri RM4018]
 gi|157698670|gb|ABV66830.1| ATP-dependent DNA helicase, UvrD/Rep family [Arcobacter butzleri
          RM4018]
          Length = 681

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S    EQL A+   +    + A+AG+GKT  +V R+  LL +  +P  +L LT T  AA
Sbjct: 3  LSNLNQEQLQAATCHQGFNLIIASAGTGKTSTIVGRIAYLLNSGINPKEILLLTFTNKAA 62

Query: 76 AEMSHRV 82
          AEM +RV
Sbjct: 63 AEMINRV 69


>gi|163750873|ref|ZP_02158107.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99]
 gi|161329431|gb|EDQ00426.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99]
          Length = 1249

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 18/144 (12%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVL-EII 86
           S  + A+AG+GKT+ +    +RLLL +     L C     +T T AA  E+  R+  +I 
Sbjct: 33  SRLIEASAGTGKTYTIAGLYVRLLLGHGIVKPLTCQQILVVTFTNAATGELRDRIRNKIQ 92

Query: 87  TAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
            A+ H       DE+L++    +    P +S+   A   L   L++     + TIH FC+
Sbjct: 93  LAYRHFIGIDTGDELLAS----LHSATP-ESERPLALKRLDLALKSLDEASIFTIHGFCQ 147

Query: 142 AIMQQFPLEANI--TSHFAIADEE 163
            I+     E+++   S F + D E
Sbjct: 148 RILADMAFESSLLFESEFTLDDSE 171


>gi|325269817|ref|ZP_08136427.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM
          16608]
 gi|324987790|gb|EGC19763.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM
          16608]
          Length = 843

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 10/80 (12%)

Query: 19 QTKSEQLLAS--DPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
          Q + E+LL++  +  R A         V A AGSGKT +L  ++  LL     P  +L L
Sbjct: 4  QEREEELLSALNESQRKAVEYCAGPSLVIAGAGSGKTRVLTYKIAYLLEKGLKPWNILAL 63

Query: 69 THTKAAAAEMSHRVLEIITA 88
          T T  AA EM  R+ +I TA
Sbjct: 64 TFTNKAAKEMKERIAQITTA 83


>gi|298252946|ref|ZP_06976740.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis 5-1]
 gi|297533310|gb|EFH72194.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis 5-1]
          Length = 1401

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 24/116 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT+ + +RV+ L+     P ++L LT T  AA+E+  RV + ++   H    
Sbjct: 33  IVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAASELLARVAQAVS--QH---- 86

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             S+EI K+   G   + S   K               +V T  AF ++I++Q+ L
Sbjct: 87  --SSEINKLINNGNSASSSGFLKP--------------EVMTYDAFFQSIVRQYGL 126


>gi|284931444|gb|ADC31382.1| DNA helicase II [Mycoplasma gallisepticum str. F]
          Length = 751

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 48/172 (27%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +V A AG+GKT +L  R+  L+     P   +L +T T  AA EM HR+           
Sbjct: 24  FVVAGAGTGKTKVLTSRIAYLIEHFKIPEYKILAITFTNKAAKEMQHRL----------- 72

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN- 152
           +++L  E T++                             +T H FC  ++++   E N 
Sbjct: 73  EKLLDKEKTQVS---------------------------FRTFHGFCAQVLRE---EVNN 102

Query: 153 ---ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
              +   F I DE    KLIE+  KS           + KK   +++ I ND
Sbjct: 103 VDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDFKKN--KVMSIIND 152


>gi|282898588|ref|ZP_06306576.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii
          CS-505]
 gi|281196456|gb|EFA71365.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii
          CS-505]
          Length = 777

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  L  R+  L+L N  HP  +L +T T  AA EM  R+
Sbjct: 30 VVAGAGSGKTRALTYRIANLILQNRVHPENILAVTFTNKAAREMKDRI 77


>gi|254423127|ref|ZP_05036845.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335]
 gi|196190616|gb|EDX85580.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335]
          Length = 784

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 19/158 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+L +   P  +L +T T  AA EM  R+ ++      L  
Sbjct: 28  VVAGAGSGKTRALTYRIANLILNHRVDPENILAVTFTNKAAREMKERIEKLFAEQESL-- 85

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ------QFP 148
               A   K     P +  +    ++  T ++   GL V T HA C  I++      Q  
Sbjct: 86  ----ARHGKPFHMLPEREQIQLRSYIYKTFIK---GLWVGTFHALCARILRYDIEKYQSA 138

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                T  F+I DE  ++ L+   K   ++ + LD+ +
Sbjct: 139 DGQRWTKSFSIFDESDAQSLV---KSIVISGLNLDDRK 173


>gi|241663638|ref|YP_002981998.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240865665|gb|ACS63326.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 786

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          DL++    EQ  A + P  SA + A AGSGKT +L  R+  L+  A   PS +L +T T 
Sbjct: 3  DLLANLNPEQRAAITLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM+ R+
Sbjct: 63 KAAKEMTARL 72


>gi|237806835|ref|YP_002891275.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187]
 gi|237499096|gb|ACQ91689.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187]
          Length = 1175

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 11/140 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT+ +    LRLLL +               +L +T T+AA AE+  R+L+ 
Sbjct: 18  IEASAGTGKTYTIAGLYLRLLLGHGSGDAAFGTPLPVDRILVVTFTEAATAELRQRILKA 77

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I   +  + E+  ++   IQ       D   A   L+T         + TIH FC+ ++ 
Sbjct: 78  IRD-TRRALEVGHSDDQLIQNLISECPDQKLALRQLLTAERQMDEAAIYTIHGFCQRMLT 136

Query: 146 QFPLEANITSHFAIADEEQS 165
           Q   E+          EEQ+
Sbjct: 137 QNAFESGSLFDNEFLTEEQT 156


>gi|187777525|ref|ZP_02993998.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC
           15579]
 gi|187774453|gb|EDU38255.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC
           15579]
          Length = 1279

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 28  SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
           +D  R A  + N          +GKT +LVQR++  +L    P     LL +T T AAAA
Sbjct: 7   TDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ +   A S   DE   +++ + Q    NKS+                   + TI
Sbjct: 67  EMRERIGD---AISKGLDEDPESKVLRKQLTLLNKSN-------------------IMTI 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           H+FC  +++       I  +F I DE +   + +EA
Sbjct: 105 HSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEA 140


>gi|187929519|ref|YP_001900006.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|309781705|ref|ZP_07676438.1| DNA helicase II [Ralstonia sp. 5_7_47FAA]
 gi|187726409|gb|ACD27574.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|308919346|gb|EFP65010.1| DNA helicase II [Ralstonia sp. 5_7_47FAA]
          Length = 786

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          DL++    EQ  A + P  SA + A AGSGKT +L  R+  L+  A   PS +L +T T 
Sbjct: 3  DLLANLNPEQRAAITLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM+ R+
Sbjct: 63 KAAKEMTARL 72


>gi|298208568|ref|YP_003716747.1| putative helicase [Croceibacter atlanticus HTCC2559]
 gi|83848491|gb|EAP86360.1| putative helicase [Croceibacter atlanticus HTCC2559]
          Length = 773

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 30/53 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT +L  R+  L+     P  +L LT T  AA EM  R+ EI+ A
Sbjct: 25 VIAGAGSGKTRVLTMRIAHLMKNGVDPFNILSLTFTNKAAKEMKKRISEIVGA 77


>gi|327402801|ref|YP_004343639.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
 gi|327318309|gb|AEA42801.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
          Length = 771

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT +L  R+  ++     P  +L LT T  AA EM+ R+  II +
Sbjct: 24 VIAGAGSGKTRVLTMRIAFMIDRGVDPFNILALTFTNKAAKEMTERIGSIIGS 76


>gi|288802442|ref|ZP_06407881.1| putative UvrD/REP helicase domain protein [Prevotella
           melaninogenica D18]
 gi|288334970|gb|EFC73406.1| putative UvrD/REP helicase domain protein [Prevotella
           melaninogenica D18]
          Length = 1099

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    + L++ N      +L +T T  A  EM  R+L  +   +H L D 
Sbjct: 10  ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKTRILSQLYGIAHKLPDS 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E    +   P  +    A   L  +       +VQTI AF +++++    E N+T+
Sbjct: 70  QAYYEQVLRKTGFPELTIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 129

Query: 156 HFAIA--DEEQSKKLIEE 171
           +  I   DE+   + ++E
Sbjct: 130 NLRIDLNDEQVEAQAVDE 147


>gi|283783598|ref|YP_003374352.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
 gi|283441008|gb|ADB13474.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
          Length = 1397

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 24/116 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT+ + +RV+ L+     P ++L LT T  AA+E+  RV + ++   H    
Sbjct: 33  IVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAASELLARVAQAVS--QH---- 86

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             S+EI K+   G   + S   K               +V T  AF ++I++Q+ L
Sbjct: 87  --SSEINKLINNGNSASSSGFLKP--------------EVMTYDAFFQSIVRQYGL 126


>gi|225351915|ref|ZP_03742938.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157162|gb|EEG70501.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 905

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 38/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT +L +R+  LL      S++L +T T  AAAEM  R+  ++         
Sbjct: 52  IGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLASLVG-------- 103

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +A H+ I+           T H+ C  I+++   E  +TS
Sbjct: 104 -------------------PEAEHMWIS-----------TFHSACVRILRRDGKEIGLTS 133

Query: 156 HFAIADEEQSKKLIE 170
            F+I D    ++L++
Sbjct: 134 GFSIYDTADCERLVK 148


>gi|119953412|ref|YP_945621.1| exodeoxyribonuclease V beta chain [Borrelia turicatae 91E135]
 gi|119862183|gb|AAX17951.1| exodeoxyribonuclease V beta chain [Borrelia turicatae 91E135]
          Length = 1147

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 28/125 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93
           + A+AG+GKT+IL   +  LL+   + PS +L LT TK A  EM  R+L+ I  A+    
Sbjct: 16  IEASAGTGKTYILENTITNLLINKTYSPSEILVLTFTKKATEEMHIRILKSIENAY---- 71

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                      Q  + +KS        L  I E    + + TI+ F    +  F +E   
Sbjct: 72  -----------QNSQTDKS--------LKKIYEQSNKIFISTINKFALHSLNNFQIE--- 109

Query: 154 TSHFA 158
           T HF 
Sbjct: 110 TEHFV 114


>gi|149914018|ref|ZP_01902550.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
 gi|149812302|gb|EDM72133.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
          Length = 1703

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
            Q ++E +D +  +  EQ++  D  ++   V A  GSGKT +LV RV  L+ +    P+ +
Sbjct: 1078 QSYAEIVDNLGNSTQEQIVRDDREKTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGI 1137

Query: 66   LCLTHTKAAAAEMSHRVLEII 86
            L L + + AAAE+  R+  +I
Sbjct: 1138 LVLAYNRHAAAEIRERLRLLI 1158


>gi|297243751|ref|ZP_06927681.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis AMD]
 gi|296888172|gb|EFH26914.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis AMD]
          Length = 1417

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 24/116 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT+ + +RV+ L+     P ++L LT T  AA+E+  RV + ++   H    
Sbjct: 33  IVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAASELLARVAQAVS--QH---- 86

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             S+EI K+   G   + S   K               +V T  AF ++I++Q+ L
Sbjct: 87  --SSEINKLINNGNSASSSGFLKP--------------EVMTYDAFFQSIVRQYGL 126


>gi|254362319|ref|ZP_04978431.1| DNA helicase II [Mannheimia haemolytica PHL213]
 gi|153093899|gb|EDN74827.1| DNA helicase II [Mannheimia haemolytica PHL213]
          Length = 732

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7  LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73 AAAAEMSHRV 82
           AAAEM HR+
Sbjct: 65 KAAAEMRHRI 74


>gi|325522724|gb|EGD01222.1| UvrD/REP helicase [Burkholderia sp. TJI49]
          Length = 272

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|24213188|ref|NP_710669.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|24193905|gb|AAN47687.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
          Length = 433

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75
          +  + ++Q + ++ TR   V A AGSGKT  +V  + R+L+ N  P  ++L LT ++ AA
Sbjct: 5  VQYSSAQQKVINENTRFVQVVAAAGSGKTSTMVGIIERILVENLFPKESVLVLTFSRKAA 64

Query: 76 AEMSHRVLEI 85
           E+S+R+ ++
Sbjct: 65 IEISNRIQKV 74


>gi|261496496|ref|ZP_05992876.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307699|gb|EEY09022.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 732

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 7  LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64

Query: 73 AAAAEMSHRV 82
           AAAEM HR+
Sbjct: 65 KAAAEMRHRI 74


>gi|261493261|ref|ZP_05989788.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311111|gb|EEY12287.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 734

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T 
Sbjct: 9  LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 66

Query: 73 AAAAEMSHRV 82
           AAAEM HR+
Sbjct: 67 KAAAEMRHRI 76


>gi|186475566|ref|YP_001857036.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184192025|gb|ACC69990.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 750

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           P+ +  V A AGSGKT+ L  RV  L++    P  +L LT ++ AA EM+ RV  I
Sbjct: 69  PSGALLVIAGAGSGKTNTLAHRVANLVVKGVDPRRILLLTFSRRAALEMTRRVTRI 124


>gi|160879499|ref|YP_001558467.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
 gi|160428165|gb|ABX41728.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
          Length = 807

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 43/170 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+   N +P  ++ LT T  AA EM  RV +I+        
Sbjct: 24  ILAGAGSGKTRVLTHRIAYLIEERNVNPYQIMALTFTNKAAKEMRERVDKIVG------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               AE                              + V T H+ C  I+++F       
Sbjct: 77  --YGAE-----------------------------NIWVSTFHSTCVRILRRFIETLGYD 105

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
            +F I D +  K LI E     L  + +D  +  ++ F   +  + DE I
Sbjct: 106 RNFTIYDTDDQKTLIRE----VLKFLQIDTKQTKERVFLSAISSAKDEGI 151


>gi|332181236|gb|AEE16924.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 710

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 39/163 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +++L  +   EQ  A   T  A  + A AGSGKT ++  R+  +L      S +L LT T
Sbjct: 2   SVNLRDELNQEQYEAVTTTEGALLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV E      H              GKK                      L
Sbjct: 62  NKAAREMEERVKE------H-------------TGKKLQN-------------------L 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            V T HAF   I++Q   +     +F+I DE    +LI+E  +
Sbjct: 84  TVSTFHAFGVKILRQDIEQLGWRPNFSIYDETDRNQLIKETGR 126


>gi|229844857|ref|ZP_04464995.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1]
 gi|229812238|gb|EEP47929.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1]
          Length = 726

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4  SELLDGLNDKQREAVAA--PIGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 62 FTNKAAAEMRHRI 74


>gi|152990757|ref|YP_001356479.1| ATP-dependent DNA helicase UvrD [Nitratiruptor sp. SB155-2]
 gi|151422618|dbj|BAF70122.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp.
          SB155-2]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 17 ISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          +S    EQL A+   +S +  V A+AG+GKT  +V R+  LL     P  +L LT T  A
Sbjct: 3  LSTLNPEQLAAA-TAKSGYNLVIASAGTGKTSTIVARIAYLLQQGIEPKKILLLTFTNKA 61

Query: 75 AAEMSHRV 82
          AAEM  RV
Sbjct: 62 AAEMIARV 69


>gi|113461072|ref|YP_719140.1| DNA helicase/exodeoxyribonuclease V subunit beta [Haemophilus
           somnus 129PT]
 gi|112823115|gb|ABI25204.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Haemophilus
           somnus 129PT]
          Length = 1216

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 18/144 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLE--- 84
           + A+AG+GKTH +V   +RLLL     +         +L +T+T+ A  E+  R+ E   
Sbjct: 36  IEASAGTGKTHSIVSLYIRLLLQAGENNFSQALEVDQILVVTYTEMATQELKQRIRERIY 95

Query: 85  -----IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +I    H +  +L  +   +Q   P   D+  A + L           V TIH+F
Sbjct: 96  QTKQALIQYQQHQNKTLLEDQF--LQELLPYIKDIDLAVYRLTLAERNLDISAVSTIHSF 153

Query: 140 CEAIMQQFPLEANITSHFAIADEE 163
           C  ++ Q+   + +  +  +  +E
Sbjct: 154 CRRVLMQYAFNSGVHFNMELVSDE 177


>gi|170717649|ref|YP_001784727.1| exodeoxyribonuclease V subunit beta [Haemophilus somnus 2336]
 gi|168825778|gb|ACA31149.1| exodeoxyribonuclease V, beta subunit [Haemophilus somnus 2336]
          Length = 1216

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 18/144 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLE--- 84
           + A+AG+GKTH +V   +RLLL     +         +L +T+T+ A  E+  R+ E   
Sbjct: 36  IEASAGTGKTHSIVSLYIRLLLQAGENNFSQALEVDQILVVTYTEMATQELKQRIRERIY 95

Query: 85  -----IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +I    H +  +L  +   +Q   P   D+  A + L           V TIH+F
Sbjct: 96  QTKQALIQYQQHQNKTLLEDQF--LQELLPYIKDIDLAVYRLTLAERNLDISAVSTIHSF 153

Query: 140 CEAIMQQFPLEANITSHFAIADEE 163
           C  ++ Q+   + +  +  +  +E
Sbjct: 154 CRRVLMQYAFNSGVHFNMELVSDE 177


>gi|289446520|ref|ZP_06436264.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289419478|gb|EFD16679.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CPHL_A]
          Length = 702

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|283782302|ref|YP_003373057.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283440755|gb|ADB19197.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 669

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 23 EQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          EQ  A D  R    V A AGSGKT ++  R+  L+     P  +L +T T  AAAEM HR
Sbjct: 8  EQQEAVDTLRGPLLVLAGAGSGKTRVVTFRMANLIKHGTQPDRILAVTFTNKAAAEMQHR 67

Query: 82 VLEIITAWSHLSDEI 96
          +  ++   S +  ++
Sbjct: 68 LSALLKTKSKIKPQV 82


>gi|148951|gb|AAC36867.1| DNA helicase II [Haemophilus influenzae]
 gi|739972|prf||2004269A DNA helicase II
          Length = 727

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 63 FTNKAAAEMRHRI 75


>gi|116669378|ref|YP_830311.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
 gi|116609487|gb|ABK02211.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
          Length = 830

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+    AH   +L +T T  AAAEM  R+            
Sbjct: 79  IVAGAGSGKTRVLSNRIAYLIATRRAHHGEILAITFTNKAAAEMRERI------------ 126

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E L     KI                          + + T H+ C  I++Q      + 
Sbjct: 127 EALVGGRAKI--------------------------MWISTFHSSCVRILRQEAANVGLK 160

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S+F+I D   S +L+ +  KS
Sbjct: 161 SNFSIYDSADSLRLVTQVSKS 181


>gi|322385777|ref|ZP_08059421.1| exonuclease RexA [Streptococcus cristatus ATCC 51100]
 gi|321270515|gb|EFX53431.1| exonuclease RexA [Streptococcus cristatus ATCC 51100]
          Length = 1223

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 19/124 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT+++VQR++  +L     S L   T T  AA E+  R+           ++
Sbjct: 45  VSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFTVKAAGELKERL-----------EK 93

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +S  I + Q       D    +HL   + E      + T+ AF + ++ ++     +  
Sbjct: 94  EMSLVIKETQ-------DQELRQHLAQQLAEIANA-DIGTMDAFTQKVVNKYGYLLGLAP 145

Query: 156 HFAI 159
           HF I
Sbjct: 146 HFRI 149


>gi|187735189|ref|YP_001877301.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425241|gb|ACD04520.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 669

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 65/172 (37%), Gaps = 45/172 (26%)

Query: 14  IDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ID  +    EQ  A  S+P   A V A AGSGKT  L  RV  LL     P  +L LT T
Sbjct: 20  IDYRTALNEEQYAAVSSEPG-PALVIAGAGSGKTRTLTYRVAWLLDHGTDPWNILLLTFT 78

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM+ RV  +I                          D+S+              L
Sbjct: 79  NKAAREMTERVRSLIPL------------------------DLSR--------------L 100

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H+    I++Q       T  F I D +  K +I    KS + S+ LD
Sbjct: 101 WSGTFHSIANRILRQHAEYLGYTPAFTIMDSDDRKSMI----KSVVKSLKLD 148


>gi|114766742|ref|ZP_01445680.1| ATP-dependent DNA helicase [Pelagibaca bermudensis HTCC2601]
 gi|114541061|gb|EAU44117.1| ATP-dependent DNA helicase [Roseovarius sp. HTCC2601]
          Length = 680

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT+ L  RV  LL+  A P  +L +T ++ AA E++ RV  I
Sbjct: 33 VIAGAGSGKTNTLAHRVAHLLVNGADPQRILLMTFSRRAATELTRRVARI 82


>gi|308234985|ref|ZP_07665722.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14018]
 gi|311115083|ref|YP_003986304.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019]
 gi|310946577|gb|ADP39281.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019]
          Length = 1390

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSD 94
           + A AGSGKT+ + +RV+ L+ +   P ++L LT T  AAAE+  RV  E+  + ++ + 
Sbjct: 35  IVAGAGSGKTYTMTRRVIHLIKSKVPPESILGLTFTNKAAAELLSRVSAEVSASGANGAK 94

Query: 95  EILSAEI 101
             L  E+
Sbjct: 95  SFLKPEV 101


>gi|182684250|ref|YP_001835997.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae
           CGSP14]
 gi|221232029|ref|YP_002511181.1| putative DNA helicase II, UvrD [Streptococcus pneumoniae ATCC
           700669]
 gi|182629584|gb|ACB90532.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae
           CGSP14]
 gi|220674489|emb|CAR69050.1| putative DNA helicase II, UvrD [Streptococcus pneumoniae ATCC
           700669]
          Length = 1334

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 41/111 (36%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A  G+GKT IL +RV  +L  N H S+  ++CLT+T+A A+EM  R+ ++I       
Sbjct: 34  VIAGPGTGKTQILSRRVANIL-TNYHTSSEEIVCLTYTEAGASEMLDRLEKLIGE----- 87

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                      +G+K                      ++V TIHAFC  ++
Sbjct: 88  -----------EGRK----------------------VRVSTIHAFCSELI 105


>gi|78776939|ref|YP_393254.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
 gi|78497479|gb|ABB44019.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
          Length = 692

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 17 ISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ +A+        + A+AG+GKT  +V R+  LL     PS +L LT T  +A
Sbjct: 3  LSRLNEEQYVAATSKELQNLIIASAGTGKTSTIVGRIAHLLENGVEPSQILLLTFTNKSA 62

Query: 76 AEMSHRVLEII 86
          AEM  RV E  
Sbjct: 63 AEMVSRVAEFF 73


>gi|127514313|ref|YP_001095510.1| DNA-dependent helicase II [Shewanella loihica PV-4]
 gi|126639608|gb|ABO25251.1| ATP-dependent DNA helicase UvrD [Shewanella loihica PV-4]
          Length = 726

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4   SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV                        +K + S+M              G
Sbjct: 62  FTNKAAAEMRERV------------------------EKVSGSNM--------------G 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  +
Sbjct: 84  RMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQLRLI----KRILKSLNLDEKQ 136


>gi|260494743|ref|ZP_05814873.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33]
 gi|260197905|gb|EEW95422.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33]
          Length = 737

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 39/155 (25%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV E+
Sbjct: 17  ASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERVEEL 76

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +                          D++KA               + T H+F   +++
Sbjct: 77  V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 98

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            +  E    S+F I D +  K++++   K    SI
Sbjct: 99  MYGKEVGYNSNFTIYDTDDQKRIVKAILKGQNLSI 133


>gi|183221021|ref|YP_001839017.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911115|ref|YP_001962670.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775791|gb|ABZ94092.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779443|gb|ABZ97741.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 727

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 40/156 (25%)

Query: 22  SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
           SEQ LA +       + A AGSGKT ++  R+  L+L  N +P+ +L +T T  AA EM 
Sbjct: 8   SEQKLAVESVDGPLLILAGAGSGKTRVITYRIANLILNHNVYPNQILAVTFTNKAAEEMR 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R   ++   S+                +P                       V+T H+ 
Sbjct: 68  SRCRNLLPDGSY----------------EPF----------------------VRTFHSL 89

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           C  ++++      + S+F + D +  + LI+E  KS
Sbjct: 90  CLYLLRREGKVLGLGSNFTVYDSDMQESLIKEILKS 125


>gi|189423552|ref|YP_001950729.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189419811|gb|ACD94209.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 736

 Score = 45.8 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 41/163 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
           +DL++   + Q  A   T     + A AGSGKT ++  R++ L+  +   P  +L +T T
Sbjct: 1   MDLLAHLNTPQKQAVLHTEGPLLILAGAGSGKTRVITHRIVHLIREHGIRPWNILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM+ RV                                   RHLL +  +TP   
Sbjct: 61  NKAAKEMAERV-----------------------------------RHLLGS-HDTP--- 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + T HA C  I++Q   +    S FAI D++ S++L+++  K
Sbjct: 82  LIATFHATCGRILRQDIHQLGYESSFAIYDDKDSERLLKDLIK 124


>gi|309811913|ref|ZP_07705685.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185]
 gi|308434125|gb|EFP57985.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185]
          Length = 897

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  L+ A  A P  +L +T T  AAAEM  RV +++
Sbjct: 125 IVAGAGSGKTRVLTHRIAYLMAARGAQPGQILAITFTNKAAAEMRERVEQLV 176


>gi|254459347|ref|ZP_05072768.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
 gi|207083960|gb|EDZ61251.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
          Length = 694

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 17 ISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ +A+    +   + A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3  LSRLNQEQYVAATSNDAQNLIIASAGTGKTSTIVGRIGHLLGNGVKPQEILLLTFTNKAA 62

Query: 76 AEMSHRVLE 84
          AEM  RV E
Sbjct: 63 AEMVERVAE 71


>gi|149179307|ref|ZP_01857868.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148841848|gb|EDL56250.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 693

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL  Q   EQ  A+   T    + A AG+GKT  L  RV  L+     PS +L LT ++ 
Sbjct: 10  DLFKQLNPEQQAAACHDTGPLLIIAGAGTGKTTTLSHRVAYLIAQGIDPSRILLLTFSRR 69

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
           AA EM  RV  ++ A S   +   SA    I G
Sbjct: 70  AANEMVRRVDALLRAMSAGRENTASARSRSIWG 102


>gi|312144162|ref|YP_003995608.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus']
 gi|311904813|gb|ADQ15254.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus']
          Length = 715

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L +R+  L+      P  +L +T T  AA EM +RV +++          
Sbjct: 29  AGAGSGKTRVLTRRIAYLIKQRGVSPYNILAVTFTNKAAEEMKNRVAKMVDGVD------ 82

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                + LLI+           T H+FC  I+++   +    S+
Sbjct: 83  ---------------------KSLLIS-----------TFHSFCVRILRREAEKLGYQSN 110

Query: 157 FAIADEEQSKKLIEE 171
           F I D    +KLI++
Sbjct: 111 FVIFDSIDQRKLIKK 125


>gi|118590879|ref|ZP_01548279.1| DNA helicase II protein [Stappia aggregata IAM 12614]
 gi|118436401|gb|EAV43042.1| DNA helicase II protein [Stappia aggregata IAM 12614]
          Length = 812

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 43/185 (23%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ LA + T     V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 47  DYLTGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGLARPSEILAVTFTN 106

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+   +                                          G   
Sbjct: 107 KAAREMKERIAGFVGG-------------------------------------NVEGMAW 129

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I+++      + S F+I D +   +LI    K  + +  LD+     KAF
Sbjct: 130 LGTFHSICVKILRKHAELVGLKSSFSILDTDDQIRLI----KQIIQAEGLDDKRWTAKAF 185

Query: 193 YEILE 197
             IL+
Sbjct: 186 AGILD 190


>gi|317125678|ref|YP_004099790.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
 gi|315589766|gb|ADU49063.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
          Length = 1186

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 34/170 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCL 68
           +  +DL   T  +  +     R   V A AGSGKT  +  RV+  L+AN    P  +L L
Sbjct: 23  ARALDLPPPTDEQAAVVEAGPRPLLVVAGAGSGKTETMAARVV-WLVANGLVAPDQVLGL 81

Query: 69  THTKAAAAEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           T T+ AAAE+S R+ + +        WS   D+   AE+    G  P             
Sbjct: 82  TFTRKAAAELSQRIAKRLRGLVRAGVWSPPEDDGGGAEVL---GGTPT------------ 126

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
                     V T H++   ++++  L   I   F +  E  + +L  EA
Sbjct: 127 ----------VSTYHSYAGRLVREHALRLGIEPEFRVLTEAGAWQLAAEA 166


>gi|51246731|ref|YP_066615.1| ATP-dependent DNA helicase UvrD [Desulfotalea psychrophila LSv54]
 gi|50877768|emb|CAG37608.1| Probable ATP-dependent DNA helicase, UvrD/REP family
          [Desulfotalea psychrophila LSv54]
          Length = 733

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 37/73 (50%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          IDL     ++ L  +       V A AGSGKT  L+ RV  LL     P ++L LT T+ 
Sbjct: 16 IDLSGLNPAQHLAVTTTEGPVLVIAGAGSGKTRTLIYRVAHLLDKGVAPESILLLTFTRK 75

Query: 74 AAAEMSHRVLEII 86
          A+ EM  R  E++
Sbjct: 76 ASQEMVWRAGELL 88


>gi|315452894|ref|YP_004073164.1| DNA helicase [Helicobacter felis ATCC 49179]
 gi|315131946|emb|CBY82574.1| DNA helicase [Helicobacter felis ATCC 49179]
          Length = 926

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 37/155 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  LV R + LLL       +L +T T  AAAEM  RVL+       L + 
Sbjct: 13  LRASAGSGKTFALVLRYVALLLQGVRAHEILAITFTNKAAAEMQGRVLKA------LEEL 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL---------------------KVQ 134
           ++ A    ++ K P           L+  L+   GL                     ++ 
Sbjct: 67  LIDATSNPVEFKNPA----------LLQALQDTYGLDLGFIAPRIPAVYARFIQDKPQIM 116

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           TI AF + ++++F     +++ F ++  +  +KL+
Sbjct: 117 TIDAFFQRVLRKFSHFVGVSAQFVLSHLDPQEKLL 151


>gi|291518464|emb|CBK73685.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
           16/4]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 44/171 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT +L  RV  L+     P  ++ +T T  AA EM  R+  I+   S     
Sbjct: 23  ILAGAGSGKTRVLTHRVAYLIEQGVMPYNIMAITFTNKAAREMRERIDNIVGFGSD---- 78

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF--PLEANI 153
                                             G+ V T HA C  I+++F   L    
Sbjct: 79  ----------------------------------GVWVATFHASCVRILRRFCENLGQGY 104

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           +S+F I D +  K L++E  K     + +D  +  ++ F  ++  + ++ I
Sbjct: 105 SSNFTIYDTDDCKTLMKEVCK----YLQIDTKQFKERTFLNVISDAKNKLI 151


>gi|317050280|ref|YP_004111396.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
 gi|316945364|gb|ADU64840.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A + A AGSGKT +L  R++ LL     P  +L +T T  AA EM  R+
Sbjct: 30 ALILAGAGSGKTRVLTARIMNLLQQGVAPWNILAVTFTNKAAGEMRQRI 78


>gi|300726045|ref|ZP_07059503.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14]
 gi|299776652|gb|EFI73204.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14]
          Length = 1115

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93
           A+AGSGKT  L +  ++L++ +  P+    +L +T T  A  EM  R+L  +   W  L 
Sbjct: 13  ASAGSGKTFTLTKEYIKLVIKD--PTCYRNILAVTFTNKATEEMKMRILSTLYGIWKQLP 70

Query: 94  DEI-LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           D +    +ITK     P  +  ++A   L  ++      +V+TI  F +++++    E +
Sbjct: 71  DSVDYLKQITKEIDVSPELAS-AQAGKALSLLVHNYNYFRVETIDTFFQSVLRNLARELD 129

Query: 153 ITSHFAI 159
           +T++  I
Sbjct: 130 LTANLRI 136


>gi|34540779|ref|NP_905258.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Porphyromonas
          gingivalis W83]
 gi|34397093|gb|AAQ66157.1| ATP-dependent DNA helicase UvrD/PcrA/Rep Family [Porphyromonas
          gingivalis W83]
          Length = 765

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A V A AGSGKT +LV ++L L+ +   P+ L+ LT T  AA EM  RV
Sbjct: 24 ALVIAGAGSGKTRVLVYKLLHLIHSGYDPARLMALTFTNKAAKEMKERV 72


>gi|298372545|ref|ZP_06982535.1| helicase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275449|gb|EFI17000.1| helicase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 1036

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 14/159 (8%)

Query: 36  VSANAGSGKTHIL-VQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           + A+AGSGKT+ L +Q +LRL++        +L +T TK A AEM  R+L  + + ++ +
Sbjct: 4   LKASAGSGKTYNLAMQFILRLVVEGDEAFRHILAVTFTKDATAEMKLRILADLYSIANGN 63

Query: 94  DEILSAEITK-IQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           ++ L   I + + G++    +  K  A   L+ IL   G   V TI +F + +++    E
Sbjct: 64  NQSLIDNIKRELPGRRSITDEQIKVVAHRALLKILHDYGNFNVGTIDSFFQRVLRNLARE 123

Query: 151 ANITSHFAI------ADEEQSKKLIEEAKKSTLASIMLD 183
               S F I      A  E  +++I +A   T   ++LD
Sbjct: 124 LGKGSRFNIDLNDIKAVAEAVREVIAQAHNDT---VLLD 159


>gi|213965014|ref|ZP_03393213.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
 gi|213952550|gb|EEB63933.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
          Length = 899

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 40/141 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A    PS +L +T T  AAAEM  RV  ++        
Sbjct: 97  IVAGAGSGKTSVLTRRIAYLIGARGVLPSQILAITFTNKAAAEMRERVAGLV-------- 148

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                      G +  +                   + V T H+ C  I++ Q  L   +
Sbjct: 149 -----------GDQAQR-------------------MWVSTFHSMCVRILRMQHALVPGL 178

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
            S+F+I D + S++L+    K
Sbjct: 179 NSNFSIYDSDDSRRLLSMIAK 199


>gi|145633082|ref|ZP_01788814.1| DNA helicase II [Haemophilus influenzae 3655]
 gi|144986308|gb|EDJ92887.1| DNA helicase II [Haemophilus influenzae 3655]
          Length = 726

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 62 FTNKAAAEMRHRI 74


>gi|261868383|ref|YP_003256305.1| DNA-dependent helicase II [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413715|gb|ACX83086.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 724

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 38/167 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E +  S P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2   DFAELLDGLNDKQREAV--SAPLGNYLVLAGAGSGKTRVLTNRIAWLIGVEGISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+                            +S +S     L      
Sbjct: 60  VTFTNKAAAEMRHRI----------------------------ESVLSDGNQRLF----- 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             G+ V T H+    +++   L+A++   F I D E   +LI+   K
Sbjct: 87  --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQLRLIKRLMK 131


>gi|145635037|ref|ZP_01790743.1| DNA helicase II [Haemophilus influenzae PittAA]
 gi|145267645|gb|EDK07643.1| DNA helicase II [Haemophilus influenzae PittAA]
          Length = 726

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 62 FTNKAAAEMRHRI 74


>gi|145627832|ref|ZP_01783633.1| DNA helicase II [Haemophilus influenzae 22.1-21]
 gi|145639293|ref|ZP_01794899.1| DNA helicase II [Haemophilus influenzae PittII]
 gi|144979607|gb|EDJ89266.1| DNA helicase II [Haemophilus influenzae 22.1-21]
 gi|145271596|gb|EDK11507.1| DNA helicase II [Haemophilus influenzae PittII]
          Length = 726

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 62 FTNKAAAEMRHRI 74


>gi|319776569|ref|YP_004139057.1| DNA helicase II [Haemophilus influenzae F3047]
 gi|319897345|ref|YP_004135541.1| DNA helicase ii [Haemophilus influenzae F3031]
 gi|317432850|emb|CBY81215.1| DNA helicase II [Haemophilus influenzae F3031]
 gi|317451160|emb|CBY87393.1| DNA helicase II [Haemophilus influenzae F3047]
          Length = 727

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 63 FTNKAAAEMRHRI 75


>gi|317121134|ref|YP_004101137.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM
          12885]
 gi|315591114|gb|ADU50410.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM
          12885]
          Length = 791

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          DL++     Q  A + P     V A AGSGKT +L +RV  LL     P  +L +T T  
Sbjct: 3  DLLADLNPAQREAVTHPGGPVLVLAGAGSGKTRVLTRRVAFLLEQGVAPHQILAITFTNK 62

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 63 AAREMRERVEQLV 75


>gi|257456155|ref|ZP_05621352.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii
           ATCC 35580]
 gi|257446241|gb|EEV21287.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii
           ATCC 35580]
          Length = 1167

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 21/156 (13%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           ID+       Q  A     +A V+A AGSGKT +L  R + L+   N     +L LT T 
Sbjct: 9   IDICKDLNEHQKQAVKINENAVVAAGAGSGKTKVLASRYVYLITEKNYQVENILALTFTD 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+                 E+ K+      ++D +  R+     L++    +
Sbjct: 69  KAAAEMHRRIYR---------------ELQKMY----TETDDAMQRNRAGAALDSFFKAQ 109

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           + TI AFC  I         I+  F I D  +SK+L
Sbjct: 110 IMTIDAFCHKIAVTACRRFGISPDFTI-DLTESKRL 144


>gi|145637060|ref|ZP_01792723.1| DNA helicase II [Haemophilus influenzae PittHH]
 gi|145269714|gb|EDK09654.1| DNA helicase II [Haemophilus influenzae PittHH]
          Length = 726

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 62 FTNKAAAEMRHRI 74


>gi|148828339|ref|YP_001293092.1| DNA-dependent helicase II [Haemophilus influenzae PittGG]
 gi|148719581|gb|ABR00709.1| DNA helicase II [Haemophilus influenzae PittGG]
          Length = 726

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 39/155 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4   SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETP 128
            T  AAAEM HR+                            +S ++K A+H L+      
Sbjct: 62  FTNKAAAEMRHRI----------------------------QSTLAKHAQHQLV------ 87

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
            G+ + T H+    +++   L+  +   F I D E
Sbjct: 88  -GMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121


>gi|15128573|dbj|BAB62752.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           criceti]
          Length = 495

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R++ +L    + S L   T T  AA E+  R+           ++
Sbjct: 48  VSASAGSGKTFVMVERIIDMLKRGVNISQLFISTFTVKAAGELKERI-----------ED 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L  EI K Q       D +  +HL   + +      + T+ AF + ++  +     ++ 
Sbjct: 97  KLIKEIAKTQ-------DQALKQHLSAQLGDIQNA-DIGTMDAFAQKLVNTYGYSLGVSP 148

Query: 156 HFAIADEEQSKKLIE 170
           +F I  ++  + +++
Sbjct: 149 NFRIMQDKSEQDILK 163


>gi|307299290|ref|ZP_07579091.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915086|gb|EFN45472.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 47/208 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A  GSGKT ++  ++  L+  + +P  +L +T T+AA+ EM                 
Sbjct: 36  IVAGPGSGKTRVITYKIAHLVSNSINPQNILLVTFTRAASREM----------------- 78

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                             + +AR +  + L+   G+   T H  C   ++++   A +  
Sbjct: 79  ------------------IDRARRVSGSNLK---GMLSGTFHHVCNYFLRKYAKAAGLAE 117

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
           +F I D E +K LI+  +   L      N+  L  A   +L+      +  L S  +   
Sbjct: 118 NFTILDREDAKDLIKHCRTELLEERKGINSSTLPSA--GVLQSIYSYSVNVLSS--LRES 173

Query: 216 TALKLIFFFFSY-----LWRRKIIEKSL 238
           TA K   F  SY     +W+R + EK++
Sbjct: 174 TARKNRKFLGSYDEIEEIWKRYVQEKTV 201


>gi|260581112|ref|ZP_05848933.1| DNA helicase II [Haemophilus influenzae RdAW]
 gi|260092241|gb|EEW76183.1| DNA helicase II [Haemophilus influenzae RdAW]
          Length = 727

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 63 FTNKAAAEMRHRI 75


>gi|209515754|ref|ZP_03264617.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209503781|gb|EEA03774.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 696

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTAPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   ST
Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138


>gi|309973348|gb|ADO96549.1| DNA helicase II [Haemophilus influenzae R2846]
          Length = 727

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 63 FTNKAAAEMRHRI 75


>gi|225551821|ref|ZP_03772764.1| exodeoxyribonuclease V, beta subunit [Borrelia sp. SV1]
 gi|225371616|gb|EEH01043.1| exodeoxyribonuclease V, beta subunit [Borrelia sp. SV1]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|309751169|gb|ADO81153.1| DNA helicase II [Haemophilus influenzae R2866]
          Length = 727

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 63 FTNKAAAEMRHRI 75


>gi|301169926|emb|CBW29530.1| DNA-dependent ATPase I and helicase II [Haemophilus influenzae
          10810]
          Length = 727

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 63 FTNKAAAEMRHRI 75


>gi|224532974|ref|ZP_03673582.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi
          WI91-23]
 gi|224512091|gb|EEF82484.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi
          WI91-23]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|300690847|ref|YP_003751842.1| DNA helicase II [Ralstonia solanacearum PSI07]
 gi|299077907|emb|CBJ50546.1| DNA helicase II [Ralstonia solanacearum PSI07]
          Length = 795

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          DL++    EQ  A + P  SA + A AGSGKT +L  R+  L+ +    PS +L +T T 
Sbjct: 3  DLLAHLNPEQRTAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSGRVSPSGVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM+ R+
Sbjct: 63 KAAKEMTSRL 72


>gi|193216394|ref|YP_001997593.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
 gi|193089871|gb|ACF15146.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
          Length = 765

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 39/158 (24%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+    +EQ  A + T+    + A AGSGKT ++  R+  ++   N  P+ +L LT T  
Sbjct: 18  LLKSLNTEQKKAVETTKGPVMIIAGAGSGKTRVITFRIAYIINKENCAPNQILALTFTNK 77

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV EI+   S                                       GL +
Sbjct: 78  AANEMRSRVEEILGTGS-------------------------------------TRGLWI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            T H+    +++Q       TS + I D + SK LI++
Sbjct: 101 GTFHSNFARLLRQHADRLGFTSDYTIYDADDSKNLIKQ 138


>gi|115351375|ref|YP_773214.1| UvrD/REP helicase [Burkholderia ambifaria AMMD]
 gi|115281363|gb|ABI86880.1| ATP-dependent DNA helicase UvrD [Burkholderia ambifaria AMMD]
          Length = 840

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 56  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 115

Query: 73  AAAAEMSHRV 82
            AA EM  R+
Sbjct: 116 KAAREMMARL 125


>gi|15594978|ref|NP_212767.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi
          B31]
 gi|8134451|sp|O51578|EX5B_BORBU RecName: Full=Exodeoxyribonuclease V beta chain
 gi|2688551|gb|AAC66981.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi
          B31]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|158317729|ref|YP_001510237.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec]
 gi|158113134|gb|ABW15331.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec]
          Length = 851

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  R+  LL A  A P  +L +T T  AA EM  RV  I+
Sbjct: 88  VVAGAGSGKTRVLTHRIAYLLAARGARPGEILAITFTNKAAGEMKERVEAIV 139


>gi|324999173|ref|ZP_08120285.1| ATP-dependent DNA helicase PcrA [Pseudonocardia sp. P1]
          Length = 829

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  ++ +T T  AAAEM  RV  ++        
Sbjct: 49  IVAGAGSGKTRVLTHRIGWLLAERGVHPGEIMSITFTNKAAAEMKERVDGLV-------- 100

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G++                    G + V T H+ C  I+++      + 
Sbjct: 101 -----------GRR-------------------SGPMWVSTFHSMCVRILRREAKHLGVR 130

Query: 155 SHFAIADEEQSKKLI 169
           S F++ D + S++L+
Sbjct: 131 SAFSVYDADDSRRLV 145


>gi|307730434|ref|YP_003907658.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307584969|gb|ADN58367.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 787

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATILAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMSRL 72


>gi|163857713|ref|YP_001632011.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804]
 gi|163261441|emb|CAP43743.1| ATP-dependent DNA helicase [Bordetella petrii]
          Length = 707

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 30/51 (58%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT  L  RV  L+L  A P  +L LT ++ AA EM  RV  ++
Sbjct: 51  VIAGAGSGKTSTLAHRVAHLILNGADPQRMLLLTFSRRAAQEMERRVGMVL 101


>gi|225548947|ref|ZP_03769924.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 94a]
 gi|225370550|gb|EEG99986.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 94a]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|226320369|ref|ZP_03795938.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 29805]
 gi|226234232|gb|EEH32944.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 29805]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|170694337|ref|ZP_02885491.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170140760|gb|EDT08934.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 701

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   ST
Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138


>gi|226321331|ref|ZP_03796858.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi Bol26]
 gi|226233127|gb|EEH31879.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi Bol26]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|218249700|ref|YP_002375134.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi ZS7]
 gi|218164888|gb|ACK74949.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi ZS7]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|330827780|ref|YP_004390732.1| DNA helicase II [Aeromonas veronii B565]
 gi|328802916|gb|AEB48115.1| DNA helicase II [Aeromonas veronii B565]
          Length = 723

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 43/186 (23%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ +    P +++ +T T  AAAEM  RV ++I  
Sbjct: 21  PRSNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVI-- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                D +                                 G+ + T H     +++   
Sbjct: 79  ----GDGVR--------------------------------GMWIGTFHGIAHRLLRAHH 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
           L+A +   F I D +   +LI    +  L ++ LD      +A    +    DE +    
Sbjct: 103 LDAGLPQDFQILDSDDQYRLI----RRVLKALNLDEKHWAPRAVMGYINGKKDEGLRPGD 158

Query: 209 SDIISN 214
            D+  +
Sbjct: 159 IDLYGD 164


>gi|224533481|ref|ZP_03674071.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi
          CA-11.2a]
 gi|224513361|gb|EEF83722.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi
          CA-11.2a]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|221217840|ref|ZP_03589307.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 72a]
 gi|221192146|gb|EEE18366.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 72a]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|225550058|ref|ZP_03771019.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 118a]
 gi|225369517|gb|EEG98969.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 118a]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|145295025|ref|YP_001137846.1| hypothetical protein cgR_0969 [Corynebacterium glutamicum R]
 gi|140844945|dbj|BAF53944.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 763

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 41/158 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DLI     +Q  A +   S   + A AGSGKT +L +R+  L+     HP  +L +T T 
Sbjct: 12  DLIDGLNEQQRAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV +++                      P    M                  
Sbjct: 72  KAAAEMRERVSQLV---------------------GPVAERMW----------------- 93

Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLI 169
           V T H+ C  I+ QQ  L   + ++F I D + S++L+
Sbjct: 94  VATFHSVCVRILRQQAQLVEGLNTNFTIYDSDDSRRLL 131


>gi|322804716|emb|CBZ02268.1| ATP-dependent nuclease, subunit A [Clostridium botulinum H04402
           065]
          Length = 319

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LVQR++  +L    P     LL +T T AAAAEM  R+ + I   S   DE   ++
Sbjct: 31  KTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKGLDEDPESK 87

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           + + Q    NKS+                   + TIH+FC  +++       I  +F I 
Sbjct: 88  VLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNFHTMEIDPNFRIC 128

Query: 161 DEEQSKKLIEEA 172
           DE +   + +EA
Sbjct: 129 DETEGILMKQEA 140


>gi|223889347|ref|ZP_03623933.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 64b]
 gi|223885033|gb|EEF56137.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 64b]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|195941453|ref|ZP_03086835.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi
          80a]
 gi|312149352|gb|ADQ29423.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi N40]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|189459925|ref|ZP_03008710.1| hypothetical protein BACCOP_00558 [Bacteroides coprocola DSM 17136]
 gi|189433359|gb|EDV02344.1| hypothetical protein BACCOP_00558 [Bacteroides coprocola DSM 17136]
          Length = 1606

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 24   QLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRV 82
            ++++   +R   V+A  GSGKT +LV ++   LLL +     LL LT ++AAA E   R+
Sbjct: 1062 EIISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQRL 1121

Query: 83   LEIITAWSH 91
            +E+I   +H
Sbjct: 1122 MELIGNAAH 1130


>gi|317472659|ref|ZP_07931974.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316899836|gb|EFV21835.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 618

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A  GSGKT ++ +R   L+     +PS +L +T TKAAAAEM  R L++
Sbjct: 21 VLAGPGSGKTTVITERTKYLIEHCGVNPSNILVITFTKAAAAEMKERFLKL 71


>gi|312148305|gb|ADQ30964.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi JD1]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|312884293|ref|ZP_07744002.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368066|gb|EFP95609.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 1204

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 23/136 (16%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV 82
           S  + A+AG+GKT  +    LRLLL +   ST          +L +T T+AA AE+  R+
Sbjct: 21  SRLIEASAGTGKTFTIAGLYLRLLLGHGSSSTRHASPLTVDQILVVTFTEAATAELKDRI 80

Query: 83  LEII----TAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
              I     A+S     D +++  +T IQ       D   A  +L+          + TI
Sbjct: 81  RSRIHSARLAFSRGESDDPVIAPLLTDIQ-------DHQAASEILLQAERQIDEAAIFTI 133

Query: 137 HAFCEAIMQQFPLEAN 152
           H FC+ +++Q   E+ 
Sbjct: 134 HGFCQRVLKQNAFESG 149


>gi|300703480|ref|YP_003745082.1| DNA helicase II [Ralstonia solanacearum CFBP2957]
 gi|299071143|emb|CBJ42456.1| DNA helicase II [Ralstonia solanacearum CFBP2957]
          Length = 791

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P  SA + A AGSGKT +L  R+  L+ ++   PS +L +T T 
Sbjct: 3  DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSSRVSPSGVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM+ R+
Sbjct: 63 KAAKEMTARL 72


>gi|295678114|ref|YP_003606638.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295437957|gb|ADG17127.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 696

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTAPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   ST
Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138


>gi|170728818|ref|YP_001762844.1| DNA-dependent helicase II [Shewanella woodyi ATCC 51908]
 gi|169814165|gb|ACA88749.1| DNA helicase II [Shewanella woodyi ATCC 51908]
          Length = 721

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4   SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV                        +K + S+M              G
Sbjct: 62  FTNKAAAEMRERV------------------------EKVSGSNM--------------G 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  +
Sbjct: 84  RMWIGTFHGLAHRLLRTHYQDANLPQTFQIIDSDDQLRLI----KRILKSLNLDEKQ 136


>gi|302670353|ref|YP_003830313.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
 gi|302394826|gb|ADL33731.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
          Length = 847

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 43/169 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L SQ K   L    P     + A AGSGKT +L  RV  L+   N +P  ++ +T T  A
Sbjct: 7   LNSQQKKAVLQTDGPV---LILAGAGSGKTRVLTHRVAYLIDECNVNPWNIMAITFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +I+            AE                              + V 
Sbjct: 64  AGEMRERVDKIVG---------FGAE-----------------------------SIWVS 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIML 182
           T H+ C  I++++  +   +++F I D + SK L+++  KK  L +  L
Sbjct: 86  TFHSSCVRILRRYADKLGFSNNFTIYDTDDSKTLMKDICKKYQLETTQL 134


>gi|212716069|ref|ZP_03324197.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661436|gb|EEB22011.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
           16992]
          Length = 907

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 38/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT +L +R+  LL      S++L +T T  AAAEM  R+  ++         
Sbjct: 52  IGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLAALVG-------- 103

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +A H+ I+           T H+ C  I+++   E  +TS
Sbjct: 104 -------------------PEAEHMWIS-----------TFHSACVRILRRDGKEIGLTS 133

Query: 156 HFAIADEEQSKKLIE 170
            F+I D    ++L++
Sbjct: 134 GFSIYDTADCERLVK 148


>gi|216264167|ref|ZP_03436159.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 156a]
 gi|215980640|gb|EEC21447.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 156a]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT TK A  EM  R+L++I  A+S+  
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|291166490|gb|EFE28536.1| ATP-dependent DNA helicase PcrA [Filifactor alocis ATCC 35896]
          Length = 725

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 17 ISQTKSEQLLASDPTRSAW----VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          I++   EQL   D  ++A     + A AGSGKT ++  R+  L+     PS +L LT T 
Sbjct: 3  IAELNKEQL---DAVQTAGGNMLILAGAGSGKTRVITYRIAYLINHGVSPSNILALTFTN 59

Query: 73 AAAAEMSHRVLEIIT 87
           AA EM  R+  I++
Sbjct: 60 KAANEMKDRLSSILS 74


>gi|314933179|ref|ZP_07840544.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87]
 gi|313653329|gb|EFS17086.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87]
          Length = 1218

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 37/192 (19%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +LV+R++ R+L  N     LL +T T  +A EM  RV +          
Sbjct: 28  VAAAAGSGKTAVLVERIIQRILRDNMDVDLLLVVTFTNLSAREMKLRVDQ---------- 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   +IQ     + D    ++  + I +     ++ T+H+FC  ++Q         
Sbjct: 78  --------RIQEASLAEPDNEHLKNQRVKIHQA----QISTLHSFCLKLIQL-------- 117

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
            H+ + D + + +   EA+   L    +D   ++ +  Y+IL+    E  E L SD   +
Sbjct: 118 -HYDVLDIDPNFRTSSEAENVLLLDQTID---DVLERHYDILDSDFIELTEQLSSDRNDD 173

Query: 215 --RTALKLIFFF 224
             R  +K ++FF
Sbjct: 174 QFRNIIKRLYFF 185


>gi|282877935|ref|ZP_06286744.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC
          35310]
 gi|281299936|gb|EFA92296.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC
          35310]
          Length = 810

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          DL+SQ   EQ  A         V A AGSGKT +L  ++  L+     P ++L LT T  
Sbjct: 3  DLLSQLNQEQRSAVTYNDGPQLVIAGAGSGKTRVLTYKIAYLVQQGMQPWSILALTFTNK 62

Query: 74 AAAEMSHRVLEII 86
          AA EM  R+ ++I
Sbjct: 63 AANEMKQRIAQLI 75


>gi|293392075|ref|ZP_06636409.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952609|gb|EFE02728.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 724

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 38/167 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E +  S P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2   DFAELLDGLNDKQREAV--SAPLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+                            +S +S     L      
Sbjct: 60  VTFTNKAAAEMRHRI----------------------------ESVLSDGNQRLF----- 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             G+ V T H+    +++   L+A++   F I D E   +LI+   K
Sbjct: 87  --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQLRLIKRLMK 131


>gi|85859303|ref|YP_461505.1| exodeoxyribonuclease V subunit beta [Syntrophus aciditrophicus SB]
 gi|85722394|gb|ABC77337.1| exodeoxyribonuclease V beta chain [Syntrophus aciditrophicus SB]
          Length = 1230

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 11/136 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL----EIITAWS 90
           + ANAG+GKT+ +    LRL++ +A     +L +T+T AA  E+  R+       + A  
Sbjct: 17  IEANAGTGKTYAISGLFLRLIVEHALQVGEILVMTYTVAATEELKDRIRCTLSRALEALG 76

Query: 91  H--LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           H  + D  L + + ++       S    AR  L T L       + TIH FC+  +Q+  
Sbjct: 77  HGRVEDLFLDSFVRRLAEDDRTNS----ARRRLATALRDFDEAAIFTIHGFCQRTLQENA 132

Query: 149 LEANITSHFAIADEEQ 164
            E++ T +  +  E +
Sbjct: 133 FESHSTFNAELITESE 148


>gi|307731432|ref|YP_003908656.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307585967|gb|ADN59365.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 699

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   ST
Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138


>gi|157373608|ref|YP_001472208.1| DNA-dependent helicase II [Shewanella sediminis HAW-EB3]
 gi|157315982|gb|ABV35080.1| DNA helicase II [Shewanella sediminis HAW-EB3]
          Length = 721

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4   SSLLDGLNDEQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV                        +K + S+M              G
Sbjct: 62  FTNKAAAEMRERV------------------------EKVSGSNM--------------G 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  +
Sbjct: 84  RMWIGTFHGLAHRLLRTHYKDANLPQTFQIIDSDDQLRLI----KRILKSLHLDEKQ 136


>gi|172060415|ref|YP_001808067.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
 gi|171992932|gb|ACB63851.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
          Length = 787

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|323527814|ref|YP_004229967.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323384816|gb|ADX56907.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 699

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   ST
Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138


>gi|269115227|ref|YP_003302990.1| ATP-dependent helicase [Mycoplasma hominis]
 gi|268322852|emb|CAX37587.1| ATP-dependent helicase [Mycoplasma hominis ATCC 23114]
          Length = 745

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 39/157 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           DL  Q KS  +    P R   + A AGSGKT +L  ++  L+      P+ +L LT +  
Sbjct: 6   DLNEQQKSAVIYNEGPLR---IIAGAGSGKTRVLTYKIAYLIQKLGVLPNRILALTFSNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++                     + N S++S                 +
Sbjct: 63  AANEMKQRVFNLLA--------------------EDNPSNLSPY---------------I 87

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            T HA C  I+++        + F I DE   K++++
Sbjct: 88  STFHAMCAKILRKEIYNFGYENDFQILDELDQKEILK 124


>gi|114330786|ref|YP_747008.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114307800|gb|ABI59043.1| ATP-dependent DNA helicase UvrD [Nitrosomonas eutropha C91]
          Length = 748

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          L++    EQL A   P +SA + A AGSGKT +L  R+  LL +    P  LL +T T  
Sbjct: 4  LLTDLNPEQLEAVTWPHQSALILAGAGSGKTRVLTTRIAYLLQSGLTQPQNLLAVTFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 64 AAREMVARI 72


>gi|262037611|ref|ZP_06011062.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264]
 gi|261748356|gb|EEY35744.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264]
          Length = 1055

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 17/188 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT--AWSHLS 93
           + A+AG+GKT+ L    +  L+       ++ +T TK A AE+  R+ + +   A+    
Sbjct: 6   LKASAGTGKTYRLSLEYIANLIKGISYKNIIVMTFTKKATAEIKDRIYDFLYQIAFEKYK 65

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            E L   + +I G +  + D +  +++   +++    +++ TI  F   I +       I
Sbjct: 66  FEELEKSLKEIYGFQGGEIDKNSLQNIYFEMIKNKDEIRIYTIDGFTNQIFKN-----TI 120

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIM---LDNNEELKKAFYEILEISNDEDIE---TL 207
              F I   E     ++E        I+   L+NNE  +K  +   E    +DI+     
Sbjct: 121 APFFGIYGYET----LDEEDDGFYEDILVKILNNNEYFEKFSFVFEEKKERKDIKKYVKF 176

Query: 208 ISDIISNR 215
           I +II+ R
Sbjct: 177 IKNIINIR 184


>gi|19552081|ref|NP_600083.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389744|ref|YP_225146.1| ATP-dependent helicase PcrA [Corynebacterium glutamicum ATCC 13032]
 gi|21323620|dbj|BAB98247.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325079|emb|CAF19560.1| ATP-DEPENDENT HELICASE PCRA [Corynebacterium glutamicum ATCC 13032]
          Length = 763

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 41/158 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DLI     +Q  A +   S   + A AGSGKT +L +R+  L+     HP  +L +T T 
Sbjct: 12  DLIDGLNEQQRAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV +++                      P    M                  
Sbjct: 72  KAAAEMRERVSQLV---------------------GPVAERMW----------------- 93

Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLI 169
           V T H+ C  I+ QQ  L   + ++F I D + S++L+
Sbjct: 94  VATFHSVCVRILRQQAQLVEGLNTNFTIYDSDDSRRLL 131


>gi|145219316|ref|YP_001130025.1| ATP-dependent DNA helicase PcrA [Prosthecochloris vibrioformis DSM
           265]
 gi|145205480|gb|ABP36523.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeovibrioides DSM
           265]
          Length = 728

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 39/159 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
           DL+    + Q  A+  T     V A AGSGKT ++  R+  L+     P+  +L LT T 
Sbjct: 3   DLLQDLSAVQRDAASATEGPVMVLAGAGSGKTRVITYRIANLIGNQGVPAGNILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HRV           D++L           P  S                GGL 
Sbjct: 63  KAAGEMRHRV-----------DQLLG----------PGSS----------------GGLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           + T H+    +++++      +  F+I D + SK LI +
Sbjct: 86  IGTFHSVFARLLREYIDRLGYSRSFSIFDSDDSKSLIRQ 124


>gi|326771959|ref|ZP_08231244.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505]
 gi|326638092|gb|EGE38993.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505]
          Length = 957

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 53/137 (38%), Gaps = 43/137 (31%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+    A P  +L +T T  AAAEM  RV            
Sbjct: 129 IIAGAGSGKTRVLTHRIAHLIATGRARPGEILAITFTNKAAAEMRERV------------ 176

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEAN 152
                                       T L  P G +  V T H+ C  I+++    A 
Sbjct: 177 ----------------------------TALVGPAGERMWVSTFHSACVRILRREHEAAG 208

Query: 153 ITSHFAIADEEQSKKLI 169
           + S F+I D   S +LI
Sbjct: 209 LRSTFSIYDAADSTRLI 225


>gi|325860071|ref|ZP_08173197.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A]
 gi|325482356|gb|EGC85363.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A]
          Length = 842

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
          Q+  E I L +  +S++      T  + V A AGSGKT +L  ++  LL     P  +L 
Sbjct: 4  QDREEEI-LSALNESQRAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILA 62

Query: 68 LTHTKAAAAEMSHRVLEIITA 88
          LT T  AA EM  R+  I TA
Sbjct: 63 LTFTNKAAREMKERIARITTA 83


>gi|303233093|ref|ZP_07319766.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae
           PB189-T1-4]
 gi|302480678|gb|EFL43765.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae
           PB189-T1-4]
          Length = 873

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 47/156 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  ++      P  +L +T T  AA EM  R LE++ +      
Sbjct: 83  VLAGAGSGKTRVLTHRIAYIIQHEQVQPWRILAITFTNKAAKEMRER-LEMLLS------ 135

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          ET  G+ V T HA C  I+++       T
Sbjct: 136 -------------------------------ETMRGMWVCTFHAMCSRILREHADVLGYT 164

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           S+F + D+  SK+L++        +IM D N + KK
Sbjct: 165 SNFVVYDDSDSKRLVK--------TIMDDLNLDTKK 192


>gi|295396697|ref|ZP_06806843.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970443|gb|EFG46372.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 769

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 43/141 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  +L    AHP  +L +T T  AA EM  RV  ++        
Sbjct: 49  IVAGAGSGKTTVLTRRIAHILATGQAHPGQILAITFTNKAAREMLDRVTSLVG------- 101

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153
                                +AR           G+ + T H+ C  I+++   EA + 
Sbjct: 102 --------------------ERAR-----------GMWISTFHSACVRILRR---EARDR 127

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           TS+F+I D + S +LI +  K
Sbjct: 128 TSNFSIYDAQDSLRLITQVTK 148


>gi|255009003|ref|ZP_05281129.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12]
 gi|313146743|ref|ZP_07808936.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12]
 gi|313135510|gb|EFR52870.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12]
          Length = 1057

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +    H+ D  
Sbjct: 9   ASAGSGKTFTLATEYIKLLIQNPRAYRQILAVTFTNKATAEMKERILSQLYG-IHIVDPD 67

Query: 97  LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I  +     D     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SDAYLKRIIAETGRSEDEIRKTAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|171319519|ref|ZP_02908620.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
 gi|171095259|gb|EDT40249.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
          Length = 787

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|170702107|ref|ZP_02893019.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
 gi|170132982|gb|EDT01398.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
          Length = 787

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|56808113|ref|ZP_00365902.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Streptococcus pyogenes M49 591]
          Length = 405

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|326383701|ref|ZP_08205386.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197465|gb|EGD54654.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 834

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 40/136 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL   +  P  +L +T T  AAAEM  RV++++        
Sbjct: 41  IVAGAGSGKTAVLTRRIAFLLAERDVTPGQILAITFTNKAAAEMRERVIDLV-------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                         P  + M                  V T H+ C  I++ Q  L  N 
Sbjct: 93  -------------GPRAAYMW-----------------VSTFHSTCVRILRAQSGLLGNR 122

Query: 154 TSHFAIADEEQSKKLI 169
            S+F+I D + S++L+
Sbjct: 123 NSNFSIYDADDSRRLL 138


>gi|323978469|gb|EGB73552.1| UvrD/REP helicase [Escherichia coli TW10509]
          Length = 632

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          ID +SQ++ E + A  P   A  V A+AGSGKT +L +RV R +L N+   +++ LT T 
Sbjct: 2  IDNLSQSQIEVVRA--PMGGAIQVLASAGSGKTRVLTERV-RFILNNSARGSVVALTFTN 58

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 59 KAADEMLERL 68


>gi|157962241|ref|YP_001502275.1| exodeoxyribonuclease V subunit beta [Shewanella pealeana ATCC
           700345]
 gi|157847241|gb|ABV87740.1| exodeoxyribonuclease V, beta subunit [Shewanella pealeana ATCC
           700345]
          Length = 1238

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEII- 86
           S  + A+AG+GKT  +    +RLLL +   + L C     +T T AA  E+  R+ + I 
Sbjct: 40  SRLIEASAGTGKTFTIAGLYVRLLLGHGIEAPLTCEQILVVTFTNAATGELRDRIRKKIQ 99

Query: 87  -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 +  E+    I  +    P  S +  AR  L   L++     + TIH FC+ I+ 
Sbjct: 100 LAYRCFIGLEVDDELINSLYQATPEAS-LPIARKRLDLALKSLDEAAIFTIHGFCQRILA 158

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 159 DMAFESSLLFESEFTLDDSE 178


>gi|90021650|ref|YP_527477.1| DNA helicase/exodeoxyribonuclease V subunit A [Saccharophagus
           degradans 2-40]
 gi|89951250|gb|ABD81265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Saccharophagus
           degradans 2-40]
          Length = 1155

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 17/201 (8%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A D ++S  V+A AGSGKT +L  RVL+LL     P  +L +T T+ AAAEM  R++  +
Sbjct: 12  ALDISQSWVVTAPAGSGKTGLLTLRVLKLLAVVESPEEILAITFTRKAAAEMLERIVGAL 71

Query: 87  TAWSHLSDEILSAE----ITKIQGK------KPNKSDMSKARHLLITILETPGGLKVQTI 136
                L+     A+    I +I  +      +   + +++ +     +L+    LK+ TI
Sbjct: 72  IEADELTRNCSPAQALEKINQIDDEHTLRFMQSAYAALARDKTQGWNLLQNTHRLKITTI 131

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
             FC  +  Q P+ +    +  I DE   + L E+A  + + S      E+   A  ++L
Sbjct: 132 DGFCRELSNQLPMLSGAGVNPQICDE--PRLLYEQAVMNLIESYKTGACEQ---AINQVL 186

Query: 197 -EISNDED-IETLISDIISNR 215
             + ND D ++ L+ D++ +R
Sbjct: 187 THLDNDLDRVKRLLVDLLGSR 207


>gi|83319825|ref|YP_424677.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|90110084|sp|P45612|UVRD_MYCCT RecName: Full=Probable DNA helicase II homolog
 gi|83283711|gb|ABC01643.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 722

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 47/172 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P R   + A AGSGKT ++  ++  L+   N  PS +L +T T  AA EM  RVL+I   
Sbjct: 24  PVR---IIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKEMKERVLQI--- 77

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                N S             ++P    + T H++C  +++   
Sbjct: 78  --------------------TNNS------------FKSPF---ISTFHSWCSKVLRIDG 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILE 197
               +   F I D +  K++I+ A K   ++I L  N++    KK  Y+I E
Sbjct: 103 KHIGLEDKFLIIDSDDQKRIIKSALKE--SNIELSENDKKTFDKKILYKIKE 152


>gi|146296855|ref|YP_001180626.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410431|gb|ABP67435.1| ATP-dependent DNA helicase PcrA [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 714

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
          + +   EQL A   T     V A AGSGKT ++  R+  +L +  A PS +L +T T  A
Sbjct: 4  LKELNKEQLEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLAKPSNILAITFTNKA 63

Query: 75 AAEMSHRVLEIITAWS 90
          A EM  R+ ++++  S
Sbjct: 64 ADEMKERIKKLVSVES 79


>gi|327314684|ref|YP_004330121.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289]
 gi|326946329|gb|AEA22214.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289]
          Length = 842

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
          Q+  E I L +  +S++      T  + V A AGSGKT +L  ++  LL     P  +L 
Sbjct: 4  QDREEDI-LSALNESQRAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILA 62

Query: 68 LTHTKAAAAEMSHRVLEIITA 88
          LT T  AA EM  R+  I TA
Sbjct: 63 LTFTNKAAREMKERIARITTA 83


>gi|145631236|ref|ZP_01787009.1| DNA helicase II [Haemophilus influenzae R3021]
 gi|144983163|gb|EDJ90658.1| DNA helicase II [Haemophilus influenzae R3021]
          Length = 726

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4  SELLDGLNDKQHEAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 62 FTNKAAAEMRHRI 74


>gi|218261884|ref|ZP_03476569.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223732|gb|EEC96382.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii
          DSM 18315]
          Length = 261

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          E +  +++++ E ++ +D    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 24 EYLKQLNESQREAVVYTDG--PSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFT 81

Query: 72 KAAAAEMSHRV 82
            AA EM  R+
Sbjct: 82 NKAAREMKERI 92


>gi|254428788|ref|ZP_05042495.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881]
 gi|196194957|gb|EDX89916.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881]
          Length = 757

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 84/218 (38%), Gaps = 45/218 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLT 69
           +  ID ++  + + + A D  R   V A AGSGKT +LV R+  ++    A P  +L +T
Sbjct: 42  TSLIDGLNPAQRDAVAADD--RHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILAVT 99

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ +++                          DMS              
Sbjct: 100 FTNKAAAEMRGRIEQLL--------------------------DMSA------------D 121

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+ V T H     +++    EA +   F I D +   +LI+   K     + LD      
Sbjct: 122 GMWVGTFHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSK----ELGLDEQRWPA 177

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
           +     +    DE +     D+  +  AL +   +F+Y
Sbjct: 178 RQATWFINGQKDEGLRARHMDVGGDLFALTMQKIYFAY 215


>gi|260881142|ref|ZP_05893318.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544]
 gi|260849631|gb|EEX69638.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544]
          Length = 773

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  LL     P ++L +T T  AA EM  RV  +I
Sbjct: 28 IMAGAGSGKTKVLTCRIANLLAQGVAPYSILAITFTNKAATEMRERVDRMI 78


>gi|149928113|ref|ZP_01916360.1| UvrD/REP helicase [Limnobacter sp. MED105]
 gi|149823199|gb|EDM82436.1| UvrD/REP helicase [Limnobacter sp. MED105]
          Length = 743

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
          + L+     EQL A + P  SA + A AGSGKT +L  R+  L+      P+ +L +T T
Sbjct: 1  MSLLDSLNPEQLAAVTLPRESALILAGAGSGKTKVLTARIAWLIQTGQVGPNGVLAVTFT 60

Query: 72 KAAAAEMSHRV 82
            AA EM HR+
Sbjct: 61 NKAAKEMLHRI 71


>gi|150400668|ref|YP_001324434.1| UvrD/REP helicase [Methanococcus aeolicus Nankai-3]
 gi|150013371|gb|ABR55822.1| UvrD/REP helicase [Methanococcus aeolicus Nankai-3]
          Length = 751

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 26/114 (22%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           WV A  GSGKT +LV R L+L+  +  +P +++  T TK A+  +  R+++  T    L 
Sbjct: 21  WVVAGPGSGKTEVLVVRTLKLIFVDGVNPKSIILTTFTKKASQNLFDRIIKYSTKLYDLY 80

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            E+  + I +I                          L+V T+H+ C  IM+++
Sbjct: 81  PELKGSSI-EIH------------------------SLRVGTLHSLCNDIMKEY 109


>gi|329955053|ref|ZP_08296034.1| UvrD/REP helicase [Bacteroides clarus YIT 12056]
 gi|328526343|gb|EGF53358.1| UvrD/REP helicase [Bacteroides clarus YIT 12056]
          Length = 1128

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L ++   W   +D 
Sbjct: 8   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWK--ADP 65

Query: 96  ILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              A + +I+ +  N S +S      +A   L  +L      +V+TI +F +++M+    
Sbjct: 66  ASDAYLKRIK-EDLNSSSLSDKELRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLAR 124

Query: 150 EANITSHFAI 159
           E  ++ +  I
Sbjct: 125 ELELSPNLNI 134


>gi|323453081|gb|EGB08953.1| hypothetical protein AURANDRAFT_63493 [Aureococcus anophagefferens]
          Length = 787

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 37/135 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT  L +RV R + + A P  +L LT +  AA E+  R+ +      HL + 
Sbjct: 22  IVAGAGSGKTETLTRRVARAISSGARPEGVLVLTFSNKAARELRGRLAK------HLGEA 75

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +                    AR            ++  T H+FC  ++++F  EA +  
Sbjct: 76  V-------------------AAR------------VECATFHSFCLRLLRRFGREAGLGP 104

Query: 156 HFAIADEEQSKKLIE 170
            F+I  +   + L++
Sbjct: 105 DFSIFGDAAQRALVK 119


>gi|306827618|ref|ZP_07460898.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC
           10782]
 gi|304430181|gb|EFM33210.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC
           10782]
          Length = 1222

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + 
Sbjct: 54  QNVLVSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENK 107

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L  +I  A+ T  Q K             L   L++     + T+ AF + ++ ++    
Sbjct: 108 LYSQI--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSI 154

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            I+S F I  ++  + ++++   S L S  ++  E
Sbjct: 155 GISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|198284778|ref|YP_002221099.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666705|ref|YP_002427463.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249299|gb|ACH84892.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518918|gb|ACK79504.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 709

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          P+  A V A AGSGKT +L  R+  LL  + +P  +L +T T  AA  M  R+  ++ 
Sbjct: 18 PSGPALVLAGAGSGKTRVLTSRIAHLLEGDVYPGAILAVTFTNKAARAMRGRLDGMVA 75


>gi|84687759|ref|ZP_01015631.1| Possible DNA helicase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664260|gb|EAQ10752.1| Possible DNA helicase [Rhodobacterales bacterium HTCC2654]
          Length = 1569

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
            Q ++E +D +  T   Q++  D  ++   V A  GSGKT +LV RV  L+ +    P+ +
Sbjct: 945  QTYAEIVDDLGNTTQAQIVRDDREQTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGI 1004

Query: 66   LCLTHTKAAAAEMSHRVLEII 86
            L L + + AAAE+  R+  +I
Sbjct: 1005 LVLAYNRHAAAEIRERLRRLI 1025


>gi|332173435|gb|AEE22689.1| exodeoxyribonuclease V, beta subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1315

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 16/151 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP---STLLCLTHTKAAAAEMSHRVLE-- 84
           T ++ + A+AG+GKT+ +V   LRLLL +   P     +L +T T AA AE+  R+ +  
Sbjct: 12  TGASLIEASAGTGKTYTIVNLYLRLLLGDECTPLSVDKILVVTFTNAATAELKQRIRQRL 71

Query: 85  ---IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
                  ++H SD+    E T+    +    ++    H L+  ++      V TIH FC+
Sbjct: 72  QRAYFDFYAHKSDD----EFTQYLIDRSENIELDC--HRLLLAIKQMDDASVFTIHGFCQ 125

Query: 142 AIMQQFPLEAN-ITSHFAIADEEQSKKLIEE 171
            ++     E+  +     + DE Q  KL  E
Sbjct: 126 RMLSLHAFESGAMYEQSLVLDESQWLKLAVE 156


>gi|291302043|ref|YP_003513321.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571263|gb|ADD44228.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 1041

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
          T+ +      P R   + A AGSGKT  +  RV+  L+AN  A P  +L LT T+ AAAE
Sbjct: 22 TEQQATAIEAPLRPQLIVAGAGSGKTGTMASRVV-WLIANGYARPEQILGLTFTRKAAAE 80

Query: 78 MSHRVLEIITAWSHL 92
          ++ R+ E +   S L
Sbjct: 81 LASRIRERLARLSGL 95


>gi|187736051|ref|YP_001878163.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426103|gb|ACD05382.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 1054

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           P  +  +SA+AG+GKT+ L  R L LL  N+  HP  L+ +T T+ AA E   R+L  + 
Sbjct: 3   PLTNMLISASAGTGKTYQLSLRFLGLLALNSGNHPERLIAITFTRKAAGEFKDRILTDLA 62

Query: 88  AWSHLSDEILSAEITK 103
           A +  +DE  +A + +
Sbjct: 63  AGA--TDEAGAARLKE 76


>gi|150377933|ref|YP_001314528.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
 gi|150032480|gb|ABR64595.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
          Length = 689

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AGSGKT+ L  RV  L++  A P  +L +T ++ AA EM+ RV  I
Sbjct: 36 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAYEMTRRVKSI 83


>gi|254442638|ref|ZP_05056114.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198256946|gb|EDY81254.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 665

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 27/50 (54%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          A AGSGKT  L  RV  LL     P  +L LT T  AA EM  RV E+ T
Sbjct: 42 AGAGSGKTRTLTYRVAYLLSQGVRPGEILLLTFTNKAAKEMLSRVEELTT 91


>gi|77359094|ref|YP_338669.1| DNA-dependent helicase II [Pseudoalteromonas haloplanktis TAC125]
 gi|76874005|emb|CAI85226.1| DNA-dependent ATPase I and helicase II; highly similar to
           PSHA_1_2804 [Pseudoalteromonas haloplanktis TAC125]
          Length = 721

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 45/193 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ +  A   ++  +T
Sbjct: 4   SQLLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASTYSIFAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV           +E L A +                           G
Sbjct: 62  FTNKAAKEMRTRV-----------EETLKAPV---------------------------G 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+ + T H     I++    EA +   F I D +   ++I    K  L S+ +D+ +   
Sbjct: 84  GMWIGTFHGLSHRILRAHHREAKLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKWPA 139

Query: 190 KAFYEILEISNDE 202
           K F   +    DE
Sbjct: 140 KQFGWYISAKKDE 152


>gi|294785780|ref|ZP_06751068.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27]
 gi|294487494|gb|EFG34856.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27]
          Length = 737

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 39/145 (26%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV E+
Sbjct: 17  ASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERVEEL 76

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +                          D++KA               + T H+F   +++
Sbjct: 77  V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 98

Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170
            +  E    S+F I D +  K++++
Sbjct: 99  MYAKEVEYNSNFTIYDTDDQKRIVK 123


>gi|170695890|ref|ZP_02887030.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170139188|gb|EDT07376.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 787

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMSRL 72


>gi|318040198|ref|ZP_07972154.1| UvrD/REP helicase [Synechococcus sp. CB0101]
          Length = 1204

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 17/144 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-------LEI 85
           + A+AG+GKT  L   VLRLL     P     LL +T T AAAAE+  R+       L++
Sbjct: 20  LEASAGTGKTFALAHLVLRLLSEGRAPLAVEQLLVVTFTDAAAAELRDRIARRLQDALQL 79

Query: 86  ITAWSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +   S  +  D  L+A +  +    P               LE      + TIH FC   
Sbjct: 80  LEPGSSATPGDAPLAAWLEALGPNPPALLRGRLL-----LALEQLDRADITTIHGFCRRT 134

Query: 144 MQQFPLEANITSHFAIADEEQSKK 167
           +Q+  LEA +    ++  E + ++
Sbjct: 135 LQRQALEAGLGPAVSLESEGRERR 158


>gi|289766345|ref|ZP_06525723.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11]
 gi|289717900|gb|EFD81912.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11]
          Length = 735

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 39/155 (25%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV E+
Sbjct: 15  ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERVEEL 74

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +                          D++KA               + T H+F   +++
Sbjct: 75  V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 96

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            +  E    S+F I D +  K++++   K    SI
Sbjct: 97  MYGKEVGYNSNFTIYDTDDQKRIVKAILKGQNLSI 131


>gi|5734491|emb|CAB52698.1| DNA helicase [Prochlorococcus marinus]
          Length = 519

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 22/146 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+      PS +L +T T  AA EM  R LEI         
Sbjct: 28  VVAGAGSGKTRALTHRIAHLISEYKVEPSEILAVTFTNKAAREMKDR-LEI--------- 77

Query: 95  EILSAEITKIQGKKPNKS-DMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +L+ ++ KI+  +P  +  +S    L   I  E    + + T HA    ++ +F +E  
Sbjct: 78  -LLAQKLAKIEFGQPFSTLKISIQSELRTRIYREVIKEIWIGTFHALFARLL-RFDIEKY 135

Query: 153 I-------TSHFAIADEEQSKKLIEE 171
           +       T HF+I DE+ +  LI+E
Sbjct: 136 VDKEGLKWTRHFSIYDEKDALSLIKE 161


>gi|323526768|ref|YP_004228921.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323383770|gb|ADX55861.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 787

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMSRL 72


>gi|313906068|ref|ZP_07839420.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
 gi|313469113|gb|EFR64463.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
          Length = 653

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A  GSGKT ++  R  +L+     PS++L +T T+AAAA+M  R L++
Sbjct: 20 VLAGPGSGKTAVITGRTAQLIQNGISPSSILVVTFTRAAAAQMKGRFLKM 69


>gi|296532031|ref|ZP_06894810.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC
          49957]
 gi|296267646|gb|EFH13492.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC
          49957]
          Length = 634

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72
          +D ++  +   +LA  P     V A AGSGKT  L +RV  L+L     P  LLC+T T 
Sbjct: 6  LDGLNPAQRAAVLAEAPV---LVLAGAGSGKTETLTRRVADLILRRGEAPDRLLCITFTT 62

Query: 73 AAAAEMSHRV 82
           AAAEM  R+
Sbjct: 63 KAAAEMRTRL 72


>gi|294141179|ref|YP_003557157.1| exodeoxyribonuclease V subunit beta [Shewanella violacea DSS12]
 gi|293327648|dbj|BAJ02379.1| exodeoxyribonuclease V, beta subunit [Shewanella violacea DSS12]
          Length = 1230

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 18/144 (12%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVL-EII 86
           S  + A+AG+GKT+ +    +RLLL +     L C     +T T AA  E+  R+  +I 
Sbjct: 22  SRLIEASAGTGKTYTIAGLYVRLLLGHGIDKPLTCQQILVVTFTNAATGELRDRIRNKIQ 81

Query: 87  TAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
            A+ H       DE+L++    +    P +S    A   L   L++     + TIH FC+
Sbjct: 82  LAYRHFIGIDTGDELLAS----LHSATP-ESARPLALKRLDLALKSLDEASIFTIHGFCQ 136

Query: 142 AIMQQFPLEANI--TSHFAIADEE 163
            I+     E+++   S F + D E
Sbjct: 137 RILADMAFESSLLFESEFTLDDSE 160


>gi|237744963|ref|ZP_04575444.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1]
 gi|229432192|gb|EEO42404.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1]
          Length = 735

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 39/155 (25%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV E+
Sbjct: 15  ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERVEEL 74

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +                          D++KA               + T H+F   +++
Sbjct: 75  V-------------------------GDVAKA-------------CTISTFHSFGMRLLR 96

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            +  E    S+F I D +  K++++   K    SI
Sbjct: 97  MYGKEVGYNSNFTIYDTDDQKRIVKAILKGQNLSI 131


>gi|256028421|ref|ZP_05442255.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11]
          Length = 737

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 39/155 (25%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV E+
Sbjct: 17  ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERVEEL 76

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +                          D++KA               + T H+F   +++
Sbjct: 77  V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 98

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            +  E    S+F I D +  K++++   K    SI
Sbjct: 99  MYGKEVGYNSNFTIYDTDDQKRIVKAILKGQNLSI 133


>gi|168069914|ref|XP_001786623.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660850|gb|EDQ48563.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 25/115 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+A AGSGKT +LV+R++R +L      +   LL  T TKAAAAEM  R+ + +      
Sbjct: 193 VAAAAGSGKTAVLVERIIRKILNEEQGFSVDRLLVATFTKAAAAEMRERIRDAL------ 246

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            D  L         K P  + + +   LL       G   + T+H+FC  ++++ 
Sbjct: 247 -DRQLE--------KDPENTHLRRQLSLL-------GRASITTLHSFCLEVIRRL 285


>gi|139474037|ref|YP_001128753.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes str. Manfredo]
 gi|251764552|sp|A2RFA8|ADDA_STRPG RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|134272284|emb|CAM30537.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes str. Manfredo]
          Length = 1210

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 46  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 99

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 100 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 146

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 147 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 177


>gi|91217344|ref|ZP_01254304.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755]
 gi|91184452|gb|EAS70835.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755]
          Length = 772

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          + I  +++ + E +L  D      V A AGSGKT +L  R+  L+        +L LT T
Sbjct: 3  DYIKQLNEAQREAVLQKDG--PMIVIAGAGSGKTRVLTYRIAYLMSEGVDSFNILALTFT 60

Query: 72 KAAAAEMSHRVLEIITA 88
            AA EM +R+ +I+ A
Sbjct: 61 NKAAKEMKNRISKIVGA 77


>gi|296327497|ref|ZP_06870043.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155323|gb|EFG96094.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 739

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 39/145 (26%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AG+GKT  +  R+  ++      P ++L +T T  AA EM  RV   
Sbjct: 19  ASQIDGSILILAGAGAGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERV--- 75

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                    E L  +I K+                            + T H+F   +++
Sbjct: 76  ---------EDLVGDIAKV--------------------------CTISTFHSFGMRLLR 100

Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170
            +  EA   S+F I D +  KK+++
Sbjct: 101 MYAKEAGYNSNFTIYDTDDQKKIVK 125


>gi|291286461|ref|YP_003503277.1| exodeoxyribonuclease V, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883621|gb|ADD67321.1| exodeoxyribonuclease V, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1149

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 15/137 (10%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA---- 75
           K  +LL +  T ++ + ANAG+GKT+ +     R++    +P  ++L +T+T AA     
Sbjct: 4   KQMELLTAPLTGTSLIEANAGTGKTYNITALFTRMVTELQYPVESILVVTYTNAAVSDLK 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP------NKSDMSKARHLLITILETPG 129
           A++  R+ +++ A   L D   S EIT ++ + P       K +++K   LL   +    
Sbjct: 64  AKIYKRLNDVLLAMVSLRD---SVEIT-MEDEFPLDYALKRKENLTKDIKLLKGAVRDFD 119

Query: 130 GLKVQTIHAFCEAIMQQ 146
              + TIH FC+ ++++
Sbjct: 120 QCAIFTIHGFCQRMLKE 136


>gi|326203600|ref|ZP_08193464.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
 gi|325986420|gb|EGD47252.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
          Length = 695

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          A  GSGKT ++V RV  L+ +  +P ++L LT  KAA  EM  R
Sbjct: 32 AGPGSGKTTVIVNRVYNLIKSGINPKSILTLTFNKAAQLEMDRR 75


>gi|298530797|ref|ZP_07018199.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510171|gb|EFI34075.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 713

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 39/161 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID        QL A   TR    V A AGSGKT  +V R+  L+     P ++L LT T+
Sbjct: 2   IDYEKSLNPAQLEAVTTTRGPVLVIAGAGSGKTRTIVYRLAYLVEQGVPPESILLLTFTR 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA++M  R           + E+L+ E+  + G                          
Sbjct: 62  KAASQMLRR-----------AGELLNREMGMVSGG------------------------- 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
             T H F   I+++F         F++ D   +++L +  +
Sbjct: 86  --TFHGFSYMILKKFAPALGFPQGFSVMDAADAEELFKGVR 124


>gi|21910050|ref|NP_664318.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes MGAS315]
 gi|81479324|sp|Q8K815|ADDA_STRP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|21904241|gb|AAM79121.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes MGAS315]
          Length = 1222

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|315608146|ref|ZP_07883138.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574]
 gi|315250115|gb|EFU30112.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574]
          Length = 819

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 43/188 (22%)

Query: 14  IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL+S+    Q  A +     + V A AGSGKT +L  ++  LL     P  +L LT T 
Sbjct: 2   VDLLSELNDSQREAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLQRGVRPYNILALTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++     L+                                     L+
Sbjct: 62  KAATEMKARIGKLVGERDALA-------------------------------------LR 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    I++         S+F I DE  S+ LI+   K   A      NE++ +  
Sbjct: 85  MGTFHSVFSRILRVEAAHIGYNSNFTIYDESDSRSLIKTIVKELAAG-----NEKMDEKQ 139

Query: 193 YEILEISN 200
           Y+   + N
Sbjct: 140 YKSATVHN 147


>gi|312898542|ref|ZP_07757932.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis
          F0359]
 gi|310620461|gb|EFQ04031.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis
          F0359]
          Length = 738

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          D +++ + E ++ ++   S  V+A AGSGKT +L  R+ RLL     P  +L +T T  A
Sbjct: 12 DTLNERQLEAVMHTEGPLS--VTAGAGSGKTKVLTCRIARLLEIGTDPYRILAITFTNKA 69

Query: 75 AAEMSHRVLEII 86
          A EM  RV  ++
Sbjct: 70 AKEMRERVQNLV 81


>gi|256824633|ref|YP_003148593.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547]
 gi|256688026|gb|ACV05828.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547]
          Length = 831

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL     HP  +L +T T  AAAEM  RV  ++        
Sbjct: 93  IIAGAGSGKTRVLTHRIAHLLRHRGVHPGQILAITFTNKAAAEMRERVEALVGP------ 146

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P ++                  + V T H+ C  I+++      + 
Sbjct: 147 --------------PARA------------------MWVSTFHSACVRILRREAKTVGLR 174

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   S++LI
Sbjct: 175 STFSIYDAADSQRLI 189


>gi|207723734|ref|YP_002254132.1| dna helicase II (partial sequence) protein [Ralstonia
          solanacearum MolK2]
 gi|206588938|emb|CAQ35900.1| probable dna helicase II (partial sequence) protein [Ralstonia
          solanacearum MolK2]
          Length = 807

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P  SA + A AGSGKT +L  R+  L+ ++   PS +L +T T 
Sbjct: 3  DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSSRVSPSGVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM+ R+
Sbjct: 63 KAAKEMTARL 72


>gi|149189144|ref|ZP_01867432.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1]
 gi|148837107|gb|EDL54056.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1]
          Length = 1205

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 33/177 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-------HPST---LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +         P T   +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGSDQSRHKQPLTVDQILVVTFTEAATAELRDRI--- 79

Query: 86  ITAWSHLSDEILSAEITKIQGK------KPNKSDMSKARHLLITILETPGGLK---VQTI 136
                     I  A I   +G       KP  +D++  R  + T+L+    +    V TI
Sbjct: 80  -------RARIHQARIAFARGDSDDPVIKPLLNDITDHRFAVDTLLQAERQMDEAAVYTI 132

Query: 137 HAFCEAIMQQFPLEAN--ITSHFAIADEEQSK-KLIEEAKKSTLASIMLDNNEELKK 190
           H FC+ ++ Q   E+     + F I DE + K +++ +  +S    + L+   E++K
Sbjct: 133 HGFCQRMLTQNAFESGSRFNNEF-ITDESRLKAQVVADFWRSQFYPLGLELASEVRK 188


>gi|325281708|ref|YP_004254250.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
 gi|324313517|gb|ADY34070.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
          Length = 756

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + V A AGSGKT +L  R+ +LL        +L LT T  AA EM  R+ E++
Sbjct: 22 SLVIAGAGSGKTRVLTYRIAQLLSQGVPAYKILALTFTNKAAREMQKRIAELV 74


>gi|261868104|ref|YP_003256026.1| exodeoxyribonuclease V subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413436|gb|ACX82807.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 1221

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 15/143 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEII- 86
           + A+AG+GKT+ +    LRLLL    NA P  L     L +T T+ A  E+  ++ E I 
Sbjct: 17  IEASAGTGKTYTMGSLYLRLLLQAGENAFPHVLNVEQILVVTFTEMATEELKRKIRERIY 76

Query: 87  ------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                 TA+    D  +  +   ++    + +D   A   L    +      + TIH FC
Sbjct: 77  DAKQKLTAYQQTQDSAVFEQDEFLRQLADSITDFPLAIQRLTLAEQNMDLAAIYTIHGFC 136

Query: 141 EAIMQQFPLEANITSHFAIADEE 163
             ++ Q+   + I  +  ++ EE
Sbjct: 137 RRMLMQYAFNSGIHFNLELSGEE 159


>gi|261337676|ref|ZP_05965560.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM
           20093]
 gi|270277115|gb|EFA22969.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM
           20093]
          Length = 1406

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 45/189 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+E+  RV    T   H  D 
Sbjct: 24  VVAGAGSGKTYTMTERIIHLIDQGVPPQHILGLTFTRKAASELLQRVTSAYTKSLHADDT 83

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             +A   K +                           V T  AF + I++++ L      
Sbjct: 84  SNAARFMKPE---------------------------VLTYDAFFQGIVRRYGL------ 110

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE-DIETLISDI--I 212
              +   +Q+ + + EA    L S ++D N +      ++LE S D     T+++D+  +
Sbjct: 111 ---LVGFDQNVQPLSEAGAHQLISDVVDANMQ------QVLEASKDYGSFSTMVNDVYAL 161

Query: 213 SNRTALKLI 221
           SN  A  +I
Sbjct: 162 SNNIASSMI 170


>gi|224372404|ref|YP_002606776.1| putative recombination protein RecB [Nautilia profundicola AmH]
 gi|223588940|gb|ACM92676.1| helicase [Nautilia profundicola AmH]
          Length = 878

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL    +PS++L +T T  AA EM  RV++    +  L  E
Sbjct: 7   LKASAGSGKTFSLALRYLALLFRGVNPSSILAVTFTNKAANEMKERVIK----FLDLLKE 62

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                         N+ ++ K R  ++    T   + + TI AF + ++++F     +  
Sbjct: 63  DEELLEILCGTSGLNEKEILKKREFVLKEFLT-SDIHITTIDAFIQKVLRKFGYYVGVDV 121

Query: 156 HFAIADE 162
            F I  +
Sbjct: 122 DFDIKSD 128


>gi|223040190|ref|ZP_03610469.1| acyl carrier protein [Campylobacter rectus RM3267]
 gi|222878551|gb|EEF13653.1| acyl carrier protein [Campylobacter rectus RM3267]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ  A+  P     V A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3  LSKLNQEQYAAATAPAGHNLVIASAGTGKTSTIVARIAHLLNLGVKPEKILLLTFTNKAA 62

Query: 76 AEMSHRV 82
          AEM  R+
Sbjct: 63 AEMIERL 69


>gi|114563702|ref|YP_751215.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina
           NCIMB 400]
 gi|114334995|gb|ABI72377.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina
           NCIMB 400]
          Length = 1276

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 8/139 (5%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S+ + A+AG+GKT+ +    LRLLL +   + L C     +T T AA  E+  R+ + I 
Sbjct: 19  SSLIEASAGTGKTYTISGLYLRLLLGHGGKAPLSCEQILVVTFTNAATEELRDRIRKRIN 78

Query: 88  -AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A+       ++ E  +   +  ++ +   A   L   L++     + TIHAFC+ ++  
Sbjct: 79  LAFKRFLGLAVNDEFIEQLYQDTSEDERPIALRRLDLALKSLDEAAIFTIHAFCQRVLSD 138

Query: 147 FPLEANI--TSHFAIADEE 163
              E+++   S F + D E
Sbjct: 139 MAFESSLLFESEFTLDDSE 157


>gi|296111905|ref|YP_003622287.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU
          11154]
 gi|295833437|gb|ADG41318.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU
          11154]
          Length = 1241

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V+A+AGSGKT +L++R+++ +LA       L +T T AAA EM  R LEI
Sbjct: 22 VAASAGSGKTTVLIERLIQKILAGTSVENFLIVTFTHAAANEMRER-LEI 70


>gi|330816643|ref|YP_004360348.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3]
 gi|327369036|gb|AEA60392.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3]
          Length = 789

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGFASPPTVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMLSRL 72


>gi|296158133|ref|ZP_06840965.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295891469|gb|EFG71255.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 783

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMSRL 72


>gi|269128418|ref|YP_003301788.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183]
 gi|268313376|gb|ACY99750.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183]
          Length = 768

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL   + HP+ +L +T T  AA EM  RV  ++   S    
Sbjct: 31  IVAGAGSGKTRVLTHRIAYLLAERDVHPAQILAITFTNKAAGEMRERVQALVGPRS---- 86

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                             G + V T H+ C  I+++        
Sbjct: 87  ----------------------------------GAMWVMTFHSACVRILRREARRLGFP 112

Query: 155 SHFAIADEEQSKKLI 169
           S+F+I D   +++L+
Sbjct: 113 SNFSIYDAADAQRLM 127


>gi|91784462|ref|YP_559668.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400]
 gi|91688416|gb|ABE31616.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400]
          Length = 783

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMSRL 72


>gi|262202649|ref|YP_003273857.1| exodeoxyribonuclease V [Gordonia bronchialis DSM 43247]
 gi|262085996|gb|ACY21964.1| Exodeoxyribonuclease V [Gordonia bronchialis DSM 43247]
          Length = 1134

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 14/156 (8%)

Query: 26  LASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           +A D P ++  + A+AG+GKT+ +V    R L      S +L +T ++AA AE+  R+ E
Sbjct: 13  IAEDLPAQTTVLEASAGTGKTYAIVSLAARYLAEGVPISGMLLVTFSRAATAELRERMRE 72

Query: 85  IITAWSHLSDEILSAEITKIQGKK----PNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            +     +  +  SA  +  Q  +        D+++ R  L+  L       + T H FC
Sbjct: 73  RVHGLVGVLADPASAAQSADQLHRLLAAGTAEDVARRRAHLVRALSDFDASTIATTHTFC 132

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             +++             + + E   +++EE  + T
Sbjct: 133 NRMLEALGF---------LGEREMVYRIVEEVDELT 159


>gi|81300977|ref|YP_401185.1| ATP-dependent DNA helicase Rep [Synechococcus elongatus PCC 7942]
 gi|81169858|gb|ABB58198.1| ATP-dependent DNA helicase, Rep family [Synechococcus elongatus PCC
           7942]
          Length = 794

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +SQ  + Q  A +  +    V A AGSGKT  L  R+  LL  +   P  +L +T T 
Sbjct: 4   DFLSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVDPENILAVTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGG 130
            AA EM  R+           + + + ++ ++Q  +P  +  ++ K +       E    
Sbjct: 64  KAAKEMKERL-----------ERLFAQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKD 112

Query: 131 LKVQTIHAFCEAIMQQFPLEA-------NITSHFAIADEEQSKKLIEE 171
           L + T HA C  I+ +F ++          T  F+I DE   + LI+E
Sbjct: 113 LWIGTFHAICARIL-RFDIDKYCDPNGRRWTKQFSIFDENDVQGLIKE 159


>gi|87311977|ref|ZP_01094086.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
 gi|87285281|gb|EAQ77206.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
          Length = 701

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT ++  R+  L+     PS +L +T T  AAAEM  R L ++
Sbjct: 58  VLAGAGSGKTRVVTFRIANLIKHGVRPSRILAVTFTNKAAAEMRERALGLL 108


>gi|225010263|ref|ZP_03700735.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
 gi|225005742|gb|EEG43692.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
          Length = 1043

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 37  SANAGSGKTHILVQRVLRLLLA-NAHPST--LLCLTHTKAAAAEMSHRVLEIITAWS--- 90
           +A+AGSGKT+ L +  L+L+LA NAH +   +L LT T  A  EM  R+L  +  +S   
Sbjct: 17  NASAGSGKTYTLTKVYLKLILAPNAHNNFGHILALTFTNKAVNEMKERILTGLADFSLTP 76

Query: 91  -HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                E L +++ K  G    +    K+  +L+ +L      +V TI  F   +++ F  
Sbjct: 77  CPKKSEALFSDVVKELGCS-REVLQKKSEKVLMQLLHNYAFFEVSTIDKFNHRLIRTFAK 135

Query: 150 EANITSHFAI 159
           +  +  +F +
Sbjct: 136 DLKLPQNFEV 145


>gi|188587404|ref|YP_001918949.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352091|gb|ACB86361.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 754

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 37/133 (27%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AG+GKT  LV RV  LL +   P  +L LT T+ AA EM  RV +++   S  +D I 
Sbjct: 137 AGAGTGKTRTLVYRVSYLLESGIPPQEILLLTFTRKAAREMLERVKKLLGTES--TDRI- 193

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                                          GG    T H+F   +++++     ++  F
Sbjct: 194 ------------------------------KGG----TFHSFANNVLRRYSGLVGLSPDF 219

Query: 158 AIADEEQSKKLIE 170
           ++ D+  S+ +++
Sbjct: 220 SVLDQIDSQDVVD 232


>gi|299069674|emb|CBJ40950.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
          solanacearum CMR15]
          Length = 710

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 9  EHSETIDLISQTKSEQLLA-----SDP----TRSAWVSANAGSGKTHILVQRVLRLLLAN 59
          E +   D ++Q   +Q LA     S P    T    V A AGSGKTH L  RV  L+   
Sbjct: 9  ETAPAPDYLAQLNDQQRLAVEFGISGPDAAQTGPLLVLAGAGSGKTHTLGWRVAHLVANG 68

Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A P  +L LT ++ AA+E+S R   ++
Sbjct: 69 ADPQRILLLTFSRRAASELSSRAGHLL 95


>gi|15835512|ref|NP_297271.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
 gi|270285695|ref|ZP_06195089.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
 gi|270289703|ref|ZP_06196005.1| ATP-dependent helicase PcrA [Chlamydia muridarum Weiss]
 gi|301337090|ref|ZP_07225292.1| ATP-dependent helicase PcrA [Chlamydia muridarum MopnTet14]
 gi|7190926|gb|AAF39692.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
          Length = 634

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 42/171 (24%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  A   PS +L +T T  
Sbjct: 2   LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVSHRILYLIEEAQLDPSQILAITFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E++ RVL                     Q   P+                  G   V
Sbjct: 62  AAKELNERVL--------------------TQCNFPDYR----------------GIPMV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
            T H+    I+++     +  S+FAI D+  S+KLI    K  L  + LDN
Sbjct: 86  STFHSLGVYILRRSIQLLDRQSNFAIYDQSDSEKLI----KQCLRKLNLDN 132


>gi|50913958|ref|YP_059930.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394]
 gi|81602230|sp|Q5XCW6|ADDA_STRP6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|50903032|gb|AAT86747.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394]
          Length = 1222

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|19745861|ref|NP_606997.1| putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes MGAS8232]
 gi|81632923|sp|Q8P1J2|ADDA_STRP8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|19748011|gb|AAL97496.1| putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes MGAS8232]
          Length = 1222

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|89070230|ref|ZP_01157554.1| helicase IV [Oceanicola granulosus HTCC2516]
 gi|89044150|gb|EAR50308.1| helicase IV [Oceanicola granulosus HTCC2516]
          Length = 919

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 28/193 (14%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
           +T++ +  T  ++L       +  V A AGSGKT ++  +   L+ A    PS LL L  
Sbjct: 133 DTVESMPLTPEQRLAVVIDEDATLVLAGAGSGKTSVITAKAAYLVKAGIREPSELLLLAF 192

Query: 71  TKAAAAEMSHR------VLEIITAWSHLSDEILSAEITKIQGKKP--------NKSDMSK 116
            K AA EMS R      V      +  L+ EI    I +++G+KP        +K+ +S 
Sbjct: 193 AKDAATEMSERFEAKCGVAVAARTFHALAYEI----IGEVEGEKPPLAPTATDDKAFLSL 248

Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKS 175
            + +L  I+ T   +  QT+  +      +FP E +  T H   A        IE     
Sbjct: 249 VKEILRHIVATASEV-AQTVIGWFAGFFDEFPTEWDFKTKHHWYAQ-------IESRNLR 300

Query: 176 TLASIMLDNNEEL 188
           TL    ++  EEL
Sbjct: 301 TLQGETVNGFEEL 313


>gi|282880688|ref|ZP_06289390.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305414|gb|EFA97472.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 1076

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 4/146 (2%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA 88
           P+      A+AGSGKT  L    +++++ N +    +L +T T  A  EM  R+L  +  
Sbjct: 6   PSSLTISKASAGSGKTFKLATEYIKIVIDNPYAYRNILAVTFTNKATEEMKIRILSQLYG 65

Query: 89  WSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            +H LSD     +  K      +K    +A   L  +L      +V+TI +F +++++  
Sbjct: 66  IAHGLSDSESYLQEVKKALDLSDKQISERAEKALDLLLHNYSYFRVETIDSFFQSVLRNL 125

Query: 148 PLEANITSHFAIA--DEEQSKKLIEE 171
             E ++T++  I   D+E  +K +++
Sbjct: 126 ARELDLTANLRIELNDKEIQEKAVDQ 151


>gi|260592504|ref|ZP_05857962.1| putative UvrD/REP helicase domain protein [Prevotella veroralis
           F0319]
 gi|260535550|gb|EEX18167.1| putative UvrD/REP helicase domain protein [Prevotella veroralis
           F0319]
          Length = 1098

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    + L++ N    S +L +T T  A  EM  R+L  +   +H L + 
Sbjct: 10  ASAGSGKTFTLASEYITLVVKNPQDYSRILAVTFTNKATQEMKMRILTQLYGIAHSLKES 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E  + +   P  +    A   L  +       +V TI AF +AI++    E N+T+
Sbjct: 70  QPYFEQVQTKTDLPEITIRENAAEALSLLTHHYNYFRVLTIDAFFQAILRNLARELNLTA 129

Query: 156 HFAI 159
           +  I
Sbjct: 130 NLRI 133


>gi|240172870|ref|ZP_04751529.1| putative ATP dependent dna helicase [Mycobacterium kansasii ATCC
           12478]
          Length = 768

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++ A      
Sbjct: 36  IVAGAGSGKTAVLTRRIAYLIAARGVAVGQILAITFTNKAAAEMRERVVRLVGA------ 89

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                +AR++ ++           T H+ C  I++ Q  L   +
Sbjct: 90  ---------------------RARYMWVS-----------TFHSTCVRILRNQASLIEGL 117

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 118 NSNFSIYDADDSRRLLQ 134


>gi|148978468|ref|ZP_01814942.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3]
 gi|145962375|gb|EDK27655.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3]
          Length = 724

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L  +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++   S                                       G+ 
Sbjct: 66  KAAAEMRGRIEELMMGSSS--------------------------------------GMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  I++   L+A +   F I D +   +L+
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL 124


>gi|29346464|ref|NP_809967.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338360|gb|AAO76161.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1057

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I  + KK  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETKKTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|255322232|ref|ZP_05363378.1| acyl carrier protein [Campylobacter showae RM3277]
 gi|255300605|gb|EET79876.1| acyl carrier protein [Campylobacter showae RM3277]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ  A+  P     V A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3  LSKLNQEQYAAATAPAGHNLVIASAGTGKTSTIVARIAHLLNLGVKPEKILLLTFTNKAA 62

Query: 76 AEMSHRV 82
          AEM  R+
Sbjct: 63 AEMIERL 69


>gi|170782918|ref|YP_001711252.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157488|emb|CAQ02679.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 815

 Score = 45.1 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 39/147 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+ +  A PS +L +T T  AAAEM  RV  ++   S    
Sbjct: 55  VVAGAGSGKTRVLTHRIASLIESREAWPSQILAITFTNKAAAEMRERVESLLGQASE--- 111

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                              G+ + T H+ C  I+++       T
Sbjct: 112 -----------------------------------GMWISTFHSACVRILRREAEAFGFT 136

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIM 181
            +F I D   S+ LI+   K   A  +
Sbjct: 137 QNFTIYDSADSRVLIKRIIKQLDADTL 163


>gi|157738288|ref|YP_001490972.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri RM4018]
 gi|157700142|gb|ABV68302.1| ATP-dependent DNA helicase, UvrD/PcrA family [Arcobacter butzleri
          RM4018]
          Length = 684

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          LIS   S+++ A        + A AGSGKT  +  R+  L+     PS++L LT T  AA
Sbjct: 6  LISLNDSQKIAAQHVDGPLLILAGAGSGKTKTITTRLAFLISIGIDPSSILTLTFTNKAA 65

Query: 76 AEMSHRVLEIITA 88
           EM  R   ++ +
Sbjct: 66 TEMRERAFSLLDS 78


>gi|19703927|ref|NP_603489.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714099|gb|AAL94788.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 735

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 39/149 (26%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV E++     
Sbjct: 21  SILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERVEELV----- 75

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                                D++KA               + T H+F   +++ +  E 
Sbjct: 76  --------------------GDVAKA-------------CTISTFHSFGMRLLRMYGKEV 102

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASI 180
              S+F I D +  K++++   K    SI
Sbjct: 103 GYNSNFTIYDTDDQKRIVKAILKGQNLSI 131


>gi|323490411|ref|ZP_08095623.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2]
 gi|323395910|gb|EGA88744.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2]
          Length = 737

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          +L++    EQ  A   T     + A AGSGKT +L  R+  L+L    +PS +L +T T 
Sbjct: 7  NLLNGMNPEQAEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVLEKQVYPSNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM +R+
Sbjct: 67 KAAREMRNRI 76


>gi|315636579|ref|ZP_07891813.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri
          JV22]
 gi|315479088|gb|EFU69787.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri
          JV22]
          Length = 684

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          LIS   S+++ A        + A AGSGKT  +  R+  L+     PS++L LT T  AA
Sbjct: 6  LISLNDSQKIAAQHVDGPLLILAGAGSGKTKTITTRLAFLISIGIDPSSILTLTFTNKAA 65

Query: 76 AEMSHRVLEIITA 88
           EM  R   ++ +
Sbjct: 66 TEMRERAFSLLDS 78


>gi|329945395|ref|ZP_08293158.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529017|gb|EGF55948.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 974

 Score = 45.1 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 52/160 (32%)

Query: 22  SEQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +E L   +P + A V+         A AGSGKT +L  R+  L+    A P  +L +T T
Sbjct: 118 AELLSGLNPAQEAAVTHVGAPLLIIAGAGSGKTRVLTHRIAHLIATGRARPGEILAITFT 177

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV                                        T L  P G 
Sbjct: 178 NKAAAEMRERV----------------------------------------TALVGPAGE 197

Query: 132 K--VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +  V T H+ C  I+++    A + S F+I D   S +LI
Sbjct: 198 RMWVSTFHSACVRILRREHEAAGLRSTFSIYDAADSTRLI 237


>gi|84393655|ref|ZP_00992406.1| DNA helicase II [Vibrio splendidus 12B01]
 gi|84375723|gb|EAP92619.1| DNA helicase II [Vibrio splendidus 12B01]
          Length = 724

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L  +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++   S                                       G+ 
Sbjct: 66  KAAAEMRGRIEELMMGSSS--------------------------------------GMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  I++   L+A +   F I D +   +L+
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL 124


>gi|239905341|ref|YP_002952080.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239795205|dbj|BAH74194.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 739

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +D  ++    QL A   T     V A AGSGKT  +V R+  L+L    P+++L LT T+
Sbjct: 1  MDCTNELNPAQLEAVSTTEGPVLVIAGAGSGKTRTIVYRLAHLVLKGVEPASILLLTFTR 60

Query: 73 AAAAEMSHR 81
           AA EM  R
Sbjct: 61 KAAQEMLTR 69


>gi|167748929|ref|ZP_02421056.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662]
 gi|167651551|gb|EDR95680.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662]
          Length = 618

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A  GSGKT ++ +R   L+      PS +L +T TKAAAAEM  R L++
Sbjct: 21 VLAGPGSGKTTVITERTKYLIEHCGVKPSNILVITFTKAAAAEMKERFLKL 71


>gi|187924773|ref|YP_001896415.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187715967|gb|ACD17191.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 783

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMSRL 72


>gi|56751936|ref|YP_172637.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
 gi|56686895|dbj|BAD80117.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
          Length = 794

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +SQ  + Q  A +  +    V A AGSGKT  L  R+  LL  +   P  +L +T T 
Sbjct: 4   DFLSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVGPENILAVTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGG 130
            AA EM  R+           + + + ++ ++Q  +P  +  ++ K +       E    
Sbjct: 64  KAAKEMKERL-----------ERLFAQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKD 112

Query: 131 LKVQTIHAFCEAIMQQFPLEA-------NITSHFAIADEEQSKKLIEE 171
           L + T HA C  I+ +F ++          T  F+I DE   + LI+E
Sbjct: 113 LWIGTFHAICARIL-RFDIDKYCDPNGRRWTKQFSIFDENDVQGLIKE 159


>gi|221134097|ref|ZP_03560402.1| DNA helicase II [Glaciecola sp. HTCC2999]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 44/208 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79
           K  Q +A+ P +   + A AGSGKT +LV R+  L+ + N  P ++L +T T  AA EM 
Sbjct: 13  KQRQAVAA-PAQDMLILAGAGSGKTRVLVHRIAWLMEVENLSPFSILAVTFTNKAAREMR 71

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ ++     H                           H+ I            T H  
Sbjct: 72  GRIEQLKGQSLH---------------------------HMWIG-----------TFHGL 93

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              +++    EAN+  +F I D +   +LI    K  + S+ LD  +   K     +  +
Sbjct: 94  AHRLLRAHYAEANLPENFTILDSDDQHRLI----KRIIKSMNLDEKDWPAKQSQWYINGN 149

Query: 200 NDEDIETLISDIISNRTALKLIFFFFSY 227
            DE +     D   +    K+   + +Y
Sbjct: 150 KDEGLRPKDIDTYGDANQQKMRDIYQAY 177


>gi|94500333|ref|ZP_01306866.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65]
 gi|94427632|gb|EAT12609.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65]
          Length = 1184

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 69/136 (50%), Gaps = 11/136 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA----HPSTLLCLTHTKAAAAEMSHRVL-EIITAWS 90
           + A+AG+GKT  +    LRL+L +      P  +L +T TKAA  E+  R+   +  A++
Sbjct: 19  IEASAGTGKTFTIAALYLRLVLGHGCNPISPENILVVTFTKAATEELRGRIRNRLRQAYN 78

Query: 91  HL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            +   DE L   +  +  +  + S + + +   + I++      + TIH F + ++ Q+ 
Sbjct: 79  AIQTQDESLDPFVFSLLKELDHTSALERLKD-AVQIMDIAA---IYTIHGFAQKVLSQYS 134

Query: 149 LEANITSHFAIADEEQ 164
           +E+++   F +  ++Q
Sbjct: 135 VESHVDDEFELILDQQ 150


>gi|238027765|ref|YP_002911996.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1]
 gi|237876959|gb|ACR29292.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1]
          Length = 789

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPPTVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMLSRL 72


>gi|225351772|ref|ZP_03742795.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158116|gb|EEG71399.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1377

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 35/157 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+E+  RV             
Sbjct: 27  VVAGAGSGKTYTMTRRIITLIEQGVSPEKILGLTFTRKAASELLSRV------------- 73

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             SA +T+ Q ++  KS         +T L+     +V T  AF ++I++Q+ L      
Sbjct: 74  --SAAVTRDQRERGLKSAN-------MTFLKP----EVSTYDAFFQSIVRQYGL------ 114

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
              +   +Q+ + + EA    L   +LD + +   AF
Sbjct: 115 ---LVGFDQNTQPLSEAGAMQLIHTVLDRHMDDLMAF 148


>gi|117619159|ref|YP_854747.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560566|gb|ABK37514.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 723

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 43/186 (23%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ +    P +++ +T T  AAAEM  RV ++I  
Sbjct: 21  PRCNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVI-- 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                D +                                 G+ + T H     +++   
Sbjct: 79  ----GDGVR--------------------------------GMWIGTFHGIAHRLLRAHH 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
           L+A +   F I D +   +LI    +  L ++ LD      +A    +    DE +    
Sbjct: 103 LDAGLPQDFQILDSDDQYRLI----RRVLKALNLDEKHWAPRAVMGYINGKKDEGLRPGD 158

Query: 209 SDIISN 214
            D+  +
Sbjct: 159 IDLYGD 164


>gi|319791429|ref|YP_004153069.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315593892|gb|ADU34958.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 704

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  ++ RL+ A   P  +  +T T  AAAEM  R  ++I
Sbjct: 22 VLAGAGSGKTRVITHKIGRLIQAGLEPKRIAAITFTNKAAAEMRERAKDLI 72


>gi|209559149|ref|YP_002285621.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes NZ131]
 gi|251764566|sp|B5XKR4|ADDA_STRPZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|209540350|gb|ACI60926.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes NZ131]
          Length = 1222

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189


>gi|119964268|ref|YP_946829.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1]
 gi|119951127|gb|ABM10038.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1]
          Length = 848

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+    AH   +L +T T  AAAEM  R+  ++ A      
Sbjct: 93  IVAGAGSGKTRVLSNRIAYLIATKRAHHGEILAITFTNKAAAEMRERIEALVGA------ 146

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                +A+           G+ + T H+ C  I+++      + 
Sbjct: 147 ---------------------RAK-----------GMWISTFHSSCVRILRREAANVGLN 174

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S+F+I D   S +LI    K+
Sbjct: 175 SNFSIYDSADSLRLITLVAKN 195


>gi|86148257|ref|ZP_01066553.1| DNA helicase II [Vibrio sp. MED222]
 gi|218710970|ref|YP_002418591.1| DNA-dependent helicase II [Vibrio splendidus LGP32]
 gi|85833953|gb|EAQ52115.1| DNA helicase II [Vibrio sp. MED222]
 gi|218323989|emb|CAV20351.1| DNA helicase II [Vibrio splendidus LGP32]
          Length = 724

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  + A AGSGKT +LV R+  L  +  A P +++ +T T 
Sbjct: 8   LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++   S                                       G+ 
Sbjct: 66  KAAAEMRGRIEELMMGSSS--------------------------------------GMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  I++   L+A +   F I D +   +L+
Sbjct: 88  NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL 124


>gi|313900250|ref|ZP_07833746.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2]
 gi|312954959|gb|EFR36631.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2]
          Length = 1069

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 22/114 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           VSA+AGSGKT +L+ R++ L++ + H S  ++L +T T+AAA EM  R            
Sbjct: 21  VSASAGSGKTTVLIARLMDLVMKD-HVSIDSILAMTFTEAAANEMKKR------------ 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
              L+ E+ K       + + S     L  I        + TIH+FC +I+Q++
Sbjct: 68  ---LATELQKALTAARTEEEKSYITRQLTGIQTA----HISTIHSFCLSIIQEY 114


>gi|154509554|ref|ZP_02045196.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799188|gb|EDN81608.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC
           17982]
          Length = 1142

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 30/159 (18%)

Query: 14  IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTH 70
           +D       EQ+ +   P R   V A AGSGKT  +  RVL LL    +  PS++L LT 
Sbjct: 12  VDATKTPTHEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLSPSSILGLTF 71

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+ AA E+  R+ E I         +LS E+ +++ +                + E P  
Sbjct: 72  TRKAAGELGERLRERI--------RLLSREMPQLRER----------------LDEDPVS 107

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           L   T ++F E I+ +  +   I   F++  E  +  L+
Sbjct: 108 L---TYNSFAERIVSEHGMRIGIDPDFSMLSEAGALDLM 143


>gi|94994076|ref|YP_602174.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750]
 gi|251764562|sp|Q1J7E4|ADDA_STRPF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|94547584|gb|ABF37630.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750]
          Length = 1222

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L S  ++  E
Sbjct: 159 QFRIMQDKAEQGVLKQEVFSKLFSEFMNQKE 189


>gi|332184148|gb|AEE26402.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family, Francisella type
          [Francisella cf. novicida 3523]
          Length = 688

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++++  D T+ A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A  + + R+
Sbjct: 8  QKIINHDITKHALVSAVAGSGKTQTLIARIEYLVSNQVAPNRILVLMYNKSAQLDFATRL 67

Query: 83 LEII 86
           +++
Sbjct: 68 KKVL 71


>gi|295132152|ref|YP_003582828.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87]
 gi|294980167|gb|ADF50632.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87]
          Length = 1040

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  LV+  L LL  +    T   +L +T T  A  EM  R++E + A++   
Sbjct: 9   NASAGSGKTFTLVKSYLSLLFKSGKTDTYKNILAITFTNKAVHEMKTRIVESLYAFTKKP 68

Query: 94  DEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               S  + +   K+   S      K+  +L  I+      +V TI  F   +++ F  +
Sbjct: 69  VPESSKALLEAVAKETAHSKEEIQEKSVAILKNIIHNYAAFEVSTIDGFTHRVLRTFAKD 128

Query: 151 ANITSHFAIADEEQSKKLIEEA 172
             +  +F +  E  + K++ EA
Sbjct: 129 LGLPVNFEV--ELDTDKILNEA 148


>gi|297588277|ref|ZP_06946920.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516]
 gi|297573650|gb|EFH92371.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516]
          Length = 967

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 41/192 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I  + +++L  S   ++  V+A AG+GKT ++ +R   +        +++C+T T  AA
Sbjct: 1   MIKFSDNQKLAYSTIDKNVCVNAGAGTGKTEVVSERFRYMYENGIDIKSIVCITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+++ +     L D+I                                    V T
Sbjct: 61  DEMKDRIIQKLNN-PRLVDDI-----------------------------------NVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC+ I+       +I   F I +++Q+ K+I E     +   +L+N  +  K    +
Sbjct: 85  ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKMINE-----IFDKILENRIDFIKKLGNV 139

Query: 196 LEISNDEDIETL 207
           L+IS  + ++ +
Sbjct: 140 LDISYTDTLKII 151


>gi|160914774|ref|ZP_02076988.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991]
 gi|158433314|gb|EDP11603.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991]
          Length = 1080

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 22/114 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVL-EIITAWSHLS 93
           VSA+AGSGKT +L+ R++ L++ +      +C +T T+AAA EM  R+  E+  A++   
Sbjct: 32  VSASAGSGKTTVLIARLMDLVMKDHISIDEICAMTFTEAAANEMKKRLASELQKAYAAAQ 91

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                A ITK                  +T L+T     + TIH+FC +I+Q++
Sbjct: 92  SMEEKAFITK-----------------QLTNLQTA---HISTIHSFCLSIIQKY 125


>gi|325266832|ref|ZP_08133503.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella
           denitrificans ATCC 33394]
 gi|324981573|gb|EGC17214.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella
           denitrificans ATCC 33394]
          Length = 782

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 6   SFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           SF E +    L++    EQL A + P +S  V A AGSGKT +L  R+  LL    A  +
Sbjct: 46  SFSEQNPHFSLLNHLNPEQLSAVTYPAQSVLVLAGAGSGKTRVLTTRIAWLLQNGMAGVN 105

Query: 64  TLLCLTHTKAAAAEMSHRV 82
            +L +T T  AA EM  R+
Sbjct: 106 NILAVTFTNKAAKEMQTRL 124


>gi|229004068|ref|ZP_04161870.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock1-4]
 gi|228757166|gb|EEM06409.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock1-4]
          Length = 687

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ + N HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLINVKNVHPRNILLLTFTQKAAEEIRSRV 115


>gi|46445668|ref|YP_007033.1| ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399309|emb|CAF22758.1| probable ATP-dependent DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 761

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           V A AGSGKT ++  R++ L+     PS +L +T T  AA EM  RV ++
Sbjct: 60  VLAGAGSGKTRVVTSRIVNLIENGISPSNILGVTFTNKAAQEMRERVCKL 109


>gi|292493733|ref|YP_003529172.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
 gi|291582328|gb|ADE16785.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
          Length = 715

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 43/165 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
            K+++   + P     V A AGSGKT +LV R+  L+ +    P +LL +T T  AA EM
Sbjct: 11  NKAQREAVAAPAGHHLVLAGAGSGKTRVLVHRIAWLIRSQGISPFSLLAVTFTNKAAGEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E++                                          GG+ + T H 
Sbjct: 71  RGRIEELLGM--------------------------------------PAGGMWMGTFHG 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
               +++    EA +   F I D E   +LI    +  L ++ LD
Sbjct: 93  LAHRLLRTHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLD 133


>gi|222100309|ref|YP_002534877.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|221572699|gb|ACM23511.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 649

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 38/142 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A  GSGKT ++  ++  LL     PS +L +T T+AAA EM  R  +++T    LS E
Sbjct: 37  VIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTRAAAREMVERA-KMVTG-RELS-E 93

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L+                                    T H  C   ++++     +  
Sbjct: 94  MLAG-----------------------------------TFHHVCNYFLRKYAPYVGLDR 118

Query: 156 HFAIADEEQSKKLIEEAKKSTL 177
           +++I D E S+ L+  A+   L
Sbjct: 119 NYSILDREDSESLMRHARSKFL 140


>gi|163748667|ref|ZP_02155920.1| DNA helicase II [Shewanella benthica KT99]
 gi|161331777|gb|EDQ02581.1| DNA helicase II [Shewanella benthica KT99]
          Length = 721

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 43/158 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  S  V A AGSGKT +L  R+  L+ +    P ++L +T T  AAAEM  RV      
Sbjct: 21  PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAEMRERV------ 74

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                             +K + S+M              G + + T H     +++   
Sbjct: 75  ------------------EKVSGSNM--------------GRMWIGTFHGLAHRLLRTHY 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            +AN+   F I D +   +LI    K  L S+ LD  +
Sbjct: 103 KDANLPQTFQIIDSDDQLRLI----KRILKSLHLDEKQ 136


>gi|296532805|ref|ZP_06895482.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC
           49957]
 gi|296266866|gb|EFH12814.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC
           49957]
          Length = 745

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 39/142 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT +L  R   +L+   A P+ +L +T T  AA EM  RV  I+    H ++
Sbjct: 38  VLAGAGTGKTRVLTTRFAHILMTRRAFPNQVLAVTFTNKAAREMRERVSAIL---GHPAE 94

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                              GL + T HA C  ++++      +T
Sbjct: 95  -----------------------------------GLWLGTFHALCARMLRRHAELVGLT 119

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
           S+F+I D +   +L+++  +++
Sbjct: 120 SNFSILDTDDQMRLLKQVMEAS 141


>gi|320353670|ref|YP_004195009.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
 gi|320122172|gb|ADW17718.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
          Length = 731

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 30/50 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT  LV R+  L+     P ++L LT T+ AA EM HR  E+
Sbjct: 42 VIAGAGSGKTRTLVYRMAYLIEQGVEPESILLLTFTRRAAQEMLHRAGEL 91


>gi|113868708|ref|YP_727197.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113527484|emb|CAJ93829.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16]
          Length = 782

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          DL++   +EQL A + P   A + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3  DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTN 62

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  ++
Sbjct: 63 KAAKEMQTRLSSML 76


>gi|325972063|ref|YP_004248254.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324027301|gb|ADY14060.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 1104

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 27/129 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT +L  R LRL+L   A    +L LT T+ AA EM  R+        HL  
Sbjct: 31  VSAGAGSGKTTVLSYRFLRLVLEGKAQVGEILTLTFTRKAAREMQERIHR------HL-- 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            +      +I G+    S+ S                 + T+ +FC  I++   +   I 
Sbjct: 83  -LCCKNDERIVGQLATFSEAS-----------------ISTLDSFCSQIVRSDSIRYGIA 124

Query: 155 SHFAIADEE 163
             F I DE+
Sbjct: 125 QDFVIDDEQ 133


>gi|114322010|ref|YP_743693.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii
          MLHE-1]
 gi|114228404|gb|ABI58203.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii
          MLHE-1]
          Length = 725

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R   L+ +  A P  ++ +T T  AAAEM HR+ E++
Sbjct: 31 VLAGAGSGKTRVLTRRAAWLVRVEGASPFGIMAVTFTNKAAAEMRHRIGELL 82


>gi|146300673|ref|YP_001195264.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
 gi|146155091|gb|ABQ05945.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
          Length = 778

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          ID +++ + + +L  D      + A AGSGKT +L  R+  L+        +L LT T  
Sbjct: 5  IDQLNEAQRQPVLKKDG--PMIIIAGAGSGKTRVLTIRIAYLMAQGVDAFNILSLTFTNK 62

Query: 74 AAAEMSHRVLEIITA 88
          AA EM HR+ +I+ A
Sbjct: 63 AAREMKHRIADIVGA 77


>gi|261367235|ref|ZP_05980118.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum
           variabile DSM 15176]
 gi|282570836|gb|EFB76371.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum
           variabile DSM 15176]
          Length = 1160

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 25/142 (17%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89
           S  VSA AGSGKT +LV+RV+ ++    HP    +LL +T T AAAA++   +       
Sbjct: 23  SLLVSAAAGSGKTRVLVERVVGMITDPQHPVEADSLLIMTFTNAAAAKLRADIA------ 76

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           + L+DE+           + +  ++   R  L+    + G     T+ AFC   +QQ   
Sbjct: 77  TRLADEV-----------RAHPGNVRLRRQQLLLQRASIG-----TVDAFCLHFVQQHFA 120

Query: 150 EANITSHFAIADEEQSKKLIEE 171
             ++   F  A+E    ++ +E
Sbjct: 121 ALDVPPDFETAEEADLARIEQE 142


>gi|325269864|ref|ZP_08136474.1| helicase [Prevotella multiformis DSM 16608]
 gi|324987837|gb|EGC19810.1| helicase [Prevotella multiformis DSM 16608]
          Length = 1099

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSD- 94
           A+AGSGKT  L    + L++ N      +L +T T  A  EM  R+L  +   +H LSD 
Sbjct: 10  ASAGSGKTFTLASEYIALVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHGLSDS 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           +    ++ K  G  P  +    A   L  +       +VQTI AF +++++    E N+T
Sbjct: 70  QAYFDQVVKKTGF-PETTIREHAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLAHELNLT 128

Query: 155 SHFAI 159
           ++  I
Sbjct: 129 ANLRI 133


>gi|317495222|ref|ZP_07953592.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424]
 gi|316914644|gb|EFV36120.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424]
          Length = 728

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
          ++L+      QL A   T+ A  V A AGSGKT +L  R+  L+   N   S +L +T T
Sbjct: 1  MELVQNMNENQLKAILKTQGAVMVIAGAGSGKTRVLTNRIAYLIAEKNVLESNILAITFT 60

Query: 72 KAAAAEMSHRVLEIITAWS 90
            AA EM  R+  ++   S
Sbjct: 61 NKAAKEMKERIYSLVGETS 79


>gi|228996423|ref|ZP_04156064.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock3-17]
 gi|228763306|gb|EEM12212.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock3-17]
          Length = 687

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ + N HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLINVKNVHPRNILLLTFTQKAAEEIRSRV 115


>gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552915|gb|EGD22598.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
          Length = 824

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 40/141 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL      P  +L +T T  AAAEM  RV +++        
Sbjct: 51  IVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAQLV-------- 102

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                      G + N                    + V T H+ C  I++ Q  L   +
Sbjct: 103 -----------GPRANS-------------------MWVSTFHSSCVRILRAQAGLLHGL 132

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
            S+F+I D + S++L+    K
Sbjct: 133 NSNFSIYDADDSRRLLTMISK 153


>gi|293189192|ref|ZP_06607916.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309]
 gi|292821864|gb|EFF80799.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309]
          Length = 1142

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 30/159 (18%)

Query: 14  IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTH 70
           +D       EQ+ +   P R   V A AGSGKT  +  RVL LL    +  PS++L LT 
Sbjct: 12  VDATKTPTPEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLSPSSILGLTF 71

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+ AA E+  R+ E I         +LS E+ +++ +                + E P  
Sbjct: 72  TRKAAGELGERLRERI--------RLLSREMPQLRER----------------LDEDPVS 107

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           L   T ++F E I+ +  +   I   F++  E  +  L+
Sbjct: 108 L---TYNSFAERIVSEHGMRIGIDPDFSMLSEAGALDLM 143


>gi|226323304|ref|ZP_03798822.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758]
 gi|225208494|gb|EEG90848.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758]
          Length = 347

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 39/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV +I+   S      
Sbjct: 26  AGAGSGKTRVLTHRIAWLIDQIGVNPWNILAITFTNKAAGEMRERVDQIVGFGSE----- 80

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                             + V T H+ C  I++++       ++
Sbjct: 81  ---------------------------------SIWVSTFHSMCVRILRRYIDRLGYDTN 107

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D +  K LI++  K
Sbjct: 108 FTIYDADDQKTLIKDVCK 125


>gi|327399219|ref|YP_004340088.1| UvrD/REP helicase [Hippea maritima DSM 10411]
 gi|327181848|gb|AEA34029.1| UvrD/REP helicase [Hippea maritima DSM 10411]
          Length = 667

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD-- 94
           A AGSGKT  L  ++  +L    A P  +L LT T  AA EM  R+ ++I   S  SD  
Sbjct: 30  AGAGSGKTKTLTHKIAFILNEGLAKPYQILALTFTNKAAGEMKERIGKLI--GSQASDMW 87

Query: 95  ----EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAI 143
                 ++ +I + +G +P   D     +L+  IL+      K  T  AFC +I
Sbjct: 88  IGTFHSIALKILRKEGFRPTIYDSKDQENLIKEILKKLNIDSKKYTPRAFCSSI 141


>gi|320546489|ref|ZP_08040804.1| exonuclease RexA [Streptococcus equinus ATCC 9812]
 gi|320448874|gb|EFW89602.1| exonuclease RexA [Streptococcus equinus ATCC 9812]
          Length = 1208

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 28/156 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R++  +L       L   T T  AA E+  R              
Sbjct: 45  VSASAGSGKTFVMVERIIDKILRGVTVDQLFISTFTVKAAGELKER-------------- 90

Query: 96  ILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLK---VQTIHAFCEAIMQQFPLEA 151
            L  +I+K+ Q  K N +       LL        GL+   + T+ AF + ++ Q+    
Sbjct: 91  -LEKKISKVLQVTKDNDTKTYLNEQLL--------GLQTADIGTMDAFTQKLVNQYGYTL 141

Query: 152 NITSHFAIADEEQSKKLIE-EAKKSTLASIMLDNNE 186
            I+  F I  ++  + L++ E      +  ML  N+
Sbjct: 142 GISPTFRIMTDKSEQDLVKNEVFADLFSDYMLGENQ 177


>gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
 gi|226243538|dbj|BAH53886.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
          Length = 827

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%)

Query: 18  SQTKSEQLLA--SDPTRSAWVSAN--------AGSGKTHILVQRVLRLLLANA-HPSTLL 66
           ++T S+ LL   + P R A V A         AGSGKT +L +R+  LL      P  +L
Sbjct: 23  ARTGSDALLQGLNPPQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQIL 82

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AAAEM  RV  ++                   G + N                
Sbjct: 83  AITFTNKAAAEMRERVAHLV-------------------GPRANS--------------- 108

Query: 127 TPGGLKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKK 174
               + V T H+ C  I++ Q  L   + S+F+I D + S++L+    K
Sbjct: 109 ----MWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLLTMISK 153


>gi|94499918|ref|ZP_01306454.1| DNA helicase II [Oceanobacter sp. RED65]
 gi|94428119|gb|EAT13093.1| DNA helicase II [Oceanobacter sp. RED65]
          Length = 736

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 41/161 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +E +D ++  + E +  + P     V A AGSGKT +LV R+  L+ + +  PS+++ +T
Sbjct: 7   TELLDGLNPPQREAV--ASPLNHQLVLAGAGSGKTRVLVHRIAWLMQIEHISPSSIMAVT 64

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV                 E+T I                      +P 
Sbjct: 65  FTNKAAKEMRSRV----------------EELTGI----------------------SPK 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            L + T H+    +++    +AN++ +F + D +   +LI+
Sbjct: 87  HLWIGTFHSLAHRLLRTHWKQANLSENFQVMDSDDQLRLIK 127


>gi|330446369|ref|ZP_08310021.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490560|dbj|GAA04518.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 693

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT +LV R   L+ +  A P  +L L   + AA EMS R+ E ++    ++ 
Sbjct: 214 VLAGAGTGKTSVLVARAGYLIASQQAVPEDILMLAFGRKAAEEMSERMREKVSDRVKVAT 273

Query: 95  --EILSAEITKIQGKKPN 110
              + S  IT+++G+KPN
Sbjct: 274 FHSLGSQIITEVEGEKPN 291


>gi|220918612|ref|YP_002493916.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956466|gb|ACL66850.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  RV  LL+    P  +L +T T  AA EM  RV
Sbjct: 24 VLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTNKAAGEMRERV 70


>gi|302325472|gb|ADL24673.1| UvrD/REP helicase domain protein/acyltransferase domain protein
          [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 744

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L +R+   +++   P  +L LT T  AAAEM  RV ++
Sbjct: 30 ILAGAGSGKTSVLTKRIQYRIMSGVEPEKILALTFTAKAAAEMRERVQKL 79


>gi|209973035|ref|YP_002300482.1| putative UvrD-type helicase [Bacillus phage SPO1]
          Length = 703

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           ++A AGSGKT +L  R+  +L        +LC T+TK A  EM+ R+ ++I++
Sbjct: 49  INAVAGSGKTRVLTSRIAYMLSTGIKARHILCTTYTKKATQEMTERLSKLISS 101


>gi|197123847|ref|YP_002135798.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196173696|gb|ACG74669.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  RV  LL+    P  +L +T T  AA EM  RV
Sbjct: 24 VLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTNKAAGEMRERV 70


>gi|110835551|ref|YP_694410.1| DNA helicase II [Alcanivorax borkumensis SK2]
 gi|110648662|emb|CAL18138.1| DNA helicase II [Alcanivorax borkumensis SK2]
          Length = 720

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 45/215 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTK 72
           ID ++  + + + A D  +   V A AGSGKT +LV R+  ++    A P  +L +T T 
Sbjct: 8   IDGLNPAQRDAVAADD--QHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ +++                          DMS              G+ 
Sbjct: 66  KAAAEMRGRIEQLL--------------------------DMSAD------------GMW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H     +++    EA +   F I D +   +LI+   K     + LD      +  
Sbjct: 88  VGTFHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSK----ELGLDEQRWPARQA 143

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
              +    DE +     D   +  AL +   +F+Y
Sbjct: 144 TWFINSQKDEGLRARHMDTGGDLFALTMQKIYFAY 178


>gi|86159793|ref|YP_466578.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|85776304|gb|ABC83141.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  RV  LL+    P  +L +T T  AA EM  RV
Sbjct: 24 VLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTNKAAGEMRERV 70


>gi|254448468|ref|ZP_05061928.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium
           HTCC5015]
 gi|198261851|gb|EDY86136.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium
           HTCC5015]
          Length = 725

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 43/167 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +    P  L+ +T
Sbjct: 4   SYLLDGLNDAQREAVCA--PPANLLVLAGAGSGKTRVLVHRMAWLIEVEKVSPYGLMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP- 128
            T  AAAEM  R                                          +L  P 
Sbjct: 62  FTNKAAAEMRQRCE---------------------------------------ALLGMPT 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           GG+ V T H     +++Q   EA +   F I D +   +L++   +S
Sbjct: 83  GGMWVGTFHGISHRLLRQHWQEAGLPEGFQILDSQDQLRLVKRVVRS 129


>gi|17546954|ref|NP_520356.1| DNA helicase II protein [Ralstonia solanacearum GMI1000]
 gi|17429255|emb|CAD15942.1| probable dna helicase II protein [Ralstonia solanacearum GMI1000]
          Length = 829

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           +L++    EQ  A + P  SA + A AGSGKT +L  R+  L+  A   PS +L +T T 
Sbjct: 38  ELLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 97

Query: 73  AAAAEMSHRV 82
            AA EM+ R+
Sbjct: 98  KAAKEMTARL 107


>gi|320102499|ref|YP_004178090.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644]
 gi|319749781|gb|ADV61541.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644]
          Length = 1214

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 31/192 (16%)

Query: 36  VSANAGSGKTHILVQRVL-----RLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
           +S+ AG GKT +L +R++     RLL  + H    ++ +T T AAA E+ +R+     AW
Sbjct: 31  LSSGAGCGKTTVLSERLIAEYRERLLHTDFHDLRRVVAVTFTDAAARELLNRIRH--CAW 88

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             +               K N       +++L  +   P G    T H+FC  ++++  L
Sbjct: 89  KSVD-------------SKTNDRLACVWKNMLRGLDAAPIG----TFHSFCGRLIRRHAL 131

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLI 208
              I   F IA+E  +  L   A    L  ++ +N+++L     +I  +      +  ++
Sbjct: 132 ALGIDPAFTIANETLTPTLKSRAVVRCLRHLLTNNDDDL-----QIFAVEEGLPAVRAML 186

Query: 209 SDIISNRTALKL 220
            +I+ +R A+ L
Sbjct: 187 EEILDDRDAVDL 198


>gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311887919|emb|CBH47231.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 824

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 40/141 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL      P  +L +T T  AAAEM  RV +++        
Sbjct: 51  IVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAQLV-------- 102

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                      G + N                    + V T H+ C  I++ Q  L   +
Sbjct: 103 -----------GPRANS-------------------MWVSTFHSSCVRILRAQAGLLHGL 132

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
            S+F+I D + S++L+    K
Sbjct: 133 NSNFSIYDADDSRRLLTMISK 153


>gi|270284798|ref|ZP_06194192.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
           Nigg]
 gi|270288828|ref|ZP_06195130.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
           Weiss]
 gi|301336178|ref|ZP_07224380.1| exodeoxyribonuclease V beta chain [Chlamydia muridarum MopnTet14]
          Length = 1026

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 12/129 (9%)

Query: 30  PTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVL 83
           PT S     ++ A+AG+GKT  + Q +LR LL      T  +L +T T AA  E+  R+ 
Sbjct: 9   PTTSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQ 68

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFC 140
           E +     L  + LS   T +       S  +K + L I I   L T   + + TIH FC
Sbjct: 69  ESLKQALTLFSQALSHPETPLPPYV--SSQETKVKQLYIKIRNSLATLDEMNIFTIHGFC 126

Query: 141 EAIMQQ-FP 148
              ++Q FP
Sbjct: 127 RFTLEQHFP 135


>gi|168216776|ref|ZP_02642401.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC
          8239]
 gi|182381218|gb|EDT78697.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC
          8239]
          Length = 751

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +DL S    EQ  A+        + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1  MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAAGEMRERVKSLV 74


>gi|168205088|ref|ZP_02631093.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str.
          JGS1987]
 gi|170663345|gb|EDT16028.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str.
          JGS1987]
          Length = 751

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +DL S    EQ  A+        + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1  MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAAGEMRERVKSLV 74


>gi|146329291|ref|YP_001209094.1| DNA helicase II [Dichelobacter nodosus VCS1703A]
 gi|146232761|gb|ABQ13739.1| DNA helicase II [Dichelobacter nodosus VCS1703A]
          Length = 712

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +LVQR+  L+ +A   P  LL LT T  AA EM  R+
Sbjct: 27 VIAGAGSGKTRVLVQRMQWLMTVAGCMPYQLLALTFTNKAAQEMRQRL 74


>gi|145301020|ref|YP_001143861.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853792|gb|ABO92113.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 723

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 43/186 (23%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ +    P +++ +T T  AAAEM  RV +++ +
Sbjct: 21  PRSNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVLGS 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                    G+ + T H     +++   
Sbjct: 81  MQR--------------------------------------GMWIGTFHGIAHRLLRAHH 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
           L+A +   F I D +   +LI    +  + ++ LD      +A    +    DE +    
Sbjct: 103 LDAGLPQDFQILDSDDQYRLI----RRVIKALNLDEKHWAPRAVMSYINGKKDEGLRPGD 158

Query: 209 SDIISN 214
            D+  +
Sbjct: 159 IDLYGD 164


>gi|110596834|ref|ZP_01385124.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031]
 gi|110341521|gb|EAT59981.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031]
          Length = 740

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  L+      P+ +L LT T  AA EM HRV  ++ A S
Sbjct: 25 VLAGAGSGKTRVITYRIAYLISNEGVSPNNILALTFTNKAAGEMRHRVDTLLHAGS 80


>gi|329964807|ref|ZP_08301830.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
 gi|328524658|gb|EGF51721.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
          Length = 767

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 39/164 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           S+ I  +++ + E +L +D    + V A AGSGKT +L  ++  LL     P  +L LT 
Sbjct: 2   SDYIQELNEGQREAVLYNDG--PSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTF 59

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+   + A                           +ARHL +        
Sbjct: 60  TNKAAREMKERIARQVGA--------------------------DRARHLWMG------- 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               T H+    I+     +   TS F I D   SK L+    K
Sbjct: 87  ----TFHSMFLRILHAEAGQLGFTSQFTIYDTADSKSLLRSIIK 126


>gi|146318409|ref|YP_001198121.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 05ZYH33]
 gi|146320605|ref|YP_001200316.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 98HAH33]
 gi|253750625|ref|YP_003024062.1| exonuclease RexA [Streptococcus suis BM407]
 gi|251764567|sp|A4W0M7|ADDA_STRS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764570|sp|A4VUD2|ADDA_STRSY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|145689215|gb|ABP89721.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Streptococcus suis
           05ZYH33]
 gi|145691411|gb|ABP91916.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Streptococcus suis
           98HAH33]
 gi|251819057|emb|CAZ55679.1| exonuclease RexA [Streptococcus suis BM407]
 gi|292558201|gb|ADE31202.1| putative exonuclease RexA [Streptococcus suis GZ1]
          Length = 1227

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 33/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  VSA+AGSGKT ++VQR+L  L        L   T T  AA E+  R+         
Sbjct: 52  QNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELKERI------EKK 105

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L++ I  AE T          DM   RHL   + +      + T+ +F + ++  +    
Sbjct: 106 LNETI--AETT----------DMELRRHLSAQLADLTKA-DIGTMDSFTQKLVTTYGYSL 152

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
            I+  F I        L +E +K++L   + D      + F + LE   +     L+ + 
Sbjct: 153 GISPQFRI--------LQDETEKASLKKEVFD------QLFADYLEEDENGAFRKLVRNF 198

Query: 212 ISNR 215
             NR
Sbjct: 199 SGNR 202


>gi|224534483|ref|ZP_03675059.1| exodeoxyribonuclease V, beta subunit [Borrelia spielmanii A14S]
 gi|224514160|gb|EEF84478.1| exodeoxyribonuclease V, beta subunit [Borrelia spielmanii A14S]
          Length = 1173

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSHL- 92
          + A+AG+GKTHIL   VL L+    +  + +L LT TK A  EM  R+L+ I  A+ +L 
Sbjct: 16 IEASAGTGKTHILENLVLNLMKTKLYSINEILVLTFTKKATEEMHARILKAIENAYFNLK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|86156526|ref|YP_463311.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773037|gb|ABC79874.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 797

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 43/154 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++V R+ RL+      P  +L +T T  AA EM  R+  ++        
Sbjct: 33  VLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTNKAAGEMRERLERLLGPL----- 87

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                 AR L            VQT HAF    +++    A + 
Sbjct: 88  ----------------------ARELW-----------VQTFHAFGARFLRREAARAGLP 114

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             FAI D++   +L+    K  LA + LD  E L
Sbjct: 115 PSFAIYDDDDQLRLV----KRILAEVGLDEAEGL 144


>gi|261415103|ref|YP_003248786.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
          S85]
 gi|261371559|gb|ACX74304.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
          S85]
          Length = 744

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L +R+   +++   P  +L LT T  AAAEM  RV ++
Sbjct: 30 ILAGAGSGKTSVLTKRIQYRIMSGVEPEKILALTFTAKAAAEMRERVQKL 79


>gi|228990313|ref|ZP_04150279.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus pseudomycoides DSM
           12442]
 gi|228769389|gb|EEM17986.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus pseudomycoides DSM
           12442]
          Length = 687

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ + N HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLINVKNVHPRNILLLTFTQKAAEEIRSRV 115


>gi|182625530|ref|ZP_02953301.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str.
          JGS1721]
 gi|177909218|gb|EDT71683.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str.
          JGS1721]
          Length = 751

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +DL S    EQ  A+        + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1  MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAAGEMRERVKSLV 74


>gi|160877119|ref|YP_001556435.1| DNA-dependent helicase II [Shewanella baltica OS195]
 gi|160862641|gb|ABX51175.1| DNA helicase II [Shewanella baltica OS195]
 gi|315269321|gb|ADT96174.1| DNA helicase II [Shewanella baltica OS678]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|88856786|ref|ZP_01131440.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
 gi|88813954|gb|EAR23822.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
          Length = 1086

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
          T  +Q++   P   A V A AGSGKT  +  RV+ L+  N   P  +L LT T+ AA  +
Sbjct: 17 TAQQQVVIEAPLSPALVVAGAGSGKTDTMASRVVWLVANNFVSPDQVLGLTFTRKAAGSL 76

Query: 79 SHRVLEII 86
          S RV E I
Sbjct: 77 SKRVSERI 84


>gi|294142649|ref|YP_003558627.1| DNA helicase II [Shewanella violacea DSS12]
 gi|293329118|dbj|BAJ03849.1| DNA helicase II [Shewanella violacea DSS12]
          Length = 721

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 43/158 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  S  V A AGSGKT +L  R+  L+ +    P ++L +T T  AAAEM  RV      
Sbjct: 21  PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAEMRDRV------ 74

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                             +K + S+M              G + + T H     +++   
Sbjct: 75  ------------------EKVSGSNM--------------GRMWIGTFHGLAHRLLRTHY 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            +AN+   F I D +   +LI    K  L S+ LD  +
Sbjct: 103 KDANLPQTFQIIDSDDQLRLI----KRILKSLNLDEKQ 136


>gi|223044036|ref|ZP_03614076.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14]
 gi|222442579|gb|EEE48684.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14]
          Length = 731

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
          L+    +EQ  A   T     + A AGSGKT +L  R+  LL+  +  P  +L +T T  
Sbjct: 4  LVKNMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLVEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAKEMKERVEQLV 76


>gi|171057030|ref|YP_001789379.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
 gi|170774475|gb|ACB32614.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
          Length = 687

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++  ++ RLL A   P  +  +T T  AA EM  R   +I A
Sbjct: 25 VLAGAGSGKTRVITHKIARLLQAGLKPDQIAAITFTNKAAQEMRERARSLIGA 77


>gi|169347181|ref|ZP_02866123.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str.
          JGS1495]
 gi|169296864|gb|EDS78993.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str.
          JGS1495]
          Length = 751

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +DL S    EQ  A+        + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1  MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAAGEMRERVKSLV 74


>gi|149910376|ref|ZP_01899018.1| putative exodeoxyribonuclease V [Moritella sp. PE36]
 gi|149806524|gb|EDM66493.1| putative exodeoxyribonuclease V [Moritella sp. PE36]
          Length = 1190

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 28/153 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST--------------LLCLTHTKAAAAEMSHR 81
           + A+AG+GKT  +    LRLLL +   +               +L +T T+AA AE+  R
Sbjct: 20  IEASAGTGKTFTIASLYLRLLLGHGGDNAYNKEGQIEALNVDQILVVTFTEAATAELRDR 79

Query: 82  V------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +        I  +  +  D ++S  +T I     N+ D ++    L+          + T
Sbjct: 80  IRARIHQARIAFSIGNSDDPVISLLLTDI-----NELDYARCAKSLLAAERQMDEAAIYT 134

Query: 136 IHAFCEAIMQQFPLEAN--ITSHFAIADEEQSK 166
           IH FC+ +++Q   E+     S F I DE Q K
Sbjct: 135 IHGFCQRMLKQNAFESGALFESEF-ITDESQLK 166


>gi|126696548|ref|YP_001091434.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9301]
 gi|126543591|gb|ABO17833.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9301]
          Length = 1208

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L     +  L  
Sbjct: 15  VEASAGTGKSFTLAHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKIL---LRFHTLKV 71

Query: 95  EILSAEITKIQGKKP----NKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQ 146
            + S    KI         N  D  +++  +I+     +     LKV T HAFC  I+ +
Sbjct: 72  YLQSHNEVKIDNTLKDWYLNFKDKDESKENIISEIDNFINQFYKLKVITFHAFCNDIIDE 131

Query: 147 FPLEANIT 154
           + +E  +T
Sbjct: 132 YSIEIGVT 139


>gi|319427815|gb|ADV55889.1| DNA helicase II [Shewanella putrefaciens 200]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|110803328|ref|YP_699522.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101]
 gi|110683829|gb|ABG87199.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101]
          Length = 751

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +DL S    EQ  A+        + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1  MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAAGEMRERVKSLV 74


>gi|90407425|ref|ZP_01215609.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3]
 gi|90311456|gb|EAS39557.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3]
          Length = 1196

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 38/159 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA----NAHPSTL-----LCLTHTKAAAAEMSHRVLEII 86
           + A+AG+GKT+ +    +RLLL     N+H + L     L +T T+AA AE+  R+    
Sbjct: 23  IEASAGTGKTYTIASLFIRLLLGHGDENSHQTPLSVDKILVVTFTEAATAELRSRI---- 78

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-------------V 133
                  D I+S  +  + GK  +       + LL + LE    ++             V
Sbjct: 79  ------RDRIISVRLDFMLGKSADPF----VQALLDSSLEIDADIRLLRFAELQMDEAAV 128

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            TIH FC+ ++ Q   E+   S F     E    LIE+A
Sbjct: 129 YTIHGFCQRMLMQNAFESG--SLFEQKLLEDDSLLIEQA 165


>gi|304410803|ref|ZP_07392420.1| DNA helicase II [Shewanella baltica OS183]
 gi|307305026|ref|ZP_07584776.1| DNA helicase II [Shewanella baltica BA175]
 gi|304350700|gb|EFM15101.1| DNA helicase II [Shewanella baltica OS183]
 gi|306912428|gb|EFN42852.1| DNA helicase II [Shewanella baltica BA175]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|253751554|ref|YP_003024695.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
           SC84]
 gi|253753455|ref|YP_003026596.1| ATP-dependent exonuclease subunit A [Streptococcus suis P1/7]
 gi|251815843|emb|CAZ51451.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
           SC84]
 gi|251819701|emb|CAR45515.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
           P1/7]
 gi|319757986|gb|ADV69928.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
           JS14]
          Length = 1216

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 33/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  VSA+AGSGKT ++VQR+L  L        L   T T  AA E+  R+         
Sbjct: 41  QNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELKERI------EKK 94

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L++ I  AE T          DM   RHL   + +      + T+ +F + ++  +    
Sbjct: 95  LNETI--AETT----------DMELRRHLSAQLADLTKA-DIGTMDSFTQKLVTTYGYSL 141

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
            I+  F I        L +E +K++L   + D      + F + LE   +     L+ + 
Sbjct: 142 GISPQFRI--------LQDETEKASLKKEVFD------QLFADYLEEDENGAFRKLVRNF 187

Query: 212 ISNR 215
             NR
Sbjct: 188 SGNR 191


>gi|168213169|ref|ZP_02638794.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str.
          F4969]
 gi|170715249|gb|EDT27431.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str.
          F4969]
          Length = 751

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +DL S    EQ  A+        + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1  MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAAGEMRERVKSLV 74


>gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
 gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
          Length = 862

 Score = 44.3 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 40/184 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
           + +Q +  +  ++  + A+AG+GKT+ L  RV  L+  + A    +LC+T T  AA EM 
Sbjct: 5   REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGDYAKAENILCMTFTNKAANEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  ++ +                    P K+                  ++V T H+F
Sbjct: 65  GRIQSLVGS--------------------PAKA------------------VEVSTFHSF 86

Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  I+QQ       + +   I DEE  K+L E  +   L  +   N   + K +  +   
Sbjct: 87  CFFILQQEGKRNETLYTDVTIFDEEDCKELFEPYRPGKLREMSFANVIAMVKEYRSLYGF 146

Query: 199 SNDE 202
            +D+
Sbjct: 147 YSDD 150


>gi|255283739|ref|ZP_05348294.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
 gi|255265804|gb|EET59009.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
          Length = 594

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 42/172 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
           T D +++ + E +L ++      + A AGSGKT +L  RV  L+      P  +L +T T
Sbjct: 3   TYDNLNEMQREAVLHTEG--PLLILAGAGSGKTRVLTHRVAYLIEEKGVKPWNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV           D +   E                            G +
Sbjct: 61  NKAAGEMRERV-----------DNLAGPE---------------------------AGSV 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIML 182
            V T H+ C  I+++F       ++F I D +  K L+++  KK  + + ML
Sbjct: 83  WVSTFHSLCVRILRRFIDRLGYENNFTIYDTDDQKSLMKDICKKLNIDTKML 134


>gi|56461651|ref|YP_156932.1| DNA-dependent helicase II [Idiomarina loihiensis L2TR]
 gi|56180661|gb|AAV83383.1| Superfamily I DNA helicase, UvrD [Idiomarina loihiensis L2TR]
          Length = 723

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 43/150 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+    + P ++L +T T  AAAEM  RV +++        
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLIQERQYSPFSILAVTFTNKAAAEMRGRVEQLVG------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S  R           G+ + T H     +++   ++  + 
Sbjct: 80  --------------------SSVR-----------GMWIGTFHGLAHRLLRAHYMDVGLP 108

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
            +F I D +  ++LI    K  + S+ LD+
Sbjct: 109 QNFQIIDSDDQQRLI----KRLIKSLNLDD 134


>gi|18311242|ref|NP_563176.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens str. 13]
 gi|18145925|dbj|BAB81966.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
          Length = 751

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +DL S    EQ  A+        + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1  MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAAGEMRERVKSLV 74


>gi|120597399|ref|YP_961973.1| DNA-dependent helicase II [Shewanella sp. W3-18-1]
 gi|146294460|ref|YP_001184884.1| DNA-dependent helicase II [Shewanella putrefaciens CN-32]
 gi|120557492|gb|ABM23419.1| ATP-dependent DNA helicase UvrD [Shewanella sp. W3-18-1]
 gi|145566150|gb|ABP77085.1| ATP-dependent DNA helicase UvrD [Shewanella putrefaciens CN-32]
          Length = 722

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|291523576|emb|CBK81869.1| Superfamily I DNA and RNA helicases [Coprococcus catus GD/7]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A  GSGKT ++  RV  L+  A  HP+ +L +T TKAAA EM  R + ++  
Sbjct: 20 VLAGPGSGKTMVITHRVKWLIEHAGVHPAGILVVTFTKAAADEMRQRFVSLMDG 73


>gi|290242989|ref|YP_003494659.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945494|gb|ADC73192.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 704

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A + A AG+GKT  L +R  R+L +  HP  LL LT ++ AA EM  R+
Sbjct: 21 ALILAGAGAGKTATLTERTARMLESGHHPENLLMLTFSRKAAREMYARL 69


>gi|209972997|ref|YP_002300444.1| gp34.33 [Bacillus phage SPO1]
 gi|209871317|gb|ACI91073.1| gp34.33 [Bacillus phage SPO1]
          Length = 978

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           ++A AGSGKT +L  R+  +L        +LC T+TK A  EM+ R+ ++I++
Sbjct: 49  INAVAGSGKTRVLTSRIAYMLSTGIKARHILCTTYTKKATQEMTERLSKLISS 101


>gi|110800092|ref|YP_696932.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC
          13124]
 gi|110674739|gb|ABG83726.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC
          13124]
          Length = 751

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +DL S    EQ  A+        + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1  MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAAGEMRERVKSLV 74


>gi|302335487|ref|YP_003800694.1| UvrD/REP helicase [Olsenella uli DSM 7084]
 gi|301319327|gb|ADK67814.1| UvrD/REP helicase [Olsenella uli DSM 7084]
          Length = 1176

 Score = 44.3 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 40/171 (23%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS---------TLLCLTHTKAAAAEMSHRV 82
           R  +V+A AGSGK+  L +RV   L   +             +L +T T+AAA E+  ++
Sbjct: 18  RPLFVAAGAGSGKSSTLAERVAWALTPGSGAKGTAFLESLDQVLVITFTRAAAEEIKEKI 77

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
              +     L+D+ L+ +   I                              TIHA C  
Sbjct: 78  RARLRE-GGLADQALAVDSAWIS-----------------------------TIHAMCSR 107

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN-EELKKAF 192
           I+++   +  I   F +  E+  K+++EEA    L  +  D     L +AF
Sbjct: 108 ILRRHAFDLGIDLGFEVLSEKDGKRMVEEAVDEVLRDVRYDEGYASLLRAF 158


>gi|300173052|ref|YP_003772218.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811]
 gi|299887431|emb|CBL91399.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811]
          Length = 1242

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V+A+AGSGKT +L++R+++ +L+       L +T T AAA EM  R+
Sbjct: 22 VAASAGSGKTTVLIERLIQKILSGTSVENFLIVTFTNAAAKEMRERL 68


>gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 864

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 38/143 (26%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           S  V+A  G+GKT ++  R    ++    P+ +LCLT T  AA EM  R+          
Sbjct: 30  SLLVTAPVGTGKTSVISLRAANAIVNGFDPNKILCLTFTNRAAREMKERI---------- 79

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                      IQ   P   + +                 ++T HA C  I++       
Sbjct: 80  -----------IQDLGPRAQNTT-----------------IKTFHALCAEIIRIESDILG 111

Query: 153 ITSHFAIADEEQSKKLIEEAKKS 175
           I + F I DEE +K ++ +  K+
Sbjct: 112 IPADFNIFDEEDAKTILNDVIKT 134


>gi|262276563|ref|ZP_06054372.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886]
 gi|262220371|gb|EEY71687.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886]
          Length = 1187

 Score = 44.3 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 26/145 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-----AHPSTL-----LCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +     AHP  L     L +T T+AA  E+  R+   
Sbjct: 19  IEASAGTGKTFTIAGLYLRLLLGHGNKDTAHPRPLSVDKILVVTFTEAATQELRDRIRSR 78

Query: 86  I----TAWS--HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           I     A+S  H  D ++   +  I       +D  +A  LL+          + TIH F
Sbjct: 79  IHDARLAFSRGHSDDPVIKPLLDDI-------ADHVQAERLLLQAERQMDEAAIYTIHGF 131

Query: 140 CEAIMQQFPLEAN--ITSHFAIADE 162
           C+ ++ Q   E+    T+ F I DE
Sbjct: 132 CQRMLTQNAFESGSLFTNEF-ITDE 155


>gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 896

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++   S
Sbjct: 27 VLASPGCGKTHILAERIRYAREKGVRYEDMLCLTFTNRAAREMTNRIQKVVGGDS 81


>gi|227498096|ref|ZP_03928269.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226832489|gb|EEH64872.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 972

 Score = 44.3 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 43/137 (31%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL    A P  +L +T T  AAAEM  RV  ++        
Sbjct: 153 IIAGAGSGKTRVLTHRIAYLLATGRARPGEILAITFTNKAAAEMRERVAGLV-------- 204

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEAN 152
                                            P G +  V T H+ C  I+++    A 
Sbjct: 205 --------------------------------GPAGERMWVSTFHSACVRILRREHEAAG 232

Query: 153 ITSHFAIADEEQSKKLI 169
           + S F+I D   S++LI
Sbjct: 233 LRSTFSIYDSADSQRLI 249


>gi|209695575|ref|YP_002263504.1| DNA helicase IV [Aliivibrio salmonicida LFI1238]
 gi|208009527|emb|CAQ79819.1| helicase IV [Aliivibrio salmonicida LFI1238]
          Length = 687

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           SF    E+  L    +S  LL  D T    V A AGSGKT +LV RV  L+ +  A P  
Sbjct: 187 SFFSECESQPLNESQQSALLLNEDHTL---VLAGAGSGKTSVLVARVNYLIKSQVAQPEE 243

Query: 65  LLCLTHTKAAAAEMSHRVLE 84
           +L L   + AA EMS R++E
Sbjct: 244 ILLLAFGRQAAQEMSARIIE 263


>gi|220917224|ref|YP_002492528.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955078|gb|ACL65462.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 726

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 28/50 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT  L  RV RL+     P  +L LT T  AA EM  RV E+
Sbjct: 40 VIAGAGSGKTRTLTWRVARLVADGVAPEGILLLTFTNKAAREMLRRVEEV 89


>gi|126172693|ref|YP_001048842.1| DNA-dependent helicase II [Shewanella baltica OS155]
 gi|217974967|ref|YP_002359718.1| DNA-dependent helicase II [Shewanella baltica OS223]
 gi|125995898|gb|ABN59973.1| ATP-dependent DNA helicase UvrD [Shewanella baltica OS155]
 gi|217500102|gb|ACK48295.1| DNA helicase II [Shewanella baltica OS223]
          Length = 722

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|225027668|ref|ZP_03716860.1| hypothetical protein EUBHAL_01927 [Eubacterium hallii DSM 3353]
 gi|224954982|gb|EEG36191.1| hypothetical protein EUBHAL_01927 [Eubacterium hallii DSM 3353]
          Length = 667

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVL 83
          V A  GSGKT ++  RV + L+ NA  HPS +L +T T+AAA EM  R  
Sbjct: 22 VLAGPGSGKTLVITYRV-KWLIENAGVHPSNILVITFTRAAAEEMRKRFF 70


>gi|125718261|ref|YP_001035394.1| exonuclease RexA, putative [Streptococcus sanguinis SK36]
 gi|251764569|sp|A3CNT9|ADDA_STRSV RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
          Full=ATP-dependent helicase/nuclease AddA
 gi|125498178|gb|ABN44844.1| Exonuclease RexA, putative [Streptococcus sanguinis SK36]
          Length = 1224

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          R+  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R+
Sbjct: 41 RNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL 91


>gi|58698437|ref|ZP_00373347.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535060|gb|EAL59149.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 893

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 106 GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161
           G + NK  +++AR L   +     GL +QTIHAFC  ++  FP+EA I  +  +++
Sbjct: 23  GSRKNKDYLTRARRLFSELENL--GLTIQTIHAFCYKLISSFPIEAGIAPNCTLSE 76


>gi|288800136|ref|ZP_06405595.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333384|gb|EFC71863.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 1076

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    ++LL+ +      +L +T T  A  EM  R+L  +   S  L D 
Sbjct: 10  ASAGSGKTFTLTIEYIKLLIKDPLSYKQILAVTFTNKATEEMKMRILSQLYGLSRLLPDS 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               EI K   +   +    ++   L  ++      ++QTI  F + ++     E ++T+
Sbjct: 70  NAYLEIIKKDTELSEEQIRQRSSLALGYLIHNYSYFQIQTIDTFFQGVLNNLARELDLTA 129

Query: 156 HFAIA-DEEQSK-----KLIEE--AKKSTLASI--MLDNNEELKKAFYEILEI 198
              +  ++EQ K     +LIEE   K   L  +  +L+ N+E  KA+  I E+
Sbjct: 130 KLRVTLNDEQLKERAVDRLIEELDPKNKVLKWVLDLLEENQEENKAWNVISEL 182


>gi|256544405|ref|ZP_05471780.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
 gi|256399937|gb|EEU13539.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
          Length = 862

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81
          ++L+  D    A V A  G+GKT  +VQ+++ L+  +   P+ +L  T TK AA E+  R
Sbjct: 6  QKLIVEDAKYPAAVLAGPGTGKTFTIVQKIISLIKNDGISPNKILVTTFTKKAANELIER 65

Query: 82 V 82
          V
Sbjct: 66 V 66


>gi|220915236|ref|YP_002490540.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953090|gb|ACL63474.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 797

 Score = 44.3 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 43/154 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++V R+ RL+      P  +L +T T  AA EM  R+  ++        
Sbjct: 33  VLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTNKAAGEMRERLERLLGPL----- 87

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                 AR L            VQT HAF    +++    A ++
Sbjct: 88  ----------------------ARELW-----------VQTFHAFGARFLRREAARAGLS 114

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             FAI D++   +L+    K  L+ + LD  E L
Sbjct: 115 PSFAIYDDDDQLRLV----KGLLSELGLDEGEGL 144


>gi|197120525|ref|YP_002132476.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196170374|gb|ACG71347.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 797

 Score = 44.3 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 43/154 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++V R+ RL+      P  +L +T T  AA EM  R+  ++        
Sbjct: 33  VLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTNKAAGEMRERLERLLGPL----- 87

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                 AR L            VQT HAF    +++    A ++
Sbjct: 88  ----------------------ARELW-----------VQTFHAFGARFLRREAARAGLS 114

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             FAI D++   +L+    K  L+ + LD  E L
Sbjct: 115 PSFAIYDDDDQLRLV----KGLLSELGLDEGEGL 144


>gi|257075414|ref|ZP_05569775.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1]
          Length = 889

 Score = 44.3 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          +R   + A AG+GKT +L +R++ LLL  +A P +++  T T  AA EM +RVL+ I
Sbjct: 23 SRYIKILAGAGAGKTEVLTRRIVNLLLNTDAPPESIVAFTFTDKAAKEMKNRVLKRI 79


>gi|153002398|ref|YP_001368079.1| DNA-dependent helicase II [Shewanella baltica OS185]
 gi|151367016|gb|ABS10016.1| DNA helicase II [Shewanella baltica OS185]
          Length = 722

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|89092193|ref|ZP_01165147.1| DNA helicase II [Oceanospirillum sp. MED92]
 gi|89083281|gb|EAR62499.1| DNA helicase II [Oceanospirillum sp. MED92]
          Length = 737

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 39/146 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P ++  V A AGSGKT +LV R+  L+      P +++ +T T  AA EM  R+ E++  
Sbjct: 21  PVKNLLVLAGAGSGKTRVLVHRIAWLIQTEGISPYSIMAVTFTNKAAKEMRGRIEELLGL 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                  P G+ V T H     +++   
Sbjct: 81  --------------------------------------NPQGMWVGTFHGLAHRLLRAHW 102

Query: 149 LEANITSHFAIADEEQSKKLIEEAKK 174
            +A +  +F I D +   +LI+   K
Sbjct: 103 QDAGLPENFQIMDSDDQLRLIKRLAK 128


>gi|114049045|ref|YP_739595.1| DNA-dependent helicase II [Shewanella sp. MR-7]
 gi|113890487|gb|ABI44538.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-7]
          Length = 722

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|168211266|ref|ZP_02636891.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str.
          ATCC 3626]
 gi|170710740|gb|EDT22922.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str.
          ATCC 3626]
          Length = 751

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +DL S    EQ  A+        + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1  MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAAGEMRERVKSLV 74


>gi|86158232|ref|YP_465017.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774743|gb|ABC81580.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 725

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 28/50 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT  L  RV RL+     P  +L LT T  AA EM  RV E+
Sbjct: 40 VIAGAGSGKTRTLTWRVARLVADGVAPEGILLLTFTNKAAREMLRRVEEV 89


>gi|113968817|ref|YP_732610.1| DNA-dependent helicase II [Shewanella sp. MR-4]
 gi|113883501|gb|ABI37553.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-4]
          Length = 722

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|117918924|ref|YP_868116.1| DNA-dependent helicase II [Shewanella sp. ANA-3]
 gi|117611256|gb|ABK46710.1| ATP-dependent DNA helicase UvrD [Shewanella sp. ANA-3]
          Length = 722

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|260904113|ref|ZP_05912435.1| UvrD/REP helicase [Brevibacterium linens BL2]
          Length = 1061

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRV 82
          ++ +DP +S  V+A AGSGKT ++ QRV+  L+AN    P  +L LT T+ A  E+  R+
Sbjct: 29 IIEADPQQSMKVTAGAGSGKTTVISQRVI-WLVANGFVDPEEILGLTFTRKAVGELGGRI 87

Query: 83 LEIITAWSH 91
            ++    H
Sbjct: 88 RVLLARLRH 96


>gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
 gi|41816608|gb|AAS11394.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
          Length = 662

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 38/137 (27%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT ++  R+  +L      S +L LT T  AA EM+ RV E+            
Sbjct: 27  AGAGSGKTRVITFRIAHMLDKGIPQSQILALTFTNKAAKEMADRVKELT----------- 75

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                   GKK                      L V T HAF   +++    +    S+F
Sbjct: 76  --------GKKLQN-------------------LTVSTFHAFGVKVLRSHIDKIGWRSNF 108

Query: 158 AIADEEQSKKLIEEAKK 174
           +I DE    +LI+E  +
Sbjct: 109 SIYDETDRNQLIKECGR 125


>gi|116490406|ref|YP_809950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni
          PSU-1]
 gi|122277405|sp|Q04GY7|ADDA_OENOB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
          Full=ATP-dependent helicase/nuclease AddA
 gi|116091131|gb|ABJ56285.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni
          PSU-1]
          Length = 1186

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
          ++A  P  +  V+A+AGSGKT +L++ V + LL+       L  T T AAA EM +R+ +
Sbjct: 10 VIAHIPDHNLLVAASAGSGKTTVLIEHVYQQLLSGKSIDRFLISTFTDAAALEMKNRLEK 69

Query: 85 IITA 88
           I A
Sbjct: 70 RIRA 73


>gi|291458763|ref|ZP_06598153.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078
          str. F0262]
 gi|291418680|gb|EFE92399.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078
          str. F0262]
          Length = 1234

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76
          T+ ++ + S    +  V+A AGSGKT +LV+ V+ LL     P   S LL +T T++AAA
Sbjct: 6  TEEQERVISHRGGNLLVAAAAGSGKTAVLVEHVISLLTEREDPTSLSELLIMTFTESAAA 65

Query: 77 EMSHRV 82
          EM  R+
Sbjct: 66 EMKERI 71


>gi|291615299|ref|YP_003525456.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
 gi|291585411|gb|ADE13069.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
          Length = 722

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 40/148 (27%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+S    EQ  A + P RSA + A AGSGKT +L  R+  L+      P  +L +T T  
Sbjct: 5   LLSGLNPEQRAAVELPARSALILAGAGSGKTRVLTTRIAWLISTGQVSPHGILAVTFTNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM                      +T++    P  +                 G+ +
Sbjct: 65  AAKEM----------------------VTRLSAMLPINTR----------------GMWI 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIAD 161
            T H  C  +++    EAN+   F I D
Sbjct: 87  GTFHGLCNRMLRAHHREANLPQTFQILD 114


>gi|124010006|ref|ZP_01694669.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
 gi|123983964|gb|EAY24352.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
          Length = 743

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 28 SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
          +DP R A         + A AGSGKT +L  R+  L+        +L LT T  AA EM 
Sbjct: 9  NDPQREAVLHKDGPIMIIAGAGSGKTRVLTNRIAHLIGTGVPAYNILALTFTNKAAGEMR 68

Query: 80 HRVLEII 86
           R+ +II
Sbjct: 69 LRIEKII 75


>gi|24372062|ref|NP_716104.1| DNA-dependent helicase II [Shewanella oneidensis MR-1]
 gi|24345940|gb|AAN53549.1|AE015495_3 DNA helicase II [Shewanella oneidensis MR-1]
          Length = 722

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|332035180|gb|EGI71690.1| exodeoxyribonuclease V beta chain [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 1192

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHPST--LLCLTHTKAAAAEMSHRVL-EI 85
           + A+AG+GKT+ +    LR LL        N   S   +L +T T AA  E+  RV   I
Sbjct: 17  IEASAGTGKTYTITGLYLRYLLGMQIEGELNTPLSVEQILVVTFTDAATQEIKDRVRSRI 76

Query: 86  ITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           I A   L     +DE++   I KI        D  +A  LL    ++     + TIH FC
Sbjct: 77  IAARDALLGQDPNDELIEGVIAKI-------DDKHRAFDLLDAAAKSMDEAAIFTIHGFC 129

Query: 141 EAIMQQFPLEANI 153
           + +++Q   E+ +
Sbjct: 130 QRMLKQHAFESGV 142


>gi|303233965|ref|ZP_07320614.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
 gi|302494890|gb|EFL54647.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
          Length = 967

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 44/209 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I  +++++L  S   ++  V+A AG+GKT ++ +R   +        +++C+T T  AA
Sbjct: 1   MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+++ +     + D                                    + V T
Sbjct: 61  DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC+ I+       +I   F I +++Q+ KL+ E     +   +L+N  +  K     
Sbjct: 85  ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNE-----IFDKILENRIDFIKKLGRK 139

Query: 196 LEISNDEDIETL---ISDIISNRTALKLI 221
           L+IS  + ++ +    + + +N    KLI
Sbjct: 140 LDISYSDTLKIIRDSFNKLRTNNIDFKLI 168


>gi|297569240|ref|YP_003690584.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925155|gb|ADH85965.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2]
          Length = 760

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 41/150 (27%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           S P     V A AGSGKT  LV R+  L+     P +LL LT T+ AA EM         
Sbjct: 34  SAPAGPILVIAGAGSGKTRTLVHRLAYLVEQGVAPESLLLLTFTRKAAQEM--------- 84

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKVQTIHAFCEAIMQ 145
                                     +++A HLL   +  +  GG    T HA    I++
Sbjct: 85  --------------------------IARAGHLLPDASCRQVTGG----TFHATANLILR 114

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           ++       ++F I D+  ++ +I   K S
Sbjct: 115 RYAAHVGYRANFTILDQGDAEGIINLLKSS 144


>gi|197122458|ref|YP_002134409.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196172307|gb|ACG73280.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 726

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 28/50 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT  L  RV RL+     P  +L LT T  AA EM  RV E+
Sbjct: 40 VIAGAGSGKTRTLTWRVARLVADGVAPEGILLLTFTNKAAREMLRRVEEV 89


>gi|302380542|ref|ZP_07269007.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
 gi|302311485|gb|EFK93501.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
          Length = 967

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 44/209 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I  +++++L  S   ++  V+A AG+GKT ++ +R   +        +++C+T T  AA
Sbjct: 1   MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+++ +     + D                                    + V T
Sbjct: 61  DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC+ I+       +I   F I +++Q+ KL+ E     +   +L+N  +  K     
Sbjct: 85  ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNE-----IFDKILENRIDFIKKLGRK 139

Query: 196 LEISNDEDIETL---ISDIISNRTALKLI 221
           L+IS  + ++ +    + + +N    KLI
Sbjct: 140 LDISYSDTLKIIRDSFNKLRTNNIDFKLI 168


>gi|169824301|ref|YP_001691912.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
 gi|167831106|dbj|BAG08022.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
          Length = 967

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 44/209 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I  +++++L  S   ++  V+A AG+GKT ++ +R   +        +++C+T T  AA
Sbjct: 1   MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+++ +     + D                                    + V T
Sbjct: 61  DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC+ I+       +I   F I +++Q+ KL+ E     +   +L+N  +  K     
Sbjct: 85  ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNE-----IFDKILENRIDFIKKLGRK 139

Query: 196 LEISNDEDIETL---ISDIISNRTALKLI 221
           L+IS  + ++ +    + + +N    KLI
Sbjct: 140 LDISYSDTLKIIRDSFNKLRTNNIDFKLI 168


>gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822066|gb|ABG97350.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 828

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 40/136 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL      P  +L +T T  AAAEM  RV  ++        
Sbjct: 51  IVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAHLV-------- 102

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                      G + N                    + V T H+ C  I++ Q  L   +
Sbjct: 103 -----------GPRANS-------------------MWVSTFHSSCVRILRAQAALLPGL 132

Query: 154 TSHFAIADEEQSKKLI 169
            S+F+I D + S++L+
Sbjct: 133 NSNFSIYDADDSRRLL 148


>gi|24373706|ref|NP_717749.1| exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1]
 gi|24348071|gb|AAN55193.1|AE015657_5 exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1]
          Length = 1259

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 15/156 (9%)

Query: 22  SEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHT 71
           + Q L  DP       S  + A+AG+GKT+ +    LRLLL +     L C     +T T
Sbjct: 6   TSQALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLSCEQILVVTFT 65

Query: 72  KAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            AA  E+  R+   I       L  EI    +  +  K P +S+ + A       L++  
Sbjct: 66  NAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTP-ESERAIALRRFDLALKSLD 124

Query: 130 GLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEE 163
              + TIH FC+ I+     E+++   S F + D E
Sbjct: 125 EAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSE 160


>gi|319947958|ref|ZP_08022138.1| UvrD/REP helicase [Dietzia cinnamea P4]
 gi|319438386|gb|EFV93326.1| UvrD/REP helicase [Dietzia cinnamea P4]
          Length = 1140

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 25/127 (19%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86
           +D   + +V A AG+GKT+ LV+R+  LLL +A P   +  +T T+ AAAE+  R     
Sbjct: 15  TDTAATLFVEAGAGTGKTYALVRRLSTLLLDDAVPIDRIAAITFTEKAAAELRDR----- 69

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                     L   + + + +   ++D + A       L+T     + T+H+F   ++ +
Sbjct: 70  ----------LRVHLVERRAEGDTRADKALAG------LDTAA---IGTLHSFALRLLSE 110

Query: 147 FPLEANI 153
            PLEA I
Sbjct: 111 NPLEAGI 117


>gi|290889814|ref|ZP_06552901.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429]
 gi|290480424|gb|EFD89061.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429]
          Length = 1186

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
          ++A  P  +  V+A+AGSGKT +L++ V + LL+       L  T T AAA EM +R+ +
Sbjct: 10 VIAHIPDHNLLVAASAGSGKTTVLIEHVYQQLLSGKSIDRFLISTFTDAAALEMKNRLEK 69

Query: 85 IITA 88
           I A
Sbjct: 70 RIRA 73


>gi|254282526|ref|ZP_04957494.1| DNA helicase II [gamma proteobacterium NOR51-B]
 gi|219678729|gb|EED35078.1| DNA helicase II [gamma proteobacterium NOR51-B]
          Length = 718

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          Q +A++P+    V A AGSGKT +LV R+  L+ A N  P+ +L +T T  AA EM  R+
Sbjct: 16 QAVAAEPSHQL-VLAGAGSGKTRVLVHRIAWLIRAENYSPNAVLAVTFTNKAAREMRGRI 74

Query: 83 LEIITAWSH 91
            ++   +H
Sbjct: 75 ESMLQLPTH 83


>gi|197121750|ref|YP_002133701.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196171599|gb|ACG72572.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 1195

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 21/139 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           VSA AGSGKT  LV+  +RLL  +A      P  L  +T T+ AA E+            
Sbjct: 23  VSAGAGSGKTTALVELCVRLLEGSALGSPCEPRALAAITFTEKAAEEL------------ 70

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +E L A +T          +  +AR  L   L     + V TIH FC  ++++   E
Sbjct: 71  ---EERLRAAVTARARAAREAPESPEARAWL-ERLHGLDAMAVGTIHGFCGRLLREHAPE 126

Query: 151 ANITSHFAIADEEQSKKLI 169
           A +    A+ DE+++   I
Sbjct: 127 AGLDPEAAVLDEDRASAWI 145


>gi|160895394|ref|ZP_02076164.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50]
 gi|156862965|gb|EDO56396.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50]
          Length = 1247

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 44/211 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPS-------TLL 66
           IS T  ++ + +    +  VSA AGSGKT +LV+R+L +++   A+ + +        +L
Sbjct: 3   ISWTDEQKSVINSRHGNLLVSAAAGSGKTAVLVERILEMVMGVDADGNKAEEKIDIDEVL 62

Query: 67  CLTHTKAAAAEMSHRVLEII--TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            +T T+AAAA+M  ++ + +   A  H  DE +  +++ +      ++D           
Sbjct: 63  VVTFTRAAAAQMKEKIADKLEQAAEDHPEDEHIVKQLSLLP-----RAD----------- 106

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                   + TI +FC  I++ +     I S F IAD  +    ++  K   L  ++   
Sbjct: 107 --------IMTIDSFCLGIVKDYFQMIGIDSSFDIADNAE----MDLIKNDILDEVLEQK 154

Query: 185 NEELKKAFYEILEI----SNDEDIETLISDI 211
            +E    F  +++      +DE I  L+  I
Sbjct: 155 YQEASDEFIGLVDSFARKESDEKIRELVYQI 185


>gi|322411491|gb|EFY02399.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 1210

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 24/159 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW-SHLSD 94
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+ + + A  +  SD
Sbjct: 46  VSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELRERIEKKLYAQIAKTSD 105

Query: 95  EILSAEIT-KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            +L A +T ++Q        +S+A               + T+ AF + ++ ++     I
Sbjct: 106 PLLKAYLTDQLQA-------LSQA--------------DIGTMDAFAQKVLIRYGYSIGI 144

Query: 154 TSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           +  F I  D+ +   L+ +         M  ++  L KA
Sbjct: 145 SPQFRIMQDKAEQDILMRDVFSKLFEEFMTQDDSSLFKA 183


>gi|260199970|ref|ZP_05767461.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T46]
 gi|289442365|ref|ZP_06432109.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46]
 gi|289415284|gb|EFD12524.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46]
          Length = 769

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|215402750|ref|ZP_03414931.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           02_1987]
 gi|289744679|ref|ZP_06504057.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987]
 gi|289685207|gb|EFD52695.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|168183573|ref|ZP_02618237.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
 gi|237796712|ref|YP_002864264.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str.
          657]
 gi|182673320|gb|EDT85281.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
 gi|229262342|gb|ACQ53375.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str.
          657]
          Length = 738

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
          +DL ++   EQ  A+        + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1  MDLKNKLNKEQYEAATTIDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFT 60

Query: 72 KAAAAEMSHRV 82
            AA EM  R+
Sbjct: 61 NKAAGEMKERI 71


>gi|167847823|ref|ZP_02473331.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei B7210]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|166157034|emb|CAO79491.1| putative UvrD/REP helicase [uncultured candidate division WWE3
          bacterium EJ0ADIGA11YD11]
          Length = 710

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT ++ +R+  L+   N  P  +L LT T+ AA EM  RV +I+
Sbjct: 28 VVAGAGTGKTRVITERIRYLIKEKNVDPQEILALTFTEKAAQEMVDRVGDIM 79


>gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551]
 gi|31792138|ref|NP_854631.1| ATP dependent DNA helicase UVRD1 [Mycobacterium bovis AF2122/97]
 gi|57116803|ref|YP_177772.1| ATP-dependent DNA helicase II UVRD1 [Mycobacterium tuberculosis
           H37Rv]
 gi|121636874|ref|YP_977097.1| putative ATP dependent DNA helicase uvrD1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148660728|ref|YP_001282251.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148822158|ref|YP_001286912.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           F11]
 gi|167967811|ref|ZP_02550088.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           H37Ra]
 gi|224989345|ref|YP_002644032.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800024|ref|YP_003033025.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231256|ref|ZP_04924583.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C]
 gi|289555271|ref|ZP_06444481.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           605]
 gi|294996434|ref|ZP_06802125.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis 210]
 gi|297633471|ref|ZP_06951251.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           4207]
 gi|297730456|ref|ZP_06959574.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           R506]
 gi|306775079|ref|ZP_07413416.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu001]
 gi|306782007|ref|ZP_07420344.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu002]
 gi|306783628|ref|ZP_07421950.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu003]
 gi|306787992|ref|ZP_07426314.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu004]
 gi|306792329|ref|ZP_07430631.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu005]
 gi|306796727|ref|ZP_07435029.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu006]
 gi|306802615|ref|ZP_07439283.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu008]
 gi|306806794|ref|ZP_07443462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu007]
 gi|306966993|ref|ZP_07479654.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu009]
 gi|306971186|ref|ZP_07483847.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu010]
 gi|307078913|ref|ZP_07488083.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083471|ref|ZP_07492584.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu012]
 gi|313657784|ref|ZP_07814664.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           V2475]
 gi|61229774|sp|P0A5A3|PCRA_MYCTU RecName: Full=ATP-dependent DNA helicase pcrA
 gi|61229776|sp|P0A5A4|PCRA_MYCBO RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13880539|gb|AAK45224.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551]
 gi|31617726|emb|CAD93835.1| PROBABLE ATP DEPENDENT DNA HELICASE UVRD1 [Mycobacterium bovis
           AF2122/97]
 gi|41353625|emb|CAE55341.1| PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 [Mycobacterium
           tuberculosis H37Rv]
 gi|121492521|emb|CAL70989.1| Probable ATP dependent dna helicase uvrD1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600315|gb|EAY59325.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C]
 gi|148504880|gb|ABQ72689.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720685|gb|ABR05310.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           F11]
 gi|224772458|dbj|BAH25264.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321527|gb|ACT26130.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           1435]
 gi|289439903|gb|EFD22396.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           605]
 gi|308216426|gb|EFO75825.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu001]
 gi|308325244|gb|EFP14095.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331626|gb|EFP20477.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu003]
 gi|308335437|gb|EFP24288.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339243|gb|EFP28094.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342888|gb|EFP31739.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346806|gb|EFP35657.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350722|gb|EFP39573.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu008]
 gi|308355383|gb|EFP44234.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu009]
 gi|308359322|gb|EFP48173.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu010]
 gi|308363229|gb|EFP52080.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366886|gb|EFP55737.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720660|gb|EGB29738.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459767|gb|AEB05190.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           4207]
          Length = 771

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                KAR++ ++           T H+ C  I++ Q  L   +
Sbjct: 93  --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 122 NSNFSIYDADDSRRLLQ 138


>gi|323140468|ref|ZP_08075396.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT
           12067]
 gi|322415036|gb|EFY05827.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT
           12067]
          Length = 741

 Score = 44.3 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 41/141 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT +L  R+  LL     P  +L +T T  AAAEM  RV             
Sbjct: 25  ILAGAGSGKTKVLTCRIAHLLQQGVRPYRILAITFTNKAAAEMRERV------------- 71

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE--ANI 153
                         ++   + AR + +            T HAFC  ++ ++ LE     
Sbjct: 72  --------------DRMAGAAARDVWLF-----------TFHAFCARLL-RYELENLNGY 105

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
            ++FAI D   SK LI++  K
Sbjct: 106 ANNFAIYDTSDSKNLIKQVMK 126


>gi|301310959|ref|ZP_07216888.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3]
 gi|300831022|gb|EFK61663.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3]
          Length = 1055

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94
           A+AG+GKTH L    L LL +       +L +T T  A  EM  R+++ +   A    SD
Sbjct: 7   ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66

Query: 95  --EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             ++LS+  +  +     +    +AR +L+ IL       + TI  F +  M+ F  E  
Sbjct: 67  YIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIG 121

Query: 153 ITSHFAI 159
           +   + I
Sbjct: 122 LQGGYGI 128


>gi|171912708|ref|ZP_02928178.1| UvrD/REP helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 672

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          ID  ++   +Q  A + P   + V A AGSGKT +L  RV  LL     P  +L +T T 
Sbjct: 16 IDYRAELNEQQFAAVTAPAGQSLVIAGAGSGKTRVLTYRVAYLLDNGIAPENILLVTFTN 75

Query: 73 AAAAEMSHRVLEII 86
           A+ EM  RV  ++
Sbjct: 76 KASREMLDRVQNLL 89


>gi|320526748|ref|ZP_08027938.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei
          F0204]
 gi|320132716|gb|EFW25256.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei
          F0204]
          Length = 1107

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 6/83 (7%)

Query: 18 SQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTK 72
          +Q  +EQ +A + +     VSA+AG+GKT +LV R+++  + + +P    S +L LT T+
Sbjct: 7  NQLSAEQSVACNSSGMGIVVSASAGAGKTKVLVSRLVKRCIED-NPRVPLSRILALTFTE 65

Query: 73 AAAAEMSHRVLEIITAWSHLSDE 95
          AAA+EM  RV + +     L+++
Sbjct: 66 AAASEMKKRVAQELNEIKQLAEK 88


>gi|222529276|ref|YP_002573158.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456123|gb|ACM60385.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
          Length = 714

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  +L +  A+P+ +L +T T  AA EM  R+  +++  S
Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPANILAITFTNKAADEMKERIKRLVSTQS 79


>gi|169825828|ref|YP_001695986.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
 gi|168990316|gb|ACA37856.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
          Length = 749

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 13 TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
          T +L++    EQ  A   T     + A AGSGKT +L  R+  L++    +PS +L +T 
Sbjct: 5  TKNLLAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITF 64

Query: 71 TKAAAAEMSHRVLEII 86
          T  AA EM  R+  I+
Sbjct: 65 TNKAAREMRERIDGIL 80


>gi|139438971|ref|ZP_01772431.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC
           25986]
 gi|133775682|gb|EBA39502.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC
           25986]
          Length = 1210

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 37/152 (24%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEII 86
           R  +VSA AGSGKT  L +R++  L   + P       +L +T TK AAAE+  RV    
Sbjct: 19  RPLFVSAGAGSGKTFTLTRRIVYALSPESGPFVEHLDQVLAITFTKDAAAEIRDRVRRA- 77

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                L DE +  E   +                            + TIH  C  I++ 
Sbjct: 78  -----LIDEGMDEEALTVDDA------------------------WISTIHGMCSRILRA 108

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
             LE  I   F +  +  + +L+++A +  LA
Sbjct: 109 HALELGIDPEFTVLTD--TDELMDQAVEHVLA 138


>gi|262384055|ref|ZP_06077191.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B]
 gi|262294953|gb|EEY82885.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B]
          Length = 1055

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94
           A+AG+GKTH L    L LL +       +L +T T  A  EM  R+++ +   A    SD
Sbjct: 7   ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66

Query: 95  --EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             ++LS+  +  +     +    +AR +L+ IL       + TI  F +  M+ F  E  
Sbjct: 67  YIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIG 121

Query: 153 ITSHFAI 159
           +   + I
Sbjct: 122 LQGGYGI 128


>gi|256841725|ref|ZP_05547231.1| ATP-dependent helicase [Parabacteroides sp. D13]
 gi|256736619|gb|EEU49947.1| ATP-dependent helicase [Parabacteroides sp. D13]
          Length = 1055

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94
           A+AG+GKTH L    L LL +       +L +T T  A  EM  R+++ +   A    SD
Sbjct: 7   ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66

Query: 95  --EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             ++LS+  +  +     +    +AR +L+ IL       + TI  F +  M+ F  E  
Sbjct: 67  YIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIG 121

Query: 153 ITSHFAI 159
           +   + I
Sbjct: 122 LQGGYGI 128


>gi|255015776|ref|ZP_05287902.1| ATP-dependent helicase [Bacteroides sp. 2_1_7]
 gi|298377090|ref|ZP_06987044.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19]
 gi|298266074|gb|EFI07733.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19]
          Length = 1055

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94
           A+AG+GKTH L    L LL +       +L +T T  A  EM  R+++ +   A    SD
Sbjct: 7   ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66

Query: 95  --EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             ++LS+  +  +     +    +AR +L+ IL       + TI  F +  M+ F  E  
Sbjct: 67  YIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIG 121

Query: 153 ITSHFAI 159
           +   + I
Sbjct: 122 LQGGYGI 128


>gi|78184983|ref|YP_377418.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
           CC9902]
 gi|78169277|gb|ABB26374.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus
           sp. CC9902]
          Length = 1208

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM----SHRVLEIITAWS 90
           + A+AG+GKT  L    LRL+   A+P   LL +T+T+AAA E+      R+ + +    
Sbjct: 19  LEASAGTGKTFALAHLTLRLITEAAYPLEALLVVTYTEAAAEELRSRIGQRLQQALVGLE 78

Query: 91  HLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            L +E+  +    +      +    +D       L+  LE      + TIH FC   +++
Sbjct: 79  QLENEMFPSAPDPVMAAWWEQCTASADRRIRIRRLLVALEQLDRADIATIHGFCRRSLRR 138

Query: 147 FPLE 150
             L+
Sbjct: 139 LALD 142


>gi|320536129|ref|ZP_08036182.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
           F0421]
 gi|320147046|gb|EFW38609.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
           F0421]
          Length = 664

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 53/137 (38%), Gaps = 38/137 (27%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT ++  R+  +L      S +L LT T  AA EM  R+ E+            
Sbjct: 26  AGAGSGKTRVITFRIAHMLDRGIPQSQILALTFTNKAAREMEERIKELT----------- 74

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                   GKK                      L V T HAF   I+++        S+F
Sbjct: 75  --------GKKLQN-------------------LTVSTFHAFGVKILREHIAALGWRSNF 107

Query: 158 AIADEEQSKKLIEEAKK 174
           +I DE    +LI+E  K
Sbjct: 108 SIYDETDRNQLIKELGK 124


>gi|303326130|ref|ZP_07356573.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
 gi|302864046|gb|EFL86977.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
          Length = 1125

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           H+   E   +  L S+ ++  L A        + A  G+GKT +L+ R+ RLL   A P 
Sbjct: 504 HSEPAEQPASATLFSEEQNAALNAG--PGPVLILAGPGAGKTRVLIGRLQRLLEEGARPQ 561

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            LL +T T+ AA E+  R   +  A  HLS
Sbjct: 562 DLLAVTFTRRAAGELRER---LSAALPHLS 588


>gi|120610596|ref|YP_970274.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1]
 gi|120589060|gb|ABM32500.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1]
          Length = 818

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
          L+     EQL A + P   A + A AGSGKT +L  R+  LL    A P ++L +T T  
Sbjct: 31 LLQNLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYASPGSILAVTFTNK 90

Query: 74 AAAEMSHRV 82
          AA EM+ R+
Sbjct: 91 AAKEMTARL 99


>gi|159902871|ref|YP_001550215.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211]
 gi|159888047|gb|ABX08261.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211]
          Length = 809

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+      PS +L +T T  AA EM  R LE+         
Sbjct: 29  VVAGAGSGKTRALTHRIAHLITEYKVDPSEILAVTFTNKAAREMKER-LEL--------- 78

Query: 95  EILSAEITKIQGKKPNKS-DMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +L+  I K Q  +P  S  + +       I  E    L + T HA    ++ +F +E  
Sbjct: 79  -LLAKRIAKYQLDQPWSSVSLVEQNQFRTRIYREVTKDLWIGTFHALFSKLL-RFDIEKF 136

Query: 153 I-------TSHFAIADEEQSKKLIEE 171
           +       T +F+I DE  ++ LI+E
Sbjct: 137 VDKEGLKWTKYFSIYDETDAQSLIKE 162


>gi|13358064|ref|NP_078338.1| DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762416|ref|YP_001752584.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str.
          ATCC 27815]
 gi|171920094|ref|ZP_02931516.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str.
          ATCC 27813]
 gi|183508498|ref|ZP_02958027.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14
          str. ATCC 33697]
 gi|186701747|ref|ZP_02971434.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str.
          ATCC 27818]
 gi|11267430|pir||D82883 DNA helicase II UU501 [imported] - Ureaplasma urealyticum
 gi|6899500|gb|AAF30913.1|AE002148_5 DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827993|gb|ACA33255.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str.
          ATCC 27815]
 gi|171902450|gb|EDT48739.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str.
          ATCC 27813]
 gi|182675926|gb|EDT87831.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14
          str. ATCC 33697]
 gi|186701018|gb|EDU19300.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str.
          ATCC 27818]
          Length = 743

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT +L  R+  L+   N HPS +L  T T  AA EM  RV + I
Sbjct: 27 VIAGAGTGKTSVLTLRIAYLITEKNIHPSRILGFTFTNKAADEMKERVGKTI 78


>gi|310643059|ref|YP_003947817.1| recombination helicase adda [Paenibacillus polymyxa SC2]
 gi|309248009|gb|ADO57576.1| Recombination helicase AddA [Paenibacillus polymyxa SC2]
          Length = 1339

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V+A AGSGKT +LV+R++R ++          LL  T TKAAAAEM  R+ E +
Sbjct: 35 VAAAAGSGKTAVLVERIIRKIVDPRLGFSVDRLLVATFTKAAAAEMRQRIREAL 88


>gi|307565702|ref|ZP_07628171.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS
          21A-A]
 gi|307345528|gb|EFN90896.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS
          21A-A]
          Length = 845

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + V A AGSGKT +L  ++  LL +   P  +L LT T  AA EM  R+ +I
Sbjct: 27 SLVVAGAGSGKTRVLTYKIAYLLESGLKPWNILALTFTNKAAREMKDRIAKI 78


>gi|221202128|ref|ZP_03575163.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M]
 gi|221209064|ref|ZP_03582059.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2]
 gi|221171059|gb|EEE03511.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2]
 gi|221177922|gb|EEE10334.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M]
          Length = 781

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 108 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 156

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 157 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 202

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 203 PQFSIMDSDDCFGMIQEQIGTT 224


>gi|53724405|ref|YP_104505.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344]
 gi|121598749|ref|YP_994582.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1]
 gi|124385848|ref|YP_001027516.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229]
 gi|126450982|ref|YP_001082587.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247]
 gi|238561590|ref|ZP_00441881.2| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4]
 gi|254174927|ref|ZP_04881588.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399]
 gi|254201583|ref|ZP_04907947.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH]
 gi|254206917|ref|ZP_04913268.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU]
 gi|254357473|ref|ZP_04973747.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280]
 gi|52427828|gb|AAU48421.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344]
 gi|121227559|gb|ABM50077.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1]
 gi|124293868|gb|ABN03137.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229]
 gi|126243852|gb|ABO06945.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247]
 gi|147747477|gb|EDK54553.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH]
 gi|147752459|gb|EDK59525.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU]
 gi|148026537|gb|EDK84622.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280]
 gi|160695972|gb|EDP85942.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399]
 gi|238524389|gb|EEP87822.1| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4]
          Length = 700

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|222053487|ref|YP_002535849.1| UvrD/REP helicase [Geobacter sp. FRC-32]
 gi|221562776|gb|ACM18748.1| UvrD/REP helicase [Geobacter sp. FRC-32]
          Length = 746

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 48/160 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT ++V R+  L+     P   +L +T T  AAAEM  RV +++        
Sbjct: 24  ILAGAGSGKTRVIVHRIAYLITERGVPPWQILAVTFTNKAAAEMRGRVEKLL-------- 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEAN 152
                                            PGG    + T H+ C  I+++      
Sbjct: 76  ---------------------------------PGGETPLISTFHSACARILRREIHHLG 102

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             S FAI D++  +KLI+E     +A + LD      K F
Sbjct: 103 YDSSFAIYDDKDGEKLIKE----IVAELHLDEKRFPAKLF 138


>gi|312601375|gb|ADQ90630.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 168]
          Length = 753

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AG+GKT +L +++  ++  + A+PS +L LT T  AA EM +RV +++        
Sbjct: 27  IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153
                                          E    +++ T H+ C  I++   LEA NI
Sbjct: 80  -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 105

Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203
                       F I DE+  KK++E+     L +   D+ +E K  AF  I  ISN ++
Sbjct: 106 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKA--NDDRDETKISAFDAIKFISNAKN 163

Query: 204 IETLISDII 212
            E    D++
Sbjct: 164 WEKSPEDLL 172


>gi|223041651|ref|ZP_03611848.1| DNA helicase II [Actinobacillus minor 202]
 gi|223017515|gb|EEF15929.1| DNA helicase II [Actinobacillus minor 202]
          Length = 731

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 36/137 (26%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           S P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T  AAAEM  R+    
Sbjct: 19  SAPIGNYLVLAGAGSGKTRVLTHRIAWLIGIENIPESNILAVTFTNKAAAEMRQRI---- 74

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                                   ++ + ++ H +        G+ V T H+    +++ 
Sbjct: 75  ------------------------EATLEQSSHNMF-------GMWVGTFHSIANRLLRS 103

Query: 147 FPLEANITSHFAIADEE 163
             L+AN+   F I D E
Sbjct: 104 HYLDANLPQDFQIMDTE 120


>gi|54020194|ref|YP_115928.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 232]
 gi|53987367|gb|AAV27568.1| ATP-dependent DNA helicase [Mycoplasma hyopneumoniae 232]
          Length = 769

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AG+GKT +L +++  ++  + A+PS +L LT T  AA EM +RV +++        
Sbjct: 43  IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 95

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153
                                          E    +++ T H+ C  I++   LEA NI
Sbjct: 96  -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 121

Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203
                       F I DE+  KK++E+     L +   D+ +E K  AF  I  ISN ++
Sbjct: 122 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKAN--DDRDETKISAFDAIKFISNAKN 179

Query: 204 IETLISDII 212
            E    D++
Sbjct: 180 WEKSPEDLL 188


>gi|73540567|ref|YP_295087.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134]
 gi|72117980|gb|AAZ60243.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134]
          Length = 786

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          DL++   +EQL A + P   A + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3  DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTN 62

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  ++
Sbjct: 63 KAAKEMQTRLSSML 76


>gi|261400846|ref|ZP_05986971.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970]
 gi|269209307|gb|EEZ75762.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970]
          Length = 733

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 49/187 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++        
Sbjct: 20  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML-------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                        KP                    GL + T HA    I+++        
Sbjct: 72  ------------PKPQTR-----------------GLTICTFHALGMKILREEANHIGYK 102

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210
            +F+I D   S K+I E    T         E + KA ++I    ND    ED+    S+
Sbjct: 103 KNFSILDSTDSAKIIGELLGGT-------GKEAIFKAQHQISLWKNDLKTPEDVLQTASN 155

Query: 211 IISNRTA 217
           I   +TA
Sbjct: 156 IWEQQTA 162


>gi|71893767|ref|YP_279213.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J]
          Length = 748

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AG+GKT +L +++  ++  + A+PS +L LT T  AA EM +RV +++        
Sbjct: 22  IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153
                                          E    +++ T H+ C  I++   LEA NI
Sbjct: 75  -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 100

Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203
                       F I DE+  KK++E+     L +   D+ +E K  AF  I  ISN ++
Sbjct: 101 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKAN--DDRDETKISAFDAIKFISNAKN 158

Query: 204 IETLISDII 212
            E    D++
Sbjct: 159 WEKSPEDLL 167


>gi|53720964|ref|YP_109950.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243]
 gi|126441529|ref|YP_001060912.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668]
 gi|126451499|ref|YP_001068210.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a]
 gi|134281638|ref|ZP_01768346.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305]
 gi|217424087|ref|ZP_03455587.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576]
 gi|226193195|ref|ZP_03788805.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan
           9]
 gi|242314228|ref|ZP_04813244.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b]
 gi|254183976|ref|ZP_04890567.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655]
 gi|254186442|ref|ZP_04892959.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261078|ref|ZP_04952132.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a]
 gi|52211378|emb|CAH37368.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243]
 gi|126221022|gb|ABN84528.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668]
 gi|126225141|gb|ABN88681.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a]
 gi|134247305|gb|EBA47391.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305]
 gi|157934127|gb|EDO89797.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur
           52237]
 gi|184214508|gb|EDU11551.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655]
 gi|217393150|gb|EEC33172.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576]
 gi|225934795|gb|EEH30772.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan
           9]
 gi|242137467|gb|EES23869.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b]
 gi|254219767|gb|EET09151.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a]
          Length = 695

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|320104388|ref|YP_004179979.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
 gi|319751670|gb|ADV63430.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
          Length = 841

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ +R+  L+ + A  S++L +T T  AA EM  R+ +I+
Sbjct: 42 VLAGAGSGKTRVITRRIAYLIRSGAVGSSILAITFTNKAAGEMKRRIEDIV 92


>gi|295095005|emb|CBK84096.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Coprococcus sp.
           ART55/1]
          Length = 1280

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 32/189 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL---------LANAHPST---LLCLTHTKAAAAEMSHRVL 83
           VSA AGSGKT +LV+R++ ++         +  + P +   LL +T T AAAA+M  ++ 
Sbjct: 30  VSAAAGSGKTAVLVERIIEMVAGRNSRGDRIEGSEPVSVDELLVVTFTNAAAAQMKEKI- 88

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                      + L  +I ++  K      + K   L+           + TI +FC  I
Sbjct: 89  ----------GQALQKKIDEMMAKGEYDEHLIKQMTLI-------NHADICTIDSFCLRI 131

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++++     +   F IAD+ + K +  +     +   M   +E +   F  ++      +
Sbjct: 132 VKEYFARVELDCAFGIADDTEMKIIKHDVMDQVME--MCYEDESVVPGFDRLIMTFARNE 189

Query: 204 IETLISDII 212
            ++ + DI+
Sbjct: 190 SDSAVPDIV 198


>gi|297567904|ref|YP_003686874.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296852353|gb|ADH65366.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 646

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 28 SDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          +DP R     A V A AG+GKT  L QRV  L+     P ++  +T T  AA EM  R+ 
Sbjct: 2  NDPIRHKEGPALVFAGAGAGKTRTLTQRVKWLVEEGEDPYSITLVTFTNKAAGEMKERIA 61

Query: 84 EIITA 88
           ++ A
Sbjct: 62 RLVEA 66


>gi|194334487|ref|YP_002016347.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194312305|gb|ACF46700.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 743

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 39/162 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           D++ Q    Q  A   T     V A AGSGKT ++  R+  L+      P  +L LT T 
Sbjct: 3   DILQQLNDVQRQAVQTTSGPVMVLAGAGSGKTRVITYRIAYLIEQERVEPHQILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HR+           D++L    T+                          GL 
Sbjct: 63  KAAKEMRHRI-----------DQLLHQGSTR--------------------------GLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           + T H+    I++ +       S+F+I D + SK L+++  K
Sbjct: 86  IGTFHSVFARILRNYIHLIGYNSNFSIYDSDDSKSLVKQVMK 127


>gi|312794911|ref|YP_004027833.1| ATP-dependent DNA helicase rep [Burkholderia rhizoxinica HKI 454]
 gi|312166686|emb|CBW73689.1| ATP-dependent DNA helicase rep (EC 3.6.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 714

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 21  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 70  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAAHVGLK 115

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 116 PQFSIMDADDCFAMIQEQIGTT 137


>gi|312793467|ref|YP_004026390.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180607|gb|ADQ40777.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 714

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  +L +  A+P  +L +T T  AA EM  R+  +++  S
Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFTNKAADEMKERIKRLVSTQS 79


>gi|302392152|ref|YP_003827972.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501]
 gi|302204229|gb|ADL12907.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501]
          Length = 1033

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD- 94
           + A+AG+GKT+ L    +  LL       ++ +T T+ A AE+  R+ E      HL D 
Sbjct: 5   LKASAGTGKTYRLSLEYVAALLRGEDFGKIVVMTFTRKATAEIRERIFE------HLEDI 58

Query: 95  --EILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             E   +E+ K   +  N  + D+S+   +   +L     +KV TI +F   I ++    
Sbjct: 59  LAEGAESEVVKNLEEIYNDLEVDLSQLEEVYEKMLCNKDQIKVYTIDSFINHIFREAIAP 118

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TL 207
                 + I D++Q+++++E   K  L      NN    K   + L  + + DI+   TL
Sbjct: 119 YLGIYSYEIVDDDQNREIVERVFKELL------NNPADFKLMEDFLLENVERDIDNYLTL 172

Query: 208 ISDIISNRTALKLI 221
           I  +I +R    LI
Sbjct: 173 IDRLIKDRWKFLLI 186


>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040629|gb|ACT57425.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
          Length = 685

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 45/150 (30%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT +L+ R+L L+      PS +L +T T  A  EM +R+        +L ++I
Sbjct: 50  AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA------CYLGEKI 103

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                              ++QT H+FC +I+++      + + 
Sbjct: 104 ----------------------------------PRIQTFHSFCASILRKHGEVVGLPTD 129

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           FAI D  +S+ +I    K  L  + +D+ +
Sbjct: 130 FAILDSAESRTII----KQLLKDLQIDDKD 155


>gi|188588674|ref|YP_001919827.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498955|gb|ACD52091.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 749

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 39/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  ++      P  +L +T T  AA EM  RV+ +I          
Sbjct: 26  AGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFTNKAAKEMKDRVISLIG--------- 76

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                             SKA ++ I+           T H+ C  I+++   +   TS+
Sbjct: 77  ------------------SKAENMWIS-----------TFHSTCVRILRREIDKIGYTSN 107

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D    K LI+E  K
Sbjct: 108 FTIYDTSDQKVLIKECMK 125


>gi|90414255|ref|ZP_01222235.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
 gi|90324702|gb|EAS41243.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
          Length = 724

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A   +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLMQIEQASSYSIMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E+                  +QG                    +  G+ 
Sbjct: 65  KAAAEMRGRINEL------------------MQG--------------------SSAGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  +++   L+A +   F I D +   +L+
Sbjct: 87  NGTFHGLCHRMLRAHYLDARLPDDFNILDSDDQMRLL 123


>gi|32474455|ref|NP_867449.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
 gi|32444993|emb|CAD74995.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
 gi|327539457|gb|EGF26072.1| ATP-dependent DNA helicase PcrA [Rhodopirellula baltica WH47]
          Length = 671

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 28/133 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT ++  R+  L+     P  +L +T T  AA EM  RV E++         
Sbjct: 26  VLAGAGTGKTRVVTFRIANLIKHGVKPDRILAVTFTNKAAGEMQDRVGELL--------- 76

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                     G K  K    +         + P    + T HA C  I+++        +
Sbjct: 77  ----------GYKNQKRKRGQ---------KAPPKPTISTFHAQCVRILREHAPAIGFPA 117

Query: 156 HFAIADEEQSKKL 168
            FAI D    + L
Sbjct: 118 TFAIYDRSDQESL 130


>gi|326797393|ref|YP_004315213.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
 gi|326548157|gb|ADZ93377.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
          Length = 736

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +D ++  + E + A  P +++ V A AGSGKT +LV R+  L+ A    P +L+ +T T 
Sbjct: 7  LDALNDKQREAVAA--PLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMAVTFTN 64

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+ +++
Sbjct: 65 KAAREMQGRIEQLV 78


>gi|319404491|emb|CBI78098.1| DNA helicase II [Bartonella rochalimae ATCC BAA-1498]
          Length = 815

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L L  AHP  +L +T T  AA EM  R+ E++
Sbjct: 63  VLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEMKTRIGELV 114


>gi|167582799|ref|ZP_02375673.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis TXDOH]
          Length = 695

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|148273735|ref|YP_001223296.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831665|emb|CAN02634.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 816

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 39/147 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+ +  A PS +L +T T  AAAEM  RV  ++   S    
Sbjct: 55  IVAGAGSGKTRVLTHRIASLIESREAWPSQILAITFTNKAAAEMRERVESLLGQASE--- 111

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                              G+ + T H+ C  I+++       T
Sbjct: 112 -----------------------------------GMWISTFHSACVRILRREAEAFGFT 136

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIM 181
            +F I D   S+ LI+   K   A  +
Sbjct: 137 QNFTIYDSADSRVLIKRIIKQLDADTL 163


>gi|260906166|ref|ZP_05914488.1| putative ATP-dependent DNA helicase II [Brevibacterium linens BL2]
          Length = 850

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+   L    AHP  +L +T T  AA EM+ RV  I+   S    
Sbjct: 43  IVAGAGSGKTTVLTRRIAYALATGRAHPGEVLAITFTNKAAKEMAERVRSIVGPASR--- 99

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I+++      + 
Sbjct: 100 -----------------------------------AMWVSTFHSSCVRILRREAKVLGMK 124

Query: 155 SHFAIADEEQSKKLIEEAKK 174
           S+F I D + +++L+ +  K
Sbjct: 125 SNFTIYDSQDAQRLVSQILK 144


>gi|298387758|ref|ZP_06997309.1| UvrD/REP helicase domain-containing protein [Bacteroides sp.
           1_1_14]
 gi|298259614|gb|EFI02487.1| UvrD/REP helicase domain-containing protein [Bacteroides sp.
           1_1_14]
          Length = 1057

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I  + K+  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETKRTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|237814293|ref|YP_002898744.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346]
 gi|237505661|gb|ACQ97979.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346]
          Length = 695

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|144227619|gb|AAZ44502.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J]
          Length = 753

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AG+GKT +L +++  ++  + A+PS +L LT T  AA EM +RV +++        
Sbjct: 27  IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153
                                          E    +++ T H+ C  I++   LEA NI
Sbjct: 80  -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 105

Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203
                       F I DE+  KK++E+     L +   D+ +E K  AF  I  ISN ++
Sbjct: 106 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKA--NDDRDETKISAFDAIKFISNAKN 163

Query: 204 IETLISDII 212
            E    D++
Sbjct: 164 WEKSPEDLL 172


>gi|150389970|ref|YP_001320019.1| UvrD/REP helicase [Alkaliphilus metalliredigens QYMF]
 gi|149949832|gb|ABR48360.1| UvrD/REP helicase [Alkaliphilus metalliredigens QYMF]
          Length = 678

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
            V A  GSGKT ++ +RV  L+ + + +P  +L +T TKAAA EM +R
Sbjct: 24 CMVYAGPGSGKTRVITERVSYLINVGHVNPREILVITFTKAAAEEMKNR 72


>gi|319788629|ref|YP_004148104.1| exodeoxyribonuclease V subunit beta [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467141|gb|ADV28873.1| exodeoxyribonuclease V, beta subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1205

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS- 93
           + A+AG+GKT  L   V+RL+L  A P   +L +T T+AA  E+  RV + +   + ++ 
Sbjct: 18  IEASAGTGKTFTLATLVVRLVLERALPVERILAVTFTEAATQELRSRVRKRLVLAAEVAA 77

Query: 94  ---------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                    +  L+A++ +       +     AR L +   ++     V TIH FC  ++
Sbjct: 78  GTVPADGPGEAQLTAQLLQAHLDASGEEITQVARRLRLAA-DSIDQAAVFTIHGFCARVL 136

Query: 145 QQFPLEA 151
           ++  LE+
Sbjct: 137 REHALES 143


>gi|144575418|gb|AAZ53772.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448]
          Length = 753

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AG+GKT +L +++  ++  + A+PS +L LT T  AA EM +RV +++        
Sbjct: 27  IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153
                                          E    +++ T H+ C  I++   LEA NI
Sbjct: 80  -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 105

Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203
                       F I DE+  KK++E+     L +   D+ +E K  AF  I  ISN ++
Sbjct: 106 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKA--NDDRDETKISAFDAIKFISNAKN 163

Query: 204 IETLISDII 212
            E    D++
Sbjct: 164 WEKSPEDLL 172


>gi|88608415|ref|YP_506245.1| UvrD/Rep family helicase [Neorickettsia sennetsu str. Miyayama]
 gi|88600584|gb|ABD46052.1| helicase, UvrD/Rep family [Neorickettsia sennetsu str. Miyayama]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
          I     EQ LA +       + A AG+GKT  LV R+  L+ +  AHP+ ++ +T    A
Sbjct: 13 IMNLNDEQRLAVETVNGPVLILAGAGTGKTKTLVHRIAHLIRSGYAHPNQIMAVTFANKA 72

Query: 75 AAEMSHRVLEII 86
          A EM  RV EI+
Sbjct: 73 ANEMIQRVNEIV 84


>gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
 gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
          Length = 830

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 40/141 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL      P  +L +T T  AAAEM  RV  ++        
Sbjct: 52  IVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFTNKAAAEMRERVAALV-------- 103

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                      G + N                    + V T H+ C  I++ Q  L   +
Sbjct: 104 -----------GPRAN-------------------AMWVSTFHSSCVRILRAQAALLPGL 133

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
            S+F+I D + S++L+    K
Sbjct: 134 NSNFSIYDSDDSRRLLTMISK 154


>gi|168334212|ref|ZP_02692415.1| ATP-dependent DNA helicase PcrA [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 731

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 38/138 (27%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L QR+  L+      P  +L +T T  AAAEM  R+       + + +++
Sbjct: 22  AGAGSGKTRVLTQRIANLIENHQVQPWEILAITFTNKAAAEMRERMT------NDVGEDV 75

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           L                                 + + T H+ C  I+++F      T +
Sbjct: 76  LK-------------------------------NMWISTFHSMCVRILRRFGESIGYTKY 104

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D  + K  I++  K
Sbjct: 105 FTIYDSAEQKITIKDVMK 122


>gi|197117725|ref|YP_002138152.1| UvrD superfamily ATP-dependent helicase [Geobacter bemidjiensis
          Bem]
 gi|197087085|gb|ACH38356.1| ATP-dependent helicase, UvrD superfamily [Geobacter bemidjiensis
          Bem]
          Length = 678

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
          +S+   EQL A   T  A  V A AGSGKT ++  R+  L+L     P  +L +T T  A
Sbjct: 4  LSRLNPEQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLILDKKVPPDQVLAVTFTNKA 63

Query: 75 AAEMSHRV 82
          A EM  RV
Sbjct: 64 AKEMKERV 71


>gi|78188740|ref|YP_379078.1| exodeoxyribonuclease V, beta subunit [Chlorobium chlorochromatii
           CaD3]
 gi|78170939|gb|ABB28035.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium
           chlorochromatii CaD3]
          Length = 1207

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 15/126 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +    +RLLL     P  +L +T+T+AA  E+  R       VLE+  
Sbjct: 19  IEASAGTGKTYAIASLYVRLLLEKQLLPEQILVVTYTEAATQELRGRIRSRIREVLEVFE 78

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
             +  SD I    + ++  +   + D  + +AR  L+  L       + TIH FC  ++Q
Sbjct: 79  G-AATSDAI----VQRLYDQALEQGDDMVERARMALVQALALFDTAAIFTIHGFCLRVLQ 133

Query: 146 QFPLEA 151
           +   E+
Sbjct: 134 EHAFES 139


>gi|240950109|ref|ZP_04754404.1| DNA-dependent helicase II [Actinobacillus minor NM305]
 gi|240295410|gb|EER46179.1| DNA-dependent helicase II [Actinobacillus minor NM305]
          Length = 731

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 36/137 (26%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           S P  +  V A AGSGKT +L  R+  L+ + N   S +L +T T  AAAEM  R+    
Sbjct: 19  SAPIGNYLVLAGAGSGKTRVLTHRIAWLIGIENIPESNILAVTFTNKAAAEMRQRI---- 74

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                                   ++ + ++ H +        G+ V T H+    +++ 
Sbjct: 75  ------------------------EATLEQSSHNMF-------GMWVGTFHSIANRLLRS 103

Query: 147 FPLEANITSHFAIADEE 163
             L+AN+   F I D E
Sbjct: 104 HYLDANLPQDFQIMDTE 120


>gi|126649601|ref|ZP_01721842.1| PcrA [Bacillus sp. B14905]
 gi|126593926|gb|EAZ87849.1| PcrA [Bacillus sp. B14905]
          Length = 750

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 13 TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
          T +L++    EQ  A   T     + A AGSGKT +L  R+  L++    +PS +L +T 
Sbjct: 5  TKNLLAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITF 64

Query: 71 TKAAAAEMSHRVLEII 86
          T  AA EM  R+  I+
Sbjct: 65 TNKAAREMRERIDGIL 80


>gi|119493842|ref|ZP_01624409.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106]
 gi|119452434|gb|EAW33623.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106]
          Length = 784

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 25/201 (12%)

Query: 11  SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           ++T+D +S     Q  A +       V A AGSGKT  L  R+  LL  +  HP  +L +
Sbjct: 2   TQTVDFLSHLNPSQRQAVEHFCGPMLVVAGAGSGKTRALTYRIANLLRTHRVHPENILAV 61

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--E 126
           T T  AA E+  RV           + I S +  + Q +KP  +  S  +  L + +   
Sbjct: 62  TFTNKAAREIKERV-----------EAIFSEQQAQTQYQKPFSALTSPEQTNLRSQVYRS 110

Query: 127 TPGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180
               L + T H+ C  I++    ++  E       +F+I DE  ++ L+   K+     +
Sbjct: 111 VSKQLWMGTFHSLCARILRYDINKYTDEKGRQWQQNFSIFDESDAQSLV---KQIVTKEL 167

Query: 181 MLDNNE-ELKKAFYEILEISN 200
            LD+ + E +K  Y+I    N
Sbjct: 168 NLDDKKFEPRKVRYQISNAKN 188


>gi|312876019|ref|ZP_07736008.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797217|gb|EFR13557.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 714

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  +L +  A+P  +L +T T  AA EM  R+  +++  S
Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFTNKAADEMKERIKRLVSTQS 79


>gi|283768593|ref|ZP_06341505.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa
          W1219]
 gi|283104985|gb|EFC06357.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa
          W1219]
          Length = 1039

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
          T  +QL   +   +  VSA+AG+GKT++L++R+  R++  +     +L +T TKAAA+EM
Sbjct: 2  TDPQQLAIQERNTNVLVSASAGAGKTYLLIERLAQRIVQDHISLDQILAVTFTKAAASEM 61

Query: 79 SHRV 82
            R+
Sbjct: 62 KTRL 65


>gi|224372542|ref|YP_002606914.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH]
 gi|223589142|gb|ACM92878.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH]
          Length = 665

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 27/49 (55%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  +  R+  LL     PS  L LT T  AA+EM  R L +I
Sbjct: 26 AGAGSGKTKTITTRLAYLLSLGIDPSNTLTLTFTNKAASEMRERALRMI 74


>gi|72080737|ref|YP_287795.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448]
          Length = 748

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AG+GKT +L +++  ++  + A+PS +L LT T  AA EM +RV +++        
Sbjct: 22  IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153
                                          E    +++ T H+ C  I++   LEA NI
Sbjct: 75  -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 100

Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203
                       F I DE+  KK++E+     L +   D+ +E K  AF  I  ISN ++
Sbjct: 101 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKAN--DDRDETKISAFDAIKFISNAKN 158

Query: 204 IETLISDII 212
            E    D++
Sbjct: 159 WEKSPEDLL 167


>gi|123446867|ref|XP_001312180.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
 gi|121894018|gb|EAX99250.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
          Length = 727

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 41/141 (29%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           ++ A AGSGKT  L+ R+  ++    +P  +L +T T+ AA E+  R+   I        
Sbjct: 26  FIYAGAGSGKTRTLICRIAYMIDQGVNPENILAMTFTRKAADEIRERLKTFIG------- 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P  S ++ +                 T H  C  I++Q P     +
Sbjct: 79  --------------PKASSVTTS-----------------TFHQLCLNILKQNPFILGFS 107

Query: 155 SH---FAIADEEQSKKLIEEA 172
            +   F IAD  + +K+I+ A
Sbjct: 108 GNDQTFHIADNTEQRKIIKNA 128


>gi|83719885|ref|YP_441989.1| superfamily I DNA/RNA helicase [Burkholderia thailandensis E264]
 gi|83653710|gb|ABC37773.1| Superfamily I DNA and RNA helicases [Burkholderia thailandensis
          E264]
          Length = 920

 Score = 43.9 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 6/51 (11%)

Query: 38 ANAGSGKTHILVQRVLRLLL------ANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT ++ QRV+RLL       A  HP  ++  T T  AAAE+  R+
Sbjct: 25 ACAGSGKTEVVAQRVVRLLQPISVGGAGCHPENIVAFTFTDKAAAELKERI 75


>gi|330832698|ref|YP_004401523.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3]
 gi|329306921|gb|AEB81337.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3]
          Length = 1217

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 33/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  VSA+AGSGKT ++VQR+L  L        L   T T  AA E+  R+        +
Sbjct: 41  QNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELKERI------EKN 94

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L++ I  AE            DM   RHL   + +      + T+ +F + ++  +    
Sbjct: 95  LNETI--AETM----------DMDLRRHLSAQLADLTKA-DIGTMDSFTQKLVTTYGYSL 141

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
            I+  F I        L +E +K++L   + D      + F + LE   +     L+ + 
Sbjct: 142 GISPQFRI--------LQDETEKASLKKEVFD------QLFADYLEQDENGAFRKLVRNF 187

Query: 212 ISNR 215
             NR
Sbjct: 188 SGNR 191


>gi|319789815|ref|YP_004151448.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
 gi|317114317|gb|ADU96807.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
          Length = 958

 Score = 43.9 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 21/189 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + ANAG+GKT  +V R +  +        ++  T T+AAAA++  RV             
Sbjct: 5   IGANAGAGKTTEIVSRYVEFIRQKFSVDEVVLTTFTEAAAAQLRDRV------------- 51

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               ++  I+      +D     HL   +L  P    + TIH+FC  ++++F +   + S
Sbjct: 52  ----KLALIEEISSCVNDEGTKEHLETQLLYLPTA-PIGTIHSFCFELLRRFGVSKGLIS 106

Query: 156 HFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDIETLISDII 212
             A +A   +  +L E A +S +  +   ++E  +K    I    +     +E  + ++I
Sbjct: 107 LEARLASPIEVAELAERAVESAVEEVYSADSEGFRKLLTAIDPNGLEGLLTVERFLKEVI 166

Query: 213 SNRTALKLI 221
            +RT    +
Sbjct: 167 HHRTRFPFV 175


>gi|251778648|ref|ZP_04821568.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082963|gb|EES48853.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 749

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 39/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  ++      P  +L +T T  AA EM  RV+ +I          
Sbjct: 26  AGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFTNKAAKEMKDRVISLIG--------- 76

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                             SKA ++ I+           T H+ C  I+++   +   TS+
Sbjct: 77  ------------------SKAENMWIS-----------TFHSTCVRILRREIDKIGYTSN 107

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D    K LI+E  K
Sbjct: 108 FTIYDTSDQKVLIKECMK 125


>gi|84501254|ref|ZP_00999459.1| helicase IV [Oceanicola batsensis HTCC2597]
 gi|84390545|gb|EAQ03033.1| helicase IV [Oceanicola batsensis HTCC2597]
          Length = 894

 Score = 43.9 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 26/197 (13%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTL 65
           +++  +T++ +  T  ++L       +  V A AGSGKT ++  +   L+ A    PS L
Sbjct: 114 WKDFFDTVESMPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRKPSEL 173

Query: 66  LCLTHTKAAAAEMSHRV-----LEIITAWSH-LSDEILSAEITKIQGKKP--------NK 111
           L L   K AA EMS R+     + +     H L+ EI    I +++G+KP        +K
Sbjct: 174 LLLAFAKDAATEMSERIEARCGVPVAARTFHALAYEI----IGEVEGEKPPLAPTATDDK 229

Query: 112 SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           + +S  + +L  I+ T   +  QT+  +       FP E +  +      + +S+ L   
Sbjct: 230 AFLSLMKEILRHIVATASEI-AQTVTGWFAGFFDDFPTEWDFNTKHEWYAQIESRNL--- 285

Query: 172 AKKSTLASIMLDNNEEL 188
               TL    +++ EEL
Sbjct: 286 ---RTLQGETVNSFEEL 299


>gi|229113198|ref|ZP_04242693.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
 gi|228670224|gb|EEL25572.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
          Length = 719

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +AN   S +L LT T+ AA EM  R+
Sbjct: 101 AAAGSGKTRVLASRVGYLMCVANVDASRILVLTFTRKAANEMKQRI 146


>gi|324323717|gb|ADY24761.1| helicase, UvrD/Rep family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 719

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +AN   S +L LT T+ AA EM  R+
Sbjct: 101 AAAGSGKTRVLASRVGYLMCVANVDASRILVLTFTRKAANEMKQRI 146


>gi|319782887|ref|YP_004142363.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168775|gb|ADV12313.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 861

 Score = 43.9 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 10  HSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           H+   D +     EQ LA + T     V A AG+GKT +L  R+  +L    A PS +L 
Sbjct: 35  HNNAPDYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAYILDTKRAWPSEILA 94

Query: 68  LTHTKAAAAEMSHRV 82
           +T T  AA EM  R+
Sbjct: 95  VTFTNKAAREMKQRI 109


>gi|315634341|ref|ZP_07889628.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC
           33393]
 gi|315476931|gb|EFU67676.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC
           33393]
          Length = 1220

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 15/143 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEII- 86
           + A+AG+GKT+ +    LRLLL    N  P  L     L +T T+ A  E+  ++ E I 
Sbjct: 17  IEASAGTGKTYTMGSLYLRLLLQAGENTFPYALNVEQILVVTFTEMATEELKRKIRERIY 76

Query: 87  ------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                 TA+    D  +  +   ++    + +D+  A   L    +      + TIH FC
Sbjct: 77  DAKQKLTAYQQTQDSAVFGQDDFLRELVASITDLPLAIQRLTLAEQNMDLAAIYTIHGFC 136

Query: 141 EAIMQQFPLEANITSHFAIADEE 163
             ++ Q+   + +  +  ++ EE
Sbjct: 137 RRMLMQYAFNSGVHFNLELSGEE 159


>gi|296272340|ref|YP_003654971.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096514|gb|ADG92464.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 680

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 22 SEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
          +E+ LA+   +  +  + A+AG+GKT  +V R+  L+     PS ++ LT T  AA EM 
Sbjct: 7  NEEQLAAATCKPGFNLIIASAGTGKTSTIVGRIATLINGGVKPSEIILLTFTNKAAQEMV 66

Query: 80 HRV 82
           RV
Sbjct: 67 QRV 69


>gi|257459551|ref|ZP_05624660.1| acyl carrier protein [Campylobacter gracilis RM3268]
 gi|257442976|gb|EEV18110.1| acyl carrier protein [Campylobacter gracilis RM3268]
          Length = 684

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +D +++  +EQ  A+  P     V A+AG+GKT  +V R+  LL     P  +L LT T 
Sbjct: 10 LDALAKLNTEQYAAATAPAGHNLVIASAGTGKTSTIVARIAHLLNLGTSPRKILLLTFTN 69

Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSA 99
           AA+EM  R+        H   +I SA
Sbjct: 70 KAASEMIARL------QRHFDKKITSA 90


>gi|89898806|ref|YP_515916.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta
           [Chlamydophila felis Fe/C-56]
 gi|89332178|dbj|BAE81771.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta
           [Chlamydophila felis Fe/C-56]
          Length = 1045

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLE-IITAWSH 91
           ++ A+AG+GKT  + Q +LR LL  +   T  +L +T T AA  E+  R+ + +  A S 
Sbjct: 18  FLEASAGTGKTFTIEQIILRALLEGSVTRTENILAVTFTNAATNELKLRIQDNLKRALSQ 77

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFP 148
           L    LS     +    P   D+ +    +   L T   + + TIH FC  ++Q  FP
Sbjct: 78  LKSS-LSDPSQPLPPYLPEPCDVKQLYMQIRNALATIDRMAIFTIHGFCNHVLQLHFP 134


>gi|76799128|ref|ZP_00781314.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
 gi|76585514|gb|EAO62086.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
          Length = 770

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 19/144 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+  R+ + I      ++ 
Sbjct: 45  VSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKI------NES 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           + SAE   +             +  L   L       + T+ AF + I+ Q+     I+ 
Sbjct: 99  LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145

Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179
            F I  ++  + +I+    + L S
Sbjct: 146 IFRILQDKNEQDVIKNEVYADLFS 169


>gi|223932475|ref|ZP_03624477.1| recombination helicase AddA [Streptococcus suis 89/1591]
 gi|302023673|ref|ZP_07248884.1| ATP-dependent exonuclease subunit A [Streptococcus suis 05HAS68]
 gi|223898929|gb|EEF65288.1| recombination helicase AddA [Streptococcus suis 89/1591]
          Length = 1217

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 33/184 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  VSA+AGSGKT ++VQR+L  L        L   T T  AA E+  R+        +
Sbjct: 41  QNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELKERI------EKN 94

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L++ I  AE            DM   RHL   + +      + T+ +F + ++  +    
Sbjct: 95  LNETI--AETM----------DMDLRRHLSAQLADLTKA-DIGTMDSFTQKLVTTYGYSL 141

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
            I+  F I        L +E +K++L   + D      + F + LE   +     L+ + 
Sbjct: 142 GISPQFRI--------LQDETEKASLKKEVFD------QLFADYLEQDENGAFRKLVRNF 187

Query: 212 ISNR 215
             NR
Sbjct: 188 SGNR 191


>gi|325524957|gb|EGD02885.1| UvrD/REP helicase [Burkholderia sp. TJI49]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|298372853|ref|ZP_06982843.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274
          str. F0058]
 gi|298275757|gb|EFI17308.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274
          str. F0058]
          Length = 776

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  ++  L+      S++L LT T  AA EM  R+++I+
Sbjct: 32 IVAGAGSGKTRVLTYKIAYLIAQGFPASSILALTFTNKAANEMKERIMQIV 82


>gi|219685122|ref|ZP_03539942.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04]
 gi|219673218|gb|EED30237.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79


>gi|212637392|ref|YP_002313917.1| DNA-dependent helicase II [Shewanella piezotolerans WP3]
 gi|212558876|gb|ACJ31330.1| DNA helicase II [Shewanella piezotolerans WP3]
          Length = 721

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P  +L +T
Sbjct: 4   SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV                    K+ G      +MS+             
Sbjct: 62  FTNKAAKEMRERV-------------------EKVAG-----GNMSR------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            + + T H     +++    EAN+   F I D +   +LI    K  L S+ LD  +
Sbjct: 85  -MWIGTFHGLAHRLLRTHYKEANLPQSFQILDSDDQLRLI----KRILKSLNLDEKQ 136


>gi|206558483|ref|YP_002229243.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315]
 gi|198034520|emb|CAR50385.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQLGTT 138


>gi|219684438|ref|ZP_03539382.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr]
 gi|219672427|gb|EED29480.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79


>gi|150009169|ref|YP_001303912.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503]
 gi|149937593|gb|ABR44290.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503]
          Length = 1055

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIIT--AWSHL 92
           A+AG+GKTH L    L LL   + P     +L +T T  A  EM  R+++ +   A    
Sbjct: 7   ASAGAGKTHKLTGEYLMLLF--SQPGVYRRILAVTFTNKATDEMKTRIVQELYHLASGRA 64

Query: 93  SD--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           SD  ++LS+  +  +     +    +AR +L+ IL       + TI  F +  M+ F  E
Sbjct: 65  SDYIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTRE 119

Query: 151 ANITSHFAI 159
             +   + I
Sbjct: 120 IGLQGGYGI 128


>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
 gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
          Length = 855

 Score = 43.9 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 44/138 (31%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           ++AG+GKT  L  R+  ++  N A    +LCLT T  A  EM  +++E +          
Sbjct: 25  SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153
                    GK+                     GLK  V+T H+FC + I ++     +I
Sbjct: 75  ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104

Query: 154 TSHFAIADEEQSKKLIEE 171
           +S F I DEE +K++I E
Sbjct: 105 SSDFTIYDEEDTKEIISE 122


>gi|160900763|ref|YP_001566345.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
 gi|160366347|gb|ABX37960.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
          Length = 822

 Score = 43.9 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++    EQL A + P   A + A AGSGKT +L  R+  LL    A P ++L +T T  
Sbjct: 21 LLANLNEEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSILAVTFTNK 80

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 81 AAKEMLARL 89


>gi|325962273|ref|YP_004240179.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468360|gb|ADX72045.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 830

 Score = 43.9 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+    AH   +L +T T  AAAEM  R+            
Sbjct: 80  IVAGAGSGKTRVLSNRIAYLIATGRAHHGEILAITFTNKAAAEMRERI------------ 127

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E L     KI                          + + T H+ C  I++Q      + 
Sbjct: 128 EALVGGRAKI--------------------------MWISTFHSSCVRILRQEAANVGLK 161

Query: 155 SHFAIADEEQSKKLIEEAKK 174
           S+F+I D   S +L+ +  K
Sbjct: 162 SNFSIYDSADSLRLVTQVSK 181


>gi|312127653|ref|YP_003992527.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777672|gb|ADQ07158.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108]
          Length = 714

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  +L +  A+P  +L +T T  AA EM  R+  +++  S
Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFTNKAADEMKERIKRLVSTQS 79


>gi|134294278|ref|YP_001118013.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
 gi|134137435|gb|ABO53178.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|222055070|ref|YP_002537432.1| UvrD/REP helicase [Geobacter sp. FRC-32]
 gi|221564359|gb|ACM20331.1| UvrD/REP helicase [Geobacter sp. FRC-32]
          Length = 678

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 12/98 (12%)

Query: 23  EQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80
           +QL A   T  A  V A AGSGKT ++  R+  LLL     P+ +L +T T  AA EM  
Sbjct: 10  QQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLLLDKKVPPANILAVTFTNKAAKEMRE 69

Query: 81  RVLE----------IITAWSHLSDEILSAEITKIQGKK 108
           RV            II+ +  L   IL  +I ++  KK
Sbjct: 70  RVDGLVGRAACKGLIISTFHSLGVRILRRDIERLGYKK 107


>gi|289207283|ref|YP_003459349.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288942914|gb|ADC70613.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 735

 Score = 43.9 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P +   V A AGSGKT +LV R+  L+ +    P +LL +T
Sbjct: 4  SPLLDSLNPAQREAVAA--PPQPLLVLAGAGSGKTRVLVHRIAWLIGVEGVAPHSLLAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM  R+
Sbjct: 62 FTNKAAAEMRGRI 74


>gi|172059215|ref|YP_001806867.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
 gi|171991732|gb|ACB62651.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|111115437|ref|YP_710055.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
          afzelii PKo]
 gi|216263384|ref|ZP_03435379.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1]
 gi|110890711|gb|ABH01879.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
          afzelii PKo]
 gi|215980228|gb|EEC21049.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79


>gi|107024447|ref|YP_622774.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054]
 gi|116688174|ref|YP_833797.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424]
 gi|105894636|gb|ABF77801.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054]
 gi|116646263|gb|ABK06904.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQLGTT 138


>gi|195941740|ref|ZP_03087122.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Borrelia burgdorferi 80a]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|170731518|ref|YP_001763465.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
 gi|169814760|gb|ACA89343.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQLGTT 138


>gi|220911705|ref|YP_002487014.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6]
 gi|219858583|gb|ACL38925.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6]
          Length = 837

 Score = 43.9 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+    AH   +L +T T  AAAEM  R+            
Sbjct: 87  IVAGAGSGKTRVLSNRIAYLIATGRAHHGEILAITFTNKAAAEMRERI------------ 134

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E L     KI                          + + T H+ C  I++Q      + 
Sbjct: 135 EALVGGRAKI--------------------------MWISTFHSSCVRILRQEAANVGLK 168

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S+F+I D   S +L+ +  K+
Sbjct: 169 SNFSIYDAADSLRLVTQVSKA 189


>gi|167587403|ref|ZP_02379791.1| UvrD/REP helicase [Burkholderia ubonensis Bu]
          Length = 539

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3  DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|194337239|ref|YP_002019033.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309716|gb|ACF44416.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 739

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT ++  R+  L+      P  +L LT T  AA EM HRV
Sbjct: 20 TGPVMVLAGAGSGKTRVITYRIAYLIRNEGVSPQNILALTFTNKAAGEMRHRV 72


>gi|307824211|ref|ZP_07654437.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
 gi|307734591|gb|EFO05442.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
          Length = 725

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 7/77 (9%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV---LRLLLANAHPSTLLCLTH 70
          ID ++  + + + A  P+++  V A AGSGKT +LV R+   +++L  +AH  ++L +T 
Sbjct: 7  IDPLNDAQRQAVTA--PSQAMLVLAGAGSGKTRVLVHRIAWQIQVLGVSAH--SILAVTF 62

Query: 71 TKAAAAEMSHRVLEIIT 87
          T  AA EM  R+ E++ 
Sbjct: 63 TNKAAKEMRGRIEELLN 79


>gi|301163214|emb|CBW22764.1| putative helicase [Bacteroides fragilis 638R]
          Length = 1057

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D  
Sbjct: 9   ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67

Query: 97  LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I  +  +  D   + A   L  +L      +V+TI +F ++IM+    E  ++
Sbjct: 68  SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSIMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|224531919|ref|ZP_03672551.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116]
 gi|224511384|gb|EEF81790.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 29 AGAGSGKTRVVTHRIAHLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79


>gi|313681842|ref|YP_004059580.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313154702|gb|ADR33380.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 692

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A+ P     + A+AG+GKT  +V R+  L+  N  P  +L LT T  AA EM  RV
Sbjct: 14 ATAPYGHNLIIASAGTGKTSTIVGRIAYLISQNVKPEEILLLTFTNKAAQEMVERV 69


>gi|253568133|ref|ZP_04845544.1| ATP-dependent helicase [Bacteroides sp. 1_1_6]
 gi|251842206|gb|EES70286.1| ATP-dependent helicase [Bacteroides sp. 1_1_6]
          Length = 1057

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLVLNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I  + K+  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETKRTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|111220613|ref|YP_711407.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111148145|emb|CAJ59814.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 847

 Score = 43.9 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  R+  LL A    P  +L +T T  AAAEM  RV
Sbjct: 74  VVAGAGSGKTRVLAHRIAYLLAARGVRPGEILAITFTNKAAAEMRERV 121


>gi|15806776|ref|NP_295498.1| DNA helicase II [Deinococcus radiodurans R1]
 gi|6459549|gb|AAF11329.1|AE002019_2 DNA helicase II [Deinococcus radiodurans R1]
          Length = 745

 Score = 43.9 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          DL+      Q  A+D  T  A V A AGSGKT  L+ R+  L+     HP  +L +T T 
Sbjct: 8  DLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTN 67

Query: 73 AAAAEMSHRVLEII 86
           AAAEM  R   ++
Sbjct: 68 KAAAEMRERAGHLV 81


>gi|237741609|ref|ZP_04572090.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13]
 gi|229429257|gb|EEO39469.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13]
          Length = 735

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 39/145 (26%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV ++
Sbjct: 15  ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERVEDL 74

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +                          D++KA               + T H+F   +++
Sbjct: 75  V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 96

Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170
            +  E    S+F I D +  K++++
Sbjct: 97  MYAKEVGYNSNFTIYDTDDQKRIVK 121


>gi|221218096|ref|ZP_03589562.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a]
 gi|221192044|gb|EEE18265.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|196047871|ref|ZP_03115049.1| UvrD/REP helicase [Bacillus cereus 03BB108]
 gi|196021127|gb|EDX59856.1| UvrD/REP helicase [Bacillus cereus 03BB108]
          Length = 273

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  ++     HP  ++ LT TK AA EM  R+
Sbjct: 80  AGAGSGKTSVLTSRVAYMMTEKQIHPGNIMLLTFTKKAAEEMKERI 125


>gi|149181197|ref|ZP_01859696.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           SG-1]
 gi|148851096|gb|EDL65247.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           SG-1]
          Length = 743

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 2   IYHNSFQEHSETIDLISQTKSE---------QLLASDPTRSAWVS-ANAGSGKTHILVQR 51
           +YHN   +H E+ D     + E         Q+ A        ++ A AGSGKT +LV R
Sbjct: 21  VYHNENHQHYESEDRFYFQRLEEKGICLNEAQMKAVRHMEGPCLTLAGAGSGKTSVLVSR 80

Query: 52  VLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
              LL + +  P  +L LT +K AA EM  RV
Sbjct: 81  TGYLLQVKHVPPENILLLTFSKKAAMEMKQRV 112


>gi|42525604|ref|NP_970702.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405]
 gi|41815615|gb|AAS10583.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola
           ATCC 35405]
          Length = 1139

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 29/138 (21%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +++ ++A AGSGKT +L  R +  ++        ++ LT T+ AAAEM  R+   +    
Sbjct: 24  KNSVIAAGAGSGKTKVLAARYVYFVVEKGVSVEKIIALTFTEKAAAEMHKRIYNELKKID 83

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           H                 PN  +  +  HL           K+ TI +FC  I +     
Sbjct: 84  H-----------------PNAKNAIEKFHL----------AKISTIDSFCNRIARDACRN 116

Query: 151 ANITSHFAIADEEQSKKL 168
             I+  F I D  +S+KL
Sbjct: 117 LGISPDFNI-DNTESEKL 133


>gi|224534767|ref|ZP_03675339.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S]
 gi|224514015|gb|EEF84337.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79


>gi|164687610|ref|ZP_02211638.1| hypothetical protein CLOBAR_01251 [Clostridium bartlettii DSM
          16795]
 gi|164603384|gb|EDQ96849.1| hypothetical protein CLOBAR_01251 [Clostridium bartlettii DSM
          16795]
          Length = 683

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHT 71
           ID +++ + E +   D      V A  GSGKT ++  R++ +++    P T +L ++ T
Sbjct: 6  NIDKLNENQQEAVKHVDG--PCMVLAGPGSGKTRVITYRIVNMVMNEGIPPTRILAISFT 63

Query: 72 KAAAAEMSHRVLEIITAW 89
          KA++ EM +R L I   +
Sbjct: 64 KASSIEMKNRALSICNDF 81


>gi|312149185|gb|ADQ29256.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi N40]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|302392793|ref|YP_003828613.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
 gi|302204870|gb|ADL13548.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
          Length = 707

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII-------- 86
           V A AGSGKT +L  R+  L+   N  P  LL +T T  AA EM  R+ ++I        
Sbjct: 24  VLAGAGSGKTMVLTHRIAYLIQQCNVEPYNLLAVTFTNKAAEEMRERIEKLIAQDSEDIW 83

Query: 87  -TAWSHLSDEILSAEITKI 104
            + +  ++  IL  EI K+
Sbjct: 84  MSTFHSIAVRILRREINKL 102


>gi|170698717|ref|ZP_02889782.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
 gi|171321304|ref|ZP_02910265.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
 gi|170136342|gb|EDT04605.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
 gi|171093411|gb|EDT38595.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|225549593|ref|ZP_03770559.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a]
 gi|225369870|gb|EEG99317.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|224533580|ref|ZP_03674169.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a]
 gi|224513253|gb|EEF83615.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|224532709|ref|ZP_03673326.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23]
 gi|224512327|gb|EEF82711.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|225548716|ref|ZP_03769763.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a]
 gi|225370746|gb|EEH00182.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|187479029|ref|YP_787053.1| DNA helicase [Bordetella avium 197N]
 gi|115423615|emb|CAJ50155.1| DNA helicase [Bordetella avium 197N]
          Length = 685

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  RV +L+   A P  +L LT ++ AA EM  R   ++
Sbjct: 37 VIAGAGSGKTSVLAHRVAQLIRHGADPQRVLLLTFSRRAAQEMDRRAGGVL 87


>gi|15594952|ref|NP_212741.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Borrelia burgdorferi B31]
 gi|223889056|ref|ZP_03623646.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b]
 gi|2688535|gb|AAC66967.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Borrelia burgdorferi B31]
 gi|223885482|gb|EEF56582.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|170718056|ref|YP_001785094.1| DNA-dependent helicase II [Haemophilus somnus 2336]
 gi|168826185|gb|ACA31556.1| DNA helicase II [Haemophilus somnus 2336]
          Length = 726

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLT 69
          SE ++ +++ +   ++A  P  +  V A AGSGKT +L  R+  L      P S+++ +T
Sbjct: 4  SELLNDLNEKQRNAVVA--PLGNYLVLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMAVT 61

Query: 70 HTKAAAAEMSHRVLEIITAWSH 91
           T  AA EM HR+   +  +SH
Sbjct: 62 FTNKAATEMRHRIEATLARYSH 83


>gi|312148323|gb|ADQ30982.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi JD1]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|218249903|ref|YP_002375114.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7]
 gi|226321913|ref|ZP_03797439.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26]
 gi|218165091|gb|ACK75152.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7]
 gi|226233102|gb|EEH31855.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|308051416|ref|YP_003914982.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799]
 gi|307633606|gb|ADN77908.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799]
          Length = 721

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  LL      P  +L +T T  AAAEM HR+ +++
Sbjct: 27 VLAGAGSGKTRVLTHRIAWLLEEQGESPYAILAVTFTNKAAAEMRHRIEDLV 78


>gi|282859649|ref|ZP_06268751.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010]
 gi|282587567|gb|EFB92770.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010]
          Length = 839

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI---------- 85
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+ +I          
Sbjct: 23  VVAGAGSGKTRVLTYKIAYLLEKGLKPWNILALTFTNKAAREMKERIAKITHSHDTNRLY 82

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129
           +  +  +   IL AE   I G   N +  D S +R LL  I++  G
Sbjct: 83  MGTFHSIFARILRAEAHHI-GYNSNFTIYDESDSRSLLKNIIKAMG 127


>gi|260462130|ref|ZP_05810374.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
 gi|259031990|gb|EEW33257.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
          Length = 899

 Score = 43.9 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           D +     EQ LA + T     V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 40  DYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGKAFPSQILAVTFTN 99

Query: 73  AAAAEMSHRV 82
            AA EM  R+
Sbjct: 100 KAAREMKQRI 109


>gi|126662607|ref|ZP_01733606.1| ATP-dependent helicase [Flavobacteria bacterium BAL38]
 gi|126625986|gb|EAZ96675.1| ATP-dependent helicase [Flavobacteria bacterium BAL38]
          Length = 1062

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 12/144 (8%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            A+AGSGKT+ L +  L++L   ++      +L +T T  A  EM  R++  +  +S  S
Sbjct: 10  DASAGSGKTYTLTKEYLKILFLASNDDAYRKILAITFTNKAVEEMKSRIVSSLYEFSIDS 69

Query: 94  DEILSAEITKIQGKKPNKS-----DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
               + E+ K    +   S     D SKA  ++  I+       + TI  F   +++ F 
Sbjct: 70  TSDKAMELLKDVSAETKLSIATLKDKSKA--IIKNIIHNYAAFDISTIDKFTHKVIRTFA 127

Query: 149 LEANITSHFAIADEEQSKKLIEEA 172
            + N+  +F ++ E  S  L++EA
Sbjct: 128 QDLNLPPNFEVSLETDS--LLQEA 149


>gi|78064806|ref|YP_367575.1| UvrD/REP helicase [Burkholderia sp. 383]
 gi|77965551|gb|ABB06931.1| UvrD/REP helicase [Burkholderia sp. 383]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|299066163|emb|CBJ37346.1| DNA helicase II [Ralstonia solanacearum CMR15]
          Length = 794

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          +L++    EQ  A + P  SA + A AGSGKT +L  R+  L+  A   PS +L +T T 
Sbjct: 3  ELLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM+ R+
Sbjct: 63 KAAKEMNARL 72


>gi|156975569|ref|YP_001446476.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Vibrio harveyi
           ATCC BAA-1116]
 gi|156527163|gb|ABU72249.1| hypothetical protein VIBHAR_03301 [Vibrio harveyi ATCC BAA-1116]
          Length = 1212

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +   +T          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGTANTKHRVPLTVDQILVVTFTEAATAELRDRIRAR 82

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A    SD ++   + +I+       D  +A  +L+          V TIH F
Sbjct: 83  IHDARIAFARGKSSDPVIQPLLGEIE-------DHKQAAEILLQAERQMDEAAVYTIHGF 135

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 136 CQRMLTQNAFESG 148


>gi|254250937|ref|ZP_04944255.1| UvrD/REP helicase [Burkholderia dolosa AUO158]
 gi|124893546|gb|EAY67426.1| UvrD/REP helicase [Burkholderia dolosa AUO158]
          Length = 714

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 41  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 89

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 90  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 135

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 136 PQFSIMDSDDCFGMIQEQLGTT 157


>gi|115350193|ref|YP_772032.1| UvrD/REP helicase [Burkholderia ambifaria AMMD]
 gi|115280181|gb|ABI85698.1| UvrD/REP helicase [Burkholderia ambifaria AMMD]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|296268638|ref|YP_003651270.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833]
 gi|296091425|gb|ADG87377.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833]
          Length = 786

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + A AGSGKT +L  R+  LL     HP+ +L +T T  AA EM  RV  ++   S L
Sbjct: 66  IVAGAGSGKTRVLTHRIAYLLAERRVHPAEILAITFTNKAAREMRDRVDRLVGPRSQL 123


>gi|326203370|ref|ZP_08193235.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM
          2782]
 gi|325986628|gb|EGD47459.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM
          2782]
          Length = 783

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          A AGSGKT +L  R+  L+  +  +PS +L +T T  AA EM  R+  +I   S+
Sbjct: 26 AGAGSGKTRVLTHRIAYLIEQHGVYPSNILAITFTNKAAREMKERIAGLIGDLSN 80


>gi|227537987|ref|ZP_03968036.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum
          ATCC 33300]
 gi|227242063|gb|EEI92078.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum
          ATCC 33300]
          Length = 758

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT ++  RV  L+     P  +L LT T  AA EM  R+++++
Sbjct: 24 IVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTNKAAKEMRERIMKVV 74


>gi|189913135|ref|YP_001965023.1| Exodeoxyribonuclease V, beta subunit [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|189913470|ref|YP_001964698.1| Exodeoxyribonuclease V beta chain, UvrD subfamily [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167777811|gb|ABZ96110.1| Exodeoxyribonuclease V, beta subunit [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781538|gb|ABZ99834.1| Exodeoxyribonuclease V beta chain, UvrD subfamily [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1209

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 58/191 (30%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPST-------LLCLTHTKAAAAEMSHRV-LEII 86
           ++ A+AG+GKTH+++Q +  ++  +    T        L LT T+ AA E+  R+ L+I+
Sbjct: 13  FIEASAGTGKTHLIMQMLGDVMTHDVTNHTKENRLLQFLVLTFTEKAAGELKARLKLKIL 72

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
             + +              GK P      +  H L  + +    + + TIH FC  ++ +
Sbjct: 73  ELYEN--------------GKHP------EYYHYLRDLDQ----VTISTIHGFCNMVLTE 108

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL-KKAFYEILEIS-NDEDI 204
           +P+E                            ++ L +NEEL +K FY++        D 
Sbjct: 109 YPVETQNN-----------------------PNVKLTSNEELIRKTFYDLKRSQWEGRDK 145

Query: 205 ETLISDI-ISN 214
           E+L +DI ISN
Sbjct: 146 ESLANDILISN 156


>gi|167756539|ref|ZP_02428666.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402]
 gi|237733137|ref|ZP_04563618.1| ATP-dependent DNA helicase [Mollicutes bacterium D7]
 gi|167702714|gb|EDS17293.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402]
 gi|229383819|gb|EEO33910.1| ATP-dependent DNA helicase [Coprobacillus sp. D7]
          Length = 714

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 39/135 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  R+  L+      P  +L +T T  AA EM  R+  ++          
Sbjct: 26  AGAGSGKTRVVTYRIAYLIDEIGVDPRKILAITFTNKAANEMKERITSLL---------- 75

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                 H L        G  V TIH+ C  I+++     N  S+
Sbjct: 76  --------------------GPHAL--------GSLVCTIHSLCVRILRRHINVINYPSN 107

Query: 157 FAIADEEQSKKLIEE 171
           F I DEE  K LI++
Sbjct: 108 FMIMDEEDQKALIKK 122


>gi|167587899|ref|ZP_02380287.1| UvrD/REP helicase [Burkholderia ubonensis Bu]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|152998439|ref|YP_001343274.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
 gi|150839363|gb|ABR73339.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
          Length = 737

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 41/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D ++  + E + A  P +++ V A AGSGKT +LV R+  L+ A    P +L+ +T T 
Sbjct: 7   LDSLNDKQREAVAA--PLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++                                         P G+ 
Sbjct: 65  KAAREMQGRIEQLVGV--------------------------------------PPQGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H     +++    +A +  +F I D +   +LI+
Sbjct: 87  VGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQLRLIK 124


>gi|51473636|ref|YP_067393.1| DNA helicase II [Rickettsia typhi str. Wilmington]
 gi|81390099|sp|Q68WT1|UVRD_RICTY RecName: Full=DNA helicase II
 gi|51459948|gb|AAU03911.1| DNA helicase II [Rickettsia typhi str. Wilmington]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EMS RV  +I  + 
Sbjct: 33 AGAGTGKTKVLTSRIANIIQQNLALPHNILAVTFTNKAAKEMSERVHNLINCYG 86


>gi|294673714|ref|YP_003574330.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23]
 gi|294472187|gb|ADE81576.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23]
          Length = 809

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 14  IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID++ +    Q +A +    A  V A AGSGKT +L  ++  LL     P  +L LT T 
Sbjct: 3   IDILRELNDSQRVAVEYCDGASLVIAGAGSGKTRVLTYKIAWLLEQGMKPWQILALTFTN 62

Query: 73  AAAAEMSHRVLEII----------TAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHL 120
            AA EM  R+  ++            +  +   IL  E  KI G   N +  D + AR L
Sbjct: 63  KAAREMKDRIGRLVGEEQARYLQMGTFHSVFARILRVEADKI-GYNANFTIYDQTDARSL 121

Query: 121 LITILETPG 129
           + TI++  G
Sbjct: 122 VKTIIKEMG 130


>gi|189351901|ref|YP_001947529.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
 gi|189335923|dbj|BAG44993.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138


>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
          Length = 855

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 44/138 (31%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           ++AG+GKT  L  R+  ++  N A    +LCLT T  A  EM  +++E +          
Sbjct: 25  SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153
                    GK+                     GLK  V+T H+FC + I ++     +I
Sbjct: 75  ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104

Query: 154 TSHFAIADEEQSKKLIEE 171
           +S F I DEE +K++I E
Sbjct: 105 SSDFTIYDEEDTKEIISE 122


>gi|229496489|ref|ZP_04390203.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316386|gb|EEN82305.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 536

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 12/130 (9%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST----LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +A+AG+GKT+ L    L L L   +P      +L +T T  A  EM  R++E++     L
Sbjct: 8   TASAGAGKTYTLALEYLTLAL--KYPEDKFRHILAMTFTNKATNEMKSRIVEVLY---QL 62

Query: 93  SDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           + E   + +    G++ + S      +A+  L +IL      +V TI +F + +++ F  
Sbjct: 63  TTEREPSPLALALGERLDLSPEQITDRAQRTLRSILGDYSSFRVSTIDSFFQEVVRSFAF 122

Query: 150 EANITSHFAI 159
           E N   ++ +
Sbjct: 123 ELNFAGNYKV 132


>gi|161523326|ref|YP_001578338.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|160340755|gb|ABX13841.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
          Length = 721

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 48  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 96

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 97  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 142

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 143 PQFSIMDSDDCFGMIQEQIGTT 164


>gi|254246736|ref|ZP_04940057.1| UvrD/REP helicase [Burkholderia cenocepacia PC184]
 gi|124871512|gb|EAY63228.1| UvrD/REP helicase [Burkholderia cenocepacia PC184]
          Length = 775

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 102 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 150

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 151 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 196

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 197 PQFSIMDSDDCFGMIQEQLGTT 218


>gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1]
 gi|119958641|gb|ABM15646.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1]
          Length = 775

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 40/136 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL A +     +L +T T  AAAEM  RV+ ++        
Sbjct: 37  IVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNKAAAEMRERVVSLVG------- 89

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                +AR++ ++           T H+ C  I++ Q  L   +
Sbjct: 90  --------------------PRARNMWVS-----------TFHSTCVRILRNQASLLPGL 118

Query: 154 TSHFAIADEEQSKKLI 169
            S+F+I D + S++L+
Sbjct: 119 NSNFSIYDADDSRRLL 134


>gi|313204216|ref|YP_004042873.1| uvrd/rep helicase [Paludibacter propionicigenes WB4]
 gi|312443532|gb|ADQ79888.1| UvrD/REP helicase [Paludibacter propionicigenes WB4]
          Length = 1086

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           A+AGSGKT+ L Q  + LL       T   +L +T T  A  EM  R+L+ + A S    
Sbjct: 7   ASAGSGKTYRLTQDYIHLLFDARRERTHRRILAVTFTNKATDEMKTRILKELLALSQGEK 66

Query: 95  EILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
               A +  I    P    + +KA+ +L  IL       + TI  F + +++ F  +  +
Sbjct: 67  SDYRAGL--ISKDYPTDEGVNAKAKKILTGILHDYSSFSISTIDRFFQQVIRSFARDIGV 124

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
              + +  E  +   +E++  +    +  D N++L
Sbjct: 125 HGGYNL--ELDNTATLEQSVDNLFLDLSKDENKQL 157


>gi|299535245|ref|ZP_07048569.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1]
 gi|298729366|gb|EFI69917.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1]
          Length = 750

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 13 TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
          T +L++    EQ  A   T     + A AGSGKT +L  R+  L++    +PS +L +T 
Sbjct: 5  TKNLLAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVIEKEVYPSKILAITF 64

Query: 71 TKAAAAEMSHRVLEII 86
          T  AA EM  R+  I+
Sbjct: 65 TNKAAREMRDRIDGIL 80


>gi|300772620|ref|ZP_07082490.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum
          ATCC 33861]
 gi|300760923|gb|EFK57749.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum
          ATCC 33861]
          Length = 758

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT ++  RV  L+     P  +L LT T  AA EM  R+++++
Sbjct: 24 IVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTNKAAKEMRERIMKVV 74


>gi|90415401|ref|ZP_01223335.1| DNA helicase II [marine gamma proteobacterium HTCC2207]
 gi|90332724|gb|EAS47894.1| DNA helicase II [marine gamma proteobacterium HTCC2207]
          Length = 723

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +LV R+  +L + N  P ++L +T T  AA EM  R+ E++
Sbjct: 27 VLAGAGSGKTRVLVHRIAWKLQVDNLSPYSILAVTFTNKAAREMRERIDELM 78


>gi|159903624|ref|YP_001550968.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9211]
 gi|159888800|gb|ABX09014.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9211]
          Length = 1265

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAE----MSHRVLEIITAWS 90
           + A+AG+GKT  L   VLRLL    H  + +L ++ T+A+AAE    +++R++  +    
Sbjct: 21  IEASAGTGKTFSLAHLVLRLLTEKQHSINEILVVSFTRASAAEIKARITNRLIFALKGLE 80

Query: 91  HLSDEILSAEITKIQGKKPNK--SDMSKARHLLITILETPGGL---KVQTIHAFCEAIMQ 145
           + S E  +  I ++  +   K  +D+ +  H +  +L+    +    + TIH FC   +Q
Sbjct: 81  NPSKEYKNKHIDQVLDEWLKKFINDIQRRMHWVNHLLDALTNIDQADITTIHGFCRRTLQ 140

Query: 146 QFPLEANITSHFAIADEEQSKKLIEE 171
           +  +E+          E + KKL+ E
Sbjct: 141 RDVIESGSAIEPHPIAEGEIKKLVNE 166


>gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4]
 gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4]
          Length = 830

 Score = 43.9 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 40/141 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL      P  +L +T T  AAAEM  RV  ++        
Sbjct: 52  IVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFTNKAAAEMRERVAALV-------- 103

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                      G + N                    + V T H+ C  I++ Q  L   +
Sbjct: 104 -----------GPRAN-------------------AMWVSTFHSSCVRILRAQAALLPGL 133

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
            S+F+I D + S++L+    K
Sbjct: 134 NSNFSIYDSDDSRRLLTMISK 154


>gi|317011121|gb|ADU84868.1| ATP-dependent DNA helicase [Helicobacter pylori SouthAfrica7]
          Length = 672

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    + A+AG+GKT  +V R+L LL     P  +L LT T  A++E
Sbjct: 6  QLNPEQLKAASALKGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASSE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|145347097|ref|XP_001418014.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578242|gb|ABO96307.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 657

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          P  +  V A  GSGKTH+L+ RV  L+      P  +LC+T T  AA E+  R+ + I
Sbjct: 12 PVGATRVLAGPGSGKTHVLIGRVAHLIHELKTPPREILCITFTNKAARELRERLRDKI 69


>gi|154244726|ref|YP_001415684.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154158811|gb|ABS66027.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1143

 Score = 43.9 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           + A  G+GKT  LV+RVL LL     P+ +L LT +  AA E+S R++
Sbjct: 218 LQAGPGTGKTRTLVKRVLSLLADGIDPAAILVLTFSNRAAGELSERLI 265


>gi|332176248|gb|AEE25501.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1108

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 27/144 (18%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           S  V A AGSGKT   V+  L  LL   +P + L +T T  A +E   RV+  +      
Sbjct: 16  SKLVKAPAGSGKTTESVKYFLNSLLDCKYPESTLFMTFTNQATSEFRERVISYLRI---- 71

Query: 93  SDEILSAEITKIQGKKPNKS----DM--------SKARHLLITILETPGGLKVQTIHAFC 140
                       Q   P KS    DM         + + L   +L  P  L+++TI A C
Sbjct: 72  -----------AQSNTPPKSAHEMDMYSLAKKVLQRDKELGWGLLSNPNRLEIKTIDALC 120

Query: 141 EAIMQQFPLEANITSHFAIADEEQ 164
             I+   PL + + +   +++  Q
Sbjct: 121 ANIVASSPLGSEMGAVGKVSERPQ 144


>gi|225552476|ref|ZP_03773416.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1]
 gi|225371474|gb|EEH00904.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|113460642|ref|YP_718708.1| DNA-dependent helicase II [Haemophilus somnus 129PT]
 gi|112822685|gb|ABI24774.1| ATP-dependent DNA helicase UvrD [Haemophilus somnus 129PT]
          Length = 726

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLT 69
          SE ++ +++ +   ++A  P  +  V A AGSGKT +L  R+  L      P S+++ +T
Sbjct: 4  SELLNDLNEKQRNAVVA--PLGNYLVLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMAVT 61

Query: 70 HTKAAAAEMSHRVLEIITAWSH 91
           T  AA EM HR+   +  +SH
Sbjct: 62 FTNKAAMEMRHRIEATLARYSH 83


>gi|319899138|ref|YP_004159231.1| DNA helicase II [Bartonella clarridgeiae 73]
 gi|319403102|emb|CBI76660.1| DNA helicase II [Bartonella clarridgeiae 73]
          Length = 817

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L L  AHP  +L +T T  +A EM  R+ E+I
Sbjct: 64  VLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKSAHEMKMRIGELI 115


>gi|302871914|ref|YP_003840550.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574773|gb|ADL42564.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
          Length = 714

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  +L +  A+P  +L +T T  AA EM  R+  ++   S
Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFTNKAADEMKERIKRLVNTQS 79


>gi|218130936|ref|ZP_03459740.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697]
 gi|217987280|gb|EEC53611.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697]
          Length = 1087

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L ++   W    D 
Sbjct: 8   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKE--DP 65

Query: 96  ILSAEITKIQ---GKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              A + +I+      P  +K    +A   L  +L      +V+TI +F +++M+    E
Sbjct: 66  ASDAYLKRIKEDLASSPLSDKELRRRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLARE 125

Query: 151 ANITSHFAI 159
             ++ +  I
Sbjct: 126 LELSPNLNI 134


>gi|51598860|ref|YP_073048.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
          garinii PBi]
 gi|51573431|gb|AAU07456.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
          garinii PBi]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+
Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKIL 77


>gi|68249734|ref|YP_248846.1| DNA-dependent helicase II [Haemophilus influenzae 86-028NP]
 gi|68057933|gb|AAX88186.1| DNA helicase II [Haemophilus influenzae 86-028NP]
          Length = 727

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + + + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 5  SELLDGLNDKQRKAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 63 FTNKAAAEMRHRI 75


>gi|330990129|ref|ZP_08314109.1| DNA helicase II [Gluconacetobacter sp. SXCC-1]
 gi|329762817|gb|EGG79281.1| DNA helicase II [Gluconacetobacter sp. SXCC-1]
          Length = 668

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 39/152 (25%)

Query: 36  VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT  LV  V+ R+   N  PS +L +T T  AA EM  R+ + + A      
Sbjct: 29  VLAGAGTGKTRTLVAGVVDRIGRRNIAPSRILAVTFTNRAAEEMRSRIADAVGA------ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            PG   + T HA     ++  P  A + 
Sbjct: 83  ------------------------------DRAPG--WIGTFHAHGRRQLRTDPDIALLR 110

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             F IAD E S++++    ++ +A   LD  +
Sbjct: 111 DGFGIADAEDSRRIVRRLLQAAMADGALDAQD 142


>gi|303231497|ref|ZP_07318227.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302513840|gb|EFL55852.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 729

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL    +P  +L +T T  AA EM  RV
Sbjct: 27 AGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTNKAAKEMKSRV 71


>gi|289705452|ref|ZP_06501846.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
 gi|289557837|gb|EFD51134.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
          Length = 963

 Score = 43.9 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL    A P  +L +T T  AAAEM  RV  +I
Sbjct: 83  IVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNKAAAEMRERVAGLI 134


>gi|289705920|ref|ZP_06502298.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
 gi|289557366|gb|EFD50679.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
          Length = 962

 Score = 43.9 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL    A P  +L +T T  AAAEM  RV  +I
Sbjct: 83  IVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNKAAAEMRERVAGLI 134


>gi|224539625|ref|ZP_03680164.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518716|gb|EEF87821.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 916

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-WSHLSDE 95
           A+AGSGKT  L    ++ L+ N      +L +T T  A AEM  R+L+ +   W  LSD 
Sbjct: 8   ASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIW--LSDP 65

Query: 96  ILSAEITKI----QGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                + +I    + K  + SD+ +A    L  +L      +V+TI +F +++M+    E
Sbjct: 66  ASEPYLNRIREDLRQKNLSDSDIRRAAGTALQYMLHDYSRFRVETIDSFFQSVMRNLARE 125

Query: 151 ANITSHFAI 159
             ++ +  I
Sbjct: 126 LELSPNLNI 134


>gi|170017499|ref|YP_001728418.1| ATP-dependent exoDNAse beta subunit [Leuconostoc citreum KM20]
 gi|251764532|sp|B1MZM2|ADDA_LEUCK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
          Full=ATP-dependent helicase/nuclease AddA
 gi|169804356|gb|ACA82974.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
          helicase and exonuclease domains) [Leuconostoc citreum
          KM20]
          Length = 1236

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V+A+AGSGKT +L++R+++ +L+       L +T T AAA EM  R LEI
Sbjct: 22 VAASAGSGKTTVLIERLIQKILSGISVENFLIVTFTNAAAKEMRER-LEI 70


>gi|327398224|ref|YP_004339093.1| UvrD/REP helicase [Hippea maritima DSM 10411]
 gi|327180853|gb|AEA33034.1| UvrD/REP helicase [Hippea maritima DSM 10411]
          Length = 1025

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 35/148 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLL--------------LANAHPST---------LLCLTHTK 72
           + A+AGSGKT+ L +R L +L                  +  T         ++ +T T 
Sbjct: 14  IEASAGSGKTYRLAERFLLMLTEYLKSKATLKSLKFCGGNQETCQTPTSIDSIIAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAAEM  RV+  +   + + SD +    +           D   +  LL+ I+E     
Sbjct: 74  KAAAEMKERVISFLKCLAGIKSDNVPDVGL-----------DKDSSFKLLVEIVEKFSDF 122

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAI 159
            + TI +F   I++ F  + NI   + I
Sbjct: 123 HITTIDSFMNRILKAFAADLNIHPDYEI 150


>gi|221214244|ref|ZP_03587216.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1]
 gi|221165899|gb|EED98373.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1]
          Length = 745

 Score = 43.9 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 72  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 120

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 121 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 166

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 167 PQFSIMDSDDCFGMIQEQIGTT 188


>gi|162455882|ref|YP_001618249.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161166464|emb|CAN97769.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 685

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++  R+ RLL       ++L +T T  AAAEM  RV +++ +
Sbjct: 3  VLAGAGSGKTRVVTTRIARLLDRGIPARSMLAMTFTNKAAAEMHERVGKLVGS 55


>gi|304312501|ref|YP_003812099.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains
           helicaseand exonuclease domains) [gamma proteobacterium
           HdN1]
 gi|301798234|emb|CBL46456.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains
           helicaseand exonuclease domains) [gamma proteobacterium
           HdN1]
          Length = 1272

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 24/167 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-------PSTLLCLTHTKAAAAEMSHRVLEIITA 88
           + A+AG+GKT  +    LRL+L +         P  +L +T T+AAA E+  R+   +  
Sbjct: 26  IEASAGTGKTFTIAALYLRLILGHQSTLGRPLTPRDILVVTFTQAAAEELRGRIRARLYE 85

Query: 89  WSHL-------SDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            +         S+ IL A  +  + QG +       +A +LL    E      + TIHA+
Sbjct: 86  GAQAMRGVELPSESILCALYQEYEAQGMR------ERAGYLLQQAAENMDEAAIYTIHAW 139

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           C+ ++QQ    +  +  F    ++  K L+E   +    S      E
Sbjct: 140 CQQVLQQHAFASGAS--FGKTLQQDEKVLLEVCVRDYWRSFFYSQGE 184


>gi|260887265|ref|ZP_05898528.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC
          35185]
 gi|260863327|gb|EEX77827.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC
          35185]
          Length = 766

 Score = 43.9 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  LL     P ++L +T T  AAAEM  RV  +I
Sbjct: 35 IMAGAGSGKTKVLTCRIANLLAHGVPPYSILAITFTNKAAAEMRERVDRMI 85


>gi|260220810|emb|CBA28747.1| DNA helicase II [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 872

 Score = 43.9 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 5   NSFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-- 61
           +SF     T  L+     EQL A + P   A + A AGSGKT +L  R+   LL N +  
Sbjct: 59  HSFAAAGSTPPLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRI-AWLLQNGYVS 117

Query: 62  PSTLLCLTHTKAAAAEMSHRV 82
           P  +L +T T  AA EM  R+
Sbjct: 118 PGGILAVTFTNKAAKEMMTRL 138


>gi|157156759|ref|YP_001464364.1| UvrD family helicase [Escherichia coli E24377A]
 gi|157078789|gb|ABV18497.1| helicase, UvrD family [Escherichia coli E24377A]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A+AGSGKT +L +RV R +L N     ++ LT T  AA EMS R+
Sbjct: 21 VLASAGSGKTRVLTERV-RYILNNTKRDAVIALTFTNKAAEEMSSRL 66


>gi|15674822|ref|NP_268996.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes M1 GAS]
 gi|13621954|gb|AAK33717.1| putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes M1 GAS]
          Length = 1210

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 46  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 99

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 100 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 146

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L +  ++  E
Sbjct: 147 QFRIMQDKAEQDVLKQEVFSKLFNEFMNQKE 177


>gi|121999202|ref|YP_001003989.1| UvrD/REP helicase [Halorhodospira halophila SL1]
 gi|121590607|gb|ABM63187.1| ATP-dependent DNA helicase UvrD [Halorhodospira halophila SL1]
          Length = 725

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          P   A V A AGSGKT +L +R   L+ +  A P  +L +T T  AA EM  R+ E++
Sbjct: 21 PPGRALVLAGAGSGKTRVLTRRAAYLVQVEGASPFAILAVTFTNKAAGEMRGRIGELL 78


>gi|325959294|ref|YP_004290760.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
 gi|325330726|gb|ADZ09788.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
          Length = 786

 Score = 43.5 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 1  MIYHNSFQEH-----SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL 55
          MI  N F++      +  I LI      + +++   +S ++ A  GSGKT ++V ++L+ 
Sbjct: 1  MINLNMFEQLVVKNLNRDIRLIVNPDQNKAISAPTDQSQFIVAGPGSGKTTVMVLKILKF 60

Query: 56 L-LANAHPSTLLCLTHTKAAAAEMSHRVL 83
          + + + +P  +L  T T+ AAAE+  R+L
Sbjct: 61 IYVDDVNPGNILATTFTRKAAAELRSRIL 89


>gi|283769206|ref|ZP_06342110.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219]
 gi|283104182|gb|EFC05561.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219]
          Length = 710

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+      PS +L +T T  AA EM  RVL ++        
Sbjct: 24  VIAGAGSGKTRVLTMRIAYLMEEKKVWPSKILAITFTNKAAREMETRVLSLM-------- 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                           K ++SK                V TIH+ C  I++Q        
Sbjct: 76  ----------------KEEVSKP--------------TVCTIHSLCVRILRQEIEAMGYP 105

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D E  K +++E  K
Sbjct: 106 KSFTILDVEDQKAILKEYYK 125


>gi|313893297|ref|ZP_07826872.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158
          str. F0412]
 gi|313442193|gb|EFR60610.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158
          str. F0412]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL    +P  +L +T T  AA EM  RV
Sbjct: 27 AGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAAKEMKSRV 71


>gi|254483191|ref|ZP_05096424.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
          HTCC2148]
 gi|214036562|gb|EEB77236.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
          HTCC2148]
          Length = 717

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          V A AGSGKT +LV R+  L+ A    P ++L +T T  AA EM +R+ E++   SH
Sbjct: 27 VLAGAGSGKTRVLVHRIAWLIRAEEFSPWSILAVTFTNKAAKEMRNRIEEMLQIPSH 83


>gi|330838978|ref|YP_004413558.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC
          35185]
 gi|329746742|gb|AEC00099.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC
          35185]
          Length = 755

 Score = 43.5 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  LL     P ++L +T T  AAAEM  RV  +I
Sbjct: 24 IMAGAGSGKTKVLTCRIANLLAHGVPPYSILAITFTNKAAAEMRERVDRMI 74


>gi|53804812|ref|YP_113512.1| DNA-dependent helicase II [Methylococcus capsulatus str. Bath]
 gi|53758573|gb|AAU92864.1| DNA helicase II [Methylococcus capsulatus str. Bath]
          Length = 726

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          P RS  V A AGSGKT +L+ R+  LL A    P  +L +T T  AA EM  R+
Sbjct: 21 PDRSLLVLAGAGSGKTRVLIHRIAWLLRAEGVSPHAILAVTFTNKAANEMKARL 74


>gi|13471509|ref|NP_103075.1| DNA helicase II [Mesorhizobium loti MAFF303099]
 gi|14022251|dbj|BAB48861.1| DNA helicase II [Mesorhizobium loti MAFF303099]
          Length = 817

 Score = 43.5 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          D +     EQ LA + T     V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 12 DYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGKAFPSQILAVTFTN 71

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 72 KAAREMKQRI 81


>gi|303326806|ref|ZP_07357248.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
 gi|302862794|gb|EFL85726.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
          Length = 1081

 Score = 43.5 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 62/155 (40%), Gaps = 34/155 (21%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--------------------TLLCLTH 70
           +R   V A+AGSGKT+ L +  L  L+   H S                     +L +T 
Sbjct: 2   SRLCQVKASAGSGKTYELTRCFLLRLMECGHASGVAASPACALAPEGRQCGWGDILAVTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  RV+       HL    L A    I        D  +AR  +  I+     
Sbjct: 62  TNAAAAEMRDRVIR------HLKSAALGARAEDI------PLDADEARRWVDVIMRDLSA 109

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF--AIADEE 163
           L ++TI +    I++   LE N+   F    A EE
Sbjct: 110 LNIRTIDSLLHLIVRAAALELNLHPDFQPVFATEE 144


>gi|303228942|ref|ZP_07315752.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
          ACS-134-V-Col7a]
 gi|302516356|gb|EFL58288.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
          ACS-134-V-Col7a]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL    +P  +L +T T  AA EM  RV
Sbjct: 27 AGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTNKAAKEMKSRV 71


>gi|209521655|ref|ZP_03270348.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160]
 gi|209497914|gb|EDZ98076.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160]
          Length = 1239

 Score = 43.5 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   L  +     
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87

Query: 92  LSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           + D+     I ++        N  +   A  ++   L T     + TIHAFC+  +Q+ P
Sbjct: 88  MDDDGGDPFIRRLFETTLAPQNGIEREAALKVVRRALRTFDQAAIHTIHAFCQRALQEAP 147

Query: 149 LEANITSHFAIADEEQSKKL 168
             A +   F +  ++ S + 
Sbjct: 148 FAAAMPFVFEMEADDASLRF 167


>gi|229542654|ref|ZP_04431714.1| UvrD/REP helicase [Bacillus coagulans 36D1]
 gi|229327074|gb|EEN92749.1| UvrD/REP helicase [Bacillus coagulans 36D1]
          Length = 232

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L +RV  L++    +P  +L +T T  AA EM  R+  I+  
Sbjct: 31 AGAGSGKTRVLTRRVAYLMVEKGVNPYNILAITFTNKAAREMKDRIAGIMGG 82


>gi|329770497|ref|ZP_08261875.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325]
 gi|328836246|gb|EGF85915.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325]
          Length = 728

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
          ++L+      QL A   T  A  V A AGSGKT +L  R+  L+   N   S +L +T T
Sbjct: 1  MNLVQNMNENQLKAILKTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNVLESNILAITFT 60

Query: 72 KAAAAEMSHRVLEIITAWS 90
            AA EM  R+  ++   S
Sbjct: 61 NKAAKEMKERIYSLVGETS 79


>gi|319939427|ref|ZP_08013787.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus
           1_2_62CV]
 gi|319811413|gb|EFW07708.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus
           1_2_62CV]
          Length = 1226

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSD 94
           VSA+AGSGKT ++VQR++  +L       L   T T  AA+E+  R+  E+  A     D
Sbjct: 45  VSASAGSGKTFVMVQRIIDQILRGVRIDQLFISTFTVKAASELKERLEKELSKALKATGD 104

Query: 95  EILSAEITKIQGKKPN 110
           E L   + +     PN
Sbjct: 105 EELKQHLAQQLADIPN 120


>gi|269798061|ref|YP_003311961.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008]
 gi|282850288|ref|ZP_06259667.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745]
 gi|269094690|gb|ACZ24681.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008]
 gi|282579781|gb|EFB85185.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL    +P  +L +T T  AA EM  RV
Sbjct: 27 AGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAAKEMKSRV 71


>gi|160893045|ref|ZP_02073833.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50]
 gi|156865128|gb|EDO58559.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50]
          Length = 781

 Score = 43.5 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 45/169 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT ++  RV  L+     +P  +L +T T  AAAEM  RV  I+        
Sbjct: 21  ILAGAGSGKTRVITHRVAYLMDEIGVNPYNILAITFTNKAAAEMRDRVNNIVG------- 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E    + V T H+ C  I+++F       
Sbjct: 74  -------------------------------EGAERVWVSTFHSLCVRILRRFSDRLGYA 102

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++F I D +  K     A K+ L  + +D  +  +K F  + EISN ++
Sbjct: 103 TNFNIYDSDDQK----SAVKNILKELKIDPKKYPEKMF--MAEISNAKE 145


>gi|33239787|ref|NP_874729.1| superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237313|gb|AAP99381.1| Superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 807

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 22/146 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+      PS +L +T T  AA EM  R LEI         
Sbjct: 28  VVAGAGSGKTRALTHRIAHLISEYKVEPSEILAVTFTNKAAREMKDR-LEI--------- 77

Query: 95  EILSAEITKIQGKKPNKS-DMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +L+ ++ KI+  +P  +  +S    L   I  E    + + T HA    ++ +F +E  
Sbjct: 78  -LLAQKLAKIEFGQPFSTLKISIQSELRTRIYREVIKEIWIGTFHALFARLL-RFDIEKY 135

Query: 153 I-------TSHFAIADEEQSKKLIEE 171
           +       T HF+I DE+ +  LI+E
Sbjct: 136 VDKEGLKWTRHFSIYDEKDALSLIKE 161


>gi|17549495|ref|NP_522835.1| ATP-dependent DNA helicase II protein [Ralstonia solanacearum
           GMI1000]
 gi|17431748|emb|CAD18427.1| probable atp-dependent dna helicase II protein [Ralstonia
           solanacearum GMI1000]
          Length = 710

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 31/170 (18%)

Query: 9   EHSETIDLISQTKSEQLLA-------SDPTRSA--WVSANAGSGKTHILVQRVLRLLLAN 59
           E +   D ++Q   +Q LA       +D  ++    V A AGSGKTH L  RV  L+   
Sbjct: 9   ETAPAPDYLAQLNDQQRLAVEFGISGADAAQTGPLLVLAGAGSGKTHTLGWRVAHLVANG 68

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  +L LT ++ AA+E+S R   ++                 +QG    +S    A  
Sbjct: 69  ADPQRILLLTFSRRAASELSSRAGHLLA--------------RALQGSAGARSAAGTAYR 114

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
              T L   G     T H     +++++     +   F I D   +  L+
Sbjct: 115 ---TALPWAG-----TFHGIGARLLREYAERIGLAPDFTIHDRSDAADLL 156


>gi|53690303|ref|ZP_00346176.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium
          longum DJO10A]
          Length = 454

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87


>gi|332109888|gb|EGJ10516.1| ATP-dependent DNA helicase UvrD [Rubrivivax benzoatilyticus JA2]
          Length = 784

 Score = 43.5 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 10 HSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
          H +   L+     EQL A + P   A + A AGSGKT +L  R+  LL  N   P  +L 
Sbjct: 2  HLQDAQLLRNLNPEQLAAVTLPAVPALILAGAGSGKTRVLTTRIAWLLATNQVSPGGVLA 61

Query: 68 LTHTKAAAAEMSHRV 82
          +T T  AA EM  R+
Sbjct: 62 VTFTNKAAKEMLTRL 76


>gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
 gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
          Length = 896

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 41/150 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++         
Sbjct: 27  VLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVVGG------- 79

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                            D S+              L V  +H FC   + +   +  I +
Sbjct: 80  -----------------DFSE--------------LMVGNVHRFCSKFLFE---QGRIPA 105

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
             AI D+E++  +I + +      +  D N
Sbjct: 106 DSAIIDDEEAVSIIADYRNEDEEGVTRDFN 135


>gi|251764601|sp|Q9A0H3|ADDA_STRP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
          Length = 1222

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L +  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFNEFMNQKE 189


>gi|325696015|gb|EGD37906.1| exonuclease RexA [Streptococcus sanguinis SK160]
          Length = 1224

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 37/182 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R+         L   
Sbjct: 45  VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL------EKELGQA 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +  AE  +++            +HL   + + P    + T+ AF + ++ ++     +  
Sbjct: 99  LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
           +F I              +S    ++L N     + F ++ +   D + + L S ++ N 
Sbjct: 146 NFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSRLVKNF 187

Query: 216 TA 217
           T 
Sbjct: 188 TG 189


>gi|303240584|ref|ZP_07327099.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2]
 gi|302591821|gb|EFL61554.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2]
          Length = 739

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L+     +PS++L +T T  AA EM  R+ +++
Sbjct: 26 AGAGSGKTRVLTNRIAYLIKEKGVYPSSILAITFTNKAAKEMRERIDKLV 75


>gi|294793798|ref|ZP_06758935.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44]
 gi|294455368|gb|EFG23740.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL    +P  +L +T T  AA EM  RV
Sbjct: 27 AGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAAKEMKSRV 71


>gi|237785085|ref|YP_002905790.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757997|gb|ACR17247.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 870

 Score = 43.5 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 29/191 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII-------- 86
           V A AGSGKT +L +R+  L+ +    P  ++ +T T  AA EM  RV ++I        
Sbjct: 41  VVAGAGSGKTAVLTRRIAYLIGVRGVAPWNIVAITFTNKAATEMKERVADLIGPIAERMW 100

Query: 87  -TAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG-GLKVQTIHAFCEA 142
            + +  +   IL A+   I G   N +  D   +R LL  I       LK         A
Sbjct: 101 VSTFHSMCVRILRAQANLIPGLNTNFTIYDSDDSRRLLTMIARDMNLDLKRFASRTVASA 160

Query: 143 IMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           I     L+  + T   A+AD E+ K    E    T+A I  +  + L+         SN 
Sbjct: 161 ISN---LKNELRTPDEALADAEEDKNPFNE----TVAQIFAEYQKRLRA--------SNA 205

Query: 202 EDIETLISDII 212
            D + LI +++
Sbjct: 206 VDFDDLIGEVV 216


>gi|94990159|ref|YP_598259.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270]
 gi|251764561|sp|Q1JHM1|ADDA_STRPD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|94543667|gb|ABF33715.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270]
          Length = 1222

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L +  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFNEFMNQKE 189


>gi|54310566|ref|YP_131586.1| DNA-dependent helicase II [Photobacterium profundum SS9]
 gi|46915009|emb|CAG21784.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           SS9]
          Length = 724

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 41/157 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A   +++ +T T 
Sbjct: 7   LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLMQIEQASSYSVMSVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+ E++                                        +  G+ 
Sbjct: 65  KAAAEMRGRINELMEG--------------------------------------SSAGMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H  C  +++   L+A +   F I D +   +L+
Sbjct: 87  NGTFHGLCHRMLRAHYLDARLPDDFNILDSDDQMRLL 123


>gi|238019225|ref|ZP_04599651.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC
          17748]
 gi|237863924|gb|EEP65214.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC
          17748]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL    +P  +L +T T  AA EM  RV
Sbjct: 27 AGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAAKEMKSRV 71


>gi|71910408|ref|YP_281958.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005]
 gi|71853190|gb|AAZ51213.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005]
          Length = 1222

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+       + L  +
Sbjct: 58  VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I  A+ T  Q K             L   L++     + T+ AF + ++ ++     I+S
Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            F I  ++  + ++++   S L +  ++  E
Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFNEFMNQKE 189


>gi|170726988|ref|YP_001761014.1| exodeoxyribonuclease V subunit beta [Shewanella woodyi ATCC 51908]
 gi|169812335|gb|ACA86919.1| exodeoxyribonuclease V, beta subunit [Shewanella woodyi ATCC 51908]
          Length = 1229

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT  +    +RLLL +  P+ L C     +T T AA  E+  R+   I 
Sbjct: 25  SRLIEASAGTGKTFTIAGLYVRLLLGHEIPTPLTCEQILVVTFTNAATGELRDRIRRKIQ 84

Query: 88  -AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A+          E+ +   +   +S+   A   L   L++     + TIH FC+ I+  
Sbjct: 85  LAYRCFIGLDTGDELIESLYRLTPESERPLALKRLDLALKSLDEASIFTIHGFCQRILAD 144

Query: 147 FPLEANI--TSHFAIADEE 163
              E+++   S F + D E
Sbjct: 145 MAFESSLLFESEFTLDDSE 163


>gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 896

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 41/150 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++         
Sbjct: 27  VLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVVGG------- 79

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                            D S+              L V  +H FC   + +   +  I +
Sbjct: 80  -----------------DFSE--------------LMVGNVHRFCSKFLFE---QGRIPA 105

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
             AI D+E++  +I + +      +  D N
Sbjct: 106 DSAIIDDEEAVSIIADYRNEDEEGVTRDFN 135


>gi|225621491|ref|YP_002722750.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1]
 gi|225216312|gb|ACN85046.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1]
          Length = 1131

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 15/148 (10%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            +V+A+AG+GKT  + +  L+LL      S ++ +T TKAAA EM  R+    +   +  
Sbjct: 22  CFVNASAGTGKTSTITEIYLKLLENKEKVSNIVVITFTKAAANEMLFRIR---SKVRNKI 78

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           DEI +    K   +K    D+ K       IL +    K+ TI+AF  +I  +  +  +I
Sbjct: 79  DEIKNTNDEKSIKEKKYWQDVYK------DILTSA---KISTINAFANSIAMENAMYLSI 129

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIM 181
             + +I ++      I+E  KS + +I+
Sbjct: 130 PPNMSILEDSID---IQETLKSEILNIL 154


>gi|85711578|ref|ZP_01042636.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145]
 gi|85694730|gb|EAQ32670.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145]
          Length = 724

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKA 73
          LIS    +Q  A S   R   V A AGSGKT +LV R+  L+    + P ++L +T T  
Sbjct: 6  LISGLNEKQATAVSADDRPMLVLAGAGSGKTRVLVHRIAWLIQERRYSPYSILAVTFTNK 65

Query: 74 AAAEMSHRVLEIITA 88
          AA+EM  RV +++ +
Sbjct: 66 AASEMRGRVEQLLGS 80


>gi|113970112|ref|YP_733905.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-4]
 gi|113884796|gb|ABI38848.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-4]
          Length = 1274

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 15/158 (9%)

Query: 20  TKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LT 69
           TK    L  DP       S  + A+AG+GKT+ +    LRLLL +    +L C     +T
Sbjct: 2   TKVSPALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSESLNCEQILVVT 61

Query: 70  HTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            T AA  E+  R+   I       L  EI    +  +  K P        R   +  L++
Sbjct: 62  FTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLA-LKS 120

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEE 163
                + TIH FC+ I+     E+++   S F + D E
Sbjct: 121 LDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSE 158


>gi|240949012|ref|ZP_04753366.1| exodeoxyribonuclease V beta chain [Actinobacillus minor NM305]
 gi|240296599|gb|EER47217.1| exodeoxyribonuclease V beta chain [Actinobacillus minor NM305]
          Length = 1202

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRVL 83
           S+ + A+AG+GKTH +    LRLLL   H  +         +L +T TKAA  E+  R+ 
Sbjct: 14  SSLIEASAGTGKTHTIKNLYLRLLLGLGHDKSAFQPLTVAQILVVTFTKAATEELRERIR 73

Query: 84  EIITAWSHLSDEILSAEITKIQG--KKPNKSDMSKARHLL-ITILETPGGL-KVQTIHAF 139
           E I A      E LS E TK     ++  +   +K   LL + I E    L  V TIH+F
Sbjct: 74  ENIQACYTFFQERLSGEETKSDDFFEQLFEQVENKEEALLRLRIAEREIDLASVFTIHSF 133

Query: 140 CEAIMQQFPLEANI 153
           C+ ++ QF  ++ +
Sbjct: 134 CQKMLFQFAFDSGV 147


>gi|329118654|ref|ZP_08247358.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465389|gb|EGF11670.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 805

 Score = 43.5 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 7   FQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           F   S +  L+     EQL A   P +SA V A AGSGKT +L  R+  LL ++ A   +
Sbjct: 74  FSTESPSSALLQGLNPEQLAAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSSQASVHS 133

Query: 65  LLCLTHTKAAAAEMSHRVLEII 86
           ++ +T T  AA EM  R+  +I
Sbjct: 134 IMAVTFTNKAAKEMQTRLGAMI 155


>gi|325105548|ref|YP_004275202.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
 gi|324974396|gb|ADY53380.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
          Length = 1072

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AGSGKT  L    L LL +N +    +L +T T  A  EM  R+LE++ + +  + 
Sbjct: 8   LQASAGSGKTFSLAVHYLTLLFSNESKYREILAVTFTNKATEEMKSRILEVLKSLAENNG 67

Query: 95  E---------ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +         IL A     + K   K+D    R     IL       V TI  F + +++
Sbjct: 68  DTGIESYRKLILEAYPAFTREKLSEKADKIYRR-----ILHDYSRFSVNTIDGFVQKVIR 122

Query: 146 QFPLEANITSHFAI 159
            F  E  + + +++
Sbjct: 123 GFAFELGLDASYSL 136


>gi|237751187|ref|ZP_04581667.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229372553|gb|EEO22944.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 711

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 34/139 (24%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT  L  R+  LL         L LT T  AA EM  R L++I + S       
Sbjct: 26  AGAGSGKTKTLTTRLAYLLSIGIPAQNTLTLTFTNKAAREMRERALKLIESMS------- 78

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                                   I ++ TP    + T H F    +Q++    +  S F
Sbjct: 79  ------------------------IPMINTP---LLCTFHKFGLLFLQRYIHLLSRNSMF 111

Query: 158 AIADEEQSKKLIEEAKKST 176
            + DE+  +K+I   KK++
Sbjct: 112 NVIDEDDKRKIIRNIKKNS 130


>gi|223934306|ref|ZP_03626227.1| UvrD/REP helicase [bacterium Ellin514]
 gi|223896769|gb|EEF63209.1| UvrD/REP helicase [bacterium Ellin514]
          Length = 689

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 31/147 (21%)

Query: 17  ISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S    +Q +A++  R    + A AG+GKT ++  R+  ++     P ++L +T T  AA
Sbjct: 4   LSTLNPQQRMAAETIRGPVLILAGAGTGKTRVITFRIAHMIERGVAPGSILAVTFTNKAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV ++I                     +P+K    K+R       E P    + T
Sbjct: 64  REMQERVNKLIP--------------------RPSK----KSRD------EKPERPTLCT 93

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADE 162
            H+ C  I++Q   +     +F I D+
Sbjct: 94  FHSLCVRILRQHIEKLGYKKNFVIYDQ 120


>gi|162148662|ref|YP_001603123.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787239|emb|CAP56832.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
          Length = 699

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT+ L  RV  L+     P  +L LT ++ A+ EM+ RV  I  A
Sbjct: 44 VIAGAGSGKTNTLAHRVAHLIATGTDPRRILLLTFSRRASTEMTRRVERICRA 96


>gi|300857964|ref|YP_003782947.1| hypothetical protein cpfrc_00546 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300685418|gb|ADK28340.1| hypothetical protein cpfrc_00546 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302205693|gb|ADL10035.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis
          C231]
 gi|302330245|gb|ADL20439.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis
          1002]
 gi|308275928|gb|ADO25827.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis I19]
          Length = 683

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          IDL      ++  AS P     + A AG+GKT  +  R+  L+    A P+ +L +T T+
Sbjct: 2  IDLNELDSDQRAAASAPRGPVAILAGAGTGKTRTITYRIANLIDRGMASPNRVLAVTFTR 61

Query: 73 AAAAEMSHRV 82
           AA EM HR+
Sbjct: 62 RAAGEMRHRL 71


>gi|149193951|ref|ZP_01871049.1| HELICASE [Caminibacter mediatlanticus TB-2]
 gi|149135904|gb|EDM24382.1| HELICASE [Caminibacter mediatlanticus TB-2]
          Length = 905

 Score = 43.5 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 9/171 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + LLL  A+P  ++ +T T  +A EM  R++  +       DE
Sbjct: 7   LKASAGSGKTFSLANRYISLLLKGANPKEIVAITFTNKSAREMEERIIRYLRDIK--KDE 64

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               ++ +  G    K  + KA  +L   L++   + + TI +F + I ++F        
Sbjct: 65  NFLKKLVENTGMS-EKEIIKKAPIILDKFLKS--DIHITTIDSFIQKIARKFSYYGGFDI 121

Query: 156 HFAIAD---EEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEILEISNDE 202
            F +     E    K ++         ++    NEE   +F E L + + E
Sbjct: 122 DFDVKSDNLEAVFSKFVDSLNDKEFEELVNFSKNEENILSFLESLYLIDKE 172


>gi|153833972|ref|ZP_01986639.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01]
 gi|148869710|gb|EDL68691.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01]
          Length = 1212

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGTTDTKHRVPLTVDQILVVTFTEAATAELRDRIRAR 82

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A    SD ++   + +I+  K       +A  +L+          V TIH F
Sbjct: 83  IHDARIAFARGQSSDPVIQPLLEEIEAHK-------QAAEILLQAERQMDEAAVYTIHGF 135

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 136 CQRMLTQNAFESG 148


>gi|148270656|ref|YP_001245116.1| UvrD/REP helicase [Thermotoga petrophila RKU-1]
 gi|170289362|ref|YP_001739600.1| UvrD/REP helicase [Thermotoga sp. RQ2]
 gi|281412966|ref|YP_003347045.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10]
 gi|147736200|gb|ABQ47540.1| UvrD/REP helicase [Thermotoga petrophila RKU-1]
 gi|170176865|gb|ACB09917.1| UvrD/REP helicase [Thermotoga sp. RQ2]
 gi|281374069|gb|ADA67631.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10]
          Length = 648

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A  GSGKT ++  ++  LL     PS +L +T T+AAA EM  R
Sbjct: 36 VIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTRAAAREMVER 81


>gi|293390017|ref|ZP_06634351.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950551|gb|EFE00670.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 1234

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEII- 86
           + A+AG+GKT+ +    LRLLL    N  P +L     L +T T+ A  E+  ++ E I 
Sbjct: 30  IEASAGTGKTYTMGSLYLRLLLQAGENVFPHSLNVEQILVVTFTEMATEELKRKIRERIY 89

Query: 87  ------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                 TA+    D  +  +   ++      +D   A   L    +      + TIH FC
Sbjct: 90  AAKQKLTAYQQTQDPAVFEQDEFLRQLADTITDFPLAIQRLTLAEQNMDLAAIYTIHGFC 149

Query: 141 EAIMQQFPLEANITSHFAIADEE 163
             ++ Q+   + I  +  ++ EE
Sbjct: 150 RRMLMQYAFNSGIHFNLELSGEE 172


>gi|160947350|ref|ZP_02094517.1| hypothetical protein PEPMIC_01284 [Parvimonas micra ATCC 33270]
 gi|158446484|gb|EDP23479.1| hypothetical protein PEPMIC_01284 [Parvimonas micra ATCC 33270]
          Length = 615

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 39/137 (28%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           A + A  GSGKT +L+ R+L L+   N  PS ++ +T +K+   +M  R L         
Sbjct: 18  ALILAVPGSGKTTVLLNRILNLIKNHNIDPSEIISITFSKSQGIDMEKRFL--------- 68

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                         + P                E  G +  +TIHAFC  I++ +    N
Sbjct: 69  -------------AQNP----------------EFRGKITFKTIHAFCYEIVRNYMKLKN 99

Query: 153 ITSHFAIADEEQSKKLI 169
           I       + E ++ LI
Sbjct: 100 IKKTLIEGNNEFNRILI 116


>gi|110634338|ref|YP_674546.1| ATP-dependent DNA helicase Rep [Mesorhizobium sp. BNC1]
 gi|110285322|gb|ABG63381.1| ATP-dependent DNA helicase, Rep family [Chelativorans sp. BNC1]
          Length = 876

 Score = 43.5 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           EQ LA + T     V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  
Sbjct: 48  EQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREMKT 107

Query: 81  RV 82
           R+
Sbjct: 108 RI 109


>gi|288921364|ref|ZP_06415644.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288347216|gb|EFC81513.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1138

 Score = 43.5 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 23  EQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
           EQL A+  P   A V A AGSGKT ++  RV+ L+      P  +L LT T  AAAE++ 
Sbjct: 49  EQLAAATAPLEPAVVIAGAGSGKTSVMAARVVWLVATRQVEPGRVLGLTFTNKAAAELAG 108

Query: 81  RV 82
           RV
Sbjct: 109 RV 110


>gi|158312780|ref|YP_001505288.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108185|gb|ABW10382.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1088

 Score = 43.5 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 23 EQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
          EQL A+  P   A V A AGSGKT ++  RV+ L+      P  +L LT T  AAAE++ 
Sbjct: 22 EQLAAATAPLEPAVVIAGAGSGKTSVMAARVVWLVATRQVEPGRVLGLTFTNKAAAELAG 81

Query: 81 RV 82
          RV
Sbjct: 82 RV 83


>gi|260885683|ref|ZP_05735545.2| ATP-dependent helicase [Prevotella tannerae ATCC 51259]
 gi|260851937|gb|EEX71806.1| ATP-dependent helicase [Prevotella tannerae ATCC 51259]
          Length = 1084

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 5/144 (3%)

Query: 38  ANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L Q  L +LL        +L +T T  A  EM  R+L  +   +   D  
Sbjct: 33  ASAGSGKTFTLAQNYLVQLLSKGGSHRYILAVTFTNKATTEMKQRILAYLYDLAEGRDND 92

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
            +  + +  G+  +     +A+  L  IL      +V TI  F + ++     E  ++++
Sbjct: 93  FTRALAERLGQPADLK--QRAQAALDGILHDYDHFQVMTIDKFFQQLLSNLAHELGLSAN 150

Query: 157 FAIADEEQSKKLIEEAKKSTLASI 180
           + I  E   +K ++EA    L +I
Sbjct: 151 YRI--ELDDRKAVDEAVDFLLDAI 172


>gi|257456971|ref|ZP_05622152.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
 gi|257445680|gb|EEV20742.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 39/147 (26%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT ++  R+  +L +    S +L LT T  AA EM  R+ E+            
Sbjct: 25  AGAGSGKTRVITFRIAHMLESGIPQSQILALTFTNKAAREMEQRIKELT----------- 73

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                   GKK                      L + T HA    I++++        +F
Sbjct: 74  --------GKKLQN-------------------LTISTFHALGVKILREYIDRLGWRQNF 106

Query: 158 AIADEEQSKKLIEE-AKKSTLASIMLD 183
           +I DE    +LI+E AK+  +A+  LD
Sbjct: 107 SIYDEVDRNQLIKESAKELKIATETLD 133


>gi|325473361|gb|EGC76556.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402]
          Length = 674

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 38/137 (27%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT ++  R+  +L      S +L LT T  AA EM  R+ E+            
Sbjct: 27  AGAGSGKTRVITFRIAHMLDKGIPQSQILALTFTNKAAKEMQERIKELT----------- 75

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                   GKK                      L V T HAF   +++    +    S+F
Sbjct: 76  --------GKKLQ-------------------NLTVSTFHAFGVKVLRSHIDKIGWRSNF 108

Query: 158 AIADEEQSKKLIEEAKK 174
           +I DE    +LI+E  +
Sbjct: 109 SIYDETDRNQLIKECGR 125


>gi|319405990|emb|CBI79622.1| DNA helicase II [Bartonella sp. AR 15-3]
          Length = 781

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT +L  R+  +L L  AHP  +L +T T  AA EM  R+ E++
Sbjct: 29 VLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEMKIRIGELV 80


>gi|241889348|ref|ZP_04776649.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella
           haemolysans ATCC 10379]
 gi|241863891|gb|EER68272.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella
           haemolysans ATCC 10379]
          Length = 1217

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 20/113 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+A AGSGKT +L +R+ R + +N      LL LT T AAA  M      I+   + +S+
Sbjct: 35  VAAAAGSGKTEVLSERIARKVASNRWDIDRLLVLTFTTAAAKNM------IVRIENKISE 88

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            +LS        K+ +   + K R L+           + TI +FC  ++++F
Sbjct: 89  RLLST------NKEEDLIYLRKQRMLM-------NDAYISTIDSFCLNVLKKF 128


>gi|224023774|ref|ZP_03642140.1| hypothetical protein BACCOPRO_00490 [Bacteroides coprophilus DSM
           18228]
 gi|224016996|gb|EEF75008.1| hypothetical protein BACCOPRO_00490 [Bacteroides coprophilus DSM
           18228]
          Length = 360

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L  + ++LL+ +      +L +T T  A  EM  R+L  +   +  S E 
Sbjct: 65  ASAGSGKTFTLAVQYIKLLIEDTSAYRKILAVTFTNKATTEMKKRILYQLYGIATASPES 124

Query: 97  LS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                EI K  GK  ++   + AR  L  I+      +++TI +F +++M+    E  + 
Sbjct: 125 EGYLKEILKTSGKSVDEIRQA-ARTALKNIIHDYSRFRIETIDSFFQSVMRNLSRELELG 183

Query: 155 SHFAI 159
           ++  I
Sbjct: 184 ANLNI 188


>gi|42522842|ref|NP_968222.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574038|emb|CAE79215.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 672

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 43/143 (30%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +LV R  RL+      +  +C LT T  AA E+ HRV              
Sbjct: 26  AGAGSGKTTVLVSRTGRLISERVAQAQEICVLTFTNKAARELKHRV-------------- 71

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                    G K   S                 G+   T H+F   I+++F   A ++ +
Sbjct: 72  ---------GAKLGSSG---------------SGMWAGTFHSFGLQILRRFHKHAGLSPY 107

Query: 157 FAIADEEQS----KKLIEEAKKS 175
           F I D+       K LI++ K S
Sbjct: 108 FGIVDQSDCNAIVKDLIKDIKNS 130


>gi|15604312|ref|NP_220828.1| DNA helicase II [Rickettsia prowazekii str. Madrid E]
 gi|6226298|sp|Q9ZD95|UVRD_RICPR RecName: Full=Probable DNA helicase II homolog
 gi|3861004|emb|CAA14904.1| DNA HELICASE II (uvrD) [Rickettsia prowazekii]
 gi|292572062|gb|ADE29977.1| DNA helicase II [Rickettsia prowazekii Rp22]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EMS RV  +I  + 
Sbjct: 33 AGAGTGKTKVLTSRIANIIHQNLALPHNILAVTFTNKAAKEMSERVHNLINCYG 86


>gi|319407484|emb|CBI81134.1| DNA helicase II [Bartonella sp. 1-1C]
          Length = 815

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L L  AHP  +L +T T  AA EM  R+ E++
Sbjct: 63  VLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEMKIRIGELV 114


>gi|312795642|ref|YP_004028564.1| DNA helicase II [Burkholderia rhizoxinica HKI 454]
 gi|312167417|emb|CBW74420.1| DNA helicase II (EC 3.6.1.-) [Burkholderia rhizoxinica HKI 454]
          Length = 791

 Score = 43.5 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          DL++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P+ +L +T T 
Sbjct: 3  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLISRGEASPAGILAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMLIRL 72


>gi|307243582|ref|ZP_07525727.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM
          17678]
 gi|306493023|gb|EFM65031.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM
          17678]
          Length = 1310

 Score = 43.5 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82
          V+A AGSGKT +L++R++ L+     P     LL +T TKAAA EM  RV
Sbjct: 22 VAAAAGSGKTAVLIERIISLVTDKEKPIDIDKLLVVTFTKAAANEMRERV 71


>gi|90419186|ref|ZP_01227096.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336123|gb|EAS49864.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1]
          Length = 852

 Score = 43.5 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          D +S   +EQ  A + T     V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 9  DYLSGLNAEQRAAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAWPSQILAVTFTN 68

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 69 KAAREMKQRI 78


>gi|253565411|ref|ZP_04842866.1| ATP-dependent helicase [Bacteroides sp. 3_2_5]
 gi|251945690|gb|EES86097.1| ATP-dependent helicase [Bacteroides sp. 3_2_5]
          Length = 1057

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D  
Sbjct: 9   ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67

Query: 97  LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I  +  +  D   + A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|223986797|ref|ZP_03636779.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM
           12042]
 gi|223961230|gb|EEF65760.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM
           12042]
          Length = 721

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 70/163 (42%), Gaps = 41/163 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +I+++++ + + +L S  ++   + A AGSGKT +L  R+  L+   +  P+ +L +T T
Sbjct: 3   SIEMLNENQKKAVLTS--SQYVRIIAGAGSGKTRVLTMRIAHLIEQCHVWPNKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                                       E    +
Sbjct: 61  NKAANEMKERIRQMLP--------------------------------------EQGNAV 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + TIH+ C  I+++      +  +F + D +  + +++EA K
Sbjct: 83  FISTIHSLCVRILREDIPAMGMPRNFTVMDADDQRSILKEAYK 125


>gi|183602118|ref|ZP_02963486.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|219683030|ref|YP_002469413.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191350|ref|YP_002968744.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp.
          lactis Bl-04]
 gi|241196756|ref|YP_002970311.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp.
          lactis DSM 10140]
 gi|183218611|gb|EDT89254.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|219620680|gb|ACL28837.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249742|gb|ACS46682.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp.
          lactis Bl-04]
 gi|240251310|gb|ACS48249.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp.
          lactis DSM 10140]
 gi|289177477|gb|ADC84723.1| Putative ATP-dependent DNA helicase [Bifidobacterium animalis
          subsp. lactis BB-12]
 gi|295794343|gb|ADG33878.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp.
          lactis V9]
          Length = 1378

 Score = 43.5 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          +   + ++++ +D   +  V A AGSGKT  + +RV+ L+     P  +L LT T  AA+
Sbjct: 8  VPSAEQQRIVDADANANVIVVAGAGSGKTFTMTERVIHLIHEGVPPEHILGLTFTNKAAS 67

Query: 77 EMSHRV 82
          E+  RV
Sbjct: 68 ELLSRV 73


>gi|15643994|ref|NP_229043.1| ATP-dependent DNA helicase [Thermotoga maritima MSB8]
 gi|4981792|gb|AAD36313.1|AE001779_15 ATP-dependent DNA helicase [Thermotoga maritima MSB8]
          Length = 648

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A  GSGKT ++  ++  LL     PS +L +T T+AAA EM  R
Sbjct: 36 VIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTRAAAREMVER 81


>gi|281490502|ref|YP_003352482.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374320|gb|ADA63853.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis
           KF147]
          Length = 1203

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 23/177 (12%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+E+  R          
Sbjct: 19  KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMR---------- 68

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                L  ++ K    +   SD ++AR L +  L+      + T+ +F + + +      
Sbjct: 69  -----LERDLKKA---RQESSDENQARRLTLA-LQNLSNADIGTMDSFTQKLTKTNFNRV 119

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILE-ISNDEDI 204
           NI  +F I  ++    LI +     L    L  ++ L   K+ F E+++  S D +I
Sbjct: 120 NIDPNFRILADQTESDLIRQEVFEQLVESYLSGDDGLNISKEKFEELIKNFSKDRNI 176


>gi|227497414|ref|ZP_03927646.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833090|gb|EEH65473.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
          Length = 1152

 Score = 43.5 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
          T  +  +   P     V A AGSGKT  + QRV+ L+ + A  P  +L LT T+ AAAE+
Sbjct: 31 TPEQAAVICHPLSPVLVVAGAGSGKTATMSQRVVYLVASGAVEPGEVLGLTFTRKAAAEL 90

Query: 79 SHRV 82
          + R+
Sbjct: 91 AQRI 94


>gi|168205259|ref|ZP_02631264.1| putative UvrD/REP helicase [Clostridium perfringens E str.
          JGS1987]
 gi|170663217|gb|EDT15900.1| putative UvrD/REP helicase [Clostridium perfringens E str.
          JGS1987]
          Length = 570

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            K +Q + S  ++   + A AGSGKT ++ ++V +L+     P ++ C++ T+AAA E+
Sbjct: 8  NVKQKQFVFS-KSKKILLIACAGSGKTLVITRKVGQLIDERVSPESIYCISFTRAAAMEL 66

Query: 79 SHRVLEI 85
            R++++
Sbjct: 67 KTRLIKL 73


>gi|157828499|ref|YP_001494741.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933219|ref|YP_001650008.1| DNA helicase II [Rickettsia rickettsii str. Iowa]
 gi|157800980|gb|ABV76233.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908306|gb|ABY72602.1| DNA helicase II [Rickettsia rickettsii str. Iowa]
          Length = 653

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM+ RV  +I  + 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82


>gi|315586856|gb|ADU41237.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori 35A]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|251792813|ref|YP_003007539.1| DNA-dependent helicase II [Aggregatibacter aphrophilus NJ8700]
 gi|247534206|gb|ACS97452.1| DNA helicase II [Aggregatibacter aphrophilus NJ8700]
          Length = 724

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
          + +E +D ++  + E +  S P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2  DFAELLDGLNDKQREAV--SAPLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGVSEGSIMA 59

Query: 68 LTHTKAAAAEMSHRVLEIIT 87
          +T T  AAAEM HR+  +++
Sbjct: 60 VTFTNKAAAEMRHRIESVLS 79


>gi|238650278|ref|YP_002916130.1| DNA helicase II [Rickettsia peacockii str. Rustic]
 gi|238624376|gb|ACR47082.1| DNA helicase II [Rickettsia peacockii str. Rustic]
          Length = 653

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM+ RV  +I  + 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82


>gi|312622478|ref|YP_004024091.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202945|gb|ADQ46272.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 714

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  +L +  A P  +L +T T  AA EM  R+  +++  S
Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLADPGNILAITFTNKAADEMKERIKRLVSTQS 79


>gi|25010945|ref|NP_735340.1| exonuclease RexA [Streptococcus agalactiae NEM316]
 gi|77413173|ref|ZP_00789372.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|81588835|sp|Q8E5T9|ADDA_STRA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|23095324|emb|CAD46535.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160791|gb|EAO71903.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1207

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+  R+ + I      ++ 
Sbjct: 45  VSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKI------NES 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           + SAE   +             +  L   L       + T+ AF + I+ Q+     I+ 
Sbjct: 99  LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145

Query: 156 HFAIADEEQSKKLIE 170
            F I  ++  + +I+
Sbjct: 146 IFRILQDKNEQDVIK 160


>gi|258406127|ref|YP_003198869.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798354|gb|ACV69291.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 714

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 38/139 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  +V R+ RL+  +  P ++L LT T+ AA EM       +T  +HL+ +
Sbjct: 27  VIAGAGSGKTRTVVYRLARLVENSVPPESILLLTFTRKAANEM-------LTRAAHLAGQ 79

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L                                G+   T HAF   ++++F        
Sbjct: 80  GLH-------------------------------GVAGGTFHAFAFGMLRRFGQRLGYDQ 108

Query: 156 HFAIADEEQSKKLIEEAKK 174
             +I D   ++ ++++ ++
Sbjct: 109 GVSIMDRSDAEGVVKQVRE 127


>gi|229586731|ref|YP_002845232.1| DNA helicase II [Rickettsia africae ESF-5]
 gi|228021781|gb|ACP53489.1| DNA helicase II [Rickettsia africae ESF-5]
          Length = 653

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM+ RV  +I  + 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82


>gi|60681671|ref|YP_211815.1| putative helicase [Bacteroides fragilis NCTC 9343]
 gi|60493105|emb|CAH07886.1| putative helicase [Bacteroides fragilis NCTC 9343]
          Length = 1057

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D  
Sbjct: 9   ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67

Query: 97  LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I  +  +  D   + A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|53713424|ref|YP_099416.1| ATP-dependent helicase [Bacteroides fragilis YCH46]
 gi|52216289|dbj|BAD48882.1| ATP-dependent helicase [Bacteroides fragilis YCH46]
          Length = 1057

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D  
Sbjct: 9   ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67

Query: 97  LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I  +  +  D   + A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|84497950|ref|ZP_00996747.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
 gi|84381450|gb|EAP97333.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
          Length = 838

 Score = 43.5 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL A    P  +L +T T  AAAEM  RV +++
Sbjct: 102 IIAGAGSGKTRVLTHRIGYLLAARGVQPGQILAITFTNKAAAEMRERVQDLV 153


>gi|324991607|gb|EGC23540.1| exonuclease RexA [Streptococcus sanguinis SK353]
          Length = 1224

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 37/182 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R+         L   
Sbjct: 45  VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL------EKELGQA 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +  AE  +++            +HL   + + P    + T+ AF + ++ ++     +  
Sbjct: 99  LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
           +F I              +S    ++L N     + F ++ +   D + + L S ++ N 
Sbjct: 146 NFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSRLVKNF 187

Query: 216 TA 217
           T 
Sbjct: 188 TG 189


>gi|265763690|ref|ZP_06092258.1| ATP-dependent helicase [Bacteroides sp. 2_1_16]
 gi|263256298|gb|EEZ27644.1| ATP-dependent helicase [Bacteroides sp. 2_1_16]
          Length = 1057

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D  
Sbjct: 9   ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67

Query: 97  LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I  +  +  D   + A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|296121632|ref|YP_003629410.1| exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776]
 gi|296013972|gb|ADG67211.1| Exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776]
          Length = 1226

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 23/157 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--HP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +SA AG GKT +L +R L  L      +P ++L+ +T T  AA EM  RV          
Sbjct: 23  LSAGAGCGKTFVLTRRFLGYLKPGPEQYPLTSLVAITFTDKAAREMRDRVRATC------ 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   + +++   P ++D     H L ++L      ++ TIH+FC  I++   + + 
Sbjct: 77  --------LQRVRECPPEEAD-----HWL-SLLRDLDRARISTIHSFCGNILRSHAIASG 122

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           +   F   +   +  L+ ++ +++   +++++    +
Sbjct: 123 LDPEFTTLEASVADSLLRQSIEASATRLLVNDQPAFR 159


>gi|237750192|ref|ZP_04580672.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374086|gb|EEO24477.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 276

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          T   +++A+AGSGKT  L  R + LL      + +L LT TK AA EM  R+
Sbjct: 6  TNHIFLNASAGSGKTFALCVRYIALLFQGVPANEILTLTFTKKAANEMKERI 57


>gi|220916545|ref|YP_002491849.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954399|gb|ACL64783.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1195

 Score = 43.5 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 20/139 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           VSA AGSGKT  LV+  +RLL  +A      P  L  +T T+ AA E+            
Sbjct: 23  VSAGAGSGKTTALVELCVRLLEGSALGSPCEPRALAAITFTEKAAEEL------------ 70

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +E L A +T            S      +  L     + V TIH FC  ++++   E
Sbjct: 71  ---EERLRAAVTARARAAREADPGSPEARAWLERLHALDAMAVGTIHGFCGRLLREHAPE 127

Query: 151 ANITSHFAIADEEQSKKLI 169
           A +    A+ DE+++   I
Sbjct: 128 AGLDPEAAVLDEDRASAWI 146


>gi|239916963|ref|YP_002956521.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
 gi|281414579|ref|ZP_06246321.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
 gi|239838170|gb|ACS29967.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
          Length = 858

 Score = 43.5 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL    A P  +L +T T  AAAEM  RV  +I
Sbjct: 87  IVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNKAAAEMRERVAGLI 138


>gi|120437697|ref|YP_863383.1| UvrD/REP family helicase [Gramella forsetii KT0803]
 gi|117579847|emb|CAL68316.1| UvrD/REP family helicase [Gramella forsetii KT0803]
          Length = 1035

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 13/137 (9%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92
           +A+AGSGKT  LV+  L +L ++        +L +T T  A  EM  R++E ++ +S   
Sbjct: 9   NASAGSGKTFTLVKEYLIILYSSKKRDRYKNILAITFTNKAVGEMKTRIIESLSEFSKAE 68

Query: 93  ----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
               ++ +L A I   +     +   +K+  +L +I+      ++ TI  F   +++ F 
Sbjct: 69  VSSENNPLLKAIIE--ETGYSTECIRTKSAEILKSIIHNYAAFEISTIDGFTHRVLRTFA 126

Query: 149 LEANITSHFAI---ADE 162
            +  I  +F +   ADE
Sbjct: 127 RDLGIPMNFEVELSADE 143


>gi|92113735|ref|YP_573663.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043]
 gi|91796825|gb|ABE58964.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 22/88 (25%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS-------------- 79
           A VSA AG+GKT  LVQRVL LL +   P  +L L   +AA  + +              
Sbjct: 20  ARVSAVAGAGKTTTLVQRVLHLLASGVPPQRILVLMFNRAAREDFTAKLQREATGQRLPD 79

Query: 80  --------HRVLEIITAWSHLSDEILSA 99
                   HR+ + +T W +LS   L A
Sbjct: 80  VRTFHSIGHRLTQTLTRWGYLSPRQLIA 107


>gi|62185554|ref|YP_220339.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3]
 gi|62148621|emb|CAH64393.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          L S+    Q+ A + P     V A AG+GKT ++  R+L L+     P  +L +T T  A
Sbjct: 2  LTSELNEAQIAAVTSPLSPILVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61

Query: 75 AAEMSHRVLEIITAWSHLSD 94
          A E+  R+L  +   +H SD
Sbjct: 62 AKELKERILH-LCPQAHGSD 80


>gi|332039001|gb|EGI75430.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624]
          Length = 714

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  ++ RL+ A   P  +  +T T  AAAEM  R   +I
Sbjct: 22 VLAGAGSGKTRVITHKIGRLIQAGLEPQRITAITFTNKAAAEMRERTKGLI 72


>gi|149922812|ref|ZP_01911236.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149816355|gb|EDM75857.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 1336

 Score = 43.5 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 13/122 (10%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           DP RS  + A AG+GKT  LV+R LR++   A P  ++ +T T+AAAAEM  RV   +T 
Sbjct: 8   DPGRSVVLVAAAGTGKTWRLVRRYLRIVSRFADPEEIVAVTFTRAAAAEMRARVFAALTQ 67

Query: 89  WSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
               S  D+ + AE+  I+G        S    L +T  E      + T+H+ C  ++ +
Sbjct: 68  TRAPSPEDDPVLAEL--IEG-------CSLGERLGLT--ERVAAAPIGTLHSLCARLLAE 116

Query: 147 FP 148
           FP
Sbjct: 117 FP 118


>gi|325283117|ref|YP_004255658.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
 gi|324314926|gb|ADY26041.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
          Length = 767

 Score = 43.5 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+SQ   +Q  A+D  T  A V A AGSGKT  L+ R+  L+         +L +T T 
Sbjct: 34  DLLSQLNEQQAAAADHFTGPALVIAGAGSGKTRTLIYRIAHLINHYGVDAGEILAVTFTN 93

Query: 73  AAAAEMSHRVLEII 86
            AAAEM  R   ++
Sbjct: 94  KAAAEMRERAGRLV 107


>gi|297380108|gb|ADI34995.1| ATP-dependent DNA helicase pcrA [Helicobacter pylori v225d]
          Length = 675

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|257460429|ref|ZP_05625530.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268]
 gi|257441760|gb|EEV16902.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268]
          Length = 686

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          S+ ++ ++ T+ E   AS    +  + A AGSGKT  +  R+  LL     P   L LT 
Sbjct: 2  SDILEGLNPTQREA--ASHVDGAMLILAGAGSGKTKTITARLAYLLSNGVPPGNTLTLTF 59

Query: 71 TKAAAAEMSHRVLEIITAWS 90
          T  AA EM  R L +I+  +
Sbjct: 60 TNKAATEMRSRALNLISGLN 79


>gi|157964534|ref|YP_001499358.1| DNA helicase II [Rickettsia massiliae MTU5]
 gi|157844310|gb|ABV84811.1| DNA helicase II [Rickettsia massiliae MTU5]
          Length = 653

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM+ RV  +I  + 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82


>gi|221124374|ref|XP_002163232.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 815

 Score = 43.5 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 5  NSFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-- 61
          +SF     T  L+     EQL A + P   A + A AGSGKT +L  R+   LL N +  
Sbjct: 2  HSFAAAGSTPPLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRI-AWLLQNGYVS 60

Query: 62 PSTLLCLTHTKAAAAEMSHRV 82
          P  +L +T T  AA EM  R+
Sbjct: 61 PGGILAVTFTNKAAKEMMTRL 81


>gi|88797062|ref|ZP_01112652.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297]
 gi|88779931|gb|EAR11116.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297]
          Length = 1130

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 15/148 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR----VLEIITAW- 89
           + A+AG+GKT+ +V+  LRLLL        +L +T TKAA AE+ +R    + E +  W 
Sbjct: 23  IEASAGTGKTYNIVRIYLRLLLEKELTVDQILVMTFTKAATAEIRNRLSAFLREALQIWE 82

Query: 90  -SHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             +  D+   A    I+ +  P K+ + + R  L+ + E      + TIH FC+  + Q 
Sbjct: 83  TQNYRDDKERAFYETIRRRVDPEKARL-QMRQALLQLDEA----AIYTIHGFCKRALSQQ 137

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKS 175
              + ++ H  +  E  S++L+ +A + 
Sbjct: 138 AFFSGLSFHANM--EADSQELMLQATQD 163


>gi|327461179|gb|EGF07512.1| exonuclease RexA [Streptococcus sanguinis SK1057]
          Length = 1224

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 37/182 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R+         L   
Sbjct: 45  VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL------EKELGKA 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +  AE  +++            +HL   + + P    + T+ AF + ++ ++     +  
Sbjct: 99  LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
           +F I              +S    ++L N     + F ++ +   D + + L S ++ N 
Sbjct: 146 NFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSRLVKNF 187

Query: 216 TA 217
           T 
Sbjct: 188 TG 189


>gi|323127008|gb|ADX24305.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 1210

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+           ++
Sbjct: 46  VSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELRERI-----------EK 94

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L AEI K        SD S  +  L   L+      + T+ AF + ++ ++     I+ 
Sbjct: 95  KLYAEIAKT-------SD-SLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISP 146

Query: 156 HFAIADEEQSKKLIE 170
            F I  ++  + +++
Sbjct: 147 QFRIMQDKAEQDILK 161


>gi|188527736|ref|YP_001910423.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori Shi470]
 gi|188143976|gb|ACD48393.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori Shi470]
          Length = 676

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|308063741|gb|ADO05628.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori Sat464]
          Length = 676

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|308062228|gb|ADO04116.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori Cuz20]
          Length = 676

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|239947646|ref|ZP_04699399.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of
          Ixodes scapularis]
 gi|239921922|gb|EER21946.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of
          Ixodes scapularis]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM+ RV  +I  + 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82


>gi|154147886|ref|YP_001406551.1| UvrD/REP helicase [Campylobacter hominis ATCC BAA-381]
 gi|153803895|gb|ABS50902.1| UvrD/REP helicase [Campylobacter hominis ATCC BAA-381]
          Length = 674

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+ P     + A+AG+GKT  +V R+  LL    +P  +L LT T  AA EM       I
Sbjct: 12  ATAPMGHNLIIASAGTGKTSTIVARISHLLSLGVNPKKILLLTFTNKAANEM-------I 64

Query: 87  TAWSHLSDEILSAEIT 102
           +  S   DE ++++IT
Sbjct: 65  SRLSMKFDEKITSQIT 80


>gi|7329749|emb|CAB82770.1| DNA helicase II [Prochlorococcus marinus str. PAC2]
          Length = 624

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L++     PS++L +T T  AA EM  R LE+         
Sbjct: 29  VIAGAGSGKTRALTHRIAHLIIEYKVDPSSILAVTFTNKAAREMKDR-LEL--------- 78

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+  +  I  +KP +  ++++ R +   I  E    L + T HA    +++      +
Sbjct: 79  -LLAKRLAIITHEKPWSALEVAEQRQIRNRIYREISRELWIGTFHALFARLLRFDIDKFK 137

Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171
            P     T  F+I DE  ++ LI+E
Sbjct: 138 DPEGLTWTRQFSIYDETDAQSLIKE 162


>gi|323351323|ref|ZP_08086979.1| exonuclease RexA [Streptococcus sanguinis VMC66]
 gi|322122547|gb|EFX94258.1| exonuclease RexA [Streptococcus sanguinis VMC66]
          Length = 1224

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 19/124 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R+         L   
Sbjct: 45  VSASAGSGKTFVMVQRIIDKILRGVAVSQLFISTFTVKAAGELKERL------EKELGQA 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +  AE  +++            +HL   + + P    + T+ AF + ++ ++     +  
Sbjct: 99  LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145

Query: 156 HFAI 159
           +F I
Sbjct: 146 NFRI 149


>gi|294791935|ref|ZP_06757083.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27]
 gi|294457165|gb|EFG25527.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27]
          Length = 729

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL    +P  +L +T T  AA EM  RV
Sbjct: 27 AGAGSGKTKVLTVRIAHLLGQGVNPYEILAITFTNKAAKEMKSRV 71


>gi|251782155|ref|YP_002996457.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390784|dbj|BAH81243.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1210

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+           ++
Sbjct: 46  VSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELRERI-----------EK 94

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L AEI K        SD S  +  L   L+      + T+ AF + ++ ++     I+ 
Sbjct: 95  KLYAEIAKT-------SD-SLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISP 146

Query: 156 HFAIADEEQSKKLIE 170
            F I  ++  + +++
Sbjct: 147 QFRIMQDKAEQDILK 161


>gi|254796732|ref|YP_003081568.1| DNA helicase II, UvrD/Rep family, C-terminal fragment
           [Neorickettsia risticii str. Illinois]
 gi|254590533|gb|ACT69895.1| DNA helicase II, UvrD/Rep family, C-terminal fragment
           [Neorickettsia risticii str. Illinois]
          Length = 161

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           EQ LA +       + A AG+GKT  LV R+  L+ +  AHP+ ++ +T    AA EM  
Sbjct: 40  EQRLAVETVNGPVLILAGAGTGKTKTLVHRIAHLIKSGYAHPNQIMAVTFANKAANEMIQ 99

Query: 81  RVLEII 86
           RV EI+
Sbjct: 100 RVNEIV 105


>gi|167461916|ref|ZP_02327005.1| PcrA [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382982|ref|ZP_08056812.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321153005|gb|EFX45465.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 776

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 7  FQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPST 64
            E    +D I +   +Q  A + T+    + A AGSGKT +L  R+  L+ +  A P +
Sbjct: 1  MNETKNILDAIQRLNPQQCKAVETTQGPLLIMAGAGSGKTRVLTHRIAYLIASRKAAPWS 60

Query: 65 LLCLTHTKAAAAEMSHRV 82
          +L +T T  AA EM  RV
Sbjct: 61 ILAITFTNKAAREMQDRV 78


>gi|256545197|ref|ZP_05472563.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170]
 gi|256399238|gb|EEU12849.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170]
          Length = 729

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L   +  L+   N +P  +L +T T  AA EM  R+       S L D
Sbjct: 23  VVAGAGSGKTRVLTTSIAYLIKEKNVNPVNILAITFTNKAANEMKERI-------SDLLD 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E +S                    HL I            T H+ C  I++    +    
Sbjct: 76  EDVS--------------------HLWIG-----------TFHSICARILRMNINKIGYD 104

Query: 155 SHFAIADEEQSKKLIEE 171
           ++F I D    K L++E
Sbjct: 105 NNFTIYDTNDQKTLVKE 121


>gi|325982026|ref|YP_004294428.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
 gi|325531545|gb|ADZ26266.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
          Length = 738

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 40/157 (25%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+S    +QL A + P +S  V A AGSGKT +L  R+  L+ +    PS +L +T T  
Sbjct: 4   LLSDLNPQQLEAITLPHQSVLVLAGAGSGKTRVLTTRIAYLIQSGQVSPSGILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                         P G+ +
Sbjct: 64  AAKEMLARITAMLPI--------------------------------------NPRGMWI 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            T H  C  +++    +A +   F I D      LI+
Sbjct: 86  GTFHGLCHRMLRSHYQDAGLPQAFQILDSADQLALIK 122


>gi|150025612|ref|YP_001296438.1| hypothetical protein FP1561 [Flavobacterium psychrophilum
          JIP02/86]
 gi|149772153|emb|CAL43629.1| Protein of unknown function [Flavobacterium psychrophilum
          JIP02/86]
          Length = 633

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV----LEIITAWSH 91
          +S  AGSGKT+ LVQ V++ ++ +   S + C+T+T AA  E+  RV    L + T    
Sbjct: 29 LSGGAGSGKTYSLVQ-VIKQVIEDNPTSKVACMTYTNAAVKEIEERVNHDNLNVTTIHDF 87

Query: 92 LSDEI 96
          L D I
Sbjct: 88 LWDNI 92


>gi|229821506|ref|YP_002883032.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333]
 gi|229567419|gb|ACQ81270.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333]
          Length = 829

 Score = 43.1 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL    A P  +L +T T  AAAEM  RV  ++
Sbjct: 79  IIAGAGSGKTRVLTHRIAYLLATRRARPGEILAITFTNKAAAEMRERVEALV 130


>gi|325687712|gb|EGD29733.1| exonuclease RexA [Streptococcus sanguinis SK72]
          Length = 1224

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 19/124 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R+         L   
Sbjct: 45  VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL------EKELGQA 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +  AE  +++            +HL   + + P    + T+ AF + ++ ++     +  
Sbjct: 99  LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145

Query: 156 HFAI 159
           +F I
Sbjct: 146 NFRI 149


>gi|325130511|gb|EGC53266.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis
          OX99.30304]
          Length = 670

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV E++
Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAEML 71


>gi|7007365|emb|CAB75588.1| putative DNA helicase [Prochlorococcus marinus str. PAC1]
          Length = 512

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 28/189 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+      PS++L +T T  AA EM  R LE+         
Sbjct: 29  VVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNKAAREMKDR-LEL--------- 78

Query: 95  EILSAEITKIQGKKPNKS-DMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+  ++ +   KP ++  +++ R +   I  E    L + T HA    +++      +
Sbjct: 79  -LLAKRLSSLTHGKPWRALQVAEQREIRNRIHREISRELWIGTFHALFSRLLRFDIDKFK 137

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIE 205
            P     T  F+I DE  ++ LI+E        + LD    E KK  + I    N    +
Sbjct: 138 DPEGLTWTKQFSIYDETDAQSLIKEI---VTQDLQLDPKRFEPKKVRWAISNAKN----Q 190

Query: 206 TLISDIISN 214
            L+ D +SN
Sbjct: 191 CLLPDDLSN 199


>gi|83719895|ref|YP_443754.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264]
 gi|83653720|gb|ABC37783.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264]
          Length = 848

 Score = 43.1 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 175 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 223

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 224 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 269

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 270 PQFSIMDSDDCFGMIQEQIGTT 291


>gi|26554344|ref|NP_758278.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2]
 gi|26454354|dbj|BAC44682.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2]
          Length = 738

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 44/164 (26%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D  ++ + E + A D      V A AGSGKT +L  R + LL   N     +L  T T  
Sbjct: 7   DSFNEKQYEAITAPDDV-PLMVIAGAGSGKTAVLTYRAVYLLNELNYVSDRILGFTFTNK 65

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ ++I                      PN+S             +  G    
Sbjct: 66  AANEMKDRITKVI----------------------PNRS------------FKYIG---- 87

Query: 134 QTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKLIEEAKK 174
            T H+ C  I+++   E N   I S+F I DE+    +++E  K
Sbjct: 88  -TFHSVCLRILREDIKELNIGKINSNFTIIDEDDQNSILKEIYK 130


>gi|308183064|ref|YP_003927191.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori PeCan4]
 gi|308065249|gb|ADO07141.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori PeCan4]
          Length = 676

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|207092800|ref|ZP_03240587.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori HPKX_438_AG0C1]
          Length = 574

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+  ++    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAALASKGHNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|167767205|ref|ZP_02439258.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1]
 gi|167711180|gb|EDS21759.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1]
          Length = 745

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L+ Q   +QL A   T     V A AGSGKT  L  R   L+      P  +LC+T T  
Sbjct: 32  LLCQLNQKQLEAVTSTEGFIRVIAGAGSGKTRALSHRFAFLVNEIGILPGNILCVTFTNK 91

Query: 74  AAAEMSHRVLEII 86
           AA EM HR+  +I
Sbjct: 92  AANEMRHRIHNLI 104


>gi|149923566|ref|ZP_01911966.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149815585|gb|EDM75117.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 693

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  R+ RL+     P  ++ L+ T  AA EM  R+ +++
Sbjct: 23 VLAGAGSGKTRVITHRIARLMELGTQPEEIVALSFTNKAAEEMRERLAKMV 73


>gi|22537037|ref|NP_687888.1| exonuclease RexA [Streptococcus agalactiae 2603V/R]
 gi|81588583|sp|Q8E061|ADDA_STRA5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|22533894|gb|AAM99760.1|AE014231_18 exonuclease RexA [Streptococcus agalactiae 2603V/R]
          Length = 1207

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+  R+ + I      ++ 
Sbjct: 45  VSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKI------NES 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           + SAE   +             +  L   L       + T+ AF + I+ Q+     I+ 
Sbjct: 99  LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145

Query: 156 HFAIADEEQSKKLIE 170
            F I  ++  + +I+
Sbjct: 146 IFRILQDKNEQDVIK 160


>gi|15892547|ref|NP_360261.1| DNA helicase II [Rickettsia conorii str. Malish 7]
 gi|81595570|sp|Q92HZ6|UVRD_RICCN RecName: Full=Probable DNA helicase II homolog
 gi|15619709|gb|AAL03162.1| DNA helicase II [Rickettsia conorii str. Malish 7]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM+ RV  +I  + 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82


>gi|220931077|ref|YP_002507985.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
 gi|219992387|gb|ACL68990.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
          Length = 715

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 40/161 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCL 68
           S++ D+++    EQ  A +       + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 3   SDSSDILTGLNPEQKKAVEHFEGPLLILAGAGSGKTRVLTHRIAYLIENYGVNPLQILAV 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV           D +L                               
Sbjct: 63  TFTNKAAGEMKERV-----------DNLLGG---------------------------MA 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           G L V T H+ C  I+++   +    ++F I D +  +KLI
Sbjct: 85  GDLWVSTFHSLCARILRKEIGKIGYDNNFVIFDTDDQQKLI 125


>gi|319791122|ref|YP_004152762.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315593585|gb|ADU34651.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 705

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           +D  R   V A AGSGKT  L  RV  L+     P  LL LT ++ AA EM  R  +++
Sbjct: 44  ADDHRPLLVIAGAGSGKTSTLAHRVAHLIADGVDPQRLLLLTFSRRAAQEMERRAGQVL 102


>gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon
          299 str. F0039]
 gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon
          299 str. F0039]
          Length = 896

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 26/49 (53%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A V A  G GKT IL  R+ + LL    P  +LCLT T  AA  M  R+
Sbjct: 22 ALVFAPPGCGKTQILTLRLQKALLHGVRPQDMLCLTFTNRAARGMLERI 70


>gi|114047350|ref|YP_737900.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-7]
 gi|113888792|gb|ABI42843.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-7]
          Length = 1269

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 15/158 (9%)

Query: 20  TKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LT 69
           TK    L  DP       S  + A+AG+GKT+ +    LRLLL +     L C     +T
Sbjct: 2   TKVSPALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVVT 61

Query: 70  HTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            T AA  E+  R+   I       L  EI    +  +  K P        R   +  L++
Sbjct: 62  FTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLA-LKS 120

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEE 163
                + TIH FC+ I+     E+++   S F + D E
Sbjct: 121 LDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSE 158


>gi|76787847|ref|YP_329619.1| exonuclease RexA [Streptococcus agalactiae A909]
 gi|77406401|ref|ZP_00783461.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|77410683|ref|ZP_00787042.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|123601917|sp|Q3K1I4|ADDA_STRA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|76562904|gb|ABA45488.1| exonuclease RexA [Streptococcus agalactiae A909]
 gi|77163219|gb|EAO74171.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|77174992|gb|EAO77801.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1207

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+  R+ + I      ++ 
Sbjct: 45  VSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKI------NES 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           + SAE   +             +  L   L       + T+ AF + I+ Q+     I+ 
Sbjct: 99  LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145

Query: 156 HFAIADEEQSKKLIE 170
            F I  ++  + +I+
Sbjct: 146 IFRILQDKNEQDVIK 160


>gi|329943325|ref|ZP_08292099.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10]
 gi|313848473|emb|CBY17477.1| DNA helicase II, UvrD [Chlamydophila psittaci RD1]
 gi|325507016|gb|ADZ18654.1| ATP-dependent DNA helicase [Chlamydophila psittaci 6BC]
 gi|328814872|gb|EGF84862.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10]
 gi|328915165|gb|AEB55998.1| ATP-dependent helicase PcrA [Chlamydophila psittaci 6BC]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          L S+    Q+ A + P     V A AG+GKT ++  R+L L+     P  +L +T T  A
Sbjct: 2  LTSELNEAQVAAVTSPLSPILVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61

Query: 75 AAEMSHRVLEIITAWSHLSD 94
          A E+  R+L  +   +H SD
Sbjct: 62 AKELKERILH-LCPQAHGSD 80


>gi|301165619|emb|CBW25190.1| putative helicase/endonuclease [Bacteriovorax marinus SJ]
          Length = 1106

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 46/206 (22%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-----------------LLANAHPSTL 65
           EQ LA + T    +SA AGSGKT +LV+ V+ L                 L   ++ S +
Sbjct: 7   EQKLAIEHTGGVLLSAGAGSGKTFVLVEHVIYLASKFISENKKDDLLEFELSIQSYFSKI 66

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           + +T TK AA E+  R++  +            A+I  ++      SD+       + + 
Sbjct: 67  VLMTFTKKAAGEIYERLIHRV-----------EAQIEYVE------SDI----EYWVVVK 105

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                + + TIH FC  ++ Q  L   ++S  AI  E + ++ I     S L     +N+
Sbjct: 106 NAIDFMTISTIHGFCYKLIGQ-GLIPGLSSSVAIISESEYREKI-----SKLYERWFENH 159

Query: 186 -EELK-KAFYEILEISNDEDIETLIS 209
            EE+  + F +I+ +++++ I +++S
Sbjct: 160 IEEIPSEEFRKIISLNSNQIINSMLS 185


>gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
 gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
          Length = 862

 Score = 43.1 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 40/184 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
           + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM 
Sbjct: 5   REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  ++ +                    P K+                  ++V T H+F
Sbjct: 65  GRIQSLVGS--------------------PAKA------------------VEVSTFHSF 86

Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  I+QQ       + +   I DEE  K+L E  +   L  +   N   + K +  +   
Sbjct: 87  CFFILQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANVIAMVKEYRSLYGF 146

Query: 199 SNDE 202
            +D+
Sbjct: 147 YSDD 150


>gi|242279801|ref|YP_002991930.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
 gi|242122695|gb|ACS80391.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
          Length = 707

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 38/147 (25%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+ P     V A AGSGKT  +V R+  L+     P ++L +T T+ AA EM  R     
Sbjct: 16  ATHPQGPVLVIAGAGSGKTRTIVYRLAWLVEQGIPPESILLMTFTRKAAQEMLQR----- 70

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 ++ IL   +   QG                            T HAF  ++++Q
Sbjct: 71  ------TELILGRNLHGTQGG---------------------------TFHAFAYSVLRQ 97

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAK 173
              E    +   + D   S+  ++E K
Sbjct: 98  NAAEIGFPNGITLMDRSDSEAAVKEVK 124


>gi|325201855|gb|ADY97309.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis
          M01-240149]
 gi|325208393|gb|ADZ03845.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis NZ-05/33]
          Length = 671

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV E++
Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAEML 72


>gi|320529158|ref|ZP_08030250.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399]
 gi|320138788|gb|EFW30678.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399]
          Length = 747

 Score = 43.1 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          + A AGSGKT +L  R+  LL  +  P  +L +T T  AA EM  RV  +I   +H
Sbjct: 24 IVAGAGSGKTRVLTYRIANLLAHDVPPYRILAITFTNKAAREMRDRVDTLIGEAAH 79


>gi|296115176|ref|ZP_06833817.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978277|gb|EFG85014.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 747

 Score = 43.1 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          D +++   EQ  A + T     V A AG+GKT +L  R   +LL+  A P+ +L +T T 
Sbjct: 17 DYLARLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPNQILAVTFTN 76

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  RV  ++ A
Sbjct: 77 KAAREMRERVAGLLGA 92


>gi|157825751|ref|YP_001493471.1| DNA helicase II [Rickettsia akari str. Hartford]
 gi|157799709|gb|ABV74963.1| DNA helicase II [Rickettsia akari str. Hartford]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM+ RV  +I  + 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHKNLAPPQNILAVTFTNKAAKEMAERVNSLINCYG 82


>gi|315022895|gb|EFT35919.1| ATP-dependent DNA helicase UvrD/PcrA [Riemerella anatipestifer
          RA-YM]
 gi|325336848|gb|ADZ13122.1| Superfamily I DNA and RNA helicase [Riemerella anatipestifer
          RA-GD]
          Length = 779

 Score = 43.1 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     P  +L LT T  AA EM  R+ +++
Sbjct: 25 VLAGAGSGKTRVLTMRIAHLITNGVDPFNILALTFTNKAAREMKERIAKVV 75


>gi|317180239|dbj|BAJ58025.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori F32]
          Length = 676

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|239813731|ref|YP_002942641.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239800308|gb|ACS17375.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 701

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 38/141 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT ++  ++ RL+ A   P  +  +T T  AA+EM  R   +I         
Sbjct: 22  VLAGAGSGKTRVITHKIGRLIQAGLEPKRIAAITFTNKAASEMRERAKGLIG-------- 73

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +A+H++I            T HA    +M++      +  
Sbjct: 74  -------------------REAKHVVIC-----------TFHALGVRMMREDGAVLGLKP 103

Query: 156 HFAIADEEQSKKLIEEAKKST 176
            F+I D +   K++++A  +T
Sbjct: 104 AFSILDSDDVTKILKDAGGTT 124


>gi|207743840|ref|YP_002260232.1| dna helicase II protein (partial sequence n terminus) [Ralstonia
          solanacearum IPO1609]
 gi|206595240|emb|CAQ62167.1| probable dna helicase II protein (partial sequence n terminus)
          [Ralstonia solanacearum IPO1609]
          Length = 166

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          DL++    EQ  A + P  SA + A AGSGKT +L  R+  L+ ++   PS +L +T T 
Sbjct: 3  DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSSRVSPSGVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM+ R+
Sbjct: 63 KAAKEMTARL 72


>gi|299145467|ref|ZP_07038535.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23]
 gi|298515958|gb|EFI39839.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23]
          Length = 1056

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|296157515|ref|ZP_06840350.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295892287|gb|EFG72070.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 696

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AA EM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAALEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   ST
Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138


>gi|109947811|ref|YP_665039.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715032|emb|CAK00040.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 672

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    + A+AG+GKT  +V R+L LL     P  +L LT T  A++E
Sbjct: 6  QLNPEQLKAASALQGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASSE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|91785713|ref|YP_560919.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400]
 gi|91689667|gb|ABE32867.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400]
          Length = 696

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AA EM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAALEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   ST
Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138


>gi|312866102|ref|ZP_07726323.1| UvrD/REP helicase [Streptococcus downei F0415]
 gi|311098506|gb|EFQ56729.1| UvrD/REP helicase [Streptococcus downei F0415]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 20/147 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  L      + L   T T  AA E+  R+           ++
Sbjct: 48  VSASAGSGKTFVMVERILDRLKRGDSINQLFISTFTVKAAGELKERL-----------EK 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L+ EI          SD++  +H L   L       + T+ AF + ++  +     I+ 
Sbjct: 97  KLTQEIAAT-------SDLTLKQH-LSEQLANLATADIGTMDAFSQKLVNTYGYSLGISP 148

Query: 156 HFAI-ADEEQSKKLIEEAKKSTLASIM 181
           +F I  D+ +   L +E      AS M
Sbjct: 149 NFRILQDQSEQASLKKEVYDDLFASYM 175


>gi|212640059|ref|YP_002316579.1| ATP-dependent DNA helicase [Anoxybacillus flavithermus WK1]
 gi|212561539|gb|ACJ34594.1| ATP-dependent DNA helicase [Anoxybacillus flavithermus WK1]
          Length = 603

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCL 68
          ++E ++ I   K EQ  A     S  V A  GSGKT +L  ++LRLL     P   L C+
Sbjct: 4  YNEKLNQIKSDK-EQYEAYLSEDSTVVIAGPGSGKTTVLTLKILRLLKEYIRPPRGLACV 62

Query: 69 THTKAAAAEMSHRV 82
          T +KAAA E+  R+
Sbjct: 63 TFSKAAAKEIKDRL 76


>gi|160886083|ref|ZP_02067086.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483]
 gi|156108896|gb|EDO10641.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483]
          Length = 1056

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase PcrA [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77997258|gb|ABB16157.1| ATP-dependent DNA helicase PcrA [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 718

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AG+GKT +L  R+  LL    A+P  +L +T T  AA EM  RV  +I+ 
Sbjct: 25 VLAGAGTGKTRVLTFRIAHLLYRKMAYPHEILAITFTNKAAREMKERVERLISG 78


>gi|127513058|ref|YP_001094255.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4]
 gi|126638353|gb|ABO23996.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4]
          Length = 1223

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEII--TA 88
           + A+AG+GKT+ +    +RLLL ++  + L C     +T T AA  E+  R+ + I    
Sbjct: 19  IEASAGTGKTYTIAGLYVRLLLGDSQRAPLSCEQILVVTFTNAATQELRDRIRKKIQLAY 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            + L  E+    I  +  +   ++  S+A   L   L++     + TIH FC+ I+    
Sbjct: 79  RAFLGMEVDDPLINTLYSEAEPEA-RSQALKRLDLALKSLDEAAIFTIHGFCQRILSDMA 137

Query: 149 LEANI--TSHFAIADEE 163
            E+++   S F + D E
Sbjct: 138 FESSLLFESEFTLDDSE 154


>gi|323705998|ref|ZP_08117568.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534612|gb|EGB24393.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 40/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  L+   N  P+ ++ +T T  AA EM  RV              
Sbjct: 26  AGAGSGKTRVLTHRIAYLVREKNVSPANIIAITFTNKAAKEMKDRVE------------- 72

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                     ++L   G L V T H+ C  I+++   +     +
Sbjct: 73  --------------------------SLLGYVGDLWVSTFHSACVRILRRDIEKIGYDRN 106

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D +  K LI +  K
Sbjct: 107 FVIYDTQDQKTLISDCIK 124


>gi|319410695|emb|CBY91074.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis WUE 2594]
          Length = 671

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV E++
Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAEML 72


>gi|260592441|ref|ZP_05857899.1| ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260535487|gb|EEX18104.1| ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 843

 Score = 43.1 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 16 LISQTKSEQLLASDPTRS----------AWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
          +  Q + EQ+LA+  T            + V A AGSGKT +L  ++  LL     P  +
Sbjct: 1  MTDQEREEQILATLNTSQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLSRGLKPWNI 60

Query: 66 LCLTHTKAAAAEMSHRVLEIIT 87
          L LT T  AA EM  R+ ++ +
Sbjct: 61 LALTFTNKAAREMKERIAQVTS 82


>gi|260170417|ref|ZP_05756829.1| ATP-dependent helicase [Bacteroides sp. D2]
 gi|315918773|ref|ZP_07915013.1| ATP-dependent helicase [Bacteroides sp. D2]
 gi|313692648|gb|EFS29483.1| ATP-dependent helicase [Bacteroides sp. D2]
          Length = 1056

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|187925846|ref|YP_001897488.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187717040|gb|ACD18264.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 696

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AA EM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAALEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   ST
Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138


>gi|77407976|ref|ZP_00784726.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
 gi|77173434|gb|EAO76553.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
          Length = 1207

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 19/144 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+  R+ + I      ++ 
Sbjct: 45  VSASAGSGKTFVMVERILDKLLRGVPIESLFISTFTVKAAGELKERLEKKI------NES 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           + SAE   +             +  L   L       + T+ AF + I+ Q+     I+ 
Sbjct: 99  LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145

Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179
            F I  ++  + +I+    + L S
Sbjct: 146 IFRILQDKNEQDVIKNEVYADLFS 169


>gi|251767077|ref|ZP_02265907.2| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20]
 gi|243063896|gb|EES46082.1| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20]
          Length = 738

 Score = 43.1 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 60  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 108

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 109 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 154

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 155 PQFSIMDSDDCFGMIQEQIGTT 176


>gi|116628401|ref|YP_821020.1| ATP-dependent exoDNAse beta subunit [Streptococcus thermophilus
           LMD-9]
 gi|122267004|sp|Q03IZ8|ADDA_STRTD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116101678|gb|ABJ66824.1| DNA helicase/exodeoxyribonuclease V, subunit A [Streptococcus
           thermophilus LMD-9]
          Length = 1217

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 19/124 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L ++        L   T T  AA E+  R+ + +T   HL   
Sbjct: 45  VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLT--KHLG-- 100

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                          +++  + R  L   +   G   + T+ AF + ++ Q+     ++ 
Sbjct: 101 ---------------QAETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145

Query: 156 HFAI 159
            F I
Sbjct: 146 TFRI 149


>gi|329770175|ref|ZP_08261566.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325]
 gi|328837076|gb|EGF86718.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325]
          Length = 1221

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 31/130 (23%)

Query: 30  PTRSAW-----------VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77
           PT   W           V+A AGSGKT +L +R+ R +  +      +L LT T AAA  
Sbjct: 18  PTPPQWQAISITGADILVAAAAGSGKTEVLSERIARKVACDRWDIDKMLVLTFTTAAAKN 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   IT      + +L+ E+      + ++  + K R L+   L       V TI 
Sbjct: 78  MLVRIENKIT------ERLLATEL------EEDRLFLRKQRMLMNNAL-------VTTID 118

Query: 138 AFCEAIMQQF 147
           +FC +++++F
Sbjct: 119 SFCLSVLKKF 128


>gi|327438551|dbj|BAK14916.1| superfamily I DNA and RNA helicase [Solibacillus silvestris
          StLB046]
          Length = 752

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L++    +PS +L +T T  AA EM  R+  I+
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLVVEREVYPSKILAITFTNKAAREMRERIDGIL 80


>gi|255034727|ref|YP_003085348.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
 gi|254947483|gb|ACT92183.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
          Length = 932

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHT 71
          +++ T  +Q   S+  ++  + A AGSGKT  +  ++  LLL    A   P  ++  T+T
Sbjct: 1  MLNFTPDQQRAISENDKNLRIIACAGSGKTSTVAAKITHLLLGENNAAVEPRNIIAFTYT 60

Query: 72 KAAAAEMSHRVLEII 86
          + AAAE+ ++VL+ I
Sbjct: 61 EKAAAELRNKVLKTI 75


>gi|326384946|ref|ZP_08206620.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395]
 gi|326196336|gb|EGD53536.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395]
          Length = 1123

 Score = 43.1 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 24/148 (16%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM---SH-RVLEI 85
           P R+  + A+AG+GKT+ +V   +R +      + LL  T + AA+AE+   +H R+ E 
Sbjct: 17  PDRTLVLEASAGTGKTYAIVALAVRYIAHGVPVADLLMATFSNAASAELRDRTHSRLTEC 76

Query: 86  ITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           ++A      +  SD+ L A +        + +++ + R  L   L       + T H FC
Sbjct: 77  VSALADPEAARTSDDDLVAFLA-----DADVAEVVRRREYLTDALSDFDAATMATTHTFC 131

Query: 141 EAIM----------QQFPLEANITSHFA 158
             ++          QQFP+  N+    A
Sbjct: 132 NRMLAVLGFLGGRQQQFPILENVDEMVA 159


>gi|319744909|gb|EFV97242.1| ATP-dependent nuclease subunit A [Streptococcus agalactiae ATCC
           13813]
          Length = 1208

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+  R+ + I      ++ 
Sbjct: 46  VSASAGSGKTFVMVERILDKLLRGVPIESLFISTFTVKAAGELKERLEKKI------NES 99

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           + SAE   +             +  L   L       + T+ AF + I+ Q+     I+ 
Sbjct: 100 LKSAESDDL-------------KQFLTQQLVGIQTADIATMDAFTQKIVNQYGYTLGISP 146

Query: 156 HFAIADEEQSKKLIE 170
            F I  ++  + +I+
Sbjct: 147 IFRILQDKNEQDVIK 161


>gi|313896178|ref|ZP_07829731.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137
          str. F0430]
 gi|312974977|gb|EFR40439.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137
          str. F0430]
          Length = 747

 Score = 43.1 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          + A AGSGKT +L  R+  LL  +  P  +L +T T  AA EM  RV  +I   +H
Sbjct: 24 IVAGAGSGKTRVLTYRIANLLAHDVPPYRILAITFTNKAAREMRDRVDTLIGEAAH 79


>gi|293369068|ref|ZP_06615665.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
 gi|292635836|gb|EFF54331.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
          Length = 1056

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|47459324|ref|YP_016186.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
 gi|47458654|gb|AAT27975.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
          Length = 723

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
          E SE   L S  K ++L          + A AGSGKT +LV ++  L+   N  P  +L 
Sbjct: 2  EKSEKNLLDSLNKDQKLAVVFNDSPLRIIAGAGSGKTRVLVHKIAYLIQKMNVKPYQILA 61

Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
          +T T  AA EM  R+  ++   +H S+ ++S 
Sbjct: 62 VTFTNKAANEMKERIKTLVD--NHESEPLIST 91


>gi|315221764|ref|ZP_07863678.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211]
 gi|315189150|gb|EFU22851.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211]
          Length = 1237

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSD 94
           VSA+AGSGKT ++VQR++  +L       L   T T  AA+E+  R+  E+  A     D
Sbjct: 56  VSASAGSGKTFVMVQRIVDQILRGVRIDQLFISTFTVKAASELKERLEKELSKALKATDD 115

Query: 95  EILSAEITKIQGKKPN 110
           E L   + +     PN
Sbjct: 116 EELKQHLAQQLADIPN 131


>gi|298505014|gb|ADI83737.1| ATP-dependent helicase, UvrD superfamily [Geobacter sulfurreducens
           KN400]
          Length = 680

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 11/84 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE---------- 84
           V A AGSGKT ++  R+  L+L     P ++L +T T  AA EM  RV E          
Sbjct: 24  VLAGAGSGKTRVITCRIGHLVLHRKVAPESILAVTFTNKAAGEMKERVRELVGQGRTKGM 83

Query: 85  IITAWSHLSDEILSAEITKIQGKK 108
           I++ +  L   IL  +I ++  K+
Sbjct: 84  IVSTFHSLGVRILRRDIERLGYKR 107


>gi|212709835|ref|ZP_03317963.1| hypothetical protein PROVALCAL_00883 [Providencia alcalifaciens DSM
           30120]
 gi|212687646|gb|EEB47174.1| hypothetical protein PROVALCAL_00883 [Providencia alcalifaciens DSM
           30120]
          Length = 692

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           YH+ FQ     I+      S+ L   +   +  V A AGSGKT +LV R   LLL   A 
Sbjct: 193 YHDFFQ----NIESSPLNYSQSLSVINGEDNVLVLAGAGSGKTSVLVARAGWLLLRELAK 248

Query: 62  PSTLLCLTHTKAAAAEMSHRV 82
           P  +L L   + AAAEM+ R+
Sbjct: 249 PEQILLLAFGRKAAAEMNERI 269


>gi|77360798|ref|YP_340373.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875709|emb|CAI86930.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 1213

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 26/142 (18%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL-------ANA---HP---STLLCLTHTKAAAAE 77
           T  + + A+AG+GKT+ +    LR LL       AN+    P     +L +T T AA  E
Sbjct: 12  TGQSLIEASAGTGKTYTITGLYLRYLLGMQIADDANSLLNKPLSVEQILVVTFTDAATQE 71

Query: 78  MSHRVL-EIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +  RV   IITA   L      DE+++  I  +        D  +A  LL    ++    
Sbjct: 72  IKDRVRNRIITARDALLGQDPKDELIAGVIAAV-------DDKHRAFDLLDAAAKSMDEA 124

Query: 132 KVQTIHAFCEAIMQQFPLEANI 153
            + TIH FC+ +++Q   E+ +
Sbjct: 125 AIFTIHGFCQRMLKQHAFESGV 146


>gi|326405601|gb|ADZ62672.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis
           CV56]
          Length = 1203

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 23/177 (12%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+E+  R          
Sbjct: 19  KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMR---------- 68

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                L  ++ K    +   SD ++AR L +  L+      + T+ +F + + +      
Sbjct: 69  -----LERDLKKA---RQESSDENQARRLTLA-LQNLSNADIGTMDSFTQKLTKTNFNRV 119

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILE-ISNDEDI 204
           NI  +F I  ++    LI +     L    L  ++ L   K+ F E+++  S D +I
Sbjct: 120 NIDPNFRILADQTESDLIRQEVFEQLVESYLSEDDGLNISKEKFEELIKNFSKDRNI 176


>gi|313205710|ref|YP_004044887.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868]
 gi|312445026|gb|ADQ81381.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868]
          Length = 779

 Score = 43.1 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     P  +L LT T  AA EM  R+ +++
Sbjct: 25 VLAGAGSGKTRVLTMRIAHLITNGVDPFNILALTFTNKAAREMKERIAKVV 75


>gi|291519610|emb|CBK74831.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
          16/4]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A  GSGKT +L QRV  L+ +    + +L +T TKAAA EM  R
Sbjct: 20 VIAGPGSGKTAVLTQRVKELINSGVPANEVLVITFTKAAAIEMKER 65


>gi|256844935|ref|ZP_05550393.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2]
 gi|256718494|gb|EEU32049.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2]
          Length = 737

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 39/145 (26%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV E+
Sbjct: 17  ASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERVEEL 76

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +                          +++KA               + T H+F   +++
Sbjct: 77  V-------------------------GNIAKA-------------CTISTFHSFGMRLLR 98

Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170
            +  E    S+F I D +  K++++
Sbjct: 99  MYAKEVEYNSNFTIYDTDDQKRIVK 123


>gi|237716370|ref|ZP_04546851.1| ATP-dependent helicase [Bacteroides sp. D1]
 gi|262407972|ref|ZP_06084520.1| ATP-dependent helicase [Bacteroides sp. 2_1_22]
 gi|294644255|ref|ZP_06722024.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a]
 gi|294807965|ref|ZP_06766744.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b]
 gi|229444017|gb|EEO49808.1| ATP-dependent helicase [Bacteroides sp. D1]
 gi|262354780|gb|EEZ03872.1| ATP-dependent helicase [Bacteroides sp. 2_1_22]
 gi|292640419|gb|EFF58668.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a]
 gi|294444849|gb|EFG13537.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b]
          Length = 1056

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETGKTEQEIREAAGVALNYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|90408773|ref|ZP_01216918.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
 gi|90310117|gb|EAS38257.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
          Length = 722

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 39/144 (27%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
           S P ++  V A AGSGKT +L  R+  LL     P+  +L +T T  AA EM  R+    
Sbjct: 19  SCPQQNMLVLAGAGSGKTRVLTHRIAWLLEVEHIPTYGILAVTFTNKAAKEMRARI---- 74

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                  + I   +I+                           G+ + T H     +++ 
Sbjct: 75  -------NAICPQQIS---------------------------GMWIGTFHGIAHRLLRL 100

Query: 147 FPLEANITSHFAIADEEQSKKLIE 170
              EAN+  HF I D +  +K+I+
Sbjct: 101 HFQEANLPEHFQIIDSDDQQKMIK 124


>gi|242371786|ref|ZP_04817360.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          M23864:W1]
 gi|242350487|gb|EES42088.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          M23864:W1]
          Length = 729

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+    +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVKNMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAKEMKQRVEQLV 76


>gi|226226951|ref|YP_002761057.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
 gi|226090142|dbj|BAH38587.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
          Length = 820

 Score = 43.1 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A V A AGSGKT +L  R+ RL+   N  P  +L +T T  AA EM  R+ + +
Sbjct: 44 ALVLAGAGSGKTRVLTTRIARLIGTMNVAPHEILAVTFTNKAAGEMRARIAKFL 97


>gi|320449643|ref|YP_004201739.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
 gi|320149812|gb|ADW21190.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
          Length = 708

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           A V A AGSGKT  +V RV  L+      PS +L +T T  AA EM  R+  ++     
Sbjct: 31 PALVVAGAGSGKTRTVVHRVAYLIAKRGVFPSEILAVTFTNKAAEEMRERLKRMVKGGGE 90

Query: 92 L 92
          L
Sbjct: 91 L 91


>gi|295397183|ref|ZP_06807286.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563]
 gi|294974572|gb|EFG50296.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563]
          Length = 856

 Score = 43.1 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  +L   + +P  +L +T T  AA EM  RV  ++        
Sbjct: 42  IMAGAGSGKTRVLTHRMAYILSEKDVNPWNILAITFTNKAAKEMKERVSALV-------- 93

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P+ +DM                  V T HA C  I+++       T
Sbjct: 94  -------------GPDANDMW-----------------VSTFHAMCVRILRREAEAIGFT 123

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F IAD  + + LI+   K
Sbjct: 124 RSFTIADPSEQQTLIKRIIK 143


>gi|217969625|ref|YP_002354859.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506952|gb|ACK53963.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 744

 Score = 43.1 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
          L+S    EQL A S P + A + A AGSGKT +L  R+  L+ +    P+ +L +T T  
Sbjct: 4  LLSNLNPEQLQAVSLPAQHALILAGAGSGKTRVLTTRIAWLIQSGQVDPAGILAVTFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 64 AAKEMLARL 72


>gi|315634405|ref|ZP_07889692.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC
          33393]
 gi|315476995|gb|EFU67740.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC
          33393]
          Length = 724

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
          + +E +D ++  + E +  S P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2  DFAELLDGLNDKQREAV--SAPLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGVSEGSIMA 59

Query: 68 LTHTKAAAAEMSHRVLEII 86
          +T T  AAAEM HR+  ++
Sbjct: 60 VTFTNKAAAEMRHRIESVL 78


>gi|152991783|ref|YP_001357504.1| putative recombination protein RecB [Sulfurovum sp. NBC37-1]
 gi|151423644|dbj|BAF71147.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
           NBC37-1]
          Length = 911

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           SA+AGSGKT  L  R + LL       ++L  T T  AAAEM  RV++   +  HL +  
Sbjct: 10  SASAGSGKTFALSVRYISLLFMGEPAGSILAATFTNKAAAEMRQRVVD---SLRHLGENK 66

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              +  +++          K   +L   L +     + T+ +F   I++   LE  +   
Sbjct: 67  AFLDAIEVETGMSRDVLFRKQPEVLKRFLSSTS--HIVTLDSFFSKILRSASLELGLEPD 124

Query: 157 FAIAD---EEQSKKLIEEAKK----STLASIMLD-NNEELKKAF 192
           F   +   EE  K  ++E       S L  + +D  ++  KK F
Sbjct: 125 FVTKEQPKEELEKHFLDEVDANGMLSDLVKLAMDIEDKRFKKIF 168


>gi|325475282|gb|EGC78467.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola
           F0402]
          Length = 1128

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 29/138 (21%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +++ ++A AGSGKT +L  R +  ++        ++ LT T+ AAAEM  R+   +    
Sbjct: 24  KNSVIAAGAGSGKTKVLAARYVYFVVEKGVSVEKIIALTFTEKAAAEMHKRIYNELKKID 83

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           H                 PN  +  +  HL           K+ TI +FC  I +     
Sbjct: 84  H-----------------PNARNAIEKFHL----------AKISTIDSFCNRIARDACKS 116

Query: 151 ANITSHFAIADEEQSKKL 168
             I+  F I D  +S+KL
Sbjct: 117 FGISPDF-IIDNAESEKL 133


>gi|55823610|ref|YP_142051.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus
           CNRZ1066]
 gi|81558977|sp|Q5LY80|ADDA_STRT1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|55739595|gb|AAV63236.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus
           CNRZ1066]
          Length = 1217

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 19/124 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L ++        L   T T  AA E+  R+ + +T   HL   
Sbjct: 45  VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLT--KHLG-- 100

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                          +++  + R  L   +   G   + T+ AF + ++ Q+     ++ 
Sbjct: 101 ---------------QAETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145

Query: 156 HFAI 159
            F I
Sbjct: 146 TFRI 149


>gi|254445124|ref|ZP_05058600.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259432|gb|EDY83740.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 1170

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + A+AG+GKT+ L +  L+L L   H  TL   L +T T+AA  E++ R+ ++       
Sbjct: 11  IEASAGTGKTYRLCRIALQLTLQ--HGITLDRILAVTFTEAATEELASRIQKLYQGCLRE 68

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE------AIMQQ 146
            +     E   ++  K    D+ +A++ L   LE      + TIH+FC+      A+  Q
Sbjct: 69  LETGDPKEDVLLECLKSEDFDVERAKNALRYSLEVFDEAPISTIHSFCKRCLELVALETQ 128

Query: 147 FPLEANIT 154
            PL+A ++
Sbjct: 129 NPLDAELS 136


>gi|55821688|ref|YP_140130.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus LMG
           18311]
 gi|81560167|sp|Q5M2T7|ADDA_STRT2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|55737673|gb|AAV61315.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus
           LMG 18311]
          Length = 1217

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 19/124 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L ++        L   T T  AA E+  R+ + +T   HL   
Sbjct: 45  VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLT--KHLG-- 100

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                          +++  + R  L   +   G   + T+ AF + ++ Q+     ++ 
Sbjct: 101 ---------------QAETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145

Query: 156 HFAI 159
            F I
Sbjct: 146 TFRI 149


>gi|72162979|ref|YP_290636.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX]
 gi|71916711|gb|AAZ56613.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX]
          Length = 754

 Score = 43.1 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 38/136 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL      PS +L +T T  AAAEM  RV            
Sbjct: 28  IIAGAGSGKTRVLTHRIAYLLAERGVRPSEVLAITFTNKAAAEMKERV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   ++ G++                  T   + V T H+ C  I+++        
Sbjct: 76  -------ERLLGER------------------TASAMWVMTFHSACVRILRREAARLGYP 110

Query: 155 SHFAIADEEQSKKLIE 170
           S F I D   S++L++
Sbjct: 111 SSFTIYDSADSQRLMQ 126


>gi|325293426|ref|YP_004279290.1| DNA helicase II [Agrobacterium sp. H13-3]
 gi|325061279|gb|ADY64970.1| DNA helicase II [Agrobacterium sp. H13-3]
          Length = 824

 Score = 43.1 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           T D +S    EQ  A +    A  V A AG+GKT +L  R+  +L    A+PS +L +T 
Sbjct: 49  TPDYLSGLNPEQREAVETLDGAVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTF 108

Query: 71  TKAAAAEMSHRV 82
           T  AA EM  R+
Sbjct: 109 TNKAAREMKERI 120


>gi|320581966|gb|EFW96185.1| DNA helicase and DNA-dependent ATPase [Pichia angusta DL-1]
          Length = 775

 Score = 43.1 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 36/167 (21%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +D +++ +   + AS P     V A  G+GKT ++  RV  LLL +   P  ++  T TK
Sbjct: 5   VDDLNEHQRAAVTAS-PNGVVLVLAGPGTGKTKVITARVAYLLLHHKLPPQDVVVATFTK 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++  +  +                        A+ LLI          
Sbjct: 64  KAANEMVERLAVLLQPYPEID-----------------------AKKLLIG--------- 91

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
             T H+ C  I++++     + + F IADE  +K+LI++  ++   S
Sbjct: 92  --TFHSICVRILRKYGGLVGLNTGFKIADETDAKQLIKKVLRAMAES 136


>gi|291295632|ref|YP_003507030.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279]
 gi|290470591|gb|ADD28010.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279]
          Length = 833

 Score = 43.1 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 31/150 (20%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81
           EQ  A +      V A AG+GKTH++  R L L+      P  ++ +T T+ AA E+  R
Sbjct: 6   EQRAAVEHDGPVAVEAGAGTGKTHLMAHRYLWLVEHKGFSPLEIVAVTFTEKAARELRAR 65

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  +      L  ++    + +++                           + T+H+   
Sbjct: 66  VRRV------LQGQVAPERVYEVEAA------------------------PIGTLHSLAA 95

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            I Q++P EA +   F I DE +S   + E
Sbjct: 96  RICQEYPEEAGVHPAFRILDEVESALWLSE 125


>gi|254194688|ref|ZP_04901119.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13]
 gi|254298751|ref|ZP_04966202.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e]
 gi|157808603|gb|EDO85773.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e]
 gi|169651438|gb|EDS84131.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13]
          Length = 733

 Score = 43.1 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 60  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 108

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 109 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 154

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 155 PQFSIMDSDDCFGMIQEQIGTT 176


>gi|121533515|ref|ZP_01665343.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans
          Nor1]
 gi|121308074|gb|EAX48988.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans
          Nor1]
          Length = 733

 Score = 43.1 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  R+  LL     P  +L +T T  AAAEM  RV
Sbjct: 25 VLAGAGSGKTRVLTCRIAYLLEQGVRPYNILAITFTNKAAAEMRERV 71


>gi|52425423|ref|YP_088560.1| DNA-dependent helicase II [Mannheimia succiniciproducens MBEL55E]
 gi|52307475|gb|AAU37975.1| UvrD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 727

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 37/154 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+        +++ +T
Sbjct: 5   SELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEGISEGSIMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+   ++  S                          +R L         
Sbjct: 63  FTNKAAAEMRQRIESTLSQHS--------------------------SRRLF-------- 88

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           G+ V T H+    +++   L+AN+   F I D E
Sbjct: 89  GMWVGTFHSIAHRLLRAHYLDANLPQDFQILDSE 122


>gi|27905008|ref|NP_778134.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|32129937|sp|Q89A21|REP_BUCBP RecName: Full=ATP-dependent DNA helicase rep
 gi|27904406|gb|AAO27239.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 670

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 38/135 (28%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +++ +++ L+ + +  P  +  +T T  AA EM  R+L +++         
Sbjct: 22  AGAGSGKTRVIINKIVHLIKICHFDPKCITAITFTNKAACEMKSRILNVLSV-------- 73

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                        N S++                +K+ T HA    I++      NI S+
Sbjct: 74  -------------NVSNL----------------VKISTFHALGLEIIKSEIELLNIKSN 104

Query: 157 FAIADEEQSKKLIEE 171
           F I DE+    +++E
Sbjct: 105 FTIFDEQDQISILQE 119


>gi|229826040|ref|ZP_04452109.1| hypothetical protein GCWU000182_01404 [Abiotrophia defectiva ATCC
           49176]
 gi|229789782|gb|EEP25896.1| hypothetical protein GCWU000182_01404 [Abiotrophia defectiva ATCC
           49176]
          Length = 618

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 23/90 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII------- 86
           V A  GSGKT ++  RV R LL      P T+L +T TKAAA EM  R ++++       
Sbjct: 20  VLAGPGSGKTAVITGRV-RYLLEEMKIAPQTILVITFTKAAAMEMKERFVKLMGEPKGVQ 78

Query: 87  -------------TAWSHLSDEILSAEITK 103
                         ++ +  D+I++ E+T+
Sbjct: 79  FATFHSVFFMILRVSYGYGVDQIITEEMTR 108


>gi|89893464|ref|YP_516951.1| hypothetical protein DSY0718 [Desulfitobacterium hafniense Y51]
 gi|89332912|dbj|BAE82507.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1631

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 31   TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            +R   V+A  GSGKT ILV ++  LLL  +     LL +T ++AAA E   R+L++I   
Sbjct: 1091 SRHIVVAAGPGSGKTRILVHKLAALLLMEDVKTEQLLMVTFSRAAAHEFKKRLLKLIGNT 1150

Query: 90   SH 91
            +H
Sbjct: 1151 AH 1152


>gi|327474835|gb|EGF20240.1| exonuclease RexA [Streptococcus sanguinis SK408]
          Length = 1224

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 39/183 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R              
Sbjct: 45  VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKER-------------- 90

Query: 96  ILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                + K  G+   ++D  + + HL   + + P    + T+ AF + ++ ++     + 
Sbjct: 91  -----LEKELGQALKEADSPELKQHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLA 144

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
            +F I              +S    ++L N     + F ++ +   D + + L S ++ N
Sbjct: 145 PNFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSSLVKN 186

Query: 215 RTA 217
            T 
Sbjct: 187 FTG 189


>gi|295084357|emb|CBK65880.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Bacteroides
           xylanisolvens XB1A]
          Length = 1056

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETGKTEQEIREAAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|121608662|ref|YP_996469.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121553302|gb|ABM57451.1| ATP-dependent DNA helicase UvrD [Verminephrobacter eiseniae
          EF01-2]
          Length = 793

 Score = 43.1 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
          L+     EQL A + P   A + A AGSGKT +L  R+  LL   +A P ++L +T T  
Sbjct: 17 LLVHLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGHARPGSILAVTFTNK 76

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 77 AAKEMVARL 85


>gi|146298462|ref|YP_001193053.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
 gi|146152880|gb|ABQ03734.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
          Length = 1052

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           P+ S +  A+AGSGKT+ LV+  L+++L+   N     +L +T T  A  EM  R   I+
Sbjct: 4   PSFSIY-DASAGSGKTYTLVKEYLKIILSSPKNDAYRNILAITFTNKAVHEMKSR---IV 59

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFC 140
            + S  + E  SA+   +       + +S      K++ ++  ++       + TI  F 
Sbjct: 60  GSLSEFAKEEPSAKAVDLMEDLSRDTGLSIIQLKVKSQSIIKHLIHNYAAFDISTIDKFT 119

Query: 141 EAIMQQFPLEANITSHFAI 159
             +++ F  + N+   F +
Sbjct: 120 HKVIRAFAHDLNLPMTFEV 138


>gi|78186859|ref|YP_374902.1| exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273]
 gi|78166761|gb|ABB23859.1| Exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273]
          Length = 1203

 Score = 43.1 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LS 93
           + A+AG+GKTH +    LRL++  +  P ++L +T+T+AA+ E+  R+ + I    H L 
Sbjct: 18  IEASAGTGKTHAIGSLYLRLVVEESLLPDSILVVTYTEAASGELRGRIRDRIRDTLHALR 77

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           D   S +     G       + +A   L   L +     V TIHAFC   +Q    E+
Sbjct: 78  DPQCSQQALLEIGSAAVAVGVEEAARRLEGALGSFDTAAVHTIHAFCLRALQDHAFES 135


>gi|219851287|ref|YP_002465719.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219545546|gb|ACL15996.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 1019

 Score = 43.1 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 40/130 (30%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A +   +  + A  GSGKT ++ +++L LL     P+ +L LT ++ AAAEM+ R  
Sbjct: 7   QQTAVENAGTQLILAGPGSGKTRVITEKILHLLDHGVPPTEILALTFSEKAAAEMNDR-- 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                               I+ K+PN                    L++ T H+FC  +
Sbjct: 65  --------------------IEMKRPNLD------------------LEIHTFHSFCLEV 86

Query: 144 MQQFPLEANI 153
           +Q   L + +
Sbjct: 87  LQDNMLSSGL 96


>gi|76809077|ref|YP_331538.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b]
 gi|76578530|gb|ABA48005.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b]
          Length = 733

 Score = 43.1 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A    P  +  +T T  AAAEM  RV            
Sbjct: 60  VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 108

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 109 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 154

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   +T
Sbjct: 155 PQFSIMDSDDCFGMIQEQIGTT 176


>gi|67459079|ref|YP_246703.1| DNA helicase II [Rickettsia felis URRWXCal2]
 gi|75536488|sp|Q4ULN5|UVRD_RICFE RecName: Full=Probable DNA helicase II homolog
 gi|67004612|gb|AAY61538.1| DNA helicase II [Rickettsia felis URRWXCal2]
          Length = 654

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM+ RV  +I  + 
Sbjct: 30 AGAGTGKTKVLTSRIANIVHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 83


>gi|309388624|gb|ADO76504.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 805

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 74/245 (30%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           YH+ F  + E    +++ + E ++ +   R   V A AG+GKT +L  R+  L+     P
Sbjct: 37  YHDLFHNYGEYP--LNRKQQEAVVKN--QRYNQVIAAAGTGKTTVLAYRIKYLIEEGIEP 92

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           + +L +T++  AA EM  R+ E                IT++                  
Sbjct: 93  ARILAITYSNKAAEEMQIRLKEKFN-------------ITEVN----------------- 122

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                     V TIH+F  +I+++   E+N     +  D      ++EE       +  L
Sbjct: 123 ----------VNTIHSFANSIVKE---ESNYK--LSTVDPNDITNIVEEG-----YNQFL 162

Query: 183 DNNEELKKAFYEILEISNDE--------------------DIETLISDIISNRTALKLIF 222
           ++++E +  FY+ L   +DE                      ETL  + + +R    +  
Sbjct: 163 NSSQEFRGYFYKFLSHQDDEYLDEADFEEKTEYLAAMRTKKYETLKGEKVRSRAEKAIAD 222

Query: 223 FFFSY 227
           FFF Y
Sbjct: 223 FFFLY 227


>gi|110004261|emb|CAK98599.1| putative atp-dependent dna helicase pcra protein [Spiroplasma
          citri]
          Length = 730

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 11 SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
          +E I+ ++  + E +LA + P R   + A AGSGKT I+  ++  L+  AN  P  +  +
Sbjct: 3  NEFIENLNPNQREAVLAITGPVR---IIAGAGSGKTRIITNKIAYLIKYANLQPWRICAV 59

Query: 69 THTKAAAAEMSHRVLEII 86
          T T  A  EM  R++++I
Sbjct: 60 TFTNKATNEMKTRIVDMI 77


>gi|114564558|ref|YP_752072.1| DNA-dependent helicase II [Shewanella frigidimarina NCIMB 400]
 gi|114335851|gb|ABI73233.1| ATP-dependent DNA helicase UvrD [Shewanella frigidimarina NCIMB
          400]
          Length = 727

 Score = 43.1 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SSLLDGLNDKQREAVGA--PLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEII 86
           T  AAAEM  RV +++
Sbjct: 62 FTNKAAAEMRERVEKVV 78


>gi|317476225|ref|ZP_07935476.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907636|gb|EFV29339.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 760

 Score = 42.7 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 37/139 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL  +  P  +L LT T  AA EM  R+             
Sbjct: 25  VIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFTNKAAREMKERI------------- 71

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                          +  + +ARHL +            T H+    I+    ++   TS
Sbjct: 72  -------------ARQVGVERARHLWMG-----------TFHSIFLRILHAEAVQIGFTS 107

Query: 156 HFAIADEEQSKKLIEEAKK 174
            F I D   SK L+    K
Sbjct: 108 RFTIYDTADSKSLLRSIIK 126


>gi|301052870|ref|YP_003791081.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300375039|gb|ADK03943.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|189218921|ref|YP_001939562.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum
           V4]
 gi|189185779|gb|ACD82964.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum
           V4]
          Length = 636

 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 38/140 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           P     V A AGSGKT  L  RV  L+    +P  +L  T T  AA EM +RV       
Sbjct: 19  PLGPILVIAGAGSGKTRTLTYRVAYLIEKGINPGRILLATFTNKAAREMLNRV------- 71

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
               D +++ + ++I G                            T H  C  I++    
Sbjct: 72  ----DRLVNTDTSQIWGG---------------------------TFHHLCHKILRNHAK 100

Query: 150 EANITSHFAIADEEQSKKLI 169
                 +F I D E S +L+
Sbjct: 101 TIGFEQNFTIIDREDSIQLL 120


>gi|118497371|ref|YP_898421.1| DNA/RNA helicase superfamily I protein [Francisella tularensis
          subsp. novicida U112]
 gi|195536061|ref|ZP_03079068.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
          novicida FTE]
 gi|208779165|ref|ZP_03246511.1| UvrD/REP helicase family protein [Francisella novicida FTG]
 gi|118423277|gb|ABK89667.1| DNA and RNA helicases Superfamily I protein [Francisella novicida
          U112]
 gi|194372538|gb|EDX27249.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
          novicida FTE]
 gi|208744965|gb|EDZ91263.1| UvrD/REP helicase family protein [Francisella novicida FTG]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++++  D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A  + + R+
Sbjct: 8  QKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMYNKSAQLDFATRL 67

Query: 83 LEIIT 87
           +++ 
Sbjct: 68 KKVLN 72


>gi|34580461|ref|ZP_00141941.1| DNA helicase II [Rickettsia sibirica 246]
 gi|28261846|gb|EAA25350.1| DNA helicase II [Rickettsia sibirica 246]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM+ RV  ++  + 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLVNCYG 82


>gi|300727000|ref|ZP_07060420.1| putative DNA helicase [Prevotella bryantii B14]
 gi|299775723|gb|EFI72313.1| putative DNA helicase [Prevotella bryantii B14]
          Length = 1563

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 36   VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V+A  GSGKT +LV ++  LLL  +     LL LT ++AAA E   R++ ++   +H  D
Sbjct: 1061 VAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKKRLIALVGNAAHFVD 1120


>gi|240850877|ref|YP_002972277.1| DNA helicase II [Bartonella grahamii as4aup]
 gi|240268000|gb|ACS51588.1| DNA helicase II [Bartonella grahamii as4aup]
          Length = 779

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AH 61
           H   ++ S   D + Q   EQ  A   T     V A AG+GKT +L  R+  +L +  A 
Sbjct: 30  HTLKEQKSYNTDYLKQLNPEQQQAVMNTEGPLLVLAGAGTGKTRVLTTRISHILRSGLAS 89

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +L +T T  AA EM  R+ E+I  
Sbjct: 90  PQQILAVTFTNKAAREMKTRIGELIGG 116


>gi|134302306|ref|YP_001122275.1| UvrD/REP helicase [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|134050083|gb|ABO47154.1| UvrD/REP helicase [Francisella tularensis subsp. tularensis
          WY96-3418]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++++  D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A  + + R+
Sbjct: 8  QKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMYNKSAQLDFATRL 67

Query: 83 LEIIT 87
           +++ 
Sbjct: 68 KKVLN 72


>gi|91205500|ref|YP_537855.1| DNA helicase II [Rickettsia bellii RML369-C]
 gi|122425652|sp|Q1RIP8|UVRD_RICBR RecName: Full=Probable DNA helicase II homolog
 gi|91069044|gb|ABE04766.1| DNA helicase II [Rickettsia bellii RML369-C]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM  RV  +++++ 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMQERVHNLVSSYG 82


>gi|328676858|gb|AEB27728.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Francisella cf.
          novicida Fx1]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++++  D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A  + + R+
Sbjct: 8  QKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMYNKSAQLDFATRL 67

Query: 83 LEIIT 87
           +++ 
Sbjct: 68 KKVLN 72


>gi|329960510|ref|ZP_08298898.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
 gi|328532740|gb|EGF59527.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
          Length = 1156

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-W--SHLS 93
           A+AGSGKT  L    ++ L+ N      +L +T T  A AEM  R+L+ +   W     S
Sbjct: 82  ASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIWKSDPAS 141

Query: 94  DEILS---AEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +  LS    E+ +I G   + +++  +A   L  +L      +V+TI +F +++M+    
Sbjct: 142 EAYLSRIQEELKRIDGGTLDTAEIRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLAR 201

Query: 150 EANITSHFAI 159
           E  ++ +  I
Sbjct: 202 ELELSPNLNI 211


>gi|325918664|ref|ZP_08180765.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
          35937]
 gi|325535114|gb|EGD07009.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
          35937]
          Length = 770

 Score = 42.7 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
          T  +  +A+  T  A VSA AG+GKT  LV+R  RL+      S +LCL + K A  + S
Sbjct: 6  TDEQIAVANHVTGHALVSAVAGAGKTTTLVERCRRLIATGIPESQILCLQYNKEAQLDFS 65

Query: 80 HRV 82
           R+
Sbjct: 66 SRL 68


>gi|317502900|ref|ZP_07960997.1| ATP-dependent helicase [Prevotella salivae DSM 15606]
 gi|315665983|gb|EFV05553.1| ATP-dependent helicase [Prevotella salivae DSM 15606]
          Length = 1075

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 8/148 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS-HLSDE 95
           A+AGSGKT  L  + + LL+ N       L +T T  A  EM  R+L  +   S  L++ 
Sbjct: 9   ASAGSGKTFTLAVQYITLLVENPQAYRHTLAVTFTNKATEEMKMRILSQLYGISVGLNES 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E  K       K+ ++ A + L  ++      +V+TI AF + +++    E  +T+
Sbjct: 69  KPYLECVKQLSGLDEKTIIANAGYALRELIHHYSYFRVETIDAFFQTVLRNLARELELTA 128

Query: 156 HFAI------ADEEQSKKLIEEAKKSTL 177
           +  I       +++   +LIE+   S+L
Sbjct: 129 NLRIELNDEQVEQQAVDQLIEDLNDSSL 156


>gi|255691765|ref|ZP_05415440.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565]
 gi|260622481|gb|EEX45352.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565]
          Length = 1056

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D  
Sbjct: 9   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDRD 67

Query: 97  LSAEITKIQGKKPNKSDM---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
             A + +I+ K+  +++      A   L  +L      +V+TI +F +++M+    E  +
Sbjct: 68  SQAYLDRIK-KETGRAEQEIREAAGVALGYMLHDYSRFRVETIDSFFQSVMRNLARELEL 126

Query: 154 TSHFAI 159
           + +  I
Sbjct: 127 SPNLNI 132


>gi|171743075|ref|ZP_02918882.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC
          27678]
 gi|283455915|ref|YP_003360479.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|171278689|gb|EDT46350.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC
          27678]
 gi|283102549|gb|ADB09655.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
          Length = 885

 Score = 42.7 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  LL      S +L +T T  AAAEM  R+  I+
Sbjct: 44 IGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKAAAEMRERLAAIV 94


>gi|254372735|ref|ZP_04988224.1| hypothetical protein FTCG_00303 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|151570462|gb|EDN36116.1| hypothetical protein FTCG_00303 [Francisella novicida GA99-3549]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++++  D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A  + + R+
Sbjct: 8  QKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMYNKSAQLDFATRL 67

Query: 83 LEIIT 87
           +++ 
Sbjct: 68 KKVLN 72


>gi|327489960|gb|EGF21749.1| exonuclease RexA [Streptococcus sanguinis SK1058]
          Length = 1224

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 39/183 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R              
Sbjct: 45  VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKER-------------- 90

Query: 96  ILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                + K  G+   ++D  + + HL   + + P    + T+ AF + ++ ++     + 
Sbjct: 91  -----LEKELGQALKEADSPELKQHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLA 144

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
            +F I              +S    ++L N     + F ++ +   D + + L S ++ N
Sbjct: 145 PNFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSSLVKN 186

Query: 215 RTA 217
            T 
Sbjct: 187 FTG 189


>gi|325694960|gb|EGD36865.1| exonuclease RexA [Streptococcus sanguinis SK150]
          Length = 1224

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL 91


>gi|228471345|ref|ZP_04056146.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3]
 gi|228306846|gb|EEK15959.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3]
          Length = 778

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          +DL +  +++++        A V A AGSGKT ++  ++  L+    +P  L  LT T  
Sbjct: 2  VDLTALNEAQRVAVVYNEGPALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTNK 61

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV E++
Sbjct: 62 AAGEMRSRVSEML 74


>gi|254374192|ref|ZP_04989674.1| hypothetical protein FTDG_00355 [Francisella novicida GA99-3548]
 gi|151571912|gb|EDN37566.1| hypothetical protein FTDG_00355 [Francisella novicida GA99-3548]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++++  D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A  + + R+
Sbjct: 8  QKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMYNKSAQLDFATRL 67

Query: 83 LEIIT 87
           +++ 
Sbjct: 68 KKVLN 72


>gi|324994711|gb|EGC26624.1| exonuclease RexA [Streptococcus sanguinis SK678]
          Length = 1224

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 39/183 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R              
Sbjct: 45  VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKER-------------- 90

Query: 96  ILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                + K  G+   ++D  + + HL   + + P    + T+ AF + ++ ++     + 
Sbjct: 91  -----LEKELGQALKEADSPELKQHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLA 144

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
            +F I              +S    ++L N     + F ++ +   D + + L S ++ N
Sbjct: 145 PNFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSSLVKN 186

Query: 215 RTA 217
            T 
Sbjct: 187 FTG 189


>gi|261337326|ref|ZP_05965210.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM
          20093]
 gi|270277699|gb|EFA23553.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM
          20093]
          Length = 878

 Score = 42.7 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     +Q LA   +  A  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 13 ELVGDLNEQQALAVQYSGPALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 72

Query: 73 AAAAEMSHRVLEII 86
           AAAEM  R+  +I
Sbjct: 73 KAAAEMRERLEALI 86


>gi|167622483|ref|YP_001672777.1| DNA-dependent helicase II [Shewanella halifaxensis HAW-EB4]
 gi|167352505|gb|ABZ75118.1| DNA helicase II [Shewanella halifaxensis HAW-EB4]
          Length = 721

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P  +L +T
Sbjct: 4   SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV                    K+ G      +MS+             
Sbjct: 62  FTNKAAKEMRERV-------------------EKVAG-----GNMSR------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  +
Sbjct: 85  -MWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQLRLI----KRILKSLNLDEKQ 136


>gi|154488221|ref|ZP_02029338.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis
           L2-32]
 gi|154083372|gb|EDN82417.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis
           L2-32]
          Length = 1371

 Score = 42.7 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 38/157 (24%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+E+  RV             
Sbjct: 53  VVAGAGSGKTYTMTRRIITLIDQGISPEKILGLTFTRKAASELLSRV------------- 99

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             SA +T+ Q  +  +    K               +V T  AF + I++Q+ L      
Sbjct: 100 --SAAVTRNQAGRGTRVAFLKP--------------EVSTYDAFFQTIVRQYGL------ 137

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
              +   +Q+ + + EA    L   +LD + +   AF
Sbjct: 138 ---LVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMAF 171


>gi|119026323|ref|YP_910168.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765907|dbj|BAF40086.1| widely conserved ATP-dependent DNA helicase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 1356

 Score = 42.7 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 38/157 (24%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+E+  RV             
Sbjct: 43  VVAGAGSGKTYTMTRRIITLIDQGISPEKILGLTFTRKAASELLSRV------------- 89

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             SA +T+ Q  +  +    K               +V T  AF + I++Q+ L      
Sbjct: 90  --SAAVTRNQAGRGTRVAFLKP--------------EVSTYDAFFQTIVRQYGL------ 127

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
              +   +Q+ + + EA    L   +LD + +   AF
Sbjct: 128 ---LVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMAF 161


>gi|116493117|ref|YP_804852.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC
           25745]
 gi|116103267|gb|ABJ68410.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC
           25745]
          Length = 757

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 43/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  RV  L+     +P  +L +T T  AA EM  RV       S L D
Sbjct: 27  IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNVLAITFTNKAAREMRERVT------SLLGD 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E  +AEI                               V T HA C  I+++   +    
Sbjct: 81  E--AAEIW------------------------------VSTFHALCVRILRRNIDQLGYN 108

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             F+IAD  + + L+    K  LA +  D
Sbjct: 109 RAFSIADPSEQRTLV----KHILADLNYD 133


>gi|48478317|ref|YP_024023.1| ATP-dependent DNA helicase [Picrophilus torridus DSM 9790]
 gi|48430965|gb|AAT43830.1| ATP-dependent DNA helicase [Picrophilus torridus DSM 9790]
          Length = 852

 Score = 42.7 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          + AN G+GKT  + + V RL+     PS++LC+T T  A  EM  R+
Sbjct: 6  IIANPGTGKTMTIAESVARLIFNGEDPSSILCITFTNRAVDEMRSRI 52


>gi|327463228|gb|EGF09549.1| exonuclease RexA [Streptococcus sanguinis SK1]
          Length = 1224

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL 91


>gi|324993970|gb|EGC25889.1| exonuclease RexA [Streptococcus sanguinis SK405]
          Length = 1224

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 39/183 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R              
Sbjct: 45  VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKER-------------- 90

Query: 96  ILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                + K  G+   ++D  + + HL   + + P    + T+ AF + ++ ++     + 
Sbjct: 91  -----LEKELGQALKEADSPELKQHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLA 144

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
            +F I              +S    ++L N     + F ++ +   D + + L S ++ N
Sbjct: 145 PNFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSSLVKN 186

Query: 215 RTA 217
            T 
Sbjct: 187 FTG 189


>gi|317495616|ref|ZP_07953983.1| UvrD/REP helicase [Gemella moribillum M424]
 gi|316914235|gb|EFV35714.1| UvrD/REP helicase [Gemella moribillum M424]
          Length = 1214

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 54/130 (41%), Gaps = 31/130 (23%)

Query: 30  PTRSAW-----------VSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAE 77
           PT + W           V+A AGSGKT +L +R+ R + L       LL LT T AAA  
Sbjct: 18  PTSAQWQAIALTGADVLVAAAAGSGKTEVLSERIARKVALDRWDIDKLLVLTFTTAAAKN 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV   IT       E L A            S + K R  L         + V TI 
Sbjct: 78  MLVRVENKIT-------ERLLA------------SGLEKDRLFLRKQSMLMNDVYVSTID 118

Query: 138 AFCEAIMQQF 147
           +FC  I+++F
Sbjct: 119 SFCLNILRKF 128


>gi|157960297|ref|YP_001500331.1| DNA-dependent helicase II [Shewanella pealeana ATCC 700345]
 gi|157845297|gb|ABV85796.1| DNA helicase II [Shewanella pealeana ATCC 700345]
          Length = 721

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 45/177 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P  +L +T
Sbjct: 4   SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV                    K+ G      +MS+             
Sbjct: 62  FTNKAAKEMRERV-------------------EKVAG-----GNMSR------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  +
Sbjct: 85  -MWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQLRLI----KRILKSLNLDEKQ 136


>gi|323345466|ref|ZP_08085689.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269]
 gi|323093580|gb|EFZ36158.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269]
          Length = 790

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  ++  LL +   P  +L LT T  AA EM  R+  +I
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLHSGMKPWNILALTFTNKAANEMKSRIGNLI 75


>gi|229171974|ref|ZP_04299539.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus MM3]
 gi|228611317|gb|EEK68574.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus MM3]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|224282901|ref|ZP_03646223.1| UvrD/REP helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140060|ref|ZP_07802253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB
          41171]
 gi|313132570|gb|EFR50187.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB
          41171]
          Length = 885

 Score = 42.7 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 15 DLISQTKSEQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLLLA-NAHPST 64
          DLI+++  E +   +P ++  V          A AGSGKT +L +R+  +L    A PS 
Sbjct: 6  DLIARSAEELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQ 65

Query: 65 LLCLTHTKAAAAEMSHRVLEII 86
          +L +T T  AAAEM  R+  +I
Sbjct: 66 ILAITFTNKAAAEMRERLEGLI 87


>gi|118475254|ref|YP_891891.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414480|gb|ABK82900.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
           82-40]
          Length = 685

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 38/167 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L S  KS++  AS    +  + A AGSGKT  +  R+  L+ +    P   L LT T  A
Sbjct: 5   LDSLNKSQKEAASHIDGAMLILAGAGSGKTKTITTRLAYLISVVGIDPLNTLTLTFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+ M HR      A S L+  I S+ +                               + 
Sbjct: 65  ASTMKHR------ALSMLNSNISSSPL-------------------------------LC 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           T H F    ++ +  E    + F I D +  KK+I+E + S  AS++
Sbjct: 88  TFHKFGLLFLKFYINELGRKNSFVIIDTDDKKKIIKEFESSVAASVI 134


>gi|94987114|ref|YP_595047.1| superfamily I DNA/RNA helicase [Lawsonia intracellularis
          PHE/MN1-00]
 gi|94731363|emb|CAJ54726.1| Superfamily I DNA and RNA helicases [Lawsonia intracellularis
          PHE/MN1-00]
          Length = 711

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 18 SQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          S   S QL A + P     V A AGSGKT  ++ R+  L      PS++L LT T+ A+ 
Sbjct: 5  STLNSAQLEAVTAPDGPVLVIAGAGSGKTRTIIYRLAWLAEQGIPPSSMLLLTFTRKASQ 64

Query: 77 EMSHR 81
          EM HR
Sbjct: 65 EMLHR 69


>gi|313668563|ref|YP_004048847.1| ATP-dependent DNA helicase [Neisseria lactamica ST-640]
 gi|313006025|emb|CBN87484.1| ATP-dependent DNA helicase [Neisseria lactamica 020-06]
          Length = 671

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 49/187 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++        
Sbjct: 21  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                        KP                    GL + T HA    I+++        
Sbjct: 74  -------------KPQTR-----------------GLTICTFHALGMKILREEANHIGYK 103

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210
            +F+I D   S K+I E    T         E + KA ++I    ND    ED+    S+
Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVLQTASN 156

Query: 211 IISNRTA 217
           I   +TA
Sbjct: 157 IWEQQTA 163


>gi|258545690|ref|ZP_05705924.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
 gi|258519060|gb|EEV87919.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
          Length = 666

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ A  +P+  +  LT T  AA EM  RV  ++        
Sbjct: 25  VVAGAGSGKTGVITQKIAWLVRAAGYPANGIFALTFTNKAAREMGERVRALL-------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      GK        +AR           GL + T H     I+Q+  L A + 
Sbjct: 77  -----------GK--------EAR-----------GLHISTFHRLGLDILQKEHLAAGLR 106

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +F + D      L++E  K
Sbjct: 107 RNFTVFDARDGATLVKELSK 126


>gi|157827215|ref|YP_001496279.1| DNA helicase II [Rickettsia bellii OSU 85-389]
 gi|157802519|gb|ABV79242.1| DNA helicase II [Rickettsia bellii OSU 85-389]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM  RV  +++++ 
Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMQERVHNLVSSYG 82


>gi|30261334|ref|NP_843711.1| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. Ames]
 gi|47777916|ref|YP_017853.2| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|30255188|gb|AAP25197.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
          str. Ames]
 gi|47551621|gb|AAT30328.2| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
          str. 'Ames Ancestor']
          Length = 657

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 39 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 84


>gi|15839269|ref|NP_299957.1| ATP-dependent DNA helicase [Xylella fastidiosa 9a5c]
 gi|9107919|gb|AAF85477.1|AE004074_1 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c]
          Length = 680

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 1  MIYHNSFQEHSETIDLISQTKSEQ----LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
          + Y + +  + E + L+    S Q    L    P     V A AGSGKTH++V+++  L+
Sbjct: 7  LPYTDRYNTYPENVSLMHGLNSPQRAAVLYREGPL---LVLAGAGSGKTHVIVEKIAYLI 63

Query: 57 LANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
           ++ +P+  +  +T T  +A EM  RV + I
Sbjct: 64 TSDCYPAKRIAAITFTNKSAKEMRERVAKQI 94


>gi|328946442|gb|EGG40582.1| exonuclease RexA [Streptococcus sanguinis SK1087]
          Length = 1224

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL 91


>gi|312135101|ref|YP_004002439.1| uvrd/rep helicase [Caldicellulosiruptor owensensis OL]
 gi|311775152|gb|ADQ04639.1| UvrD/REP helicase [Caldicellulosiruptor owensensis OL]
          Length = 714

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  +L +  A P  +L +T T  AA EM  R+ ++++  S
Sbjct: 24 VLAGAGSGKTRVITYRIAYILSMGLADPDNILAITFTNKAADEMKERIKKLVSTKS 79


>gi|219852269|ref|YP_002466701.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219546528|gb|ACL16978.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 921

 Score = 42.7 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 32/111 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  + +R+  L+     P +++  T T  AAAEM+ R+             
Sbjct: 19  VIACAGSGKTETITRRIAGLVAGGVDPRSIVAFTFTDRAAAEMADRLR------------ 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                   +Q   P + D++              GL V TIHA+C+  +++
Sbjct: 67  ------LHLQTLVPGEPDLA--------------GLSVGTIHAYCDQRLKE 97


>gi|261404451|ref|YP_003240692.1| UvrD/REP helicase [Paenibacillus sp. Y412MC10]
 gi|261280914|gb|ACX62885.1| UvrD/REP helicase [Paenibacillus sp. Y412MC10]
          Length = 822

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85
           A AGSGKT +LV R   L+ A +  PS++L +T +  AAAEM  R++ +
Sbjct: 72  AGAGSGKTSVLVSRTGYLIAAKSVEPSSILLVTFSSKAAAEMKERIMAL 120


>gi|168483212|ref|ZP_02708164.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00]
 gi|168493077|ref|ZP_02717220.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06]
 gi|172043538|gb|EDT51584.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00]
 gi|183576624|gb|EDT97152.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06]
          Length = 1216

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+  R+ + I+        
Sbjct: 45  VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  KIQ       D+   +HL   + + P    + T+ +F +  + +     +I  
Sbjct: 97  ------KKIQ----ETDDVDLKQHLGCQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145

Query: 156 HFAIADEEQSKKLIE 170
           +F I   +  + L+E
Sbjct: 146 NFRILQNQSEQLLLE 160


>gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS]
 gi|119870445|ref|YP_940397.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS]
 gi|108771713|gb|ABG10435.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS]
 gi|119696534|gb|ABL93607.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS]
          Length = 785

 Score = 42.7 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 40/136 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL A +     +L +T T  AAAEM  RV+ ++        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNKAAAEMRERVVHLVG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                +AR +            V T H+ C  I++ Q  L   +
Sbjct: 93  --------------------PRARSMW-----------VATFHSTCVRILRNQASLLPGL 121

Query: 154 TSHFAIADEEQSKKLI 169
            S+F+I D + S++L+
Sbjct: 122 NSNFSIYDADDSRRLL 137


>gi|298507445|gb|ADI86168.1| ATP-dependent DNA helicase UvrD/REP [Geobacter sulfurreducens
           KN400]
          Length = 739

 Score = 42.7 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 45/149 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++V R+  L+     P+  +L +T T  AA EM  RV +++        
Sbjct: 24  VLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVTFTNKAAGEMRERVEKLVGG------ 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E P    + T H+ C  I+++        
Sbjct: 78  -------------------------------EVP---LIATFHSTCARILRREIHHLGYD 103

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           S FAI D++ S KL++E     +A + LD
Sbjct: 104 SSFAIYDDKDSGKLLKE----VMAGLGLD 128


>gi|291454013|ref|ZP_06593403.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356962|gb|EFE83864.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1201

 Score = 42.7 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 28/167 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 27  IPFTPEQMACVTAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 86

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV + +T       E L+       G  P                 TPG   + T
Sbjct: 87  GELAERVRKALTEAGVTEPEPLAPP-----GAGPQDE-------------HTPGEPVIST 128

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            HAF   ++    L   +         E S +L+ +A +  LA+ +L
Sbjct: 129 YHAFAGRLLTDHGLRLGL---------EPSTRLLADATRFQLAARVL 166


>gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA]
 gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens
           PCA]
          Length = 739

 Score = 42.7 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 45/149 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++V R+  L+     P+  +L +T T  AA EM  RV +++        
Sbjct: 24  VLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVTFTNKAAGEMRERVEKLVGG------ 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E P    + T H+ C  I+++        
Sbjct: 78  -------------------------------EVP---LIATFHSTCARILRREIHHLGYD 103

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           S FAI D++ S KL++E     +A + LD
Sbjct: 104 SSFAIYDDKDSGKLLKE----VMAGLGLD 128


>gi|311064185|ref|YP_003970910.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum PRL2010]
 gi|310866504|gb|ADP35873.1| PcrA ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 885

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 15 DLISQTKSEQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLLLA-NAHPST 64
          DLI+++  E +   +P ++  V          A AGSGKT +L +R+  +L    A PS 
Sbjct: 6  DLIARSAEELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQ 65

Query: 65 LLCLTHTKAAAAEMSHRVLEII 86
          +L +T T  AAAEM  R+  +I
Sbjct: 66 ILAITFTNKAAAEMRERLEGLI 87


>gi|310287344|ref|YP_003938602.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17]
 gi|309251280|gb|ADO53028.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17]
          Length = 885

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 15 DLISQTKSEQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLLLA-NAHPST 64
          DLI+++  E +   +P ++  V          A AGSGKT +L +R+  +L    A PS 
Sbjct: 6  DLIARSAEELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQ 65

Query: 65 LLCLTHTKAAAAEMSHRVLEII 86
          +L +T T  AAAEM  R+  +I
Sbjct: 66 ILAITFTNKAAAEMRERLEGLI 87


>gi|229028999|ref|ZP_04185098.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1271]
 gi|228732279|gb|EEL83162.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1271]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|229160287|ref|ZP_04288286.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus R309803]
 gi|228623248|gb|EEK80075.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus R309803]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|167957596|ref|ZP_02544670.1| ATP-dependent DNA helicase PcrA [candidate division TM7 single-cell
           isolate TM7c]
          Length = 702

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 35/139 (25%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT  L  R+  ++    A PS +L +T T  AA EM  R+             +
Sbjct: 24  AGAGSGKTKTLTHRIAYIISRGLAWPSQILAVTFTNKAAREMRERL-----------GSM 72

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           L+ + T+              R+ +  +          T H  C  I++      NI S+
Sbjct: 73  LNQDYTQ--------------RNFMPWM---------GTFHGICVKILRIEGGIINIPSN 109

Query: 157 FAIADEEQSKKLIEEAKKS 175
           F I DE   K ++++A KS
Sbjct: 110 FVIYDESDKKGVVKQAMKS 128


>gi|145219721|ref|YP_001130430.1| exodeoxyribonuclease V, beta subunit [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205885|gb|ABP36928.1| exodeoxyribonuclease V, beta subunit [Chlorobium phaeovibrioides
           DSM 265]
          Length = 1167

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE-IITAWSHLS 93
           V A+AG+GKT+ L +  LRL++     P ++L +T+T+AA  E+  ++ E I    + L+
Sbjct: 17  VEASAGTGKTYALTELYLRLIIEKELLPESILVVTYTEAATKELRQKIRERIRDTTAMLA 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
             +   +     G    +    +   LL   L       V TIH FC   +Q    E+  
Sbjct: 77  SPLECTKRLASLGSLAMEKGAGEVSSLLENALYLLDTASVFTIHGFCLRALQDNAFESGS 136

Query: 154 TSHFAIADEEQ 164
                IA +E+
Sbjct: 137 LYDTEIAADER 147


>gi|308069947|ref|YP_003871552.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681]
 gi|305859226|gb|ADM71014.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681]
          Length = 1339

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 25/138 (18%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           S+   +  V+A AGSGKT +LV+R++R ++          LL  T TKAAAAEM  R+ E
Sbjct: 27  SESGNNMLVAAAAGSGKTAVLVERIIRKIVDPQLGFSVDRLLVATFTKAAAAEMRQRIRE 86

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                           + ++  ++P    + +   LL           + T+H+FC  ++
Sbjct: 87  ---------------ALERVLEQEPESEHVRRQLSLL-------NRASITTLHSFCMEVI 124

Query: 145 QQFPLEANITSHFAIADE 162
           ++      +   F I +E
Sbjct: 125 RRHYQAIPLDPGFRIMNE 142


>gi|298481368|ref|ZP_06999561.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22]
 gi|298272572|gb|EFI14140.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22]
          Length = 1056

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKIQ---GKKPNKSDMSKARHLLIT-ILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             A + +I+   GK   + ++ +A  + ++ +L      +V+TI +F +++M+    E  
Sbjct: 68  SEAYLNRIKEETGK--TEQEIREAAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARELE 125

Query: 153 ITSHFAI 159
           ++ +  I
Sbjct: 126 LSPNLNI 132


>gi|270700810|ref|ZP_06223053.1| DNA helicase II [Haemophilus influenzae HK1212]
 gi|270315854|gb|EFA27952.1| DNA helicase II [Haemophilus influenzae HK1212]
          Length = 84

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ +T
Sbjct: 4  SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AAAEM HR+
Sbjct: 62 FTNKAAAEMRHRI 74


>gi|114326871|ref|YP_744028.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
 gi|114315045|gb|ABI61105.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
          Length = 759

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT +L  R   +L +  A P+ +L +T T  AA EM  RV  I+        
Sbjct: 45  VLAGAGTGKTRVLTTRFAHILKSGRAFPNQVLAVTFTNKAAREMRERVGAILG------- 97

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E   GL + T HA C  ++++      ++
Sbjct: 98  -------------------------------EKVEGLWLGTFHALCARMLRRHAEYVGLS 126

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S+F+I D +   +L+++  ++
Sbjct: 127 SNFSILDSDDQMRLLKQVAET 147


>gi|320095653|ref|ZP_08027311.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977414|gb|EFW09099.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 525

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL    A    +L +T T  AAAEM  R+  ++       D
Sbjct: 49  IMAGAGSGKTRVLTHRIAYLLATGQARAGQILAITFTNKAAAEMRERIAALV------GD 102

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E                                 G + V T H+ C  I++     A ++
Sbjct: 103 EA--------------------------------GRMWVSTFHSACVRILRYEHEAAGLS 130

Query: 155 SHFAIADEEQSKKLIE 170
             F I D + S++L++
Sbjct: 131 GSFTIYDAQDSQRLMQ 146


>gi|309379709|emb|CBX21698.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 670

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 49/187 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++        
Sbjct: 20  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                        KP                    GL + T HA    I+++        
Sbjct: 73  -------------KPQTR-----------------GLTICTFHALGMKILREEANHIGYK 102

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210
            +F+I D   S K+I E    T         E + KA ++I    ND    ED+    S+
Sbjct: 103 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVLQTASN 155

Query: 211 IISNRTA 217
           I   +TA
Sbjct: 156 IWEQQTA 162


>gi|226938999|ref|YP_002794070.1| UvrD [Laribacter hongkongensis HLHK9]
 gi|226713923|gb|ACO73061.1| UvrD [Laribacter hongkongensis HLHK9]
          Length = 710

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          D ++     QL A      A V A AGSGKT +L  R+  LL    A P+++L +T T  
Sbjct: 4  DFLAGLNPAQLAAVTTRSHALVLAGAGSGKTRVLTSRIAWLLREGLASPASVLAVTFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  RV
Sbjct: 64 AAREMQTRV 72


>gi|118476800|ref|YP_893951.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416025|gb|ABK84444.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|91791848|ref|YP_561499.1| DNA-dependent helicase II [Shewanella denitrificans OS217]
 gi|91713850|gb|ABE53776.1| ATP-dependent DNA helicase UvrD [Shewanella denitrificans OS217]
          Length = 722

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ +    P ++L +T
Sbjct: 4  SRLLDGLNDEQREAVGA--PLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AAAEM  RV ++
Sbjct: 62 FTNKAAAEMRERVEKV 77


>gi|49477145|ref|YP_035463.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328701|gb|AAT59347.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|229120851|ref|ZP_04250093.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
 gi|228662511|gb|EEL18109.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|196035398|ref|ZP_03102803.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus W]
 gi|195992075|gb|EDX56038.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus W]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|83644830|ref|YP_433265.1| UvrD/REP helicase family protein [Hahella chejuensis KCTC 2396]
 gi|83632873|gb|ABC28840.1| UvrD/REP helicase family protein [Hahella chejuensis KCTC 2396]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          D++S    EQ  A + T  A  V A AGSGKT ++  +   L+L   A P +++ +T T 
Sbjct: 3  DILSYLNEEQFKAVNATTGATLVLAGAGSGKTRVVTYKAAHLILNEKALPKSIILVTFTN 62

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+ E+I
Sbjct: 63 KAANEMRSRLGELI 76


>gi|47569157|ref|ZP_00239844.1| ATP-dependent DNA helicase [Bacillus cereus G9241]
 gi|47554129|gb|EAL12493.1| ATP-dependent DNA helicase [Bacillus cereus G9241]
 gi|324325344|gb|ADY20604.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|229195526|ref|ZP_04322294.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1293]
 gi|228588066|gb|EEK46116.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1293]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|225375304|ref|ZP_03752525.1| hypothetical protein ROSEINA2194_00929 [Roseburia inulinivorans
          DSM 16841]
 gi|225212793|gb|EEG95147.1| hypothetical protein ROSEINA2194_00929 [Roseburia inulinivorans
          DSM 16841]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          A  GSGKT ++ +R   L+   + +PS +L +T TKAAA EM  R L ++   S+
Sbjct: 24 AGPGSGKTAVITERTKNLITKYHVNPSNILVITFTKAAALEMKTRFLSLMGNGSY 78


>gi|192360051|ref|YP_001984019.1| DNA-dependent helicase II [Cellvibrio japonicus Ueda107]
 gi|190686216|gb|ACE83894.1| DNA helicase II [Cellvibrio japonicus Ueda107]
          Length = 769

 Score = 42.7 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 31/166 (18%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           +F + S  +D ++  + E +  S P  +  + A AGSGKT +LV R+  L+ +    P +
Sbjct: 27  AFMDVSHLLDNLNDAQREAV--SAPAGNQLILAGAGSGKTRVLVHRIAWLIQVEQVSPYS 84

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++ +T T  AA EM  R+           DE+    +T            S ++H+    
Sbjct: 85  IMAVTFTNKAAREMRARL-----------DELFGQSLTD-----------SGSQHI---- 118

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
                 + V T H     +++    +A +  +F I D +   ++I+
Sbjct: 119 --NSRAMWVGTFHGLAHRLLKAHWQDAGLPQNFQILDSDDQLRMIK 162


>gi|254682228|ref|ZP_05146090.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
          anthracis str. CNEVA-9066]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 13 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 58


>gi|239982165|ref|ZP_04704689.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1191

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 28/167 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 17  IPFTPEQMACVTAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV + +T       E L+       G  P                 TPG   + T
Sbjct: 77  GELAERVRKALTEAGVTEPEPLAPP-----GAGPQDE-------------HTPGEPVIST 118

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            HAF   ++    L   +         E S +L+ +A +  LA+ +L
Sbjct: 119 YHAFAGRLLTDHGLRLGL---------EPSTRLLADATRFQLAARVL 156


>gi|229154895|ref|ZP_04283009.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 4342]
 gi|228628453|gb|EEK85166.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 4342]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|228476304|ref|ZP_04061005.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119]
 gi|228269587|gb|EEK11093.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119]
          Length = 730

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+S    EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVSNMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  RV
Sbjct: 64 AAKEMKERV 72


>gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
 gi|315442898|ref|YP_004075777.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1]
 gi|145214937|gb|ABP44341.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
 gi|315261201|gb|ADT97942.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1]
          Length = 780

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 40/136 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL A +     +L +T T  AAAEM  RV+ ++        
Sbjct: 39  IVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNKAAAEMRERVVGLVG------- 91

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                +AR++ ++           T H+ C  I++ Q  L   +
Sbjct: 92  --------------------PRARNMWVS-----------TFHSTCVRILRNQASLLPGL 120

Query: 154 TSHFAIADEEQSKKLI 169
            S+F+I D + S++L+
Sbjct: 121 NSNFSIYDADDSRRLL 136


>gi|87302917|ref|ZP_01085721.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH
          5701]
 gi|87282413|gb|EAQ74372.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH
          5701]
          Length = 641

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AG+GKT  +V R+  LL     P  +L +T T+ AAAE+  R+
Sbjct: 25 VVAGAGTGKTKTMVARICHLLENGTPPERILAITFTRKAAAELVSRI 71


>gi|314934070|ref|ZP_07841433.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87]
 gi|313653181|gb|EFS16940.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+    +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVKNMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAKEMKERVEQLV 76


>gi|302383276|ref|YP_003819099.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193904|gb|ADL01476.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264]
          Length = 799

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 41/163 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           ET D +     EQ  A + T     V A AG+GKT +L  R+  +L    A P  LL +T
Sbjct: 44  ETPDYLGGLNPEQREAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVT 103

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  +I           SAE                             
Sbjct: 104 FTNKAAREMRERITHLIGP---------SAE----------------------------- 125

Query: 130 GLK-VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           GL+ + T H+    I+++ P    + S F I D +  ++L+++
Sbjct: 126 GLRWLGTFHSVAAQILRRHPELVGLKSSFTILDTDDQERLLKQ 168


>gi|261886355|ref|ZP_06010394.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 685

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 38/167 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L S  KS++  AS    +  + A AGSGKT  +  R+  L+ +    P   L LT T  A
Sbjct: 5   LDSLNKSQKEAASHIDGAMLILAGAGSGKTKTITTRLAYLISVVGIDPLNTLTLTFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+ M HR      A S L+  I S+ +                               + 
Sbjct: 65  ASTMKHR------ALSMLNSNISSSPL-------------------------------LC 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           T H F    ++ +  E    + F I D +  KK+I+E + S  AS++
Sbjct: 88  TFHKFGLLFLKFYINELGRKNSFVIIDTDDKKKIIKEFESSVAASVI 134


>gi|289577825|ref|YP_003476452.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9]
 gi|289527538|gb|ADD01890.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9]
          Length = 711

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL---- 92
           A AGSGKT +L  R+  L+      PS +L +T T  AA EM  RV E++     L    
Sbjct: 27  AGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKAAEEMKTRVEELLGYIGDLWVST 86

Query: 93  ----SDEILSAEITKI 104
               S  IL  +I KI
Sbjct: 87  FHSASVRILRRDIDKI 102


>gi|225863179|ref|YP_002748557.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           03BB102]
 gi|225786754|gb|ACO26971.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           03BB102]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|170079561|ref|YP_001736194.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002]
 gi|169887230|gb|ACB00939.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002]
          Length = 1075

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 36/185 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           ++A AG+GKTH+L  R L  L  +   P  ++ +T T+ AA E+  R+ ++I A  H   
Sbjct: 19  ITAGAGTGKTHMLAARYLHHLENDGLSPLQVVAMTFTEKAATELRARIRQVI-AQEH--- 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P+K D           L      ++ T HA    I Q+ P  A + 
Sbjct: 75  --------------PDKFDW----------LAEVEAAQISTFHAVAMRICQEHPEAAGVP 110

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
           ++F   DE +      E     LA +  +   E+    Y  L+ +    I  L+ D +S 
Sbjct: 111 ANFQPLDEWEGSIWQAEQLNVALAEMPPELYGEIP---YSTLKTA----IAALLGDPLSA 163

Query: 215 RTALK 219
           R AL+
Sbjct: 164 REALE 168


>gi|126661311|ref|ZP_01732380.1| DNA helicase II [Cyanothece sp. CCY0110]
 gi|126617407|gb|EAZ88207.1| DNA helicase II [Cyanothece sp. CCY0110]
          Length = 772

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 24/182 (13%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           +++ +SQ    Q LA +       V A AGSGKT  L  R+  L+      P ++L +T 
Sbjct: 4   SVNFLSQLNPSQRLAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP--NKSDMSKARHLLITILETP 128
           T  AA EM  R+           + + + E+   Q  +P  + S+  + R L     +T 
Sbjct: 64  TNKAAREMKDRL-----------ERLFAQEMALKQHSQPFNSLSEYEQKRLLSQVYKKTT 112

Query: 129 GGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLASIML 182
             L + T H+ C  I++    ++  E   T   +F+I DE   + L+   K   L    L
Sbjct: 113 KKLWIGTFHSLCARILRYDINKYQDERKRTWERNFSIFDESDVQSLV---KNIVLKQFNL 169

Query: 183 DN 184
           D+
Sbjct: 170 DD 171


>gi|311748551|ref|ZP_07722336.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1]
 gi|126577070|gb|EAZ81318.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1]
          Length = 752

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV-----LEIITAW 89
          A AGSGKT +L  R+  L+ A    +  +L LT T  AA+EM HR+     LE    W
Sbjct: 26 AGAGSGKTRVLTYRIAHLIYAKGVDAFNILSLTFTNKAASEMKHRIESLAGLEARNTW 83


>gi|22300001|ref|NP_683248.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1]
 gi|22296186|dbj|BAC10010.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1]
          Length = 773

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  +   P  +L +T T  AA EM  R+  + +    ++ 
Sbjct: 26  VVAGAGSGKTRTLTYRIAHLIRHHQVAPEHILAVTFTNKAAREMKERIETLFS--QEMAQ 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ------QFP 148
           ++   +   +     + ++  + R  +      P  L + T H+ C  +++      Q P
Sbjct: 84  QLYGRDWLDL-----SPAEQRRVRSRVYHTYTQP--LWIGTFHSLCARLLRLEIEAYQHP 136

Query: 149 LEANITSHFAIADEEQSKKLIEE 171
                T HF I DE   + LI++
Sbjct: 137 QGYRWTRHFTIFDESDVQSLIKQ 159


>gi|312279028|gb|ADQ63685.1| ATP-dependent helicase/nuclease subunit A [Streptococcus
           thermophilus ND03]
          Length = 1217

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 19/124 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L ++        L   T T  AA E+  R              
Sbjct: 45  VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKER-------------- 90

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L   +TK  G+   K+D  +A   L   +   G   + T+ AF + ++ Q+     ++ 
Sbjct: 91  -LEKRLTKHLGQA--KTDEERA--FLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145

Query: 156 HFAI 159
            F I
Sbjct: 146 TFRI 149


>gi|297544110|ref|YP_003676412.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841885|gb|ADH60401.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 711

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL---- 92
           A AGSGKT +L  R+  L+      PS +L +T T  AA EM  RV E++     L    
Sbjct: 27  AGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKAAEEMKTRVEELLGYIGDLWVST 86

Query: 93  ----SDEILSAEITKI 104
               S  IL  +I KI
Sbjct: 87  FHSASVRILRRDIDKI 102


>gi|212716229|ref|ZP_03324357.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660741|gb|EEB21316.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1398

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 26/146 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+E+  RV             
Sbjct: 27  VVAGAGSGKTYTMTRRIITLIEQGVSPEKILGLTFTRKAASELLSRV------------- 73

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             SA +++ Q ++  KS         +T L+     +V T  AF ++I++Q+ L      
Sbjct: 74  --SAAVSRNQRERGLKSAN-------MTFLKP----EVSTYDAFFQSIVRQYGLLVGFDQ 120

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIM 181
           +     E  + +LI       +  +M
Sbjct: 121 NTQPLSEAGAMQLIHTVLDKHMVDLM 146


>gi|206977850|ref|ZP_03238739.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           H3081.97]
 gi|217958806|ref|YP_002337354.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH187]
 gi|222094953|ref|YP_002529013.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|229138019|ref|ZP_04266617.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST26]
 gi|206743947|gb|EDZ55365.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           H3081.97]
 gi|217067646|gb|ACJ81896.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH187]
 gi|221239011|gb|ACM11721.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|228645364|gb|EEL01598.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST26]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|50954629|ref|YP_061917.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951111|gb|AAT88812.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 1125

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LL 66
           E ++ + L   T  +Q +   P   A V A AGSGKT  +  RV+  LLAN       +L
Sbjct: 38  EIADALGLPRPTGQQQAVVEAPLSPAIVVAGAGSGKTETMANRVV-WLLANGEVRVPEVL 96

Query: 67  CLTHTKAAAAEMSHRV 82
            LT T+ AA E++ RV
Sbjct: 97  GLTFTRKAAGELAERV 112


>gi|52144107|ref|YP_082721.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|51977576|gb|AAU19126.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|42780420|ref|NP_977667.1| ATP-dependent DNA helicase UvrD [Bacillus cereus ATCC 10987]
 gi|42736339|gb|AAS40275.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus ATCC
           10987]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|117920689|ref|YP_869881.1| exodeoxyribonuclease V subunit beta [Shewanella sp. ANA-3]
 gi|117613021|gb|ABK48475.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. ANA-3]
          Length = 1263

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    LRLLL +     L C     +T T AA  E+  R+   I 
Sbjct: 20  SRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVVTFTNAATEELRDRIRRRIQ 79

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 L  EI    +  +  K P        R   +  L++     + TIH FC+ I+ 
Sbjct: 80  VAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLA-LKSLDEAAIFTIHGFCQRILA 138

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 139 DLAFESSLLFESDFTLDDSE 158


>gi|49184166|ref|YP_027418.1| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. Sterne]
 gi|65318602|ref|ZP_00391561.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165872859|ref|ZP_02217485.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0488]
 gi|167636108|ref|ZP_02394413.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0442]
 gi|167641230|ref|ZP_02399484.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0193]
 gi|170686685|ref|ZP_02877905.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0465]
 gi|170708869|ref|ZP_02899303.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0389]
 gi|177654409|ref|ZP_02936306.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0174]
 gi|190568743|ref|ZP_03021647.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815925|ref|YP_002815934.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. CDC 684]
 gi|229183529|ref|ZP_04310753.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BGSC 6E1]
 gi|229601581|ref|YP_002865755.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0248]
 gi|254734022|ref|ZP_05191736.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740289|ref|ZP_05197980.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753675|ref|ZP_05205710.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Vollum]
 gi|254758771|ref|ZP_05210798.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Australia 94]
 gi|49178093|gb|AAT53469.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. Sterne]
 gi|164711436|gb|EDR16987.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0488]
 gi|167510871|gb|EDR86263.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0193]
 gi|167528462|gb|EDR91227.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0442]
 gi|170126185|gb|EDS95078.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0389]
 gi|170669208|gb|EDT19951.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0465]
 gi|172080693|gb|EDT65775.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0174]
 gi|190560159|gb|EDV14140.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004776|gb|ACP14519.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. CDC 684]
 gi|228599939|gb|EEK57535.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BGSC 6E1]
 gi|229265989|gb|ACQ47626.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0248]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|300900636|ref|ZP_07118795.1| DNA helicase II [Escherichia coli MS 198-1]
 gi|300355867|gb|EFJ71737.1| DNA helicase II [Escherichia coli MS 198-1]
          Length = 695

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 10  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 55

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 56  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 91

Query: 163 EQSKKLIE 170
           E   +L++
Sbjct: 92  EDQLRLLK 99


>gi|297568687|ref|YP_003690031.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924602|gb|ADH85412.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1303

 Score = 42.7 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT+ +    LR +L    P   +L L+ T+AA AE+  R+   + A +    
Sbjct: 20  IEASAGTGKTYSITSLYLRFILEQELPVEKILVLSFTEAATAELHGRLRARLQAAATAFQ 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           +        +Q    N     +   LL   +       V TIH+FC  ++QQ   E+ +
Sbjct: 80  QGGGTNDPFLQELVRNSRRPERDLRLLQRAVSDIDQAAVTTIHSFCHRVLQQGAFESGM 138


>gi|330723317|gb|AEC45687.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis MCLD]
          Length = 751

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 54/204 (26%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT +L +++  L+ A       +L LT T  AA EM  RV  +I A ++     
Sbjct: 36  AGAGTGKTSVLTKKIAYLIAAKITTAKKILALTFTNKAANEMKERVKNVIGADAN----- 90

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM----QQFP---- 148
                                        ET    K+ T H+ C  I+    QQF     
Sbjct: 91  -----------------------------ET----KIFTFHSLCNLILKIESQQFKKIKE 117

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILEISNDEDIE 205
            E N+  +F I DE   KK++++  +    S+   +NEE+   +KA   I  + N E   
Sbjct: 118 FE-NLDKNFNIIDERDQKKILKDVYEKLQFSL---SNEEIPNFRKAIDFISYVKNKELTF 173

Query: 206 TLISDIISNRTALKLIFFFFSYLW 229
             I     N T  KL+  + +Y++
Sbjct: 174 EQIQANAQNSTEKKLVKIYKNYVY 197


>gi|324007528|gb|EGB76747.1| DNA helicase II [Escherichia coli MS 57-2]
          Length = 696

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 11  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 56

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 57  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 92

Query: 163 EQSKKLIE 170
           E   +L++
Sbjct: 93  EDQLRLLK 100


>gi|314936042|ref|ZP_07843391.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp.
          hominis C80]
 gi|313655859|gb|EFS19602.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp.
          hominis C80]
          Length = 730

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+S    EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVSNMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  RV
Sbjct: 64 AAKEMKERV 72


>gi|50292981|ref|XP_448923.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528236|emb|CAG61893.1| unnamed protein product [Candida glabrata]
          Length = 1088

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           DPT++  V A  G+GKT +L  RV  L+L     P  ++  T T  AA EM  R+  ++ 
Sbjct: 32  DPTKALQVIAGPGTGKTKVLTSRVAYLILHYRIDPRDIIVTTFTNKAAKEMKDRLAVLLE 91

Query: 88  AWSHLSDEIL 97
                S +I+
Sbjct: 92  NTEFRSSDIM 101


>gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
 gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
          Length = 862

 Score = 42.7 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 40/184 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
           + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM 
Sbjct: 5   REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  ++ +                    P K+                  ++V T H+F
Sbjct: 65  GRIQSLVGS--------------------PAKA------------------VEVSTFHSF 86

Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  I+QQ       + +   + DEE  K+L E  +   L  +   N   + K +  +   
Sbjct: 87  CFFILQQEGKRNETLYTDVTVFDEEDCKELSEPYRPGKLREMSFANVISMVKEYRSLYGF 146

Query: 199 SNDE 202
            +D+
Sbjct: 147 YSDD 150


>gi|228913901|ref|ZP_04077526.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845840|gb|EEM90866.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|196042381|ref|ZP_03109647.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           NVH0597-99]
 gi|196026788|gb|EDX65429.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           NVH0597-99]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|301328420|ref|ZP_07221506.1| DNA helicase II [Escherichia coli MS 78-1]
 gi|300845170|gb|EFK72930.1| DNA helicase II [Escherichia coli MS 78-1]
          Length = 700

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 15  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 60

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 61  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 96

Query: 163 EQSKKLIE 170
           E   +L++
Sbjct: 97  EDQLRLLK 104


>gi|218902425|ref|YP_002450259.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH820]
 gi|228926366|ref|ZP_04089438.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228944936|ref|ZP_04107297.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|218536634|gb|ACK89032.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH820]
 gi|228814605|gb|EEM60865.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228833190|gb|EEM78755.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|254228202|ref|ZP_04921631.1| Superfamily I DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262394061|ref|YP_003285915.1| DNA helicase [Vibrio sp. Ex25]
 gi|151939275|gb|EDN58104.1| Superfamily I DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262337655|gb|ACY51450.1| DNA helicase [Vibrio sp. Ex25]
          Length = 634

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          +S  AGSGKT+ LV+ VL+ ++ ++    + C+T+T +A AE+  RVL
Sbjct: 30 LSGGAGSGKTYSLVE-VLKAVINDSPSLNIACITYTNSAVAEIEDRVL 76


>gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Streptococcus mutans UA159]
 gi|81588281|sp|Q8DT76|ADDA_STRMU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|24377868|gb|AAN59152.1|AE014982_1 putative exonuclease RexA [Streptococcus mutans UA159]
          Length = 1212

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 29/140 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++++R++  +L       L   T T  AA E+  R+ + IT    L+++
Sbjct: 45  VSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTND 104

Query: 96  -----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                 LS ++  +Q                           + T+ AF + ++ Q+   
Sbjct: 105 TALKQFLSEQLLGLQTA------------------------DIGTMDAFTQKLVTQYGYT 140

Query: 151 ANITSHFAIADEEQSKKLIE 170
             I+ +F I  ++  + L++
Sbjct: 141 LGISPNFRILQDKSEQDLLK 160


>gi|319789207|ref|YP_004150840.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
 gi|317113709|gb|ADU96199.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
          Length = 709

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 40/140 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++  +V  ++      P  +L +T T  AA EM  RV +++        
Sbjct: 25  VLAGAGSGKTRVITFKVAYMVKELRFEPERILAVTFTNKAAREMKERVEQLL-------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G+              + +L       V T H+FC  ++++   E  ++
Sbjct: 77  -----------GRS-------------VPVL-------VSTFHSFCVRLLRRHAEEVGLS 105

Query: 155 SHFAIADEEQSKKLIEEAKK 174
             F I D E  K+L+ E  K
Sbjct: 106 REFVILDGEDRKRLLSEVVK 125


>gi|282890920|ref|ZP_06299436.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499204|gb|EFB41507.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 1167

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 20/136 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEII-TAWSH 91
           + A+AG+GKT  +   ++RLLL N  P T   +L +T T+AA  ++  R+ E I  A S 
Sbjct: 17  LEASAGTGKTFSIENIIVRLLLENP-PVTIQEILVVTFTRAATHDLKVRIRENIEKALSF 75

Query: 92  LSDEILSAE---------ITKIQGKKPNKSDMSKAR--HLLITILETPGGLKVQTIHAFC 140
           L   +LS           +  IQG+ P +    K R  H L    +     ++ TIH+FC
Sbjct: 76  LQGLLLSPHYCYQEAPDYLKAIQGRDPEEIKEIKKRLEHALFEYDQA----QIFTIHSFC 131

Query: 141 EAIMQQFPLEANITSH 156
              ++    E ++  H
Sbjct: 132 LRTLKTHFFEGDLALH 147


>gi|149372162|ref|ZP_01891432.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49]
 gi|149354929|gb|EDM43491.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49]
          Length = 780

 Score = 42.7 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT +L  R+  L+     P  +L LT T  AA EM  R+  I+ A
Sbjct: 33 VIAGAGSGKTRVLTFRIAYLMSQGVDPFNILALTFTNKAAREMKSRITTIVGA 85


>gi|238020268|ref|ZP_04600694.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC
          51147]
 gi|237868662|gb|EEP69666.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC
          51147]
          Length = 746

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 7  FQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
          F   + +  L++    EQL A + P +SA V A AGSGKT +L  RV  LL    A   +
Sbjct: 3  FSSENPSQSLLNNLNPEQLAAVTYPPQSALVLAGAGSGKTRVLTTRVAWLLQNQMASVRS 62

Query: 65 LLCLTHTKAAAAEMSHRV 82
          +L +T T  AA EM  R+
Sbjct: 63 ILAVTFTNKAAKEMQTRL 80


>gi|323359567|ref|YP_004225963.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
          StLB037]
 gi|323275938|dbj|BAJ76083.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
          StLB037]
          Length = 1064

 Score = 42.7 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
          Q++A  P RS  V    GSGKT  LV RV RL+ +   P  +L LT T+  A  +
Sbjct: 41 QVVAWAPERSGVVVGAPGSGKTSTLVARVRRLVESGVDPDDILVLTPTRPGATAL 95


>gi|315293210|gb|EFU52562.1| DNA helicase II [Escherichia coli MS 153-1]
          Length = 699

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 14  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 59

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 60  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 95

Query: 163 EQSKKLIE 170
           E   +L++
Sbjct: 96  EDQLRLLK 103


>gi|300939966|ref|ZP_07154595.1| DNA helicase II [Escherichia coli MS 21-1]
 gi|300455228|gb|EFK18721.1| DNA helicase II [Escherichia coli MS 21-1]
 gi|315284765|gb|EFU44210.1| DNA helicase II [Escherichia coli MS 110-3]
          Length = 695

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 10  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 55

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 56  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 91

Query: 163 EQSKKLIE 170
           E   +L++
Sbjct: 92  EDQLRLLK 99


>gi|300985670|ref|ZP_07177557.1| DNA helicase II [Escherichia coli MS 45-1]
 gi|300408054|gb|EFJ91592.1| DNA helicase II [Escherichia coli MS 45-1]
          Length = 699

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 14  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 59

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 60  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 95

Query: 163 EQSKKLIE 170
           E   +L++
Sbjct: 96  EDQLRLLK 103


>gi|300979415|ref|ZP_07174544.1| DNA helicase II [Escherichia coli MS 200-1]
 gi|300308006|gb|EFJ62526.1| DNA helicase II [Escherichia coli MS 200-1]
          Length = 698

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 13  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 58

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 59  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 94

Query: 163 EQSKKLIE 170
           E   +L++
Sbjct: 95  EDQLRLLK 102


>gi|308235914|ref|ZP_07666651.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
           ATCC 14018]
          Length = 956

 Score = 42.7 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+   +LAN  A PS +L +T T  AAAEM  R+  +I
Sbjct: 113 IGAGAGSGKTRVLTRRI-AWILANRKAWPSQILAITFTNKAAAEMRERLASLI 164


>gi|229090274|ref|ZP_04221519.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-42]
 gi|228693054|gb|EEL46770.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-42]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|70726047|ref|YP_252961.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435]
 gi|68446771|dbj|BAE04355.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++    EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVNNMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAKEMKERVEQLV 76


>gi|319950042|ref|ZP_08024010.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319436292|gb|EFV91444.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 511

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77
          T+ +  + + PT    V A AG+GKT  +  RV+  L+AN H  P  +L LT T+ AA +
Sbjct: 20 TREQAEVIAGPTEPTLVLAGAGAGKTETMAARVV-WLVANGHARPGEILGLTFTRKAAQQ 78

Query: 78 MSHRV 82
          +S R+
Sbjct: 79 LSRRI 83


>gi|260424687|ref|ZP_05732964.2| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470]
 gi|260402848|gb|EEW96395.1| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470]
          Length = 746

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT  L  R+  +L     P  +L +T T  AA EM  RV  ++ A
Sbjct: 34 IMAGAGSGKTKALTCRIAYMLEQGIRPQNILAITFTNKAAQEMRERVHHLVGA 86


>gi|290580138|ref|YP_003484530.1| putative exonuclease [Streptococcus mutans NN2025]
 gi|254997037|dbj|BAH87638.1| putative exonuclease [Streptococcus mutans NN2025]
          Length = 1212

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 29/140 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++++R++  +L       L   T T  AA E+  R+ + IT    L+++
Sbjct: 45  VSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTND 104

Query: 96  -----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                 LS ++  +Q                           + T+ AF + ++ Q+   
Sbjct: 105 TALKQFLSEQLLGLQTA------------------------DIGTMDAFTQKLVTQYGYT 140

Query: 151 ANITSHFAIADEEQSKKLIE 170
             I+ +F I  ++  + L++
Sbjct: 141 LGISPNFRILQDKSEQDLLK 160


>gi|254726268|ref|ZP_05188050.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. A1055]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|226320834|ref|ZP_03796387.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805]
 gi|226233776|gb|EEH32504.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT ++  R+  LLL       +L LT T  AA EM  R+ +I+ +
Sbjct: 28 IIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80


>gi|29840740|ref|NP_829846.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC]
 gi|29835090|gb|AAP05724.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC]
          Length = 637

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          L S+    Q+ A + P     V A AG+GKT ++  R+L L+     P  +L +T T  A
Sbjct: 2  LTSELNEAQIAAVTSPLSPTLVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61

Query: 75 AAEMSHRVL 83
          A E+  R+L
Sbjct: 62 AKELKERIL 70


>gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
          5427]
 gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
          5427]
          Length = 837

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AG+GKT ++  R   L+     P  +LCLT T  AA EM  R+
Sbjct: 26 VLAPAGTGKTKVIALRTAYLVQHQQEPEKILCLTFTNKAAKEMKERI 72


>gi|296114709|ref|ZP_06833360.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978743|gb|EFG85470.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 166

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT+ L  RV  L+ + A P  +L LT ++ A+ EM+ RV  I 
Sbjct: 44 VIAGAGSGKTNTLAHRVAHLIASGADPRRILLLTFSRRASVEMTRRVERIC 94


>gi|290473827|ref|YP_003466701.1| DNA helicase IV [Xenorhabdus bovienii SS-2004]
 gi|289173134|emb|CBJ79907.1| DNA helicase IV [Xenorhabdus bovienii SS-2004]
          Length = 687

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPS 63
             + E  +TI+     +S+     +  +S  V A AGSGKT +L+ R   LLL   A P 
Sbjct: 183 QQYAEFFQTIETTPLNRSQCQAVVNGEKSILVLAGAGSGKTSVLIARAGWLLLRQQALPE 242

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITA 88
            +L L   + AA EM+ R+ E + A
Sbjct: 243 QVLLLAFGRQAADEMNKRIQERLGA 267


>gi|261315587|ref|ZP_05954784.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10]
 gi|261304613|gb|EEY08110.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10]
          Length = 580

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
          Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 6  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 64

Query: 66 LCLTHTKAAAAEMSHRVLEIITA 88
          L +T T  AA EM  R+  ++  
Sbjct: 65 LAVTFTNKAAREMKERIGHLVGG 87


>gi|311114987|ref|YP_003986208.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019]
 gi|310946481|gb|ADP39185.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019]
          Length = 964

 Score = 42.7 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+   +LAN  A PS +L +T T  AAAEM  R+  +I
Sbjct: 121 IGAGAGSGKTRVLTRRI-AWILANRKAWPSQILAITFTNKAAAEMRERLASLI 172


>gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS]
 gi|126237075|gb|ABO00476.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS]
          Length = 784

 Score = 42.7 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 40/136 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL A +     +L +T T  AAAEM  RV+ +I        
Sbjct: 40  IVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNKAAAEMRERVVGLIG------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                +AR +            V T H+ C  I++ Q  L   +
Sbjct: 93  --------------------PRARSMW-----------VATFHSTCVRILRNQASLLPGL 121

Query: 154 TSHFAIADEEQSKKLI 169
            S+F+I D + S++L+
Sbjct: 122 NSNFSIYDADDSRRLL 137


>gi|325963968|ref|YP_004241874.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470055|gb|ADX73740.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 1201

 Score = 42.7 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 38/216 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
           T  +  + S P     V A AGSGKT  +  RV+  L+AN    P  +L +T T+ AA E
Sbjct: 49  TPEQSAIISSPLAPRLVIAGAGSGKTATMADRVV-WLVANGWVKPEEVLGVTFTRKAAGE 107

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQT 135
           ++ R+   + A   L+ +     +++ Q  +  P+    S A       LE     KV T
Sbjct: 108 LASRIRAKLAALQRLAGQ---DTVSQDQENRLFPDGLPGSDA-------LEP----KVST 153

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-------------AKKSTLASIML 182
            H+F   I+  + L   +     +    Q+ +L  E             A KSTL   ++
Sbjct: 154 YHSFASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVVEAYDGEYGHFRAAKSTLVKAVI 213

Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
               E  +   E       ED+E  +   +S+  AL
Sbjct: 214 QLAGECAEHLQE------PEDVEAWLMARLSDFEAL 243


>gi|307266291|ref|ZP_07547831.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918669|gb|EFN48903.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 440

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 52/138 (37%), Gaps = 40/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L +R+  L+      PS +L +T T  AA EM  RV +            
Sbjct: 27  AGAGSGKTRVLTRRIAYLIKEKKVSPSNILAITFTNKAAEEMKTRVED------------ 74

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                      +L   G L V T H+ C  I+++   +     +
Sbjct: 75  ---------------------------LLGYIGDLWVSTFHSACVRILRRDIDKIGYDRN 107

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D    K LI+E  K
Sbjct: 108 FVIFDTTDQKALIQECLK 125


>gi|304373063|ref|YP_003856272.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1]
 gi|304309254|gb|ADM21734.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1]
          Length = 754

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 54/204 (26%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT +L +++  L+ A       +L LT T  AA EM  RV  +I A ++     
Sbjct: 39  AGAGTGKTSVLTKKIAYLIAAKITTAKKILALTFTNKAANEMKERVKNVIGADAN----- 93

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM----QQFP---- 148
                                        ET    K+ T H+ C  I+    QQF     
Sbjct: 94  -----------------------------ET----KIFTFHSLCNLILKIESQQFKKIKE 120

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILEISNDEDIE 205
            E N+  +F I DE   KK++++  +    S+   +NEE+   +KA   I  + N E   
Sbjct: 121 FE-NLDKNFNIIDERDQKKILKDVYEKLQFSL---SNEEIPNFRKAIDFISYVKNKELTF 176

Query: 206 TLISDIISNRTALKLIFFFFSYLW 229
             I     N T  KL+  + +Y++
Sbjct: 177 EQIQANAQNSTEKKLVKIYKNYVY 200


>gi|296271994|ref|YP_003654625.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096169|gb|ADG92119.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 684

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           +S+Q  A     S  + A AGSGKT  +  R+  L+     P+++L LT T  AA EM 
Sbjct: 10 NESQQKAAKHIDGSLLILAGAGSGKTKTITTRLAYLISIGIDPTSILTLTFTNKAATEMR 69

Query: 80 HRVLEIITA 88
           R   +I +
Sbjct: 70 ERAYAMIGS 78


>gi|150024958|ref|YP_001295784.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum
          JIP02/86]
 gi|149771499|emb|CAL42968.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum
          JIP02/86]
          Length = 777

 Score = 42.7 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+  N     +L LT T  AA EM  R+ +I+
Sbjct: 25 VIAGAGSGKTRVLTVRIANLMSQNVDAFNILALTFTNKAAREMKKRIADIV 75


>gi|124026183|ref|YP_001015299.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. NATL1A]
 gi|123961251|gb|ABM76034.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           NATL1A]
          Length = 1261

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 26/153 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  L   VLRLL    +  + +L ++ T+A A+E+  R++E +     L+ 
Sbjct: 21  IEASAGTGKTFSLSHLVLRLLTEKEYSINEILVVSFTEATASEIKARIIERLI----LAL 76

Query: 95  EILSAEITKIQGKKPNKSD-----------MSKAR-----HLLITILETPGGLKVQTIHA 138
           +I+ +  T +   KP+K D            SK R      LL+  LE      + TIH 
Sbjct: 77  KIIESINTTV---KPHKIDNVLNEWVDLNITSKERALYIASLLLEALERIDNADITTIHG 133

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           FC   +++  +E     + +I  E+ S  LI E
Sbjct: 134 FCSKTLRRESIENGNNLNPSI--EKDSNSLINE 164


>gi|254252756|ref|ZP_04946074.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia
           dolosa AUO158]
 gi|124895365|gb|EAY69245.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia
           dolosa AUO158]
          Length = 1238

 Score = 42.7 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +    +    D S A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVARLLETTLGEHGALDASTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|299136332|ref|ZP_07029516.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
 gi|298602456|gb|EFI58610.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
          Length = 982

 Score = 42.7 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 45/144 (31%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  R+  L+    A P ++L +T T  AA EM+ RV E I   S L+   
Sbjct: 69  AGAGSGKTRVITHRIAYLIKERGAAPDSILAVTFTNKAAKEMAERV-EKILGHSTLASPT 127

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA----- 151
           L+                                    T H+FC  ++++  +EA     
Sbjct: 128 LA------------------------------------TFHSFCVRVLRR-DIEALRVGN 150

Query: 152 -NITSHFAIADEEQSKKLIEEAKK 174
             +T  FAI DE   + ++++A K
Sbjct: 151 VGLTRSFAIYDENDQQAVVKQALK 174


>gi|288919731|ref|ZP_06414058.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288348920|gb|EFC83170.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 733

 Score = 42.7 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  R+  LL A    P  +L +T T  AA EM  RV  ++
Sbjct: 94  VVAGAGSGKTRVLTHRIAYLLAARGVRPGEILAITFTNKAAGEMKERVEALV 145


>gi|270297067|ref|ZP_06203266.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273054|gb|EFA18917.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1112

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAW-----S 90
           A+AGSGKT  L    ++ L+ N H    +L +T T  A AEM  R+L ++   W     S
Sbjct: 21  ASAGSGKTFTLAVEYIKHLIINPHAYRQILAVTFTNKATAEMKERILTQLYGIWKGAPSS 80

Query: 91  HLSDEILSAEITKIQGKKP----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
               E +     KI+G+      +K    +A   L  +L      +V+TI +F +++M+ 
Sbjct: 81  EAYLERIKNYKLKIKGEGGGGLTDKEIRQRAGIALQYMLHDYSRFRVETIDSFFQSVMRN 140

Query: 147 FPLEANITSHFAI 159
              E  ++ + +I
Sbjct: 141 LARELELSPNLSI 153


>gi|254493798|ref|ZP_05106969.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291]
 gi|268594855|ref|ZP_06129022.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|268596765|ref|ZP_06130932.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19]
 gi|268682226|ref|ZP_06149088.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332]
 gi|226512838|gb|EEH62183.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291]
 gi|268548244|gb|EEZ43662.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|268550553|gb|EEZ45572.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19]
 gi|268622510|gb|EEZ54910.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332]
          Length = 690

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PST 64
           F+ H   + L +Q          P    +V A AGSGKT ++ Q++  L++   + P T
Sbjct: 13 DFRRHQNMMKLNAQQLEAVRYLGGPL---FVLAGAGSGKTGVITQKIKHLIVNVGYLPHT 69

Query: 65 LLCLTHTKAAAAEMSHRVLEII 86
          +  +T T  AAAEM  RV +++
Sbjct: 70 VAAITFTNKAAAEMQERVAKML 91


>gi|281420327|ref|ZP_06251326.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205]
 gi|281405629|gb|EFB36309.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205]
          Length = 836

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  ++  LL     P +++ LT T  AA EM  R+ +++
Sbjct: 24 VIAGAGSGKTRVLTYKIAYLLSQGMKPWSIMALTFTNKAAREMKERIGKLV 74


>gi|302346508|ref|YP_003814806.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150979|gb|ADK97240.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 1100

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    + L++        +L +T T  A  EM  R+L  +   +H L D 
Sbjct: 11  ASAGSGKTFTLASEYITLVVKYPQDYKKILAVTFTNKATQEMKTRILSQLYGIAHKLPDS 70

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E    +   P  +    A   L  +       +VQTI AF +++++    E N+T+
Sbjct: 71  QAYYEQVLRKTGFPELTIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 130

Query: 156 HFAIA--DEEQSKKLIEE 171
           +  I   DE+   + ++E
Sbjct: 131 NLRIDLNDEQVEAQAVDE 148


>gi|224371114|ref|YP_002605278.1| PcrA1 [Desulfobacterium autotrophicum HRM2]
 gi|223693831|gb|ACN17114.1| PcrA1 [Desulfobacterium autotrophicum HRM2]
          Length = 619

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          ++L  Q ++  L    P   A V A AGSGKT  L  +++ L+     P+ +L +T T  
Sbjct: 1  MELSEQQQTAVLHTGSP---ALVVAGAGSGKTRTLTAKIMHLIGQGFDPTRILAITFTNK 57

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+ ++
Sbjct: 58 AAQEMKSRLYKL 69


>gi|315660158|ref|ZP_07913015.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis
          M23590]
 gi|315494839|gb|EFU83177.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis
          M23590]
          Length = 730

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
          L++    EQ  A   T     + A AGSGKT +L  R+  LL      P  +L +T T  
Sbjct: 4  LVANMNDEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAKEMKQRVEQLV 76


>gi|306833181|ref|ZP_07466311.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338]
 gi|304424755|gb|EFM27891.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338]
          Length = 1210

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 22/155 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94
           VSA+AGSGKT ++V+R++  +L       L   T T  AA E+  R+ + I+ A    +D
Sbjct: 45  VSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKISQALQETTD 104

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                            +D+    +  +  L+T     + T+ AF + ++ Q+     I+
Sbjct: 105 -----------------NDLKNYLNEQLLGLQTA---DIGTMDAFTQKLVNQYGYTLGIS 144

Query: 155 SHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             F I  D+ +   L  E      +  M  NN EL
Sbjct: 145 PTFRIMTDKSEQDILKNEVFFDLFSDYMTGNNAEL 179


>gi|260425183|ref|ZP_05779176.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470]
 gi|260404424|gb|EEW97971.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470]
          Length = 1285

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRV 82
          +SA AGSGKT +L +R+ +L+     P+    LL LT T+A+A EM  R+
Sbjct: 23 LSAAAGSGKTAVLTERIKKLITDMDDPADITELLVLTFTRASAGEMKTRI 72


>gi|229826175|ref|ZP_04452244.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC
           49176]
 gi|229789045|gb|EEP25159.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC
           49176]
          Length = 768

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 43/171 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+      P  +L LT T  AA EM  RV E+I        
Sbjct: 24  ILAGAGSGKTRVLTRRIAYLIKEYGVSPWNILALTFTNKAAREMRERVDELIE------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E    + V T H+ C  ++++F  +    
Sbjct: 77  -------------------------------EGAENIWVSTFHSACVKMLRRFIDKIGYD 105

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             F I D + +K ++    K  L ++ +DN E  +K    ++  + ++ I+
Sbjct: 106 RSFNIYDTDDTKAVV----KQVLKALNIDNKEFPEKTCLNVISNAKNDFID 152


>gi|222528367|ref|YP_002572249.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455214|gb|ACM59476.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
          Length = 951

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 30/128 (23%)

Query: 37  SANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           +A+AG GKT  +    + L+ +  A PS ++C+T+T+ AA E+ +R   II+       +
Sbjct: 8   TASAGCGKTESIANLYIDLINSQKALPSEIVCITYTEKAARELKNR---IISKAKQRGLD 64

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L+  I+KIQ                           ++TIH+FC  +++ +   A + +
Sbjct: 65  LLT--ISKIQNS------------------------HIKTIHSFCMYLLRFYWAWAKVDT 98

Query: 156 HFAIADEE 163
           +F I  E+
Sbjct: 99  NFKIVPEQ 106


>gi|88797135|ref|ZP_01112725.1| DNA helicase II [Reinekea sp. MED297]
 gi|88780004|gb|EAR11189.1| DNA helicase II [Reinekea sp. MED297]
          Length = 720

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+ A  A P ++L +T T  AA EM  RV  ++ A S    
Sbjct: 26  VLAGAGSGKTRVLTHRIGWLIAAGLASPYSVLAVTFTNKAAREMKSRVEALLEAPSQ--- 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                              GL + T H     +++    +A + 
Sbjct: 83  -----------------------------------GLWIGTFHGLAHRLLKAHWQQAKLP 107

Query: 155 SHFAIADEEQSKKLIE 170
            HF + D +   +L++
Sbjct: 108 QHFQVMDSDDQLRLVK 123


>gi|269966191|ref|ZP_06180280.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B]
 gi|269829106|gb|EEZ83351.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B]
          Length = 1227

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 38  IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A    SD ++   + +         D  +A  +L+          V TIH F
Sbjct: 98  IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 151 CQRMLTQNAFESG 163


>gi|317124193|ref|YP_004098305.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043]
 gi|315588281|gb|ADU47578.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043]
          Length = 854

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL    A P  +L +T T  AAAEM  RV  ++
Sbjct: 100 IVAGAGSGKTRVLTHRIAWLLGKRGAQPGQILAITFTNKAAAEMRERVEALV 151


>gi|268599073|ref|ZP_06133240.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11]
 gi|268603757|ref|ZP_06137924.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1]
 gi|268684377|ref|ZP_06151239.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268686698|ref|ZP_06153560.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|268583204|gb|EEZ47880.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11]
 gi|268587888|gb|EEZ52564.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1]
 gi|268624661|gb|EEZ57061.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268626982|gb|EEZ59382.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035]
          Length = 690

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PST 64
           F+ H   + L +Q          P    +V A AGSGKT ++ Q++  L++   + P T
Sbjct: 13 DFRRHQNMMKLNAQQLEAVRYLGGPL---FVLAGAGSGKTGVITQKIKHLIVNVGYLPHT 69

Query: 65 LLCLTHTKAAAAEMSHRVLEII 86
          +  +T T  AAAEM  RV +++
Sbjct: 70 VAAITFTNKAAAEMQERVAKML 91


>gi|153806585|ref|ZP_01959253.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185]
 gi|149131262|gb|EDM22468.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185]
          Length = 817

 Score = 42.4 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 11/102 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII--------- 86
           V A AGSGKT +L  ++  LL    +P  +L LT T  AA EM  R+   +         
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERIARQVGMERARYLW 85

Query: 87  -TAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILE 126
              +  +   IL AE + I    K    D + ++ LLITI++
Sbjct: 86  MGTFHSIFSRILRAEASYIGFTSKFTIYDTADSKSLLITIID 127


>gi|15611914|ref|NP_223565.1| putative ATP-dependent helicase [Helicobacter pylori J99]
 gi|4155417|gb|AAD06425.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
          Length = 676

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    + A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAASALQGHNLIIASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|254708085|ref|ZP_05169913.1| DNA helicase II [Brucella pinnipedialis M163/99/10]
          Length = 611

 Score = 42.4 bits (98), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEIITA 88
           L +T T  AA EM  R+  ++  
Sbjct: 96  LAVTFTNKAAREMKERIGHLVGG 118


>gi|288942739|ref|YP_003444979.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
 gi|288898111|gb|ADC63947.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
          Length = 732

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 40/152 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           + +++DP     + A AGSGKT +LV R+  LL +    P ++L +T T  AA EM  R+
Sbjct: 16  EAVSADPGH-LLILAGAGSGKTRVLVHRIAWLLQVQQVQPWSILAVTFTNKAAREMRSRL 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
                      DE+L   +                           GG+ V T H     
Sbjct: 75  -----------DEMLGTPV---------------------------GGMWVGTFHGLAHR 96

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            ++    +A +   F I D +   +LI+   K
Sbjct: 97  FLRAHWQDAGLPQQFQILDSDDQLRLIKRLLK 128


>gi|240115748|ref|ZP_04729810.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
 gi|268601426|ref|ZP_06135593.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
 gi|268585557|gb|EEZ50233.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
          Length = 274

 Score = 42.4 bits (98), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 49/188 (26%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++       
Sbjct: 20  FVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------ 73

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                         KP                    GL + T H+    I+++       
Sbjct: 74  --------------KPQTR-----------------GLTICTFHSLGMKILREEANHIGY 102

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLIS 209
             +F+I D   S K+I E    T         E + KA ++I    ND    ED+    S
Sbjct: 103 KKNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTAS 155

Query: 210 DIISNRTA 217
           ++   +TA
Sbjct: 156 NVWEQQTA 163


>gi|121605345|ref|YP_982674.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120594314|gb|ABM37753.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 1141

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 20  TKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           T   Q+ A++   +A+ + A  G+GKT  LVQR+  LL     P ++L LT +  AA E+
Sbjct: 200 TDLTQIAAANHRNTAFQLQAGPGTGKTRTLVQRIQSLLTDGVDPMSILVLTFSNKAANEL 259

Query: 79  SHRV 82
           S R+
Sbjct: 260 SERL 263


>gi|319794637|ref|YP_004156277.1| pyridoxaL-5'-phosphate-dependent protein beta subunit [Variovorax
           paradoxus EPS]
 gi|315597100|gb|ADU38166.1| Pyridoxal-5'-phosphate-dependent protein beta subunit [Variovorax
           paradoxus EPS]
          Length = 358

 Score = 42.4 bits (98), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 21/168 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           W+   AG+G T   + R LR    +    T +C+   + +          + +A+    D
Sbjct: 192 WIVVGAGTGGTSATIGRYLRYRCHD----TQVCVPDPEGS----------VFSAYHRTGD 237

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP--LEAN 152
             L+A  ++I+G    + + S  R L+  ++E P    V  +HA    + ++       N
Sbjct: 238 TTLTAVGSRIEGIGRPRVEPSFIRTLVDRMIEVPNLDSVAAMHALSALLGRKVGPSTGTN 297

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
                A+ADE ++       ++ ++ S++ D+ E    ++++   + N
Sbjct: 298 FIGMLAVADEMRAA-----GRQGSILSLLCDSGERYLPSYHDAAWVKN 340


>gi|237820788|ref|ZP_04596633.1| recombination helicase AddA [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1216

 Score = 42.4 bits (98), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|220903308|ref|YP_002478620.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867607|gb|ACL47942.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 1174

 Score = 42.4 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A  G+GKT +LV R+  LL     P  LL +T T+ AA EM  R   +  A  H+ D
Sbjct: 538 VQAGPGAGKTRVLVGRIQHLLDQGTAPHKLLAVTFTRRAANEMRQR---LAAALPHMQD 593


>gi|297564148|ref|YP_003683121.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296848597|gb|ADH70615.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
          Length = 781

 Score = 42.4 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)

Query: 20 TKSEQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68
          +  EQLL   + P R A         + A AGSGKT +L  R+  L+ A    P  +L +
Sbjct: 2  SSQEQLLEGLNGPQRDAVTHSGSPLLIVAGAGSGKTRVLTHRIAHLMAARGVRPGEILAI 61

Query: 69 THTKAAAAEMSHRVLEII 86
          T T  AAAEM  R+  ++
Sbjct: 62 TFTNKAAAEMRERIQALL 79


>gi|229817712|ref|ZP_04447994.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
           20098]
 gi|229785501|gb|EEP21615.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
           20098]
          Length = 889

 Score = 42.4 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 55  IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLTALI 106


>gi|217032458|ref|ZP_03437951.1| hypothetical protein HPB128_175g19 [Helicobacter pylori B128]
 gi|298736137|ref|YP_003728662.1| Rep helicase [Helicobacter pylori B8]
 gi|216945866|gb|EEC24486.1| hypothetical protein HPB128_175g19 [Helicobacter pylori B128]
 gi|298355326|emb|CBI66198.1| Rep helicase, single-stranded DNA-dependent ATPase (Rep)
          [Helicobacter pylori B8]
          Length = 675

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHL 92
          M  RV +   + S +
Sbjct: 66 MIARVAKYFKSSSKI 80


>gi|225861093|ref|YP_002742602.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230417|ref|ZP_06964098.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255440|ref|ZP_06979026.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502847|ref|YP_003724787.1| ATP-dependent deoxyribonuclease subunit A [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727192|gb|ACO23043.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238442|gb|ADI69573.1| ATP-dependent deoxyribonuclease, subunit A [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 1216

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|325300614|ref|YP_004260531.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
 gi|324320167|gb|ADY38058.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
          Length = 753

 Score = 42.4 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          ++ +D +++++ E +L  D    + V A AGSGKT +L  ++  LL     P ++L LT 
Sbjct: 2  ADFLDGLNESQREAVLYVDG--PSLVIAGAGSGKTRVLTYKIAYLLDQGYEPWSILALTF 59

Query: 71 TKAAAAEMSHRV 82
          T  AA EM  R+
Sbjct: 60 TNKAAREMKERI 71


>gi|307067686|ref|YP_003876652.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Streptococcus
           pneumoniae AP200]
 gi|306409223|gb|ADM84650.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Streptococcus
           pneumoniae AP200]
          Length = 1216

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|302340417|ref|YP_003805623.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637602|gb|ADK83029.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 1137

 Score = 42.4 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
          +Q  A+    SA VSA AGSGKT IL +R + L+    A    +L LT T+ AAAEM  R
Sbjct: 8  QQQEAAFTHHSAVVSAGAGSGKTTILSRRFVYLVETGRASVDEILTLTFTRKAAAEMYER 67

Query: 82 V 82
          +
Sbjct: 68 I 68


>gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300072560|gb|ADJ61959.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
          SmR1]
          Length = 759

 Score = 42.4 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          P +SA + A AGSGKT +L  R+  L+      PS +L +T T  AA EM+ R+
Sbjct: 19 PAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAAKEMTARL 72


>gi|289550376|ref|YP_003471280.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis
          HKU09-01]
 gi|289179908|gb|ADC87153.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis
          HKU09-01]
          Length = 746

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
          L++    EQ  A   T     + A AGSGKT +L  R+  LL      P  +L +T T  
Sbjct: 4  LVANMNDEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAKEMKQRVEQLV 76


>gi|254779514|ref|YP_003057620.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori
          B38]
 gi|254001426|emb|CAX29421.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori
          B38]
          Length = 675

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHL 92
          M  RV +   + S +
Sbjct: 66 MIARVAKYFKSSSKI 80


>gi|117927584|ref|YP_872135.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B]
 gi|117648047|gb|ABK52149.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B]
          Length = 763

 Score = 42.4 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L +R+  LL A    PS +L +T T  AA EM  R+
Sbjct: 41 VVAGAGSGKTRVLTRRIAYLLRARGVAPSEILAITFTNKAAGEMKRRL 88


>gi|262393458|ref|YP_003285312.1| exodeoxyribonuclease V subunit beta [Vibrio sp. Ex25]
 gi|262337052|gb|ACY50847.1| exodeoxyribonuclease V beta chain [Vibrio sp. Ex25]
          Length = 1224

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 35  IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 94

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A    SD ++   + +         D  +A  +L+          V TIH F
Sbjct: 95  IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 147

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 148 CQRMLTQNAFESG 160


>gi|229051608|ref|ZP_04195078.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
 gi|228721719|gb|EEL73193.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
          Length = 714

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           R     A AGSGKT +L  RV  L+ +A+   S +L LT T+ AA EM  R+
Sbjct: 90  RPVLAIAAAGSGKTRVLASRVGYLMCVAHVDASRILVLTFTRKAANEMKERI 141


>gi|148998405|ref|ZP_01825847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70]
 gi|168576141|ref|ZP_02722035.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|168577182|ref|ZP_02722997.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|168577235|ref|ZP_02723036.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|168577251|ref|ZP_02723047.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|194397993|ref|YP_002037761.1| exonuclease RexA [Streptococcus pneumoniae G54]
 gi|251764542|sp|B5E4P5|ADDA_STRP4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|147755802|gb|EDK62847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70]
 gi|183577186|gb|EDT97714.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|183577191|gb|EDT97719.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|183577238|gb|EDT97766.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|183577934|gb|EDT98462.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|194357660|gb|ACF56108.1| exonuclease RexA [Streptococcus pneumoniae G54]
          Length = 1216

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|229496641|ref|ZP_04390355.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC
          35406]
 gi|229316538|gb|EEN82457.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC
          35406]
          Length = 809

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          ++  ++E +L  D    A V A AGSGKT +L  ++  LL     P  L+ LT T  AA 
Sbjct: 8  LNPAQAEAVLYDDG--PALVIAGAGSGKTRVLTYKLAHLLEEGYDPHKLMALTFTNKAAR 65

Query: 77 EMSHRVLEIITA 88
          EM  RV  ++ +
Sbjct: 66 EMLSRVESMVGS 77


>gi|203288066|ref|YP_002223081.1| exodeoxyribonuclease V, beta chain [Borrelia recurrentis A1]
 gi|201085286|gb|ACH94860.1| exodeoxyribonuclease V, beta chain [Borrelia recurrentis A1]
          Length = 1147

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 23/127 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT+ L   +  LL    + P+ +L LT TK A  EM  R+L+ I    H+  
Sbjct: 16  IEASAGTGKTYTLEHIITNLLTTTMYTPNEILVLTFTKKATEEMHTRILKSI---EHIYQ 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               +K  +LL  I E    + + TI+ F    +  F +E    
Sbjct: 73  N-------------------AKTDNLLKNIYEQSNKIFISTINKFALYSLNNFQIETENF 113

Query: 155 SHFAIAD 161
           S + + +
Sbjct: 114 SKYTVKE 120


>gi|254370666|ref|ZP_04986671.1| conserved hypothetical protein [Francisella tularensis subsp.
          tularensis FSC033]
 gi|254874988|ref|ZP_05247698.1| uvrD/REP helicase family protein [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|151568909|gb|EDN34563.1| conserved hypothetical protein [Francisella tularensis subsp.
          tularensis FSC033]
 gi|254840987|gb|EET19423.1| uvrD/REP helicase family protein [Francisella tularensis subsp.
          tularensis MA00-2987]
          Length = 169

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++++  D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A  + + R+
Sbjct: 8  QKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMYNKSAQLDFATRL 67

Query: 83 LEIIT 87
           +++ 
Sbjct: 68 KKVLN 72


>gi|297622053|ref|YP_003710190.1| DNA helicase [Waddlia chondrophila WSU 86-1044]
 gi|297377354|gb|ADI39184.1| DNA helicase [Waddlia chondrophila WSU 86-1044]
          Length = 712

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
          V A AGSGKT ++  R+  L+ +    S +L LT T  AA EM  R+ +I  A SH+
Sbjct: 24 VLAGAGSGKTRVVTYRIAALIESGVPASQILGLTFTNKAAGEMQERIRKI--ANSHV 78


>gi|149006188|ref|ZP_01829900.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74]
 gi|307127336|ref|YP_003879367.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B]
 gi|147761965|gb|EDK68927.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74]
 gi|306484398|gb|ADM91267.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B]
 gi|332075086|gb|EGI85557.1| recombination helicase AddA [Streptococcus pneumoniae GA17545]
          Length = 1216

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|15639096|ref|NP_218542.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025336|ref|YP_001933108.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema
           pallidum subsp. pallidum SS14]
 gi|3322363|gb|AAC65097.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189017911|gb|ACD70529.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059520|gb|ADD72255.1| ATP-dependent helicase PcrA [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 657

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 39/149 (26%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT ++  R+  +L      S +L LT T  AA EMS R                
Sbjct: 24  AGAGSGKTRVITARIAYMLECGILQSRILALTFTNKAAHEMSER---------------- 67

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
              I  + GK    + +S                   T HAF   I+++         +F
Sbjct: 68  ---IKALTGKPLRNTTVS-------------------TFHAFGVTILREHIHVLGWRKNF 105

Query: 158 AIADEEQSKKLIEEAKKST-LASIMLDNN 185
           +I DE   + LI EA K   L   +LD N
Sbjct: 106 SIYDENDKRALIREAAKEVHLLPEVLDTN 134


>gi|86133361|ref|ZP_01051943.1| UvrD/REP helicase [Polaribacter sp. MED152]
 gi|85820224|gb|EAQ41371.1| UvrD/REP helicase [Polaribacter sp. MED152]
          Length = 774

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          +D +++ + + +L  D      + A AGSGKT +L  R+  L+ +      +L LT T  
Sbjct: 5  LDSLNEPQKQAVLQKDG--PMIIIAGAGSGKTRVLTYRIAHLMQSGVDAFNILSLTFTNK 62

Query: 74 AAAEMSHRVLEII 86
          AA EM  R+  ++
Sbjct: 63 AAREMKERIAGVV 75


>gi|311696294|gb|ADP99167.1| UvrD/REP helicase [marine bacterium HP15]
          Length = 721

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +LV R+  L+  +  P T +L +T T  AA EM +R+ +++
Sbjct: 27 VLAGAGSGKTRVLVHRIAWLMTVDRVPPTGILAVTFTNKAAKEMRYRIEQMM 78


>gi|224539562|ref|ZP_03680101.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518843|gb|EEF87948.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 667

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 41/148 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+         + D+
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERIAR------QVGDQ 79

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +ARHL +            T H+    I+         TS
Sbjct: 80  --------------------RARHLWMG-----------TFHSIFLRILHAEAANIGFTS 108

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLD 183
            F I D   SK L+    +S +  + LD
Sbjct: 109 QFTIYDTADSKSLV----RSIIKEMGLD 132


>gi|196047656|ref|ZP_03114862.1| ATP-dependent DNA helicase [Bacillus cereus 03BB108]
 gi|196021525|gb|EDX60226.1| ATP-dependent DNA helicase [Bacillus cereus 03BB108]
          Length = 263

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|254229524|ref|ZP_04922938.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25]
 gi|151937989|gb|EDN56833.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25]
          Length = 1227

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 38  IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A    SD ++   + +         D  +A  +L+          V TIH F
Sbjct: 98  IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 151 CQRMLTQNAFESG 163


>gi|222086413|ref|YP_002544947.1| DNA helicase II protein [Agrobacterium radiobacter K84]
 gi|221723861|gb|ACM27017.1| DNA helicase II protein [Agrobacterium radiobacter K84]
          Length = 828

 Score = 42.4 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L  N A PS +L +T T  AA EM  RV
Sbjct: 73  VLAGAGTGKTRVLTTRIAHILSTNRAFPSQILAVTFTNKAAREMKERV 120


>gi|260584785|ref|ZP_05852530.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC
          700633]
 gi|260157442|gb|EEW92513.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC
          700633]
          Length = 755

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  +L     HP  +L +T T  AA EM  RV +++
Sbjct: 18 IMAGAGSGKTRVLTHRMAYILAEEEVHPWNILAITFTNKAAREMKERVSQLV 69


>gi|149198591|ref|ZP_01875635.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
 gi|149138306|gb|EDM26715.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
          Length = 645

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKTH L  RV +L+ +      +L LT T+ AA EM  R+
Sbjct: 22 AGAGTGKTHTLCCRVAKLIQSGVPAHKILMLTFTRKAAEEMKQRI 66


>gi|258545084|ref|ZP_05705318.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826]
 gi|258519661|gb|EEV88520.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826]
          Length = 1287

 Score = 42.4 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 44/200 (22%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV---------- 82
           A + A+AG+GKT  L   +LRLL+   + P  ++  T T+ AAAEM  RV          
Sbjct: 19  ALIEASAGTGKTWTLTGIILRLLIEGGYPPREIIATTFTRKAAAEMQQRVHKRLHALREN 78

Query: 83  LEIITAWSHLSDEI-------LSAEITKIQGKKPNKSDMSKARHLLITILETPG------ 129
           L+ I A  +L++E        L+  +  I G   +  D+   RHL++  +   G      
Sbjct: 79  LKAIAA-RYLAEETVLNDDDGLATRLDDIIGG--SGGDLIN-RHLILNAVAKHGLDGLIA 134

Query: 130 -------------GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                         L + TI + C+  + +F LE        I    ++   +EE    T
Sbjct: 135 IFSRVESLQARLDELFIGTIDSLCQRWLAEFALETGNDERLQI---NENSPALEETIHDT 191

Query: 177 LASIMLDNNEELKKAFYEIL 196
           L  ++ +N++   + F ++L
Sbjct: 192 LRRLLHENHQHDPETFAQML 211


>gi|254682605|ref|ZP_05146466.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. CNEVA-9066]
          Length = 280

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115


>gi|251809891|ref|ZP_04824364.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|282874545|ref|ZP_06283430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          SK135]
 gi|251806556|gb|EES59213.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|281296684|gb|EFA89193.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          SK135]
          Length = 729

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+    SEQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM+ RV
Sbjct: 64 AAKEMNARV 72


>gi|255726244|ref|XP_002548048.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240133972|gb|EER33527.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 935

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
          A  G+GKT +LV RV  LL+ +   P  ++  T TK AA EM+ R+  ++   +   D++
Sbjct: 36 AGPGTGKTKVLVSRVAHLLIVDKVRPDNMIVTTFTKKAANEMTDRLHRLLAGTNISVDKL 95

Query: 97 L 97
          +
Sbjct: 96 I 96


>gi|229125267|ref|ZP_04254369.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
 gi|228658193|gb|EEL13931.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
          Length = 714

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           R     A AGSGKT +L  RV  L+ +A+   S +L LT T+ AA EM  R+
Sbjct: 90  RPVLAIAAAGSGKTRVLASRVGYLMCVAHVDASRILVLTFTRKAANEMKERI 141


>gi|222151885|ref|YP_002561045.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402]
 gi|222121014|dbj|BAH18349.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402]
          Length = 721

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
          + A AGSGKT +L  R+  L+   +  P  +L +T T  AA EM  RV +II   S +
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKDVSPYKILAITFTNKAAKEMKERVKKIIGDESDV 82


>gi|28899148|ref|NP_798753.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260364728|ref|ZP_05777315.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           K5030]
 gi|260876768|ref|ZP_05889123.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260898155|ref|ZP_05906651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28807372|dbj|BAC60637.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308089095|gb|EFO38790.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091467|gb|EFO41162.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308115342|gb|EFO52882.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           K5030]
          Length = 1227

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 38  IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A    SD ++   + +         D  +A  +L+          V TIH F
Sbjct: 98  IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 151 CQRMLTQNAFESG 163


>gi|254702135|ref|ZP_05163963.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 5 str. 513]
 gi|261752704|ref|ZP_05996413.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513]
 gi|261742457|gb|EEY30383.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|257793016|ref|YP_003186415.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479708|gb|ACV60026.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 706

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           T+D ++  + E   A+       V A AGSGKT +L+ R+  L+     P  +L  T T+
Sbjct: 120 TLDQLNDAQREA--ATHKNGPCMVVAAAGSGKTAMLIARIQHLINQGVRPGDILACTFTR 177

Query: 73  AAAAEMSHRVLEII 86
            AA EM+ R+L  +
Sbjct: 178 KAAQEMTDRLLAAV 191


>gi|203284532|ref|YP_002222272.1| exodeoxyribonuclease V, beta chain [Borrelia duttonii Ly]
 gi|201083975|gb|ACH93566.1| exodeoxyribonuclease V, beta chain [Borrelia duttonii Ly]
          Length = 1147

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 23/127 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT+ L   +  LL    + P+ +L LT TK A  EM  R+L+ I    H+  
Sbjct: 16  IEASAGTGKTYTLEHIITNLLTTTMYTPNEILVLTFTKKATEEMHTRILKSI---EHIYQ 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               +K  +LL  I E    + + TI+ F    +  F +E    
Sbjct: 73  N-------------------AKTDNLLKNIYEQSNKIFISTINKFALYSLNNFQIETENF 113

Query: 155 SHFAIAD 161
           S + + +
Sbjct: 114 SKYTVKE 120


>gi|296188218|ref|ZP_06856610.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7]
 gi|296047344|gb|EFG86786.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7]
          Length = 1243

 Score = 42.4 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 32/174 (18%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LV+R+++ +  N        LL +T T AAA+EM  R+                  
Sbjct: 30  KTAVLVERIIQKITDNEDDVDVDKLLVVTFTNAAASEMRERI---------------GDA 74

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           I+K     P   ++ K   LL           + TIH+FC  +++      ++  +F + 
Sbjct: 75  ISKKLEVMPESKNLQKQLMLL-------NKSNIMTIHSFCLQVIKNNFHIIDLDPNFRVC 127

Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI---SNDEDIETLISDI 211
           DE +S  L    K+ T+  +  D  E+  + F ++++     ND  +E +I D+
Sbjct: 128 DETESILL----KQETIDEVFEDKYEQSDEGFIQLVKCYGGKNDFKVENMILDL 177


>gi|291525748|emb|CBK91335.1| Superfamily I DNA and RNA helicases [Eubacterium rectale DSM 17629]
          Length = 763

 Score = 42.4 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 79/195 (40%), Gaps = 45/195 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D++++ + E +L +D      + A AGSGKT +L  R   L+     +P  ++ +T T 
Sbjct: 3   LDMLNEQQREAVLTTDG--PLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++   S                                        + 
Sbjct: 61  KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I++++       ++F I D +  K L+++  K     + +D     +K F
Sbjct: 83  VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICK----RLEIDTKMYKEKMF 138

Query: 193 YEILEISNDEDIETL 207
             ++  + DE I+ +
Sbjct: 139 LNVISSAKDEMIDPI 153


>gi|260914154|ref|ZP_05920627.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
 gi|260631787|gb|EEX49965.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
          Length = 725

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 37/154 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           SE +D ++  + + + A  P  +  V A AGSGKT +L  R+  L+        +++ +T
Sbjct: 4   SELLDGLNDKQRKAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEGISEGSIMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM HR+   +   +H S  +                                 
Sbjct: 62  FTNKAAAEMRHRIESTLA--NHSSQRLF-------------------------------- 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           G+ V T H+    +++   L+AN+   F I D +
Sbjct: 88  GMWVGTFHSIAHRLLRAHHLDANLPQDFQILDSD 121


>gi|255523282|ref|ZP_05390252.1| recombination helicase AddA [Clostridium carboxidivorans P7]
 gi|255512936|gb|EET89206.1| recombination helicase AddA [Clostridium carboxidivorans P7]
          Length = 1226

 Score = 42.4 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 32/174 (18%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LV+R+++ +  N        LL +T T AAA+EM  R+                  
Sbjct: 30  KTAVLVERIIQKITDNEDDVDVDKLLVVTFTNAAASEMRERI---------------GDA 74

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           I+K     P   ++ K   LL           + TIH+FC  +++      ++  +F + 
Sbjct: 75  ISKKLEVMPESKNLQKQLMLL-------NKSNIMTIHSFCLQVIKNNFHIIDLDPNFRVC 127

Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI---SNDEDIETLISDI 211
           DE +S  L    K+ T+  +  D  E+  + F ++++     ND  +E +I D+
Sbjct: 128 DETESILL----KQETIDEVFEDKYEQSDEGFIQLVKCYGGKNDFKVENMILDL 177


>gi|210135102|ref|YP_002301541.1| Rep helicase [Helicobacter pylori P12]
 gi|210133070|gb|ACJ08061.1| Rep helicase [Helicobacter pylori P12]
          Length = 675

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+  ++    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHL 92
          M  RV +   + S +
Sbjct: 66 MIARVAKYFKSSSKI 80


>gi|158521072|ref|YP_001528942.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans
           Hxd3]
 gi|158509898|gb|ABW66865.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans
           Hxd3]
          Length = 1203

 Score = 42.4 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93
           V A+AG+GKT+ +V   LRL+   +A    +L +T+T+AA  E+  ++   +  A +   
Sbjct: 22  VEASAGTGKTYAIVGLFLRLIAETDAGVDNILAVTYTEAATQELKGKIRTALRKAATAFK 81

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
              +S +       K  ++  + A   L   LE      + TIH FC  ++ +F  E+ +
Sbjct: 82  TGTMSGDPLIDGLLKKRETTRAVAARRLKRALEAFDQAAIFTIHGFCSRMLGEFAFESGV 141


>gi|89897835|ref|YP_514945.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56]
 gi|89331207|dbj|BAE80800.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56]
          Length = 636

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          P     V A AG+GKT ++  R+L L+     P  +L +T T  AA E+  R+L
Sbjct: 17 PLSPVLVLAGAGAGKTRVVTCRILHLIKEGIAPREILAVTFTNKAAKELKERIL 70


>gi|319788731|ref|YP_004090046.1| UvrD/REP helicase [Ruminococcus albus 7]
 gi|315450598|gb|ADU24160.1| UvrD/REP helicase [Ruminococcus albus 7]
          Length = 1231

 Score = 42.4 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPST-LLCLTHTKA 73
          +S T+ +Q       R   VSA AGSGKT +L++R++RLL     A P+  LL +T T  
Sbjct: 3  VSWTEDQQKAIDSYGRGVTVSAAAGSGKTAVLIERIIRLLTDKEKAIPADRLLAVTFTID 62

Query: 74 AAAEMSHRV 82
          AAA+M  ++
Sbjct: 63 AAAQMRDKL 71


>gi|184200505|ref|YP_001854712.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201]
 gi|183580735|dbj|BAG29206.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201]
          Length = 1145

 Score = 42.4 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 23/168 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63
           S Q+ +E +     T+ +  + + P     V A AGSGKT  +  RV   L+AN  A P 
Sbjct: 14  SPQDIAEALGDFPPTEQQAEVIASPLTPRLVVAGAGSGKTTTMSDRV-TWLVANGLARPE 72

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T+ AA E+S R+   +    H               ++P   D + A      
Sbjct: 73  EILGVTFTRKAAGELSQRIATKLRMLRHAG-----------LIEEPGGDDDAPA------ 115

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            ++ P    V T H++  ++++ + L   I S   +  + Q+ +L  E
Sbjct: 116 AVQEP---TVSTYHSYANSLVRSYGLRLGIESDTVLLGQAQAWQLASE 160


>gi|253701545|ref|YP_003022734.1| UvrD/REP helicase [Geobacter sp. M21]
 gi|251776395|gb|ACT18976.1| UvrD/REP helicase [Geobacter sp. M21]
          Length = 678

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
          +S+   EQL A   T     V A AGSGKT ++  R+  L+L     P  +L +T T  A
Sbjct: 4  LSRLNPEQLAAVKHTEGPLLVLAGAGSGKTGVITYRIAHLVLDKKVPPDQILAVTFTNKA 63

Query: 75 AAEMSHRV 82
          A EM  RV
Sbjct: 64 AKEMKERV 71


>gi|308804119|ref|XP_003079372.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri]
 gi|116057827|emb|CAL54030.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri]
          Length = 859

 Score = 42.4 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A  GSGKTH+L+ RV  L+      P  +LC+T T  AA E+  R+ + I  
Sbjct: 84  PVGATRVLAGPGSGKTHVLIGRVAHLIHEEKTPPREILCITFTNKAAKELRERLRDKI-- 141

Query: 89  WSHLSDEILSAEIT 102
                 E+ + EIT
Sbjct: 142 -----GEVAAKEIT 150


>gi|255535683|ref|YP_003096054.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium
          3519-10]
 gi|255341879|gb|ACU07992.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium
          3519-10]
          Length = 775

 Score = 42.4 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     P  +L LT T  AA EM  R+ +++
Sbjct: 24 VLAGAGSGKTRVLTMRIAHLITNLVDPFNILALTFTNKAAKEMKERIAKVV 74


>gi|149004237|ref|ZP_01829024.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69]
 gi|147757787|gb|EDK64800.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69]
          Length = 1421

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 250 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 309

Query: 96  I 96
           +
Sbjct: 310 V 310


>gi|221068754|ref|ZP_03544859.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
 gi|220713777|gb|EED69145.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
          Length = 827

 Score = 42.4 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++    EQL A + P   A + A AGSGKT +L  R+  LL    A P +++ +T T  
Sbjct: 26 LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 86 AAKEMLTRL 94


>gi|91223408|ref|ZP_01258673.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus
           12G01]
 gi|91191494|gb|EAS77758.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus
           12G01]
          Length = 1227

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 38  IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A    SD ++   + +         D  +A  +L+          V TIH F
Sbjct: 98  IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 151 CQRMLTQNAFESG 163


>gi|306820669|ref|ZP_07454297.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304551279|gb|EFM39242.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 729

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT ++  ++  L+   N +P  +L +T T  AA EM  RV E+I
Sbjct: 29 AGAGSGKTRVITNKIAYLIEEKNVNPYNILAITFTNKAAKEMLSRVEEMI 78


>gi|328474312|gb|EGF45117.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus
           10329]
          Length = 1227

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 38  IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A    SD ++   + +         D  +A  +L+          V TIH F
Sbjct: 98  IHDARIAFARGRSSDPVIQPLLNEF-------DDHKQAAEVLLQAERQMDEAAVYTIHGF 150

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 151 CQRMLTQNAFESG 163


>gi|306843240|ref|ZP_07475850.1| DNA helicase II [Brucella sp. BO2]
 gi|306286563|gb|EFM58142.1| DNA helicase II [Brucella sp. BO2]
          Length = 863

 Score = 42.4 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|225627865|ref|ZP_03785902.1| DNA helicase II [Brucella ceti str. Cudo]
 gi|254710455|ref|ZP_05172266.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis B2/94]
 gi|254714448|ref|ZP_05176259.1| ATP-dependent DNA helicase pcrA [Brucella ceti M644/93/1]
 gi|254717346|ref|ZP_05179157.1| ATP-dependent DNA helicase pcrA [Brucella ceti M13/05/1]
 gi|256031949|ref|ZP_05445563.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis M292/94/1]
 gi|256061471|ref|ZP_05451615.1| ATP-dependent DNA helicase pcrA [Brucella neotomae 5K33]
 gi|256160148|ref|ZP_05457842.1| ATP-dependent DNA helicase pcrA [Brucella ceti M490/95/1]
 gi|256255354|ref|ZP_05460890.1| ATP-dependent DNA helicase pcrA [Brucella ceti B1/94]
 gi|260169086|ref|ZP_05755897.1| ATP-dependent DNA helicase pcrA [Brucella sp. F5/99]
 gi|261219176|ref|ZP_05933457.1| UvrD/REP helicase [Brucella ceti M13/05/1]
 gi|261222555|ref|ZP_05936836.1| UvrD/REP helicase [Brucella ceti B1/94]
 gi|261318026|ref|ZP_05957223.1| UvrD/REP helicase [Brucella pinnipedialis B2/94]
 gi|261322237|ref|ZP_05961434.1| UvrD/REP helicase [Brucella ceti M644/93/1]
 gi|261325477|ref|ZP_05964674.1| UvrD/REP helicase [Brucella neotomae 5K33]
 gi|261758591|ref|ZP_06002300.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|265989057|ref|ZP_06101614.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1]
 gi|265998520|ref|ZP_06111077.1| UvrD/REP helicase [Brucella ceti M490/95/1]
 gi|294852740|ref|ZP_06793413.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL
           07-0026]
 gi|225617870|gb|EEH14915.1| DNA helicase II [Brucella ceti str. Cudo]
 gi|260921139|gb|EEX87792.1| UvrD/REP helicase [Brucella ceti B1/94]
 gi|260924265|gb|EEX90833.1| UvrD/REP helicase [Brucella ceti M13/05/1]
 gi|261294927|gb|EEX98423.1| UvrD/REP helicase [Brucella ceti M644/93/1]
 gi|261297249|gb|EEY00746.1| UvrD/REP helicase [Brucella pinnipedialis B2/94]
 gi|261301457|gb|EEY04954.1| UvrD/REP helicase [Brucella neotomae 5K33]
 gi|261738575|gb|EEY26571.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|262553144|gb|EEZ08978.1| UvrD/REP helicase [Brucella ceti M490/95/1]
 gi|264661254|gb|EEZ31515.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1]
 gi|294821329|gb|EFG38328.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL
           07-0026]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|157163928|ref|YP_001466843.1| putative site-specific DNA methyltransferase [Campylobacter
          concisus 13826]
 gi|112801282|gb|EAT98626.1| UvrD/REP helicase [Campylobacter concisus 13826]
          Length = 677

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           K +   A+ P     + A+AG+GKT  +V R+  LL     P  +L LT T  AA+EM 
Sbjct: 7  NKEQYTAATAPFGHNLIIASAGTGKTSTIVARIAHLLNLGVAPEKILLLTFTNKAASEMI 66

Query: 80 HRV 82
           R+
Sbjct: 67 ERL 69


>gi|312891088|ref|ZP_07750611.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
 gi|311296396|gb|EFQ73542.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
          Length = 1053

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 3  YHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANA 60
          Y+  FQE       ++    +QL A +       V A  G+GKT IL  R+ ++L   +A
Sbjct: 8  YNAKFQE------ALNNLNPQQLAAVNKMDGPVLVIAGPGTGKTQILAARIGKILTETDA 61

Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEII 86
           P  +LCLT+T A A  M  R+ + I
Sbjct: 62 LPHEILCLTYTDAGAVAMRKRLFDFI 87


>gi|291295604|ref|YP_003507002.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290470563|gb|ADD27982.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 706

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A V A AGSGKT  +V R+  LL     +P+ +L +T T  AA EM  R+ +++
Sbjct: 22 PALVVAGAGSGKTRTVVHRIAYLLRERRVYPAEILAVTFTNKAAGEMKERLEKMV 76


>gi|281358424|ref|ZP_06244905.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548]
 gi|281315047|gb|EFA99079.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548]
          Length = 679

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 38/162 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E  +++ Q   EQ  A+        V A AG+GKT ++  R+  +L     P  +L +T 
Sbjct: 2   EKDEILKQLNPEQASAAGTVNGPVLVLAGAGTGKTRVITFRIAYMLACGIPPQMILGMTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ +++          ++ ++T                            
Sbjct: 62  TNKAAREMRERLAQLVQPQ-------IARKVT---------------------------- 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
             + T H+FC  I+++   +      F IADE   + ++++A
Sbjct: 87  --LGTFHSFCIKILRRDIAKLGYLPSFTIADESDQQGVLKQA 126


>gi|23502284|ref|NP_698411.1| DNA helicase II [Brucella suis 1330]
 gi|161619361|ref|YP_001593248.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365]
 gi|254704671|ref|ZP_05166499.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 3 str. 686]
 gi|260566081|ref|ZP_05836551.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|261755364|ref|ZP_05999073.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686]
 gi|23348259|gb|AAN30326.1| DNA helicase II [Brucella suis 1330]
 gi|161336172|gb|ABX62477.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365]
 gi|260155599|gb|EEW90679.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|261745117|gb|EEY33043.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895704|gb|EFG75400.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 777

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 38  IVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFTNKAAAEMRERVVRLVG------- 90

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                               ++AR            + V T H+ C  I++ Q  L   +
Sbjct: 91  --------------------NRAR-----------AMWVSTFHSTCVRILRNQAALIEGL 119

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 120 NSNFSIYDADDSRRLLQ 136


>gi|254719445|ref|ZP_05181256.1| ATP-dependent DNA helicase pcrA [Brucella sp. 83/13]
 gi|265984450|ref|ZP_06097185.1| UvrD/REP helicase [Brucella sp. 83/13]
 gi|306839222|ref|ZP_07472039.1| DNA helicase II [Brucella sp. NF 2653]
 gi|264663042|gb|EEZ33303.1| UvrD/REP helicase [Brucella sp. 83/13]
 gi|306405769|gb|EFM62031.1| DNA helicase II [Brucella sp. NF 2653]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|254689608|ref|ZP_05152862.1| DNA helicase II [Brucella abortus bv. 6 str. 870]
 gi|254694098|ref|ZP_05155926.1| DNA helicase II [Brucella abortus bv. 3 str. Tulya]
 gi|256257857|ref|ZP_05463393.1| DNA helicase II [Brucella abortus bv. 9 str. C68]
 gi|260755135|ref|ZP_05867483.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|260884147|ref|ZP_05895761.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|261214396|ref|ZP_05928677.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya]
 gi|297248693|ref|ZP_06932411.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus
           bv. 5 str. B3196]
 gi|260675243|gb|EEX62064.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|260873675|gb|EEX80744.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|260916003|gb|EEX82864.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya]
 gi|297175862|gb|EFH35209.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus
           bv. 5 str. B3196]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|163843668|ref|YP_001628072.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445]
 gi|163674391|gb|ABY38502.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|149376496|ref|ZP_01894257.1| DNA-dependent helicase II [Marinobacter algicola DG893]
 gi|149359163|gb|EDM47626.1| DNA-dependent helicase II [Marinobacter algicola DG893]
          Length = 721

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLT 69
          S  ID ++  + E + A +      V A AGSGKT +LV R+  L+  +  P T +L +T
Sbjct: 4  SHIIDALNDAQREAVTAQND--HLLVLAGAGSGKTRVLVHRIAWLMQVDKVPPTGILAVT 61

Query: 70 HTKAAAAEMSHRVLEII 86
           T  AA EM +R+ +++
Sbjct: 62 FTNKAAKEMRYRIEQMM 78


>gi|148558984|ref|YP_001259307.1| DNA helicase II [Brucella ovis ATCC 25840]
 gi|148370241|gb|ABQ60220.1| DNA helicase II [Brucella ovis ATCC 25840]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|82701697|ref|YP_411263.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196]
 gi|82409762|gb|ABB73871.1| ATP-dependent DNA helicase UvrD [Nitrosospira multiformis ATCC
          25196]
          Length = 743

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
          L++    EQL A + P +SA V A AGSGKT +L  R+  L+ +    P  +L +T T  
Sbjct: 4  LLTALNPEQLEAVTLPHQSALVLAGAGSGKTKVLTTRIAYLIQSGEVSPHGILAVTFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  R+  ++
Sbjct: 64 AAKEMLTRIAAML 76


>gi|62290306|ref|YP_222099.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941]
 gi|82700230|ref|YP_414804.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024540|ref|YP_001935308.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237815813|ref|ZP_04594810.1| DNA helicase II [Brucella abortus str. 2308 A]
 gi|254730639|ref|ZP_05189217.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|260546849|ref|ZP_05822588.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260758354|ref|ZP_05870702.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|62196438|gb|AAX74738.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941]
 gi|82616331|emb|CAJ11388.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella
           melitensis biovar Abortus 2308]
 gi|189020112|gb|ACD72834.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237789111|gb|EEP63322.1| DNA helicase II [Brucella abortus str. 2308 A]
 gi|260095899|gb|EEW79776.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260668672|gb|EEX55612.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|33861659|ref|NP_893220.1| UvrD/REP helicase subunit B [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640027|emb|CAE19562.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 1209

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GK+  L   VLR +L     S  +L L+ TK    E+  ++L           
Sbjct: 15  IEASAGTGKSFTLAHLVLRNVLEKKIKSEEILLLSFTKNTCTELRDKILSRFCKLKLFLQ 74

Query: 95  EILSAEI--TKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQFPL 149
                E+  T ++  K  + + +  + ++  I   + T   LKV T HAFC  I+++F +
Sbjct: 75  NPEETELDNTLLEWYKNFQKEETNPKKIIFDIDNFINTIYKLKVTTFHAFCNNILEEFSI 134

Query: 150 E 150
           +
Sbjct: 135 D 135


>gi|134300187|ref|YP_001113683.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1]
 gi|134052887|gb|ABO50858.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1]
          Length = 730

 Score = 42.4 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          ++++SQ    Q  A   T     V A AGSGKT +L  R+ ++L     P  +L +T T 
Sbjct: 1  MNILSQLNPAQEEAVQHTEGPLLVLAGAGSGKTRVLTHRIAQILSQGVRPYNILAITFTN 60

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  ++
Sbjct: 61 KAANEMRARVENLV 74


>gi|317012720|gb|ADU83328.1| Rep helicase [Helicobacter pylori Lithuania75]
          Length = 675

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+  ++    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHL 92
          M  RV +   + S +
Sbjct: 66 MIARVAKYFKSSSKI 80


>gi|264677052|ref|YP_003276958.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
 gi|262207564|gb|ACY31662.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
          Length = 827

 Score = 42.4 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++    EQL A + P   A + A AGSGKT +L  R+  LL    A P +++ +T T  
Sbjct: 26 LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 86 AAKEMLTRL 94


>gi|163753956|ref|ZP_02161079.1| UvrD/REP helicase [Kordia algicida OT-1]
 gi|161326170|gb|EDP97496.1| UvrD/REP helicase [Kordia algicida OT-1]
          Length = 969

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          + S+    Q LA D T     + A  G+GKT  LV+R + L+     P  +L  T T+ A
Sbjct: 1  MTSRNNPYQQLAIDTTEGPVLIIAGPGAGKTRTLVERTVNLIQKGTKPEEILVATFTEKA 60

Query: 75 AAEM----SHRVLEI 85
          A E+    S+R+LE+
Sbjct: 61 AKELVTRISNRLLEL 75


>gi|86739360|ref|YP_479760.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3]
 gi|86566222|gb|ABD10031.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3]
          Length = 838

 Score = 42.4 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  R+  LL A    P  +L +T T  AA EM  RV  ++
Sbjct: 82  VVAGAGSGKTRVLTHRIAYLLAARGVRPGEMLAITFTNKAANEMRERVSALV 133


>gi|41406991|ref|NP_959827.1| hypothetical protein MAP0893 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395342|gb|AAS03210.1| UvrD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 774

 Score = 42.4 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +RV  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 38  IVAGAGSGKTAVLTRRVAYLIAARGVGVGQVLAITFTNKAAAEMRERVVRLVG------- 90

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                               ++AR            + V T H+ C  I++ Q  L   +
Sbjct: 91  --------------------NRAR-----------AMWVSTFHSTCVRILRNQASLIEGL 119

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 120 NSNFSIYDADDSRRLLQ 136


>gi|87121050|ref|ZP_01076941.1| DNA helicase II [Marinomonas sp. MED121]
 gi|86163542|gb|EAQ64816.1| DNA helicase II [Marinomonas sp. MED121]
          Length = 735

 Score = 42.4 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +D ++  + E + A  P ++  + A AGSGKT +LV R+  L+ A    P +++ +T T 
Sbjct: 7  LDSLNDKQREAVAA--PLQNTLILAGAGSGKTRVLVHRIAWLMHAYEVSPFSIMAVTFTN 64

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+ +++
Sbjct: 65 KAAKEMQARIEQLV 78


>gi|329767008|ref|ZP_08258536.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341]
 gi|328837733|gb|EGF87358.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341]
          Length = 728

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
          ++ +      QL A   T  A  V A AGSGKT +L  R+  L+   N   S +L +T T
Sbjct: 1  MNFVQNMNDNQLKAILKTDGAVMVIAGAGSGKTRVLTNRIAYLIAEKNVLESNILAITFT 60

Query: 72 KAAAAEMSHRVLEIITAWS 90
            AA EM  R+  ++   S
Sbjct: 61 NKAAKEMKERIYALVGETS 79


>gi|254516482|ref|ZP_05128541.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3]
 gi|219674905|gb|EED31272.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3]
          Length = 1055

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 31/146 (21%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           ++SA AGSGKT+ L Q++ +LL +    P+ ++  T TK AA E+  RV   +       
Sbjct: 11  FISAGAGSGKTYSLTQKLEQLLSSQEVSPAGVIATTFTKLAAGELKERVRSKLIE----- 65

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                       G+    + M +A               + T++  C  ++++F  EA++
Sbjct: 66  -----------SGQLGVANQMEQAL--------------IGTVNGVCGDLLRRFAFEAHM 100

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLAS 179
                + DE Q   L  +A +  LA+
Sbjct: 101 PPDQLVLDEAQGDLLFYQAIEHALAT 126


>gi|91203329|emb|CAJ72968.1| strongly similar to ATP-dependent DNA helicase [Candidatus
          Kuenenia stuttgartiensis]
          Length = 729

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT ++ +R+  L+     P  +L +T T  AA EM+ RV
Sbjct: 24 IVAGAGSGKTRVITRRIGYLMSEGISPYNILAITFTNKAANEMAERV 70


>gi|113477645|ref|YP_723706.1| ATP-dependent DNA helicase Rep [Trichodesmium erythraeum IMS101]
 gi|110168693|gb|ABG53233.1| ATP-dependent DNA helicase, Rep family [Trichodesmium erythraeum
           IMS101]
          Length = 781

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  RV+ L+  +  HP  +L +T T  AA EM  R+           +
Sbjct: 27  VVAGAGSGKTRALTYRVVHLIRHHRVHPENILAVTFTNKAAQEMKDRI-----------E 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQTIHAFCEAIMQ------Q 146
           ++ + E  + +  KP  +  S+ +  L + +       L V T H  C  I++      Q
Sbjct: 76  KVFAQEQAEAKYNKPFSALTSEEQIRLRSQVYKNITKHLWVGTFHNLCARILRFDINKYQ 135

Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171
              + +   +F+I DE  ++ LI++
Sbjct: 136 DEKKRHWDKNFSIFDESDAQSLIKQ 160


>gi|332184470|gb|AEE26724.1| Exodeoxyribonuclease V beta chain [Francisella cf. novicida 3523]
          Length = 1197

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 16/119 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT  + +  +RLL+     P+ +L +T TK A  E+  R       VLE I+
Sbjct: 17  IEASAGTGKTFNITELYIRLLVEKKLLPNQILVMTFTKDATQEIIGRVEAKIRDVLEDIS 76

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
               +   I   E T IQ    N       +HL  ++LE      + TIH FC+ ++ +
Sbjct: 77  EGKEVKVSIKGQE-TLIQKGDEN------YKHLKRSLLEIDEAA-IFTIHGFCKKVLSE 127


>gi|330995679|ref|ZP_08319577.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329574738|gb|EGG56299.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 1082

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93
           A+AGSGKT  L  + ++ L+        S +L +T T  A  EM  R+L+ +   W  L 
Sbjct: 10  ASAGSGKTFTLAIQYIKTLIEQESRHAYSHILAVTFTNKATTEMKDRILQQLYGIWKGLP 69

Query: 94  D-----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E L  E+     + P +   S+A   L  IL      +V+TI +F +++++   
Sbjct: 70  SSTNYLESLQKELRADSIELPEEEIRSRAGAALCHILHDYNRFRVETIDSFFQSVLKNLA 129

Query: 149 LEANITSHFAI 159
            E ++T++  +
Sbjct: 130 HELSLTANLKV 140


>gi|330815075|ref|YP_004358780.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
 gi|327367468|gb|AEA58824.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
          Length = 694

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+      P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +++E   +T
Sbjct: 117 PQFSIMDSDDCFGMVQEQMGTT 138


>gi|331694962|ref|YP_004331201.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949651|gb|AEA23348.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 1224

 Score = 42.4 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
          T+ +  + + P+R A V A AG+GKT  +  RV+ L+      P  +L LT T+ AA ++
Sbjct: 18 TEEQAAVIAAPSRPALVVAGAGAGKTETMAARVVWLVATGQVLPEQVLGLTFTRKAAQQL 77

Query: 79 SHRV 82
            RV
Sbjct: 78 GQRV 81


>gi|317178737|dbj|BAJ56525.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori F30]
          Length = 676

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRV 82
          M  RV
Sbjct: 66 MIARV 70


>gi|308184696|ref|YP_003928829.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Helicobacter pylori SJM180]
 gi|308060616|gb|ADO02512.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Helicobacter pylori SJM180]
          Length = 675

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    + A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHLSDEI 96
          M  RV      +S LS +I
Sbjct: 66 MIARV----AKYSKLSSKI 80


>gi|254697750|ref|ZP_05159578.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260762180|ref|ZP_05874523.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260672612|gb|EEX59433.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 853

 Score = 42.4 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|251792613|ref|YP_003007339.1| exodeoxyribonuclease V subunit beta [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534006|gb|ACS97252.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 1220

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL    NA P  L     L +T T+ A  E+  ++ E I 
Sbjct: 17  IEASAGTGKTYTMGSLYLRLLLQAGKNAFPYALNVEQILVVTFTEMATEELKKKIRERIY 76

Query: 88  -------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                   +    D     +   ++G     +D+  A   L    +      + TIH FC
Sbjct: 77  DAKQKVIVYQQTRDLCAFEQDDFLRGLAETITDLPLAIQRLTLAEQNMDLAAIYTIHGFC 136

Query: 141 EAIMQQFPLEANITSHFAIADEE 163
             ++ Q+   + I  +  ++ EE
Sbjct: 137 RRMLVQYAFNSGIHFNLELSGEE 159


>gi|163868698|ref|YP_001609910.1| DNA helicase II [Bartonella tribocorum CIP 105476]
 gi|161018357|emb|CAK01915.1| DNA helicase II [Bartonella tribocorum CIP 105476]
          Length = 787

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           ++ S   D + Q   EQ  A   T     V A AG+GKT +L  R+  +L +  A P  +
Sbjct: 42  EKKSYNTDYLGQLNPEQQQAVINTEGPLLVLAGAGTGKTRVLTTRISHILRSGLASPQQI 101

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+ E+I
Sbjct: 102 LAVTFTNKAAREMKIRIGELI 122


>gi|85859318|ref|YP_461520.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
 gi|85722409|gb|ABC77352.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
          Length = 657

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT  L  RV RL+     P  +L  T T  AA  M +RV E++
Sbjct: 25 VLAGAGSGKTRTLTYRVARLVETGIKPERILLATFTNKAARSMLNRVRELV 75


>gi|317498206|ref|ZP_07956507.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894561|gb|EFV16742.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 655

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L+ Q    QL A   T     V A AGSGKT  L  R   L+      P  +LC+T T  
Sbjct: 32  LLCQLNQAQLEAVTSTEGFIRVIAGAGSGKTRALSHRFAFLVNEIGILPGNILCVTFTNK 91

Query: 74  AAAEMSHRVLEII 86
           AA EM HR+  +I
Sbjct: 92  AANEMRHRIHNLI 104


>gi|265753474|ref|ZP_06088829.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235188|gb|EEZ20712.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 796

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          V A AGSGKT +L  ++  LL     P ++L LT T  AA EM  R++
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNKAAREMKERIV 72


>gi|258514071|ref|YP_003190293.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM
          771]
 gi|257777776|gb|ACV61670.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM
          771]
          Length = 737

 Score = 42.4 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  LLL+    P  +L +T T  AA EM  RV  I+
Sbjct: 34 ILAGAGSGKTRVLTHRIAHLLLSEKVSPFNILAITFTNKAALEMRERVAAIL 85


>gi|284992801|ref|YP_003411355.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM
           43160]
 gi|284066046|gb|ADB76984.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM
           43160]
          Length = 765

 Score = 42.4 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L  R+  LL A    P  +L +T T  AA EM  RV  +         
Sbjct: 50  IVAGAGSGKTRVLTHRIAYLLGARGVQPGEVLAITFTNKAAGEMKERVAALVGPRARAMW 109

Query: 86  ITAWSHLSDEILSAEITKI 104
           ++ +  +   IL AE  K+
Sbjct: 110 VSTFHSMCVRILRAEAAKL 128


>gi|220906933|ref|YP_002482244.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425]
 gi|219863544|gb|ACL43883.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425]
          Length = 797

 Score = 42.4 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 18/144 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+L +   P  +L +T T  AA EM  R+ ++         
Sbjct: 28  VVAGAGSGKTRALTYRIANLVLTHRIAPENILAVTFTNKAAREMKERIKKLFA-----EQ 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA--- 151
           + L      I   KP + +  + + +  TI+     L + T H+ C  I+ +F +E    
Sbjct: 83  QALQQYGQSIASLKPFERNRLETQ-VYKTIIRD---LWIGTFHSLCARIL-RFEIEKYRD 137

Query: 152 ----NITSHFAIADEEQSKKLIEE 171
                  S+F+I DE   + LI++
Sbjct: 138 SKGRQWQSNFSIFDESDVQSLIKD 161


>gi|220919102|ref|YP_002494406.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956956|gb|ACL67340.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1111

 Score = 42.4 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 25/148 (16%)

Query: 38  ANAGSGKTHILVQRVL-RLLLANAHPSTLL----CLTHTKAAAAEMSHRVLEIITAWSHL 92
           A AG+GKT +LV R++ R+   +  P+  L     +T T+ AA E+  R+ E       L
Sbjct: 28  AGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRKAAGELRLRIREA------L 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
              +  A++T+++            R  L   L       V TIHAF + +++  P+EA 
Sbjct: 82  LRALARADLTELR------------RRRLADALSALDTAHVGTIHAFADRLLRLRPVEAR 129

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI 180
           ++  + I +++    L++EA  + L ++
Sbjct: 130 LSPSYDIVEDDAP--LVDEAFAAFLHAV 155


>gi|153062|gb|AAA72091.1| helicase [Staphylococcus aureus]
 gi|742312|prf||2009360A helicase
          Length = 675

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAREMKERVQKLV 76


>gi|187935645|ref|YP_001884643.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B]
 gi|187723798|gb|ACD25019.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B]
          Length = 750

 Score = 42.0 bits (97), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 39/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  ++      P  +L +T T  AA EM  RV+ +I          
Sbjct: 26  AGAGSGKTRVLTYRMAHMIENIGIAPYNILAITFTNKAAKEMKDRVISLIG--------- 76

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                             SKA ++ I+           T H+ C  I+++   +    S+
Sbjct: 77  ------------------SKAENMWIS-----------TFHSTCVRILRREIDKIGYNSN 107

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D    K LI+E  K
Sbjct: 108 FTIYDTSDQKVLIKECMK 125


>gi|186477746|ref|YP_001859216.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184194205|gb|ACC72170.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 731

 Score = 42.0 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+      P  +  +T T  AAAEM  RV            
Sbjct: 58  VLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKAAAEMRERV-----------G 106

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 107 KLLEGKTLTAPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 152

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +I+E   ST
Sbjct: 153 PQFSIMDSDDCFGMIQEQVGST 174


>gi|152964726|ref|YP_001360510.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
           SRS30216]
 gi|151359243|gb|ABS02246.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
           SRS30216]
          Length = 773

 Score = 42.0 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
           + A AGSGKT +L  R+  LL    A P  +L +T T  AAAEM  RV
Sbjct: 54  IVAGAGSGKTRVLTHRIAYLLARGRATPGEVLAITFTNKAAAEMRERV 101


>gi|317009567|gb|ADU80147.1| Rep helicase [Helicobacter pylori India7]
          Length = 676

 Score = 42.0 bits (97), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKATKALKGHNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASHE 65

Query: 78 MSHRV 82
          M  RV
Sbjct: 66 MISRV 70


>gi|306844312|ref|ZP_07476904.1| DNA helicase II [Brucella sp. BO1]
 gi|306275384|gb|EFM57125.1| DNA helicase II [Brucella sp. BO1]
          Length = 858

 Score = 42.0 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T T  AA EM  R+  ++
Sbjct: 96  LAVTFTNKAAREMKERIGHLV 116


>gi|208434816|ref|YP_002266482.1| rephelicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori G27]
 gi|208432745|gb|ACI27616.1| rephelicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori G27]
          Length = 675

 Score = 42.0 bits (97), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+  ++    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRV 82
          M  RV
Sbjct: 66 MIARV 70


>gi|147678864|ref|YP_001213079.1| superfamily I DNA/RNA helicase [Pelotomaculum thermopropionicum
          SI]
 gi|146274961|dbj|BAF60710.1| superfamily I DNA and RNA helicases [Pelotomaculum
          thermopropionicum SI]
          Length = 710

 Score = 42.0 bits (97), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
          +DL+SQ   +Q+ A +       V A AGSGKT +L  RV  LL      P  +L +T T
Sbjct: 1  MDLLSQLNPDQVAAVTHGEGPLLVLAGAGSGKTRVLTCRVAYLLKEFKVLPHQILAITFT 60

Query: 72 KAAAAEMSHRVLEII 86
            AA EM  RV  ++
Sbjct: 61 NKAAGEMRERVGALV 75


>gi|309801365|ref|ZP_07695494.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium
          JCVIHMP022]
 gi|308222254|gb|EFO78537.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium
          JCVIHMP022]
          Length = 794

 Score = 42.0 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  LL      S +L +T T  AAAEM  R+  ++
Sbjct: 36 IGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKAAAEMRERLAALV 86


>gi|303240431|ref|ZP_07326948.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus
            CD2]
 gi|302591996|gb|EFL61727.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus
            CD2]
          Length = 1602

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 24   QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
            +++  + T+   V+A  GSGKT +LV ++  LLL  +     LL +T ++AA  E   R+
Sbjct: 1055 KIITDNQTKHIVVAAGPGSGKTRVLVHKLASLLLMEDVKHEQLLMVTFSRAAVTEFKKRL 1114

Query: 83   LEII 86
            L++I
Sbjct: 1115 LKLI 1118


>gi|258591574|emb|CBE67875.1| DNA helicase II [NC10 bacterium 'Dutch sediment']
          Length = 729

 Score = 42.0 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 31/141 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ +R+  L+      P  +L +T T  AA EM  RV            
Sbjct: 27  VLAGAGSGKTRVITRRIAYLIGHCGVAPWNILAVTFTNKAAGEMKRRV------------ 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               A++      +P   D S              G+ V T H+ C  I+++      I 
Sbjct: 75  ----ADLVGQHASEPGLRDGS--------------GVWVGTFHSTCVRILRKHGAALGIK 116

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S F I DE     L+ +  ++
Sbjct: 117 SSFVIYDEGDQMSLMRDCLRA 137


>gi|229084316|ref|ZP_04216597.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-44]
 gi|228698973|gb|EEL51677.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-44]
          Length = 644

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E+  RV
Sbjct: 27 AGAGSGKTSVLTTRVGYLINVKHVHPRNILLLTFTQKAAEEIRSRV 72


>gi|188579666|ref|YP_001923111.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179343164|gb|ACB78576.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 798

 Score = 42.0 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 12  ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           E    +S    EQ  A + T     V A AG+GKT +L  R+  L+    A P  +L +T
Sbjct: 39  EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98

Query: 70  HTKAAAAEMSHRV 82
            T  AA EM HR+
Sbjct: 99  FTNKAAREMKHRI 111


>gi|154492504|ref|ZP_02032130.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184]
 gi|154087729|gb|EDN86774.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184]
          Length = 1619

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 17   ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
            +S+T+ E ++  D   S  V A  GSGKT +LV ++  LLL  +     LL LT ++AAA
Sbjct: 1049 LSETQLE-IVKDDRPGSIVVMAGPGSGKTRVLVHKLAYLLLEEDVKHEQLLMLTFSRAAA 1107

Query: 76   AEMSHRVLEII 86
            +E   R+ ++I
Sbjct: 1108 SEFRRRLWDLI 1118


>gi|82751561|ref|YP_417302.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|82657092|emb|CAI81529.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAREMKERVQKLV 76


>gi|323439849|gb|EGA97565.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
 gi|323443012|gb|EGB00633.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAREMKERVQKLV 76


>gi|289522440|ref|ZP_06439294.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504276|gb|EFD25440.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 662

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 43/168 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +T  L+SQ    Q  A   T+    V A AGSGKT +L  +   L+ +  A P  +L +T
Sbjct: 2   QTEQLLSQLNPRQREAVLYTKGPLLVLAGAGSGKTRVLTYKFAYLVASGLAQPWQILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV      W+ L  +I                                 
Sbjct: 62  FTNKAAREMKERV------WALLGSDI--------------------------------N 83

Query: 130 GLKVQTIHAFCEAIMQQFP---LEANITSHFAIADEEQSKKLIEEAKK 174
            L + T H++    + ++     EA I   F++ D   S+KL+E   K
Sbjct: 84  NLHISTFHSYGVEFLYRYTKEVGEAGIRVPFSVFDRGDSQKLVERLMK 131


>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
 gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
          Length = 534

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           QT++  +L S   R A V A+ G+GKT      +L+ L+   H    L LT T+    E+
Sbjct: 39  QTEAIPVLLSG--RDAIVQAHTGTGKTAAFALPILQGLVPYGHGPQALVLTPTR----EL 92

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           + +V E I    H     L A +  + G +P +  +   RH +  I+ TPG
Sbjct: 93  AIQVAEAI----HRLGRYLDARVLALYGGQPIERQLRALRHPVDVIVGTPG 139


>gi|218132415|ref|ZP_03461219.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992753|gb|EEC58755.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC
           43243]
          Length = 766

 Score = 42.0 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+     +P  +L +T T  AA+EM  RV ++++       
Sbjct: 24  ILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAASEMRERVDKVVSM------ 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                 A H+ ++           T H+ C  I++++       
Sbjct: 78  ---------------------GAEHVWVS-----------TFHSMCVRILRRYIDRIGYD 105

Query: 155 SHFAIADEEQSKKLIEEAKK 174
           ++F I D +  K ++ EA K
Sbjct: 106 TNFTIYDSDDQKSIVREAIK 125


>gi|217034405|ref|ZP_03439819.1| hypothetical protein HP9810_884g10 [Helicobacter pylori 98-10]
 gi|216943136|gb|EEC22608.1| hypothetical protein HP9810_884g10 [Helicobacter pylori 98-10]
          Length = 675

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRV 82
          M  RV
Sbjct: 66 MIARV 70


>gi|240047396|ref|YP_002960784.1| ATP-dependent helicase PcrA [Mycoplasma conjunctivae HRC/581]
 gi|239984968|emb|CAT04961.1| ATP-dependent helicase PcrA [Mycoplasma conjunctivae]
          Length = 737

 Score = 42.0 bits (97), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AG+GKT +L +++  +++   A+P+ +L LT T  AA EM  R+  +I
Sbjct: 18 IVAGAGTGKTSVLTKKIAYIVIEKKAYPNQILALTFTNKAAIEMKERLQSLI 69


>gi|305667011|ref|YP_003863298.1| putative helicase [Maribacter sp. HTCC2170]
 gi|88709246|gb|EAR01480.1| putative helicase [Maribacter sp. HTCC2170]
          Length = 787

 Score = 42.0 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+ EI+
Sbjct: 36 VIAGAGSGKTRVLTYRIAHLMAQGVDSFNILALTFTNKAAREMKKRIAEIV 86


>gi|261838287|gb|ACX98053.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori
          51]
          Length = 676

 Score = 42.0 bits (97), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRV 82
          M  RV
Sbjct: 66 MIARV 70


>gi|78484557|ref|YP_390482.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
 gi|78362843|gb|ABB40808.1| ATP-dependent DNA helicase Rep [Thiomicrospira crunogena XCL-2]
          Length = 677

 Score = 42.0 bits (97), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 39/153 (25%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           A V A AGSGKT ++ +++  L+   +  P  +  LT T  AA EM  RV +++      
Sbjct: 19  ALVLAGAGSGKTRVITEKIAYLIRKHDVQPHHIYALTFTNKAAKEMKERVSKLL------ 72

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                             K D SK             GL V T H     I++Q      
Sbjct: 73  ------------------KDDPSK-------------GLNVSTFHNLGLNIIRQEYHALG 101

Query: 153 ITSHFAIADEEQSKKLIEE-AKKSTLASIMLDN 184
             S F+I D   +K++++E  KK  L+   LD 
Sbjct: 102 YKSTFSIMDATDTKQILKELMKKQQLSEEELDG 134


>gi|56962858|ref|YP_174585.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16]
 gi|56909097|dbj|BAD63624.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii
          KSM-K16]
          Length = 751

 Score = 42.0 bits (97), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  LL  ++ P   +L LT T  AA EM  RV +++
Sbjct: 35 AGAGSGKTRVLTYRISYLLRRHSTPPWAVLALTFTNKAAREMKDRVAQLV 84


>gi|304392202|ref|ZP_07374144.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130]
 gi|303296431|gb|EFL90789.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130]
          Length = 860

 Score = 42.0 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A PS +L +T T  AA EM HR+
Sbjct: 55  VLAGAGTGKTRVLTTRITHILQQRMAWPSQILAVTFTNKAAREMKHRI 102


>gi|284033229|ref|YP_003383160.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812522|gb|ADB34361.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1079

 Score = 42.0 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 25/153 (16%)

Query: 7   FQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPS 63
            +  ++ +DL+    S+Q L   + P     + A AGSGKT  +  RV+ L+      P 
Sbjct: 5   LESTADLVDLLGIPFSDQQLEAITAPLAPGVIVAGAGSGKTTAMAARVVWLICTGQVKPE 64

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE-------ILSAEITKIQGKKPNKSDMSK 116
            +L LT TK AA E+  R+ E +T    L          IL+A + K     PN      
Sbjct: 65  EVLGLTFTKKAANELDVRIREDLTKAGVLGSTLPPDQHPILAAHLRK---NVPNWEP--- 118

Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                    E PG   V T HAF   ++ +  L
Sbjct: 119 ---------EEPGEPVVSTYHAFAGTLIAEHGL 142


>gi|221140358|ref|ZP_03564851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus str. JKD6009]
 gi|302751778|gb|ADL65955.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
          aureus str. JKD6008]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAREMKERVQKLV 76


>gi|120556547|ref|YP_960898.1| DNA-dependent helicase II [Marinobacter aquaeolei VT8]
 gi|120326396|gb|ABM20711.1| ATP-dependent DNA helicase UvrD [Marinobacter aquaeolei VT8]
          Length = 726

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +LV R+  L+ +    P+++L +T T  AA EM +RV +++
Sbjct: 32 VLAGAGSGKTRVLVHRMAWLMSVDRVPPTSILAVTFTNKAAKEMRYRVEQMM 83


>gi|116671302|ref|YP_832235.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611411|gb|ABK04135.1| UvrD/REP helicase [Arthrobacter sp. FB24]
          Length = 1183

 Score = 42.0 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAA 75
           S T  +  + S P     V A AGSGKT  +  RV+  L+AN    P  +L +T T+ AA
Sbjct: 26  SPTAEQSAIISSPLTPRLVIAGAGSGKTATMADRVV-WLVANGWVRPEEVLGVTFTRKAA 84

Query: 76  AEMSHRVLEIITAWSHLSDE 95
            E++ R+   ++A   ++ E
Sbjct: 85  GELASRIRSKLSALQRIAAE 104


>gi|15924895|ref|NP_372429.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|15927479|ref|NP_375012.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          N315]
 gi|148268378|ref|YP_001247321.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus JH9]
 gi|150394440|ref|YP_001317115.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus JH1]
 gi|156980221|ref|YP_001442480.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          Mu3]
 gi|253316914|ref|ZP_04840127.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          str. CF-Marseille]
 gi|255006692|ref|ZP_05145293.2| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|257426037|ref|ZP_05602459.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257428710|ref|ZP_05605105.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257431320|ref|ZP_05607696.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          68-397]
 gi|257434038|ref|ZP_05610389.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257436942|ref|ZP_05612984.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus M876]
 gi|257793289|ref|ZP_05642268.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781]
 gi|258408883|ref|ZP_05681165.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763]
 gi|258421013|ref|ZP_05683944.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719]
 gi|258422982|ref|ZP_05685881.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635]
 gi|258430015|ref|ZP_05688385.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299]
 gi|258443467|ref|ZP_05691809.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115]
 gi|258445325|ref|ZP_05693516.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258447889|ref|ZP_05696023.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224]
 gi|258453322|ref|ZP_05701307.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937]
 gi|269203558|ref|YP_003282827.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282894572|ref|ZP_06302800.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117]
 gi|282904536|ref|ZP_06312421.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus C160]
 gi|282906309|ref|ZP_06314161.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus Btn1260]
 gi|282909225|ref|ZP_06317041.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus WW2703/97]
 gi|282911530|ref|ZP_06319330.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus WBG10049]
 gi|282914703|ref|ZP_06322488.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus M899]
 gi|282917252|ref|ZP_06325007.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus D139]
 gi|282919740|ref|ZP_06327472.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus C427]
 gi|282925144|ref|ZP_06332804.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus C101]
 gi|282928078|ref|ZP_06335685.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102]
 gi|283771055|ref|ZP_06343946.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
          aureus H19]
 gi|283958666|ref|ZP_06376112.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus A017934/97]
 gi|293507780|ref|ZP_06667622.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|293510282|ref|ZP_06668988.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus M809]
 gi|293539337|ref|ZP_06672016.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus M1015]
 gi|295407286|ref|ZP_06817085.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819]
 gi|296275663|ref|ZP_06858170.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus MR1]
 gi|297246189|ref|ZP_06930040.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796]
 gi|54038823|sp|P64319|PCRA_STAAN RecName: Full=ATP-dependent DNA helicase pcrA
 gi|54041649|sp|P64318|PCRA_STAAM RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13701698|dbj|BAB42991.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          N315]
 gi|14247677|dbj|BAB58067.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|147741447|gb|ABQ49745.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus JH9]
 gi|149946892|gb|ABR52828.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus JH1]
 gi|156722356|dbj|BAF78773.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          Mu3]
 gi|257271180|gb|EEV03337.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257274354|gb|EEV05866.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257277969|gb|EEV08625.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          68-397]
 gi|257280964|gb|EEV11108.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257283731|gb|EEV13856.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus M876]
 gi|257787261|gb|EEV25601.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781]
 gi|257840330|gb|EEV64792.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763]
 gi|257842961|gb|EEV67379.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719]
 gi|257846769|gb|EEV70784.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635]
 gi|257849609|gb|EEV73577.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299]
 gi|257851352|gb|EEV75292.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115]
 gi|257855843|gb|EEV78767.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257858821|gb|EEV81690.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224]
 gi|257864530|gb|EEV87273.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937]
 gi|262075848|gb|ACY11821.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282313102|gb|EFB43500.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus C101]
 gi|282316378|gb|EFB46755.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus C427]
 gi|282318879|gb|EFB49234.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus D139]
 gi|282321417|gb|EFB51743.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus M899]
 gi|282324539|gb|EFB54851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus WBG10049]
 gi|282326793|gb|EFB57090.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus WW2703/97]
 gi|282330506|gb|EFB60023.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus Btn1260]
 gi|282590142|gb|EFB95223.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102]
 gi|282595092|gb|EFC00059.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus C160]
 gi|282763059|gb|EFC03191.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117]
 gi|283459649|gb|EFC06740.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
          aureus H19]
 gi|283471176|emb|CAQ50387.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus ST398]
 gi|283789706|gb|EFC28528.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus A017934/97]
 gi|285817586|gb|ADC38073.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus
          04-02981]
 gi|290919872|gb|EFD96941.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus M1015]
 gi|291094843|gb|EFE25111.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|291466646|gb|EFF09166.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus M809]
 gi|294967861|gb|EFG43891.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819]
 gi|297176896|gb|EFH36153.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796]
 gi|298695247|gb|ADI98469.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
          ED133]
 gi|302333570|gb|ADL23763.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
          aureus JKD6159]
 gi|312437628|gb|ADQ76699.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus TCH60]
 gi|312830278|emb|CBX35120.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus ECT-R 2]
 gi|315129285|gb|EFT85279.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          CGS03]
 gi|315193435|gb|EFU23832.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          CGS00]
 gi|329724791|gb|EGG61295.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus 21172]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAREMKERVQKLV 76


>gi|294775536|ref|ZP_06741046.1| UvrD/REP helicase [Bacteroides vulgatus PC510]
 gi|294450586|gb|EFG19076.1| UvrD/REP helicase [Bacteroides vulgatus PC510]
          Length = 1058

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L ++   W  + D+
Sbjct: 12  ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                + KI  + + P +   + A   L  ++      +V+TI +F +++M+    E  +
Sbjct: 70  DSDPYLQKITEELEMPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129

Query: 154 TSHFAI 159
            ++  I
Sbjct: 130 GANLNI 135


>gi|239617417|ref|YP_002940739.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1]
 gi|239506248|gb|ACR79735.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1]
          Length = 991

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 29/151 (19%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL-----LCL 68
           DL      E  +     R  ++SA+AG+GKT+ LV   +++   A  H   L     + +
Sbjct: 8   DLFGYFVEEGRIIVSVNRDIFISASAGTGKTYRLVSHYVQIFEEAFRHGEKLDVHNVVAI 67

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ A+ EM  RV        HL          KI+  +P   D    R  LI      
Sbjct: 68  TFTRKASKEMKERV--------HLRIN------EKIENNEP--GDWKNLRSRLIYAW--- 108

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159
               + TIH+FCE I+++  +   I   F I
Sbjct: 109 ----ISTIHSFCERILRESSIFLGIDPGFEI 135


>gi|118466048|ref|YP_880325.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104]
 gi|118167335|gb|ABK68232.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104]
          Length = 774

 Score = 42.0 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +RV  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 38  IVAGAGSGKTAVLTRRVAYLIAARGVGVGQVLAITFTNKAAAEMRERVVRLVG------- 90

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                               ++AR            + V T H+ C  I++ Q  L   +
Sbjct: 91  --------------------NRAR-----------AMWVSTFHSTCVRILRNQASLIEGL 119

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 120 NSNFSIYDADDSRRLLQ 136


>gi|91793704|ref|YP_563355.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans
           OS217]
 gi|91715706|gb|ABE55632.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans
           OS217]
          Length = 1355

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEII- 86
           S+ + A+AG+GKT+ +    LRLLL +     L C     +T T AA  E+  R+ + I 
Sbjct: 47  SSLIEASAGTGKTYTISGLYLRLLLGHGELPPLSCEQILVVTFTNAATQELRDRIRKRIQ 106

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A+       +  E      +   +S+   A   L   L++     + TIH FC+ I+  
Sbjct: 107 VAFKCFLGVAVEDEFVNALKQAFPESERQIALKRLDLALKSLDEAAIFTIHGFCQRILAD 166

Query: 147 FPLEANI--TSHFAIADEE 163
              E+++   S F + D E
Sbjct: 167 LAFESSLLFESEFTLDDSE 185


>gi|121601965|ref|YP_989213.1| putative DNA helicase II [Bartonella bacilliformis KC583]
 gi|120614142|gb|ABM44743.1| putative DNA helicase II [Bartonella bacilliformis KC583]
          Length = 816

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L L  A+P  +L +T T  AA EM  R+ E++
Sbjct: 63  VLAGAGTGKTRVLTTRIAHILHLGLAYPRQILAVTFTNKAANEMKIRIGELV 114


>gi|269793285|ref|YP_003318189.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100920|gb|ACZ19907.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 1125

 Score = 42.0 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 25/127 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AG+GKTH L  RV  L+          +  LT T+ AA EM  R+ +I+  W    
Sbjct: 33  VKAGAGTGKTHTLSGRVAYLMATQEGLELDQVAVLTFTEKAAQEMGERIRDILLHWGR-- 90

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                      + K P   + S+            G   + TIH+F   ++++ P EA +
Sbjct: 91  -----------ELKMPRLEEASR----------RVGEAYISTIHSFALRLIRENPAEAKL 129

Query: 154 TSHFAIA 160
               ++A
Sbjct: 130 PVDASVA 136


>gi|154494054|ref|ZP_02033374.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC
           43184]
 gi|154086314|gb|EDN85359.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC
           43184]
          Length = 1075

 Score = 42.0 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 14/134 (10%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII--TAWSHLSD 94
           A+AG+GKTH L    L LL         +L +T T  A  EM  R+++ +   A    SD
Sbjct: 7   ASAGAGKTHKLTGEYLTLLFTGPGAFRRILAVTFTNKATDEMKTRIVDELYNLASGRKSD 66

Query: 95  --EILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             E+L +   +T+IQ +K       +A  +LI IL       + TI  F +  M+ F  E
Sbjct: 67  YVELLKSAYSLTEIQVRK-------QAAQILIDILHDYSAFNISTIDRFFQQTMRAFTRE 119

Query: 151 ANITSHFAIADEEQ 164
             +   + I  +++
Sbjct: 120 IGLQGGYGIEMDQE 133


>gi|148263393|ref|YP_001230099.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
 gi|146396893|gb|ABQ25526.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74
          +S    +QL A   T  A  V A AGSGKT ++  R+  LLL    P+  +L +T T  A
Sbjct: 4  LSTLNPQQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLLLNKKVPAMNILAVTFTNKA 63

Query: 75 AAEMSHRV 82
          A EM  RV
Sbjct: 64 AKEMRERV 71


>gi|49484146|ref|YP_041370.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|295428487|ref|ZP_06821114.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|68605635|sp|Q6GFF2|PCRA_STAAR RecName: Full=ATP-dependent DNA helicase pcrA
 gi|49242275|emb|CAG40982.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|295127469|gb|EFG57108.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus EMRSA16]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAREMKERVQKLV 76


>gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199692|emb|CAE49351.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae]
          Length = 805

 Score = 42.0 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 40/141 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ +    P  +L +T T  AAAEM  RV  ++   +    
Sbjct: 44  IVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKAAAEMRERVSSLVGPVAQR-- 101

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-QQFPLEANI 153
                                               + V T H+ C  I+ +Q  L   +
Sbjct: 102 ------------------------------------MWVSTFHSTCVRILREQAQLVPGL 125

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
            ++F I D + SK+L+    K
Sbjct: 126 NTNFTIYDSDDSKRLLSMISK 146


>gi|328953552|ref|YP_004370886.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
 gi|328453876|gb|AEB09705.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          V A AGSGKT  LV R+  L+     P  +L LT T+ A+ EM HR  ++I    H
Sbjct: 36 VIAGAGSGKTRTLVYRLAYLVEHGIPPWNILLLTFTRKASQEMLHRASQLINRPLH 91


>gi|241661828|ref|YP_002980188.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240863855|gb|ACS61516.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 970

 Score = 42.0 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 32/107 (29%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGK+  L  R+ RL+     P+T++ +T T+ AA  +  R+ +++           
Sbjct: 35  ACAGSGKSQTLAYRIARLMHQGVPPNTIVAITFTEKAADSIKRRIADVLVR--------- 85

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                   G+ PN          LI      G + + TIHAFC+ ++
Sbjct: 86  -------TGQSPN----------LI------GQMFIGTIHAFCQNVL 109


>gi|238792356|ref|ZP_04635990.1| Helicase IV (75 kDa helicase) [Yersinia intermedia ATCC 29909]
 gi|238728282|gb|EEQ19802.1| Helicase IV (75 kDa helicase) [Yersinia intermedia ATCC 29909]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL  N A P  +L L   + AA EM+HR+
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNHRI 261


>gi|326336392|ref|ZP_08202563.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338
          str. F0234]
 gi|325691566|gb|EGD33534.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338
          str. F0234]
          Length = 773

 Score = 42.0 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     P  +L LT T  AA EM  R+  I+
Sbjct: 24 VIAGAGSGKTRVLTYRIAYLMQQGVDPFNILALTFTNKAAREMKERIGRIV 74


>gi|253734985|ref|ZP_04869150.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|253727167|gb|EES95896.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          TCH130]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAREMKERVQKLV 76


>gi|220903357|ref|YP_002478669.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
 gi|219867656|gb|ACL47991.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
          Length = 768

 Score = 42.0 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT  +V R+  L      P ++L LT T+ AA EM HR
Sbjct: 25 VVAGAGSGKTRTIVYRLAWLAENGVSPESMLLLTFTRKAAQEMLHR 70


>gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
 gi|183177849|gb|ACC42959.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
          Length = 769

 Score = 42.0 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 32  IVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFTNKAAAEMRERVVSLVGG------ 85

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                +A+++ ++           T H+ C  I++ Q  L   +
Sbjct: 86  ---------------------RAKYMWVS-----------TFHSTCVRILRNQAALIKGL 113

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 114 NSNFSIYDADDSRRLLQ 130


>gi|139439548|ref|ZP_01772980.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC
           25986]
 gi|133775101|gb|EBA38921.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC
           25986]
          Length = 966

 Score = 42.0 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 41/159 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           ID ++  + E +L+++      V A AGSGKT +L  R+  +L      P  +L +T T 
Sbjct: 59  IDSLNPAQREAVLSTEG--PLLVLAGAGSGKTRVLTFRIAHMLGDLGVKPWQVLAITFTN 116

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I + +                                       G+ 
Sbjct: 117 KAAAEMRERLAALIPSGTR--------------------------------------GMW 138

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           V T HA C  ++++       T  F I D++ SK+++ +
Sbjct: 139 VCTFHAMCVRMLREDADLLGYTGQFTIYDDDDSKRMVRD 177


>gi|186476348|ref|YP_001857818.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184192807|gb|ACC70772.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 790

 Score = 42.0 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L++    EQ  A + P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3  ELLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGFASPPTILGVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMSRL 72


>gi|297182254|gb|ADI18424.1| superfamily I DNA and RNA helicases [uncultured delta
          proteobacterium HF4000_08N17]
          Length = 674

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +++QR+  L+      P  +L +T T  AA EM  R+ E ++ 
Sbjct: 26 AGAGSGKTQVIIQRIAYLIRKKQVPPQQILAVTFTNKAAEEMRERLKETLSG 77


>gi|307244586|ref|ZP_07526690.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
          stomatis DSM 17678]
 gi|306491967|gb|EFM64016.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
          stomatis DSM 17678]
          Length = 623

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVL 83
          V A  GSGKT I+ QR++ ++L +  P T +L ++ TKA++ EM  R L
Sbjct: 21 VLAGPGSGKTRIISQRIVSMVLDHDIPPTRILAISFTKASSLEMKKRTL 69


>gi|299532528|ref|ZP_07045918.1| UvrD/REP helicase [Comamonas testosteroni S44]
 gi|298719475|gb|EFI60442.1| UvrD/REP helicase [Comamonas testosteroni S44]
          Length = 827

 Score = 42.0 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++    EQL A + P   A + A AGSGKT +L  R+  LL    A P +++ +T T  
Sbjct: 26 LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 86 AAKEMLTRL 94


>gi|228474096|ref|ZP_04058837.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC
          33624]
 gi|228274610|gb|EEK13451.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC
          33624]
          Length = 772

 Score = 42.0 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     P  +L LT T  AA EM  R+  I+
Sbjct: 24 VIAGAGSGKTRVLTYRIAYLIQQGVDPFNILALTFTNKAAREMKERIGRIV 74


>gi|254503334|ref|ZP_05115485.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222439405|gb|EEE46084.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 822

 Score = 42.0 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ LA + T     V A AG+GKT +L  R+  +L +  A P  +L +T T 
Sbjct: 57  DYLTGLNPEQRLAVETTEGPLLVLAGAGTGKTRVLTTRIAHILASGLARPHEMLAVTFTN 116

Query: 73  AAAAEMSHRV 82
            AA EM  R+
Sbjct: 117 KAAREMKERI 126


>gi|150005966|ref|YP_001300710.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934390|gb|ABR41088.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
          Length = 1058

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L ++   W  + D+
Sbjct: 12  ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                + KI  + + P +   + A   L  ++      +V+TI +F +++M+    E  +
Sbjct: 70  DSDPYLQKITEELEMPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129

Query: 154 TSHFAI 159
            ++  I
Sbjct: 130 GANLNI 135


>gi|21283575|ref|NP_646663.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          MW2]
 gi|49486724|ref|YP_043945.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57650656|ref|YP_186790.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus COL]
 gi|87160459|ref|YP_494538.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|88195804|ref|YP_500614.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|151222055|ref|YP_001332877.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
          str. Newman]
 gi|161510128|ref|YP_001575787.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus USA300_TCH1516]
 gi|253729683|ref|ZP_04863848.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|258451029|ref|ZP_05699065.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948]
 gi|282923244|ref|ZP_06330925.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765]
 gi|284024952|ref|ZP_06379350.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
          aureus 132]
 gi|294849454|ref|ZP_06790196.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754]
 gi|297208935|ref|ZP_06925339.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus ATCC 51811]
 gi|300913008|ref|ZP_07130446.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus TCH70]
 gi|304379093|ref|ZP_07361840.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
 gi|38604904|sp|Q8NVT1|PCRA_STAAW RecName: Full=ATP-dependent DNA helicase pcrA
 gi|68605626|sp|Q6G828|PCRA_STAAS RecName: Full=ATP-dependent DNA helicase pcrA
 gi|81694154|sp|Q5HEL7|PCRA_STAAC RecName: Full=ATP-dependent DNA helicase pcrA
 gi|110282982|sp|Q53727|PCRA_STAA8 RecName: Full=ATP-dependent DNA helicase pcrA
 gi|21205016|dbj|BAB95711.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          MW2]
 gi|49245167|emb|CAG43633.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57284842|gb|AAW36936.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus COL]
 gi|87126433|gb|ABD20947.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|87203362|gb|ABD31172.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|150374855|dbj|BAF68115.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
          str. Newman]
 gi|160368937|gb|ABX29908.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus USA300_TCH1516]
 gi|253726569|gb|EES95298.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|257861271|gb|EEV84083.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948]
 gi|269941377|emb|CBI49774.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
          TW20]
 gi|282593155|gb|EFB98154.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765]
 gi|294823591|gb|EFG40018.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754]
 gi|296886425|gb|EFH25354.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus ATCC 51811]
 gi|300885786|gb|EFK80993.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus TCH70]
 gi|304342328|gb|EFM08220.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
 gi|315196225|gb|EFU26580.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus CGS01]
 gi|320139714|gb|EFW31583.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus MRSA131]
 gi|320142369|gb|EFW34183.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus MRSA177]
 gi|329314582|gb|AEB88995.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
          aureus T0131]
 gi|329728640|gb|EGG65070.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus 21189]
 gi|329731448|gb|EGG67811.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus 21193]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAREMKERVQKLV 76


>gi|304382260|ref|ZP_07364767.1| ATP-dependent helicase [Prevotella marshii DSM 16973]
 gi|304336617|gb|EFM02846.1| ATP-dependent helicase [Prevotella marshii DSM 16973]
          Length = 1088

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD- 94
           A+AGSGKT  L    ++LL+ + +  +++L +T T  A  EM  R+L ++   W  L D 
Sbjct: 24  ASAGSGKTFTLAVEYMKLLIRDPYAYASILAVTFTNKATEEMKMRILGQLYGIWKLLPDS 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           +  +  I       P  +   +A   L  +L      +V+TI  F +++++    E ++ 
Sbjct: 84  QAYTDRICHTLELSPAVA-AERAGIALRLLLHNYSYFRVETIDTFFQSVLRNLARELDLN 142

Query: 155 SHFAI------ADEEQSKKLIEE 171
           ++  +       +++   KLIEE
Sbjct: 143 ANLRVELNDRQVEQQAVDKLIEE 165


>gi|237720843|ref|ZP_04551324.1| ATP-dependent helicase [Bacteroides sp. 2_2_4]
 gi|229449678|gb|EEO55469.1| ATP-dependent helicase [Bacteroides sp. 2_2_4]
          Length = 1056

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++L++ N      +L +T T  A AEM  R+L  +     + D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLIILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67

Query: 97  LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|228904778|ref|ZP_04068832.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
 gi|228854792|gb|EEM99396.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
          Length = 644

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  R+  LL     P  +L +T T  +A EM  RV
Sbjct: 21 VLAGAGSGKTKVLTTRIAYLLQQGVDPWRILAITFTNKSAKEMKERV 67


>gi|228957601|ref|ZP_04119351.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228802050|gb|EEM48917.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 630

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 12 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 57


>gi|171742279|ref|ZP_02918086.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC
          27678]
 gi|283456614|ref|YP_003361178.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|171277893|gb|EDT45554.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC
          27678]
 gi|283103248|gb|ADB10354.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium
          dentium Bd1]
          Length = 1346

 Score = 42.0 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+E+  RV
Sbjct: 27 VVAGAGSGKTYTMTRRIINLIEQGVSPERILGLTFTRKAASELLSRV 73


>gi|59801156|ref|YP_207868.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA
          1090]
 gi|240016517|ref|ZP_04723057.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
          FA6140]
 gi|240112994|ref|ZP_04727484.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11]
 gi|240118044|ref|ZP_04732106.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1]
 gi|240125781|ref|ZP_04738667.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
          SK-92-679]
 gi|240128301|ref|ZP_04740962.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
          SK-93-1035]
 gi|293399023|ref|ZP_06643188.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62]
 gi|59718051|gb|AAW89456.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA
          1090]
 gi|291610437|gb|EFF39547.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62]
          Length = 671

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          +V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 20 FVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|218768450|ref|YP_002342962.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491]
 gi|254805228|ref|YP_003083449.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
 gi|121052458|emb|CAM08794.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491]
 gi|254668770|emb|CBA06672.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
 gi|325128494|gb|EGC51372.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis N1568]
          Length = 671

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 49/187 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++        
Sbjct: 21  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                        KP                    GL + T H+    I+++        
Sbjct: 74  -------------KPQTR-----------------GLTICTFHSLGMKILREEANHIGYK 103

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210
            +F+I D   S K+I E    T         E + KA ++I    ND    ED+    S+
Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTASN 156

Query: 211 IISNRTA 217
           I   +TA
Sbjct: 157 IWEQQTA 163


>gi|88860136|ref|ZP_01134775.1| DNA helicase IV [Pseudoalteromonas tunicata D2]
 gi|88818130|gb|EAR27946.1| DNA helicase IV [Pseudoalteromonas tunicata D2]
          Length = 707

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 10/84 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL------EIITA 88
           V A AGSGKT ++V RV  LL +  A PS +L L + K AA EM  R+       +I  A
Sbjct: 212 VLAGAGSGKTSVMVGRVGYLLQSGLAKPSQILMLAYGKDAAQEMDLRLKNSLQRHDIKCA 271

Query: 89  WSHLSDEILSAEITKIQGKKPNKS 112
             H    +  + I ++QG  PN S
Sbjct: 272 TFH---SLALSIINQVQGVMPNIS 292


>gi|261839700|gb|ACX99465.1| ATP-dependent DNA helicase [Helicobacter pylori 52]
          Length = 671

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 2  QLNHEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 61

Query: 78 MSHRVLEIITAWSHL 92
          M  RV +   + S +
Sbjct: 62 MIARVAKYFKSSSKI 76


>gi|229043074|ref|ZP_04190803.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
 gi|228726259|gb|EEL77487.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
          Length = 630

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 12 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 57


>gi|218130915|ref|ZP_03459719.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697]
 gi|217987259|gb|EEC53590.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697]
          Length = 760

 Score = 42.0 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 51/139 (36%), Gaps = 37/139 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL  +  P  +L LT T  AA EM  R+             
Sbjct: 25  VIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFTNKAAREMKERI------------- 71

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                          +  + +ARHL +            T H+    I+     +   TS
Sbjct: 72  -------------ARQVGVERARHLWMG-----------TFHSIFLRILHAEAAQIGFTS 107

Query: 156 HFAIADEEQSKKLIEEAKK 174
            F I D   SK L+    K
Sbjct: 108 RFTIYDTADSKSLLRSIIK 126


>gi|328950824|ref|YP_004368159.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
 gi|328451148|gb|AEB12049.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
          Length = 716

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          T  A V A AGSGKT  +V R+  L+     +P+ +L +T T  AA EM  R+  ++
Sbjct: 19 TGPALVVAGAGSGKTRTVVHRIAYLIRHRGVYPTEILAVTFTNKAAGEMKERLARMV 75


>gi|317182211|dbj|BAJ59995.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori F57]
          Length = 676

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRV 82
          M  RV
Sbjct: 66 MIARV 70


>gi|239638038|ref|ZP_04678997.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603]
 gi|239596321|gb|EEQ78859.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+    +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVKNMNAEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAKEMKARVEQLV 76


>gi|319399870|gb|EFV88117.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis FRI909]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+    SEQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV        HL  E   A++                             + +
Sbjct: 64  AAKEMKARV-------EHLVGE--EAQV-----------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I+E  KS
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKEVLKS 127


>gi|317177700|dbj|BAJ55489.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori F16]
          Length = 676

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRV 82
          M  RV
Sbjct: 66 MIARV 70


>gi|297590041|ref|ZP_06948681.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus MN8]
 gi|297577169|gb|EFH95883.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
          aureus MN8]
          Length = 739

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAREMKERVQKLV 76


>gi|171920710|ref|ZP_02695904.2| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar
          13 str. ATCC 33698]
 gi|185179010|ref|ZP_02964760.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5
          str. ATCC 27817]
 gi|188024022|ref|ZP_02996781.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7
          str. ATCC 27819]
 gi|188518328|ref|ZP_03003841.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar
          11 str. ATCC 33695]
 gi|188524317|ref|ZP_03004355.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar
          12 str. ATCC 33696]
 gi|195867968|ref|ZP_03079965.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9
          str. ATCC 33175]
 gi|198273561|ref|ZP_03206097.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4
          str. ATCC 27816]
 gi|209554036|ref|YP_002284945.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar
          10 str. ATCC 33699]
 gi|225550706|ref|ZP_03771655.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2
          str. ATCC 27814]
 gi|225551585|ref|ZP_03772531.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8
          str. ATCC 27618]
 gi|171903451|gb|EDT49740.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar
          13 str. ATCC 33698]
 gi|184209099|gb|EDU06142.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5
          str. ATCC 27817]
 gi|188019050|gb|EDU57090.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7
          str. ATCC 27819]
 gi|188998009|gb|EDU67106.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar
          11 str. ATCC 33695]
 gi|195660157|gb|EDX53537.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar
          12 str. ATCC 33696]
 gi|195660364|gb|EDX53624.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9
          str. ATCC 33175]
 gi|198250081|gb|EDY74861.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4
          str. ATCC 27816]
 gi|209541537|gb|ACI59766.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar
          10 str. ATCC 33699]
 gi|225379400|gb|EEH01765.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8
          str. ATCC 27618]
 gi|225379860|gb|EEH02222.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2
          str. ATCC 27814]
          Length = 743

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT +L  R+  L+   + HPS +L  T T  AA EM  RV + I
Sbjct: 27 VIAGAGTGKTSVLTLRIAHLITEKHIHPSRILGFTFTNKAADEMKERVGKTI 78


>gi|153810489|ref|ZP_01963157.1| hypothetical protein RUMOBE_00870 [Ruminococcus obeum ATCC 29174]
 gi|149833668|gb|EDM88749.1| hypothetical protein RUMOBE_00870 [Ruminococcus obeum ATCC 29174]
          Length = 610

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          +I +  S+Q   +  +    V A  GSGKT ++V+R   ++      PS +L +T ++AA
Sbjct: 1  MIKRNPSQQRAIAHLSGPMMVLAGPGSGKTSVIVERTAYMINEGGISPSNILVVTFSRAA 60

Query: 75 AAEMSHRVL 83
          A EM  R L
Sbjct: 61 AKEMKERFL 69


>gi|15677304|ref|NP_274459.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58]
 gi|7226688|gb|AAF41807.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58]
 gi|316984578|gb|EFV63543.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76]
 gi|325140608|gb|EGC63128.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis CU385]
 gi|325199937|gb|ADY95392.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76]
          Length = 671

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 49/187 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++        
Sbjct: 21  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                        KP                    GL + T H+    I+++        
Sbjct: 74  -------------KPQTR-----------------GLTICTFHSLGMKILREEANHIGYK 103

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210
            +F+I D   S K+I E    T         E + KA ++I    ND    ED+    S+
Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTASN 156

Query: 211 IISNRTA 217
           I   +TA
Sbjct: 157 IWEQQTA 163


>gi|78221316|ref|YP_383063.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
 gi|78192571|gb|ABB30338.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
          Length = 742

 Score = 42.0 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 44/158 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++V R+  L+      P  +L +T T  AA EM  RV  ++ A      
Sbjct: 24  VLAGAGSGKTRVIVHRIAHLICNLGVPPWQILAVTFTNKAAGEMRERVERLVGA------ 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G+ P                       + T H+ C   +++        
Sbjct: 78  -----------GEAP----------------------LIATFHSTCARFLRRDIHHLGYD 104

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           S FAI D++ ++KL++E     +A + LD      ++F
Sbjct: 105 SSFAIYDDKDAEKLLKE----VIAGLGLDEKRFPARSF 138


>gi|27468508|ref|NP_765145.1| ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC
          12228]
 gi|293367781|ref|ZP_06614430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|38604841|sp|Q8CRT9|PCRA_STAES RecName: Full=ATP-dependent DNA helicase pcrA
 gi|27316055|gb|AAO05189.1|AE016749_135 ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC
          12228]
 gi|291318120|gb|EFE58517.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|329726871|gb|EGG63329.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          VCU144]
 gi|329734740|gb|EGG71046.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          VCU045]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+    SEQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  RV
Sbjct: 64 AAKEMKARV 72


>gi|325204434|gb|ADY99887.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240355]
          Length = 671

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 49/187 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++        
Sbjct: 21  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                        KP                    GL + T H+    I+++        
Sbjct: 74  -------------KPQTR-----------------GLTICTFHSLGMKILREEANHIGYK 103

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210
            +F+I D   S K+I E    T         E + KA ++I    ND    ED+    S+
Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTASN 156

Query: 211 IISNRTA 217
           I   +TA
Sbjct: 157 IWEQQTA 163


>gi|306822880|ref|ZP_07456256.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC
          27679]
 gi|304553512|gb|EFM41423.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC
          27679]
          Length = 885

 Score = 42.0 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  LL      S +L +T T  AAAEM  R+  ++
Sbjct: 44 IGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKAAAEMRERLAALV 94


>gi|296501918|ref|YP_003663618.1| ATP-dependent DNA helicase [Bacillus thuringiensis BMB171]
 gi|296322970|gb|ADH05898.1| ATP-dependent DNA helicase [Bacillus thuringiensis BMB171]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|270261242|ref|ZP_06189515.1| hypothetical protein SOD_a04670 [Serratia odorifera 4Rx13]
 gi|270044726|gb|EFA17817.1| hypothetical protein SOD_a04670 [Serratia odorifera 4Rx13]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           YH+ FQ    TI+      S+     +   S  V A AGSGKT +LV R   LL    A 
Sbjct: 185 YHDFFQ----TIESSPLNDSQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRQEAE 240

Query: 62  PSTLLCLTHTKAAAAEMSHRVLE 84
           P  +L L   + AA EM+ R+ E
Sbjct: 241 PGQILLLAFGRQAAEEMNERIQE 263


>gi|228920050|ref|ZP_04083399.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839506|gb|EEM84798.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|228938446|ref|ZP_04101055.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971325|ref|ZP_04131952.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977936|ref|ZP_04138316.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis Bt407]
 gi|228781724|gb|EEM29922.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis Bt407]
 gi|228788361|gb|EEM36313.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821183|gb|EEM67199.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326938953|gb|AEA14849.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|229143938|ref|ZP_04272355.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST24]
 gi|228639501|gb|EEK95914.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST24]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|194098703|ref|YP_002001765.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
          NCCP11945]
 gi|239999007|ref|ZP_04718931.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240080641|ref|ZP_04725184.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19]
 gi|240123598|ref|ZP_04736554.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
          PID332]
 gi|193933993|gb|ACF29817.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
          NCCP11945]
 gi|317164300|gb|ADV07841.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 671

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          +V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 20 FVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|167856609|ref|ZP_02479309.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755]
 gi|167852265|gb|EDS23579.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755]
          Length = 1195

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL-----LCLTHTKAAAAEMSHRVLE 84
           +S+ + A+AG+GKT+ +    LRL+L    PS L     L +T TKAA  E+  R+ E
Sbjct: 12 NQSSLIEASAGTGKTYTMANLYLRLILGVRCPSPLTVEQILVVTFTKAATQELRDRIRE 70


>gi|57867385|ref|YP_189012.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          RP62A]
 gi|81673999|sp|Q5HN29|PCRA_STAEQ RecName: Full=ATP-dependent DNA helicase pcrA
 gi|57638043|gb|AAW54831.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          RP62A]
 gi|329734814|gb|EGG71119.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          VCU028]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+    SEQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  RV
Sbjct: 64 AAKEMKARV 72


>gi|330685592|gb|EGG97238.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
          VCU121]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+    +EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVKNMNAEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 64 AAKEMKARVEQLV 76


>gi|319638964|ref|ZP_07993722.1| DNA helicase II [Neisseria mucosa C102]
 gi|317399868|gb|EFV80531.1| DNA helicase II [Neisseria mucosa C102]
          Length = 735

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+    +EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNTEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|297537598|ref|YP_003673367.1| UvrD/REP helicase [Methylotenera sp. 301]
 gi|297256945|gb|ADI28790.1| UvrD/REP helicase [Methylotenera sp. 301]
          Length = 732

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   ++QL A + P +SA + A AGSGKT +L  R+  L+      P+ LL +T T  
Sbjct: 7  LLTGLNNKQLEAVTLPQQSALILAGAGSGKTRVLTARIAWLIQTGQVSPTGLLAVTFTNK 66

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 67 AAKEMLTRI 75


>gi|254558836|ref|YP_003065931.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           DM4]
 gi|254266114|emb|CAX21866.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           DM4]
          Length = 795

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 12  ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           E    +S    EQ  A + T     V A AG+GKT +L  R+  L+    A P  +L +T
Sbjct: 39  EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98

Query: 70  HTKAAAAEMSHRV 82
            T  AA EM HR+
Sbjct: 99  FTNKAAREMKHRI 111


>gi|240136984|ref|YP_002961453.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           AM1]
 gi|240006950|gb|ACS38176.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           AM1]
          Length = 795

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 12  ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           E    +S    EQ  A + T     V A AG+GKT +L  R+  L+    A P  +L +T
Sbjct: 39  EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98

Query: 70  HTKAAAAEMSHRV 82
            T  AA EM HR+
Sbjct: 99  FTNKAAREMKHRI 111


>gi|229068885|ref|ZP_04202179.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus F65185]
 gi|228714169|gb|EEL66050.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus F65185]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|229189418|ref|ZP_04316435.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 10876]
 gi|228594009|gb|EEK51811.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 10876]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|227494918|ref|ZP_03925234.1| DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831370|gb|EEH63753.1| DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 1119

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT  + QRVL  LLAN    P  +L LT T+ AAAE +HR+
Sbjct: 2  AGAGSGKTETMSQRVL-FLLANYGIAPERVLGLTFTRKAAAEFAHRL 47


>gi|163849774|ref|YP_001637817.1| UvrD/REP helicase [Methylobacterium extorquens PA1]
 gi|163661379|gb|ABY28746.1| UvrD/REP helicase [Methylobacterium extorquens PA1]
          Length = 795

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 12  ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           E    +S    EQ  A + T     V A AG+GKT +L  R+  L+    A P  +L +T
Sbjct: 39  EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98

Query: 70  HTKAAAAEMSHRV 82
            T  AA EM HR+
Sbjct: 99  FTNKAAREMKHRI 111


>gi|217973462|ref|YP_002358213.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS223]
 gi|217498597|gb|ACK46790.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS223]
          Length = 1273

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    LRLLL +   + L C     +T T AA  E+  R+   I 
Sbjct: 29  SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 L   I    +  +    P +S+ + A       L++     + TIH FC+ I+ 
Sbjct: 89  VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 148 DLAFESSLLFESDFTLDDSE 167


>gi|94265519|ref|ZP_01289267.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
 gi|93453960|gb|EAT04306.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
          Length = 775

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 28/52 (53%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          P     V A AGSGKT  LV R+  L+     P  LL LT T+ AA EM+ R
Sbjct: 45 PPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMTAR 96


>gi|86742478|ref|YP_482878.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569340|gb|ABD13149.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1130

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +  T  +   A+ P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 53  VPYTDEQIAAATAPLEPGVIIAGAGSGKTSVMAARVVWLVATGQVRPDQVLGLTFTTKAA 112

Query: 76  AEMSHRV 82
           AE+S RV
Sbjct: 113 AELSGRV 119


>gi|30019376|ref|NP_831007.1| ATP-dependent DNA helicase [Bacillus cereus ATCC 14579]
 gi|229126637|ref|ZP_04255649.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-Cer4]
 gi|29894919|gb|AAP08208.1| ATP-dependent DNA helicase [Bacillus cereus ATCC 14579]
 gi|228656577|gb|EEL12403.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-Cer4]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|296130376|ref|YP_003637626.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109]
 gi|296022191|gb|ADG75427.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109]
          Length = 858

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL  + A    +L +T T  AAAEM  RV +++
Sbjct: 96  IVAGAGSGKTRVLTHRIAHLLATHRARAGEILAITFTNKAAAEMRERVEQLV 147


>gi|284045042|ref|YP_003395382.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283949263|gb|ADB52007.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 746

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 49/161 (30%)

Query: 23  EQLLA--SDPTRSAWVS--------ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           + LLA  ++P R A V         A AGSGKT +L  R+  L+    A P  +L +T T
Sbjct: 11  DALLAGLNEPQREAVVHGEGPLLILAGAGSGKTRVLTHRIAYLVGTGQARPDEILAITFT 70

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV            E+L    T+                           +
Sbjct: 71  NKAAQEMRERV------------EMLVGRRTR--------------------------AM 92

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            V T H+ C  +++        T  F I D+  +++L++ A
Sbjct: 93  WVMTFHSACARMLRADAHRLGYTRQFTIYDQSDARRLVKRA 133


>gi|228906962|ref|ZP_04070829.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           200]
 gi|228852710|gb|EEM97497.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           200]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|229177744|ref|ZP_04305118.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 172560W]
 gi|228605708|gb|EEK63155.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 172560W]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|206968634|ref|ZP_03229590.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           AH1134]
 gi|218232735|ref|YP_002366011.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus B4264]
 gi|229078522|ref|ZP_04211081.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock4-2]
 gi|229108789|ref|ZP_04238395.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
 gi|229149534|ref|ZP_04277766.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1550]
 gi|206737554|gb|EDZ54701.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           AH1134]
 gi|218160692|gb|ACK60684.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus B4264]
 gi|228633880|gb|EEK90477.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1550]
 gi|228674656|gb|EEL29894.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
 gi|228704747|gb|EEL57174.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock4-2]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|154495304|ref|ZP_02034309.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC
          43184]
 gi|154085228|gb|EDN84273.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC
          43184]
          Length = 770

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          E +  +++++ E ++ +D    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 3  EYLKQLNESQREAVVYTDG--PSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFT 60

Query: 72 KAAAAEMSHRV 82
            AA EM  R+
Sbjct: 61 NKAAREMKDRI 71


>gi|94264521|ref|ZP_01288308.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
 gi|93455080|gb|EAT05307.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
          Length = 771

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 28/52 (53%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          P     V A AGSGKT  LV R+  L+     P  LL LT T+ AA EM+ R
Sbjct: 45 PPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMTAR 96


>gi|306822220|ref|ZP_07455602.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679]
 gi|309802289|ref|ZP_07696397.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
 gi|304554602|gb|EFM42507.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679]
 gi|308221172|gb|EFO77476.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
          Length = 1346

 Score = 42.0 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+E+  RV
Sbjct: 27 VVAGAGSGKTYTMTRRIINLIEQGVSPERILGLTFTRKAASELLSRV 73


>gi|312194644|ref|YP_004014705.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225980|gb|ADP78835.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1243

 Score = 42.0 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71
           DL+    +E+ LA+   P     + A AGSGKT ++  RV+ L+     P+ ++L LT T
Sbjct: 84  DLLGVPYTEEQLAAICAPADPGVIVAGAGSGKTSVMAARVVWLVGHEQVPAESILGLTFT 143

Query: 72  KAAAAEMSHRV 82
           + AAAE++ R+
Sbjct: 144 RKAAAELNERI 154


>gi|260440441|ref|ZP_05794257.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2]
 gi|291043739|ref|ZP_06569455.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2]
 gi|291012202|gb|EFE04191.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2]
          Length = 671

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          +V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 20 FVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|228899910|ref|ZP_04064151.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           4222]
 gi|228859689|gb|EEN04108.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           4222]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|229095812|ref|ZP_04226791.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-29]
 gi|228687645|gb|EEL41544.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-29]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|218289482|ref|ZP_03493710.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240350|gb|EED07532.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 706

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           T+D ++  + E   A+       V A AGSGKT +L+ R+  L+     P  +L  T T+
Sbjct: 120 TLDQLNDAQREA--ATHKNGPCMVVAAAGSGKTAMLIARIQYLINQGVKPGDILACTFTR 177

Query: 73  AAAAEMSHRVLEII 86
            AA EM+ R+L  +
Sbjct: 178 KAAQEMTDRLLAAV 191


>gi|218896262|ref|YP_002444673.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus G9842]
 gi|228964277|ref|ZP_04125396.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218541534|gb|ACK93928.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus G9842]
 gi|228795374|gb|EEM42862.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|313674951|ref|YP_004052947.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126]
 gi|312941649|gb|ADR20839.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126]
          Length = 754

 Score = 42.0 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+ + N  P ++L LT T  AA EM  R+ +I+
Sbjct: 24 IIAGAGSGKTRVLTYRIAHLITVKNVDPFSILALTFTNKAAKEMRERIEKIV 75


>gi|228951708|ref|ZP_04113810.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807993|gb|EEM54510.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|323692617|ref|ZP_08106849.1| UvrD/REP helicase [Clostridium symbiosum WAL-14673]
 gi|323503314|gb|EGB19144.1| UvrD/REP helicase [Clostridium symbiosum WAL-14673]
          Length = 611

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
          A  GSGKT ++ QR+  L  + N +P+ +L +T T+AAA EM  R + +    S ++
Sbjct: 22 AGPGSGKTTVITQRIKYLTESLNINPADILVITFTRAAAEEMKERYIRLTGNASRVT 78


>gi|238922029|ref|YP_002935543.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
          eligens ATCC 27750]
 gi|238873701|gb|ACR73409.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
          eligens ATCC 27750]
          Length = 717

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
          E  + I+QT+    +AS P          GSGKT +L  R+  L+      PS+++ LT 
Sbjct: 26 EQTEAITQTEGNIRVASVP----------GSGKTFVLTYRIAYLITELFVEPSSIVALTF 75

Query: 71 TKAAAAEMSHRVLEII 86
          T  AA++M HR+  I+
Sbjct: 76 TNKAASQMKHRLRNIV 91


>gi|229101910|ref|ZP_04232624.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-28]
 gi|228681493|gb|EEL35656.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-28]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|323483653|ref|ZP_08089037.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
 gi|323403080|gb|EGA95394.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
          Length = 611

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
          A  GSGKT ++ QR+  L  + N +P+ +L +T T+AAA EM  R + +    S ++
Sbjct: 22 AGPGSGKTTVITQRIKYLTESLNINPADILVITFTRAAAEEMKERYIRLTGNASRVT 78


>gi|237807954|ref|YP_002892394.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237500215|gb|ACQ92808.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 1013

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 28  SDPTRSAWVS--------ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
           S P R A V+        A AG+GKT  ++ +   LL +  A P  +L L     AA EM
Sbjct: 214 SQPQRQACVTEEDHTLVVAGAGTGKTSTIIGKAGYLLHSGLAEPDNILLLAFGNKAAGEM 273

Query: 79  SHRV-LEIITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILET 127
           + R+ L +  A + +      A     + +IQGKKP  +  ++ +  L   +ET
Sbjct: 274 TERIALRLPEAHARIRATTFHAFGNQIMAEIQGKKPTLTRFAEQKEELRKFIET 327


>gi|218528416|ref|YP_002419232.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
 gi|218520719|gb|ACK81304.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
          Length = 795

 Score = 42.0 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 12  ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           E    +S    EQ  A + T     V A AG+GKT +L  R+  L+    A P  +L +T
Sbjct: 39  EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98

Query: 70  HTKAAAAEMSHRV 82
            T  AA EM HR+
Sbjct: 99  FTNKAAREMKHRI 111


>gi|75758386|ref|ZP_00738509.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74494112|gb|EAO57205.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  R+  LL     P  +L +T T  +A EM  RV
Sbjct: 30 VLAGAGSGKTKVLTTRIAYLLQQGVDPWRILAITFTNKSAKEMKERV 76


>gi|189500494|ref|YP_001959964.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
 gi|189495935|gb|ACE04483.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
          Length = 1054

 Score = 42.0 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 31/139 (22%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           ++SA AGSGKT  L + +   LL   A P  ++  T TK AAAE+  RV  ++       
Sbjct: 8   FISAGAGSGKTTRLTEILAEQLLDREAEPDGIIATTFTKKAAAELKERVRSMLL------ 61

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                         + N+ D++      ++I E     ++ T+++ C  ++++F  E  +
Sbjct: 62  --------------EKNRQDLA------VSIAEA----QIGTVNSVCGGLLKRFAFELGL 97

Query: 154 TSHFAIADEEQSKKLIEEA 172
           T    + DE  + + +  A
Sbjct: 98  TMEQKVIDEHAAMERLSRA 116


>gi|329904285|ref|ZP_08273751.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
          IMCC9480]
 gi|327548042|gb|EGF32776.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT +L +RV R L+ N     ++ LT T  AA EM  R+ ++
Sbjct: 22 VLAAAGSGKTRVLTERV-RYLIENTRKDGVIALTFTNKAAEEMQTRLADL 70


>gi|229114763|ref|ZP_04244177.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-3]
 gi|228668828|gb|EEL24256.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-3]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|186476506|ref|YP_001857976.1| exodeoxyribonuclease V subunit beta [Burkholderia phymatum STM815]
 gi|184192965|gb|ACC70930.1| exodeoxyribonuclease V, beta subunit [Burkholderia phymatum STM815]
          Length = 1241

 Score = 42.0 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV----LEIITAWS 90
           + A+AG+GKT  +    +RLLL  N     +L +T TKAA AE+  R+     E+  A  
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLSADQILVVTFTKAATAELHERIRGRLAEVQRAIE 87

Query: 91  HLSD-------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
              D        +    +++ +G      D+  A  ++   L T     + TIHAFC+  
Sbjct: 88  TGDDGGDPFIIRLFETTLSEARG-----VDLEAAAKIVRRALRTFDQAAIHTIHAFCQRA 142

Query: 144 MQQ 146
           +Q+
Sbjct: 143 LQE 145


>gi|283782861|ref|YP_003373615.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
           409-05]
 gi|283441838|gb|ADB14304.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
           409-05]
          Length = 1023

 Score = 42.0 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+ ++I
Sbjct: 161 IGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFTNKAAAEMRERLSKLI 212


>gi|219871763|ref|YP_002476138.1| exodeoxyribonuclease V subunit beta [Haemophilus parasuis SH0165]
 gi|219691967|gb|ACL33190.1| exodeoxyribonuclease V, beta subunit [Haemophilus parasuis
          SH0165]
          Length = 1195

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL-----LCLTHTKAAAAEMSHRVLE 84
           +S+ + A+AG+GKT+ +    LRL+L    PS L     L +T TKAA  E+  R+ E
Sbjct: 12 NQSSLIEASAGTGKTYTMANLYLRLILGVRCPSPLTVEQILVVTFTKAATQELRDRIRE 70


>gi|207108775|ref|ZP_03242937.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Helicobacter pylori HPKX_438_CA4C1]
          Length = 297

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
          V A+AG+GKT  +V R+L LL     P  +L LT T  A+ EM  RV      +S LS +
Sbjct: 18 VIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARV----AKYSKLSSK 73

Query: 96 I 96
          I
Sbjct: 74 I 74


>gi|168703681|ref|ZP_02735958.1| ATP-dependent DNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 755

 Score = 42.0 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT ++ +RV  LL A      +L +T T  AA EM +RV
Sbjct: 28 ILAGAGSGKTRVITRRVAYLLRAGVRAHNILAITFTNKAAGEMKNRV 74


>gi|119715745|ref|YP_922710.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536406|gb|ABL81023.1| UvrD/REP helicase [Nocardioides sp. JS614]
          Length = 1073

 Score = 42.0 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          S P   A V A AGSGKT ++  RV+ L++     P  +L LT T  AA+E+  R+ + +
Sbjct: 30 SAPLAPAVVIAGAGSGKTTLMAARVVYLVVTGQVRPDEVLGLTFTTKAASELRQRIRQAL 89

Query: 87 TAWSHLSD 94
           A   L +
Sbjct: 90 KAAGALEE 97


>gi|89076421|ref|ZP_01162746.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34]
 gi|89047889|gb|EAR53482.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34]
          Length = 1203

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +V   LRLLL + +             +L +T T+AA AE+  R+ + 
Sbjct: 23  IEASAGTGKTFTIVSLYLRLLLGHGNDDCAHLKPLDVDQILVVTFTEAATAELRDRIRKG 82

Query: 86  I-TAWSHLS-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I  A+   S  E +      I     +  D   A  +L           V TIH FC+ +
Sbjct: 83  IRDAYVSFSRGESVGPFKDTISALLNDIHDHKYAARVLKDAERRMDEASVYTIHGFCQRM 142

Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLI 169
           + Q   E+     + F + DE Q K L+
Sbjct: 143 LTQNAFESGCRFNNEF-VTDESQLKNLV 169


>gi|300932820|ref|ZP_07148076.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 1224

 Score = 42.0 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78
           +  Q++ + P+ +  V A AG+GKT  +  RV+  L+AN +  P  +L LT T+ AA+E+
Sbjct: 40  QQAQVIGAKPSGAYLVVAGAGAGKTETMAARVV-WLVANGYVRPEQVLGLTFTRKAASEL 98

Query: 79  SHRV 82
           + RV
Sbjct: 99  AQRV 102


>gi|210635292|ref|ZP_03298488.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279]
 gi|210158453|gb|EEA89424.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279]
          Length = 1197

 Score = 42.0 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 49/163 (30%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPS-----------------TLLCLTHTKAAAAE 77
           +VSA AGSGKT  L QR++  L   + P                   +L +T T+ AA E
Sbjct: 22  FVSAGAGSGKTFTLTQRIMYALRPGSKPQGQWADPQVPEPFLDSIDQVLAITFTEKAAEE 81

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+       + L DE + AE  K+                            + TIH
Sbjct: 82  LKERIR------AALIDEGMDAEAAKVDNA------------------------WISTIH 111

Query: 138 AFCEAIMQQFPLEANITSHFAIAD--EEQSKKLIEEAKKSTLA 178
             C  I++   L+  +   F +A+  E+  +  +E   +  +A
Sbjct: 112 GMCSRIIRAHALDLGLDPAFGVAEYAEDLKRAAVEHVLRRAIA 154


>gi|42524707|ref|NP_970087.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39576917|emb|CAE78146.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 762

 Score = 42.0 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 41/157 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++      S  +LC+T T  AA EM HR+ +I+        
Sbjct: 28  ILAGAGSGKTRVLTHRMANMIGQGVAASDEILCVTFTNKAAKEMEHRIYKIL-------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                            SDM         +++T   L + T H+FC  +++Q     +  
Sbjct: 80  -----------------SDMG-------AVVQTQ--LWISTFHSFCVRVLRQHITLLDYK 113

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
             F I D   S   + + KK   A   LD N+++  A
Sbjct: 114 PFFGIYD---SSDQLSQIKKVMTA---LDINDKMYPA 144


>gi|189346089|ref|YP_001942618.1| UvrD/REP helicase [Chlorobium limicola DSM 245]
 gi|189340236|gb|ACD89639.1| UvrD/REP helicase [Chlorobium limicola DSM 245]
          Length = 741

 Score = 42.0 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  L+  N   P  +L LT T  AA EM HR+ +++ + S
Sbjct: 25 VLAGAGSGKTRVITYRIAHLIRNNGVTPYNILALTFTNKAAGEMRHRIDKLLQSGS 80


>gi|289641103|ref|ZP_06473271.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca
           glomerata]
 gi|289509044|gb|EFD29975.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca
           glomerata]
          Length = 822

 Score = 42.0 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  LL A       +L +T T  AA EM  RV  ++ A +    
Sbjct: 71  VVAGAGSGKTRVLTNRIAYLLAARGVRAGEILAITFTNKAANEMKERVAALVGARTR--- 127

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I++        T
Sbjct: 128 -----------------------------------AMWVSTFHSACVRILRSHAKRIGFT 152

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D   +++LI
Sbjct: 153 SGFSIYDAADAQRLI 167


>gi|94311565|ref|YP_584775.1| ATP-dependent DNA helicase UvrD [Cupriavidus metallidurans CH34]
 gi|93355417|gb|ABF09506.1| DNA-dependent ATPase I and helicase II [Cupriavidus metallidurans
          CH34]
          Length = 787

 Score = 42.0 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
          L++   +EQL A + P   A + A AGSGKT +L  R+  L+      P+ +L +T T  
Sbjct: 4  LLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  R+  ++
Sbjct: 64 AAKEMQTRLSSML 76


>gi|257465356|ref|ZP_05629727.1| exodeoxyribonuclease V beta chain [Actinobacillus minor 202]
 gi|257451016|gb|EEV25059.1| exodeoxyribonuclease V beta chain [Actinobacillus minor 202]
          Length = 1204

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 27/141 (19%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRVL 83
           S+ + A+AG+GKTH +    LRLLL   H  +         +L +T TKAA  E+  R+ 
Sbjct: 16  SSLIEASAGTGKTHTIKNLYLRLLLGLGHDKSAFQPLTVAQILVVTFTKAATEELRERIR 75

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDM---------SKARHLL-ITILETPGGL-K 132
           E I A      E LS       GK+    D          +K   LL + I E    L  
Sbjct: 76  ENIQACYTFFQERLS-------GKETQSDDFFEQLFEQVENKEEALLRLRIAEREIDLAS 128

Query: 133 VQTIHAFCEAIMQQFPLEANI 153
           V TIH+FC+ ++ QF  ++ +
Sbjct: 129 VFTIHSFCQKMLFQFAFDSGV 149


>gi|229166170|ref|ZP_04293930.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH621]
 gi|228617268|gb|EEK74333.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH621]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115


>gi|289167909|ref|YP_003446178.1| exonuclease RexA [Streptococcus mitis B6]
 gi|288907476|emb|CBJ22313.1| exonuclease RexA [Streptococcus mitis B6]
          Length = 1216

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     SD+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQESDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|261391767|emb|CAX49221.1| DNA helicase II [Neisseria meningitidis 8013]
          Length = 735

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|229132128|ref|ZP_04260987.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST196]
 gi|228651348|gb|EEL07324.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST196]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115


>gi|153806228|ref|ZP_01958896.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185]
 gi|149130905|gb|EDM22111.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185]
          Length = 1056

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +       D+ 
Sbjct: 9   ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQTGDKG 67

Query: 97  LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E  ++
Sbjct: 68  SEAYLNRIKEETGKTEQEIREAASIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127

Query: 155 SHFAI 159
            +  I
Sbjct: 128 PNLNI 132


>gi|229010620|ref|ZP_04167821.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides DSM 2048]
 gi|228750664|gb|EEM00489.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides DSM 2048]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115


>gi|229016581|ref|ZP_04173520.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1273]
 gi|229022789|ref|ZP_04179313.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1272]
 gi|228738601|gb|EEL89073.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1272]
 gi|228744668|gb|EEL94731.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1273]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|162448187|ref|YP_001621319.1| DNA helicase II [Acholeplasma laidlawii PG-8A]
 gi|161986294|gb|ABX81943.1| DNA helicase II [Acholeplasma laidlawii PG-8A]
          Length = 703

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          +V A AG+GKT  L  R+  L+      P ++L +T T  AA EM  R++E+   ++
Sbjct: 26 FVVAGAGTGKTRTLTTRIAYLIEELGVAPDSILAVTFTNKAAREMKERIVEMAGPYA 82


>gi|163939126|ref|YP_001644010.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
 gi|163861323|gb|ABY42382.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115


>gi|302668932|ref|YP_003832757.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302397272|gb|ADL36175.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 924

 Score = 42.0 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 7   FQEHSETIDLIS-QTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST 64
            +E + T D+ + +    Q  A + T   W ++A AG+GKT +   RV  LL     P  
Sbjct: 280 LEEEASTKDISNLKLTQAQTAAVNVTNGFWRINAGAGAGKTMVTALRVWNLLNQGVRPEE 339

Query: 65  LLCLTHTKAAAAEMSHRV 82
           +L +T T A A EM  R+
Sbjct: 340 ILLITFTNAGAKEMRDRI 357


>gi|261378597|ref|ZP_05983170.1| DNA helicase II [Neisseria cinerea ATCC 14685]
 gi|269144930|gb|EEZ71348.1| DNA helicase II [Neisseria cinerea ATCC 14685]
          Length = 735

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|171058460|ref|YP_001790809.1| exodeoxyribonuclease V subunit beta [Leptothrix cholodnii SP-6]
 gi|170775905|gb|ACB34044.1| exodeoxyribonuclease V, beta subunit [Leptothrix cholodnii SP-6]
          Length = 1272

 Score = 42.0 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 18/137 (13%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAH-------------PSTLLCLTHTKAAAAEMS 79
           S  + A+AG+GKT  +    LRL+L +               P+ +L +T T+AA  E+S
Sbjct: 14  SHLIEASAGTGKTWTIAALYLRLVLGHGERESVDSPLPRPLLPAEILVMTFTRAATRELS 73

Query: 80  HRVLE-IITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            R+ E +I A      E   A     +  ++   P +++   A + L    E      V 
Sbjct: 74  DRIRERLIEAARCFRGEAEPAPHDHFLRDLRADYPGEAERRDAAYRLALAAEGMDDAAVH 133

Query: 135 TIHAFCEAIMQQFPLEA 151
           TI A+C+ ++++   ++
Sbjct: 134 TIDAWCQRMLREHAFDS 150


>gi|298253336|ref|ZP_06977128.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
 gi|297532731|gb|EFH71617.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
          Length = 978

 Score = 41.6 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+ ++I
Sbjct: 139 IGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFTNKAAAEMRERLSKLI 190


>gi|154148234|ref|YP_001406664.1| ATP-dependent DNA helicase PcrA [Campylobacter hominis ATCC
          BAA-381]
 gi|153804243|gb|ABS51250.1| ATP-dependent DNA helicase PcrA [Campylobacter hominis ATCC
          BAA-381]
          Length = 686

 Score = 41.6 bits (96), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           ++++L A+       + A AGSGKT  +  R+  LL     P++ L LT T  AA+EM 
Sbjct: 8  NENQKLAATHIDGPMLILAGAGSGKTKTITSRLAYLLSNGVDPASTLTLTFTNKAASEMR 67

Query: 80 HRVLEII 86
           R   +I
Sbjct: 68 LRAYSLI 74


>gi|78223920|ref|YP_385667.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
 gi|78195175|gb|ABB32942.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
          Length = 678

 Score = 41.6 bits (96), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE---------- 84
           V A AGSGKT ++  R+  LLL        +L +T T  AA EM  RV E          
Sbjct: 24  VLAGAGSGKTRVITYRIGHLLLDKKVKAEDILAVTFTNKAAGEMKERVRELVGRGKAKGM 83

Query: 85  IITAWSHLSDEILSAEITKIQGKK 108
           +I+ +  L   IL  +I ++  KK
Sbjct: 84  VISTFHSLGVRILRRDIERLGYKK 107


>gi|319902330|ref|YP_004162058.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108]
 gi|319417361|gb|ADV44472.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108]
          Length = 1104

 Score = 41.6 bits (96), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 20/142 (14%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-WSH--LS 93
           A+AGSGKT  L    ++ L+ N H    +L +T T  A AEM  R+L+ +   W     S
Sbjct: 8   ASAGSGKTFTLAVEYIKHLIQNPHAYRQILAVTFTNKATAEMKERILQQLYGIWKGDPAS 67

Query: 94  DEILSAEITKIQGKKPNKSDM----------------SKARHLLITILETPGGLKVQTIH 137
           D  LS     +  +K N S+                  +A   L  +L      +V+TI 
Sbjct: 68  DAYLSRIKEDLGKRKDNLSETEVISPFTAGSEDEELRKRAGMALQYMLHDYSRFRVETID 127

Query: 138 AFCEAIMQQFPLEANITSHFAI 159
           +F +++M+    E  ++ +  I
Sbjct: 128 SFFQSVMRNLARELELSPNLNI 149


>gi|289523886|ref|ZP_06440740.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502542|gb|EFD23706.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 1191

 Score = 41.6 bits (96), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 12/138 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT  L  R   L+    A    +L +T T+ AA EM  ++L  +  W +   
Sbjct: 33  VSAGAGSGKTRTLSWRFAWLVATGRARHDEILTITFTEKAAQEMEDKILSTLGDWLN--- 89

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            + S+ +++ +     + D  K   L  +  +     ++ TIH+F   +++ +     I+
Sbjct: 90  AVRSSNLSRQK-----REDTEKRLELACSRFDEA---QISTIHSFAMNLLKSYSQFLEIS 141

Query: 155 SHFAIADEEQSKKLIEEA 172
             F I   +Q     + A
Sbjct: 142 PAFNIVTPQQEDLFYQSA 159


>gi|269302561|gb|ACZ32661.1| ATP-dependent DNA helicase pcrA [Chlamydophila pneumoniae LPCoLN]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          P     V A AG+GKT ++  R+L L+     P  +L +T T  AA E+  R++
Sbjct: 18 PLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAARELKERIV 71


>gi|262038007|ref|ZP_06011419.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264]
 gi|261747960|gb|EEY35387.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264]
          Length = 733

 Score = 41.6 bits (96), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           ++ +  SEQ  A++ T     + A AGSGKT  +  R+  ++      P  +L LT T  
Sbjct: 3   ILDELNSEQKKAAEKTEGPILILAGAGSGKTRTVTYRIAHMIKEIGISPMNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R   +I A S+                                       L V
Sbjct: 63  AAREMKERAEALIGADSY--------------------------------------NLVV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+F   +++ +        +F I D +  K +I + KK 
Sbjct: 85  STFHSFSVKLLKTYADRIGFGRNFNIYDVDDQKSIITKIKKD 126


>gi|254819357|ref|ZP_05224358.1| ATP-dependent DNA helicase PcrA [Mycobacterium intracellulare ATCC
           13950]
          Length = 780

 Score = 41.6 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAEM  RV+ ++        
Sbjct: 38  IVAGAGSGKTAVLTRRIAYLIAARGVGVGQVLAITFTNKAAAEMRERVVRLVG------- 90

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                               ++AR            + V T H+ C  I++ Q  L   +
Sbjct: 91  --------------------NRAR-----------AMWVSTFHSTCVRILRNQASLIEGL 119

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 120 NSNFSIYDADDSRRLLQ 136


>gi|225010856|ref|ZP_03701324.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
 gi|225005064|gb|EEG43018.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
          Length = 773

 Score = 41.6 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM HR+  I+
Sbjct: 25 VIAGAGSGKTRVLTIRIAHLMSLGVDSFNILALTFTNKAAREMKHRISSIV 75


>gi|242310535|ref|ZP_04809690.1| ATP-dependent helicase [Helicobacter pullorum MIT 98-5489]
 gi|239522933|gb|EEQ62799.1| ATP-dependent helicase [Helicobacter pullorum MIT 98-5489]
          Length = 676

 Score = 41.6 bits (96), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          P+    V A+AG+GKT  +V R+  LL +   P+ +L LT T  AA EM  R+
Sbjct: 17 PSGYNLVIASAGTGKTSTIVGRISHLLESGITPNEILLLTFTNKAAQEMLARL 69


>gi|325570044|ref|ZP_08145969.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156872|gb|EGC69043.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC
           12755]
          Length = 785

 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           A AGSGKT +L  R+  L+   N +P  +L +T T  AA EM  RV +++ +
Sbjct: 68  AGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVSQLLGS 119


>gi|294339627|emb|CAZ87986.1| DNA helicase II [Thiomonas sp. 3As]
          Length = 781

 Score = 41.6 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          LI Q   EQ  A + P  +A + A AGSGKT +L  R+  L+      P+ +L +T T  
Sbjct: 4  LIQQLNPEQRAAVTLPAENALILAGAGSGKTRVLTTRIAWLISTGQVTPAGILAVTFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 64 AAKEMMARL 72


>gi|90580937|ref|ZP_01236738.1| putative exodeoxyribonuclease V [Vibrio angustum S14]
 gi|90437815|gb|EAS63005.1| putative exodeoxyribonuclease V [Vibrio angustum S14]
          Length = 1203

 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +V   LRLLL + +             +L +T T+AA AE+  R+ + 
Sbjct: 23  IEASAGTGKTFTIVSLYLRLLLGHGNDDCAHLKPLDVDQILVVTFTEAATAELRDRIRKG 82

Query: 86  I-TAWSHLS-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I  A+   S  E +      I     +  D   A  +L           V TIH FC+ +
Sbjct: 83  IRDAYVSFSRGESVGPFKDTISALLNDIHDHKYAARVLKDAERRMDEASVYTIHGFCQRM 142

Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLI 169
           + Q   E+     + F + DE Q K L+
Sbjct: 143 LTQNAFESGCRFNNEF-VTDESQLKNLV 169


>gi|33860862|ref|NP_892423.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33633804|emb|CAE18763.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 802

 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  N+  P  +L +T T  AA EM  R L++         
Sbjct: 29  VVAGAGSGKTKALTHRIANLIENNSVDPHNILAVTFTNKAAKEMKAR-LQV--------- 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+ EI   Q  +P  +     ++ L T +  E    L + T HA    +++      Q
Sbjct: 79  -LLAQEIALNQFGQPWSTLKEFDQNQLRTNIDQERLRDLWIGTFHALFSRLLRYDIEKYQ 137

Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171
            P     T  F+I DE  S+ L++E
Sbjct: 138 DPEGLTWTRQFSIYDETDSQTLVKE 162


>gi|88802827|ref|ZP_01118354.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
 gi|88781685|gb|EAR12863.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
          Length = 773

 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L+        +L LT T  AA EM  R+  ++
Sbjct: 27 AGAGSGKTRVLTYRIAHLMKQGVDSFNILSLTFTNKAAKEMKKRIASVV 75


>gi|330813748|ref|YP_004357987.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp.
          IMCC9063]
 gi|327486843|gb|AEA81248.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp.
          IMCC9063]
          Length = 744

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  RV  L+ +     + +LC+T T  AA EM  RV  ++  
Sbjct: 33 AGAGSGKTKVLTTRVTHLIQSKKCFSNQILCVTFTNKAANEMRERVQGLVVG 84


>gi|320095790|ref|ZP_08027434.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977274|gb|EFW08973.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 1196

 Score = 41.6 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRV 82
          P R   V A AGSGKT  +  RVL  L+AN     PS++L LT T+ AA E+  R+
Sbjct: 44 PRRPLLVVAGAGSGKTETMSMRVL-WLVANHEDIAPSSVLGLTFTRKAAGELGDRL 98


>gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
 gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
          Length = 862

 Score = 41.6 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 40/184 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
           + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM 
Sbjct: 5   REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  ++ +                    P K+                  +++ T H+F
Sbjct: 65  DRIQSLVGS--------------------PAKA------------------VEISTFHSF 86

Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++QQ       + +   I DEE  K+L E  +   L  +   N   + K +  +   
Sbjct: 87  CFFVLQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANIIGMVKEYRSLYGF 146

Query: 199 SNDE 202
            +D+
Sbjct: 147 YSDD 150


>gi|237709818|ref|ZP_04540299.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455911|gb|EEO61632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 796

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL     P ++L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNKAAREMKERI 71


>gi|229056964|ref|ZP_04196359.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH603]
 gi|228720353|gb|EEL71927.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH603]
          Length = 688

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115


>gi|227543585|ref|ZP_03973634.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A]
 gi|300909386|ref|ZP_07126847.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112]
 gi|227186425|gb|EEI66496.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A]
 gi|300893251|gb|EFK86610.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112]
          Length = 757

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT +L  RV  L+  N   P  +L +T T  AA EM  RV ++         
Sbjct: 28  VMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIW 87

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITI 124
           ++ +  L   IL  +I KI   +    +D S+ R L+  I
Sbjct: 88  VSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRI 127


>gi|33242131|ref|NP_877072.1| hypothetical protein CpB0800 [Chlamydophila pneumoniae TW-183]
 gi|33236641|gb|AAP98729.1| UvrD [Chlamydophila pneumoniae TW-183]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          P     V A AG+GKT ++  R+L L+     P  +L +T T  AA E+  R++
Sbjct: 18 PLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAARELKERIV 71


>gi|15965897|ref|NP_386250.1| DNA helicase II protein [Sinorhizobium meliloti 1021]
 gi|307308207|ref|ZP_07587916.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
 gi|307319674|ref|ZP_07599099.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|15075166|emb|CAC46723.1| Probable DNA helicase II [Sinorhizobium meliloti 1021]
 gi|306894605|gb|EFN25366.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|306901205|gb|EFN31811.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
          Length = 857

 Score = 41.6 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
           ++ ++  D +S    EQ  A +       V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 35  RDKAQRPDYVSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQI 94

Query: 66  LCLTHTKAAAAEMSHRV 82
           L +T T  AA EM  R+
Sbjct: 95  LAVTFTNKAAREMKERI 111


>gi|315604922|ref|ZP_07879980.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313461|gb|EFU61520.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 1138

 Score = 41.6 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKAAA 75
          + T  +  +   P R   V A AGSGKT  +  RVL LL    +  P+++L LT T+ AA
Sbjct: 17 TPTPEQVRVVESPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLTPASILGLTFTRKAA 76

Query: 76 AEMSHRV 82
           E+  R+
Sbjct: 77 GELGDRL 83


>gi|289178716|gb|ADC85962.1| PcrA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 1037

 Score = 41.6 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 166 IGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTNKAAAEMRERLGALI 217


>gi|260654704|ref|ZP_05860194.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
 gi|260630720|gb|EEX48914.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
          Length = 1181

 Score = 41.6 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 16/120 (13%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+   R   VSA AG+GKT  L  R L  +   A   ++L LT T+ AA EM  R+  + 
Sbjct: 31  ATSSERLTVVSAGAGTGKTWTLAWRFLWCMAQGAPAPSILTLTFTEKAAEEMRSRIAALT 90

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              +  + E     ++++         +++ R  L +         + TIH FC  ++++
Sbjct: 91  EGVARQAKEAGCVRLSEV---------LNEGRRCLDSAY-------ISTIHGFCLRVIKE 134


>gi|255066057|ref|ZP_05317912.1| DNA helicase II [Neisseria sicca ATCC 29256]
 gi|255049602|gb|EET45066.1| DNA helicase II [Neisseria sicca ATCC 29256]
          Length = 736

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|229097011|ref|ZP_04227979.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
 gi|228686407|gb|EEL40317.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
          Length = 1028

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 33/171 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           T +  ++A AG+GKT++++ R+  LL         ++ +T T A+  EM  R        
Sbjct: 316 TDNLMITAGAGTGKTYVMIDRIFYLLEKVGITLKDIIMVTFTNASTNEMKER-------- 367

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L  ++LS  + K+ G         K ++L     E    +++ TIHAF ++I+ Q   
Sbjct: 368 --LQKKLLS--MFKLTG---------KTKYLYFA--EEVKNIQISTIHAFSKSILTQLAH 412

Query: 150 EANITSHFAIADEEQSK-----KLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           E     +  +    ++K     KL  E  +   A +++D    L   FYE+
Sbjct: 413 EIGFGRNLKVRSFIKTKSDILEKLANEFFQKHPAKVLVD----LNLKFYEV 459


>gi|171059448|ref|YP_001791797.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
 gi|170776893|gb|ACB35032.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
          Length = 848

 Score = 41.6 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           LA++P   A + A AGSGKT +L  R+  LL      P  L+ +T T  AA EM HR+
Sbjct: 62  LAAEP---ALILAGAGSGKTRVLTTRIAWLLQTGQIGPGGLMAVTFTNKAAKEMVHRL 116


>gi|194466913|ref|ZP_03072900.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23]
 gi|194453949|gb|EDX42846.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23]
          Length = 757

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT +L  RV  L+  N   P  +L +T T  AA EM  RV ++         
Sbjct: 28  VMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIW 87

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITI 124
           ++ +  L   IL  +I KI   +    +D S+ R L+  I
Sbjct: 88  VSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRI 127


>gi|319778234|ref|YP_004129147.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis
           MCE9]
 gi|317108258|gb|ADU91004.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis
           MCE9]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 43/152 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+    A P  +L +T T  AA EM  R+ + I        
Sbjct: 26  VLAGAGSGKTKVLTTRIAWLVQQGIATPERILAVTFTNKAAKEMMERIGKYIPV------ 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P  L V T H+ C  I++    E  + 
Sbjct: 80  --------------------------------NPKSLWVGTFHSICHRILRAHHKEVGLP 107

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           + F I D    K ++    K  L S+ LD+++
Sbjct: 108 AAFQILDMADQKSML----KRILKSMKLDDDK 135


>gi|239816452|ref|YP_002945362.1| pyridoxal-5'-phosphate-dependent protein subunit beta [Variovorax
           paradoxus S110]
 gi|239803029|gb|ACS20096.1| Pyridoxal-5'-phosphate-dependent protein beta subunit [Variovorax
           paradoxus S110]
          Length = 358

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           AW+   AG+G T   + R LR    +    T +C+   + +          + +A+    
Sbjct: 191 AWIVVGAGTGGTSATIGRYLRYRCHD----TQVCVPDPEGS----------VFSAYHRSG 236

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP--LEA 151
           D  L+A  ++I+G    + + S  R L+  ++E P    V  +HA    + ++       
Sbjct: 237 DATLTAAGSRIEGIGRPRVEPSFIRSLVDRMIEVPNLDSVAAMHALSALLGRKVGPSTGT 296

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           N     AIA E ++       ++ ++ S++ D  E    ++++   + N
Sbjct: 297 NFVGMLAIAGEMRAA-----GRQGSILSLLCDAGERYLPSYHDAAWVQN 340


>gi|15605371|ref|NP_220157.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis D/UW-3/CX]
 gi|237803068|ref|YP_002888262.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804989|ref|YP_002889143.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311463|ref|ZP_05354033.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 6276]
 gi|255317764|ref|ZP_05359010.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 6276s]
 gi|255349024|ref|ZP_05381031.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 70]
 gi|255503563|ref|ZP_05381953.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 70s]
 gi|8134452|sp|O84645|EX5B_CHLTR RecName: Full=Exodeoxyribonuclease V beta chain
 gi|3329087|gb|AAC68243.1| Exodeoxyribonuclease V, Beta [Chlamydia trachomatis D/UW-3/CX]
 gi|231273289|emb|CAX10204.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274302|emb|CAX11097.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296437105|gb|ADH19275.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/11222]
 gi|297748769|gb|ADI51315.1| Exodeoxyribonuclease V beta chain [Chlamydia trachomatis D-EC]
 gi|297749649|gb|ADI52327.1| Exodeoxyribonuclease V beta chain [Chlamydia trachomatis D-LC]
          Length = 1026

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q VLR LL  +   T  +L +T T AA  E+  R+   +     L
Sbjct: 18  FLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148
             + LS   T +       S  +K + L + I   L T   + + TIH FC   ++Q FP
Sbjct: 78  FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135


>gi|121603267|ref|YP_980596.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120592236|gb|ABM35675.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 709

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  ++ RL+     P  +  +T T  AAAEM  R   +I
Sbjct: 31 VLAGAGSGKTRVITHKIGRLIQMGMKPEQIAAITFTNKAAAEMRERAKSLI 81


>gi|75762299|ref|ZP_00742182.1| ATP-dependent DNA helicase , uvrD-rep family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74490222|gb|EAO53555.1| ATP-dependent DNA helicase , uvrD-rep family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 688

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115


>gi|253568515|ref|ZP_04845926.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6]
 gi|251842588|gb|EES70668.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6]
          Length = 788

 Score = 41.6 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 37/139 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+             
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI------------- 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                          +  M +AR+L +            T H+    I++        TS
Sbjct: 73  -------------ARQVGMERARYLWMG-----------TFHSVFSRILRAEAKYIGFTS 108

Query: 156 HFAIADEEQSKKLIEEAKK 174
            F I D   SK LI    K
Sbjct: 109 QFTIYDSADSKSLIRSIIK 127


>gi|152992778|ref|YP_001358499.1| ATP-dependent DNA helicase UvrD [Sulfurovum sp. NBC37-1]
 gi|151424639|dbj|BAF72142.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
          NBC37-1]
          Length = 689

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S   +EQL A+  +     + A+AG+GKT  +V R+  LL     PS +L LT T  AA
Sbjct: 3  LSTLNAEQLSAATASLGQNLIIASAGTGKTSTIVGRIAHLLNEGTDPSKILLLTFTNKAA 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 GEMIARL 69


>gi|67924839|ref|ZP_00518236.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501]
 gi|67853326|gb|EAM48688.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501]
          Length = 772

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 24/182 (13%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           +++ +SQ    Q +A +       V A AGSGKT  L  R+  L+      P ++L +T 
Sbjct: 4   SVNFLSQLNPSQRIAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETP 128
           T  AA EM  R+           + + + E+   Q  +P  S  +  + R L     +T 
Sbjct: 64  TNKAAREMKDRL-----------ERLFAQEMALKQQGQPFNSLPEYDQKRLLSQVYKKTT 112

Query: 129 GGLKVQTIHAFCEAIMQ------QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             L + T H+ C  I++      Q   +     +F+I DE   + L+   K   L    L
Sbjct: 113 KKLWIGTFHSLCARILRYDVNKYQDEKKRQWERNFSIFDESDVQSLV---KNIVLKQFNL 169

Query: 183 DN 184
           D+
Sbjct: 170 DD 171


>gi|332177326|gb|AEE13016.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707]
          Length = 789

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 37/141 (26%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           A V A AGSGKT ++  ++  L+    +P  L  LT T  AA EM  RV ++      L 
Sbjct: 22  ALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTNKAAGEMRSRVSDM------LG 75

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           + I                                  L++ T HA C  I++++      
Sbjct: 76  ESIAYR-------------------------------LRMGTFHAICGRILRRYAPLLGY 104

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           +  ++I D   +K LI    K
Sbjct: 105 SQDYSIYDTSDTKALIRNCIK 125


>gi|304408643|ref|ZP_07390264.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183]
 gi|307305472|ref|ZP_07585220.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175]
 gi|304352464|gb|EFM16861.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183]
 gi|306911775|gb|EFN42200.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175]
          Length = 1273

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    LRLLL +   + L C     +T T AA  E+  R+   I 
Sbjct: 29  SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 L   I    +  +    P +S+ + A       L++     + TIH FC+ I+ 
Sbjct: 89  VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 148 DLAFESSLLFESDFTLDDSE 167


>gi|300697919|ref|YP_003748580.1| atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CFBP2957]
 gi|299074643|emb|CBJ54200.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CFBP2957]
          Length = 710

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  L  RV  L+   A P  +L LT ++ AA+E+S R   ++         
Sbjct: 45  VLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLA-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                   +QG   N    S A     T L   G     T H     +++++     +  
Sbjct: 97  ------RAMQG---NTGTRSAAGTTYQTALPWAG-----TFHGIGARLLREYADRIGLAP 142

Query: 156 HFAIADEEQSKKLI 169
            F I D   S  L+
Sbjct: 143 DFTIHDRSDSADLL 156


>gi|282858133|ref|ZP_06267328.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455]
 gi|282584055|gb|EFB89428.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455]
          Length = 658

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT +L  ++  L+ A N  P  +L +T T  AA EMS RV +++  
Sbjct: 28 VLAGAGSGKTRVLTSKIAWLIAAQNVKPWRVLAVTFTNKAAREMSERVEKLLGG 81


>gi|15618681|ref|NP_224967.1| DNA helicase [Chlamydophila pneumoniae CWL029]
 gi|15836305|ref|NP_300829.1| DNA helicase [Chlamydophila pneumoniae J138]
 gi|16752269|ref|NP_445637.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39]
 gi|4377080|gb|AAD18910.1| DNA Helicase [Chlamydophila pneumoniae CWL029]
 gi|7190013|gb|AAF38869.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39]
 gi|8979145|dbj|BAA98980.1| DNA helicase [Chlamydophila pneumoniae J138]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          P     V A AG+GKT ++  R+L L+     P  +L +T T  AA E+  R++
Sbjct: 18 PLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAARELKERIV 71


>gi|126090202|ref|YP_001041683.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155]
 gi|126174495|ref|YP_001050644.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS155]
 gi|125997700|gb|ABN61775.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS155]
 gi|125999858|gb|ABN63928.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155]
          Length = 1273

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    LRLLL +   + L C     +T T AA  E+  R+   I 
Sbjct: 29  SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 L   I    +  +    P +S+ + A       L++     + TIH FC+ I+ 
Sbjct: 89  VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 148 DLAFESSLLFESDFTLDDSE 167


>gi|329121051|ref|ZP_08249682.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM
          19965]
 gi|327471213|gb|EGF16667.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM
          19965]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT  L  R+  +L     P  +L +T T  AA EM  RV  ++
Sbjct: 25 IMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNKAAQEMKERVQNLV 75


>gi|323142809|ref|ZP_08077522.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei
          YIT 12066]
 gi|322417454|gb|EFY08075.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei
          YIT 12066]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRV 82
          V A AGSGKT ++  +++ L+  +  P+  +C +T T  AAAEM  RV
Sbjct: 20 VLAGAGSGKTRVITAKIVNLITGHKLPAKTVCAVTFTNKAAAEMRERV 67


>gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 862

 Score = 41.6 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 40/184 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
           + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM 
Sbjct: 5   REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  ++ +                    P K+                  +++ T H+F
Sbjct: 65  DRIQSLVGS--------------------PAKA------------------VEISTFHSF 86

Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C  ++QQ       + +   I DEE  K+L E  +   L  +   N   + K +  +   
Sbjct: 87  CFFVLQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANIIGMVKEYRSLYGF 146

Query: 199 SNDE 202
            +D+
Sbjct: 147 YSDD 150


>gi|313886343|ref|ZP_07820068.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924212|gb|EFR34996.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 785

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 37/141 (26%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           A V A AGSGKT ++  ++  L+    +P  L  LT T  AA EM  RV ++      L 
Sbjct: 22  ALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTNKAAGEMRSRVSDM------LG 75

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           + I                                  L++ T HA C  I++++      
Sbjct: 76  ESIAYR-------------------------------LRMGTFHAICGRILRRYAPLLGY 104

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           +  ++I D   +K LI    K
Sbjct: 105 SQDYSIYDTSDTKALIRNCIK 125


>gi|242241668|ref|ZP_04796113.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus
          epidermidis W23144]
 gi|242234878|gb|EES37189.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus
          epidermidis W23144]
          Length = 295

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+    SEQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV  ++
Sbjct: 64 AAKEMKTRVEHLV 76


>gi|237709837|ref|ZP_04540318.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA]
 gi|229455930|gb|EEO61651.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA]
          Length = 1058

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L ++   W  + D+
Sbjct: 12  ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
             +  + KI  + + P +   + A   L  ++      +V+TI +F +++M+    E  +
Sbjct: 70  DSNPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129

Query: 154 TSHFAI 159
            ++  I
Sbjct: 130 GANLNI 135


>gi|163794460|ref|ZP_02188431.1| UvrD/REP helicase [alpha proteobacterium BAL199]
 gi|159180184|gb|EDP64707.1| UvrD/REP helicase [alpha proteobacterium BAL199]
          Length = 798

 Score = 41.6 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  LL L  A P  +L +T T  A+ EM  RV  I+
Sbjct: 52  VLAGAGTGKTRVLTTRLAHLLALGKARPWNVLAVTFTNRASREMKERVARIV 103


>gi|157149814|ref|YP_001450693.1| first chain of major exonuclease RexA [Streptococcus gordonii
          str. Challis substr. CH1]
 gi|251764541|sp|A8AY33|ADDA_STRGC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
          Full=ATP-dependent helicase/nuclease AddA
 gi|157074608|gb|ABV09291.1| first chain of major exonuclease RexA [Streptococcus gordonii
          str. Challis substr. CH1]
          Length = 1216

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++VQR++  +L       L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVSIQELFISTFTVKAAGELKERL 91


>gi|51893634|ref|YP_076325.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM
          14863]
 gi|51857323|dbj|BAD41481.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM
          14863]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AG+GKT     R+  LL     P  ++C+T T  AA EM  R + ++ A
Sbjct: 28 VIAGAGAGKTRTATHRLACLLARGVPPEAVMCITFTNKAAREMRDRAVALVGA 80


>gi|319952833|ref|YP_004164100.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319421493|gb|ADV48602.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 1041

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 6/129 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL- 92
           +A+AGSGKT+ L +  L+++L++A  +    +L +T T  A AEM  R+++ +  +  + 
Sbjct: 10  NASAGSGKTYTLTKSYLKIILSSATSANYREILAITFTNKAVAEMKERIIDSLYDFGKVK 69

Query: 93  -SDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            +D   S  +  ++    +   + K A+  L  IL       V TI  F   +++ F  +
Sbjct: 70  TADHAPSMFLDLVKELHIDVETLQKRAKTRLKEILHNYAFFDVSTIDKFTHRLIRTFAKD 129

Query: 151 ANITSHFAI 159
             +  +F +
Sbjct: 130 LKLPQNFEV 138


>gi|317165456|gb|ADV08997.1| hypothetical protein NGTW08_2046 [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|322418722|ref|YP_004197945.1| UvrD/REP helicase [Geobacter sp. M18]
 gi|320125109|gb|ADW12669.1| UvrD/REP helicase [Geobacter sp. M18]
          Length = 678

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
          +S+   EQL A   T  A  V A AGSGKT ++  R+  L+L    P+  +L +T T  A
Sbjct: 4  LSRLNPEQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLILNKKVPADRVLAVTFTNKA 63

Query: 75 AAEMSHRV 82
          + EM  RV
Sbjct: 64 SKEMKERV 71


>gi|300775551|ref|ZP_07085412.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC
          35910]
 gi|300505578|gb|EFK36715.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC
          35910]
          Length = 776

 Score = 41.6 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     P  +L LT T  AA EM  R+ +++
Sbjct: 24 VLAGAGSGKTRVLTMRIAHLIHNGIDPFNILALTFTNKAAREMKDRIAKVV 74


>gi|148544658|ref|YP_001272028.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016]
 gi|184154011|ref|YP_001842352.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227363781|ref|ZP_03847888.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3]
 gi|325682992|ref|ZP_08162508.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A]
 gi|148531692|gb|ABQ83691.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016]
 gi|183225355|dbj|BAG25872.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227071138|gb|EEI09454.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3]
 gi|324977342|gb|EGC14293.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A]
          Length = 757

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT +L  RV  L+  N   P  +L +T T  AA EM  RV ++         
Sbjct: 28  VMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIW 87

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITI 124
           ++ +  L   IL  +I KI   +    +D S+ R L+  I
Sbjct: 88  VSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRI 127


>gi|326801224|ref|YP_004319043.1| UvrD/REP helicase [Sphingobacterium sp. 21]
 gi|326551988|gb|ADZ80373.1| UvrD/REP helicase [Sphingobacterium sp. 21]
          Length = 729

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           V A AG+GKT ++  +V  L+     P+ +L LT T+ +A EM +RV +++ A S
Sbjct: 117 VIAGAGTGKTRVITYKVSYLIEKGFEPNEILLLTFTRKSANEMLNRVQKLLHAKS 171


>gi|297622299|ref|YP_003703733.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
 gi|297163479|gb|ADI13190.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
          Length = 1106

 Score = 41.6 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          L++    EQ  A++  +  A V A AGSGKT  +V R+  L+ A+  +P+ +L +T T  
Sbjct: 10 LLAVLNEEQRAAAEHFQGPALVLAGAGSGKTRTVVHRIAYLMDAHEVYPTEILAVTFTNK 69

Query: 74 AAAEMSHRVLEII 86
          AA E+  RV  ++
Sbjct: 70 AAGELKERVAHLM 82


>gi|297571780|ref|YP_003697554.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932127|gb|ADH92935.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 1156

 Score = 41.6 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 19/175 (10%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64
           +F +   T D     +   ++ SD  ++  V A AGSGKT  +  R+  LL +  A P+ 
Sbjct: 2   NFADFVGTTDFPPTDEQAAVITSD-HQATLVIAGAGSGKTATMANRIAWLLASGKAQPNH 60

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLI 122
           +L LT T+ AA E++ RV + I   +       S+ +T   I   +  K+ ++ A H   
Sbjct: 61  ILGLTFTRKAAGELAERVNKKIREITRRGIYTPSSMLTDGNIGDGEEGKNQIASAVH--- 117

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
              +T     + T ++F   I          TS+  +  E+   +L+ EA++  L
Sbjct: 118 ---DTLSRPTISTYNSFASQIA---------TSYAMLIGEDPGARLMSEAERYQL 160


>gi|294671393|ref|ZP_06736243.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291306941|gb|EFE48184.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 855

 Score = 41.6 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 44/138 (31%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           ++AG+GKT  L  R+  ++  N A    +LCLT T  A  EM  +++E +          
Sbjct: 25  SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153
                    GK+                     GLK  V+T H+FC + I ++     +I
Sbjct: 75  ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104

Query: 154 TSHFAIADEEQSKKLIEE 171
           +  F I DEE +K++I E
Sbjct: 105 SFDFTIYDEEDTKEIISE 122


>gi|212692987|ref|ZP_03301115.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855]
 gi|237725615|ref|ZP_04556096.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212664456|gb|EEB25028.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855]
 gi|229436302|gb|EEO46379.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 796

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL     P ++L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNKAAREMKERI 71


>gi|153000571|ref|YP_001366252.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS185]
 gi|151365189|gb|ABS08189.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS185]
          Length = 1273

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    LRLLL +   + L C     +T T AA  E+  R+   I 
Sbjct: 29  SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 L   I    +  +    P +S+ + A       L++     + TIH FC+ I+ 
Sbjct: 89  VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 148 DLAFESSLLFESDFTLDDSE 167


>gi|296436177|gb|ADH18351.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/9768]
 gi|296438037|gb|ADH20198.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/11074]
 gi|297140539|gb|ADH97297.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/9301]
          Length = 1026

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q VLR LL  +   T  +L +T T AA  E+  R+   +     L
Sbjct: 18  FLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148
             + LS   T +       S  +K + L + I   L T   + + TIH FC   ++Q FP
Sbjct: 78  FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135


>gi|295133070|ref|YP_003583746.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase
          [Zunongwangia profunda SM-A87]
 gi|294981085|gb|ADF51550.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase
          [Zunongwangia profunda SM-A87]
          Length = 773

 Score = 41.6 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  ++        +L LT T  AA EM HR+ +I+
Sbjct: 25 VIAGAGSGKTRVLTYRIAYMMSKGIDAFNILALTFTNKAAREMQHRISQIV 75


>gi|288959583|ref|YP_003449924.1| uvrD/REP helicase [Azospirillum sp. B510]
 gi|288911891|dbj|BAI73380.1| uvrD/REP helicase [Azospirillum sp. B510]
          Length = 1054

 Score = 41.6 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V+A+AG+GKTH L +  L  + A   P  +L  T T+ AAAE+  R+
Sbjct: 13 VTASAGTGKTHRLTRAYLDAVAAGTAPEAILATTFTRKAAAELLERI 59


>gi|225012823|ref|ZP_03703257.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
 gi|225003097|gb|EEG41073.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
          Length = 775

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+ +     ++L LT T  AA EM  R+  ++
Sbjct: 29 VIAGAGSGKTRVLTYRIAHLMASGVDSFSILALTFTNKAAREMKARIGALV 79


>gi|160875207|ref|YP_001554523.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS195]
 gi|160860729|gb|ABX49263.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS195]
 gi|315267400|gb|ADT94253.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS678]
          Length = 1273

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    LRLLL +   + L C     +T T AA  E+  R+   I 
Sbjct: 29  SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 L   I    +  +    P +S+ + A       L++     + TIH FC+ I+ 
Sbjct: 89  VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 148 DLAFESSLLFESDFTLDDSE 167


>gi|76789378|ref|YP_328464.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis A/HAR-13]
 gi|76167908|gb|AAX50916.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis A/HAR-13]
          Length = 1026

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q VLR LL  +   T  +L +T T AA  E+  R+   +     L
Sbjct: 18  FLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148
             + LS   T +       S  +K + L + I   L T   + + TIH FC   ++Q FP
Sbjct: 78  FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135


>gi|326390898|ref|ZP_08212449.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993046|gb|EGD51487.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW
           200]
          Length = 711

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 40/138 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  L+      PS +L +T T  AA EM  RV +            
Sbjct: 27  AGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAEEMKTRVED------------ 74

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                      +L   G L V T H+ C  I+++   +     +
Sbjct: 75  ---------------------------LLGYIGDLWVSTFHSACVRILRRDIDKIGYDRN 107

Query: 157 FAIADEEQSKKLIEEAKK 174
           F I D    K LI+E  K
Sbjct: 108 FVIFDTTDQKALIQECLK 125


>gi|313891747|ref|ZP_07825352.1| putative ATP-dependent DNA helicase PcrA [Dialister
          microaerophilus UPII 345-E]
 gi|313119741|gb|EFR42928.1| putative ATP-dependent DNA helicase PcrA [Dialister
          microaerophilus UPII 345-E]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT  L  R+  +L     P  +L +T T  AA EM  RV  ++
Sbjct: 25 IMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNKAAQEMKERVQNLV 75


>gi|308389552|gb|ADO31872.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha710]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|296314222|ref|ZP_06864163.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC
          43768]
 gi|296839123|gb|EFH23061.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC
          43768]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|296127434|ref|YP_003634686.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563]
 gi|296019250|gb|ADG72487.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563]
          Length = 1124

 Score = 41.6 bits (96), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +V+A+AG+GKT  + +  ++LL      S+++ +T TKAAA EM  R+
Sbjct: 22 CFVNASAGTGKTSTITELYIKLLENREKVSSIVVITFTKAAANEMLLRI 70


>gi|241890126|ref|ZP_04777424.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379]
 gi|241863748|gb|EER68132.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379]
          Length = 727

 Score = 41.6 bits (96), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
          ++L+      QL A   T  A  V A AGSGKT +L  R+  L+   N   + +L +T T
Sbjct: 1  MNLVQNMNDNQLKAILKTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNILENNILAITFT 60

Query: 72 KAAAAEMSHRVLEIITAWS 90
            AA EM  R+  ++   S
Sbjct: 61 NKAAKEMKERIYALVGETS 79


>gi|288801211|ref|ZP_06406666.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299
          str. F0039]
 gi|288331822|gb|EFC70305.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299
          str. F0039]
          Length = 803

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT +L  ++  L+     P ++L LT T  AA EM  R+  ++   S
Sbjct: 24 VIAGAGSGKTRVLTYKIAYLIEKGFMPWSILALTFTNKAANEMKERIATLVGEQS 78


>gi|28572258|ref|NP_789038.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
 gi|28410389|emb|CAD66775.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          +SA AGSGKT +L  R+   L    A    +L +T T  AA+EM HR  +++
Sbjct: 28 ISAGAGSGKTKVLTHRIAGFLATGEASCDQILAITFTNKAASEMRHRTGDLV 79


>gi|15602276|ref|NP_245348.1| DNA-dependent helicase II [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720662|gb|AAK02495.1| UvrD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 726

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 35/133 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +L  R+  L+ +      +++ +T T  AAAEM HR+   +  
Sbjct: 21  PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEQVSEGSIMAVTFTNKAAAEMRHRIESTLA- 79

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            +H S  +                                 G+ V T H+    +++   
Sbjct: 80  -NHASQRLF--------------------------------GMWVGTFHSIAHRLLRAHH 106

Query: 149 LEANITSHFAIAD 161
           L+AN+   F I D
Sbjct: 107 LDANLPQDFQILD 119


>gi|325142627|gb|EGC65018.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 961-5945]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 49/187 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++        
Sbjct: 21  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLPK------ 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S+ R           GL + T H+    I+++        
Sbjct: 75  --------------------SQTR-----------GLTICTFHSLGMKILREEANHIGYK 103

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210
            +F+I D   S K+I E    T         E + KA ++I    ND    ED+    S+
Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTASN 156

Query: 211 IISNRTA 217
           I   +TA
Sbjct: 157 IWEQQTA 163


>gi|21226292|ref|NP_632214.1| DNA helicase II [Methanosarcina mazei Go1]
 gi|20904537|gb|AAM29886.1| DNA helicase II [Methanosarcina mazei Go1]
          Length = 908

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 40/125 (32%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT  L ++++ LLL  N  P++++  T T+ AA  M  RV + +     L  E 
Sbjct: 36  AGAGAGKTETLTRKIVCLLLYENVKPASIVAFTFTEKAAQGMKSRVYDRV---RQLGGEE 92

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           + A++                           G + + TIH +C  +++         +H
Sbjct: 93  ICAKL---------------------------GEMYIGTIHGYCSFLLE---------NH 116

Query: 157 FAIAD 161
           F   D
Sbjct: 117 FKFGD 121


>gi|152974753|ref|YP_001374270.1| UvrD/REP helicase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023505|gb|ABS21275.1| UvrD/REP helicase [Bacillus cytotoxicus NVH 391-98]
          Length = 684

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV
Sbjct: 70  AGAGSGKTSVLTTRVGYLVNVKKVHPRNILLLTFTQKAAEEIRSRV 115


>gi|322391963|ref|ZP_08065427.1| exonuclease RexA [Streptococcus peroris ATCC 700780]
 gi|321145189|gb|EFX40586.1| exonuclease RexA [Streptococcus peroris ATCC 700780]
          Length = 1215

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L        L   T T  AA E+  R+           ++
Sbjct: 42  VSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELKERL-----------EK 90

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +S +I + Q       D+   +HL   + + P    + T+ +F +  + +     N++ 
Sbjct: 91  KISQQIQETQ-------DLELKKHLGRQLADLPNA-AIGTMDSFTQKFLTKHGYLLNLSP 142

Query: 156 HFAIADEEQSKKLIE 170
           +F I + E  + L++
Sbjct: 143 NFRILENESEQLLLK 157


>gi|168492513|ref|ZP_02716656.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04]
 gi|183573318|gb|EDT93846.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04]
          Length = 1216

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           NS +E  +T D I     E +  S   ++  VSA+AGSGKT ++ +R+L  L      S 
Sbjct: 21  NSSKEQKKTTDQI-----EAIYTS--GQNILVSASAGSGKTFVMAERILNQLARGVEISQ 73

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           L   T T  AA E+  R+ + I+     +D++
Sbjct: 74  LFISTFTVKAATELKERLEKKISKKIQETDDV 105


>gi|28493047|ref|NP_787208.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476087|gb|AAO44177.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          +SA AGSGKT +L  R+   L    A    +L +T T  AA+EM HR  +++
Sbjct: 28 ISAGAGSGKTKVLTHRIAGFLATGEASCDQILAITFTNKAASEMRHRTGDLV 79


>gi|167038090|ref|YP_001665668.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320116497|ref|YP_004186656.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
 gi|166856924|gb|ABY95332.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319929588|gb|ADV80273.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 711

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
          A AGSGKT +L  R+  L+      PS +L +T T  AA EM  RV +++     L
Sbjct: 27 AGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAEEMKTRVEDLLGYIGDL 82


>gi|319942765|ref|ZP_08017069.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis
           3_1_45B]
 gi|319803645|gb|EFW00595.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis
           3_1_45B]
          Length = 816

 Score = 41.6 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D+++    EQ  A + P  S  + A AGSGKT +L  R+  LL  N A    +L +T T 
Sbjct: 4   DILANLNPEQHRAVTAPEESVLILAGAGSGKTRVLTTRIAWLLEHNLATTGEILAVTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM                      +T+++G  P   D+ +              + 
Sbjct: 64  KAAKEM----------------------LTRLEGMIP--YDLRR--------------MW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H  C  I++    EA +   F I D      L++   K+
Sbjct: 86  VGTFHGLCNRILRIHAQEAGLPKTFQILDSGDQLSLVKRLMKA 128


>gi|302336244|ref|YP_003801451.1| UvrD/REP helicase [Olsenella uli DSM 7084]
 gi|301320084|gb|ADK68571.1| UvrD/REP helicase [Olsenella uli DSM 7084]
          Length = 879

 Score = 41.6 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 49/175 (28%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
           T+DL     +++  A        V A AGSGKT +L  R+  ++      P  +L +T T
Sbjct: 35  TVDLSGLNPAQRKAAETTHGPLLVLAGAGSGKTRVLTYRIAHMIADEGVRPWQVLAITFT 94

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  ++                                         PGG 
Sbjct: 95  NKAAAEMRERLGALL-----------------------------------------PGGT 113

Query: 132 K---VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           +   V T HA C  ++++         +F I D++ S++L+    KS +A + +D
Sbjct: 114 RGMWVCTFHAMCVRMLREDGELLGYQPNFTIYDDDDSRRLV----KSIMADLDID 164


>gi|255507242|ref|ZP_05382881.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis D(s)2923]
 gi|289525682|emb|CBJ15163.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis Sweden2]
 gi|296435250|gb|ADH17428.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis E/150]
 gi|296438969|gb|ADH21122.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis E/11023]
          Length = 1026

 Score = 41.6 bits (96), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q VLR LL      T  +L +T T AA  E+  R+   +     L
Sbjct: 18  FLEASAGTGKTFTIEQVVLRSLLEGPIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148
             + LS   T +       S  +K + L + I   L T   + + TIH FC   ++Q FP
Sbjct: 78  FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135


>gi|196228173|ref|ZP_03127040.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196227576|gb|EDY22079.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 678

 Score = 41.6 bits (96), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 37/134 (27%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AG+GKT ++  RV  L+     PS +L +T T  AA EM  R+ ++I           
Sbjct: 28  AGAGTGKTRVITMRVAFLISQGVDPSHILAVTFTNKAADEMRERLAKMI----------- 76

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                          + S+A+ + ++           T HA C  I++Q   +     +F
Sbjct: 77  ---------------EPSQAKKVTMS-----------TFHALCVRILRQDIEKLGWKKNF 110

Query: 158 AIADEEQSKKLIEE 171
           +I DE     LI++
Sbjct: 111 SIYDEGDQMGLIKK 124


>gi|40063254|gb|AAR38081.1| DNA helicase II [uncultured marine bacterium 577]
          Length = 749

 Score = 41.6 bits (96), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
          L+S   +EQL A +   +SA V A AGSGKT +L  R+  L+ +    P ++L +T T  
Sbjct: 4  LLSSLNNEQLKAVTLQDQSALVLAGAGSGKTRVLTTRIAYLIQSRQVSPHSILAVTFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  RV
Sbjct: 64 AAKEMLMRV 72


>gi|319411282|emb|CBY91690.1| DNA helicase II [Neisseria meningitidis WUE 2594]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|261392291|emb|CAX49817.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 8013]
 gi|325134572|gb|EGC57216.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M13399]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|260890362|ref|ZP_05901625.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii
           F0254]
 gi|260859982|gb|EEX74482.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii
           F0254]
          Length = 638

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 11/159 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AG+GKT+ L    +  L+   +   ++ +T TK A AE+  R+ + +   +   D+
Sbjct: 7   LKASAGTGKTYRLSLEFIANLVRGVNYKNIVVMTFTKKATAEIKERIFDFLYQIAF--DK 64

Query: 96  ILSAEITKIQGKKPNKSDMSKA--RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
              AE+ K   +     +++K   +++   +++    +++ TI  F   I +       I
Sbjct: 65  GNGAELEKNLKEIYKFDNLNKKELQNIYFEMIKNKEDIRISTIDRFTNQIFKN-----AI 119

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           T +F I + E  +K  +E     L  I+   NEE+ + F
Sbjct: 120 TPYFNIYNYEIFEKETDEFYSKVLIKII--ENEEIFQKF 156


>gi|253582808|ref|ZP_04860028.1| UvrD/REP helicase [Fusobacterium varium ATCC 27725]
 gi|251835384|gb|EES63925.1| UvrD/REP helicase [Fusobacterium varium ATCC 27725]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           S  I+   +   EQL A       + V A AGSGKT  +V R   ++        +L L
Sbjct: 23 ESYKINYCKELNEEQLRALTSLEGQYLVIAGAGSGKTRTIVYRTAFMIERGIPEKKILML 82

Query: 69 THTKAAAAEMSHRV 82
          T TK AA EM  R+
Sbjct: 83 TFTKKAALEMEERI 96


>gi|229829221|ref|ZP_04455290.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles
          DSM 14600]
 gi|229792384|gb|EEP28498.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles
          DSM 14600]
          Length = 640

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
          A  GSGKT ++++RV RL+     P+  +L +T T+ AA EM +R L ++
Sbjct: 26 AGPGSGKTSVIIRRVARLIEERKIPAEQILVITFTREAAMEMQNRFLSVL 75


>gi|237740038|ref|ZP_04570519.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31]
 gi|229422055|gb|EEO37102.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 39/145 (26%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV   
Sbjct: 15  ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERV--- 71

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                    E L  E+ K                             + T H+F   +++
Sbjct: 72  ---------EDLVGEVAK--------------------------SCTISTFHSFGMRLLR 96

Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170
            +  E   + +F I D +  K++I+
Sbjct: 97  MYAAEVGYSPNFTIYDTDDQKRIIK 121


>gi|325144733|gb|EGC67028.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis
          M01-240013]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|282858262|ref|ZP_06267448.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588971|gb|EFB94090.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 1131

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    + +L+ N    + +L +T T  A  EM  R+L  +     + + +
Sbjct: 15  ASAGSGKTFTLTVEYISILVKNPEDYNKMLAVTFTNKATQEMKLRILSQLYG---IGNGL 71

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILET----PGGLKVQTIHAFCEAIMQQFPLEAN 152
            S++   +Q K       +  R+  + ILE         +VQTI AF + +++    E  
Sbjct: 72  PSSDNYLLQVKAKTGLTETSIRNNALYILEKLTHEYQNFRVQTIDAFFQTVLRNLGKELG 131

Query: 153 ITSHFAI 159
           +T++  +
Sbjct: 132 LTANLRV 138


>gi|254805722|ref|YP_003083943.1| DNA helicase II [Neisseria meningitidis alpha14]
 gi|254669264|emb|CBA08172.1| DNA helicase II [Neisseria meningitidis alpha14]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|261377453|ref|ZP_05982026.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685]
 gi|269146180|gb|EEZ72598.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|157415048|ref|YP_001482304.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 81116]
 gi|157386012|gb|ABV52327.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 81116]
 gi|307747689|gb|ADN90959.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
          M1]
 gi|315931191|gb|EFV10163.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
          jejuni 327]
          Length = 676

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 17 ISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          +S+  +EQ LA+  D  R+  V A+AG+GKT  +V R+  LL     P  ++ LT T  A
Sbjct: 3  LSKLNNEQYLAATADFGRN-LVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKA 61

Query: 75 AAEMSHRV 82
          + EM  R+
Sbjct: 62 SKEMIGRL 69


>gi|78358610|ref|YP_390059.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78221015|gb|ABB40364.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20]
          Length = 719

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT  +V R+  ++      S +L LT T+ AA EM HR  +++
Sbjct: 25 VIAGAGSGKTRTVVYRLANMVQQGIAASNILLLTFTRKAAQEMQHRAAQLL 75


>gi|330826182|ref|YP_004389485.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329311554|gb|AEB85969.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 796

 Score = 41.6 bits (96), Expect = 0.100,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+     EQL A + P   A + A AGSGKT +L  R+  LL   +A P  +L +T T  
Sbjct: 14 LLQGLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLSTGHATPGGILAVTFTNK 73

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 74 AAKEMLTRL 82


>gi|325145300|gb|EGC67578.1| DNA helicase II [Neisseria meningitidis M01-240013]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|288554983|ref|YP_003426918.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
 gi|288546143|gb|ADC50026.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
          Length = 742

 Score = 41.6 bits (96), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  LL   A  P  +L +T T  AA EM  RV +++
Sbjct: 32 AGAGSGKTRVLTHRIAYLLREKAIAPWNVLAITFTNKAAREMKDRVAKLV 81


>gi|262282991|ref|ZP_06060758.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA]
 gi|262261243|gb|EEY79942.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA]
          Length = 1227

 Score = 41.6 bits (96), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           VSA+AGSGKT ++VQR++  +L       L   T T  AA E+  R+
Sbjct: 56  VSASAGSGKTFVMVQRIIDQILRGVSIQELFISTFTVKAAGELKERL 102


>gi|257865963|ref|ZP_05645616.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30]
 gi|257872296|ref|ZP_05651949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10]
 gi|257875590|ref|ZP_05655243.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20]
 gi|257799897|gb|EEV28949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30]
 gi|257806460|gb|EEV35282.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10]
 gi|257809756|gb|EEV38576.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20]
          Length = 747

 Score = 41.6 bits (96), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+   N +P  +L +T T  AA EM  RV +++ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVSQLLGS 81


>gi|269123730|ref|YP_003306307.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
 gi|268315056|gb|ACZ01430.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 40/139 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT  L  ++  ++   N +P  +L LT T  AA EM  RV  ++      ++EI
Sbjct: 26  AGAGSGKTRTLTFKIAYMIKEKNINPRNILALTFTNKAAKEMKERVETLVGD----NNEI 81

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           L                                   + T H+F   +++ +      T++
Sbjct: 82  L-----------------------------------ISTFHSFAVRLLRTYSERIGYTNN 106

Query: 157 FAIADEEQSKKLIEEAKKS 175
           F I D    K +I++  KS
Sbjct: 107 FNIYDNNDQKSIIKKILKS 125


>gi|78186341|ref|YP_374384.1| DNA helicase II [Chlorobium luteolum DSM 273]
 gi|78166243|gb|ABB23341.1| ATP-dependent DNA helicase PcrA [Chlorobium luteolum DSM 273]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.100,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 38/138 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++  R+  L+     PS  +L LT T  AA EM HRV           D
Sbjct: 25  VLAGAGSGKTRVITYRIAHLIGTKGVPSKNILALTFTNKAAGEMRHRV-----------D 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            +L           P  S                 GL + T H+    +++ +      +
Sbjct: 74  TLLG----------PGASS----------------GLWIGTFHSVFARLLRDYIERLGYS 107

Query: 155 SHFAIADEEQSKKLIEEA 172
             F+I D + SK LI ++
Sbjct: 108 RSFSIFDSDDSKSLIRQS 125


>gi|323463999|gb|ADX76152.1| ATP-dependent DNA helicase PcrA [Staphylococcus pseudintermedius
          ED99]
          Length = 731

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++    EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVANMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV  ++
Sbjct: 64 AAKEMKERVQALV 76


>gi|296115456|ref|ZP_06834090.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978029|gb|EFG84773.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 700

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT+ L  RV  L+ + A P  +L LT ++ A+ EM+  V  I
Sbjct: 44 VIAGAGSGKTNTLAHRVAHLIASGADPRRILLLTFSRRASVEMTRCVERI 93


>gi|257453822|ref|ZP_05619100.1| UvrD/REP helicase [Enhydrobacter aerosaccus SK60]
 gi|257448749|gb|EEV23714.1| UvrD/REP helicase [Enhydrobacter aerosaccus SK60]
          Length = 1504

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  L   +LRL++    P   ++  T T++AAAEM  R+ E +  +  L  
Sbjct: 57  IEASAGTGKTWTLTGVMLRLIVQAGQPCEKIIATTFTRSAAAEMRQRIRERLQDFYQLLQ 116

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLI 122
            I  +  T +     N SD+  ++ + +
Sbjct: 117 MINHSTFTPL-----NDSDLDSSKAIAV 139


>gi|296135521|ref|YP_003642763.1| UvrD/REP helicase [Thiomonas intermedia K12]
 gi|295795643|gb|ADG30433.1| UvrD/REP helicase [Thiomonas intermedia K12]
          Length = 781

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          LI Q   EQ  A + P  +A + A AGSGKT +L  R+  L+      P+ +L +T T  
Sbjct: 4  LIQQLNPEQHAAVTLPAENALILAGAGSGKTRVLTTRIAWLISTGQVTPAGILAVTFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 64 AAKEMMARL 72


>gi|183601527|ref|ZP_02962897.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190974|ref|YP_002968368.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196380|ref|YP_002969935.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219133|gb|EDT89774.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249366|gb|ACS46306.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250934|gb|ACS47873.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793963|gb|ADG33498.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 939

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 68  IGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTNKAAAEMRERLGALI 119


>gi|315103757|gb|EFT75733.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2]
          Length = 1071

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT TK A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTKKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|314923610|gb|EFS87441.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1]
          Length = 1071

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT TK A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTKKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|304387165|ref|ZP_07369409.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC
          13091]
 gi|304338769|gb|EFM04879.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC
          13091]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|288905008|ref|YP_003430230.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus
           gallolyticus UCN34]
 gi|288731734|emb|CBI13295.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus
           gallolyticus UCN34]
          Length = 1210

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 22/155 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94
           VSA+AGSGKT ++V+R++  +L       L   T T  AA E+  R+ + I+ A    +D
Sbjct: 45  VSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKISQALQETTD 104

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                            +D+    +  +  L+T     + T+ AF + ++ Q+     I+
Sbjct: 105 -----------------NDLKNYLNEQLLGLQTA---DIGTMDAFTQKLVNQYGYTLGIS 144

Query: 155 SHFAIADEEQSKKLIE-EAKKSTLASIMLDNNEEL 188
             F I  E+  + +++ E      +  M  N+ EL
Sbjct: 145 PTFRIMTEKSEQDILKNEVFFDLFSDYMTGNDAEL 179


>gi|254670269|emb|CBA05543.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153]
 gi|325136509|gb|EGC59113.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M0579]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|238025782|ref|YP_002910013.1| UvrD/REP helicase [Burkholderia glumae BGR1]
 gi|237874976|gb|ACR27309.1| UvrD/REP helicase [Burkholderia glumae BGR1]
          Length = 694

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+      P  +  +T T  AAAEM  RV            
Sbjct: 22  VLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           ++L  +     GK+  K  +++              L V T H+    I++Q      + 
Sbjct: 71  KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F+I D +    +++E   +T
Sbjct: 117 PQFSIMDSDDCFGMVQEQIGTT 138


>gi|153009094|ref|YP_001370309.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188]
 gi|151560982|gb|ABS14480.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188]
          Length = 864

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  R+  ++
Sbjct: 65  VLAGAGTGKTRVLTTRIAHILTTGLAYPSQILAVTFTNKAAREMKERIGHLV 116


>gi|219683935|ref|YP_002470318.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
          lactis AD011]
 gi|219621585|gb|ACL29742.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
          lactis AD011]
          Length = 907

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 36 IGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTNKAAAEMRERLGALI 87


>gi|314966448|gb|EFT10547.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2]
 gi|315092775|gb|EFT64751.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1]
 gi|327327270|gb|EGE69046.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL103PA1]
          Length = 1071

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT TK A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTKKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|257869252|ref|ZP_05648905.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2]
 gi|257803416|gb|EEV32238.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2]
          Length = 750

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+   N +P  +L +T T  AA EM  RV +++ +
Sbjct: 34 AGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVNQLLGS 85


>gi|226951282|ref|ZP_03821746.1| UvrD/REP family helicase [Acinetobacter sp. ATCC 27244]
 gi|226837974|gb|EEH70357.1| UvrD/REP family helicase [Acinetobacter sp. ATCC 27244]
          Length = 587

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 15/97 (15%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII--- 86
           T + +++A  GSGKT  + QRV   + + A+ PS +  L+ TK+AA E+ HR+ E I   
Sbjct: 17  TENIFLNACPGSGKTETIAQRVANEVESWANFPSGIAVLSFTKSAAKEIEHRIKEKIDNN 76

Query: 87  TAWSHLSDEI-----------LSAEITKIQGKKPNKS 112
           T + H                LS +I+K +G   + S
Sbjct: 77  TTYPHFIGTFDSFILKNIVNPLSKDISKYEGHNGDYS 113


>gi|34849423|gb|AAP58922.1| ATP-dependent DNA helicase [Spiroplasma kunkelii CR2-3x]
          Length = 729

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 11 SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
          +E I+ ++  + E +L  + P R   + A AGSGKT ++  ++  L+  AN  P  +  +
Sbjct: 3  NEFIESLNPNQREAVLRITGPVR---IIAGAGSGKTRVITNKIAYLIKYANLQPWRICAV 59

Query: 69 THTKAAAAEMSHRVLEII 86
          T T  A  EM  R++E+I
Sbjct: 60 TFTNKATNEMRTRIVEMI 77


>gi|15676157|ref|NP_273289.1| DNA helicase II [Neisseria meningitidis MC58]
 gi|7225454|gb|AAF40687.1| DNA helicase II [Neisseria meningitidis MC58]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|323697750|ref|ZP_08109662.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323457682|gb|EGB13547.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 718

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          V A AGSGKT  +V R+  L+     P+ +L LT T+ AA EM  R   I+    H
Sbjct: 26 VIAGAGSGKTRTIVYRLANLVQKGVDPAQILLLTFTRKAAQEMLARAETILGRPLH 81


>gi|316985163|gb|EFV64115.1| DNA helicase II [Neisseria meningitidis H44/76]
 gi|325141072|gb|EGC63575.1| DNA helicase II [Neisseria meningitidis CU385]
 gi|325199439|gb|ADY94894.1| DNA helicase II [Neisseria meningitidis H44/76]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|309379347|emb|CBX22120.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|121998060|ref|YP_001002847.1| exodeoxyribonuclease V subunit beta [Halorhodospira halophila SL1]
 gi|121589465|gb|ABM62045.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Halorhodospira
           halophila SL1]
          Length = 1240

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 89/194 (45%), Gaps = 16/194 (8%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVL 83
           S  + A+AG+GKT+ +    LRL+L +           P  +L +T T+AA  E+  R+ 
Sbjct: 20  SRLIEASAGTGKTYTIAALYLRLVLNHGREAAYGQSLTPPQILVVTFTEAATRELRERIR 79

Query: 84  -EIITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +  A +   D   + E+      +  + P +++ ++A  +L    E      V TIHA
Sbjct: 80  SRLAEAAAAFRDPDQAVELDPFLDGLLREYPQRAERAQAARVLELAAEWMDEAAVATIHA 139

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           +C  ++++   ++   S F    E    +L+ E+ +    + +   + E  + F + +  
Sbjct: 140 WCYRMLREHAFDSG--SLFTQDLETDPGELLAESVRDYWRTFVYPLDPEAFQLFRQAVGA 197

Query: 199 SNDEDIETLISDII 212
           ++ + ++  ++ +I
Sbjct: 198 ADPDALQRALARLI 211


>gi|298385429|ref|ZP_06994987.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14]
 gi|298261570|gb|EFI04436.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14]
          Length = 788

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 37/139 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+             
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKDRI------------- 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                          +  M +AR+L +            T H+    I++        TS
Sbjct: 73  -------------ARQVGMERARYLWMG-----------TFHSVFSRILRAEAKYIGFTS 108

Query: 156 HFAIADEEQSKKLIEEAKK 174
            F I D   SK LI    K
Sbjct: 109 QFTIYDSADSKSLIRSIIK 127


>gi|261379427|ref|ZP_05984000.1| DNA helicase II [Neisseria subflava NJ9703]
 gi|284797877|gb|EFC53224.1| DNA helicase II [Neisseria subflava NJ9703]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|29346067|ref|NP_809570.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337961|gb|AAO75764.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 788

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 37/139 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+             
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKDRI------------- 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                          +  M +AR+L +            T H+    I++        TS
Sbjct: 73  -------------ARQVGMERARYLWMG-----------TFHSVFSRILRAEAKYIGFTS 108

Query: 156 HFAIADEEQSKKLIEEAKK 174
            F I D   SK LI    K
Sbjct: 109 QFTIYDSADSKSLIRSIIK 127


>gi|325198582|gb|ADY94038.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis G2136]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|322516094|ref|ZP_08069031.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124]
 gi|322125509|gb|EFX96855.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124]
          Length = 1217

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L ++        L   T T  AA E+  R+         L+++
Sbjct: 45  VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERL------EKRLTEQ 98

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +  AE               + R  L   +   G   + T+ AF + ++ Q+     ++ 
Sbjct: 99  LGQAET-------------DEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145

Query: 156 HFAI 159
            F I
Sbjct: 146 IFRI 149


>gi|300814173|ref|ZP_07094456.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511830|gb|EFK39047.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
          T+ ++L+       A V A  G+GKT IL+ R L L+        +L +T +KAA  EMS
Sbjct: 4  TEKQKLVTLHRDGPALVLAVPGAGKTTILLHRTLNLIKTGVDAKRILTITFSKAATNEMS 63

Query: 80 HR 81
           R
Sbjct: 64 KR 65


>gi|302845461|ref|XP_002954269.1| hypothetical protein VOLCADRAFT_118642 [Volvox carteri f.
           nagariensis]
 gi|300260474|gb|EFJ44693.1| hypothetical protein VOLCADRAFT_118642 [Volvox carteri f.
           nagariensis]
          Length = 1705

 Score = 41.6 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 11  SETIDLISQTKSEQL----LASDPTRSA---WVSANAGSGKTHILVQRVLRLL-LANAHP 62
           +E  D  SQ + + L    LA+   RSA    VSA  GSGKT  L+ RV  L+ +   HP
Sbjct: 341 AEAADTRSQHRYDGLNDEQLAAVRDRSAPIVTVSAGPGSGKTRTLIARVTELVQVHGVHP 400

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITA 88
             +  +T T+  A E+S R+ E + A
Sbjct: 401 RNIGLVTFTRKTADELSSRLREALGA 426


>gi|254881838|ref|ZP_05254548.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA]
 gi|319641141|ref|ZP_07995844.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A]
 gi|254834631|gb|EET14940.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387272|gb|EFV68148.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A]
          Length = 1058

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L ++   W  + D+
Sbjct: 12  ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                + KI  + + P +   + A   L  ++      +V+TI +F +++M+    E  +
Sbjct: 70  DSDPYLQKITEELEIPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129

Query: 154 TSHFAI 159
            ++  I
Sbjct: 130 GANLNI 135


>gi|162451111|ref|YP_001613478.1| exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56']
 gi|161161693|emb|CAN92998.1| Exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56']
          Length = 1347

 Score = 41.6 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 21/176 (11%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPST--------------LLCLTHTKAAAAE 77
           R+  V+A+AG+GKTH L    + L L                     ++  T ++AAA E
Sbjct: 22  RNVVVAASAGTGKTHRLTALYVLLTLGLTSLGLPDAASAAPPVPPDRIVATTFSRAAARE 81

Query: 78  MSHRV---LEIITAWSHLSD----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           ++HRV   L  I  W+  +D    +IL A    + G       +++ R      L     
Sbjct: 82  IAHRVERSLREIARWNGEADIPFADILRARQAAVAGLGGASLPVAELRKRAEEALARLPA 141

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            ++ T+H   + I+ +  +   ++    I DEE+++ L + A    L+  + +  E
Sbjct: 142 ARIDTLHGVAKQIVDRHAIAMGLSPSARILDEEEAQALSDLAVDEALSRALAEGGE 197


>gi|15645527|ref|NP_207703.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Helicobacter pylori 26695]
 gi|2314046|gb|AAD07956.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Helicobacter pylori 26695]
          Length = 675

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    + A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHL 92
          M  RV +   + S +
Sbjct: 66 MIARVAKYFKSSSKI 80


>gi|84494608|ref|ZP_00993727.1| putative DNA helicase [Janibacter sp. HTCC2649]
 gi|84384101|gb|EAP99981.1| putative DNA helicase [Janibacter sp. HTCC2649]
          Length = 1103

 Score = 41.6 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 11 SETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLC 67
          +E I L  +   EQ  +   P R   V A AGSGKT  +  RV+  L+AN    P  +L 
Sbjct: 20 AEAIGLPHRPTPEQTAVIEAPLRPLLVIAGAGSGKTETMAARVV-WLVANGFVEPEDVLG 78

Query: 68 LTHTKAAAAEMSHRV 82
          LT T+ AA E+S R+
Sbjct: 79 LTFTRKAATELSDRI 93


>gi|319892948|ref|YP_004149823.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus
          pseudintermedius HKU10-03]
 gi|317162644|gb|ADV06187.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus
          pseudintermedius HKU10-03]
          Length = 731

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++    EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVANMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV  ++
Sbjct: 64 AAKEMKERVQALV 76


>gi|315605038|ref|ZP_07880092.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313317|gb|EFU61380.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 932

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL    A    +L +T T  AAAEM  R   ++        
Sbjct: 107 ILAGAGSGKTRVLTHRIAYLLATGRARAGQILAITFTNKAAAEMRERAGALVGG------ 160

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                 AR + ++           T H+ C  +++     A ++
Sbjct: 161 ---------------------DARRMWVS-----------TFHSACVRLLRYEHEAAGLS 188

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S F I D + S++LI+   K+
Sbjct: 189 SSFTIYDAQDSQRLIQMVLKA 209


>gi|126695666|ref|YP_001090552.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301]
 gi|126542709|gb|ABO16951.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+  N+  P  +L +T T  AA EM  R LE++ A
Sbjct: 29 VVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKGR-LEVLLA 81


>gi|82776253|ref|YP_402602.1| DNA helicase IV [Shigella dysenteriae Sd197]
 gi|81240401|gb|ABB61111.1| DNA helicase IV [Shigella dysenteriae Sd197]
          Length = 684

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R   LL+   A P  +L L   + AA EM  R+ E    W H  D
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLVRGEASPEQILLLAFGRKAAEEMDERIRE----WLHTED 269


>gi|325132192|gb|EGC54888.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M6190]
 gi|325138125|gb|EGC60698.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ES14902]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|237725569|ref|ZP_04556050.1| ATP-dependent helicase [Bacteroides sp. D4]
 gi|229436256|gb|EEO46333.1| ATP-dependent helicase [Bacteroides dorei 5_1_36/D4]
          Length = 1058

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L ++   W  + D+
Sbjct: 12  ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                + KI  + + P +   + A   L  ++      +V+TI +F +++M+    E  +
Sbjct: 70  DSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129

Query: 154 TSHFAI 159
            ++  I
Sbjct: 130 GANLNI 135


>gi|254515937|ref|ZP_05127997.1| DNA helicase II [gamma proteobacterium NOR5-3]
 gi|219675659|gb|EED32025.1| DNA helicase II [gamma proteobacterium NOR5-3]
          Length = 717

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          V A AGSGKT +LV R+  L+ A    P  LL +T T  AA EM  R+  ++   +H
Sbjct: 27 VLAGAGSGKTRVLVHRIAWLIRAEGLSPHALLAVTFTNKAAREMRGRIEHMLQIPTH 83


>gi|15895932|ref|NP_349281.1| ATP-dependent DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15025705|gb|AAK80621.1|AE007765_3 ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
          acetobutylicum ATCC 824]
 gi|325510084|gb|ADZ21720.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
          acetobutylicum EA 2018]
          Length = 756

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  ++     +PS +L +T T  AA EM  RV  +I  
Sbjct: 26 AGAGSGKTRVLTYRIAHMVKDLEIYPSQILAITFTNKAAKEMKDRVKALIGG 77


>gi|309786700|ref|ZP_07681320.1| helicase IV [Shigella dysenteriae 1617]
 gi|308925393|gb|EFP70880.1| helicase IV [Shigella dysenteriae 1617]
          Length = 684

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R   LL+   A P  +L L   + AA EM  R+ E    W H  D
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLVRGEASPEQILLLAFGRKAAEEMDERIRE----WLHTED 269


>gi|309805876|ref|ZP_07699911.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b]
 gi|308167785|gb|EFO69929.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b]
          Length = 577

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|262199184|ref|YP_003270393.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262082531|gb|ACY18500.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 787

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT +LV R+  ++     P  +L +T T  AA EM  R+ E++
Sbjct: 24 VLAGAGTGKTRVLVNRIAHMVDRGVPPRDILAVTFTNKAAKEMRERLRELL 74


>gi|298529833|ref|ZP_07017236.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511269|gb|EFI35172.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1027

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           V A  G+GKT  L+ +V RLL    +P  +L LT T+ AA E+  R++ I
Sbjct: 481 VMAGPGTGKTQTLMGKVSRLLEQEVNPRHILVLTFTRKAARELKDRLISI 530


>gi|212693031|ref|ZP_03301159.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855]
 gi|212664398|gb|EEB24970.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855]
          Length = 1058

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L ++   W  + D+
Sbjct: 12  ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                + KI  + + P +   + A   L  ++      +V+TI +F +++M+    E  +
Sbjct: 70  DSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129

Query: 154 TSHFAI 159
            ++  I
Sbjct: 130 GANLNI 135


>gi|207724952|ref|YP_002255349.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           MolK2]
 gi|206590179|emb|CAQ37140.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           MolK2]
          Length = 710

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  L  RV  L+   A P  +L LT ++ AA+E+S R   ++         
Sbjct: 45  VLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLA-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                   +QG   N    S A     T L   G     T H     +++++     +  
Sbjct: 97  ------RAMQG---NTGTRSAAGTTYQTALPWAG-----TFHGIGARLLREYAERIGLAP 142

Query: 156 HFAIADEEQSKKLI 169
            F I D   S  L+
Sbjct: 143 DFTIHDRSDSADLL 156


>gi|119503547|ref|ZP_01625630.1| DNA helicase II [marine gamma proteobacterium HTCC2080]
 gi|119460609|gb|EAW41701.1| DNA helicase II [marine gamma proteobacterium HTCC2080]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L+ A    P  LL +T T  AA EM  R+  ++        
Sbjct: 27  VLAGAGSGKTRVLVHRMAWLIRAEGVSPHALLSVTFTNKAAREMRSRIESML-------- 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                             D+S              G+ V T H     +++Q   EA + 
Sbjct: 79  ------------------DVSTQ------------GMWVGTFHGLAHRLLKQHWQEAQLP 108

Query: 155 SHFAIADEEQSKKLIE 170
            +F I D +   +L++
Sbjct: 109 QNFQILDSDDQLRLVK 124


>gi|265753493|ref|ZP_06088848.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA]
 gi|263235207|gb|EEZ20731.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA]
          Length = 1058

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95
           A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L ++   W  + D+
Sbjct: 12  ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69

Query: 96  ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                + KI  + + P +   + A   L  ++      +V+TI +F +++M+    E  +
Sbjct: 70  DSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129

Query: 154 TSHFAI 159
            ++  I
Sbjct: 130 GANLNI 135


>gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
           33030]
 gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
           33030]
          Length = 764

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 49/179 (27%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           DL      +Q  A + T S   + A AGSGKT +L +R+  LL      P  +L +T T 
Sbjct: 4   DLTLGLNPQQKAAVEHTGSPLLIVAGAGSGKTAVLTRRIAYLLQERGVAPWEILAITFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV  +I                      P    M                  
Sbjct: 64  KAAAEMKERVGALI---------------------GPQAERMW----------------- 85

Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           V T H+ C  I+ QQ  L   + ++F I D + S++L        L  I  + N +LKK
Sbjct: 86  VATFHSVCVRILRQQAQLVPGLNTNFTIYDGDDSRRL--------LGMIAKEMNLDLKK 136


>gi|240014083|ref|ZP_04720996.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121644|ref|ZP_04734606.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
          PID24-1]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          +V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 20 FVLAGAGSGKTGVITQKMKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|163756939|ref|ZP_02164046.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1]
 gi|161323058|gb|EDP94400.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1]
          Length = 914

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AG+GKT ++ QR++ +L   +  P  ++  T+T+ AAAE+  RVL++
Sbjct: 22 ACAGAGKTQVISQRLVEVLKQKDVEPINVIAFTYTEKAAAELKTRVLKL 70


>gi|73662195|ref|YP_300976.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72494710|dbj|BAE18031.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
          Length = 738

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+++   EQ  A   T     + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4  LVNKMNDEQSQAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  RV
Sbjct: 64 AAKEMKARV 72


>gi|23098214|ref|NP_691680.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776439|dbj|BAC12715.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 741

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+   +  P  +L +T T  AA EM  RV +++
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMGEKDVSPRNILAITFTNKAAREMKERVSKLV 80


>gi|325205799|gb|ADZ01252.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis
          M04-240196]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|319761999|ref|YP_004125936.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317116560|gb|ADU99048.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 796

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+     EQL A + P   A + A AGSGKT +L  R+  LL   +A P  +L +T T  
Sbjct: 14 LLQGLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLSTGHATPGGILAVTFTNK 73

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 74 AAKEMLTRL 82


>gi|297242864|ref|ZP_06926802.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
 gi|296889075|gb|EFH27809.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
          Length = 981

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 127 IGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFTNKAAAEMRERLSNLI 178


>gi|293189079|ref|ZP_06607806.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
 gi|292821993|gb|EFF80925.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
          Length = 944

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL    A    +L +T T  AAAEM  R      A + + D
Sbjct: 106 ILAGAGSGKTRVLTHRIAYLLATGRARAGEILAITFTNKAAAEMRER------AGALVGD 159

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           +                     AR + ++           T H+ C  +++     A ++
Sbjct: 160 D---------------------ARRMWVS-----------TFHSACVRLLRYKHEAAGLS 187

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S F I D + S++LI+   K+
Sbjct: 188 SSFTIYDAQDSQRLIQMVLKA 208


>gi|253995787|ref|YP_003047851.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253982466|gb|ACT47324.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 736

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++   ++QL A + P +SA + A AGSGKT +L  R+  L+      P+ LL +T T  
Sbjct: 11 LLAGLNNKQLEAVTLPQQSALILAGAGSGKTRVLTARIAWLIQTEQVSPTGLLAVTFTNK 70

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 71 AAKEMLTRI 79


>gi|261400922|ref|ZP_05987047.1| DNA helicase II [Neisseria lactamica ATCC 23970]
 gi|269209154|gb|EEZ75609.1| DNA helicase II [Neisseria lactamica ATCC 23970]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|322832278|ref|YP_004212305.1| UvrD/REP helicase [Rahnella sp. Y9602]
 gi|321167479|gb|ADW73178.1| UvrD/REP helicase [Rahnella sp. Y9602]
          Length = 684

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    AHP  +L L   + AA EM+ R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRQEAHPEQILLLAFGRQAADEMNGRIKE 263


>gi|152991215|ref|YP_001356937.1| ATP-dependent DNA helicase UvrD [Nitratiruptor sp. SB155-2]
 gi|151423076|dbj|BAF70580.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp.
          SB155-2]
          Length = 681

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT  +  R+  L+     P+++L LT T  AA EM  R L ++ +
Sbjct: 27 AGAGSGKTKTITTRLAYLISLGIDPASILTLTFTNKAAKEMRERALSMLDS 77


>gi|118467070|ref|YP_883295.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium
          104]
 gi|118168357|gb|ABK69254.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium
          104]
          Length = 1096

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63
          S +E +  + L   T+ +  + + P     V A AG+GKT  +  RV+  L+AN  AHP 
Sbjct: 6  SPRELACALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANGYAHPG 64

Query: 64 TLLCLTHTKAAAAEMSHRV 82
           +L LT T+ AA ++  RV
Sbjct: 65 QVLGLTFTRKAAGQLLRRV 83


>gi|157803783|ref|YP_001492332.1| DNA helicase II [Rickettsia canadensis str. McKiel]
 gi|157785046|gb|ABV73547.1| DNA helicase II [Rickettsia canadensis str. McKiel]
          Length = 661

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM  RV  +I  
Sbjct: 39 AGAGTGKTKVLTSRIANIIYQNLASPHNILAVTFTNKAAKEMVERVHSLINC 90


>gi|41409398|ref|NP_962234.1| hypothetical protein MAP3300c [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41398229|gb|AAS05850.1| hypothetical protein MAP_3300c [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 1096

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63
          S +E +  + L   T+ +  + + P     V A AG+GKT  +  RV+  L+AN  AHP 
Sbjct: 6  SPRELACALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANGYAHPG 64

Query: 64 TLLCLTHTKAAAAEMSHRV 82
           +L LT T+ AA ++  RV
Sbjct: 65 QVLGLTFTRKAAGQLLRRV 83


>gi|329901071|ref|ZP_08272696.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
          IMCC9480]
 gi|327549259|gb|EGF33838.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 753

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQL A + P + A + A AGSGKT +L  R+  L+   A  P+ +L +T T 
Sbjct: 3  NLLHNLNPEQLAAVTLPAQHALILAGAGSGKTRVLTTRIAWLIQNGAVAPNGVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM+ R+
Sbjct: 63 KAAKEMTLRL 72


>gi|239832290|ref|ZP_04680619.1| DNA helicase II [Ochrobactrum intermedium LMG 3301]
 gi|239824557|gb|EEQ96125.1| DNA helicase II [Ochrobactrum intermedium LMG 3301]
          Length = 859

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  R+  ++
Sbjct: 65  VLAGAGTGKTRVLTTRIAHILTTGLAYPSQILAVTFTNKAAREMKERIGHLV 116


>gi|154509660|ref|ZP_02045302.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799294|gb|EDN81714.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC
           17982]
          Length = 900

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL    A    +L +T T  AAAEM  R      A + + D
Sbjct: 106 ILAGAGSGKTRVLTHRIAYLLARGRARAGEILAITFTNKAAAEMRER------AGALVGD 159

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           +                     AR + ++           T H+ C  +++     A ++
Sbjct: 160 D---------------------ARRMWVS-----------TFHSACVRLLRYEHEAAGLS 187

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S F I D + S++LI+   K+
Sbjct: 188 SSFTIYDAQDSQRLIQMVLKA 208


>gi|121635136|ref|YP_975381.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18]
 gi|120866842|emb|CAM10600.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18]
          Length = 690

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 40 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 91


>gi|120613110|ref|YP_972788.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120591574|gb|ABM35014.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 689

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  ++ RL+     P  +  +T T  AAAEM  R   +I
Sbjct: 22 VLAGAGSGKTRVITMKIGRLIETGLEPRRIAAITFTNKAAAEMRERAQHLI 72


>gi|159185029|ref|NP_355024.2| DNA helicase II [Agrobacterium tumefaciens str. C58]
 gi|159140303|gb|AAK87809.2| DNA helicase II [Agrobacterium tumefaciens str. C58]
          Length = 824

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  R+
Sbjct: 73  VLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREMKERI 120


>gi|189466027|ref|ZP_03014812.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM
           17393]
 gi|189434291|gb|EDV03276.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM
           17393]
          Length = 1073

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-WSHLSDE 95
           A+AGSGKT  L    ++ L+ N      +L +T T  A AEM  R+L+ +   W  +SD 
Sbjct: 8   ASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIW--VSDP 65

Query: 96  ILSAEITKI----QGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                + +I    Q K  ++ D+   A   L  +L      +V+TI +F +++M+    E
Sbjct: 66  ASEPYLNRIREDLQRKNLSEDDIRLAAGTALQYMLHDYSRFRVETIDSFFQSVMRNLARE 125

Query: 151 ANITSHFAI 159
             ++ +  I
Sbjct: 126 LELSPNLNI 134


>gi|257075812|ref|ZP_05570173.1| ATP-dependent DNA helicase [Ferroplasma acidarmanus fer1]
          Length = 890

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           R   V +N G+GKT ++   V+ L+     P  +LC+T T  A  E+   +
Sbjct: 3  NRDTLVISNPGTGKTTMISNEVINLIKEGVKPEKILCITFTNNAVGELQKSI 54


>gi|86141573|ref|ZP_01060119.1| putative helicase [Leeuwenhoekiella blandensis MED217]
 gi|85832132|gb|EAQ50587.1| putative helicase [Leeuwenhoekiella blandensis MED217]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+  I+
Sbjct: 25 VIAGAGSGKTRVLTMRIAHLMQQGVDAFNILSLTFTNKAAREMKSRIGTIV 75


>gi|152978934|ref|YP_001344563.1| DNA-dependent helicase II [Actinobacillus succinogenes 130Z]
 gi|150840657|gb|ABR74628.1| DNA helicase II [Actinobacillus succinogenes 130Z]
          Length = 731

 Score = 41.2 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
          SE +D ++  + E + A  P  +  V A AGSGKT +L QR+  L+        +++ +T
Sbjct: 4  SELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTQRIAWLIAVEGISEGSIMAVT 61

Query: 70 HTKAAAAEMSHRVLEIITAWS 90
           T  AAAEM  R+   +  +S
Sbjct: 62 FTNKAAAEMRQRIESALARYS 82


>gi|325996193|gb|ADZ51598.1| ATP-dependent DNA helicase [Helicobacter pylori 2018]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A+AG+GKT  +V R+L LL     P  +L LT T  A+ EM  RV      +S LS +I 
Sbjct: 26  ASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTNKASNEMIARV----AKYSKLSSKIE 81

Query: 98  SAEITKIQGK-----KPNKS--DMSKARHLLITILETPGGL 131
           +     +  +      PN S     + R LL +I++T   L
Sbjct: 82  AGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAL 122


>gi|299131903|ref|ZP_07025098.1| UvrD/REP helicase [Afipia sp. 1NLS2]
 gi|298592040|gb|EFI52240.1| UvrD/REP helicase [Afipia sp. 1NLS2]
          Length = 830

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P  +L +T T  AA EM HR+ E++
Sbjct: 55  VLAGAGTGKTRVLTSRIAHILSQGRARPFEILSVTFTNKAAREMKHRLGEML 106


>gi|254672332|emb|CBA05496.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 21 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72


>gi|323341292|ref|ZP_08081537.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC
          25644]
 gi|323091286|gb|EFZ33913.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC
          25644]
          Length = 756

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          + A AGSGKT +L  RV  L+   N +P  +L +T T  AA EM  R+  ++   S
Sbjct: 38 IMAGAGSGKTRVLTHRVAYLIEHQNVNPWNILAITFTNKAAREMRERIDRLVEYGS 93


>gi|312887473|ref|ZP_07747072.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
 gi|311300113|gb|EFQ77183.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
          Length = 758

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AGSGKT ++  RV  L+        +L LT T  AA EM  R++ +
Sbjct: 26 AGAGSGKTRVITYRVAHLVQKGVDSFNILVLTFTNKAAREMRERIMHV 73


>gi|149914444|ref|ZP_01902975.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b]
 gi|149811963|gb|EDM71796.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b]
          Length = 786

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L +R++ LL   +A PS +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTKRIVHLLNTGSARPSEILAVTFTNKAAREMKSRV 95


>gi|307354471|ref|YP_003895522.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
 gi|307157704|gb|ADN37084.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
          Length = 1004

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          V A  GSGKT ++ +++L ++  N A P  +L LT ++ AAAEM+ R+
Sbjct: 25 VLAGPGSGKTRVITEKILHMIRENGAKPEEILALTFSEKAAAEMAERL 72


>gi|242240110|ref|YP_002988291.1| DNA helicase IV [Dickeya dadantii Ech703]
 gi|242132167|gb|ACS86469.1| UvrD/REP helicase [Dickeya dadantii Ech703]
          Length = 685

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL  A A P  +L L   + AA EM+ RV E
Sbjct: 214 VLAGAGSGKTSVLVARAAWLLRSAQARPEQILLLAFGRQAAEEMNGRVRE 263


>gi|291456202|ref|ZP_06595592.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM
          20213]
 gi|291381479|gb|EFE88997.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM
          20213]
          Length = 1311

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|213692487|ref|YP_002323073.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|213523948|gb|ACJ52695.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|320458632|dbj|BAJ69253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 897

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87


>gi|108563318|ref|YP_627634.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori HPAG1]
 gi|107837091|gb|ABF84960.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
          pylori HPAG1]
          Length = 675

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q   EQL A+   +    + A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6  QLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65

Query: 78 MSHRVLEIITAWSHL 92
          M  RV +   + S +
Sbjct: 66 MIARVAKYFKSSSKI 80


>gi|325911371|ref|ZP_08173783.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D]
 gi|325476721|gb|EGC79875.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D]
          Length = 742

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|260892971|ref|YP_003239068.1| UvrD/REP helicase [Ammonifex degensii KC4]
 gi|260865112|gb|ACX52218.1| UvrD/REP helicase [Ammonifex degensii KC4]
          Length = 707

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+      P  +L LT T  AA EM  RV  ++        
Sbjct: 24  VLAGAGSGKTRVLTYRIAYLITYRGVPPEAILALTFTNKAAEEMRARVTSLL-------- 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P +++                 L V T HA C  +++Q        
Sbjct: 76  --------------PREAE----------------DLWVMTFHAACARLLRQEIHHLGRD 105

Query: 155 SHFAIADEEQSKKLIEE 171
             FAI DE+  + L+ E
Sbjct: 106 RDFAIYDEDDRRALMRE 122


>gi|237746997|ref|ZP_04577477.1| DNA helicase II [Oxalobacter formigenes HOxBLS]
 gi|229378348|gb|EEO28439.1| DNA helicase II [Oxalobacter formigenes HOxBLS]
          Length = 762

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +++     EQL A + P++SA + A AGSGKT +L  R+  LL       S ++ +T T 
Sbjct: 3  NMLENLNPEQLAAVTLPSQSALILAGAGSGKTRVLTTRIAWLLKTGQVSTSGIMAVTFTN 62

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+  +  A
Sbjct: 63 KAAKEMMSRLSTLFPA 78


>gi|207738731|ref|YP_002257124.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           IPO1609]
 gi|206592099|emb|CAQ59005.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           IPO1609]
          Length = 691

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 22/134 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  L  RV  L+   A P  +L LT ++ AA+E+S R   ++      S  
Sbjct: 26  VLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLARAMQGSTG 85

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             SA  T  Q                 T L   G     T H     +++++     +  
Sbjct: 86  TRSAAGTTYQ-----------------TALPWAG-----TFHGIGARLLREYAERIGLAP 123

Query: 156 HFAIADEEQSKKLI 169
            F I D   S  L+
Sbjct: 124 DFTIHDRSDSADLL 137


>gi|190346242|gb|EDK38280.2| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 830

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 37/138 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A  G+GKT +LV RV  LLL +   P  ++  T TK AA EM  R+  ++        
Sbjct: 30  VIAGPGTGKTKVLVSRVAHLLLHDQIPPQQIIVTTFTKKAANEMVSRLRLVL-------- 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                            +D+   R            L V T H+ C  I++++     + 
Sbjct: 82  ---------------QDTDIDVNR------------LMVGTFHSICYRIIKKYGHLIGLE 114

Query: 155 SHFAIADEEQSKKLIEEA 172
             F IADE+ S  L+EE 
Sbjct: 115 G-FTIADEKDSIHLLEEC 131


>gi|71906186|ref|YP_283773.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB]
 gi|71845807|gb|AAZ45303.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB]
          Length = 713

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          DL++   S QL A + P   A + A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 3  DLLANLNSPQLQAVTLPPVHALILAGAGSGKTRVLTTRIAWLISTGQVGPHGVLAVTFTN 62

Query: 73 AAAAEMSHRVLEII 86
           AA EM+ R+  ++
Sbjct: 63 KAAKEMTARLSSLV 76


>gi|319655031|ref|ZP_08009102.1| PcrA protein [Bacillus sp. 2_A_57_CT2]
 gi|317393298|gb|EFV74065.1| PcrA protein [Bacillus sp. 2_A_57_CT2]
          Length = 743

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L++    +P  +L +T T  AA EM  R+
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMVEKGVNPYNILAITFTNKAAREMRDRI 76


>gi|224476962|ref|YP_002634568.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222421569|emb|CAL28383.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 731

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  LL      P  +L +T T  AA EM  RV +++
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLLDEKGVSPYNVLAITFTNKAAREMKERVEKLV 76


>gi|161870316|ref|YP_001599486.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442]
 gi|161595869|gb|ABX73529.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442]
          Length = 690

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AAAEM  RV +++
Sbjct: 40 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 91


>gi|146301512|ref|YP_001196103.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
 gi|146155930|gb|ABQ06784.1| ATP-dependent DNA helicase, Rep family [Flavobacterium johnsoniae
           UW101]
          Length = 787

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV---------LEI 85
           V A AGSGKT  L  R   ++     + S +LC+T T  AA EM  RV         L  
Sbjct: 26  VIAGAGSGKTKALTSRFAYIVDRLGINSSNILCVTFTNKAAQEMKKRVKALIGDTYDLAF 85

Query: 86  ITAWSHLSDEILSAEITKIQGKK 108
           IT +       L  EI KI   K
Sbjct: 86  ITTYHGFCVRFLREEINKIHFPK 108


>gi|317482225|ref|ZP_07941247.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916363|gb|EFV37763.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA]
          Length = 884

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87


>gi|189439490|ref|YP_001954571.1| superfamily I DNA and RNA helicase [Bifidobacterium longum
          DJO10A]
 gi|312132895|ref|YP_004000234.1| uvrd2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688951|ref|YP_004208685.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
          infantis 157F]
 gi|189427925|gb|ACD98073.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum
          DJO10A]
 gi|311773868|gb|ADQ03356.1| UvrD2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460287|dbj|BAJ70907.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
          infantis 157F]
          Length = 900

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87


>gi|50955506|ref|YP_062794.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951988|gb|AAT89689.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 833

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+  L+ +  A PS +L +T T  AA EM  RV +++
Sbjct: 66  IVAGAGSGKTSVLTRRIAGLIESREAWPSEILAITFTNKAANEMRERVEQLL 117


>gi|23465464|ref|NP_696067.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705]
 gi|239622010|ref|ZP_04665041.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
          infantis CCUG 52486]
 gi|23326117|gb|AAN24703.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705]
 gi|239515201|gb|EEQ55068.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
          infantis CCUG 52486]
          Length = 881

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87


>gi|322690920|ref|YP_004220490.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
          longum JCM 1217]
 gi|320455776|dbj|BAJ66398.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
          longum JCM 1217]
          Length = 900

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87


>gi|309804689|ref|ZP_07698754.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           09V1-c]
 gi|309809370|ref|ZP_07703232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312873367|ref|ZP_07733418.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d]
 gi|308166081|gb|EFO68299.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           09V1-c]
 gi|308170281|gb|EFO72312.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311091051|gb|EFQ49444.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d]
          Length = 742

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|282882935|ref|ZP_06291540.1| UvrD/REP helicase [Peptoniphilus lacrimalis 315-B]
 gi|281297346|gb|EFA89837.1| UvrD/REP helicase [Peptoniphilus lacrimalis 315-B]
          Length = 613

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
          T+ ++L+       A V A  G+GKT IL+ R L L+        +L +T +KAA  EMS
Sbjct: 4  TEKQKLVTLHRDGPALVLAVPGAGKTTILLHRTLNLIKTGVDAKRILTITFSKAATNEMS 63

Query: 80 HR 81
           R
Sbjct: 64 KR 65


>gi|326319149|ref|YP_004236821.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375985|gb|ADX48254.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 688

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  ++ RL+     P  +  +T T  AAAEM  R   +I
Sbjct: 22 VLAGAGSGKTRVITMKIGRLIETGLEPRRIAAITFTNKAAAEMRERAQHLI 72


>gi|240129046|ref|ZP_04741707.1| UvrD [Neisseria gonorrhoeae SK-93-1035]
 gi|268687424|ref|ZP_06154286.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035]
 gi|268627708|gb|EEZ60108.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|254506751|ref|ZP_05118891.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16]
 gi|219550332|gb|EED27317.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16]
          Length = 1194

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 11  IEASAGTGKTFTIAGLYLRLLLGHGSSETQHQTPLTVDQILVVTFTEAATAELRDRIRAR 70

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D ++   + +I        D  +A ++L+          V TIH F
Sbjct: 71  IHDARLAFARGQTHDPVIQPLLEEI-------DDHKQAANILLQAERQMDEAAVYTIHGF 123

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 124 CQRMLTQNAFESG 136


>gi|194100011|ref|YP_002003150.1| UvrD [Neisseria gonorrhoeae NCCP11945]
 gi|193935301|gb|ACF31125.1| UvrD [Neisseria gonorrhoeae NCCP11945]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|167039196|ref|YP_001662181.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514]
 gi|300913209|ref|ZP_07130526.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561]
 gi|307723777|ref|YP_003903528.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513]
 gi|166853436|gb|ABY91845.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514]
 gi|300889894|gb|EFK85039.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561]
 gi|307580838|gb|ADN54237.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513]
          Length = 711

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
          A AGSGKT +L  R+  L+      PS +L +T T  AA EM  RV +++     L
Sbjct: 27 AGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKAAEEMKTRVEDLLGYIGDL 82


>gi|59802078|ref|YP_208790.1| hypothetical protein NGO1757 [Neisseria gonorrhoeae FA 1090]
 gi|240017454|ref|ZP_04723994.1| UvrD [Neisseria gonorrhoeae FA6140]
 gi|240118830|ref|ZP_04732892.1| UvrD [Neisseria gonorrhoeae PID1]
 gi|260439632|ref|ZP_05793448.1| UvrD [Neisseria gonorrhoeae DGI2]
 gi|268604542|ref|ZP_06138709.1| DNA helicase II [Neisseria gonorrhoeae PID1]
 gi|291042871|ref|ZP_06568612.1| DNA helicase II [Neisseria gonorrhoeae DGI2]
 gi|293398115|ref|ZP_06642320.1| DNA helicase II [Neisseria gonorrhoeae F62]
 gi|59718973|gb|AAW90378.1| putative DNA helicase II [Neisseria gonorrhoeae FA 1090]
 gi|268588673|gb|EEZ53349.1| DNA helicase II [Neisseria gonorrhoeae PID1]
 gi|291013305|gb|EFE05271.1| DNA helicase II [Neisseria gonorrhoeae DGI2]
 gi|291611378|gb|EFF40448.1| DNA helicase II [Neisseria gonorrhoeae F62]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|312870767|ref|ZP_07730873.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a]
 gi|311093643|gb|EFQ51981.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a]
          Length = 742

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|308125359|ref|ZP_07663372.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308113235|gb|EFO50775.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 738

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           + A  G+GKT  LV+RV  LL     P  +L LT +  AA EM+ R+
Sbjct: 214 LEAGPGTGKTQTLVKRVEGLLDEGVDPRRILILTFSNKAAGEMAERL 260


>gi|228949915|ref|ZP_04112110.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228809766|gb|EEM56192.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 1028

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 33/171 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           T +  ++A AG+GKT++++ R+  LL         ++ +T T A+  EM  R        
Sbjct: 316 TDNLMITAGAGTGKTYVMIDRIFYLLEKVGITLKDIIMVTFTNASTNEMKER-------- 367

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L  ++LS  + K+ G         K ++L     E    +++ TIHAF ++++ Q   
Sbjct: 368 --LQKKLLS--MFKLTG---------KTKYLYFA--EEVKNIQISTIHAFSKSVLTQLAH 412

Query: 150 EANITSHFAIADEEQSK-----KLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           E     +  +    ++K     KL  E  +   A +++D    L   FYE+
Sbjct: 413 EIGFGRNLKVRSFIKTKSDILEKLANEFFQKHPAKVLVD----LNLKFYEV 459


>gi|227494729|ref|ZP_03925045.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831729|gb|EEH64112.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 868

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  LL    A    +L +T T  AAAEM  RV  ++        
Sbjct: 72  VIAGAGSGKTRVLTHRIAYLLQTGRARAGEILAITFTNKAAAEMRERVANLVG------- 124

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                +AR +            V T H+ C  I+++    A + 
Sbjct: 125 --------------------PQARRMW-----------VFTFHSACVRILREQYQAAGLR 153

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S F I D   S++LI    K+
Sbjct: 154 SSFTIYDAADSQRLITLVSKN 174


>gi|119899502|ref|YP_934715.1| DNA helicase II [Azoarcus sp. BH72]
 gi|119671915|emb|CAL95829.1| DNA helicase II [Azoarcus sp. BH72]
          Length = 739

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          P++ A + A AGSGKT +L  R+  L+ +  A P+ +L +T T  AA EM  R+  ++
Sbjct: 19 PSQHALILAGAGSGKTRVLTTRIAWLVQSGQASPAEILAVTFTNKAAKEMHARLAAML 76


>gi|33152168|ref|NP_873521.1| DNA-dependent helicase II [Haemophilus ducreyi 35000HP]
 gi|33148390|gb|AAP95910.1| DNA helicase II [Haemophilus ducreyi 35000HP]
          Length = 729

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 35/137 (25%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           S P  +  V A AGSGKT +L  R+  L+ + +   +++L +T T  AAAEM +R+   +
Sbjct: 19  SAPLGNYLVLAGAGSGKTRVLTHRIAWLMRVEHISEASILAVTFTNKAAAEMRNRIEYTL 78

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           +                          MS    L         G+ V T H+    +++ 
Sbjct: 79  S--------------------------MSSQHRLF--------GMWVGTFHSIAHRLLRS 104

Query: 147 FPLEANITSHFAIADEE 163
             L+AN+   F I D E
Sbjct: 105 HYLDANLPQDFQIMDTE 121


>gi|118580949|ref|YP_902199.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
 gi|118503659|gb|ABL00142.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
          Length = 672

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 11/85 (12%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLE---------IIT 87
           A AGSGKT ++  R++ L+     P+  +L +T T  AA EM  RV           II+
Sbjct: 23  AGAGSGKTQVITTRIVHLIKDRQVPAENILAVTFTNKAAREMRERVASMAGKSSEGIIIS 82

Query: 88  AWSHLSDEILSAEITKIQGKKPNKS 112
            +  L   IL  +I  + G KPN S
Sbjct: 83  TFHSLGVRILRRDIRSL-GFKPNFS 106


>gi|325137063|gb|EGC59659.1| DNA helicase II [Neisseria meningitidis M0579]
 gi|325202934|gb|ADY98388.1| DNA helicase II [Neisseria meningitidis M01-240149]
 gi|325207267|gb|ADZ02719.1| DNA helicase II [Neisseria meningitidis NZ-05/33]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|296454009|ref|YP_003661152.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183440|gb|ADH00322.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 897

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87


>gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein
          [Megasphaera genomosp. type_1 str. 28L]
 gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein
          [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AG+GKT IL  R+  +L    A    +LCLT T  A  E+ HR+ E+I
Sbjct: 24 LQAPAGTGKTAILAHRIAYILACRRAREKEILCLTFTNRACKELQHRLQELI 75


>gi|229917962|ref|YP_002886608.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b]
 gi|229469391|gb|ACQ71163.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b]
          Length = 738

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  RV  L+ A    P  +L +T T  AA EM  R+  ++  
Sbjct: 29 IMAGAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNKAAREMKDRIARLVGG 82


>gi|170751333|ref|YP_001757593.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831]
 gi|170657855|gb|ACB26910.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831]
          Length = 797

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  L+    A P  +L +T T  AA EM HR+  +I
Sbjct: 55  VLAGAGTGKTRVLTTRIAHLIATGRARPFDILAVTFTNKAAREMKHRIGALI 106


>gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
 gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
          Length = 855

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 44/138 (31%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           ++AG+GKT  L  R+  ++  N A    +LCLT T  A  EM  +++E +          
Sbjct: 25  SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153
                    GK+                     GLK  V+T H+FC + I ++     +I
Sbjct: 75  ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104

Query: 154 TSHFAIADEEQSKKLIEE 171
           +  F I DEE +K++I E
Sbjct: 105 SFDFTIYDEEYTKEIISE 122


>gi|15901017|ref|NP_345621.1| exonuclease RexA [Streptococcus pneumoniae TIGR4]
 gi|15903084|ref|NP_358634.1| exonuclease RexA [Streptococcus pneumoniae R6]
 gi|116515444|ref|YP_816490.1| exonuclease RexA [Streptococcus pneumoniae D39]
 gi|81531934|sp|Q97QP9|ADDA_STRPN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA; AltName:
           Full=Exonuclease RexA
 gi|81588100|sp|Q8DPR6|ADDA_STRR6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|122278624|sp|Q04KF8|ADDA_STRP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|14972629|gb|AAK75261.1| exonuclease RexA [Streptococcus pneumoniae TIGR4]
 gi|15458659|gb|AAK99844.1| First subunit of major exonuclease [Streptococcus pneumoniae R6]
 gi|116076020|gb|ABJ53740.1| exonuclease RexA [Streptococcus pneumoniae D39]
          Length = 1216

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+        
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  KIQ       D+   +HL   + + P    + T+ +F +  + +     +I  
Sbjct: 97  ------KKIQ----ETDDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145

Query: 156 HFAIADEEQSKKLIEE 171
           +F I  + QS++LI E
Sbjct: 146 NFRIL-QNQSEQLILE 160


>gi|316933463|ref|YP_004108445.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315601177|gb|ADU43712.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 1133

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 38/136 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A  G+GKT  L+ RV  LL     P  +L LT +  AA EM+ R+             
Sbjct: 214 LEAGPGTGKTQTLIARVEGLLEEGIDPRRILLLTFSNKAAGEMAERIAR----------- 262

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                      K+P                E    + + T HAF   I+++F  E  ++ 
Sbjct: 263 -----------KRP----------------EAAAAMWIGTFHAFGLDIIRRFHAELGLSK 295

Query: 156 HFAIADEEQSKKLIEE 171
              + D  ++ +L+EE
Sbjct: 296 DPRMMDRTEAVELLEE 311


>gi|258647140|ref|ZP_05734609.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259]
 gi|260853104|gb|EEX72973.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259]
          Length = 794

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  +V  LL     P  +L LT T  AA EM  R+ +++
Sbjct: 23 IIAGAGSGKTRVLTYKVAYLLQNGYQPWEILALTFTNKAAREMRERIAQLV 73


>gi|111657164|ref|ZP_01407943.1| hypothetical protein SpneT_02001617 [Streptococcus pneumoniae
           TIGR4]
          Length = 1177

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+        
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  KIQ       D+   +HL   + + P    + T+ +F +  + +     +I  
Sbjct: 97  ------KKIQ----ETDDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145

Query: 156 HFAIADEEQSKKLIEE 171
           +F I  + QS++LI E
Sbjct: 146 NFRIL-QNQSEQLILE 160


>gi|325913324|ref|ZP_08175692.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B]
 gi|325477427|gb|EGC80571.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B]
          Length = 742

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|322375244|ref|ZP_08049757.1| exonuclease RexA [Streptococcus sp. C300]
 gi|321279507|gb|EFX56547.1| exonuclease RexA [Streptococcus sp. C300]
          Length = 562

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|307637600|gb|ADN80050.1| ATP-dependent DNA helicase [Helicobacter pylori 908]
 gi|325997789|gb|ADZ49997.1| ATP-dependent DNA helicase [Helicobacter pylori 2017]
          Length = 678

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
          A+AG+GKT  +V R+L LL     P  +L LT T  A+ EM  RV      +S LS +I
Sbjct: 26 ASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTNKASNEMIARV----AKYSKLSSKI 80


>gi|259501107|ref|ZP_05744009.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335]
 gi|315653835|ref|ZP_07906751.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195]
 gi|259167801|gb|EEW52296.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335]
 gi|315488531|gb|EFU78177.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195]
          Length = 744

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 29  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 82  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 110

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 111 NNFSIADTAEQLTLIK 126


>gi|302877434|ref|YP_003845998.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302580223|gb|ADL54234.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 723

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
          L+S     QL A + P +SA + A AGSGKT +L  R+  L+   A  P  +L +T T  
Sbjct: 15 LLSGLNPPQLQAVTLPRQSALILAGAGSGKTRVLTTRIAYLISTGAVSPHGILAVTFTNK 74

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 75 AAKEMVTRL 83


>gi|27381672|ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA 110]
 gi|27354841|dbj|BAC51826.1| DNA helicase II [Bradyrhizobium japonicum USDA 110]
          Length = 872

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P+ +L +T T  AA EM HR+ +++
Sbjct: 71  VLAGAGTGKTRVLTTRIAHILSQGRARPAEILSVTFTNKAAREMKHRLGQML 122


>gi|83749766|ref|ZP_00946741.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551]
 gi|83723556|gb|EAP70759.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551]
          Length = 710

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 22/134 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT  L  RV  L+   A P  +L LT ++ AA+E+S R   ++      S  
Sbjct: 45  VLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLARAMQGSTG 104

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             SA  T  Q                 T L   G     T H     +++++     +  
Sbjct: 105 TRSAAGTTYQ-----------------TALPWAG-----TFHGIGARLLREYAERIGLAP 142

Query: 156 HFAIADEEQSKKLI 169
            F I D   S  L+
Sbjct: 143 DFTIHDRSDSADLL 156


>gi|329929647|ref|ZP_08283344.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5]
 gi|328935973|gb|EGG32428.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5]
          Length = 673

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          D + +   +Q  A + T     + A AGSGKT +L  R+  L+    A P ++L +T T 
Sbjct: 8  DAVRRLNPQQRQAVEATDGPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWSILAITFTN 67

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV +++
Sbjct: 68 KAAREMQERVSKLV 81


>gi|327470754|gb|EGF16210.1| exonuclease RexA [Streptococcus sanguinis SK330]
          Length = 1224

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++VQR++  +L       L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVRQLFISTFTVKAAGELKERL 91


>gi|254670947|emb|CBA07597.1| DNA helicase II [Neisseria meningitidis alpha153]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|126179428|ref|YP_001047393.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
 gi|125862222|gb|ABN57411.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
          Length = 911

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL-S 93
          + A AG+GKT  L +R++ LLL     PS ++  T T+ AA  M  RV E +    HL  
Sbjct: 36 IIAGAGAGKTETLTRRIVYLLLVQQVEPSAIVAFTFTEKAAQSMKSRVYERV---KHLGG 92

Query: 94 DEI 96
          DEI
Sbjct: 93 DEI 95


>gi|119945195|ref|YP_942875.1| exodeoxyribonuclease V, beta subunit [Psychromonas ingrahamii 37]
 gi|119863799|gb|ABM03276.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychromonas
           ingrahamii 37]
          Length = 1226

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 36/139 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN----AHPSTL-----LCLTHTKAAAAEMSHRVLEII 86
           + A+AG+GKT+ +    +RLLL +    AH   L     L +T T+AA AE+ +R+ E  
Sbjct: 32  IEASAGTGKTYTIASLFIRLLLGHGEQAAHQGPLTVDQILVVTFTEAATAELRNRIRE-- 89

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-------------V 133
                    I    +  IQG    +SD    + LL  +++    ++             +
Sbjct: 90  --------RIQDVRLDFIQG----ESDNPFTQSLLKEVVDHQVAIRLLRFAELQMDEAAI 137

Query: 134 QTIHAFCEAIMQQFPLEAN 152
            TIH FC+ ++ Q   E+ 
Sbjct: 138 FTIHGFCQRMLMQNAFESG 156


>gi|315644888|ref|ZP_07898017.1| UvrD/REP helicase [Paenibacillus vortex V453]
 gi|315279830|gb|EFU43131.1| UvrD/REP helicase [Paenibacillus vortex V453]
          Length = 819

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
           A AGSGKT +LV R   L+ A    P+++L +T +  AAAEM  R++ +
Sbjct: 72  AGAGSGKTSVLVSRTGYLIAAQRVDPASILLVTFSSKAAAEMKERIMAL 120


>gi|254776585|ref|ZP_05218101.1| hypothetical protein MaviaA2_18221 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 1139

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63
           S +E +  + L   T+ +  + + P     V A AG+GKT  +  RV+  L+AN  AHP 
Sbjct: 49  SPRELACALALFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANGYAHPG 107

Query: 64  TLLCLTHTKAAAAEMSHRV 82
            +L LT T+ AA ++  RV
Sbjct: 108 QVLGLTFTRKAAGQLLRRV 126


>gi|282599796|ref|ZP_05971895.2| helicase IV [Providencia rustigianii DSM 4541]
 gi|282567853|gb|EFB73388.1| helicase IV [Providencia rustigianii DSM 4541]
          Length = 692

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           + +++ F +H E+  L     S+ L   +   +  V A AGSGKT +LV R   LLL   
Sbjct: 190 LTHYSDFFQHIESSPL---NNSQSLSVINGEDNVLVLAGAGSGKTSVLVARAGWLLLRGL 246

Query: 60  AHPSTLLCLTHTKAAAAEMSHRV 82
           A P  +L L   + AA EM+ R+
Sbjct: 247 AKPEQILLLAFGRKAAEEMNERI 269


>gi|209694270|ref|YP_002262198.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238]
 gi|208008221|emb|CAQ78366.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238]
          Length = 1208

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 23/136 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +   ++          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIASLYLRLLLGHGDENSRHSEELTVDKILVVTFTEAATAELRERIRAK 82

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNK---------SDMSKARHLLITILETPGGLKVQTI 136
           I    H +    +  + K   K  +          SD   A H+L+    +     + TI
Sbjct: 83  I----HDARLAFARAVHKSDYKSGDPVIDPLLAAISDHKSAAHILLNAERSMDEASIFTI 138

Query: 137 HAFCEAIMQQFPLEAN 152
           H FC+ ++ Q   E+ 
Sbjct: 139 HGFCQRMLTQNAFESG 154


>gi|15829169|ref|NP_326529.1| ATP-dependent helicase PcrA [Mycoplasma pulmonis UAB CTIP]
 gi|14090113|emb|CAC13871.1| ATP-DEPENDENT HELICASE PCRA [Mycoplasma pulmonis]
          Length = 734

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 42/157 (26%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
           +L  + K   +    P R   + A AGSGKT ++  ++  L+      P  +L LT T  
Sbjct: 4   NLNQRQKEAVVYTKGPLR---IIAGAGSGKTRVITSKIAYLIEHEKIAPWKILGLTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R L++I                             KA H           +++
Sbjct: 61  AAREMKERALKMIGP---------------------------KASH-----------VEL 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            T H+ C  I++Q   +     +F I DE   K++++
Sbjct: 83  STFHSLCNVILKQDIDKIGYPKNFEIVDESDKKQILK 119


>gi|119356509|ref|YP_911153.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
          266]
 gi|119353858|gb|ABL64729.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
          266]
          Length = 734

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  R+   L+ N + S   +L LT T  AA EM HRV
Sbjct: 25 VLAGAGSGKTRVITYRIA-WLIKNGYASAKNILALTFTNKAAGEMRHRV 72


>gi|332075466|gb|EGI85935.1| recombination helicase AddA [Streptococcus pneumoniae GA41301]
          Length = 1216

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+        
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  KIQ       D+   +HL   + + P    + T+ +F +  + +     +I  
Sbjct: 97  ------KKIQ----ETDDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145

Query: 156 HFAIADEEQSKKLIEE 171
           +F I  + QS++LI E
Sbjct: 146 NFRIL-QNQSEQLILE 160


>gi|329920500|ref|ZP_08277232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G]
 gi|328936176|gb|EGG32629.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G]
          Length = 742

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|325205321|gb|ADZ00774.1| DNA helicase II [Neisseria meningitidis M04-240196]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|325130964|gb|EGC53691.1| DNA helicase II [Neisseria meningitidis OX99.30304]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|319956827|ref|YP_004168090.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319419231|gb|ADV46341.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 685

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A+ P     + A+AG+GKT  +V R+  LL     P  +L LT T  AA EM  R+
Sbjct: 14 ATAPFGHNLIIASAGTGKTSTIVGRIAYLLQKGVPPEKILLLTFTNKAAGEMVTRL 69


>gi|300021793|ref|YP_003754404.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523614|gb|ADJ22083.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 818

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  R+
Sbjct: 83  VLAGAGTGKTRVLTTRIAHILATGKAYPSQILAVTFTNKAAREMRDRI 130


>gi|254674097|emb|CBA09881.1| DNA helicase II [Neisseria meningitidis alpha275]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|227545941|ref|ZP_03975990.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
          infantis ATCC 55813]
 gi|227213575|gb|EEI81424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
          infantis ATCC 55813]
          Length = 910

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AAAEM  R+  +I
Sbjct: 46 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 97


>gi|221201441|ref|ZP_03574480.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD2M]
 gi|221208004|ref|ZP_03581010.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD2]
 gi|221214000|ref|ZP_03586973.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD1]
 gi|221166177|gb|EED98650.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD1]
 gi|221172189|gb|EEE04630.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD2]
 gi|221178709|gb|EEE11117.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD2M]
          Length = 1236

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEQDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A++ +         D + A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVAKLFETTLAAGGPLDTATAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC
          39073]
 gi|83573758|gb|ABC20310.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC
          39073]
          Length = 729

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  RV  L+     P  +L +T T  AA EM  R+
Sbjct: 28 VLAGAGSGKTRVLTYRVAALIQEGVRPENILAVTFTNKAAQEMKERL 74


>gi|309803805|ref|ZP_07697890.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           11V1-d]
 gi|312873066|ref|ZP_07733125.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1]
 gi|308164039|gb|EFO66301.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           11V1-d]
 gi|311091299|gb|EFQ49684.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1]
          Length = 742

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|304389059|ref|ZP_07371104.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC
          13091]
 gi|304336989|gb|EFM03178.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC
          13091]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|302190445|ref|ZP_07266699.1| superfamily I DNA/RNA helicase [Lactobacillus iners AB-1]
          Length = 742

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|239813421|ref|YP_002942331.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239799998|gb|ACS17065.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 712

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 30/145 (20%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           L A    R   V A AGSGKT  L  RV  L+        LL LT ++ AA EM  R  +
Sbjct: 48  LTAGRDERPLLVIAGAGSGKTSTLAHRVAHLIAGGVDLQRLLLLTFSRRAAQEMERRAGQ 107

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           ++            A +  ++  KP                  P      T H     ++
Sbjct: 108 VL------------ARVLGLKSDKP------------------PALPWAGTFHGIGARLL 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLI 169
           +++     +  HF I D   ++ L+
Sbjct: 138 REYAAHIGLNDHFTIHDRGDAEDLM 162


>gi|197302046|ref|ZP_03167107.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC
           29176]
 gi|197298855|gb|EDY33394.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC
           29176]
          Length = 767

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+   N +P  +L +T T  AA EM  RV  ++   S    
Sbjct: 24  ILAGAGSGKTRVLTHRIAYLIEERNVNPWNILAITFTNKAAGEMRERVDSLVGFGSE--- 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I+++F       
Sbjct: 81  -----------------------------------SIWVSTFHSMCVRILRRFIDRLGYD 105

Query: 155 SHFAIADEEQSKKLIEEAKK 174
           + F I D +  K L++E  K
Sbjct: 106 NRFTIYDTDDQKTLMKEVCK 125


>gi|7414502|emb|CAB86224.1| putative DNA helicase [Prochlorococcus marinus subsp. pastoris str.
           NATL2]
          Length = 304

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 28/187 (14%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT  L  R+  L+      PS++L +T T  AA EM  R LE+          +
Sbjct: 31  AGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNKAAREMKDR-LEL----------L 79

Query: 97  LSAEITKIQGKKPNKS-DMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQ------QFP 148
           L+  ++ +   KP  +  +++ R +   I  E    L + T HA    +++      + P
Sbjct: 80  LAKRLSSLTHGKPWTALQVAEQREIRNRIHREISRELWIGTFHALFSRLLRFDIDKFKDP 139

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIETL 207
                T  F+I DE  ++ LI+E        + LD    E KK  + I    N    + L
Sbjct: 140 EGLTWTKQFSIYDETDAQSLIKEI---VTQDLQLDPKRFEPKKVRWAISNAKN----QCL 192

Query: 208 ISDIISN 214
           + D +SN
Sbjct: 193 LPDDLSN 199


>gi|313159744|gb|EFR59101.1| putative ATP-dependent helicase PcrA [Alistipes sp. HGB5]
          Length = 858

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++     P  +L LT T  AA +M  R+ ++I
Sbjct: 42 IIAGAGSGKTRVLTSRIAYMIEQGVAPFNILALTFTNKAAEQMRERIAQMI 92


>gi|291461061|ref|ZP_06026707.2| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC
           33693]
 gi|291379194|gb|EFE86712.1| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC
           33693]
          Length = 739

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 39/145 (26%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV   
Sbjct: 19  ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERV--- 75

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                    E L  E+ K                             + T H+F   +++
Sbjct: 76  ---------EDLVGEVAK--------------------------SCTISTFHSFGMRLLR 100

Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170
            +  E     +F I D +  K++I+
Sbjct: 101 MYAAEVGYNPNFTIYDTDDQKRIIK 125


>gi|166153980|ref|YP_001654098.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 434/Bu]
 gi|166154855|ref|YP_001653110.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335177|ref|ZP_07223421.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis L2tet1]
 gi|165929968|emb|CAP03451.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 434/Bu]
 gi|165930843|emb|CAP06405.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 1026

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q +LR LL  +   T  +L +T T AA  E+  R+   +     L
Sbjct: 18  FLEASAGTGKTFTIEQVILRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148
             + LS   T +       S  +K + L + I   L T   + + TIH FC   ++Q FP
Sbjct: 78  FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135


>gi|218767076|ref|YP_002341588.1| DNA helicase II [Neisseria meningitidis Z2491]
 gi|6900436|emb|CAB72035.1| DNA helicase II [Neisseria meningitidis]
 gi|121051084|emb|CAM07354.1| DNA helicase II [Neisseria meningitidis Z2491]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|154245373|ref|YP_001416331.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154159458|gb|ABS66674.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 817

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  RV  +L    A+PS +L +T T  AA EM  R+  ++
Sbjct: 60  VLAGAGTGKTRVLTARVAHILSQGRAYPSQILVVTFTNKAAREMKDRIHAMV 111


>gi|312875404|ref|ZP_07735408.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b]
 gi|311089067|gb|EFQ47507.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b]
          Length = 742

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|298369602|ref|ZP_06980919.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282159|gb|EFI23647.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|294102168|ref|YP_003554026.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261]
 gi|293617148|gb|ADE57302.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT +L  ++  L+    A P  +L +T T  AA EM  RV  ++ A
Sbjct: 28 VLAGAGSGKTRVLAHKIAYLIEKGYASPKGILAVTFTNKAAREMGERVQALVGA 81


>gi|225848053|ref|YP_002728216.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644159|gb|ACN99209.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 700

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 47/156 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++  +++ L+ +   P   +L +T T  AA EM  RV            
Sbjct: 27  VLAGAGSGKTKVITHKIMYLVKSLGIPIHRILAITFTNKAAEEMKERV------------ 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   K  G++P                       V T H+F    ++    +    
Sbjct: 75  -------EKALGERPQW---------------------VMTFHSFAAKFLRFEAEKVGYD 106

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            +F I DE+ SKKLI++  K       L+ NEEL K
Sbjct: 107 RNFVIYDEDDSKKLIKKVLKD------LNLNEELIK 136


>gi|218960875|ref|YP_001740650.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729532|emb|CAO80444.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas
           acidaminovorans]
          Length = 732

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 48/163 (29%)

Query: 18  SQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           SQ    QL + +D      V A AGSGKT  L+ R   L+     HP  +L +T T  AA
Sbjct: 15  SQLNERQLEVVTDTENPVLVLAGAGSGKTRSLIYRTAYLIKEKQVHPWNILIVTFTNKAA 74

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+ +++                      P +S                  L V T
Sbjct: 75  RELQERLEKLLNI--------------------PVRS------------------LWVGT 96

Query: 136 IHAFCEAIMQ----QFPLEANITSHFAIADEEQSKKLIEEAKK 174
            HA C  I++      P  AN    F+I DE+  K L+++  K
Sbjct: 97  FHAICCRILRFESAHLPFNAN----FSIYDEDTQKSLLKKIYK 135


>gi|163758971|ref|ZP_02166057.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
 gi|162283375|gb|EDQ33660.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
          Length = 840

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L L  A PS +L +T T  AA EM  R+
Sbjct: 76  VLAGAGTGKTRVLTTRIAHILNLGLAFPSQILSVTFTNKAAREMKERI 123


>gi|148656349|ref|YP_001276554.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148568459|gb|ABQ90604.1| ATP-dependent DNA helicase, Rep family [Roseiflexus sp. RS-1]
          Length = 659

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
          L +    EQ  A + P     V A AGSGKT +L  R+  L++ +   PS +L LT T  
Sbjct: 8  LFASLNPEQRTAVAAPPGPILVRAGAGSGKTRVLTLRIAYLIVEHGVSPSNILALTFTNK 67

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+ ++
Sbjct: 68 AAREMRQRLRDM 79


>gi|2909716|gb|AAC12966.1| exonuclease RexA [Lactococcus lactis subsp. cremoris MG1363]
          Length = 1173

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 28/187 (14%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+E+  R          
Sbjct: 19  KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMR---------- 68

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                L  ++ K    +   SD  +A H L   L+      + T+ +F + + +      
Sbjct: 69  -----LERDLKKA---RQESSDDEEA-HRLTLALQNLSNADIGTMDSFTQKLTKANFNRV 119

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           NI  +F I  ++    LI +     L    L  +E L         IS D+  E LI + 
Sbjct: 120 NIDPNFRILADQTESDLIRQEVFEQLVESYLSADESLN--------ISKDK-FEKLIKNF 170

Query: 212 ISNRTAL 218
             +R  L
Sbjct: 171 SKDRNIL 177


>gi|325129035|gb|EGC51885.1| DNA helicase II [Neisseria meningitidis N1568]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|226226146|ref|YP_002760252.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
 gi|226089337|dbj|BAH37782.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
          Length = 702

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 38/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AGSGKT  L+ RV  L+     P  +L LT T+ +A EM  R   ++   S     
Sbjct: 44  IVAGAGSGKTRTLIHRVAALIRRGIPPHRILLLTFTRRSAQEMLSRCERLVGPASQ---- 99

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                   +QG                            T H     ++++F   A + +
Sbjct: 100 -------SVQGG---------------------------TFHGVAHRLLRRFGPSAGLPA 125

Query: 156 HFAIADEEQSKKLIEEAKKS 175
            F I D+  +  L+  A+ +
Sbjct: 126 DFTILDQSDAGDLMGLARSA 145


>gi|88602638|ref|YP_502816.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
 gi|88188100|gb|ABD41097.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
          Length = 526

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 37/129 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT  L ++++ LLL  +  P++++  T T+ AAA M  R+ + +     L ++ 
Sbjct: 36  AGAGAGKTETLTRKIVSLLLVEHVEPASIVAFTFTEKAAANMKSRIYKRV---KELGEDA 92

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANITS 155
           L A +                           G + V TIH FC  +++ QF   +    
Sbjct: 93  LCARL---------------------------GEMYVGTIHGFCFHLLEDQFGYGS---- 121

Query: 156 HFAIADEEQ 164
            + + DE Q
Sbjct: 122 -WGVLDENQ 129


>gi|315613168|ref|ZP_07888078.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC
           49296]
 gi|315314730|gb|EFU62772.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC
           49296]
          Length = 1217

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|290967937|ref|ZP_06559487.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1
          str. 28L]
 gi|290782076|gb|EFD94654.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1
          str. 28L]
          Length = 738

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          ++A AGSGKT +L  R+  LL     P  +L +T T  AA EM  RV +++
Sbjct: 25 ITAGAGSGKTKVLTCRIAYLLEKGVAPYRILAITFTNKAAKEMRERVEKLV 75


>gi|261749558|ref|YP_003257244.1| putative helicase [Blattabacterium sp. (Periplaneta americana)
          str. BPLAN]
 gi|261497651|gb|ACX84101.1| putative helicase [Blattabacterium sp. (Periplaneta americana)
          str. BPLAN]
          Length = 707

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  R++ ++      PS +L LT T  AA EM  R+
Sbjct: 24 VIAGAGSGKTRVITHRIVHMINNLGIDPSRILALTFTNKAAKEMKMRI 71


>gi|121634106|ref|YP_974351.1| DNA helicase II [Neisseria meningitidis FAM18]
 gi|120865812|emb|CAM09544.1| DNA helicase II [Neisseria meningitidis FAM18]
 gi|325131618|gb|EGC54325.1| DNA helicase II [Neisseria meningitidis M6190]
 gi|325139127|gb|EGC61673.1| DNA helicase II [Neisseria meningitidis ES14902]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|78778691|ref|YP_396803.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str. MIT
          9312]
 gi|78712190|gb|ABB49367.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus
          str. MIT 9312]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+  N+  P  +L +T T  AA EM  R LE++ A
Sbjct: 29 VVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81


>gi|219667567|ref|YP_002458002.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
          DCB-2]
 gi|219537827|gb|ACL19566.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
          DCB-2]
          Length = 755

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     P  +L +T T  AA EM  RV  ++
Sbjct: 24 ILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITFTNKAAQEMRDRVYSLV 74


>gi|325135039|gb|EGC57667.1| DNA helicase II [Neisseria meningitidis M13399]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|296314732|ref|ZP_06864673.1| DNA helicase II [Neisseria polysaccharea ATCC 43768]
 gi|296838466|gb|EFH22404.1| DNA helicase II [Neisseria polysaccharea ATCC 43768]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|123967864|ref|YP_001008722.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601]
 gi|123197974|gb|ABM69615.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+  N+  P  +L +T T  AA EM  R LE++ A
Sbjct: 29 VVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81


>gi|56696067|ref|YP_166421.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3]
 gi|56677804|gb|AAV94470.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3]
          Length = 779

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL+   A P+ +L +T T  AA EM +RV
Sbjct: 31 AGAGTGKTKALTARIVHLLMTGRARPNEILAVTFTNKAAREMKNRV 76


>gi|56477926|ref|YP_159515.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313969|emb|CAI08614.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 740

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          DL++    EQL A + P + A V A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 3  DLLANLNPEQLQAVTLPPQHALVLAGAGSGKTRVLTTRIAWLVQTGQVDPQGVLAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA E+  R+
Sbjct: 63 KAAKELLARL 72


>gi|304384333|ref|ZP_07366744.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973]
 gi|304334649|gb|EFM00931.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973]
          Length = 789

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-------- 87
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+  +++        
Sbjct: 26  VIAGAGSGKTRVLTYKIAHLLNNGFEPWHILALTFTNKAATEMKTRIGHLVSMERARYLN 85

Query: 88  --AWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGG----LKVQTIHA 138
              +  +   IL  E  +I  GK+    D + +R L   I++  G      K  T+HA
Sbjct: 86  MGTFHSVFSHILRTEAERIGFGKQYTIYDENDSRSLCKVIIKEMGLDDKIYKPATVHA 143


>gi|289435096|ref|YP_003464968.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|289171340|emb|CBH27882.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
          Length = 731

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 5  ELVDGLNPEQKRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+  ++  
Sbjct: 65 KAAREMKSRIGNLMGG 80


>gi|291549932|emb|CBL26194.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14]
          Length = 768

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  ++        
Sbjct: 24  ILAGAGSGKTRVLTHRIAYLIGERGVNPWNILAITFTNKAAEEMRQRVDNLVG------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               AE                              + V T H+ C  I+++F       
Sbjct: 77  --FGAE-----------------------------SVWVSTFHSACVRILRRFIDRLGYE 105

Query: 155 SHFAIADEEQSKKLIEE 171
           +HF I D +  K LI+E
Sbjct: 106 NHFTIYDTDDQKTLIKE 122


>gi|28897857|ref|NP_797462.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838039|ref|ZP_01990706.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810]
 gi|260877018|ref|ZP_05889373.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034]
 gi|260899090|ref|ZP_05907531.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466]
 gi|28806070|dbj|BAC59346.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748573|gb|EDM59432.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810]
 gi|308089138|gb|EFO38833.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466]
 gi|308093677|gb|EFO43372.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034]
          Length = 1139

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 26/45 (57%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           A  G+GKT  LV+RV  LL     P  +L LT +  AA EM+ R+
Sbjct: 216 AGPGTGKTQTLVKRVEGLLDEGVDPRRILILTFSNKAAGEMAERL 260


>gi|326443255|ref|ZP_08217989.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1198

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 41/214 (19%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 17  IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV             ++ A +T      P++                PG  ++ T
Sbjct: 77  GELAERV----------RTALVRAGVTDPDAIDPDRP---------------PGEPRIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIML 182
            HAF   ++    L   +     +  +    +L  +  +             STL   +L
Sbjct: 112 YHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDLL 171

Query: 183 DNNEELKKAFY--EILEISNDEDIETLISDIISN 214
             + EL +     E+L   ++E +ETL S  ++N
Sbjct: 172 ALDAELSEHLVRPELLAAHDEELLETLASASLTN 205


>gi|325143147|gb|EGC65493.1| DNA helicase II [Neisseria meningitidis 961-5945]
 gi|325197521|gb|ADY92977.1| DNA helicase II [Neisseria meningitidis G2136]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|325287669|ref|YP_004263459.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
 gi|324323123|gb|ADY30588.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT +L  R+  L+     P  +L LT T  AA EM  R+ +I
Sbjct: 25 VIAGAGSGKTRVLTYRIAYLIQQGVDPYNILSLTFTNKAAREMKVRIADI 74


>gi|294814880|ref|ZP_06773523.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327479|gb|EFG09122.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1200

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 41/214 (19%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 19  IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 78

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV             ++ A +T      P++                PG  ++ T
Sbjct: 79  GELAERV----------RTALVRAGVTDPDAIDPDRP---------------PGEPRIST 113

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIML 182
            HAF   ++    L   +     +  +    +L  +  +             STL   +L
Sbjct: 114 YHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDLL 173

Query: 183 DNNEELKKAFY--EILEISNDEDIETLISDIISN 214
             + EL +     E+L   ++E +ETL S  ++N
Sbjct: 174 ALDAELSEHLVRPELLAAHDEELLETLASASLTN 207


>gi|218296511|ref|ZP_03497239.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218243053|gb|EED09585.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           A V A AGSGKT  +V RV  L+      PS +L +T T  AA EM  R+  ++     
Sbjct: 29 PALVVAGAGSGKTRTVVHRVAYLIARRGVFPSEILAVTFTNKAAEEMKARLKAMVRGAGE 88

Query: 92 L 92
          L
Sbjct: 89 L 89


>gi|308388456|gb|ADO30776.1| DNA helicase II [Neisseria meningitidis alpha710]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|238917480|ref|YP_002930997.1| hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750]
 gi|238872840|gb|ACR72550.1| Hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750]
          Length = 822

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 74/197 (37%), Gaps = 50/197 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+      P  ++ +T T  AA EM  RV            
Sbjct: 23  IIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTNKAAREMKERV------------ 70

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                E T  QG                      G + V T H+ C  I++++       
Sbjct: 71  -----ETTVAQGA---------------------GAVWVSTFHSTCVRILRRYIDRIGYD 104

Query: 155 SHFAIADEEQSKKLIEE-AKKSTLASIMLDN----------NEELKKAFYEILEISNDED 203
           ++F I D +  K +I++  KK  + + ML             +ELK      LE  ND +
Sbjct: 105 NNFTIYDTDDQKSVIKDICKKMNIDTKMLKERAIMSKISSAKDELKTPDEFELEAGNDYN 164

Query: 204 IETLISDIISNRTALKL 220
           +  +       +  LKL
Sbjct: 165 LRRIAGVYREYQKTLKL 181


>gi|15613211|ref|NP_241514.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
 gi|10173262|dbj|BAB04367.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 747

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  RV +++     ++D+I
Sbjct: 39 AGAGSGKTRVLTHRIAYLLREKGVAPWNVLAITFTNKAAREMKDRVAQLV---GPIADDI 95


>gi|163938296|ref|YP_001643180.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis
          KBAB4]
 gi|163860493|gb|ABY41552.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis
          KBAB4]
          Length = 747

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 8  QEHSETID-LISQTKSEQLLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANA-HPST 64
          Q H  T D L++    +Q  A   T  A +  A AGSGKT +L  R+  LL      P  
Sbjct: 2  QAHMSTTDKLLNGLNPQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65 LLCLTHTKAAAAEMSHRVLEII 86
          +L +T T  AA EM  R+ +++
Sbjct: 62 VLAITFTNKAAREMRERIDKLV 83


>gi|325203353|gb|ADY98806.1| DNA helicase II [Neisseria meningitidis M01-240355]
          Length = 735

 Score = 40.8 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|313680112|ref|YP_004057851.1| ATP-dependent DNA helicase, rep family [Oceanithermus profundus
          DSM 14977]
 gi|313152827|gb|ADR36678.1| ATP-dependent DNA helicase, Rep family [Oceanithermus profundus
          DSM 14977]
          Length = 719

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A V A AGSGKT  +V RV  LL     +P+ +L +T T  AA EM  R+  ++
Sbjct: 25 ALVIAGAGSGKTRTVVHRVAYLLAEREVYPAEVLAVTFTNKAAGEMRERLSRMV 78


>gi|309808887|ref|ZP_07702768.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           01V1-a]
 gi|308167885|gb|EFO70022.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           01V1-a]
          Length = 742

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S A  + ++           T HA C  I++++  +    
Sbjct: 80  --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108

Query: 155 SHFAIADEEQSKKLIE 170
           ++F+IAD  +   LI+
Sbjct: 109 NNFSIADTAEQLTLIK 124


>gi|292670877|ref|ZP_06604303.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541]
 gi|292647498|gb|EFF65470.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541]
          Length = 747

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  LL     P  +L +T T  AA EM  RV  +I
Sbjct: 24 IVAGAGSGKTRVLTFRIANLLEHAVPPYRILAITFTNKAAREMRDRVDTLI 74


>gi|86160294|ref|YP_467079.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776805|gb|ABC83642.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1111

 Score = 40.8 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 25/148 (16%)

Query: 38  ANAGSGKTHILVQRVL-RLLLANAHPSTLL----CLTHTKAAAAEMSHRVLEIITAWSHL 92
           A AG+GKT +LV R++ R+   +  P+  L     +T T+ AA E+  R+ E       L
Sbjct: 28  AGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRKAAGELRLRIREA------L 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
              +  A++T+++            R  L   L       V TIH+F + +++  P+EA 
Sbjct: 82  LRALARADLTELR------------RRRLADALSALDTAHVGTIHSFADRLLRLRPVEAR 129

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI 180
           ++  + I +++    L++EA  + L ++
Sbjct: 130 LSPSYDIVEDDAP--LVDEAFAAFLHAV 155


>gi|33865451|ref|NP_897010.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. WH
           8102]
 gi|33632620|emb|CAE07432.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus
           sp. WH 8102]
          Length = 1186

 Score = 40.8 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 29/144 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84
           + A+AG+GKT  L    LRL+   A P  +LL +T T AAAAE+  R+          LE
Sbjct: 17  LEASAGTGKTFALAHLTLRLISEAAMPLPSLLVVTFTDAAAAELRSRIGQRLQDALAGLE 76

Query: 85  IITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE- 141
            +     L  +D +L     +    +  +  +S+    ++  LE      + TIH FC  
Sbjct: 77  AVARGDALPKADSVLQQWWQQAPQGQSRRDWISR----VLMALEQLDAADITTIHGFCSR 132

Query: 142 ----------AIMQQFPLEANITS 155
                     A MQQ  LE + T+
Sbjct: 133 SLRRQAINSGAAMQQ-QLETDATA 155


>gi|254526415|ref|ZP_05138467.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str.
          MIT 9202]
 gi|221537839|gb|EEE40292.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str.
          MIT 9202]
          Length = 802

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+  N+  P  +L +T T  AA EM  R LE++ A
Sbjct: 29 VVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81


>gi|242280176|ref|YP_002992305.1| exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638]
 gi|242123070|gb|ACS80766.1| Exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638]
          Length = 1059

 Score = 40.8 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 28/147 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC---------------LTHTKAAAAEMS 79
           V A+AGSGKT+ L  R L LL  A    S  +C               +T T  AAAEM 
Sbjct: 5   VKASAGSGKTYELTGRFLSLLAGAQEEDSVPVCKSSQGKGYCWPEIMAVTFTNKAAAEMK 64

Query: 80  HRVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            RV+  +   +  +  + L A+   +  KK            LI IL+    L ++TI +
Sbjct: 65  ERVIRSLKNRALDIEGDGLGADWKPLDAKKQ-----------LIPILQRYNRLNIRTIDS 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS 165
               +++ F LE  ++  F +  E Q+
Sbjct: 114 LLNLLVRIFALELGLSPEFELLFEPQA 140


>gi|16800937|ref|NP_471205.1| ATP-dependent DNA helicase [Listeria innocua Clip11262]
 gi|16414372|emb|CAC97101.1| ATP-dependent DNA helicase [Listeria innocua Clip11262]
          Length = 731

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 5  ELVDGLNPEQRKAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+  ++  
Sbjct: 65 KAAREMKSRIGNLMGG 80


>gi|332034769|gb|EGI71309.1| hypothetical protein PH505_du00060 [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 650

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          S  +S  AGSGKT+ LV+ +L+ +L     +++ C+T+T AA  E+  RV
Sbjct: 27 SFLLSGGAGSGKTYSLVE-ILKAVLVENPTTSIACITYTNAAVDEIEERV 75


>gi|255994849|ref|ZP_05427984.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
 gi|255993562|gb|EEU03651.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
          Length = 753

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT ++  R+  L+L  N  P  +L +T T  AA EM  R
Sbjct: 34 VLAGAGSGKTKMMTHRMAYLILEKNVDPQNILAVTFTNKAANEMKQR 80


>gi|227822621|ref|YP_002826593.1| DNA helicase II [Sinorhizobium fredii NGR234]
 gi|227341622|gb|ACP25840.1| DNA helicase II [Sinorhizobium fredii NGR234]
          Length = 871

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  R+
Sbjct: 64  VLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAAREMKERI 111


>gi|167645425|ref|YP_001683088.1| UvrD/REP helicase [Caulobacter sp. K31]
 gi|167347855|gb|ABZ70590.1| UvrD/REP helicase [Caulobacter sp. K31]
          Length = 804

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           EQ  A + T     V A AG+GKT +L  R+  +L    A P  LL +T T  AA EM  
Sbjct: 50  EQRAAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVTFTNKAAREMRE 109

Query: 81  RVLEII 86
           R+  II
Sbjct: 110 RITHII 115


>gi|221231865|ref|YP_002511017.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae ATCC 700669]
 gi|251764564|sp|B8ZQ32|ADDA_STRPJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|220674325|emb|CAR68871.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae ATCC 700669]
          Length = 1216

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILNQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|148995044|ref|ZP_01823987.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68]
 gi|168488979|ref|ZP_02713178.1| recombination helicase AddA [Streptococcus pneumoniae SP195]
 gi|147926887|gb|EDK77936.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68]
 gi|183572407|gb|EDT92935.1| recombination helicase AddA [Streptococcus pneumoniae SP195]
 gi|332073494|gb|EGI83973.1| recombination helicase AddA [Streptococcus pneumoniae GA17570]
          Length = 1216

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+        
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  KIQ       D+   +HL   + + P    + T+ +F +  + +     +I  
Sbjct: 97  ------KKIQ----ETDDVDLKQHLGCQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145

Query: 156 HFAIADEEQSKKLIE 170
           +F I   +  + L+E
Sbjct: 146 NFRILQNQSEQLLLE 160


>gi|325690487|gb|EGD32490.1| exonuclease RexA [Streptococcus sanguinis SK115]
          Length = 1224

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++VQR++  +L       L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVRQLFISTFTVKAAGELKERL 91


>gi|224418438|ref|ZP_03656444.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491]
 gi|253827754|ref|ZP_04870639.1| putative helicase [Helicobacter canadensis MIT 98-5491]
 gi|313141969|ref|ZP_07804162.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491]
 gi|253511160|gb|EES89819.1| putative helicase [Helicobacter canadensis MIT 98-5491]
 gi|313131000|gb|EFR48617.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491]
          Length = 674

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          P+    + A+AG+GKT  +V R+  LL +   P+ +L LT T  AA EM  R+
Sbjct: 17 PSGYNLIIASAGTGKTSTIVGRISYLLESGILPNEILLLTFTNKAAQEMLKRL 69


>gi|167947687|ref|ZP_02534761.1| DNA helicase II [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 127

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
          S  +D +++ + + +  S P  +  + A AGSGKT +LV R+  L+   A  P ++L +T
Sbjct: 4  SPILDPLNEAQRDAV--SAPVGNLLILAGAGSGKTRVLVHRIAWLMAVEATSPWSILAVT 61

Query: 70 HTKAAAAEMSHRVLEII 86
           T  AA EM  R+ E++
Sbjct: 62 FTNKAAKEMRGRIEELM 78


>gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [Desulfitobacterium hafniense Y51]
 gi|89336085|dbj|BAE85680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 760

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     P  +L +T T  AA EM  RV  ++
Sbjct: 29 ILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITFTNKAAQEMRDRVYSLV 79


>gi|30249444|ref|NP_841514.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
 gi|30138807|emb|CAD85384.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
          Length = 744

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          L++    EQL A   + +SA V A AGSGKT +L  R+  LL +    P  +L +T T  
Sbjct: 4  LLTDLNPEQLEAVTWSHQSALVLAGAGSGKTRVLTTRIAYLLQSGRTRPQNILAVTFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 64 AAREMVARI 72


>gi|329928663|ref|ZP_08282517.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
 gi|328937626|gb|EGG34041.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85
           A AGSGKT +LV R   L+ A +  PS++L +T +  AA EM  R++ +
Sbjct: 72  AGAGSGKTSVLVSRTGYLIAAKSVDPSSILLVTFSSKAATEMKERIMAL 120


>gi|325977976|ref|YP_004287692.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177904|emb|CBZ47948.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 1168

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 22/155 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94
           VSA+AGSGKT ++V+R++  +L       L   T T  AA E+  R+ + I+ A    +D
Sbjct: 2   VSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKISQALQETTD 61

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                            +D+    +  +  L+T     + T+ AF + ++ Q+     I+
Sbjct: 62  -----------------NDLKNYLNEQLLGLQTA---DIGTMDAFTQKLVNQYGYTLGIS 101

Query: 155 SHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             F I  D+ +   L  E      +  M  N+ EL
Sbjct: 102 PTFRIMTDKSEQDILKNEVFFDLFSDYMTGNDAEL 136


>gi|209542394|ref|YP_002274623.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530071|gb|ACI50008.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 760

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D + +   EQ  A + T     V A AG+GKT +L  R   +LL+  A P  +L +T T 
Sbjct: 35  DYLQRLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPYQILAVTFTN 94

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                       E   GL 
Sbjct: 95  KAAREMRERIGALLG--------------------------------------EPVEGLW 116

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           + T HA C  ++++      + S F I D +   +L+++
Sbjct: 117 LGTFHALCARMLRRHAEYVGLGSGFTILDTDDQLRLLKQ 155


>gi|162147772|ref|YP_001602233.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786349|emb|CAP55931.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
          Length = 743

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D + +   EQ  A + T     V A AG+GKT +L  R   +LL+  A P  +L +T T 
Sbjct: 18  DYLQRLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPYQILAVTFTN 77

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                       E   GL 
Sbjct: 78  KAAREMRERIGALLG--------------------------------------EPVEGLW 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           + T HA C  ++++      + S F I D +   +L+++
Sbjct: 100 LGTFHALCARMLRRHAEYVGLGSGFTILDTDDQLRLLKQ 138


>gi|116074476|ref|ZP_01471738.1| UvrD/REP helicase [Synechococcus sp. RS9916]
 gi|116069781|gb|EAU75533.1| UvrD/REP helicase [Synechococcus sp. RS9916]
          Length = 795

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  + A P+ +L +T T  AA EM  R LE++     L+ 
Sbjct: 24  VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LELL-----LAQ 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA-- 151
            + S++  +     P      + R L   I  E    L + T HA   A M +F ++   
Sbjct: 78  RLASSQFGQPWSTLP----AVEQRQLRSRIYREVTKELWIGTFHALF-ARMLRFDIDKFK 132

Query: 152 -----NITSHFAIADEEQSKKLIEE 171
                  T  F+I DE  ++ L++E
Sbjct: 133 DAEGLTWTKQFSIYDEADAQSLVKE 157


>gi|325971006|ref|YP_004247197.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324026244|gb|ADY13003.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 672

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  R+  +L       ++L LT T  AA EM  R+
Sbjct: 26 VIAGAGSGKTRMLTYRIANMLQNGIKEESILALTFTNKAAKEMGERI 72


>gi|260436511|ref|ZP_05790481.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus
           sp. WH 8109]
 gi|260414385|gb|EEX07681.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus
           sp. WH 8109]
          Length = 1206

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV----------LE 84
           + A+AG+GKT  L    LRL+  A+     LL +T T AAA E+  R+          LE
Sbjct: 19  LEASAGTGKTFALAHLCLRLITEADYALEALLVVTFTDAAAEELRSRIGQRLQQSLQGLE 78

Query: 85  IITAWSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            +      S  D +L+  ++   G +P ++     R LL+  LE      + TIH FC  
Sbjct: 79  RLEQGMEASAPDTVLADWLS---GSEPGEARQRWIRRLLVA-LEQLDRADITTIHGFCRR 134

Query: 143 IMQQFPL 149
            +++  L
Sbjct: 135 SLRRLAL 141


>gi|170732538|ref|YP_001764485.1| exodeoxyribonuclease V subunit beta [Burkholderia cenocepacia
           MC0-3]
 gi|169815780|gb|ACA90363.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 1235

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 25  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 85  TGDDGGDPFIARLLETTLGDDGALDSETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142


>gi|92118249|ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91801143|gb|ABE63518.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis
           X14]
          Length = 833

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P  +L +T T  AA EM HR+ +++
Sbjct: 55  VLAGAGTGKTRVLTTRIAHILSQGRARPGEILSVTFTNKAAREMKHRLGQML 106


>gi|254245830|ref|ZP_04939151.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184]
 gi|124870606|gb|EAY62322.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184]
          Length = 1235

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 25  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 85  TGDDGGDPFIARLLETTLGDDGALDSETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142


>gi|107022291|ref|YP_620618.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU
           1054]
 gi|105892480|gb|ABF75645.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU
           1054]
          Length = 2007

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 25  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 85  TGDDGGDPFIARLLETTLGDDGALDSGTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142


>gi|229816023|ref|ZP_04446344.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM
           13280]
 gi|229808337|gb|EEP44118.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM
           13280]
          Length = 950

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 46/162 (28%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           ID ++  + E +L ++      V A AGSGKT +L  R+ R++      P  +L +T T 
Sbjct: 82  IDTLNPAQREAVLTTEG--PLLVLAGAGSGKTRVLTFRIARMIGDLGIRPWQILAITFTN 139

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R               LSA +       P+                  GG++
Sbjct: 140 KAAAEMRER---------------LSAML-------PD------------------GGMR 159

Query: 133 ---VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
              V T HA C  ++++       T  F I D++ S++++ E
Sbjct: 160 GMWVCTFHAMCVRMLREDADLLGYTGQFTIYDDDDSRRMVRE 201


>gi|296169029|ref|ZP_06850691.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896288|gb|EFG75947.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 1135

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           MI   S  E ++ + L   T+ +  + + P     V A AG+GKT  +  RV+  L+AN 
Sbjct: 44  MIPRFSPAELADALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANG 102

Query: 60  -AHPSTLLCLTHTKAAAAEMSHRV 82
            A P  +L LT T+ AA ++  RV
Sbjct: 103 YAEPGQVLGLTFTRKAAGQLLRRV 126


>gi|255076889|ref|XP_002502109.1| ATP-dependent DNA helicase [Micromonas sp. RCC299]
 gi|226517374|gb|ACO63367.1| ATP-dependent DNA helicase [Micromonas sp. RCC299]
          Length = 907

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83
           P     V A  GSGKT +LV RV  L+      PS +LC+T T  AA EM  R++
Sbjct: 70  PVAPMKVLAGPGSGKTRVLVGRVTHLINELGVPPSHILCITFTNKAAREMRERLV 124


>gi|167752257|ref|ZP_02424384.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM
          17216]
 gi|167660498|gb|EDS04628.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM
          17216]
          Length = 813

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          S+ +  ++Q + + ++  D    + + A AGSGKT +L  R+  ++     P  +L LT 
Sbjct: 3  SQILKGLNQAQRDAVVNYD--SPSLIIAGAGSGKTRVLTSRIAYMIEQGVAPYNILALTF 60

Query: 71 TKAAAAEMSHRVLEIITAWSH 91
          T  AA +M  R+ +++    H
Sbjct: 61 TNKAAEQMRERIAQMLPDGRH 81


>gi|125622886|ref|YP_001031369.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|251764529|sp|A2RH77|ADDA_LACLM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|124491694|emb|CAL96613.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069624|gb|ADJ59024.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 1203

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 28/187 (14%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+E+  R          
Sbjct: 19  KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMR---------- 68

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                L  ++ K    +   SD  +A H L   L+      + T+ +F + + +      
Sbjct: 69  -----LERDLKKA---RQESSDDEEA-HRLTLALQNLSNADIGTMDSFTQKLTKANFNRV 119

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           NI  +F I  ++    LI +     L    L  +E L         IS D+  E LI + 
Sbjct: 120 NIDPNFRILADQTESDLIRQEVFEQLVESYLSADESLN--------ISKDK-FEKLIKNF 170

Query: 212 ISNRTAL 218
             +R  L
Sbjct: 171 SKDRNIL 177


>gi|161525258|ref|YP_001580270.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|189350004|ref|YP_001945632.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|160342687|gb|ABX15773.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|189334026|dbj|BAG43096.1| exodeoxyribonuclease V beta subunit [Burkholderia multivorans ATCC
           17616]
          Length = 1236

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEQDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A++ +         D + A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVAKLFETTLAAGGPLDAATAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|20807099|ref|NP_622270.1| superfamily I DNA/RNA helicase [Thermoanaerobacter tengcongensis
          MB4]
 gi|20515591|gb|AAM23874.1| Superfamily I DNA and RNA helicases [Thermoanaerobacter
          tengcongensis MB4]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  L+      PS +L +T T  AA EM  RV
Sbjct: 33 AGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAEEMKTRV 78


>gi|56477159|ref|YP_158748.1| hypothetical protein ebA3053 [Aromatoleum aromaticum EbN1]
 gi|56313202|emb|CAI07847.1| similar to ATP-dependent DNA helicase,putative replication protein
           [Aromatoleum aromaticum EbN1]
          Length = 660

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 38/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++  ++  L+ A   +P  +  +T T  AA EM  RV  ++        
Sbjct: 22  VLAGAGSGKTRVITHKIAHLINACGLNPVNIAAITFTNKAAKEMQERVAGLMGG------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            PGGL V T HA    I++Q      + 
Sbjct: 76  -------------------------------RVPGGLTVCTFHALGVKIVRQEAKHCGLK 104

Query: 155 SHFAIADEEQSKKLI 169
             F+I D   + +++
Sbjct: 105 PQFSILDASDTVQIV 119


>gi|150017986|ref|YP_001310240.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149904451|gb|ABR35284.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 691

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           D + +  V+AN GSGKT +L+ +++ L  A N     ++ LT T  AA E+  R++    
Sbjct: 20  DESDACVVNANVGSGKTTVLISKIVYLHYAKNISYKDMIVLTFTNKAANEIKERLM---- 75

Query: 88  AWSHLSDEILSAE 100
               +SDE + +E
Sbjct: 76  ----VSDESIKSE 84


>gi|94984975|ref|YP_604339.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
 gi|94555256|gb|ABF45170.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
          Length = 741

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++Q    Q  A++  T  A V A AGSGKT  LV R+  L+      P  +L +T T  
Sbjct: 9  LLAQLNPNQAQAANHYTGPALVIAGAGSGKTRTLVYRIAHLIGHYGVDPGEILAVTFTNK 68

Query: 74 AAAEMSHRVLEIITAWSHL 92
          AAAEM  R   ++     L
Sbjct: 69 AAAEMRERARHLVEGADRL 87


>gi|158426099|ref|YP_001527391.1| DNA helicase II [Azorhizobium caulinodans ORS 571]
 gi|158332988|dbj|BAF90473.1| DNA helicase II [Azorhizobium caulinodans ORS 571]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  R+  ++
Sbjct: 89  VLAGAGTGKTRVLTTRIAHILSQGRAYPSQILAVTFTNKAAREMKERIHAMV 140


>gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium
          sp. Marseille]
 gi|151281327|gb|ABR89737.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium
          sp. Marseille]
          Length = 760

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A + P + A + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3  NLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAKEMMTRL 72


>gi|172056503|ref|YP_001812963.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum
          255-15]
 gi|171989024|gb|ACB59946.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum
          255-15]
          Length = 741

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
          L+S    EQ  A   T     + A AGSGKT +L  RV  L+ A    P  +L +T T  
Sbjct: 8  LVSGLNPEQAKAVKHTDGPLLIMAGAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNK 67

Query: 74 AAAEMSHRVLEIITA 88
          AA EM  R+  ++  
Sbjct: 68 AAREMRDRISRLVGG 82


>gi|301310450|ref|ZP_07216389.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3]
 gi|300832024|gb|EFK62655.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3]
          Length = 779

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 5  EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62

Query: 72 KAAAAEMSHRVLEI 85
            AA EM  R+  I
Sbjct: 63 NKAAREMKERIAAI 76


>gi|261409570|ref|YP_003245811.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10]
 gi|261286033|gb|ACX68004.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10]
          Length = 776

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          D + +   +Q  A + T     + A AGSGKT +L  R+  L+    A P ++L +T T 
Sbjct: 8  DAVRRLNPQQRQAVEATDGPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWSILAITFTN 67

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV +++
Sbjct: 68 KAAREMQERVSKLV 81


>gi|123966427|ref|YP_001011508.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9515]
 gi|123200793|gb|ABM72401.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9515]
          Length = 1212

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 12/124 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L   + ++ L  
Sbjct: 15  VEASAGTGKSFTLAHLVLRNVLEKKIKPEEILLLSFTKNTCSELKDKIL---SRFNKLKS 71

Query: 95  EILSAEITKIQG------KKPNKSDMSKARHL--LITILETPGGLKVQTIHAFCEAIMQQ 146
            + + + T+I         K +K +      +  +   +     LKV T HAFC  I+++
Sbjct: 72  FLQNHDDTEIDDTLLEWYDKYHKEEKYPENIIFEIDNFVNAFYKLKVTTFHAFCNNILEE 131

Query: 147 FPLE 150
           + ++
Sbjct: 132 YSID 135


>gi|118580565|ref|YP_901815.1| exodeoxyribonuclease V, beta subunit [Pelobacter propionicus DSM
           2379]
 gi|118503275|gb|ABK99757.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pelobacter
           propionicus DSM 2379]
          Length = 1203

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 10/123 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL-EIITAWSHLS 93
           + A+AG+GKT+ +    LRL++ ++  P  +L +T+T+AA  E+  R+   I  A    S
Sbjct: 17  IEASAGTGKTYAIACLYLRLVIESDLTPEQILVVTYTEAATEELRGRIRSRIRQALDTFS 76

Query: 94  -----DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                D  L   + K+  + P +     AR+ L   L++     + TIH FC   +Q   
Sbjct: 77  GTVSKDPFLLGLVQKVNKEGPGE---DIARNRLDRALKSFDLASIFTIHGFCLRALQDNA 133

Query: 149 LEA 151
            E+
Sbjct: 134 FES 136


>gi|116689237|ref|YP_834860.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
           HI2424]
 gi|116647326|gb|ABK07967.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
           HI2424]
          Length = 1235

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 25  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 85  TGDDGGDPFIARLLETTLGDDGALDSGTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142


>gi|306835613|ref|ZP_07468623.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC
           49726]
 gi|304568504|gb|EFM44059.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC
           49726]
          Length = 847

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 11  SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68
           +E+  L      +QL A   T R   + A AGSGKT +L +R+  L+     +P  +L +
Sbjct: 44  AESDPLTQGLNPQQLEAVTHTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEILAI 103

Query: 69  THTKAAAAEMSHRVLEII 86
           T T  AAAEM  RV  ++
Sbjct: 104 TFTNKAAAEMKERVGSLV 121


>gi|306831079|ref|ZP_07464240.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426645|gb|EFM29756.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 1210

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 22/155 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94
           VSA+AGSGKT ++V+R++  +L       L   T T  AA E+  R+ + I+ A    +D
Sbjct: 45  VSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKISQALQETTD 104

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                            +D+    +  +  L+T     + T+ AF + ++ Q+     I+
Sbjct: 105 -----------------NDLKNYLNEQLLGLQTA---DIGTMDAFTQKLVNQYGYTLGIS 144

Query: 155 SHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             F I  D+ +   L  E      +  M  N+ EL
Sbjct: 145 PTFRIMTDKSEQDILKNEVFFDLFSDYMTGNDAEL 179


>gi|229821382|ref|YP_002882908.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229567295|gb|ACQ81146.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1136

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRV 82
          P     V A AGSGKT  +  RV   L+AN+   PS +L LT T+ AA+E++ RV
Sbjct: 39 PLEPMLVVAGAGSGKTATMTDRV-TYLVANSLVRPSEVLGLTFTRKAASELAERV 92


>gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas arsenicoxydans]
 gi|133737450|emb|CAL60493.1| DNA helicase II [Herminiimonas arsenicoxydans]
          Length = 762

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A + P + A + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3  NLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAKEMMTRL 72


>gi|332174077|gb|AEE23331.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 947

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NA 60
           +Y N F +  E+  L  + +   ++  D   S  + A AG+GKT ++V R   LL +  A
Sbjct: 226 LYRNYF-DTVESNPLTEKQRRASVIDDD---SNLLLAGAGTGKTSVMVARAGYLLTSEQA 281

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT---KIQGKKPNKS 112
            P  +L L + K AA EM  R+ + +   S  +    S  +T   +++GK+P+ S
Sbjct: 282 RPEEILLLAYGKKAATEMDERIKDKLGIDSIKTSTFHSLGLTIISQVEGKQPSLS 336


>gi|329955139|ref|ZP_08296096.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056]
 gi|328526138|gb|EGF53157.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056]
          Length = 785

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 49/139 (35%), Gaps = 37/139 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+             
Sbjct: 29  VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI------------- 75

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                          +  + +ARHL +            T H+    I+         TS
Sbjct: 76  -------------ARQVGIERARHLWMG-----------TFHSIFLRILHAEAARIGFTS 111

Query: 156 HFAIADEEQSKKLIEEAKK 174
            F I D   SK L+    K
Sbjct: 112 KFTIYDTADSKSLLRSIIK 130


>gi|327314682|ref|YP_004330119.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326944136|gb|AEA20021.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 1094

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 8/127 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSD- 94
           A+AGSGKT  L    + L++ N      +L +T T  A  EM  R+L  +   +H L D 
Sbjct: 10  ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHHLPDS 69

Query: 95  EILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +    ++ +  G +    + + ++A  LL          +VQTI AF +++++    E N
Sbjct: 70  QAYFDQVVRKTGFQETVIRENAAEALSLLTHHYNE---FRVQTIDAFFQSVLRNLARELN 126

Query: 153 ITSHFAI 159
           +T++  I
Sbjct: 127 LTANLRI 133


>gi|255018267|ref|ZP_05290393.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          F2-515]
          Length = 241

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  R+  ++  
Sbjct: 67 KAAREMKSRIGNLMGG 82


>gi|322387878|ref|ZP_08061485.1| exonuclease RexA [Streptococcus infantis ATCC 700779]
 gi|321141151|gb|EFX36649.1| exonuclease RexA [Streptococcus infantis ATCC 700779]
          Length = 1216

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 19/134 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L        L   T T  AA E+  R+           ++
Sbjct: 42  VSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELKERL-----------EK 90

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +S +I + Q       DM   +HL   + + P    + T+ +F +  + +     ++  
Sbjct: 91  KISQQIQETQ-------DMELKKHLGRQLADLPNA-AIGTMDSFTQKFLAKHGYLIDLAP 142

Query: 156 HFAIADEEQSKKLI 169
           +F I + E  + L+
Sbjct: 143 NFRILENESEQLLL 156


>gi|288927546|ref|ZP_06421393.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330380|gb|EFC68964.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 823

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 39/157 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D +++++ E ++ +D  +   V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 5   LDKLNESQREAVVYTDGPQ--LVIAGAGSGKTRVLTFKIAYLLQQGLKPWNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                              A+HL +           
Sbjct: 63  AANEMKARIGNLV--------------------------GHEGAKHLFMG---------- 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            T H+    I++        +S+F I DE  S+ LI+
Sbjct: 87  -TFHSIFSRILRVEAPRIGFSSNFTIYDETDSRSLIK 122


>gi|256113967|ref|ZP_05454750.1| DNA helicase II [Brucella melitensis bv. 3 str. Ether]
 gi|265995308|ref|ZP_06107865.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether]
 gi|262766421|gb|EEZ12210.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether]
          Length = 858

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  R+  ++
Sbjct: 65  VLAGAGTGKTRVLTTRIAHILSTGLAYPSQILAVTFTNKAAREMKERIGHLV 116


>gi|225852895|ref|YP_002733128.1| ATP-dependent DNA helicase PcrA [Brucella melitensis ATCC 23457]
 gi|256045044|ref|ZP_05447945.1| DNA helicase II [Brucella melitensis bv. 1 str. Rev.1]
 gi|256263623|ref|ZP_05466155.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565357|ref|ZP_05835841.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|265991470|ref|ZP_06104027.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1]
 gi|225641260|gb|ACO01174.1| ATP-dependent DNA helicase pcrA [Brucella melitensis ATCC 23457]
 gi|260151425|gb|EEW86519.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|263002254|gb|EEZ14829.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093675|gb|EEZ17680.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409437|gb|ADZ66502.1| ATP-dependent DNA helicase PcrA [Brucella melitensis M28]
 gi|326539143|gb|ADZ87358.1| ATP-dependent DNA helicase pcrA [Brucella melitensis M5-90]
          Length = 858

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  R+  ++
Sbjct: 65  VLAGAGTGKTRVLTTRIAHILSTGLAYPSQILAVTFTNKAAREMKERIGHLV 116


>gi|170696477|ref|ZP_02887603.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M]
 gi|170138630|gb|EDT06832.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M]
          Length = 1233

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   L  +     
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 86

Query: 92  LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           L D+     I ++      P +  D   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 87  LDDDGGDPFIRRLFETTLAPERGIDRETALKVVRRALRTFDQAAIHTIHAFCQRALQE 144


>gi|298375530|ref|ZP_06985487.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19]
 gi|298268030|gb|EFI09686.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19]
          Length = 778

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 3  EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 60

Query: 72 KAAAAEMSHRVLEI 85
            AA EM  R+  I
Sbjct: 61 NKAAREMKERIAAI 74


>gi|257092577|ref|YP_003166218.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
          str. UW-1]
 gi|257045101|gb|ACV34289.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
          str. UW-1]
          Length = 724

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          DL++     QL A + P + A + A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 3  DLLANLNPPQLAAVTLPAQHALILAGAGSGKTRVLTTRIAWLISTGQVGPQGILAVTFTN 62

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  ++
Sbjct: 63 KAAKEMQSRLAAML 76


>gi|255013887|ref|ZP_05286013.1| putative helicase [Bacteroides sp. 2_1_7]
          Length = 780

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 5  EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62

Query: 72 KAAAAEMSHRVLEI 85
            AA EM  R+  I
Sbjct: 63 NKAAREMKERIAAI 76


>gi|150007586|ref|YP_001302329.1| putative helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936010|gb|ABR42707.1| putative helicase [Parabacteroides distasonis ATCC 8503]
          Length = 780

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 5  EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62

Query: 72 KAAAAEMSHRVLEI 85
            AA EM  R+  I
Sbjct: 63 NKAAREMKERIAAI 76


>gi|298244729|ref|ZP_06968535.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297552210|gb|EFH86075.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 959

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 2  IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-A 60
          +YH    E  + I  IS  +   L+ + P          GSGKTH +    + LLL+  A
Sbjct: 9  LYHGRMNEEQQAI--ISHREGPLLVIAGP----------GSGKTHSITLLAMNLLLSGEA 56

Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           PS L+  T+T+ AA EM  R+  I  A  + +D
Sbjct: 57 TPSQLILCTYTEKAALEMQDRLAGIAKAVDYRTD 90


>gi|159900168|ref|YP_001546415.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893207|gb|ABX06287.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 641

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 40/139 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  R+  L+   A   +++ +T T  AA+E+  R+ +++         
Sbjct: 22  VKAGAGSGKTRVLTYRIAYLIEQGASSDSIVSVTFTNKAASELRTRLRDLL--------- 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF--PLEANI 153
                     GK+                     GL   T HA C  +++Q       N 
Sbjct: 73  ----------GKRSR-------------------GLTAGTFHAICGKLLRQHINGRIRNY 103

Query: 154 TSHFAIADEEQSKKLIEEA 172
           T++F I   ++  +L+++A
Sbjct: 104 TANFTIYAGDEQLQLVQQA 122


>gi|108757579|ref|YP_629768.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622]
 gi|108461459|gb|ABF86644.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622]
          Length = 783

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V + AGSGKT ++ +RV  L+ + N +P  +L +T T  AA EM  R+++++ A
Sbjct: 32 VLSGAGSGKTRVITRRVAYLVKVHNVYPWRILAVTFTNKAAREMRERLVQLLGA 85


>gi|271962781|ref|YP_003336977.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505956|gb|ACZ84234.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021]
          Length = 762

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 39/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  LL    A P  +L +T T  AA EM  RV  +I   S    
Sbjct: 43  IVAGAGSGKTRVLTHRIAYLLGERGAQPQEILAITFTNKAAREMKDRVDNLIGPRS---- 98

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I+++        
Sbjct: 99  ----------------------------------AAMWVMTFHSACVRILRREAKRLGFP 124

Query: 155 SHFAIADEEQSKKLI 169
           S F+I D+  S++L+
Sbjct: 125 SSFSIYDQADSQRLM 139


>gi|251772975|gb|EES53533.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum]
          Length = 1166

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 10/118 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94
           + A+AG+GKT  L Q  L  +L+      +L +T T+AA  E+  R+  +++ A SH   
Sbjct: 18  IEASAGTGKTFALTQLYLAAVLSGVPVEQILVVTFTEAATDELRGRLRTLLSHARSHALG 77

Query: 95  EILSAEITKIQG--KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                EI  +    +  + + +S+A   L      P    V TIH+FC  +++++  E
Sbjct: 78  VAPPPEILPLVADVRPEHLTLLSRA---LFDFDRAP----VATIHSFCRRVLREYAFE 128


>gi|240169399|ref|ZP_04748058.1| exonuclease V beta subunit recB [Mycobacterium kansasii ATCC 12478]
          Length = 1089

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 29/153 (18%)

Query: 25  LLASDPTRSAWV--SANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81
           LL   P   A +   A+AG+GKT  L   V R L   +     +L +T  +AA+ E+  R
Sbjct: 6   LLGPLPAHGATIVLEASAGTGKTFALAGLVTRYLAETDVTLDEMLLITFNRAASRELRER 65

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL---------- 131
           V           D+I++A +  + G+ P  +D+   RHLL +  E    L          
Sbjct: 66  V----------RDQIVAA-VAALDGRMPTDTDL--VRHLLGSEAERAVRLARLRDALANF 112

Query: 132 ---KVQTIHAFCEAIMQQFPLEANITSHFAIAD 161
               + T H FC ++++   +  +  S F + +
Sbjct: 113 DAATIATTHEFCGSVLRSLGVAGDSDSGFTLRE 145


>gi|154483242|ref|ZP_02025690.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC
           27560]
 gi|149736050|gb|EDM51936.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC
           27560]
          Length = 780

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+   +  P  ++ +T T  AA EM  RV +I+        
Sbjct: 28  ILAGAGSGKTRVLTHRIAYLIEEKHVQPYNIMAITFTNKAAGEMRERVNKIVG------- 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               AE                              + V T H+ C  I++++      +
Sbjct: 81  --FGAE-----------------------------QVWVSTFHSACVRILRRYIDRIGYS 109

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           + F I D E  KKL+++  K+
Sbjct: 110 NDFTIYDTEDQKKLLKDVIKN 130


>gi|88860009|ref|ZP_01134648.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas
           tunicata D2]
 gi|88818003|gb|EAR27819.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas
           tunicata D2]
          Length = 1183

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 16/130 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA------NAHPST---LLCLTHTKAAAAEMSHRVLE-I 85
           + A+AG+GKT+ +    LR LL          P T   +L +T T+AA AE+  RV + I
Sbjct: 17  IEASAGTGKTYTITALYLRHLLGLQVAGQTGVPLTVEQILVVTFTEAATAEIKDRVRKRI 76

Query: 86  ITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I A     D ++  +     +Q      S+   A  LL    ++     + TIH FC+ +
Sbjct: 77  ILA----RDALMGGDCDDAVVQAILSEVSETKMAFALLDAAAKSMDDAAIFTIHGFCQRM 132

Query: 144 MQQFPLEANI 153
           ++Q   E+ +
Sbjct: 133 LKQHAFESGV 142


>gi|256839771|ref|ZP_05545280.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13]
 gi|256738701|gb|EEU52026.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13]
          Length = 778

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 3  EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 60

Query: 72 KAAAAEMSHRVLEI 85
            AA EM  R+  I
Sbjct: 61 NKAAREMKERIAAI 74


>gi|253575957|ref|ZP_04853291.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786
          str. D14]
 gi|251844751|gb|EES72765.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786
          str. D14]
          Length = 661

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
          +S+   +Q  A + T     + A AGSGKT +L  R+  L+    A P  +L +T T  A
Sbjct: 16 VSRLNPQQRQAVEATEGPLLIMAGAGSGKTRVLTHRIAYLIATRKAPPWAILAITFTNKA 75

Query: 75 AAEMSHRVLEIITA 88
          A EM  RV  ++  
Sbjct: 76 AREMQDRVSRLVGG 89


>gi|238924183|ref|YP_002937699.1| ATP-dependent DNA helicase [Eubacterium rectale ATCC 33656]
 gi|238875858|gb|ACR75565.1| ATP-dependent DNA helicase [Eubacterium rectale ATCC 33656]
          Length = 617

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
          V A  GSGKT ++  R  +L+   +  PS +L +T TKAAA EM  R
Sbjct: 20 VLAGPGSGKTAVITHRTKKLITKHHVKPSEILVITFTKAAANEMKER 66


>gi|152964961|ref|YP_001360745.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151359478|gb|ABS02481.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 1125

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 13/146 (8%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A+AG+GKT+ +   V R +    A    LL +T  +AA AE+  RV E + A
Sbjct: 18  PVATTVLEASAGTGKTYTIAGLVTRYVAEGVATVDQLLVVTFGRAATAELRDRVRERLVA 77

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL---KVQTIHAFCEAIMQ 145
                 +  SA  ++        +D ++A      + E   G     V TIH FC  ++ 
Sbjct: 78  TRDALADPASARRSRDAVLAHLAADDARAAEHRARLSEALAGFDTATVATIHEFCRQVL- 136

Query: 146 QFPLEANITSHFAIADEEQSKKLIEE 171
                   TS    AD + S  L+E+
Sbjct: 137 --------TSLGTAADVDPSATLVED 154


>gi|326387191|ref|ZP_08208801.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326208372|gb|EGD59179.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 764

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
          E +  +++ + E +L++D      + A AG+GKT  L  R+  LL    A PS +LC+T 
Sbjct: 14 EWLSRLNEPQREAVLSTDG--PVLMLAGAGTGKTAALTARLAWLLRQRLAWPSEILCVTF 71

Query: 71 TKAAAAEMSHRVLEII 86
          T  AA EM  RV  +I
Sbjct: 72 TNKAAREMRERVGHLI 87


>gi|298293080|ref|YP_003695019.1| UvrD/REP helicase [Starkeya novella DSM 506]
 gi|296929591|gb|ADH90400.1| UvrD/REP helicase [Starkeya novella DSM 506]
          Length = 833

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D ++  + E + A+D      V A AG+GKT +L  R+  +L L  A PS +L +T T 
Sbjct: 68  LDGLNPEQREAVEATDG--PVLVLAGAGTGKTRVLTTRIAHILSLGLAWPSQILAVTFTN 125

Query: 73  AAAAEMSHRVLEII 86
            AA EM  R+  ++
Sbjct: 126 KAAREMKERIHAMV 139


>gi|326791279|ref|YP_004309100.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326542043|gb|ADZ83902.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 681

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           KS++   +   +   V A  GSGKTH+++ RV  ++   N  P  +L +T +K AA EM
Sbjct: 4  NKSQKQAVTCLLKPTLVIAGPGSGKTHVIINRVHYMIEQLNCAPQHILVVTFSKLAAEEM 63

Query: 79 SHRVLEI 85
            R  +I
Sbjct: 64 KQRYEKI 70


>gi|256374998|ref|YP_003098658.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919301|gb|ACU34812.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 1349

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 4  HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--H 61
          H S  + ++ + L   T  +  + + P   A V A AG+GKT  +  RV+  L+AN    
Sbjct: 18 HASPADIADALGLHPPTPEQAAVIASPAAPALVVAGAGAGKTETMAARVV-YLVANGVVT 76

Query: 62 PSTLLCLTHTKAAAAEMSHRV 82
          P  +L LT T+ AA ++  RV
Sbjct: 77 PDRVLGLTFTRKAARQLGERV 97


>gi|317153478|ref|YP_004121526.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943729|gb|ADU62780.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 715

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT  +V R+  L+     P+ +L LT T+ AA EM  R   I+
Sbjct: 24 VIAGAGSGKTRTIVYRLAHLVRQGVDPAQILLLTFTRKAAQEMLARAGAIL 74


>gi|271501509|ref|YP_003334535.1| UvrD/REP helicase [Dickeya dadantii Ech586]
 gi|270345064|gb|ACZ77829.1| UvrD/REP helicase [Dickeya dadantii Ech586]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM+ R+LE
Sbjct: 214 VLAGAGSGKTSVLVARAAWLLHRGEASPQQILLLAFGRQAAEEMNSRILE 263


>gi|261365712|ref|ZP_05978595.1| DNA helicase II [Neisseria mucosa ATCC 25996]
 gi|288565733|gb|EFC87293.1| DNA helicase II [Neisseria mucosa ATCC 25996]
          Length = 735

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9  NLLQGLNLEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|217968706|ref|YP_002353940.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506033|gb|ACK53044.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 663

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 38/137 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++  ++  L+      P+ +  +T T  AA EM  RV  I+        
Sbjct: 22  VLAGAGSGKTRVITHKIAHLINECGISPNNIAAITFTNKAAKEMQERVAHIMGG------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            PGGL V T HA    I++Q      + 
Sbjct: 76  -------------------------------RVPGGLTVCTFHALGVRIVRQEAKHCGLK 104

Query: 155 SHFAIADEEQSKKLIEE 171
             F+I D   + +++ +
Sbjct: 105 PQFSILDASDTVQIVSD 121


>gi|110680547|ref|YP_683554.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114]
 gi|109456663|gb|ABG32868.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM +RV E++
Sbjct: 50 AGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFTNKAAREMKNRVGEML 99


>gi|329767683|ref|ZP_08259202.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341]
 gi|328839033|gb|EGF88621.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341]
          Length = 1212

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 31/130 (23%)

Query: 30  PTRSAW-----------VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77
           PT   W           V+A AGSGKT +L +R+ R +         LL LT T AAA  
Sbjct: 18  PTPPQWQAIAITGADVLVAAAAGSGKTEVLSERIARKVATKRWDIDRLLVLTFTTAAAKN 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M      I+     +S+ +LS        K+ +   + K R L+           V TI 
Sbjct: 78  M------IVRIEDKISERLLST------NKEEDLLFLRKQRMLM-------NDAYVSTID 118

Query: 138 AFCEAIMQQF 147
           +FC  ++++F
Sbjct: 119 SFCLNVLKKF 128


>gi|315655698|ref|ZP_07908596.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
 gi|315489762|gb|EFU79389.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
          Length = 1191

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 15/197 (7%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T+ +  + + P     V A AGSGKT  +  R++  ++ A   P  +L LT T+ AAAEM
Sbjct: 26  TQEQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAEM 85

Query: 79  SHRVLEIITAWSHLSDEI----LSAEITKIQGKKPNKSDMSKARHLLITILE---TPGGL 131
           + R    +  ++ L + +     +AE+T +   K    D+++ R    T+++   TP  L
Sbjct: 86  AARFSLRLDRFASLLESVQERRQTAEVTAVL--KAADFDLNQLRQRFDTLVQRGMTPEML 143

Query: 132 K----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           +    V T  ++   ++ +F       S F    +    +++ +  +S   ++      E
Sbjct: 144 RHPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGE 203

Query: 188 LKKAFYEI-LEISNDED 203
             +    I L ++ND +
Sbjct: 204 NAENLVNILLSLANDTN 220


>gi|312114573|ref|YP_004012169.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219702|gb|ADP71070.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100]
          Length = 793

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  LL  + A P+ +L +T T  AA EM  RV +++
Sbjct: 54  VLAGAGTGKTRVLTTRMAHLLWTHRARPNEILAVTFTNKAAREMKERVGKLV 105


>gi|323525707|ref|YP_004227860.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1001]
 gi|323382709|gb|ADX54800.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1001]
          Length = 1235

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   L  +     
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 86

Query: 92  LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           L D+     I ++      P +  D   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 87  LDDDGGDPFIRRLFETTLAPERGIDREAALKVVRRALRTFDQAAIHTIHAFCQRALQE 144


>gi|262381917|ref|ZP_06075055.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297094|gb|EEY85024.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 780

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
          E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 5  EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62

Query: 72 KAAAAEMSHRVLEI 85
            AA EM  R+  I
Sbjct: 63 NKAAREMKERIAAI 76


>gi|322417761|ref|YP_004196984.1| UvrD/REP helicase [Geobacter sp. M18]
 gi|320124148|gb|ADW11708.1| UvrD/REP helicase [Geobacter sp. M18]
          Length = 730

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++V R+  L+      P  +L +T T  AA EM  RV            
Sbjct: 24  VLAGAGSGKTRVIVHRIAYLIHELGVPPWQILAVTFTNKAAGEMRERV------------ 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                  RH+L    ETP    + T H+ C  I++         
Sbjct: 72  -----------------------RHMLGE-GETP---LISTFHSTCARILRSDIKSLGYD 104

Query: 155 SHFAIADEEQSKKLIEE 171
           S+FAI D++  ++L++E
Sbjct: 105 SNFAIYDDKDCERLLKE 121


>gi|172038900|ref|YP_001805401.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700354|gb|ACB53335.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 772

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 24/182 (13%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           +++ +SQ    Q +A +       V A AGSGKT  L  R+  L+      P ++L +T 
Sbjct: 4   SVNFLSQLNPSQRIAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEIT-KIQGKKPNK-SDMSKARHLLITILETP 128
           T  AA EM  R+           + + + E+  K  G+  N  S+  + R L     +T 
Sbjct: 64  TNKAAREMKDRL-----------ERLFAQEMALKHHGQPFNSLSEYDQKRLLSQVYKKTT 112

Query: 129 GGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLASIML 182
             L + T H+ C  I++    ++  E   T   +F+I DE   + L+   K   L    L
Sbjct: 113 KKLWIGTFHSLCARILRYDINKYQDERKRTWERNFSIFDESDVQSLV---KNIVLKQFNL 169

Query: 183 DN 184
           D+
Sbjct: 170 DD 171


>gi|165975830|ref|YP_001651423.1| exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165875931|gb|ABY68979.1| exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 1202

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88
           +A + A+AG+GKT  +    LRLLL     S     +L +T TKAA  E+  R+   I A
Sbjct: 14  TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73

Query: 89  WSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIM 144
                 E  + +   I     +   + +  +   L + I E    L  + TIH+FC+ ++
Sbjct: 74  CRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQKML 133

Query: 145 QQFPLEANI 153
            QF  ++ +
Sbjct: 134 FQFAFDSGM 142


>gi|148262658|ref|YP_001229364.1| exodeoxyribonuclease V, beta subunit [Geobacter uraniireducens Rf4]
 gi|146396158|gb|ABQ24791.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter
           uraniireducens Rf4]
          Length = 1085

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 14/123 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT------A 88
           + A+AG+GKT  +    LRL+L        +L +T T+AA  E+  R+ E +       A
Sbjct: 17  IEASAGTGKTFTIAGIYLRLVLERQLAVGDILVVTFTEAATKELRERIRERLREAENAFA 76

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
               SD +L+       G   +  D + AR LL T L +     + TIH FC+ ++Q+ P
Sbjct: 77  IGTSSDRLLA-------GLLESAIDRAAARRLLTTALRSFDEASIFTIHGFCQRMLQENP 129

Query: 149 LEA 151
            E+
Sbjct: 130 FES 132


>gi|148266336|ref|YP_001233042.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
 gi|146399836|gb|ABQ28469.1| ATP-dependent DNA helicase PcrA [Geobacter uraniireducens Rf4]
          Length = 744

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 44/158 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT ++V R+  L+   + P   +L +T T  AA EM  RV +++        
Sbjct: 24  ILAGAGSGKTRVIVHRIAYLIKERSVPPWQILAVTFTNKAAGEMRERVEKLLGG------ 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G+ P                       + T H+ C  I+++        
Sbjct: 78  -----------GELP----------------------LISTFHSACARILRREIHHLGYD 104

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++FAI D++ ++KL++E     +A + LD      K+F
Sbjct: 105 ANFAIYDDKDAEKLLKE----IVAELNLDEKRYPVKSF 138


>gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
 gi|10175602|dbj|BAB06699.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
          Length = 1129

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 43/188 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-------------AHPSTLLCLTHTKAAAAEMSHRV 82
           +SA AGSGKT +L +R + +                 A    L+ +T T+ AA EM  R+
Sbjct: 22  LSAGAGSGKTRVLTERFVHICEQKWQETQNDLEASFGAEVDELVAITFTEKAAREMKERI 81

Query: 83  LEIITAWSHLSDEILSAEITKIQGK----KPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +       L +++  A+     G+    +  K  + +AR              + T H+
Sbjct: 82  RQ------RLLEKVEEAKAHGDAGQMIFWQKQKEGLERAR--------------ISTFHS 121

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC+ ++ ++  EA I   F + DE ++  +    K+  L  +  D    L+  F ++LE 
Sbjct: 122 FCQRLLLEYAQEAGIPPTFIVLDEVEAAIM----KREILDDLFQD--ALLRPLFAKLLEC 175

Query: 199 SNDEDIET 206
                +E+
Sbjct: 176 YTKRSLES 183


>gi|16330097|ref|NP_440825.1| DNA helicase II [Synechocystis sp. PCC 6803]
 gi|1652584|dbj|BAA17505.1| DNA helicase II [Synechocystis sp. PCC 6803]
          Length = 793

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLS 93
           V A AGSGKT  L  R+  L+  +  +P  +L +T T  AA EM  R+ +I   AW+   
Sbjct: 30  VVAGAGSGKTRALTYRIAHLIRQHRINPENILAVTFTNKAAKEMKERLEKIFAQAWAQQE 89

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ------QF 147
                ++  ++ GK   K  +S+    +   +  P  L + T H+ C  I++      Q 
Sbjct: 90  ----FSQRWELLGKYEQKQLLSR----VYKTVTKP--LWIGTFHSLCSRILRYDIDKYQD 139

Query: 148 PLEANITSHFAIADEEQSKKLIE 170
                 T  F+I DE   + L +
Sbjct: 140 SSGRRWTKQFSIFDESDVQSLFK 162


>gi|323342977|ref|ZP_08083208.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463041|gb|EFY08236.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 715

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 44/142 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R++ L+     +PS +  +T T  AA EM  R+  ++        
Sbjct: 24  VIAGAGSGKTRVLTTRIVHLIADLGYYPSKICAITFTNKAANEMKERMEAML-------- 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ--TIHAFCEAIMQQFPLEAN 152
                                            P  ++V   TIH+ C  I+++     N
Sbjct: 76  ---------------------------------PDAIRVHTSTIHSLCVRIIREEYEALN 102

Query: 153 ITSHFAIADEEQSKKLIEEAKK 174
           +  +F I D    + ++ EA K
Sbjct: 103 LVRNFTILDTSDQQAVMREAYK 124


>gi|227875827|ref|ZP_03993953.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|227843575|gb|EEJ53758.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243]
          Length = 900

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 81/226 (35%), Gaps = 62/226 (27%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + P  +  V A AGSGKT +L +R+  LL      P  +L +T T  AA EM  RV    
Sbjct: 67  THPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERV---- 122

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                   E L     K                           + V T H+ C  I++ 
Sbjct: 123 --------ETLVGNAAKY--------------------------MWVSTFHSSCVRILRA 148

Query: 147 FPLEANITSHFAIADEEQSKKLIEE------------AKKSTLASIMLDNNEELKKAFYE 194
                 IT  F+I D   +K L+                KS  A I    NE ++ A + 
Sbjct: 149 EAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNELVEPATFA 208

Query: 195 ILEISNDEDIETLISDIISNRTAL--KLIFFFFS-------YLWRR 231
             E++  + I  L ++I +    L  +   F F        YLWRR
Sbjct: 209 --EMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRR 252


>gi|149921690|ref|ZP_01910138.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1]
 gi|149817428|gb|EDM76900.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1]
          Length = 845

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 33/137 (24%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AG+GKT ++ QRV  L+        +L +T T  AA EM  R+             +L
Sbjct: 26  AGAGTGKTRVITQRVAALIDEGVPAWRILAVTFTNKAAGEMRERIA-----------GLL 74

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
             E+ +++   P                       + T H+ C  I+++      +T +F
Sbjct: 75  EMELDELRRDGP----------------------WIGTFHSICARILRRHGQGVGLTRNF 112

Query: 158 AIADEEQSKKLIEEAKK 174
           +I D +  K L+    K
Sbjct: 113 SIYDADDQKTLMRRVLK 129


>gi|307700275|ref|ZP_07637315.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
 gi|307614486|gb|EFN93715.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
          Length = 900

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 81/226 (35%), Gaps = 62/226 (27%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + P  +  V A AGSGKT +L +R+  LL      P  +L +T T  AA EM  RV    
Sbjct: 67  THPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERV---- 122

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                   E L     K                           + V T H+ C  I++ 
Sbjct: 123 --------ETLVGNAAKY--------------------------MWVSTFHSSCVRILRA 148

Query: 147 FPLEANITSHFAIADEEQSKKLIEE------------AKKSTLASIMLDNNEELKKAFYE 194
                 IT  F+I D   +K L+                KS  A I    NE ++ A + 
Sbjct: 149 EAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNELVEPATFA 208

Query: 195 ILEISNDEDIETLISDIISNRTAL--KLIFFFFS-------YLWRR 231
             E++  + I  L ++I +    L  +   F F        YLWRR
Sbjct: 209 --EMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRR 252


>gi|229818113|ref|ZP_04448395.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM
          20098]
 gi|229784717|gb|EEP20831.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM
          20098]
          Length = 1288

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT+ + +R++ L+     P  +L LT T+ AA E+  RV   + A
Sbjct: 24 VVAGAGSGKTYTMTRRIVSLIEHGVAPERILGLTFTRKAAGELLSRVSAAVLA 76


>gi|298345279|ref|YP_003717966.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235340|gb|ADI66472.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
          Length = 1191

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 15/197 (7%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T+ +  + + P     V A AGSGKT  +  R++  ++ A   P  +L LT T+ AAAEM
Sbjct: 26  TQEQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAEM 85

Query: 79  SHRVLEIITAWSHLSDEI----LSAEITKIQGKKPNKSDMSKARHLLITILE---TPGGL 131
           + R    +  ++ L + +     +AE+T +   K    D+++ R    T+++   TP  L
Sbjct: 86  AARFSLRLDRFASLLESVQERRQTAEVTAVL--KAADFDLNQLRQRFDTLVQRGMTPEML 143

Query: 132 K----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           +    V T  ++   ++ +F       S F    +    +++ +  +S   ++      E
Sbjct: 144 RHPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGE 203

Query: 188 LKKAFYEI-LEISNDED 203
             +    I L ++ND +
Sbjct: 204 NAENLVNILLSLANDTN 220


>gi|148259238|ref|YP_001233365.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|326402391|ref|YP_004282472.1| DNA helicase II [Acidiphilium multivorum AIU301]
 gi|146400919|gb|ABQ29446.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum
          JF-5]
 gi|325049252|dbj|BAJ79590.1| DNA helicase II [Acidiphilium multivorum AIU301]
          Length = 728

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
          S+ +D ++  + E + A D      V A AG+GKT +L  R   +LL   A P+ +L +T
Sbjct: 2  SDYLDRLNPAQREAVEAVDG--PVLVLAGAGTGKTRVLTTRFAHILLTRRAFPNQVLAVT 59

Query: 70 HTKAAAAEMSHRV 82
           T  AA EM  RV
Sbjct: 60 FTNKAAREMRERV 72


>gi|307700038|ref|ZP_07637087.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
 gi|307614799|gb|EFN94019.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
          Length = 1213

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
          T+ ++ +   P     V A AGSGKT  +  R++  ++  A  P ++L LT TK A AEM
Sbjct: 24 TEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAEM 83

Query: 79 SHR 81
            R
Sbjct: 84 GQR 86


>gi|303260559|ref|ZP_07346525.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293]
 gi|303262692|ref|ZP_07348631.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292]
 gi|303265228|ref|ZP_07351139.1| exonuclease RexA [Streptococcus pneumoniae BS397]
 gi|303266991|ref|ZP_07352865.1| exonuclease RexA [Streptococcus pneumoniae BS457]
 gi|303269649|ref|ZP_07355407.1| exonuclease RexA [Streptococcus pneumoniae BS458]
 gi|302636124|gb|EFL66620.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292]
 gi|302638272|gb|EFL68741.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293]
 gi|302640820|gb|EFL71209.1| exonuclease RexA [Streptococcus pneumoniae BS458]
 gi|302643471|gb|EFL73744.1| exonuclease RexA [Streptococcus pneumoniae BS457]
 gi|302645199|gb|EFL75435.1| exonuclease RexA [Streptococcus pneumoniae BS397]
          Length = 1216

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|304317509|ref|YP_003852654.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302779011|gb|ADL69570.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 716

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  L+      P+ +L +T T  AA EM  RV
Sbjct: 26 AGAGSGKTRVLTHRIAYLIKEKRVSPANILAITFTNKAAQEMKDRV 71


>gi|227509969|ref|ZP_03940018.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190575|gb|EEI70642.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 743

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 56/196 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++  N   P  +L +T T  AA EM  RV +++        
Sbjct: 27  IMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E+   + V T HA C  I+++   +    
Sbjct: 80  -------------------------------ESGDDVWVSTFHALCVRILRRNIDQLGFN 108

Query: 155 SHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNEEL-KKAFYEILEISND 201
             F IAD  + + L++               ++ L+SI    N+ L  KAF    +   D
Sbjct: 109 RAFTIADTSEQRTLVKRVLRELNIDPKKFDPRAVLSSISNAKNDLLTPKAF----KAQAD 164

Query: 202 EDIETLISDIISNRTA 217
            D + +++D+ +   A
Sbjct: 165 NDFDQIVADVYARYQA 180


>gi|46143262|ref|ZP_00135577.2| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207854|ref|YP_001053079.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           L20]
 gi|303252613|ref|ZP_07338776.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247370|ref|ZP_07529417.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|126096646|gb|ABN73474.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302648581|gb|EFL78774.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306856067|gb|EFM88223.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 1202

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88
           +A + A+AG+GKT  +    LRLLL     S     +L +T TKAA  E+  R+   I A
Sbjct: 14  TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73

Query: 89  WSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIM 144
                 E  + +   I     +   + +  +   L + I E    L  + TIH+FC+ ++
Sbjct: 74  CRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQKML 133

Query: 145 QQFPLEANI 153
            QF  ++ +
Sbjct: 134 FQFAFDSGM 142


>gi|322688621|ref|YP_004208355.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459957|dbj|BAJ70577.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
          Length = 1343

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|322690607|ref|YP_004220177.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455463|dbj|BAJ66085.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 1343

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|317482570|ref|ZP_07941585.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915992|gb|EFV37399.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1343

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|312133222|ref|YP_004000561.1| uvrd3 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772423|gb|ADQ01911.1| UvrD3 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1343

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|307244600|ref|ZP_07526704.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
          stomatis DSM 17678]
 gi|306491981|gb|EFM64030.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
          stomatis DSM 17678]
          Length = 787

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L+      P+ +L +T T  AA EM  RV  II
Sbjct: 25 AGAGSGKTKVLTTRIAYLVEDKQVMPANILAITFTNKAANEMRERVENII 74


>gi|294790511|ref|ZP_06755669.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304]
 gi|294458408|gb|EFG26761.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304]
          Length = 1578

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKTH + +R++ L+  +   P+ +L LT T+ AAAE+  RV + + A
Sbjct: 43 IVAGAGSGKTHAMTERIITLIKRDHIDPNRILGLTFTRKAAAELLSRVTKEVAA 96


>gi|291517284|emb|CBK70900.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
          helicase and exonuclease domains) [Bifidobacterium
          longum subsp. longum F8]
          Length = 1343

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|225856772|ref|YP_002738283.1| recombination helicase AddA [Streptococcus pneumoniae P1031]
 gi|225725942|gb|ACO21794.1| recombination helicase AddA [Streptococcus pneumoniae P1031]
          Length = 1216

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|227546375|ref|ZP_03976424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
          infantis ATCC 55813]
 gi|239622378|ref|ZP_04665409.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp.
          infantis CCUG 52486]
 gi|227213356|gb|EEI81228.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
          infantis ATCC 55813]
 gi|239514375|gb|EEQ54242.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp.
          infantis CCUG 52486]
          Length = 1343

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|213692896|ref|YP_002323482.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|213524357|gb|ACJ53104.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|320459071|dbj|BAJ69692.1| DNA helicase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 1343

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|157370002|ref|YP_001477991.1| DNA helicase IV [Serratia proteamaculans 568]
 gi|157321766|gb|ABV40863.1| UvrD/REP helicase [Serratia proteamaculans 568]
          Length = 684

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           YH+ FQ     I+      S+     +   S  V A AGSGKT +LV R   LL    A 
Sbjct: 185 YHDFFQ----NIETSPLNDSQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRQEAE 240

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +L L   + AA EM+ R+ E + +
Sbjct: 241 PGQILLLAFGRQAAEEMNERIQERLGS 267


>gi|23465762|ref|NP_696365.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705]
 gi|23326449|gb|AAN25001.1| widely conserved ATP-dependent DNA helicase; Rep-like protein
          [Bifidobacterium longum NCC2705]
          Length = 1343

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|46191135|ref|ZP_00206689.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium
          longum DJO10A]
 gi|189439817|ref|YP_001954898.1| superfamily I DNA and RNA helicase [Bifidobacterium longum
          DJO10A]
 gi|189428252|gb|ACD98400.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum
          DJO10A]
          Length = 1343

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|332040845|gb|EGI77217.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624]
          Length = 846

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 11  SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
           S  + L++   +EQ  A + P   A + A AGSGKT +L  R+  LL      P  LL +
Sbjct: 38  SSDMPLLAGLNTEQRAAVTLPAEPALILAGAGSGKTRVLTTRIAWLLQTGQISPGGLLAV 97

Query: 69  THTKAAAAEMSHRVLEII 86
           T T  AA EM  R+  ++
Sbjct: 98  TFTNKAAREMMTRLQSML 115


>gi|307249590|ref|ZP_07531577.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858445|gb|EFM90514.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 1202

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88
           +A + A+AG+GKT  +    LRLLL     S     +L +T TKAA  E+  R+   I A
Sbjct: 14  TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73

Query: 89  WSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIM 144
                 E  + +   I     +   + +  +   L + I E    L  + TIH+FC+ ++
Sbjct: 74  CRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQKML 133

Query: 145 QQFPLEANI 153
            QF  ++ +
Sbjct: 134 FQFAFDSGM 142


>gi|227875854|ref|ZP_03993980.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|306819135|ref|ZP_07452849.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239]
 gi|227843602|gb|EEJ53785.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|304648111|gb|EFM45422.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239]
          Length = 1213

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
          T+ ++ +   P     V A AGSGKT  +  R++  ++  A  P ++L LT TK A AEM
Sbjct: 24 TEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAEM 83

Query: 79 SHR 81
            R
Sbjct: 84 GQR 86


>gi|241205526|ref|YP_002976622.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859416|gb|ACS57083.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 826

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           S  V A AG+GKT +L  R+  +L    A PS +L +T T  AA EM  R+
Sbjct: 73  SVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 123


>gi|254286015|ref|ZP_04960976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226]
 gi|150423925|gb|EDN15865.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226]
          Length = 1208

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D S A  LL+          + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHSLAVSLLLNAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 138 CQRMLTQNAFESG 150


>gi|153809769|ref|ZP_01962437.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174]
 gi|149833947|gb|EDM89027.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174]
          Length = 744

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 41/158 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           D ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 6   DTLNDRQKEAVLHTDG--PLLILAGAGSGKTRVLTHRIAYLIAEKGVNPWNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV           D+I  +E                            G + V
Sbjct: 64  AAHEMRERV-----------DKIAGSE---------------------------GGSVWV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            T H+ C  I+++        ++F I D +  K LI+E
Sbjct: 86  STFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLIKE 123


>gi|15671986|ref|NP_266160.1| ATP-dependent exonuclease subunit a [Lactococcus lactis subsp.
           lactis Il1403]
 gi|81538647|sp|Q9CJI9|ADDA_LACLA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|12722839|gb|AAK04102.1|AE006239_4 subunit A of ATP-dependent exonuclease [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 1203

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWS 90
           ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+E+  R+  ++  A  
Sbjct: 19  KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRLERDLKKARQ 78

Query: 91  HLSDEILSAEIT 102
             SDE  +  +T
Sbjct: 79  ESSDENQACRLT 90


>gi|325120853|emb|CBZ56408.1| Helicase-like protein nhl, related [Neospora caninum Liverpool]
          Length = 991

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           V A  GSGKT  +  R++RLLL    P  +L LT TK  A E+  RVL+ +++
Sbjct: 432 VIAGPGSGKTTAITARIIRLLLEGEGP--ILALTFTKRGAEELRERVLDGLSS 482


>gi|307256414|ref|ZP_07538196.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865044|gb|EFM96945.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 1202

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88
           +A + A+AG+GKT  +    LRLLL     S     +L +T TKAA  E+  R+   I A
Sbjct: 14  TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGL-KVQTIH 137
                 E   AE      K  + +D     H          L + I E    L  + TIH
Sbjct: 74  CRRFLQEY-DAE------KSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIH 126

Query: 138 AFCEAIMQQFPLEANI 153
           +FC+ ++ QF  ++ +
Sbjct: 127 SFCQKMLFQFAFDSGM 142


>gi|291528122|emb|CBK93708.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 763

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 45/195 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D++++ + E +L ++      + A AGSGKT +L  R   L+     +P  ++ +T T 
Sbjct: 3   LDMLNEQQREAVLTTEG--PLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++   S                                        + 
Sbjct: 61  KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I++++       ++F I D +  K L+++  K     + +D     +K F
Sbjct: 83  VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICK----RLEIDTKMYKEKMF 138

Query: 193 YEILEISNDEDIETL 207
             ++  + DE I+ +
Sbjct: 139 LNVISSAKDEMIDPI 153


>gi|269977489|ref|ZP_06184461.1| UvrD/REP helicase [Mobiluncus mulieris 28-1]
 gi|269934405|gb|EEZ90967.1| UvrD/REP helicase [Mobiluncus mulieris 28-1]
          Length = 1213

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
          T+ ++ +   P     V A AGSGKT  +  R++  ++  A  P ++L LT TK A AEM
Sbjct: 24 TEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAEM 83

Query: 79 SHR 81
            R
Sbjct: 84 GQR 86


>gi|269792359|ref|YP_003317263.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099994|gb|ACZ18981.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 653

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          A AGSGKT +L +++  L+      PS +L +T T  AA EM  RV  ++    H
Sbjct: 32 AGAGSGKTRVLTRKIAYLISHKGVSPSKILAVTFTNKAAGEMRQRVERLLGGSLH 86


>gi|240081594|ref|ZP_04726137.1| UvrD [Neisseria gonorrhoeae FA19]
 gi|240124369|ref|ZP_04737325.1| UvrD [Neisseria gonorrhoeae PID332]
 gi|268597691|ref|ZP_06131858.1| DNA helicase II [Neisseria gonorrhoeae FA19]
 gi|268682996|ref|ZP_06149858.1| DNA helicase II [Neisseria gonorrhoeae PID332]
 gi|268551479|gb|EEZ46498.1| DNA helicase II [Neisseria gonorrhoeae FA19]
 gi|268623280|gb|EEZ55680.1| DNA helicase II [Neisseria gonorrhoeae PID332]
          Length = 735

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHR 81
           AA EM  R
Sbjct: 69 KAAKEMQTR 77


>gi|307152628|ref|YP_003888012.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822]
 gi|306982856|gb|ADN14737.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822]
          Length = 772

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+      P  +L +T T  AA EM  R+  +       +D
Sbjct: 28  VVAGAGSGKTRALTYRIAHLIRYHQVEPEHILAVTFTNKAAREMRERLERL------FAD 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILET-PGGLKVQTIHAFCEAIMQ------QF 147
           E+   +     G++ +     + + LL  +  T    L + T H+ C  I++      Q 
Sbjct: 82  ELAQEKY----GQRFSLLSEYEQKQLLSKVYRTVTKKLWIGTFHSLCSRILRYDINKYQD 137

Query: 148 PLEANITSHFAIADEEQSKKLIE 170
               +  S+F+I DE  ++ LI+
Sbjct: 138 ERGRSWKSNFSIVDESDAQSLIK 160


>gi|167631017|ref|YP_001681516.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium
           modesticaldum Ice1]
 gi|251764526|sp|B0TDI0|ADDA_HELMI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|167593757|gb|ABZ85505.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium
           modesticaldum Ice1]
          Length = 1396

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 22/121 (18%)

Query: 44  KTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           KT +LV+R++ ++        LL +T T AAAAEM  R+                  +TK
Sbjct: 53  KTAVLVERLIGIIKEGVDVDRLLVVTFTNAAAAEMRERI---------------RTALTK 97

Query: 104 IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
              + P+++ + +   LL           + T+H+FC  +++++    ++   F +ADE 
Sbjct: 98  ELARHPHQTWLRQQLVLL-------NRATITTLHSFCLDLVRKYYYRLDLDPAFRVADET 150

Query: 164 Q 164
           +
Sbjct: 151 E 151


>gi|49474442|ref|YP_032484.1| DNA helicase II [Bartonella quintana str. Toulouse]
 gi|49239946|emb|CAF26350.1| DNA helicase II [Bartonella quintana str. Toulouse]
          Length = 776

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L +  A P  +L +T T  AA EM  R+ E+I
Sbjct: 64  VLAGAGTGKTRVLTTRISHILRSGLASPKQILAVTFTNKAALEMKMRIGELI 115


>gi|296453651|ref|YP_003660794.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183082|gb|ADG99963.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 1340

 Score = 40.4 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  RV
Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70


>gi|239998017|ref|ZP_04717941.1| UvrD [Neisseria gonorrhoeae 35/02]
 gi|240113875|ref|ZP_04728365.1| UvrD [Neisseria gonorrhoeae MS11]
 gi|240116607|ref|ZP_04730669.1| UvrD [Neisseria gonorrhoeae PID18]
 gi|240124760|ref|ZP_04737646.1| UvrD [Neisseria gonorrhoeae SK-92-679]
 gi|268593866|ref|ZP_06128033.1| DNA helicase II [Neisseria gonorrhoeae 35/02]
 gi|268599941|ref|ZP_06134108.1| DNA helicase II [Neisseria gonorrhoeae MS11]
 gi|268602276|ref|ZP_06136443.1| DNA helicase II [Neisseria gonorrhoeae PID18]
 gi|268683334|ref|ZP_06150196.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679]
 gi|268547255|gb|EEZ42673.1| DNA helicase II [Neisseria gonorrhoeae 35/02]
 gi|268584072|gb|EEZ48748.1| DNA helicase II [Neisseria gonorrhoeae MS11]
 gi|268586407|gb|EEZ51083.1| DNA helicase II [Neisseria gonorrhoeae PID18]
 gi|268623618|gb|EEZ56018.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679]
          Length = 735

 Score = 40.4 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHR 81
           AA EM  R
Sbjct: 69 KAAKEMQTR 77


>gi|240015007|ref|ZP_04721920.1| UvrD [Neisseria gonorrhoeae DGI18]
 gi|240122076|ref|ZP_04735038.1| UvrD [Neisseria gonorrhoeae PID24-1]
 gi|254494631|ref|ZP_05107802.1| DNA helicase II [Neisseria gonorrhoeae 1291]
 gi|226513671|gb|EEH63016.1| DNA helicase II [Neisseria gonorrhoeae 1291]
          Length = 735

 Score = 40.4 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73 AAAAEMSHR 81
           AA EM  R
Sbjct: 69 KAAKEMQTR 77


>gi|261365067|ref|ZP_05977950.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996]
 gi|288566486|gb|EFC88046.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996]
          Length = 1213

 Score = 40.4 bits (93), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 28/146 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84
           + A+AG+GKT+ +     RL++    P  ++L +T TKAA AE+  R+          LE
Sbjct: 23  IEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLQALE 82

Query: 85  IITAWSHLSDEILSAEITKIQGK-------KPNKSDMSKARHLLITILETPGGLK---VQ 134
            +    +LSD++ +       G        K   +  S+AR L++ +    G      + 
Sbjct: 83  SVEDTDNLSDDLAAYCRDNHPGDVFITGLLKQALAQESRAR-LIVRLKAAIGQFDNAAIY 141

Query: 135 TIHAFCEAIMQQF------PLEANIT 154
           TIH FC+ I++ +      P++  +T
Sbjct: 142 TIHGFCQRILRDYAFLCRAPMDVELT 167


>gi|146342459|ref|YP_001207507.1| DNA helicase II [Bradyrhizobium sp. ORS278]
 gi|146195265|emb|CAL79290.1| DNA helicase II [Bradyrhizobium sp. ORS278]
          Length = 865

 Score = 40.4 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L +  A P  +L +T T  AA EM  R+ E++
Sbjct: 57  VLAGAGTGKTRVLTTRIAHILSMGRARPGEILSVTFTNKAAREMKTRLAEML 108


>gi|91069901|gb|ABE10830.1| UvrD/REP helicase [uncultured Prochlorococcus marinus clone
          ASNC2150]
          Length = 802

 Score = 40.4 bits (93), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+  N+  P  +L +T T  AA EM  R LE++ A
Sbjct: 29 VIAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81


>gi|86158934|ref|YP_465719.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775445|gb|ABC82282.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1192

 Score = 40.4 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 20/139 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           VSA AGSGKT  LV+  +RLL  +A      P  L  +T T+ AA E             
Sbjct: 23  VSAGAGSGKTTALVELCVRLLEGSALGSPCEPRELAAITFTEKAAQE------------- 69

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            L + +  A   + +  +    +  +AR  L   L     + V TIH FC  ++++   E
Sbjct: 70  -LEERLRGAVAARARAAREADPESPEARAWL-ERLHGLDAMAVGTIHGFCGRLLREHAPE 127

Query: 151 ANITSHFAIADEEQSKKLI 169
           A +    A+ +E+++   I
Sbjct: 128 AGLDPEAAVLEEDRASGWI 146


>gi|332042510|gb|EGI78712.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4]
          Length = 779

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+ EI+
Sbjct: 25 VIAGAGSGKTRVLTYRIAYLMNQGVDSFNILALTFTNKAAKEMKGRIAEIV 75


>gi|325989603|ref|YP_004249302.1| DNA helicase, UvrD type [Mycoplasma suis KI3806]
 gi|323574688|emb|CBZ40344.1| DNA helicase, UvrD type [Mycoplasma suis]
          Length = 744

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          +++  +  R+  + A  GSGKT ++++++ R  L+N   P  +L +T+T     E+  R+
Sbjct: 23 EIINFNENRNVGIIAGPGSGKTFVIIEKI-RFYLSNKIEPRKILLVTYTNRGIIEIKQRI 81

Query: 83 LEIITA 88
           + + A
Sbjct: 82 NKFVKA 87


>gi|315122506|ref|YP_004062995.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495908|gb|ADR52507.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 681

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 42/135 (31%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT +L+ R+L L+     P S +L +T T  A  EM +R+              
Sbjct: 54  AGAGTGKTTVLIARMLHLIYQKKIPASKILAMTFTNQAIQEMKNRL------------AC 101

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           LS  I +I                             QT H+F  +I++Q      + + 
Sbjct: 102 LSGHIPQI-----------------------------QTFHSFSASILRQHGNVVGLPTD 132

Query: 157 FAIADEEQSKKLIEE 171
           F I D   S+ +I+E
Sbjct: 133 FTILDSGDSRTIIKE 147


>gi|303247976|ref|ZP_07334243.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302490700|gb|EFL50603.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 1070

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           R   V A  G+GKTH L+ ++  LL   A P  +L +T T+ AA E+  R+
Sbjct: 488 RHLLVVAGPGTGKTHTLLAKIRALLDTGAPPGDILAVTFTRRAAGELRERL 538


>gi|289423398|ref|ZP_06425202.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
          653-L]
 gi|289156156|gb|EFD04817.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
          653-L]
          Length = 786

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+   N +PS +L +T T  AA EM  RV  II
Sbjct: 23 ILAGAGSGKTKVLTTRISYLVEDKNINPSNILAITFTNKAANEMRERVESII 74


>gi|269977462|ref|ZP_06184434.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|306819108|ref|ZP_07452822.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
 gi|269934378|gb|EEZ90940.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|304648084|gb|EFM45395.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
          Length = 900

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 81/226 (35%), Gaps = 62/226 (27%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + P  +  V A AGSGKT +L +R+  LL      P  +L +T T  AA EM  RV    
Sbjct: 67  THPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERV---- 122

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                   E L     K                           + V T H+ C  I++ 
Sbjct: 123 --------ETLVGNAAKY--------------------------MWVSTFHSSCVRILRA 148

Query: 147 FPLEANITSHFAIADEEQSKKLIEE------------AKKSTLASIMLDNNEELKKAFYE 194
                 IT  F+I D   +K L+                KS  A I    NE ++ A + 
Sbjct: 149 EAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNELVEPATFA 208

Query: 195 ILEISNDEDIETLISDIISNRTAL--KLIFFFFS-------YLWRR 231
             E++  + I  L ++I +    L  +   F F        YLWRR
Sbjct: 209 --EMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRR 252


>gi|219685727|ref|ZP_03540539.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii Far04]
 gi|219672722|gb|EED29749.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii Far04]
          Length = 1169

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA--WSHL 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT T  A  EM  R+L+ I +  +   
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTNKATEEMHTRILKAIESAYFGSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|182684115|ref|YP_001835862.1| exonuclease RexA [Streptococcus pneumoniae CGSP14]
 gi|303255773|ref|ZP_07341815.1| exonuclease RexA [Streptococcus pneumoniae BS455]
 gi|251764565|sp|B2IPX3|ADDA_STRPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|182629449|gb|ACB90397.1| exonuclease RexA [Streptococcus pneumoniae CGSP14]
 gi|301801979|emb|CBW34707.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae INV200]
 gi|302597285|gb|EFL64389.1| exonuclease RexA [Streptococcus pneumoniae BS455]
          Length = 1216

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|149013113|ref|ZP_01833959.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75]
 gi|147763058|gb|EDK70001.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75]
          Length = 1216

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|330445114|ref|ZP_08308766.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489305|dbj|GAA03263.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 1210

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 31/156 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +V   LRLLL + +             +L +T T+AA AE+  R+ + 
Sbjct: 23  IEASAGTGKTFTIVSLYLRLLLGHGNDDCAHIKPLDVDQILVVTFTEAATAELRDRIRKG 82

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKS----------DMSKARHLLITILETPGGLKVQT 135
           I       D  +S   ++ +   P K           D   A  +L           V T
Sbjct: 83  I------RDAYVS--FSRGESVGPFKDTISVLLNDIHDHKYAARVLKDAERRMDEASVYT 134

Query: 136 IHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169
           IH FC+ ++ Q   E+     + F + DE Q K L+
Sbjct: 135 IHGFCQRMLTQNAFESGCRFNNEF-VTDESQLKSLV 169


>gi|313887113|ref|ZP_07820809.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923342|gb|EFR34155.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 1123

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD 94
           A+AG+GKTH + +  LR +L     S   +  +T T  A  E+  R   E+ T  +   +
Sbjct: 13  ASAGAGKTHTMTEAFLRHVLEKPRSSYQEVQAVTFTNLATRELKERFFKELYTLATKPKE 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                   K        S  +KAR  L +IL   GGL+V+TI +F + I+    +E
Sbjct: 73  SPFYDSFNKEGYSDAQLS--TKARTALQSILFDYGGLRVKTIDSFFQDIIHALAIE 126


>gi|268590116|ref|ZP_06124337.1| helicase IV [Providencia rettgeri DSM 1131]
 gi|291314385|gb|EFE54838.1| helicase IV [Providencia rettgeri DSM 1131]
          Length = 683

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           YH+ FQ+  ET  L     S+ L   +   +  V A AGSGKT +LV R   L+L   A 
Sbjct: 185 YHDFFQQ-VETSPL---NYSQSLSVINGEDNVLVLAGAGSGKTSVLVARAGWLILRGLAK 240

Query: 62  PSTLLCLTHTKAAAAEMSHRV 82
           P  +L L   + AA EM+ R+
Sbjct: 241 PEQILLLAFGRKAADEMNGRI 261


>gi|238923773|ref|YP_002937289.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656]
 gi|238875448|gb|ACR75155.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656]
          Length = 763

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 45/195 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D++++ + E +L ++      + A AGSGKT +L  R   L+     +P  ++ +T T 
Sbjct: 3   LDMLNEQQREAVLTTEG--PLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++   S                                        + 
Sbjct: 61  KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I++++       ++F I D +  K L+++  K     + +D     +K F
Sbjct: 83  VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICK----RLEIDTKMYKEKMF 138

Query: 193 YEILEISNDEDIETL 207
             ++  + DE I+ +
Sbjct: 139 LNVISSAKDEMIDPI 153


>gi|283796111|ref|ZP_06345264.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
 gi|291076326|gb|EFE13690.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     +P  ++ +T T  AAAEM  RV +I+
Sbjct: 25 VLAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAAEMRERVDQIV 76


>gi|221194558|ref|ZP_03567615.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626]
 gi|221185462|gb|EEE17852.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626]
          Length = 843

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 49/152 (32%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  ++      P  +L +T T  AAAEM  R             
Sbjct: 39  VLAGAGSGKTRVLTYRIAHMIADEGVRPWQILAITFTNKAAAEMRER------------- 85

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK---VQTIHAFCEAIMQQFPLEA 151
                                     L T+L  PGG +   V T HA C  ++++     
Sbjct: 86  --------------------------LGTLL--PGGTRGMWVCTFHAMCVRMLREDSEAV 117

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
               +F I D++ SK+L+    K+ +A + +D
Sbjct: 118 GFGPNFTIYDDDDSKRLV----KAIMADLDID 145


>gi|325973160|ref|YP_004250224.1| DNA helicase II [Mycoplasma suis str. Illinois]
 gi|323651762|gb|ADX97844.1| DNA helicase II [Mycoplasma suis str. Illinois]
          Length = 744

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          +++  +  R+  + A  GSGKT ++++++ R  L+N   P  +L +T+T     E+  R+
Sbjct: 23 EIINFNENRNVGIIAGPGSGKTFVIIEKI-RFYLSNKIEPRKILLVTYTNRGIIEIKQRI 81

Query: 83 LEIITA 88
           + + A
Sbjct: 82 NKFVKA 87


>gi|302330242|gb|ADL20436.1| Putative helicase [Corynebacterium pseudotuberculosis 1002]
          Length = 1074

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           V A AG+GKT  +  RV+ L+  N A+P  +L LT T+ AA ++S R+   LE +     
Sbjct: 34  VVAGAGAGKTETMAARVVWLVANNIANPDRILGLTFTRKAAQQLSQRIRGRLEQLAGMDA 93

Query: 92  LSDEILSAEIT-KIQGKKPNKS 112
           L D   S E++ K++   P  S
Sbjct: 94  LRDIDPSGELSYKLEAIAPTVS 115


>gi|229829264|ref|ZP_04455333.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM
           14600]
 gi|229792427|gb|EEP28541.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM
           14600]
          Length = 753

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S+ +DL+++ + + +L ++      + A AGSGKT +L  R   L+      P  ++ +T
Sbjct: 2   SKILDLLNEQQRDGVLTTEG--PVLILAGAGSGKTRVLTHRAAYLIDEKGVAPYQIMAIT 59

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ ++++            E                             
Sbjct: 60  FTNKAAEEMRERINKLVS---------FGGE----------------------------- 81

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + V T H+ C  I+++F       S F I D +  K LI++  K
Sbjct: 82  AVWVATFHSSCVKILRRFADRVGYDSRFTIYDGDDQKSLIKDVCK 126


>gi|237749450|ref|ZP_04579930.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13]
 gi|229380812|gb|EEO30903.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13]
          Length = 685

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 37/137 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ +  + +  +  LT T  AAAEM  R+ +++T       
Sbjct: 24  VLAGAGSGKTRVITQKIAHLIDSGVYEAKNIAALTFTNKAAAEMQERISKLLT------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                        +P ++                  L + T H+    I++Q   E N+ 
Sbjct: 77  -------------EPKQASQ----------------LTISTFHSLGVKILRQEAAELNLK 107

Query: 155 SHFAIADEEQSKKLIEE 171
             F+I D +    L+++
Sbjct: 108 DRFSILDSDDCFSLVQD 124


>gi|225854627|ref|YP_002736139.1| recombination helicase AddA [Streptococcus pneumoniae JJA]
 gi|225723772|gb|ACO19625.1| recombination helicase AddA [Streptococcus pneumoniae JJA]
          Length = 1216

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|219684318|ref|ZP_03539262.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii PBr]
 gi|219672307|gb|EED29360.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii PBr]
          Length = 1169

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA--WSHL 92
          + A+AG+GKTHIL   V+ L+    +  + +L LT T  A  EM  R+L+ I +  +   
Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTNKATEEMHTRILKAIESAYFGSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|307704790|ref|ZP_07641686.1| recombination helicase AddA [Streptococcus mitis SK597]
 gi|307621699|gb|EFO00740.1| recombination helicase AddA [Streptococcus mitis SK597]
          Length = 1216

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 20/134 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+        
Sbjct: 45  VSASAGSGKTFVMAERILDQLTRGVEISQLFISTFTVKAATELKERLEKKIS-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  +IQ      SD+   +HL   + + P    + T+ +F +  + +     +I  
Sbjct: 97  ------QQIQ----ESSDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLIDIAP 145

Query: 156 HFAIADEEQSKKLI 169
           +F I  + QS++L+
Sbjct: 146 NFRIL-QNQSEQLL 158


>gi|303249732|ref|ZP_07335936.1| exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251919|ref|ZP_07533820.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651299|gb|EFL81451.1| exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860611|gb|EFM92623.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 1202

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88
           +A + A+AG+GKT  +    LRLLL     S     +L +T TKAA  E+  R+   I A
Sbjct: 14  TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGL-KVQTIH 137
                 E   AE      K  + +D     H          L + I E    L  + TIH
Sbjct: 74  CRRFLQEY-DAE------KSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIH 126

Query: 138 AFCEAIMQQFPLEANI 153
           +FC+ ++ QF  ++ +
Sbjct: 127 SFCQKMLFQFAFDSGM 142


>gi|189466065|ref|ZP_03014850.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM
           17393]
 gi|189434329|gb|EDV03314.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM
           17393]
          Length = 784

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 51/139 (36%), Gaps = 37/139 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+         + D+
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERIAR------QVGDQ 79

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +ARHL +            T H+    I+    +    TS
Sbjct: 80  --------------------RARHLWMG-----------TFHSIFLRILHVEAVNIGFTS 108

Query: 156 HFAIADEEQSKKLIEEAKK 174
            F I D   SK L+    K
Sbjct: 109 QFTIYDTADSKSLMRSIIK 127


>gi|216263506|ref|ZP_03435501.1| exodeoxyribonuclease V, beta subunit [Borrelia afzelii ACA-1]
 gi|215980350|gb|EEC21171.1| exodeoxyribonuclease V, beta subunit [Borrelia afzelii ACA-1]
          Length = 1170

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII--TAWSHL 92
          + A+AG+GKT+IL   V+ L+    +  + +L LT TK A  EM  R+L+ I    ++  
Sbjct: 16 IEASAGTGKTYILENLVINLMKTKLYSINEILVLTFTKKATEEMHARILKAIENAYFNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|332177512|gb|AEE13202.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707]
          Length = 1123

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD 94
           A+AG+GKTH + +  LR +L     S   +  +T T  A  E+  R   E+ T  +   +
Sbjct: 13  ASAGAGKTHTMTEAFLRHVLEKPRSSYQEVQAVTFTNLATRELKERFFKELYTLATKPQE 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                   K        S  +KAR  L +IL   GGL+V+TI +F + I+    +E
Sbjct: 73  SPFYDSFNKEGYSDAQLS--TKARTALQSILFDYGGLRVKTIDSFFQDIIHALAIE 126


>gi|308172547|ref|YP_003919252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307605411|emb|CBI41782.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328552312|gb|AEB22804.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens TA208]
 gi|328910656|gb|AEB62252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens LL3]
          Length = 739

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
          A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  I+      +DE
Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESILGPG---ADE 86

Query: 96 I 96
          I
Sbjct: 87 I 87


>gi|237752434|ref|ZP_04582914.1| ATP-dependent helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375923|gb|EEO26014.1| ATP-dependent helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 679

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          P+    V A+AG+GKT  +V R+  LL     P+ +L LT T  AA+EM  R+
Sbjct: 17 PSGHNLVIASAGTGKTSTIVGRISFLLQNGILPNEILLLTFTNKAASEMLSRL 69


>gi|221194693|ref|ZP_03567750.1| UvrD/REP helicase [Atopobium rimae ATCC 49626]
 gi|221185597|gb|EEE17987.1| UvrD/REP helicase [Atopobium rimae ATCC 49626]
          Length = 1169

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 42/197 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPSTL- 65
           T+D  S T  ++       +  +V+A AGSGKT  L +RV+  L         A+  +L 
Sbjct: 2   TLDFHSYTPGQKQAIQTLDKPLFVAAGAGSGKTFTLTKRVVWALSKGSGTDGGAYLDSLD 61

Query: 66  --LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
             L +T T  AA E+  RV   +     L D+ L+ +   I                   
Sbjct: 62  QALIITFTNEAAKEIKERVRSALEE-EGLFDQALNVDSAWI------------------- 101

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                      TIH+ C  I++    +  I   F + DE +  +L++E+ +  L+S  L 
Sbjct: 102 ----------STIHSMCARILRSHAFDLGIDPDFIVLDEHRRNELLQESLEEVLSS--LR 149

Query: 184 NNEELKKAFYEILEISN 200
             +E  K F+ + ++ +
Sbjct: 150 ETDEY-KGFFSVFDLKD 165


>gi|126728040|ref|ZP_01743856.1| hypothetical protein SSE37_18657 [Sagittula stellata E-37]
 gi|126711005|gb|EBA10055.1| hypothetical protein SSE37_18657 [Sagittula stellata E-37]
          Length = 729

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 36/60 (60%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++++A  P   A V A  G+GKT  + +R+ RLL +  +PS +  + +++ A AE+  RV
Sbjct: 191 DRVVALPPDARAVVVAGPGAGKTFTIQRRICRLLESGLNPSAISVIAYSRTAVAELLARV 250


>gi|55981396|ref|YP_144693.1| UvrD protein [Thermus thermophilus HB8]
 gi|55772809|dbj|BAD71250.1| UvrD protein [Thermus thermophilus HB8]
          Length = 692

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           A V A AGSGKT  +V RV  L+      PS +L +T T  AA EM  R+  ++  
Sbjct: 23 PALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNKAAEEMRERLRGLVPG 79


>gi|296130310|ref|YP_003637560.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022125|gb|ADG75361.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 1162

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
          T  ++ +   P R + V A AGSGKT  +  RV+  L+AN    P  +L LT T+ AA E
Sbjct: 27 TDEQRAVIEAPLRPSLVVAGAGSGKTETMAARVV-WLVANGLVAPDQVLGLTFTRKAAGE 85

Query: 78 MS 79
          +S
Sbjct: 86 LS 87


>gi|17986879|ref|NP_539513.1| DNA helicase II [Brucella melitensis bv. 1 str. 16M]
 gi|17982519|gb|AAL51777.1| DNA helicase ii [Brucella melitensis bv. 1 str. 16M]
          Length = 827

 Score = 40.4 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM  R+  ++
Sbjct: 34 VLAGAGTGKTRVLTTRIAHILSTGLAYPSQILAVTFTNKAAREMKERIGHLV 85


>gi|2618592|dbj|BAA23380.1| UvrD [Thermus thermophilus]
          Length = 692

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           A V A AGSGKT  +V RV  L+      PS +L +T T  AA EM  R+  ++  
Sbjct: 23 PALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNKAAEEMRERLRGLVPG 79


>gi|310819562|ref|YP_003951920.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392634|gb|ADO70093.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 781

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          V + AGSGKT ++ +RV  L+ +    P  +L +T T  AA EM  R+++++ A +H
Sbjct: 36 VLSGAGSGKTRVITRRVAHLVKVRRVFPWRILAVTFTNKAAREMRERLVQLLGAQAH 92


>gi|154685156|ref|YP_001420317.1| PcrA [Bacillus amyloliquefaciens FZB42]
 gi|154351007|gb|ABS73086.1| PcrA [Bacillus amyloliquefaciens FZB42]
          Length = 739

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
          A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  I+      +DE
Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESILGPG---ADE 86

Query: 96 I 96
          I
Sbjct: 87 I 87


>gi|124025096|ref|YP_001014212.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
 gi|123960164|gb|ABM74947.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 28/189 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+      PS++L +T T  AA EM  R LE+         
Sbjct: 29  VVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNKAAREMKDR-LEL--------- 78

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+  ++ +   KP     +++ R +   I  E    L + T HA    +++      +
Sbjct: 79  -LLAKRLSSLTHGKPWTALQVAEQREIRNRIHREISRELWIGTFHALFSRLLRFDIDKFK 137

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIE 205
            P     T  F+I DE  ++ LI+E        + LD    E KK  + I    N    +
Sbjct: 138 DPEGLTWTKQFSIYDETDAQSLIKEI---VTQDLQLDPKRFEPKKVRWAISNAKN----Q 190

Query: 206 TLISDIISN 214
            L+ D +SN
Sbjct: 191 CLLPDDLSN 199


>gi|111115465|ref|YP_710083.1| exodeoxyribonuclease V, beta chain [Borrelia afzelii PKo]
 gi|110890739|gb|ABH01907.1| exodeoxyribonuclease V, beta chain [Borrelia afzelii PKo]
          Length = 1170

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII--TAWSHL 92
          + A+AG+GKT+IL   V+ L+    +  + +L LT TK A  EM  R+L+ I    ++  
Sbjct: 16 IEASAGTGKTYILENLVINLMKTKLYSINEILVLTFTKKATEEMHARILKAIENAYFNSK 75

Query: 93 SDEIL 97
          ++EIL
Sbjct: 76 TNEIL 80


>gi|72383505|ref|YP_292860.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str.
           NATL2A]
 gi|72003355|gb|AAZ59157.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus
           str. NATL2A]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 28/189 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+      PS++L +T T  AA EM  R LE+         
Sbjct: 29  VVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNKAAREMKDR-LEL--------- 78

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+  ++ +   KP     +++ R +   I  E    L + T HA    +++      +
Sbjct: 79  -LLAKRLSSLTHGKPWTALQVAEQREIRNRIHREISRELWIGTFHALFSRLLRFDIDKFK 137

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIE 205
            P     T  F+I DE  ++ LI+E        + LD    E KK  + I    N    +
Sbjct: 138 DPEGLTWTKQFSIYDETDAQSLIKEI---VTQDLQLDPKRFEPKKVRWAISNAKN----Q 190

Query: 206 TLISDIISN 214
            L+ D +SN
Sbjct: 191 CLLPDDLSN 199


>gi|46199364|ref|YP_005031.1| DNA helicase uvrD [Thermus thermophilus HB27]
 gi|46196989|gb|AAS81404.1| DNA helicase uvrD [Thermus thermophilus HB27]
          Length = 692

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           A V A AGSGKT  +V RV  L+      PS +L +T T  AA EM  R+  ++  
Sbjct: 23 PALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNKAAEEMRERLRGLVPG 79


>gi|326804259|ref|YP_004322077.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326650562|gb|AEA00745.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 818

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  LL   A  P  +L +T T  AA EM  RV  ++
Sbjct: 28 IMAGAGSGKTRVLTHRMAYLLEEKAVRPWNILAITFTNKAANEMKERVKNLV 79


>gi|302205690|gb|ADL10032.1| Putative UvrD-helicase [Corynebacterium pseudotuberculosis C231]
 gi|308275925|gb|ADO25824.1| Putative helicase [Corynebacterium pseudotuberculosis I19]
          Length = 1074

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           V A AG+GKT  +  RV+ L+  N A+P  +L LT T+ AA ++S R+   LE +     
Sbjct: 34  VVAGAGAGKTETMAARVVWLVANNIANPDRILGLTFTRKAAQQLSQRIRGRLEQLAGMDA 93

Query: 92  LSDEILSAEIT-KIQGKKPNKS 112
           L D   S E++ K++   P  S
Sbjct: 94  LRDIDPSGELSYKLEAIAPTVS 115


>gi|300857961|ref|YP_003782944.1| hypothetical protein cpfrc_00543 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685415|gb|ADK28337.1| hypothetical protein cpfrc_00543 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 1074

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           V A AG+GKT  +  RV+ L+  N A+P  +L LT T+ AA ++S R+   LE +     
Sbjct: 34  VVAGAGAGKTETMAARVVWLVANNIANPDRILGLTFTRKAAQQLSQRIRGRLEQLAGMDA 93

Query: 92  LSDEILSAEIT-KIQGKKPNKS 112
           L D   S E++ K++   P  S
Sbjct: 94  LRDIDPSGELSYKLEAIAPTVS 115


>gi|19552005|ref|NP_600007.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389668|ref|YP_225070.1| DNA helicase RECQ [Corynebacterium glutamicum ATCC 13032]
 gi|21323545|dbj|BAB98172.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
          ATCC 13032]
 gi|41325003|emb|CAF19484.1| PUTATIVE DNA HELICASE RECQ [Corynebacterium glutamicum ATCC
          13032]
          Length = 678

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          I+L    + +++ AS P     + A AG+GKT  +  R+  L+      P+ +L +T T 
Sbjct: 2  INLQDLDEDQRIAASAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTS 61

Query: 73 AAAAEMSHRV 82
           AA EM HR+
Sbjct: 62 RAAGEMRHRL 71


>gi|325838896|ref|ZP_08166702.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1]
 gi|325490637|gb|EGC92948.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1]
          Length = 741

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV ++I
Sbjct: 25 VMAGAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKAAREMKERVEKLI 76


>gi|307245198|ref|ZP_07527289.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254145|ref|ZP_07535990.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306853842|gb|EFM86056.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862845|gb|EFM94794.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
          Length = 1202

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88
           +A + A+AG+GKT  +    LRLLL     S     +L +T TKAA  E+  R+   I A
Sbjct: 14  TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGL-KVQTIH 137
                 E   AE      K  + +D     H          L + I E    L  + TIH
Sbjct: 74  CRRFLQEY-DAE------KSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIH 126

Query: 138 AFCEAIMQQFPLEANI 153
           +FC+ ++ QF  ++ +
Sbjct: 127 SFCQKMLFQFAFDSGM 142


>gi|301794254|emb|CBW36675.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae INV104]
          Length = 1216

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|253996605|ref|YP_003048669.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253983284|gb|ACT48142.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 672

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT ++ Q++  L+  A   P  +  +T T  AA EM  RV ++         
Sbjct: 22  VLAGAGSGKTRVITQKISYLINEAGYAPKEIAAITFTNKAALEMQERVGKLMQGTNIKGL 81

Query: 86  -ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILET 127
            I  +  L  ++L AE T + G KP  S  D S +  +L  +L T
Sbjct: 82  TIATFHSLGLQMLRAEAT-LLGYKPQFSILDSSDSFKILADVLAT 125


>gi|255531341|ref|YP_003091713.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366]
 gi|255344325|gb|ACU03651.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366]
          Length = 769

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +D ++    +Q  A + T+  A + A AGSGKT ++  RV  L+        +L LT T 
Sbjct: 1  MDYLAGLNPQQRAAVENTQGPAMIVAGAGSGKTRVITYRVAHLIEKGVDAFNILVLTFTN 60

Query: 73 AAAAEMSHRVLEII 86
           A+ +M  R++++I
Sbjct: 61 KASKDMRERIMKVI 74


>gi|269955531|ref|YP_003325320.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304212|gb|ACZ29762.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM
           15894]
          Length = 896

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L  R+  LL    A    +L +T T  AAAEM  RV  ++
Sbjct: 97  IVAGAGSGKTRVLTHRIAYLLATGRARAGEILAITFTNKAAAEMRERVEHLV 148


>gi|168486450|ref|ZP_02710958.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00]
 gi|183570541|gb|EDT91069.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00]
          Length = 1216

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|145294942|ref|YP_001137763.1| hypothetical protein cgR_0888 [Corynebacterium glutamicum R]
 gi|140844862|dbj|BAF53861.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 678

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          I+L    + +++ AS P     + A AG+GKT  +  R+  L+      P+ +L +T T 
Sbjct: 2  INLQDLDEDQRIAASAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTS 61

Query: 73 AAAAEMSHRV 82
           AA EM HR+
Sbjct: 62 RAAGEMRHRL 71


>gi|134299275|ref|YP_001112771.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1]
 gi|251764523|sp|A4J4E3|ADDA_DESRM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|134051975|gb|ABO49946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Desulfotomaculum
           reducens MI-1]
          Length = 1244

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 25/128 (19%)

Query: 44  KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           KT +LV+R++ L+     P     LL +T T AAAAEM  R+                  
Sbjct: 31  KTAVLVERIIGLITDPHRPVDVDQLLIVTFTNAAAAEMRERI---------------GQA 75

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           ++K   + P+   +++     +T+L       + T+H+FC  +++++  + ++   F +A
Sbjct: 76  LSKALQENPHSKRLARQ----LTMLNRA---SITTLHSFCLDLLRRYFYQLDLDPGFRVA 128

Query: 161 DEEQSKKL 168
           DE +++ L
Sbjct: 129 DEVEAELL 136


>gi|315655665|ref|ZP_07908563.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333]
 gi|315489729|gb|EFU79356.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333]
          Length = 877

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L +R+  LL      P  +L +T T  AAAEM  RV  ++
Sbjct: 82  VMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLV 133


>gi|258620942|ref|ZP_05715976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573]
 gi|258586330|gb|EEW11045.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573]
          Length = 1208

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D S A  LL+          + TIH F
Sbjct: 85  LHDARLAFARGASEDPLLRSLLAEF-------TDHSLAVSLLLNAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 138 CQRMLTQNAFESG 150


>gi|225858940|ref|YP_002740450.1| recombination helicase AddA [Streptococcus pneumoniae 70585]
 gi|225720195|gb|ACO16049.1| recombination helicase AddA [Streptococcus pneumoniae 70585]
          Length = 1216

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|254458617|ref|ZP_05072042.1| ATP-dependent DNA helicase, RecQ family, putative [Campylobacterales
            bacterium GD 1]
 gi|207084925|gb|EDZ62212.1| ATP-dependent DNA helicase, RecQ family, putative [Campylobacterales
            bacterium GD 1]
          Length = 1596

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 23   EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
            ++++  + ++   + A  GSGKT +LV ++  L+L  N      L LT+++ A  E   R
Sbjct: 1045 KKVIDDNESQGMMILAGPGSGKTKVLVHKIASLILQENIKADQFLMLTYSRTAMLEFKSR 1104

Query: 82   VLEIITAWSH 91
            + E+I   ++
Sbjct: 1105 LFELIGQLAY 1114


>gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++
Sbjct: 27 VLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVV 77


>gi|269960508|ref|ZP_06174880.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834585|gb|EEZ88672.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1212

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGTTDTKHHVPLTVDQILVVTFTEAATAELRDRIRAR 82

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A     D ++   + +++       D  +A  +L+          V TIH F
Sbjct: 83  IHDARIAFARGQSLDPVIQPLLEEVE-------DHKQAAEILLQAERQMDEAAVYTIHGF 135

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 136 CQRMLTQNAFESG 148


>gi|260776643|ref|ZP_05885538.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607866|gb|EEX34131.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1206

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-------HPST---LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +         P T   +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGCAESKHQQPLTVDQILVVTFTEAATAELRDRIRAR 82

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  +     D ++   +  I        D S+A  +L+          V TIH F
Sbjct: 83  IHDARLAFSRGQSGDPVIQPLLEAI-------DDHSQAAEILLQAERQMDEAAVYTIHGF 135

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 136 CQRMLTQNAFESG 148


>gi|227504218|ref|ZP_03934267.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227199173|gb|EEI79221.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 869

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 29/191 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L +R+  L+      P  +L +T T  AAAEM  RV ++         
Sbjct: 95  IVAGAGSGKTAVLTRRIAYLMRNRGVAPWEILAITFTNKAAAEMKERVGQLVGPVAERMW 154

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           ++ +  +   IL      + G   N +  D   AR LL  I +    +++         +
Sbjct: 155 VSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLTMIAKD---MQLDLKKYTARVL 211

Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
             Q     N  ++  +A+A+ E++K   +     T+A +  +    L+ A        N 
Sbjct: 212 ANQISNHKNELVSPDYALAEAEKTKNPFD----ITVARVFDEYQRRLRAA--------NS 259

Query: 202 EDIETLISDII 212
            D + LI +++
Sbjct: 260 VDFDDLIGEVV 270


>gi|222149095|ref|YP_002550052.1| DNA helicase II [Agrobacterium vitis S4]
 gi|221736080|gb|ACM37043.1| DNA helicase II [Agrobacterium vitis S4]
          Length = 858

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A PS +L +T T  AA EM  RV
Sbjct: 99  VLAGAGTGKTRVLTTRIAHILATGRAFPSQILSVTFTNKAAREMKERV 146


>gi|222111848|ref|YP_002554112.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221731292|gb|ACM34112.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 826

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+     EQL A + P   A + A AGSGKT +L  R+  LL    A P  +L +T T  
Sbjct: 43  LLQNLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGLATPGGILAVTFTNK 102

Query: 74  AAAEMSHRV 82
           AA EM  R+
Sbjct: 103 AAKEMLTRL 111


>gi|148985758|ref|ZP_01818886.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71]
 gi|147922062|gb|EDK73185.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71]
 gi|301800092|emb|CBW32693.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae OXC141]
          Length = 1216

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|121610666|ref|YP_998473.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121555306|gb|ABM59455.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 1142

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 26  LASDPTRSA---------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           L  DPT++           + A  G+GKT  LV+R+  LL     P+T+L LT +  AA 
Sbjct: 199 LTPDPTQAQAAAHRGLAFQLQAGPGTGKTRTLVRRIEGLLADGVDPTTILVLTFSNKAAN 258

Query: 77  EMSHRV 82
           E+  R+
Sbjct: 259 ELCERI 264


>gi|293376176|ref|ZP_06622421.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909]
 gi|292645163|gb|EFF63228.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909]
          Length = 741

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV ++I
Sbjct: 25 VMAGAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKAAREMKERVEKLI 76


>gi|146417360|ref|XP_001484649.1| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 37/138 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A  G+GKT +LV RV  LLL +   P  ++  T TK AA EM  R+  ++        
Sbjct: 30  VIAGPGTGKTKVLVSRVAHLLLHDQIPPQQIIVTTFTKKAANEMVLRLRLVL-------- 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                            +D+   R            L V T H+ C  I++++     + 
Sbjct: 82  ---------------QDTDIDVNR------------LMVGTFHSICYRIIKKYGHLIGLE 114

Query: 155 SHFAIADEEQSKKLIEEA 172
             F IADE+ S  L+EE 
Sbjct: 115 G-FTIADEKDSIHLLEEC 131


>gi|190149661|ref|YP_001968186.1| exodeoxyribonuclease V subunit beta [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307260844|ref|ZP_07542530.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307262969|ref|ZP_07544591.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914792|gb|ACE61044.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306869411|gb|EFN01202.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306871595|gb|EFN03317.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 1202

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88
           +A + A+AG+GKT  +    LRLLL     S     +L +T TKAA  E+  R+   I A
Sbjct: 14  TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGL-KVQTIH 137
                 E   AE      K  + +D     H          L + I E    L  + TIH
Sbjct: 74  CRRFLQEY-DAE------KSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIH 126

Query: 138 AFCEAIMQQFPLEANI 153
           +FC+ ++ QF  ++ +
Sbjct: 127 SFCQKMLFQFAFDSGM 142


>gi|312863341|ref|ZP_07723579.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396]
 gi|311100877|gb|EFQ59082.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396]
          Length = 1217

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 19/124 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L ++        L   T T  AA E+  R+           ++
Sbjct: 45  VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERL-----------EK 93

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L+ ++ +++          + R  L   +   G   + T+ AF + ++ Q+     ++ 
Sbjct: 94  RLTEQLGQVE--------TDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145

Query: 156 HFAI 159
            F I
Sbjct: 146 IFRI 149


>gi|294668891|ref|ZP_06733981.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309188|gb|EFE50431.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 1189

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 33/169 (19%)

Query: 22  SEQLLASDPTR-----SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           S  +L  DP       +A + A+AG+GKT+ +     RL+L    P   +L +T TKAA 
Sbjct: 2   SRSILPFDPLTVPVQGTALIEASAGTGKTYGIAALFARLILLEKLPVDKVLVVTFTKAAT 61

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKV 133
           AE+  R+              L     +I+G K ++      R LL      ETP  L++
Sbjct: 62  AELKTRL-----------RGRLDEAFRRIRGDKMDEEADGFMRGLLEQAARQETPERLEL 110

Query: 134 Q--------------TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           +              TIH FC+ ++  +     +    + AD+   ++L
Sbjct: 111 RLKAALSQFDNAAIYTIHGFCQRLLGDYAFLCQVPFETSSADDNDKREL 159


>gi|261884575|ref|ZP_06008614.1| putative recombination protein RecB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 135

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 23/137 (16%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +R   + A+A SG T  L  R + L+L     + +L LT TK AA EM  R   II A+ 
Sbjct: 4   SRYLALEASAASGITFALSVRFIALILQGNDIAEILALTFTKKAANEMKSR---IIDAFC 60

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHL----LITILETPGG------LKVQTIHAFC 140
           +L +            KK   +++ K   L    ++++ +   G      LK+ T  +F 
Sbjct: 61  NLHE----------SSKKNELNELEKILELSAVDILSLRDKYMGNFLKNELKISTFDSFF 110

Query: 141 EAIMQQFPLEANITSHF 157
             I++QF L   I   F
Sbjct: 111 TMILRQFSLNLGIMPDF 127


>gi|226310272|ref|YP_002770166.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226093220|dbj|BAH41662.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
          Length = 782

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L QR+  L+ A    P ++L +T T  AA EM +RV
Sbjct: 28 ILAGAGSGKTKVLTQRIAYLISAKQVAPWSILAITFTNKAAREMQNRV 75


>gi|283798327|ref|ZP_06347480.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
 gi|291073910|gb|EFE11274.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
          Length = 618

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81
          V A  GSGKT ++  RV  L+  +  +PS++L +T T+AAA EM  R
Sbjct: 20 VLAGPGSGKTTVVTHRVQSLIERHGVNPSSILVITFTRAAAREMKER 66


>gi|171779650|ref|ZP_02920606.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281752|gb|EDT47186.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1208

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 22/148 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R++  +L       L   T T  AA E+  R+ + I+        
Sbjct: 45  VSASAGSGKTFVMVERIIDKILRGITVDRLFISTFTVKAAGELKERLEKKISQAL----- 99

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                      +K   +D+    +  +  L+T     + T+ AF + ++ Q+     I+ 
Sbjct: 100 -----------QKATDNDLKTYLNEQLLALQTA---DIGTMDAFTQKLVNQYGYTLGISP 145

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLD 183
            F I  ++  + L+   K    A +  D
Sbjct: 146 TFRIMTDKSEQDLV---KNDVFADLFAD 170


>gi|330429421|gb|AEC20755.1| DNA helicase [Pusillimonas sp. T7-7]
          Length = 639

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
          A  GSGKT +L  R+ RLL+ +      +L LT T  AA EM  R+++I+
Sbjct: 34 AGPGSGKTRVLTARIARLLVESLDDRWRILALTFTNRAADEMRSRIIDIV 83


>gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 896

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++
Sbjct: 27 VLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVV 77


>gi|307693333|ref|ZP_07635570.1| UvrD/REP family ATP-dependent DNA helicase [Ruminococcaceae
          bacterium D16]
          Length = 699

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          A  GSGKT +LV R+  L+     P  +L +T+T +AA +MS R
Sbjct: 33 AVPGSGKTTVLVSRIGYLIAQGVSPENILTMTYTVSAARDMSRR 76


>gi|295116233|emb|CBL37080.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
          SM4/1]
          Length = 618

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81
          V A  GSGKT ++  RV  L+  +  +PS++L +T T+AAA EM  R
Sbjct: 20 VLAGPGSGKTTVVTHRVQSLIERHGVNPSSILVITFTRAAAREMKER 66


>gi|121595626|ref|YP_987522.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42]
 gi|120607706|gb|ABM43446.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42]
          Length = 816

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+     EQL A + P   A + A AGSGKT +L  R+  LL    A P  +L +T T  
Sbjct: 33  LLQNLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGLATPGGILAVTFTNK 92

Query: 74  AAAEMSHRV 82
           AA EM  R+
Sbjct: 93  AAKEMLTRL 101


>gi|189425128|ref|YP_001952305.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189421387|gb|ACD95785.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 665

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74
          +SQ   EQ +A   T     V A AGSGKT ++  R++ LL     P+  +L +T T  A
Sbjct: 1  MSQLNPEQFIAVHHTEGPLLVLAGAGSGKTQVITSRIVHLLGTLKVPADQILAVTFTNKA 60

Query: 75 AAEMSHRV 82
          A EM  RV
Sbjct: 61 AKEMQERV 68


>gi|304413632|ref|ZP_07395076.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
           insecticola LSR1]
 gi|304283723|gb|EFL92117.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
           insecticola LSR1]
          Length = 715

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 40/141 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGK+ +LV R+  LL   +  P +++ +T T  +AAEM HR+  +         
Sbjct: 25  VLAGAGSGKSRVLVHRIAWLLSQEDISPFSIIAVTFTNKSAAEMRHRIENL--------- 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G+  N                   G+ V T H     +++   L AN+ 
Sbjct: 76  -----------GRAHN-------------------GMWVGTFHGLAHRLLRIHHLAANLP 105

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
             F + D +   + ++   KS
Sbjct: 106 QDFQVLDSDDQLRFVKRIIKS 126


>gi|294786844|ref|ZP_06752098.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305]
 gi|315226480|ref|ZP_07868268.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM
           10105]
 gi|294485677|gb|EFG33311.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305]
 gi|315120612|gb|EFT83744.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM
           10105]
          Length = 901

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A AGSGKT +L +R+   L   +A+PS +L +T T  AA EM  R+  +I
Sbjct: 71  IGAGAGSGKTRVLTRRIAWALSQWHAYPSQILAITFTNKAAREMKERLGSLI 122


>gi|258652355|ref|YP_003201511.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555580|gb|ACV78522.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 1106

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          +  + L + T  +  +   P     V A AGSGKT  +  RV+ L+      P  +L LT
Sbjct: 8  ARELGLPAPTAEQAAVIEAPLEPGLVVAGAGSGKTETMAARVVYLIATGQVRPEQVLGLT 67

Query: 70 HTKAAAAEMSHRV 82
           T+ AAA ++ R+
Sbjct: 68 FTRKAAAALAQRI 80


>gi|115372354|ref|ZP_01459663.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|115370567|gb|EAU69493.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 774

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          V + AGSGKT ++ +RV  L+ +    P  +L +T T  AA EM  R+++++ A +H
Sbjct: 29 VLSGAGSGKTRVITRRVAHLVKVRRVFPWRILAVTFTNKAAREMRERLVQLLGAQAH 85


>gi|93569010|gb|ABF13475.1| helicase [Arcanobacterium pyogenes]
          Length = 868

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  R+  L+ + +  PS +L +T T  AA EM  R+  +I
Sbjct: 85  VVAGAGSGKTRVLTTRIYHLISSGSVRPSEILAITFTNKAAKEMRERLESMI 136


>gi|116490506|ref|YP_810050.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1]
 gi|290889906|ref|ZP_06552993.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429]
 gi|116091231|gb|ABJ56385.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1]
 gi|290480516|gb|EFD89153.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429]
          Length = 748

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L  RV  L+   +  P ++L +T T  AA EM  R+  +         
Sbjct: 25  IMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAITFTNKAAREMKERIAGLVDEEDARSI 84

Query: 86  -ITAWSHLSDEILSAEITKI 104
            ++ +  LS  IL  ++ KI
Sbjct: 85  WVSTFHALSARILRRDVDKI 104


>gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505]
 gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505]
          Length = 1142

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66
          Q  +E + + + T+ +  + +       V A AGSGKT  + QRV+ L+      P  +L
Sbjct: 12 QALAEALGIHTPTQEQARVIAHRLSPLLVVAGAGSGKTATMAQRVVYLVATGQVRPDQIL 71

Query: 67 CLTHTKAAAAEMSHRV 82
           LT T+ A AE+  RV
Sbjct: 72 GLTFTRKATAELDQRV 87


>gi|227498671|ref|ZP_03928815.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21]
 gi|226904127|gb|EEH90045.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21]
          Length = 750

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 15 DLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          DL+S   ++Q  A         + A AGSGKT  L  R+  LL     P ++L +T T  
Sbjct: 3  DLLSSLNTQQAEAVKHVAGPILILAGAGSGKTKALTTRIAYLLEKGVPPYSILAITFTNK 62

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 63 AAKEMRERVDKLV 75


>gi|254369409|ref|ZP_04985421.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122359|gb|EDO66499.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 671

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 38/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV            
Sbjct: 22  VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV------------ 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                           KS + K         E   GL + T H+F  +I+++   E    
Sbjct: 70  ----------------KSRLDK---------EKSKGLMISTFHSFGLSILKKHFNELGYK 104

Query: 155 SHFAIADEEQSKKLI 169
            +F + D   S  LI
Sbjct: 105 KNFTLFDSHDSLALI 119


>gi|15602381|ref|NP_245453.1| hypothetical protein PM0516 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720777|gb|AAK02600.1| RecB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1230

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 28/160 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-----ANAHPST---LLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     + + P T   +L +T T+AA  E+  R+ E I 
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLQAGENSFSQPLTVEQILVVTFTEAATEELKGRIRERI- 78

Query: 88  AWSHLSDEILSAEITKIQGKKPNK------------SDMSKARHLLITILETPGGLKVQT 135
              H + + L A   + QG++  +            SD+  A   L    +T     + T
Sbjct: 79  ---HQAKKALIA--YQEQGEQALQDDPFLLACLASISDLDLAIQRLTIAEQTMDLAAIYT 133

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           IH FC  ++ Q+   + +  HF +   +    L+E   K+
Sbjct: 134 IHGFCRRMLMQYAFHSRV--HFNLTLNKDETALLERLFKA 171


>gi|317491508|ref|ZP_07949944.1| UvrD/REP helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921055|gb|EFV42378.1| UvrD/REP helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 684

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LLL   A P  +L L   + AA EM+ R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLLRKEATPEQILLLAFGRKAAEEMNDRIQE 263


>gi|153836760|ref|ZP_01989427.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149749906|gb|EDM60651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 1227

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 38  IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A     D ++   + +         D  +A  +L+          V TIH F
Sbjct: 98  IHDARIAFARGQSYDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 151 CQRMLTQNAFESG 163


>gi|56476966|ref|YP_158555.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1]
 gi|56313009|emb|CAI07654.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1]
          Length = 1229

 Score = 40.4 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93
           + A+AG+GKT  +    LRLL+        +L +T T+AA AE+  RV E I    ++L 
Sbjct: 27  IEASAGTGKTWNICGLFLRLLVERELAVDAILVVTFTRAATAELKSRVRERIAGTLAYLD 86

Query: 94  ------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                 D  ++  +  ++ +   ++ +   R  L   L+T     + TIH +C+  +   
Sbjct: 87  GTAADGDPFVAQLVAALESQAIARAQI---RERLDLALQTFDEAAIFTIHGYCQRALADT 143

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKK 174
           P  A +   FA+   E   +L  EA +
Sbjct: 144 PFAAALP--FALELTEDDLELRLEAAR 168


>gi|326204932|ref|ZP_08194785.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
 gi|325984981|gb|EGD45824.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
          Length = 1049

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 28/149 (18%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRV 82
           +D  ++  V A AG+GKT+ +V R+  L      P      ++  +T T  AA  M  R+
Sbjct: 340 ADSEKNTLVKAGAGTGKTYSMVSRIAYLCNNKNKPVISLADSIAMVTFTNEAANNMKRRL 399

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            ++   + +L+             K P            I  +E    ++V TIH F + 
Sbjct: 400 KQLFINYFNLT-------------KNPK----------YIKFIEEVEQMQVSTIHKFAKK 436

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           I+Q    E  +   F++   + S++ I E
Sbjct: 437 IIQTAGFELGLGKSFSVTSSDFSREKIYE 465


>gi|118587527|ref|ZP_01544951.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163]
 gi|118431978|gb|EAV38720.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163]
          Length = 748

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L  RV  L+   +  P ++L +T T  AA EM  R+  +         
Sbjct: 25  IMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAITFTNKAAREMKERIAGLVDEEDARSI 84

Query: 86  -ITAWSHLSDEILSAEITKI 104
            ++ +  LS  IL  ++ KI
Sbjct: 85  WVSTFHALSARILRRDVDKI 104


>gi|49475840|ref|YP_033881.1| DNA helicase II [Bartonella henselae str. Houston-1]
 gi|49238648|emb|CAF27892.1| DNA helicase II [Bartonella henselae str. Houston-1]
          Length = 778

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L +  A P  +L +T T  AA EM  R+ E+I
Sbjct: 64  VLAGAGTGKTRVLTTRISHILHSGLASPQQILAVTFTNKAAREMKMRIGELI 115


>gi|219856415|ref|YP_002473537.1| hypothetical protein CKR_3072 [Clostridium kluyveri NBRC 12016]
 gi|219570139|dbj|BAH08123.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 754

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++   N +PS +L +T T  AA EM  R+ +++       D
Sbjct: 33  ILAGAGSGKTRVLTYRIAHMIKDLNIYPSKILAITFTNKAAGEMKDRIRKLV------GD 86

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E+ S                                + V T H+ C  I+++   +    
Sbjct: 87  EVDS--------------------------------MWVSTFHSSCVRILRREIDKLGYN 114

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +FAI D    K LI++  K
Sbjct: 115 RNFAIYDSYDQKVLIKQCMK 134


>gi|254388945|ref|ZP_05004176.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702663|gb|EDY48475.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1162

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 41/193 (21%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV             +
Sbjct: 2   AGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERV----------RTAL 51

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           + A +T      P++                PG  ++ T HAF   ++    L   +   
Sbjct: 52  VRAGVTDPDAIDPDRP---------------PGEPRISTYHAFAGQLLTDHGLRIGLEPT 96

Query: 157 FAIADEEQSKKLIEEAKK-------------STLASIMLDNNEELKKAFY--EILEISND 201
             +  +    +L  +  +             STL   +L  + EL +     E+L   ++
Sbjct: 97  ARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDLLALDAELSEHLVRPELLAAHDE 156

Query: 202 EDIETLISDIISN 214
           E +ETL S  ++N
Sbjct: 157 ELLETLASASLTN 169


>gi|149177805|ref|ZP_01856404.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148843295|gb|EDL57659.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 657

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AG+GKT ++  R++ L+     P  +L +T T  AA EM  R+
Sbjct: 33 VLAGAGTGKTRVITYRMVELIRTGVAPDKILSVTFTNKAAKEMQERM 79


>gi|153956081|ref|YP_001396846.1| PcrA [Clostridium kluyveri DSM 555]
 gi|146348939|gb|EDK35475.1| PcrA [Clostridium kluyveri DSM 555]
          Length = 745

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++   N +PS +L +T T  AA EM  R+ +++       D
Sbjct: 24  ILAGAGSGKTRVLTYRIAHMIKDLNIYPSKILAITFTNKAAGEMKDRIRKLV------GD 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E+ S                                + V T H+ C  I+++   +    
Sbjct: 78  EVDS--------------------------------MWVSTFHSSCVRILRREIDKLGYN 105

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +FAI D    K LI++  K
Sbjct: 106 RNFAIYDSYDQKVLIKQCMK 125


>gi|255262002|ref|ZP_05341344.1| hypothetical protein TR2A62_3590 [Thalassiobium sp. R2A62]
 gi|255104337|gb|EET47011.1| hypothetical protein TR2A62_3590 [Thalassiobium sp. R2A62]
          Length = 789

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           V+A  GSGKTH   +RV+ L+     P+ +  +T T+ AA E+  R+
Sbjct: 237 VTAGPGSGKTHTATERVINLVQQGLSPARIRLITFTRVAAEEVGRRI 283


>gi|298345243|ref|YP_003717930.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235304|gb|ADI66436.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063]
          Length = 877

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L +R+  LL      P  +L +T T  AAAEM  RV  ++
Sbjct: 82  VMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLV 133


>gi|197124367|ref|YP_002136318.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196174216|gb|ACG75189.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 1111

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 25/148 (16%)

Query: 38  ANAGSGKTHILVQRVL-RLLLANAHPSTLL----CLTHTKAAAAEMSHRVLEIITAWSHL 92
           A AG+GKT +LV R++ R+   +  P+  L     +T T+ AA E+  R+ E       L
Sbjct: 28  AGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRKAAGELRLRIREA------L 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
              +  A++T ++            R  L   L       V TIH+F + +++  P+EA 
Sbjct: 82  LRALARADLTDLR------------RRRLADALSALDTAHVGTIHSFADRLLRLRPVEAR 129

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI 180
           ++  + I +++    L++EA  + L ++
Sbjct: 130 LSPSYDIVEDDAP--LVDEAFAAFLHAV 155


>gi|295092248|emb|CBK78355.1| Superfamily I DNA and RNA helicases [Clostridium cf.
          saccharolyticum K10]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     +P  ++ +T T  AAAEM  RV +I+
Sbjct: 25 VLAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAAEMRERVDQIV 76


>gi|307730045|ref|YP_003907269.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1003]
 gi|307584580|gb|ADN57978.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1003]
          Length = 1232

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   L  +     
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 86

Query: 92  LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           + D+     I ++      P +  D   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 87  MDDDGGDPFIRRLFETTLAPERGVDREAAAKVVRRALRTFDQAAIHTIHAFCQRALQE 144


>gi|229097023|ref|ZP_04227991.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
 gi|228686419|gb|EEL40329.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
          Length = 825

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93
           V A AG+GKT +++ R+L LL+     PS ++ +T T+ AA  M  ++  ++ T +   S
Sbjct: 96  VKAGAGTGKTTVMIDRILYLLIKEEVKPSEIVMITFTRDAAQNMHTKLRNLLFTRFKATS 155

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQ 134
             +  + I K+   +    D S A+ LL  +    G GL VQ
Sbjct: 156 SVVFLSLIEKLNDIRIQTID-SFAKDLLKELGSLRGFGLNVQ 196


>gi|254476738|ref|ZP_05090124.1| UvrD/REP helicase domain protein [Ruegeria sp. R11]
 gi|214030981|gb|EEB71816.1| UvrD/REP helicase domain protein [Ruegeria sp. R11]
          Length = 786

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL+  +A P+ +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTARIVHLLMTGSAKPNEILAVTFTNKAAREMKDRV 95


>gi|254462521|ref|ZP_05075937.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium
          HTCC2083]
 gi|206679110|gb|EDZ43597.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 817

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ L+  A A P+ +L +T T  AA EM +RV
Sbjct: 52 AGAGTGKTKALTARIVHLMNAAKARPNEILAVTFTNKAAREMKNRV 97


>gi|172060153|ref|YP_001807805.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria MC40-6]
 gi|171992670|gb|ACB63589.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria
           MC40-6]
          Length = 1234

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVARLLETTLGDAGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|15826976|ref|NP_301239.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN]
 gi|221229454|ref|YP_002502870.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
 gi|13632801|sp|Q9CD72|PCRA_MYCLE RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13092523|emb|CAC29661.1| putative ATP-dependent DNA helicase [Mycobacterium leprae]
 gi|219932561|emb|CAR70246.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 778

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A +   S +L +T T  AAAEM  RV  ++        
Sbjct: 38  IVAGAGSGKTTVLARRIAYLIAARSVGVSQILAITFTNKAAAEMRERVARLVGD------ 91

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                           T   + V T H+ C  I++ Q  L   +
Sbjct: 92  -------------------------------HTGPSMWVSTFHSTCVRILRNQASLIGGL 120

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S+ L++
Sbjct: 121 NSNFSIYDVDDSRSLLQ 137


>gi|134295236|ref|YP_001118971.1| exodeoxyribonuclease V subunit beta [Burkholderia vietnamiensis G4]
 gi|134138393|gb|ABO54136.1| exodeoxyribonuclease V, beta subunit [Burkholderia vietnamiensis
           G4]
          Length = 1234

 Score = 40.4 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +    +    D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVARLLETTLGEGGALDPDTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|315649755|ref|ZP_07902838.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453]
 gi|315274729|gb|EFU38110.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453]
          Length = 776

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+    A P ++L +T T  AA EM  RV +++
Sbjct: 30 IMAGAGSGKTRVLTHRIGYLIATRKAAPWSILAITFTNKAAREMQERVSKLV 81


>gi|307298415|ref|ZP_07578218.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915580|gb|EFN45964.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 969

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 35/138 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLL--------LANAHPSTLLCLTHTKAAAAEMSHRV 82
            +  +V+A+AG+GKT  LV+  + +           + H   ++ +T T  AA EM  RV
Sbjct: 2   NKDIFVTASAGTGKTFSLVKEYVGVFDRSFRIGERLDVH--NVVAITFTNKAAREMKDRV 59

Query: 83  LEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              IT   H    I S       G  KP ++ MS A               + TIH+FCE
Sbjct: 60  ---ITEIDH---RIASGH----PGSWKPLRNKMSYAW--------------ISTIHSFCE 95

Query: 142 AIMQQFPLEANITSHFAI 159
            I+++  L A I   F I
Sbjct: 96  RILRESALFAGIDPGFQI 113


>gi|260900330|ref|ZP_05908725.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308108575|gb|EFO46115.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 1227

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 38  IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A     D ++   + +         D  +A  +L+          V TIH F
Sbjct: 98  IHDARIAFARGQSYDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 151 CQRMLTQNAFESG 163


>gi|258507444|ref|YP_003170195.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
 gi|257147371|emb|CAR86344.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
 gi|259648798|dbj|BAI40960.1| hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 595

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          V A  GSGKT +L  +VLRLL   N     + C+THT  A  E+  R+
Sbjct: 32 VVAGPGSGKTTVLAAKVLRLLTTRNYEDKGICCITHTNVAVKEILARL 79


>gi|294790788|ref|ZP_06755946.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304]
 gi|294458685|gb|EFG27038.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304]
          Length = 885

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++Q ++E +    P  +  + A AGSGKT +L +R+   L    A+PS +L +T T  AA
Sbjct: 41  LNQQQAEAVRYQGP--ALLIGAGAGSGKTRVLTRRIAWALSQWGAYPSQILAITFTNKAA 98

Query: 76  AEMSHRVLEII 86
            EM  R+  ++
Sbjct: 99  REMKERLATLV 109


>gi|295688867|ref|YP_003592560.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756]
 gi|295430770|gb|ADG09942.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756]
          Length = 806

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P  LL +T T  AA EM  R+  II
Sbjct: 60  VLAGAGTGKTRVLTTRLAHILATGRARPWELLAVTFTNKAAREMRERITHII 111


>gi|315653960|ref|ZP_07906876.1| UvrD/REP helicase subfamily [Lactobacillus iners ATCC 55195]
 gi|315488656|gb|EFU78302.1| UvrD/REP helicase subfamily [Lactobacillus iners ATCC 55195]
          Length = 642

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%)

Query: 36 VSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A  G+GKTH +V+ +  +     L+ N+    +LC+T+T  A  E+++R+
Sbjct: 22 IYAGPGAGKTHFIVENIKNIISTNKLITNSENRKILCITYTNKAVDEIANRL 73


>gi|306829519|ref|ZP_07462709.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249]
 gi|304428605|gb|EFM31695.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249]
          Length = 1217

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I      +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIGQQIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|118399025|ref|XP_001031839.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89286173|gb|EAR84176.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1961

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           ++ SD  +   + A AGSGKT  LV R+  LL     P+ ++  T    A   +S +V E
Sbjct: 701 VIVSDIKKDTKIIACAGSGKTTTLVIRLKYLLDHGVKPNQIIISTFNIEAGKHISQKVYE 760

Query: 85  IITAWSHLSDEILSAEITKI 104
           +I      S  IL   I KI
Sbjct: 761 MIGKEVQQS--ILIGNIDKI 778


>gi|76811844|ref|YP_332924.1| exodeoxyribonuclease V subunit beta [Burkholderia pseudomallei
           1710b]
 gi|76581297|gb|ABA50772.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1710b]
          Length = 1934

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 691 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 750

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 751 TGDGGGDPFIARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 805

Query: 144 MQQ 146
           +Q+
Sbjct: 806 LQE 808


>gi|291536958|emb|CBL10070.1| Superfamily I DNA and RNA helicases [Roseburia intestinalis
          M50/1]
          Length = 689

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 9/77 (11%)

Query: 14 IDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPSTL 65
          IDL+++ KS   L   SD   S   ++ AGSGKT+ L+Q  L+ +++        H   +
Sbjct: 9  IDLMNEKKSLNKLFECSDSFTSVVFNSGAGSGKTYALIQ-CLKYIISIHHDDLKNHNQKI 67

Query: 66 LCLTHTKAAAAEMSHRV 82
           C+T+T  AA  + H++
Sbjct: 68 GCITYTNVAAEHIKHQL 84


>gi|254432144|ref|ZP_05045847.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001]
 gi|197626597|gb|EDY39156.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001]
          Length = 800

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  + A P+ LL +T T  AA EM  R LE+         
Sbjct: 25  VVAGAGSGKTRALTHRIAHLIGHHGADPAELLAVTFTNKAAREMKER-LEL--------- 74

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+ ++ + Q  +P +   + + R L   I  E    L + T HA    +++      +
Sbjct: 75  -LLAQKLAQSQFGQPWSTLPLLEQRQLRSRIYREVIKDLWIGTFHALFARLLRFDIDKFR 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171
            P   + T  F+I DE   + LI+E
Sbjct: 134 DPEGLSWTRQFSIYDEGDVQSLIKE 158


>gi|312874821|ref|ZP_07734840.1| UvrD/REP helicase [Lactobacillus iners LEAF 2053A-b]
 gi|311089566|gb|EFQ47991.1| UvrD/REP helicase [Lactobacillus iners LEAF 2053A-b]
          Length = 642

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%)

Query: 36 VSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A  G+GKTH +V+ +  +     L+ N+    +LC+T+T  A  E+++R+
Sbjct: 22 IYAGPGAGKTHFIVENIKNIISTNKLITNSENRKILCITYTNKAVDEIANRL 73


>gi|171318888|ref|ZP_02908022.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5]
 gi|171095918|gb|EDT40856.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5]
          Length = 1234

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVARLLETTLGDAGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|157691415|ref|YP_001485877.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
 gi|157680173|gb|ABV61317.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
          Length = 740

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  I+
Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERVQAIL 80


>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 849

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 41/178 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +L     ++  + S+   +  V A AG+GKT ++  RV   +        +LCLT T  A
Sbjct: 6   ELTGLNDAQSEVVSNLNDNLLVMAPAGTGKTKVISLRVAGFINQGIEAKEILCLTFTNKA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E++ R+L++      L+ E+                                    V+
Sbjct: 66  CHELAERLLKVTNG---LAKEVF-----------------------------------VK 87

Query: 135 TIHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEELK 189
           T H+FC + I ++      I+  F++ DEE  K L+ +  K    +A +     +ELK
Sbjct: 88  TFHSFCFQLIKEEAKNFGKISRDFSVMDEEDGKFLVRQLMKDDYVIADLAYQYLQELK 145


>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 849

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 41/178 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +L     ++  + S+   +  V A AG+GKT ++  RV   +        +LCLT T  A
Sbjct: 6   ELTGLNDAQSEVVSNLNDNLLVMAPAGTGKTKVISLRVAGFINQGIEAKEILCLTFTNKA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E++ R+L++      L+ E+                                    V+
Sbjct: 66  CHELAERLLKVTNG---LAKEVF-----------------------------------VK 87

Query: 135 TIHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEELK 189
           T H+FC + I ++      I+  F++ DEE  K L+ +  K    +A +     +ELK
Sbjct: 88  TFHSFCFQLIKEEAKNFGKISRDFSVMDEEDGKFLVRQLMKDDYVIADLAYQYLQELK 145


>gi|302536761|ref|ZP_07289103.1| UvrD/REP helicase [Streptomyces sp. C]
 gi|302445656|gb|EFL17472.1| UvrD/REP helicase [Streptomyces sp. C]
          Length = 832

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 34/163 (20%)

Query: 23  EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           EQL   + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ 
Sbjct: 29  EQLACVTAPAAPQVIVAGAGSGKTTVMAARVVWLVGTGTVAPEQVLGLTFTNKAAGELAE 88

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTIHAF 139
           RV + + A + ++D              P+ +D+            T GG  ++ T HAF
Sbjct: 89  RVRKAL-AQAGVTD------------PDPSPADVEAG---------TAGGEPRISTYHAF 126

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
              +++   L   +         E S +L+ +A +  LA+ +L
Sbjct: 127 AGQLLKDHGLRIGL---------EPSARLLADATRFQLAAKVL 160


>gi|167762854|ref|ZP_02434981.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC
           43183]
 gi|167699194|gb|EDS15773.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC
           43183]
          Length = 781

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA------- 88
           V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+   + A       
Sbjct: 25  VIAGAGSGKTRVLTYKIAYLLENGYRPWDILALTFTNKAAREMKERIARQVGAERARHLW 84

Query: 89  ---WSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129
              +  +   IL AE  +I G  P  +  D + ++ LL +I++  G
Sbjct: 85  MGTFHSIFLRILHAEAAQI-GFTPKFTVYDTADSKSLLRSIIKEMG 129


>gi|158334598|ref|YP_001515770.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017]
 gi|158304839|gb|ABW26456.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017]
          Length = 780

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L++ +  +P  +L +T T  AA EM  R+ ++        D
Sbjct: 28  VVAGAGSGKTRALTYRISNLVMRHQVNPENILAVTFTNKAAREMKERIEKLFAEQLAQQD 87

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ------QFP 148
              + E+   Q +       +K R  +   +  P  L + T H+ C  +++      Q  
Sbjct: 88  HGKALELLAPQQQ-------TKLRSQVYKTITKP--LWIGTFHSLCARLLRMEIEKYQDE 138

Query: 149 LEANITSHFAIADEEQSKKLIEE 171
                  +F+I DE   + LI++
Sbjct: 139 KGRKWQRNFSIFDESDVQSLIKD 161


>gi|315656421|ref|ZP_07909310.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492980|gb|EFU82582.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 877

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L +R+  LL      P  +L +T T  AAAEM  RV  ++
Sbjct: 82  VMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLV 133


>gi|227486206|ref|ZP_03916522.1| ATP-dependent DNA helicase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235837|gb|EEI85852.1| ATP-dependent DNA helicase [Anaerococcus lactolyticus ATCC 51172]
          Length = 853

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           +S++++       A V A  G+GKT+ +V++V+ L+      P+ +L  T TK AA+E+
Sbjct: 3  NESQRIIIEKARTPAAVIAGPGTGKTYTIVKKVISLIKNEGISPNRILLTTFTKKAASEL 62

Query: 79 SHRVL 83
            R++
Sbjct: 63 QTRII 67


>gi|194367786|ref|YP_002030396.1| exodeoxyribonuclease V subunit beta [Stenotrophomonas maltophilia
           R551-3]
 gi|194350590|gb|ACF53713.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 1226

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 21  KSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           K  Q +A DP  +        + A+AG+GKT  L     RL++        +L +T T A
Sbjct: 8   KETQRMAGDPYLALPLDGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDA 67

Query: 74  AAAEMSHRVLEIITAWSHLSD------EILSAEITK------IQGKKPNKSDMSKARHLL 121
           A  E+  R+ E +   + L D      E   A +T+      +QG   + S + +   + 
Sbjct: 68  ATQELRKRIRERLALAARLVDLEPAEGEAPDARLTRDVLQRHLQGGSESASALKRRLQVA 127

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
              ++      + TIH FC  ++++  LE+  T
Sbjct: 128 ADEIDLA---SIFTIHGFCTRVLREHALESGHT 157


>gi|21673182|ref|NP_661247.1| DNA helicase II [Chlorobium tepidum TLS]
 gi|21646262|gb|AAM71589.1| DNA helicase II [Chlorobium tepidum TLS]
          Length = 759

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++  R+  L+      P  +L LT T  AA EM  R+  I+   S
Sbjct: 36 VLAGAGSGKTRVITYRIAHLIRNVGVLPQNILALTFTNKAAGEMRQRIDSILEYGS 91


>gi|328955121|ref|YP_004372454.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
 gi|328455445|gb|AEB06639.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
          Length = 847

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  ++      P  +L +T T  AAAEM  R+  ++        
Sbjct: 28  VLAGAGSGKTRVLTYRIAHMVADLGVRPWQILAITFTNKAAAEMRERIQALMDG------ 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G +                     G+ V T HA C  I+++       T
Sbjct: 82  -----------GMR---------------------GMWVCTFHAMCVRILREDADLIGYT 109

Query: 155 SHFAIADEEQSKKLIEE 171
             F I D++ S++L+ +
Sbjct: 110 GQFTIYDDDDSRRLVRD 126


>gi|194015861|ref|ZP_03054476.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061]
 gi|194012216|gb|EDW21783.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061]
          Length = 740

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  I+
Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERVQAIL 80


>gi|189463105|ref|ZP_03011890.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136]
 gi|189430084|gb|EDU99068.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136]
          Length = 784

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 41/149 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P ++L LT T  AA EM  R+   + A       
Sbjct: 25  VIAGAGSGKTRVLTYKIAYLLDNGYEPWSILALTFTNKAAREMKERIARRVGA------- 77

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +AR+L +            T H+    I++        ++
Sbjct: 78  -------------------ERARYLWMG-----------TFHSIFSRILRTEAAAIGFSA 107

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +F I D   SK LI    K+ +  + LD+
Sbjct: 108 NFTIYDAADSKSLI----KAIIKEMQLDD 132


>gi|187776812|ref|ZP_02993285.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC
          15579]
 gi|187775471|gb|EDU39273.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC
          15579]
          Length = 738

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
          +DL ++   EQ  A+        + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1  MDLKNKLNKEQYEAATTIDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFT 60

Query: 72 KAAAAEMSHRVLEII 86
            AA EM  R+  ++
Sbjct: 61 NKAAGEMKERIKALV 75


>gi|87124723|ref|ZP_01080571.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917]
 gi|86167602|gb|EAQ68861.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917]
          Length = 1214

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 21/155 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV-------LEIIT 87
           + A+AG+GKT  L   VLRL+   +   + LL +T T AAAAE+  R+       L+ + 
Sbjct: 18  LEASAGTGKTFALAHLVLRLITERDLDLNQLLVVTFTDAAAAELRDRIGRRLEQALQGLL 77

Query: 88  AWSHLSDEILSAEITKIQGKKP--------NKSDMSKARHL---LITILETPGGLKVQTI 136
           A     D   +      Q   P           +  + R L   L++ LE+     + TI
Sbjct: 78  AIQTPEDSAAAQCGAAQQEADPVLRDWLARQGQEAGRCRELASRLLSALESLERADITTI 137

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           H FC   +Q+  L++      A+  E  S +L  E
Sbjct: 138 HGFCRRTLQRQALQSGQAMDPAL--ESDSDRLCRE 170


>gi|282882609|ref|ZP_06291228.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B]
 gi|281297584|gb|EFA90061.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B]
          Length = 977

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 37/151 (24%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           + AG+GKT +L QR + ++ A N     +L LT T  A  EM++R+      +  L+   
Sbjct: 22  SGAGTGKTGVLTQRFINIIKAQNGKFDNILALTFTDKATEEMNNRI------YHELAKTS 75

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
               I K                           L + TIH+FC+ ++  +    +I S+
Sbjct: 76  YDFNIDK---------------------------LNIMTIHSFCKDLILSYNRYLHINSN 108

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           F + ++   + L++E+ K  L++    NNE+
Sbjct: 109 FDLDNDFFCQILLKESIKKILSTY---NNED 136


>gi|315498764|ref|YP_004087568.1| uvrd/rep helicase [Asticcacaulis excentricus CB 48]
 gi|315416776|gb|ADU13417.1| UvrD/REP helicase [Asticcacaulis excentricus CB 48]
          Length = 772

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT +L  R+  +L    A P  +LC+T T  AA EM  R   ++
Sbjct: 45 VLAGAGTGKTRVLTTRIAHILAQGLARPWEILCVTFTNKAAREMRERTTRLV 96


>gi|238921998|ref|YP_002935512.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
 gi|238873670|gb|ACR73378.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
          Length = 189

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 11/75 (14%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E  + I+QT+    +AS P          GSGKT +L  R+  L+      PS+++ LT 
Sbjct: 78  EQTEAITQTEGNIRVASVP----------GSGKTFVLTYRIAYLITELFVEPSSIVALTF 127

Query: 71  TKAAAAEMSHRVLEI 85
           T  AA++M HR+ +I
Sbjct: 128 TNKAASQMKHRLWKI 142


>gi|126664112|ref|ZP_01735105.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38]
 gi|126623826|gb|EAZ94521.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38]
          Length = 778

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 17 ISQ-TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          ISQ  +++QL          V A AGSGKT +L  R+  L+        +L LT T  AA
Sbjct: 8  ISQLNEAQQLPVLQKDGPMIVIAGAGSGKTRVLTVRIANLMSQGVDAFNILALTFTNKAA 67

Query: 76 AEMSHRVLEII 86
           EM  R+ +I+
Sbjct: 68 REMKKRIADIV 78


>gi|260428560|ref|ZP_05782539.1| DNA helicase II [Citreicella sp. SE45]
 gi|260423052|gb|EEX16303.1| DNA helicase II [Citreicella sp. SE45]
          Length = 815

 Score = 40.0 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL++  A P+ +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTSRIVHLLVSGKARPNEILSVTFTNKAAREMKERV 95


>gi|194246823|ref|YP_002004462.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
 gi|193807180|emb|CAP18621.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
          Length = 708

 Score = 40.0 bits (92), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 43/163 (26%)

Query: 17  ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           + Q  S+Q  A +   ++ ++ A AG+GKT  L  R+  L+   N +   +L +T T  A
Sbjct: 7   LKQLNSKQYQAVTSKDKAVYLVAGAGTGKTKTLTIRIAYLIKYLNINNEKILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R++ +                         K D+ K+               + 
Sbjct: 67  ASEMKERLVAM-------------------------KVDIYKST--------------IC 87

Query: 135 TIHAFCEAIMQQF--PLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+    I+++F   L  N  S+++I D + S K+I++  K 
Sbjct: 88  TFHSLGNRILKKFIHVLNNNFDSNYSILDIKDSLKIIKKISKD 130


>gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
          16608]
 gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
          16608]
          Length = 896

 Score = 40.0 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++
Sbjct: 27 VLASPGCGKTHILAERIKYARERGVKYEDMLCLTFTNRAAREMTNRIQKVV 77


>gi|290559702|gb|EFD93027.1| DNA helicase II [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 108

 Score = 40.0 bits (92), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 32/107 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + AN G+GKT  L  RV+ L+    + + ++CLT T  A  EM  ++           +E
Sbjct: 9   IKANPGTGKTTALADRVVELVKNGVNENEIVCLTFTNKAVDEMFDKITN-----KFKENE 63

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           I  A I                            GL + T H+FC A
Sbjct: 64  IEPARIN---------------------------GLTIATFHSFCNA 83


>gi|326318047|ref|YP_004235719.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374883|gb|ADX47152.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 818

 Score = 40.0 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMS 79
          EQL A + P   A + A AGSGKT +L  R+   LL N +  P  +L +T T  AA EM+
Sbjct: 38 EQLAAVTLPAGHALILAGAGSGKTRVLTTRI-AWLLQNGYVSPGGILAVTFTNKAAKEMT 96

Query: 80 HRV 82
           R+
Sbjct: 97 ARL 99


>gi|308234140|ref|ZP_07664877.1| UvrD/REP helicase [Atopobium vaginae DSM 15829]
 gi|328943635|ref|ZP_08241100.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829]
 gi|327491604|gb|EGF23378.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829]
          Length = 868

 Score = 40.0 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 47/156 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+      P ++L +T T  AA EM  R+  ++        
Sbjct: 61  VLAGAGSGKTRVLTYRIAYLIEEQGVSPWSILAITFTNKAAKEMRERIEALL-------- 112

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P ++                 G+ V T HA C  I++        +
Sbjct: 113 --------------PGRTQ----------------GMWVSTFHAMCVRILRTHAERLGYS 142

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            +F I D + +K+LI+         IM D N + KK
Sbjct: 143 KNFTIYDTDDTKRLIKH--------IMGDLNLDPKK 170


>gi|297538070|ref|YP_003673839.1| UvrD/REP helicase [Methylotenera sp. 301]
 gi|297257417|gb|ADI29262.1| UvrD/REP helicase [Methylotenera sp. 301]
          Length = 677

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT ++ Q++  L+  A   P  +  +T T  AA EM  RV ++         
Sbjct: 22  VLAGAGSGKTRVITQKISYLIDEAGYSPKEIAAITFTNKAAREMQERVGKLMVGKNIKGL 81

Query: 86  -ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILET 127
            I  +  L  ++L AE + + G KP  S  D S +  +L  IL T
Sbjct: 82  TIATFHSLGLQMLRAEAS-LLGYKPQFSILDSSDSFKILADILAT 125


>gi|258593628|emb|CBE69969.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 991

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          + A AG+GKT ++  R+  L+ +  A P  +L LT T+ AAAEM  RV
Sbjct: 37 IIAGAGTGKTTVIAHRIAHLINSRRARPEQVLALTFTEKAAAEMERRV 84


>gi|289422673|ref|ZP_06424513.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
          653-L]
 gi|289156852|gb|EFD05477.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
          653-L]
          Length = 625

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEI 85
          V A  GSGKT ++  R++ ++  ++ P T +L ++ TKA++ EM  R L++
Sbjct: 21 VIAGPGSGKTRVIAHRIINMVKNHSIPPTRILAISFTKASSLEMKSRTLDM 71


>gi|170739391|ref|YP_001768046.1| UvrD/REP helicase [Methylobacterium sp. 4-46]
 gi|168193665|gb|ACA15612.1| UvrD/REP helicase [Methylobacterium sp. 4-46]
          Length = 789

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           EQ  A + T     V A AG+GKT +L  R+  L+ +  A P  +L +T T  AA EM  
Sbjct: 38  EQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIAIGRARPFDILAVTFTNKAAREMKE 97

Query: 81  RVLEIITA 88
           R+  +I A
Sbjct: 98  RIGGLIGA 105


>gi|260062807|ref|YP_003195887.1| putative helicase [Robiginitalea biformata HTCC2501]
 gi|88784375|gb|EAR15545.1| putative helicase [Robiginitalea biformata HTCC2501]
          Length = 771

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+ +I+
Sbjct: 23 VIAGAGSGKTRVLTYRIAHLMNQGVDAFNILSLTFTNKAAREMKKRIADIV 73


>gi|326776760|ref|ZP_08236025.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
 gi|326657093|gb|EGE41939.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 1199

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 35/167 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 49  IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 108

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV + + A          A +T      P+                 PG   + T
Sbjct: 109 GELAERVRKALIA----------AGVTDPDVIDPDNP---------------PGEPTIST 143

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            HAF   ++ +  L   +         E S +L+ +A +  LA+ +L
Sbjct: 144 YHAFAGRLLTEHGLRIGL---------EPSTRLLADATRYQLAAKVL 181


>gi|309808403|ref|ZP_07702302.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
 gi|308168231|gb|EFO70350.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
          Length = 473

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%)

Query: 36 VSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A  G+GKTH +V+ +  +     L+ N+    +LC+T+T  A  E+++R+
Sbjct: 22 IYAGPGAGKTHFIVENIKNIISTNKLITNSENRKILCITYTNKAVDEIANRL 73


>gi|189485729|ref|YP_001956670.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
 gi|170287688|dbj|BAG14209.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
          Length = 772

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AG+GKT ++  R+  LL       ++L +T T  AA+EM  R+ ++I  
Sbjct: 26 IFAGAGTGKTRVITHRIAYLLSLGVVSQSVLAVTFTNKAASEMKKRISDLIPG 78


>gi|87199314|ref|YP_496571.1| ATP-dependent DNA helicase Rep [Novosphingobium aromaticivorans
          DSM 12444]
 gi|87134995|gb|ABD25737.1| ATP-dependent DNA helicase, Rep family [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 765

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AG+GKT  L  R+  LL    A PS +LC+T T  AA EM  RV  +I
Sbjct: 38 AGAGTGKTAALTARLANLLRQRLAWPSEILCVTFTNKAAREMRERVGNLI 87


>gi|311067135|ref|YP_003972058.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
 gi|310867652|gb|ADP31127.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
          Length = 739

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  I+
Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80


>gi|304390802|ref|ZP_07372754.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325685|gb|EFL92931.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 877

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L +R+  LL      P  +L +T T  AAAEM  RV  ++
Sbjct: 82  VMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLV 133


>gi|118595284|ref|ZP_01552631.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
 gi|118441062|gb|EAV47689.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
          Length = 725

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 39/144 (27%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +SA + A AGSGKT +L  R   L+    A P  +L +T T  AA EM            
Sbjct: 29  QSALILAGAGSGKTKVLTSRFAWLIQNQIASPGGILAVTFTNKAAKEM------------ 76

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                     + +I  + P                  P G+ V T H  C   +++   +
Sbjct: 77  ----------LVRISAQLP----------------INPRGMWVGTFHGLCNRFLKKHYQD 110

Query: 151 ANITSHFAIADEEQSKKLIEEAKK 174
           A++   F I D    K  I+   K
Sbjct: 111 ASLPQIFQILDSADQKSAIKRVMK 134


>gi|322373657|ref|ZP_08048193.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150]
 gi|321278699|gb|EFX55768.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150]
          Length = 1217

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L ++        L   T T  AA E+  R+           ++
Sbjct: 45  VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERL-----------EK 93

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L+ ++ +++          + R  L   +   G   + T+ AF + ++ Q+     ++ 
Sbjct: 94  RLTEQLGQVE--------TDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145

Query: 156 HFAIADEEQSKKLIE 170
            F I  +   + L++
Sbjct: 146 IFRIMTDPAEQTLMK 160


>gi|319902365|ref|YP_004162093.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108]
 gi|319417396|gb|ADV44507.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108]
          Length = 763

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI 71


>gi|296118283|ref|ZP_06836864.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968841|gb|EFG82085.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM
           20306]
          Length = 926

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 51/206 (24%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANA 60
           Y N  Q +     L+     +Q+ A   T S   + A AGSGKT +L +R+  L+     
Sbjct: 119 YRNRPQLNVNEDKLVEGLNPQQVEAVQHTGSPLLIIAGAGSGKTAVLTRRIAYLMGTRGV 178

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  +L +T T  AAAEM  RV +++                      P    M      
Sbjct: 179 APWEILAITFTNKAAAEMKERVGQLV---------------------GPVAERMW----- 212

Query: 121 LITILETPGGLKVQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                       V T H+ C  I+ QQ  L   + ++F I D + S++L        L  
Sbjct: 213 ------------VATFHSICVRILRQQAQLVPGLNTNFTIYDGDDSRRL--------LTM 252

Query: 180 IMLDNNEELKKAFYEIL--EISNDED 203
           I  D   ++KK    +L  +ISN ++
Sbjct: 253 IAKDMQLDIKKFTSRVLANQISNHKN 278


>gi|224024112|ref|ZP_03642478.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM
          18228]
 gi|224017334|gb|EEF75346.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM
          18228]
          Length = 793

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL     P ++L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLDQGYKPWSILALTFTNKAAREMKERI 71


>gi|163800600|ref|ZP_02194501.1| putative ATP-dependent DNA helicase [Vibrio sp. AND4]
 gi|159176043|gb|EDP60837.1| putative ATP-dependent DNA helicase [Vibrio sp. AND4]
          Length = 637

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          +S  AGSGKT+ LV+ +LR ++ +     + C+T+T AA +E+  R+
Sbjct: 30 LSGGAGSGKTYSLVE-ILRAVINDTPSVNIACITYTNAAVSEIEDRL 75


>gi|153002977|ref|YP_001377302.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152026550|gb|ABS24318.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 779

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++V R+ RL+      P  +L +T T  AA EM  R+           +
Sbjct: 28  VLAGAGSGKTRVIVHRIARLVRDERVMPWHVLAVTFTNKAAGEMKDRL-----------E 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            +L  + ++                           L VQT HAF    +++    A + 
Sbjct: 77  ALLGTQASE---------------------------LWVQTFHAFGARFLRREAARAGLP 109

Query: 155 SHFAIADEEQSKKLIE 170
             FAI D++   ++++
Sbjct: 110 PSFAIYDDDDQIRVVK 125


>gi|328957929|ref|YP_004375315.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4]
 gi|328674253|gb|AEB30299.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4]
          Length = 748

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L  R+  L+   N +P  +L +T T  AA EM  RV  +         
Sbjct: 28  IMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAKEMKERVTRLMKEGGSDVW 87

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILE 126
           ++ +  +   IL  +I +I   K    SD S+ + L+  IL+
Sbjct: 88  VSTFHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILK 129


>gi|323499832|ref|ZP_08104791.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326]
 gi|323315073|gb|EGA68125.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326]
          Length = 1206

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGSAETRHQAPLTVDQILVVTFTEAATAELRDRIRAR 82

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I A + L+    S+    I        D  +A  +L+          V TIH FC+ ++ 
Sbjct: 83  IHA-ARLAFSRGSSHDPVIAPLLEEMPDHKQAAEVLLQAERQMDEAAVYTIHGFCQRMLT 141

Query: 146 QFPLEAN 152
           Q   E+ 
Sbjct: 142 QNAFESG 148


>gi|296330119|ref|ZP_06872601.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305673364|ref|YP_003865036.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
          str. W23]
 gi|296152708|gb|EFG93575.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305411608|gb|ADM36727.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
          str. W23]
          Length = 739

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  I+
Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80


>gi|294782871|ref|ZP_06748197.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA]
 gi|294481512|gb|EFG29287.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA]
          Length = 737

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 39/145 (26%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           AS    S  + A AGSGKT  +  R+  ++      P ++L +T T  AA EM  RV   
Sbjct: 17  ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERV--- 73

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                    E L  E+ K                             + T H+F   +++
Sbjct: 74  ---------EDLVGEVAK--------------------------SCTISTFHSFGMRLLR 98

Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170
            +  E     +F I D +  +++I+
Sbjct: 99  MYAAEVGYNPNFTIYDTDDQRRIIK 123


>gi|289640615|ref|ZP_06472787.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509504|gb|EFD30431.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1229

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 22  SEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79
           SEQ+ A+  P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++
Sbjct: 70  SEQIAAATAPLEPGVIVAGAGSGKTSVMAARVVWLVATGQVAPGDVLGLTFTTKAAGELT 129

Query: 80  HRV 82
            R+
Sbjct: 130 DRI 132


>gi|253580201|ref|ZP_04857468.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848720|gb|EES76683.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 744

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+     +P  +L +T T  AA+EM  RV +I+   S    
Sbjct: 25  ILAGAGSGKTRVLTHRIAYLIDKKGINPWNILAITFTNKAASEMRERVDKIVGFGSE--- 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+ C  I++++       
Sbjct: 82  -----------------------------------SVWVSTFHSTCVRILRRYIDRLGYD 106

Query: 155 SHFAIADEEQSKKLIEE 171
           + FAI D E  K L++E
Sbjct: 107 TRFAIYDTEDQKTLMKE 123


>gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
 gi|118571902|gb|ABL06653.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
          Length = 769

 Score = 40.0 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 40/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  L+ A       +L +T T  AAAE+  RV+ ++        
Sbjct: 32  IVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFTNKAAAEVRERVVSLVGG------ 85

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                                +A+++ ++           T H+ C  I++ Q  L   +
Sbjct: 86  ---------------------RAKYMWVS-----------TFHSTCVRILRNQAALIKGL 113

Query: 154 TSHFAIADEEQSKKLIE 170
            S+F+I D + S++L++
Sbjct: 114 NSNFSIYDADDSRRLLQ 130


>gi|16077729|ref|NP_388543.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis
          str. 168]
 gi|221308498|ref|ZP_03590345.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis
          str. 168]
 gi|221312821|ref|ZP_03594626.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis
          str. NCIB 3610]
 gi|221317745|ref|ZP_03599039.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis
          str. JH642]
 gi|221322024|ref|ZP_03603318.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis
          str. SMY]
 gi|7674149|sp|O34580|PCRA_BACSU RecName: Full=ATP-dependent DNA helicase pcrA
 gi|2577965|emb|CAA75552.1| PcrA protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2632975|emb|CAB12481.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis
          str. 168]
          Length = 739

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  I+
Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80


>gi|237808232|ref|YP_002892672.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237500493|gb|ACQ93086.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 698

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 16/86 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR-----------VL 83
           V A AG+GKT  ++ R   LL+ A A P  +L L   K AA EM  R             
Sbjct: 217 VLAGAGTGKTSTMIGRAGYLLVTAQAQPEKILMLAFAKKAAGEMQERQDKCLRPLLKNAT 276

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP 109
            +I  +  L  EI    I K++GK P
Sbjct: 277 PVIKTFHALGLEI----IGKVEGKWP 298


>gi|223040423|ref|ZP_03610697.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267]
 gi|222878273|gb|EEF13380.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267]
          Length = 698

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          DL+ Q    Q +A+     A  + A AGSGKT  +  R+  L+      PS  L LT T 
Sbjct: 7  DLLDQLNENQRVAASHIDGAMLILAGAGSGKTKTITTRLAYLISEVGIAPSNTLTLTFTN 66

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R L+++
Sbjct: 67 KAANEMRTRALKML 80


>gi|198275887|ref|ZP_03208418.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM
          17135]
 gi|198271516|gb|EDY95786.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM
          17135]
          Length = 784

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          ++ ++ +++++ E +L ++    + V A AGSGKT +L  ++  LL     P ++L LT 
Sbjct: 2  TDYLNELNESQREAVLYNEG--PSLVIAGAGSGKTRVLTYKIAYLLDNGYEPWSILALTF 59

Query: 71 TKAAAAEMSHRV 82
          T  AA EM  R+
Sbjct: 60 TNKAAREMKERI 71


>gi|167766232|ref|ZP_02438285.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1]
 gi|167712059|gb|EDS22638.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1]
 gi|291559884|emb|CBL38684.1| ATP-dependent DNA helicase PcrA [butyrate-producing bacterium
          SSC/2]
          Length = 733

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L+    +P  ++ +T T  AA EM  RV +++
Sbjct: 26 AGAGSGKTRVLTHRIAYLMDQGVNPYHIMAITFTNKAAKEMRERVDDLV 74


>gi|73748886|ref|YP_308125.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1]
 gi|73660602|emb|CAI83209.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1]
          Length = 738

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 43/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A  GSGKT ++  R+  L+ +    P  ++ +T T  AA EM  R+ ++  +      
Sbjct: 25  ILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTFTNKAAREMETRLNQLAPS------ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                             G L + T HA C  I++Q  L   + 
Sbjct: 79  --------------------------------AVGRLTMGTFHAICARILRQDGLPLGVP 106

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           S F I D++  + LI++A    +A + LD
Sbjct: 107 SDFVIYDDDDQQSLIKQA----MAELELD 131


>gi|255692465|ref|ZP_05416140.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM
          17565]
 gi|260621733|gb|EEX44604.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM
          17565]
          Length = 789

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT +L  ++  LL    +P  +L LT T  AA EM  R+   + A
Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERIARQVGA 78


>gi|116334214|ref|YP_795741.1| superfamily I DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099561|gb|ABJ64710.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis ATCC 367]
          Length = 750

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  RV  L+   N  P  +L +T T  AA EM  RV++++        
Sbjct: 27  VLAGAGSGKTRVLTHRVAYLIEHNNVMPWRILAITFTNKAAKEMRERVIKLL-------- 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P+ +D+                  V T HA C  I+++   +    
Sbjct: 79  -------------GPDGNDVW-----------------VSTFHALCVRILRRDADKLGYN 108

Query: 155 SHFAIADEEQSKKLIE 170
             F IAD  + + LI+
Sbjct: 109 RAFTIADPGEQRTLIK 124


>gi|116510847|ref|YP_808063.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus
          lactis subsp. cremoris SK11]
 gi|123025697|sp|Q033I1|ADDA_LACLS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
          Full=ATP-dependent helicase/nuclease AddA
 gi|116106501|gb|ABJ71641.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus
          lactis subsp. cremoris SK11]
          Length = 1203

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+E+  R+
Sbjct: 19 KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRL 69


>gi|321314390|ref|YP_004206677.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5]
 gi|320020664|gb|ADV95650.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5]
          Length = 739

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  I+
Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80


>gi|313200171|ref|YP_004038829.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312439487|gb|ADQ83593.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 720

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          P +SA + A AGSGKT +L  R+  L+      P+ LL +T T  AA EM  R+
Sbjct: 25 PHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPNGLLAVTFTNKAAKEMLTRL 78


>gi|291483101|dbj|BAI84176.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. natto
          BEST195]
          Length = 739

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  I+
Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80


>gi|113954443|ref|YP_729463.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311]
 gi|113881794|gb|ABI46752.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311]
          Length = 803

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  + A P+ +L +T T  AA EM  R LE+         
Sbjct: 24  VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEL--------- 73

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+  + + Q  +P +     + R L   I  E    L + T HA    +++      +
Sbjct: 74  -LLAQRLAQSQFGQPWSTLPPVEQRQLRTRIYREITKELWIGTFHALFARMLRFDIDKFK 132

Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171
            P     T  F+I DE  ++ L++E
Sbjct: 133 DPEGLTWTKQFSIYDEADAQSLVKE 157


>gi|37521963|ref|NP_925340.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212962|dbj|BAC90335.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
          Length = 793

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT +L  R+  L+      P  +L +T T  AA EM  R+L++
Sbjct: 26 VVAGAGSGKTRVLTYRIAHLIETYQVDPEHILAVTFTNKAAGEMKERILQL 76


>gi|317497585|ref|ZP_07955903.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|316895144|gb|EFV17308.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 733

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L+    +P  ++ +T T  AA EM  RV +++
Sbjct: 26 AGAGSGKTRVLTHRIAYLMDQGVNPYHIMAITFTNKAAKEMRERVDDLV 74


>gi|289432882|ref|YP_003462755.1| UvrD/REP helicase [Dehalococcoides sp. GT]
 gi|288946602|gb|ADC74299.1| UvrD/REP helicase [Dehalococcoides sp. GT]
          Length = 738

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 43/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A  GSGKT ++  R+  L+ +    P  ++ +T T  AA EM  R+ ++  +      
Sbjct: 25  ILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTFTNKAAREMETRLNQLAPS------ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                             G L + T HA C  I++Q  L   + 
Sbjct: 79  --------------------------------AVGRLTMGTFHAICARILRQDGLPLGVP 106

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           S F I D++  + LI++A    +A + LD
Sbjct: 107 SDFVIYDDDDQQSLIKQA----MAELELD 131


>gi|256369829|ref|YP_003107340.1| DNA helicase II [Brucella microti CCM 4915]
 gi|255999992|gb|ACU48391.1| DNA helicase II [Brucella microti CCM 4915]
          Length = 858

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           Q+H E  D +     EQ  A   T     V A AG+GKT +L  R+  +L    A+PS +
Sbjct: 37  QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95

Query: 66  LCLTHTKAAAAEMSHRVLEII 86
           L +T    AA EM  R+  ++
Sbjct: 96  LAVTFINKAAREMKERIGHLV 116


>gi|114766608|ref|ZP_01445560.1| DNA helicase II, putative [Pelagibaca bermudensis HTCC2601]
 gi|114541148|gb|EAU44201.1| DNA helicase II, putative [Roseovarius sp. HTCC2601]
          Length = 816

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL++  A P+ +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTSRIVHLLVSGKARPNEILSVTFTNKAAREMKTRV 95


>gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1146

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  + QRV+ L+      P  +L LT T+ A AE+  RV   +T 
Sbjct: 40 VVAGAGSGKTATMAQRVVYLVATGQVRPDQVLGLTFTRKATAELDQRVASRLTG 93


>gi|270294147|ref|ZP_06200349.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275614|gb|EFA21474.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 784

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI 71


>gi|253998105|ref|YP_003050168.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253984784|gb|ACT49641.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 720

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          P +SA + A AGSGKT +L  R+  L+      P+ LL +T T  AA EM  R+
Sbjct: 25 PHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPNGLLAVTFTNKAAKEMLTRL 78


>gi|241896132|ref|ZP_04783428.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC
           33313]
 gi|241870646|gb|EER74397.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC
           33313]
          Length = 759

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 14/104 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L  RV  L+   +  P  +L +T T  AA EM  R+ ++         
Sbjct: 25  IMAGAGSGKTRVLTHRVAHLIQDLDVLPWRILAITFTNKAAREMKERISQLVEESDAEAV 84

Query: 86  -ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILE 126
            ++ +  L+  IL  +I K+ G K + S  D S  R L+  IL+
Sbjct: 85  WVSTFHALAVRILRRDIDKL-GYKKDFSIIDASAQRTLIKRILK 127


>gi|227523030|ref|ZP_03953079.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
 gi|227089848|gb|EEI25160.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 56/190 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++  N   P  +L +T T  AA EM  RV +++        
Sbjct: 27  IMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E+   + V T HA C  I+++   +    
Sbjct: 80  -------------------------------ESGDDVWVSTFHALCVRILRRNIDQLGFN 108

Query: 155 SHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNEEL-KKAFYEILEISND 201
             F IAD  + + L++               ++ L+SI    N+ L  KAF    +   D
Sbjct: 109 RAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKNDLLTPKAF----KAQAD 164

Query: 202 EDIETLISDI 211
            D + +++D+
Sbjct: 165 SDFDQIVADV 174


>gi|195977957|ref|YP_002123201.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|251764553|sp|B4U2H1|ADDA_STREM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|195974662|gb|ACG62188.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 1214

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 21/125 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLSD 94
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+ + + TA +   D
Sbjct: 46  VSASAGSGKTFVMVERILDKILRGISVDRLFISTFTVKAATELIERIEKKLHTAIAETQD 105

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L A +   Q +  +++D+                    T+ AF + ++ Q      I+
Sbjct: 106 YQLKAYLND-QLQALSQADIG-------------------TMDAFAQKLVHQHGYVLGIS 145

Query: 155 SHFAI 159
            HF I
Sbjct: 146 PHFRI 150


>gi|157412666|ref|YP_001483532.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215]
 gi|157387241|gb|ABV49946.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215]
          Length = 802

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+  N+  P  +L +T T  AA EM  R LE++ A
Sbjct: 29 VVAGAGSGKTKALTHRIANLIENNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81


>gi|148244458|ref|YP_001219152.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus
          Vesicomyosocius okutanii HA]
 gi|146326285|dbj|BAF61428.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus
          Vesicomyosocius okutanii HA]
          Length = 717

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          ++A + A AGSGKT +L+ R+  L+   + H   +L +T T  AA EM  R+ +++
Sbjct: 24 KNALILAGAGSGKTKVLIHRIAYLITQKDIHIDAILAVTFTNKAATEMCERLSKLL 79


>gi|88705431|ref|ZP_01103142.1| DNA helicase II [Congregibacter litoralis KT71]
 gi|88700521|gb|EAQ97629.1| DNA helicase II [Congregibacter litoralis KT71]
          Length = 717

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          V A AGSGKT +LV R+  L+ A    P  +L +T T  AA EM  R+  ++   +H
Sbjct: 27 VLAGAGSGKTRVLVHRIAWLIRAEGLSPHAVLAVTFTNKAAREMRGRIEHMLQIPTH 83


>gi|319954736|ref|YP_004166003.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319423396|gb|ADV50505.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 686

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AG+GKT  ++ R   L+ +   PS +  LT TK AA E+  RV
Sbjct: 24 VLAGAGTGKTRTIIARAAHLIASGVDPSKIQILTFTKKAANEIVERV 70


>gi|262170720|ref|ZP_06038398.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451]
 gi|261891796|gb|EEY37782.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451]
          Length = 1208

 Score = 40.0 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++ 
Sbjct: 85  LHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143

Query: 146 QFPLEA 151
           Q   E+
Sbjct: 144 QNAFES 149


>gi|307547016|ref|YP_003899495.1| DNA-dependent helicase II [Halomonas elongata DSM 2581]
 gi|307219040|emb|CBV44310.1| DNA-dependent helicase II [Halomonas elongata DSM 2581]
          Length = 762

 Score = 40.0 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPS 63
           ++F     T  L     +++   S P  +  V A AGSGKT +LV R+  L+ A    P 
Sbjct: 25  DAFPMDDVTAILDQMNPAQREAVSAPQGNMLVLAGAGSGKTRVLVHRIAWLMQAEGLSPY 84

Query: 64  TLLCLTHTKAAAAEMSHRV 82
            +L +T T  AA EM  R+
Sbjct: 85  AVLAVTFTNKAAREMRTRL 103


>gi|294786537|ref|ZP_06751791.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305]
 gi|315226115|ref|ZP_07867903.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105]
 gi|294485370|gb|EFG33004.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305]
 gi|315120247|gb|EFT83379.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105]
          Length = 1674

 Score = 40.0 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76
          +  + E ++ +   +   + A AGSGKT+++ +R+ +L+  +   P  +L LT T+ AA 
Sbjct: 10 ANEQQEDIIQAPADQDLLIVAGAGSGKTYVMTKRIAKLITDDGVAPHKILGLTFTRKAAG 69

Query: 77 EMSHRVLEIITAWS 90
          E+  RV +  ++ S
Sbjct: 70 ELLDRVTKETSSLS 83


>gi|169833925|ref|YP_001694551.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6]
 gi|251764563|sp|B1IBR6|ADDA_STRPI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|168996427|gb|ACA37039.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6]
          Length = 1216

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAANELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|254566359|ref|XP_002490290.1| Mitochondrial inner membrane localized ATP-dependent DNA helicase
          [Pichia pastoris GS115]
 gi|238030086|emb|CAY68009.1| Mitochondrial inner membrane localized ATP-dependent DNA helicase
          [Pichia pastoris GS115]
 gi|328350684|emb|CCA37084.1| hypothetical protein PP7435_Chr1-0950 [Pichia pastoris CBS 7435]
          Length = 701

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          +P  +  + A  G GKTH L+ R++ LL +   P  +L L+ T  A   +  R+++++
Sbjct: 27 EPLTALKIVAGPGCGKTHTLIARIVHLLNSEVDPCQILVLSLTNRAVLSLRSRLIDLV 84


>gi|160889899|ref|ZP_02070902.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC
          8492]
 gi|317478904|ref|ZP_07938052.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
 gi|156860891|gb|EDO54322.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC
          8492]
 gi|316904938|gb|EFV26744.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
          Length = 784

 Score = 40.0 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI 71


>gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 886

 Score = 40.0 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  + QRV+ L+      P  +L LT T+ A AE+  RV
Sbjct: 40 VVAGAGSGKTATMAQRVVHLVATGQVRPDQILGLTFTRKATAELDQRV 87


>gi|258627298|ref|ZP_05722082.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603]
 gi|258580336|gb|EEW05301.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603]
          Length = 1208

 Score = 40.0 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++ 
Sbjct: 85  LHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143

Query: 146 QFPLEA 151
           Q   E+
Sbjct: 144 QNAFES 149


>gi|227554836|ref|ZP_03984883.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis
           HH22]
 gi|227176036|gb|EEI57008.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis
           HH22]
          Length = 405

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|205356745|ref|ZP_03223505.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni CG8421]
 gi|205345384|gb|EDZ32027.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni CG8421]
          Length = 676

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ LA+        V A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIGRL 69


>gi|220927829|ref|YP_002504738.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10]
 gi|219998157|gb|ACL74758.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10]
          Length = 785

 Score = 40.0 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+  +  +PS +L +T T  AA EM  R+  +I
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEQHGIYPSNILAITFTNKAAREMKERIAGLI 75


>gi|225075883|ref|ZP_03719082.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens
           NRL30031/H210]
 gi|224952829|gb|EEG34038.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens
           NRL30031/H210]
          Length = 666

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 49/187 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AA EM  RV +++        
Sbjct: 20  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVSKMLPK------ 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                               S+ R           GL + T H+    I+++   +    
Sbjct: 74  --------------------SQTR-----------GLTICTFHSLGMKILREEANQIGYK 102

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210
            +F+I D   S K+I E    T         E + KA ++I    ND    ED+    S+
Sbjct: 103 KNFSILDSTDSAKIIGELLGGT-------GKEAIFKAQHQISLWKNDLKTPEDVVQTASN 155

Query: 211 IISNRTA 217
           +   +TA
Sbjct: 156 VWEQQTA 162


>gi|149025505|ref|ZP_01836438.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72]
 gi|147929377|gb|EDK80374.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72]
          Length = 1216

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAANELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|148243810|ref|YP_001220049.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|146400373|gb|ABQ28907.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5]
          Length = 717

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           V A AGSGKT  L  RV  L++    P  +L ++ ++ AAAEM  R   I
Sbjct: 55  VIAGAGSGKTSTLAHRVAHLIVNGVDPRRILLMSFSRRAAAEMIRRAERI 104


>gi|85714693|ref|ZP_01045680.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
 gi|85698578|gb|EAQ36448.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
          Length = 814

 Score = 40.0 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P  +L +T T  AA EM HR+ +++
Sbjct: 53  VLAGAGTGKTRVLTTRIAHILSQGRARPGEVLSVTFTNKAAREMKHRLGQML 104


>gi|254225834|ref|ZP_04919438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51]
 gi|125621648|gb|EAZ49978.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51]
          Length = 1208

 Score = 40.0 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++ 
Sbjct: 85  LHD-ARLAFARGASEDLLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143

Query: 146 QFPLEA 151
           Q   E+
Sbjct: 144 QNAFES 149


>gi|302386124|ref|YP_003821946.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
 gi|302196752|gb|ADL04323.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
          Length = 762

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+   + +P  +L +T T  AA EM  RV  ++
Sbjct: 24 VLAGAGSGKTRVLTHRIAYLIEEKSINPWNILAITFTNKAAGEMRERVDRLV 75


>gi|262166384|ref|ZP_06034121.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223]
 gi|262026100|gb|EEY44768.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223]
          Length = 1208

 Score = 40.0 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++ 
Sbjct: 85  LHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143

Query: 146 QFPLEA 151
           Q   E+
Sbjct: 144 QNAFES 149


>gi|146280569|ref|YP_001170722.1| DNA-dependent helicase II [Pseudomonas stutzeri A1501]
 gi|145568774|gb|ABP77880.1| DNA helicase II [Pseudomonas stutzeri A1501]
          Length = 729

 Score = 40.0 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 39/142 (27%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A AGSGKT +LV R+  L  +  A   ++L +T T  AAAEM  R+ +++  
Sbjct: 23  PLGRQLVLAGAGSGKTRVLVHRIAWLHQVERASLHSILSVTFTNKAAAEMRQRIEQLL-- 80

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
             H++                                  P G+ V T H     +++   
Sbjct: 81  --HVN----------------------------------PQGMWVGTFHGLAHRLLRAHW 104

Query: 149 LEANITSHFAIADEEQSKKLIE 170
            EA +  +F I D +  ++L++
Sbjct: 105 REAKLAENFQILDSDDQQRLVK 126


>gi|319426281|gb|ADV54355.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens 200]
          Length = 1256

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    LRLLL +   + L C     +T T AA  E+  R+   I 
Sbjct: 35  SRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRRIQ 94

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 L   I    +  +    P   + S A       L++     + TIH FC+ I+ 
Sbjct: 95  VAFKCFLGLPIEDPFVQALYDNTP-VDERSIALRRFDLALKSLDEAAIFTIHGFCQRILS 153

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 154 DLAFESSLLFESDFTLDDSE 173


>gi|121613648|ref|YP_001000466.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 81-176]
 gi|87249507|gb|EAQ72467.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 81-176]
          Length = 676

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ LA+        V A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIGRL 69


>gi|329118947|ref|ZP_08247642.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464975|gb|EGF11265.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200]
          Length = 671

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 42/155 (27%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAA 76
           SQT++ + L        +V A AGSGKT ++ +++  ++  A   P T+  +T T  AA 
Sbjct: 6   SQTEAVRYLGG----PLFVLAGAGSGKTRVITEKIAYMITQAGYKPHTIAAITFTNKAAR 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +++                            S+ R           GL V T 
Sbjct: 62  EMQERVAKMLP--------------------------RSQTR-----------GLTVCTF 84

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           H+    I+++    A +  +F+I D   S K+I E
Sbjct: 85  HSLGMRILREEAHAAGLKKNFSILDATDSGKIIGE 119


>gi|327389308|gb|EGE87653.1| ATP-dependent helicase/nuclease subunit A domain protein
          [Streptococcus pneumoniae GA04375]
          Length = 183

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERL 91


>gi|289191863|ref|YP_003457804.1| UvrD/REP helicase [Methanocaldococcus sp. FS406-22]
 gi|288938313|gb|ADC69068.1| UvrD/REP helicase [Methanocaldococcus sp. FS406-22]
          Length = 734

 Score = 40.0 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          WV A  GSGKT  LV R L+L+   N +P +++  T T+ AA  +  R+
Sbjct: 35 WVIAGPGSGKTETLVIRTLKLIFVDNVNPKSIVITTFTEKAAKNIKDRI 83


>gi|182436134|ref|YP_001823853.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464650|dbj|BAG19170.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1162

 Score = 40.0 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 35/167 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 17  IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV + + A          A +T      P+                 PG   + T
Sbjct: 77  GELAERVRKALIA----------AGVTDPDVIDPDNP---------------PGEPTIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            HAF   ++ +  L   +         E S +L+ +A +  LA+ +L
Sbjct: 112 YHAFAGRLLTEHGLRIGL---------EPSTRLLADATRYQLAAKVL 149


>gi|154175325|ref|YP_001408248.1| acyl carrier protein [Campylobacter curvus 525.92]
 gi|112802789|gb|EAU00133.1| acyl carrier protein [Campylobacter curvus 525.92]
          Length = 677

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ  A+  P     + A+AG+GKT  +V R+  LL        +L LT T  AA
Sbjct: 3  LSRLNKEQYTAATAPAGHNLIIASAGTGKTSTIVARIAHLLNLGIDAKRILLLTFTNKAA 62

Query: 76 AEMSHRV 82
          AEM  R+
Sbjct: 63 AEMIERL 69


>gi|227512902|ref|ZP_03942951.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
 gi|227083902|gb|EEI19214.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 56/190 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++  N   P  +L +T T  AA EM  RV +++        
Sbjct: 27  IMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLD------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E+   + V T HA C  I+++   +    
Sbjct: 80  -------------------------------ESGDDVWVSTFHALCVRILRRNIDQLGFN 108

Query: 155 SHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNEEL-KKAFYEILEISND 201
             F IAD  + + L++               ++ L+SI    N+ L  KAF    +   D
Sbjct: 109 RAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKNDLLTPKAF----KAQAD 164

Query: 202 EDIETLISDI 211
            D + +++D+
Sbjct: 165 SDFDQIVADV 174


>gi|109898585|ref|YP_661840.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
 gi|109700866|gb|ABG40786.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
          Length = 957

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT ++V R   LL +  A P  +L L + + AA E+  R+   +   S  +   
Sbjct: 259 AGAGTGKTSVMVGRAGYLLTSGQAKPDDILLLAYGQKAATEIDERIKHKLDGQSIKASTF 318

Query: 97  LSAE---ITKIQGKKP 109
            S     IT ++GKKP
Sbjct: 319 HSLGLYIITSVEGKKP 334


>gi|253578540|ref|ZP_04855812.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850858|gb|EES78816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 608

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86
          V A  GSGKT ++V+R   ++     P S++L +T ++AAA EM  R L+ +
Sbjct: 20 VLAGPGSGKTSVIVERTAYMINEGKIPASSILVVTFSRAAATEMKERFLKFV 71


>gi|328884882|emb|CCA58121.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 919

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 35/167 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     V A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 27  IPFTPEQTACITAPLAPQVVVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 86

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV             ++ A +T      P+               E PG  ++ T
Sbjct: 87  GELAERV----------RTALVRAGVTDPDVIDPD---------------EPPGEPRIST 121

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            HAF   ++    L   +         E + +L+ +A +  LA+ +L
Sbjct: 122 YHAFAGRLLTDHGLRIGL---------EPTSRLLADATRYQLAARVL 159


>gi|325860059|ref|ZP_08173185.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325482344|gb|EGC85351.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 1111

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH--LSD 94
           A+AGSGKT  L    + L++ N      +L +T T  A  EM  R+L  +   +H     
Sbjct: 27  ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHHLPGS 86

Query: 95  EILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +    ++ +  G +    + + ++A  LL          +VQTI AF +++++    E N
Sbjct: 87  QAYFDQVVRKTGFQETVIRENAAEALSLLTHHYNE---FRVQTIDAFFQSVLRNLARELN 143

Query: 153 ITSHFAI 159
           +T++  I
Sbjct: 144 LTANLRI 150


>gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
          multacida DSM 20544]
 gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
          multacida DSM 20544]
          Length = 874

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL 83
          D T +  + A AG+GKT+ L  R+  +L    A P  +LCLT T  A  EM  R++
Sbjct: 28 DLTDNILLLAPAGTGKTNTLAYRIANILAEGRAEPEEILCLTFTNKACREMKERIV 83


>gi|169630596|ref|YP_001704245.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169242563|emb|CAM63591.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus]
          Length = 1078

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66
          E S  + L   T  +  +   P     V A AG+GKT  +  RV+  L+AN  A P  +L
Sbjct: 8  ELSRVLGLFEPTDEQAAVIGAPPGPMVVIAGAGAGKTETMAARVV-WLVANGYATPGQVL 66

Query: 67 CLTHTKAAAAEMSHRV 82
           LT T+ AAA++  RV
Sbjct: 67 GLTFTRKAAAQLLRRV 82


>gi|163789389|ref|ZP_02183828.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7]
 gi|159875243|gb|EDP69308.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7]
          Length = 750

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L  R+  L+   N +P  +L +T T  AA EM  RV  +         
Sbjct: 28  IMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAKEMKERVTRLMKEGGSDVW 87

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILE 126
           ++ +  +   IL  +I +I   K    SD S+ + L+  IL+
Sbjct: 88  VSTFHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILK 129


>gi|146293207|ref|YP_001183631.1| exodeoxyribonuclease V subunit beta [Shewanella putrefaciens CN-32]
 gi|145564897|gb|ABP75832.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens
           CN-32]
          Length = 1251

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    LRLLL +   + L C     +T T AA  E+  R+   I 
Sbjct: 30  SRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRRIQ 89

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 L   I    +  +    P   + S A       L++     + TIH FC+ I+ 
Sbjct: 90  VAFKCFLGLPIEDPFVQALYDNTP-VDERSIALRRFDLALKSLDEAAIFTIHGFCQRILS 148

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 149 DLAFESSLLFESDFTLDDSE 168


>gi|9257172|pdb|2PJR|A Chain A, Helicase Product Complex
 gi|9257173|pdb|2PJR|F Chain F, Helicase Product Complex
          Length = 548

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV
Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERV 76


>gi|147669647|ref|YP_001214465.1| UvrD/REP helicase [Dehalococcoides sp. BAV1]
 gi|146270595|gb|ABQ17587.1| UvrD/REP helicase [Dehalococcoides sp. BAV1]
          Length = 738

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 43/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A  GSGKT ++  R+  L+ +    P  ++ +T T  AA EM  R+ ++  +      
Sbjct: 25  ILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTFTNKAAREMETRLNQLAPS------ 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                             G L + T HA C  I++Q  L   + 
Sbjct: 79  --------------------------------AVGRLTMGTFHAICARILRQDGLPLGVP 106

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           S F I D++  + LI++A    +A + LD
Sbjct: 107 SDFVIYDDDDQQSLIKQA----MAELELD 131


>gi|120598716|ref|YP_963290.1| exodeoxyribonuclease V subunit beta [Shewanella sp. W3-18-1]
 gi|120558809|gb|ABM24736.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. W3-18-1]
          Length = 1256

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT+ +    LRLLL +   + L C     +T T AA  E+  R+   I 
Sbjct: 35  SRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRRIQ 94

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 L   I    +  +    P   + S A       L++     + TIH FC+ I+ 
Sbjct: 95  VAFKCFLGLPIEDPFVQALYDNTP-VDERSIALRRFDLALKSLDEAAIFTIHGFCQRILS 153

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 154 DLAFESSLLFESDFTLDDSE 173


>gi|297580957|ref|ZP_06942882.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385]
 gi|297534783|gb|EFH73619.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385]
          Length = 1208

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++ 
Sbjct: 85  LHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143

Query: 146 QFPLEA 151
           Q   E+
Sbjct: 144 QNAFES 149


>gi|124266334|ref|YP_001020338.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1]
 gi|124259109|gb|ABM94103.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1]
          Length = 788

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 12 ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
          E   L+     EQL A + P  +A + A AGSGKT +L  R+  L+      P+ ++ +T
Sbjct: 14 EAAGLLRHLNPEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLVQTGQVSPAGVMAVT 73

Query: 70 HTKAAAAEMSHRV 82
           T  AA EM  R+
Sbjct: 74 FTNKAAKEMLTRL 86


>gi|163746115|ref|ZP_02153474.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45]
 gi|161380860|gb|EDQ05270.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45]
          Length = 805

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM +RV +++
Sbjct: 50 AGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFTNKAAREMKNRVGQML 99


>gi|150397238|ref|YP_001327705.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
 gi|150028753|gb|ABR60870.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
          Length = 850

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
           ++ ++  D +S    EQ  A +       V A AG+GKT +L  R+  +L    A PS +
Sbjct: 35  RDKAQRPDYLSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAFPSQI 94

Query: 66  LCLTHTKAAAAEMSHRV 82
           L +T T  AA EM  R+
Sbjct: 95  LAVTFTNKAAREMKERI 111


>gi|77920551|ref|YP_358366.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77546634|gb|ABA90196.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
          Length = 678

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 38/135 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  R+  LL     PS  +L +T T  AA EM  RV  I+          
Sbjct: 25  AGAGSGKTRVITSRIAFLLQDRGVPSQAILAVTFTNKAAREMRERVEGIV---------- 74

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                    G+K  K                  G+ + T HA C  I+++   +     +
Sbjct: 75  ---------GRKQAK------------------GMVISTFHALCVRILKEDIEQLGYKKN 107

Query: 157 FAIADEEQSKKLIEE 171
           F+I       +LI +
Sbjct: 108 FSIYGGADQLRLIRD 122


>gi|121726748|ref|ZP_01679966.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52]
 gi|121630782|gb|EAX63166.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52]
          Length = 1208

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 138 CQRMLTQNAFESG 150


>gi|116747950|ref|YP_844637.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB]
 gi|116697014|gb|ABK16202.1| ATP-dependent DNA helicase, Rep family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 620

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A V+A AGSGKT  L  ++   L+ N H  P  +L +T T  AA EM  R LE IT  S
Sbjct: 21 AIVTAGAGSGKTRTLTNKIA-YLVNNLHYDPERILAITFTNKAADEMKSR-LEKITGRS 77


>gi|224531711|ref|ZP_03672343.1| exodeoxyribonuclease V, beta subunit [Borrelia valaisiana VS116]
 gi|224511176|gb|EEF81582.1| exodeoxyribonuclease V, beta subunit [Borrelia valaisiana VS116]
          Length = 1169

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86
          + A+AG+GKTH+L   V+ L+    +  + +L LT T+ A  EM  R+L+ I
Sbjct: 16 IEASAGTGKTHVLENVVISLMQNKLYSINEILVLTFTRKATEEMHTRILKAI 67


>gi|158522126|ref|YP_001529996.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
 gi|158510952|gb|ABW67919.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
          Length = 616

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A V+A AGSGKT  L  ++  L+     P  +L +T T  AA EM  R++ +
Sbjct: 20 ALVTAGAGSGKTRTLTAKIAHLISLGYPPERILAITFTNKAADEMKRRLVAL 71


>gi|238786418|ref|ZP_04630341.1| Helicase IV (75 kDa helicase) [Yersinia bercovieri ATCC 43970]
 gi|238712678|gb|EEQ04767.1| Helicase IV (75 kDa helicase) [Yersinia bercovieri ATCC 43970]
          Length = 684

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL  N A P  +L L   + AA EM+ R+
Sbjct: 214 VLAGAGSGKTSVLVARAAWLLRRNEARPEQILLLAFGRQAADEMNSRI 261


>gi|57237622|ref|YP_178870.1| putative ATP-dependent DNA helicase [Campylobacter jejuni RM1221]
 gi|86153455|ref|ZP_01071659.1| atp-dependent helicase [Campylobacter jejuni subsp. jejuni
          HB93-13]
 gi|57166426|gb|AAW35205.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni
          RM1221]
 gi|85843181|gb|EAQ60392.1| atp-dependent helicase [Campylobacter jejuni subsp. jejuni
          HB93-13]
 gi|315058231|gb|ADT72560.1| ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial
          type 1 [Campylobacter jejuni subsp. jejuni S3]
          Length = 676

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ LA+        V A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIGRL 69


>gi|169831771|ref|YP_001717753.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638615|gb|ACA60121.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +D +++    Q  A   P     V A AGSGKT +L  R+  L+ +    P  +L +T T
Sbjct: 7   LDFLTELNPAQAEAVCHPGGPLLVLAGAGSGKTRVLTSRIAYLVRVHRVEPHRILAITFT 66

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++    H  D+                                   L
Sbjct: 67  NRAAREMKERVASLV---PHAVDD-----------------------------------L 88

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            V T HA C  I+++   +   + +F I DE   + +I++  K
Sbjct: 89  WVMTFHAACLRILRREIEKLGYSKNFVIYDEADQQTVIKDCLK 131


>gi|159045024|ref|YP_001533818.1| DNA helicase II [Dinoroseobacter shibae DFL 12]
 gi|157912784|gb|ABV94217.1| DNA helicase II [Dinoroseobacter shibae DFL 12]
          Length = 807

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A AG+GKT  L  R+  LLL   A P+ +L +T T  AA EM  RV  ++
Sbjct: 61  AGAGTGKTKALTCRIAHLLLTGTARPNEILAVTFTNKAAREMKERVATLM 110


>gi|53713817|ref|YP_099809.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46]
 gi|52216682|dbj|BAD49275.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46]
          Length = 786

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL    +P  +L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71


>gi|83858903|ref|ZP_00952425.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633]
 gi|83853726|gb|EAP91578.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633]
          Length = 766

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT +L  R+  +L    A P  +L +T T  AA EM  RV +II
Sbjct: 42 VLAGAGTGKTRVLTTRLAHILATGKAQPWNILAVTFTNKAAREMKERVGKII 93


>gi|239908036|ref|YP_002954777.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
 gi|239797902|dbj|BAH76891.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
          Length = 1060

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 36/141 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLL----------------ANAHPSTLLCLTHTKAAAAEMS 79
           V A+AGSGKTH L  R + L+L                A A P  +L +T T  AAAEM 
Sbjct: 5   VKASAGSGKTHALTGRFIDLVLGASRDLPRACGDASDGAYAVPD-ILAVTFTNKAAAEMR 63

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK---ARHLLITILETPGGLKVQTI 136
            RV+E +                K     PN +   K   AR  L ++L     L ++TI
Sbjct: 64  DRVIEAL----------------KRLALDPNPAQPGKRATARRELESLLVHAQRLGIRTI 107

Query: 137 HAFCEAIMQQFPLEANITSHF 157
            +    + + F LE  +   F
Sbjct: 108 DSLLYLLARVFALELGLRPDF 128


>gi|258651813|ref|YP_003200969.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555038|gb|ACV77980.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 685

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72
          +D +   +   +LA  P+    V A AG+GKT  +  R+  L+   AHP S +L +T T 
Sbjct: 4  LDGLDDGQRAAVLA--PSGPVCVLAGAGTGKTRTITHRIAHLVATGAHPASEVLAVTFTT 61

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 62 RAAGEMRLRL 71


>gi|220913223|ref|YP_002488532.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
 gi|219860101|gb|ACL40443.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
          Length = 1167

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 20/154 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
           T  +  + S P     V A AGSGKT  +  RV+  L+AN    P  +L +T T+ AA E
Sbjct: 44  TAEQSAIISSPLTPRLVIAGAGSGKTATMADRVV-WLVANGWVRPEEVLGVTFTRKAAGE 102

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ R+   + A   ++              +   + M  A  +    LE     KV T H
Sbjct: 103 LASRIRAKLVALQRVA-------------ARGAGAPMFPAGMISSDALEP----KVSTYH 145

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           +F   I+  + L   +     +    Q+ +L  E
Sbjct: 146 SFASGIVSDYGLRLGVERDVVLLGGAQAWQLATE 179


>gi|218886850|ref|YP_002436171.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757804|gb|ACL08703.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1244

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           LA+ P +   V A  G+GKT  LV RVL L+        +L +T T+ AAAEM  R+
Sbjct: 568 LAAGP-QPVLVLAGPGTGKTRTLVGRVLHLVETGIDARRILAVTFTRRAAAEMDERL 623


>gi|167582406|ref|ZP_02375280.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           TXDOH]
          Length = 927

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFVARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|86150141|ref|ZP_01068368.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni CF93-6]
 gi|86152070|ref|ZP_01070282.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 260.94]
 gi|88597504|ref|ZP_01100738.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 84-25]
 gi|218562405|ref|YP_002344184.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni NCTC 11168]
 gi|315124301|ref|YP_004066305.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni ICDCCJ07001]
 gi|85839257|gb|EAQ56519.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni CF93-6]
 gi|85840855|gb|EAQ58105.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 260.94]
 gi|88190096|gb|EAQ94071.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 84-25]
 gi|112360111|emb|CAL34905.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni NCTC 11168]
 gi|284926023|gb|ADC28375.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni IA3902]
 gi|315018023|gb|ADT66116.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni ICDCCJ07001]
 gi|315928295|gb|EFV07611.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
          jejuni DFVF1099]
          Length = 676

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ LA+        V A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIGRL 69


>gi|331266377|ref|YP_004326007.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit
           (contains helicase and exonuclease domains)
           [Streptococcus oralis Uo5]
 gi|326683049|emb|CBZ00666.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit
           (contains helicase and exonuclease domains)
           [Streptococcus oralis Uo5]
          Length = 1217

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     S++
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQESND 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|297566348|ref|YP_003685320.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296850797|gb|ADH63812.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 726

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           A V A AGSGKT  +V R+  LL  +  +   +L +T T  AA EM  R+ +++   +H
Sbjct: 29 PALVVAGAGSGKTRTVVHRIAYLLREHRVYAGEILAVTFTNKAAGEMKERLGKMVGRAAH 88


>gi|90407538|ref|ZP_01215720.1| superfamily I DNA and RNA helicase [Psychromonas sp. CNPT3]
 gi|90311348|gb|EAS39451.1| superfamily I DNA and RNA helicase [Psychromonas sp. CNPT3]
          Length = 969

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII-------TAW 89
           A AG+GKT ++V R   LL +  A  S +L L + +AAA EM  R+++ +       T +
Sbjct: 207 AGAGTGKTSVMVGRAGYLLNSLQAQHSDVLLLAYGRAAADEMDARIVDKLRTDKISATTF 266

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             L   I    I +++G KP  S  +         ++T     +    A+C  I++ F
Sbjct: 267 HSLGQSI----IAQVEGAKPCLSIFAGDEKAKAKWIQTYFEGLIYNNEAYCSLILEYF 320


>gi|116617682|ref|YP_818053.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
 gi|116096529|gb|ABJ61680.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
          Length = 766

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+   N +P  +L +T T  AA EM  R+ +++
Sbjct: 44 IMAGAGSGKTRVLTHRIAHLVQDKNVYPWRILAITFTNKAAREMRERIAQLV 95


>gi|301163499|emb|CBW23050.1| putative helicase [Bacteroides fragilis 638R]
          Length = 786

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL    +P  +L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71


>gi|298492943|ref|YP_003723120.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708]
 gi|298234861|gb|ADI65997.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708]
          Length = 776

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          V A AGSGKT  L  R+  L+L +  +P  ++ +T T  AA EM  R+  + +
Sbjct: 28 VVAGAGSGKTRALTYRIANLILKHRVNPENIIAVTFTNKAAREMKDRIQRLFS 80


>gi|257139612|ref|ZP_05587874.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           E264]
          Length = 1272

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFVARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|167620501|ref|ZP_02389132.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           Bt4]
          Length = 1253

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFVARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|108803668|ref|YP_643605.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM
          9941]
 gi|108764911|gb|ABG03793.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM
          9941]
          Length = 694

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  R+  LL    A P  +L +T T  AA EM  RV
Sbjct: 10 VLAGAGSGKTRVLTHRIAYLLERGLAAPDEVLAITFTNKAADEMKERV 57


>gi|283957241|ref|ZP_06374702.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 1336]
 gi|283791253|gb|EFC30061.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 1336]
          Length = 676

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ LA+        V A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIGRL 69


>gi|255009480|ref|ZP_05281606.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147251|ref|ZP_07809444.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
 gi|313136018|gb|EFR53378.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
          Length = 786

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL    +P  +L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71


>gi|253565788|ref|ZP_04843243.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5]
 gi|251946067|gb|EES86474.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5]
          Length = 786

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL    +P  +L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71


>gi|229823253|ref|ZP_04449322.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC
          51271]
 gi|229787419|gb|EEP23533.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC
          51271]
          Length = 798

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          ++A AGSGKT +L  R+  L+     +P  +L +T T  AAAEM  RV  ++
Sbjct: 33 IAAGAGSGKTRVLTHRIAYLIQERQVNPWNILAITFTNKAAAEMRERVQRLV 84


>gi|83720729|ref|YP_443363.1| exodeoxyribonuclease V subunit beta [Burkholderia thailandensis
           E264]
 gi|83654554|gb|ABC38617.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           E264]
          Length = 1321

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 76  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 135

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 136 TGDDGGDPFVARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 190

Query: 144 MQQ 146
           +Q+
Sbjct: 191 LQE 193


>gi|60682035|ref|YP_212179.1| putative helicase [Bacteroides fragilis NCTC 9343]
 gi|60493469|emb|CAH08255.1| putative helicase [Bacteroides fragilis NCTC 9343]
          Length = 786

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL    +P  +L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71


>gi|301165556|emb|CBW25127.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
          Length = 752

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT  LV R+  LL   +  P  +L LT +  AA EM  R+  ++ A      
Sbjct: 26  ILAGAGSGKTKTLVTRISYLLEELHVSPYQVLALTFSNKAAREMRDRIGSMVEA------ 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                             G L++ T HAFC  I++       ++
Sbjct: 80  --------------------------------DVGALQITTFHAFCARILRSEANYLGLS 107

Query: 155 SHFAIADEEQSKKLIE 170
            +F I D  + K +++
Sbjct: 108 RNFTIYDTSEQKAVVK 123


>gi|301299732|ref|ZP_07205982.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|300852663|gb|EFK80297.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 744

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  RV  L+     +P  +L +T T  AA EM  RV
Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERV 74


>gi|225870333|ref|YP_002746280.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp. equi
           4047]
 gi|225699737|emb|CAW93495.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi
           subsp. equi 4047]
          Length = 1213

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 21/136 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLSD 94
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+ + + TA +   D
Sbjct: 46  VSASAGSGKTFVMVERILDKILRGIPVDCLFISTFTVKAATELIERIEKKLHTAIAETQD 105

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L A +   Q +  +++D+                    T+ AF + ++ Q      I+
Sbjct: 106 YQLKAYLND-QLQALSQADIG-------------------TMDAFAQKLVHQHGYVLGIS 145

Query: 155 SHFAIADEEQSKKLIE 170
            HF I  ++  + +++
Sbjct: 146 PHFRIIQDKAEQDILK 161


>gi|148926945|ref|ZP_01810622.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni CG8486]
 gi|145845029|gb|EDK22126.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni CG8486]
          Length = 676

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ LA+        V A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIGRL 69


>gi|153951004|ref|YP_001398295.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          doylei 269.97]
 gi|152938450|gb|ABS43191.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          doylei 269.97]
          Length = 676

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ LA+        V A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVTPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIGRL 69


>gi|90023404|ref|YP_529231.1| DNA-dependent helicase II [Saccharophagus degradans 2-40]
 gi|89953004|gb|ABD83019.1| ATP-dependent DNA helicase UvrD [Saccharophagus degradans 2-40]
          Length = 724

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLT 69
          S  +D +++ + E +  S P  +  V A AGSGKT +LV R+   + +    P  ++ +T
Sbjct: 4  SYLLDGLNEPQREAV--SAPLGNILVLAGAGSGKTRVLVHRIAWHIQVEGLSPHQIMAVT 61

Query: 70 HTKAAAAEMSHRVLEII 86
           T  AA EM  R+ EI+
Sbjct: 62 FTNKAAREMRSRLDEIM 78


>gi|329890022|ref|ZP_08268365.1| DNA helicase II [Brevundimonas diminuta ATCC 11568]
 gi|328845323|gb|EGF94887.1| DNA helicase II [Brevundimonas diminuta ATCC 11568]
          Length = 778

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          D +S    EQ  A + T     V A AG+GKT +L  R+  +L    A P  LL +T T 
Sbjct: 24 DYLSGLNPEQREAVETTEGPVLVLAGAGTGKTRVLTTRLAHILATGRAKPWELLVVTFTN 83

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 84 KAAREMRERIGHLI 97


>gi|289450713|ref|YP_003474825.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185260|gb|ADC91685.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 849

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%)

Query: 17  ISQTKSEQLLA-SDPTRSA--------WVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66
           I+Q K++ L   ++P + A         + A AGSGKT ++  R+  L+   N   S++L
Sbjct: 33  IAQNKTDLLAGLNEPQKKAVLHKDGPLLILAGAGSGKTKVITHRIAYLVEHENVPASSIL 92

Query: 67  CLTHTKAAAAEMSHRVLEII 86
            +T T  AA EM  R++++I
Sbjct: 93  AITFTNKAAQEMRQRIIKLI 112


>gi|260911425|ref|ZP_05918016.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260634472|gb|EEX52571.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 823

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          ++ +++++ E ++ +D  +   V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 5  LEKLNESQREAVVYTDGPQ--LVIAGAGSGKTRVLTFKIAHLLQLGLKPWNILALTFTNK 62

Query: 74 AAAEMSHRVLEII 86
          AA EM  R+ +++
Sbjct: 63 AANEMKARIGDLV 75


>gi|256419942|ref|YP_003120595.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
 gi|256034850|gb|ACU58394.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
          Length = 1066

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 5  NSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
          + +Q+H    ++  +   +Q  A D T     V A  G+GKT IL  R+ ++L   +  P
Sbjct: 4  DQYQQHFR--EMYDRLNRQQRQAVDQTDGPVMVIAGPGTGKTQILASRIGKILQDTDYQP 61

Query: 63 STLLCLTHTKAAAAEMSHRVLEII 86
            +LCLT+T A    M  R+   I
Sbjct: 62 QNILCLTYTDAGTVAMRKRLTGFI 85


>gi|224823759|ref|ZP_03696868.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
 gi|224604214|gb|EEG10388.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
          Length = 586

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 18/150 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA---NAHPSTL---LCLTHTKAAAAE----MSHRVLEI 85
           + A+AG+GKT  +     RLLL     A P ++   L +T+TKAA AE    + HR+ E+
Sbjct: 19  IEASAGTGKTWTIAALYTRLLLEERDGAPPPSIEQILVVTYTKAATAELRERLRHRLAEL 78

Query: 86  --ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   +   D  L A   +    +P   ++  AR  L   +       + TIH FC+ +
Sbjct: 79  AAVLDGTPTRDGFLLAMAQRF--AEPAAREL--ARQRLTAAITGFDAAAIYTIHGFCQRV 134

Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLIEE 171
           +     E+    T+     D E+  +++++
Sbjct: 135 LTDAAFESGQTFTAELIADDAERLTEVVDD 164


>gi|126667776|ref|ZP_01738743.1| ATP-dependent DNA helicase [Marinobacter sp. ELB17]
 gi|126627724|gb|EAZ98354.1| ATP-dependent DNA helicase [Marinobacter sp. ELB17]
          Length = 698

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          I  T+ +  +AS       V A AGSGKT  LV R  RL+  +  P  +L  T ++ AA 
Sbjct: 7  IPLTEQQNAIASHKDGPMIVLAGAGSGKTATLVARTGRLIDQHISPRNILITTFSRKAAT 66

Query: 77 EMSHRVLE 84
          E+  R+ E
Sbjct: 67 EIKKRLSE 74


>gi|109900377|ref|YP_663632.1| DNA helicase II [Pseudoalteromonas atlantica T6c]
 gi|109702658|gb|ABG42578.1| DNA helicase II [Pseudoalteromonas atlantica T6c]
          Length = 724

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+ Q   +Q  A + P     + A AGSGKT +LV R+  L+ +    P  +L +T T  
Sbjct: 6  LLEQLNDKQRDAVASPAADMLILAGAGSGKTRVLVHRIAWLMEVEGIAPWGILAVTFTNK 65

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+ E+
Sbjct: 66 AAREMRGRIEEL 77


>gi|302385714|ref|YP_003821536.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
 gi|302196342|gb|ADL03913.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
          Length = 614

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A  GSGKT  +  R+  L+      PS +L +T TKAAA EM  R   ++  
Sbjct: 24 VLAGPGSGKTFTITHRICHLIKEYGVDPSNILVITFTKAAAREMKERFESLVDG 77


>gi|262191393|ref|ZP_06049582.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93]
 gi|262032724|gb|EEY51273.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93]
          Length = 1208

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 23/132 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCVETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D S A  LL+          + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHSLAVSLLLNAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEA 151
           C+ ++ Q   E+
Sbjct: 138 CQRMLTQNAFES 149


>gi|241763721|ref|ZP_04761769.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241367026|gb|EER61411.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 821

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80
          EQL A + P   A + A AGSGKT +L  R+  LL    A P  +L +T T  AA EM  
Sbjct: 35 EQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYATPGGILAVTFTNKAAKEMVA 94

Query: 81 RV 82
          R+
Sbjct: 95 RL 96


>gi|163802370|ref|ZP_02196264.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4]
 gi|159173899|gb|EDP58713.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4]
          Length = 1212

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGTTDTKHRVPLTVDQILVVTFTEAATAELRDRIRAR 82

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  +     D ++   + +I        D  +A  +L+          V TIH F
Sbjct: 83  IHDARIAFSRGQSLDPVIQPLLVEI-------DDHKQATEILLQAERQMDEAAVYTIHGF 135

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 136 CQRMLTQNAFESG 148


>gi|328541555|ref|YP_004301665.1| UvrD/REP helicase [Polymorphum gilvum SL003B-26A1]
 gi|326415759|gb|ADZ72821.1| UvrD/REP helicase [Polymorphum gilvum SL003B-26A1]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 25/45 (55%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           A  G+GKT  LV RV  LL     P  +L LT +  AA EM+ R+
Sbjct: 216 AGPGTGKTQTLVARVEGLLADGVDPRRILLLTFSNKAAGEMAERI 260


>gi|153801076|ref|ZP_01955662.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3]
 gi|124123430|gb|EAY42173.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3]
          Length = 1208

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 138 CQRMLTQNAFESG 150


>gi|300214971|gb|ADJ79387.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 744

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  RV  L+     +P  +L +T T  AA EM  RV
Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERV 74


>gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2
           155]
 gi|118172641|gb|ABK73537.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2
           155]
          Length = 783

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 40/136 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L +R+  LL         +L +T T  AAAEM  RV++++        
Sbjct: 37  IVAGAGSGKTAVLTRRIAYLLAEREVGVGQVLAITFTNKAAAEMRERVVQLV-------- 88

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153
                               +KA             + V T H+ C  I++ Q  L   +
Sbjct: 89  -----------------GPRAKA-------------MWVSTFHSTCVRILRNQASLLPGL 118

Query: 154 TSHFAIADEEQSKKLI 169
            S+F+I D + S++L+
Sbjct: 119 NSNFSIYDSDDSRRLL 134


>gi|86358422|ref|YP_470314.1| DNA helicase II protein [Rhizobium etli CFN 42]
 gi|86282524|gb|ABC91587.1| DNA helicase II protein [Rhizobium etli CFN 42]
          Length = 808

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A PS +L +T T  AA EM  R+
Sbjct: 58  VLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 105


>gi|147674146|ref|YP_001217828.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|262168313|ref|ZP_06036010.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27]
 gi|146316029|gb|ABQ20568.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|227014216|gb|ACP10426.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|262023205|gb|EEY41909.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27]
          Length = 1208

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 138 CQRMLTQNAFESG 150


>gi|332171921|gb|AEE21175.1| DNA helicase II [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 724

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+ Q   +Q  A + P     + A AGSGKT +LV R+  L+ +    P  +L +T T  
Sbjct: 6  LLEQLNDKQRDAVASPAADMLILAGAGSGKTRVLVHRIAWLMEVEGIAPWGILAVTFTNK 65

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+ E+
Sbjct: 66 AAREMRGRIEEL 77


>gi|320108905|ref|YP_004184495.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319927426|gb|ADV84501.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 1126

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++L A     +  + A  G+GKT  LV RV  LL     P  +L LT +  AA+EM  R+
Sbjct: 201 QELAAKHRGEAYLLEAGPGTGKTRTLVARVEGLLADGVDPRRILVLTFSNKAASEMGERI 260


>gi|296393904|ref|YP_003658788.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296181051|gb|ADG97957.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 789

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT ++ +RV  LL   +A P  +L +T T  AA E+  RV
Sbjct: 28 IIAGAGSGKTSVITRRVAWLLAEGHARPGEILAITFTNKAAGELKERV 75


>gi|227432451|ref|ZP_03914438.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
 gi|227351772|gb|EEJ42011.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
          Length = 749

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+   N +P  +L +T T  AA EM  R+ +++
Sbjct: 27 IMAGAGSGKTRVLTHRIAHLVQDKNVYPWRILAITFTNKAAREMRERIAQLV 78


>gi|291288294|ref|YP_003505110.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885454|gb|ADD69154.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809]
          Length = 703

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT ++  R+  L+     PS  +L +T T  AA EM  R+L+++
Sbjct: 25 VLAGAGTGKTRVITYRIAHLINNMRVPSRNILAVTFTNKAAGEMKERILKLV 76


>gi|116253019|ref|YP_768857.1| ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257667|emb|CAK08764.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 829

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A PS +L +T T  AA EM  R+
Sbjct: 79  VLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 126


>gi|78223100|ref|YP_384847.1| DNA helicase/exodeoxyribonuclease V subunit beta [Geobacter
           metallireducens GS-15]
 gi|78194355|gb|ABB32122.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter
           metallireducens GS-15]
          Length = 1200

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI------ITA 88
           + A+AG+GKT+ +    LRL++     P  +L +T T+AA  E+  R+ E       + A
Sbjct: 17  IEASAGTGKTYAIACLYLRLVVERGLKPEEILVVTFTEAATKELRSRIRERLREARDVFA 76

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            +  +D+ L       + + P   +  +   L +   +      + TIH FC   +Q+  
Sbjct: 77  GAGTTDDFLLKMGDTNRKEWPGTEEALRRLDLALRTFDCAA---ISTIHGFCSRALQENA 133

Query: 149 LEA 151
            E+
Sbjct: 134 FES 136


>gi|255067628|ref|ZP_05319483.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256]
 gi|255048102|gb|EET43566.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256]
          Length = 1213

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 28/146 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84
           + A+AG+GKT+ +     RL++    P  ++L +T TKAA AE+  R+          LE
Sbjct: 23  IEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLHALE 82

Query: 85  IITAWSHLSDEILSAEITKIQGK-------KPNKSDMSKARHLLITILETPGGLK---VQ 134
            +    +LSD++ +       G        K   +  S+AR L++ +    G      + 
Sbjct: 83  SVEDTDNLSDDLEAYCRDNHPGDVFLTGLLKQALAQESRAR-LIVRLKAAIGQFDNAAIY 141

Query: 135 TIHAFCEAIMQQF------PLEANIT 154
           TIH FC+ I++ +      P++  +T
Sbjct: 142 TIHGFCQRILRDYAFLCHAPMDVELT 167


>gi|34557966|ref|NP_907781.1| ATP-dependent helicase [Wolinella succinogenes DSM 1740]
 gi|34483684|emb|CAE10681.1| ATP-DEPENDENT HELICASE [Wolinella succinogenes]
          Length = 675

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L S    +Q  +S P     + A+AG+GKT  +V R+  L+     P  +L LT T  
Sbjct: 1  MPLSSLNAEQQAASSAPLGHNLIIASAGTGKTSTIVGRIAHLMHQGITPQEILLLTFTNK 60

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 61 AANEMISRL 69


>gi|84501742|ref|ZP_00999914.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597]
 gi|84390363|gb|EAQ02922.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597]
          Length = 862

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL  A A P+ +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTARIVHLLSTARAAPNEILAVTFTNKAAKEMKARV 95


>gi|222823786|ref|YP_002575360.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
 gi|222539008|gb|ACM64109.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
          Length = 675

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ  A+  P     + A+AG+GKT  +V R+  LL    +P  ++ LT T  A+
Sbjct: 3  LSRLNEEQYKAACAPFGHNLIIASAGTGKTSTIVARIAFLLQNGTNPEKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIERL 69


>gi|261822106|ref|YP_003260212.1| DNA helicase IV [Pectobacterium wasabiae WPP163]
 gi|261606119|gb|ACX88605.1| UvrD/REP helicase [Pectobacterium wasabiae WPP163]
          Length = 685

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 18/101 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R   L+    A P  +L L   + AA EM+ R+LE +      +D
Sbjct: 214 VLAGAGSGKTSVLVARAAWLMHRQEAAPDQILLLAFGRKAAEEMNERILERLN-----TD 268

Query: 95  EILSAE--------ITKIQGKKPN----KSDMSKARHLLIT 123
           EI +          I +   K P     +SD  + R LLI+
Sbjct: 269 EIQAKTFHALALHIIQQASRKAPMISQLESDAKQRRELLIS 309


>gi|253680774|ref|ZP_04861577.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873]
 gi|253562623|gb|EES92069.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873]
          Length = 761

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71
          +DL S    EQ  A+        V A AGSGKT +L  R+  ++     P   +L +T T
Sbjct: 1  MDLKSLLNKEQYKAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60

Query: 72 KAAAAEMSHRVLEIIT 87
            AA EM  R+ ++++
Sbjct: 61 NKAAGEMKDRIKKLVS 76


>gi|134283868|ref|ZP_01770565.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           305]
 gi|134244856|gb|EBA44953.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           305]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|90962321|ref|YP_536237.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
 gi|90821515|gb|ABE00154.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
          Length = 744

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  RV  L+     +P  +L +T T  AA EM  RV
Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERV 74


>gi|126455228|ref|YP_001065663.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|242316641|ref|ZP_04815657.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|126228870|gb|ABN92410.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|242139880|gb|EES26282.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1106b]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|254197985|ref|ZP_04904407.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           S13]
 gi|169654726|gb|EDS87419.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           S13]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|254180283|ref|ZP_04886882.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1655]
 gi|184210823|gb|EDU07866.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1655]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|323693634|ref|ZP_08107834.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673]
 gi|323502325|gb|EGB18187.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673]
          Length = 813

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     +P  ++ +T T  AAAEM  RV +I+
Sbjct: 24 VLAGAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEMRERVDKIV 75


>gi|322514244|ref|ZP_08067305.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC
           25976]
 gi|322119856|gb|EFX91870.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC
           25976]
          Length = 1202

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEIITA 88
           +A + A+AG+GKT  +    LRLLL     P T   +L +T TKAA  E+  R+ + I A
Sbjct: 14  TALIEASAGTGKTFTMANLYLRLLLGIGCAPLTVEQILVVTFTKAATEELRDRIRKNIKA 73

Query: 89  WSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIM 144
                 E     S +      +   + +  +   L + I E    L  + TIH+FC+ ++
Sbjct: 74  CCTFLQEYDAEKSYDANDFFFQLGQQIESVEEAILRLRIAEREIDLASIFTIHSFCQKML 133

Query: 145 QQFPLEANI 153
            QF  ++ +
Sbjct: 134 FQFAFDSGM 142


>gi|296876208|ref|ZP_06900262.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC
           15912]
 gi|296432919|gb|EFH18712.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC
           15912]
          Length = 1221

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 33/186 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR+L  +        L   T T  AA E+  R              
Sbjct: 45  VSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELKER-------------- 90

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L +E+    GK    SD  + +  L   +       + T+ +F + ++ ++     +  
Sbjct: 91  -LESEL----GKALQASDDPELKQHLARQIADVATSDIGTMDSFTQKVLTRYGYLLGLAP 145

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
            F I      ++L++              NE  +  F    +  N E    ++ +    R
Sbjct: 146 QFRILQNASEQRLLQ--------------NEVFQAVFDRYYQGENQEAFVQMVKNFTGQR 191

Query: 216 TALKLI 221
             L L 
Sbjct: 192 KNLTLF 197


>gi|294787676|ref|ZP_06752920.1| DNA helicase II [Simonsiella muelleri ATCC 29453]
 gi|294483969|gb|EFG31652.1| DNA helicase II [Simonsiella muelleri ATCC 29453]
          Length = 735

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 13 TIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--TLLCL 68
          T DL+     +Q  A   +P  SA + A AGSGKT +L  R+   LL N H     ++ +
Sbjct: 7  TPDLLRHLNPQQAQAVECNPKTSALILAGAGSGKTRVLTTRI-AWLLQNQHAGVHNIMAV 65

Query: 69 THTKAAAAEMSHRV 82
          T T  AA EM  R+
Sbjct: 66 TFTNKAAKEMQTRL 79


>gi|282881333|ref|ZP_06290013.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis
          CRIS 5C-B1]
 gi|281304809|gb|EFA96889.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis
          CRIS 5C-B1]
          Length = 808

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  ++   +     P  +L LT T  AA EM  R+ +++
Sbjct: 25 VIAGAGSGKTRVLTYKIAYQIQQGMKPWNILALTFTNKAANEMKERIGQLV 75


>gi|255526474|ref|ZP_05393385.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296184847|ref|ZP_06853258.1| putative ATP-dependent DNA helicase PcrA [Clostridium
          carboxidivorans P7]
 gi|255509856|gb|EET86185.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296050629|gb|EFG90052.1| putative ATP-dependent DNA helicase PcrA [Clostridium
          carboxidivorans P7]
          Length = 754

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++   N +PS +L +T T  AA EM  RV  ++
Sbjct: 24 ILAGAGSGKTRVLTYRIAHMINDLNIYPSKILAITFTNKAAGEMKDRVRSLV 75


>gi|254881794|ref|ZP_05254504.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641188|ref|ZP_07995889.1| helicase [Bacteroides sp. 3_1_40A]
 gi|254834587|gb|EET14896.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387162|gb|EFV68040.1| helicase [Bacteroides sp. 3_1_40A]
          Length = 796

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 42/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P ++L LT T  AA EM  R+   +         
Sbjct: 25  VIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNKAAREMKERIARQVG-------- 76

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +AR+L +            T H+    I++        TS
Sbjct: 77  -------------------DQARYLWMG-----------TFHSIFSRILRCEAQAVGFTS 106

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +F I D   SK LI    KS +  + LD+
Sbjct: 107 NFTIYDSSDSKSLI----KSIVKEMQLDD 131


>gi|238917159|ref|YP_002930676.1| hypothetical protein EUBELI_01231 [Eubacterium eligens ATCC
          27750]
 gi|238872519|gb|ACR72229.1| Hypothetical protein EUBELI_01231 [Eubacterium eligens ATCC
          27750]
          Length = 621

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
          V A  GSGKT +L  RV  L+     +PS +L +T TKAAA +M
Sbjct: 23 VIAGPGSGKTTVLTHRVRYLIDRCGVNPSDILVITFTKAAAEQM 66


>gi|229521160|ref|ZP_04410580.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80]
 gi|229341692|gb|EEO06694.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80]
          Length = 1208

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 23/132 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D S A  LL+          + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHSLAVSLLLNAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEA 151
           C+ ++ Q   E+
Sbjct: 138 CQRMLTQNAFES 149


>gi|227892257|ref|ZP_04010062.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227865898|gb|EEJ73319.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 747

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  RV  L+     +P  +L +T T  AA EM  RV
Sbjct: 30 IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERV 77


>gi|190892554|ref|YP_001979096.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652]
 gi|190697833|gb|ACE91918.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652]
          Length = 832

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A PS +L +T T  AA EM  R+
Sbjct: 82  VLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 129


>gi|209550144|ref|YP_002282061.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535900|gb|ACI55835.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 825

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A PS +L +T T  AA EM  R+
Sbjct: 75  VLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 122


>gi|116328207|ref|YP_797927.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116330931|ref|YP_800649.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116120951|gb|ABJ78994.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116124620|gb|ABJ75891.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 730

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          T    + A AGSGKT ++  R+  LL+ N     +  LT T  AAAEM  RV  ++
Sbjct: 21 TGPVLILAGAGSGKTRVITHRIANLLV-NHGIDRICALTFTNKAAAEMVERVKNLV 75


>gi|315929648|gb|EFV08828.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
          jejuni 305]
          Length = 387

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ LA+        V A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIGRL 69


>gi|265764162|ref|ZP_06092730.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16]
 gi|263256770|gb|EEZ28116.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16]
          Length = 786

 Score = 39.7 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  ++  LL    +P  +L LT T  AA EM  R+
Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71


>gi|227536350|ref|ZP_03966399.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243726|gb|EEI93741.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 1075

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AGSGKT  L    L LL  + +    +L +T T  A  EM  R+L+++   ++   
Sbjct: 10  LKASAGSGKTFSLAVHYLTLLFHHEYKYREILAVTFTNKATEEMKTRILDVLKGLANNDP 69

Query: 95  EILSAEITKIQGKK-PNKSDM---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +    ++  K  P  S++    +A+ +   IL       V TI  F + +++ F  E
Sbjct: 70  SPGTDNYRQLLLKAYPQYSNIELQDRAQKIYRRILHDYSHFSVSTIDGFVQKVIRGFAFE 129

Query: 151 ANITSHFAI 159
             + + +++
Sbjct: 130 LGLDAAYSL 138


>gi|317502698|ref|ZP_07960810.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606]
 gi|315666184|gb|EFV05739.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606]
          Length = 761

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII----TAWS 90
           V A AGSGKT +L  ++  L+    + P ++L LT T  AA EM +R+  ++    T + 
Sbjct: 22  VIAGAGSGKTRVLTYKIAYLIDEKQYEPWSILALTFTNKAANEMRNRIARVVGQDRTRYL 81

Query: 91  HLS------DEILSAEITKIQ-GKKPNKSDMSKARHLLITILE 126
           ++         IL  E  K+   K+    D S +R LL +I++
Sbjct: 82  YMGTFHSIFSRILRVEAEKLGYSKQFTIYDESDSRSLLKSIIK 124


>gi|309810384|ref|ZP_07704218.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
 gi|308435624|gb|EFP59422.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
          Length = 1176

 Score = 39.7 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCL 68
           ++ ++    T  +  +   P     V A AGSGKT  +  RV+  L+AN    P  +L L
Sbjct: 33  ADALERYHHTPEQVAVIEAPLEPLLVVAGAGSGKTDTMASRVV-WLVANGLVRPQEILGL 91

Query: 69  THTKAAAAEMSHRV------LEIITAWSHLSD 94
           T T+ AA E++ RV      LE    WS   D
Sbjct: 92  TFTRKAAGELAERVNQRLRMLEASGLWSPPDD 123


>gi|291521009|emb|CBK79302.1| ATP-dependent DNA helicase PcrA [Coprococcus catus GD/7]
          Length = 768

 Score = 39.7 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV +I+
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIDECQVNPWNILAITFTNKAAGEMRERVDQIV 75


>gi|297626182|ref|YP_003687945.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium
          freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921947|emb|CBL56507.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium
          freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1118

 Score = 39.7 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 23 EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
          EQL + + P     V A AGSGKT ++  RV+ L+         +L LT T+ AAAE+S+
Sbjct: 23 EQLAVIAAPLEPGVVIAAAGSGKTTVMAARVVWLVGTGQVRADQVLGLTFTRKAAAELSN 82

Query: 81 RV 82
          RV
Sbjct: 83 RV 84


>gi|225850544|ref|YP_002730778.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1]
 gi|225645384|gb|ACO03570.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1]
          Length = 696

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 39/167 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++  +++ L+     P   +L +T T  AA+EM  RV            
Sbjct: 24  VLAGAGSGKTKVITHKIIFLIKELEIPLDRILAITFTNKAASEMKERVKN---------- 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                      + + E P    + T H+FC  +++        +
Sbjct: 74  --------------------------YLGLEEEPQW--ISTFHSFCVKVLRSEAESIGYS 105

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
             F I DEE SKK I++  K    +  L   E +K  F  I +  +D
Sbjct: 106 RDFIIYDEEDSKKAIKDVVKELNLNSDLYKPERVKHIFSNIKQSLDD 152


>gi|94265105|ref|ZP_01288871.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
 gi|93454435|gb|EAT04730.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
          Length = 1239

 Score = 39.7 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    LR +L    P   +L L+ T+AA AE+  R+   +        
Sbjct: 19  IEASAGTGKTWSITALYLRFILERQLPVEKILVLSFTEAATAELHERLRARLQGAVDAYQ 78

Query: 95  EILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             L+ E       +     +  + ++ + LL   L +     V TIH FC  ++QQ   E
Sbjct: 79  RFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALASIDQAAVLTIHGFCHRMLQQGAFE 138

Query: 151 ANI 153
           + +
Sbjct: 139 SGM 141


>gi|51598887|ref|YP_073075.1| exodeoxyribonuclease V, beta chain [Borrelia garinii PBi]
 gi|51573458|gb|AAU07483.1| exodeoxyribonuclease V, beta chain [Borrelia garinii PBi]
          Length = 1168

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86
          + A+AG+GKTHIL   V+ L+    +  + +L LT T  A  EM  R+L+ I
Sbjct: 16 IEASAGTGKTHILENLVINLIKTKLYSINEVLVLTFTNKATEEMHTRILKAI 67


>gi|327478847|gb|AEA82157.1| DNA-dependent helicase II [Pseudomonas stutzeri DSM 4166]
          Length = 729

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%)

Query: 36  VSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +LV R+  L  +  A   ++L +T T  AAAEM  R+ +++    H++ 
Sbjct: 29  VLAGAGSGKTRVLVHRIAWLHQVERASLHSILSVTFTNKAAAEMRQRIEQLL----HVN- 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                            P G+ V T H     +++    EA + 
Sbjct: 84  ---------------------------------PQGMWVGTFHGLAHRLLRAHWREAKLA 110

Query: 155 SHFAIADEEQSKKLIE 170
            +F I D +  ++L++
Sbjct: 111 ENFQILDSDDQQRLVK 126


>gi|328542978|ref|YP_004303087.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1]
 gi|326412724|gb|ADZ69787.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1]
          Length = 812

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L +  A PS +L +T T  AA EM  R+  +I
Sbjct: 66  VLAGAGTGKTRVLTTRIAHILSSGRAWPSQILAVTFTNKAAREMRERIGHLI 117


>gi|307566117|ref|ZP_07628575.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A]
 gi|307345305|gb|EFN90684.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A]
          Length = 1140

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSH-LS 93
           A+AGSGKT  L    + +L+   +P   + +L +T T  A +EM  R+L  +    H L+
Sbjct: 16  ASAGSGKTFTLTVEFISILV--KYPEDYNKMLAVTFTNKATSEMKLRILSQLYGIGHGLA 73

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E  K        +  + A ++L  +       +VQTI AF +A+++    E  +
Sbjct: 74  SSKSYLEKVKANTALTEATIRNNALYVLEKLTHEYHYFRVQTIDAFFQAVLRNLGKELGL 133

Query: 154 TSHFAI 159
           T++  +
Sbjct: 134 TANLRV 139


>gi|297571848|ref|YP_003697622.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932195|gb|ADH93003.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 836

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  R+  L+ A  A P  +L +T T  AA EM  R+
Sbjct: 73  VVAGAGSGKTRVLTTRIAYLIAAGKARPGEILAITFTNKAAKEMRERL 120


>gi|255067137|ref|ZP_05318992.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256]
 gi|255048505|gb|EET43969.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256]
          Length = 666

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AA EM  RV +++
Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 71


>gi|241759542|ref|ZP_04757645.1| DNA helicase II [Neisseria flavescens SK114]
 gi|241320099|gb|EER56460.1| DNA helicase II [Neisseria flavescens SK114]
          Length = 735

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +      +++ +T T 
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQTSVHSIMAVTFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|319638182|ref|ZP_07992945.1| ATP-dependent DNA helicase [Neisseria mucosa C102]
 gi|317400455|gb|EFV81113.1| ATP-dependent DNA helicase [Neisseria mucosa C102]
          Length = 666

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AA EM  RV +++
Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 71


>gi|311740890|ref|ZP_07714717.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304410|gb|EFQ80486.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 841

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 58/216 (26%)

Query: 10  HSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
            SE+ D +++  + Q L   +       + A AGSGKT +L +R+  L+     +P  +L
Sbjct: 34  QSESPDALTEGLNPQQLEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEIL 93

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AAAEM  RV  ++                      P    M            
Sbjct: 94  AITFTNKAAAEMKERVGGLV---------------------GPVAERMW----------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                 V T H+ C  I++Q   L   + ++F I D + +++L        L+ I  D  
Sbjct: 122 ------VSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRL--------LSMIAKDMQ 167

Query: 186 EELKKAFYEIL--EISNDEDIETLISDIISNRTALK 219
            +LKK    +L  +ISN ++      ++I  +TAL+
Sbjct: 168 LDLKKYTPRVLANQISNHKN------ELIGPKTALE 197


>gi|295676242|ref|YP_003604766.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002]
 gi|295436085|gb|ADG15255.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002]
          Length = 1243

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   L  +     
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87

Query: 92  LSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           + D+     I ++        N  +   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 88  MDDDAGDPFIRRLFETTLAPDNGIEREAALKVVRRALRTFDQAAIHTIHAFCQRALQE 145


>gi|226198600|ref|ZP_03794166.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929343|gb|EEH25364.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|150006034|ref|YP_001300778.1| putative helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934458|gb|ABR41156.1| putative helicase [Bacteroides vulgatus ATCC 8482]
          Length = 796

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 42/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P ++L LT T  AA EM  R+   +         
Sbjct: 25  VIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNKAAREMKERIARQVG-------- 76

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +AR+L +            T H+    I++        TS
Sbjct: 77  -------------------DQARYLWMG-----------TFHSIFSRILRCEAQAVGFTS 106

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +F I D   SK LI    KS +  + LD+
Sbjct: 107 NFTIYDSSDSKSLI----KSIVKEMQLDD 131


>gi|53718918|ref|YP_107904.1| putative exodeoxyribonuclease V subunit beta [Burkholderia
           pseudomallei K96243]
 gi|52209332|emb|CAH35277.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei K96243]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|53724197|ref|YP_103384.1| exodeoxyribonuclease V subunit beta [Burkholderia mallei ATCC
           23344]
 gi|121599132|ref|YP_992524.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei SAVP1]
 gi|124385391|ref|YP_001026675.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126449813|ref|YP_001080042.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|167004431|ref|ZP_02270189.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei PRL-20]
 gi|254178330|ref|ZP_04884985.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|254200341|ref|ZP_04906707.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei FMH]
 gi|254358920|ref|ZP_04975193.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei
           2002721280]
 gi|52427620|gb|AAU48213.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|121227942|gb|ABM50460.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei SAVP1]
 gi|124293411|gb|ABN02680.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126242683|gb|ABO05776.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|147749937|gb|EDK57011.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei FMH]
 gi|148028047|gb|EDK86068.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei
           2002721280]
 gi|160699369|gb|EDP89339.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|243060257|gb|EES42443.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei PRL-20]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|255262981|ref|ZP_05342323.1| DNA helicase II [Thalassiobium sp. R2A62]
 gi|255105316|gb|EET47990.1| DNA helicase II [Thalassiobium sp. R2A62]
          Length = 797

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ L+   NA P+ +L +T T  AA EM  RV
Sbjct: 52 AGAGTGKTKALTSRIVHLMSTGNARPNEILAVTFTNKAAREMKIRV 97


>gi|164687187|ref|ZP_02211215.1| hypothetical protein CLOBAR_00828 [Clostridium bartlettii DSM
           16795]
 gi|164603611|gb|EDQ97076.1| hypothetical protein CLOBAR_00828 [Clostridium bartlettii DSM
           16795]
          Length = 739

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 64/223 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A  G+GKT I+   V +LL  N +    +L LT+  +AA     R+ +I+        
Sbjct: 26  VPAVPGAGKTFIVTNLVAKLLEENKNEKGKILILTYMNSAANNFKGRIKKILEEKG---- 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                         +E+  G +V TIH+    I+++ P    ++
Sbjct: 82  ------------------------------IESTNGFEVMTIHSLAAKIIKEKPEAMMLS 111

Query: 155 SHFAIADEEQSKKL--------------------IEEAKKSTLASIMLDNNEELKKAFYE 194
             F IAD+ Q   +                    ++E K      I L   E  +  F+E
Sbjct: 112 EDFNIADDFQKTMMLNDCINTFRASGGETAFRFFLKEQKNQMWYDIQL---EAWENGFFE 168

Query: 195 ILEIS------NDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
           ++  S      ND   ++L ++ +SN+  LK+I F ++   +R
Sbjct: 169 LVSKSISNLKYNDISPQSLEANTLSNKGILKIISFIYTEYDKR 211


>gi|163788705|ref|ZP_02183150.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1]
 gi|159875942|gb|EDP70001.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1]
          Length = 776

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+        +L LT T  AA EM  R+ +I+
Sbjct: 25 IIAGAGSGKTRVLTYRIAYLMAQGVDAFNILALTFTNKAAKEMKGRIADIV 75


>gi|72382484|ref|YP_291839.1| DNA helicase/exodeoxyribonuclease V subunit beta [Prochlorococcus
           marinus str. NATL2A]
 gi|72002334|gb|AAZ58136.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus
           marinus str. NATL2A]
          Length = 1261

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 24/132 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  L   VLRLL    +  + +L ++ T+A A+E+  R++E +     L+ 
Sbjct: 21  IEASAGTGKTFSLSHLVLRLLTEKEYSINEILVVSFTEATASEIKARIIERLI----LAL 76

Query: 95  EILSAEITKIQGKKPNKSD-----------MSKAR-----HLLITILETPGGLKVQTIHA 138
           +I+ +  T +   KP K D            SK +      LL+  LE      + TIH 
Sbjct: 77  KIIESINTNV---KPYKIDNVLNEWVDLNITSKEKALYIASLLLEALERIDNADITTIHG 133

Query: 139 FCEAIMQQFPLE 150
           FC   +++  +E
Sbjct: 134 FCSKTLRREAIE 145


>gi|331270358|ref|YP_004396850.1| UvrD/REP helicase [Clostridium botulinum BKT015925]
 gi|329126908|gb|AEB76853.1| UvrD/REP helicase [Clostridium botulinum BKT015925]
          Length = 761

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71
          +DL S    EQ  A+        V A AGSGKT +L  R+  ++     P   +L +T T
Sbjct: 1  MDLKSLLNEEQYKAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60

Query: 72 KAAAAEMSHRVLEIIT 87
            AA EM  R+ ++++
Sbjct: 61 NKAAGEMKDRIKKLVS 76


>gi|307706581|ref|ZP_07643388.1| recombination helicase AddA [Streptococcus mitis SK321]
 gi|307618036|gb|EFN97196.1| recombination helicase AddA [Streptococcus mitis SK321]
          Length = 1216

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D 
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQETDG 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|237811673|ref|YP_002896124.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|237504018|gb|ACQ96336.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           MSHR346]
          Length = 1260

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|261365097|ref|ZP_05977980.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996]
 gi|288566523|gb|EFC88083.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996]
          Length = 666

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AA EM  RV +++
Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 71


>gi|190571383|ref|YP_001975741.1| helicase II, UvrD [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|213018782|ref|ZP_03334590.1| helicase II, UvrD [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
 gi|190357655|emb|CAQ55099.1| helicase II, UvrD [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|212995733|gb|EEB56373.1| helicase II, UvrD [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
          Length = 637

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          D +S    EQ LA ++      + A AG+GKT  +  R+  ++   +A+   +L +T T 
Sbjct: 3  DYLSLLNPEQQLAVTNINGPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAVTFTN 62

Query: 73 AAAAEMSHRVLEI 85
           AA EM  RVLE+
Sbjct: 63 KAANEMVSRVLEL 75


>gi|118497381|ref|YP_898431.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella tularensis
           subsp. novicida U112]
 gi|195536071|ref|ZP_03079078.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|254372746|ref|ZP_04988235.1| ATP-dependent DNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|118423287|gb|ABK89677.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella novicida
           U112]
 gi|151570473|gb|EDN36127.1| ATP-dependent DNA helicase [Francisella novicida GA99-3549]
 gi|194372548|gb|EDX27259.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 671

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 38/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV            
Sbjct: 22  VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV------------ 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                           KS + K         E   GL + T H+   +I+++  +E    
Sbjct: 70  ----------------KSRLDK---------EKSKGLMISTFHSLGLSILKKHFIELGYK 104

Query: 155 SHFAIADEEQSKKLI 169
            +F + D   S  LI
Sbjct: 105 KNFTLFDSHDSLALI 119


>gi|116050720|ref|YP_790459.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585941|gb|ABJ11956.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1707

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 20   TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78
            T  + ++A D   +  V A  GSGKT ++V R+  LL     P+T ++ LT  + AA E+
Sbjct: 1100 TTQKLIVADDDDINRLVLAGPGSGKTRVIVHRIAYLLRVRRVPATSIVALTFNRHAANEI 1159

Query: 79   SHRVLEIITA 88
              R+L ++ A
Sbjct: 1160 RKRLLALVGA 1169


>gi|312623315|ref|YP_004024928.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203782|gb|ADQ47109.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 954

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 30/128 (23%)

Query: 37  SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           SA+AG GKT  +    + ++ +  A P+ ++C+T+T+ AA E+  R   II+       +
Sbjct: 8   SASAGCGKTESIANLYIDIINSEKATPNEIVCITYTEKAAKELKSR---IISKAKQKGLD 64

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L+  I+KIQ                           ++TIH+FC  +++ +   A + +
Sbjct: 65  LLT--ISKIQNS------------------------HIKTIHSFCMYLLRFYWAWARVDA 98

Query: 156 HFAIADEE 163
           +F I  ++
Sbjct: 99  NFKIVPDQ 106


>gi|291456654|ref|ZP_06596044.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213]
 gi|291381931|gb|EFE89449.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213]
          Length = 901

 Score = 39.7 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L +R+  +L    A PS +L +T T  AA EM  R+  +I
Sbjct: 46 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAVEMRERLGSLI 97


>gi|225868711|ref|YP_002744659.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp.
           zooepidemicus]
 gi|251764568|sp|C0MGY6|ADDA_STRS7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|225701987|emb|CAW99551.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi
           subsp. zooepidemicus]
          Length = 1214

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 21/136 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLSD 94
           VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+  R+ + + TA +   D
Sbjct: 46  VSASAGSGKTFVMVERILDKILRGIPVDRLFISTFTVKAATELIERIEKKLHTAIAETQD 105

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L A +   Q +  +++D+                    T+ AF + ++ Q      I+
Sbjct: 106 YQLKAYLND-QLQALSQADIG-------------------TMDAFAQKLVHQHGYVLGIS 145

Query: 155 SHFAIADEEQSKKLIE 170
            HF I  ++  + +++
Sbjct: 146 PHFRIIQDKAEQDILK 161


>gi|254458799|ref|ZP_05072223.1| UvrD/REP helicase subfamily [Campylobacterales bacterium GD 1]
 gi|207084565|gb|EDZ61853.1| UvrD/REP helicase subfamily [Campylobacterales bacterium GD 1]
          Length = 682

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          A AGSGKT  +V R+  L+     P S  L LT T  AA EM  R L++I   S+
Sbjct: 27 AGAGSGKTTTIVSRLAYLVEVLGIPASNTLTLTFTNKAAKEMRERALDMIKDISY 81


>gi|298368953|ref|ZP_06980271.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str.
          F0314]
 gi|298282956|gb|EFI24443.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str.
          F0314]
          Length = 688

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AA EM  RV +++
Sbjct: 38 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 89


>gi|255348990|ref|ZP_05380997.1| DNA helicase [Chlamydia trachomatis 70]
 gi|255503529|ref|ZP_05381919.1| DNA helicase [Chlamydia trachomatis 70s]
 gi|255507207|ref|ZP_05382846.1| DNA helicase [Chlamydia trachomatis D(s)2923]
 gi|296435215|gb|ADH17393.1| DNA helicase [Chlamydia trachomatis E/150]
 gi|296438934|gb|ADH21087.1| DNA helicase [Chlamydia trachomatis E/11023]
          Length = 634

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2  LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61

Query: 74 AAAEMSHRV 82
          AA E+  RV
Sbjct: 62 AANELKERV 70


>gi|94263170|ref|ZP_01286988.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
 gi|93456541|gb|EAT06655.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
          Length = 1239

 Score = 39.7 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    LR +L    P   +L L+ T+AA AE+  R+   +        
Sbjct: 19  IEASAGTGKTWSITALYLRFILERQLPVEKILVLSFTEAATAELHERLRARLQGAVDAYQ 78

Query: 95  EILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             L+ E       +     +  + ++ + LL   L +     V TIH FC  ++QQ   E
Sbjct: 79  RFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALASIDQAAVLTIHGFCHRMLQQGAFE 138

Query: 151 ANI 153
           + +
Sbjct: 139 SGM 141


>gi|85708952|ref|ZP_01040018.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85690486|gb|EAQ30489.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 771

 Score = 39.7 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R+  L+    A PS +LC+T T  AA EM  RV
Sbjct: 44 AGAGTGKTAALTSRLAHLVATRRAWPSQILCVTFTNKAAREMRERV 89


>gi|323484921|ref|ZP_08090276.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
 gi|323401802|gb|EGA94145.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
          Length = 813

 Score = 39.7 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     +P  ++ +T T  AAAEM  RV +I+
Sbjct: 24 VLAGAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEMRERVDKIV 75


>gi|302669040|ref|YP_003832865.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302397380|gb|ADL36283.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 643

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A AGSGKT  +  R+  ++ A      +L +T T  AA EM  R L +      L D++L
Sbjct: 27  AGAGSGKTRTITYRIAYMIDAGIDTRNILAITFTNKAAKEMKERALAL------LDDKVL 80

Query: 98  SAEIT 102
              +T
Sbjct: 81  PPTLT 85


>gi|300689860|ref|YP_003750855.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
 gi|299076920|emb|CBJ49533.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
          Length = 705

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++  
Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRNIAAVTFTNKAAKEMQERVAKLMDG 79


>gi|302407938|ref|XP_003001804.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum
          VaMs.102]
 gi|261359525|gb|EEY21953.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum
          VaMs.102]
          Length = 999

 Score = 39.7 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
          +++ +   + +S PT +  + A  GSGKTH L  RV+ LL  A  HP+ ++  T T  +A
Sbjct: 18 LNKAQCRAVTSSAPTVA--ILAGPGSGKTHTLTSRVVWLLENAGYHPADIVVATFTVKSA 75

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 76 REMKERI 82


>gi|220920723|ref|YP_002496024.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060]
 gi|219945329|gb|ACL55721.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 22  SEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79
           +EQ  A + T     V A AG+GKT +L  R+  L+ +  A P  +L +T T  AA EM 
Sbjct: 74  AEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIAIGRARPFDILAVTFTNKAAREMK 133

Query: 80  HRVLEII 86
            R+  +I
Sbjct: 134 ERIGALI 140


>gi|328951182|ref|YP_004368517.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
 gi|328451506|gb|AEB12407.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
          Length = 900

 Score = 39.7 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A+AG+GKT  LV+R L LL A+  P  +  +T T+AAAA++  R   I   +S L  E  
Sbjct: 6   ASAGTGKTTALVRRYLELLEAHP-PHRVAAVTFTRAAAAQLKSR---IYAGFSVLERE-- 59

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                   G  P    + +   L   +L  P    + TIH F   +++
Sbjct: 60  ----GAYYGYVPPPERLPRLFSLKEAVLAAP----IHTIHGFFAELLR 99


>gi|310820608|ref|YP_003952966.1| ATP-dependent DNA helicase, uvrd/rep family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393680|gb|ADO71139.1| ATP-dependent DNA helicase, UvrD/REP family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1213

 Score = 39.7 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 44  KTHILVQRVLRLLLANAH------PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS--DE 95
           KT+ LV  VL LL           P+ L  LT T  AAAEM  R    + A +     + 
Sbjct: 23  KTYSLVTMVLHLLAGAREAAPALRPAKLCMLTFTDKAAAEMRARTRSRLDALAQAEAKEP 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L A + ++    P +      R       E  G   + T H+ C  ++++ P    I  
Sbjct: 83  ELRASLERLDRPFPAQDAWRAMR-------EELGSATLGTFHSLCGQLLRRAPPGLGIDP 135

Query: 156 HFAIADEEQSKKLIEE 171
            F + DE ++  L+++
Sbjct: 136 SFEVLDELEASNLVQD 151


>gi|300173630|ref|YP_003772796.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG
          18811]
 gi|299888009|emb|CBL91977.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG
          18811]
          Length = 747

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +LIS    +Q  A   T+    + A AGSGKT +L  R+  L+   N  P  +L +T T 
Sbjct: 5  ELISGMNDKQAEAVQITQGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTN 64

Query: 73 AAAAEMSHRVLEIIT 87
           AA EM  R+  +++
Sbjct: 65 KAAKEMRERISSLLS 79


>gi|289525651|emb|CBJ15132.1| DNA helicase [Chlamydia trachomatis Sweden2]
          Length = 634

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2  LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61

Query: 74 AAAEMSHRV 82
          AA E+  RV
Sbjct: 62 AANELKERV 70


>gi|315156747|gb|EFU00764.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0043]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|212638095|ref|YP_002314615.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1]
 gi|212559575|gb|ACJ32630.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1]
          Length = 726

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV  I+
Sbjct: 34 IMAGAGSGKTRVLTHRIAYLMAEKGVAPWNILAITFTNKAAREMKERVERIV 85


>gi|154482468|ref|ZP_02024916.1| hypothetical protein EUBVEN_00135 [Eubacterium ventriosum ATCC
          27560]
 gi|149736669|gb|EDM52555.1| hypothetical protein EUBVEN_00135 [Eubacterium ventriosum ATCC
          27560]
          Length = 609

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
          A V A  GSGKT ++  R+  L+  A   P  +L +T TKAAA  M  R
Sbjct: 17 AMVLAGPGSGKTTVITHRIKNLIEKAEVRPENILVVTFTKAAAISMQKR 65


>gi|254188292|ref|ZP_04894803.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254260700|ref|ZP_04951754.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1710a]
 gi|157935971|gb|EDO91641.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254219389|gb|EET08773.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1710a]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDGGGDPFIARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|325846585|ref|ZP_08169500.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481343|gb|EGC84384.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 729

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L   +  L+     +P+ +L +T T  AA EM  R+       S+L +
Sbjct: 23  VVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFTNKAANEMKERI-------SNLLN 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E +S                    HL I            T H+ C  I++    +    
Sbjct: 76  EDVS--------------------HLWIG-----------TFHSICARILRMNINKIGYD 104

Query: 155 SHFAIADEEQSKKLIEE 171
           ++F I D    K L++E
Sbjct: 105 NNFTIYDTNDQKTLVKE 121


>gi|307825819|ref|ZP_07656035.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum
           SV96]
 gi|307733127|gb|EFO03988.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum
           SV96]
          Length = 1185

 Score = 39.7 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 14/128 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT+ +   VLR ++    P   LL +T TKAA  E+  RV   +       D
Sbjct: 20  IEASAGTGKTYAIAMLVLRFVVEQGIPIEKLLVVTFTKAATEELKDRVRSRLAEARRALD 79

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                      E +   I     K   + ++ K R L + +L+      + TIH FC+ +
Sbjct: 80  SLDRQAQGRHTENIDDNIVDWLAKLDIEPELVKQR-LQMALLDIDQA-GIFTIHGFCQRV 137

Query: 144 MQQFPLEA 151
           +++  LE+
Sbjct: 138 LREHALES 145


>gi|124024248|ref|YP_001018555.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123964534|gb|ABM79290.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303]
          Length = 802

 Score = 39.7 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+ A+ A P+ +L +T T  AA EM  R LE++ A
Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGAHGADPAQILAVTFTNKAAREMKDR-LELLLA 76


>gi|221234533|ref|YP_002516969.1| DNA helicase II [Caulobacter crescentus NA1000]
 gi|220963705|gb|ACL95061.1| DNA helicase II [Caulobacter crescentus NA1000]
          Length = 811

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P  +L +T T  AA EM  R+  II
Sbjct: 66  VLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNKAAREMRERITHII 117


>gi|218194490|gb|EEC76917.1| hypothetical protein OsI_15164 [Oryza sativa Indica Group]
          Length = 684

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM+ R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRQEAEPGQILLLAFGRQAAGEMNDRIKE 263


>gi|196018414|ref|XP_002118799.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens]
 gi|190578180|gb|EDV18715.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens]
          Length = 863

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E S  + ++S+TK +   AS     A   A AG+GKT +L  RV+ L+    A PS +L 
Sbjct: 380 EFSNFVGILSKTKVKLDQASKAIGDAEYKAGAGTGKTKVLTSRVIHLINKGFAFPSQILA 439

Query: 68  LTHT 71
           +T T
Sbjct: 440 VTFT 443


>gi|87123150|ref|ZP_01079001.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917]
 gi|86168870|gb|EAQ70126.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917]
          Length = 796

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 22/146 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  + A P+ +L +T T  AA EM  R LE+         
Sbjct: 24  VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEL--------- 73

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA- 151
            +L+  + + Q  +P +     + R L   I  E    L + T HA   A M +F ++  
Sbjct: 74  -LLAQRLAQSQFGQPWSTLPPVEQRQLRSRIYREVTKDLWIGTFHALF-ARMLRFDIDKF 131

Query: 152 ------NITSHFAIADEEQSKKLIEE 171
                 + T  F+I DE  ++ L++E
Sbjct: 132 KDAEGLSWTKQFSIYDETDAQSLVKE 157


>gi|294789337|ref|ZP_06754575.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453]
 gi|294482762|gb|EFG30451.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453]
          Length = 663

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 38/138 (27%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +V A AGSGKT ++ +++  L+  A   P  +  +T T  AA EM  R+           
Sbjct: 19  FVLAGAGSGKTRVITEKIAYLITQAGYKPHHIAAITFTNKAAKEMQERI----------- 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
               S  + K Q +                      GL V T HA    I+++     N 
Sbjct: 68  ----SHRLGKNQTR----------------------GLIVSTFHALGMRILREEATNLNY 101

Query: 154 TSHFAIADEEQSKKLIEE 171
             +F+I D   S KLI E
Sbjct: 102 KKNFSILDSSDSAKLIGE 119


>gi|229548667|ref|ZP_04437392.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200]
 gi|307269775|ref|ZP_07551105.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248]
 gi|312953106|ref|ZP_07771955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102]
 gi|229306183|gb|EEN72179.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200]
 gi|306513885|gb|EFM82487.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248]
 gi|310628940|gb|EFQ12223.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102]
 gi|315036100|gb|EFT48032.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0027]
 gi|315153983|gb|EFT97999.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0031]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|217423556|ref|ZP_03455057.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           576]
 gi|217393414|gb|EEC33435.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           576]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|212696136|ref|ZP_03304264.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676765|gb|EEB36372.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 730

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L   +  L+     +P+ +L +T T  AA EM  R+       S+L +
Sbjct: 24  VVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFTNKAANEMKERI-------SNLLN 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E +S                    HL I            T H+ C  I++    +    
Sbjct: 77  EDVS--------------------HLWIG-----------TFHSICARILRMNINKIGYD 105

Query: 155 SHFAIADEEQSKKLIEE 171
           ++F I D    K L++E
Sbjct: 106 NNFTIYDTNDQKTLVKE 122


>gi|254418189|ref|ZP_05031913.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
 gi|196184366|gb|EDX79342.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
          Length = 785

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          D +     EQ  A + T     V A AG+GKT +L  R+  +L    A P  LL +T T 
Sbjct: 25 DYLEGLNPEQREAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVTFTN 84

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 85 KAAREMRERITHLI 98


>gi|254298121|ref|ZP_04965574.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           406e]
 gi|157807178|gb|EDO84348.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           406e]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|126441299|ref|YP_001058429.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           668]
 gi|126220792|gb|ABN84298.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           668]
          Length = 1263

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P ++   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|148989180|ref|ZP_01820570.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
 gi|147925403|gb|EDK76481.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
          Length = 141

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+ + I+     +D+
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGIEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104

Query: 96  I 96
           +
Sbjct: 105 V 105


>gi|310827141|ref|YP_003959498.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612]
 gi|308738875|gb|ADO36535.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612]
          Length = 1065

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
           H    +L++  + E ++ +   R+  V A  G+GKT  LV R+L LL      P+ +  +
Sbjct: 456 HPIVTELLNAEQQEAVITA--RRAIAVIAGPGTGKTKTLVSRILHLLNERRVKPTEITAV 513

Query: 69  THTKAAAAEMSHRVLEIITAWS 90
           T T  AAAEM  R+ +++   S
Sbjct: 514 TFTNKAAAEMRERLEKVLGKRS 535


>gi|307289586|ref|ZP_07569530.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109]
 gi|306499400|gb|EFM68773.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109]
 gi|315164585|gb|EFU08602.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1302]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|295426521|ref|ZP_06819171.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM
          11664]
 gi|295063889|gb|EFG54847.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM
          11664]
          Length = 749

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+   N +P  +L +T T  AA EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEKNNVNPWNILAITFTNKAANEMRER 73


>gi|118380926|ref|XP_001023625.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89305392|gb|EAS03380.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1027

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 1  MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
          M+  N+FQ   E + ++          SD  ++  + A AGSGKT  L+ RV  L+  N 
Sbjct: 1  MLNKNNFQLSEEQLKIVQ---------SDIYQNQKIGACAGSGKTTTLIYRVKYLIDNNI 51

Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEII 86
           P  ++  T    AA  +  +  +++
Sbjct: 52 EPQKIILTTFNVEAAQNLKKKAEQVL 77


>gi|16125775|ref|NP_420339.1| DNA helicase II [Caulobacter crescentus CB15]
 gi|13422909|gb|AAK23507.1| DNA helicase II [Caulobacter crescentus CB15]
          Length = 805

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P  +L +T T  AA EM  R+  II
Sbjct: 60  VLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNKAAREMRERITHII 111


>gi|328754850|gb|EGF68466.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|327329920|gb|EGE71674.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL097PA1]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|315109404|gb|EFT81380.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|314967655|gb|EFT11754.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|313809680|gb|EFS47414.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|313792361|gb|EFS40460.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1]
 gi|313801691|gb|EFS42931.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2]
 gi|314962480|gb|EFT06580.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1]
 gi|315077696|gb|EFT49747.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2]
 gi|327453453|gb|EGF00108.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|313771951|gb|EFS37917.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|294669243|ref|ZP_06734323.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291308875|gb|EFE50118.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 623

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L++   + P T+  +T T  AA EM  RV +++
Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 71


>gi|282853719|ref|ZP_06263056.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|282583172|gb|EFB88552.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|314983238|gb|EFT27330.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3]
 gi|315090100|gb|EFT62076.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4]
          Length = 1071

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|239993134|ref|ZP_04713658.1| UvrD/REP helicase [Alteromonas macleodii ATCC 27126]
          Length = 701

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%)

Query: 5  NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
          N  Q+ +    L S    E  L+ +      + A AG+GKT+ L  +  +L+L    P  
Sbjct: 8  NPQQQEAVNYGLSSVGAGETELSDETHHPLLIIAGAGTGKTNTLAHKTAQLILHGVAPER 67

Query: 65 LLCLTHTKAAAAEMSHRVLEII 86
          +L +T  + A++E+S R   II
Sbjct: 68 ILLMTFARRASSELSSRANRII 89


>gi|256420067|ref|YP_003120720.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
 gi|256034975|gb|ACU58519.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
          Length = 783

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+        +L LT T  AA EM  RV +I+
Sbjct: 26 IVAGAGSGKTKVLTTRIAHLMRNGVDAFNILSLTFTNKAAREMKERVEKIL 76


>gi|50842799|ref|YP_056026.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|289425489|ref|ZP_06427266.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|295130853|ref|YP_003581516.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|50840401|gb|AAT83068.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|289154467|gb|EFD03155.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|291376029|gb|ADD99883.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|313764135|gb|EFS35499.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1]
 gi|313819377|gb|EFS57091.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2]
 gi|313820642|gb|EFS58356.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1]
 gi|313822553|gb|EFS60267.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2]
 gi|313827479|gb|EFS65193.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2]
 gi|313830016|gb|EFS67730.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1]
 gi|313832980|gb|EFS70694.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1]
 gi|313838405|gb|EFS76119.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1]
 gi|314914865|gb|EFS78696.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4]
 gi|314918020|gb|EFS81851.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1]
 gi|314920396|gb|EFS84227.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3]
 gi|314924885|gb|EFS88716.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3]
 gi|314929976|gb|EFS93807.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1]
 gi|314956488|gb|EFT00776.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1]
 gi|314957332|gb|EFT01435.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1]
 gi|314960467|gb|EFT04569.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2]
 gi|314972837|gb|EFT16934.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1]
 gi|314975741|gb|EFT19836.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1]
 gi|314983661|gb|EFT27753.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1]
 gi|314986296|gb|EFT30388.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2]
 gi|314989617|gb|EFT33708.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3]
 gi|315080858|gb|EFT52834.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1]
 gi|315084654|gb|EFT56630.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2]
 gi|315085339|gb|EFT57315.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3]
 gi|315095786|gb|EFT67762.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1]
 gi|315101553|gb|EFT73529.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1]
 gi|315105905|gb|EFT77881.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
 gi|327329833|gb|EGE71588.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA2]
 gi|327442647|gb|EGE89301.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1]
 gi|327443715|gb|EGE90369.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2]
 gi|327452206|gb|EGE98860.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3]
 gi|327452695|gb|EGE99349.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2]
 gi|328752851|gb|EGF66467.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2]
 gi|328753882|gb|EGF67498.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1]
 gi|328761486|gb|EGF75010.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL099PA1]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|25027350|ref|NP_737404.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
          YS-314]
 gi|23492631|dbj|BAC17604.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
          YS-314]
          Length = 694

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          I+L    + +++ A+ P     + A AG+GKT  +  R+  L+      P+ +L +T T 
Sbjct: 19 INLQDLDEDQRIAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTS 78

Query: 73 AAAAEMSHRV 82
           AA EM HR+
Sbjct: 79 RAAGEMRHRL 88


>gi|314978138|gb|EFT22232.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2]
 gi|315088601|gb|EFT60577.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|313812634|gb|EFS50348.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|189424989|ref|YP_001952166.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189421248|gb|ACD95646.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 1082

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           V+A  G+GKT  LV R+ RLL   A P  ++ +T T   A EM  R+
Sbjct: 483 VAAGPGTGKTFTLVSRLQRLLDQGADPGRVVAITFTTRTAEEMRERL 529


>gi|270308367|ref|YP_003330425.1| UvrD/REP helicase [Dehalococcoides sp. VS]
 gi|270154259|gb|ACZ62097.1| UvrD/REP helicase [Dehalococcoides sp. VS]
          Length = 738

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 43/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A  GSGKT ++  R+  L+ +   +P  ++ +T T  AA EM  R             
Sbjct: 25  ILAGPGSGKTRVITHRIAYLIKIVGINPHRIMAVTFTNKAAREMETR------------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                    L +      G L + T HA C  I++Q  L   + 
Sbjct: 72  -------------------------LNLLAPSAAGRLTMGTFHAICARILRQDGLPLGVP 106

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           + F I D++  + LI++A    +A + LD
Sbjct: 107 ADFVIYDDDDQQSLIKQA----MAELELD 131


>gi|238796709|ref|ZP_04640215.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969]
 gi|238719440|gb|EEQ11250.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969]
          Length = 1136

 Score = 39.7 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           + A  G+GKT  LV RV  LL     P  +L LT +  AA EM+ R+  + T
Sbjct: 214 LEAGPGTGKTQTLVGRVKGLLADGVDPRKILLLTFSNKAAGEMAERIARVDT 265


>gi|327534311|gb|AEA93145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis OG1RF]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|312900317|ref|ZP_07759628.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470]
 gi|311292505|gb|EFQ71061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470]
 gi|315170713|gb|EFU14730.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1342]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|313106395|ref|ZP_07792629.1| putative helicase [Pseudomonas aeruginosa 39016]
 gi|310879131|gb|EFQ37725.1| putative helicase [Pseudomonas aeruginosa 39016]
          Length = 646

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 10  HSETIDLISQTKSEQ---LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
            + T+ ++S    EQ   +L   P   A + A AGSGK+  LV RV+ +L      P  L
Sbjct: 100 QAATLGVVSPPSEEQWAMILCRQPL--ARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRL 157

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
             ++ T A+ A++  ++L ++  W +  D
Sbjct: 158 TVISFTNASCAQLREQLLRVLAHWQYPFD 186


>gi|255971180|ref|ZP_05421766.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1]
 gi|256761491|ref|ZP_05502071.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3]
 gi|255962198|gb|EET94674.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1]
 gi|256682742|gb|EEU22437.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3]
 gi|323479917|gb|ADX79356.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis 62]
          Length = 746

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 22  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 70  ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 102

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 103 NRNFTIIDPSEQKTLMK 119


>gi|227486911|ref|ZP_03917227.1| superfamily I ATP-dependent helicase [Corynebacterium
          glucuronolyticum ATCC 51867]
 gi|227092985|gb|EEI28297.1| superfamily I ATP-dependent helicase [Corynebacterium
          glucuronolyticum ATCC 51867]
          Length = 686

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
          E+  L      +++ A+ P     + A AG+GKT  +  R+  L+   A  P  +L +T 
Sbjct: 4  ESFSLEDLDPDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLINTGAVSPQRVLAVTF 63

Query: 71 TKAAAAEMSHRV 82
          TK AA EM  R+
Sbjct: 64 TKRAAGEMRDRL 75


>gi|225174552|ref|ZP_03728551.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus
            AHT 1]
 gi|225170337|gb|EEG79132.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus
            AHT 1]
          Length = 1609

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 18/176 (10%)

Query: 36   VSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V A  GSGKT +LV ++  L L+ +     LL LT ++AAA E   R+ ++I   ++  +
Sbjct: 1065 VLAGPGSGKTRVLVHKLASLILMEDVKHEQLLMLTFSRAAATEFKKRLTQLIGGAANFIE 1124

Query: 95   -EILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAFCEA-------- 142
             +   +    + G+  N     D+ KA    I   E   G   +T+    EA        
Sbjct: 1125 IKTFHSYCFDLMGRVGNAEKFDDVVKATIEKIRNGEVEPGRITKTVLVLDEAQDMDQDVF 1184

Query: 143  -IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
             ++Q    +       A+ D++Q+      +    L   M++N    + A YE+LE
Sbjct: 1185 NLVQTLMAQNEDMRVIAVGDDDQNIYEFRGSSSKYLREFMVEN----QAAHYELLE 1236


>gi|218887057|ref|YP_002436378.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758011|gb|ACL08910.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 789

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 27/46 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT  +V R+  L+      S +L LT T+ +A EM HR
Sbjct: 25 VIAGAGSGKTRTIVYRLANLVEQGVPASAILLLTFTRKSAREMLHR 70


>gi|313816227|gb|EFS53941.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1]
 gi|315098848|gb|EFT70824.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|307944882|ref|ZP_07660219.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4]
 gi|307771806|gb|EFO31030.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4]
          Length = 801

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L   NA P  +L +T T  AA EM  R+
Sbjct: 61  VLAGAGTGKTRVLTTRIAHILATGNARPFEVLAVTFTNKAAREMKERI 108


>gi|307284517|ref|ZP_07564679.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860]
 gi|306503194|gb|EFM72448.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|289428125|ref|ZP_06429828.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|289158725|gb|EFD06926.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|313807183|gb|EFS45676.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2]
 gi|313825512|gb|EFS63226.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1]
 gi|327327125|gb|EGE68904.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA3]
 gi|327443750|gb|EGE90404.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2]
          Length = 1072

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S R+   +T 
Sbjct: 34  PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93

Query: 89  WSHLSDE 95
              L+ E
Sbjct: 94  VGLLTSE 100


>gi|3024353|sp|P56255|PCRA_BACST RecName: Full=ATP-dependent DNA helicase pcrA
 gi|4930230|pdb|3PJR|A Chain A, Helicase Substrate Complex
 gi|15988533|pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
 gi|157833507|pdb|1PJR|A Chain A, Structure Of Dna Helicase
          Length = 724

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  ++  
Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82


>gi|329117216|ref|ZP_08245933.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD
          2020]
 gi|326907621|gb|EGE54535.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD
          2020]
          Length = 1212

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++  VSA+AGSGKT ++V+R++  LL       +   T T  AA E+  R+
Sbjct: 41 QNVLVSASAGSGKTFVMVERIIDKLLRGVAIEEMFISTFTVKAATELKERL 91


>gi|315146962|gb|EFT90978.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4244]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|302340231|ref|YP_003805437.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637416|gb|ADK82843.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 728

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 49/167 (29%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72
           +D +++ + E +L   P  S  + A AGSGKT ++  ++  ++    + P ++L +T T 
Sbjct: 10  LDALNRAQQEAVLYEGP--SLLILAGAGSGKTRVITSKIAYMIDRLGYDPYSILAVTFTN 67

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                                         P G K
Sbjct: 68  KAAGEMRQRVAAMV-----------------------------------------PDGAK 86

Query: 133 V--QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL---IEEAKK 174
           V  +T H+F   + ++     ++  +F I D+E S  L   +EE KK
Sbjct: 87  VMIRTFHSFGAWLCRRHAKLLDLDPNFTIYDDEDSLTLLHALEEGKK 133


>gi|295394601|ref|ZP_06804820.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294972494|gb|EFG48350.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 1103

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPS 63
          S ++ +E +DL   T  +  +           A AGSGKT ++ QRVL  L+AN    P 
Sbjct: 4  SAKQIAERLDLPEPTDEQCAIIEADLTPGITIAGAGSGKTTVVSQRVL-YLVANGLVEPQ 62

Query: 64 TLLCLTHTKAAAAEMSHRV 82
           ++ LT T  AA EMS ++
Sbjct: 63 QIIGLTFTNKAAGEMSDKI 81


>gi|294778328|ref|ZP_06743753.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510]
 gi|294447835|gb|EFG16410.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510]
          Length = 796

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 42/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AGSGKT +L  ++  LL     P ++L LT T  AA EM  R+   +         
Sbjct: 25  VIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNKAAREMKERIARQVG-------- 76

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +AR+L +            T H+    I++        TS
Sbjct: 77  -------------------DQARYLWMG-----------TFHSIFSRILRCESQSIGFTS 106

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +F I D   SK LI    KS +  + LD+
Sbjct: 107 NFTIYDSSDSKSLI----KSIVKEMQLDD 131


>gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 894

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 24/47 (51%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A  G GKTHIL +R+            +LCLT T  AA EM  R+
Sbjct: 24 VLAPPGCGKTHILAERIKNARAEGVAFKDMLCLTFTNRAAREMESRI 70


>gi|259047692|ref|ZP_05738093.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC
          49175]
 gi|259035883|gb|EEW37138.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC
          49175]
          Length = 773

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  +L      P  +L +T T  AA+EM  RV  ++
Sbjct: 28 VMAGAGSGKTRVLTHRMAYILAEEEVQPWNILAITFTNKAASEMKERVSALV 79


>gi|255973804|ref|ZP_05424390.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2]
 gi|255966676|gb|EET97298.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2]
          Length = 746

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 22  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 70  ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 102

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 103 NRNFTIIDPSEQKTLMK 119


>gi|227517687|ref|ZP_03947736.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104]
 gi|229546558|ref|ZP_04435283.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322]
 gi|293385045|ref|ZP_06630879.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712]
 gi|293389316|ref|ZP_06633777.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613]
 gi|307272535|ref|ZP_07553788.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855]
 gi|307274690|ref|ZP_07555862.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134]
 gi|307296389|ref|ZP_07576213.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411]
 gi|312904260|ref|ZP_07763422.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635]
 gi|312906034|ref|ZP_07765047.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512]
 gi|312909380|ref|ZP_07768236.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516]
 gi|227074842|gb|EEI12805.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104]
 gi|229308303|gb|EEN74290.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322]
 gi|291077723|gb|EFE15087.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712]
 gi|291081338|gb|EFE18301.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613]
 gi|306496044|gb|EFM65629.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411]
 gi|306508619|gb|EFM77717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134]
 gi|306510820|gb|EFM79837.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855]
 gi|310628029|gb|EFQ11312.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512]
 gi|310632356|gb|EFQ15639.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635]
 gi|311290404|gb|EFQ68960.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516]
 gi|315025780|gb|EFT37712.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2137]
 gi|315029104|gb|EFT41036.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4000]
 gi|315031452|gb|EFT43384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0017]
 gi|315145224|gb|EFT89240.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2141]
 gi|315151577|gb|EFT95593.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0012]
 gi|315157733|gb|EFU01750.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0312]
 gi|315161923|gb|EFU05940.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0645]
 gi|315575349|gb|EFU87540.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309B]
 gi|315578806|gb|EFU90997.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0630]
 gi|315581379|gb|EFU93570.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309A]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|218258215|ref|ZP_03474617.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225664|gb|EEC98314.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1075

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 14/134 (10%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII--TAWSHLSD 94
           A+AG+GKTH L    L LL         +L +T T  A  EM  R+++ +   A    SD
Sbjct: 7   ASAGAGKTHKLTGEYLTLLFTGPGAFRRILAVTFTNKATDEMKTRIVDELYNLASGRKSD 66

Query: 95  --EILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             E+L++   +T+ Q +K       +A  +LI IL       + TI  F +  M+ F  E
Sbjct: 67  YVELLTSTYSLTEDQVRK-------QAAKILIDILHDYSAFNISTIDRFFQQTMRAFTRE 119

Query: 151 ANITSHFAIADEEQ 164
             +   + I  +++
Sbjct: 120 IGLQGGYGIEMDQE 133


>gi|213962690|ref|ZP_03390951.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno]
 gi|213954685|gb|EEB66006.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno]
          Length = 783

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+ +I+
Sbjct: 28 VIAGAGSGKTRVLTYRIANLMRQGVDAFHILALTFTNKAANEMKKRIADIV 78


>gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 841

 Score = 39.7 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 29/191 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L +R+  L+      P  +L +T T  AAAEM  RV ++         
Sbjct: 64  IVAGAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMW 123

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           ++ +  +   IL      + G   N +  D   AR LL T++     L ++   A    +
Sbjct: 124 VSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLL-TMIAKDMQLDLKKYSA--RVL 180

Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
             Q     N  I+   A A+ E++K   E     T+AS+  +    L+ A        N 
Sbjct: 181 ANQISNRKNELISPEQARAEAERTKNPFE----ITVASVYEEYQRRLRAA--------NS 228

Query: 202 EDIETLISDII 212
            D + LI +++
Sbjct: 229 VDFDDLIGEVV 239


>gi|228950057|ref|ZP_04112242.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809584|gb|EEM56020.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 702

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           A AGSGKT +L  +V  ++     +P+ ++ LT TK AA EM  R+ ++
Sbjct: 80  AGAGSGKTSVLTSKVGYMMNYKQINPANIMILTFTKKAAEEMRSRISDL 128


>gi|170758795|ref|YP_001788588.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str.
          Loch Maree]
 gi|169405784|gb|ACA54195.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str.
          Loch Maree]
          Length = 738

 Score = 39.7 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++   N +PS +L +T T  AA EM  R+  ++
Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75


>gi|315166930|gb|EFU10947.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1341]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|238926784|ref|ZP_04658544.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531]
 gi|238885316|gb|EEQ48954.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531]
          Length = 746

 Score = 39.7 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  LL     P  +L +T T  AA EM  RV  +I
Sbjct: 24 IVAGAGSGKTRVLTFRIANLLEHGVPPYRILAITFTNKAAREMRERVDTLI 74


>gi|227889452|ref|ZP_04007257.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC
           33200]
 gi|227849930|gb|EEJ60016.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC
           33200]
          Length = 772

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++
Sbjct: 51  VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 102


>gi|199597352|ref|ZP_03210783.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus
          HN001]
 gi|199591868|gb|EDY99943.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus
          HN001]
          Length = 750

 Score = 39.7 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          ++  ++E +LA++      + A AGSGKT +L  R+  L+   N +P  +L +T T  AA
Sbjct: 10 MNDKQAEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNKAA 67

Query: 76 AEMSHRVLEII 86
           EM  RV +++
Sbjct: 68 REMRERVGKLV 78


>gi|42519596|ref|NP_965526.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533]
 gi|41583885|gb|AAS09492.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533]
          Length = 748

 Score = 39.7 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA+EM  RV            
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAASEMKERV------------ 74

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   K+ G   +   MS                   T HA C  I+++   +   +
Sbjct: 75  -------QKLLGPAADSVWMS-------------------TFHALCVRILRRDAKKIGYS 108

Query: 155 SHFAIADEEQSKKLIEEAKK 174
           ++F+IAD  +   LI+  +K
Sbjct: 109 NNFSIADSAEQLTLIKRIEK 128


>gi|258508010|ref|YP_003170761.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
 gi|257147937|emb|CAR86910.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
 gi|259649338|dbj|BAI41500.1| DNA helicase [Lactobacillus rhamnosus GG]
          Length = 750

 Score = 39.3 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          ++  ++E +LA++      + A AGSGKT +L  R+  L+   N +P  +L +T T  AA
Sbjct: 10 MNDKQAEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNKAA 67

Query: 76 AEMSHRVLEII 86
           EM  RV +++
Sbjct: 68 REMRERVGKLV 78


>gi|229551867|ref|ZP_04440592.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
 gi|258539285|ref|YP_003173784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
 gi|229314811|gb|EEN80784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
 gi|257150961|emb|CAR89933.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
          Length = 750

 Score = 39.3 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          ++  ++E +LA++      + A AGSGKT +L  R+  L+   N +P  +L +T T  AA
Sbjct: 10 MNDKQAEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNKAA 67

Query: 76 AEMSHRVLEII 86
           EM  RV +++
Sbjct: 68 REMRERVGKLV 78


>gi|58578906|ref|YP_197118.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
 gi|58417532|emb|CAI26736.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AG+GKT  +  R+  +L  N A PS +L +T T  AA EM  R+ E+  A
Sbjct: 27 AGAGTGKTRTMTSRIAYVLNNNFALPSQILAVTFTNKAANEMLSRINELTCA 78


>gi|84516406|ref|ZP_01003765.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53]
 gi|84509442|gb|EAQ05900.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53]
          Length = 797

 Score = 39.3 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A AG+GKT  L  R+  +L   +A P  +L +T T  AA EM HR+  ++
Sbjct: 52  AGAGTGKTKALTSRIAHVLATRSARPQEVLAVTFTNKAAREMKHRIAALM 101


>gi|311898256|dbj|BAJ30664.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
          Length = 1073

 Score = 39.3 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80
          EQ+ A   P     + A AGSGKT ++  RV+ L+ + A  P  +L LT T  AA E++ 
Sbjct: 24 EQVAAIGAPMAPGVIVAGAGSGKTTVMAARVVWLVGSGAVRPEQVLGLTFTNKAAGELAE 83

Query: 81 RV 82
          RV
Sbjct: 84 RV 85


>gi|291447590|ref|ZP_06586980.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350537|gb|EFE77441.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 1201

 Score = 39.3 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 35/154 (22%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV + + A
Sbjct: 40  PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRKALIA 99

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                     A +T      P+                 PG   + T HAF   ++ +  
Sbjct: 100 ----------AGVTDPDVIDPDNP---------------PGEPTISTYHAFAGRLLTEHG 134

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           L   +         E S +L+ +A +  LA+ +L
Sbjct: 135 LRIGL---------EPSTRLLADATRYQLAAKVL 159


>gi|257784187|ref|YP_003179404.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
 gi|257472694|gb|ACV50813.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
          Length = 812

 Score = 39.3 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 43/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  ++      P  +L +T T  AAAEM  R+  ++        
Sbjct: 25  VLAGAGSGKTRVLTFRIAHMIADEGVRPWQVLAITFTNKAAAEMRERLEALL-------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         PN                   G+ V T HA C  ++++        
Sbjct: 77  --------------PNNIR----------------GMWVCTFHAMCVRLLREDGDRLGYG 106

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            +FAI D++ SK+L+    K+ L+ + +D
Sbjct: 107 PNFAIYDDDDSKRLV----KAILSDLDID 131


>gi|57238970|ref|YP_180106.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
 gi|57161049|emb|CAH57956.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AG+GKT  +  R+  +L  N A PS +L +T T  AA EM  R+ E+  A
Sbjct: 27 AGAGTGKTRTITSRIAYILNNNFALPSQILAVTFTNKAANEMLSRINELTCA 78


>gi|315172193|gb|EFU16210.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1346]
          Length = 791

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|291539996|emb|CBL13107.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis XB6B4]
          Length = 755

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AGSGKT +L  R   L+     +P  ++ +T T  AA EM  R+ +I+   S
Sbjct: 34 AGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITFTNKAAGEMRERIDKIVGFGS 87


>gi|293365449|ref|ZP_06612158.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037]
 gi|291315817|gb|EFE56261.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037]
          Length = 1217

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91


>gi|282866610|ref|ZP_06275652.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558512|gb|EFB64072.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 1164

 Score = 39.3 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 35/167 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 25  IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 84

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV + + A          A +T      P+                 PG   + T
Sbjct: 85  GELAERVRKALVA----------AGVTDPDVIDPDNP---------------PGEPSIST 119

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            HAF   ++ +  L   +         E + +L+ +A +  LA+ +L
Sbjct: 120 YHAFAGRLLTEHGLRIGL---------EPTTRLLADATRYQLAARVL 157


>gi|239944122|ref|ZP_04696059.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239990574|ref|ZP_04711238.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 1191

 Score = 39.3 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 35/154 (22%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV + + A
Sbjct: 30  PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRKALIA 89

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                     A +T      P+                 PG   + T HAF   ++ +  
Sbjct: 90  ----------AGVTDPDVIDPDNP---------------PGEPTISTYHAFAGRLLTEHG 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           L   +         E S +L+ +A +  LA+ +L
Sbjct: 125 LRIGL---------EPSTRLLADATRYQLAAKVL 149


>gi|153939400|ref|YP_001392617.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
          Langeland]
 gi|152935296|gb|ABS40794.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
          Langeland]
          Length = 738

 Score = 39.3 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++   N +PS +L +T T  AA EM  R+  ++
Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75


>gi|304436816|ref|ZP_07396782.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149
          str. 67H29BP]
 gi|304370188|gb|EFM23847.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149
          str. 67H29BP]
          Length = 746

 Score = 39.3 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  LL     P  +L +T T  AA EM  RV  +I
Sbjct: 24 IVAGAGSGKTRVLTFRIANLLEHGVPPYRILAITFTNKAAREMRERVDALI 74


>gi|227541926|ref|ZP_03971975.1| superfamily I ATP-dependent helicase [Corynebacterium
          glucuronolyticum ATCC 51866]
 gi|227182369|gb|EEI63341.1| superfamily I ATP-dependent helicase [Corynebacterium
          glucuronolyticum ATCC 51866]
          Length = 686

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
          E+  L      +++ A+ P     + A AG+GKT  +  R+  L+   A  P  +L +T 
Sbjct: 4  ESFSLEDLDPDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLINTGAVSPQRVLAVTF 63

Query: 71 TKAAAAEMSHRV 82
          TK AA EM  R+
Sbjct: 64 TKRAAGEMRDRL 75


>gi|330429634|gb|AEC20968.1| ATP-dependent DNA helicase [Pusillimonas sp. T7-7]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  LL    + +  ++ LT T  AA EMS RV +++  
Sbjct: 30 VLAGAGSGKTRVITQKIAYLLRECGYQARQVVALTFTNKAAREMSERVKQLVDG 83


>gi|317472670|ref|ZP_07931985.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA]
 gi|316899847|gb|EFV21846.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA]
          Length = 735

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  L+    +P  ++ +T T  AA EM  RV
Sbjct: 26 AGAGSGKTRVLTHRIAYLIEQGVNPYHIMAITFTNKAAREMRERV 70


>gi|291537470|emb|CBL10582.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis M50/1]
          Length = 747

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AGSGKT +L  R   L+     +P  ++ +T T  AA EM  R+ +I+   S
Sbjct: 26 AGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITFTNKAAGEMRERIDKIVGFGS 79


>gi|257420982|ref|ZP_05597972.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98]
 gi|257162806|gb|EEU92766.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98]
          Length = 752

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 28  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 76  ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 109 NRNFTIIDPSEQKTLMK 125


>gi|241760514|ref|ZP_04758607.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114]
 gi|241319018|gb|EER55520.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114]
          Length = 666

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 11/84 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AA EM  RV ++         
Sbjct: 20  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVSKMLPKSQTRGL 79

Query: 86  -ITAWSHLSDEILSAEITKIQGKK 108
            I  +  L  +IL  E  +I  KK
Sbjct: 80  TICTFHSLGMKILREEANQIGYKK 103


>gi|261380715|ref|ZP_05985288.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703]
 gi|284796427|gb|EFC51774.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703]
          Length = 666

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 11/84 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT ++ Q++  L++   + P T+  +T T  AA EM  RV ++         
Sbjct: 20  VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVSKMLPKSQTRGL 79

Query: 86  -ITAWSHLSDEILSAEITKIQGKK 108
            I  +  L  +IL  E  +I  KK
Sbjct: 80  TICTFHSLGMKILREEANQIGYKK 103


>gi|58336855|ref|YP_193440.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM]
 gi|227903414|ref|ZP_04021219.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58254172|gb|AAV42409.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM]
 gi|227868890|gb|EEJ76311.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 746

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+   N  P  +L +T T  AA+EM  R  +++
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENNVAPWNILAITFTNKAASEMREREQDLL 78


>gi|15605339|ref|NP_220125.1| DNA helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789347|ref|YP_328433.1| DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|237804958|ref|YP_002889112.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|3329053|gb|AAC68211.1| DNA Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167877|gb|AAX50885.1| DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|231273258|emb|CAX10173.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436144|gb|ADH18318.1| DNA helicase [Chlamydia trachomatis G/9768]
 gi|296437072|gb|ADH19242.1| DNA helicase [Chlamydia trachomatis G/11222]
 gi|296438004|gb|ADH20165.1| DNA helicase [Chlamydia trachomatis G/11074]
 gi|297140506|gb|ADH97264.1| DNA helicase [Chlamydia trachomatis G/9301]
 gi|297748738|gb|ADI51284.1| PcrA [Chlamydia trachomatis D-EC]
 gi|297749618|gb|ADI52296.1| PcrA [Chlamydia trachomatis D-LC]
          Length = 634

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2  LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61

Query: 74 AAAEMSHRV 82
          AA E+  RV
Sbjct: 62 AANELKERV 70


>gi|84494604|ref|ZP_00993723.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84384097|gb|EAP99977.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 729

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE 84
          +A++PT    V A AG+GKT  +  R+   +L+ A  P   L +T T  AA EM  R+ +
Sbjct: 24 VAANPTGPMVVLAGAGTGKTRAITHRIAYAVLSGAQQPQRTLAVTFTARAAGEMRTRLRD 83

Query: 85 I 85
          +
Sbjct: 84 L 84


>gi|237749150|ref|ZP_04579630.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter
          formigenes OXCC13]
 gi|229380512|gb|EEO30603.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter
          formigenes OXCC13]
          Length = 757

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          ++     EQL A + P++SA + A AGSGKT +L  R+  LL       S ++ +T T  
Sbjct: 4  ILDNLNPEQLAAVTLPSQSALILAGAGSGKTRVLTTRIAWLLKTGQVSTSGIMAVTFTNK 63

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 64 AAKEMLSRL 72


>gi|239631845|ref|ZP_04674876.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|239526310|gb|EEQ65311.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
          subsp. paracasei 8700:2]
          Length = 751

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T  AA
Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67

Query: 76 AEMSHRVLEIITA 88
           EM  RV +++ A
Sbjct: 68 REMRERVGKLVDA 80


>gi|191637996|ref|YP_001987162.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|190712298|emb|CAQ66304.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|327382072|gb|AEA53548.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei LC2W]
 gi|327385216|gb|AEA56690.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei BD-II]
          Length = 751

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T  AA
Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67

Query: 76 AEMSHRVLEIITA 88
           EM  RV +++ A
Sbjct: 68 REMRERVGKLVDA 80


>gi|116494556|ref|YP_806290.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116104706|gb|ABJ69848.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei ATCC 334]
          Length = 751

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T  AA
Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67

Query: 76 AEMSHRVLEIITA 88
           EM  RV +++ A
Sbjct: 68 REMRERVGKLVDA 80


>gi|329667843|gb|AEB93791.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 748

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 78


>gi|322389861|ref|ZP_08063402.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903]
 gi|321143442|gb|EFX38879.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903]
          Length = 1221

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 33/186 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR+L  +        L   T T  AA E+  R              
Sbjct: 45  VSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELKER-------------- 90

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L +E+    GK    SD  + +  L   +       + T+ +F + ++ ++     +  
Sbjct: 91  -LESEL----GKALQASDDPELKQHLARQIADVATSDIGTMDSFTQKVLTRYGYLLGLAP 145

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
            F I      ++L++              NE  +  F    +  N E    ++ +    R
Sbjct: 146 QFRILQNASEQRLLQ--------------NEVFQAVFDRYYQGENQEAFVQMVKNFTGQR 191

Query: 216 TALKLI 221
             L L 
Sbjct: 192 KNLTLF 197


>gi|312867393|ref|ZP_07727602.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis
           F0405]
 gi|311097094|gb|EFQ55329.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis
           F0405]
          Length = 1221

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 33/186 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++VQR+L  +        L   T T  AA E+  R              
Sbjct: 45  VSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELKER-------------- 90

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L +E+    GK    SD  + +  L   +       + T+ +F + ++ ++     +  
Sbjct: 91  -LESEL----GKALQASDDPELKQHLARQIADVATSDIGTMDSFTQKVLTRYGYLLGLAP 145

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
            F I      ++L++              NE  +  F    +  N E    ++ +    R
Sbjct: 146 QFRILQNASEQRLLQ--------------NEVFQAVFDRYYQGENQEAFVQMVKNFTGQR 191

Query: 216 TALKLI 221
             L L 
Sbjct: 192 KNLTLF 197


>gi|310780023|ref|YP_003968355.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
 gi|309749346|gb|ADO84007.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
          Length = 1041

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI---ITAWSHL 92
           + A+AG+GKT+ L    +  LL   +   ++ LT T+ A  E+  R+L     IT     
Sbjct: 7   LKASAGTGKTYRLSLEYIASLLLGENFQEIMVLTFTRKATGEIRERILSFLKEITTDGED 66

Query: 93  SDEILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           + EI    +  I+   P+   D  K   +   I++    LK+ TI +F   I ++    +
Sbjct: 67  AQEI----VENIKKLYPDLVVDTEKLVDVYSEIMKNKDRLKIHTIDSFTNIIFKKSIAPS 122

Query: 152 NITSHFAIADEEQSK 166
                + I D++++K
Sbjct: 123 LGIYSYEIIDDDRNK 137


>gi|259506511|ref|ZP_05749413.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
 gi|259165931|gb|EEW50485.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
          Length = 677

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          I+L    + +++ A+ P     + A AG+GKT  +  R+  L+      P+ +L +T T 
Sbjct: 2  INLQDLDEDQRIAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTS 61

Query: 73 AAAAEMSHRV 82
           AA EM HR+
Sbjct: 62 RAAGEMRHRL 71


>gi|255321476|ref|ZP_05362634.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277]
 gi|255301332|gb|EET80591.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277]
          Length = 694

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          DL+ +    Q  A+  T  A  + A AGSGKT  +  R+  L+      PS  L LT T 
Sbjct: 3  DLLDELNESQREAASHTDGAMLILAGAGSGKTKTITTRLAYLISELGIPPSNTLTLTFTN 62

Query: 73 AAAAEMSHRVLEII 86
           AA+EM  R L+++
Sbjct: 63 KAASEMRARALKML 76


>gi|89891413|ref|ZP_01202919.1| DNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516444|gb|EAS19105.1| DNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 775

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+ +I+
Sbjct: 25 VIAGAGSGKTRVLTLRIAYLMQQGVDAFNILSLTFTNKAAREMKKRIADIV 75


>gi|30248124|ref|NP_840194.1| recQ; ATP-dependent DNA helicase [Nitrosomonas europaea ATCC 19718]
 gi|30180009|emb|CAD84004.1| recQ; ATP-dependent DNA helicase [Nitrosomonas europaea ATCC 19718]
          Length = 1457

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78
           T  + ++A D   +  V A  GSGKT ++V R+  LL     P+T ++ LT  + AA E+
Sbjct: 850 TTQKLIVADDDDINRLVLAGPGSGKTRVIVHRIAYLLRVRRVPATSIVALTFNRHAANEI 909

Query: 79  SHRVLEIITA 88
             R+L ++ A
Sbjct: 910 RKRLLALVGA 919


>gi|189499756|ref|YP_001959226.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
 gi|189495197|gb|ACE03745.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
          Length = 735

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 39/163 (23%)

Query: 14  IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           ID++ Q    Q  A   T     V A AGSGKT ++  R+  L+      P  +L LT T
Sbjct: 2   IDILEQLNDVQQQAVQKTDGPVMVLAGAGSGKTRVITYRLAYLIGQKQVAPHQILALTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+           DE+L           P  S                 GL
Sbjct: 62  NKAANEMRQRI-----------DELL----------HPGSSR----------------GL 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + T H+    +++ +        +F+I D + SK LI +  K
Sbjct: 85  WIGTFHSIFARLLRNYIHLIGYDGNFSIYDSDDSKSLIRQVMK 127


>gi|225388765|ref|ZP_03758489.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme
          DSM 15981]
 gi|225045172|gb|EEG55418.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme
          DSM 15981]
          Length = 609

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHR 81
          A + A  GSGKT ++  R+ R L      +PS++L +T T+AAA EM  R
Sbjct: 18 ALILAGPGSGKTTVITNRI-RFLTEEEGVNPSSILVITFTRAAATEMQKR 66


>gi|167748917|ref|ZP_02421044.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662]
 gi|167651539|gb|EDR95668.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662]
          Length = 735

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  L+    +P  ++ +T T  AA EM  RV
Sbjct: 26 AGAGSGKTRVLTHRIAYLIEQGVNPYHIMAITFTNKAAREMRERV 70


>gi|160942246|ref|ZP_02089555.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434803|gb|EDP12570.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC
           BAA-613]
          Length = 780

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  RV  L+     +P  +L +T T  AA EM  RV +++        
Sbjct: 24  ILAGAGSGKTRVLTHRVAYLIEEKQVNPWNILAITFTNKAAGEMRERVDQLVG------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               AE                              + V T H+ C  I+++       T
Sbjct: 77  --FGAE-----------------------------SIWVSTFHSTCVRILRRHIEYLGYT 105

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           ++F+I D +  K L+++  K+
Sbjct: 106 TNFSIYDSDDQKTLMKQVFKA 126


>gi|29375317|ref|NP_814471.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583]
 gi|256617608|ref|ZP_05474454.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200]
 gi|256854412|ref|ZP_05559776.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8]
 gi|256959857|ref|ZP_05564028.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96]
 gi|256964441|ref|ZP_05568612.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704]
 gi|257083649|ref|ZP_05578010.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1]
 gi|257086081|ref|ZP_05580442.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6]
 gi|257089148|ref|ZP_05583509.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188]
 gi|257415291|ref|ZP_05592285.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis AR01/DG]
 gi|257418333|ref|ZP_05595327.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11]
 gi|300861762|ref|ZP_07107842.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11]
 gi|29342777|gb|AAO80541.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583]
 gi|256597135|gb|EEU16311.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200]
 gi|256709972|gb|EEU25016.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8]
 gi|256950353|gb|EEU66985.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96]
 gi|256954937|gb|EEU71569.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704]
 gi|256991679|gb|EEU78981.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1]
 gi|256994111|gb|EEU81413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6]
 gi|256997960|gb|EEU84480.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188]
 gi|257157119|gb|EEU87079.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ARO1/DG]
 gi|257160161|gb|EEU90121.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11]
 gi|300848287|gb|EFK76044.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11]
          Length = 752

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 28  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 76  ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 109 NRNFTIIDPSEQKTLMK 125


>gi|323698557|ref|ZP_08110469.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323458489|gb|EGB14354.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1032

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A  G+GKT  L+ RV RL+    +P  +L LT T+ AA E+  R+
Sbjct: 479 VLAGPGTGKTQTLMGRVERLMDEGVNPKRILALTFTRRAAQELRDRL 525


>gi|257080987|ref|ZP_05575348.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol]
 gi|256989017|gb|EEU76319.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol]
          Length = 752

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 28  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 76  ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 109 NRNFTIIDPSEQKTLMK 125


>gi|237803037|ref|YP_002888231.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274271|emb|CAX11066.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 634

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2  LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61

Query: 74 AAAEMSHRV 82
          AA E+  RV
Sbjct: 62 AANELKERV 70


>gi|240146225|ref|ZP_04744826.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
 gi|257201636|gb|EEU99920.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
          Length = 755

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AGSGKT +L  R   L+     +P  ++ +T T  AA EM  R+ +I+   S
Sbjct: 34 AGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITFTNKAAGEMRERIDKIVGFGS 87


>gi|197335191|ref|YP_002156443.1| helicase IV [Vibrio fischeri MJ11]
 gi|197316681|gb|ACH66128.1| helicase IV [Vibrio fischeri MJ11]
          Length = 687

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           +F    E+  L    +S  LL  D T    V A AGSGKT +LV RV  L+ +  A    
Sbjct: 187 TFFSECESQPLNESQQSALLLNEDHTL---VLAGAGSGKTSVLVARVNYLIQSGQAQADE 243

Query: 65  LLCLTHTKAAAAEMSHRVLE 84
           +L L   + AA EMS R+++
Sbjct: 244 ILLLAFGRQAAQEMSGRIID 263


>gi|126668208|ref|ZP_01739169.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17]
 gi|126627357|gb|EAZ97993.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17]
          Length = 1241

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 22/159 (13%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPS-----------TLLCLTHTKAAAAEMSHR 81
           S  + A+AG+GKT  +    +RL+L +  P             LL +T T AA  E+  R
Sbjct: 21  STLIEASAGTGKTFTIAILYVRLVLGHGQPEGGALAAGLVPPNLLVVTFTDAATKELRDR 80

Query: 82  VLEIITAWSHLSDEIL-----SAEITKIQGKK----PNKSDMSKARHLLITILETPGGLK 132
           +   +T  + +   +      +AE   I   +    P+ +     R  L+   E      
Sbjct: 81  IRIRLTQAAEVFSNVAGNTTPTAETALIHQLRDDSYPDPATWPDCRKKLLLAAEWMDEAA 140

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           V TIHA+C  ++ +   ++   S F +  E     L++E
Sbjct: 141 VSTIHAWCNRMLSEHAFDSG--SLFRLTLETDQSSLMDE 177


>gi|89099734|ref|ZP_01172607.1| YjcD [Bacillus sp. NRRL B-14911]
 gi|89085481|gb|EAR64609.1| YjcD [Bacillus sp. NRRL B-14911]
          Length = 761

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R   +L      P +++ +T T  AAAEM  R+++     S  + 
Sbjct: 158 VLAGAGSGKTRVLTTRTAYMLQELRIDPKSIMLVTFTAKAAAEMKRRLIDYPGIKSAQAQ 217

Query: 95  EILSA 99
           ++L+ 
Sbjct: 218 QLLAG 222


>gi|302553996|ref|ZP_07306338.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302471614|gb|EFL34707.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 1044

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 35/167 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 25  IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 84

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE++ RV +           ++ A +T      P+                 PG   + T
Sbjct: 85  AELAERVRK----------ALVKAGVTDPDAIDPDNP---------------PGEPVIST 119

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            HAF   ++    L   +         E + +L+ +A +  LA+ +L
Sbjct: 120 YHAFAGRLLTDHGLRIGL---------EPTSRLLADATRFQLAARVL 157


>gi|300722702|ref|YP_003711992.1| putative UvrD/REP helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297629209|emb|CBJ89806.1| putative UvrD/REP helicase [Xenorhabdus nematophila ATCC 19061]
          Length = 631

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT +L +RV R L+ N     ++ LT +  AA EM  R+ ++
Sbjct: 22 VLAAAGSGKTRVLTERV-RYLIENTRKDGIIALTFSNKAAEEMQIRLADL 70


>gi|261335293|emb|CBH18287.1| ATP-dependent DNA helicase, putative [Trypanosoma brucei
          gambiense DAL972]
          Length = 845

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 12 ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
          E   ++S   + Q +A   +P++   + A AGSGKT  +  R+  L+L N  P  +L L 
Sbjct: 23 EIEQILSALDNSQRVAVCENPSQPLLIIAGAGSGKTLTMASRIAFLILNNVAPQNILGLC 82

Query: 70 HTKAAAAEMSHRVLEII 86
           ++ AA  +  RV  ++
Sbjct: 83 FSRQAAETLRGRVASVL 99


>gi|238757661|ref|ZP_04618845.1| Helicase IV (75 kDa helicase) [Yersinia aldovae ATCC 35236]
 gi|238704166|gb|EEP96699.1| Helicase IV (75 kDa helicase) [Yersinia aldovae ATCC 35236]
          Length = 684

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           ++ +  F +  ET  L    +S++    +   S  V A AGSGKT +LV R   LL  N 
Sbjct: 182 LVEYQDFFQQVETSPL---NESQRRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNE 238

Query: 60  AHPSTLLCLTHTKAAAAEMSHRV 82
           A P  +L L   + AA EM+ R+
Sbjct: 239 ALPEQILLLAFGRQAADEMNSRI 261


>gi|300361106|ref|ZP_07057283.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03]
 gi|300353725|gb|EFJ69596.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03]
          Length = 757

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++
Sbjct: 37 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 88


>gi|187939873|gb|ACD39011.1| helicase-related protein [Pseudomonas aeruginosa]
          Length = 1126

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-----LEIITAW 89
           + A  G+GKT  LV RV  LL     P  +L LT +  A+AEM+ R+     LE    W
Sbjct: 214 LQAGPGTGKTRTLVARVENLLDEGVDPRRILLLTFSNRASAEMAERIARKRPLEAAALW 272


>gi|83816462|ref|YP_444656.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83757856|gb|ABC45969.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 712

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 38/126 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AG+GKT  L+ R+  L+     P  ++ LT T+ AA +M+ R           +  
Sbjct: 46  IVAGAGTGKTRTLIYRLAYLVETGTRPQQIVLLTFTRRAANDMTAR-----------ASN 94

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L     K++G                            T HAFC  +++Q         
Sbjct: 95  LLDGRCEKVRGG---------------------------TFHAFCLEVLRQHAEALGFPR 127

Query: 156 HFAIAD 161
           +F + D
Sbjct: 128 NFTVLD 133


>gi|74025512|ref|XP_829322.1| ATP-dependent DNA helicase [Trypanosoma brucei TREU927]
 gi|70834708|gb|EAN80210.1| ATP-dependent DNA helicase, putative [Trypanosoma brucei]
          Length = 843

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 12 ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
          E   ++S   + Q +A   +P++   + A AGSGKT  +  R+  L+L N  P  +L L 
Sbjct: 23 EIEQILSALDNSQRVAVCENPSQPLLIIAGAGSGKTLTMASRIAFLILNNVAPQNILGLC 82

Query: 70 HTKAAAAEMSHRVLEII 86
           ++ AA  +  RV  ++
Sbjct: 83 FSRQAAETLRGRVASVL 99


>gi|268319977|ref|YP_003293633.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785]
 gi|262398352|emb|CAX67366.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785]
          Length = 748

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 78


>gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 852

 Score = 39.3 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 29/191 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           + A AGSGKT +L +R+  L+      P  +L +T T  AAAEM  RV ++         
Sbjct: 75  IVAGAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMW 134

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           ++ +  +   IL      + G   N +  D   AR LL T++     L ++   A    +
Sbjct: 135 VSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLL-TMIAKDMQLDLKKYSA--RVL 191

Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
             Q     N  I+   A A+ E++K   E     T+AS+  +    L+ A        N 
Sbjct: 192 ANQISNRKNELISPEQARAEAERTKNPFE----ITVASVYEEYQRRLRAA--------NS 239

Query: 202 EDIETLISDII 212
            D + LI +++
Sbjct: 240 VDFDDLIGEVV 250


>gi|239814543|ref|YP_002943453.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239801120|gb|ACS18187.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 809

 Score = 39.3 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L++    EQ  A + P  +A + A AGSGKT +L  R+  LL      P  +L +T T  
Sbjct: 23 LLANLNPEQRAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNK 82

Query: 74 AAAEMSHRVLEII 86
          AA EM  R+  ++
Sbjct: 83 AAKEMMTRLTAML 95


>gi|152978852|ref|YP_001344481.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes
           130Z]
 gi|150840575|gb|ABR74546.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes
           130Z]
          Length = 1227

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 26/148 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-----ANAHPST---LLCLTHTKAAAAEMSHRV----- 82
           + A+AG+GKT  +    LRLLL     A + P T   +L +T T+A+  E+  R+     
Sbjct: 19  IEASAGTGKTFTMASLYLRLLLQAGDNAFSVPLTVEQILVVTFTEASTEELKERIRARIH 78

Query: 83  -----------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
                       + +T + +  +E L  E  ++  +   K D ++A   L    +     
Sbjct: 79  LAKAQFAAYRETQDLTVFLNTDNEFLVKENGQLTDRFLAKLDPNEAFRRLGFAEQNMDLA 138

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAI 159
            V TIH FC  ++ Q+ + + I  HF +
Sbjct: 139 AVYTIHGFCRRMLMQYAVNSGI--HFNL 164


>gi|327484827|gb|AEA79234.1| Exodeoxyribonuclease V beta chain RecB [Vibrio cholerae LMA3894-4]
          Length = 1208

 Score = 39.3 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 23/148 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKK 167
           C+ ++ Q   E+          +E S K
Sbjct: 138 CQRMLTQNAFESGSRFENEFVTDESSLK 165


>gi|302308651|ref|NP_985640.2| AFR093Wp [Ashbya gossypii ATCC 10895]
 gi|299790729|gb|AAS53464.2| AFR093Wp [Ashbya gossypii ATCC 10895]
          Length = 1131

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          DPT++  + A  G+GKT +L  R   L+ +   +P +++  T TK AA E+  RV  I+
Sbjct: 20 DPTKALQIVAGPGTGKTKVLTTRYAYLVAIKKINPLSIIMTTFTKKAADEIKARVEPIL 78


>gi|256957408|ref|ZP_05561579.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5]
 gi|257077596|ref|ZP_05571957.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1]
 gi|294779926|ref|ZP_06745307.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1]
 gi|256947904|gb|EEU64536.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5]
 gi|256985626|gb|EEU72928.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1]
 gi|294452975|gb|EFG21396.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1]
          Length = 752

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 28  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 76  ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 109 NRNFTIIDPSEQKTLMK 125


>gi|238854177|ref|ZP_04644524.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4]
 gi|238833253|gb|EEQ25543.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4]
          Length = 747

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 78


>gi|229528683|ref|ZP_04418073.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)]
 gi|229332457|gb|EEN97943.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)]
          Length = 1208

 Score = 39.3 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 23/148 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKK 167
           C+ ++ Q   E+          +E S K
Sbjct: 138 CQRMLTQNAFESGSRFENEFVTDESSLK 165


>gi|254037294|ref|ZP_04871371.1| I DNA and RNA helicase [Escherichia sp. 1_1_43]
 gi|226840400|gb|EEH72402.1| I DNA and RNA helicase [Escherichia sp. 1_1_43]
          Length = 1131

 Score = 39.3 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           + A  G+GKT  LV RV  LL     P  +L LT +  AA EM+ R+  + T
Sbjct: 209 LEAGPGTGKTQTLVGRVKGLLSDGVDPRKILLLTFSNKAAGEMAERIARVDT 260


>gi|254515002|ref|ZP_05127063.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma
           proteobacterium NOR5-3]
 gi|219677245|gb|EED33610.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma
           proteobacterium NOR5-3]
          Length = 1042

 Score = 39.3 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 33/146 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +SA AGSGKT+ L  + LR LLA+    P  ++  T T+ AA E+  RV   +    H  
Sbjct: 7   ISAGAGSGKTYTLTGK-LRDLLASGTIRPEGVVATTFTRLAAGELKERVRGSLIKGGH-- 63

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                    H + T +E      + T+++ C  ++++F  EA +
Sbjct: 64  -------------------------HTVATEVEQA---LIGTVNSVCGVLLKRFAFEAGL 95

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLAS 179
                  +E Q+  L   A +  LA+
Sbjct: 96  PPEQRTLEETQAALLFNRAMEHALAT 121


>gi|116630137|ref|YP_815309.1| superfamily I DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095719|gb|ABJ60871.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri ATCC
          33323]
          Length = 757

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++
Sbjct: 37 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 88


>gi|306825212|ref|ZP_07458554.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon
          071 str. 73H25AP]
 gi|304432648|gb|EFM35622.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon
          071 str. 73H25AP]
          Length = 1217

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91


>gi|295114066|emb|CBL32703.1| ATP-dependent DNA helicase PcrA [Enterococcus sp. 7L76]
          Length = 752

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 28  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 76  ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 109 NRNFTIIDPSEQKTLMK 125


>gi|295698460|ref|YP_003603115.1| DNA helicase II [Candidatus Riesia pediculicola USDA]
 gi|291157481|gb|ADD79926.1| DNA helicase II [Candidatus Riesia pediculicola USDA]
          Length = 651

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 39/155 (25%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            +K ++ + +    +  V A AGSGKT +LV R++ LL       +++L LT +  A  E
Sbjct: 6   NSKQKEAVTAPSEENILVLAGAGSGKTRVLVHRIIWLLKKIRVSSTSILTLTFSNKAVLE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV +II    +L  E                                   L + T H
Sbjct: 66  IRRRVNDII----NLCQE----------------------------------NLIIDTFH 87

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
                 ++    E N+  +F I D E  K  I +A
Sbjct: 88  GLAYRFLRVHYSEVNLPYNFQILDSEDQKYFIRKA 122


>gi|196250519|ref|ZP_03149210.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
 gi|196210009|gb|EDY04777.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
          Length = 724

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV
Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERV 76


>gi|171915021|ref|ZP_02930491.1| ATP-dependent DNA helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 665

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AG+GKT  +  R+  ++     PS +L +T T  AA EM  RV +++
Sbjct: 27 AGAGTGKTRTVTMRIAHMVDEGISPSNILSVTFTNKAANEMRERVKDML 75


>gi|114570609|ref|YP_757289.1| ATP-dependent DNA helicase Rep [Maricaulis maris MCS10]
 gi|114341071|gb|ABI66351.1| ATP-dependent DNA helicase, Rep family [Maricaulis maris MCS10]
          Length = 763

 Score = 39.3 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT +L  R+  +L    A P  +L +T T  AA EM  RV +II
Sbjct: 39 VLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNKAAREMKERVGKII 90


>gi|294506408|ref|YP_003570466.1| ATP-dependent DNA helicase [Salinibacter ruber M8]
 gi|294342736|emb|CBH23514.1| ATP-dependent DNA helicase [Salinibacter ruber M8]
          Length = 712

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 38/126 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A AG+GKT  L+ R+  L+     P  ++ LT T+ AA +M+ R           +  
Sbjct: 46  IVAGAGTGKTRTLIYRLAYLVETGTRPQQIVLLTFTRRAANDMTAR-----------ASN 94

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L     K++G                            T HAFC  +++Q         
Sbjct: 95  LLDGRCEKVRGG---------------------------TFHAFCLEVLRQHAEALGFPR 127

Query: 156 HFAIAD 161
           +F + D
Sbjct: 128 NFTVLD 133


>gi|282851210|ref|ZP_06260575.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1]
 gi|282557178|gb|EFB62775.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1]
          Length = 730

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++
Sbjct: 10 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 61


>gi|183598401|ref|ZP_02959894.1| hypothetical protein PROSTU_01795 [Providencia stuartii ATCC 25827]
 gi|188020579|gb|EDU58619.1| hypothetical protein PROSTU_01795 [Providencia stuartii ATCC 25827]
          Length = 684

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
           ++ F +H ET  L S   S+ L   +   +  V A AGSGKT +LV R   LLL   A  
Sbjct: 185 YSDFFQHVETSPLNS---SQALSVINGEDNVLVLAGAGSGKTSVLVARAGWLLLRKLAKA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLE 84
             +L L   + AA EM+ R+ E
Sbjct: 242 EQILLLAFGRKAAQEMNERIQE 263


>gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans
          NG80-2]
 gi|134265444|gb|ABO65639.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans
          NG80-2]
          Length = 724

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV
Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVVPWNILAITFTNKAAREMRERV 76


>gi|255311430|ref|ZP_05354000.1| DNA helicase [Chlamydia trachomatis 6276]
 gi|255317731|ref|ZP_05358977.1| DNA helicase [Chlamydia trachomatis 6276s]
          Length = 634

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2  LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61

Query: 74 AAAEMSHRV 82
          AA E+  RV
Sbjct: 62 AANELKERV 70


>gi|57167773|ref|ZP_00366913.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter coli RM2228]
 gi|305432203|ref|ZP_07401367.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter coli JV20]
 gi|57020895|gb|EAL57559.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter coli RM2228]
 gi|304444746|gb|EFM37395.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter coli JV20]
          Length = 676

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ LA+        + A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSRLNEEQYLAATANFGHNLIIASAGTGKTSTIVARISYLLSQGVSPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMISRL 69


>gi|23014129|ref|ZP_00053963.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 760

 Score = 39.3 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V + AG+GKT +L  R+  +L +N A P   L +T T  AA EM  RV +++
Sbjct: 53  VLSGAGTGKTKVLTSRLAHILASNLAQPWQCLAVTFTNRAAREMKERVAQLV 104


>gi|295401728|ref|ZP_06811694.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius
          C56-YS93]
 gi|312112464|ref|YP_003990780.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1]
 gi|294976215|gb|EFG51827.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius
          C56-YS93]
 gi|311217565|gb|ADP76169.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1]
          Length = 730

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  LL      P  +L +T T  AA EM  RV
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLLAEKQVAPWNILAITFTNKAAREMKERV 76


>gi|229055131|ref|ZP_04195559.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603]
 gi|228721207|gb|EEL72736.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603]
          Length = 743

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68
          S T  L++    +Q  A   T  A +  A AGSGKT +L  R+  LL      P  +L +
Sbjct: 2  STTDKLLNGLNPQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAI 61

Query: 69 THTKAAAAEMSHRVLEII 86
          T T  AA EM  R+ +++
Sbjct: 62 TFTNKAAREMRERIDKLV 79


>gi|59712229|ref|YP_205005.1| DNA helicase IV [Vibrio fischeri ES114]
 gi|59480330|gb|AAW86117.1| DNA helicase IV [Vibrio fischeri ES114]
          Length = 687

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           +F    E+  L    +S  LL  D T    V A AGSGKT +LV RV  L+ +  A    
Sbjct: 187 TFFSECESQPLNESQQSALLLNEDHTL---VLAGAGSGKTSVLVARVNYLIQSGQAQADE 243

Query: 65  LLCLTHTKAAAAEMSHRVLE 84
           +L L   + AA EMS R+++
Sbjct: 244 ILLLAFGRQAAQEMSGRIID 263


>gi|322376656|ref|ZP_08051149.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334]
 gi|321282463|gb|EFX59470.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334]
          Length = 1216

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91


>gi|301066102|ref|YP_003788125.1| superfamily I DNA and RNA helicase [Lactobacillus casei str.
          Zhang]
 gi|300438509|gb|ADK18275.1| Superfamily I DNA and RNA helicase [Lactobacillus casei str.
          Zhang]
          Length = 751

 Score = 39.3 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T  AA
Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67

Query: 76 AEMSHRVLEIITA 88
           EM  RV +++ A
Sbjct: 68 REMRERVGKLVDA 80


>gi|294497110|ref|YP_003560810.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551]
 gi|294347047|gb|ADE67376.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551]
          Length = 741

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV  I+  
Sbjct: 31 AGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKAAREMRERVASIVGG 82


>gi|229131293|ref|ZP_04260195.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196]
 gi|229165271|ref|ZP_04293058.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621]
 gi|228618096|gb|EEK75134.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621]
 gi|228652179|gb|EEL08114.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196]
          Length = 743

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68
          S T  L++    +Q  A   T  A +  A AGSGKT +L  R+  LL      P  +L +
Sbjct: 2  STTDKLLNGLNPQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAI 61

Query: 69 THTKAAAAEMSHRVLEII 86
          T T  AA EM  R+ +++
Sbjct: 62 TFTNKAAREMRERIDKLV 79


>gi|296444468|ref|ZP_06886433.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
 gi|296258115|gb|EFH05177.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
          Length = 777

 Score = 39.3 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AG+GKT +L  R+  +L  A A P  +L +T T  AA EM  RV
Sbjct: 51 VLAGAGTGKTRVLTTRIAHILASAKARPWEILAVTFTNKAAREMRERV 98


>gi|226950697|ref|YP_002805788.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str.
          Kyoto]
 gi|226843377|gb|ACO86043.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str.
          Kyoto]
          Length = 738

 Score = 39.3 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++   N +PS +L +T T  AA EM  R+  ++
Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75


>gi|170755491|ref|YP_001782895.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str.
          Okra]
 gi|169120703|gb|ACA44539.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str.
          Okra]
          Length = 738

 Score = 39.3 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++   N +PS +L +T T  AA EM  R+  ++
Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75


>gi|148381216|ref|YP_001255757.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str.
          ATCC 3502]
 gi|153933103|ref|YP_001385591.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str.
          ATCC 19397]
 gi|153936248|ref|YP_001388997.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str.
          Hall]
 gi|168179081|ref|ZP_02613745.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916]
 gi|148290700|emb|CAL84830.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC
          3502]
 gi|152929147|gb|ABS34647.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str.
          ATCC 19397]
 gi|152932162|gb|ABS37661.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str.
          Hall]
 gi|182670183|gb|EDT82159.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916]
          Length = 738

 Score = 39.3 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++   N +PS +L +T T  AA EM  R+  ++
Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75


>gi|119510681|ref|ZP_01629809.1| DNA helicase II [Nodularia spumigena CCY9414]
 gi|119464635|gb|EAW45544.1| DNA helicase II [Nodularia spumigena CCY9414]
          Length = 774

 Score = 39.3 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68
          + TID +S     Q  A +       V A AGSGKT  L  R+  L+L +  +P  +L +
Sbjct: 2  TTTIDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHGVYPEHILAV 61

Query: 69 THTKAAAAEMSHRV 82
          T T  AA EM  R+
Sbjct: 62 TFTNKAAREMKERI 75


>gi|89899997|ref|YP_522468.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89344734|gb|ABD68937.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 1112

 Score = 39.3 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 23  EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80
           +QLLA   P R   V A  GSGKT  LV R+  L+   A  PS +L LT T  AA E+  
Sbjct: 200 DQLLAIQAPERYVNVVAGPGSGKTSTLVHRIRYLIDEKAVDPSHILVLTFTNKAAFELVD 259

Query: 81  RV 82
           R+
Sbjct: 260 RL 261


>gi|13508079|ref|NP_110028.1| DNA helicase II [Mycoplasma pneumoniae M129]
 gi|2495150|sp|P75438|Y340_MYCPN RecName: Full=Probable DNA helicase MPN_340
 gi|1674189|gb|AAB96144.1| DNA helicase II [Mycoplasma pneumoniae M129]
          Length = 529

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 44/191 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V + AG+GKT ++ +R   L+     +P ++L  T T  AA+EM  R++++I        
Sbjct: 21  VYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDKAASEMRQRIIKLI-------- 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-----FPL 149
                         P KS                  L + T H+F    +Q+     F +
Sbjct: 73  --------------PQKSLQD---------------LHIYTFHSFANRFLQKHGKSDFAI 103

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
            ++    F+  +     + + E  K+ +  + LD N E   AF +    + +ED  T+ +
Sbjct: 104 LSDSNRFFSDYEMGDQLQTVVEIYKNKVVDLELD-NLEYNSAFRDACTDTFNEDFSTISN 162

Query: 210 DIISNRTALKL 220
                R A  L
Sbjct: 163 GQFRKRAATAL 173


>gi|301633254|gb|ADK86808.1| UvrD/REP helicase [Mycoplasma pneumoniae FH]
          Length = 529

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 54/196 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V + AG+GKT ++ +R   L+     +P ++L  T T  AA+EM  R++++I        
Sbjct: 21  VYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDKAASEMRQRIIKLI-------- 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P KS                  L + T H+F    +Q+     +  
Sbjct: 73  --------------PQKSLQD---------------LHIYTFHSFANRFLQK-----HGK 98

Query: 155 SHFAI--------ADEEQSKKL--IEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           S FAI        +D E   +L  + E  K+ +  + LD N E   AF +    + +ED 
Sbjct: 99  SDFAILRDSNRFFSDYEMGDQLQTVVEIYKNKVVDLELD-NLEYNSAFRDACTDTFNEDF 157

Query: 205 ETLISDIISNRTALKL 220
            T+ +     R A  L
Sbjct: 158 STISNGQFRKRAATAL 173


>gi|322437047|ref|YP_004219259.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
 gi|321164774|gb|ADW70479.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 929

 Score = 39.3 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 45/144 (31%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  R+  L+      P  +L +T T  AA EM+ RV +II   S L+   
Sbjct: 27  AGAGSGKTRVITHRIAYLIEERGVSPDAILAVTFTNKAAKEMAERVDKII-GHSSLAKPT 85

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA----- 151
           LS                                    T H+FC  ++++  +EA     
Sbjct: 86  LS------------------------------------TFHSFCVRVLRR-DIEALQVGG 108

Query: 152 -NITSHFAIADEEQSKKLIEEAKK 174
             +T  FAI DE   + +++ A K
Sbjct: 109 KGLTRTFAIYDETDQQAVVKSALK 132


>gi|257470506|ref|ZP_05634596.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317064713|ref|ZP_07929198.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313690389|gb|EFS27224.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 617

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          I+   +   EQL A       + V A AGSGKT  +V R   ++        +L LT TK
Sbjct: 27 INYSKELNEEQLRALTFIEGQYLVIAGAGSGKTRTIVYRTAFMIEKGLAEENILMLTFTK 86

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 87 KAALEMKERL 96


>gi|227535467|ref|ZP_03965516.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
          paracasei ATCC 25302]
 gi|227186877|gb|EEI66944.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
          paracasei ATCC 25302]
          Length = 751

 Score = 39.3 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T  AA
Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67

Query: 76 AEMSHRVLEIITA 88
           EM  RV +++ A
Sbjct: 68 REMRERVGKLVDA 80


>gi|118472301|ref|YP_886308.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118173588|gb|ABK74484.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 1087

 Score = 39.3 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66
          E S  + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A PS +L
Sbjct: 9  ELSAALGLFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGFATPSQVL 67

Query: 67 CLTHTKAAAAEMSHRV 82
           LT T+ AA ++  RV
Sbjct: 68 GLTFTRKAAGQLLRRV 83


>gi|34557269|ref|NP_907084.1| ATP-dependent DNA helicase [Wolinella succinogenes DSM 1740]
 gi|34482985|emb|CAE09984.1| ATP-DEPENDENT DNA HELICASE EC 3.6.1 [Wolinella succinogenes]
          Length = 681

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          S  + A AGSGKT  +  R+  L+      PS  L LT T  AAAEM  R L ++
Sbjct: 23 SLLILAGAGSGKTKTITTRLAYLIEEVGIPPSNTLTLTFTNKAAAEMRERALRLV 77


>gi|319941481|ref|ZP_08015809.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805101|gb|EFW01931.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis
           3_1_45B]
          Length = 1191

 Score = 39.3 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 19/179 (10%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +L +   R   + A+AG+GKT  +   VLR +   +   S +L +T T+AA AE+  R+ 
Sbjct: 70  MLRAPLMRPTLLEASAGTGKTFSIKHLVLRFVAEEDVSVSRMLIMTFTRAATAELKARIQ 129

Query: 84  EIITAWSHL-----SDEILSAEITKI------QGKKPNKSDMSKARHLLITILETPGGLK 132
             ++A   L     +D  + A + +       QG+ P    +S+ R  L    +  G   
Sbjct: 130 SHLSAMHGLMTGTFADSAVDAVLLEQRALWAEQGRDP-AVIVSRLRESLAQ-FDNAG--- 184

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           + TIH FC+ +++     +  +  F +   E    L+EE     + + +L  +E   +A
Sbjct: 185 IFTIHGFCQKVLEDRAFTSGSSIGFELV--ENVDDLVEEVVNEFIRTSLLQLSEREDRA 241


>gi|313667543|ref|YP_004047827.1| DNA helicase II [Neisseria lactamica ST-640]
 gi|313005005|emb|CBN86435.1| DNA helicase II [Neisseria lactamica 020-06]
          Length = 735

 Score = 39.3 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +L+     EQL A   P +SA V A AGSGKT +L  R+  LL  + A   +++ +T   
Sbjct: 9  NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTDQASVHSIMAVTFIN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  R+  +I
Sbjct: 69 KAAKEMQTRLGAMI 82


>gi|307709426|ref|ZP_07645883.1| recombination helicase AddA [Streptococcus mitis SK564]
 gi|307619740|gb|EFN98859.1| recombination helicase AddA [Streptococcus mitis SK564]
          Length = 1216

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91


>gi|293378593|ref|ZP_06624754.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
 gi|292642783|gb|EFF60932.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
          Length = 425

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  RV  L+   N  P  +L +T T  AA EM  RV +++
Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIQEKNVLPWHVLAITFTNKAAREMRERVDKLL 78


>gi|256372491|ref|YP_003110315.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009075|gb|ACU54642.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 593

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHTKAAAAEMS 79
           + E +LA  P R   V A AGSGKT +L +R+  ++ L    P T   LT T+AAA  + 
Sbjct: 15  QREAVLAPAPVR---VIAPAGSGKTLVLTRRIAAQIRLGAVRPRTSAALTFTRAAALSLR 71

Query: 80  HRVLEI------ITAWSHLSDEILSAEITKIQGK 107
            R+         IT   H +  +  +E+ +++GK
Sbjct: 72  QRLARTLDTTLPITTTIHGAALVWLSELARLEGK 105


>gi|89893428|ref|YP_516915.1| hypothetical protein DSY0682 [Desulfitobacterium hafniense Y51]
 gi|89332876|dbj|BAE82471.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1600

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36   VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            V+A  GSGKT ILV ++  LLL  +     LL +T ++AA+ E   R+L +I
Sbjct: 1065 VAAGPGSGKTRILVHKLASLLLMEDVKHEQLLMVTFSRAASNEFKKRLLNLI 1116


>gi|68066901|ref|XP_675422.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56494600|emb|CAH94076.1| hypothetical protein PB000399.00.0 [Plasmodium berghei]
          Length = 198

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL-- 92
            + A  GSGKT  L  R+++ ++      +++C+T T  +A ++  ++++ I     L  
Sbjct: 54  CIIACPGSGKTSTLTARIIKSIIE--RKKSIVCITFTNYSAKDLKEKIIKKINCLIDLCT 111

Query: 93  SDEILSAEITK---IQGKK--PNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ 146
             EI +    +   I G K    K D++K  +     +L+T   + + TIH+FC  I+ +
Sbjct: 112 GKEIQNKLFNRNKNIGGNKIRNKKYDINKTMYKNKFKVLDTT--IFIGTIHSFCRYILLK 169

Query: 147 FPLEANI 153
           +  E  I
Sbjct: 170 YKGEFKI 176


>gi|239625785|ref|ZP_04668816.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520015|gb|EEQ59881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 854

 Score = 39.3 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  RV  L+   + +P  +L +T T  AA EM  RV +++        
Sbjct: 24  ILAGAGSGKTRVLTHRVAYLIDEKDVNPWNILAITFTNKAAGEMRERVDQLVG------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               AE                              + V T H+ C  I+++       T
Sbjct: 77  --FGAE-----------------------------SIWVSTFHSTCVRILRRHIECLGYT 105

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           + F+I D +  K L+++  KS
Sbjct: 106 TSFSIYDSDDQKTLMKQVFKS 126


>gi|210623662|ref|ZP_03293971.1| hypothetical protein CLOHIR_01921 [Clostridium hiranonis DSM 13275]
 gi|210153427|gb|EEA84433.1| hypothetical protein CLOHIR_01921 [Clostridium hiranonis DSM 13275]
          Length = 776

 Score = 39.3 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 19/161 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITA--WSHL 92
           V A  G+GKT I+ + V  LL  N +    +L LT+  +A      R+ +++       +
Sbjct: 23  VPAVPGAGKTFIVTRLVTELLENNINGKEKILILTYMNSAVNNFKGRIKKLLNEKYGEDV 82

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             E   +E    + K+ NK  + +  +            +V TIH+    I+++ P  A 
Sbjct: 83  EIEENLSEEEINEIKRKNKDTLRRLNN----------SYEVMTIHSLATKIIKENPESAM 132

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           +   F IAD+ Q   ++ E  +S L++      E+ KK FY
Sbjct: 133 LNEEFMIADDAQRSIILNECIESYLST------EKGKKYFY 167


>gi|295692389|ref|YP_003600999.1| ATP-dependent DNA helicase pcra [Lactobacillus crispatus ST1]
 gi|295030495|emb|CBL49974.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus ST1]
          Length = 748

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA+EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 73


>gi|239931604|ref|ZP_04688557.1| superfamily I DNA/RNA helicase [Streptomyces ghanaensis ATCC
          14672]
 gi|291439976|ref|ZP_06579366.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC
          14672]
 gi|291342871|gb|EFE69827.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC
          14672]
          Length = 921

 Score = 39.3 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT ++ QR+ RL+   +  P  ++  T T+ AA E+  RV
Sbjct: 20 IVACAGSGKTEVISQRIARLIGRPDVEPKNIVAFTFTEKAAGELKERV 67


>gi|163756230|ref|ZP_02163345.1| ATP-dependent DNA helicase II [Kordia algicida OT-1]
 gi|161323842|gb|EDP95176.1| ATP-dependent DNA helicase II [Kordia algicida OT-1]
          Length = 778

 Score = 39.3 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM +R+  I+
Sbjct: 29 VIAGAGSGKTRVLTYRIAYLMSQGIDAFNILSLTFTNKAAREMKNRIANIV 79


>gi|332180280|gb|AEE15968.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 765

 Score = 39.3 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 41/165 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           H    + +S    EQ  A + + S   + A AGSGKT ++  ++  L+   +  P ++L 
Sbjct: 5   HPTAAEYLSVLNPEQRAAVEHSGSPLLILAGAGSGKTRVITTKIAYLIGEKDVDPYSILA 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T TK AAAEM+                                   S+ARHL      T
Sbjct: 65  VTFTKKAAAEMA-----------------------------------SRARHLEPRAANT 89

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
                ++T H+F    ++    EA +   F + DE+    L+ +A
Sbjct: 90  ----AIRTFHSFGAWFLRLHAQEAGLDPSFTVYDEDDMVTLLTKA 130


>gi|319647077|ref|ZP_08001303.1| PcrA protein [Bacillus sp. BT1B_CT2]
 gi|317390901|gb|EFV71702.1| PcrA protein [Bacillus sp. BT1B_CT2]
          Length = 725

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV  I+
Sbjct: 15 IMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVESIL 66


>gi|227877012|ref|ZP_03995104.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01]
 gi|227863383|gb|EEJ70810.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01]
          Length = 753

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA+EM  R
Sbjct: 32 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 78


>gi|161613408|ref|YP_001587373.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362772|gb|ABX66540.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1127

 Score = 39.3 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           + A  G+GKT  LV RV  L      P  +L LT +  AAAEMS R+
Sbjct: 214 LQAGPGTGKTRTLVARVESLFNDGIDPRRILLLTFSNKAAAEMSERI 260


>gi|323967209|gb|EGB62633.1| UvrD/REP helicase [Escherichia coli M863]
 gi|327253754|gb|EGE65383.1| helicase IV [Escherichia coli STEC_7v]
          Length = 684

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL   +A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGDAAPEQILLLAFGRKAAEEMDERIRE 263


>gi|320008691|gb|ADW03541.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 1174

 Score = 39.3 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 35/167 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 27  IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 86

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV   + A      ++L  +                           PG   + T
Sbjct: 87  GELAERVRRALVAAGVTDPDVLDPD-------------------------NPPGEPSIST 121

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            HAF   ++    L   +         E + +L+ +A +  LA+ +L
Sbjct: 122 YHAFAGRLLTDHGLRIGL---------EPTSRLLADATRYQLAARVL 159


>gi|269215715|ref|ZP_06159569.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122]
 gi|269131202|gb|EEZ62277.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122]
          Length = 770

 Score = 39.3 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  +L      P  +L +T T  AAAEM  R+  ++        
Sbjct: 24  VLAGAGSGKTRVLTYRIAHMLEDLGIQPWQILAITFTNKAAAEMRERLGRLVG------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                 AR           G+ V T H+ C  I++        +
Sbjct: 77  --------------------PAAR-----------GMWVSTFHSMCVRILRTDCERLGFS 105

Query: 155 SHFAIADEEQSKKLIEE 171
             F I D++ SK+L+++
Sbjct: 106 QGFTIYDDDDSKRLVKD 122


>gi|262047039|ref|ZP_06019998.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus
          MV-3A-US]
 gi|293381896|ref|ZP_06627864.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1]
 gi|260572616|gb|EEX29177.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus
          MV-3A-US]
 gi|290921543|gb|EFD98577.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1]
          Length = 748

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA+EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 73


>gi|260576816|ref|ZP_05844800.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
 gi|259020959|gb|EEW24271.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
          Length = 1415

 Score = 39.3 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 14   IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D +      +++  D  ++   V A  GSGKT +LV R+  L+ +    P  +L LT+ 
Sbjct: 1044 VDALDNPAQAEIVRDDREQTNVLVLAGPGSGKTRVLVHRIAYLIRVKREDPRGILVLTYN 1103

Query: 72   KAAAAEMSHRVLEII---TAWSHLS 93
            + AAAE+  R+  +I    AW  +S
Sbjct: 1104 RHAAAEIRERLRLLIGEDAAWVTVS 1128


>gi|269127954|ref|YP_003301324.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312912|gb|ACY99286.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 1128

 Score = 39.3 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLL 66
          E +  ++L   T  +  + S P     V A AGSGK+  +  RV+  L+AN    P  +L
Sbjct: 6  ELARLLELPEPTPEQARVISAPLAPMAVIAGAGSGKSETMAARVV-WLVANGLVRPERVL 64

Query: 67 CLTHTKAAAAEMSHRV 82
           LT T+ AA E++ R+
Sbjct: 65 GLTFTRKAAGELATRI 80


>gi|223939230|ref|ZP_03631111.1| UvrD/REP helicase [bacterium Ellin514]
 gi|223892062|gb|EEF58542.1| UvrD/REP helicase [bacterium Ellin514]
          Length = 692

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 29/57 (50%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          P   + V A AGSGKT  L  RV  LL        +L LT T  AA EM  RV +++
Sbjct: 35 PPGPSLVIAGAGSGKTRTLTFRVGFLLEQGIPADRILLLTFTNKAAREMMRRVSDLL 91


>gi|15606167|ref|NP_213544.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5]
 gi|2983362|gb|AAC06949.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5]
          Length = 669

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  L  +V  L+      P  +LC+T T  AA E+  R+
Sbjct: 20 VVAGAGSGKTKTLTHKVEYLIKEKGLKPYEILCITFTNKAAKEIKERI 67


>gi|329576878|gb|EGG58363.1| hypothetical protein HMPREF9520_01337 [Enterococcus faecalis
           TX1467]
          Length = 191

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV            
Sbjct: 67  VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                          NK            +LET G  + V T H+ C  I+++   +   
Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147

Query: 154 TSHFAIADEEQSKKLIE 170
             +F I D  + K L++
Sbjct: 148 NRNFTIIDPSEQKTLMK 164


>gi|294807341|ref|ZP_06766153.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294445471|gb|EFG14126.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 45/176 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH-PSTLLC 67
           ++  ID +++++   +  +D    + V A AGSGKT +L  ++  LL   N + P  +L 
Sbjct: 2   NTNYIDELNESQCAAVTYNDG--PSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  AA EM  R+   +                           M +AR+L +     
Sbjct: 60  LTFTNKAAREMKERIARQVG--------------------------MERARYLWMG---- 89

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                  T H+    I++        TS F I D   SK L+    +S +  + LD
Sbjct: 90  -------TFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLL----RSIIKEMGLD 134


>gi|283954348|ref|ZP_06371869.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 414]
 gi|283794147|gb|EFC32895.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 414]
          Length = 676

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+  +EQ LA+        V A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGIAPQKIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIGRL 69


>gi|256850561|ref|ZP_05555987.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US]
 gi|256712584|gb|EEU27579.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US]
          Length = 748

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA+EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 73


>gi|256844677|ref|ZP_05550162.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus
          125-2-CHN]
 gi|256613218|gb|EEU18422.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus
          125-2-CHN]
          Length = 748

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA+EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 73


>gi|253990217|ref|YP_003041573.1| DNA helicase IV [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253781667|emb|CAQ84830.1| dna helicase iv [Photorhabdus asymbiotica]
          Length = 684

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV RV  LLL   A P  +L L     AA EM+ R+
Sbjct: 214 VLAGAGSGKTSVLVARVGWLLLRQQAIPEQILLLAFDNPAADEMNERL 261


>gi|126728959|ref|ZP_01744774.1| DNA helicase II, putative [Sagittula stellata E-37]
 gi|126710889|gb|EBA09940.1| DNA helicase II, putative [Sagittula stellata E-37]
          Length = 827

 Score = 39.3 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AG+GKT  L  RV+ LL    A P+ +L +T T  AA EM  RV +++
Sbjct: 50 AGAGTGKTKALTARVVHLLNTGRARPNEILSVTFTNKAAREMKTRVGKVL 99


>gi|313673050|ref|YP_004051161.1| ATP-dependent DNA helicase pcra [Calditerrivibrio nitroreducens
          DSM 19672]
 gi|312939806|gb|ADR18998.1| ATP-dependent DNA helicase PcrA [Calditerrivibrio nitroreducens
          DSM 19672]
          Length = 677

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
          D ++ T+ + +L +D      V A AG+GKT ++  ++  LL      P  +L +T T  
Sbjct: 7  DDLNSTQKDAILYNDG--PLLVIAGAGTGKTRVITYKIAYLLKEMGIPPENILAVTFTNK 64

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV+ ++
Sbjct: 65 AADEMLKRVVHLV 77


>gi|299144359|ref|ZP_07037439.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386
          str. F0131]
 gi|298518844|gb|EFI42583.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386
          str. F0131]
          Length = 730

 Score = 39.3 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          ++  +SE LL ++      + A AGSGKT ++  ++  L+     +PS++L +T T  AA
Sbjct: 6  LNNKQSEALLKTEG--PVLILAGAGSGKTKVVTNKIAYLIDEKRVYPSSILAITFTNKAA 63

Query: 76 AEMSHRVLEII 86
           EM  RV ++I
Sbjct: 64 NEMKERVAKLI 74


>gi|261840154|gb|ACX99919.1| DNA helicase II [Helicobacter pylori 52]
          Length = 681

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R++ L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLVYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|241668460|ref|ZP_04756038.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876993|ref|ZP_05249703.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843014|gb|EET21428.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 671

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 38/135 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV            
Sbjct: 22  VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV------------ 69

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                           KS + K         E   GL + T H+    I+++  L+    
Sbjct: 70  ----------------KSRLDK---------EKSKGLMISTFHSLGLTILKKHFLDLGYK 104

Query: 155 SHFAIADEEQSKKLI 169
            +F + D   S  LI
Sbjct: 105 KNFTLFDSHDSLALI 119


>gi|38233332|ref|NP_939099.1| putative DNA helicase II [Corynebacterium diphtheriae NCTC 13129]
 gi|38199592|emb|CAE49248.1| Putative DNA helicase II [Corynebacterium diphtheriae]
          Length = 683

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          I+L      ++  A  P     + A AG+GKT  +  R+  L+    A P  +L +T T+
Sbjct: 2  INLDDLDDDQRAAAEAPRGPVAILAGAGTGKTRTITYRIAHLIDRGMASPHRVLAVTFTR 61

Query: 73 AAAAEMSHRV 82
           AA EM HR+
Sbjct: 62 RAAGEMRHRL 71


>gi|209884405|ref|YP_002288262.1| DNA helicase II [Oligotropha carboxidovorans OM5]
 gi|209872601|gb|ACI92397.1| DNA helicase II [Oligotropha carboxidovorans OM5]
          Length = 857

 Score = 39.3 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT +L  R+  +L    A PS +L +T T  AA EM  R+
Sbjct: 55  VLAGAGTGKTRVLTSRIAHILSEGRARPSEILSVTFTNKAAREMKQRL 102


>gi|209364296|ref|YP_001425453.2| DNA-dependent helicase II [Coxiella burnetii Dugway 5J108-111]
 gi|207082229|gb|ABS78395.2| DNA helicase II [Coxiella burnetii Dugway 5J108-111]
          Length = 723

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          + P     V A AGSGKT +L  R+  L+   N  P ++L +T T  AA EM  R+
Sbjct: 22 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 77


>gi|33864717|ref|NP_896276.1| UvrD/REP helicase [Synechococcus sp. WH 8102]
 gi|33632240|emb|CAE06696.1| UvrD/REP helicase [Synechococcus sp. WH 8102]
          Length = 797

 Score = 39.3 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 26/148 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  + A P+ +L +T T  AA EM  R LE+         
Sbjct: 24  VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEV--------- 73

Query: 95  EILSAEITKIQGKKPNKS----DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            +L+ ++ + Q  +P  +    D  + R  +    E    L + T HA   A M ++ ++
Sbjct: 74  -LLAQKLAQSQYGQPWSTLPPVDQRQLRSRIYR--EVSKELWIGTFHALF-ARMLRYDID 129

Query: 151 A-------NITSHFAIADEEQSKKLIEE 171
                   + T  F+I DE  ++ L++E
Sbjct: 130 KFKDAEGLSWTKQFSIYDEADAQSLVKE 157


>gi|304390836|ref|ZP_07372788.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325719|gb|EFL92965.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 1191

 Score = 39.3 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 15/197 (7%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T+ +  + + P     V A AGSGKT  +  R++  ++ A   P  +L LT T+ AAAEM
Sbjct: 26  TREQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAEM 85

Query: 79  SHRVLEIITAWSHLSDEI----LSAEITKIQGKKPNKSDMSKARHLLITILE---TPGGL 131
           + R    +  ++ L + +     +AE+  +   K    D+++ R    T+++   TP  L
Sbjct: 86  AARFSLRLDRFASLLESVQERRQTAEVNAVL--KAADFDLNQLRQRFDTLVQRGMTPEML 143

Query: 132 K----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           +    V T  ++   ++ +F       S F    +    +++ +  +S   ++      E
Sbjct: 144 RHPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGE 203

Query: 188 LKKAFYEI-LEISNDED 203
             +    I L ++ND +
Sbjct: 204 NAENLVNILLSLANDTN 220


>gi|266624561|ref|ZP_06117496.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
 gi|288863577|gb|EFC95875.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
          Length = 805

 Score = 39.3 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV +I+
Sbjct: 24 VLAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDKIV 75


>gi|270307688|ref|YP_003329746.1| UvrD/REP helicase [Dehalococcoides sp. VS]
 gi|270153580|gb|ACZ61418.1| UvrD/REP helicase [Dehalococcoides sp. VS]
          Length = 972

 Score = 39.3 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A D  R     A AGSGK+  L  R+ RLL     P  ++  T T+ A+  +  RV + +
Sbjct: 20 AVDTAREVLCLACAGSGKSRTLAYRIARLLAEGEPPEGIVAFTFTEKASESIKRRVSQAL 79

Query: 87 T 87
          T
Sbjct: 80 T 80


>gi|319943193|ref|ZP_08017476.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia
          mirabilis ATCC 51599]
 gi|319743735|gb|EFV96139.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia
          mirabilis ATCC 51599]
          Length = 808

 Score = 39.3 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
          DL++    +Q  A + P+  A + A AGSGKT +L  R+  L+      P+ ++ +T T 
Sbjct: 3  DLLAHLNPQQRAAVTVPSGHALILAGAGSGKTRVLTTRIAWLVGTGQCSPAEIMAVTFTN 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 KAAREMMARL 72


>gi|315445540|ref|YP_004078419.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263843|gb|ADU00585.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 1091

 Score = 39.3 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66
          E S  + L   T+ +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L
Sbjct: 10 ELSRALGLFEPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYATPGEVL 68

Query: 67 CLTHTKAAAAEMSHRV 82
           LT T+ AA ++  RV
Sbjct: 69 GLTFTRKAAGQLLRRV 84


>gi|300669638|sp|Q9PLT8|EX5B_CHLMU RecName: Full=Exodeoxyribonuclease V beta chain
          Length = 1026

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 28/137 (20%)

Query: 30  PTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVL 83
           PT S     ++ A+AG+GKT  + Q +LR LL      T  +L +T T AA  E+  R+ 
Sbjct: 9   PTTSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQ 68

Query: 84  EII--------TAWSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           E +         A SH    +   +S++ TK+      K    K R+ L T+ E    + 
Sbjct: 69  ESLKQALTLFSQALSHPETPLPPYVSSQETKV------KQLYXKXRNSLATLDE----MN 118

Query: 133 VQTIHAFCEAIMQQ-FP 148
           + TIH  C   ++Q FP
Sbjct: 119 IFTIHGLCRFTLEQHFP 135


>gi|296282686|ref|ZP_06860684.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 769

 Score = 39.3 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R+  L+ +  A PS +LC+T T  AA EM  RV
Sbjct: 42 AGAGTGKTSALTARLAHLVAMRLAWPSEILCVTFTNKAAREMRERV 87


>gi|293396721|ref|ZP_06640997.1| helicase IV [Serratia odorifera DSM 4582]
 gi|291420985|gb|EFE94238.1| helicase IV [Serratia odorifera DSM 4582]
          Length = 684

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM+ R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRQEAEPGQILLLAFGRQAAQEMNQRISE 263


>gi|255324817|ref|ZP_05365930.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum
           SK141]
 gi|255298117|gb|EET77421.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum
           SK141]
          Length = 841

 Score = 39.3 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 10  HSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
            SE+ D +++  + Q L   +       + A AGSGKT +L +R+  L+     +P  +L
Sbjct: 34  QSESPDALTEGLNPQQLEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEIL 93

Query: 67  CLTHTKAAAAEMSHRV 82
            +T T  AAAEM  RV
Sbjct: 94  AITFTNKAAAEMKERV 109


>gi|229524317|ref|ZP_04413722.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis
           VL426]
 gi|229337898|gb|EEO02915.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis
           VL426]
          Length = 1208

 Score = 39.3 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEA 151
           C+ ++ Q   E+
Sbjct: 138 CQRMLTQNAFES 149


>gi|332168825|gb|AEE18080.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 795

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+ +I+
Sbjct: 46 VIAGAGSGKTRVLTLRIAYLMSQGVDAFNILSLTFTNKAAREMKKRISDIV 96


>gi|167627907|ref|YP_001678407.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella philomiragia
          subsp. philomiragia ATCC 25017]
 gi|167597908|gb|ABZ87906.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69


>gi|153825966|ref|ZP_01978633.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2]
 gi|149740283|gb|EDM54424.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2]
          Length = 1208

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEA 151
           C+ ++ Q   E+
Sbjct: 138 CQRMLTQNAFES 149


>gi|148257387|ref|YP_001241972.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1]
 gi|146409560|gb|ABQ38066.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1]
          Length = 855

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P  +L +T T  AA EM  R+ E++
Sbjct: 57  VLAGAGTGKTRVLTTRIAHILSQGRARPGEILSVTFTNKAAREMKTRLAEML 108


>gi|309780454|ref|ZP_07675203.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA]
 gi|308920782|gb|EFP66430.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA]
          Length = 706

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++  
Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPKHIAAVTFTNKAAKEMQERVAKLMDG 79


>gi|303326279|ref|ZP_07356722.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
          3_1_syn3]
 gi|302864195|gb|EFL87126.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
          3_1_syn3]
          Length = 766

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 27/46 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT  +V R+  L      P+++L LT T+ AA EM  R
Sbjct: 25 VVAGAGSGKTRTIVYRLAWLAEHGVAPTSILLLTFTRKAAQEMLQR 70


>gi|229513960|ref|ZP_04403422.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21]
 gi|229349141|gb|EEO14098.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21]
          Length = 1208

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEA 151
           C+ ++ Q   E+
Sbjct: 138 CQRMLTQNAFES 149


>gi|221369953|ref|YP_002521049.1| hypothetical protein RSKD131_4116 [Rhodobacter sphaeroides KD131]
 gi|221163005|gb|ACM03976.1| Hypothetical Protein RSKD131_4116 [Rhodobacter sphaeroides KD131]
          Length = 791

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
           V A  GSGKTH+  +RV+ L+      PS +L L+ T+ A AE+  R+
Sbjct: 231 VEAGPGSGKTHVACERVISLVQDEGIAPSRILLLSFTRIAVAELRDRI 278


>gi|254464957|ref|ZP_05078368.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I]
 gi|206685865|gb|EDZ46347.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I]
          Length = 789

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTTRIVHLLSTGRARPNEILSVTFTNKAAREMKERV 95


>gi|170016834|ref|YP_001727753.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20]
 gi|169803691|gb|ACA82309.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20]
          Length = 749

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+   N  P  +L +T T  AA EM  R+  +++
Sbjct: 27 IMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREMRERIAALLS 79


>gi|153828214|ref|ZP_01980881.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39]
 gi|148876303|gb|EDL74438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39]
          Length = 1208

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEA 151
           C+ ++ Q   E+
Sbjct: 138 CQRMLTQNAFES 149


>gi|153213940|ref|ZP_01949136.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587]
 gi|124115593|gb|EAY34413.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587]
          Length = 1208

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEA 151
           C+ ++ Q   E+
Sbjct: 138 CQRMLTQNAFES 149


>gi|15642318|ref|NP_231951.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121586166|ref|ZP_01675957.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80]
 gi|153817895|ref|ZP_01970562.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|153821518|ref|ZP_01974185.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33]
 gi|227082444|ref|YP_002810995.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2]
 gi|229507609|ref|ZP_04397114.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286]
 gi|229512195|ref|ZP_04401674.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33]
 gi|229519331|ref|ZP_04408774.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9]
 gi|229607115|ref|YP_002877763.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236]
 gi|254849444|ref|ZP_05238794.1| exodeoxyribonuclease V [Vibrio cholerae MO10]
 gi|255746995|ref|ZP_05420940.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101]
 gi|262161463|ref|ZP_06030573.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1]
 gi|298500312|ref|ZP_07010117.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757]
 gi|9656886|gb|AAF95464.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549578|gb|EAX59602.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80]
 gi|126511603|gb|EAZ74197.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|126521011|gb|EAZ78234.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33]
 gi|227010332|gb|ACP06544.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2]
 gi|229344020|gb|EEO08995.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9]
 gi|229352160|gb|EEO17101.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33]
 gi|229355114|gb|EEO20035.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286]
 gi|229369770|gb|ACQ60193.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236]
 gi|254845149|gb|EET23563.1| exodeoxyribonuclease V [Vibrio cholerae MO10]
 gi|255735397|gb|EET90797.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101]
 gi|262028774|gb|EEY47428.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1]
 gi|297541005|gb|EFH77059.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757]
          Length = 1208

 Score = 38.9 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEA 151
           C+ ++ Q   E+
Sbjct: 138 CQRMLTQNAFES 149


>gi|310286974|ref|YP_003938232.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium
          bifidum S17]
 gi|309250910|gb|ADO52658.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium
          bifidum S17]
          Length = 1400

 Score = 38.9 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT+ + +R++ L+        +L LT T+ AA+E+  RV   + A
Sbjct: 26 VVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAASELLSRVSAAVLA 78


>gi|296110659|ref|YP_003621040.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154]
 gi|295832190|gb|ADG40071.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154]
          Length = 749

 Score = 38.9 bits (89), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L+   N  P  +L +T T  AA EM  R+
Sbjct: 27 IMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAKEMRERI 74


>gi|145225243|ref|YP_001135921.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217729|gb|ABP47133.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
          Length = 1091

 Score = 38.9 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66
          E S  + L   T+ +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L
Sbjct: 10 ELSRALGLFEPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYATPGEVL 68

Query: 67 CLTHTKAAAAEMSHRV 82
           LT T+ AA ++  RV
Sbjct: 69 GLTFTRKAAGQLLRRV 84


>gi|108798375|ref|YP_638572.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119867472|ref|YP_937424.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|108768794|gb|ABG07516.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119693561|gb|ABL90634.1| UvrD/REP helicase [Mycobacterium sp. KMS]
          Length = 1091

 Score = 38.9 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 1  MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
          M    S  E +  + L + T  +  + + P     V A AG+GKT  +  RV+  L+AN 
Sbjct: 1  MTVRYSPAELASALGLFAPTDEQAAVIAAPPGPVVVIAGAGAGKTETMAARVV-WLVANG 59

Query: 60 -AHPSTLLCLTHTKAAAAEMSHRV 82
           A P  +L LT T+ AA ++  RV
Sbjct: 60 YATPGQVLGLTFTRKAAGQLLRRV 83


>gi|8928266|sp|Q9S3Q0|PCRA_LEUCI RecName: Full=ATP-dependent DNA helicase pcrA
 gi|5762478|gb|AAD51119.1|AF176554_1 DNA helicase PcrA [Leuconostoc citreum]
          Length = 749

 Score = 38.9 bits (89), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+   N  P  +L +T T  AA EM  R+  +++
Sbjct: 27 IMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREMRERIAALLS 79


>gi|161829860|ref|YP_001595927.1| DNA-dependent helicase II [Coxiella burnetii RSA 331]
 gi|161761727|gb|ABX77369.1| DNA helicase II [Coxiella burnetii RSA 331]
          Length = 720

 Score = 38.9 bits (89), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          + P     V A AGSGKT +L  R+  L+   N  P ++L +T T  AA EM  R+
Sbjct: 19 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 74


>gi|310831416|ref|YP_003970059.1| putative UvrD/REP helicase [Cafeteria roenbergensis virus BV-PW1]
 gi|309386600|gb|ADO67460.1| putative UvrD/REP helicase [Cafeteria roenbergensis virus BV-PW1]
          Length = 884

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
          +D  +   +++L+  D +    V A  GSGKTH L+ RV RL+  N  P     ++ +T 
Sbjct: 29 LDWNNYDNNQKLVIQDNSDVILVEAYPGSGKTHTLLGRVKRLVSEN--PLLLPKMIIITF 86

Query: 71 TKAAAAEMSHRV 82
          TK A  E+  ++
Sbjct: 87 TKKAGEELREKI 98


>gi|262404646|ref|ZP_06081201.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586]
 gi|262349678|gb|EEY98816.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586]
          Length = 1208

 Score = 38.9 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEA 151
           C+ ++ Q   E+
Sbjct: 138 CQRMLTQNAFES 149


>gi|227874457|ref|ZP_03992633.1| possible ATP-dependent DNA helicase PcrA [Oribacterium sinus
          F0268]
 gi|227839685|gb|EEJ50139.1| possible ATP-dependent DNA helicase PcrA [Oribacterium sinus
          F0268]
          Length = 622

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          A V A  GSGKT +L +R+  LL        +L L+ T+A++ EM  R  
Sbjct: 35 ALVVAGPGSGKTTVLTERLCTLLERGVPAEKILLLSFTRASSKEMEERFF 84


>gi|212219550|ref|YP_002306337.1| DNA-dependent helicase II [Coxiella burnetii CbuK_Q154]
 gi|212013812|gb|ACJ21192.1| DNA helicase II [Coxiella burnetii CbuK_Q154]
          Length = 723

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          + P     V A AGSGKT +L  R+  L+   N  P ++L +T T  AA EM  R+
Sbjct: 22 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 77


>gi|212213503|ref|YP_002304439.1| DNA-dependent helicase II [Coxiella burnetii CbuG_Q212]
 gi|215919328|ref|NP_821025.2| DNA-dependent helicase II [Coxiella burnetii RSA 493]
 gi|206584213|gb|AAO91539.2| DNA helicase II [Coxiella burnetii RSA 493]
 gi|212011913|gb|ACJ19294.1| DNA helicase II [Coxiella burnetii CbuG_Q212]
          Length = 723

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          + P     V A AGSGKT +L  R+  L+   N  P ++L +T T  AA EM  R+
Sbjct: 22 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 77


>gi|149184424|ref|ZP_01862742.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148831744|gb|EDL50177.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 196

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R+  L+    A PS +LC+T T  AA EM  RV
Sbjct: 42 AGAGTGKTAALTARLAHLIATRRAWPSEILCVTFTNKAAREMRERV 87


>gi|331006665|ref|ZP_08329945.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
          IMCC1989]
 gi|330419518|gb|EGG93904.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
          IMCC1989]
          Length = 745

 Score = 38.9 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          S P  +  + A AGSGKT +LV R+  L+ + +  P +++ +T T  AA EM  R+ +++
Sbjct: 19 SAPACNQLILAGAGSGKTRVLVHRIAWLIQVEHVSPHSIMSVTFTNKAAREMRGRLEDLL 78


>gi|317508740|ref|ZP_07966393.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC
          BAA-974]
 gi|316252988|gb|EFV12405.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC
          BAA-974]
          Length = 804

 Score = 38.9 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT ++ +RV  LL    A P  +L +T T  AA E+  RV
Sbjct: 37 IIAGAGSGKTSVITRRVAWLLAERQARPGEILAITFTNKAAGELKERV 84


>gi|315641090|ref|ZP_07896169.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
 gi|315483098|gb|EFU73615.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
          Length = 754

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI---------IT 87
           A AGSGKT +L  RV  L+   + +P  +L +T T  AA EM  R+  +         I+
Sbjct: 31  AGAGSGKTRVLTHRVAYLIQEKDVNPWNILAITFTNKAAREMRERIHALVGPESEDIWIS 90

Query: 88  AWSHLSDEILSAEITKI 104
            +  +   IL  E+ KI
Sbjct: 91  TFHSMCVRILRREVEKI 107


>gi|290782532|gb|AAF38900.2| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
           Nigg]
          Length = 1026

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 28/137 (20%)

Query: 30  PTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVL 83
           PT S     ++ A+AG+GKT  + Q +LR LL      T  +L +T T AA  E+  R+ 
Sbjct: 9   PTTSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQ 68

Query: 84  EII--------TAWSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           E +         A SH    +   +S++ TK+      K    K R+ L T+ E    + 
Sbjct: 69  ESLKQALTLFSQALSHPETPLPPYVSSQETKV------KQLYXKXRNSLATLDE----MN 118

Query: 133 VQTIHAFCEAIMQQ-FP 148
           + TIH  C   ++Q FP
Sbjct: 119 IFTIHGJCRFTLEQHFP 135


>gi|257052990|ref|YP_003130823.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691753|gb|ACV12090.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 959

 Score = 38.9 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 43/163 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A AG+GKT  + +R   LL     P  +L +T T  AA EM  RV+            
Sbjct: 23  VDAGAGTGKTFAITRRYANLLSEGYEPDDVLLVTFTNNAATEMKERVV------------ 70

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                              ++  + +  + + P    + T H+FC  ++ ++  +A   S
Sbjct: 71  -------------------ARCDYSMSALRDAP----ISTFHSFCHDLLLEYGADA--PS 105

Query: 156 HFAIADE-EQSKKLIE----EAKK-STLASIMLDNNEELKKAF 192
           +  I D+  QS +L+E    EA +  T  S  +D + E +  F
Sbjct: 106 YLGIDDQITQSTQLLENEVIEADRFRTFLSQFVDAHPEHEAVF 148


>gi|254586149|ref|XP_002498642.1| ZYRO0G15224p [Zygosaccharomyces rouxii]
 gi|238941536|emb|CAR29709.1| ZYRO0G15224p [Zygosaccharomyces rouxii]
          Length = 1161

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          DP  +  V A  G+GKT +L  RV  L+L +   P  ++  T T  AA EM  R++ ++
Sbjct: 25 DPDLAVQVIAGPGTGKTKVLTSRVAYLMLHHKIRPQDIIVTTFTNKAAKEMIDRLVSML 83


>gi|85711556|ref|ZP_01042614.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
           baltica OS145]
 gi|85694708|gb|EAQ32648.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
           baltica OS145]
          Length = 1230

 Score = 38.9 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 79/159 (49%), Gaps = 20/159 (12%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLL-------ANAH------PSTLLCLTHTKAAAAEMS 79
           S  + A+AG+GKT+ +    +RL++       +NA       P  +L +T TKAA  E+S
Sbjct: 16  SRLIEASAGTGKTYTIAALYVRLVIGMRADSDSNAALETPLLPRNILVMTFTKAATEELS 75

Query: 80  HRVLEIITAWSHL--SDEILSAE--ITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQ 134
            R+   +   +     D+ ++A+  +T+++     + + ++    LL    E+     V+
Sbjct: 76  DRIRARLAEAARYFRDDDSVAADPFLTQLRATSEAQGESLNYLARLLELASESMDEAAVK 135

Query: 135 TIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEE 171
           TIH +C++++++  F   +  T +    DEE  ++  E+
Sbjct: 136 TIHGWCQSMLKEHAFASGSLFTQNVETDDEELRRQAAED 174


>gi|120552955|ref|YP_957306.1| exodeoxyribonuclease V, beta subunit [Marinobacter aquaeolei VT8]
 gi|120322804|gb|ABM17119.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Marinobacter
           aquaeolei VT8]
          Length = 1241

 Score = 38.9 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 21/161 (13%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPS----------TLLCLTHTKAAAAEMSHRV 82
           SA + A+AG+GKT  +    +RL+L +               LL +T T+AA  E+  R+
Sbjct: 22  SALIEASAGTGKTFTIAILYVRLVLGHGQSEDSPLQNLLPPNLLVVTFTEAATKELRDRI 81

Query: 83  LEIIT----AWSHLSDEI----LSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKV 133
              +T     +S  +D +     +A I K++    P+ +   + R  L+   E      V
Sbjct: 82  RTRLTQAAEVFSEAADSLEPTPETALIHKLRDDSYPDPASWPECRKKLLLAAEWMDEAAV 141

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            TIH FC  ++ +   ++   S F +  E    +L+E+  +
Sbjct: 142 STIHGFCNRMLSEHAFDSG--SLFKLTLETDQSELLEDVAR 180


>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 861

 Score = 38.9 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 44/190 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
           +Q +  +  R+  + A+AG+GKT+ L  RV  ++ +       +LC+T T  AA EM  R
Sbjct: 7   QQRVIDELDRNILLLASAGTGKTNTLAYRVAHIIESGRCEAHQILCMTFTNKAAQEMKSR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  ++                     +P K+                  +++ T H+FC 
Sbjct: 67  IESLV--------------------GQPAKA------------------VEISTFHSFCF 88

Query: 142 AIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            ++QQ    + ++ +   I DEE  K+L    K   +  +   +   + K +  + E  +
Sbjct: 89  YVLQQEGKRDESLYTDVTIFDEEDCKELYLPYKPRNMRDMNFASLISMVKEYRSVYEFYS 148

Query: 201 DEDIETLISD 210
               E+LI D
Sbjct: 149 ----ESLIDD 154


>gi|241664737|ref|YP_002983097.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240866764|gb|ACS64425.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 706

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++  
Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPKHIAAVTFTNKAAKEMQERVAKLMDG 79


>gi|238026680|ref|YP_002910911.1| exodeoxyribonuclease V subunit beta [Burkholderia glumae BGR1]
 gi|237875874|gb|ACR28207.1| Exodeoxyribonuclease V, beta subunit [Burkholderia glumae BGR1]
          Length = 1249

 Score = 38.9 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 33/131 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 28  IEASAGTGKTWNICALYVRLLLERDLDADQILVVTFTKAATAELHERIRARLAQLAHALD 87

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL-------------------KVQT 135
                  T   G  P  +       L  T L   GG+                    + T
Sbjct: 88  -------TGDHGGDPFVAK------LFETTLGPQGGIGTELAAKRVRRALRKFDQAAIHT 134

Query: 136 IHAFCEAIMQQ 146
           IHAFC+  +Q+
Sbjct: 135 IHAFCQRALQE 145


>gi|269955587|ref|YP_003325376.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304268|gb|ACZ29818.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
          Length = 1192

 Score = 38.9 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRV 82
           P     V A AGSGKT  +  RV+  L+AN    P  +L LT T+ AA E+  RV
Sbjct: 86  PLEPTLVVAGAGSGKTETMAARVV-WLIANGLVEPEQVLGLTFTRKAAGELQTRV 139


>gi|218666396|ref|YP_002425609.1| ATP-dependent DNA helicase, UvrD/REP family [Acidithiobacillus
          ferrooxidans ATCC 23270]
 gi|218518609|gb|ACK79195.1| ATP-dependent DNA helicase, UvrD/REP family [Acidithiobacillus
          ferrooxidans ATCC 23270]
          Length = 745

 Score = 38.9 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 37/68 (54%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +I   +++  +AS     A V A AG+GKT  ++ R L L+ +    S +L LT ++ AA
Sbjct: 1  MIILDENQHRVASHKEGPALVLAGAGAGKTASIIGRTLELVESGVPSSRILLLTFSRKAA 60

Query: 76 AEMSHRVL 83
           EM  R +
Sbjct: 61 REMRERAM 68


>gi|257061893|ref|YP_003139781.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802]
 gi|256592059|gb|ACV02946.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802]
          Length = 781

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 20/144 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+      P ++L +T T  AA EM  R+           +
Sbjct: 32  VVAGAGSGKTRALTYRIAHLISYHQVEPESILAVTFTNKAAREMKERI-----------E 80

Query: 95  EILSAEIT-KIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQ------Q 146
           ++ + E+  K  G + +  +  + + LL  + + T   L + T H+ C  I++      Q
Sbjct: 81  KLFAQEMAFKKHGIRFDLLNEYEQKQLLSKVYKSTTKKLWIGTFHSLCTRILRYDINKYQ 140

Query: 147 FPLEANITSHFAIADEEQSKKLIE 170
                    +F+I DE  ++ L++
Sbjct: 141 DERGRQWQRNFSIFDESDAQSLVK 164


>gi|153206879|ref|ZP_01945697.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177']
 gi|165918247|ref|ZP_02218333.1| DNA helicase II [Coxiella burnetii RSA 334]
 gi|120576952|gb|EAX33576.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177']
 gi|165918107|gb|EDR36711.1| DNA helicase II [Coxiella burnetii RSA 334]
          Length = 720

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          + P     V A AGSGKT +L  R+  L+   N  P ++L +T T  AA EM  R+
Sbjct: 19 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 74


>gi|194335096|ref|YP_002016956.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194312914|gb|ACF47309.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 984

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 32/116 (27%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D T      A AGSGK+  L  R+ RL+   A P  ++  T T+ AA  +  RV      
Sbjct: 25  DDTNEILCLACAGSGKSRTLSFRIARLIHEGAKPENIIAFTFTEKAAESIKRRV------ 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                                  S + KA  L + ++   G + + TIHAFC+ ++
Sbjct: 79  ----------------------ASALEKA-GLPVALV---GAMYIGTIHAFCQNLL 108


>gi|294012133|ref|YP_003545593.1| DNA helicase II [Sphingobium japonicum UT26S]
 gi|292675463|dbj|BAI96981.1| DNA helicase II [Sphingobium japonicum UT26S]
          Length = 758

 Score = 38.9 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 28 SDPTRSAWVS--------ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
          ++P R A +S        A AG+GKT  L  R+  L+    A+PS +L +T T  AA EM
Sbjct: 18 NEPQREAVLSTEGPVLVLAGAGTGKTAALTARLAHLIATRRAYPSEILAVTFTNKAAREM 77

Query: 79 SHRVLEII 86
            RV  +I
Sbjct: 78 RERVGRMI 85


>gi|237842345|ref|XP_002370470.1| uvrD/REP helicase domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211968134|gb|EEB03330.1| uvrD/REP helicase domain-containing protein [Toxoplasma gondii
           ME49]
 gi|221502602|gb|EEE28322.1| uvrD/REP helicase domain-containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 2851

 Score = 38.9 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           HS+    +S+ +   +LA  P  +   V A  GSGKT  +  R+LRLLL    P  +L L
Sbjct: 722 HSKIFGQLSEEQRRVVLA--PAHANLCVIAGPGSGKTTAITARILRLLLEGEGP--ILAL 777

Query: 69  THTKAAAAEMSHRVLE 84
           T T+  A E+  RV++
Sbjct: 778 TFTRRGAEELRTRVVD 793


>gi|325479235|gb|EGC82331.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 731

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA-WSHL 92
          V A AGSGKT +L   +  L+   N  P  ++ +T T  AA EM  R+  ++    SHL
Sbjct: 23 VLAGAGSGKTRVLTTSIAYLIEEKNIDPRNIIAITFTNKAANEMKERISNLLNMDVSHL 81


>gi|220933272|ref|YP_002512171.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994582|gb|ACL71184.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
          Length = 721

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          +++DP     V A AGSGKT +L  R+  L+ +    P ++L +T T  AAAEM  R+
Sbjct: 18 VSADPG-PVLVLAGAGSGKTRVLTHRIAWLIQVEGLSPHSILAVTFTNKAAAEMRGRI 74


>gi|218248831|ref|YP_002374202.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801]
 gi|218169309|gb|ACK68046.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801]
          Length = 781

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 20/144 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+      P ++L +T T  AA EM  R+           +
Sbjct: 32  VVAGAGSGKTRALTYRIAHLISYHQVEPESILAVTFTNKAAREMKERI-----------E 80

Query: 95  EILSAEIT-KIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQ------Q 146
           ++ + E+  K  G + +  +  + + LL  + + T   L + T H+ C  I++      Q
Sbjct: 81  KLFAQEMAFKKHGIRFDLLNEYEQKQLLSKVYKSTTKKLWIGTFHSLCTRILRYDINKYQ 140

Query: 147 FPLEANITSHFAIADEEQSKKLIE 170
                    +F+I DE  ++ L++
Sbjct: 141 DERGRQWQRNFSIFDESDAQSLVK 164


>gi|166154823|ref|YP_001654941.1| DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|166155698|ref|YP_001653953.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301336102|ref|ZP_07224346.1| DNA helicase [Chlamydia trachomatis L2tet1]
 gi|165930811|emb|CAP04309.1| DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|165931686|emb|CAP07263.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 634

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2  LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61

Query: 74 AAAEMSHRV 82
          AA E+  R+
Sbjct: 62 AANELKERI 70


>gi|163738701|ref|ZP_02146115.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
 gi|161388029|gb|EDQ12384.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
          Length = 787

 Score = 38.9 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFTNKAAREMKERV 95


>gi|237751626|ref|ZP_04582106.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229372992|gb|EEO23383.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 677

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 23 EQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          EQ  A + P     V A+AG+GKT  +V R+  L+  +  P  +L LT T  A+ EM  R
Sbjct: 6  EQYKACNAPLGHNLVIASAGTGKTSTIVGRIATLIERSIKPHEILLLTFTNKASHEMIER 65

Query: 82 VLEII 86
          V +I 
Sbjct: 66 VGKIF 70


>gi|224282512|ref|ZP_03645834.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139664|ref|ZP_07801857.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132174|gb|EFR49791.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
          Length = 1401

 Score = 38.9 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT+ + +R++ L+        +L LT T+ AA+E+  RV   + A
Sbjct: 26 VVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAASELLSRVSAAVLA 78


>gi|163741587|ref|ZP_02148978.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10]
 gi|161385321|gb|EDQ09699.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10]
          Length = 786

 Score = 38.9 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFTNKAAREMKERV 95


>gi|149375448|ref|ZP_01893218.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893]
 gi|149360153|gb|EDM48607.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893]
          Length = 1234

 Score = 38.9 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 19/141 (13%)

Query: 30  PTR-SAWVSANAGSGKTHILVQRVLRLLLAN----------AHPSTLLCLTHTKAAAAEM 78
           P R S  + A+AG+GKT  L    +RL+L +            P  LL +T T+AA  E+
Sbjct: 14  PLRGSQLIEASAGTGKTFTLALLYVRLVLGHRTVAEPLGEGIMPPNLLVVTFTEAATKEL 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKP--------NKSDMSKARHLLITILETPGG 130
             R+   +T  + L         T +  K P          +D    R  L+   E    
Sbjct: 74  RDRIRARLTEAAALFAAEPDTADTTVMSKDPLVNLRNACPAADWPACRRKLLLAAEWMDE 133

Query: 131 LKVQTIHAFCEAIMQQFPLEA 151
             V TIH +C  ++ +   ++
Sbjct: 134 AAVSTIHGWCNRMLSEHAFDS 154


>gi|91774719|ref|YP_544475.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT]
 gi|91708706|gb|ABE48634.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT]
          Length = 731

 Score = 38.9 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 13 TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
          T  L+     +QL A + P +SA + A AGSGKT +L  R+  L+      P  +L +T 
Sbjct: 8  TTTLLDGLNEKQLEAVTLPHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPHGILSVTF 67

Query: 71 TKAAAAEMSHRV 82
          T  AA EM  R+
Sbjct: 68 TNKAAKEMLTRL 79


>gi|296270932|ref|YP_003653564.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093719|gb|ADG89671.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1128

 Score = 38.9 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPS 63
          S +E +  + + + T  +  + + P     V A AGSGK+  +  RV+  L+AN    P 
Sbjct: 13 SPEEIAAKLGIPAPTPEQAEVIAAPLEPMVVVAGAGSGKSETMAGRVV-WLVANGFVRPD 71

Query: 64 TLLCLTHTKAAAAEMSHRV 82
           +L LT T  AAAE++ RV
Sbjct: 72 QVLGLTFTNKAAAELAERV 90


>gi|198283952|ref|YP_002220273.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665213|ref|YP_002426586.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248473|gb|ACH84066.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517426|gb|ACK78012.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 662

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE---------- 84
           V A AGSGKT ++ ++++ L+      P  +  +T T  AA EM  RV E          
Sbjct: 24  VLAGAGSGKTRVITRKIVHLIREQQVAPRHICAVTFTNKAAREMKSRVGEALQGHSSRGL 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKS 112
           +++ + HL  +IL  +I ++ G + N S
Sbjct: 84  MVSTFHHLGLQILRKDIERL-GYRGNFS 110


>gi|206559483|ref|YP_002230244.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           cenocepacia J2315]
 gi|198035521|emb|CAR51400.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           cenocepacia J2315]
          Length = 1235

 Score = 38.9 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 25  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 84

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 85  TGDDGGDPFIARLLETTLGDGGALDPETAVKRIRRALRAFDQAAIHTIHAFCQRALQE 142


>gi|311063850|ref|YP_003970575.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
 gi|310866169|gb|ADP35538.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 1400

 Score = 38.9 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT+ + +R++ L+        +L LT T+ AA+E+  RV   + A
Sbjct: 26 VVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAASELLSRVSAAVLA 78


>gi|254489019|ref|ZP_05102224.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101]
 gi|214045888|gb|EEB86526.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101]
          Length = 806

 Score = 38.9 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ L+    A P+ +L +T T  AA EM +RV
Sbjct: 50 AGAGTGKTKALTARIVHLMNTGRARPNEILAVTFTNKAAREMKNRV 95


>gi|62261380|gb|AAX77985.1| unknown protein [synthetic construct]
          Length = 706

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 48 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 95


>gi|89074565|ref|ZP_01161037.1| hypothetical helicase IV [Photobacterium sp. SKA34]
 gi|89049669|gb|EAR55228.1| hypothetical helicase IV [Photobacterium sp. SKA34]
          Length = 693

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT +LV R   L+ +  A P  +L L   + AA EMS R+ E ++    ++ 
Sbjct: 214 VLAGAGTGKTSVLVARAGYLIASQQAVPEDILMLAFGRKAAEEMSERMGEKVSDRVKVAT 273

Query: 95  --EILSAEITKIQGKKPN 110
              + S  I +++ +KPN
Sbjct: 274 FHSLGSQIIAEVEKEKPN 291


>gi|325288901|ref|YP_004265082.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964302|gb|ADY55081.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM
           8271]
          Length = 745

 Score = 38.9 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI---------I 86
           + A AGSGKT  L  R+  L+    +   +L +T T  AA EM  RVL +         I
Sbjct: 24  ILAGAGSGKTKALTYRIAHLIAKGVNSWNILAITFTNKAAREMRERVLALVGSEGEGLWI 83

Query: 87  TAWSHLSDEILSAEITKIQG 106
           + +     +IL  EI  ++G
Sbjct: 84  STFHSACVKILRREIAHLEG 103


>gi|295702475|ref|YP_003595550.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319]
 gi|294800134|gb|ADF37200.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319]
          Length = 749

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV  I+  
Sbjct: 39 AGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKAAREMRERVSNIVGG 90


>gi|270291088|ref|ZP_06197311.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4]
 gi|270280484|gb|EFA26319.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4]
          Length = 757

 Score = 38.9 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 43/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  RV  L+   + +P  +L +T T  AA EM  RV  ++        
Sbjct: 27  IMAGAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTNKAAREMRERVANLLG------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E    + V T HA C  I+++   +    
Sbjct: 80  -------------------------------EVASEIWVSTFHALCVRILRRDIEQIGYN 108

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             F+IAD  + + LI    K  LA +  D
Sbjct: 109 RAFSIADPSEQRTLI----KHVLADLNYD 133


>gi|325846882|ref|ZP_08169739.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481124|gb|EGC84168.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 860

 Score = 38.9 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMS 79
          K + L+  D    A V A  G+GKT  +VQ+++ L+      P+ +L  T TK AA E+ 
Sbjct: 4  KKQNLIVDDSKYPAAVLAGPGTGKTFTIVQKIISLIKNEGLSPNKILVTTFTKKAANELI 63

Query: 80 HRV 82
           RV
Sbjct: 64 ERV 66


>gi|317047247|ref|YP_004114895.1| UvrD/REP helicase [Pantoea sp. At-9b]
 gi|316948864|gb|ADU68339.1| UvrD/REP helicase [Pantoea sp. At-9b]
          Length = 1130

 Score = 38.9 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           + A  G+GKT  LV RV  LL     P  +L LT +  AA EM+ R+  +
Sbjct: 214 LEAGPGTGKTQTLVGRVKGLLNEGVDPRKILLLTFSNKAAGEMAERIARV 263


>gi|154314455|ref|XP_001556552.1| hypothetical protein BC1G_05321 [Botryotinia fuckeliana B05.10]
 gi|150848966|gb|EDN24159.1| hypothetical protein BC1G_05321 [Botryotinia fuckeliana B05.10]
          Length = 999

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A  GSGKTH L  R   LL     P  ++  T T  AA EM  R+ ++I
Sbjct: 29 AGPGSGKTHTLTSRTAWLLQQGLQPCNIIVATFTVKAAREMKERIGKLI 77


>gi|57234053|ref|YP_181909.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195]
 gi|57224501|gb|AAW39558.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195]
          Length = 738

 Score = 38.9 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 43/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A  GSGKT ++  R+  L+ +   +P  ++ +T T  AA EM  R             
Sbjct: 25  ILAGPGSGKTRVITHRIAYLIKVVGINPHRIMAVTFTNKAAREMETR------------- 71

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                    L +      G L + T HA C  I++Q  L   + 
Sbjct: 72  -------------------------LNLLAPSAAGRLTMGTFHAICARILRQDGLPLGVP 106

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           + F I D++  + LI++A    +A + LD
Sbjct: 107 ADFVIYDDDDQQSLIKQA----MAELELD 131


>gi|56419918|ref|YP_147236.1| hypothetical protein GK1383 [Geobacillus kaustophilus HTA426]
 gi|56379760|dbj|BAD75668.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 807

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 36  VSANAGSGKTHILVQRVLRL--LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AG+GKT  ++ R++ L  +  +    +++ +T T  AA+ M  ++LE I  +  L+
Sbjct: 117 VKAGAGTGKTTTMINRIMFLKHMQGDLDLRSVVMITFTNEAASNMRSKLLEKIKNYYDLT 176

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF-------CEAIMQQ 146
            +    E  +  G+    +  S AR  L+T  +T G  +   + ++        E  + Q
Sbjct: 177 KDKKYLEWMEEAGRMFIGTIHSFAREFLVTEGQTLGFSRSMEVRSYKHERRRLIEKYIDQ 236

Query: 147 FPLEA 151
           F +E 
Sbjct: 237 FSVEC 241


>gi|16082036|ref|NP_394460.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum
          DSM 1728]
 gi|10640315|emb|CAC12129.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum]
          Length = 885

 Score = 38.9 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A  G+GKT  + Q+ L L+ +   P+ +LC+T T  AA  M  R+++ +
Sbjct: 6  VIAGPGTGKTTSISQKYLELVQSGVDPNDILCITFTNKAAENMRSRIIKAL 56


>gi|325680777|ref|ZP_08160315.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8]
 gi|324107557|gb|EGC01835.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8]
          Length = 1234

 Score = 38.9 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRV 82
          R   VSA AGSGKT +L++R++RLL           LL +T T  AAA+M  ++
Sbjct: 18 RGVTVSAAAGSGKTAVLIERIIRLLTDKEKKIPADKLLAVTFTIDAAAQMRDKL 71


>gi|212550653|ref|YP_002308970.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548891|dbj|BAG83559.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 1038

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 19/148 (12%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVL-EIITAWSHLS 93
           A+AGSGKT+ LV   ++ LL +    +   +L ++ TK A  EM  R+L E+     + +
Sbjct: 9   ASAGSGKTYTLVLEYIKCLLISDFSDYFQYILAVSFTKDATNEMKERILSELYGLALNTN 68

Query: 94  D--------EILSAEITKIQGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIM 144
           D        +IL  E    +G   ++  ++ +A+    TI+     L + TI +F + I+
Sbjct: 69  DSKRFRSSLQILWEE----EGLHWDEKLINMRAKTAFQTIIHNYSRLNITTIDSFFQCII 124

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEA 172
           +    E   ++HF++  E  ++++I E+
Sbjct: 125 RSLVRELGYSNHFSL--ETNTQRVIRES 150


>gi|295836625|ref|ZP_06823558.1| UvrD/Rep family helicase [Streptomyces sp. SPB74]
 gi|197699603|gb|EDY46536.1| UvrD/Rep family helicase [Streptomyces sp. SPB74]
          Length = 1221

 Score = 38.9 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 23  EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80
           EQL   + P     + A AGSGKT ++  RV+ L+   A  P  +L LT T  AAAE++ 
Sbjct: 113 EQLHCVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGAVAPEQVLGLTFTNKAAAELAD 172

Query: 81  RV 82
           RV
Sbjct: 173 RV 174


>gi|86608842|ref|YP_477604.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557384|gb|ABD02341.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 787

 Score = 38.9 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 28/149 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS- 93
           V A AGSGKT  L  R+  L+      P  +L +T T  AA EM  R+ ++         
Sbjct: 27  VVAGAGSGKTRALTHRIAYLVRHYRVDPGEILAVTFTNKAAREMKERIEQLFAEQEAQEQ 86

Query: 94  -----DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ--- 145
                +E+  A+ T+++         S   H  I        L + T H+    I++   
Sbjct: 87  FGIPLEELEPAQATRLK---------SAVYHRWIK------PLWIGTFHSLFAQILRLEI 131

Query: 146 ---QFPLEANITSHFAIADEEQSKKLIEE 171
              Q P     T HF+I DE  ++ L++E
Sbjct: 132 EKYQDPKGRKWTRHFSIFDESDAQSLVKE 160


>gi|319947223|ref|ZP_08021457.1| exonuclease RexA [Streptococcus australis ATCC 700641]
 gi|319747271|gb|EFV99530.1| exonuclease RexA [Streptococcus australis ATCC 700641]
          Length = 1227

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++VQR+L  L        L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMVQRILDQLHRGISIQQLFISTFTVKAATELKERL 91


>gi|284800229|ref|ZP_06390624.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava
           NJ9703]
 gi|284795654|gb|EFC51001.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava
           NJ9703]
          Length = 561

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 37/185 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 20  IEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLN 79

Query: 88  AWSHLSDEI--LSAEITKI---QGKKPN------------KSDMSKARHLLITILETP-- 128
               L  E   +S  + K    + K P+            + D  ++ H LI  L+    
Sbjct: 80  EIQTLGGEPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALS 139

Query: 129 --GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--------AKKSTLA 178
                 + TIH FC+ +++ +           ++D+ + + LI          A  +TLA
Sbjct: 140 QFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTLA 199

Query: 179 SIMLD 183
            ++ D
Sbjct: 200 QLVFD 204


>gi|261211432|ref|ZP_05925720.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341]
 gi|260839387|gb|EEX66013.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341]
          Length = 1208

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 23/133 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82
           + A+AG+GKT+ +    LRL++        +AHP     +L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVIGHGCVETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 83  ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                +  A     D +L + + +        +D + A  LL++         + TIH F
Sbjct: 85  LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137

Query: 140 CEAIMQQFPLEAN 152
           C+ ++ Q   E+ 
Sbjct: 138 CQRMLTQNAFESG 150


>gi|257095814|ref|YP_003169455.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048338|gb|ACV37526.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 661

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT ++ +++  L+ +    PS +  +T T  AA EM  RV  +         
Sbjct: 21  VLAGAGSGKTRVITEKIAYLIESCGFSPSNIAAITFTNKAAREMQERVTRLLAGRPAKGL 80

Query: 86  -ITAWSHLSDEILSAEITKIQGKKPNKS 112
            I+ +  L   IL  E  K  G KPN S
Sbjct: 81  TISTFHALGVRILREE-AKALGYKPNFS 107


>gi|222444703|ref|ZP_03607218.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii
          DSM 2375]
 gi|222434268|gb|EEE41433.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii
          DSM 2375]
          Length = 994

 Score = 38.9 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A  GSGKT ++++RV  L+     +PS+LL +T T+ AA E+  R+ E I
Sbjct: 20 VEAGPGSGKTRVIIERVKFLINELKVNPSSLLVITFTRKAANELKDRLSEDI 71


>gi|160914437|ref|ZP_02076652.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991]
 gi|158433595|gb|EDP11884.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991]
          Length = 729

 Score = 38.9 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 39/144 (27%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           R   + A AGSGKT ++  R+  L+   + +P+ +L +T T  AA EM  RV   +    
Sbjct: 20  RHLRIIAGAGSGKTRVVTTRIAYLIEQCHIYPNKILAITFTNKAAREMKERVEGFLG--- 76

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                              +T   + + TIH+FC  ++++  L 
Sbjct: 77  -----------------------------------DTAQAVMISTIHSFCVRLLREDILV 101

Query: 151 ANITSHFAIADEEQSKKLIEEAKK 174
                +F I D +  + ++ +A K
Sbjct: 102 HGYPRNFTILDADDQRSILRDAYK 125


>gi|315924258|ref|ZP_07920482.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus
          ATCC 23263]
 gi|315622419|gb|EFV02376.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus
          ATCC 23263]
          Length = 736

 Score = 38.9 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +D +++ + E  LA++      + A AGSGKT  ++ R+  +L    A PS +L +T T 
Sbjct: 4  LDGLNEQQREAALATEG--PLLILAGAGSGKTRTIIHRIAYILEQGLAWPSQILAITFTN 61

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 62 KAAGEMRDRI 71


>gi|256821408|ref|YP_003145371.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
 gi|256794947|gb|ACV25603.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
          Length = 726

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          P ++  V A AGSGKT +LV R+  L+     +AH  ++L +T T  AA EM  RV +++
Sbjct: 21 PNKALLVLAGAGSGKTRVLVHRIAWLVQVEHISAH--SILAVTFTNKAAKEMLGRVEDML 78


>gi|221485205|gb|EEE23495.1| hypothetical protein TGGT1_105110 [Toxoplasma gondii GT1]
          Length = 2892

 Score = 38.9 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           HS+    +S+ +   +LA  P  +   V A  GSGKT  +  R+LRLLL    P  +L L
Sbjct: 756 HSKIFGQLSEEQRNVVLA--PAHANLCVIAGPGSGKTTAITARILRLLLEGEGP--ILAL 811

Query: 69  THTKAAAAEMSHRVLEIITA 88
           T T+  A E+  RV++ +++
Sbjct: 812 TFTRRGAEELRTRVVDGLSS 831


>gi|212703872|ref|ZP_03312000.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098]
 gi|212672689|gb|EEB33172.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098]
          Length = 1234

 Score = 38.9 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 13  TIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           T+   S  ++E L A   T +   V A  G+GKT +LV R+  LL      S LL +T T
Sbjct: 537 TLGGFSPAQAEALTAGLETGTPVLVLAGPGAGKTRVLVGRLQYLLAQGVPASHLLAVTFT 596

Query: 72  KAAAAEMSHRV 82
           + AA EM  R+
Sbjct: 597 RRAAQEMRQRL 607


>gi|254367778|ref|ZP_04983799.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica 257]
 gi|134253589|gb|EBA52683.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica 257]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69


>gi|318060452|ref|ZP_07979175.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 1171

 Score = 38.9 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 23 EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
          EQL   + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AAAE++ 
Sbjct: 19 EQLACVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGTVAPEQVLGLTFTNKAAAELAE 78

Query: 81 RV 82
          RV
Sbjct: 79 RV 80


>gi|297520068|ref|ZP_06938454.1| DNA helicase IV [Escherichia coli OP50]
          Length = 590

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 120 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 169


>gi|302521802|ref|ZP_07274144.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
 gi|302430697|gb|EFL02513.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
          Length = 1171

 Score = 38.9 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 23 EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
          EQL   + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AAAE++ 
Sbjct: 19 EQLACVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGTVAPEQVLGLTFTNKAAAELAE 78

Query: 81 RV 82
          RV
Sbjct: 79 RV 80


>gi|89256441|ref|YP_513803.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica LVS]
 gi|115314876|ref|YP_763599.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica OSU18]
 gi|156502543|ref|YP_001428608.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica FTNF002-00]
 gi|290953919|ref|ZP_06558540.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica URFT1]
 gi|295312719|ref|ZP_06803462.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica URFT1]
 gi|89144272|emb|CAJ79555.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica LVS]
 gi|115129775|gb|ABI82962.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica OSU18]
 gi|156253146|gb|ABU61652.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          holarctica FTNF002-00]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69


>gi|328676870|gb|AEB27740.1| ATP-dependent DNA helicase Rep [Francisella cf. novicida Fx1]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69


>gi|302870989|ref|YP_003839625.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
 gi|302573848|gb|ADL41639.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
          Length = 955

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 30/127 (23%)

Query: 37  SANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           SA+AG GKT  +    + L+      P+ ++C+T+T+ AA E+ +R   II+       +
Sbjct: 12  SASAGCGKTENIANLYIDLISQKKILPTEIVCITYTEKAARELKNR---IISKAKQRRLD 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +L+  I+KIQ                           ++TIH+FC  +++ +   A + +
Sbjct: 69  LLT--ISKIQNS------------------------HIKTIHSFCMYLLRFYWAWAKVDA 102

Query: 156 HFAIADE 162
           +F I  E
Sbjct: 103 NFKIVPE 109


>gi|114707166|ref|ZP_01440064.1| DNA helicase II [Fulvimarina pelagi HTCC2506]
 gi|114537362|gb|EAU40488.1| DNA helicase II [Fulvimarina pelagi HTCC2506]
          Length = 849

 Score = 38.9 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           EQ  A + T     V A AG+GKT +L  R+  +L    A PS +L +T T  AA EM  
Sbjct: 40  EQRAAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAWPSQILAVTFTNKAAREMKA 99

Query: 81  RV 82
           R+
Sbjct: 100 RI 101


>gi|83309824|ref|YP_420088.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82944665|dbj|BAE49529.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 864

 Score = 38.9 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V + AG+GKT +L  R+  +L +N A P   L +T T  AA EM  RV +++
Sbjct: 156 VLSGAGTGKTKVLTSRLAHILASNLAQPWQCLAVTFTNRAAREMKERVGQLV 207


>gi|300932818|ref|ZP_07148074.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
          DSM 45100]
          Length = 690

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          D+++    EQL A+  P     + A AG+GKT  +  R+  L+     +P  +L +T T 
Sbjct: 3  DILAGLDPEQLRAATAPRGPVAIIAGAGTGKTRTITHRIAHLVEGGYVNPDRVLAVTFTN 62

Query: 73 AAAAEMSHRVLEIITA 88
           AAAE+  R+  +  A
Sbjct: 63 RAAAELRERLARMNVA 78


>gi|237719544|ref|ZP_04550025.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4]
 gi|229451404|gb|EEO57195.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4]
          Length = 575

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 45/176 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH-PSTLLC 67
           ++  ID +++++   +  +D    + V A AGSGKT +L  ++  LL   N + P  +L 
Sbjct: 2   NTNYIDELNESQCAAVTYNDG--PSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  AA EM  R+   +                           M +AR+L +     
Sbjct: 60  LTFTNKAAREMKERIARQVG--------------------------MERARYLWMG---- 89

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                  T H+    I++        TS F I D   SK L+    +S +  + LD
Sbjct: 90  -------TFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLL----RSIIKEMGLD 134


>gi|124022671|ref|YP_001016978.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9303]
 gi|123962957|gb|ABM77713.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9303]
          Length = 1274

 Score = 38.9 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 16/148 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-------LEIIT 87
           + A+AG+GKT  L    LRLL    H  S LL +T T+AAAAE+  R+       LE + 
Sbjct: 26  LEASAGTGKTFALAHLALRLLTEGGHQISELLVVTFTEAAAAELRSRIGQRLEHALEGLE 85

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL----LITILETPGGLKVQTIHAFCEAI 143
           A  H + +    ++   Q  + N  D+S+ RH     L+  LE+     + TIH FC   
Sbjct: 86  ALDHGATD-KPPDLVLEQWLQCNGHDVSQ-RHQWISSLLVALESLDLADITTIHGFCRRT 143

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171
           +++  LE+       + D  Q  +L++E
Sbjct: 144 LRRQALESGAVMDPRLDDSGQ--QLVQE 169


>gi|158319600|ref|YP_001512107.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs]
 gi|158139799|gb|ABW18111.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs]
          Length = 739

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRS---------AWVSANAGSGKTHILVQRVLRLLLA 58
          + H E I+ +   K  +    +P +            V A AGSGKT +L  R+  L+  
Sbjct: 2  EHHKENINSVHNEKESRYHTLNPMQKNAVLTTEGPVLVLAGAGSGKTRVLTHRIAYLVEE 61

Query: 59 NA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
              P  +L +T T  AA EM  RV  ++  +
Sbjct: 62 KGVSPYHILAITFTNKAAKEMKERVEALLGDY 93


>gi|89069676|ref|ZP_01157013.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516]
 gi|89044756|gb|EAR50862.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516]
          Length = 794

 Score = 38.9 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL   +A P+ +L +T T  AA EM  R+
Sbjct: 51 AGAGTGKTKALTTRIVHLLCTGSARPNEILAVTFTNKAAREMKSRI 96


>gi|319957110|ref|YP_004168373.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319419514|gb|ADV46624.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 685

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  L  R+  LL      P+  L LT T  AA EM  R L +I
Sbjct: 24 AGAGSGKTKTLTTRLAYLLGEVGIDPANTLTLTFTNKAATEMRDRALRMI 73


>gi|291458664|ref|ZP_06598054.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078
          str. F0262]
 gi|291419197|gb|EFE92916.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078
          str. F0262]
          Length = 637

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          A V A  GSGKT +L +R  RLL +      +L L+ T+A+A E+  R
Sbjct: 32 ALVLAGPGSGKTLVLTERAARLLQSGVPGEEILILSFTRASAEELRLR 79


>gi|254374203|ref|ZP_04989685.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548]
 gi|151571923|gb|EDN37577.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69


>gi|134302295|ref|YP_001122264.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|134050072|gb|ABO47143.1| ATP-dependent DNA helicase/UvrD/REP helicase [Francisella
          tularensis subsp. tularensis WY96-3418]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69


>gi|33864183|ref|NP_895743.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33635767|emb|CAE22092.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
          Length = 802

 Score = 38.9 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 20/143 (13%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT  L  R+  L+  + A PS +L +T T  AA EM  R LE+          +
Sbjct: 26  AGAGSGKTRALTHRIAHLIGEHGADPSQILAVTFTNKAAREMKER-LEL----------L 74

Query: 97  LSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ----QFPLE 150
           L+  + + Q  +P +     + R L   I  E    L + T HA    +++    +F  +
Sbjct: 75  LAQRLAQSQFGQPWSTLPPVEQRQLRTRIYREVTKELWIGTFHALFARMLRYDIDKFKDK 134

Query: 151 ANI--TSHFAIADEEQSKKLIEE 171
             +  T  F+I DE  ++ L++E
Sbjct: 135 EGLTWTKQFSIYDEADAQSLVKE 157


>gi|293557128|ref|ZP_06675682.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039]
 gi|291600697|gb|EFF30995.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039]
          Length = 745

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILVS 81


>gi|260948414|ref|XP_002618504.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720]
 gi|238848376|gb|EEQ37840.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720]
          Length = 924

 Score = 38.9 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 8   QEHSETI----DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAH 61
           + HS T      L S    EQ +A++ +     + A  G+GKT +LV RV  LLL     
Sbjct: 72  ENHSTTAPSVDSLFSSLNHEQKMAAEASPGILQIVAGPGTGKTKVLVSRVAHLLLRQRIP 131

Query: 62  PSTLLCLTHTKAAAAEMSHRV 82
           P  ++  T TK AAAE+  R+
Sbjct: 132 PQNIVVTTFTKKAAAELVERL 152


>gi|209965327|ref|YP_002298242.1| UvrD [Rhodospirillum centenum SW]
 gi|209958793|gb|ACI99429.1| UvrD [Rhodospirillum centenum SW]
          Length = 1178

 Score = 38.9 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  LL+   A P  +L +T T  AA EM  RV  ++
Sbjct: 59  VLAGAGTGKTRVLTTRLAHLLVTRRAGPWNILTVTFTNKAAREMRERVEALV 110


>gi|218294885|ref|ZP_03495739.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218244793|gb|EED11317.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 868

 Score = 38.9 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 27/147 (18%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A+AG+GKTH LV+ +  L+ +      +  LT T+ AA E+  R    + A        L
Sbjct: 6   ASAGTGKTHALVEELKGLIQSGVPLRRIAALTFTRKAAEELRGRAKRAVLA--------L 57

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF-CEAIMQQFPLEANITSH 156
           SAE        P   +  +  H          G    TIH F  EA+    PL  ++   
Sbjct: 58  SAE-------DPRLKEAEREVH----------GALFTTIHGFMAEALRHTAPL-LSLDPD 99

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLD 183
           FA+ D   ++ L  E  +S L    LD
Sbjct: 100 FALLDTFLAEALFLEEARSLLYRKGLD 126


>gi|154507581|ref|ZP_02043223.1| hypothetical protein ACTODO_00061 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797215|gb|EDN79635.1| hypothetical protein ACTODO_00061 [Actinomyces odontolyticus ATCC
           17982]
          Length = 674

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT  +  R+       A  PS +L +T T+ AA EM HR+ ++         
Sbjct: 30  VLAGAGTGKTRAITYRIAYGAAVGAFDPSNVLAVTFTQRAAFEMRHRLAQL--------- 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
                 + K Q +  + + + + RH   T++  P
Sbjct: 81  -----GVPKAQARTFHSAALRQLRHFWPTVVGGP 109


>gi|120436669|ref|YP_862355.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella
          forsetii KT0803]
 gi|117578819|emb|CAL67288.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella
          forsetii KT0803]
          Length = 787

 Score = 38.9 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+ +I+
Sbjct: 39 VIAGAGSGKTRVLTYRIAYLMNQGVDAFNILSLTFTNKAAREMKQRISKIV 89


>gi|86132275|ref|ZP_01050870.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
 gi|85817194|gb|EAQ38377.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
          Length = 778

 Score = 38.9 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 32/165 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII------TAW 89
           V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+  I+        W
Sbjct: 29  VIAGAGSGKTRVLTMRIAYLMSQGVDAFNILSLTFTNKAAREMKKRIAGIVGNNEAKNLW 88

Query: 90  SHLSDEILSAEITKIQGKK---PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 I  A+I +I+  K   P+            TI +T      Q       AI+++
Sbjct: 89  MGTFHSIF-AKILRIEADKLGYPSN----------FTIYDT------QDSQRLISAIIKE 131

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
             L+ +I  +      +Q +  I   K S +      NN EL +A
Sbjct: 132 MQLDKDIYKY------KQVQNRISSFKNSLITVRAYANNPELVEA 170


>gi|294614140|ref|ZP_06694061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636]
 gi|291592990|gb|EFF24578.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636]
          Length = 745

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILVS 81


>gi|258406520|ref|YP_003199262.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798747|gb|ACV69684.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 1027

 Score = 38.9 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A  G+GKT  L+ RV RLL        +L LT T+A A E+ +R+    +A + +   
Sbjct: 483 VQAGPGTGKTRTLLARVRRLLEQGTPAKEILLLTFTRATAEELRNRLQLETSAAAEIQAG 542

Query: 96  ILS----AEITKIQGKKPNKSDMSKARHLLI 122
            L     A   +  G+ P       AR L +
Sbjct: 543 TLHSLAYAHFVQHHGRDPVLLSEEDARSLFV 573


>gi|162449161|ref|YP_001611528.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159743|emb|CAN91048.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 820

 Score = 38.9 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 38/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT ++V R+  L++ +   P  +L +T T  AA EM  R+           +
Sbjct: 41  IFAGAGSGKTRVIVYRIANLIVTHRVPPYRILAVTFTNKAATEMKRRL-----------E 89

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            ++  +I K                           L V T HA C  ++++    A + 
Sbjct: 90  GLIGPDIVK--------------------------DLWVGTFHAVCARLLRRHHEAAGLD 123

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +F I D++  + ++    K
Sbjct: 124 KNFIIYDDDDQRAVMNRVLK 143


>gi|94967078|ref|YP_589126.1| ATP-dependent DNA helicase Rep [Candidatus Koribacter versatilis
          Ellin345]
 gi|94549128|gb|ABF39052.1| ATP-dependent DNA helicase, Rep family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 849

 Score = 38.9 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT ++  R+  L+      P ++L +T T  AAAEM  RV  ++
Sbjct: 24 ILAGAGSGKTRVITYRIAYLIEKVGVSPDSILAMTFTNKAAAEMQERVEHLV 75


>gi|126434059|ref|YP_001069750.1| UvrD/REP helicase [Mycobacterium sp. JLS]
 gi|126233859|gb|ABN97259.1| UvrD/REP helicase [Mycobacterium sp. JLS]
          Length = 1091

 Score = 38.9 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 1  MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
          M    S  E +  + L + T  +  + + P     V A AG+GKT  +  RV+  L+AN 
Sbjct: 1  MTARYSPAELASALGLFAPTDEQAAVIAAPPGPVVVIAGAGAGKTETMAARVV-WLVANG 59

Query: 60 -AHPSTLLCLTHTKAAAAEMSHRV 82
           A P  +L LT T+ AA ++  RV
Sbjct: 60 YATPGQVLGLTFTRKAAGQLLRRV 83


>gi|239908585|ref|YP_002955327.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
 gi|239798452|dbj|BAH77441.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
          Length = 1055

 Score = 38.9 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  ++  A    R     A  G+GKTH L+ R+  LL        +L +T T+ AAA++ 
Sbjct: 476 TPDQKRAAETAARHVLTVAGPGTGKTHTLLARIRELLSHGVAADKILAVTFTRRAAAQLR 535

Query: 80  HRV 82
            R+
Sbjct: 536 ERL 538


>gi|144899243|emb|CAM76107.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 745

 Score = 38.9 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V + AG+GKT +L  R+ ++L    A P  +L +T T  AA EM +RV  ++
Sbjct: 54  VLSGAGTGKTRVLTSRLAQILAGRRAQPWQILAVTFTNKAAREMKNRVAHMV 105


>gi|56708170|ref|YP_170066.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|110670641|ref|YP_667198.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          tularensis FSC198]
 gi|254370654|ref|ZP_04986659.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          tularensis FSC033]
 gi|56604662|emb|CAG45720.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|110320974|emb|CAL09103.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          tularensis FSC198]
 gi|151568897|gb|EDN34551.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          tularensis FSC033]
 gi|282159383|gb|ADA78774.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
          tularensis NE061598]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69


>gi|315656388|ref|ZP_07909277.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii
          ATCC 35242]
 gi|315492947|gb|EFU82549.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii
          ATCC 35242]
          Length = 1191

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
          T+ +  + + P     V A AGSGKT  +  R++  ++ A   P  +L LT T+ AAAEM
Sbjct: 26 TREQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAEM 85

Query: 79 SHR 81
          + R
Sbjct: 86 AAR 88


>gi|261350758|ref|ZP_05976175.1| DNA helicase II [Methanobrevibacter smithii DSM 2374]
 gi|288860513|gb|EFC92811.1| DNA helicase II [Methanobrevibacter smithii DSM 2374]
          Length = 994

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A  GSGKT ++++RV  L+     +PS+LL +T T+ AA E+  R+ E I
Sbjct: 20 VEAGPGSGKTRVIIERVKFLINELKVNPSSLLVITFTRKAANELKDRLSEDI 71


>gi|187930550|ref|YP_001901037.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|187727440|gb|ACD28605.1| UvrD/REP helicase [Ralstonia pickettii 12J]
          Length = 706

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++  
Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79


>gi|78183791|ref|YP_376225.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9902]
 gi|78168085|gb|ABB25182.1| ATP-dependent DNA helicase, Rep family [Synechococcus sp. CC9902]
          Length = 798

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  + A P  +L +T T  AA EM  R LE+         
Sbjct: 24  VVAGAGSGKTRALTHRIAHLIGEHGADPGQILAVTFTNKAAREMKER-LEL--------- 73

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA- 151
            +L+  + + Q  +P +     + R L   I  E    L + T HA   A M +F ++  
Sbjct: 74  -LLAQRLAQSQFGQPWSTLPPVQQRQLRSRIYREITKELWIGTFHALF-ARMLRFDIDKF 131

Query: 152 ------NITSHFAIADEEQSKKLIEE 171
                   T  F+I DE  ++ L++E
Sbjct: 132 RDPDGLTWTKQFSIYDEADAQSLVKE 157


>gi|332184092|gb|AEE26346.1| ATP-dependent DNA helicase Rep [Francisella cf. novicida 3523]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69


>gi|262370059|ref|ZP_06063386.1| exonuclease subunit V [Acinetobacter johnsonii SH046]
 gi|262315098|gb|EEY96138.1| exonuclease subunit V [Acinetobacter johnsonii SH046]
          Length = 1250

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 87/190 (45%), Gaps = 27/190 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-------LEIIT 87
           W+ A+AG+GKT  L   ++R+ L    P+ ++  T T+AAAAE+  RV       L    
Sbjct: 27  WIEASAGTGKTFTLSSLMVRIFLGAYLPNQVIATTFTRAAAAELKSRVRARLIETLRYFE 86

Query: 88  AWSHLSDEILSAEI--------TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
               L++  + A+I        TK+      +   ++ R  L  +++    L V T+ +F
Sbjct: 87  GCQSLTEREIQAKIAAEQDPLFTKVLTDYAQRVGFAQER--LKLVIDQLDELFVGTLDSF 144

Query: 140 CEAIMQQFPLEANITSHFAIADEEQS----------KKLIEEAKKSTLASIMLDNNEELK 189
            + ++++F  E+       I D+ QS          ++ I+   +  +  ++L    + +
Sbjct: 145 SQKLLREFSFESGKIERADITDDAQSYTQQLIHDVLREWIQAQPQPVVNYLLLKQKLKTE 204

Query: 190 KAFYEILEIS 199
           +A+  I+E S
Sbjct: 205 QAYVPIVENS 214


>gi|218289369|ref|ZP_03493603.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
          LAA1]
 gi|218240475|gb|EED07656.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
          LAA1]
          Length = 757

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
          S+ +  +++ + E + A+D      V A AGSGKT +L +R++ L+      P  +L +T
Sbjct: 8  SDILKGLNEKQREAVTATDG--PVLVIAGAGSGKTSVLTRRIVYLIAERRVPPWAILAIT 65

Query: 70 HTKAAAAEMSHRVLEII 86
           T  AA EM  R+  ++
Sbjct: 66 FTNKAAREMEERIERLV 82


>gi|208779175|ref|ZP_03246521.1| UvrD/REP helicase family protein [Francisella novicida FTG]
 gi|208744975|gb|EDZ91273.1| UvrD/REP helicase family protein [Francisella novicida FTG]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA EM  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69


>gi|218848008|ref|YP_002454758.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
 gi|218546139|gb|ACK98532.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
          Length = 666

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AGSGKT +L  +V  ++      P+ ++ LT TK AA EM  R+
Sbjct: 80  AGAGSGKTSVLTSKVGYMMNYKEIKPANIMILTFTKKAAEEMKSRI 125


>gi|283852071|ref|ZP_06369345.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283572461|gb|EFC20447.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 1062

 Score = 38.9 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 28/145 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLC---------------LTHTKAAAAEMSH 80
           V A+AGSGKTH L +R + L L        +C               +T T  AAAEM  
Sbjct: 5   VKASAGSGKTHALTERFIALALGTKGNLPRICADSLEAGYALPEIMAVTFTNKAAAEMRE 64

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV   +   +             + G  P  +  +KAR  L  +L     L ++TI +  
Sbjct: 65  RVFHRLKTMA-----------LGLGGTDP--ASRAKARDELEELLIHAERLNIRTIDSLL 111

Query: 141 EAIMQQFPLEANITSHFAIADEEQS 165
             + + F LE  +   F  A ++ +
Sbjct: 112 FLLARAFALELGLRPDFEPAFDDSA 136


>gi|269123275|ref|YP_003305852.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
 gi|268314601|gb|ACZ00975.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
          Length = 981

 Score = 38.9 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 2/110 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE--IITAWSHLS 93
           V A+AG+GKT+ L    +  LL       +L +T TK A AE+ +R+ E  +I      +
Sbjct: 8   VKASAGTGKTYRLSLEYIYFLLLGIDFRNILVMTFTKKATAEIKNRIFEFILIIISKEGN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            E L   I    G K    D+ K   +   +L     +++ TI  F   +
Sbjct: 68  YEELMKNIENNFGYKFKDGDIEKLTDIYKDMLINKNSVRIDTIDGFTSKV 117


>gi|153814085|ref|ZP_01966753.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756]
 gi|317499894|ref|ZP_07958130.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087883|ref|ZP_08336808.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848481|gb|EDK25399.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756]
 gi|316898611|gb|EFV20646.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409578|gb|EGG89019.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 750

 Score = 38.9 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 39/142 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  ++        
Sbjct: 24  ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAEEMRQRVDSLVG------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             + AE                              + V T H+ C  I++++       
Sbjct: 77  --IGAE-----------------------------SIWVSTFHSMCVRILRRYIDRLGYD 105

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
           + F I D +  K L++E  + T
Sbjct: 106 NRFTIYDTDDQKTLMKEVCRKT 127


>gi|69246832|ref|ZP_00604141.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO]
 gi|68195065|gb|EAN09527.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO]
          Length = 744

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81


>gi|297194169|ref|ZP_06911567.1| conserved hypothetical protein [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|297152140|gb|EDY65903.2| conserved hypothetical protein [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 639

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 7/53 (13%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRV 82
          V+A AG+GKTH LV+R L  L  +  P      + +L LT+++AAA E+  R+
Sbjct: 33 VTAGAGAGKTHTLVRR-LDALCGHEDPEEALEAAEILVLTYSRAAARELRERI 84


>gi|152991980|ref|YP_001357701.1| ATP-dependent DNA helicase UvrD [Sulfurovum sp. NBC37-1]
 gi|151423841|dbj|BAF71344.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
          NBC37-1]
          Length = 688

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  L  R+  L+      P+  L LT T  AAAEM  R L+++
Sbjct: 27 AGAGSGKTKTLTARLAYLVGEVGIDPANTLTLTFTNKAAAEMRERALKLM 76


>gi|332092491|gb|EGI97564.1| helicase IV [Shigella boydii 5216-82]
          Length = 684

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPDQILLLAFGRKAAEEMDERIRE 263


>gi|304385365|ref|ZP_07367710.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM
           20284]
 gi|304328572|gb|EFL95793.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM
           20284]
          Length = 760

 Score = 38.9 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 43/149 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  RV  L+   + +P  +L +T T  AA EM  RV  ++        
Sbjct: 30  IMAGAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTNKAAREMRERVANLLG------- 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E    + V T HA C  I+++   +    
Sbjct: 83  -------------------------------EVASEIWVSTFHALCVRILRRDIEQIGYN 111

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             F+IAD  + + LI    K  LA +  D
Sbjct: 112 RAFSIADPSEQRTLI----KHVLADLNYD 136


>gi|293560000|ref|ZP_06676508.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162]
 gi|291606088|gb|EFF35514.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162]
          Length = 744

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81


>gi|123447558|ref|XP_001312517.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121894367|gb|EAX99587.1| hypothetical protein TVAG_427510 [Trichomonas vaginalis G3]
          Length = 1679

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           ++  +VS  AGSGKT++ V+ V   +L++   S +L +T  K AA E+S  +L+II
Sbjct: 460 SKLTFVSGCAGSGKTYLAVKSVFLYVLSHRD-SPILIVTQKKHAADEISKSLLKII 514


>gi|17548006|ref|NP_521408.1| ATP-dependent DNA helicase REP protein [Ralstonia solanacearum
          GMI1000]
 gi|17430312|emb|CAD17077.1| probable atp-dependent dna helicase rep protein [Ralstonia
          solanacearum GMI1000]
          Length = 705

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++  
Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79


>gi|293377660|ref|ZP_06623849.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1]
 gi|292643660|gb|EFF61781.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1]
          Length = 744

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81


>gi|197334387|ref|YP_002155339.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11]
 gi|197315877|gb|ACH65324.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11]
          Length = 1208

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 29/139 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIASLYLRLLLGHGDEGTRHQEELTVDRILVVTFTEAATAELRERIRAK 82

Query: 86  I----TAWSHL--------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           I     A++          SD ++   +  I        D   A  +L+    +     +
Sbjct: 83  IHDARLAFARAVHNNDYKSSDPVIDPLLASI-------GDHKSATQILLNAERSMDEASI 135

Query: 134 QTIHAFCEAIMQQFPLEAN 152
            TIH FC+ ++ Q   E+ 
Sbjct: 136 FTIHGFCQRMLTQNAFESG 154


>gi|85374356|ref|YP_458418.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84787439|gb|ABC63621.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 776

 Score = 38.9 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R+  L+    A PS +LC+T T  AA EM  RV
Sbjct: 50 AGAGTGKTAALTARLAHLIATRKAWPSEILCVTFTNKAAREMRSRV 95


>gi|38233329|ref|NP_939096.1| putative helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199589|emb|CAE49245.1| Putative helicase [Corynebacterium diphtheriae]
          Length = 1076

 Score = 38.9 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
           T  +  + S P     V A AG+GKT  +  RV+ L+ +    P  +L LT T+ AA ++
Sbjct: 18  TPQQADVISSPLAPTLVVAGAGAGKTETMAARVVWLVASGLVDPDRVLGLTFTRKAAQQL 77

Query: 79  SHRV---LEIITAWSHLSD-EILSAEITKIQGKKPNKS 112
           S R+   LE +    +L D +   A  TK++   P  S
Sbjct: 78  SKRIRDRLEQLAGIDNLRDLDPTGALATKLEAIAPTVS 115


>gi|323143387|ref|ZP_08078073.1| topoisomerase DNA-binding C4 zinc finger domain protein
           [Succinatimonas hippei YIT 12066]
 gi|322416835|gb|EFY07483.1| topoisomerase DNA-binding C4 zinc finger domain protein
           [Succinatimonas hippei YIT 12066]
          Length = 999

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLE 84
           A AG+GKT ++V + L L+++  A P  +L L + K AA E+  R+ E
Sbjct: 211 AAAGTGKTSVIVAKALYLVVSKQAQPKDILILAYNKNAAEELRQRIKE 258


>gi|315606173|ref|ZP_07881201.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312131|gb|EFU60220.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 670

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT  +  R+       A  PS +L +T T+ AA EM HR+ ++         
Sbjct: 27  VLAGAGTGKTRAITYRIAYGAAVGAVDPSNVLAVTFTQRAAFEMRHRLAQL--------- 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
                 + K Q +  + + + + RH   T++  P
Sbjct: 78  -----GVPKAQARTFHSAALRQLRHFWPTVVGGP 106


>gi|294618098|ref|ZP_06697695.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679]
 gi|291595670|gb|EFF26966.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679]
          Length = 744

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81


>gi|207722204|ref|YP_002252641.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
          MolK2]
 gi|206587379|emb|CAQ17962.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
          MolK2]
          Length = 705

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++  
Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79


>gi|163732146|ref|ZP_02139592.1| UvrD/REP helicase [Roseobacter litoralis Och 149]
 gi|161394444|gb|EDQ18767.1| UvrD/REP helicase [Roseobacter litoralis Och 149]
          Length = 868

 Score = 38.9 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM +RV
Sbjct: 50 AGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFTNKAAREMKNRV 95


>gi|148285059|ref|YP_001249149.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong]
 gi|146740498|emb|CAM81056.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong]
          Length = 716

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT ++  R+  ++    A P  +L +T T  AA EM  RV EI    + +  
Sbjct: 25  VLAGAGTGKTRVITYRIAYIIDQFMASPEEILAVTFTNKAATEMQSRVAEITNNTTGIYI 84

Query: 95  EILSAEITKI 104
               A  TKI
Sbjct: 85  GTFHAIATKI 94


>gi|145629400|ref|ZP_01785198.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21]
 gi|144978243|gb|EDJ88007.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21]
          Length = 662

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 32/146 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  -AWSHLS-------------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
            A   L+             DE L+A    +        D+ +A H L    +      +
Sbjct: 80  DAIDKLTAFAKTQDKSAFKNDEFLTALCDNL--------DIFEAIHRLKLAEQNMDLAAI 131

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAI 159
            TIH FC  ++ Q+   + I  HF +
Sbjct: 132 YTIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|315452533|ref|YP_004072803.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
 gi|315131585|emb|CBY82213.1| putative ATP-dependent DNA helicase [Helicobacter felis ATCC
          49179]
          Length = 658

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q  SEQ+ A+        + A+AG+GKT  +V R++ LL     P  +L LT T  A+ E
Sbjct: 2  QLNSEQIQATQARLGRNLIIASAGTGKTSTIVGRIIHLLKQGISPHEILLLTFTNKASLE 61

Query: 78 MSHRV 82
          M  R+
Sbjct: 62 MKERL 66


>gi|293569138|ref|ZP_06680445.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071]
 gi|291588185|gb|EFF20026.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071]
          Length = 744

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81


>gi|289565872|ref|ZP_06446313.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF]
 gi|289162332|gb|EFD10191.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF]
          Length = 744

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81


>gi|260576875|ref|ZP_05844858.1| UvrD/REP helicase [Rhodobacter sp. SW2]
 gi|259020912|gb|EEW24225.1| UvrD/REP helicase [Rhodobacter sp. SW2]
          Length = 850

 Score = 38.9 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM  RV
Sbjct: 51 AGAGTGKTKALTARIVHLLTTGKARPNEILAVTFTNKAAREMKDRV 96


>gi|154502276|ref|ZP_02039336.1| hypothetical protein RUMGNA_00086 [Ruminococcus gnavus ATCC
          29149]
 gi|153797155|gb|EDN79575.1| hypothetical protein RUMGNA_00086 [Ruminococcus gnavus ATCC
          29149]
          Length = 625

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT +L  R+ +++   N  PS++L +T +K A   ++ +++E+
Sbjct: 20 VIATAGSGKTTVLTHRIKKMVEEHNILPSSILAITFSKKAKENINEKLMEL 70


>gi|146328|gb|AAA23952.1| helicase IV [Escherichia coli]
          Length = 684

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|83954004|ref|ZP_00962725.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841949|gb|EAP81118.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1]
          Length = 806

 Score = 38.9 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ L+    A P+ +L +T T  AA EM +RV
Sbjct: 50 AGAGTGKTKALTARIVHLMNTGRARPNEILAVTFTNKAAREMKNRV 95


>gi|127512196|ref|YP_001093393.1| UvrD/REP helicase [Shewanella loihica PV-4]
 gi|126637491|gb|ABO23134.1| UvrD/REP helicase [Shewanella loihica PV-4]
          Length = 678

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A + A  GSGKT  LV+RV RL+     P ++L L + K+A    S ++
Sbjct: 20 ALIKAVPGSGKTTTLVKRVERLIKTGVEPGSILILMYNKSATVSFSDKL 68


>gi|323491803|ref|ZP_08096978.1| DNA helicase IV [Vibrio brasiliensis LMG 20546]
 gi|323313938|gb|EGA67027.1| DNA helicase IV [Vibrio brasiliensis LMG 20546]
          Length = 688

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 12/69 (17%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  RV  LL ++ A P  +L L   + AA EM  R          L+D++
Sbjct: 219 AGAGSGKTSVLTARVAYLLQSHIARPEEILMLAFGRDAADEMKQR----------LNDKV 268

Query: 97  -LSAEITKI 104
            LSAE  K+
Sbjct: 269 GLSAESVKV 277


>gi|310644241|ref|YP_003949000.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2]
 gi|309249192|gb|ADO58759.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2]
          Length = 774

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV ++I
Sbjct: 30 IMAGAGSGKTRVLTHRIAYLIATRKTAPWGILAITFTNKAAREMQDRVSKLI 81


>gi|54024515|ref|YP_118757.1| putative RecB protein [Nocardia farcinica IFM 10152]
 gi|54016023|dbj|BAD57393.1| putative RecB protein [Nocardia farcinica IFM 10152]
          Length = 1113

 Score = 38.5 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A+AG+GKTH +V   +R +  A    + LL +T ++AA  E+  R  +   A
Sbjct: 24  PRGTTVLEASAGTGKTHAIVGLAVRYVAEAGVRIAELLLVTFSRAATQELRERARDRFVA 83

Query: 89  WSHLSDEILSAEITKIQGKK-------PNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              ++  +   +  +  G +        + ++++  R  L+T L       + T H+FC+
Sbjct: 84  ---VAAALADPDSARAAGDELIAHLAAADDTEVALRRTRLLTALSDFDAGTIATTHSFCQ 140

Query: 142 AIMQQFPL 149
            ++ +  L
Sbjct: 141 RMLDELGL 148


>gi|300702548|ref|YP_003744148.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
 gi|299070209|emb|CBJ41500.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
          Length = 705

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++  
Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79


>gi|293571853|ref|ZP_06682869.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
 gi|291608107|gb|EFF37413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
          Length = 744

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81


>gi|257126540|ref|YP_003164654.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
 gi|257050479|gb|ACV39663.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
          Length = 1049

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII--T 87
            T +  + A+AG+GKT+ L    +  L+   +   ++ +T TK A AE+  R+ + +   
Sbjct: 2   KTNNIILKASAGTGKTYRLSLEFIANLIRGVNYKNIVVMTFTKKATAEIKERIYDFLHQI 61

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           A+   +   L   + +I   K +  +  + +++   +++    +++ TI  F   I + 
Sbjct: 62  AFDEGNGTELEKNLKEIY--KFDNLNKKELQNIYFEMIKNKEDIRISTIDGFTNQIFKN 118


>gi|197105764|ref|YP_002131141.1| DNA helicase II [Phenylobacterium zucineum HLK1]
 gi|196479184|gb|ACG78712.1| DNA helicase II [Phenylobacterium zucineum HLK1]
          Length = 774

 Score = 38.5 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT +L  R+  +L    A P  LL +T T  AA EM  R+  +I
Sbjct: 47 VLAGAGTGKTRVLTTRLAHILATGKARPWELLAVTFTNKAAREMRERISHMI 98


>gi|32266430|ref|NP_860462.1| ATP-dependent DNA helicase [Helicobacter hepaticus ATCC 51449]
 gi|32262480|gb|AAP77528.1| ATP-dependent DNA helicase [Helicobacter hepaticus ATCC 51449]
          Length = 676

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +SQ  ++Q  A+  +     + A+AG+GKT  +V R+  LL     P  +L LT T  A+
Sbjct: 3  LSQLNAQQAEAATASSGHNLIIASAGTGKTATIVGRIAYLLNQGYAPQDILLLTFTNKAS 62

Query: 76 AEMSHRVLEII 86
          +EM  R+ +I 
Sbjct: 63 SEMLARIGKIF 73


>gi|83747407|ref|ZP_00944446.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551]
 gi|207744777|ref|YP_002261169.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
          IPO1609]
 gi|83725864|gb|EAP73003.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551]
 gi|206596187|emb|CAQ63114.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
          IPO1609]
          Length = 705

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++  
Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79


>gi|257458469|ref|ZP_05623609.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580]
 gi|257444170|gb|EEV19273.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580]
          Length = 809

 Score = 38.5 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 41/163 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           ET   +S    EQL A   T S   + A AGSGKT ++  ++  L+      P ++L +T
Sbjct: 3   ETCKYLSVLNPEQLEAVCHTGSPLLILAGAGSGKTRVITTKIAWLIAEQGVRPESILAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM+ R   +                           D   AR +         
Sbjct: 63  FTNKAAREMAERARVL---------------------------DERTARSV--------- 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
              ++T H+F   +++++   A ++ +F I D+E S  L+ +A
Sbjct: 87  ---IRTFHSFGAWMLRRYAEWAGLSPNFTIYDDEDSVTLLMKA 126


>gi|228937586|ref|ZP_04100224.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228970473|ref|ZP_04131124.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228977042|ref|ZP_04137445.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407]
 gi|228782659|gb|EEM30834.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407]
 gi|228789205|gb|EEM37133.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228822067|gb|EEM68057.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|326938079|gb|AEA13975.1| DNA helicase II [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 753

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+ +++
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 83


>gi|260582454|ref|ZP_05850245.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae NT127]
 gi|260094434|gb|EEW78331.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae NT127]
          Length = 1211

 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 26/143 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEILSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQTI 136
                + + L+A   K Q K   K+           D+ +A H L    +      + TI
Sbjct: 80  D----AIDKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTI 134

Query: 137 HAFCEAIMQQFPLEANITSHFAI 159
           H FC  ++ Q+   + I  HF +
Sbjct: 135 HGFCRRMLMQYAFHSGI--HFNL 155


>gi|227551669|ref|ZP_03981718.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330]
 gi|257895731|ref|ZP_05675384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12]
 gi|227179232|gb|EEI60204.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330]
 gi|257832296|gb|EEV58717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12]
          Length = 747

 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84


>gi|225023329|ref|ZP_03712521.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC
           23834]
 gi|224943974|gb|EEG25183.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC
           23834]
          Length = 1241

 Score = 38.5 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHR------- 81
           P  +  V A+AG+GKT+ +     RL +L    P  +L +T T+AA AE+ +R       
Sbjct: 13  PQGTHLVEASAGTGKTYSIAALFTRLVVLEGWAPENILVVTFTEAATAELKNRLRARLGE 72

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           VL  + +    +DE L   + +   K+    + SK    L   L       + TIH FC 
Sbjct: 73  VLAALQSGETPADEFLQHLLAEALAKQ----ERSKLILQLQAALSGFDTAAIYTIHGFCL 128

Query: 142 AIMQQF 147
            ++  +
Sbjct: 129 RVLGDY 134


>gi|239825841|ref|YP_002948465.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70]
 gi|239806134|gb|ACS23199.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70]
          Length = 732

 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERV 76


>gi|123441896|ref|YP_001005879.1| DNA helicase IV [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088857|emb|CAL11663.1| putative helicase IV [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 4   HNSFQEHS---ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           H   +EH    ++++     +S+     +   S  V A AGSGKT +LV R   LL  N 
Sbjct: 179 HRMLEEHQDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNE 238

Query: 60  AHPSTLLCLTHTKAAAAEMSHRV 82
           A P  +L L   + AA EM+ R+
Sbjct: 239 ALPEQILLLAFGRQAADEMNSRI 261


>gi|92115386|ref|YP_575314.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM
          3043]
 gi|91798476|gb|ABE60615.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM
          3043]
          Length = 739

 Score = 38.5 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
          L S   +++   S P  +  V A AGSGKT +LV R+  L+ +    P  +L +T T  A
Sbjct: 13 LDSLNTAQREAVSHPQGNLLVLAGAGSGKTRVLVHRIAWLMQVEGLSPYAILAVTFTNKA 72

Query: 75 AAEMSHRV 82
          A EM  R+
Sbjct: 73 AREMRTRL 80


>gi|148263902|ref|YP_001230608.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
 gi|146397402|gb|ABQ26035.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
          Length = 620

 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A  GSGKT +L +R+ RLL        +L LT T  AA EM  R+ ++
Sbjct: 23 VIAGPGSGKTRVLTERIRRLLTVIPGHFRVLALTFTNKAANEMKERLSDL 72


>gi|304321353|ref|YP_003854996.1| DNA helicase II [Parvularcula bermudensis HTCC2503]
 gi|303300255|gb|ADM09854.1| DNA helicase II [Parvularcula bermudensis HTCC2503]
          Length = 775

 Score = 38.5 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R+  LL++  A+P  LL +T T  AA EM  RV
Sbjct: 45 AGAGTGKTRALTTRLAHLLISGRANPWDLLAVTFTNKAAREMRERV 90


>gi|329914689|ref|ZP_08276145.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545085|gb|EGF30383.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 692

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 37/137 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+    + P  +  LT T  AA EM  R+ +++        
Sbjct: 36  VLAGAGSGKTRVITQKIAHLIEDRGYEPKHIAALTFTNKAALEMQERIAKLL-------- 87

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                       K+P ++                  L V T H+    I++Q   +  + 
Sbjct: 88  ------------KQPRQAKQ----------------LTVSTFHSLGVKILRQEARQLGLK 119

Query: 155 SHFAIADEEQSKKLIEE 171
             F+I D +    L+++
Sbjct: 120 DRFSIMDSDDCFSLVQD 136


>gi|315037777|ref|YP_004031345.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112]
 gi|312275910|gb|ADQ58550.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112]
          Length = 748

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAATEMRER 73


>gi|312139063|ref|YP_004006399.1| exodeoxyribonuclease v beta subunit recb [Rhodococcus equi 103S]
 gi|311888402|emb|CBH47714.1| exodeoxyribonuclease V beta subunit RecB [Rhodococcus equi 103S]
          Length = 1103

 Score = 38.5 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 15/164 (9%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL 83
           L A  P  +  + A+AG+GKT+ +V    R +   +   S LL +T ++AA  E+  R  
Sbjct: 14  LFAPLPQGTTVLEASAGTGKTYAIVGLAARFVAEEDVDLSQLLLVTFSRAATKELRERTR 73

Query: 84  E-IITAWSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           E   +A + L+D I    S +         + ++++  R  L+  L       + T H+F
Sbjct: 74  ERFASAAAGLADPIAARASEDPLVAHLADTDDAEIALRRRRLMQALSDFDAGTIVTTHSF 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           C+ ++              IA E     ++ E  +  +A ++ D
Sbjct: 134 CQRMLDG----------LGIAGERDPDAVLVEEAEDLVAEVIAD 167


>gi|307719793|ref|YP_003875325.1| DNA helicase [Spirochaeta thermophila DSM 6192]
 gi|306533518|gb|ADN03052.1| DNA helicase [Spirochaeta thermophila DSM 6192]
          Length = 683

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 40/133 (30%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  ++  L+ A   P+ ++L +T T  AA EM  R L++           
Sbjct: 29  AGAGSGKTRVITTKIAYLVDALGIPARSILAVTFTNKAAREMYERALQL----------- 77

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                       P                    G+ ++T H+F   +++ +     +   
Sbjct: 78  -----------SPRTE-----------------GVMIKTFHSFGAWLLRLYGERLGLARD 109

Query: 157 FAIADEEQSKKLI 169
           FAI D+E ++ L+
Sbjct: 110 FAIYDDEDARALL 122


>gi|257884411|ref|ZP_05664064.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501]
 gi|257887195|ref|ZP_05666848.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733]
 gi|257820249|gb|EEV47397.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501]
 gi|257823249|gb|EEV50181.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733]
          Length = 747

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84


>gi|257878463|ref|ZP_05658116.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933]
 gi|257882882|ref|ZP_05662535.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502]
 gi|257889340|ref|ZP_05668993.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410]
 gi|257894352|ref|ZP_05674005.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408]
 gi|260560050|ref|ZP_05832228.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68]
 gi|314937828|ref|ZP_07845145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04]
 gi|314941626|ref|ZP_07848506.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C]
 gi|314948873|ref|ZP_07852242.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082]
 gi|314951009|ref|ZP_07854076.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A]
 gi|314993010|ref|ZP_07858406.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B]
 gi|314996457|ref|ZP_07861500.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01]
 gi|257812691|gb|EEV41449.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933]
 gi|257818540|gb|EEV45868.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502]
 gi|257825700|gb|EEV52326.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410]
 gi|257830731|gb|EEV57338.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408]
 gi|260073885|gb|EEW62209.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68]
 gi|313589439|gb|EFR68284.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01]
 gi|313592533|gb|EFR71378.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B]
 gi|313596864|gb|EFR75709.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A]
 gi|313599517|gb|EFR78360.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C]
 gi|313642859|gb|EFS07439.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04]
 gi|313644663|gb|EFS09243.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082]
          Length = 747

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84


>gi|229009788|ref|ZP_04167008.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048]
 gi|228751406|gb|EEM01212.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048]
          Length = 743

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+ +++
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 79


>gi|156743315|ref|YP_001433444.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156234643|gb|ABU59426.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 659

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
          + L++    +Q  A + P     V A AGSGKT +L  R+  L+      PS +L LT T
Sbjct: 6  MSLLASLNPKQYTAVTAPPGPILVRAGAGSGKTRVLTLRIAYLIAECGVSPSHILALTFT 65

Query: 72 KAAAAEMSHRV 82
            AA EM  R+
Sbjct: 66 NKAAREMRQRL 76


>gi|325956252|ref|YP_004286862.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC]
 gi|325332817|gb|ADZ06725.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC]
 gi|327183068|gb|AEA31515.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1118]
          Length = 748

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAATEMRER 73


>gi|120603850|ref|YP_968250.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120564079|gb|ABM29823.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 719

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT  +V R+  LL      S++L LT T+ AA EM  R
Sbjct: 25 VIAGAGSGKTRTVVYRLANLLERGVPASSILLLTFTRKAANEMLQR 70


>gi|89901806|ref|YP_524277.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89346543|gb|ABD70746.1| ATP-dependent DNA helicase UvrD [Rhodoferax ferrireducens T118]
          Length = 814

 Score = 38.5 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          L+     EQ  A + P   A + A AGSGKT +L  R+  LL      P  +L +T T  
Sbjct: 27 LLQHLNPEQRAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQTGQVTPGGVLAVTFTNK 86

Query: 74 AAAEMSHRVLEII 86
          AA EM  R+  ++
Sbjct: 87 AAKEMMTRLSSML 99


>gi|82544714|ref|YP_408661.1| DNA helicase IV [Shigella boydii Sb227]
 gi|81246125|gb|ABB66833.1| DNA helicase IV [Shigella boydii Sb227]
 gi|332093340|gb|EGI98398.1| helicase IV [Shigella boydii 3594-74]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|83942766|ref|ZP_00955227.1| DNA helicase II, putative [Sulfitobacter sp. EE-36]
 gi|83846859|gb|EAP84735.1| DNA helicase II, putative [Sulfitobacter sp. EE-36]
          Length = 806

 Score = 38.5 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ L+    A P+ +L +T T  AA EM +RV
Sbjct: 50 AGAGTGKTKALTARIVHLMNTGRARPNEILAVTFTNKAAREMKNRV 95


>gi|145638900|ref|ZP_01794508.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittII]
 gi|145271872|gb|EDK11781.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittII]
 gi|309750876|gb|ADO80860.1| Exodeoxyribonuclease V, beta subunit [Haemophilus influenzae R2866]
          Length = 1211

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134
                 D I  L+A   K Q K   K+           D+ +A H L    +      + 
Sbjct: 80  ------DAIDKLTA-FAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIY 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159
           TIH FC  ++ Q+   + I  HF +
Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|323973162|gb|EGB68354.1| UvrD/REP helicase [Escherichia coli TA007]
          Length = 673

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|320096305|ref|ZP_08027873.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976764|gb|EFW08537.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 436

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 24/125 (19%)

Query: 14  IDLISQTKSEQLLASDPTRSA---------WVSANAGSGKTHILVQRVLRLLLANA-HPS 63
           I  +S + +E L A DP + A          V A AG+GKT  +  R+       A  PS
Sbjct: 2   IRTMSLSPNELLDALDPDQRAVATQVAGPLAVLAGAGTGKTRAITYRIAYGAAVGAFDPS 61

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T TK AA EM HR+  +               + + Q +  + + + + RH   T
Sbjct: 62  NVLAVTFTKRAAYEMRHRLAAL--------------GVPRAQARTFHSAALRQLRHFWPT 107

Query: 124 ILETP 128
           ++  P
Sbjct: 108 VVGGP 112


>gi|289607095|emb|CBI60889.1| unnamed protein product [Sordaria macrospora]
          Length = 111

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
          +++ + + +L +D      V A AG+GKT  L  R+  LL    A+PS +L +T T  AA
Sbjct: 16 LNEPQRDAVLTTD--GPVLVLAGAGTGKTAALTARLAHLLYTRKAYPSEILSVTFTNKAA 73

Query: 76 AEMSHRVLEII 86
           EM  RV  ++
Sbjct: 74 REMRERVGRLV 84


>gi|258616015|ref|ZP_05713785.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO]
          Length = 706

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +  
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGG 83


>gi|257898302|ref|ZP_05677955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15]
 gi|257836214|gb|EEV61288.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15]
          Length = 748

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84


>gi|254470528|ref|ZP_05083932.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062]
 gi|211960839|gb|EEA96035.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062]
          Length = 812

 Score = 38.5 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 22  SEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79
           +EQ LA +       V A AG+GKT +L  R+  +L   +A P  +L +T T  AA EM 
Sbjct: 51  AEQRLAVETINGPVLVLAGAGTGKTRVLTTRIAHILATGHATPGQILAVTFTNKAAREMK 110

Query: 80  HRV 82
            R+
Sbjct: 111 ERI 113


>gi|330827920|ref|YP_004390872.1| exodeoxyribonuclease V subunit beta [Aeromonas veronii B565]
 gi|328803056|gb|AEB48255.1| Exodeoxyribonuclease V, beta subunit [Aeromonas veronii B565]
          Length = 1199

 Score = 38.5 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 32/141 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN----------AHPST---------LLCLTHTKAAAA 76
           + A+AG+GKT+ +    LRLLL +            PS          +L +T T+AA A
Sbjct: 18  IEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAATA 77

Query: 77  EMSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           E+  R+        +     H SD +L+  + +++       D   A   L+        
Sbjct: 78  ELRGRIRGRIHEARLAFMRGHSSDTLLAQLLAEVE-------DHELAARRLLAAERQMDE 130

Query: 131 LKVQTIHAFCEAIMQQFPLEA 151
             V TIH FC+ +++Q   E+
Sbjct: 131 AAVFTIHGFCQRMLKQNAFES 151


>gi|307708679|ref|ZP_07645142.1| recombination helicase AddA [Streptococcus mitis NCTC 12261]
 gi|307615253|gb|EFN94463.1| recombination helicase AddA [Streptococcus mitis NCTC 12261]
          Length = 1216

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMAERILDQLARGIEISQLFISTFTVKAATELKERL 91


>gi|261207461|ref|ZP_05922147.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6]
 gi|260078352|gb|EEW66057.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6]
          Length = 747

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84


>gi|256018779|ref|ZP_05432644.1| DNA helicase IV [Shigella sp. D9]
 gi|300824148|ref|ZP_07104267.1| UvrD/REP helicase [Escherichia coli MS 119-7]
 gi|331667345|ref|ZP_08368210.1| helicase IV (75 kDa helicase) [Escherichia coli TA271]
 gi|300523324|gb|EFK44393.1| UvrD/REP helicase [Escherichia coli MS 119-7]
 gi|331065701|gb|EGI37594.1| helicase IV (75 kDa helicase) [Escherichia coli TA271]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|91772773|ref|YP_565465.1| ATP-dependent DNA helicase Rep [Methanococcoides burtonii DSM
          6242]
 gi|91711788|gb|ABE51715.1| DNA helicase, ATP dependent [Methanococcoides burtonii DSM 6242]
          Length = 587

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          +V A+AGSGKT +L +RV R LL   +   +L LT T  A  E+  R+ +I
Sbjct: 23 YVKASAGSGKTRVLTERV-RYLLDKTN-KKVLALTFTNKAGEEIKERLSDI 71


>gi|191166604|ref|ZP_03028433.1| helicase IV [Escherichia coli B7A]
 gi|260854254|ref|YP_003228145.1| DNA helicase IV [Escherichia coli O26:H11 str. 11368]
 gi|260867133|ref|YP_003233535.1| DNA helicase IV [Escherichia coli O111:H- str. 11128]
 gi|190903409|gb|EDV63129.1| helicase IV [Escherichia coli B7A]
 gi|257752903|dbj|BAI24405.1| DNA helicase IV [Escherichia coli O26:H11 str. 11368]
 gi|257763489|dbj|BAI34984.1| DNA helicase IV [Escherichia coli O111:H- str. 11128]
 gi|323175411|gb|EFZ61006.1| helicase IV [Escherichia coli 1180]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|157155618|ref|YP_001462195.1| DNA helicase IV [Escherichia coli E24377A]
 gi|193066692|ref|ZP_03047722.1| helicase IV [Escherichia coli E22]
 gi|194430210|ref|ZP_03062709.1| helicase IV [Escherichia coli B171]
 gi|260843211|ref|YP_003220989.1| DNA helicase IV [Escherichia coli O103:H2 str. 12009]
 gi|293433259|ref|ZP_06661687.1| DNA helicase IV [Escherichia coli B088]
 gi|157077648|gb|ABV17356.1| helicase IV [Escherichia coli E24377A]
 gi|192925661|gb|EDV80325.1| helicase IV [Escherichia coli E22]
 gi|194411746|gb|EDX28069.1| helicase IV [Escherichia coli B171]
 gi|257758358|dbj|BAI29855.1| DNA helicase IV [Escherichia coli O103:H2 str. 12009]
 gi|291324078|gb|EFE63500.1| DNA helicase IV [Escherichia coli B088]
 gi|320200191|gb|EFW74779.1| DNA helicase IV [Escherichia coli EC4100B]
 gi|323159593|gb|EFZ45573.1| helicase IV [Escherichia coli E128010]
 gi|323185327|gb|EFZ70691.1| helicase IV [Escherichia coli 1357]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|320196549|gb|EFW71172.1| DNA helicase IV [Escherichia coli WV_060327]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|307311651|ref|ZP_07591291.1| UvrD/REP helicase [Escherichia coli W]
 gi|306908206|gb|EFN38705.1| UvrD/REP helicase [Escherichia coli W]
 gi|315060247|gb|ADT74574.1| DNA helicase IV [Escherichia coli W]
 gi|323379193|gb|ADX51461.1| UvrD/REP helicase [Escherichia coli KO11]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|251788839|ref|YP_003003560.1| DNA helicase IV [Dickeya zeae Ech1591]
 gi|247537460|gb|ACT06081.1| UvrD/REP helicase [Dickeya zeae Ech1591]
          Length = 685

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL  A A P  +L L   + AA EM+ R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAAWLLHRAEASPEQILLLAFGRQAADEMNGRIHE 263


>gi|238762127|ref|ZP_04623099.1| Helicase IV (75 kDa helicase) [Yersinia kristensenii ATCC 33638]
 gi|238699474|gb|EEP92219.1| Helicase IV (75 kDa helicase) [Yersinia kristensenii ATCC 33638]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 4   HNSFQEHS---ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           H   +EH    ++++     +S+     +   S  V A AGSGKT +LV R   LL  N 
Sbjct: 179 HRMLEEHQDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNE 238

Query: 60  AHPSTLLCLTHTKAAAAEMSHRV 82
           A P  +L L   + AA EM+ R+
Sbjct: 239 ALPEQILLLAFGRQAADEMNSRI 261


>gi|254432659|ref|ZP_05046362.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001]
 gi|197627112|gb|EDY39671.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001]
          Length = 1248

 Score = 38.5 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 22/131 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE-IITAWSHLS 93
           + A+AG+GKT  L   VLR +     P   LL +T T AAAAE+  R+ + + TA  HL 
Sbjct: 19  LEASAGTGKTFSLAHLVLRYVSEAEVPLRQLLVVTFTNAAAAELRDRIGQRLQTALGHLD 78

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHL-------------LITILETPGGLKVQTIHAFC 140
               + E         N  D S    L             L+  LE   G  + TIH FC
Sbjct: 79  RGEAAVETG-------NPVDPSLEAWLQWARPRAALLRAPLLLALEDLDGADITTIHGFC 131

Query: 141 EAIMQQFPLEA 151
              +Q+  LEA
Sbjct: 132 LRTLQRQALEA 142


>gi|193070024|ref|ZP_03050971.1| helicase IV [Escherichia coli E110019]
 gi|209918215|ref|YP_002292299.1| DNA helicase IV [Escherichia coli SE11]
 gi|218553549|ref|YP_002386462.1| DNA helicase IV [Escherichia coli IAI1]
 gi|218694437|ref|YP_002402104.1| DNA helicase IV [Escherichia coli 55989]
 gi|192956621|gb|EDV87077.1| helicase IV [Escherichia coli E110019]
 gi|209911474|dbj|BAG76548.1| DNA helicase IV [Escherichia coli SE11]
 gi|218351169|emb|CAU96873.1| DNA helicase IV [Escherichia coli 55989]
 gi|218360317|emb|CAQ97867.1| DNA helicase IV [Escherichia coli IAI1]
 gi|324117174|gb|EGC11082.1| UvrD/REP helicase [Escherichia coli E1167]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|74311519|ref|YP_309938.1| DNA helicase IV [Shigella sonnei Ss046]
 gi|187731377|ref|YP_001880839.1| DNA helicase IV [Shigella boydii CDC 3083-94]
 gi|73854996|gb|AAZ87703.1| DNA helicase IV [Shigella sonnei Ss046]
 gi|187428369|gb|ACD07643.1| helicase IV [Shigella boydii CDC 3083-94]
 gi|320187172|gb|EFW61873.1| DNA helicase IV [Shigella flexneri CDC 796-83]
 gi|323165442|gb|EFZ51229.1| helicase IV [Shigella sonnei 53G]
 gi|323174930|gb|EFZ60545.1| helicase IV [Escherichia coli LT-68]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|16128929|ref|NP_415482.1| DNA helicase IV [Escherichia coli str. K-12 substr. MG1655]
 gi|89107812|ref|AP_001592.1| DNA helicase IV [Escherichia coli str. K-12 substr. W3110]
 gi|157160483|ref|YP_001457801.1| DNA helicase IV [Escherichia coli HS]
 gi|170080620|ref|YP_001729940.1| DNA helicase IV [Escherichia coli str. K-12 substr. DH10B]
 gi|188495557|ref|ZP_03002827.1| helicase IV [Escherichia coli 53638]
 gi|194440051|ref|ZP_03072107.1| helicase IV [Escherichia coli 101-1]
 gi|238900220|ref|YP_002926016.1| DNA helicase IV [Escherichia coli BW2952]
 gi|253774008|ref|YP_003036839.1| DNA helicase IV [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161076|ref|YP_003044184.1| DNA helicase IV [Escherichia coli B str. REL606]
 gi|256023336|ref|ZP_05437201.1| DNA helicase IV [Escherichia sp. 4_1_40B]
 gi|293414242|ref|ZP_06656891.1| helicase IV [Escherichia coli B185]
 gi|301022514|ref|ZP_07186389.1| UvrD/REP helicase [Escherichia coli MS 196-1]
 gi|307137592|ref|ZP_07496948.1| DNA helicase IV [Escherichia coli H736]
 gi|2506500|sp|P15038|HELD_ECOLI RecName: Full=Helicase IV; AltName: Full=75 kDa helicase
 gi|1651471|dbj|BAA35727.1| DNA helicase IV [Escherichia coli str. K12 substr. W3110]
 gi|1787196|gb|AAC74048.1| DNA helicase IV [Escherichia coli str. K-12 substr. MG1655]
 gi|157066163|gb|ABV05418.1| helicase IV [Escherichia coli HS]
 gi|169888455|gb|ACB02162.1| DNA helicase IV [Escherichia coli str. K-12 substr. DH10B]
 gi|188490756|gb|EDU65859.1| helicase IV [Escherichia coli 53638]
 gi|194421015|gb|EDX37046.1| helicase IV [Escherichia coli 101-1]
 gi|238860821|gb|ACR62819.1| DNA helicase IV [Escherichia coli BW2952]
 gi|242376777|emb|CAQ31490.1| DNA helicase IV [Escherichia coli BL21(DE3)]
 gi|253325052|gb|ACT29654.1| UvrD/REP helicase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972977|gb|ACT38648.1| DNA helicase IV [Escherichia coli B str. REL606]
 gi|253977191|gb|ACT42861.1| DNA helicase IV [Escherichia coli BL21(DE3)]
 gi|260449892|gb|ACX40314.1| UvrD/REP helicase [Escherichia coli DH1]
 gi|291434300|gb|EFF07273.1| helicase IV [Escherichia coli B185]
 gi|299881211|gb|EFI89422.1| UvrD/REP helicase [Escherichia coli MS 196-1]
 gi|309701241|emb|CBJ00541.1| helicase IV [Escherichia coli ETEC H10407]
 gi|315135611|dbj|BAJ42770.1| DNA helicase IV [Escherichia coli DH1]
 gi|315619158|gb|EFU99738.1| helicase IV [Escherichia coli 3431]
 gi|323938067|gb|EGB34329.1| UvrD/REP helicase [Escherichia coli E1520]
 gi|323942877|gb|EGB39042.1| UvrD/REP helicase [Escherichia coli E482]
 gi|323962848|gb|EGB58423.1| UvrD/REP helicase [Escherichia coli H489]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|320175155|gb|EFW50265.1| DNA helicase IV [Shigella dysenteriae CDC 74-1112]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|281600327|gb|ADA73311.1| DNA helicase IV [Shigella flexneri 2002017]
          Length = 707

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 237 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 286


>gi|172035283|ref|YP_001801784.1| hypothetical protein cce_0367 [Cyanothece sp. ATCC 51142]
 gi|171696737|gb|ACB49718.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 572

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL---LITILETPGGLKVQTIHAFCEA 142
           +  WS+ SD IL+ E   IQG K   +D  +A  L    I  +    GL+    H F  A
Sbjct: 246 VIYWSYSSDRILTLEW--IQGYKLTDTDKIRAAGLDPYAIVKIGVTSGLRQLLEHGFFHA 303

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEILEIS 199
                 L A +    A  D     +L EE K++  +S++   N++   L + F ++  ++
Sbjct: 304 DPHPGNLFATLDGRMAFIDFGMMDQLEEETKETIASSVVQLINQDYDALARDFVKLGFLT 363

Query: 200 NDEDIETLIS 209
            D DIE +I 
Sbjct: 364 PDTDIEPIIP 373


>gi|110804978|ref|YP_688498.1| DNA helicase IV [Shigella flexneri 5 str. 8401]
 gi|110614526|gb|ABF03193.1| DNA helicase IV [Shigella flexneri 5 str. 8401]
          Length = 707

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 237 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 286


>gi|15800821|ref|NP_286837.1| DNA helicase IV [Escherichia coli O157:H7 EDL933]
 gi|15830300|ref|NP_309073.1| DNA helicase IV [Escherichia coli O157:H7 str. Sakai]
 gi|168751278|ref|ZP_02776300.1| helicase IV [Escherichia coli O157:H7 str. EC4113]
 gi|168758918|ref|ZP_02783925.1| helicase IV [Escherichia coli O157:H7 str. EC4401]
 gi|168765223|ref|ZP_02790230.1| helicase IV [Escherichia coli O157:H7 str. EC4501]
 gi|168777449|ref|ZP_02802456.1| helicase IV [Escherichia coli O157:H7 str. EC4196]
 gi|168780909|ref|ZP_02805916.1| helicase IV [Escherichia coli O157:H7 str. EC4076]
 gi|168787395|ref|ZP_02812402.1| helicase IV [Escherichia coli O157:H7 str. EC869]
 gi|168801336|ref|ZP_02826343.1| helicase IV [Escherichia coli O157:H7 str. EC508]
 gi|195935149|ref|ZP_03080531.1| DNA helicase IV [Escherichia coli O157:H7 str. EC4024]
 gi|208805656|ref|ZP_03247993.1| helicase IV [Escherichia coli O157:H7 str. EC4206]
 gi|208815646|ref|ZP_03256825.1| helicase IV [Escherichia coli O157:H7 str. EC4045]
 gi|209400242|ref|YP_002269630.1| helicase IV [Escherichia coli O157:H7 str. EC4115]
 gi|217324124|ref|ZP_03440208.1| helicase IV [Escherichia coli O157:H7 str. TW14588]
 gi|254792162|ref|YP_003076999.1| DNA helicase IV [Escherichia coli O157:H7 str. TW14359]
 gi|261227465|ref|ZP_05941746.1| DNA helicase IV [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256112|ref|ZP_05948645.1| DNA helicase IV [Escherichia coli O157:H7 str. FRIK966]
 gi|12514147|gb|AAG55448.1|AE005286_7 DNA helicase IV [Escherichia coli O157:H7 str. EDL933]
 gi|13360506|dbj|BAB34469.1| DNA helicase IV [Escherichia coli O157:H7 str. Sakai]
 gi|187767340|gb|EDU31184.1| helicase IV [Escherichia coli O157:H7 str. EC4196]
 gi|188014697|gb|EDU52819.1| helicase IV [Escherichia coli O157:H7 str. EC4113]
 gi|189001300|gb|EDU70286.1| helicase IV [Escherichia coli O157:H7 str. EC4076]
 gi|189354358|gb|EDU72777.1| helicase IV [Escherichia coli O157:H7 str. EC4401]
 gi|189364952|gb|EDU83368.1| helicase IV [Escherichia coli O157:H7 str. EC4501]
 gi|189372675|gb|EDU91091.1| helicase IV [Escherichia coli O157:H7 str. EC869]
 gi|189376521|gb|EDU94937.1| helicase IV [Escherichia coli O157:H7 str. EC508]
 gi|208725457|gb|EDZ75058.1| helicase IV [Escherichia coli O157:H7 str. EC4206]
 gi|208732294|gb|EDZ80982.1| helicase IV [Escherichia coli O157:H7 str. EC4045]
 gi|209161642|gb|ACI39075.1| helicase IV [Escherichia coli O157:H7 str. EC4115]
 gi|209774388|gb|ACI85506.1| DNA helicase IV [Escherichia coli]
 gi|209774390|gb|ACI85507.1| DNA helicase IV [Escherichia coli]
 gi|209774392|gb|ACI85508.1| DNA helicase IV [Escherichia coli]
 gi|209774396|gb|ACI85510.1| DNA helicase IV [Escherichia coli]
 gi|217320345|gb|EEC28769.1| helicase IV [Escherichia coli O157:H7 str. TW14588]
 gi|254591562|gb|ACT70923.1| DNA helicase IV [Escherichia coli O157:H7 str. TW14359]
 gi|320188698|gb|EFW63358.1| DNA helicase IV [Escherichia coli O157:H7 str. EC1212]
 gi|320637830|gb|EFX07622.1| DNA helicase IV [Escherichia coli O157:H7 str. G5101]
 gi|320642955|gb|EFX12156.1| DNA helicase IV [Escherichia coli O157:H- str. 493-89]
 gi|320648412|gb|EFX17067.1| DNA helicase IV [Escherichia coli O157:H- str. H 2687]
 gi|320653728|gb|EFX21802.1| DNA helicase IV [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320659571|gb|EFX27134.1| DNA helicase IV [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664342|gb|EFX31493.1| DNA helicase IV [Escherichia coli O157:H7 str. LSU-61]
 gi|326338892|gb|EGD62708.1| DNA helicase IV [Escherichia coli O157:H7 str. 1125]
 gi|326341711|gb|EGD65499.1| DNA helicase IV [Escherichia coli O157:H7 str. 1044]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|312971094|ref|ZP_07785273.1| helicase IV [Escherichia coli 1827-70]
 gi|310336855|gb|EFQ02022.1| helicase IV [Escherichia coli 1827-70]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|330910735|gb|EGH39245.1| DNA helicase 4 [Escherichia coli AA86]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|291281962|ref|YP_003498780.1| DNA helicase IV [Escherichia coli O55:H7 str. CB9615]
 gi|209774394|gb|ACI85509.1| DNA helicase IV [Escherichia coli]
 gi|290761835|gb|ADD55796.1| DNA helicase IV [Escherichia coli O55:H7 str. CB9615]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|170020637|ref|YP_001725591.1| DNA helicase IV [Escherichia coli ATCC 8739]
 gi|169755565|gb|ACA78264.1| UvrD/REP helicase [Escherichia coli ATCC 8739]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|91787605|ref|YP_548557.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666]
 gi|91696830|gb|ABE43659.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666]
          Length = 825

 Score = 38.5 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          P   A + A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 PNEHALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKAAKEMLARL 87


>gi|90579044|ref|ZP_01234854.1| hypothetical helicase IV [Vibrio angustum S14]
 gi|90439877|gb|EAS65058.1| hypothetical helicase IV [Vibrio angustum S14]
          Length = 693

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           V A AG+GKT +LV R   L+ +  A P  +L L   + AA EMS R+ E ++
Sbjct: 214 VLAGAGTGKTSVLVARAGYLIASQQAVPEDILMLAFGRKAAEEMSERMGEKVS 266


>gi|260577078|ref|ZP_05845057.1| UvrD/REP helicase [Rhodobacter sp. SW2]
 gi|259020748|gb|EEW24065.1| UvrD/REP helicase [Rhodobacter sp. SW2]
          Length = 959

 Score = 38.5 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 16/202 (7%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PS 63
           + +++  +TI+    T  ++L       +  V A AGSGKT ++  +   L+ A    P 
Sbjct: 165 DRWKDFFDTIESKPLTPEQRLSIVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRRPE 224

Query: 64  TLLCLTHTKAAAAEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            +L L   K AAAEMS RV     + I+    H    I    I  ++G KP  +D +   
Sbjct: 225 EILLLAFAKNAAAEMSERVEARSGVPIVARTFH---AIAYDIIGIVEGSKPALADHATDD 281

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
                +++      V++  A  +AI+Q F       +HF +  + +     +    + + 
Sbjct: 282 LAFTNLIKQILKDLVRSQSAVSKAIIQWF-------AHFLVEPKTEWDFNTKHEFYTHME 334

Query: 179 SIMLDNNEELKKAFYEILEISN 200
           S  L   +  K   YE L+I+N
Sbjct: 335 SQDLRTLQGEKVKSYEELQIAN 356


>gi|229847430|ref|ZP_04467530.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1]
 gi|229809668|gb|EEP45394.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1]
          Length = 671

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T S  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|215486080|ref|YP_002328511.1| DNA helicase IV [Escherichia coli O127:H6 str. E2348/69]
 gi|312968979|ref|ZP_07783186.1| helicase IV [Escherichia coli 2362-75]
 gi|215264152|emb|CAS08496.1| DNA helicase IV [Escherichia coli O127:H6 str. E2348/69]
 gi|312286381|gb|EFR14294.1| helicase IV [Escherichia coli 2362-75]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|68249990|ref|YP_249102.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 86-028NP]
 gi|68058189|gb|AAX88442.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 86-028NP]
          Length = 1211

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 32/146 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  -AWSHLS-------------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
            A + L+             DE L+A    +        D+ +A H L    +      +
Sbjct: 80  DAINKLTAFAKTQDKSAFKNDEFLTALCDNL--------DIFEAIHRLKLAEQNMDLAAI 131

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAI 159
            TIH FC  ++ Q+   + I  HF +
Sbjct: 132 YTIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|16273231|ref|NP_439472.1| exodeoxyribonuclease V subunit beta [Haemophilus influenzae Rd
           KW20]
 gi|260581332|ref|ZP_05849148.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae RdAW]
 gi|1169572|sp|P45157|EX5B_HAEIN RecName: Full=Exodeoxyribonuclease V beta chain
 gi|1574781|gb|AAC22966.1| exodeoxyribonuclease V, beta chain (recB) [Haemophilus influenzae
           Rd KW20]
 gi|260091999|gb|EEW75946.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae RdAW]
          Length = 1211

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEI--LSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGGLKVQ 134
                 D I  L+A   K Q K   K+D           + +A H L    +      + 
Sbjct: 80  ------DAINKLTA-FAKTQDKSAFKNDEFLTALCDNLNIFEAIHRLKLAEQNMDLAAIY 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159
           TIH FC  ++ Q+   + I  HF +
Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|332171051|gb|AEE20306.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 689

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  +V R   L+ +   P  +  LT TK AA+E+  RV
Sbjct: 32 AGAGTGKTKTIVGRAEYLIQSGVRPEKIQILTFTKRAASEIVERV 76


>gi|320178594|gb|EFW53559.1| DNA helicase IV [Shigella boydii ATCC 9905]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|315224086|ref|ZP_07865926.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287]
 gi|314945819|gb|EFS97828.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287]
          Length = 789

 Score = 38.5 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+  ++
Sbjct: 28 VIAGAGSGKTRVLTYRIANLMREGVDAFNILALTFTNKAANEMKKRIASLV 78


>gi|300819206|ref|ZP_07099407.1| UvrD/REP helicase [Escherichia coli MS 107-1]
 gi|300925355|ref|ZP_07141242.1| UvrD/REP helicase [Escherichia coli MS 182-1]
 gi|301327207|ref|ZP_07220469.1| UvrD/REP helicase [Escherichia coli MS 78-1]
 gi|300418522|gb|EFK01833.1| UvrD/REP helicase [Escherichia coli MS 182-1]
 gi|300528225|gb|EFK49287.1| UvrD/REP helicase [Escherichia coli MS 107-1]
 gi|300846188|gb|EFK73948.1| UvrD/REP helicase [Escherichia coli MS 78-1]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|281178086|dbj|BAI54416.1| DNA helicase IV [Escherichia coli SE15]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|237747303|ref|ZP_04577783.1| rep helicase [Oxalobacter formigenes HOxBLS]
 gi|229378654|gb|EEO28745.1| rep helicase [Oxalobacter formigenes HOxBLS]
          Length = 687

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 37/137 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+ +  + +  +  LT T  AAAEM  R+  +++       
Sbjct: 26  VLAGAGSGKTRVITQKIAHLIGSGQYEARHIAALTFTNKAAAEMQERISRLLS------- 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                            +D S+              L + T H+    I++Q   E N+ 
Sbjct: 79  ---------------EPADASQ--------------LTISTFHSLGVKILRQEAKELNLK 109

Query: 155 SHFAIADEEQSKKLIEE 171
             F+I D +    L+++
Sbjct: 110 DRFSILDSDDCFSLVQD 126


>gi|256820896|ref|YP_003142175.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
 gi|256582479|gb|ACU93614.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
          Length = 789

 Score = 38.5 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+  ++
Sbjct: 28 VIAGAGSGKTRVLTYRIANLMREGVDAFNILALTFTNKAANEMKKRIASLV 78


>gi|170681833|ref|YP_001744207.1| DNA helicase IV [Escherichia coli SMS-3-5]
 gi|170519551|gb|ACB17729.1| helicase IV [Escherichia coli SMS-3-5]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|153931653|ref|YP_001383067.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934674|ref|YP_001386616.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. Hall]
 gi|152927697|gb|ABS33197.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930588|gb|ABS36087.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. Hall]
          Length = 884

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 41/152 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D+IS     Q  A   T     V A AGSGKT  L  R + L+       + +LC T T
Sbjct: 3   LDVISGLNDAQREAVTTTEGYIRVIAGAGSGKTKALTSRYIYLVHELGISTANILCATFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +I                                       +   GL
Sbjct: 63  NKAAREMKKRIRTMIG--------------------------------------DNDTGL 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
            + T H FC  ++++     N   +F + D E
Sbjct: 85  -IGTFHGFCRRLLKEDIYTINYPDNFIVMDNE 115


>gi|118443009|ref|YP_878906.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT]
 gi|118133465|gb|ABK60509.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT]
          Length = 760

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87
          V A AGSGKT +L  R+  ++     P   +L +T T  AA EM  R+ ++++
Sbjct: 24 VLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFTNKAAGEMKDRIKKLVS 76


>gi|118380928|ref|XP_001023626.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89305393|gb|EAS03381.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1203

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 22/163 (13%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           ++ SD  ++  + A AGSGKT  L+ RV  L+     P  ++  T    AA  ++ +  +
Sbjct: 19  IVYSDINQNQKIEACAGSGKTTTLIYRVKYLINNKIKPQKIILTTFNIEAAKNLNKKAKQ 78

Query: 85  IITAWSHLSDEILSAE------------ITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           ++      + +I++ +            I     KK  K  ++    L++  L +  G K
Sbjct: 79  VLETKDQTNLKIVNIDKFIYEIYESNLKINDPLQKKYIKQSLTYISSLVLKYLSSDQGRK 138

Query: 133 V--QTIHAFCEAIMQQFPLEANITSHF--------AIADEEQS 165
           +  Q  H F +       ++ NI   F        AI DE Q+
Sbjct: 139 ILNQYSHFFFDEFQDINDIQYNILMQFCKNNCKIIAIGDEAQN 181


>gi|78189378|ref|YP_379716.1| DNA helicase II [Chlorobium chlorochromatii CaD3]
 gi|78171577|gb|ABB28673.1| ATP-dependent DNA helicase PcrA [Chlorobium chlorochromatii CaD3]
          Length = 743

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  R+  L+      P  +L LT T  AA EM  RV
Sbjct: 25 VLAGAGSGKTRVITYRIAHLINNEGIAPRNILALTFTNKAAGEMRERV 72


>gi|331651986|ref|ZP_08353005.1| helicase IV (75 kDa helicase) [Escherichia coli M718]
 gi|331050264|gb|EGI22322.1| helicase IV (75 kDa helicase) [Escherichia coli M718]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|315181034|gb|ADT87948.1| exodeoxyribonuclease V, beta subunit [Vibrio furnissii NCTC 11218]
          Length = 1214

 Score = 38.5 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-----HPSTL-----LCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +      H S L     L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTFTIAGLYLRLLLGHGSEHTRHASALTVDQILVVTFTEAATAELRDRIRAR 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I   + L+     ++   IQ       D   A  LL+          V TIH FC+ ++ 
Sbjct: 85  IHD-ARLAFSRGKSDDPVIQPLLAEFVDHPLATRLLLNAERQMDEAAVYTIHGFCQRMLT 143

Query: 146 QFPLEA 151
           Q   E+
Sbjct: 144 QNAFES 149


>gi|309795048|ref|ZP_07689468.1| UvrD/REP helicase [Escherichia coli MS 145-7]
 gi|308121352|gb|EFO58614.1| UvrD/REP helicase [Escherichia coli MS 145-7]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|301643487|ref|ZP_07243534.1| UvrD/REP helicase [Escherichia coli MS 146-1]
 gi|301078126|gb|EFK92932.1| UvrD/REP helicase [Escherichia coli MS 146-1]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|300920996|ref|ZP_07137384.1| UvrD/REP helicase [Escherichia coli MS 115-1]
 gi|300412042|gb|EFJ95352.1| UvrD/REP helicase [Escherichia coli MS 115-1]
 gi|324019098|gb|EGB88317.1| UvrD/REP helicase [Escherichia coli MS 117-3]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|260771453|ref|ZP_05880378.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972]
 gi|260613579|gb|EEX38773.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972]
          Length = 1214

 Score = 38.5 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-----HPSTL-----LCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +      H S L     L +T T+AA AE+  R+   
Sbjct: 25  IEASAGTGKTFTIAGLYLRLLLGHGSEHTRHASALTVDQILVVTFTEAATAELRDRIRAR 84

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I   + L+     ++   IQ       D   A  LL+          V TIH FC+ ++ 
Sbjct: 85  IHD-ARLAFSRGKSDDPVIQPLLAEFVDHPLATRLLLNAERQMDEAAVYTIHGFCQRMLT 143

Query: 146 QFPLEA 151
           Q   E+
Sbjct: 144 QNAFES 149


>gi|218688798|ref|YP_002397010.1| DNA helicase IV [Escherichia coli ED1a]
 gi|218426362|emb|CAR07187.1| DNA helicase IV [Escherichia coli ED1a]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|30062501|ref|NP_836672.1| DNA helicase IV [Shigella flexneri 2a str. 2457T]
 gi|56479783|ref|NP_706885.2| DNA helicase IV [Shigella flexneri 2a str. 301]
 gi|30040747|gb|AAP16478.1| DNA helicase IV [Shigella flexneri 2a str. 2457T]
 gi|56383334|gb|AAN42592.2| DNA helicase IV [Shigella flexneri 2a str. 301]
 gi|313650788|gb|EFS15189.1| helicase IV [Shigella flexneri 2a str. 2457T]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|331676752|ref|ZP_08377448.1| helicase IV (75 kDa helicase) [Escherichia coli H591]
 gi|331075441|gb|EGI46739.1| helicase IV (75 kDa helicase) [Escherichia coli H591]
 gi|332102207|gb|EGJ05553.1| DNA helicase IV [Shigella sp. D9]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|322378358|ref|ZP_08052814.1| DNA helicase II [Helicobacter suis HS1]
 gi|322380928|ref|ZP_08054999.1| DNA helicase II [Helicobacter suis HS5]
 gi|321146651|gb|EFX41480.1| DNA helicase II [Helicobacter suis HS5]
 gi|321149215|gb|EFX43659.1| DNA helicase II [Helicobacter suis HS1]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          V A AGSGKT  L  R+  L+      P   L LT T  AA+EM  R +++I   ++
Sbjct: 28 VLAGAGSGKTKTLTTRLAYLIGYVGIPPENTLTLTFTNKAASEMHQRAMKLIGRRTY 84


>gi|304405679|ref|ZP_07387338.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9]
 gi|304345718|gb|EFM11553.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9]
          Length = 801

 Score = 38.5 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 47/156 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+      P ++L +T T  AA EM  RV +++        
Sbjct: 32  IMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREMQDRVAKLV-------- 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P+ SD                 + V T H+ C  I+++       T
Sbjct: 84  -------------GPSGSD-----------------IWVSTFHSMCVRILRKDISRIGFT 113

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           S F+I D           + S + +IM + N + KK
Sbjct: 114 SSFSILDSGD--------QLSVIRTIMKEQNIDTKK 141


>gi|300902873|ref|ZP_07120819.1| UvrD/REP helicase [Escherichia coli MS 84-1]
 gi|301302421|ref|ZP_07208552.1| UvrD/REP helicase [Escherichia coli MS 124-1]
 gi|300405086|gb|EFJ88624.1| UvrD/REP helicase [Escherichia coli MS 84-1]
 gi|300842260|gb|EFK70020.1| UvrD/REP helicase [Escherichia coli MS 124-1]
 gi|315258011|gb|EFU37979.1| UvrD/REP helicase [Escherichia coli MS 85-1]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|291542836|emb|CBL15946.1| ATP-dependent DNA helicase PcrA [Ruminococcus bromii L2-63]
          Length = 749

 Score = 38.5 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +LV R+  +L      P  +L +T T  AA E+  R+   +        
Sbjct: 30  ILAGAGSGKTTVLVNRIAYILQCELCKPWQILAITFTNKAAGELKERICAAVP------- 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E    +   T H+ C  I++++      T
Sbjct: 83  -------------------------------EGGADIWAATFHSTCARILRRYGDRIGYT 111

Query: 155 SHFAIADEEQSKKLIEEAKK 174
           SHF +   +  KKL+++  K
Sbjct: 112 SHFTVYGTDDQKKLVKDILK 131


>gi|229003295|ref|ZP_04161125.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4]
 gi|228757913|gb|EEM07128.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4]
          Length = 747

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+ +++
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 83


>gi|331646223|ref|ZP_08347326.1| helicase IV (75 kDa helicase) [Escherichia coli M605]
 gi|331044975|gb|EGI17102.1| helicase IV (75 kDa helicase) [Escherichia coli M605]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|297184355|gb|ADI20471.1| superfamily I DNA and RNA helicases [uncultured alpha
          proteobacterium EB080_L58F04]
          Length = 781

 Score = 38.5 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AG+GKT  L  R+  LL    A P  +L +T T  AA EM  RV E++
Sbjct: 50 AGAGTGKTKALTCRIAHLLTTGRARPHEILSVTFTNKAAREMKSRVAELL 99


>gi|260430925|ref|ZP_05784896.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis
          ITI-1157]
 gi|260414753|gb|EEX08012.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis
          ITI-1157]
          Length = 800

 Score = 38.5 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R+  LL    A P+ +L +T T  AA EM  RV
Sbjct: 52 AGAGTGKTKALTTRIAHLLNTGRARPNEILAVTFTNKAAREMKERV 97


>gi|228989471|ref|ZP_04149456.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM
          12442]
 gi|228770196|gb|EEM18775.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM
          12442]
          Length = 747

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+ +++
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 83


>gi|228995666|ref|ZP_04155329.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17]
 gi|228764043|gb|EEM12927.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17]
          Length = 747

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+ +++
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 83


>gi|194432359|ref|ZP_03064646.1| helicase IV [Shigella dysenteriae 1012]
 gi|194419246|gb|EDX35328.1| helicase IV [Shigella dysenteriae 1012]
 gi|332095922|gb|EGJ00929.1| helicase IV [Shigella dysenteriae 155-74]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|329123403|ref|ZP_08251967.1| exodeoxyribonuclease V beta subunit [Haemophilus aegyptius ATCC
           11116]
 gi|327470985|gb|EGF16440.1| exodeoxyribonuclease V beta subunit [Haemophilus aegyptius ATCC
           11116]
          Length = 1211

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 26/143 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEILSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQTI 136
                + + L+A   K Q K   K+           D+ +A H L    +      + TI
Sbjct: 80  D----AIDKLTA-FAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTI 134

Query: 137 HAFCEAIMQQFPLEANITSHFAI 159
           H FC  ++ Q+   + I  HF +
Sbjct: 135 HGFCRRMLMQYAFHSGI--HFNL 155


>gi|323976658|gb|EGB71746.1| UvrD/REP helicase [Escherichia coli TW10509]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|332162162|ref|YP_004298739.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318606214|emb|CBY27712.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666392|gb|ADZ43036.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 4   HNSFQEHS---ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           H   +EH    ++++     +S+     +   S  V A AGSGKT +LV R   LL  N 
Sbjct: 179 HRMLEEHQDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNE 238

Query: 60  AHPSTLLCLTHTKAAAAEMSHRV 82
           A P  +L L   + AA EM+ R+
Sbjct: 239 ALPEQILLLAFGRQAADEMNSRI 261


>gi|331682467|ref|ZP_08383086.1| helicase IV (75 kDa helicase) [Escherichia coli H299]
 gi|331080098|gb|EGI51277.1| helicase IV (75 kDa helicase) [Escherichia coli H299]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|300929663|ref|ZP_07145123.1| UvrD/REP helicase [Escherichia coli MS 187-1]
 gi|300949666|ref|ZP_07163649.1| UvrD/REP helicase [Escherichia coli MS 116-1]
 gi|300955382|ref|ZP_07167759.1| UvrD/REP helicase [Escherichia coli MS 175-1]
 gi|331641491|ref|ZP_08342626.1| helicase IV (75 kDa helicase) [Escherichia coli H736]
 gi|300317717|gb|EFJ67501.1| UvrD/REP helicase [Escherichia coli MS 175-1]
 gi|300450935|gb|EFK14555.1| UvrD/REP helicase [Escherichia coli MS 116-1]
 gi|300462401|gb|EFK25894.1| UvrD/REP helicase [Escherichia coli MS 187-1]
 gi|331038289|gb|EGI10509.1| helicase IV (75 kDa helicase) [Escherichia coli H736]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|297620279|ref|YP_003708416.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU
           86-1044]
 gi|297375580|gb|ADI37410.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU
           86-1044]
          Length = 1120

 Score = 38.5 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 9/122 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + A+AG+GKT  +   V+RLLL   HP     +L +T TK A +++  RV + I    ++
Sbjct: 40  LEASAGTGKTFSIENLVVRLLLEGEHPLRIDEILIVTFTKMATSDLRVRVRDTI---ENV 96

Query: 93  SDEILSAEITKIQGKKPNKSDMSKAR---HLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
            + +    + +    +P   D  K R    LL   L      ++ TIH FC  ++ +  +
Sbjct: 97  VNALEKGVLGRFDYLEPIDRDERKKRPAIRLLERALIGFDEAQIFTIHGFCYRMLAEHGM 156

Query: 150 EA 151
           + 
Sbjct: 157 DG 158


>gi|145635681|ref|ZP_01791377.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA]
 gi|145267076|gb|EDK07084.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA]
          Length = 671

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T S  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|126461535|ref|YP_001042649.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103199|gb|ABN75877.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 786

 Score = 38.5 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM  RV  ++
Sbjct: 54  AGAGTGKTKALTARIVHLLDSGKARPNEILAVTFTNKAAREMKDRVARLL 103


>gi|254821918|ref|ZP_05226919.1| hypothetical protein MintA_18442 [Mycobacterium intracellulare ATCC
           13950]
          Length = 400

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHT 71
           + L   T+ +  + + P     V A AG+GKT  +  RV+  L+AN +  P+ +L LT T
Sbjct: 33  LGLFPPTEEQSAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANGYAEPAQVLGLTFT 91

Query: 72  KAAAAEMSHRV 82
           + AA ++  RV
Sbjct: 92  RKAAGQLLRRV 102


>gi|227884078|ref|ZP_04001883.1| helicase IV [Escherichia coli 83972]
 gi|300978349|ref|ZP_07174222.1| UvrD/REP helicase [Escherichia coli MS 45-1]
 gi|301047779|ref|ZP_07194833.1| UvrD/REP helicase [Escherichia coli MS 185-1]
 gi|26107384|gb|AAN79567.1|AE016758_171 Helicase IV [Escherichia coli CFT073]
 gi|227838830|gb|EEJ49296.1| helicase IV [Escherichia coli 83972]
 gi|300300342|gb|EFJ56727.1| UvrD/REP helicase [Escherichia coli MS 185-1]
 gi|300409694|gb|EFJ93232.1| UvrD/REP helicase [Escherichia coli MS 45-1]
 gi|307552794|gb|ADN45569.1| DNA helicase IV [Escherichia coli ABU 83972]
 gi|315291182|gb|EFU50542.1| UvrD/REP helicase [Escherichia coli MS 153-1]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|15834632|ref|NP_296391.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
           Nigg]
          Length = 1026

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 28/137 (20%)

Query: 30  PTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVL 83
           PT S     ++ A+AG+GKT  + Q +LR LL      T  +L +T T AA  E+  R+ 
Sbjct: 9   PTTSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQ 68

Query: 84  EII--------TAWSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           E +         A SH    +   +S++ TK+      K    K R+ L T+ E    + 
Sbjct: 69  ESLKQALTLFSQALSHPETPLPPYVSSQETKV------KQLYXKXRNSLATLDE----MN 118

Query: 133 VQTIHAFCEAIMQQ-FP 148
           + TIH  C   ++Q FP
Sbjct: 119 IFTIHGXCRFTLEQHFP 135


>gi|89094047|ref|ZP_01166991.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92]
 gi|89081721|gb|EAR60949.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92]
          Length = 1179

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-------PSTLLCLTHTKAAAAEMSHRVLE-IIT 87
           + A+AG+GKT+ +    LRLLL           P  +L +T T+AA  E+  R+ + I+ 
Sbjct: 20  IEASAGTGKTYTITALYLRLLLGLGQVGDKPLGPDQILVVTFTEAATEELRDRIRQRIVD 79

Query: 88  AW-SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           A  S L+D++    +  +   K   +D+++A  LL   +       + TIH FC+ ++++
Sbjct: 80  ARNSFLTDQVSDPFLAAL---KAQVNDIAQAVKLLDQAIRQMDEAAIFTIHGFCQRMLKR 136

Query: 147 FPLEANITSHFAIADEEQS 165
              E+       +  ++QS
Sbjct: 137 HAFESGSLFDTELTQDDQS 155


>gi|294788471|ref|ZP_06753714.1| exodeoxyribonuclease V, beta subunit [Simonsiella muelleri ATCC
           29453]
 gi|294483902|gb|EFG31586.1| exodeoxyribonuclease V, beta subunit [Simonsiella muelleri ATCC
           29453]
          Length = 1206

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 24/151 (15%)

Query: 36  VSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRV------------ 82
           + A+AG+GKT  +     RL LL +   +T+L +T TKAA AE+  R+            
Sbjct: 18  IEASAGTGKTWNIAALFTRLILLEHYRINTILVVTFTKAATAELKTRLRIRLDETLSILN 77

Query: 83  --------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
                    +++    H + ++    +  IQ +   K D ++ +  L   +       + 
Sbjct: 78  RTPDAANNFDLLKQNCHSNGKLDEFLLNLIQ-QALQKEDQARLQLRLKAAISEFDNAAIY 136

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
           TIH FC+ ++Q F     +   F I  +EQS
Sbjct: 137 TIHGFCQRVLQDFAFLCQVP--FDIQLDEQS 165


>gi|284920807|emb|CBG33870.1| helicase IV [Escherichia coli 042]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|302874255|ref|YP_003842888.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307689481|ref|ZP_07631927.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302577112|gb|ADL51124.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 753

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  ++     + S +L +T T  AA EM  R+  I+
Sbjct: 26 AGAGSGKTRVLTYRIAHMIKELGIYSSQILAITFTNKAAQEMRERIRGIV 75


>gi|161486258|ref|NP_753024.2| DNA helicase IV [Escherichia coli CFT073]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|148378683|ref|YP_001253224.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|148288167|emb|CAL82235.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
          Length = 884

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 41/152 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D+IS     Q  A   T     V A AGSGKT  L  R + L+       + +LC T T
Sbjct: 3   LDVISGLNDAQREAVTTTEGYIRVIAGAGSGKTKALTSRYIYLVHELGISTANILCATFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +I                                       +   GL
Sbjct: 63  NKAAREMKKRIRTMIG--------------------------------------DNDTGL 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
            + T H FC  ++++     N   +F + D E
Sbjct: 85  -IGTFHGFCRRLLKEDIYTINYPDNFIVMDNE 115


>gi|116071601|ref|ZP_01468869.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107]
 gi|116065224|gb|EAU70982.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107]
          Length = 798

 Score = 38.5 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  + A P  +L +T T  AA EM  R LE+         
Sbjct: 24  VVAGAGSGKTRALTHRIAHLIGEHGADPGQILAVTFTNKAAREMKER-LEL--------- 73

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA- 151
            +L+  + + Q  +P +     + R L   I  E    L + T HA   A M +F ++  
Sbjct: 74  -LLAQRLAQSQFGQPWSTLPPVEQRQLRSRIYREITKELWIGTFHALF-ARMLRFDIDKF 131

Query: 152 ------NITSHFAIADEEQSKKLIEE 171
                   T  F+I DE  ++ L++E
Sbjct: 132 RDPDGLTWTKQFSIYDEADAQSLVKE 157


>gi|325474933|gb|EGC78119.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola
          F0402]
          Length = 745

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
          A AGSGKT ++  ++  L+   N  P  +L +T T  AA EMS R
Sbjct: 29 AGAGSGKTRVITTKIAYLIAEHNIEPERILAVTFTNKAAKEMSER 73


>gi|323947248|gb|EGB43256.1| UvrD/REP helicase [Escherichia coli H120]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|331662375|ref|ZP_08363298.1| helicase IV (75 kDa helicase) [Escherichia coli TA143]
 gi|331060797|gb|EGI32761.1| helicase IV (75 kDa helicase) [Escherichia coli TA143]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|296121490|ref|YP_003629268.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296013830|gb|ADG67069.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 680

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A AG+GKT ++  R+  L+ A   P  +L +T T  AA EM  R
Sbjct: 24 VLAGAGTGKTRVITYRMADLIAAGVDPERILSVTFTNKAAREMLDR 69


>gi|237737235|ref|ZP_04567716.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229421097|gb|EEO36144.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 518

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  S    EQ  A   T   + V A AGSGKT  +V R   L+        +L +T T+
Sbjct: 61  IDYSSLLNEEQKKALLSTEGQYLVIAGAGSGKTRTIVYRTAWLIENGVSEEKILMVTFTR 120

Query: 73  AAAAEMSHRVLEIITA 88
            A+ EM  R+  I+  
Sbjct: 121 KASEEMKERLKNILNV 136


>gi|237753157|ref|ZP_04583637.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC
          BAA-430]
 gi|229375424|gb|EEO25515.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC
          BAA-430]
          Length = 697

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  +  R+  L+ +    P   L LT T  AA EM  R L +I
Sbjct: 27 AGAGSGKTKTITARLAYLIDVVGIPPGNTLTLTFTNKAAGEMQKRALNMI 76


>gi|300937687|ref|ZP_07152490.1| UvrD/REP helicase [Escherichia coli MS 21-1]
 gi|300457288|gb|EFK20781.1| UvrD/REP helicase [Escherichia coli MS 21-1]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEAFPEQILLLAFGRKAAEEMDERIRE 294


>gi|258542141|ref|YP_003187574.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256633219|dbj|BAH99194.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256636278|dbj|BAI02247.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03]
 gi|256639331|dbj|BAI05293.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07]
 gi|256642387|dbj|BAI08342.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22]
 gi|256645442|dbj|BAI11390.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26]
 gi|256648495|dbj|BAI14436.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32]
 gi|256651548|dbj|BAI17482.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654539|dbj|BAI20466.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12]
          Length = 743

 Score = 38.5 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 41/138 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT +L  R   +LL   A P  +L +T T  AA EM  R+            
Sbjct: 44  VLAGAGTGKTRVLTTRFAHILLTGRAKPWQILTVTFTNKAAREMRERIG----------- 92

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                                        +L +P  GL + T HA C  ++++      +
Sbjct: 93  ----------------------------LLLGSPAEGLWLGTFHALCARMLRRHAEYVGL 124

Query: 154 TSHFAIADEEQSKKLIEE 171
           T  F I D +   +L+++
Sbjct: 125 TQSFTILDTDDQLRLLKQ 142


>gi|261378815|ref|ZP_05983388.1| exodeoxyribonuclease V, beta subunit [Neisseria cinerea ATCC 14685]
 gi|269144795|gb|EEZ71213.1| exodeoxyribonuclease V, beta subunit [Neisseria cinerea ATCC 14685]
          Length = 1204

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             ++R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|224369743|ref|YP_002603907.1| RecB [Desulfobacterium autotrophicum HRM2]
 gi|223692460|gb|ACN15743.1| RecB [Desulfobacterium autotrophicum HRM2]
          Length = 1242

 Score = 38.5 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 26/154 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEII 86
           + A+AG+GKT+ +    +RL+L +           P  +L +T T AA  E+  R+   +
Sbjct: 18  IEASAGTGKTYTIAALYIRLVLGHGKENGFSRPLVPPEILVVTFTNAATQELRERIRARL 77

Query: 87  TAWSHL------SDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHA 138
           T            D  L       QG K + S  D+    +LL           + TIHA
Sbjct: 78  TEACAFFRGRGGGDPFL-------QGLKDDYSPGDLPAMANLLERAALWMDESAIHTIHA 130

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           +C+ ++ Q   ++   S F +  E     L+EEA
Sbjct: 131 WCQRMLFQHAFDS--LSLFDLTLEPGDDDLLEEA 162


>gi|331672492|ref|ZP_08373282.1| helicase IV (75 kDa helicase) [Escherichia coli TA280]
 gi|331070398|gb|EGI41763.1| helicase IV (75 kDa helicase) [Escherichia coli TA280]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|319776263|ref|YP_004138751.1| Exodeoxyribonuclease V subunit beta [Haemophilus influenzae F3047]
 gi|317450854|emb|CBY87078.1| Exodeoxyribonuclease V beta chain [Haemophilus influenzae F3047]
          Length = 1211

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134
                 D I  L+A   K Q K   K+           D+ +A H L    +      + 
Sbjct: 80  ------DAIDKLTA-FAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIY 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159
           TIH FC  ++ Q+   + I  HF +
Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|291459846|ref|ZP_06599236.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417636|gb|EFE91355.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 834

 Score = 38.5 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           DL      EQL A   T     V A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 53  DLEKILNKEQLSAVKQTEGPLLVLAGAGSGKTRVLTYRIAYLIENCGVAPWHILAITFTN 112

Query: 73  AAAAEMSHRVLEIITA 88
            AA EM  RV E++ A
Sbjct: 113 KAAEEMRKRVDELLCA 128


>gi|218704386|ref|YP_002411905.1| DNA helicase IV [Escherichia coli UMN026]
 gi|293404262|ref|ZP_06648256.1| helicase IV [Escherichia coli FVEC1412]
 gi|298380046|ref|ZP_06989651.1| helicase IV [Escherichia coli FVEC1302]
 gi|218431483|emb|CAR12361.1| DNA helicase IV [Escherichia coli UMN026]
 gi|291428848|gb|EFF01873.1| helicase IV [Escherichia coli FVEC1412]
 gi|298279744|gb|EFI21252.1| helicase IV [Escherichia coli FVEC1302]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|167627248|ref|YP_001677748.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597249|gb|ABZ87247.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 742

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 39/145 (26%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           R++ + A AGSGKT +L  R+  L          +L +T T  AA E+ HRV +++   +
Sbjct: 23  RNSLILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAAKEIQHRVEKMLGIST 82

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                  G+ + T H     ++++   E
Sbjct: 83  F--------------------------------------GMWIGTFHGIAHRLLRKHAHE 104

Query: 151 ANITSHFAIADEEQSKKLIEEAKKS 175
             +  +F I D+++  +LI++  KS
Sbjct: 105 LGLDKNFRILDQDEQAQLIKKVIKS 129


>gi|145630792|ref|ZP_01786570.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
 gi|144983674|gb|EDJ91134.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
          Length = 1211

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 26/143 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEILSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQTI 136
                + + L+A   K Q K   K+           D+ +A H L    +      + TI
Sbjct: 80  D----AIDKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTI 134

Query: 137 HAFCEAIMQQFPLEANITSHFAI 159
           H FC  ++ Q+   + I  HF +
Sbjct: 135 HGFCRRMLMQYAFHSGI--HFNL 155


>gi|329113313|ref|ZP_08242094.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001]
 gi|326697138|gb|EGE48798.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001]
          Length = 783

 Score = 38.5 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 41/138 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT +L  R   +LL   A P  +L +T T  AA EM  R+            
Sbjct: 84  VLAGAGTGKTRVLTTRFAHILLTGRAKPWQILTVTFTNKAAREMHERIG----------- 132

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153
                                        +L +P  GL + T HA C  ++++      +
Sbjct: 133 ----------------------------LLLGSPAEGLWLGTFHALCARMLRRHAEYVGL 164

Query: 154 TSHFAIADEEQSKKLIEE 171
           T  F I D +   +L+++
Sbjct: 165 TQSFTILDTDDQLRLLKQ 182


>gi|319775408|ref|YP_004137896.1| DNA helicase and single-stranded DNA-dependent ATPase
          [Haemophilus influenzae F3047]
 gi|317449999|emb|CBY86212.1| DNA helicase and single-stranded DNA-dependent ATPase
          [Haemophilus influenzae F3047]
          Length = 670

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T S  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
          Length = 861

 Score = 38.5 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 44/190 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
           +Q +  +  R+  + A+AG+GKT+ L  RV  ++ +       +LC+T T  AA EM  R
Sbjct: 7   QQRVIDELDRNILLLASAGTGKTNTLAYRVAHIIESGRCEAHQILCMTFTNKAAQEMKSR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +            E L  +  K                           +++ T H+FC 
Sbjct: 67  I------------EFLVGQPAK--------------------------AVEISTFHSFCF 88

Query: 142 AIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            ++QQ    + ++ +   I DEE  K+L    K   +  +   +   + K +  + E  +
Sbjct: 89  YVLQQEGKRDESLYTDVTIFDEEDCKELYLPYKPRNMRDMNFASLISMVKEYRSVYEFYS 148

Query: 201 DEDIETLISD 210
               E+LI D
Sbjct: 149 ----ESLIDD 154


>gi|261251138|ref|ZP_05943712.1| DNA helicase IV [Vibrio orientalis CIP 102891]
 gi|260938011|gb|EEX93999.1| DNA helicase IV [Vibrio orientalis CIP 102891]
          Length = 688

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           A AGSGKT +L  RV  LL ++ A  S +L L   + AA+EMS R+ + I +
Sbjct: 219 AGAGSGKTSVLTARVAYLLQSHLAQASDILMLAFGRDAASEMSQRLNDKIGS 270


>gi|218700518|ref|YP_002408147.1| DNA helicase IV [Escherichia coli IAI39]
 gi|218370504|emb|CAR18311.1| DNA helicase IV [Escherichia coli IAI39]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|189501505|ref|YP_001957222.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189496946|gb|ACE05493.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2]
          Length = 757

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AG+GKT +L  R+  L+      P  +L LT T  AA EM  R+ ++I
Sbjct: 27 AGAGAGKTKVLTTRIAYLIQEKKVDPFKILALTFTNKAANEMKKRIEQVI 76


>gi|145634939|ref|ZP_01790646.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittAA]
 gi|145267805|gb|EDK07802.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittAA]
          Length = 1202

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134
                 D I  L+A   K Q K   K+           D+ +A H L    +      + 
Sbjct: 80  ------DAINKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIY 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159
           TIH FC  ++ Q+   + I  HF +
Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|145637780|ref|ZP_01793430.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH]
 gi|145269025|gb|EDK08978.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH]
          Length = 671

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T S  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|145633194|ref|ZP_01788925.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655]
 gi|144986040|gb|EDJ92630.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655]
          Length = 850

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134
                 D I  L+A   K Q K   K+           D+ +A H L    +      + 
Sbjct: 80  ------DAINKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIY 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159
           TIH FC  ++ Q+   + I  HF +
Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|221638499|ref|YP_002524761.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           KD131]
 gi|221159280|gb|ACM00260.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           KD131]
          Length = 786

 Score = 38.5 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM  RV  ++
Sbjct: 54  AGAGTGKTKALTARIVHLLDSGKARPNEILAVTFTNKAAREMKDRVARLL 103


>gi|78211730|ref|YP_380509.1| ATP-dependent DNA helicase Rep [Synechococcus sp. CC9605]
 gi|78196189|gb|ABB33954.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9605]
          Length = 796

 Score = 38.5 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+  + A P+ +L +T T  AA EM  R LE++ A
Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEVLLA 76


>gi|319897107|ref|YP_004135302.1| exodeoxyribonuclease v beta chain [Haemophilus influenzae F3031]
 gi|317432611|emb|CBY80972.1| Exodeoxyribonuclease V beta chain [Haemophilus influenzae F3031]
          Length = 1201

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134
                 D I  L+A   K Q K   K+           D+ +A H L    +      + 
Sbjct: 80  ------DAINKLTA-FAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIY 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159
           TIH FC  ++ Q+   + I  HF +
Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|225573671|ref|ZP_03782426.1| hypothetical protein RUMHYD_01867 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038964|gb|EEG49210.1| hypothetical protein RUMHYD_01867 [Blautia hydrogenotrophica DSM
          10507]
          Length = 608

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEI 85
          V A  GSGKT ++V+R   ++  +  P T +L +T +KAAA EM  R L +
Sbjct: 20 VLAGPGSGKTSVIVERTSYMIHHHQVPETGILVVTFSKAAAREMKERFLRL 70


>gi|210608461|ref|ZP_03287837.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787]
 gi|210153037|gb|EEA84043.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787]
          Length = 741

 Score = 38.5 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV +I+
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIDEKGVNPWNILAITFTNKAAGEMRERVDQIV 75


>gi|167631048|ref|YP_001681547.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum
          Ice1]
 gi|167593788|gb|ABZ85536.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum
          Ice1]
          Length = 731

 Score = 38.5 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          A AGSGKT +L  R+  L+      P  +L +T T  AAAEM  R+  +I   +H
Sbjct: 28 AGAGSGKTRVLTHRIGHLIEQCRVSPFHILAITFTNKAAAEMRERLGRLIGPRAH 82


>gi|83282597|ref|XP_729839.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488804|gb|EAA21404.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL-- 92
            + A  GSGKT  L  R+++ ++      +++C+T T  +A ++  ++++ I     L  
Sbjct: 54  CIIACPGSGKTSTLTARIIKSIIE--RKKSIVCITFTNYSAKDLKEKIIKKINCLIDLCT 111

Query: 93  SDEILSAEITK---IQGKK--PNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ 146
             EI +    +   I G K    K D++K  +     +L+T   + + TIH+FC  I+ +
Sbjct: 112 GKEIQNKLFNRNKNIGGNKIRNKKYDINKTMYKNKFKVLDTT--IFIGTIHSFCRYILLK 169

Query: 147 FPLEANI 153
           +  E  I
Sbjct: 170 YKGEFKI 176


>gi|323190776|gb|EFZ76045.1| helicase IV [Escherichia coli RN587/1]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|301023091|ref|ZP_07186898.1| UvrD/REP helicase [Escherichia coli MS 69-1]
 gi|300397212|gb|EFJ80750.1| UvrD/REP helicase [Escherichia coli MS 69-1]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|300896343|ref|ZP_07114885.1| UvrD/REP helicase [Escherichia coli MS 198-1]
 gi|300359754|gb|EFJ75624.1| UvrD/REP helicase [Escherichia coli MS 198-1]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep [Herbaspirillum seropedicae SmR1]
 gi|300076390|gb|ADJ65789.1| ATP-dependent DNA helicase rep protein [Herbaspirillum seropedicae
           SmR1]
          Length = 690

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 37/147 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  L+    + S  +  LT T  AA EM  R+ +++        
Sbjct: 25  VLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALEMQERIAKLL-------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                             D  +A+HL ++           T H+    I++Q      + 
Sbjct: 77  -----------------KDPKQAKHLTVS-----------TFHSLGVKILRQESQHLGLK 108

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIM 181
             F+I D +    L++E   +T  +I+
Sbjct: 109 DRFSIMDSDDCFSLVQELAVTTDKAII 135


>gi|293409341|ref|ZP_06652917.1| helD [Escherichia coli B354]
 gi|291469809|gb|EFF12293.1| helD [Escherichia coli B354]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|42527836|ref|NP_972934.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405]
 gi|41818664|gb|AAS12853.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola
          ATCC 35405]
          Length = 745

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
          A AGSGKT ++  ++  L+   N  P  +L +T T  AA EMS R
Sbjct: 29 AGAGSGKTRVITTKIAYLIAEHNIEPERILAVTFTNKAAKEMSER 73


>gi|326334227|ref|ZP_08200450.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1]
 gi|325948018|gb|EGD40135.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1]
          Length = 1074

 Score = 38.5 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
          EQ  A + P   A V A AGSGKT ++  RV+ L+      P  +L LT T  A AE++ 
Sbjct: 25 EQFRAITAPLEPAVVIAGAGSGKTAVMAARVVWLVATGRVLPGEVLGLTFTTKATAELAT 84

Query: 81 RVLE 84
          R+ E
Sbjct: 85 RIRE 88


>gi|270292732|ref|ZP_06198943.1| exonuclease RexA [Streptococcus sp. M143]
 gi|270278711|gb|EFA24557.1| exonuclease RexA [Streptococcus sp. M143]
          Length = 1217

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 20/134 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++ +R+L  L        L   T T  AA E+  R+ + I+        
Sbjct: 45  VSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELKERLEKKIS-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  +IQ      SD+   +HL   + + P    + T+ +F +  + +     +I  
Sbjct: 97  ------QQIQ----ESSDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLIDIAP 145

Query: 156 HFAIADEEQSKKLI 169
           +F I   E S++LI
Sbjct: 146 NFRILQNE-SEQLI 158


>gi|239929059|ref|ZP_04686012.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 374

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 35/154 (22%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV +    
Sbjct: 30  PPAPQVIVAGAGSGKTTVMAARVVWLVGTGRVAPEQVLGLTFTNKAAGELAERVRKA--- 86

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                  ++ A +T      P+                 PG   + T HAF   ++    
Sbjct: 87  -------LIKAGVTDPDVIDPDNP---------------PGEPVISTYHAFAGRLL---- 120

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                T H      E S +L+ +A +  LA+ +L
Sbjct: 121 -----TDHGLRIGLEPSSRLLADATRYQLAARVL 149


>gi|254788455|ref|YP_003075884.1| DNA-dependent helicase II [Teredinibacter turnerae T7901]
 gi|237683747|gb|ACR11011.1| DNA helicase II [Teredinibacter turnerae T7901]
          Length = 728

 Score = 38.5 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          P  +  V A AGSGKT +LV R+  L+   +  P  ++ +T T  AA EM  R+  +I
Sbjct: 21 PLGNQLVLAGAGSGKTRVLVHRIAWLMEQQSVSPHQVMAVTFTNKAAREMRERLTHLI 78


>gi|226330641|ref|ZP_03806159.1| hypothetical protein PROPEN_04561 [Proteus penneri ATCC 35198]
 gi|225201436|gb|EEG83790.1| hypothetical protein PROPEN_04561 [Proteus penneri ATCC 35198]
          Length = 333

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM+ R+
Sbjct: 120 VLAGAGSGKTSVLVARAGWLLRRQLAQPDQILLLAFGRKAAQEMNERL 167


>gi|186681485|ref|YP_001864681.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102]
 gi|186463937|gb|ACC79738.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102]
          Length = 773

 Score = 38.5 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
          + TID +S     Q  A +       V A AGSGKT  L  R+  L+L +   P  +L +
Sbjct: 2  TTTIDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVDPENILAV 61

Query: 69 THTKAAAAEMSHRV 82
          T T  AA EM  R+
Sbjct: 62 TFTNKAAREMKERI 75


>gi|170769313|ref|ZP_02903766.1| helicase IV [Escherichia albertii TW07627]
 gi|170121965|gb|EDS90896.1| helicase IV [Escherichia albertii TW07627]
          Length = 714

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 244 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDDRIRE 293


>gi|110641152|ref|YP_668882.1| DNA helicase IV [Escherichia coli 536]
 gi|300982944|ref|ZP_07176378.1| UvrD/REP helicase [Escherichia coli MS 200-1]
 gi|110342744|gb|ABG68981.1| helicase IV [Escherichia coli 536]
 gi|300307033|gb|EFJ61553.1| UvrD/REP helicase [Escherichia coli MS 200-1]
 gi|324012915|gb|EGB82134.1| UvrD/REP helicase [Escherichia coli MS 60-1]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294


>gi|120402221|ref|YP_952050.1| exodeoxyribonuclease V subunit beta [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955039|gb|ABM12044.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           vanbaalenii PYR-1]
          Length = 1097

 Score = 38.5 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV----LE 84
           P  +  + A+AG+GKT  L   V R +    A    +L +T  +AA+ E+  RV    L+
Sbjct: 13  PRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDQMLLITFGRAASQELRERVRAQILD 72

Query: 85  IITAW---SHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            + A+   SH +D EI++  +T   G      ++++ R  L   L       + T H FC
Sbjct: 73  ALRAFDDPSHAADNEIVAHLLTGSHG------ELTERRQRLRDALAGFDAATIATTHQFC 126

Query: 141 EAIMQQFPLEANITS 155
           + +++   +  +  S
Sbjct: 127 QLVLRSLGVAGDTDS 141


>gi|46578573|ref|YP_009381.1| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46447984|gb|AAS94640.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|311232497|gb|ADP85351.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 719

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT  +V R+  LL      S++L LT T+ AA EM  R   ++
Sbjct: 25 VIAGAGSGKTRTVVYRLANLLERGVPASSILLLTFTRKAANEMLQRASRLL 75


>gi|297157455|gb|ADI07167.1| ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 1221

 Score = 38.5 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E+S RV
Sbjct: 30 PPSPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELSERV 83


>gi|283850979|ref|ZP_06368264.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283573625|gb|EFC21600.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 1080

 Score = 38.5 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           R   V A  G+GKTH L+ ++  LL A      +L +T T+ AA E+  R+   I A
Sbjct: 487 RHLLVVAGPGTGKTHTLLAKIRSLLEAGVPADKILAVTFTRRAAGELRDRLARDIPA 543


>gi|163784551|ref|ZP_02179406.1| First subunit of major exonuclease [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880179|gb|EDP73828.1| First subunit of major exonuclease [Hydrogenivirga sp. 128-5-R1-1]
          Length = 423

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 32/172 (18%)

Query: 38  ANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AG+GKT+ LV +VL ++   +     +L LT T+ AAAE+  ++ E I          
Sbjct: 8   ASAGTGKTYSLVSQVLDKIRKEDVSLRQILILTFTEKAAAELKEKISERI---------- 57

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                 K   K PN S   K + L   +L    G  + T H+     ++++P  + I   
Sbjct: 58  ------KEALKDPNVSKKEKIK-LHRQLLFIDSGY-IGTFHSVFFRFLKKYPHVSGIDKS 109

Query: 157 FAIAD-----------EEQSKKLIEEAKKS--TLASIMLDNNEELKKAFYEI 195
           F++             E+  +K  EE  K    + +   DN ++LKK F ++
Sbjct: 110 FSVLSSQLDYILGLFFEKWIEKDFEENPKDWEKIITFFTDNEKKLKKIFLQL 161


>gi|77462643|ref|YP_352147.1| ATP-dependent DNA helicase Rep [Rhodobacter sphaeroides 2.4.1]
 gi|77387061|gb|ABA78246.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           2.4.1]
          Length = 783

 Score = 38.5 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM  RV  ++
Sbjct: 51  AGAGTGKTKALTARIVHLLDSGKARPNEILAVTFTNKAAREMKDRVARLL 100


>gi|284047984|ref|YP_003398323.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
          20731]
 gi|283952205|gb|ADB47008.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
          20731]
          Length = 750

 Score = 38.5 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT  L  ++  LL     P  +L +T T  AA EM  RV
Sbjct: 25 ILAGAGSGKTKALTTKIAYLLEKGVKPWNILAITFTNKAAKEMRQRV 71


>gi|254293049|ref|YP_003059072.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
 gi|254041580|gb|ACT58375.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
          Length = 1134

 Score = 38.5 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           + + AS    +  + A  G+GKT  LV RV  LL     P  +L LT +  AA EM+ R+
Sbjct: 201 QAVAASHRGNAYLLEAGPGTGKTQTLVARVDALLEEGVDPRRILLLTFSNKAAGEMADRI 260


>gi|167587569|ref|ZP_02379957.1| exodeoxyribonuclease V, beta subunit [Burkholderia ubonensis Bu]
          Length = 898

 Score = 38.5 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A +           D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFIARLVDTTLGDGGVLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|301170069|emb|CBW29673.1| exonuclease V (RecBCD complex), beta subunit [Haemophilus
           influenzae 10810]
          Length = 1211

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134
                 D I  L+A   K Q K   K+           D+ +A H L    +      + 
Sbjct: 80  ------DAINKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIY 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159
           TIH FC  ++ Q+   + I  HF +
Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|241667801|ref|ZP_04755379.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876345|ref|ZP_05249055.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842366|gb|EET20780.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 742

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 39/145 (26%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           R++ + A AGSGKT +L  R+  L          +L +T T  AA E+ HRV +++   +
Sbjct: 23  RNSLILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAAKEIQHRVEKMLGIST 82

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                  G+ + T H     ++++   E
Sbjct: 83  F--------------------------------------GMWIGTFHGIAHRLLRKHAHE 104

Query: 151 ANITSHFAIADEEQSKKLIEEAKKS 175
             +  +F I D+++  +LI++  KS
Sbjct: 105 LGLDKNFRILDQDEQAQLIKKVIKS 129


>gi|15673102|ref|NP_267276.1| ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis
          Il1403]
 gi|12724080|gb|AAK05218.1|AE006344_7 ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis
          Il1403]
 gi|326406669|gb|ADZ63740.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactococcus
          lactis subsp. lactis CV56]
          Length = 758

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSL 75


>gi|319649937|ref|ZP_08004087.1| YjcD protein [Bacillus sp. 2_A_57_CT2]
 gi|317398375|gb|EFV79063.1| YjcD protein [Bacillus sp. 2_A_57_CT2]
          Length = 772

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R   +L   +  P +++ +T T  AAAEM  R+ +     S    
Sbjct: 161 VLAGAGSGKTRVLTTRTAFMLREKDIDPKSIMLVTFTAKAAAEMKERLTQYPGMDSRKVR 220

Query: 95  EILSA 99
           +I+S 
Sbjct: 221 QIVSG 225


>gi|261880622|ref|ZP_06007049.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361]
 gi|270332663|gb|EFA43449.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361]
          Length = 847

 Score = 38.5 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 38/141 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT +L  ++  LL  +   P  +L LT T  AA EM  R+ +++        
Sbjct: 28  VIAGAGAGKTRVLTYKIAWLLEHHGMKPWNILALTFTNKAAKEMKQRIGQLV-------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                              M +AR+           L++ T H+    I++         
Sbjct: 80  ------------------GMERARY-----------LQMGTFHSVFAKILRMEARNVGYG 110

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S F I DE  S+ LI+   K+
Sbjct: 111 SDFTIYDEMDSRSLIKNIVKA 131


>gi|125624253|ref|YP_001032736.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|124493061|emb|CAL98025.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300071034|gb|ADJ60434.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
          NZ9000]
          Length = 758

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSL 75


>gi|299065225|emb|CBJ36391.1| ATP-dependent DNA helicase [Ralstonia solanacearum CMR15]
          Length = 680

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++  
Sbjct: 3  AGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 54


>gi|281491616|ref|YP_003353596.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis
          KF147]
 gi|281375334|gb|ADA64847.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis
          KF147]
          Length = 758

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSL 75


>gi|227874195|ref|ZP_03992397.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
 gi|227839950|gb|EEJ50378.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
          Length = 793

 Score = 38.5 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+L     P  +L +T T  AA EM  RV +++
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLILEKGISPYQILAITFTNKAAQEMRDRVNQLL 75


>gi|301060341|ref|ZP_07201204.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2]
 gi|300445537|gb|EFK09439.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2]
          Length = 1223

 Score = 38.1 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEII 86
           + A+AG+GKT+ +    LRL+L +           P  +L +T T AA  E+ HR+ + +
Sbjct: 18  IEASAGTGKTYTIGALYLRLVLGHGGKNGFHRALMPPEILVVTFTNAATEELRHRIRQKL 77

Query: 87  TAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
              +   +     +  +  + G  P  S   KAR L  + L       + TIH++   ++
Sbjct: 78  VEAAGYFNGTCKGDGFLEGLAGAFPKASWPEKARVLEQSSLWMDEA-AIHTIHSWSSRML 136

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEA 172
           +Q            +A ++++  L+EEA
Sbjct: 137 RQHAFLCGSLFDLELAPDDEN--LLEEA 162


>gi|282882802|ref|ZP_06291407.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B]
 gi|281297213|gb|EFA89704.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B]
          Length = 720

 Score = 38.1 bits (87), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
          ID ++  + E LL ++      + A AGSGKT ++  ++   L+ N  PS  +L +T T 
Sbjct: 3  IDSLNDKQKEALLYNEG--PLLILAGAGSGKTKVVTSKIA-YLIENEVPSWRILAITFTN 59

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  +I
Sbjct: 60 KAAREMRERVAMLI 73


>gi|238795895|ref|ZP_04639408.1| Helicase IV (75 kDa helicase) [Yersinia mollaretii ATCC 43969]
 gi|238720358|gb|EEQ12161.1| Helicase IV (75 kDa helicase) [Yersinia mollaretii ATCC 43969]
          Length = 684

 Score = 38.1 bits (87), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL  N A P  +L L   + AA EM+ R+
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261


>gi|118581858|ref|YP_903108.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
 gi|118504568|gb|ABL01051.1| ATP-dependent DNA helicase PcrA [Pelobacter propionicus DSM 2379]
          Length = 762

 Score = 38.1 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT ++  R+  L+  +   P  +L +T T  AA EMS RV  ++
Sbjct: 24 ILAGAGSGKTRVITHRIAHLIHNHGVRPWNILAVTFTNKAAREMSERVSRLL 75


>gi|307703404|ref|ZP_07640346.1| exonuclease RexA [Streptococcus oralis ATCC 35037]
 gi|307622811|gb|EFO01806.1| exonuclease RexA [Streptococcus oralis ATCC 35037]
          Length = 139

 Score = 38.1 bits (87), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91


>gi|302558544|ref|ZP_07310886.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000]
 gi|302476162|gb|EFL39255.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000]
          Length = 1072

 Score = 38.1 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 35/167 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 17  IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ RV +           ++ A +T      P+                 PG   + T
Sbjct: 77  GELAERVRK----------ALVRAGVTDPDAIDPDNP---------------PGEPVIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            HAF   ++    L   +         E + +L+ +A +  LA+ +L
Sbjct: 112 YHAFAGRLLTDHGLRVGL---------EPTSRLLADATRYQLAARVL 149


>gi|268323490|emb|CBH37078.1| putative ATP-dependent DNA helicase [uncultured archaeon]
 gi|268326506|emb|CBH40094.1| putative ATP-dependent DNA helicase [uncultured archaeon]
          Length = 615

 Score = 38.1 bits (87), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A+AGSGKT +L +RV R LL   +   +L LT T  A  E+  R+ +I
Sbjct: 24 VKASAGSGKTRVLTERV-RYLLGKTN-KKVLALTFTNKAGEEIKERLSDI 71


>gi|156036288|ref|XP_001586255.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980]
 gi|154698238|gb|EDN97976.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980
          UF-70]
          Length = 999

 Score = 38.1 bits (87), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 13 TID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          TID  LI    S++   S    +  + A  GSGKTH L  R   LL     P  ++  T 
Sbjct: 2  TIDNLLIGLNASQRAAVSSQADTLAILAGPGSGKTHTLTSRTAWLLHQGLQPWNIIVATF 61

Query: 71 TKAAAAEMSHRVLEII 86
          T  AA EM  R+ ++I
Sbjct: 62 TVKAAREMKERIGKLI 77


>gi|115351152|ref|YP_772991.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria AMMD]
 gi|115281140|gb|ABI86657.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria AMMD]
          Length = 1234

 Score = 38.1 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +     + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVERLLETTLGDAGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|68171270|ref|ZP_00544672.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657941|ref|YP_507655.1| UvrD/Rep family helicase [Ehrlichia chaffeensis str. Arkansas]
 gi|67999317|gb|EAM85964.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599398|gb|ABD44867.1| helicase, UvrD/Rep family [Ehrlichia chaffeensis str. Arkansas]
          Length = 639

 Score = 38.1 bits (87), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT  +  R+  ++  N A PS +L +T T  AA EM  R+ E+   ++
Sbjct: 27 AGAGTGKTRTITSRIAYIINNNFALPSQILAVTFTNKAANEMLSRISELTPVYN 80


>gi|157375075|ref|YP_001473675.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3]
 gi|157317449|gb|ABV36547.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3]
          Length = 1251

 Score = 38.1 bits (87), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 28/149 (18%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87
           S  + A+AG+GKT  +    +RLLL +     L C     +T T AA  E+  R+   I 
Sbjct: 42  SRLIEASAGTGKTFTIAGLYVRLLLGHEIEKPLSCEQILVVTFTNAATGELRDRIRRKIQ 101

Query: 88  -AWSHL----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK------VQTI 136
            A+       +D+ L   + ++  +          RHL +  L+    LK      + TI
Sbjct: 102 LAYRRFIGLETDDDLIESLYRLTPE--------SERHLALKRLDL--ALKSLDEASIFTI 151

Query: 137 HAFCEAIMQQFPLEANI--TSHFAIADEE 163
           H FC+ I+     E+++   S F + D E
Sbjct: 152 HGFCQRILADMAFESSLLFESEFTLDDSE 180


>gi|328462071|gb|EGF34244.1| ATP-dependent helicase [Lactobacillus helveticus MTCC 5463]
          Length = 745

 Score = 38.1 bits (87), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMRER 73


>gi|317488584|ref|ZP_07947129.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA]
 gi|325832008|ref|ZP_08165105.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1]
 gi|316912326|gb|EFV33890.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA]
 gi|325486329|gb|EGC88781.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1]
          Length = 813

 Score = 38.1 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+   +  P  +L +T T  AAAEM  R+  ++        
Sbjct: 25  VLAGAGSGKTRVLTYRIANLIENHDVAPWEILAITFTNKAAAEMRERLNGLVG------- 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                + R           G+ V T H+ C  +++    +   T
Sbjct: 78  --------------------PRCR-----------GMWVSTFHSMCVRMLRSDAEKLGFT 106

Query: 155 SHFAIADEEQSKKLIEE 171
            +F I D +  K+L +E
Sbjct: 107 RNFTIYDTDDQKRLYKE 123


>gi|260102795|ref|ZP_05753032.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM
          20075]
 gi|260083399|gb|EEW67519.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM
          20075]
          Length = 748

 Score = 38.1 bits (87), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMRER 73


>gi|229847480|ref|ZP_04467577.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 7P49H1]
 gi|229809621|gb|EEP45348.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 7P49H1]
          Length = 1211

 Score = 38.1 bits (87), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 32/146 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  -------AWSHL-------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
                  A++         +DE L+A    +        D+ +A H L    +      +
Sbjct: 80  DAIDKLIAFAETQDKSAFKNDEFLTALCDNL--------DIFEAIHRLKLAEQNMDLAAI 131

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAI 159
            TIH FC  ++ Q+   + I  HF +
Sbjct: 132 YTIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|227501454|ref|ZP_03931503.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227077479|gb|EEI15442.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 795

 Score = 38.1 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 23 EQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80
          +QL A   T R   + A AGSGKT +L +R+  L+     +P   L +T T  AAAEM  
Sbjct: 4  QQLEAVTHTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWESLAITFTNKAAAEMKE 63

Query: 81 RVLEII 86
          RV  ++
Sbjct: 64 RVGSLV 69


>gi|76802567|ref|YP_327575.1| helicase [Natronomonas pharaonis DSM 2160]
 gi|76558432|emb|CAI50023.1| probable helicase [Natronomonas pharaonis DSM 2160]
          Length = 1028

 Score = 38.1 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           Y + F +  E  + +++ + E ++ +D  R+  V+A AG+GKT  L  RV  L+     P
Sbjct: 242 YDDLFSDIDEEGNDLNRAQREAVVTND-LRNLVVAA-AGTGKTLALTYRVAYLVAEGVDP 299

Query: 63  STLLCLTHTKAAAAEMSHRVLE 84
           + +  LT+T+ AA EM  R+ E
Sbjct: 300 ARIAALTYTRQAAREMELRLEE 321


>gi|58616965|ref|YP_196164.1| DNA helicase II [Ehrlichia ruminantium str. Gardel]
 gi|58416577|emb|CAI27690.1| DNA helicase II [Ehrlichia ruminantium str. Gardel]
          Length = 639

 Score = 38.1 bits (87), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AG+GKT  +  R+  +L  N A P+ +L +T T  AA EM  R+ E+  A
Sbjct: 27 AGAGTGKTRTITSRIAYILNNNFALPNQILAVTFTNKAANEMLSRINELTCA 78


>gi|325972020|ref|YP_004248211.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324027258|gb|ADY14017.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 754

 Score = 38.1 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 43/173 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
           ++ +++ + E +L ++  R   V A AGSGKT ++  ++   +     P+  +L +T T 
Sbjct: 8   LEALNEQQREAVLENE--RPLLVLAGAGSGKTRVITTKIAYAVEKLGIPAYKILAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA+EM  RV  ++   S + D                                      
Sbjct: 66  KAASEMKERVGVMLDGNSQVED------------------------------------CT 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA----KKSTLASIM 181
           ++T H+F   ++++F  E  + S+F I D++ S  L+       KK  L  +M
Sbjct: 90  IRTFHSFGAWLLRRFGSEIGLASNFTIYDDDDSLSLLASCFPNYKKRELDPVM 142


>gi|227893040|ref|ZP_04010845.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM
          16047]
 gi|227865153|gb|EEJ72574.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM
          16047]
          Length = 748

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAATEMRDR 73


>gi|166033310|ref|ZP_02236139.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC
          27755]
 gi|166027667|gb|EDR46424.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC
          27755]
          Length = 763

 Score = 38.1 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  +L +T T  AAAEM  RV  ++
Sbjct: 35 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAAEMRERVDNLV 86


>gi|309973157|gb|ADO96358.1| Exodeoxyribonuclease V, beta subunit [Haemophilus influenzae R2846]
          Length = 1211

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 32/146 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  -------AWSHL-------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
                  A++         +DE L+A    +        D+ +A H L    +      +
Sbjct: 80  DAIDKLIAFAETQDKSAFKNDEFLTALCDNL--------DIFEAIHRLKLAEQNMDLAAI 131

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAI 159
            TIH FC  ++ Q+   + I  HF +
Sbjct: 132 YTIHGFCRRMLMQYAFHSGI--HFNL 155


>gi|317486423|ref|ZP_07945250.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316922333|gb|EFV43592.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 1075

 Score = 38.1 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A  GSGKT  LV RV RLL        +L +T T+ AAAE+  R+
Sbjct: 506 VLAGPGSGKTRTLVGRVQRLLKDGIPAQRILAVTFTRRAAAELRERL 552


>gi|300813299|ref|ZP_07093654.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral
          taxon 836 str. F0141]
 gi|300512570|gb|EFK39715.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral
          taxon 836 str. F0141]
          Length = 720

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
          ID ++  + E LL ++      + A AGSGKT ++  ++   L+ N  PS  +L +T T 
Sbjct: 3  IDSLNDKQKEALLYNEG--PLLILAGAGSGKTKVVTSKIA-YLIENEVPSWRILAITFTN 59

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV  +I
Sbjct: 60 KAAREMRERVAMLI 73


>gi|161507067|ref|YP_001577021.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
 gi|160348056|gb|ABX26730.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
          Length = 748

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA EM  R
Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMRER 73


>gi|90416555|ref|ZP_01224486.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2207]
 gi|90331754|gb|EAS46982.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2207]
          Length = 676

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 14/103 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITA------ 88
           V A AGSGKT ++ Q++  L+     P+  +  +T T  AA EM  RV  +++       
Sbjct: 22  VLAGAGSGKTSVITQKIAYLVEECGIPARNIAAVTFTNKAAREMKARVASLLSGADGRGL 81

Query: 89  ----WSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITIL 125
               + +L   I+ +EI K  G KP  S  D    R+LL  +L
Sbjct: 82  TVSTFHNLGLNIIRSEI-KALGFKPGFSILDQEDCRNLLKELL 123


>gi|87302318|ref|ZP_01085143.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701]
 gi|87283243|gb|EAQ75199.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701]
          Length = 1285

 Score = 38.1 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-------LEIIT 87
           + A+AG+GKT  L   VLRL+         LL +T TKAAAAE+  R+        +++ 
Sbjct: 21  IEASAGTGKTFTLAHLVLRLVGERQLSLRALLVVTFTKAAAAELRDRIGRRLQQAQQLLQ 80

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                  E L  E+ +  G  P + +  + R  L+  LE      + TIH FC   +Q+ 
Sbjct: 81  TPDPAGHEGLDQELKEWLGNIPPQ-NYERLRAQLLLALEELDAADITTIHGFCHRSLQRQ 139

Query: 148 PLEANI 153
            LEA +
Sbjct: 140 ALEAGL 145


>gi|116511959|ref|YP_809175.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp.
          cremoris SK11]
 gi|116107613|gb|ABJ72753.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp.
          cremoris SK11]
          Length = 758

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL 83
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERAL 73


>gi|323467081|gb|ADX70768.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus H10]
          Length = 753

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L +R+  L+  N   P  +L +T T  AA EM  R
Sbjct: 32 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMRER 78


>gi|296392994|ref|YP_003657878.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296180141|gb|ADG97047.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 1062

 Score = 38.1 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAA 74
          +   + EQ++ + P  S+ V A AGSGKT  +  RV+  L+AN    P  +L LT T++A
Sbjct: 15 VPSEEQEQVIGA-PLASSAVLAGAGSGKTETVAARVV-WLIANGLVEPEHVLGLTFTRSA 72

Query: 75 AAEMSHRV 82
          A  M  RV
Sbjct: 73 ARGMLARV 80


>gi|238855395|ref|ZP_04645706.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3]
 gi|260665364|ref|ZP_05866212.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US]
 gi|282932094|ref|ZP_06337551.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
 gi|313473070|ref|ZP_07813554.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153]
 gi|238831993|gb|EEQ24319.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3]
 gi|239528703|gb|EEQ67704.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153]
 gi|260560868|gb|EEX26844.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US]
 gi|281303773|gb|EFA95918.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
          Length = 754

 Score = 38.1 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 43/142 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEMKERVQKLL-------- 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV--QTIHAFCEAIMQQFPLEAN 152
                                            P G  V   T HA C  I+++   +  
Sbjct: 79  --------------------------------GPAGQDVWMSTFHALCVRILRRDADKIG 106

Query: 153 ITSHFAIADEEQSKKLIEEAKK 174
            + +F+IAD  +   LI+  +K
Sbjct: 107 YSRNFSIADSSEQVTLIKHIEK 128


>gi|242808279|ref|XP_002485129.1| ATP-depentend DNA helicase, putative [Talaromyces stipitatus ATCC
          10500]
 gi|218715754|gb|EED15176.1| ATP-depentend DNA helicase, putative [Talaromyces stipitatus ATCC
          10500]
          Length = 1033

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEM 78
          +++   + PT    V A  GSGKT  L  RV  LL +  H   P  ++C T T  A+ EM
Sbjct: 13 AQRTAVTSPTSVLQVLAPPGSGKTKTLTARVAYLLSSKHHGFRPQDVICCTFTIKASREM 72

Query: 79 SHRVLEIITAWSHL-SDEILS 98
            R+       SHL  D+++S
Sbjct: 73 RERL-------SHLIGDQVVS 86


>gi|121604380|ref|YP_981709.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120593349|gb|ABM36788.1| ATP-dependent DNA helicase UvrD [Polaromonas naphthalenivorans
          CJ2]
          Length = 781

 Score = 38.1 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          P   A + A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 4  PATHALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKAAKEMLTRL 57


>gi|6900322|emb|CAB71343.1| putative ATP-dependent nuclease [Lactobacillus delbrueckii subsp.
          bulgaricus]
          Length = 64

 Score = 38.1 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
          VSA+AGSGKT +LV+RV+R ++ +    + LL +T T+AAA+E
Sbjct: 22 VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASE 64


>gi|88808097|ref|ZP_01123608.1| UvrD/REP helicase [Synechococcus sp. WH 7805]
 gi|88788136|gb|EAR19292.1| UvrD/REP helicase [Synechococcus sp. WH 7805]
          Length = 794

 Score = 38.1 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 22/146 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  + A P+ +L +T T  AA EM  R LE+         
Sbjct: 24  VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEL--------- 73

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA- 151
            +L+  + + Q  +P +     + R L   I  E    L + T HA   A M ++ ++  
Sbjct: 74  -LLAQRLAQSQFGQPWSTLPPVEQRQLRSRIYREVTKELWIGTFHALF-ARMLRYDIDKF 131

Query: 152 ------NITSHFAIADEEQSKKLIEE 171
                 + T  F+I DE  ++ L++E
Sbjct: 132 KDSEGLSWTKQFSIYDEADAQSLVKE 157


>gi|331085909|ref|ZP_08334992.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406832|gb|EGG86337.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 741

 Score = 38.1 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV +I+
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAAGEMRERVDDIV 75


>gi|313117106|ref|YP_004038230.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM
           11551]
 gi|312295058|gb|ADQ69094.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM
           11551]
          Length = 1180

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT  L  RV  L+        +L +T T+ AA EMS R+ E+ 
Sbjct: 449 VIAGAGTGKTFSLSCRVKYLVEEGVSEDDILAMTFTRKAATEMSDRLDEMF 499


>gi|296158754|ref|ZP_06841583.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1]
 gi|295890959|gb|EFG70748.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1]
          Length = 1230

 Score = 38.1 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   L  +     
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87

Query: 92  LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           + D+     + ++      P +  +   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 88  MDDDGGDPFVRRLFETTLAPERGIEREAALKMVRRALRTFDQAAIHTIHAFCQRALQE 145


>gi|159480686|ref|XP_001698413.1| N-ethylmaleimide sensitive fusion protein [Chlamydomonas
           reinhardtii]
 gi|158282153|gb|EDP07906.1| N-ethylmaleimide sensitive fusion protein [Chlamydomonas
           reinhardtii]
          Length = 719

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           A M H ++    A+ HL  E L   + +++         S    LL  +LE P G     
Sbjct: 480 AYMGHGIISCGEAFDHLR-ETLGMLVQQVRA--------SDKTPLLSVVLEGPVGSGKSA 530

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSK-----KLIEEAKKSTLASIMLDNNEEL 188
           + A   AI   FP    +TS   +   EQ+K     K+ E+A KS ++ ++LD+ E L
Sbjct: 531 LAA-SAAIGSDFPFLKVVTSESMVGFSEQAKASQITKVFEDAYKSPMSVVILDDIERL 587


>gi|91790119|ref|YP_551071.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91699344|gb|ABE46173.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 716

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  ++ RL+ +      +  +T T  AAAEM  R   +I
Sbjct: 42 VLAGAGSGKTRVITHKIGRLIQSGLKAEQIAAITFTNKAAAEMRERAKSLI 92


>gi|37525714|ref|NP_929058.1| DNA helicase IV [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785143|emb|CAE14072.1| DNA helicase IV [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 684

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHTKAAAAEM 78
            +S+ L   +   S  V A AGSGKT +LV R    LLL  A P  +L L  +  A  EM
Sbjct: 198 NRSQSLAVINGENSVLVLAGAGSGKTSVLVARAGWLLLLQQAIPEQILLLAFSHQAVNEM 257

Query: 79  SHRV 82
           + R+
Sbjct: 258 NERI 261


>gi|238749724|ref|ZP_04611229.1| Helicase IV (75 kDa helicase) [Yersinia rohdei ATCC 43380]
 gi|238712379|gb|EEQ04592.1| Helicase IV (75 kDa helicase) [Yersinia rohdei ATCC 43380]
          Length = 684

 Score = 38.1 bits (87), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL  N A P  +L L   + AA EM+ R+
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261


>gi|89055268|ref|YP_510719.1| ATP-dependent DNA helicase Rep [Jannaschia sp. CCS1]
 gi|88864817|gb|ABD55694.1| ATP-dependent DNA helicase, Rep family [Jannaschia sp. CCS1]
          Length = 817

 Score = 38.1 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 38/135 (28%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT  L  R+  L+    A P+ +L +T T  AA EM  RV              
Sbjct: 53  AGAGTGKTRALTARIAHLMSTGTARPNEILAVTFTNKAAREMKTRV-------------- 98

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                 HLL    E  G   + T HA C  ++++    A + S+
Sbjct: 99  ---------------------GHLLGQPAE--GMPWLGTFHAICVKLLRRHAELAGLKSN 135

Query: 157 FAIADEEQSKKLIEE 171
           F I D +   +L+++
Sbjct: 136 FTILDTDDQTRLMKQ 150


>gi|294102626|ref|YP_003554484.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261]
 gi|293617606|gb|ADE57760.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261]
          Length = 1173

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          VSA AG+GKT  L  R + +L+   A  + +L LT T+ AA EM+ R+  ++
Sbjct: 35 VSAGAGTGKTWTLAWRFIWILVTGRADTNEILTLTFTEKAALEMAERIKNLL 86


>gi|261493211|ref|ZP_05989738.1| Rep family ATP-dependent helicase [Mannheimia haemolytica
          serotype A2 str. BOVINE]
 gi|261311061|gb|EEY12237.1| Rep family ATP-dependent helicase [Mannheimia haemolytica
          serotype A2 str. BOVINE]
          Length = 672

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 22 SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79
          S+Q  A + T+ A  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM 
Sbjct: 5  SQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMR 64

Query: 80 HRV 82
           RV
Sbjct: 65 ERV 67


>gi|240172137|ref|ZP_04750796.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478]
          Length = 1066

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 29/116 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AG+GKT  +  RV+  L+AN  A P  +L LT T+ AA ++  RV           
Sbjct: 11  VIAGAGAGKTETMAARVV-WLIANGYAEPGQVLGLTFTRKAAGQLLRRV----------- 58

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                + + ++ G +P  +             E+ G   V T HAF  ++++ + L
Sbjct: 59  ----RSRLARLAGLEPGAA-----------ACESAGTPVVSTYHAFAGSLLRDYGL 99


>gi|225568813|ref|ZP_03777838.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM
          15053]
 gi|225162312|gb|EEG74931.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM
          15053]
          Length = 743

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDNIV 75


>gi|74318467|ref|YP_316207.1| ATP-dependent DNA helicase UvrD [Thiobacillus denitrificans ATCC
          25259]
 gi|74057962|gb|AAZ98402.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC
          25259]
          Length = 726

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          P  SA + A AGSGKT +L  R++ L+      P  +L +T T  AA EM  R+
Sbjct: 26 PHESALILAGAGSGKTRVLTTRIVWLVQTGQVSPHGILAVTFTNKAAKEMLTRI 79


>gi|5542368|pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp
          Length = 167

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+   L+A  H  P  +L +T T  AA EM  RV  ++  
Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82


>gi|71275278|ref|ZP_00651565.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon]
 gi|71900136|ref|ZP_00682277.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
 gi|71164087|gb|EAO13802.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon]
 gi|71730085|gb|EAO32175.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
          Length = 658

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++V+++  L+ ++ +P+  +  +T T  +A EM  RV + I
Sbjct: 21 VLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQI 72


>gi|71902080|ref|ZP_00684118.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
 gi|71728157|gb|EAO30350.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
          Length = 658

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++V+++  L+ ++ +P+  +  +T T  +A EM  RV + I
Sbjct: 21 VLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQI 72


>gi|22126608|ref|NP_670031.1| DNA helicase IV [Yersinia pestis KIM 10]
 gi|45441158|ref|NP_992697.1| DNA helicase IV [Yersinia pestis biovar Microtus str. 91001]
 gi|108806729|ref|YP_650645.1| DNA helicase IV [Yersinia pestis Antiqua]
 gi|108812700|ref|YP_648467.1| DNA helicase IV [Yersinia pestis Nepal516]
 gi|145598818|ref|YP_001162894.1| DNA helicase IV [Yersinia pestis Pestoides F]
 gi|162421603|ref|YP_001607560.1| DNA helicase IV [Yersinia pestis Angola]
 gi|166011987|ref|ZP_02232885.1| helicase IV [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211746|ref|ZP_02237781.1| helicase IV [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402312|ref|ZP_02307780.1| helicase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167423870|ref|ZP_02315623.1| helicase IV [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229894374|ref|ZP_04509557.1| DNA helicase IV [Yersinia pestis Pestoides A]
 gi|229903096|ref|ZP_04518211.1| DNA helicase IV [Yersinia pestis Nepal516]
 gi|270486898|ref|ZP_06203972.1| UvrD/REP helicase [Yersinia pestis KIM D27]
 gi|294503424|ref|YP_003567486.1| DNA helicase IV [Yersinia pestis Z176003]
 gi|21959616|gb|AAM86282.1|AE013875_11 DNA helicase IV [Yersinia pestis KIM 10]
 gi|45436018|gb|AAS61574.1| DNA helicase IV [Yersinia pestis biovar Microtus str. 91001]
 gi|108776348|gb|ABG18867.1| helicase IV [Yersinia pestis Nepal516]
 gi|108778642|gb|ABG12700.1| putative helicase IV [Yersinia pestis Antiqua]
 gi|145210514|gb|ABP39921.1| helicase IV [Yersinia pestis Pestoides F]
 gi|162354418|gb|ABX88366.1| helicase IV [Yersinia pestis Angola]
 gi|165989154|gb|EDR41455.1| helicase IV [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207517|gb|EDR51997.1| helicase IV [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167048278|gb|EDR59686.1| helicase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056719|gb|EDR66482.1| helicase IV [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229679876|gb|EEO75977.1| DNA helicase IV [Yersinia pestis Nepal516]
 gi|229703772|gb|EEO90788.1| DNA helicase IV [Yersinia pestis Pestoides A]
 gi|262361467|gb|ACY58188.1| DNA helicase IV [Yersinia pestis D106004]
 gi|262365394|gb|ACY61951.1| DNA helicase IV [Yersinia pestis D182038]
 gi|270335402|gb|EFA46179.1| UvrD/REP helicase [Yersinia pestis KIM D27]
 gi|294353883|gb|ADE64224.1| DNA helicase IV [Yersinia pestis Z176003]
 gi|320015694|gb|ADV99265.1| DNA helicase IV [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 684

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL  N A P  +L L   + AA EM+ R+
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261


>gi|294012022|ref|YP_003545482.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
 gi|292675352|dbj|BAI96870.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
          Length = 1134

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 25/47 (53%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           + A  G+GKT  L  RV  LL     P  +L LT +  AA EM+ R+
Sbjct: 214 LEAGPGTGKTQTLTARVEGLLAEGVDPRRILLLTFSNKAAGEMAERI 260


>gi|168186071|ref|ZP_02620706.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str.
           Eklund]
 gi|169296014|gb|EDS78147.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str.
           Eklund]
          Length = 760

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 39/140 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  ++     P   +L +T T  AA EM  R+ ++++       
Sbjct: 24  VLAGAGSGKTRVLTYRIAHMIEDLEIPQYNILAITFTNKAAGEMKDRIKKLVS------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E    + V T H+ C  I+++   +    
Sbjct: 77  -------------------------------ENIDSMWVSTFHSCCVRILRREIDKLGYN 105

Query: 155 SHFAIADEEQSKKLIEEAKK 174
            +FAI D    K L+++  K
Sbjct: 106 KNFAIYDSSDQKNLVKQCMK 125


>gi|170731281|ref|YP_001776714.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
 gi|167966074|gb|ACA13084.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
          Length = 658

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++V+++  L+ ++ +P+  +  +T T  +A EM  RV + I
Sbjct: 21 VLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQI 72


>gi|145641651|ref|ZP_01797228.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
 gi|145273698|gb|EDK13567.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.4-21]
          Length = 445

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 28/144 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLK----------VQT 135
                + + L+A   K Q K   K+D  ++   H L  I E    LK          + T
Sbjct: 80  D----AIDKLTA-FAKTQDKSAFKNDEFLTALCHDL-DIFEAIHRLKLAEQNMDLAAIYT 133

Query: 136 IHAFCEAIMQQFPLEANITSHFAI 159
           IH FC  ++ Q+   + I  HF +
Sbjct: 134 IHGFCRRMLMQYAFHSGI--HFNL 155


>gi|28199902|ref|NP_780216.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa
          Temecula1]
 gi|182682653|ref|YP_001830813.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23]
 gi|28058023|gb|AAO29865.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa
          Temecula1]
 gi|182632763|gb|ACB93539.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23]
 gi|307578933|gb|ADN62902.1| ATP-dependent DNA helicase [Xylella fastidiosa subsp. fastidiosa
          GB514]
          Length = 658

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++V+++  L+ ++ +P+  +  +T T  +A EM  RV + I
Sbjct: 21 VLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQI 72


>gi|152974126|ref|YP_001373643.1| ATP-dependent DNA helicase PcrA [Bacillus cereus subsp. cytotoxis
          NVH 391-98]
 gi|152022878|gb|ABS20648.1| ATP-dependent DNA helicase PcrA [Bacillus cytotoxicus NVH 391-98]
          Length = 741

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNILAITFTNKAAREMRERI 75


>gi|325662111|ref|ZP_08150729.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325471560|gb|EGC74780.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 741

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV +I+
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAAGEMRERVDDIV 75


>gi|269218850|ref|ZP_06162704.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848
          str. F0332]
 gi|269211961|gb|EEZ78301.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848
          str. F0332]
          Length = 831

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L  R+  L+ +  A P  +L +T T  AA EM  R+
Sbjct: 29 VVAGAGSGKTRVLTSRIGYLIASGRAAPGQILAITFTNKAAREMRERL 76


>gi|300771529|ref|ZP_07081404.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300761518|gb|EFK58339.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 1075

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AGSGKT  L    L LL  + +    +L +T T  A  EM  R+L+++   ++   
Sbjct: 10  LKASAGSGKTFSLAVHYLTLLFHHEYKYREILAVTFTNKATEEMKTRILDVLKGLANNDP 69

Query: 95  EILSAEITKIQGKK-PNKSDM---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +    ++  K  P  S +    +A+ +   IL       V TI  F + +++ F  E
Sbjct: 70  SPGTDNYRQLLLKAYPQYSHIELQERAQKIYRRILHDYSHFSVSTIDGFVQKVIRGFAFE 129

Query: 151 ANITSHFAI 159
             + + +++
Sbjct: 130 LGLDAAYSL 138


>gi|229083589|ref|ZP_04215918.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44]
 gi|228699721|gb|EEL52377.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44]
          Length = 745

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|229101109|ref|ZP_04231875.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28]
 gi|228682237|gb|EEL36348.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28]
          Length = 749

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|229095008|ref|ZP_04226004.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29]
 gi|229113961|ref|ZP_04243387.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3]
 gi|228669420|gb|EEL24836.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3]
 gi|228688338|gb|EEL42220.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29]
          Length = 749

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|257790705|ref|YP_003181311.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257474602|gb|ACV54922.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 813

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  L+   +  P  +L +T T  AAAEM  R+  ++        
Sbjct: 25  VLAGAGSGKTRVLTYRIANLIENHDVAPWEILAITFTNKAAAEMRERLNGLVG------- 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                + R           G+ V T H+ C  +++    +   T
Sbjct: 78  --------------------PRCR-----------GMWVSTFHSMCVRMLRSDAEKLGFT 106

Query: 155 SHFAIADEEQSKKLIEE 171
            +F I D +  K+L +E
Sbjct: 107 RNFTIYDTDDQKRLYKE 123


>gi|167737949|ref|ZP_02410723.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 14]
          Length = 610

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDGGGDPFIARLFETTLAPGRGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|146276730|ref|YP_001166889.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554971|gb|ABP69584.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 783

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A AG+GKT  L  R++ LL    A P+ +L +T T  AA EM  RV  ++
Sbjct: 51  AGAGTGKTKALTARIVHLLDSGRARPNEILAVTFTNKAAREMKDRVARML 100


>gi|116620297|ref|YP_822453.1| ATP-dependent DNA helicase Rep [Candidatus Solibacter usitatus
          Ellin6076]
 gi|116223459|gb|ABJ82168.1| ATP-dependent DNA helicase, Rep family [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 788

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT ++  R+  ++ + +  PS +L +T T  AA EM  RV  ++
Sbjct: 24 ILAGAGSGKTRVITHRIAHIITSRHVPPSAVLAVTFTNKAAKEMRERVAALL 75


>gi|228906067|ref|ZP_04069956.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200]
 gi|228853476|gb|EEM98244.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|238789275|ref|ZP_04633062.1| Helicase IV (75 kDa helicase) [Yersinia frederiksenii ATCC 33641]
 gi|238722607|gb|EEQ14260.1| Helicase IV (75 kDa helicase) [Yersinia frederiksenii ATCC 33641]
          Length = 684

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL  N A P  +L L   + AA EM+ R+
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261


>gi|51595798|ref|YP_069989.1| DNA helicase IV [Yersinia pseudotuberculosis IP 32953]
 gi|153948937|ref|YP_001401501.1| DNA helicase IV [Yersinia pseudotuberculosis IP 31758]
 gi|170024850|ref|YP_001721355.1| DNA helicase IV [Yersinia pseudotuberculosis YPIII]
 gi|186894881|ref|YP_001871993.1| DNA helicase IV [Yersinia pseudotuberculosis PB1/+]
 gi|51589080|emb|CAH20698.1| putative DNA helicase IV [Yersinia pseudotuberculosis IP 32953]
 gi|152960432|gb|ABS47893.1| helicase IV [Yersinia pseudotuberculosis IP 31758]
 gi|169751384|gb|ACA68902.1| UvrD/REP helicase [Yersinia pseudotuberculosis YPIII]
 gi|186697907|gb|ACC88536.1| UvrD/REP helicase [Yersinia pseudotuberculosis PB1/+]
          Length = 684

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL  N A P  +L L   + AA EM+ R+
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261


>gi|332184910|ref|ZP_08386659.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
 gi|332014634|gb|EGI56690.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
          Length = 765

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          ++  + E +L +D      V A AG+GKT  L  R+  LL    A PS +L +T T  AA
Sbjct: 21 LNPAQREAVLTTDG--PVLVLAGAGTGKTAALTARLAHLLYTRKAWPSEILSVTFTNKAA 78

Query: 76 AEMSHRVLEII 86
           EM  RV  ++
Sbjct: 79 REMRERVGRLV 89


>gi|254510274|ref|ZP_05122341.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
 gi|221533985|gb|EEE36973.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
          Length = 971

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 21/120 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV-------LEIIT 87
           V A AGSGKT ++  +   L+      PS +L L + K AA EMS R+       LE  T
Sbjct: 223 VLAGAGSGKTSVITAKAGYLIKTKTRAPSEILLLAYAKDAAKEMSERIELRCGEPLEART 282

Query: 88  AWSHLSDEILSAEITKIQGKKP--------NKSDMSKARHLLITILETPGGLKVQTIHAF 139
            +  L++ I+      ++G KP        +K+ ++  + +LI ++ T  G+    I  F
Sbjct: 283 -FHALANGIIGI----VEGSKPALAKHATDDKAYLALIKDILIALVRTTAGVSRAIIGWF 337


>gi|261496545|ref|ZP_05992925.1| Rep family ATP-dependent helicase [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|261307748|gb|EEY09071.1| Rep family ATP-dependent helicase [Mannheimia haemolytica
          serotype A2 str. OVINE]
          Length = 672

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 22 SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79
          S+Q  A + T+ A  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM 
Sbjct: 5  SQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMR 64

Query: 80 HRV 82
           RV
Sbjct: 65 ERV 67


>gi|237713878|ref|ZP_04544359.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409213|ref|ZP_06085757.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647413|ref|ZP_06725001.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC 2a]
 gi|294809804|ref|ZP_06768486.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens SD
            CC 1b]
 gi|229446034|gb|EEO51825.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352960|gb|EEZ02056.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637240|gb|EFF55670.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC 2a]
 gi|294442990|gb|EFG11775.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens SD
            CC 1b]
          Length = 1603

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36   VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            V+A  GSGKT +LV ++  LLL  +     LL LT ++AAA E   R+ ++I
Sbjct: 1068 VAAGPGSGKTRLLVHKLASLLLMEDVKHEQLLMLTFSRAAANEFRSRLHDLI 1119


>gi|196040164|ref|ZP_03107466.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99]
 gi|196029019|gb|EDX67624.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|254362674|ref|ZP_04978761.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213]
 gi|153094293|gb|EDN75157.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213]
          Length = 672

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 22 SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79
          S+Q  A + T+ A  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM 
Sbjct: 5  SQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMR 64

Query: 80 HRV 82
           RV
Sbjct: 65 ERV 67


>gi|229015685|ref|ZP_04172668.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273]
 gi|228745602|gb|EEL95621.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|229028144|ref|ZP_04184286.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271]
 gi|228733162|gb|EEL84002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|229089419|ref|ZP_04220690.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42]
 gi|228693896|gb|EEL47588.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|225873408|ref|YP_002754867.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793677|gb|ACO33767.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 943

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 45/143 (31%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT ++  R+  L+      P ++L +T T  AA EM+ RV  +I   S L+ 
Sbjct: 25  ILAGAGSGKTRVITHRIAYLIQERGVAPDSILAVTFTNKAAKEMAERVDALI-GHSTLAK 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA--- 151
            +L+                                    T H+FC  ++++  +EA   
Sbjct: 84  PVLA------------------------------------TFHSFCVRMLRR-DIEALRI 106

Query: 152 ---NITSHFAIADEEQSKKLIEE 171
               +T  FAI DE   + L+++
Sbjct: 107 GNEGLTKTFAIYDESDQQSLVKQ 129


>gi|228899022|ref|ZP_04063295.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
 gi|228860597|gb|EEN04984.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
          Length = 749

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|196045338|ref|ZP_03112570.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108]
 gi|196023922|gb|EDX62597.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|75759917|ref|ZP_00739988.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
          35646]
 gi|218895412|ref|YP_002443823.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842]
 gi|74492584|gb|EAO55729.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
          35646]
 gi|218541975|gb|ACK94369.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|312879906|ref|ZP_07739706.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
 gi|310783197|gb|EFQ23595.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
          Length = 659

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          S  V A AGSGKT +L +++  L+      P  +L +T T  AA EM  RV +++
Sbjct: 27 SQLVLAGAGSGKTRVLTRKIAFLIRELGISPGRILAVTFTNKAAGEMRERVEKLL 81


>gi|257052787|ref|YP_003130620.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691550|gb|ACV11887.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 948

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 26/48 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          V A AG+GKT  + +R   LL     P  +L +T T  AA EM  RV+
Sbjct: 23 VDAGAGTGKTFAITRRYANLLSEGYEPDDVLLVTFTNNAATEMKERVV 70


>gi|218231540|ref|YP_002365134.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264]
 gi|218159497|gb|ACK59489.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|113954302|ref|YP_730266.1| exodeoxyribonuclease V subunit beta [Synechococcus sp. CC9311]
 gi|113881653|gb|ABI46611.1| exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9311]
          Length = 1212

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 27/150 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-------LEII- 86
           + A+AG+GKT  L   VLRL+     +   LL +T T++AAAE+  R+       L+ + 
Sbjct: 19  LEASAGTGKTFALAHLVLRLVTERKLNLKELLVVTFTESAAAELRDRIGRRLNDALQALL 78

Query: 87  ---------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK---VQ 134
                       S  +D ++  E   + G+ PN       R +   +LE   GL+   + 
Sbjct: 79  QNQTNNSNSQTDSSPTDAVME-EWLILHGQDPNTR-----RTIASNLLEALEGLERADIT 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
           TIH FC   +++  L+        + ++ Q
Sbjct: 133 TIHGFCRRSLRRQALQNGTAMEVCLENDSQ 162


>gi|52144943|ref|YP_081887.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|229154058|ref|ZP_04282183.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342]
 gi|51978412|gb|AAU19962.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|228629338|gb|EEK86040.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|297581208|ref|ZP_06943132.1| superfamily II DNA helicase [Vibrio cholerae RC385]
 gi|297534524|gb|EFH73361.1| superfamily II DNA helicase [Vibrio cholerae RC385]
          Length = 1756

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 9    EHS--ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
            EHS    ++ ++    E ++ S P +S  V A  GSGK+ +++ R   LL +    P+ +
Sbjct: 1107 EHSWKRIVEALNNPTQESIVQSSPEQSLLVLAGPGSGKSKVIIHRCAYLLRVKQVDPAKV 1166

Query: 66   LCLTHTKAAAAEMSHRVLEII 86
            + L +   AA  +  R+++++
Sbjct: 1167 MLLCYNHNAALSLRKRLVDLL 1187


>gi|293189251|ref|ZP_06607974.1| putative DNA helicase II [Actinomyces odontolyticus F0309]
 gi|292821714|gb|EFF80650.1| putative DNA helicase II [Actinomyces odontolyticus F0309]
          Length = 674

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT  +  R+       A  PS +L +T T+ AA EM HR+ ++         
Sbjct: 30  VLAGAGTGKTRAITYRIAYGADVGAFDPSNVLAVTFTQRAAFEMRHRLAQL--------- 80

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
                 + K Q +  + + + + RH   T++  P
Sbjct: 81  -----GVPKAQARTFHSAALRQLRHFWPTVVGGP 109


>gi|228913033|ref|ZP_04076672.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228846438|gb|EEM91451.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 747

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|228919227|ref|ZP_04082597.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228840334|gb|EEM85605.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|229176883|ref|ZP_04304279.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W]
 gi|228606556|gb|EEK63981.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W]
          Length = 749

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|206974372|ref|ZP_03235289.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97]
 gi|217957863|ref|YP_002336407.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187]
 gi|206747612|gb|EDZ59002.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97]
 gi|217067002|gb|ACJ81252.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|110680702|ref|YP_683709.1| ATP-dependent DNA helicase [Roseobacter denitrificans OCh 114]
 gi|109456818|gb|ABG33023.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
            denitrificans OCh 114]
          Length = 1770

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 15   DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
            DL ++T+ E ++A D  + +  V A  GSGKT +LV RV  LL +    P  +L L + +
Sbjct: 1157 DLGNKTQ-ESIVADDRASTNVLVLAGPGSGKTRVLVHRVAYLLRIKREDPRGILVLAYNR 1215

Query: 73   AAAAEMSHRVLEII 86
             AA+E+  R+  ++
Sbjct: 1216 HAASEIRTRLAALV 1229


>gi|94994523|ref|YP_602621.1| DNA helicase II [Streptococcus pyogenes MGAS10750]
 gi|94548031|gb|ABF38077.1| DNA helicase II [Streptococcus pyogenes MGAS10750]
          Length = 772

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALSLNPA 78


>gi|30018548|ref|NP_830179.1| DNA helicase II [Bacillus cereus ATCC 14579]
 gi|229042192|ref|ZP_04189946.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676]
 gi|229107966|ref|ZP_04237593.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15]
 gi|229125791|ref|ZP_04254817.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4]
 gi|229143089|ref|ZP_04271522.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24]
 gi|229148694|ref|ZP_04276944.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550]
 gi|29894089|gb|AAP07380.1| DNA helicase II [Bacillus cereus ATCC 14579]
 gi|228634702|gb|EEK91281.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550]
 gi|228640362|gb|EEK96759.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24]
 gi|228657648|gb|EEL13460.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4]
 gi|228675469|gb|EEL30686.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15]
 gi|228727127|gb|EEL78330.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|206968237|ref|ZP_03229193.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134]
 gi|228950847|ref|ZP_04112970.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|229068047|ref|ZP_04201355.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185]
 gi|229077650|ref|ZP_04210280.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2]
 gi|229188562|ref|ZP_04315601.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876]
 gi|206737157|gb|EDZ54304.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134]
 gi|228594751|gb|EEK52531.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876]
 gi|228705591|gb|EEL57947.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2]
 gi|228715055|gb|EEL66922.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185]
 gi|228808776|gb|EEM55272.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|296501120|ref|YP_003662820.1| DNA helicase II [Bacillus thuringiensis BMB171]
 gi|296322172|gb|ADH05100.1| DNA helicase II [Bacillus thuringiensis BMB171]
          Length = 749

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|229171137|ref|ZP_04298731.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3]
 gi|228612315|gb|EEK69543.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|193214838|ref|YP_001996037.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
 gi|193088315|gb|ACF13590.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
          Length = 700

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 18 SQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          S+  S Q  A   T  A  V A AG+GKT  L  RV  L+ +    S +L LT T+ AA 
Sbjct: 31 SELNSAQFEAVTTTDGALLVVAGAGTGKTKTLTYRVGYLIESGVPASDILLLTFTRRAAQ 90

Query: 77 EMSHRVLEI 85
          EM  R   I
Sbjct: 91 EMLARAAAI 99


>gi|324324304|gb|ADY19564.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 749

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|315185499|gb|EFU19269.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 683

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 40/133 (30%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  ++  L+ A   P+ ++L +T T  AA EM  R L++           
Sbjct: 29  AGAGSGKTRVITTKIAYLVDALGIPARSILAVTFTNKAAREMYERALQL----------- 77

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                       P                    G+ ++T H+F   +++ +     +   
Sbjct: 78  -----------SPRTE-----------------GVMIKTFHSFGVWLLRLYGERLGLARD 109

Query: 157 FAIADEEQSKKLI 169
           FAI D+E ++ L+
Sbjct: 110 FAIYDDEDARALL 122


>gi|294621038|ref|ZP_06700230.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317]
 gi|291599352|gb|EFF30377.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317]
          Length = 326

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I+ +
Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81


>gi|239787415|emb|CAX83890.1| Exodeoxyribonuclease V, beta subunit [uncultured bacterium]
          Length = 1228

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 16/132 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRV-LEI 85
           + A+AG+GKT+ +    +RL+L +   ST         +L +T T+AA  E+  R+   +
Sbjct: 21  IEASAGTGKTYTIALLYVRLVLGHGAGSTGRAPLTPPEILVVTFTRAATRELRERIRARL 80

Query: 86  ITAWSHLSDEILSAE-----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
             A +   D    A      +  ++   P ++    AR L +   E      V+TIH +C
Sbjct: 81  AEAAACFRDAATDAAGWDPLLRALRAAYPPEAWTGCARRLQLAA-EWMDEASVETIHGWC 139

Query: 141 EAIMQQFPLEAN 152
             ++Q+   +++
Sbjct: 140 HRMLQEHAFDSD 151


>gi|228956727|ref|ZP_04118513.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228802915|gb|EEM49747.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 761

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|229119951|ref|ZP_04249206.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201]
 gi|228663417|gb|EEL19002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|218438504|ref|YP_002376833.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424]
 gi|218171232|gb|ACK69965.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424]
          Length = 772

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT  L  R+  L+      P  +L +T T  AA EM  R+  I 
Sbjct: 28 VVAGAGSGKTRALTYRIAHLIRYHQVDPENILAVTFTNKAAREMKERIERIF 79


>gi|325127936|gb|EGC50839.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis N1568]
          Length = 1010

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  AW--SHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|320353212|ref|YP_004194551.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
 gi|320121714|gb|ADW17260.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
          Length = 1095

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A  G+GKTH LV RV R    +  P T+  +T T  AAAE+  R+ E
Sbjct: 487 VQAGPGTGKTHTLVSRVRRTAGRSTRPCTV--ITFTNKAAAEVRERLGE 533


>gi|300118924|ref|ZP_07056635.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1]
 gi|298723540|gb|EFI64271.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1]
          Length = 747

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|261838752|gb|ACX98518.1| DNA helicase II [Helicobacter pylori 51]
          Length = 681

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|229021877|ref|ZP_04178447.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272]
 gi|228739423|gb|EEL89849.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272]
          Length = 747

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|229182687|ref|ZP_04309928.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1]
 gi|228600772|gb|EEK58351.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1]
          Length = 749

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|228931796|ref|ZP_04094692.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228827776|gb|EEM73514.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 747

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|71903614|ref|YP_280417.1| DNA helicase II [Streptococcus pyogenes MGAS6180]
 gi|139473666|ref|YP_001128382.1| DNA helicase II [Streptococcus pyogenes str. Manfredo]
 gi|71802709|gb|AAX72062.1| DNA helicase II [Streptococcus pyogenes MGAS6180]
 gi|134271913|emb|CAM30151.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str.
          Manfredo]
          Length = 772

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALSLNPA 78


>gi|76801117|ref|YP_326125.1| helicase [Natronomonas pharaonis DSM 2160]
 gi|76556982|emb|CAI48556.1| probable helicase [Natronomonas pharaonis DSM 2160]
          Length = 613

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             GSGKT  L+ RV  +L      + +L +++T+AAAAE+  R+ E
Sbjct: 12 GGPGSGKTTALLDRVDEMLDDGVDVNDILVVSYTRAAAAEVRERLAE 58


>gi|319765417|ref|YP_004130918.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52]
 gi|317110283|gb|ADU92775.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52]
          Length = 724

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERV 76


>gi|311029280|ref|ZP_07707370.1| ATP-dependent DNA helicase PcrA [Bacillus sp. m3-13]
          Length = 767

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV +++
Sbjct: 29 IMAGAGSGKTKVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVEKLL 80


>gi|306827259|ref|ZP_07460546.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC
          10782]
 gi|304430406|gb|EFM33428.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC
          10782]
          Length = 772

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALSLNPA 78


>gi|301052017|ref|YP_003790228.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300374186|gb|ADK03090.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
          CI]
          Length = 747

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|315585865|gb|ADU40246.1| excision endonuclease subunit UvrD [Helicobacter pylori 35A]
          Length = 681

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|297528689|ref|YP_003669964.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3]
 gi|297251941|gb|ADI25387.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3]
          Length = 724

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERV 76


>gi|225075585|ref|ZP_03718784.1| hypothetical protein NEIFLAOT_00599 [Neisseria flavescens
           NRL30031/H210]
 gi|224953007|gb|EEG34216.1| hypothetical protein NEIFLAOT_00599 [Neisseria flavescens
           NRL30031/H210]
          Length = 389

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 37/185 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 20  IEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLN 79

Query: 88  AWSHLSD--EILSAEITKI---QGKKPN------------KSDMSKARHLLITILETP-- 128
               L    E +S  + K    + K P+            + D  ++ H LI  L+    
Sbjct: 80  EIQTLGGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALS 139

Query: 129 --GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--------AKKSTLA 178
                 + TIH FC+ +++ +           ++D+ + + LI          A  +TLA
Sbjct: 140 QFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLA 199

Query: 179 SIMLD 183
            ++ D
Sbjct: 200 QLVFD 204


>gi|56418810|ref|YP_146128.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
 gi|56378652|dbj|BAD74560.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 724

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERV 76


>gi|145636195|ref|ZP_01791865.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittHH]
 gi|145270717|gb|EDK10650.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittHH]
          Length = 343

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 24/142 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK----------VQTIH 137
                 D++++   T+ +    N   ++   H L  I E    LK          + TIH
Sbjct: 80  ---DAIDKLIAFAETQDKSAFKNDEFLTALCHDL-DIFEAIHRLKLAEQNMDLAAIYTIH 135

Query: 138 AFCEAIMQQFPLEANITSHFAI 159
            FC  ++ Q+   + I  HF +
Sbjct: 136 GFCRRMLMQYAFHSGI--HFNL 155


>gi|42779415|ref|NP_976662.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987]
 gi|42735331|gb|AAS39270.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987]
          Length = 747

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|229194679|ref|ZP_04321472.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293]
 gi|228588782|gb|EEK46807.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|261418602|ref|YP_003252284.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61]
 gi|261375059|gb|ACX77802.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61]
          Length = 725

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV
Sbjct: 30 IMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERV 77


>gi|167910323|ref|ZP_02497414.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           112]
          Length = 673

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|148826022|ref|YP_001290775.1| hypothetical protein CGSHiEE_05005 [Haemophilus influenzae PittEE]
 gi|148716182|gb|ABQ98392.1| hypothetical protein CGSHiEE_05005 [Haemophilus influenzae PittEE]
          Length = 1211

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 24/142 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK----------VQTIH 137
                 D++++   T+ +    N   ++   H L  I E    LK          + TIH
Sbjct: 80  ---DAIDKLIAFAETQDKSAFKNDEFLTALCHDL-DIFEAIHRLKLAEQNMDLAAIYTIH 135

Query: 138 AFCEAIMQQFPLEANITSHFAI 159
            FC  ++ Q+   + I  HF +
Sbjct: 136 GFCRRMLMQYAFHSGI--HFNL 155


>gi|148238576|ref|YP_001223963.1| UvrD/REP helicase [Synechococcus sp. WH 7803]
 gi|147847115|emb|CAK22666.1| UvrD/REP helicase [Synechococcus sp. WH 7803]
          Length = 795

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+  + A P+ +L +T T  AA EM  R LE++ A
Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LELLLA 76


>gi|119387000|ref|YP_918055.1| UvrD/REP helicase [Paracoccus denitrificans PD1222]
 gi|119377595|gb|ABL72359.1| ATP-dependent DNA helicase, Rep family [Paracoccus denitrificans
          PD1222]
          Length = 799

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R+  LL L  A P  +L +T T  AA EM  R+
Sbjct: 54 AGAGTGKTRALTTRIAHLLNLGLARPGQILAVTFTNKAAREMKDRI 99


>gi|47569949|ref|ZP_00240614.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241]
 gi|228983546|ref|ZP_04143751.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|47553395|gb|EAL11781.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241]
 gi|228776142|gb|EEM24503.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 747

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|319955254|ref|YP_004166521.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319423914|gb|ADV51023.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 794

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+  L+        +L LT T  AA EM  R+  I+
Sbjct: 43 VIAGAGSGKTRVLTYRIAYLMSLGIDSFNILALTFTNKAAREMKARIAAIV 93


>gi|291547104|emb|CBL20212.1| Superfamily I DNA and RNA helicases [Ruminococcus sp. SR1/5]
          Length = 760

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA+EM  RV +I
Sbjct: 44 ILAGAGSGKTRVLTHRIAYLMEEKGVNPWNILAITFTNKAASEMRERVNKI 94


>gi|266623215|ref|ZP_06116150.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
 gi|288865014|gb|EFC97312.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
          Length = 614

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81
          V A  GSGKT  +  R+  L    + +PS +L +T TKAAA EM  R
Sbjct: 24 VLAGPGSGKTFTITHRIKYLTEECSVNPSGILVITFTKAAATEMKER 70


>gi|228469677|ref|ZP_04054645.1| putative ATP-dependent helicase [Porphyromonas uenonis 60-3]
 gi|228308696|gb|EEK17422.1| putative ATP-dependent helicase [Porphyromonas uenonis 60-3]
          Length = 1102

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           A+AG+GKTH + +  LR +L     S   +  +T T  A  E+  R  + ++  +    E
Sbjct: 13  ASAGAGKTHTMTEAFLRHVLQYPESSYQEVQAVTFTNLATRELKERFFKELSTLAVAPQE 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             S           +K   ++AR  L +IL    GL+V+TI +F + I+    +E
Sbjct: 73  --SPFYGTFNKHYSDKQLSTRARTALQSILFDYDGLRVKTIDSFFQDIIHALAIE 125


>gi|222094063|ref|YP_002528120.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|229137129|ref|ZP_04265748.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26]
 gi|221238118|gb|ACM10828.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|228646301|gb|EEL02516.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26]
          Length = 747

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|205372453|ref|ZP_03225266.1| PcrA [Bacillus coahuilensis m4-4]
          Length = 739

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L++     P  +L +T T  AA EM  R+ +I+
Sbjct: 31 AGAGSGKTRVLTHRIAYLMVEKQIAPYNILAITFTNKAAREMKERISKIL 80


>gi|196034734|ref|ZP_03102142.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W]
 gi|218901494|ref|YP_002449328.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820]
 gi|228925549|ref|ZP_04088638.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228944101|ref|ZP_04106480.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|195992777|gb|EDX56737.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W]
 gi|218539393|gb|ACK91791.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820]
 gi|228815490|gb|EEM61732.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228834027|gb|EEM79575.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|49479079|ref|YP_034625.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|225862343|ref|YP_002747721.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102]
 gi|49330635|gb|AAT61281.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|225788890|gb|ACO29107.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102]
          Length = 753

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|78065794|ref|YP_368563.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383]
 gi|77966539|gb|ABB07919.1| Exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383]
          Length = 1236

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +     + +    +    D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFIERLLETTLGEDGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|149366585|ref|ZP_01888619.1| putative helicase IV [Yersinia pestis CA88-4125]
 gi|165924415|ref|ZP_02220247.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165940131|ref|ZP_02228664.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167419681|ref|ZP_02311434.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167467236|ref|ZP_02331940.1| DNA helicase IV [Yersinia pestis FV-1]
 gi|218928586|ref|YP_002346461.1| DNA helicase IV [Yersinia pestis CO92]
 gi|229841415|ref|ZP_04461574.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843525|ref|ZP_04463668.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. India 195]
 gi|115347197|emb|CAL20091.1| putative helicase IV [Yersinia pestis CO92]
 gi|149290959|gb|EDM41034.1| putative helicase IV [Yersinia pestis CA88-4125]
 gi|165911954|gb|EDR30598.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923475|gb|EDR40607.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|166962422|gb|EDR58443.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229689133|gb|EEO81196.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697781|gb|EEO87828.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 661

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           S  V A AGSGKT +LV R   LL  N A P  +L L   + AA EM+ R+
Sbjct: 211 SVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261


>gi|260222507|emb|CBA32139.1| ATP-dependent DNA helicase rep [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 709

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  ++ RL+      + +  +T T  AAAEM  R   +I
Sbjct: 27 VLAGAGSGKTRVITHKIARLIQMGMPANRIAAITFTNKAAAEMRERAKHLI 77


>gi|167634189|ref|ZP_02392511.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442]
 gi|170688392|ref|ZP_02879601.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465]
 gi|254742291|ref|ZP_05199977.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Kruger
          B]
 gi|167530503|gb|EDR93218.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442]
 gi|170667724|gb|EDT18478.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|49183319|ref|YP_026571.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne]
 gi|65317729|ref|ZP_00390688.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis
          str. A2012]
 gi|165871400|ref|ZP_02216048.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488]
 gi|167640142|ref|ZP_02398409.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193]
 gi|170708734|ref|ZP_02899171.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389]
 gi|177653645|ref|ZP_02935784.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174]
 gi|190567423|ref|ZP_03020337.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis
          Tsiankovskii-I]
 gi|227812969|ref|YP_002812978.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684]
 gi|229599888|ref|YP_002864922.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248]
 gi|254756067|ref|ZP_05208096.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Vollum]
 gi|49177246|gb|AAT52622.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne]
 gi|164712884|gb|EDR18413.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488]
 gi|167511953|gb|EDR87332.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193]
 gi|170126313|gb|EDS95203.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389]
 gi|172081225|gb|EDT66300.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174]
 gi|190561550|gb|EDV15521.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis
          Tsiankovskii-I]
 gi|227005824|gb|ACP15567.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684]
 gi|229264296|gb|ACQ45933.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|330860768|emb|CBX71057.1| helicase IV [Yersinia enterocolitica W22703]
          Length = 373

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL  N A P  +L L   + AA EM+ R+
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261


>gi|325279393|ref|YP_004251935.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
 gi|324311202|gb|ADY31755.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
          Length = 1054

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 17/166 (10%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L     R + A+ A    +L +T T  A  EM  R   II     L+D  
Sbjct: 7   ASAGSGKTFALTLEYFRTIFASPAEYKNILAVTFTNKATEEMKSR---IINELHRLADGK 63

Query: 97  LS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            S   E  K +    ++   ++A  L   +L   G L V TI  F + I++ F  E  I 
Sbjct: 64  TSDYGEALKQEFGFTDEQLKNRAVLLRTMLLHDYGRLAVTTIDRFFQRIIKAFTRELGIF 123

Query: 155 SHFAIADE------EQSKKLIEEAK-----KSTLASIMLDNNEELK 189
             + +  +      +   K++++ K     K+ ++ +M  N EE K
Sbjct: 124 PGYNVELDSDFVLLKAVDKVMQQVKDNPGLKNWISELMSSNVEEGK 169


>gi|311696604|gb|ADP99477.1| exodeoxyribonuclease V, beta subunit [marine bacterium HP15]
          Length = 1234

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 21/161 (13%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP----------STLLCLTHTKAAAAEMSHRV 82
           SA + A+AG+GKT  +    +RL+L                 LL +T T+AA  E+  R+
Sbjct: 22  SALIEASAGTGKTFTIAILYVRLVLGQGQSPDSPLQNLLPPNLLVVTFTEAATKELRDRI 81

Query: 83  LEIIT----AWSHLSDE----ILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKV 133
              +T     +S   DE      +A I +++ +  P+ +   + R  L+   E      V
Sbjct: 82  RTRLTQAAEVFSDAPDEPNPPAETALIYQLRDESYPDPASWPECRKKLLLAAEWMDEAAV 141

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            TIH+FC  ++ +   ++   S F +  E    +L++E  +
Sbjct: 142 STIHSFCNRMLSEHAFDSG--SLFKLTLETDQSELLDEVAR 180


>gi|239995612|ref|ZP_04716136.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii ATCC
           27126]
          Length = 1321

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 15/138 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL----EIITAWS 90
           + A+AG+GKT  + +  LRLLL        +L +T TKAA  E+  R+     E +  W 
Sbjct: 44  IEASAGTGKTFNITRLYLRLLLEKKLTVKEILVMTFTKAATEEIKGRIAATLREALLIWQ 103

Query: 91  HLSDEILSAEITKIQGKKP------NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
              D     EI    G  P      N  D+ ++  LL           V TIH FC+ ++
Sbjct: 104 QAKDN--GNEIDS--GCDPVYQYLFNSCDIDESLALLKAAQLELDEASVFTIHGFCQHVI 159

Query: 145 QQFPLEANITSHFAIADE 162
            Q    +       + ++
Sbjct: 160 TQLAFNSGFAMSLNLGND 177


>gi|218557861|ref|YP_002390774.1| DNA helicase IV [Escherichia coli S88]
 gi|218364630|emb|CAR02316.1| DNA helicase IV [Escherichia coli S88]
          Length = 684

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 263


>gi|253698715|ref|YP_003019904.1| UvrD/REP helicase [Geobacter sp. M21]
 gi|251773565|gb|ACT16146.1| UvrD/REP helicase [Geobacter sp. M21]
          Length = 731

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 9/75 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV--------LEII 86
           V A AGSGKT ++V R+  L+     P+  +L +T T  AA EM  R+        L +I
Sbjct: 24  VLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKAAGEMRERLAHMLGDGELPLI 83

Query: 87  TAWSHLSDEILSAEI 101
           + +      IL +EI
Sbjct: 84  STFHSTCARILRSEI 98


>gi|156095560|ref|XP_001613815.1| UvrD/REP helicase [Plasmodium vivax SaI-1]
 gi|148802689|gb|EDL44088.1| UvrD/REP helicase, putative [Plasmodium vivax]
          Length = 1048

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 12/136 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            R+  + A  GSGKT  L  R++R ++      +++C+T T  AA ++  ++ + +    
Sbjct: 34  NRNVCIIACPGSGKTSTLTARIIRSIIEKK--KSVVCITFTNYAANDLKEKITKKVNC-- 89

Query: 91  HLSDEILSAEI-TKIQGKKPN--KSDMSKARHLL--ITILETPGGLKVQTIHAFCEAIMQ 145
            L D  L  ++  K+   K +  K D S   H    + +L T   + + TIH+FC  ++ 
Sbjct: 90  -LIDLYLDTDVRCKLFAGKTSSRKFDTSSKLHSKSKLKVLHTV--MFIGTIHSFCRYLLF 146

Query: 146 QFPLEANITSHFAIAD 161
           ++     I S F  ++
Sbjct: 147 KYKGPFKILSDFICSN 162


>gi|197116476|ref|YP_002136903.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem]
 gi|197085836|gb|ACH37107.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem]
          Length = 732

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 9/75 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV--------LEII 86
           V A AGSGKT ++V R+  L+     P+  +L +T T  AA EM  R+        L +I
Sbjct: 24  VLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKAAGEMRERLAHMLGDGELPLI 83

Query: 87  TAWSHLSDEILSAEI 101
           + +      IL +EI
Sbjct: 84  STFHSTCARILRSEI 98


>gi|83951554|ref|ZP_00960286.1| DNA helicase II, putative [Roseovarius nubinhibens ISM]
 gi|83836560|gb|EAP75857.1| DNA helicase II, putative [Roseovarius nubinhibens ISM]
          Length = 782

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R+  LL   +A P  +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTSRIAHLLSTGSARPDEILAVTFTNKAAREMKDRV 95


>gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95135000|gb|EAT16654.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 676

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE----------I 85
           V A AGSGKT ++  R+   LL       ++ LT T  AA EM  RV+E           
Sbjct: 23  VLAGAGSGKTRVITCRIGH-LLERVPAEQIVALTFTNKAAREMRDRVVEQVGRGKAKGLT 81

Query: 86  ITAWSHLSDEILSAEITKIQGKK 108
           I+ +  L   IL  EI ++  KK
Sbjct: 82  ISTFHSLGVRILRQEIEQLGYKK 104


>gi|312945475|gb|ADR26302.1| DNA helicase IV [Escherichia coli O83:H1 str. NRG 857C]
          Length = 684

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 263


>gi|308183581|ref|YP_003927708.1| DNA helicase II [Helicobacter pylori PeCan4]
 gi|308065766|gb|ADO07658.1| DNA helicase II [Helicobacter pylori PeCan4]
          Length = 681

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|307328515|ref|ZP_07607689.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885783|gb|EFN16795.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 1232

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 33/148 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV            
Sbjct: 46  IVAGAGSGKTTVMAARVVWLVGTGQVAPDRVLGLTFTNKAAGELAERVRR---------- 95

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            +++A I   Q   P  ++            E  G   + T HAF   +++   L   + 
Sbjct: 96  ALVTAGIVD-QDPDPGATE------------EAAGEPVISTYHAFAGQLLKDHGLRVGL- 141

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIML 182
                   E S +L+ +A +  LA+ +L
Sbjct: 142 --------EPSARLLADATRFQLAARVL 161


>gi|317056307|ref|YP_004104774.1| UvrD/REP helicase [Ruminococcus albus 7]
 gi|315448576|gb|ADU22140.1| UvrD/REP helicase [Ruminococcus albus 7]
          Length = 780

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 24/178 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA--------AAEMSHRVLEII 86
           + A AGSGKT +LV R+  ++   +A+ +T    T  +AA          +   R+  +I
Sbjct: 36  ILAGAGSGKTTVLVNRIANMIHFGDAYNTTGQIFTDEEAAFIKDYAEGRTDDGKRLAAVI 95

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQ 145
                    IL+   T       NK+   + +  +  IL   G G+   T H+ C  I++
Sbjct: 96  GVRQVRPWNILAITFT-------NKA-AGELKERIEKILGDEGRGIVAATFHSACVRILR 147

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +       T  FAI D + SK++I+ A +S      LD +E++      + EIS+ +D
Sbjct: 148 RECGNIGFTPSFAIYDTDDSKRVIKAAMRS------LDIDEKMFPVKTVMSEISHAKD 199


>gi|289705135|ref|ZP_06501539.1| UvrD/REP helicase [Micrococcus luteus SK58]
 gi|289558163|gb|EFD51450.1| UvrD/REP helicase [Micrococcus luteus SK58]
          Length = 1176

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
           T+ +  + + P     V A AGSGKT  +  RV+  L+AN    P  +L +T T+ AA E
Sbjct: 37  TQEQAEVVTAPLTPRLVLAGAGSGKTATMADRVV-WLVANGLVRPDEVLGVTFTRKAAGE 95

Query: 78  MSHRV 82
           ++ R+
Sbjct: 96  LAERI 100


>gi|257092005|ref|YP_003165646.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257044529|gb|ACV33717.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1741

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
            Q   + +++++  +  +++A +  + +  V A  GSGKT +LV R+  L+ +   +P  +
Sbjct: 1091 QSWHDIVEVLNNRQQREIVADERESTNVLVLAGPGSGKTRVLVHRIAYLIRVRRENPHGI 1150

Query: 66   LCLTHTKAAAAEMSHRVLEII 86
            L L + + AA ++  R+ E+I
Sbjct: 1151 LALAYNRHAAVQIRQRLGELI 1171


>gi|162138455|ref|YP_540044.2| DNA helicase IV [Escherichia coli UTI89]
 gi|306812591|ref|ZP_07446784.1| DNA helicase IV [Escherichia coli NC101]
 gi|294493600|gb|ADE92356.1| helicase IV [Escherichia coli IHE3034]
 gi|305853354|gb|EFM53793.1| DNA helicase IV [Escherichia coli NC101]
 gi|307627618|gb|ADN71922.1| DNA helicase IV [Escherichia coli UM146]
 gi|323953335|gb|EGB49201.1| UvrD/REP helicase [Escherichia coli H252]
 gi|323958262|gb|EGB53971.1| UvrD/REP helicase [Escherichia coli H263]
          Length = 684

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 263


>gi|30260477|ref|NP_842854.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames]
 gi|47525567|ref|YP_016916.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|254739087|ref|ZP_05196789.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Western
          North America USA6153]
 gi|254761884|ref|ZP_05213733.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str.
          Australia 94]
 gi|30253845|gb|AAP24340.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames]
 gi|47500715|gb|AAT29391.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames
          Ancestor']
          Length = 747

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|303248300|ref|ZP_07334562.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302490325|gb|EFL50237.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 1078

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 15/63 (23%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PST-------------LLCLTHTKAAAAEMSH 80
          V A+AGSGKTH L +R + L L  A   P +             +L +T T  AAAEM  
Sbjct: 5  VKASAGSGKTHALTERFISLALRTARNLPRSCAGSLEAGYALPEILAVTFTNKAAAEMRE 64

Query: 81 RVL 83
          RV 
Sbjct: 65 RVF 67


>gi|294787985|ref|ZP_06753229.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
            muelleri ATCC 29453]
 gi|294484278|gb|EFG31961.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
            muelleri ATCC 29453]
          Length = 1602

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 24   QLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
            Q++  D ++   V A  GSGKT +LV ++  L  L +     LL LT ++AAA E   R+
Sbjct: 1056 QIIQDDNSKHIVVFAAPGSGKTRVLVHKLASLYQLEDVKHEQLLMLTFSRAAAYEFKSRL 1115

Query: 83   LEII 86
             +++
Sbjct: 1116 FKLM 1119


>gi|254686688|ref|ZP_05150546.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str.
          CNEVA-9066]
 gi|254724764|ref|ZP_05186547.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A1055]
          Length = 747

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75


>gi|331657029|ref|ZP_08357991.1| helicase IV (75 kDa helicase) [Escherichia coli TA206]
 gi|222032686|emb|CAP75425.1| Helicase IV [Escherichia coli LF82]
 gi|331055277|gb|EGI27286.1| helicase IV (75 kDa helicase) [Escherichia coli TA206]
          Length = 684

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 263


>gi|324009894|gb|EGB79113.1| UvrD/REP helicase [Escherichia coli MS 57-2]
          Length = 715

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 294


>gi|308070911|ref|YP_003872516.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305860190|gb|ADM71978.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 600

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          S  V A  GSGKT +L  +++RLL      S  L C+T+ +AAA E + R+
Sbjct: 26 STVVIAGPGSGKTTVLTLKIMRLLQEEIPLSRGLACVTYNRAAAKEFNDRL 76


>gi|260914127|ref|ZP_05920600.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC
           43325]
 gi|260631760|gb|EEX49938.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC
           43325]
          Length = 1234

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-----HPST---LLCLTHTKAAAAEMSHRVLEII- 86
           + A+AG+GKT+ +    LRLLL         P T   +L +T T+AA  E+  R+ E I 
Sbjct: 21  IEASAGTGKTYTIGSLYLRLLLQAGVENFPLPLTVEQILVVTFTEAATNELKGRIRERIH 80

Query: 87  ------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                  A+    +  LS E   +Q    +  D+  A   L    ++     + TIH FC
Sbjct: 81  QTKQAFIAYKEQGESALSEE-PFLQELIQHIEDIDIAIQRLKIAEQSMDLAAIYTIHGFC 139

Query: 141 EAIMQQFPLEANITSHFAIADEE 163
             ++ Q+   + +  +  +  +E
Sbjct: 140 RRMLMQYAFNSGVHFNLELVKDE 162


>gi|212696674|ref|ZP_03304802.1| hypothetical protein ANHYDRO_01215 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212676405|gb|EEB36012.1| hypothetical protein ANHYDRO_01215 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 860

 Score = 37.7 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMS 79
          + + L+ +D    A V A  G+GKT  +VQ+++ L+      P+ +L  T TK AA E+ 
Sbjct: 4  EKQNLIVNDSKYPAAVLAGPGTGKTFTIVQKIISLIKNEGLSPNKILVTTFTKKAANELI 63

Query: 80 HRV 82
           RV
Sbjct: 64 ERV 66


>gi|169335318|ref|ZP_02862511.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258056|gb|EDS72022.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM
           17244]
          Length = 741

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 39/134 (29%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT  ++ R+  ++    A P  +L LT T  AA EM  R+  +           
Sbjct: 26  AGAGSGKTRTIIHRIAYIIENGYAKPWEILALTFTNKAAGEMRERIDSMGI--------- 76

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                       P  SD                 + + T H+ C  I++        TS+
Sbjct: 77  ------------PFTSD-----------------IWMGTFHSICARILRIEGHNLGFTSN 107

Query: 157 FAIADEEQSKKLIE 170
           F+I D++ +K++++
Sbjct: 108 FSIYDDDDTKRVVK 121


>gi|15618648|ref|NP_224934.1| exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae CWL029]
 gi|4377044|gb|AAD18877.1| Exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae CWL029]
          Length = 1050

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q VLR L+  +  H    L +T T A+  E+  R+ + +      
Sbjct: 18  FLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLRE 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
              +L+++   +        ++ +    +   L T   + + TIH FC  +++Q+
Sbjct: 78  LKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQY 132


>gi|15836270|ref|NP_300794.1| exodeoxyribonuclease V, beta [Chlamydophila pneumoniae J138]
 gi|33242097|ref|NP_877038.1| exodeoxyribonuclease V 135K chain [Chlamydophila pneumoniae TW-183]
 gi|12644495|sp|Q9Z7G7|EX5B_CHLPN RecName: Full=Exodeoxyribonuclease V beta chain
 gi|8979110|dbj|BAA98945.1| exodeoxyribonuclease V, beta [Chlamydophila pneumoniae J138]
 gi|33236607|gb|AAP98695.1| exodeoxyribonuclease V 135K chain [Chlamydophila pneumoniae TW-183]
          Length = 1050

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q VLR L+  +  H    L +T T A+  E+  R+ + +      
Sbjct: 18  FLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLRE 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
              +L+++   +        ++ +    +   L T   + + TIH FC  +++Q+
Sbjct: 78  LKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQY 132


>gi|322411887|gb|EFY02795.1| DNA helicase II [Streptococcus dysgalactiae subsp. dysgalactiae
          ATCC 27957]
          Length = 772

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78


>gi|315296259|gb|EFU55566.1| UvrD/REP helicase [Escherichia coli MS 16-3]
          Length = 715

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 294


>gi|229159445|ref|ZP_04287463.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803]
 gi|228624016|gb|EEK80824.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803]
          Length = 754

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|296118831|ref|ZP_06837407.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
          20306]
 gi|295968320|gb|EFG81569.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
          20306]
          Length = 692

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          +DL +    +++ A+ P     + A AG+GKT  +  R+  ++      P  +L +T T 
Sbjct: 6  LDLEALDDDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHMVDQGFVSPQRVLAVTFTS 65

Query: 73 AAAAEMSHRVLEI 85
           AA EM  R+L +
Sbjct: 66 KAAGEMRDRLLSM 78


>gi|294629557|ref|ZP_06708117.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292832890|gb|EFF91239.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 634

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 7/53 (13%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRV 82
          V+A AG+GKTH LV+R L  L  +  P      + +L LT ++AAA E+  R+
Sbjct: 29 VTAGAGAGKTHTLVRR-LDALCGHEDPEEALEATDILVLTFSRAAARELRERI 80


>gi|258510684|ref|YP_003184118.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
          subsp. acidocaldarius DSM 446]
 gi|257477410|gb|ACV57729.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
          subsp. acidocaldarius DSM 446]
          Length = 756

 Score = 37.7 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
          S+ +  +++ + E + A+D      V A AGSGKT +L +R+  L+      P  +L +T
Sbjct: 8  SDILKGLNEKQREAVTATDG--PVLVIAGAGSGKTSVLTRRIAYLIAERRVPPWAILAIT 65

Query: 70 HTKAAAAEMSHRVLEII 86
           T  AA EM  R+  ++
Sbjct: 66 FTNKAAREMEERIERLV 82


>gi|117623172|ref|YP_852085.1| DNA helicase IV [Escherichia coli APEC O1]
 gi|237707053|ref|ZP_04537534.1| HelD [Escherichia sp. 3_2_53FAA]
 gi|91071632|gb|ABE06513.1| DNA helicase IV [Escherichia coli UTI89]
 gi|115512296|gb|ABJ00371.1| HelD [Escherichia coli APEC O1]
 gi|226898263|gb|EEH84522.1| HelD [Escherichia sp. 3_2_53FAA]
 gi|315287593|gb|EFU46999.1| UvrD/REP helicase [Escherichia coli MS 110-3]
          Length = 715

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 294


>gi|328955224|ref|YP_004372557.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
 gi|328455548|gb|AEB06742.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
          Length = 1215

 Score = 37.7 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 37/148 (25%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAW 89
           +VSA AGSGKT  L +R+L  L   + P       +L +T T+ AA E+  RV       
Sbjct: 22  FVSAGAGSGKTFTLTRRILWALSERSGPYLDSLDQVLAITFTRDAAQEIRERVR------ 75

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           + L +E +  E   I                            + TIH  C  +++   L
Sbjct: 76  AALIEEGMRTEALAIDDA------------------------WISTIHGMCARMLRAHAL 111

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTL 177
           E  I   F+I   + + +L++ A +  L
Sbjct: 112 ELGIDPEFSIL--QDTDELMDAAVEHVL 137


>gi|317968538|ref|ZP_07969928.1| UvrD/REP helicase [Synechococcus sp. CB0205]
          Length = 792

 Score = 37.7 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  ++  +   P+ LL +T T  AA EM  R LE+         
Sbjct: 24  VVAGAGSGKTRALTHRIAHMIGQHGVDPAELLAVTFTNKAAREMKER-LEL--------- 73

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+ ++ + Q  +P  +  +  +  L + +  E    L + T HA    +++      +
Sbjct: 74  -LLAQKLAQSQFGQPWSTLAAVDQRQLRSRIYREVIKDLWIGTFHALFARLLRFDIDKFR 132

Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171
            P     T  F+I DE  ++ L++E
Sbjct: 133 DPEGLTWTRQFSIYDEGDTQSLVKE 157


>gi|91782971|ref|YP_558177.1| exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans
           LB400]
 gi|91686925|gb|ABE30125.1| Exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans
           LB400]
          Length = 1230

 Score = 37.7 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   + A  H + 
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRSRL-AELHRAI 86

Query: 95  EILSAEITKIQGK------KPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           E+         G+       P +      A  ++   L T     + TIHAFC+  +Q+
Sbjct: 87  EMDDDGGDPFIGRLFETTLAPERGIGRESALKVVRRALRTFDQAAIHTIHAFCQRALQE 145


>gi|71909490|ref|YP_287077.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB]
 gi|71849111|gb|AAZ48607.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB]
          Length = 663

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          V A AGSGKT ++ Q++  L+      P  +  +T T  AA EM  R+ +I++
Sbjct: 21 VLAGAGSGKTRVITQKIAYLVQDCGFQPRNIAAITFTNKAAKEMQERIGKILS 73


>gi|16752303|ref|NP_444560.1| exodeoxyribonuclease V, beta chain, putative [Chlamydophila
           pneumoniae AR39]
 gi|7188945|gb|AAF37903.1| exodeoxyribonuclease V, beta chain, putative [Chlamydophila
           pneumoniae AR39]
          Length = 1050

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q VLR L+  +  H    L +T T A+  E+  R+ + +      
Sbjct: 18  FLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLRE 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
              +L+++   +        ++ +    +   L T   + + TIH FC  +++Q+
Sbjct: 78  LKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQY 132


>gi|297380667|gb|ADI35554.1| DNA helicase II [Helicobacter pylori v225d]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|114778866|ref|ZP_01453665.1| DNA helicase II [Mariprofundus ferrooxydans PV-1]
 gi|114550901|gb|EAU53466.1| DNA helicase II [Mariprofundus ferrooxydans PV-1]
          Length = 699

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  ++ R+  L+ A    P  +L +T T  AAAE+  R+ E+I
Sbjct: 23 AGAGSGKTRTIIHRIGHLISARGVAPHRILAVTFTNKAAAELKSRLSELI 72


>gi|317182683|dbj|BAJ60467.1| DNA helicase II [Helicobacter pylori F57]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|257464157|ref|ZP_05628538.1| DNA helicase II [Fusobacterium sp. D12]
 gi|317061673|ref|ZP_07926158.1| DNA helicase II [Fusobacterium sp. D12]
 gi|313687349|gb|EFS24184.1| DNA helicase II [Fusobacterium sp. D12]
          Length = 901

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          V A  GSGKT  LV+R + LL      PS +L  T T+ AA E+  R+
Sbjct: 19 VIAGPGSGKTKTLVERSIHLLAEKKIEPSQILLSTFTEKAARELRMRI 66


>gi|251782494|ref|YP_002996796.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
          GGS_124]
 gi|242391123|dbj|BAH81582.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
          GGS_124]
 gi|323127381|gb|ADX24678.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
          ATCC 12394]
          Length = 772

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78


>gi|255713190|ref|XP_002552877.1| KLTH0D03498p [Lachancea thermotolerans]
 gi|238934257|emb|CAR22439.1| KLTH0D03498p [Lachancea thermotolerans]
          Length = 1090

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          D T++  V A  G+GKT +L  RV  LLL    +P  ++  T TK A  EM  R+
Sbjct: 19 DHTKALQVVAGPGTGKTKVLTTRVAYLLLEKGINPGDIIITTFTKKATLEMIERL 73


>gi|229845144|ref|ZP_04465279.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 6P18H1]
 gi|229811980|gb|EEP47674.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 6P18H1]
          Length = 1202

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 28/139 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL     +         +L +T T+ A  E+  ++ E IT
Sbjct: 20  IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79

Query: 88  AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134
                 D I  L+A   K Q K   K+           D+ +A H L    +      + 
Sbjct: 80  ------DAINKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIY 132

Query: 135 TIHAFCEAIMQQFPLEANI 153
           TIH FC  ++ Q+   + I
Sbjct: 133 TIHGFCRRMLMQYAFHSGI 151


>gi|225181788|ref|ZP_03735226.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
 gi|225167562|gb|EEG76375.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
          Length = 694

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT ++  R+  L+    A P  +L LT T  AA E+  R+ E++
Sbjct: 5  AGAGSGKTRVITHRIAHLIQQRLAAPWEILALTFTNKAAEELRGRIEELV 54


>gi|194687506|ref|XP_001790073.1| PREDICTED: hypothetical protein [Bos taurus]
          Length = 819

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 14/131 (10%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTL 65
           F +  E+  L  + +   ++  D  R+  V+A AGSGKT  +V +V   LL   + P  +
Sbjct: 198 FFDQVESTPLTDEQRVSSIIFED--RNLLVAA-AGSGKTSTIVGKVGYALLTGLYKPEEI 254

Query: 66  LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAE------ITKIQGKKPNKS-DMS 115
           L L   K A  E+S R+   L+ I +    S E L+        I K  GK P+ S D  
Sbjct: 255 LVLAFNKNAGEELSERISFRLKDILSNFDTSVEALNFHKFGVKVIGKATGKSPSVSNDAG 314

Query: 116 KARHLLITILE 126
           K + LL  I++
Sbjct: 315 KPQALLNRIIQ 325


>gi|219848623|ref|YP_002463056.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
 gi|219542882|gb|ACL24620.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
          Length = 646

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          P     V A AGSGKT +L  R+  L+      PS +L +T T  AA EM  R+
Sbjct: 18 PIGPVLVKAGAGSGKTRVLTLRIAYLITHYGVSPSQILAVTFTNKAAREMRERL 71


>gi|114769364|ref|ZP_01446990.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255]
 gi|114550281|gb|EAU53162.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255]
          Length = 800

 Score = 37.7 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ L+  N A P+ +L +T T  AA EM  RV
Sbjct: 53 AGAGTGKTKALTTRIVHLMNMNQAWPNEILAVTFTNKAAREMKSRV 98


>gi|329116495|ref|ZP_08245212.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD
          2020]
 gi|326906900|gb|EGE53814.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD
          2020]
          Length = 764

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRDRALALNPA 78


>gi|237748331|ref|ZP_04578811.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
 gi|229379693|gb|EEO29784.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
          Length = 1246

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-------LEIIT 87
           + A+AG+GKT  +    LRLLL        +L +T T+AA AE+  R+       L  + 
Sbjct: 20  IEASAGTGKTWNIGGLYLRLLLEKQLEVKQILVVTFTRAATAELRDRIRGRIAKALSYLN 79

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+D+    E+   Q +  N      +R  L    E+     + TIH+FC+  +   
Sbjct: 80  GVDDLADDTFLLELLGRQLETGNTHAELTSR--LQLAFESFDQAAIFTIHSFCQRALATT 137

Query: 148 PLEANITSHFAIADEEQSKKLIEEA 172
              A +   F +  E   ++++ EA
Sbjct: 138 AFSAGVA--FTVRTETVDEEMVLEA 160


>gi|194333976|ref|YP_002015836.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194311794|gb|ACF46189.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 1064

 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 31/139 (22%)

Query: 35  WVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           ++SA AGSGKT  L   +  +LL   A P  +L  T T  AA E+  RV  ++    H  
Sbjct: 8   FISAGAGSGKTTRLTSILYEKLLSGEARPDAILATTFTTKAAGELKDRVRAMLL--HHKR 65

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D++ +A                        I E+    ++ T+++ C  ++++F  E  +
Sbjct: 66  DDLAAA------------------------IAES----RIGTVNSVCGGLLKRFSFELGL 97

Query: 154 TSHFAIADEEQSKKLIEEA 172
           T    I DE+ +   I  A
Sbjct: 98  TVDQRILDEKAALVQISRA 116


>gi|330718929|ref|ZP_08313529.1| ATP-dependent DNA helicase PcrA [Leuconostoc fallax KCTC 3537]
          Length = 745

 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+   N  P  +L +T T  AA EM  R+  ++
Sbjct: 27 IMAGAGSGKTRVLTHRIAHLIEDLNIFPWRILAITFTNKAAKEMKERIARLV 78


>gi|325959374|ref|YP_004290840.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
 gi|325330806|gb|ADZ09868.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
          Length = 933

 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 41/130 (31%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LS 93
           + A  G+GKT +LV+RV  L+      PS +L +T T  AA E+  R+       SH + 
Sbjct: 28  IVAGPGAGKTRVLVERVAYLVKKKKVDPSNILVITFTVKAAEELKARL-------SHCVG 80

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            EI+S +I+                                TIH+FC  I++ +     +
Sbjct: 81  QEIVSMQIS--------------------------------TIHSFCHEILRDYSDYHEL 108

Query: 154 TSHFAIADEE 163
            + F + D E
Sbjct: 109 GATFDVLDSE 118


>gi|317181161|dbj|BAJ58947.1| DNA helicase II [Helicobacter pylori F32]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|210135645|ref|YP_002302084.1| DNA helicase II [Helicobacter pylori P12]
 gi|210133613|gb|ACJ08604.1| DNA helicase II [Helicobacter pylori P12]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
          ++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  
Sbjct: 14 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 73

Query: 81 RVLEIIT 87
          R L+++ 
Sbjct: 74 RALKLLN 80


>gi|167845096|ref|ZP_02470604.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           B7210]
          Length = 652

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|167836128|ref|ZP_02463011.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           MSMB43]
          Length = 529

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGNDGGDPFVARLFETTLAPERGLDPETA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|187479679|ref|YP_787704.1| ATP-dependent DNA helicase [Bordetella avium 197N]
 gi|115424266|emb|CAJ50819.1| ATP-dependent DNA helicase [Bordetella avium 197N]
          Length = 684

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 38/137 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  LL    +    ++ LT T  AA EM+ RV  ++        
Sbjct: 28  VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMTERVKPLV-------- 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                             D   A+           GL + T HA    ++++  + A + 
Sbjct: 80  ------------------DRKLAK-----------GLTISTFHALGVRLLREEAVHAGLK 110

Query: 155 SHFAIADEEQSKKLIEE 171
             F+I D + +  +I++
Sbjct: 111 PQFSILDADDAMAIIQD 127


>gi|254496066|ref|ZP_05108967.1| ATP-dependent DNA helicase Rep [Legionella drancourtii LLAP12]
 gi|254354708|gb|EET13342.1| ATP-dependent DNA helicase Rep [Legionella drancourtii LLAP12]
          Length = 686

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+    + ++ +C +T T  AA EM  RV  ++ A
Sbjct: 38 VLAGAGSGKTRVITQKIGYLINTCGYAASSVCAVTFTNKAANEMRARVAAVLPA 91


>gi|225377484|ref|ZP_03754705.1| hypothetical protein ROSEINA2194_03132 [Roseburia inulinivorans
          DSM 16841]
 gi|225210676|gb|EEG93030.1| hypothetical protein ROSEINA2194_03132 [Roseburia inulinivorans
          DSM 16841]
          Length = 734

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV 82
          D + +  V+AN GSGKT +L+ +V+ L      P   ++ LT T  AA E+  R+
Sbjct: 20 DESSACLVNANVGSGKTTVLITKVMYLHYEKQIPYEQMVVLTFTNKAADEIKERL 74


>gi|217033890|ref|ZP_03439314.1| hypothetical protein HP9810_870g22 [Helicobacter pylori 98-10]
 gi|216943653|gb|EEC23098.1| hypothetical protein HP9810_870g22 [Helicobacter pylori 98-10]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|53805125|ref|YP_113202.1| exodeoxyribonuclease V subunit beta [Methylococcus capsulatus str.
           Bath]
 gi|53758886|gb|AAU93177.1| exodeoxyribonuclease V, beta subunit [Methylococcus capsulatus str.
           Bath]
          Length = 1200

 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL- 92
           + A+AG+GKT  +    LRLLL        +L +T T AA AE+  R+   I+    +L 
Sbjct: 20  IEASAGTGKTWNICGLYLRLLLEQEREVQNILVVTFTNAATAELRERIRSRIVETLVYLR 79

Query: 93  -----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                +D  ++  +  ++G      D +  R  L   L       + TIH FC+  +   
Sbjct: 80  GGGGAADPFVTGLVAALEG----GFDRALLRQRLERALLAFDEAAIFTIHGFCQRALAGT 135

Query: 148 PLEANITSHFAIADEEQSKKLIEE 171
           P  A +   FA+   +    L +E
Sbjct: 136 PFAAGLP--FALELVQDDAMLAQE 157


>gi|256852263|ref|ZP_05557649.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN]
 gi|260661705|ref|ZP_05862616.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN]
 gi|282934843|ref|ZP_06340076.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
 gi|297205570|ref|ZP_06922966.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16]
 gi|256615309|gb|EEU20500.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN]
 gi|260547452|gb|EEX23431.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN]
 gi|281301074|gb|EFA93385.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
 gi|297150148|gb|EFH30445.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16]
          Length = 754

 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 43/142 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++        
Sbjct: 27  VVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEMKERVQKLL-------- 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV--QTIHAFCEAIMQQFPLEAN 152
                                            P G  V   T HA C  I+++   +  
Sbjct: 79  --------------------------------GPAGQDVWMSTFHALCVRILRRDADKIG 106

Query: 153 ITSHFAIADEEQSKKLIEEAKK 174
            + +F+IAD  +   LI+  +K
Sbjct: 107 YSRNFSIADSSEQVTLIKHIEK 128


>gi|167918353|ref|ZP_02505444.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           BCC215]
          Length = 667

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|164687737|ref|ZP_02211765.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM
          16795]
 gi|164603511|gb|EDQ96976.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM
          16795]
          Length = 746

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
          ETI++++  + E +  ++      + A AGSGKT +L  R+  L+         +L +T 
Sbjct: 4  ETIEMLNPAQREAVEQTEG--PILILAGAGSGKTRVLTTRIGYLMKEKKVKAENILAITF 61

Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSA 99
          T  AA EM  RV E       L+DE  SA
Sbjct: 62 TNKAANEMRERVDET------LNDEDTSA 84


>gi|71065902|ref|YP_264629.1| rep helicase, single-stranded DNA-dependent ATPase protein
           [Psychrobacter arcticus 273-4]
 gi|71038887|gb|AAZ19195.1| probable rep helicase, single-stranded DNA-dependent ATPase protein
           [Psychrobacter arcticus 273-4]
          Length = 154

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 22  SEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + QLLA+        V A AGSGKT  L  R   L+     P  +L LT T+ AA E+  
Sbjct: 67  ANQLLAATTIEGKVLVIAGAGSGKTKTLTYRTSYLIENGVSPKEILLLTFTRKAANEIKS 126

Query: 81  R---VLEIITAWSHLSDEIL 97
           R   +L  I +++   DE L
Sbjct: 127 RAKKLLASIPSFTQRLDEDL 146


>gi|317010148|gb|ADU80728.1| DNA helicase II (uvrD) [Helicobacter pylori India7]
          Length = 682

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
          ++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  
Sbjct: 15 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 74

Query: 81 RVLEII 86
          R L+++
Sbjct: 75 RALKLL 80


>gi|256821245|ref|YP_003145208.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069]
 gi|256794784|gb|ACV25440.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069]
          Length = 674

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 40/156 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75
           +++ + E LLA+       V A AGSGKT ++ ++++ L+     P+  ++ +T T  AA
Sbjct: 6   LNEKQREALLATQG--PILVLAGAGSGKTSVITRKMVYLIKEKDIPARNIVAVTFTNKAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV                   +K+ G K  +                  GL V T
Sbjct: 64  REMKQRV-------------------SKLAGAKATQ------------------GLTVST 86

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            H F    +++   +  + S+F I D++ S  LI++
Sbjct: 87  FHNFGLNFIRREYKKLRMKSNFTIFDDQDSLALIKD 122


>gi|99034367|ref|ZP_01314391.1| hypothetical protein Wendoof_01000810 [Wolbachia endosymbiont of
          Drosophila willistoni TSC#14030-0811.24]
          Length = 149

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          D +S    EQ  A ++  R   + A AG+GKT  +  R+  ++   +A+   +L +T T 
Sbjct: 3  DYLSLLNPEQQSAVTNIDRPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAVTFTN 62

Query: 73 AAAAEMSHRVLEI 85
           AA EM  RVLE+
Sbjct: 63 KAANEMVSRVLEL 75


>gi|15675225|ref|NP_269399.1| DNA helicase II [Streptococcus pyogenes M1 GAS]
 gi|21910437|ref|NP_664705.1| DNA helicase II [Streptococcus pyogenes MGAS315]
 gi|28896013|ref|NP_802363.1| DNA helicase II [Streptococcus pyogenes SSI-1]
 gi|71910790|ref|YP_282340.1| DNA helicase II [Streptococcus pyogenes MGAS5005]
 gi|94988710|ref|YP_596811.1| DNA helicase II [Streptococcus pyogenes MGAS9429]
 gi|94992533|ref|YP_600632.1| DNA helicase II [Streptococcus pyogenes MGAS2096]
 gi|13622394|gb|AAK34120.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1
          GAS]
 gi|21904635|gb|AAM79508.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
          MGAS315]
 gi|28811263|dbj|BAC64196.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
          SSI-1]
 gi|71853572|gb|AAZ51595.1| DNA helicase II [Streptococcus pyogenes MGAS5005]
 gi|94542218|gb|ABF32267.1| DNA helicase II [Streptococcus pyogenes MGAS9429]
 gi|94546041|gb|ABF36088.1| DNA helicase II [Streptococcus pyogenes MGAS2096]
          Length = 772

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78


>gi|317013248|gb|ADU83856.1| DNA helicase II (uvrD) [Helicobacter pylori Lithuania75]
          Length = 682

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
          ++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  
Sbjct: 15 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 74

Query: 81 RVLEII 86
          R L+++
Sbjct: 75 RALKLL 80


>gi|307638133|gb|ADN80583.1| ATP-dependent DNA helicase [Helicobacter pylori 908]
 gi|325996733|gb|ADZ52138.1| ATP-dependent DNA helicase /epsilon proteobacterial type 2
          [Helicobacter pylori 2018]
 gi|325998327|gb|ADZ50535.1| putative ATP-dependent DNA helicase [Helicobacter pylori 2017]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
          ++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  
Sbjct: 14 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 73

Query: 81 RVLEIIT 87
          R L+++ 
Sbjct: 74 RALKLLN 80


>gi|167902086|ref|ZP_02489291.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           NCTC 13177]
          Length = 661

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|167562258|ref|ZP_02355174.1| exodeoxyribonuclease V, beta subunit [Burkholderia oklahomensis
           EO147]
          Length = 537

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    ++  +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGNDPFVARLFETTLSPERGIDPETA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|50914312|ref|YP_060284.1| DNA helicase II [Streptococcus pyogenes MGAS10394]
 gi|94990600|ref|YP_598700.1| DNA helicase II [Streptococcus pyogenes MGAS10270]
 gi|50903386|gb|AAT87101.1| DNA helicase II [Streptococcus pyogenes MGAS10394]
 gi|94544108|gb|ABF34156.1| DNA helicase II [Streptococcus pyogenes MGAS10270]
          Length = 772

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78


>gi|126660529|ref|ZP_01731635.1| ABC1-like protein [Cyanothece sp. CCY0110]
 gi|126618172|gb|EAZ88935.1| ABC1-like protein [Cyanothece sp. CCY0110]
          Length = 572

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL---LITILETPGGLKVQTIHAFCEA 142
           +  WS+ SD +L+ E   IQG K   +D  +A  L    I  +    GL+    H F  A
Sbjct: 246 VIYWSYSSDRVLTLEW--IQGYKLTDTDKIRAAGLDPYAIVKIGVTSGLRQLLEHGFFHA 303

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEILEIS 199
                 L A +    A  D     +L EE K++  +S++   NE+   L + F ++  ++
Sbjct: 304 DPHPGNLFATLDGRMAFIDFGMMDQLEEETKETIASSVVQLINEDYNALARDFVQLGFLT 363

Query: 200 NDEDIETLIS 209
            D DI  +I 
Sbjct: 364 PDTDIRPIIP 373


>gi|251771257|gb|EES51838.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum]
          Length = 647

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 26/53 (49%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          P   A V A AGSGKT +L  R   LL        +L LT TK A+  M  R+
Sbjct: 20 PDGPALVLAGAGSGKTRVLTYRAAHLLSRGVPAPRILLLTFTKKASRVMQERL 72


>gi|209559530|ref|YP_002286002.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes
          NZ131]
 gi|209540731|gb|ACI61307.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes
          NZ131]
          Length = 772

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78


>gi|187735472|ref|YP_001877584.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425524|gb|ACD04803.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 668

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AG+GKT  +  R+  ++     P ++L +T T  AA EM  RV +++
Sbjct: 29 AGAGTGKTRTVTCRIAHMVDRGISPKSILAVTFTNKAALEMRERVGQMV 77


>gi|121607593|ref|YP_995400.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121552233|gb|ABM56382.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 697

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  ++  ++     P  +  +T T  AAAEM  R   +I
Sbjct: 22 VLAGAGSGKTRVITHKIAHMIERGLEPGRIAAITFTNKAAAEMRERARGLI 72


>gi|326383314|ref|ZP_08205002.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198064|gb|EGD55250.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 679

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 9  EH-SETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
          EH +  + + S    EQL A   P     V A AG+GKT  + +R+  L+     +P  +
Sbjct: 5  EHQAREVGVTSGLDPEQLEAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVDSGQVNPEQV 64

Query: 66 LCLTHTKAAAAEMSHRV 82
          L +T T  AAAEM  R+
Sbjct: 65 LAVTFTARAAAEMRERL 81


>gi|269302528|gb|ACZ32628.1| exodeoxyribonuclease V, beta subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 1050

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++ A+AG+GKT  + Q VLR L+  +  H    L +T T A+  E+  R+ + +      
Sbjct: 18  FLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLRE 77

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
              +L+++   +        ++ +    +   L T   + + TIH FC  +++Q+
Sbjct: 78  LKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQY 132


>gi|167815128|ref|ZP_02446808.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei 91]
          Length = 626

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|78049804|ref|YP_365979.1| DNA-dependent helicase II [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|325926001|ref|ZP_08187367.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
 gi|78038234|emb|CAJ25979.1| DNA helicase II [Xanthomonas campestris pv. vesicatoria str.
          85-10]
 gi|325543597|gb|EGD15014.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81
          S P     V A AGSGKT +L+ R+  L      P+  +  +T T  AA EM HR
Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68


>gi|308062742|gb|ADO04630.1| DNA helicase II [Helicobacter pylori Cuz20]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|325673659|ref|ZP_08153350.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707]
 gi|325555680|gb|EGD25351.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707]
          Length = 1106

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 14/154 (9%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL 83
           L A  P  +  + A+AG+GKT+ +V    R +       S LL +T ++AA  E+  R  
Sbjct: 14  LFAPLPQGTTVLEASAGTGKTYAIVGLAARFVAEEGIDLSQLLLVTFSRAATKELRERTR 73

Query: 84  EIITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           E   + +    +  +A ++K          + +++++ R  L+  L       + T H+F
Sbjct: 74  ERFASAAAGLADPAAARVSKDPLVAHLADTDDAEIARRRRRLMQALSDFDAGTIVTTHSF 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           C+ ++    +           D +    L+EEA+
Sbjct: 134 CQRMLDGLGIA---------GDRDPDAVLVEEAE 158


>gi|259416911|ref|ZP_05740831.1| DNA helicase II [Silicibacter sp. TrichCH4B]
 gi|259348350|gb|EEW60127.1| DNA helicase II [Silicibacter sp. TrichCH4B]
          Length = 811

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL  N A  + +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTTRIVHLLTTNRARTNEILAVTFTNKAAREMKERV 95


>gi|188528249|ref|YP_001910936.1| DNA helicase II [Helicobacter pylori Shi470]
 gi|188144489|gb|ACD48906.1| DNA helicase II [Helicobacter pylori Shi470]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|239917997|ref|YP_002957555.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|281415827|ref|ZP_06247569.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|239839204|gb|ACS31001.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
          Length = 1176

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
           T+ +  + + P     V A AGSGKT  +  RV+  L+AN    P  +L +T T+ AA E
Sbjct: 37  TEEQAEVVTAPLTPRLVLAGAGSGKTATMADRVV-WLVANGLVRPDEVLGVTFTRKAAGE 95

Query: 78  MSHRV 82
           ++ R+
Sbjct: 96  LAERI 100


>gi|49188460|gb|AAT57902.1| 1-aminocyclopropane-1-carboxylate synthase [Saccharum officinarum]
          Length = 242

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 35/208 (16%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP 62
              E+  + DL+     E  L   P  + W  A AGSG        + RV  +LL N  P
Sbjct: 2   GLAENQVSFDLL-----EGYLRDHPEAADWGGA-AGSGVASFRDNALMRVRAVLLTN--P 53

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWS-HL-SDEILS------------AEITKIQGKK 108
           S  L  T  ++   +    VL+ +   + HL SDEI S            AE+ + + ++
Sbjct: 54  SNPLGTTVKRSVLED----VLDFVVRHNIHLISDEIYSGSVFAAPDLVSVAELVESRARR 109

Query: 109 PNKSDMSKARHLLITILETPG--GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
            + S +++  H++ ++ + PG  G +V  ++++ +A++      A   S F +   +  K
Sbjct: 110 GDDSGVAERVHIVYSLSKDPGLPGFRVGVVYSYNDAVVTT----ARRMSSFTLVSSQTQK 165

Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYE 194
            L+     +  A   +  N E  +A ++
Sbjct: 166 TLVAMLSDADFADAYIRTNRERLRARHD 193


>gi|73666864|ref|YP_302880.1| ATP-dependent DNA helicase Rep [Ehrlichia canis str. Jake]
 gi|72394005|gb|AAZ68282.1| ATP-dependent DNA helicase, Rep family [Ehrlichia canis str.
          Jake]
          Length = 639

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AG+GKT  +  R+  ++  N A P+ +L +T T  AA EM  R+ E+  A++
Sbjct: 27 AGAGTGKTRTVTSRIAYIINNNFALPNQILAVTFTNKAANEMLARINEMTPAYN 80


>gi|329938004|ref|ZP_08287486.1| putative DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329302961|gb|EGG46850.1| putative DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 631

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 7/53 (13%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRV 82
          V+A AG+GKTH LV+R L  L  +  P      + +L LT ++AAA E+  R+
Sbjct: 29 VTAGAGAGKTHTLVRR-LDALCGHEDPEEALDAADILVLTFSRAAARELRERI 80


>gi|315638948|ref|ZP_07894119.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter upsaliensis JV21]
 gi|315480977|gb|EFU71610.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter upsaliensis JV21]
          Length = 675

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQL A+        + A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNEEQLKAAKANFGHNLIIASAGTGKTSTIVARIAFLLQQGISPERIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMIARL 69


>gi|307721687|ref|YP_003892827.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
 gi|306979780|gb|ADN09815.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
          Length = 682

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  +V R+  L+     P S  L LT T  AA EM  R L +I
Sbjct: 27 AGAGSGKTTTIVSRLAYLIEGVGIPASNTLTLTFTNKAAKEMKERSLSMI 76


>gi|291460344|ref|ZP_06599734.1| exonuclease RexA [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417099|gb|EFE90818.1| exonuclease RexA [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 433

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 21/110 (19%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A  G GKT +L +R+L  + A    S+ L L  T+ A  E   ++ +      HL  E  
Sbjct: 28  AGPGIGKTTLLSRRILSQIKAGEKLSSFLLLAFTREAVREFRRKIRK------HLYRE-- 79

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                 + G+    + + K+R  L  I       ++QTI++FC  +++ +
Sbjct: 80  ------LNGESRGNALLQKSRQKLSEI-------RIQTIYSFCRWVLETY 116


>gi|269101917|ref|ZP_06154614.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161815|gb|EEZ40311.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 1221

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 26/147 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-------HPST---LLCLTHTKAAAAEMSHRVL-- 83
           + A+AG+GKT  +    LRLLL +        +P T   +L +T T+AA AE+  R+   
Sbjct: 28  IEASAGTGKTFTIASLYLRLLLGHGDEQSRFPYPLTVDQILVVTFTEAATAELRDRIRRR 87

Query: 84  ----EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                I  A  + SD +++  +  I   K   + + +A   +           + TIH F
Sbjct: 88  IHDARIAFARGNSSDPVIAPLLEDIADHKAAAATLLQAERQMDEA-------AIYTIHGF 140

Query: 140 CEAIMQQFPLEAN--ITSHFAIADEEQ 164
           C+ ++ Q   E+    T+ F + +E Q
Sbjct: 141 CQRMLTQNAFESGSLFTNEF-VTEESQ 166


>gi|254779988|ref|YP_003058095.1| DNA helicase II (UvrD) [Helicobacter pylori B38]
 gi|254001901|emb|CAX30154.1| DNA helicase II (UvrD) [Helicobacter pylori B38]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
          ++++ AS       + A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  
Sbjct: 14 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 73

Query: 81 RVLEII 86
          R L+++
Sbjct: 74 RALKLL 79


>gi|163839985|ref|YP_001624390.1| superfamily I DNA/RNA helicase [Renibacterium salmoninarum ATCC
          33209]
 gi|162953461|gb|ABY22976.1| superfamily I DNA and RNA helicase [Renibacterium salmoninarum
          ATCC 33209]
          Length = 714

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 23 EQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSH 80
          EQLL A+  +    V A AG+GKT  +  R+   +L  ++ P  LL +T T  AAAEM  
Sbjct: 16 EQLLVATTLSGPVCVLAGAGTGKTRAITHRIAYGVLGGSYNPQRLLAVTFTARAAAEMRT 75

Query: 81 RVLEI 85
          R+ ++
Sbjct: 76 RLRDL 80


>gi|289666094|ref|ZP_06487675.1| DNA-dependent helicase II [Xanthomonas campestris pv. vasculorum
          NCPPB702]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81
          S P     V A AGSGKT +L+ R+  L      P+  +  +T T  AA EM HR
Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68


>gi|110679728|ref|YP_682735.1| helicase IV [Roseobacter denitrificans OCh 114]
 gi|109455844|gb|ABG32049.1| helicase IV [Roseobacter denitrificans OCh 114]
          Length = 916

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 26/199 (13%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PS 63
           + + E  +T++ +  T  ++L       +  V A AGSGKT ++  +   L+ A    P 
Sbjct: 132 DRWTEFLDTVESMPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRSPE 191

Query: 64  TLLCLTHTKAAAAEMSHRV-----LEIITAWSH-LSDEILSAEITKIQGKKP-------- 109
            LL L   + AA EMS R+     + I     H L+ EI    I  ++G+KP        
Sbjct: 192 ELLLLAFARDAATEMSERIEARCGVPIAARTFHALAYEI----IGDVEGEKPALAPTATD 247

Query: 110 NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +K+ +S  R +L  I+     +  +T+  +       FP   +  S      E +S+ L 
Sbjct: 248 DKAFLSLIRDILRYIVSRVSDV-AETVIGWFAGFFDDFPSPWDFKSAHEWYSEVESRNL- 305

Query: 170 EEAKKSTLASIMLDNNEEL 188
                 TL    +++ EEL
Sbjct: 306 -----RTLQGETVNSFEEL 319


>gi|328947216|ref|YP_004364553.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328447540|gb|AEB13256.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 736

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AGSGKT ++  ++  ++     +P+++L +T TK AA EM  R + +
Sbjct: 29 AGAGSGKTRVITTKIAYMISELGINPASILAVTFTKKAAEEMKERAINL 77


>gi|222153135|ref|YP_002562312.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
 gi|222113948|emb|CAR42197.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 755

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL 83
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKCVNPWNILAITFTNKAAREMRERAL 73


>gi|50365383|ref|YP_053808.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum
          L1]
 gi|50363939|gb|AAT75924.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum
          L1]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT ++  ++  L+      P  +L +T T  AA EM  RV +II
Sbjct: 25 IVAGAGSGKTKVITTKIAYLIEELKMAPYKILAVTFTNKAAREMRDRVTKII 76


>gi|19746195|ref|NP_607331.1| DNA helicase II [Streptococcus pyogenes MGAS8232]
 gi|19748377|gb|AAL97830.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
          MGAS8232]
          Length = 772

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78


>gi|326383310|ref|ZP_08204998.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198060|gb|EGD55246.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1117

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 17 ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKA 73
          + Q   EQ+ +   P     V A AG+GKT  +  RV+  L+AN    P  +L LT T+ 
Sbjct: 18 LPQPTPEQIEVIEAPMEPMLVVAGAGAGKTETMASRVV-WLVANRLVGPEEILGLTFTRK 76

Query: 74 AAAEMSHRV 82
          AA+E++ R+
Sbjct: 77 AASELAARI 85


>gi|325916758|ref|ZP_08179012.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
          35937]
 gi|325537012|gb|EGD08754.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
          35937]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81
          S P     V A AGSGKT +L+ R+  L      P+  +  +T T  AA EM HR
Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68


>gi|59711189|ref|YP_203965.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri
           ES114]
 gi|59479290|gb|AAW85077.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri
           ES114]
          Length = 1208

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 27/138 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA AE+  R+   
Sbjct: 23  IEASAGTGKTFTIASLYLRLLLGHGDEGTRHQEELTVDRILVVTFTEAATAELRERIR-- 80

Query: 86  ITAWSHLSDEILS-AEITKIQGKKPNK----------SDMSKARHLLITILETPGGLKVQ 134
               + + D  L+ A      G K              D   A  +L+    +     + 
Sbjct: 81  ----AKIHDARLAFARAVHNNGYKSGDPVIDPLLASIGDHKSAAQILLNAERSMDEASIF 136

Query: 135 TIHAFCEAIMQQFPLEAN 152
           TIH FC+ ++ Q   E+ 
Sbjct: 137 TIHGFCQRMLTQNAFESG 154


>gi|325923795|ref|ZP_08185410.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
 gi|325545728|gb|EGD16967.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81
          S P     V A AGSGKT +L+ R+  L      P+  +  +T T  AA EM HR
Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68


>gi|329939647|ref|ZP_08288948.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301217|gb|EGG45112.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 1244

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 35/154 (22%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV +    
Sbjct: 30  PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRK---- 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                  ++ A +T      P+                 PG   + T HAF   ++    
Sbjct: 86  ------ALVRAGVTDPDAIDPDNP---------------PGEPLISTYHAFAGRLLTDHG 124

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           L   +         E + +L+ +A +  LA+ +L
Sbjct: 125 LRIGL---------EPTSRLLADATRYQLAARVL 149


>gi|295697356|ref|YP_003590594.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912]
 gi|295412958|gb|ADG07450.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912]
          Length = 755

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 11/77 (14%)

Query: 21 KSEQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
          ++E LLA  +D  R A         + A AGSGKT +L  RV  L+    A P  +L +T
Sbjct: 10 RAEALLAGLNDAQREAVRQTEGPLLILAGAGSGKTRVLTHRVAYLVATRKAPPWGILAIT 69

Query: 70 HTKAAAAEMSHRVLEII 86
           T  AA EM  R+  ++
Sbjct: 70 FTNKAAREMRERIGRLV 86


>gi|238754346|ref|ZP_04615702.1| Helicase IV (75 kDa helicase) [Yersinia ruckeri ATCC 29473]
 gi|238707379|gb|EEP99740.1| Helicase IV (75 kDa helicase) [Yersinia ruckeri ATCC 29473]
          Length = 686

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM+ R+
Sbjct: 216 VLAGAGSGKTSVLVARAGWLLRRQEAQPDQILLLAFGRQAADEMNARI 263


>gi|172040184|ref|YP_001799898.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851488|emb|CAQ04464.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 1219

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78
           +   ++++ P  S  V A AG+GKT  +  RV+  L+AN +  P  +L LT T+ AA E+
Sbjct: 56  QQSAVISAPPQGSYIVVAGAGAGKTETMAARVV-WLVANGYVLPEHVLGLTFTRKAANEL 114

Query: 79  SHRV 82
             R+
Sbjct: 115 GQRI 118


>gi|167569499|ref|ZP_02362373.1| exodeoxyribonuclease V, beta subunit [Burkholderia oklahomensis
           C6786]
          Length = 554

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    ++  +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGGDGNDPFVARLFETTLSPERGIDPETA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|188993614|ref|YP_001905624.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
          str. B100]
 gi|167735374|emb|CAP53588.1| DNA helicase II [Xanthomonas campestris pv. campestris]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81
          S P     V A AGSGKT +L+ R+  L      P+  +  +T T  AA EM HR
Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68


>gi|291277042|ref|YP_003516814.1| putative ATP-dependent DNA helicase [Helicobacter mustelae 12198]
 gi|290964236|emb|CBG40085.1| putative ATP-dependent DNA helicase [Helicobacter mustelae 12198]
          Length = 674

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S    EQ LA+        + A+AG+GKT  +V R+  L      P ++L LT T  AA
Sbjct: 3  LSNLNDEQRLAATAKMGHNLIIASAGTGKTSTIVGRIAHLFDNQILPESILLLTFTNKAA 62

Query: 76 AEMSHRV 82
           EM  RV
Sbjct: 63 EEMIARV 69


>gi|254672842|emb|CBA07038.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           alpha275]
          Length = 1204

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             ++R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKESRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|19552002|ref|NP_600004.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389665|ref|YP_225067.1| DNA helicase II protein [Corynebacterium glutamicum ATCC 13032]
 gi|41325000|emb|CAF19481.1| PROBABLE DNA HELICASE II PROTEIN [Corynebacterium glutamicum ATCC
           13032]
          Length = 1070

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTL 65
           QEH+ T       +   ++ S+P     V A AG+GKT  +  RV+  L+AN    P  +
Sbjct: 15  QEHAPT------DQQSAIIGSEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFVAPDQV 66

Query: 66  LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112
           L LT T+ AA ++S R+   LE +     L D   + ++ K +Q   P  S
Sbjct: 67  LGLTFTRKAAQQLSQRIRKRLETLAGVPRLKDIDPTGQLEKNLQAITPTVS 117


>gi|322807582|emb|CBZ05157.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum
          H04402 065]
          Length = 738

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++   + +PS +L +T T  AA EM  R+  ++
Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLDIYPSKILAITFTNKAAGEMKERIKALV 75


>gi|318042807|ref|ZP_07974763.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CB0101]
          Length = 802

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  +   P+ LL +T T  AA EM  R LE+         
Sbjct: 26  VVAGAGSGKTRALTHRIAHLIGQHGVDPAELLAVTFTNKAAREMKER-LEL--------- 75

Query: 95  EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+ ++ + Q  +P +     + R L   I  +    L + T HA    +++      +
Sbjct: 76  -LLAQKLAQSQFGQPWSTLPAVEQRQLRSRIYRDVIKDLWIGTFHALFARLLRFDIDKFR 134

Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171
            P     T  F+I DE  ++ L++E
Sbjct: 135 DPEGLTWTRQFSIYDEGDTQSLVKE 159


>gi|302339977|ref|YP_003805183.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637162|gb|ADK82589.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 1082

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 34/143 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A  G+GKT  L+++V RL+     PS+++ +T    AA E              ++D 
Sbjct: 509 IIAGPGTGKTRTLIEKVTRLIHGGVVPSSIVAVTFANKAAGE--------------VADR 554

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           + SA IT         S +S+A            G++V T H+   AI++          
Sbjct: 555 LRSAGITV-------NSSLSEA-----------DGVRVFTFHSLGLAIVKPHLALLEREG 596

Query: 156 HFAIADEEQSKKLIEEAKKSTLA 178
            F I D+E+   L++   KS L+
Sbjct: 597 DFLIIDDEEKMALLKS--KSDLS 617


>gi|255020927|ref|ZP_05292983.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC
           51756]
 gi|254969718|gb|EET27224.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC
           51756]
          Length = 663

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE---------- 84
           V A AGSGKT ++ ++++ L+  +   P  +  +T T  AA EM  RV +          
Sbjct: 25  VLAGAGSGKTRVITRKIVHLIQDHGVEPRHIAAVTFTNKAAREMKGRVQQSLEGRSARGL 84

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKS 112
            I+ +  L  EIL  +IT++ G + N S
Sbjct: 85  TISTFHRLGLEILRQDITQL-GYRENFS 111


>gi|317014893|gb|ADU82329.1| putative ATP-dependent DNA helicase [Helicobacter pylori
          Gambia94/24]
          Length = 681

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87
          A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  R L+++ 
Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLLN 80


>gi|45657496|ref|YP_001582.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|45600735|gb|AAS70219.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 732

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          DL  + K   L  + P     + A AGSGKT ++  R+  LL+ N     +  +T T  A
Sbjct: 8  DLNEEQKKAVLQVNGPV---LILAGAGSGKTRVITHRIANLLI-NHGIDRICAVTFTNKA 63

Query: 75 AAEMSHRVLEII 86
          AAEM  RV +I+
Sbjct: 64 AAEMVERVKKIV 75


>gi|330431882|gb|AEC16941.1| ATP-dependent DNA helicase Rep [Gallibacterium anatis UMN179]
          Length = 670

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+   N  P+ +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVIINKIAYLIEHCNYSPNKIAAVTFTNKAAREMKERV 67


>gi|241767147|ref|ZP_04764910.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241362257|gb|EER58285.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 778

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 24  QLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           QL A   T+ A  V A AGSGKT ++  ++  ++     P  +  +T T  AAAEM  R 
Sbjct: 96  QLQAVHYTQGACLVLAGAGSGKTRVITHKIAHMIEQGLEPRRIAAITFTNKAAAEMRERA 155

Query: 83  LEII 86
             +I
Sbjct: 156 KGLI 159


>gi|225574543|ref|ZP_03783153.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038230|gb|EEG48476.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM
          10507]
          Length = 737

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  ++ +T T  AA EM  RV +I+
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAQEMKERVDQIV 75


>gi|182419338|ref|ZP_02950590.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521]
 gi|182376669|gb|EDT74241.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521]
          Length = 757

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++   N  P  +L +T T  AA EM  RV  +I        
Sbjct: 25  ILAGAGSGKTRVLTHRIAHMVEDLNIAPYNILAITFTNKAAKEMKDRVRALIG------- 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E    + + T H+ C  I+++   +    
Sbjct: 78  -------------------------------ECAENMWISTFHSTCVKILRREIDKIGYK 106

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S F I D    K L++E  K+
Sbjct: 107 SSFTIYDSSDQKTLVKECMKT 127


>gi|145294939|ref|YP_001137760.1| hypothetical protein cgR_0885 [Corynebacterium glutamicum R]
 gi|140844859|dbj|BAF53858.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1070

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTL 65
           QEH+ T       +   ++ S+P     V A AG+GKT  +  RV+  L+AN    P  +
Sbjct: 15  QEHAPT------DQQSAIIGSEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFVAPDQV 66

Query: 66  LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112
           L LT T+ AA ++S R+   LE +     L D   + ++ K +Q   P  S
Sbjct: 67  LGLTFTRKAAQQLSQRIRKRLETLAGVPRLKDIDPTGQLEKNLQAITPTVS 117


>gi|126725750|ref|ZP_01741592.1| helicase IV [Rhodobacterales bacterium HTCC2150]
 gi|126704954|gb|EBA04045.1| helicase IV [Rhodobacterales bacterium HTCC2150]
          Length = 984

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTL 65
           F++  +TI+    T  ++L       +  V A AGSGKT ++V +   L+ +    P  +
Sbjct: 194 FKDFFDTIESNPLTPEQRLAVIADEDATIVLAGAGSGKTSVIVAKAAYLIKSGIRQPDKI 253

Query: 66  LCLTHTKAAAAEMSHRVLE 84
           L +   K AAAEM+ R+ E
Sbjct: 254 LLMAFGKDAAAEMATRIEE 272


>gi|126726603|ref|ZP_01742443.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150]
 gi|126703932|gb|EBA03025.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150]
          Length = 797

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           A AG+GKT  L  R+  LL    A P+ +L +T T  AA EM  RV
Sbjct: 61  AGAGTGKTKALTTRIAHLLATGAARPNEILAVTFTNKAAREMKDRV 106


>gi|145225238|ref|YP_001135916.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217724|gb|ABP47128.1| ATP-dependent DNA helicase, Rep family [Mycobacterium gilvum
          PYR-GCK]
          Length = 707

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
          + E +LA  P     V A AG+GKT  + +R+  L+ A    P  +L +T T+ AA EM 
Sbjct: 22 QREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFTQRAAGEMR 79

Query: 80 HRV 82
           R+
Sbjct: 80 GRL 82


>gi|315445535|ref|YP_004078414.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263838|gb|ADU00580.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 707

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
          + E +LA  P     V A AG+GKT  + +R+  L+ A    P  +L +T T+ AA EM 
Sbjct: 22 QREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFTQRAAGEMR 79

Query: 80 HRV 82
           R+
Sbjct: 80 GRL 82


>gi|313667279|ref|YP_004049680.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
 gi|313153910|gb|ADR37760.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 889

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 19/139 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AG+GKT  L QR L  L  +  P  +  +T T  AAAE+  R+ E +   S     
Sbjct: 4   IVASAGTGKTTRLTQRYLEHLEQHP-PQRVAAVTFTNKAAAELRERIFEALGRGSFYD-- 60

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                        P+ +   +     + +LE P G    TIH+F   +++       +  
Sbjct: 61  -----------FTPSPALAERLADYQVRVLEAPIG----TIHSFFGYLLRLTAPMLGLDP 105

Query: 156 HFAIADEEQSKK-LIEEAK 173
           HF + D   ++   +EE +
Sbjct: 106 HFEVIDPATARAWFLEEVR 124


>gi|21323542|dbj|BAB98169.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 1073

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTL 65
           QEH+ T       +   ++ S+P     V A AG+GKT  +  RV+  L+AN    P  +
Sbjct: 18  QEHAPT------DQQSAIIGSEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFVAPDQV 69

Query: 66  LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112
           L LT T+ AA ++S R+   LE +     L D   + ++ K +Q   P  S
Sbjct: 70  LGLTFTRKAAQQLSQRIRKRLETLAGVPRLKDIDPTGQLEKNLQAITPTVS 120


>gi|52425154|ref|YP_088291.1| RecB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307206|gb|AAU37706.1| RecB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1205

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 26/149 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT  +    LRLLL               +L +T T+AA  E+  R+   I 
Sbjct: 7   IEASAGTGKTFTMASLYLRLLLQAGENCFFKPLEVEQILVVTFTEAATQELRERIRHRI- 65

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-------------VQ 134
              HL+ + L+ +  + + K+      ++    L+  LE P  ++             + 
Sbjct: 66  ---HLAKKQLT-QYAENKNKQVFYGTENEILADLVDSLELPVAIQRLKIAEQNMDLAAIY 121

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEE 163
           TIH FC  ++ Q+   + I  +  +  +E
Sbjct: 122 TIHGFCRRMLVQYAFNSGIHFNLQLVKDE 150


>gi|24215017|ref|NP_712498.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|24196064|gb|AAN49516.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
          Length = 732

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          DL  + K   L  + P     + A AGSGKT ++  R+  LL+ N     +  +T T  A
Sbjct: 8  DLNEEQKKAVLQVNGPV---LILAGAGSGKTRVITHRIANLLI-NHGIDRICAVTFTNKA 63

Query: 75 AAEMSHRVLEII 86
          AAEM  RV +I+
Sbjct: 64 AAEMVERVKKIV 75


>gi|323157143|gb|EFZ43266.1| helicase IV domain protein [Escherichia coli EPECa14]
          Length = 291

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263


>gi|311029838|ref|ZP_07707928.1| ATP-dependent DNA helicase [Bacillus sp. m3-13]
          Length = 628

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L+ RV  ++      P +++ +T T  AA EM  R+
Sbjct: 27 VLAGAGSGKTRVLITRVAYMVQEEKIDPKSIMLITFTAKAANEMKERL 74


>gi|167760475|ref|ZP_02432602.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC
          35704]
 gi|167661841|gb|EDS05971.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC
          35704]
          Length = 743

 Score = 37.7 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
          D +++ + E +L ++      + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 5  DTLNEQQKEAVLHTEG--PLLILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNK 62

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV +++
Sbjct: 63 AAGEMRERVDKLV 75


>gi|87120740|ref|ZP_01076633.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121]
 gi|86163968|gb|EAQ65240.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121]
          Length = 682

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 49/168 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++  ++  L+    + +T ++ +T T  AA EM  RV+ +++       
Sbjct: 32  VLAGAGSGKTSVITTKIAYLIQECGYKATNIVAVTFTNKAAREMKERVVSMLS------- 84

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                             D S+             GLK+ T H     I+++   +A + 
Sbjct: 85  -----------------KDESR-------------GLKISTFHNLGLTILRKEYAKAGLK 114

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISN 200
             F + D + S  LI+E         +LD   NE+  +A +  + ISN
Sbjct: 115 QGFTLFDSQDSLTLIKE---------ILDKEFNEQTDEANFCQMTISN 153


>gi|25027347|ref|NP_737401.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492628|dbj|BAC17601.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 1175

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTL 65
           QEH+ T       +   ++ ++P     V A AG+GKT  +  RV+  L+AN  A P  +
Sbjct: 112 QEHAPT------AQQAAIIGAEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFAAPDQV 163

Query: 66  LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112
           L LT T+ AA ++S R+   LE +     L D   S  I + +Q   P  S
Sbjct: 164 LGLTFTRKAAQQLSQRIRQRLETLAGIPTLRDLDPSGGIARSLQAITPTVS 214


>gi|289751888|ref|ZP_06511266.1| superfamily protein I DNA and RNA helicase [Mycobacterium
          tuberculosis T92]
 gi|289692475|gb|EFD59904.1| superfamily protein I DNA and RNA helicase [Mycobacterium
          tuberculosis T92]
          Length = 349

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PS 63
          S  E +  + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN +  P 
Sbjct: 11 SPAELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPG 69

Query: 64 TLLCLTHTKAAAAEMSHRV 82
           +L LT T+ AA ++  RV
Sbjct: 70 QVLGLTFTRKAAGQLLRRV 88


>gi|238899306|ref|YP_002924989.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467067|gb|ACQ68841.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 676

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 11/85 (12%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLE----- 84
           T    V A AGSGKT +++ ++  L+    + S  +  +T T  AA EM  RV +     
Sbjct: 18  TGPCLVLAGAGSGKTRVIIHKIAHLIRRCGYLSRQIAAVTFTNKAAREMKERVADILGRK 77

Query: 85  -----IITAWSHLSDEILSAEITKI 104
                II+ +  L  EI+ AEI ++
Sbjct: 78  ETFGLIISTFHALGLEIIRAEIAQL 102


>gi|254520983|ref|ZP_05133038.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14]
 gi|219718574|gb|EED37099.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14]
          Length = 1226

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 18/151 (11%)

Query: 21  KSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           +  Q +A DP  +        + A+AG+GKT  L     RL++        +L +T T A
Sbjct: 8   EESQRMAGDPYLTLPLQGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDA 67

Query: 74  AAAEMSHRVLEIITAWSHL----------SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           A  E+  R+ E +   + L           D  L+ E+ +   +   +S  +  R L + 
Sbjct: 68  ATQELRKRIRERLALAARLVDLEPAEGEAPDVRLTREVLQRHLQGGTESAATLKRRLQVA 127

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             E      + TIH FC  ++++  LE+  T
Sbjct: 128 ADEIDLA-SIFTIHGFCTRVLREHALESGHT 157


>gi|197301471|ref|ZP_03166550.1| hypothetical protein RUMLAC_00202 [Ruminococcus lactaris ATCC
          29176]
 gi|197299431|gb|EDY33952.1| hypothetical protein RUMLAC_00202 [Ruminococcus lactaris ATCC
          29176]
          Length = 758

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVL 83
          D + +  V+AN GSGKT +L+ ++L L  +    P  ++ LT T  AA E+  R++
Sbjct: 23 DESPACVVNANVGSGKTTVLIAKILYLYQVKQIQPEEMIVLTFTNKAADEIKERLI 78


>gi|317011613|gb|ADU85360.1| DNA helicase II [Helicobacter pylori SouthAfrica7]
          Length = 681

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87
          A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  R L+++ 
Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLLN 80


>gi|317507957|ref|ZP_07965651.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316253745|gb|EFV13121.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 1070

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
          ++ ++ +   P  S+ V A AGSGKT  +  RV+  L+AN    P  +L LT T++AA  
Sbjct: 17 SEEQERVIGAPLASSVVLAGAGSGKTETIAARVV-WLIANGLVEPEQVLGLTFTRSAARG 75

Query: 78 MSHRV 82
          M  R+
Sbjct: 76 MLSRI 80


>gi|308177921|ref|YP_003917327.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
 gi|307745384|emb|CBT76356.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 1105

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 6/99 (6%)

Query: 8   QEHSETI-DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPST 64
           QE SE + +    T  +  + + P     V A AGSGKT  +  +V+  L+AN    P  
Sbjct: 9   QELSEALGEQFPPTAQQAEIVAAPLEPMLVIAGAGSGKTKTMADKVV-WLVANQLVRPEE 67

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           +L +T T+ AA E+S R+   I     ++  +LSAE T+
Sbjct: 68  ILGVTFTRKAAGELSIRIRAKIAQL--VATGLLSAEETR 104


>gi|262375711|ref|ZP_06068943.1| ATP-dependent DNA helicase Rep [Acinetobacter lwoffii SH145]
 gi|262309314|gb|EEY90445.1| ATP-dependent DNA helicase Rep [Acinetobacter lwoffii SH145]
          Length = 679

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 39/156 (25%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKA 73
           L SQ   +QL A   T+    V A AGSGKT ++ +++  L+     P+  +  +T T  
Sbjct: 3   LASQLNDKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVKHCGIPAHRITAMTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++T                                      E   G+ V
Sbjct: 63  AAREMKERVSKLLTR-------------------------------------EESKGVSV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            T H F   +++Q      + ++F+I D +  K+++
Sbjct: 86  STFHTFGLNMLRQELKHTPLKNNFSILDADDCKRIL 121


>gi|254521548|ref|ZP_05133603.1| DNA helicase II [Stenotrophomonas sp. SKA14]
 gi|219719139|gb|EED37664.1| DNA helicase II [Stenotrophomonas sp. SKA14]
          Length = 730

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L  R+  L   +  P+  +  +T
Sbjct: 4  SHLLDGLNPAQREAV--SAPPGHHLVLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AA EM HR+
Sbjct: 62 FTNKAAGEMRHRI 74


>gi|109948205|ref|YP_665433.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715426|emb|CAK00434.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 681

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  R L+++
Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLL 79


>gi|67639455|ref|ZP_00438310.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei GB8 horse
           4]
 gi|238520001|gb|EEP83465.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei GB8 horse
           4]
          Length = 389

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|302390294|ref|YP_003826115.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM
          16646]
 gi|302200922|gb|ADL08492.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM
          16646]
          Length = 731

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
          ++ +S    EQ  A + P     + A AGSGKT +L  R+  L+      P +++ +T T
Sbjct: 1  MNYLSDLNEEQRKAVTHPGGPLLILAGAGSGKTRVLTYRIAYLIEKMGVDPGSIMAITFT 60

Query: 72 KAAAAEMSHRVLEIITAWS 90
            AA EM  R+ E +  W+
Sbjct: 61 NKAAQEMKERI-EKLLPWA 78


>gi|149279369|ref|ZP_01885500.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39]
 gi|149229895|gb|EDM35283.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39]
          Length = 747

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT ++  RV  L+        +L LT T  A+ +M  R++ +I
Sbjct: 2  IVAGAGSGKTRVITYRVAHLIEKGVDAFNILVLTFTNKASKDMRERIMNVI 52


>gi|149198486|ref|ZP_01875531.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa
           HTCC2155]
 gi|149138492|gb|EDM26900.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa
           HTCC2155]
          Length = 1198

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 26/148 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AG+GKT+ +    L  +L     S +L +T T+ A  E+  RV            +
Sbjct: 19  IEASAGTGKTYSIANIFLHFILKGRDVSEILVVTFTEDATKELRDRVR-----------K 67

Query: 96  ILSAEITKIQGKKPNKSDMSKA------------RHLLITILETPGGLKVQTIHAFCEAI 143
            LS  + +I+G    +    KA            R L + ++     + + TIH FC+ +
Sbjct: 68  NLSKALLQIRGDVTEEDPTLKAIIEIYPHQDENRRRLELALVNFDQAV-ISTIHGFCQRM 126

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171
           +++   E++ T    +  ++   KLI+E
Sbjct: 127 LKENAFESHSTFDMELVTDD--SKLIDE 152


>gi|194367719|ref|YP_002030329.1| DNA-dependent helicase II [Stenotrophomonas maltophilia R551-3]
 gi|194350523|gb|ACF53646.1| DNA helicase II [Stenotrophomonas maltophilia R551-3]
          Length = 730

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L  R+  L   +  P+  +  +T
Sbjct: 4  SHLLDGLNPAQREAV--SAPPGHHLVLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AA EM HR+
Sbjct: 62 FTNKAAGEMRHRI 74


>gi|225023801|ref|ZP_03712993.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC
          23834]
 gi|224943456|gb|EEG24665.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC
          23834]
          Length = 720

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 22 SEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79
          +EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T  AA EM 
Sbjct: 3  NEQLSAVTWPAQSALVLAGAGSGKTKVLTTRIAWLLHSGQASLHSVMAVTFTNKAAKEMR 62

Query: 80 HRV 82
           R+
Sbjct: 63 ARL 65


>gi|254412445|ref|ZP_05026219.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180755|gb|EDX75745.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 1139

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  L  R+  L+L +   P  +L +T T  AA EM  R+
Sbjct: 33 VVAGAGSGKTRALTYRIANLILTHKVAPENILAVTFTNKAAREMKSRI 80


>gi|149204193|ref|ZP_01881161.1| UvrD/REP helicase [Roseovarius sp. TM1035]
 gi|149142635|gb|EDM30680.1| UvrD/REP helicase [Roseovarius sp. TM1035]
          Length = 779

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ L+    A P  +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTTRIVHLMNTGRAGPGDILAVTFTNKAAREMKERV 95


>gi|15612436|ref|NP_224089.1| putative ATP-dependent DNA helicase [Helicobacter pylori J99]
 gi|4155998|gb|AAD06960.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
          Length = 681

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  R L+++
Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLL 79


>gi|268680252|ref|YP_003304683.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618283|gb|ACZ12648.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 681

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
          A AGSGKT  +  R+  LL      +  L LT T  AA+EM  R + +I + ++
Sbjct: 26 AGAGSGKTKTITSRLSYLLSLGIPSANTLTLTFTNKAASEMRERAMAMIGSHTY 79


>gi|237730918|ref|ZP_04561399.1| DNA helicase IV [Citrobacter sp. 30_2]
 gi|226906457|gb|EEH92375.1| DNA helicase IV [Citrobacter sp. 30_2]
          Length = 691

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 223 AGAGSGKTSVLVARAGWLLARGEAAPEQILLLAFGRKAAQEMDDRIRE 270


>gi|251799681|ref|YP_003014412.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2]
 gi|247547307|gb|ACT04326.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2]
          Length = 785

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+      P ++L +T T  AA EM  RV  +I
Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREMQARVAALI 82


>gi|86749146|ref|YP_485642.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86572174|gb|ABD06731.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           HaA2]
          Length = 845

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P+ +L +T T  AA EM  R+ +++
Sbjct: 55  VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106


>gi|91977833|ref|YP_570492.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91684289|gb|ABE40591.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           BisB5]
          Length = 847

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P+ +L +T T  AA EM  R+ +++
Sbjct: 55  VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106


>gi|117926757|ref|YP_867374.1| ATP-dependent DNA helicase Rep [Magnetococcus sp. MC-1]
 gi|117610513|gb|ABK45968.1| ATP-dependent DNA helicase, Rep family [Magnetococcus sp. MC-1]
          Length = 673

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +L +R+  ++    A P  +L +T T  AA EM +RV
Sbjct: 26 VLAGAGSGKTRVLTRRLAWIIQQQQASPEEVLAVTFTNKAAKEMRNRV 73


>gi|283795947|ref|ZP_06345100.1| UvrD/REP helicase [Clostridium sp. M62/1]
 gi|291076588|gb|EFE13952.1| UvrD/REP helicase [Clostridium sp. M62/1]
          Length = 1133

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A+ P RS  V A  G+GKT  L  R+  LL +    PS +  +T TK AA E+  R+
Sbjct: 521 AAVPARSMAVIAGPGTGKTGTLTARIRCLLEVRRVRPSEITAVTFTKRAAEELRERL 577


>gi|222152848|ref|YP_002562025.1| ATP-dependent exonuclease subunit A [Streptococcus uberis 0140J]
 gi|251764571|sp|B9DRV0|ADDA_STRU0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
          Full=ATP-dependent helicase/nuclease AddA
 gi|222113661|emb|CAR41583.1| putative ATP-dependent exonuclease subunit A [Streptococcus
          uberis 0140J]
          Length = 1220

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          VSA+AGSGKT ++V+R++  +L       +   T T  AA E+  R+
Sbjct: 45 VSASAGSGKTFVMVERIIDKVLRGISIENMFISTFTVKAANELKERL 91


>gi|218885868|ref|YP_002435189.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756822|gb|ACL07721.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1161

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 23/138 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS----------------TLLCLTHTKAAAAEMS 79
           + A+AGSGKT+ L +R L  LLA A                    +L +T T  AA+EM 
Sbjct: 9   IKASAGSGKTYTLTRRFLS-LLAGARDEDGRACSLAVEGGHCWPDILAVTFTNKAASEMK 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV+ ++    H   +   A      G  P     ++A   +  IL   G L ++TI + 
Sbjct: 68  ERVIRLLK--EHALADPAQARKDGGDGAWPP----ARAARWVDIILRRYGALNIRTIDSL 121

Query: 140 CEAIMQQFPLEANITSHF 157
              +++   LE ++   F
Sbjct: 122 LTMLVRLAALELSLPPDF 139


>gi|284992622|ref|YP_003411176.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065867|gb|ADB76805.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 1120

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHR 81
           +++++   R   V A AGSGKT  +  RV   L+AN    P  +L LT T+ AA+E++ R
Sbjct: 53  RVVSAPADRPLVVVAGAGSGKTETMAARVC-WLVANELVAPDAVLGLTFTRKAASELNER 111

Query: 82  V 82
           +
Sbjct: 112 I 112


>gi|87122397|ref|ZP_01078278.1| related to ATP-dependent DNA helicase II (Rep) [Marinomonas sp.
          MED121]
 gi|86162372|gb|EAQ63656.1| related to ATP-dependent DNA helicase II (Rep) [Marinomonas sp.
          MED121]
          Length = 766

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 17 ISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          ++Q   EQL  + ++   +A + A AG+GKT  L+ R+  L+     P  +      K+A
Sbjct: 1  MTQYTQEQLAVIQANTNINAKIIAVAGAGKTTTLIARINHLIEQGVQPDRIAVFMFNKSA 60

Query: 75 AAEMSHRVLEIITAWS 90
            E S R+L+ +T  S
Sbjct: 61 QEEFSQRLLQAMTHQS 76


>gi|329119934|ref|ZP_08248608.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464090|gb|EGF10401.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 1265

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 14/125 (11%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII----- 86
           +A + A+AG+GKT+ +     RL+L    P   +L +T TKAA AE+  R+   +     
Sbjct: 92  TALIEASAGTGKTYGIAALFTRLILLEKLPVDKVLVVTFTKAATAELKTRLRARLDEALR 151

Query: 87  ----TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
                A    +D  +   + +   ++P +    +    L   L       + TIH FC+ 
Sbjct: 152 RIRGDATESPADPFMQKLLAQAAAQEPRE----RLEMRLKAALSQFDNAAIYTIHGFCQR 207

Query: 143 IMQQF 147
           I+  +
Sbjct: 208 ILGDY 212


>gi|256847800|ref|ZP_05553245.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715489|gb|EEU30465.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis
           101-4-CHN]
          Length = 759

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 41/155 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           ++  + E +LA++      V A AGSGKT +L  RV  L+   N  P  +L +T T  AA
Sbjct: 8   MNDKQQEAVLATEG--PVLVMAGAGSGKTRVLTHRVAYLIEEKNVLPWHILAITFTNKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R                   I K+ G   N                    + V T
Sbjct: 66  REMKER-------------------IGKLLGDSAND-------------------IWVST 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            HA C  I+++   +    + F IAD  + + L++
Sbjct: 88  FHALCVRILRRDIDKLGFNTAFTIADPGEQRTLMK 122


>gi|219559253|ref|ZP_03538329.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
          Length = 356

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PS 63
           S  E +  + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN +  P 
Sbjct: 30  SPAELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPG 88

Query: 64  TLLCLTHTKAAAAEMSHRV 82
            +L LT T+ AA ++  RV
Sbjct: 89  QVLGLTFTRKAAGQLLRRV 107


>gi|254448414|ref|ZP_05061875.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015]
 gi|198262027|gb|EDY86311.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015]
          Length = 671

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++ +++ RL+    + P  +  +T T  AA EM  R+
Sbjct: 20 VLAGAGSGKTRVITEKIARLIGREGYEPQQIFAVTFTNKAAREMLERI 67


>gi|53802296|ref|YP_113003.1| ATP-dependent DNA helicase UvrD [Methylococcus capsulatus str.
           Bath]
 gi|53756057|gb|AAU90348.1| ATP-dependent DNA helicase, UvrD/REP family [Methylococcus
           capsulatus str. Bath]
          Length = 1469

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 19  QTKSEQLLASDPTR--SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           Q  ++Q + +D     +  V A  GSGKT +LV R+  L+ +   +P  +L L + + AA
Sbjct: 851 QNPAQQRIVADDREQTNVLVLAGPGSGKTRVLVHRIAYLIRVRRENPRGILALAYNRHAA 910

Query: 76  AEMSHRVLEII 86
           AE+  R+  +I
Sbjct: 911 AEIRKRLAGLI 921


>gi|85703443|ref|ZP_01034547.1| DNA helicase II, putative [Roseovarius sp. 217]
 gi|85672371|gb|EAQ27228.1| DNA helicase II, putative [Roseovarius sp. 217]
          Length = 779

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ L+    A P  +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTTRIVHLMNTGRAGPGDILAVTFTNKAAREMKERV 95


>gi|57505386|ref|ZP_00371314.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter upsaliensis RM3195]
 gi|57016211|gb|EAL52997.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter upsaliensis RM3195]
          Length = 673

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQL A+        + A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSKLNEEQLKAAKTNFGHNLIIASAGTGKTSTIVARIAFLLQQGISPERIMLLTFTNKAS 62

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 63 KEMITRL 69


>gi|269218749|ref|ZP_06162603.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str.
          F0332]
 gi|269211860|gb|EEZ78200.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str.
          F0332]
          Length = 1158

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          V+A AGSGKT  +  R+   + A    P  +L LT T+ AA E+S RV
Sbjct: 47 VTAGAGSGKTATMANRIAYHVAAGRVSPEEVLGLTFTRKAAGELSQRV 94


>gi|331091397|ref|ZP_08340236.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404261|gb|EGG83808.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 741

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV +I+
Sbjct: 24 ILAGAGSGKTRVLTHRISYLIEEKGVNPWNILAITFTNKAAGEMRERVDKIV 75


>gi|317178183|dbj|BAJ55972.1| DNA helicase II [Helicobacter pylori F16]
          Length = 681

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  L  R+  L+ A   PS   L LT T  A+ EM  R L+++
Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLL 79


>gi|310826557|ref|YP_003958914.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612]
 gi|308738291|gb|ADO35951.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612]
          Length = 734

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT  ++ R+  ++ +  A PS +L +T T  AA EM  R+
Sbjct: 24 ILAGAGSGKTRTIIHRIAYIIESKKAWPSQILAITFTNKAAGEMRERI 71


>gi|149197452|ref|ZP_01874503.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
 gi|149139470|gb|EDM27872.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
          Length = 674

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 39/159 (24%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+ +   EQ  A   T +   + A AG+GKT ++  R+  ++ +  A P  +L +T T  
Sbjct: 4   LLDRLNDEQRQAVTTTEKPLLILAGAGTGKTMVVTSRIAFIVQSGRAEPGEILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R   +I                   G+K  K                   L V
Sbjct: 64  AANEMKERAGRLI-------------------GQKAVKD------------------LWV 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            T H+F   I++++  +A     F +A+      LI++ 
Sbjct: 87  STFHSFGMKILRKYAYQAGYAPDFTLAEYGDQVGLIKQG 125


>gi|146182736|ref|XP_001025134.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143751|gb|EAS04889.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 476

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 16/138 (11%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV--------L 83
           +     A AG+GKT + V  VL  L  +A P + L L HT+  A ++ +           
Sbjct: 76  KDVLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRLGKFTNF 135

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF---- 139
           ++   +  + +   S +I  ++ KKP+    +  R L + I   P  ++ Q I  F    
Sbjct: 136 KVKAVYGGVEE---SVDIHTLKTKKPHILVATPGRCLSL-IKAKPSVIETQNIEYFIIDE 191

Query: 140 CEAIMQQFPLEANITSHF 157
           C+ ++    + +++ + F
Sbjct: 192 CDRVLSSNKMRSDVQNIF 209


>gi|152987976|ref|YP_001349289.1| putative helicase [Pseudomonas aeruginosa PA7]
 gi|150963134|gb|ABR85159.1| probable helicase [Pseudomonas aeruginosa PA7]
          Length = 649

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 14  IDLISQTKSEQ---LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           + ++S    EQ   +L   P   A + A AGSGK+  LV RV+ +L      P  L  ++
Sbjct: 106 LGVVSPPSEEQWAMILCRQPL--ARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVIS 163

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSD 94
            T A+ A++  ++L ++  W +  D
Sbjct: 164 FTNASCAQLREQLLRVLAHWEYPFD 188


>gi|148259806|ref|YP_001233933.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|146401487|gb|ABQ30014.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
          Length = 639

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 45/181 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
           +D +S T+ + +   D   +A V A  G GKT +L  R+ R+L + A  +  +L LT T 
Sbjct: 9   LDRLSPTQRQAVDWED--GAALVLAGPGVGKTTVLTTRIARILDSTAGKNFRILALTFTT 66

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A  EM  RV  I+            AE T I                            
Sbjct: 67  KAGDEMRERVEAIVPGL---------AERTVI---------------------------- 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK-KLIEEA---KKSTLASIMLDNNEEL 188
             T H+FC  +++Q      I   F I D+++ + +L+++A     S  A++  D+   L
Sbjct: 90  -GTFHSFCAQVLRQHGSHLAIKPDFGIYDQDEDRAELLKDALEQAASHGAAVTADDTRWL 148

Query: 189 K 189
           +
Sbjct: 149 R 149


>gi|195978018|ref|YP_002123262.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|195974723|gb|ACG62249.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
          Length = 765

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERALALSPA 78


>gi|322389226|ref|ZP_08062787.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
          903]
 gi|321144131|gb|EFX39548.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
          903]
          Length = 767

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++  A
Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYQLNPA 84


>gi|260662791|ref|ZP_05863685.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum
          28-3-CHN]
 gi|260552872|gb|EEX25871.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum
          28-3-CHN]
          Length = 756

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+   L+   H  P  +L +T T  AA EM  RV +++
Sbjct: 27 VMAGAGSGKTRVLTHRIA-YLIEERHVLPWHILAITFTNKAAREMKERVAKLL 78


>gi|225868652|ref|YP_002744600.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
          zooepidemicus]
 gi|225701928|emb|CAW99448.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
          zooepidemicus]
          Length = 763

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERALALSPA 78


>gi|120402806|ref|YP_952635.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955624|gb|ABM12629.1| ATP-dependent DNA helicase, Rep family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 710

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
          + E +LA  P     V A AG+GKT  + +R+  L+ A    P  +L +T T+ AA EM 
Sbjct: 22 QREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFTQRAAGEMR 79

Query: 80 HRV 82
           R+
Sbjct: 80 GRL 82


>gi|258514808|ref|YP_003191030.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778513|gb|ACV62407.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 808

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 30/142 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           +SA AG+GKT +++ R+  L L +  PS     ++ +T T  AA +M  R+ E +  + H
Sbjct: 116 ISAGAGTGKTTVMINRL--LYLKHIDPSLSFAEIVMITFTNEAAVQMRQRLAEKLINYYH 173

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           ++                        +   +  LE    +++ T+HAF + ++     E 
Sbjct: 174 VT-----------------------GQRKYLEWLEDTQKMQISTVHAFAKYLLGTVGQEL 210

Query: 152 NITSHFAIADEE-QSKKLIEEA 172
             +   A+     Q +++IE+A
Sbjct: 211 GFSPSVALRGYHFQKRRIIEKA 232


>gi|58584193|ref|YP_203209.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84625962|ref|YP_453334.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|58428787|gb|AAW77824.1| DNA helicase II [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369902|dbj|BAE71060.1| DNA helicase II [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 728

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L+ R+  L      P+  +  +T
Sbjct: 4  SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61

Query: 70 HTKAAAAEMSHR 81
           T  AA EM HR
Sbjct: 62 FTNKAAGEMRHR 73


>gi|299140726|ref|ZP_07033864.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735]
 gi|298577692|gb|EFI49560.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735]
          Length = 761

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  ++  L+      P ++L LT T  AA EM  R+ +++
Sbjct: 22 VIAGAGSGKTRVLTYKIAYLIDEKQFEPWSILALTFTNKAANEMRSRIGKVV 73


>gi|225388641|ref|ZP_03758365.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme
          DSM 15981]
 gi|225045317|gb|EEG55563.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme
          DSM 15981]
          Length = 769

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  RV  L+     +P  ++ +T T  AA EM  RV +++
Sbjct: 15 VLAGAGSGKTRVLTHRVAYLIEEKEVNPWNIMAITFTNKAAGEMRERVDKLV 66


>gi|299783521|gb|ADJ41519.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum CECT
          5716]
          Length = 756

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+   L+   H  P  +L +T T  AA EM  RV +++
Sbjct: 27 VMAGAGSGKTRVLTHRIA-YLIEERHVLPWHILAITFTNKAAREMKERVAKLL 78


>gi|259506514|ref|ZP_05749416.1| probable dna helicase II protein [Corynebacterium efficiens YS-314]
 gi|259165934|gb|EEW50488.1| probable dna helicase II protein [Corynebacterium efficiens YS-314]
          Length = 1067

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTL 65
           QEH+ T       +   ++ ++P     V A AG+GKT  +  RV+  L+AN  A P  +
Sbjct: 4   QEHAPT------AQQAAIIGAEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFAAPDQV 55

Query: 66  LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112
           L LT T+ AA ++S R+   LE +     L D   S  I + +Q   P  S
Sbjct: 56  LGLTFTRKAAQQLSQRIRQRLETLAGIPTLRDLDPSGGIARSLQAITPTVS 106


>gi|227515526|ref|ZP_03945575.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC
          14931]
 gi|227086139|gb|EEI21451.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC
          14931]
          Length = 760

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+   L+   H  P  +L +T T  AA EM  RV +++
Sbjct: 31 VMAGAGSGKTRVLTHRIA-YLIEERHVLPWHILAITFTNKAAREMKERVAKLL 82


>gi|308071013|ref|YP_003872618.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681]
 gi|305860292|gb|ADM72080.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681]
          Length = 774

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV ++I
Sbjct: 30 IMAGAGSGKTRVLTHRIAYLIATRKTAPWGILAITFTNKAAREMQDRVSKLI 81


>gi|281425747|ref|ZP_06256660.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302]
 gi|281400155|gb|EFB30986.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302]
          Length = 761

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  ++  L+      P ++L LT T  AA EM  R+ +++
Sbjct: 22 VIAGAGSGKTRVLTYKIAYLIDEKQFEPWSILALTFTNKAANEMRSRIGKVV 73


>gi|225870395|ref|YP_002746342.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699799|emb|CAW93615.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
          equi 4047]
          Length = 763

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERALALSPA 78


>gi|83643631|ref|YP_432066.1| DNA-dependent helicase II [Hahella chejuensis KCTC 2396]
 gi|83631674|gb|ABC27641.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 721

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLT 69
           +D ++  + E + AS   R+  V A AGSGKT +LV R+  L+      AH   ++ +T
Sbjct: 6  VLDPLNDAQREAVTAS--ARNLLVLAGAGSGKTRVLVHRMAWLIQVERIGAH--AIMAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AA EM  RV
Sbjct: 62 FTNKAAREMRERV 74


>gi|319947280|ref|ZP_08021513.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
          700641]
 gi|319746522|gb|EFV98782.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
          700641]
          Length = 767

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++  A
Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYQLNPA 84


>gi|242310501|ref|ZP_04809656.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239522899|gb|EEQ62765.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 702

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  +  R+  L+      PS  L LT T  AA EM  R L +I
Sbjct: 28 AGAGSGKTKTITTRLAYLIDEVGIPPSNTLTLTFTNKAAQEMQKRALNMI 77


>gi|21233448|ref|NP_639365.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66770412|ref|YP_245174.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|21115293|gb|AAM43247.1| DNA helicase II [Xanthomonas campestris pv. campestris str. ATCC
          33913]
 gi|66575744|gb|AAY51154.1| DNA helicase II [Xanthomonas campestris pv. campestris str. 8004]
          Length = 728

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L+ R+  L      P+  +  +T
Sbjct: 4  SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61

Query: 70 HTKAAAAEMSHR 81
           T  AA EM HR
Sbjct: 62 FTNKAAGEMRHR 73


>gi|289670782|ref|ZP_06491857.1| DNA-dependent helicase II [Xanthomonas campestris pv. musacearum
          NCPPB4381]
          Length = 728

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L+ R+  L      P+  +  +T
Sbjct: 4  SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61

Query: 70 HTKAAAAEMSHR 81
           T  AA EM HR
Sbjct: 62 FTNKAAGEMRHR 73


>gi|257064330|ref|YP_003144002.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
 gi|256791983|gb|ACV22653.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
          Length = 772

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 45/171 (26%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           ID +++ + E +L ++      V A AGSGKT +L  R+  ++   N  P  ++ +T T 
Sbjct: 4   IDSLNEPQREAVLCTEG--PLLVLAGAGSGKTRVLTYRIAHMVQDLNVPPWQIMAITFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                              AR           G+ 
Sbjct: 62  KAANEMRERLGRLVG---------------------------PSAR-----------GMW 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           V T H+ C  I++        +  F I D++ +K+L+    K  +A + LD
Sbjct: 84  VSTFHSMCVRILRVDCELLGFSKSFTIYDDDDTKRLL----KDVMAGLDLD 130


>gi|163857120|ref|YP_001631418.1| DNA helicase II [Bordetella petrii DSM 12804]
 gi|163260848|emb|CAP43150.1| DNA helicase II [Bordetella petrii]
          Length = 752

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
          ++ Q   EQ  A +   + A V A AGSGKT +L  R+  L+    A P  LL +T T  
Sbjct: 1  MLEQLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 60

Query: 74 AAAEMSHRV 82
          AA EM  R+
Sbjct: 61 AAREMLARM 69


>gi|154506234|ref|ZP_02042972.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC
          29149]
 gi|153793733|gb|EDN76153.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC
          29149]
          Length = 744

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
          D +++ + E +  +D      + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 5  DTLNEQQREAVYCTDG--PLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNK 62

Query: 74 AAAEMSHRVLEII 86
          AA EM  RV  ++
Sbjct: 63 AAGEMRERVDNLV 75


>gi|330837148|ref|YP_004411789.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329749051|gb|AEC02407.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 808

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 52/174 (29%)

Query: 23  EQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++LLA  ++P R A         V A AGSGKT ++  ++   + A    P  +L +T T
Sbjct: 14  DELLAGLNEPQREAVLENSAPLLVLAGAGSGKTRVITTKIAWCIRALGIAPWKILAVTFT 73

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RVL ++                      P+ +               P   
Sbjct: 74  NKAAGEMRDRVLAMV----------------------PDAN---------------PQDF 96

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA----KKSTLASIM 181
            ++T H+F    +++      + S F I D+E S  L+  A    KK  L+  M
Sbjct: 97  MIRTFHSFGAWFLRRHGELLGLNSGFTIYDDEDSLSLLASAYPEFKKKELSPYM 150


>gi|316933213|ref|YP_004108195.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315600927|gb|ADU43462.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 863

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P+ +L +T T  AA EM  R+ +++
Sbjct: 55  VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106


>gi|260590017|ref|ZP_05855930.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
 gi|331084334|ref|ZP_08333438.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|260539529|gb|EEX20098.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
 gi|330401598|gb|EGG81179.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 736

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  ++ +T T  AA EM  RV +I+
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAGEMRERVDKIV 75


>gi|81429165|ref|YP_396166.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610808|emb|CAI55859.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K]
          Length = 749

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  RV   L+   H  P  +L +T T  AA EM  RV  ++
Sbjct: 27 IMAGAGSGKTRVLTHRVA-YLIEEKHVLPWRILAITFTNKAAREMRERVGNLL 78


>gi|269796045|ref|YP_003315500.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098230|gb|ACZ22666.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542]
          Length = 1111

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 11 SETIDLISQ---TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTL 65
          ++  DL+ Q   T  +  +   P     V A AGSGKT  +  RV+  L+AN    P  +
Sbjct: 11 ADIADLLGQHRPTPEQTAVIEAPLAPMLVVAGAGSGKTETMSARVV-WLIANGLVEPQEV 69

Query: 66 LCLTHTKAAAAEMS 79
          L LT T+ AA E+S
Sbjct: 70 LGLTFTRKAAGELS 83


>gi|218512941|ref|ZP_03509781.1| exonuclease RexA [Rhizobium etli 8C-3]
          Length = 144

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 21/149 (14%)

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T+AAA EM  R+ E                   +Q    ++SD  + +H    +
Sbjct: 8   LLIVTFTEAAAREMKERIQE------------------ALQESVNSESDPVRRQHFTKQL 49

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +  P    + T+HAFC  +++++    +I   F +  +E    L++E     L   +   
Sbjct: 50  VLLPTA-NISTLHAFCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAE 108

Query: 185 NEELKKAFYEILEISNDEDIETLISDIIS 213
           N+E  + F   +  SND   + L + + S
Sbjct: 109 NDE--RFFQLTMNFSNDRSDDGLTNLVFS 135


>gi|184155952|ref|YP_001844292.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183227296|dbj|BAG27812.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 756

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L  R+   L+   H  P  +L +T T  AA EM  RV +++
Sbjct: 27 VMAGAGSGKTRVLTHRIA-YLIEERHVLPWHILAITFTNKAAREMKERVAKLL 78


>gi|163783724|ref|ZP_02178711.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881049|gb|EDP74566.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1]
          Length = 167

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT  L  +V  +L     P  ++LC+T T  AA E+  RV  +
Sbjct: 19 VVAGAGSGKTKTLAHKVEFILSELGAPRESVLCITFTNKAAKEIGERVYSV 69


>gi|188583340|ref|YP_001926785.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179346838|gb|ACB82250.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 1143

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 29  DPTRSAWVS---------ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           DP++ A V+         A  G+GKT  LV+R+  L+     P+ +L LT +  AAAE+ 
Sbjct: 196 DPSQDAAVAHRGGPYLLQAGPGTGKTRTLVRRIESLVDEGIDPNGILVLTFSNKAAAELM 255

Query: 80  HRV 82
            R+
Sbjct: 256 DRL 258


>gi|257463715|ref|ZP_05628104.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
 gi|317061259|ref|ZP_07925744.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
 gi|313686935|gb|EFS23770.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
          Length = 717

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTL-LCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  +  R+  ++     P+ L L +T T  AA EM  RV+ +I
Sbjct: 26 AGAGSGKTRTITYRIAHMIEELGIPAYLILAVTFTNKAAKEMKERVISLI 75


>gi|46205528|ref|ZP_00048428.2| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 239

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           + A  G+GKT  LV R+ RLL   A  S +L LT +  AA E+  R+
Sbjct: 107 LQAGPGTGKTRTLVSRIERLLDRGATASEILVLTFSNKAAGELVERL 153


>gi|312867706|ref|ZP_07727912.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis
          F0405]
 gi|311096769|gb|EFQ55007.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis
          F0405]
          Length = 761

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYQLNPA 78


>gi|261392848|emb|CAX50429.1| exodeoxyribonuclease V beta chain [Neisseria meningitidis 8013]
          Length = 1204

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|310657865|ref|YP_003935586.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519]
 gi|308824643|emb|CBH20681.1| ATP-dependent DNA helicase [Clostridium sticklandii]
          Length = 720

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT ++  R+  ++      P ++L +T T  AA EM  RV  +I
Sbjct: 25 AGAGSGKTRVITYRIAHMIEDLKISPYSILAITFTNKAAKEMKERVSALI 74


>gi|296876758|ref|ZP_06900806.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
          15912]
 gi|296432260|gb|EFH18059.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
          15912]
          Length = 767

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++  A
Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYQLNPA 84


>gi|294625145|ref|ZP_06703789.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 11122]
 gi|292600564|gb|EFF44657.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 11122]
          Length = 728

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L+ R+  L      P+  +  +T
Sbjct: 4  SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61

Query: 70 HTKAAAAEMSHR 81
           T  AA EM HR
Sbjct: 62 FTNKAAGEMRHR 73


>gi|189183408|ref|YP_001937193.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda]
 gi|189180179|dbj|BAG39959.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda]
          Length = 716

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          V A AG+GKT ++  R+  ++    A P  +L +T T  AA EM  R+ EI
Sbjct: 25 VLAGAGTGKTRVITYRIAYIIDQFMALPEEILAVTFTNKAATEMQSRIAEI 75


>gi|188579188|ref|YP_001916117.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523640|gb|ACD61585.1| DNA helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 728

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L+ R+  L      P+  +  +T
Sbjct: 4  SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61

Query: 70 HTKAAAAEMSHR 81
           T  AA EM HR
Sbjct: 62 FTNKAAGEMRHR 73


>gi|167718946|ref|ZP_02402182.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           DM98]
          Length = 360

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|166710261|ref|ZP_02241468.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 728

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L+ R+  L      P+  +  +T
Sbjct: 4  SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61

Query: 70 HTKAAAAEMSHR 81
           T  AA EM HR
Sbjct: 62 FTNKAAGEMRHR 73


>gi|116873192|ref|YP_849973.1| ATP-dependent DNA helicase PcrA [Listeria welshimeri serovar 6b
          str. SLCC5334]
 gi|116742070|emb|CAK21194.1| ATP-dependent DNA helicase, PcrA family [Listeria welshimeri
          serovar 6b str. SLCC5334]
          Length = 733

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+   + +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERSVNPYNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 67 KAAREMKSRI 76


>gi|21244868|ref|NP_644450.1| DNA-dependent helicase II [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21110576|gb|AAM38986.1| DNA helicase II [Xanthomonas axonopodis pv. citri str. 306]
          Length = 730

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L+ R+  L      P+  +  +T
Sbjct: 6  SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 63

Query: 70 HTKAAAAEMSHR 81
           T  AA EM HR
Sbjct: 64 FTNKAAGEMRHR 75


>gi|304387905|ref|ZP_07370078.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC
           13091]
 gi|304338002|gb|EFM04139.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC
           13091]
          Length = 1212

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 29  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 88

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 89  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 147

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 148 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 186


>gi|154252878|ref|YP_001413702.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
 gi|154156828|gb|ABS64045.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
          Length = 778

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  LL    A P  +L +T T  AA EM  R+  +I
Sbjct: 53  VLAGAGTGKTRVLTTRLAHLLATRKAWPGQILAVTFTNKAAREMRDRIGALI 104


>gi|75676545|ref|YP_318966.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255]
 gi|74421415|gb|ABA05614.1| ATP-dependent DNA helicase, Rep family [Nitrobacter winogradskyi
           Nb-255]
          Length = 816

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A    +L +T T  AA EM HR+ +++
Sbjct: 55  VLAGAGTGKTRVLTTRIAHILSQGRARSGEILSVTFTNKAAREMKHRLGQML 106


>gi|54026512|ref|YP_120754.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54018020|dbj|BAD59390.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 1255

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V    G+GKT +LV      + A A P+++L LTH+K AAA++   V
Sbjct: 48 VLGGPGTGKTALLVDLAAGRIAAGADPASVLVLTHSKQAAADLRDAV 94


>gi|325265844|ref|ZP_08132530.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394]
 gi|324982482|gb|EGC18108.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394]
          Length = 684

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 14/108 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE--------- 84
           +V A AGSGKT +++++++ ++    + P  +  +T T  AA EM  R+           
Sbjct: 38  FVLAGAGSGKTRVIIEKIVHMITRCGYKPYHIAAITFTNKAANEMQERIAHRLGKEQTRG 97

Query: 85  -IITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129
             I+ +  L   IL  +   + G K N S  D S ++ +L  IL + G
Sbjct: 98  LTISTFHSLGMRILREDAPSV-GYKRNFSVLDASDSQKILTEILGSSG 144


>gi|313890094|ref|ZP_07823729.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus
          SPIN 20026]
 gi|313121455|gb|EFR44559.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus
          SPIN 20026]
          Length = 759

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R L +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKCINPWNILAITFTNKAAHEMRERALALNPA 78


>gi|303252517|ref|ZP_07338680.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|307247266|ref|ZP_07529315.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|302648485|gb|EFL78678.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|306856239|gb|EFM88393.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
          Length = 672

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T +  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|212702577|ref|ZP_03310705.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098]
 gi|212674018|gb|EEB34501.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098]
          Length = 1095

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 31/143 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLL---------------LANAHPS---TLLCLTHTKAAAAE 77
           V A+AGSGKT+ L +R L LL               L N  PS    +L +T T AAA E
Sbjct: 7   VKASAGSGKTYDLTRRFLCLLAACGSPAPAAAASCGLGNG-PSGWDEILAITFTNAAAGE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV+  + A +  + E             P   DM  A   L  IL     L ++TI 
Sbjct: 66  MRDRVIGRLKAIALGTPE----------KDIPLTPDM--AARWLDVILRDLASLNIRTID 113

Query: 138 AFCEAIMQQFPLEANITSHFAIA 160
           +   AI++   L+ ++   F  A
Sbjct: 114 SLLHAIVRSASLQLDLPPDFQPA 136


>gi|167893639|ref|ZP_02481041.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei 7894]
          Length = 343

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                       +    +   +G  P  +   + R  L    +      + TIHAFC+  
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141

Query: 144 MQQ 146
           +Q+
Sbjct: 142 LQE 144


>gi|91775555|ref|YP_545311.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT]
 gi|91709542|gb|ABE49470.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT]
          Length = 690

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+    + P  +  +T T  AA EM  RV +++  
Sbjct: 44 VLAGAGSGKTRVITQKISYLIEQCGYAPKEIAAITFTNKAAREMQERVGQLLQG 97


>gi|89097085|ref|ZP_01169976.1| PcrA [Bacillus sp. NRRL B-14911]
 gi|89088465|gb|EAR67575.1| PcrA [Bacillus sp. NRRL B-14911]
          Length = 746

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L++    +P  +L +T T  AA EM  R+
Sbjct: 29 IMAGAGSGKTRVLTHRIGYLMVEKGVNPYNILAITFTNKAAREMRERI 76


>gi|253688921|ref|YP_003018111.1| UvrD/REP helicase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755499|gb|ACT13575.1| UvrD/REP helicase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 685

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   L+    A P  +L L   + AA EM+ R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAAWLMHRQEAAPDQILLLAFGRKAAEEMNERIQE 263


>gi|165975735|ref|YP_001651328.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|165875836|gb|ABY68884.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
          Length = 672

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T +  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|77464192|ref|YP_353696.1| DNA helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388610|gb|ABA79795.1| Possible DNA helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 1715

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 29/129 (22%)

Query: 23   EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
            ++++A D   +   V A  GSGKT +LV R+  LL +    P  +L L++ + AAAE+  
Sbjct: 1103 QEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAEIRA 1162

Query: 81   RVLEII---------------------------TAWSHLSDEILSAEITKIQGKKPNKSD 113
            R+  ++                           TA  H   ++L   + +I G+  ++++
Sbjct: 1163 RLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQHDFQDVLREAVRQINGEGLSRTE 1222

Query: 114  MSKARHLLI 122
                R  LI
Sbjct: 1223 AEAQREALI 1231


>gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM
          15606]
 gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM
          15606]
          Length = 901

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A+ G GKT IL +RV +        S +LCLT T  AA  M  R+
Sbjct: 24 VLASPGCGKTQILAERVAKAYAMGVSFSNMLCLTFTNRAARGMQERI 70


>gi|294631280|ref|ZP_06709840.1| UvrD/Rep family helicase [Streptomyces sp. e14]
 gi|292834613|gb|EFF92962.1| UvrD/Rep family helicase [Streptomyces sp. e14]
          Length = 988

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV
Sbjct: 38 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERV 91


>gi|294666234|ref|ZP_06731487.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 10535]
 gi|292604007|gb|EFF47405.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 10535]
          Length = 728

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L+ R+  L      P+  +  +T
Sbjct: 4  SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61

Query: 70 HTKAAAAEMSHR 81
           T  AA EM HR
Sbjct: 62 FTNKAAGEMRHR 73


>gi|290957554|ref|YP_003488736.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647080|emb|CBG70179.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 1223

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV
Sbjct: 40 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERV 93


>gi|21223553|ref|NP_629332.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714472|emb|CAC01314.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 1222

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV
Sbjct: 81  PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERV 134


>gi|313890533|ref|ZP_07824161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121050|gb|EFR44161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 1217

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 23/155 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW-SHLSD 94
           VSA+AGSGKT ++V+R++  ++       +   T T  AA E+  R+ +   A     SD
Sbjct: 45  VSASAGSGKTFVMVERIIDKVMRGIAIDEMFISTFTVKAATELKERLEKRFLALIKESSD 104

Query: 95  EILSAEIT-KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
               A +  ++QG       +S+A               + T+ AF + ++ Q+     I
Sbjct: 105 AEWKAYLNQQLQG-------ISQA--------------DIGTMDAFTQKLLSQYSYTLGI 143

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +  F I  ++  + +++     ++ +  +D+ E L
Sbjct: 144 SPKFRIMQDKSEQDILKNRIYESIFANYMDSKESL 178


>gi|317127162|ref|YP_004093444.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM
           2522]
 gi|315472110|gb|ADU28713.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM
           2522]
          Length = 760

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEI--------I 86
           + A AGSGKT +L  R+  L+     P  ++L +T T  AA EM  RV  I        I
Sbjct: 29  IMAGAGSGKTRVLTHRIAYLIGEKGVPPWSILAITFTNKAAREMKERVARIASTAEEIWI 88

Query: 87  TAWSHLSDEILSAEITKI 104
           + +  +   IL  +I +I
Sbjct: 89  STFHSMCVRILRRDIDRI 106


>gi|257452062|ref|ZP_05617361.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R]
 gi|257466139|ref|ZP_05630450.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917297|ref|ZP_07913537.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317058610|ref|ZP_07923095.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R]
 gi|313684286|gb|EFS21121.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R]
 gi|313691172|gb|EFS28007.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 717

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 39/134 (29%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTL-LCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT  +  R+  ++     P  L L +T T  AA EM  RV+ +I          
Sbjct: 26  AGAGSGKTRTITYRIAHMIEELGIPPYLILAVTFTNKAAKEMKERVISLI---------- 75

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                    G++  ++ +S                   T H+F   +++ +  +    ++
Sbjct: 76  ---------GEEAERATIS-------------------TFHSFGVRLLRMYGSKLGYQAN 107

Query: 157 FAIADEEQSKKLIE 170
           F I D E  K++I+
Sbjct: 108 FTIYDVEDQKRIIK 121


>gi|225020706|ref|ZP_03709898.1| hypothetical protein CORMATOL_00713 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224946652|gb|EEG27861.1| hypothetical protein CORMATOL_00713 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 697

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
          +  I+L      +Q  A+ P     + A AG+GKT  +  R+  L+       + ++ +T
Sbjct: 3  TPVINLGDLDADQQQAATAPRGPVAILAGAGTGKTRTITYRIAHLIDQGFVGGNRVMAVT 62

Query: 70 HTKAAAAEMSHRV 82
           TK AA EM+HR+
Sbjct: 63 FTKRAAGEMAHRL 75


>gi|221640075|ref|YP_002526337.1| DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221160856|gb|ACM01836.1| DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 1695

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 23   EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
            ++++A D   +   V A  GSGKT +LV R+  LL +    P  +L L++ + AAAE+  
Sbjct: 1083 QEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAEIRA 1142

Query: 81   RVLEII 86
            R+  ++
Sbjct: 1143 RLRHLV 1148


>gi|119470385|ref|ZP_01613113.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Alteromonadales bacterium TW-7]
 gi|119446310|gb|EAW27586.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Alteromonadales bacterium TW-7]
          Length = 672

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT ++  ++  L+    + +  +  +T T  AA EM  RVL+          
Sbjct: 20  VLAGAGSGKTRVITNKIAYLVQKCEYKARNIAAVTFTNKAAKEMRERVLQTLGKQEAKGL 79

Query: 86  -ITAWSHLSDEILSAEITKIQGKKPNKS 112
            ++ +  L  EI+  EIT + G KP  S
Sbjct: 80  WVSTFHTLGLEIIKKEITTL-GFKPGFS 106


>gi|33594191|ref|NP_881835.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33564266|emb|CAE43558.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
          Length = 689

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 38/137 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  LL    +    ++ LT T  AA EM+ RV  ++       D
Sbjct: 29  VLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLV-------D 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L+                               GL + T HA    ++++    A + 
Sbjct: 82  PKLAK------------------------------GLTISTFHALGVRLLREEAAHAGLK 111

Query: 155 SHFAIADEEQSKKLIEE 171
             F+I D + +  +I+E
Sbjct: 112 PQFSILDADDAMSIIQE 128


>gi|307256307|ref|ZP_07538090.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|306865133|gb|EFM97033.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
          Length = 672

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T +  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|42520776|ref|NP_966691.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
          melanogaster]
 gi|42410516|gb|AAS14625.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
          melanogaster]
          Length = 638

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AG+GKT  +  R+  ++   +A+   +L +T T  AA EM  RVLE+
Sbjct: 27 AGAGTGKTRTITSRIAHIIRNGHAYSDEILAVTFTNKAANEMVSRVLEL 75


>gi|331702041|ref|YP_004399000.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL
          B-30929]
 gi|329129384|gb|AEB73937.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL
          B-30929]
          Length = 744

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++  N   P  +L +T T  AA EM  RV +++
Sbjct: 27 IMAGAGSGKTRVLTHRIAYIIEHNHIMPWRILAITFTNKAAREMRERVSKLL 78


>gi|323351871|ref|ZP_08087522.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66]
 gi|322121928|gb|EFX93660.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66]
          Length = 762

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L+ R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLIHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|315613237|ref|ZP_07888147.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC
          49296]
 gi|315314799|gb|EFU62841.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC
          49296]
          Length = 763

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 VMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|187931893|ref|YP_001891878.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
          tularensis subsp. mediasiatica FSC147]
 gi|187712802|gb|ACD31099.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
          tularensis subsp. mediasiatica FSC147]
          Length = 671

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++++++  L+    +P+ ++L +T T  AA +M  RV
Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKKMQERV 69


>gi|154489095|ref|ZP_02029944.1| hypothetical protein BIFADO_02407 [Bifidobacterium adolescentis
           L2-32]
 gi|154083232|gb|EDN82277.1| hypothetical protein BIFADO_02407 [Bifidobacterium adolescentis
           L2-32]
          Length = 666

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83
           V A AG+GKT  +V  +  LL    A P  +L L+ TKA+A EMS R++
Sbjct: 125 VLAGAGTGKTTTIVGYIAWLLATKRATPEEILVLSFTKASADEMSQRIM 173


>gi|17231987|ref|NP_488535.1| DNA helicase II [Nostoc sp. PCC 7120]
 gi|17133631|dbj|BAB76194.1| DNA helicase II [Nostoc sp. PCC 7120]
          Length = 772

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  L  R+  L+L +   P  +L +T T  AA EM  R+
Sbjct: 26 VVAGAGSGKTRALTYRIANLILKHRVAPENILAVTFTNKAAREMKERI 73


>gi|115524150|ref|YP_781061.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115518097|gb|ABJ06081.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           BisA53]
          Length = 846

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L +  A P  +L +T T  AA EM  R+ +++
Sbjct: 59  VLAGAGTGKTRVLTSRIAHILSSGRARPGEILSVTFTNKAAREMKLRLGQML 110


>gi|319788484|ref|YP_004147959.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis
          11-1]
 gi|317466996|gb|ADV28728.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis
          11-1]
          Length = 657

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+ +  +P+  +  +T T  +A EM  RV + I  
Sbjct: 19 VLAGAGSGKTRVIVEKIAHLIASGRYPARRIAAITFTNKSAKEMRERVAKRIRG 72


>gi|307249494|ref|ZP_07531482.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|306858487|gb|EFM90555.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
          Length = 672

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T +  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|169630597|ref|YP_001704246.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169242564|emb|CAM63592.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus]
          Length = 1058

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          LL  D T    V   +G+GKT +LV  V     A  +P+++L LT +  A+AE+ +R+
Sbjct: 18 LLDPDRTGRFVVVGGSGTGKTSLLVDIVAAHTAAGVNPASVLVLTGSNRASAELRNRI 75


>gi|39936568|ref|NP_948844.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39650424|emb|CAE28947.1| DNA helicase II [Rhodopseudomonas palustris CGA009]
          Length = 848

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P+ +L +T T  AA EM  R+ +++
Sbjct: 55  VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106


>gi|308377259|ref|ZP_07441669.2| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008]
 gi|308348310|gb|EFP37161.1| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008]
          Length = 695

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63
           S  E +  + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P 
Sbjct: 54  SPAELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPG 112

Query: 64  TLLCLTHTKAAAAEMSHRV 82
            +L LT T+ AA ++  RV
Sbjct: 113 QVLGLTFTRKAAGQLLRRV 131


>gi|52079148|ref|YP_077939.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52784515|ref|YP_090344.1| PcrA [Bacillus licheniformis ATCC 14580]
 gi|52002359|gb|AAU22301.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52347017|gb|AAU39651.1| PcrA [Bacillus licheniformis ATCC 14580]
          Length = 739

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV  I+
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVESIL 80


>gi|325142010|gb|EGC64442.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           961-5945]
 gi|325198004|gb|ADY93460.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis G2136]
          Length = 1204

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|325133701|gb|EGC56357.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           M13399]
          Length = 1204

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|303249563|ref|ZP_07335770.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|307251810|ref|ZP_07533712.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|302651637|gb|EFL81786.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306860717|gb|EFM92728.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
          Length = 672

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T +  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|166367339|ref|YP_001659612.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843]
 gi|166089712|dbj|BAG04420.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843]
          Length = 773

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
          T D + Q    Q LA +       V A AGSGKT  L  R+  L+  +   P  +L +T 
Sbjct: 4  TADYLEQLNPSQRLAVEHFCGPLLVVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTF 63

Query: 71 TKAAAAEMSHRV 82
          T  AA EM  R+
Sbjct: 64 TNKAAREMKTRI 75


>gi|161869731|ref|YP_001598898.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442]
 gi|161595284|gb|ABX72944.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442]
          Length = 1204

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|75909567|ref|YP_323863.1| ATP-dependent DNA helicase Rep [Anabaena variabilis ATCC 29413]
 gi|75703292|gb|ABA22968.1| ATP-dependent DNA helicase, Rep family [Anabaena variabilis ATCC
          29413]
          Length = 772

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  L  R+  L+L +   P  +L +T T  AA EM  R+
Sbjct: 26 VVAGAGSGKTRALTYRIANLILKHRVAPENILAVTFTNKAAREMKERI 73


>gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
          Length = 723

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
          +D ++Q + E + A+ P     + A AGSGKT +L  R++ L   N  P+ +++ +T T 
Sbjct: 2  LDHLNQNQREAVAAA-PGHYL-ILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFTN 59

Query: 73 AAAAEMSHRV 82
           AA E+  R+
Sbjct: 60 KAAGEIQQRI 69


>gi|330427927|gb|AEC19261.1| DNA helicase II [Pusillimonas sp. T7-7]
          Length = 761

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
          S    +Q   + P   A V A AGSGKT +L  R+  L+  + A P  L+ +T T  +A 
Sbjct: 4  SLNPQQQAAVTLPPAHALVLAGAGSGKTRVLTTRMAWLIQTSQASPFGLMAVTFTNKSAR 63

Query: 77 EMSHRV 82
          EM  R+
Sbjct: 64 EMLTRL 69


>gi|325202419|gb|ADY97873.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           M01-240149]
 gi|325207829|gb|ADZ03281.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 1204

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|308388971|gb|ADO31291.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           alpha710]
 gi|325129902|gb|EGC52703.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           OX99.30304]
 gi|325135992|gb|EGC58602.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M0579]
          Length = 1204

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|307260740|ref|ZP_07542429.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|306869579|gb|EFN01367.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
          Length = 672

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T +  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|149377922|ref|ZP_01895650.1| Superfamily I DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149357812|gb|EDM46306.1| Superfamily I DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 789

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           A ++A AGSGKT  L  R+  LL     P+ +L L   +AA  +  H++ E+    +  +
Sbjct: 61  AVITAVAGSGKTSTLAWRIRYLLQQGHDPARMLVLMFNRAARVDFEHKLQEVTRHLTLAT 120

Query: 94  DEI 96
            EI
Sbjct: 121 PEI 123


>gi|91202090|emb|CAJ75150.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis]
          Length = 641

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A  GSGKT +L  R+ R+L  +      +L LT T  AAAE+  RV +++  
Sbjct: 24 VLAGPGSGKTSVLTHRIARILEQSKGQHFRILALTFTNKAAAEVRGRVEKLVPG 77


>gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12]
 gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12]
          Length = 723

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
          +D ++Q + E + A+ P     + A AGSGKT +L  R++ L   N  P+ +++ +T T 
Sbjct: 2  LDHLNQNQREAVAAA-PGHYL-ILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFTN 59

Query: 73 AAAAEMSHRV 82
           AA E+  R+
Sbjct: 60 KAAGEIQQRI 69


>gi|58696814|ref|ZP_00372342.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
          simulans]
 gi|225630630|ref|YP_002727421.1| DNA helicase II [Wolbachia sp. wRi]
 gi|58536984|gb|EAL60139.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
          simulans]
 gi|225592611|gb|ACN95630.1| DNA helicase II [Wolbachia sp. wRi]
          Length = 638

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AG+GKT  +  R+  ++   +A+   +L +T T  AA EM  RVLE+
Sbjct: 27 AGAGTGKTRTITSRIAHIIRNGHAYSDEILAVTFTNKAANEMVSRVLEL 75


>gi|317486027|ref|ZP_07944881.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316922705|gb|EFV43937.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 741

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          ID+ +   ++    + P     V A AGSGKT  +V R+  L       S +L LT T+ 
Sbjct: 2  IDISTLNPAQLEAVTAPDGPVLVIAGAGSGKTRTIVHRLAWLAEQGVPASDMLLLTFTRK 61

Query: 74 AAAEMSHRVLEII 86
          A+ EM  R  +++
Sbjct: 62 ASREMLLRATDLL 74


>gi|285019926|ref|YP_003377637.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283475144|emb|CBA17643.1| probable atp-dependent dna helicase protein [Xanthomonas
          albilineans]
          Length = 658

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++V+++  L+ +  +P+  +  +T T  +A EM  RV + I
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIASGRYPAKRIAAITFTNKSAKEMRERVAKRI 72


>gi|192292387|ref|YP_001992992.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
 gi|192286136|gb|ACF02517.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
          Length = 848

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A P+ +L +T T  AA EM  R+ +++
Sbjct: 55  VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106


>gi|71657390|ref|XP_817211.1| ATP-dependent DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882388|gb|EAN95360.1| ATP-dependent DNA helicase, putative [Trypanosoma cruzi]
          Length = 834

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 11  SETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           +E   L+S     Q  A   D + S  + A AGSGKT  +  R+  ++L+   P  +L L
Sbjct: 24  AECERLVSALDEAQRAAVCEDTSASLLILAGAGSGKTLTMASRIAYIILSGVAPEKILGL 83

Query: 69  THTKAAAAEMSHRVLEII 86
             ++ AA  +  RV  ++
Sbjct: 84  CFSRQAAEALRERVATVL 101


>gi|32033668|ref|ZP_00133979.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|126207767|ref|YP_001052992.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae L20]
 gi|126096559|gb|ABN73387.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae
          serovar 5b str. L20]
          Length = 672

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T +  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|224437627|ref|ZP_03658580.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
 gi|313144079|ref|ZP_07806272.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
 gi|313129110|gb|EFR46727.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
          Length = 698

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          A AGSGKT  L  R+  L+      PS  L LT T  AA EM  R L +++
Sbjct: 32 AGAGSGKTKTLTTRLAYLINEVGIPPSATLTLTFTNKAAQEMRDRALSLLS 82


>gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23]
 gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23]
          Length = 723

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
          +D ++Q + E + A+ P     + A AGSGKT +L  R++ L   N  P+ +++ +T T 
Sbjct: 2  LDHLNQNQREAVAAA-PGHYL-ILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFTN 59

Query: 73 AAAAEMSHRV 82
           AA E+  R+
Sbjct: 60 KAAGEIQQRI 69


>gi|146308253|ref|YP_001188718.1| UvrD/REP helicase [Pseudomonas mendocina ymp]
 gi|145576454|gb|ABP85986.1| UvrD/REP helicase [Pseudomonas mendocina ymp]
          Length = 628

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           A + A AGSGK+  LV RV+ LL      P  L  ++ T A+ AE+  R+  ++  W + 
Sbjct: 116 ARIFAGAGSGKSSTLVLRVVFLLCHQEVDPKRLTVISFTNASCAELRERLQRLLGFWHYP 175

Query: 93  SD 94
            D
Sbjct: 176 HD 177


>gi|114798822|ref|YP_761616.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444]
 gi|114738996|gb|ABI77121.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444]
          Length = 781

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AG+GKT +L  R+  ++    A+PS  L +T T  AA EM  R
Sbjct: 52 VLAGAGTGKTRVLTSRLAHIVATRLAYPSQTLTVTFTNKAAREMRER 98


>gi|33603572|ref|NP_891132.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33577697|emb|CAE34962.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
          Length = 689

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 38/137 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT ++ Q++  LL    +    ++ LT T  AA EM+ RV  ++       D
Sbjct: 29  VLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLV-------D 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L+                               GL + T HA    ++++    A + 
Sbjct: 82  PKLAK------------------------------GLTISTFHALGVRLLREEAAHAGLK 111

Query: 155 SHFAIADEEQSKKLIEE 171
             F+I D + +  +I+E
Sbjct: 112 PQFSILDADDAMSIIQE 128


>gi|325002209|ref|ZP_08123321.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 815

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
          E +  + L   T  +  + + P   A V A AG+GKT  +  RV+ L+      P  +L 
Sbjct: 7  ELATALGLHPPTAEQAAVIAAPAGPALVVAGAGAGKTETMAARVVWLVATGRVLPEQVLG 66

Query: 68 LTHTKAAAAEMSHRV 82
          LT T+ AA ++  RV
Sbjct: 67 LTFTRKAAQQLGTRV 81


>gi|307254049|ref|ZP_07535896.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|307258505|ref|ZP_07540242.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|306862974|gb|EFM94921.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|306867409|gb|EFM99260.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
          Length = 672

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T +  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|288560440|ref|YP_003423926.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
 gi|288543150|gb|ADC47034.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
          Length = 1565

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 38/112 (33%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A  G+GKT +L++R+  L+      PS+LL +T T+ AA E+  R+      +  + +
Sbjct: 23  IEAGPGAGKTRVLIERIKFLINEEKVEPSSLLVITFTRKAAEELKERL------YKDIDE 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            ++S                                +++ TIHAFC  I+ +
Sbjct: 77  SVVSM-------------------------------MQISTIHAFCRVILSE 97


>gi|239931038|ref|ZP_04687991.1| putative DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439410|ref|ZP_06578800.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342305|gb|EFE69261.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 634

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 7/53 (13%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRV 82
          V+A AG+GKTH LV+R L  L  +  P      + +L LT ++AAA E+  R+
Sbjct: 29 VTAGAGAGKTHTLVRR-LDALCGHEDPDEVLEAAEILVLTFSRAAARELRERI 80


>gi|226224362|ref|YP_002758469.1| ATP-dependent DNA helicase [Listeria monocytogenes Clip81459]
 gi|225876824|emb|CAS05533.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 4b
          str. CLIP 80459]
          Length = 731

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 5  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 65 KAAREMKSRI 74


>gi|46907989|ref|YP_014378.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
          F2365]
 gi|46881259|gb|AAT04555.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes serotype
          4b str. F2365]
          Length = 733

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 67 KAAREMKSRI 76


>gi|169767922|ref|XP_001818432.1| ATP-dependent DNA helicase [Aspergillus oryzae RIB40]
 gi|83766287|dbj|BAE56430.1| unnamed protein product [Aspergillus oryzae]
          Length = 998

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          S P+    V A  GSGKT  L  RV  LL  + + P  ++C T T  A+ EM  R+ +++
Sbjct: 17 SSPSPILQVLAPPGSGKTKTLTARVAYLLAHHGYRPQDVICCTFTIKASREMRERLAKLV 76


>gi|260583198|ref|ZP_05850977.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127]
 gi|260093755|gb|EEW77664.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127]
          Length = 677

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 21 TGPCLVLAGAGSGKTRVIINKIAHLIGKCGYSPKQIAAVTFTNKAAREMKERV 73


>gi|76798891|ref|ZP_00781098.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21]
 gi|76585760|gb|EAO62311.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21]
          Length = 644

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL 83
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R +
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAI 73


>gi|326792061|ref|YP_004309882.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326542825|gb|ADZ84684.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 781

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 38/141 (26%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  L+      P ++L +T T  AA EM  R+  ++        
Sbjct: 24  ILAGAGSGKTRVLTHRIAHLVENKGVKPWSILAITFTNKAAKEMKERIGNLVAE------ 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          +    + V T H+ C  I++++      +
Sbjct: 78  -------------------------------DAVNEMWVSTFHSMCVRILRRYGERLGYS 106

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
             F I D    K LI++  K+
Sbjct: 107 RFFTIYDTSDQKTLIKDTLKA 127


>gi|190149550|ref|YP_001968075.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|307245094|ref|ZP_07527187.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|307262870|ref|ZP_07544494.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
 gi|189914681|gb|ACE60933.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|306853983|gb|EFM86195.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|306871775|gb|EFN03495.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
          Length = 672

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T +  V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|319944948|ref|ZP_08019210.1| ATP-dependent helicase PcrA [Lautropia mirabilis ATCC 51599]
 gi|319741518|gb|EFV93943.1| ATP-dependent helicase PcrA [Lautropia mirabilis ATCC 51599]
          Length = 677

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT ++  ++L L+ A      +  +T T  AAAEM+ R
Sbjct: 21 VIAGAGSGKTRVITAKLLHLIDAGFTGRAIAAITFTNKAAAEMAER 66


>gi|311107257|ref|YP_003980110.1| DNA helicase II [Achromobacter xylosoxidans A8]
 gi|310761946|gb|ADP17395.1| DNA helicase II [Achromobacter xylosoxidans A8]
          Length = 764

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A V A AGSGKT +L  R+  L+    A P  LL +T T  AA EM  R+  I+
Sbjct: 19 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNKAAREMLARMSAIL 74


>gi|257468110|ref|ZP_05632206.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC
          49185]
 gi|317062395|ref|ZP_07926880.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC
          49185]
 gi|313688071|gb|EFS24906.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC
          49185]
          Length = 725

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  +  R+  ++      P  +L +T T  AA EM  RV ++I
Sbjct: 26 AGAGSGKTRTITYRIAHMIQELGISPYKILAVTFTNKAAKEMKERVEDLI 75


>gi|108756911|ref|YP_630227.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108460791|gb|ABF85976.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus
          DK 1622]
          Length = 691

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 15/69 (21%)

Query: 30 PTRSAWVS--------ANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAA 76
          P R A V+        A AGSGKT ++  R++ LL  N  P       +L +T T  AA 
Sbjct: 9  PQREAVVTLEGPLLVLAGAGSGKTRVITHRIVHLL--NERPGLIMARNILAVTFTNKAAT 66

Query: 77 EMSHRVLEI 85
          EM  R++ +
Sbjct: 67 EMKERLVHM 75


>gi|322711061|gb|EFZ02635.1| putative ATP-dependent DNA helicase [Metarhizium anisopliae ARSEF
          23]
          Length = 992

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 10 HSETI-DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
          H ETI + +++ +   + ++ PT +  + A  GSGKTH L  RV+ L+      P+ ++ 
Sbjct: 5  HPETILNSLNEAQRRAVTSNSPTVA--ILAGPGSGKTHTLTSRVVWLVQHVGYQPADVIV 62

Query: 68 LTHTKAAAAEMSHRV 82
           T T  AA EM  R+
Sbjct: 63 ATFTVKAAREMKGRI 77


>gi|290893415|ref|ZP_06556400.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          J2-071]
 gi|290557066|gb|EFD90595.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          J2-071]
 gi|307571339|emb|CAR84518.1| ATP-dependent DNA helicase [Listeria monocytogenes L99]
          Length = 733

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 67 KAAREMKSRI 76


>gi|254853669|ref|ZP_05243017.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          R2-503]
 gi|300765955|ref|ZP_07075927.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          N1-017]
 gi|258607048|gb|EEW19656.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          R2-503]
 gi|300513341|gb|EFK40416.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          N1-017]
          Length = 733

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 67 KAAREMKSRI 76


>gi|254829488|ref|ZP_05234175.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          N3-165]
 gi|284802203|ref|YP_003414068.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578]
 gi|284995345|ref|YP_003417113.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923]
 gi|258601903|gb|EEW15228.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          N3-165]
 gi|284057765|gb|ADB68706.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578]
 gi|284060812|gb|ADB71751.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923]
          Length = 733

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 67 KAAREMKSRI 76


>gi|253998774|ref|YP_003050837.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253985453|gb|ACT50310.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 665

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++ Q++  L+      P  +  +T T  AA EM  RV  ++   S
Sbjct: 22 VLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNKAAREMQERVGHLLEGKS 77


>gi|224499522|ref|ZP_03667871.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes Finland
          1988]
 gi|224503315|ref|ZP_03671622.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          R2-561]
          Length = 733

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 67 KAAREMKSRI 76


>gi|145629666|ref|ZP_01785463.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21]
 gi|144978177|gb|EDJ87950.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21]
          Length = 671

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIGKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|119964140|ref|YP_948452.1| UvrD/REP helicase [Arthrobacter aurescens TC1]
 gi|119950999|gb|ABM09910.1| UvrD/REP helicase [Arthrobacter aurescens TC1]
          Length = 1167

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
           T  +  + + P     V A AGSGKT  +  RV+  L+AN    P  +L +T T+ AA E
Sbjct: 40  TPEQAAIIASPLSPRLVIAGAGSGKTATMADRVV-WLVANGWVRPEEVLGVTFTRKAAGE 98

Query: 78  MSHRV 82
           ++ R+
Sbjct: 99  LASRI 103


>gi|88606993|ref|YP_505476.1| UvrD/Rep family helicase [Anaplasma phagocytophilum HZ]
 gi|88598056|gb|ABD43526.1| helicase, UvrD/Rep family [Anaplasma phagocytophilum HZ]
          Length = 659

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          ++L ++ K   L  + P     + A AG+GKT  +  R+  ++    A P  +L +T T 
Sbjct: 26 LNLNAEQKEAVLQVAGPV---LILAGAGTGKTRTITARMGHIIKEGYAQPHEILAVTFTN 82

Query: 73 AAAAEMSHRVLEIITA 88
           AA EM  RV  I+TA
Sbjct: 83 KAAKEMLSRVNNIVTA 98


>gi|16803799|ref|NP_465284.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e]
 gi|16411213|emb|CAC99837.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e]
          Length = 731

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 5  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 65 KAAREMKSRI 74


>gi|47095685|ref|ZP_00233292.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a
          F6854]
 gi|254900736|ref|ZP_05260660.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J0161]
 gi|254913779|ref|ZP_05263791.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818]
 gi|254938166|ref|ZP_05269863.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900]
 gi|47015970|gb|EAL06896.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a
          F6854]
 gi|258610779|gb|EEW23387.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900]
 gi|293591795|gb|EFG00130.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818]
          Length = 733

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 67 KAAREMKSRI 76


>gi|320451177|ref|YP_004203273.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01]
 gi|320151346|gb|ADW22724.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01]
          Length = 872

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL-EII----TAWSHL 92
           A+AG+GKTH LV  +L LL        +  +T T+ AA E+  R+  E+I     +W+  
Sbjct: 6   ASAGTGKTHALVGELLALLRQGVPLRRMAAVTFTRKAAEELRRRIQGEVIRLSSASWAEE 65

Query: 93  SD-EILSAEITKIQG 106
           +  E+  A  T I G
Sbjct: 66  AQREVYGAVFTTIHG 80


>gi|254832504|ref|ZP_05237159.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes 10403S]
          Length = 733

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 67 KAAREMKSRI 76


>gi|217964093|ref|YP_002349771.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23]
 gi|217333363|gb|ACK39157.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23]
          Length = 731

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 5  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 65 KAAREMKSRI 74


>gi|47092912|ref|ZP_00230694.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
          H7858]
 gi|254825996|ref|ZP_05230997.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          J1-194]
 gi|254932795|ref|ZP_05266154.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262]
 gi|255521959|ref|ZP_05389196.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          J1-175]
 gi|47018738|gb|EAL09489.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
          H7858]
 gi|293584348|gb|EFF96380.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262]
 gi|293595235|gb|EFG02996.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL
          J1-194]
 gi|328466511|gb|EGF37654.1| ATP-dependent DNA helicase [Listeria monocytogenes 1816]
          Length = 733

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +L+     EQ  A + T     + A AGSGKT +L  R+  L+     +P  +L +T T 
Sbjct: 7  ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 67 KAAREMKSRI 76


>gi|317407330|gb|EFV87300.1| DNA helicase II [Achromobacter xylosoxidans C54]
          Length = 762

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A V A AGSGKT +L  R+  L+    A P  LL +T T  AA EM  R+  I+
Sbjct: 18 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNKAAREMLARMSAIL 73


>gi|308049020|ref|YP_003912586.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM
          9799]
 gi|307631210|gb|ADN75512.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM
          9799]
          Length = 1218

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 9/61 (14%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPST---LLCLTHTKAAAAEMSHR 81
          T +  + A+AG+GKT+ +    LRL+L      A+ HP T   +L +T TKAA  E+  R
Sbjct: 13 TGTRLIEASAGTGKTYTIAALYLRLVLGHGGSAAHPHPLTPEQILVVTFTKAATEELKDR 72

Query: 82 V 82
          +
Sbjct: 73 I 73


>gi|55821019|ref|YP_139461.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737004|gb|AAV60646.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 775

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A S
Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAVALNPATS 86


>gi|326693832|ref|ZP_08230837.1| ATP-dependent DNA helicase PcrA [Leuconostoc argentinum KCTC
          3773]
          Length = 748

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
          +LI+    +Q  A   T+    + A AGSGKT +L  R+  L+   N  P  +L +T T 
Sbjct: 5  ELINGMNDKQAEAVQTTQGPLLIMAGAGSGKTRVLTHRIAHLVKDLNVMPWRILAITFTN 64

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 65 KAAKEMRERI 74


>gi|313200859|ref|YP_004039517.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312440175|gb|ADQ84281.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 665

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AGSGKT ++ Q++  L+      P  +  +T T  AA EM  RV  ++   S
Sbjct: 22 VLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNKAAREMQERVGHLLEGKS 77


>gi|293606186|ref|ZP_06688550.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC
          43553]
 gi|292815446|gb|EFF74563.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC
          43553]
          Length = 764

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A V A AGSGKT +L  R+  L+    A P  LL +T T  AA EM  R+  I+
Sbjct: 19 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNKAAREMLARMSAIL 74


>gi|288573981|ref|ZP_06392338.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569722|gb|EFC91279.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 1160

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 21/131 (16%)

Query: 36  VSANAGSGKTHILVQR-VLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AG+GKT  L  R V  +    A    +L LT T  AA EM+ R+  +         
Sbjct: 35  VSAGAGTGKTWTLAWRFVWAVATGRARAGEILTLTFTDKAATEMAERIRLL--------- 85

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ--FPLEAN 152
                    ++G  P   ++      L   LE+     + TIH+F   ++++    L+ +
Sbjct: 86  ---------MEGLLPKTKELPTVAAALREGLESLEDSYISTIHSFSSRVIRESGLSLDLD 136

Query: 153 ITSHFAIADEE 163
             S    A EE
Sbjct: 137 PASRVVSAPEE 147


>gi|225849851|ref|YP_002730085.1| putative UvrD/REP helicase [Persephonella marina EX-H1]
 gi|225645334|gb|ACO03520.1| putative UvrD/REP helicase [Persephonella marina EX-H1]
          Length = 1021

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 25/152 (16%)

Query: 38  ANAGSGKTHILVQRVL--RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           A+AG+GKT+ LV++++   ++    +   +   T T+ AA+E+  R+      ++ + ++
Sbjct: 8   ASAGTGKTYTLVEKIVDEYIIRKRINIDQVFVSTFTEKAASELKSRI------YARIKEK 61

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           I   +      K P++        LL +         + TIH+    I++  P ++ IT 
Sbjct: 62  IYENQ------KNPDQL------KLLFSNFRNVQHSYIGTIHSLLLRILKANPDKSGITE 109

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + D+ Q + L  E+       I L+ N E
Sbjct: 110 DIKVIDDLQQEALFFES-----FEIFLEKNRE 136


>gi|218289816|ref|ZP_03494016.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240107|gb|EED07292.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 705

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
          +  D++     EQ  A   T     V A AGSGKT +L +R+  L+  A      +L +T
Sbjct: 3  DVTDILRGLNPEQRDAVTTTSGPLLVVAGAGSGKTSVLTRRIAYLIAHAGVAVHEILAIT 62

Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEI 96
           T  AA EM  R+ ++I    H +D++
Sbjct: 63 FTNKAAREMKTRIRDLI---GHRADDL 86


>gi|218281364|ref|ZP_03487842.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989]
 gi|218217456|gb|EEC90994.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989]
          Length = 725

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L+ R++ L+      P+ +L +T T  AA EM  R+
Sbjct: 28 AGAGSGKTRVLMARIVYLVQDCGILPNRILAITFTNKAANEMKTRL 73


>gi|76787976|ref|YP_329845.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909]
 gi|77407064|ref|ZP_00784070.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B]
 gi|77413012|ref|ZP_00789214.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515]
 gi|76563033|gb|ABA45617.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909]
 gi|77160910|gb|EAO72019.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515]
 gi|77174333|gb|EAO77196.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B]
          Length = 759

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78


>gi|307718485|ref|YP_003874017.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM
          6192]
 gi|306532210|gb|ADN01744.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM
          6192]
          Length = 665

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT ++  R+  +L ++     +L LT T  AA EM  RV
Sbjct: 28 AGAGSGKTRVITYRIAYMLDSHIPQKAILALTFTNKAAREMWERV 72


>gi|190576381|ref|YP_001974226.1| DNA-dependent helicase II [Stenotrophomonas maltophilia K279a]
 gi|190014303|emb|CAQ47950.1| putative DNA helicase II [Stenotrophomonas maltophilia K279a]
          Length = 730

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++  + E +  S P     V A AGSGKT +L  R+  L      P+  +  +T
Sbjct: 4  SHLLDGLNPAQREAV--SAPPGHHLVLAGAGSGKTRVLTHRIAWLHEVEGVPTHGIFAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AA EM HR+
Sbjct: 62 FTNKAAGEMRHRI 74


>gi|183981382|ref|YP_001849673.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
 gi|183174708|gb|ACC39818.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
          Length = 1101

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66
          E +  + +   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L
Sbjct: 9  EIASALGIFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVL 67

Query: 67 CLTHTKAAAAEMSHRV 82
           LT T+ AA ++  RV
Sbjct: 68 GLTFTRKAAGQLLRRV 83


>gi|118618002|ref|YP_906334.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
 gi|118570112|gb|ABL04863.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
          Length = 1101

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66
          E +  + +   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L
Sbjct: 9  EIASALGIFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVL 67

Query: 67 CLTHTKAAAAEMSHRV 82
           LT T+ AA ++  RV
Sbjct: 68 GLTFTRKAAGQLLRRV 83


>gi|78356631|ref|YP_388080.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219036|gb|ABB38385.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 1067

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 34/177 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------------LLCLTHTKAAAAEMS 79
           + A+AGSGKT+ L    L  L A +  S+                +L +T T  AA EM 
Sbjct: 5   IKASAGSGKTYRLTGEFLDRLRAASEESSAACALAPAGAAYCWPEILAVTFTNKAATEMQ 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R++        L +  L    +      P     S AR  + T+L     L V+TI + 
Sbjct: 65  ERIIRT------LKERALGMGASGPAADWP----ASGARRWVNTMLRRYSSLNVRTIDSL 114

Query: 140 CEAIMQQFPLEANITSHF-AIADEEQ-----SKKLIEEAKKST--LASIMLDNNEEL 188
              +++   LE  +   F  + DEE+      ++++E+A+  +  L   ++D +E L
Sbjct: 115 LHMLVRLCALELGLPPDFEPVFDEEEIFTPLYERMLEQARSGSHQLRQQLVDASESL 171


>gi|312883349|ref|ZP_07743075.1| DNA helicase IV [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368965|gb|EFP96491.1| DNA helicase IV [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 685

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L+ RV  LL ++ A    LL L   + AA EM  R+ + I
Sbjct: 217 VLAGAGSGKTSVLIARVAYLLQSHLAQSEELLMLAFGRDAAQEMKQRLSDKI 268


>gi|307292736|ref|ZP_07572582.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
 gi|306880802|gb|EFN12018.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
          Length = 770

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT  L  R+  L+    A PS +L +T T  AA EM  RV  +I
Sbjct: 46 VLAGAGTGKTAALTARLAHLIATRRAWPSEILAVTFTNKAAREMRERVGRMI 97


>gi|258654033|ref|YP_003203189.1| exodeoxyribonuclease V subunit beta [Nakamurella multipartita DSM
          44233]
 gi|258557258|gb|ACV80200.1| exodeoxyribonuclease V, beta subunit [Nakamurella multipartita
          DSM 44233]
          Length = 1139

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          P  +  + A+AG+GKTH +   V R +    A P  LL +T  +AA+ E+  RV
Sbjct: 19 PRGTTLLEASAGTGKTHAIGDLVTRYIAEGVARPDQLLVITFGRAASQELRERV 72


>gi|152996458|ref|YP_001341293.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
 gi|150837382|gb|ABR71358.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
          Length = 759

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          D T  A V A AG+GKT  L+ R+  LL+    PS +      K+A  E S R+ + + +
Sbjct: 16 DLTSPAKVIAVAGAGKTTTLISRIEHLLVQGVDPSHIGVFMFNKSAQEEFSERLSKRLMS 75

Query: 89 WSHL 92
            H 
Sbjct: 76 AGHF 79


>gi|33592827|ref|NP_880471.1| DNA helicase II [Bordetella pertussis Tohama I]
 gi|33601161|ref|NP_888721.1| DNA helicase II [Bordetella bronchiseptica RB50]
 gi|33572475|emb|CAE42046.1| DNA helicase II [Bordetella pertussis Tohama I]
 gi|33575596|emb|CAE32674.1| DNA helicase II [Bordetella bronchiseptica RB50]
          Length = 766

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A V A AGSGKT +L  R+  L+    A P  LL +T T  AA EM  R+
Sbjct: 19 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNKAAREMLTRM 70


>gi|33596606|ref|NP_884249.1| DNA helicase II [Bordetella parapertussis 12822]
 gi|33573307|emb|CAE37290.1| DNA helicase II [Bordetella parapertussis]
          Length = 766

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A V A AGSGKT +L  R+  L+    A P  LL +T T  AA EM  R+
Sbjct: 19 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNKAAREMLTRM 70


>gi|86145658|ref|ZP_01063988.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222]
 gi|85836629|gb|EAQ54755.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222]
          Length = 1224

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 31/141 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA---------------HPST---LLCLTHTKAAAAE 77
           + A+AG+GKT  +    LRLLL +                 P T   +L +T T+AA AE
Sbjct: 28  IEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDLTEATRHHEPLTVDQILVVTFTEAATAE 87

Query: 78  MSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +  R+        I  A     D +++  +  I        D + A   L+         
Sbjct: 88  LRDRIRARIHDARIAFARGQSDDPVIAPLLQAI-------DDHAGAAKTLLNAERQMDEA 140

Query: 132 KVQTIHAFCEAIMQQFPLEAN 152
            V TIH FC+ ++ Q   E+ 
Sbjct: 141 AVYTIHGFCQRMLTQNAFESG 161


>gi|319745133|gb|EFV97457.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae ATCC
          13813]
          Length = 766

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A
Sbjct: 32 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 85


>gi|270158153|ref|ZP_06186810.1| ATP-dependent DNA helicase Rep [Legionella longbeachae D-4968]
 gi|289163586|ref|YP_003453724.1| ATP-dependent DNA helicase Rep [Legionella longbeachae NSW150]
 gi|269990178|gb|EEZ96432.1| ATP-dependent DNA helicase Rep [Legionella longbeachae D-4968]
 gi|288856759|emb|CBJ10570.1| ATP-dependent DNA helicase Rep [Legionella longbeachae NSW150]
          Length = 667

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  L+    + +  +C +T T  AA EM  RV  ++
Sbjct: 19 VLAGAGSGKTRVITQKIAYLINTCGYAANTVCAVTFTNKAANEMRARVAAVL 70


>gi|237666682|ref|ZP_04526667.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str.
          BoNT E BL5262]
 gi|237657881|gb|EEP55436.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str.
          BoNT E BL5262]
          Length = 757

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  ++   N  P  +L +T T  AA EM  RV  +I
Sbjct: 25 ILAGAGSGKTRVLTHRIAHMVEDLNIAPYNILAITFTNKAAKEMKDRVRALI 76


>gi|217970262|ref|YP_002355496.1| exodeoxyribonuclease V subunit beta [Thauera sp. MZ1T]
 gi|217507589|gb|ACK54600.1| exodeoxyribonuclease V, beta subunit [Thauera sp. MZ1T]
          Length = 1321

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 16/138 (11%)

Query: 30  PTR-SAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEM 78
           P R S  + A+AG+GKT  +    LRL+L +            P+ +L +T T+AA  E+
Sbjct: 11  PLRGSRLIEASAGTGKTWTIAALYLRLVLGHGDADTAFARPLLPAEILVMTFTRAATREL 70

Query: 79  SHRVLEII---TAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           S R+ E +    AW    D   + +  + +++   P+ +    A   L           V
Sbjct: 71  SERIRERLREAAAWFRNEDAGRAPDPLLDELRAAYPDAAARRNAAWRLAMAAAAMDDAAV 130

Query: 134 QTIHAFCEAIMQQFPLEA 151
            TI A+C+ ++++   ++
Sbjct: 131 FTIDAWCQRMLREHAFDS 148


>gi|148239844|ref|YP_001225231.1| exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803]
 gi|147848383|emb|CAK23934.1| Exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803]
          Length = 1229

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 22/152 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV------------ 82
           + A+AG+GKT  L   V+RL++        LL +T T+AAA E+  R+            
Sbjct: 26  LEASAGTGKTFALAHLVMRLVVERELKLDALLVVTFTEAAADELRDRIGKRLDGALQGLL 85

Query: 83  -LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAF 139
            LE       ++ + +  E     G+ P   KS  S     L  +        + TIH F
Sbjct: 86  CLEQGGDGEAMATDAVLQEWLAEHGRDPTGRKSKASLLLEALEALERA----DITTIHGF 141

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           C   +++  L++  +   ++ D+ Q+  L+EE
Sbjct: 142 CRRTLRRQALDSGRSMDLSVDDDPQT--LVEE 171


>gi|99081864|ref|YP_614018.1| ATP-dependent DNA helicase Rep [Ruegeria sp. TM1040]
 gi|99038144|gb|ABF64756.1| ATP-dependent DNA helicase, Rep family [Ruegeria sp. TM1040]
          Length = 814

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL  N A  + +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTTRIVHLLNTNKARTNEILAVTFTNKAAREMKDRV 95


>gi|315187021|gb|EFU20778.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 665

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT ++  R+  +L ++     +L LT T  AA EM  RV
Sbjct: 28 AGAGSGKTRVITYRIAYMLDSHIPQKAILALTFTNKAAREMWERV 72


>gi|319897816|ref|YP_004136013.1| DNA helicase and single-stranded DNA-dependent atpase
          [Haemophilus influenzae F3031]
 gi|317433322|emb|CBY81698.1| DNA helicase and single-stranded DNA-dependent ATPase
          [Haemophilus influenzae F3031]
          Length = 671

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|305679858|ref|ZP_07402668.1| HRDC domain protein [Corynebacterium matruchotii ATCC 14266]
 gi|305660478|gb|EFM49975.1| HRDC domain protein [Corynebacterium matruchotii ATCC 14266]
          Length = 693

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          I+L      +Q  A+ P     + A AG+GKT  +  R+  L+       + ++ +T TK
Sbjct: 2  INLGDLDADQQQAATAPRGPVAILAGAGTGKTRTITYRIAHLIDQGFVGGNRVMAVTFTK 61

Query: 73 AAAAEMSHRV 82
           AA EM+HR+
Sbjct: 62 RAAGEMAHRL 71


>gi|217978725|ref|YP_002362872.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2]
 gi|217504101|gb|ACK51510.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2]
          Length = 448

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN------EELKKAFYEILE 197
           + QF  EA    H  +   E+ +K I EA+ S LA I+ D+       E+L+ A + +  
Sbjct: 368 LAQFAAEAGGAGHDGVITRERHRKSIAEAE-SALARILSDSAPVEIVAEDLRAALFALER 426

Query: 198 ISNDEDIETLISDIISN 214
           +    D+E ++ DI S 
Sbjct: 427 LVGRVDVEDILGDIFSR 443


>gi|22537300|ref|NP_688151.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae
          2603V/R]
 gi|22534170|gb|AAN00024.1|AE014244_1 ATP-dependent DNA helicase PcrA [Streptococcus agalactiae
          2603V/R]
          Length = 759

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78


>gi|260581374|ref|ZP_05849189.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW]
 gi|260091969|gb|EEW75917.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW]
          Length = 676

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 21 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 73


>gi|218892722|ref|YP_002441591.1| putative helicase [Pseudomonas aeruginosa LESB58]
 gi|218772950|emb|CAW28762.1| probable helicase [Pseudomonas aeruginosa LESB58]
          Length = 530

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
          A + A AGSGK+  LV RV+ +L      P  L  ++ T A+ A++  ++L ++  W + 
Sbjct: 9  ARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCAQLREQLLRVLAHWQYP 68

Query: 93 SD 94
           D
Sbjct: 69 FD 70


>gi|218708696|ref|YP_002416317.1| exodeoxyribonuclease V subunit beta [Vibrio splendidus LGP32]
 gi|218321715|emb|CAV17669.1| Exodeoxyribonuclease V beta chain [Vibrio splendidus LGP32]
          Length = 1224

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 31/141 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA---------------HPST---LLCLTHTKAAAAE 77
           + A+AG+GKT  +    LRLLL +                 P T   +L +T T+AA AE
Sbjct: 28  IEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDLTEATRHHEPLTVDQILVVTFTEAATAE 87

Query: 78  MSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +  R+        I  A     D +++  +  I        D + A   L+         
Sbjct: 88  LRDRIRARIHDARIAFARGQSDDPVIAPLLQAI-------DDHAGAAKTLLNAERQMDEA 140

Query: 132 KVQTIHAFCEAIMQQFPLEAN 152
            V TIH FC+ ++ Q   E+ 
Sbjct: 141 AVYTIHGFCQRMLTQNAFESG 161


>gi|188574507|ref|YP_001911436.1| ATP-dependent DNA helicase Rep [Xanthomonas oryzae pv. oryzae
          PXO99A]
 gi|188518959|gb|ACD56904.1| ATP-dependent DNA helicase Rep [Xanthomonas oryzae pv. oryzae
          PXO99A]
          Length = 640

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 3  VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMGERVAKRIRG 56


>gi|329122565|ref|ZP_08251146.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116]
 gi|327473116|gb|EGF18542.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116]
          Length = 670

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|229845640|ref|ZP_04465765.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
 gi|229811440|gb|EEP47144.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
          Length = 670

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|227111642|ref|ZP_03825298.1| DNA helicase IV [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 685

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   L+    A P  +L L   + AA EM+ R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAAWLMHRQEATPDQILLLAFGRKAAEEMNDRIRE 263


>gi|212715429|ref|ZP_03323557.1| hypothetical protein BIFCAT_00324 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212661604|gb|EEB22179.1| hypothetical protein BIFCAT_00324 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 584

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83
          V A AG+GKT  ++  +  LL    A P  +L L+ TKA+A +MS R++
Sbjct: 43 VLAGAGTGKTTTIIGYIAWLLATKRAAPEEILVLSFTKASAGDMSQRIM 91


>gi|167772731|ref|ZP_02444784.1| hypothetical protein ANACOL_04113 [Anaerotruncus colihominis DSM
           17241]
 gi|167665209|gb|EDS09339.1| hypothetical protein ANACOL_04113 [Anaerotruncus colihominis DSM
           17241]
          Length = 899

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           R   V A  G+GKT  LV R+ RL+    A P  +  +T T  AAAE++ R+
Sbjct: 475 RQITVVAGPGTGKTRTLVYRIRRLIETGAAAPGQITAVTFTNKAAAELAGRL 526


>gi|145633860|ref|ZP_01789582.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
 gi|144985302|gb|EDJ92141.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
          Length = 670

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|295109226|emb|CBL23179.1| ATP-dependent DNA helicase PcrA [Ruminococcus obeum A2-162]
          Length = 744

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  I
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIAEKGINPWNILAITFTNKAAHEMRERVDRI 74


>gi|258623933|ref|ZP_05718886.1| helicase IV [Vibrio mimicus VM603]
 gi|258583727|gb|EEW08523.1| helicase IV [Vibrio mimicus VM603]
          Length = 687

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAERL 264


>gi|148827827|ref|YP_001292580.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG]
 gi|148719069|gb|ABR00197.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG]
          Length = 670

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|145639403|ref|ZP_01795008.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII]
 gi|145271450|gb|EDK11362.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII]
          Length = 671

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|116049351|ref|YP_791846.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584572|gb|ABJ10587.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 530

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
          A + A AGSGK+  LV RV+ +L      P  L  ++ T A+ A++  ++L ++  W + 
Sbjct: 9  ARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCAQLREQLLRVLAHWQYP 68

Query: 93 SD 94
           D
Sbjct: 69 FD 70


>gi|29829618|ref|NP_824252.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606726|dbj|BAC70787.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 1202

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 39  IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 98

Query: 76  AEMSHRV 82
            E++ RV
Sbjct: 99  GELAERV 105


>gi|466973|gb|AAA17159.1| uvrD [Mycobacterium leprae]
          Length = 457

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEM 78
           + E +LA  P     V A AG+GKT  +  R+  L+ A  H +T  +L +T T+ AAAEM
Sbjct: 29  QREAVLA--PRGPVCVLAGAGTGKTRTITHRIAHLVGAG-HVATGQVLAVTFTQRAAAEM 85

Query: 79  SHRVLEIITAWSHLSD 94
             R+  +  A   +SD
Sbjct: 86  RSRLRALGAAVQAVSD 101


>gi|308371270|ref|ZP_07424390.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308372459|ref|ZP_07428757.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308376024|ref|ZP_07445856.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007]
 gi|308378226|ref|ZP_07481952.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|308329221|gb|EFP18072.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308333053|gb|EFP21904.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308344515|gb|EFP33366.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007]
 gi|308353144|gb|EFP41995.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
          Length = 1144

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71
           + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L LT T
Sbjct: 62  LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 120

Query: 72  KAAAAEMSHRV 82
           + AA ++  RV
Sbjct: 121 RKAAGQLLRRV 131


>gi|308232374|ref|ZP_07415860.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308379444|ref|ZP_07486303.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308380606|ref|ZP_07490521.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|308214071|gb|EFO73470.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308356886|gb|EFP45737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308360886|gb|EFP49737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
          Length = 1144

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71
           + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L LT T
Sbjct: 62  LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 120

Query: 72  KAAAAEMSHRV 82
           + AA ++  RV
Sbjct: 121 RKAAGQLLRRV 131


>gi|306782246|ref|ZP_07420583.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002]
 gi|306794956|ref|ZP_07433258.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|306799158|ref|ZP_07437460.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006]
 gi|308325002|gb|EFP13853.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002]
 gi|308336739|gb|EFP25590.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|308340579|gb|EFP29430.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006]
          Length = 1101

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71
          + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L LT T
Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77

Query: 72 KAAAAEMSHRV 82
          + AA ++  RV
Sbjct: 78 RKAAGQLLRRV 88


>gi|298526678|ref|ZP_07014087.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|298496472|gb|EFI31766.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
          Length = 921

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71
          + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L LT T
Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77

Query: 72 KAAAAEMSHRV 82
          + AA ++  RV
Sbjct: 78 RKAAGQLLRRV 88


>gi|294993862|ref|ZP_06799553.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210]
 gi|326902572|gb|EGE49505.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148]
          Length = 1101

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71
          + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L LT T
Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77

Query: 72 KAAAAEMSHRV 82
          + AA ++  RV
Sbjct: 78 RKAAGQLLRRV 88


>gi|294637927|ref|ZP_06716196.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685]
 gi|291088953|gb|EFE21514.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685]
          Length = 700

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLE----- 84
           T    V A AGSGKT ++  ++  L+    +P+  +  +T T  AA EM  RV +     
Sbjct: 42  TGPCLVLAGAGSGKTRVITNKIAHLIRVCGYPARQIAAVTFTNKAAREMKERVAQTLGRK 101

Query: 85  -----IITAWSHLSDEILSAEITKIQGKKPNKS 112
                +I+ +  L  EI+  E  K    KPN S
Sbjct: 102 EARGLMISTFHTLGLEIIKREY-KALAMKPNFS 133


>gi|260202354|ref|ZP_05769845.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289444772|ref|ZP_06434516.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289417691|gb|EFD14931.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
          Length = 1101

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71
          + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L LT T
Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77

Query: 72 KAAAAEMSHRV 82
          + AA ++  RV
Sbjct: 78 RKAAGQLLRRV 88


>gi|218754981|ref|ZP_03533777.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
 gi|289763384|ref|ZP_06522762.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
 gi|289710890|gb|EFD74906.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
          Length = 1101

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71
          + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L LT T
Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77

Query: 72 KAAAAEMSHRV 82
          + AA ++  RV
Sbjct: 78 RKAAGQLLRRV 88


>gi|15610337|ref|NP_217717.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv]
 gi|15842787|ref|NP_337824.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551]
 gi|31794378|ref|NP_856871.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97]
 gi|121639086|ref|YP_979310.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|148663060|ref|YP_001284583.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148824397|ref|YP_001289151.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11]
 gi|215405207|ref|ZP_03417388.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987]
 gi|215432160|ref|ZP_03430079.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054]
 gi|224991578|ref|YP_002646267.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|253800237|ref|YP_003033238.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254365824|ref|ZP_04981869.1| hypothetical ATP-dependent DNA helicase [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254552298|ref|ZP_05142745.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260188244|ref|ZP_05765718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|260206546|ref|ZP_05774037.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289448884|ref|ZP_06438628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289555474|ref|ZP_06444684.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289575916|ref|ZP_06456143.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289747014|ref|ZP_06506392.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289755320|ref|ZP_06514698.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|297635848|ref|ZP_06953628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297732844|ref|ZP_06961962.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506]
 gi|307085954|ref|ZP_07495067.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012]
 gi|313660177|ref|ZP_07817057.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475]
 gi|2827611|emb|CAA16666.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis
          H37Rv]
 gi|13883113|gb|AAK47638.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551]
 gi|31619974|emb|CAD95318.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis
          AF2122/97]
 gi|121494734|emb|CAL73215.1| Probable ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|134151337|gb|EBA43382.1| hypothetical ATP-dependent DNA helicase [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148507212|gb|ABQ75021.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148722924|gb|ABR07549.1| hypothetical ATP-dependent DNA helicase [Mycobacterium
          tuberculosis F11]
 gi|224774693|dbj|BAH27499.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|253321740|gb|ACT26343.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|289421842|gb|EFD19043.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289440106|gb|EFD22599.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289540347|gb|EFD44925.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289687542|gb|EFD55030.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289695907|gb|EFD63336.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|308364573|gb|EFP53424.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012]
 gi|323718065|gb|EGB27247.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A]
 gi|328459972|gb|AEB05395.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
          Length = 1101

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71
          + L   T  +  + + P     V A AG+GKT  +  RV+  L+AN  A P  +L LT T
Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77

Query: 72 KAAAAEMSHRV 82
          + AA ++  RV
Sbjct: 78 RKAAGQLLRRV 88


>gi|25011258|ref|NP_735653.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae NEM316]
 gi|23095682|emb|CAD46868.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 759

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78


>gi|77412397|ref|ZP_00788706.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111]
 gi|77161557|gb|EAO72559.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111]
          Length = 759

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78


>gi|145642218|ref|ZP_01797785.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021]
 gi|145273078|gb|EDK12957.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 22.4-21]
          Length = 670

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|77409591|ref|ZP_00786269.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1]
 gi|77171802|gb|EAO74993.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1]
          Length = 759

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78


>gi|254168521|ref|ZP_04875365.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469]
 gi|197622576|gb|EDY35147.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469]
          Length = 927

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AG+GKT  L +R+L LLL    P+  ++  T T+ AA  M  RV   +T
Sbjct: 41 ILAGAGAGKTETLTRRILYLLLYKNVPAEEIVAFTFTEKAAQSMKSRVYNQVT 93


>gi|90424770|ref|YP_533140.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90106784|gb|ABD88821.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           BisB18]
          Length = 866

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L +  A P  +L +T T  AA EM  R+ +++
Sbjct: 56  VLAGAGTGKTRVLTSRIAHILSSGRARPGEILSVTFTNKAAREMKLRLGQML 107


>gi|309751752|gb|ADO81736.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2866]
          Length = 671

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|262403764|ref|ZP_06080322.1| DNA helicase IV [Vibrio sp. RC586]
 gi|262350268|gb|EEY99403.1| DNA helicase IV [Vibrio sp. RC586]
          Length = 687

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAQEMAERL 264


>gi|149187526|ref|ZP_01865823.1| UvrD/REP helicase [Vibrio shilonii AK1]
 gi|148838406|gb|EDL55346.1| UvrD/REP helicase [Vibrio shilonii AK1]
          Length = 690

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AG+GKT+ L  +  +LL+    P  +L +T  + A+AE++ R   I
Sbjct: 35 AGAGTGKTNTLAHKTAQLLVQGVPPEKILLVTFARRASAELASRANRI 82


>gi|145631680|ref|ZP_01787443.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021]
 gi|144982703|gb|EDJ90239.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021]
          Length = 671

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|15602924|ref|NP_245996.1| hypothetical protein PM1059 [Pasteurella multocida subsp.
          multocida str. Pm70]
 gi|12721395|gb|AAK03143.1| Rep [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 671

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEM 78
           K +Q      T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM
Sbjct: 4  NKQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAYLVAKCGYVPRQIAAVTFTNKAAREM 63

Query: 79 SHRV 82
            RV
Sbjct: 64 KERV 67


>gi|24371066|dbj|BAC22107.1| RecB [Bacteroides thetaiotaomicron]
          Length = 79

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL 83
          A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L
Sbjct: 9  ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERIL 55


>gi|68249227|ref|YP_248339.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP]
 gi|68057426|gb|AAX87679.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 86-028NP]
          Length = 670

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|16272592|ref|NP_438809.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20]
 gi|1172905|sp|P44804|REP_HAEIN RecName: Full=ATP-dependent DNA helicase rep
 gi|1573648|gb|AAC22309.1| ATP-dependent DNA helicase (rep) [Haemophilus influenzae Rd KW20]
          Length = 670

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|301169366|emb|CBW28966.1| DNA helicase and single-stranded DNA-dependent ATPase
          [Haemophilus influenzae 10810]
          Length = 670

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|262173932|ref|ZP_06041609.1| DNA helicase IV [Vibrio mimicus MB-451]
 gi|261891290|gb|EEY37277.1| DNA helicase IV [Vibrio mimicus MB-451]
          Length = 687

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAERL 264


>gi|190572176|ref|YP_001970021.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas
          maltophilia K279a]
 gi|190010098|emb|CAQ43706.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas
          maltophilia K279a]
          Length = 658

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++V+++  L+ +  +P+  +  +T T  +A EM  RV
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIGSGRYPARRIAAITFTNKSAKEMRERV 68


>gi|161789260|ref|YP_001595635.1| UvrD-like helicase IV [Vibrio sp. 23023]
 gi|161761385|gb|ABX77031.1| UvrD-like helicase IV [Vibrio sp. 23023]
          Length = 861

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII-------TAW 89
           A AG+GKT ++V R   L+ +  A  S +L L + + AA EM  R+ E +       + +
Sbjct: 113 AGAGTGKTSVMVGRTGYLVNSGQARSSDILMLAYGRVAAQEMDERIKEKLGFDDVKASTF 172

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L  +I+SA    ++GK P+ S            LE    +K + +H   E +M+    
Sbjct: 173 HSLGVKIISA----VEGKAPSLSK-----------LEDDPQVKSKWMHDEIETLMRDSRY 217

Query: 150 EANITSHFA 158
           +A +  +F+
Sbjct: 218 KAALLDYFS 226


>gi|58584885|ref|YP_198458.1| superfamily I DNA/RNA helicase [Wolbachia endosymbiont strain TRS
          of Brugia malayi]
 gi|58419201|gb|AAW71216.1| Superfamily I DNA and RNA helicase, UvrD [Wolbachia endosymbiont
          strain TRS of Brugia malayi]
          Length = 638

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          A AG+GKT  +  R+  ++    AH   +L +T T  AA EM  RVL++
Sbjct: 27 AGAGTGKTRTITSRIAHIIRNGYAHSDEILAVTFTNKAANEMVSRVLKL 75


>gi|309973857|gb|ADO97058.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2846]
          Length = 673

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67


>gi|295112231|emb|CBL28981.1| Superfamily I DNA and RNA helicases [Synergistetes bacterium
          SGP1]
          Length = 682

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  +V  L+    A P  +  +T T  AA EM  RV  ++
Sbjct: 29 AGAGSGKTRVLTHKVAWLIAEGLARPWEITAVTFTNKAAGEMRERVSALV 78


>gi|257093991|ref|YP_003167632.1| exodeoxyribonuclease V subunit beta [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046515|gb|ACV35703.1| exodeoxyribonuclease V, beta subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1239

 Score = 36.6 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 36  VSANAGSGKT-HILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL-EIITAWSHLS 93
           + A+AG+GKT ++    +  LL        +L +T T AA AE+  R+   I+   ++L 
Sbjct: 28  IEASAGTGKTWNLCGLYLRLLLEKGLDAPQILVVTFTNAATAELRERIRSRIVDVLAYLQ 87

Query: 94  DEILSAE--ITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
               +A+  +T++     N +  D  + R  L   L T     V TIH FC+  + + P 
Sbjct: 88  RGASAADPFVTRLVAAVENNASVDRPQMRMRLEAALHTFDEAAVFTIHGFCQRALSETPF 147

Query: 150 EANITSHFAIADEEQSKKL 168
            A +     +  ++Q  +L
Sbjct: 148 AAGLPFSLDLLHDDQPLRL 166


>gi|290580396|ref|YP_003484788.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254997295|dbj|BAH87896.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 758

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFINPWNILAITFTNKAACEMKERAFALNAA 78


>gi|1075208|pir||D64084 helicase (EC 3.6.1.-) rep - Haemophilus influenzae (strain Rd
          KW20)
          Length = 698

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 43 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 95


>gi|150388771|ref|YP_001318820.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens
          QYMF]
 gi|149948633|gb|ABR47161.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens
          QYMF]
          Length = 724

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L+      P  +L +T T  AA EM  R+ +++
Sbjct: 25 AGAGSGKTRVLTHRIAYLVEELGVSPYHILSITFTNKAAREMKERIHQLL 74


>gi|331694979|ref|YP_004331218.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949668|gb|AEA23365.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 682

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 13 TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLT 69
          T D +     EQL A + P     V A AG+GKT  + +R+   L+A  H  P  +L +T
Sbjct: 2  TADPLHDLDEEQLAAVTAPRGPVCVLAGAGTGKTRTITRRIAH-LVATGHVAPGQVLAVT 60

Query: 70 HTKAAAAEMSHRV 82
           T  AA E+  R+
Sbjct: 61 FTARAAGELRTRL 73


>gi|323694559|ref|ZP_08108725.1| UvrD/REP family ATP-dependent DNA helicase [Clostridium symbiosum
           WAL-14673]
 gi|323501327|gb|EGB17223.1| UvrD/REP family ATP-dependent DNA helicase [Clostridium symbiosum
           WAL-14673]
          Length = 1073

 Score = 36.6 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
           R+  V A  G+GKT  L  R+L LL      PS +  +T T  AAAE+  R+
Sbjct: 486 RAVSVKAGPGTGKTGTLTARILHLLKERGVKPSEITAVTFTNKAAAELRQRL 537


>gi|323359568|ref|YP_004225964.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
          StLB037]
 gi|323275939|dbj|BAJ76084.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
          StLB037]
          Length = 1095

 Score = 36.6 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
          T  +  +   P   A V A AGSGKT  +  RV+  L+AN       +L LT T+ AA E
Sbjct: 20 TPEQTAVIESPLAPALVVAGAGSGKTETMAGRVV-WLVANGIVRRDEVLGLTFTRKAAGE 78

Query: 78 MSHRV 82
          ++ R+
Sbjct: 79 LAERI 83


>gi|294084860|ref|YP_003551620.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664435|gb|ADE39536.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 914

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 3   YHNSFQEHSETIDLISQT-KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANA 60
           Y   ++ + +TI+    T K  Q +  D  R+  V A AG+GKT  +V +V  L+    A
Sbjct: 23  YRFRYKSYFDTIEKFPLTVKQRQSVIVDEKRNL-VIAGAGTGKTSTVVGKVGFLVKTKRA 81

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLE 84
            P+ +L + + + AA E+  R+ E
Sbjct: 82  KPNEILAIAYNRNAARELRERIKE 105


>gi|209525368|ref|ZP_03273909.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328]
 gi|209494219|gb|EDZ94533.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328]
          Length = 779

 Score = 36.6 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 12 ETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
          E++D ++   S Q  A +       V A AGSGKT  L  RV  L+  +  +P  +L +T
Sbjct: 2  ESVDFLTSLNSSQRQAVEHFCGPMLVVAGAGSGKTRALTYRVANLIDNHKVNPENILAVT 61

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AA E+ +R+  I
Sbjct: 62 FTNKAAREIKNRIESI 77


>gi|163801629|ref|ZP_02195527.1| helicase IV [Vibrio sp. AND4]
 gi|159174546|gb|EDP59348.1| helicase IV [Vibrio sp. AND4]
          Length = 689

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  R+++ +
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLIDKV 268


>gi|323487050|ref|ZP_08092359.1| UvrD/REP helicase [Clostridium symbiosum WAL-14163]
 gi|323399641|gb|EGA92030.1| UvrD/REP helicase [Clostridium symbiosum WAL-14163]
          Length = 1073

 Score = 36.6 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
           R+  V A  G+GKT  L  R+L LL      PS +  +T T  AAAE+  R+
Sbjct: 486 RAVSVKAGPGTGKTGTLTARILHLLKERGVKPSEITAVTFTNKAAAELRQRL 537


>gi|255326995|ref|ZP_05368071.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296212|gb|EET75553.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 1292

 Score = 36.6 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 41  GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM-------SHRVLEI--ITAWSH 91
           G+GKTH L +R LR L     P+ LL L  T+ AA  M       S R L +    AW+ 
Sbjct: 11  GTGKTHHLTERALRYLADGNDPARLLILAPTRTAATRMRDTIAASSDRSLSVAPTRAWAA 70

Query: 92  LSDEILSAEITK 103
            + ++L    T+
Sbjct: 71  YAFDLLKRAQTR 82


>gi|240139359|ref|YP_002963834.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
 gi|240009331|gb|ACS40557.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
          Length = 615

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRV 82
          RS  ++A AG+GKT IL Q+   LL     PS   +L ++  + AAA +  RV
Sbjct: 30 RSVAITAGAGAGKTEILAQKAAYLLQTGICPSPRRILAISFKRDAAATLGDRV 82


>gi|268592938|ref|ZP_06127159.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131]
 gi|291311730|gb|EFE52183.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131]
          Length = 674

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 18/120 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE---------- 84
           V A AGSGKT ++  ++  L+    + P  +  +T T  AA EM  RV +          
Sbjct: 20  VLAGAGSGKTRVITNKIAHLIRQCGYQPRQIAAVTFTNKAAREMKERVAQTLGKKEARGL 79

Query: 85  IITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETPGGLKVQTIHA 138
           II+ +  L  EI+  E  K  G K N      +  M+  + L   +LE    L  Q I A
Sbjct: 80  IISTFHTLGLEIIKREY-KALGIKANFSLFDDQDQMALLKELTFDLLEEDKDLLKQLISA 138


>gi|13476750|ref|NP_108319.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
 gi|14027511|dbj|BAB53780.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
          Length = 589

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
          SEQ LA D      ++A  GSGKT +++ ++ R + A    P    C+T+T  A  E+  
Sbjct: 5  SEQKLAVDCPDDLMLTACPGSGKTRVIISKLSRAVDAIRGTPRVAGCITYTNTAVHEIET 64

Query: 81 RVLEIITAWSHLSDE 95
          R+ +     S + DE
Sbjct: 65 RLRQ----HSQVGDE 75


>gi|257054747|ref|YP_003132579.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
          43017]
 gi|256584619|gb|ACU95752.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
          43017]
          Length = 1090

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCL 68
          +E + L   T  +  + + P   A V A AG+GKT  +  RV+  L+AN    P  +L L
Sbjct: 18 AEALGLPVPTPEQAAVVAAPPEPALVVAGAGAGKTETMAARVV-WLVANGLVTPDRVLGL 76

Query: 69 THTKAAAAEMS 79
          T T+ AA +++
Sbjct: 77 TFTRKAARQLA 87


>gi|166714219|ref|ZP_02245426.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 658

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMGERVAKRIRG 74


>gi|325262187|ref|ZP_08128925.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5]
 gi|324033641|gb|EGB94918.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5]
          Length = 741

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  RV  ++
Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDNLV 75


>gi|322384701|ref|ZP_08058369.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150400|gb|EFX43893.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 913

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           A AG+GKT +L  R   LL +    P  +L +T T  AAAEM  R+ ++
Sbjct: 73  AGAGTGKTSVLTCRAAYLLKVRQVDPRQILLVTFTSKAAAEMRERLADL 121


>gi|257068318|ref|YP_003154573.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM
          4810]
 gi|256559136|gb|ACU84983.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM
          4810]
          Length = 1094

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
          T  +  +   P     V A AGSGKT  +  RV+  L+AN    P  +L LT T+ AA E
Sbjct: 27 TAEQTAVIEAPLAPMLVVAGAGSGKTETMASRVV-WLIANGIVEPRQVLGLTFTRKAAHE 85

Query: 78 MSHRV 82
          +  R+
Sbjct: 86 LGERI 90


>gi|254517672|ref|ZP_05129728.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
 gi|226911421|gb|EEH96622.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
          Length = 749

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  ++      P  +L +T T  AA EM  RV  +I
Sbjct: 36 AGAGSGKTRVLTHRMAHMIDDLGILPYKILAITFTNKAAKEMKDRVKALI 85


>gi|254426856|ref|ZP_05040563.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881]
 gi|196193025|gb|EDX87984.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881]
          Length = 1198

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 15/159 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLE-I 85
           + A+AG+GKT  L    LRL+L +           P  +L +T T+AA  E+  R+ + +
Sbjct: 19  IEASAGTGKTFTLAALYLRLVLGHGDENGFSRPLLPPEILVVTFTEAATEELRERIRDRL 78

Query: 86  ITAWSHLSDEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             A    +D    A+   + ++        D ++    L    +      + TIH FC  
Sbjct: 79  ADAARIFADSNAEADDPVLAELLNDYSAPDDRARCAQRLEAAAQWMDEAAIYTIHGFCNR 138

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           +++Q   ++   S F++  +E +    + A +    +I+
Sbjct: 139 MLKQHAFDSG--SLFSLELQEDASDEQQMAARDYWRTII 175


>gi|317478934|ref|ZP_07938081.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
 gi|316904911|gb|EFV26718.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
          Length = 1099

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL-SD 94
           A+AGSGKT  L    ++ L+ N      +L +T T  A AEM  R+L ++   W    S 
Sbjct: 8   ASAGSGKTFTLAVEYIKHLIINPRAYRQILAVTFTNKATAEMKERILTQLYGIWKGAPSS 67

Query: 95  EILSAEIT--KIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           E     I   K++ K+     ++      +A   L  +L      +V+TI +F +++M+ 
Sbjct: 68  EAYLERIKNYKLKIKEEGGDGLTDGEIRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRN 127

Query: 147 FPLEANITSHFAI 159
              E  ++ +  I
Sbjct: 128 LARELELSPNLNI 140


>gi|302554000|ref|ZP_07306342.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
 gi|302471618|gb|EFL34711.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
          Length = 760

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           V A AG+GKT  +  R+   + A   HPS++L +T T  AA EM  R+ ++  A
Sbjct: 70  VLAGAGTGKTRAITHRIAYGVRAGILHPSSVLAVTFTNRAAGEMRGRLRQLGAA 123


>gi|288958808|ref|YP_003449149.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp.
           B510]
 gi|288911116|dbj|BAI72605.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp.
           B510]
          Length = 773

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AG+GKT +L  R+  LL+   A    +L +T T  AA EM  RV            
Sbjct: 49  VLAGAGTGKTRVLTTRLAHLLMTRRAAAFQILAVTFTNKAAREMRERV------------ 96

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               A +  I+                      P G  + T HA    I+++      + 
Sbjct: 97  ----AHLVGIE----------------------PEGWWLGTFHALAARILRRHAELVGLK 130

Query: 155 SHFAIADEEQSKKLIEE 171
           S+F I D +   +LI++
Sbjct: 131 SNFTILDTDDQVRLIKQ 147


>gi|262164920|ref|ZP_06032658.1| DNA helicase IV [Vibrio mimicus VM223]
 gi|262027300|gb|EEY45967.1| DNA helicase IV [Vibrio mimicus VM223]
          Length = 687

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAERL 264


>gi|260912802|ref|ZP_05919288.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
 gi|260633180|gb|EEX51345.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
          Length = 671

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          T    V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV + I
Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLVEKCGYLPRQIAAVTFTNKAAREMKERVAQSI 71


>gi|256827426|ref|YP_003151385.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
 gi|256583569|gb|ACU94703.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
          Length = 841

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 39/137 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT +L  R+  ++      P  +L +T T  AAAEM  R+  ++   +    
Sbjct: 25  VLAGAGSGKTRVLTYRIAHMIEDLGVAPWEILAITFTNKAAAEMRERLGALVGPAAR--- 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                              G+ V T H+ C  I++        T
Sbjct: 82  -----------------------------------GMWVSTFHSMCVRILRANAEVIGFT 106

Query: 155 SHFAIADEEQSKKLIEE 171
            +F I  ++ SK+LI++
Sbjct: 107 KNFTIYADDDSKRLIKD 123


>gi|123965572|ref|YP_001010653.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515]
 gi|123199938|gb|ABM71546.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515]
          Length = 802

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  ++  P  +L +T T  AA EM  R L++         
Sbjct: 29  VVAGAGSGKTKALTHRIANLIENHSVDPHNILAVTFTNKAAKEMKAR-LQV--------- 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQTIHAFCEAIMQ------Q 146
            +L+ E+   Q  +P  +     ++ L T +  E    L + T H+    +++      Q
Sbjct: 79  -LLAQELAFNQFGQPWATLKEFDQNQLRTNIDQERLKDLWIGTFHSLFSRLLRYDIEKYQ 137

Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171
            P     T  F+I DE  S+ L++E
Sbjct: 138 DPEGLRWTRQFSIYDETDSQTLVKE 162


>gi|104779936|ref|YP_606434.1| exonuclease V subunit beta [Pseudomonas entomophila L48]
 gi|95108923|emb|CAK13619.1| exonuclease V, beta subunit [Pseudomonas entomophila L48]
          Length = 1223

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV- 82
           S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+ 
Sbjct: 16  SQLIEASAGTGKTFTISALYLRLILGHGGEQGFARELLPPQILVVTFTDAATKELRERIR 75

Query: 83  LEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
             +  A     DE+  A+  + +++   P +     A  L I + +      V TIH +C
Sbjct: 76  TRLAEAARFFRDELDDADPLLHQLRDDYPQEHWPRCANRLEIAV-QWMDEAAVSTIHGWC 134

Query: 141 EAIMQQFPLEA 151
           + ++++   ++
Sbjct: 135 QRMLREHAFDS 145


>gi|86605998|ref|YP_474761.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab]
 gi|86554540|gb|ABC99498.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab]
          Length = 776

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 28/149 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS- 93
           V A AGSGKT  L  R+  L+      P  +L +T T  AA EM  R+ ++         
Sbjct: 22  VVAGAGSGKTRTLAYRIAHLIRHYRVDPEEILAVTFTNKAAREMKERIEQLFAEQEAQEQ 81

Query: 94  -----DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ--- 145
                +E+  A+ T+++         S   H  I        L + T H+    I++   
Sbjct: 82  FGIPLEELEPAQATRLK---------SAVYHRWIK------PLWIGTFHSLFAQILRLEI 126

Query: 146 ---QFPLEANITSHFAIADEEQSKKLIEE 171
              Q P     T +F+I DE  ++ L++E
Sbjct: 127 EKYQDPKGRKWTRNFSIFDESDAQSLVKE 155


>gi|84687310|ref|ZP_01015190.1| Putative uvrD/DNA Helicase II [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664743|gb|EAQ11227.1| Putative uvrD/DNA Helicase II [Rhodobacterales bacterium HTCC2654]
          Length = 794

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 38/135 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AG+GKT  L  R+  LL  + A P+ +L +T T  AA EM  RV              
Sbjct: 33  AGAGTGKTKALTARIAHLLNTHTARPNEILAVTFTNKAAREMKDRV-------------- 78

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                RHL   +   P    + T HA C  ++++      + S+
Sbjct: 79  --------------------GRHLGEAVEGMPW---LGTFHAICVKLLRRHAELVGLKSN 115

Query: 157 FAIADEEQSKKLIEE 171
           F I D +   +L+++
Sbjct: 116 FTILDTDDQIRLMKQ 130


>gi|296118828|ref|ZP_06837404.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM
          20306]
 gi|295968317|gb|EFG81566.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM
          20306]
          Length = 1087

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82
          V+A AG+GKT  +  RV+  L+AN +  P  +L LT T+ AA ++  R+
Sbjct: 38 VTAGAGAGKTETMASRVVS-LVANGYVRPEQVLGLTFTRKAAQQLEQRI 85


>gi|284992623|ref|YP_003411177.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065868|gb|ADB76806.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 1062

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          ++Q +   P     V A  G+GKT  +V+ V   +     P  +L LT ++ AAAE+  R
Sbjct: 30 TQQAVVDHPGGPLLVLAGPGTGKTTTIVEAVAARIDGGVDPEQILVLTFSRRAAAELRDR 89

Query: 82 V 82
          V
Sbjct: 90 V 90


>gi|228963385|ref|ZP_04124546.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228796279|gb|EEM43726.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 168

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+
Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79


>gi|228477150|ref|ZP_04061788.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126]
 gi|228251169|gb|EEK10340.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126]
          Length = 1217

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 19/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT ++V+R+L ++        L   T T  AA E+  R+ + +T        
Sbjct: 45  VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLT-------- 96

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                      ++  + +  + R  L   +   G   + T+ AF + ++ Q+     ++ 
Sbjct: 97  -----------EQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145

Query: 156 HFAIADEEQSKKLIE 170
            F I  +   + L++
Sbjct: 146 IFRIMTDPAEQTLMK 160


>gi|78779497|ref|YP_397609.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|78712996|gb|ABB50173.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus
           marinus str. MIT 9312]
          Length = 1208

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 32/138 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L           
Sbjct: 15  VEASAGTGKSFTLAHLVLRNVLEKKIKPDEILLLSFTKNTCSELRDKIL----------- 63

Query: 95  EILSAEITKIQGKKPNKSDMS---KARHLLI---------------TILETPGGLKVQTI 136
             L  +  K+  +  N+S +    K  +L                   +     L+V T 
Sbjct: 64  --LRFQDLKLYLQNHNESKIDNTLKDWYLKFKEKEKSKKKIISEIDNFVNEIYKLQVTTF 121

Query: 137 HAFCEAIMQQFPLEANIT 154
           H+FC  I+ ++ +E  +T
Sbjct: 122 HSFCNNIINEYSIEIGVT 139


>gi|261879280|ref|ZP_06005707.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334111|gb|EFA44897.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 1115

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD- 94
           A+AGSGKT  L    ++LL+        +L +T T  A  EM  R+L ++    + L D 
Sbjct: 13  ASAGSGKTFTLAVEYIKLLVQEPQNYRYILAVTFTNKATEEMKRRILGQLYGIANALPDS 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E     + K      +++   + +  L  IL      +V+TI +F + I+     E  +T
Sbjct: 73  ESYMDALHKAFPAMADRAIRERVKEALGLILHHYHEFRVETIDSFFQRILHNLSRELGLT 132

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++  +   +   ++  +A  + + +I  DN+  L      I E  NDE    +I  I
Sbjct: 133 ANLQVGLND--FEVESQAVDNIIDNIQQDNDPLLAWLMDFIKEKVNDEKNWNVIGPI 187


>gi|258623609|ref|ZP_05718602.1| helicase IV [Vibrio mimicus VM573]
 gi|258584097|gb|EEW08853.1| helicase IV [Vibrio mimicus VM573]
          Length = 549

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAERL 264


>gi|253583576|ref|ZP_04860774.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725]
 gi|251834148|gb|EES62711.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725]
          Length = 725

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT  +  R+  ++      P  +L +T T  AA EM  RV +++
Sbjct: 26 AGAGSGKTRTITYRIAHMIQELGISPYKILAVTFTNKAAKEMKERVEDLV 75


>gi|148554134|ref|YP_001261716.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1]
 gi|148499324|gb|ABQ67578.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1]
          Length = 892

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AG+GKT  L  R+  L+    A PS +L +T T  AA EM  RV
Sbjct: 166 VLAGAGTGKTAALTARLAHLVATRRAWPSEILAVTFTNKAAREMRERV 213


>gi|124506203|ref|XP_001351699.1| helicase, belonging to UvrD family, putative [Plasmodium falciparum
           3D7]
 gi|23504627|emb|CAD51506.1| helicase, belonging to UvrD family, putative [Plasmodium falciparum
           3D7]
          Length = 1441

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 17/130 (13%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A  GSGKT  L  R+++ ++      +++C+T T  AA+++  ++++ I     L D  +
Sbjct: 56  ACPGSGKTSTLTARIIKSIIE--EKQSIVCITFTNYAASDLKDKIMKKINC---LIDICV 110

Query: 98  SAEITKIQGKK---------PNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             +I +               NK  ++ K    +  +L T   + + TIH+FC  I+ ++
Sbjct: 111 DNKINQKLFNNKNNKINFSLKNKCTLNNKMNKSIFKVLNTV--MFIGTIHSFCRYILYKY 168

Query: 148 PLEANITSHF 157
                I + F
Sbjct: 169 KGTFKILTDF 178


>gi|297202230|ref|ZP_06919627.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148066|gb|EDY54287.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 35/154 (22%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV +    
Sbjct: 49  PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRK---- 104

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                  ++ A +T      P+                 PG   + T HAF   ++    
Sbjct: 105 ------ALVKAGVTDPDVIDPDNP---------------PGEPVISTYHAFAGRLL---- 139

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                T H      E + +L+ +A +  LA+ +L
Sbjct: 140 -----TDHGLRIGLEPTSRLLADATRYQLAARVL 168


>gi|254468181|ref|ZP_05081587.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13]
 gi|207086991|gb|EDZ64274.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13]
          Length = 715

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 39/130 (30%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           SA + A AGSGKT +L  R+  L+      P+ +L +T T  AA EM  R+         
Sbjct: 23  SALILAGAGSGKTKVLTSRISWLIHNQIVSPNGILAVTFTNKAANEMLSRI--------- 73

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                                         + +   P G+ V T H  C   ++    EA
Sbjct: 74  -----------------------------SLQLGMNPRGMWVGTFHGLCNRFLRLHYKEA 104

Query: 152 NITSHFAIAD 161
           ++   F I D
Sbjct: 105 SLPQTFQILD 114


>gi|308177918|ref|YP_003917324.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
          Re117]
 gi|307745381|emb|CBT76353.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
          Re117]
          Length = 707

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
          ++   +DL++   +EQ  A++       + A AG+GKT  +  R+   +    + P+++L
Sbjct: 5  DNPPAVDLLAGLDAEQRQAAETLSGPLCILAGAGTGKTRAITHRIAHGVHTGIYNPTSVL 64

Query: 67 CLTHTKAAAAEMSHRVLEI 85
           LT T  AAAEM  R+ ++
Sbjct: 65 ALTFTTRAAAEMRTRLRQL 83


>gi|304440549|ref|ZP_07400436.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC
          BAA-1640]
 gi|304371027|gb|EFM24646.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC
          BAA-1640]
          Length = 729

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ +++  L+     +PS +L +T T  AA EM  RV  +I
Sbjct: 24 VLAGAGSGKTSVVTKKIAYLMEEKKVYPSKILAITFTNKAANEMKTRVERLI 75


>gi|293391274|ref|ZP_06635608.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951808|gb|EFE01927.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 671

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE---------- 84
           V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV +          
Sbjct: 20  VLAGAGSGKTRVIINKIAHLIDKCGYFPKQIAAVTFTNKAAREMKERVAQSIGKAQSKGL 79

Query: 85  IITAWSHLSDEILSAEITKIQGKKPN 110
           I++ +  L  +I+  E  ++ G K N
Sbjct: 80  IVSTFHTLGFDIIKGEYKQL-GFKAN 104


>gi|262203378|ref|YP_003274586.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
 gi|262086725|gb|ACY22693.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
          Length = 1119

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCL 68
          +  + L + T  +  +   P     V A AG+GKT  +  RV+  L+AN    P  +L L
Sbjct: 8  AAALGLPTPTAEQAAVIEGPIEPMLVVAGAGAGKTETMAARVV-WLVANQLIGPDEILGL 66

Query: 69 THTKAAAAEMSHRV 82
          T T+ AA+E+  R+
Sbjct: 67 TFTRKAASELGARI 80


>gi|227485018|ref|ZP_03915334.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC
          51172]
 gi|227237015|gb|EEI87030.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC
          51172]
          Length = 731

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHT 71
           +D ++  + E +L  D      V A AGSGKT +L   +  ++   +  P  ++ +T T
Sbjct: 2  NLDRLNDRQKEAVLHKDG--PLLVLAGAGSGKTSVLTSSIAYKIKEESVDPRNIIAITFT 59

Query: 72 KAAAAEMSHRV 82
            AA EM  RV
Sbjct: 60 NKAANEMKERV 70


>gi|225351572|ref|ZP_03742595.1| hypothetical protein BIFPSEUDO_03169 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225157916|gb|EEG71199.1| hypothetical protein BIFPSEUDO_03169 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 580

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84
          V A AG+GKT  +V  +  LL    A P  +L L+ TKA+A EMS R+ +
Sbjct: 39 VLAGAGTGKTTTIVGYIAWLLNTGTATPEEILVLSFTKASADEMSSRITQ 88


>gi|315633354|ref|ZP_07888645.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393]
 gi|315477854|gb|EFU68595.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393]
          Length = 673

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV + I
Sbjct: 22 VLAGAGSGKTRVIINKIAHLIGKCGYLPKQIAAVTFTNKAAREMKERVAQSI 73


>gi|238755779|ref|ZP_04617111.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473]
 gi|238706006|gb|EEP98391.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473]
          Length = 672

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          T    V A AGSGKT ++  ++  L+    + PS +  +T T  AA EM  RV + +
Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRQCGYKPSHIAAVTFTNKAAREMKERVAQTL 71


>gi|159901725|ref|YP_001547971.1| superfamily I DNA/RNA helicase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894764|gb|ABX07843.1| Superfamily I DNA and RNA helicase-like [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 722

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLC 67
           D+++  + EQ  L+ S PT + +++ +AGSGKT IL  R+  L  ++      +P+  +C
Sbjct: 172 DIVATIQPEQHRLIQSSPTTTLFINGSAGSGKTAILHHRMAYLFFSDDEREGLNPAACIC 231

Query: 68  LTHTK 72
            + ++
Sbjct: 232 FSSSR 236


>gi|58579865|ref|YP_198881.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84621878|ref|YP_449250.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|58424459|gb|AAW73496.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84365818|dbj|BAE66976.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
          311018]
          Length = 658

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMGERVAKRIRG 74


>gi|325916135|ref|ZP_08178422.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC
          35937]
 gi|325537679|gb|EGD09388.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC
          35937]
          Length = 658

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIATGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74


>gi|297626188|ref|YP_003687951.1| DNA helicase [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
 gi|296921953|emb|CBL56513.1| DNA helicase [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
          Length = 718

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79
          K ++ +A D      V A AG+GKT  +  R+   +L+ A  P ++L +T T  AA EM 
Sbjct: 28 KDQRAVAVDVAGPLAVLAGAGTGKTRAITHRIAHAVLSGAQAPDSILAVTFTTRAAGEMR 87

Query: 80 HRV 82
           R+
Sbjct: 88 ARL 90


>gi|160888166|ref|ZP_02069169.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492]
 gi|156862301|gb|EDO55732.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492]
          Length = 1099

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL-SD 94
           A+AGSGKT  L    ++ L+ N      +L +T T  A AEM  R+L ++   W    S 
Sbjct: 8   ASAGSGKTFTLAVEYIKHLIINPRAYRQILAVTFTNKATAEMKERILTQLYGIWKGAPSS 67

Query: 95  EILSAEIT--KIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           E     I   K++ K+     ++      +A   L  +L      +V+TI +F +++M+ 
Sbjct: 68  EAYLERIKNYKLKIKEEGGDGLTDGEIRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRN 127

Query: 147 FPLEANITSHFAI 159
              E  ++ +  I
Sbjct: 128 LARELELSPNLNI 140


>gi|325108966|ref|YP_004270034.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305]
 gi|324969234|gb|ADY60012.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305]
          Length = 665

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT ++  R+  L+        +L +T T  AA EM+ R+  I+
Sbjct: 27 VLAGAGTGKTRVITTRMALLIGTGTQADRILSVTFTNKAAKEMAQRLQAIL 77


>gi|92115316|ref|YP_575244.1| ATP-dependent DNA helicase Rep [Chromohalobacter salexigens DSM
           3043]
 gi|91798406|gb|ABE60545.1| ATP-dependent DNA helicase Rep [Chromohalobacter salexigens DSM
           3043]
          Length = 682

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 17/151 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT ++  ++  L+         +  +T T  AA EM  RV E+         
Sbjct: 31  VLAGAGSGKTSVITTKIAYLIQECGMSARKIAAVTFTNKAAREMKERVGEMLQGREGHGL 90

Query: 86  -ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEA 142
            ++ +  L   I+  E+ K  G KP  S  D   A+ LL  +++       + I+A    
Sbjct: 91  TVSTFHTLGLNIIRGEL-KTLGYKPGFSLFDPEDAKALLRDLMQKEADTDAEQINAVQGQ 149

Query: 143 IMQ---QFPLEANITSHFAIADEEQSKKLIE 170
           I Q      L     SH A  D + + ++ E
Sbjct: 150 ISQWKNDLVLPGQAISHAADEDTQYAARVYE 180


>gi|56551470|ref|YP_162309.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543044|gb|AAV89198.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 768

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AG+GKT  L  R+  L+    A PS +L +T T  AA EM  RV +++ +
Sbjct: 40 VLAGAGTGKTAALTARLAYLVETLKAWPSQILAVTFTNKAAREMQMRVGDLLGS 93


>gi|84388923|ref|ZP_00991131.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio splendidus 12B01]
 gi|84376987|gb|EAP93859.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio splendidus 12B01]
          Length = 1224

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 31/141 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA---------------HPST---LLCLTHTKAAAAE 77
           + A+AG+GKT  +    LRLLL +                 P T   +L +T T+AA AE
Sbjct: 28  IEASAGTGKTFTIAGLYLRLLLGHGTTAPQGELTEATRHHEPLTVDQILVVTFTEAATAE 87

Query: 78  MSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +  R+        I  A     D +++  +  I        D + A   L+         
Sbjct: 88  LRDRIRARIHDARIAFARGQSDDPVIAPLLQAI-------DDHTGAVKTLLNAERQMDEA 140

Query: 132 KVQTIHAFCEAIMQQFPLEAN 152
            V TIH FC+ ++ Q   E+ 
Sbjct: 141 AVYTIHGFCQRMLTQNAFESG 161


>gi|325125238|gb|ADY84568.1| ATP-dependent helicase [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
          Length = 753

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  R ++++
Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78


>gi|312963039|ref|ZP_07777525.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6]
 gi|311282808|gb|EFQ61403.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6]
          Length = 1224

 Score = 36.6 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 14/132 (10%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRV 82
           S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  R+
Sbjct: 15  SQLIEASAGTGKTFTISALYLRLVLGHGGEVSGFGRELLPPQILVVTFTDAATKELRERI 74

Query: 83  -LEIITAWSHLSDEI--LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            + +  A     DEI    A I  ++ + P +   + A  L I   +      V TIH++
Sbjct: 75  RIRLAEAARFFRDEIDQPDALIADLREEYPAEQWPACANRLDIAA-QWMDEAAVSTIHSW 133

Query: 140 CEAIMQQFPLEA 151
           C+ ++++   ++
Sbjct: 134 CQRMLREHAFDS 145


>gi|241761119|ref|ZP_04759208.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374738|gb|EER64199.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 768

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AG+GKT  L  R+  L+    A PS +L +T T  AA EM  RV +++ +
Sbjct: 40 VLAGAGTGKTAALTARLAYLVETLKAWPSQILAVTFTNKAAREMQMRVGDLLGS 93


>gi|260752918|ref|YP_003225811.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552281|gb|ACV75227.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 768

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AG+GKT  L  R+  L+    A PS +L +T T  AA EM  RV +++ +
Sbjct: 40 VLAGAGTGKTAALTARLAYLVETLKAWPSQILAVTFTNKAAREMQMRVGDLLGS 93


>gi|194363828|ref|YP_002026438.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
          R551-3]
 gi|194346632|gb|ACF49755.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
          R551-3]
          Length = 658

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIGCGRYPARRIAAITFTNKSAKEMRERV 68


>gi|114319965|ref|YP_741648.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226359|gb|ABI56158.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 1242

 Score = 36.6 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 24/166 (14%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVL 83
           S  + A+AG+GKT  +    LRL+L +           P  +L +T T+AA  E+  R+ 
Sbjct: 19  SRLIEASAGTGKTFTIAALYLRLVLGHGEQRAGGGPLVPPQILVVTFTEAATRELRDRIR 78

Query: 84  EIITAWS--------HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           E ++  +        +  D +L A   + +  +  +  M++   L    ++      V T
Sbjct: 79  ERLSQAAAAFRDPARYPDDPVLPA--LRAEYDEHERPAMARRLELAAEWMDESA---VST 133

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           IH++C  ++++   ++   S F    E     L+ EA +    S +
Sbjct: 134 IHSWCYRMLREHAFDSG--SLFTQDLEADQTALLAEAVRDYWRSFL 177


>gi|254229814|ref|ZP_04923220.1| helicase IV [Vibrio sp. Ex25]
 gi|262395620|ref|YP_003287473.1| DNA helicase IV [Vibrio sp. Ex25]
 gi|151937650|gb|EDN56502.1| helicase IV [Vibrio sp. Ex25]
 gi|262339214|gb|ACY53008.1| DNA helicase IV [Vibrio sp. Ex25]
          Length = 689

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  R+++ +
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAATEMKERLVDKV 268


>gi|325684643|gb|EGD26798.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
          lactis DSM 20072]
          Length = 753

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  R ++++
Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78


>gi|159030780|emb|CAO88458.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 773

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT  L  R+  L+  +   P  +L +T T  AA EM  R+
Sbjct: 28 VVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTFTNKAAREMKTRI 75


>gi|325687804|gb|EGD29824.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK72]
          Length = 762

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|254669882|emb|CBA04366.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           alpha153]
          Length = 1204

 Score = 36.6 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|254285740|ref|ZP_04960703.1| helicase IV [Vibrio cholerae AM-19226]
 gi|150424237|gb|EDN16175.1| helicase IV [Vibrio cholerae AM-19226]
          Length = 699

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276


>gi|300813139|ref|ZP_07093516.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|300495893|gb|EFK31038.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
          Length = 753

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  R ++++
Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78


>gi|282858205|ref|ZP_06267396.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
          [Pyramidobacter piscolens W5455]
 gi|282583957|gb|EFB89334.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
          [Pyramidobacter piscolens W5455]
          Length = 558

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          V A AG+GKT  L  R +  +L       +L LT T+ AA+EM  R+  ++ 
Sbjct: 44 VGAGAGTGKTWTLAWRFVWTVLTREDVRHMLTLTFTEKAASEMRRRIAALLA 95


>gi|241761575|ref|ZP_04759662.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373883|gb|EER63416.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 1047

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
           V A  GSGKT +L QR+  L+   A P+   L LT T+ A  E+  RV +++
Sbjct: 496 VLAGPGSGKTKMLTQRIAHLIQKKAIPAEKCLLLTFTRRATDELKARVKQLL 547


>gi|91227913|ref|ZP_01262052.1| helicase IV [Vibrio alginolyticus 12G01]
 gi|91188322|gb|EAS74619.1| helicase IV [Vibrio alginolyticus 12G01]
          Length = 689

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  R+++ +
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAATEMKERLVDKV 268


>gi|54308421|ref|YP_129441.1| DNA helicase IV [Photobacterium profundum SS9]
 gi|46912849|emb|CAG19639.1| hypothetical helicase IV [Photobacterium profundum SS9]
          Length = 694

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 18/104 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRV-LEI-----IT 87
           V A AG+GKT +LV R    L+AN  A P  +L L   + AA EM  R+ L++     + 
Sbjct: 214 VLAGAGTGKTSVLVARA-GYLVANQAAQPEEILMLAFGRNAAEEMRERLALKVNNRIKVA 272

Query: 88  AWSHLSDEILSAEITKIQGKKPNKS-----DMSKARHLLITILE 126
            +  L  +I    I  ++ ++PN S     D +KA+ +  T+ E
Sbjct: 273 TFHALGTQI----IQSVENERPNVSPLALDDKAKAQWITSTLKE 312


>gi|313123176|ref|YP_004033435.1| ATP-dependent DNA helicase pcra [Lactobacillus delbrueckii subsp.
          bulgaricus ND02]
 gi|312279739|gb|ADQ60458.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
          bulgaricus ND02]
          Length = 753

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  R ++++
Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78


>gi|296132369|ref|YP_003639616.1| ATP-dependent DNA helicase PcrA [Thermincola sp. JR]
 gi|296030947|gb|ADG81715.1| ATP-dependent DNA helicase PcrA [Thermincola potens JR]
          Length = 741

 Score = 36.6 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  RV
Sbjct: 23 ILAGAGSGKTRVLTYRIAHLIHRKGVSPRNILAITFTNKAAQEMKERV 70


>gi|254523343|ref|ZP_05135398.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14]
 gi|219720934|gb|EED39459.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14]
          Length = 658

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIGCGRYPARRIAAITFTNKSAKEMRERV 68


>gi|219872059|ref|YP_002476434.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165]
 gi|219692263|gb|ACL33486.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165]
          Length = 673

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVIINKIAHLIARCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|167855646|ref|ZP_02478404.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755]
 gi|167853218|gb|EDS24474.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755]
          Length = 673

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVIINKIAHLIARCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|117928982|ref|YP_873533.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
 gi|117649445|gb|ABK53547.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
          Length = 1164

 Score = 36.6 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           V A AGSGKT  +  RV+  L+AN    P  +L LT T+ AA E++ R+   +T
Sbjct: 48  VLAGAGSGKTETMAGRVV-YLVANGIVRPEQVLGLTFTRRAATELAGRIRRRLT 100


>gi|315452622|ref|YP_004072892.1| DNA helicase II (UvrD) [Helicobacter felis ATCC 49179]
 gi|315131674|emb|CBY82302.1| DNA helicase II (UvrD) [Helicobacter felis ATCC 49179]
          Length = 626

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 28 SDPTRSAW--------VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
          ++P R A         + A AGSGKT  L  R+  L+ +    P   L LT T  AA EM
Sbjct: 10 NEPQREACMHVKGPLLILAGAGSGKTKTLTTRLAYLIASKGVPPQNTLTLTFTNKAAKEM 69

Query: 79 SHRVLEIITAWSH 91
            R  +++    H
Sbjct: 70 QERAGQLLRLCGH 82


>gi|302878146|ref|YP_003846710.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302580935|gb|ADL54946.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 565

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
          Q   +Q  A +      V A  GSGKT +L  R  RLL  N     L  +T T+ AAAE+
Sbjct: 2  QLNQQQARAVNALGHCSVLACPGSGKTRVLSMRAARLLSEN-KTGRLCAVTFTRDAAAEL 60

Query: 79 SHRVLEI 85
            R+L +
Sbjct: 61 KSRILHL 67


>gi|241759897|ref|ZP_04757997.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114]
 gi|241319905|gb|EER56301.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114]
          Length = 561

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 39/186 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 20  IEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLN 79

Query: 88  AWSHLSDEI------LSAEITKIQGKKPN------------KSDMSKARHLLITILETP- 128
               L  E       L+    K + K P+            + D  ++ H LI  L+   
Sbjct: 80  EIQTLGGEPEHISDGLNTYYDK-EKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAAL 138

Query: 129 ---GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--------AKKSTL 177
                  + TIH FC+ +++ +           ++D+ + + LI          A  +TL
Sbjct: 139 SQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTL 198

Query: 178 ASIMLD 183
           A ++ D
Sbjct: 199 AQLVFD 204


>gi|153833304|ref|ZP_01985971.1| helicase IV [Vibrio harveyi HY01]
 gi|148870440|gb|EDL69361.1| helicase IV [Vibrio harveyi HY01]
          Length = 689

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  R+++ +
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268


>gi|119867477|ref|YP_937429.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|119693566|gb|ABL90639.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. KMS]
          Length = 707

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
          + + + E +LA  P     V A AG+GKT  + +R+  L+ A    P  +L +T T  AA
Sbjct: 20 LDEEQREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSRAA 77

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 78 GEMRARL 84


>gi|50120689|ref|YP_049856.1| DNA helicase IV [Pectobacterium atrosepticum SCRI1043]
 gi|49611215|emb|CAG74661.1| helicase IV [Pectobacterium atrosepticum SCRI1043]
          Length = 685

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   L+    A P  +L L   + AA EM+ R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAAWLMHRQEATPDQILLLAFGRKAAEEMNERIHE 263


>gi|325131981|gb|EGC54680.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M6190]
 gi|325137812|gb|EGC60387.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           ES14902]
          Length = 1204

 Score = 36.6 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|269961143|ref|ZP_06175511.1| helicase IV [Vibrio harveyi 1DA3]
 gi|269834094|gb|EEZ88185.1| helicase IV [Vibrio harveyi 1DA3]
          Length = 689

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  R+++ +
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268


>gi|167465630|ref|ZP_02330719.1| UvrD/REP helicase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 316

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           A AG+GKT +L  R   LL +    P  +L +T T  AAAEM  R+ ++
Sbjct: 73  AGAGTGKTSVLTCRAAYLLKVRQVDPRQILLVTFTSKAAAEMRERLADL 121


>gi|121634579|ref|YP_974824.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           FAM18]
 gi|20271140|gb|AAM18525.1|AF495855_1 RecB [Neisseria meningitidis]
 gi|120866285|emb|CAM10026.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           FAM18]
          Length = 1204

 Score = 36.6 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D+ LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|118387235|ref|XP_001026729.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89308496|gb|EAS06484.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1021

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 3  YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
          Y N F E  E   L    +  +++ S+  +   + A AGSGKT  LV R+  L+     P
Sbjct: 13 YKNKFGEDCE---LRPSEEQLKIITSELRQDQKIIACAGSGKTTTLVARLKYLIDHGVSP 69

Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +++  T    A   +  R +E+I   S
Sbjct: 70 ESIIISTFNVEAGRNIQSRAMELIGEQS 97


>gi|116513593|ref|YP_812499.1| superfamily I DNA/RNA helicase [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|116092908|gb|ABJ58061.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
          Length = 753

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  R ++++
Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78


>gi|295093819|emb|CBK82910.1| Superfamily I DNA and RNA helicases [Coprococcus sp. ART55/1]
          Length = 782

 Score = 36.6 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT ++  RV  L+     +P  +L +T T  AA EM  RV  I+
Sbjct: 21 ILAGAGSGKTRVITHRVAYLMEHEGVNPLNILAITFTNKAAREMRERVDLIV 72


>gi|153838730|ref|ZP_01991397.1| helicase IV [Vibrio parahaemolyticus AQ3810]
 gi|260901447|ref|ZP_05909842.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus AQ4037]
 gi|149747855|gb|EDM58735.1| helicase IV [Vibrio parahaemolyticus AQ3810]
 gi|308108532|gb|EFO46072.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 689

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  R+++ +
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268


>gi|187923606|ref|YP_001895248.1| exodeoxyribonuclease V subunit beta [Burkholderia phytofirmans
           PsJN]
 gi|187714800|gb|ACD16024.1| exodeoxyribonuclease V, beta subunit [Burkholderia phytofirmans
           PsJN]
          Length = 1232

 Score = 36.6 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   L  +     
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELDRAID 87

Query: 92  LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           + D+     I ++      P +      A  ++   L T     + TIHAFC+  +Q+
Sbjct: 88  MDDDGGDPFIRRLFETTLAPERGIAREDALKVVRRALRTFDQAAIHTIHAFCQRALQE 145


>gi|108798380|ref|YP_638577.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|108768799|gb|ABG07521.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. MCS]
          Length = 714

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
          + + + E +LA  P     V A AG+GKT  + +R+  L+ A    P  +L +T T  AA
Sbjct: 27 LDEEQREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSRAA 84

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 85 GEMRARL 91


>gi|104773602|ref|YP_618582.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC 11842]
 gi|103422683|emb|CAI97296.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC 11842]
          Length = 753

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  R ++++
Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78


>gi|328470471|gb|EGF41382.1| DNA helicase IV [Vibrio parahaemolyticus 10329]
          Length = 689

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  R+++ +
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268


>gi|307709461|ref|ZP_07645918.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564]
 gi|307619775|gb|EFN98894.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564]
          Length = 763

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|259502570|ref|ZP_05745472.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041]
 gi|259169460|gb|EEW53955.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041]
          Length = 752

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT +L  RV  L+      P  +L +T T  AA EM  RV ++         
Sbjct: 18  VMAGAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEMQERVGKLLGEGAQDIW 77

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLL 121
           ++ +  L   IL  +I K+   +    +D S+ R L+
Sbjct: 78  VSTFHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLM 114


>gi|212703125|ref|ZP_03311253.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC
          29098]
 gi|212673391|gb|EEB33874.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC
          29098]
          Length = 963

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
          T+ +Q + +       V A  G+GKT  LV+R++ L+      P  LL  T T+ AA E+
Sbjct: 6  TQQQQAVINHDEGPVLVIAGPGAGKTFTLVERIVHLVAHKGIQPEQLLVATFTEKAANEL 65

Query: 79 SHRV 82
          + R+
Sbjct: 66 TSRI 69


>gi|13638521|sp|P53528|UVRD_MYCLE RecName: Full=Probable DNA helicase II homolog
          Length = 714

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEM 78
          + E +LA  P     V A AG+GKT  +  R+  L+ A  H +T  +L +T T+ AAAEM
Sbjct: 16 QREAVLA--PRGPVCVLAGAGTGKTRTITHRIAHLVGAG-HVATGQVLAVTFTQRAAAEM 72

Query: 79 SHRVLEIITAWSHLSD 94
            R+  +  A   +SD
Sbjct: 73 RSRLRALGAAVQAVSD 88


>gi|312870522|ref|ZP_07730641.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3]
 gi|311093984|gb|EFQ52309.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3]
          Length = 762

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85
           V A AGSGKT +L  RV  L+      P  +L +T T  AA EM  RV ++         
Sbjct: 28  VMAGAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEMQERVGKLLGEGAQDIW 87

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLL 121
           ++ +  L   IL  +I K+   +    +D S+ R L+
Sbjct: 88  VSTFHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLM 124


>gi|311103603|ref|YP_003976456.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8]
 gi|310758292|gb|ADP13741.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8]
          Length = 677

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  LL    +    ++ LT T  AA EM  RV  ++
Sbjct: 18 VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMDERVKTLV 69


>gi|260435507|ref|ZP_05789477.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109]
 gi|260413381|gb|EEX06677.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109]
          Length = 794

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGKT  L  R+  L+  +   P+ +L +T T  AA EM  R LE++     L+ 
Sbjct: 24  VVAGAGSGKTRALTHRIAHLIGEHGVDPAQILAVTFTNKAAREMKER-LELL-----LAQ 77

Query: 95  EILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-- 151
           ++  ++  +     P  +   S++R       E    L + T HA   A M ++ ++   
Sbjct: 78  KLAQSQYGQPWSTLPAVEQRQSRSR----IYREVTKELWIGTFHALF-ARMLRYDIDKFQ 132

Query: 152 -----NITSHFAIADEEQSKKLIEE 171
                  T  F+I DE  ++ L++E
Sbjct: 133 DSEGLTWTKQFSIYDEADAQSLVKE 157


>gi|239817530|ref|YP_002946440.1| exodeoxyribonuclease V, subunit beta [Variovorax paradoxus S110]
 gi|239804107|gb|ACS21174.1| exodeoxyribonuclease V, beta subunit [Variovorax paradoxus S110]
          Length = 1263

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 16/135 (11%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAH------------PSTLLCLTHTKAAAAEMSH 80
           S  + A+AG+GKT  +    +RL+L +              PS +L +T T+AA  E+S 
Sbjct: 15  SRLIEASAGTGKTWTIAALYVRLVLGHGASDPDQGFGRPLIPSEILVMTFTRAATRELSD 74

Query: 81  RV----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           R+    L+    +   S     + +T++       S  + A   L    E+     V TI
Sbjct: 75  RIRARLLDAARCFRGESPAAGDSLMTELLASYAPGSARTHAAWRLAMAAESMDDAAVHTI 134

Query: 137 HAFCEAIMQQFPLEA 151
            A+C+ ++++   ++
Sbjct: 135 DAWCQRMLREHAFDS 149


>gi|331266303|ref|YP_004325933.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5]
 gi|326682975|emb|CBZ00592.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5]
          Length = 763

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|270292792|ref|ZP_06199003.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143]
 gi|270278771|gb|EFA24617.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143]
          Length = 763

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|126434064|ref|YP_001069755.1| UvrD/REP helicase [Mycobacterium sp. JLS]
 gi|126233864|gb|ABN97264.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. JLS]
          Length = 707

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
          + + + E +LA  P     V A AG+GKT  + +R+  L+ A    P  +L +T T  AA
Sbjct: 20 LDEEQREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSRAA 77

Query: 76 AEMSHRV 82
           EM  R+
Sbjct: 78 GEMRARL 84


>gi|119026245|ref|YP_910090.1| putative helicase IV [Bifidobacterium adolescentis ATCC 15703]
 gi|118765829|dbj|BAF40008.1| putative helicase IV [Bifidobacterium adolescentis ATCC 15703]
          Length = 690

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83
           V A AG+GKT  ++  +  LL    A P  +L L+ TKA+A +MS R++
Sbjct: 149 VLAGAGTGKTTTIIGYIAWLLATKRAAPEEILVLSFTKASAGDMSQRIM 197


>gi|28900527|ref|NP_800182.1| DNA helicase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365408|ref|ZP_05777945.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus K5030]
 gi|260877474|ref|ZP_05889829.1| DNA helicase IV [Vibrio parahaemolyticus AN-5034]
 gi|260894855|ref|ZP_05903351.1| DNA helicase IV [Vibrio parahaemolyticus Peru-466]
 gi|28808907|dbj|BAC62015.1| helicase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085316|gb|EFO35011.1| DNA helicase IV [Vibrio parahaemolyticus Peru-466]
 gi|308090545|gb|EFO40240.1| DNA helicase IV [Vibrio parahaemolyticus AN-5034]
 gi|308114411|gb|EFO51951.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus K5030]
          Length = 689

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  R+++ +
Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268


>gi|237714589|ref|ZP_04545070.1| ATP-dependent DNA helicase [Bacteroides sp. D1]
 gi|262406455|ref|ZP_06083004.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22]
 gi|294643703|ref|ZP_06721503.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC
           2a]
 gi|229445358|gb|EEO51149.1| ATP-dependent DNA helicase [Bacteroides sp. D1]
 gi|262355158|gb|EEZ04249.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22]
 gi|292640941|gb|EFF59159.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC
           2a]
          Length = 792

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AGSGKT +L  ++  LL      +P  +L LT T  AA EM  R+           
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                            +  M +AR+L +            T H+    I++        
Sbjct: 75  ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEAQYIGF 108

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           TS F I D   SK L+    K
Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129


>gi|89098260|ref|ZP_01171145.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           NRRL B-14911]
 gi|89087117|gb|EAR66233.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           NRRL B-14911]
          Length = 686

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85
           + AGSGKT +L  R+  ++ +    PS +L +T+TK A+ EM  R+  I
Sbjct: 63  SGAGSGKTTVLTCRIGYMIHSREISPSNILLVTYTKKASVEMIERLARI 111


>gi|294085888|ref|YP_003552648.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665463|gb|ADE40564.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 743

 Score = 36.6 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V + AG+GKT +L  R+  L+ +  A P  +L +T T  AA EM  R+ +++
Sbjct: 34 VLSGAGTGKTRVLTSRLAELVASGTAKPWNILAVTFTNKAAREMKSRIGDMV 85


>gi|240948326|ref|ZP_04752712.1| ATP-dependent DNA helicase [Actinobacillus minor NM305]
 gi|240297365|gb|EER47906.1| ATP-dependent DNA helicase [Actinobacillus minor NM305]
          Length = 672

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVIINKIAHLIAYCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|33598621|ref|NP_886264.1| ATP-dependent DNA helicase [Bordetella parapertussis 12822]
 gi|33574750|emb|CAE39409.1| ATP-dependent DNA helicase [Bordetella parapertussis]
          Length = 661

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 38/135 (28%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++ Q++  LL    +    ++ LT T  AA EM+ RV  ++       D  
Sbjct: 3   AGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLV-------DPK 55

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           L+                               GL + T HA    ++++    A +   
Sbjct: 56  LAK------------------------------GLTISTFHALGVRLLREEAAHAGLKPQ 85

Query: 157 FAIADEEQSKKLIEE 171
           F+I D + +  +I+E
Sbjct: 86  FSILDADDAMSIIQE 100


>gi|15827263|ref|NP_301526.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN]
 gi|221229741|ref|YP_002503157.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
 gi|13092812|emb|CAC30146.1| putative ATP-dependent DNA helicase [Mycobacterium leprae]
 gi|219932848|emb|CAR70731.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 717

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEM 78
          + E +LA  P     V A AG+GKT  +  R+  L+ A  H +T  +L +T T+ AAAEM
Sbjct: 19 QREAVLA--PRGPVCVLAGAGTGKTRTITHRIAHLVGAG-HVATGQVLAVTFTQRAAAEM 75

Query: 79 SHRVLEIITAWSHLSD 94
            R+  +  A   +SD
Sbjct: 76 RSRLRALGAAVQAVSD 91


>gi|260753941|ref|YP_003226834.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258553304|gb|ACV76250.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 1047

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
           V A  GSGKT +L QR+  L+   A P+   L LT T+ A  E+  RV +++
Sbjct: 496 VLAGPGSGKTKMLTQRIAHLIQEKAIPAEKCLLLTFTRRATDELKARVKQLL 547


>gi|320530550|ref|ZP_08031607.1| glycosyltransferase, group 2 family protein [Selenomonas artemidis
           F0399]
 gi|320137223|gb|EFW29148.1| glycosyltransferase, group 2 family protein [Selenomonas artemidis
           F0399]
          Length = 714

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 158 AIADEEQSKKLIEEAKKS----TLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDII 212
           ++ADEE+ + L+ E K++    T   I  + ++ LKK+   +LE + NDE +E L+SD  
Sbjct: 400 SVADEEELRALLRERKETRPILTYGIITYNRSKYLKKSLKSVLEQVGNDELVEVLVSDNC 459

Query: 213 S 213
           S
Sbjct: 460 S 460


>gi|260577890|ref|ZP_05845821.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC
          43734]
 gi|258603984|gb|EEW17230.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC
          43734]
          Length = 1205

 Score = 36.6 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRV 82
          ++ + P  +  V A AG+GKT  +  R +  ++AN  A P  +L LT T+ AAAE+  R+
Sbjct: 30 VIQAGPFGNFLVVAGAGAGKTETMAARAV-WMVANGYARPEQILGLTFTRKAAAELGERI 88


>gi|229526775|ref|ZP_04416179.1| DNA helicase IV [Vibrio cholerae bv. albensis VL426]
 gi|229336933|gb|EEO01951.1| DNA helicase IV [Vibrio cholerae bv. albensis VL426]
          Length = 699

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276


>gi|168483162|ref|ZP_02708114.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          CDC1873-00]
 gi|172043466|gb|EDT51512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          CDC1873-00]
          Length = 763

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          S  + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 22 SLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|254225192|ref|ZP_04918805.1| helicase IV [Vibrio cholerae V51]
 gi|125622291|gb|EAZ50612.1| helicase IV [Vibrio cholerae V51]
          Length = 699

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276


>gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
 gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
          Length = 1200

 Score = 36.6 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AG+GKTH L  R   LL ++       +L LT T+ AA EM  R+   +  W    
Sbjct: 37  VQAGAGTGKTHTLSSRFAWLLASDPTCRVEQILTLTFTEKAAREMRDRIRCRLLQWLEAE 96

Query: 94  DEIL 97
            E L
Sbjct: 97  PEKL 100


>gi|283457706|ref|YP_003362292.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133707|dbj|BAI64472.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1279

 Score = 36.6 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 41  GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM-------SHRVLEI--ITAWSH 91
           G+GKTH L +R LR L     P+ LL L  T+ AA  M       S R L +    AW+ 
Sbjct: 11  GTGKTHHLTERALRYLADGNDPARLLILAPTRTAATRMRDTIAASSDRSLSVAPTRAWAA 70

Query: 92  LSDEILSAEITK 103
            + ++L    T+
Sbjct: 71  YAFDLLKRAQTR 82


>gi|153800763|ref|ZP_01955349.1| helicase IV [Vibrio cholerae MZO-3]
 gi|124123738|gb|EAY42481.1| helicase IV [Vibrio cholerae MZO-3]
          Length = 699

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276


>gi|37680798|ref|NP_935407.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016]
 gi|37199547|dbj|BAC95378.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016]
          Length = 1221

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 28/153 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA  E+  R+   
Sbjct: 38  IEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIR-- 95

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-------NKSDMSKARHLLITILETPGGLKVQTIHA 138
               + + D  L+    + + + P       +  D  +A  +L+          V TIH 
Sbjct: 96  ----ARIHDARLA--FARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHG 149

Query: 139 FCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169
           FC+ ++ Q   E+     + F + DE Q K  +
Sbjct: 150 FCQRMLTQNAFESGSRFNNEF-VTDESQLKAQV 181


>gi|121585589|ref|ZP_01675385.1| helicase IV [Vibrio cholerae 2740-80]
 gi|121725960|ref|ZP_01679260.1| helicase IV [Vibrio cholerae V52]
 gi|147671874|ref|YP_001215495.1| DNA helicase IV [Vibrio cholerae O395]
 gi|153211888|ref|ZP_01947735.1| helicase IV [Vibrio cholerae 1587]
 gi|153818597|ref|ZP_01971264.1| helicase IV [Vibrio cholerae NCTC 8457]
 gi|153820788|ref|ZP_01973455.1| helicase IV [Vibrio cholerae B33]
 gi|153824514|ref|ZP_01977181.1| helicase IV [Vibrio cholerae MZO-2]
 gi|153829185|ref|ZP_01981852.1| helicase IV [Vibrio cholerae 623-39]
 gi|227812284|ref|YP_002812294.1| helicase IV [Vibrio cholerae M66-2]
 gi|229510018|ref|ZP_04399498.1| DNA helicase IV [Vibrio cholerae B33]
 gi|229514169|ref|ZP_04403630.1| DNA helicase IV [Vibrio cholerae TMA 21]
 gi|229516421|ref|ZP_04405868.1| DNA helicase IV [Vibrio cholerae RC9]
 gi|229522282|ref|ZP_04411698.1| DNA helicase IV [Vibrio cholerae TM 11079-80]
 gi|229528406|ref|ZP_04417797.1| DNA helicase IV [Vibrio cholerae 12129(1)]
 gi|229605656|ref|YP_002876360.1| DNA helicase IV [Vibrio cholerae MJ-1236]
 gi|254849875|ref|ZP_05239225.1| helicase IV [Vibrio cholerae MO10]
 gi|255746520|ref|ZP_05420467.1| DNA helicase IV [Vibrio cholera CIRS 101]
 gi|262158892|ref|ZP_06030005.1| DNA helicase IV [Vibrio cholerae INDRE 91/1]
 gi|262168561|ref|ZP_06036257.1| DNA helicase IV [Vibrio cholerae RC27]
 gi|298499514|ref|ZP_07009320.1| helicase IV [Vibrio cholerae MAK 757]
 gi|9658137|gb|AAF96616.1| helicase IV [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550206|gb|EAX60220.1| helicase IV [Vibrio cholerae 2740-80]
 gi|121631725|gb|EAX64093.1| helicase IV [Vibrio cholerae V52]
 gi|124116964|gb|EAY35784.1| helicase IV [Vibrio cholerae 1587]
 gi|126510880|gb|EAZ73474.1| helicase IV [Vibrio cholerae NCTC 8457]
 gi|126521831|gb|EAZ79054.1| helicase IV [Vibrio cholerae B33]
 gi|146314257|gb|ABQ18797.1| helicase IV [Vibrio cholerae O395]
 gi|148875298|gb|EDL73433.1| helicase IV [Vibrio cholerae 623-39]
 gi|149742068|gb|EDM56097.1| helicase IV [Vibrio cholerae MZO-2]
 gi|227011426|gb|ACP07637.1| helicase IV [Vibrio cholerae M66-2]
 gi|227015220|gb|ACP11429.1| helicase IV [Vibrio cholerae O395]
 gi|229334768|gb|EEO00254.1| DNA helicase IV [Vibrio cholerae 12129(1)]
 gi|229340267|gb|EEO05273.1| DNA helicase IV [Vibrio cholerae TM 11079-80]
 gi|229346302|gb|EEO11273.1| DNA helicase IV [Vibrio cholerae RC9]
 gi|229348149|gb|EEO13107.1| DNA helicase IV [Vibrio cholerae TMA 21]
 gi|229352463|gb|EEO17403.1| DNA helicase IV [Vibrio cholerae B33]
 gi|229372142|gb|ACQ62564.1| DNA helicase IV [Vibrio cholerae MJ-1236]
 gi|254845580|gb|EET23994.1| helicase IV [Vibrio cholerae MO10]
 gi|255736274|gb|EET91672.1| DNA helicase IV [Vibrio cholera CIRS 101]
 gi|262023090|gb|EEY41795.1| DNA helicase IV [Vibrio cholerae RC27]
 gi|262029465|gb|EEY48116.1| DNA helicase IV [Vibrio cholerae INDRE 91/1]
 gi|297541495|gb|EFH77546.1| helicase IV [Vibrio cholerae MAK 757]
 gi|327485726|gb|AEA80132.1| DNA helicase IV [Vibrio cholerae LMA3894-4]
          Length = 699

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276


>gi|293603085|ref|ZP_06685519.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC
          43553]
 gi|292818479|gb|EFF77526.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC
          43553]
          Length = 687

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  LL    +    ++ LT T  AA EM  RV  ++
Sbjct: 28 VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMDERVKTLV 79


>gi|261212475|ref|ZP_05926760.1| DNA helicase IV [Vibrio sp. RC341]
 gi|260838406|gb|EEX65062.1| DNA helicase IV [Vibrio sp. RC341]
          Length = 687

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 217 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILMVAFARDAAQEMAERL 264


>gi|161582042|ref|NP_233104.2| DNA helicase IV [Vibrio cholerae O1 biovar eltor str. N16961]
          Length = 687

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 217 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 264


>gi|85059009|ref|YP_454711.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans']
 gi|84779529|dbj|BAE74306.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans']
          Length = 684

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           RS  V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+
Sbjct: 210 RSLLVLAGAGSGKTSLLVARAGWLLRRKLATPEQILLLAFGRQAAQEMDERL 261


>gi|297580262|ref|ZP_06942189.1| helicase IV [Vibrio cholerae RC385]
 gi|297535908|gb|EFH74742.1| helicase IV [Vibrio cholerae RC385]
          Length = 699

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+
Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276


>gi|306825147|ref|ZP_07458489.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071
          str. 73H25AP]
 gi|304432583|gb|EFM35557.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071
          str. 73H25AP]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|306829578|ref|ZP_07462768.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249]
 gi|304428664|gb|EFM31754.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|208435346|ref|YP_002267012.1| DNA helicase II [Helicobacter pylori G27]
 gi|208433275|gb|ACI28146.1| DNA helicase II [Helicobacter pylori G27]
          Length = 682

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
          ++++ AS       + A AGSGKT  L  R+  L+     PS   L LT T  A+ EM  
Sbjct: 15 AQRIAASHVQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKEMQE 74

Query: 81 RVLEII 86
          R L+++
Sbjct: 75 RALKLL 80


>gi|15900955|ref|NP_345559.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4]
 gi|111657604|ref|ZP_01408340.1| hypothetical protein SpneT_02001214 [Streptococcus pneumoniae
          TIGR4]
 gi|14972562|gb|AAK75199.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|317404550|gb|EFV84957.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 687

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  LL    +    ++ LT T  AA EM  RV  ++
Sbjct: 28 VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMDERVRTLV 79


>gi|293365526|ref|ZP_06612235.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
 gi|291315894|gb|EFE56338.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|237752329|ref|ZP_04582809.1| helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375818|gb|EEO25909.1| helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 897

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS---DEILSAEITKIQG--KKPN- 110
           +  A PS +L LT TK AA EM  R+L  +    +     D I   E+  I    ++P+ 
Sbjct: 1   MQGAKPSNILTLTFTKKAAKEMEERILHNLKELYYNKNNRDYIKEFELISINKTLQEPDW 60

Query: 111 KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
           K+  +K   +    L     LK+ TI AF + I++ F     +   F + +E+
Sbjct: 61  KNIENKINSVYHEFLRQD--LKITTIDAFFQKILKNFCWYVGVEYDFELQEED 111


>gi|56552380|ref|YP_163219.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543954|gb|AAV90108.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 1047

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
           V A  GSGKT +L QR+  L+   A P+   L LT T+ A  E+  RV +++
Sbjct: 496 VLAGPGSGKTKMLTQRIAHLIQEKAIPAEKCLLLTFTRRATDELKARVKQLL 547


>gi|262369123|ref|ZP_06062452.1| ATP-dependent DNA helicase [Acinetobacter johnsonii SH046]
 gi|262316801|gb|EEY97839.1| ATP-dependent DNA helicase [Acinetobacter johnsonii SH046]
          Length = 679

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71
          + L SQ   +QL A   T+    V A AGSGKT ++ +++  L+     P+  +  +T T
Sbjct: 1  MSLASQLNDKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVKHCGIPAYRITAMTFT 60

Query: 72 KAAAAEMSHRVLEIIT 87
            AA EM  RV ++++
Sbjct: 61 NKAAREMKERVTKLLS 76


>gi|149024889|ref|ZP_01836290.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72]
 gi|147929512|gb|EDK80506.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|148241321|ref|YP_001226478.1| UvrD/REP helicase [Synechococcus sp. RCC307]
 gi|147849631|emb|CAK27125.1| UvrD/REP helicase [Synechococcus sp. RCC307]
          Length = 784

 Score = 36.2 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          V A AGSGKT  L  R+  L+  + A P+ +L +T T  AA EM  R
Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER 70


>gi|149003797|ref|ZP_01828629.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP14-BS69]
 gi|225861053|ref|YP_002742562.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|237650760|ref|ZP_04525012.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI
          1974]
 gi|237822347|ref|ZP_04598192.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI
          1974M2]
 gi|298230846|ref|ZP_06964527.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str.
          Canada MDR_19F]
 gi|298255795|ref|ZP_06979381.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str.
          Canada MDR_19A]
 gi|298502897|ref|YP_003724837.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          TCH8431/19A]
 gi|303254202|ref|ZP_07340314.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455]
 gi|303259750|ref|ZP_07345725.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP-BS293]
 gi|303262925|ref|ZP_07348860.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP14-BS292]
 gi|303264888|ref|ZP_07350804.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397]
 gi|303266868|ref|ZP_07352746.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457]
 gi|303268905|ref|ZP_07354690.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458]
 gi|147758243|gb|EDK65245.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP14-BS69]
 gi|225727044|gb|ACO22895.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298238492|gb|ADI69623.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          TCH8431/19A]
 gi|301802021|emb|CBW34750.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
          INV200]
 gi|302598873|gb|EFL65907.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455]
 gi|302635902|gb|EFL66402.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP14-BS292]
 gi|302638955|gb|EFL69415.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP-BS293]
 gi|302641523|gb|EFL71885.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458]
 gi|302643566|gb|EFL73835.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457]
 gi|302645576|gb|EFL75807.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397]
 gi|327389355|gb|EGE87700.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          GA04375]
 gi|332075421|gb|EGI85890.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          GA41301]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|124088621|ref|XP_001347170.1| Steroid dehydrogenase [Paramecium tetraurelia strain d4-2]
 gi|145474181|ref|XP_001423113.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057559|emb|CAH03543.1| Steroid dehydrogenase, putative [Paramecium tetraurelia]
 gi|124390173|emb|CAK55715.1| unnamed protein product [Paramecium tetraurelia]
          Length = 292

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 9/78 (11%)

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS---IMLDNNEELKKAFYE 194
            +C+ + QQ     N+     + +EE++KKLIEE  K + +    +++D N  L++ F++
Sbjct: 54  GYCQVLAQQ-----NVNICMLVRNEEKAKKLIEELSKGSTSKFKIVVVDFNNSLEEGFFD 108

Query: 195 -ILEISNDEDIETLISDI 211
            + +   + DI  LI+++
Sbjct: 109 RVYKQIENLDIGLLINNV 126


>gi|146277860|ref|YP_001168019.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556101|gb|ABP70714.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025]
          Length = 978

 Score = 36.2 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 17/146 (11%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTH 70
           +TI+    T  ++L       +  V A AGSGKT ++  +   L+ A    P  +L L  
Sbjct: 195 DTIESKPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRKPEEILLLAF 254

Query: 71  TKAAAAEMSHRV--LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA----RHLLITI 124
            K AA EMS RV     +   +     I    I  ++G KP  +D +      R+L+  I
Sbjct: 255 AKNAAEEMSERVEARSGVPISARTFHAIAYDIIGIVEGSKPALADHATDDLAFRNLIKQI 314

Query: 125 LETPGGLKVQTIHAFCE---AIMQQF 147
           L+         +HA  E   AI+Q F
Sbjct: 315 LK-------DLVHALSEVSTAIIQWF 333


>gi|291454017|ref|ZP_06593407.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356966|gb|EFE83868.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 743

 Score = 36.2 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSA---------WVSANAGSGKTHILVQRVLRLLLANA 60
           H+ +   + ++  + L   DP + A          V A AG+GKT  L  R+   +  N 
Sbjct: 22  HTPSFPRVPESADDVLAGLDPEQRAVATALHGPVCVLAGAGTGKTRALTHRIAYGVRTNR 81

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEI 85
             P+++L +T T  AA EM  R+ ++
Sbjct: 82  FQPTSVLAVTFTNRAAGEMRGRLRQL 107


>gi|15903039|ref|NP_358589.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae R6]
 gi|116515714|ref|YP_816449.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39]
 gi|15458610|gb|AAK99799.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
 gi|116076290|gb|ABJ54010.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|322376782|ref|ZP_08051275.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334]
 gi|321282589|gb|EFX59596.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYNL 75


>gi|322375316|ref|ZP_08049829.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300]
 gi|321279579|gb|EFX56619.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|320155533|ref|YP_004187912.1| exodeoxyribonuclease V subunit beta RecB [Vibrio vulnificus
           MO6-24/O]
 gi|319930845|gb|ADV85709.1| exodeoxyribonuclease V beta chain RecB [Vibrio vulnificus MO6-24/O]
          Length = 1206

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 28/153 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA  E+  R+   
Sbjct: 23  IEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIR-- 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-------NKSDMSKARHLLITILETPGGLKVQTIHA 138
               + + D  L+    + + + P       +  D  +A  +L+          V TIH 
Sbjct: 81  ----ARIHDARLA--FARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHG 134

Query: 139 FCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169
           FC+ ++ Q   E+     + F + DE Q K  +
Sbjct: 135 FCQRMLTQNAFESGSRFNNEF-VTDESQLKAQV 166


>gi|301800058|emb|CBW32653.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
          OXC141]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|289168033|ref|YP_003446302.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6]
 gi|288907600|emb|CBJ22437.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|225858900|ref|YP_002740410.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585]
 gi|225721717|gb|ACO17571.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|221231829|ref|YP_002510981.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
          ATCC 700669]
 gi|220674289|emb|CAR68831.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
          ATCC 700669]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|169832763|ref|YP_001694512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          Hungary19A-6]
 gi|168995265|gb|ACA35877.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          Hungary19A-6]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|163815569|ref|ZP_02206942.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759]
 gi|158449206|gb|EDP26201.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759]
          Length = 789

 Score = 36.2 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 43/158 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT ++  RV  L+     +P  +L +T T  AA EM  RV  I+        
Sbjct: 37  ILAGAGSGKTRVITHRVAYLMDHEGVNPLNILAITFTNKAAREMRDRVDLIVG------- 89

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E    + V T H+ C  I++++  +    
Sbjct: 90  -------------------------------EGADRVWVSTFHSLCVRILRRYADKIGYE 118

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            +F I D +  K  +    KS L    +D     +K F
Sbjct: 119 KNFDIYDSDDQKSTV----KSILKDFQIDPKRYPEKMF 152


>gi|322387882|ref|ZP_08061489.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
          700779]
 gi|321141155|gb|EFX36653.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
          700779]
          Length = 762

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|194397544|ref|YP_002037718.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54]
 gi|194357211|gb|ACF55659.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|148998353|ref|ZP_01825795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70]
 gi|307067730|ref|YP_003876696.1| superfamily I DNA and RNA helicase [Streptococcus pneumoniae
          AP200]
 gi|147755750|gb|EDK62795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70]
 gi|306409267|gb|ADM84694.1| Superfamily I DNA and RNA helicase [Streptococcus pneumoniae
          AP200]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|319792357|ref|YP_004153997.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315594820|gb|ADU35886.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 808

 Score = 36.2 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
          + L+     EQ  A + P  +A + A AGSGKT +L  R+  LL         +L +T T
Sbjct: 15 LPLLQNLNPEQRAAVTLPQGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFT 74

Query: 72 KAAAAEMSHRVLEII 86
            AA EM  R+  I+
Sbjct: 75 NKAAKEMMTRLTAIL 89


>gi|301794204|emb|CBW36623.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
          INV104]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|168494521|ref|ZP_02718664.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          CDC3059-06]
 gi|225854583|ref|YP_002736095.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA]
 gi|183575566|gb|EDT96094.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          CDC3059-06]
 gi|225724045|gb|ACO19898.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|148989130|ref|ZP_01820520.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73]
 gi|147925353|gb|EDK76431.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|149006240|ref|ZP_01829952.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP18-BS74]
 gi|307127381|ref|YP_003879412.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B]
 gi|147762017|gb|EDK68979.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP18-BS74]
 gi|306484443|gb|ADM91312.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B]
 gi|332075042|gb|EGI85513.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          GA17545]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|71892050|ref|YP_277780.1| exonuclease V [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796156|gb|AAZ40907.1| exonuclease V [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 1187

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 26/145 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRV---- 82
           + A+AG+GKT+ L+   +RLLL   + S          +L +T TK+A  E+ HR+    
Sbjct: 17  IEASAGTGKTYTLIIIYIRLLLCLGNRSDFSRPLTVKEILVVTFTKSAVRELRHRIRENI 76

Query: 83  ----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
               L+ +  +SH  + + S  + +I   +   + +S+A        +      + TIH+
Sbjct: 77  HQFRLDCMRGYSH--NFLFSKLLLQIHNVELAINQLSEAE-------KKINQASIFTIHS 127

Query: 139 FCEAIMQQFPLEANITSHFAIADEE 163
           FC+ I+    +E N+  +  I D E
Sbjct: 128 FCQNILNHNTIELNMLFNTNIVDNE 152


>gi|307703485|ref|ZP_07640427.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
 gi|307622892|gb|EFO01887.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
          Length = 739

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|261866905|ref|YP_003254827.1| ATP-dependent DNA helicase Rep [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|261412237|gb|ACX81608.1| ATP-dependent DNA helicase Rep [Aggregatibacter
          actinomycetemcomitans D11S-1]
          Length = 671

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV + I
Sbjct: 20 VLAGAGSGKTRVIINKIAHLIDKCGYFPKQIAAVTFTNKAAREMKERVAQSI 71


>gi|160884387|ref|ZP_02065390.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483]
 gi|156110126|gb|EDO11871.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483]
          Length = 792

 Score = 36.2 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AGSGKT +L  ++  LL      +P  +L LT T  AA EM  R+           
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                            +  M +AR+L +            T H+    I++        
Sbjct: 75  ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEATFIGF 108

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           TS F I D   SK L+    K
Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129


>gi|68536698|ref|YP_251403.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
          K411]
 gi|68264297|emb|CAI37785.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
          K411]
          Length = 1205

 Score = 36.2 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 6  SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AH 61
          S QE S+ +        EQ  ++ + P  +  V A AG+GKT  +  R +  ++AN  A 
Sbjct: 9  SPQELSQLMGQKFAPTDEQADVIQAGPFGNFLVVAGAGAGKTETMAARAV-WMVANGYAR 67

Query: 62 PSTLLCLTHTKAAAAEMSHRV 82
          P  +L LT T+ AAAE+  R+
Sbjct: 68 PEQILGLTFTRKAAAELGERI 88


>gi|168486496|ref|ZP_02711004.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          CDC1087-00]
 gi|183570538|gb|EDT91066.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          CDC1087-00]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|322391967|ref|ZP_08065431.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC
          700780]
 gi|321145193|gb|EFX40590.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC
          700780]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|307708772|ref|ZP_07645234.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261]
 gi|307615138|gb|EFN94349.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 71


>gi|253991620|ref|YP_003042976.1| ATP-dependent DNA helicase Rep [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783070|emb|CAQ86235.1| Rep helicase, a single-stranded DNA dependent ATPase [Photorhabdus
           asymbiotica]
          Length = 675

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 42/172 (24%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           T    V A AGSGKT ++  ++  L+ +    P  +  +T T  AA EM  RV + +   
Sbjct: 15  TGPCLVLAGAGSGKTRVITNKIAHLIRICGYQPRHIAAVTFTNKAAREMKERVAQTL--- 71

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                           G++  K                  GL + T H     I+++   
Sbjct: 72  ----------------GRQEAK------------------GLMISTFHTLGLEIIKREYK 97

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
              + S+F++ DE+    L+    K   A ++ ++ E L+K    I    ND
Sbjct: 98  ALGMKSNFSLFDEQDQMALL----KDLTADLLEEDKELLQKLIASISNWKND 145


>gi|300766625|ref|ZP_07076542.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|300495725|gb|EFK30876.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
          Length = 759

 Score = 36.2 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  RV  L+     +P  +L +T T  AA EM  RV +++
Sbjct: 31 IMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLL 82


>gi|163854653|ref|YP_001628951.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804]
 gi|163258381|emb|CAP40680.1| ATP-dependent DNA helicase [Bordetella petrii]
          Length = 685

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++ Q++  LL    +    ++ LT T  AA EM  RV  ++
Sbjct: 28 VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMDERVKTLV 79


>gi|148994163|ref|ZP_01823478.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP9-BS68]
 gi|168488930|ref|ZP_02713129.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195]
 gi|147927406|gb|EDK78436.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP9-BS68]
 gi|183572486|gb|EDT93014.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195]
 gi|332073447|gb|EGI83926.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          GA17570]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|254556106|ref|YP_003062523.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
 gi|254045033|gb|ACT61826.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
          Length = 755

 Score = 36.2 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  RV  L+     +P  +L +T T  AA EM  RV +++
Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLL 78


>gi|221145759|gb|ACL99766.1| UvrD-like protein [Plasmodium falciparum]
          Length = 693

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 17/130 (13%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A  GSGKT  L  R+++ ++      +++C+T T  AA+++  ++++ I     L D  +
Sbjct: 22  ACPGSGKTSTLTARIIKSIIE--EKQSIVCITFTNYAASDLKDKIMKKINC---LIDICV 76

Query: 98  SAEITKIQGKK---------PNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             +I +               NK  ++ K    +  +L T     + TIH+FC  I+ ++
Sbjct: 77  DNKINQKLFNNKNNKINFSLKNKCTLNNKMNKSIFKVLNTVTF--IGTIHSFCRYILYKY 134

Query: 148 PLEANITSHF 157
                I + F
Sbjct: 135 KGTFKILTDF 144


>gi|28377922|ref|NP_784814.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
 gi|308180103|ref|YP_003924231.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
          plantarum ST-III]
 gi|28270756|emb|CAD63661.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
 gi|308045594|gb|ADN98137.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
          plantarum ST-III]
          Length = 755

 Score = 36.2 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  RV  L+     +P  +L +T T  AA EM  RV +++
Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLL 78


>gi|307706682|ref|ZP_07643488.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321]
 gi|307617926|gb|EFN97087.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321]
          Length = 763

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 71


>gi|224539034|ref|ZP_03679573.1| hypothetical protein BACCELL_03934 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224519362|gb|EEF88467.1| hypothetical protein BACCELL_03934 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 975

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
          A AGSGK+  L  R+ RL+     P +++  T T+ AA  +  RV +
Sbjct: 30 ACAGSGKSRTLAFRISRLIYEGVTPESIIAFTFTEKAAESIKRRVAD 76


>gi|325694248|gb|EGD36164.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK150]
          Length = 762

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|312142659|ref|YP_003994105.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
 gi|311903310|gb|ADQ13751.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
          Length = 1039

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS-D 94
           + A+AG+GKT+ L    L  +        ++ +T T+ A AE+  R++E +        D
Sbjct: 5   LKASAGTGKTYRLSLEYLNAVFEGTDFRNIVVMTFTRKATAEIRERIIEHLKNLKENGID 64

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ--FPLEAN 152
             +  E+ KI      K  + +   +   IL +   + V TI +F   I ++   P    
Sbjct: 65  SDVYEELKKISSLTGEKI-LLQVDSVFEEILSSKEKINVYTIDSFVNKIFKRSIAPYLGI 123

Query: 153 ITSHFAIADEEQSKKLI 169
            T      DEE ++K+ 
Sbjct: 124 KTYEVTDKDEESAEKVF 140


>gi|24379604|ref|NP_721559.1| ATP-dependent DNA helicase [Streptococcus mutans UA159]
 gi|24377553|gb|AAN58865.1|AE014954_4 ATP-dependent DNA helicase [Streptococcus mutans UA159]
          Length = 733

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 2  AGAGSGKTRVLTHRIAYLIDEKFINPWNILAITFTNKAAREMKERAFALNAA 53


>gi|15676683|ref|NP_273827.1| exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis
           MC58]
 gi|7226017|gb|AAF41198.1| exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis
           MC58]
 gi|316983777|gb|EFV62758.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           H44/76]
 gi|325140061|gb|EGC62590.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis CU385]
 gi|325200529|gb|ADY95984.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           H44/76]
          Length = 1204

 Score = 36.2 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRGRLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   + R  LI  L+   G     
Sbjct: 81  SKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + LI
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVEMTEEDGDRLLI 178


>gi|324990953|gb|EGC22888.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK353]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|315222686|ref|ZP_07864575.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211]
 gi|315188372|gb|EFU22098.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211]
          Length = 777

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 42 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 88


>gi|168491981|ref|ZP_02716124.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          CDC0288-04]
 gi|183573779|gb|EDT94307.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          CDC0288-04]
          Length = 763

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|118602354|ref|YP_903569.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm
          (Calyptogena magnifica)]
 gi|118567293|gb|ABL02098.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm
          (Calyptogena magnifica)]
          Length = 718

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79
          K  Q +  +  ++A + A AGSGKT +L  R+  L+   +     +L +T T  AA EM 
Sbjct: 13 KQCQSVTFNNEKNALILAGAGSGKTRVLTHRIAYLITQKDIRIDAILAVTFTNKAATEMR 72

Query: 80 HRV 82
           R+
Sbjct: 73 ERL 75


>gi|325689990|gb|EGD31994.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK115]
          Length = 766

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|322514926|ref|ZP_08067941.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976]
 gi|322119114|gb|EFX91268.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976]
          Length = 672

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVIINKITHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|326423891|ref|NP_760677.2| exodeoxyribonuclease V subunit beta [Vibrio vulnificus CMCP6]
 gi|319999264|gb|AAO10204.2| exodeoxyribonuclease V, beta subunit [Vibrio vulnificus CMCP6]
          Length = 1221

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 28/150 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL +    T          +L +T T+AA  E+  R+   
Sbjct: 38  IEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIR-- 95

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-------NKSDMSKARHLLITILETPGGLKVQTIHA 138
               + + D  L+    + + + P       +  D  +A  +L+          V TIH 
Sbjct: 96  ----ARIHDARLA--FARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHG 149

Query: 139 FCEAIMQQFPLEAN--ITSHFAIADEEQSK 166
           FC+ ++ Q   E+     + F + DE Q K
Sbjct: 150 FCQRMLTQNAFESGSRFNNEF-VTDESQLK 178


>gi|260174597|ref|ZP_05761009.1| ATP-dependent DNA helicase [Bacteroides sp. D2]
 gi|315922861|ref|ZP_07919101.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696736|gb|EFS33571.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 792

 Score = 36.2 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AGSGKT +L  ++  LL      +P  +L LT T  AA EM  R+           
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                            +  M +AR+L +            T H+    I++        
Sbjct: 75  ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEATFIGF 108

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           TS F I D   SK L+    K
Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129


>gi|168576188|ref|ZP_02722082.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          MLV-016]
 gi|183577923|gb|EDT98451.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          MLV-016]
          Length = 763

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 71


>gi|262282913|ref|ZP_06060680.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA]
 gi|262261165|gb|EEY79864.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|77920383|ref|YP_358198.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77546466|gb|ABA90028.1| ATP-dependent DNA helicase PcrA [Pelobacter carbinolicus DSM
          2380]
          Length = 737

 Score = 36.2 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT  L  R+  L+      P  +L +T T  AAAEM  R+  ++
Sbjct: 25 ILAGAGSGKTRTLTHRIAYLIQQQQVEPWQVLAVTFTNKAAAEMRERLQSLV 76


>gi|87302003|ref|ZP_01084837.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701]
 gi|87283571|gb|EAQ75526.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701]
          Length = 797

 Score = 36.2 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT  L  R+  L+  +   P  LL +T T  AA EM  R LE++ A
Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGHHGVDPHQLLAVTFTNKAAREMKER-LELLLA 76


>gi|302918178|ref|XP_003052603.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI
          77-13-4]
 gi|256733543|gb|EEU46890.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI
          77-13-4]
          Length = 1057

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A  GSGKTH L  RV+ L+      PS ++  T T  AA EM  R+
Sbjct: 33 AGPGSGKTHTLTSRVVWLVQRVGYRPSDVIVATFTVKAAREMKDRI 78


>gi|307704751|ref|ZP_07641647.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597]
 gi|307621660|gb|EFO00701.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597]
          Length = 763

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|225856731|ref|YP_002738242.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031]
 gi|225724965|gb|ACO20817.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031]
          Length = 763

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|182677780|ref|YP_001831926.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633663|gb|ACB94437.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 800

 Score = 36.2 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           V A AG+GKT +L  R+  +L    A    +L +T T  AA EM  RV  ++
Sbjct: 62  VLAGAGTGKTRVLTTRIAHILATGRARAHEILAVTFTNKAAREMKERVAALV 113


>gi|15646087|ref|NP_208269.1| DNA helicase II (uvrD) [Helicobacter pylori 26695]
 gi|2314653|gb|AAD08516.1| DNA helicase II (uvrD) [Helicobacter pylori 26695]
          Length = 682

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
          ++++ AS       + A AGSGKT  L  R+  L+     PS   L LT T  A+ EM  
Sbjct: 15 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKEMQE 74

Query: 81 RVLEII 86
          R L+++
Sbjct: 75 RALKLL 80


>gi|327489339|gb|EGF21132.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1058]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|324993214|gb|EGC25134.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK405]
 gi|327461484|gb|EGF07815.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|255323798|ref|ZP_05364924.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
          SK141]
 gi|255298978|gb|EET78269.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
          SK141]
          Length = 1059

 Score = 36.2 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77
          T+ +  +   P     V A AG+GKT  +  RV+  L+AN +  P  +L LT T+ AA +
Sbjct: 22 TEEQAHVIEGPFSPKLVVAGAGAGKTETMASRVV-YLVANGYVRPEQVLGLTFTRKAAQQ 80

Query: 78 MSHRV 82
          +  R+
Sbjct: 81 LEQRI 85


>gi|157151050|ref|YP_001450617.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|157075844|gb|ABV10527.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str.
          Challis substr. CH1]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|324995484|gb|EGC27396.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK678]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|309800338|ref|ZP_07694507.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302]
 gi|308116035|gb|EFO53542.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302]
          Length = 149

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 57/163 (34%), Gaps = 48/163 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + A AGSGKT +L  R+  L+   L N  P  +L +T T  AA EM  R           
Sbjct: 25  IMAGAGSGKTRVLTHRIAYLIDEKLVN--PWNILAITFTNKAAREMKERAY--------- 73

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                        G  P   D                   + T H+ C  I+++      
Sbjct: 74  -------------GLNPATQD-----------------CLIATFHSMCVRILRRDADHIG 103

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
              +F I D  + + L+    K  L  + LD    +   F+E+
Sbjct: 104 YNRNFTIVDPGEQRTLM----KRILKQLNLDPKNGMNGLFWEL 142


>gi|299146105|ref|ZP_07039173.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23]
 gi|298516596|gb|EFI40477.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23]
          Length = 792

 Score = 36.2 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AGSGKT +L  ++  LL      +P  +L LT T  AA EM  R+           
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                            +  M +AR+L +            T H+    I++        
Sbjct: 75  ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEATFIGF 108

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           TS F I D   SK L+    K
Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129


>gi|125717696|ref|YP_001034829.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis
          SK36]
 gi|125497613|gb|ABN44279.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis
          SK36]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|327469639|gb|EGF15108.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK330]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|289667974|ref|ZP_06489049.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. musacearum
          NCPPB4381]
          Length = 658

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74


>gi|115377513|ref|ZP_01464713.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|310820075|ref|YP_003952433.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella
          aurantiaca DW4/3-1]
 gi|115365453|gb|EAU64488.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309393147|gb|ADO70606.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella
          aurantiaca DW4/3-1]
          Length = 688

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEI 85
          V A AGSGKT ++  R++ +L  N  P       +L +T T  AA EM  R++++
Sbjct: 23 VLAGAGSGKTRVITHRIVHIL--NERPGGALARNILAVTFTNKAATEMKERLVKM 75


>gi|325066921|ref|ZP_08125594.1| UvrD/REP helicase [Actinomyces oris K20]
          Length = 84

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
          V A AGSGKT  + QRV+ L+      P  +L LT T+ A AE+
Sbjct: 40 VVAGAGSGKTATMAQRVVYLVATGQVRPDQILGLTFTRKATAEL 83


>gi|251793588|ref|YP_003008317.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus
          NJ8700]
 gi|247534984|gb|ACS98230.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus
          NJ8700]
          Length = 671

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVIINKIAHLIGKCGYLPKQIAAVTFTNKAAREMKERV 67


>gi|308185248|ref|YP_003929381.1| putative ATP-dependent DNA helicase [Helicobacter pylori SJM180]
 gi|308061168|gb|ADO03064.1| putative ATP-dependent DNA helicase [Helicobacter pylori SJM180]
          Length = 681

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+     PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QKRALKLL 79


>gi|293373822|ref|ZP_06620166.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f]
 gi|298481100|ref|ZP_06999294.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22]
 gi|292631221|gb|EFF49855.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f]
 gi|298272674|gb|EFI14241.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22]
          Length = 792

 Score = 36.2 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A AGSGKT +L  ++  LL      +P  +L LT T  AA EM  R+           
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                            +  M +AR+L +            T H+    I++        
Sbjct: 75  ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEATFIGF 108

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           TS F I D   SK L+    K
Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129


>gi|289666279|ref|ZP_06487860.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vasculorum
          NCPPB702]
          Length = 658

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74


>gi|256825720|ref|YP_003149680.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689113|gb|ACV06915.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM
          20547]
          Length = 704

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81
          ++ +A++P  +  V A AG+GKT  +  R+   + A A P+  +L +T T  AA EM  R
Sbjct: 15 QRQVAANPVGAMRVLAGAGTGKTRAITHRIAYGVHAGAFPAQQVLAVTFTARAAGEMRTR 74

Query: 82 V 82
          +
Sbjct: 75 L 75


>gi|218767904|ref|YP_002342416.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           Z2491]
 gi|121051912|emb|CAM08218.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           Z2491]
 gi|319410151|emb|CBY90487.1| exodeoxyribonuclease V beta chain [Neisseria meningitidis WUE 2594]
          Length = 1204

 Score = 36.2 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRGRLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   + R  LI  L+   G     
Sbjct: 81  SKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + LI
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVEMTEEDGDRLLI 178


>gi|294664984|ref|ZP_06730294.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
 gi|325925624|ref|ZP_08187008.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118]
 gi|292605232|gb|EFF48573.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
 gi|325543973|gb|EGD15372.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118]
          Length = 658

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74


>gi|319938934|ref|ZP_08013298.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus
          1_2_62CV]
 gi|319811984|gb|EFW08250.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus
          1_2_62CV]
          Length = 760

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 71


>gi|300863743|ref|ZP_07108674.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506]
 gi|300338250|emb|CBN53820.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506]
          Length = 794

 Score = 36.2 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
          + T D +SQ    Q  + +       V A AGSGKT  L  RV  L+  +   P  +L +
Sbjct: 14 TPTTDFLSQLNPSQRQSVEHFCGPLLVVAGAGSGKTRALTYRVANLIRTHRVDPDNILAV 73

Query: 69 THTKAAAAEMSHRV 82
          T T  AA EM  R+
Sbjct: 74 TFTNKAAREMKERI 87


>gi|294625790|ref|ZP_06704408.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
 gi|292599905|gb|EFF44024.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
          Length = 658

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74


>gi|311739798|ref|ZP_07713632.1| superfamily I DNA and RNA helicase [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311304871|gb|EFQ80940.1| superfamily I DNA and RNA helicase [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 1059

 Score = 36.2 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77
          T+ +  +   P     V A AG+GKT  +  RV+  L+AN +  P  +L LT T+ AA +
Sbjct: 22 TEEQAHVIEGPFSPKLVVAGAGAGKTETMASRVV-YLVANGYVRPEQVLGLTFTRKAAQQ 80

Query: 78 MSHRV 82
          +  R+
Sbjct: 81 LEQRI 85


>gi|21244998|ref|NP_644580.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21110722|gb|AAM39116.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 658

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74


>gi|86137696|ref|ZP_01056272.1| DNA helicase II, putative [Roseobacter sp. MED193]
 gi|85825288|gb|EAQ45487.1| DNA helicase II, putative [Roseobacter sp. MED193]
          Length = 832

 Score = 36.2 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL   +A  + +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTARIVHLLNTGSARTNEILAVTFTNKAAREMKERV 95


>gi|327473788|gb|EGF19206.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK408]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|325696764|gb|EGD38652.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK160]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|325923760|ref|ZP_08185377.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865]
 gi|325545758|gb|EGD16995.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865]
          Length = 658

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74


>gi|296446499|ref|ZP_06888442.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
 gi|296255995|gb|EFH03079.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
          Length = 1135

 Score = 36.2 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           + A  G+GKT  LV RV  L+     P   + LT++  AA E++ R+
Sbjct: 213 LEAGPGTGKTKTLVARVAGLIADGEDPRATVVLTYSNKAACELAERI 259


>gi|21233561|ref|NP_639478.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66770527|ref|YP_245289.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|188993747|ref|YP_001905757.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
          str. B100]
 gi|21115421|gb|AAM43360.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66575859|gb|AAY51269.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|167735507|emb|CAP53722.1| ATP-dependent DNA helicase [Xanthomonas campestris pv.
          campestris]
          Length = 658

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74


>gi|328945990|gb|EGG40137.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1087]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|309378186|emb|CBX23178.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1204

 Score = 36.2 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   + R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|308064238|gb|ADO06125.1| DNA helicase II [Helicobacter pylori Sat464]
          Length = 681

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
           +++++ AS       + A AGSGKT  L  R+  L+     PS   L LT T  A+ EM
Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGTCGVPSENTLTLTFTNKASKEM 71

Query: 79 SHRVLEII 86
            R L+++
Sbjct: 72 QERALKLL 79


>gi|182684161|ref|YP_001835908.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14]
 gi|182629495|gb|ACB90443.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14]
          Length = 763

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R   +  A
Sbjct: 27 AGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78


>gi|78049939|ref|YP_366114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78038369|emb|CAJ26114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
          Length = 658

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++V+++  L+    +P+  +  +T T  +A EM  RV + I  
Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74


>gi|327459916|gb|EGF06256.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1057]
          Length = 762

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R  ++ T
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77


>gi|325203871|gb|ADY99324.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           M01-240355]
          Length = 1204

 Score = 35.8 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   + R  LI  L+   G     
Sbjct: 81  SKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + LI
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|313906496|ref|ZP_07839829.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
 gi|313468662|gb|EFR64031.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
          Length = 799

 Score = 35.8 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 51/177 (28%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++      P  ++ +T T  AA EM  RV +++        
Sbjct: 24  ILAGAGSGKTRVLTCRIAHMIAEKGVAPWNIMAITFTNKAAGEMRERVDQLVG------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                     QG                        + V T H+ C  I++++       
Sbjct: 77  ----------QGAD---------------------NIWVSTFHSSCCRILRRYIDRIGYD 105

Query: 155 SHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNEELKKAFYEILEIS 199
             F I D + SK++++E             ++S LA I    NE +    +E   IS
Sbjct: 106 RSFTIYDTDDSKQVMKEVIRALQLDTKVFKERSILAKISAAKNEMIGPEQFEEEAIS 162


>gi|223042143|ref|ZP_03612314.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
 gi|223017082|gb|EEF15523.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
          Length = 672

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67


>gi|322385749|ref|ZP_08059393.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC
          51100]
 gi|321270487|gb|EFX53403.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC
          51100]
          Length = 762

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71


>gi|254804663|ref|YP_003082884.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           alpha14]
 gi|254668205|emb|CBA04955.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           alpha14]
          Length = 1204

 Score = 35.8 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D  LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAELGDGALSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|319779422|ref|YP_004130335.1| DNA helicase IV [Taylorella equigenitalis MCE9]
 gi|317109446|gb|ADU92192.1| DNA helicase IV [Taylorella equigenitalis MCE9]
          Length = 619

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T+++   A+  +++  V A AG+GKT  ++ RV  L +     P  +L L   K AA EM
Sbjct: 11  TQNQYKAATSNSQNILVLAGAGTGKTSTIIGRVSYLAMHLGIPPEQILMLAFGKDAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHL 120
             R LE + A   +      +     ++K++ K P  + +S+ ++L
Sbjct: 71  QER-LESVDALKSVEVRTFHSLGLNIVSKVEKKMPKLTSLSEDQNL 115


>gi|312194643|ref|YP_004014704.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225979|gb|ADP78834.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1140

 Score = 35.8 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           V A  G+GKT  LV+ V R + A     ++L LT ++ AA E+S R+
Sbjct: 62  VLAGPGTGKTTTLVEAVARRVEAGQELGSILVLTFSRRAARELSERI 108


>gi|255034929|ref|YP_003085550.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
 gi|254947685|gb|ACT92385.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
          Length = 1112

 Score = 35.8 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 21/170 (12%)

Query: 37  SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           S++AGSGKT+ L +  L+L L   +  +   +L +T T AAA EM  R+L ++  ++  +
Sbjct: 6   SSSAGSGKTYTLTKEYLKLALHSNSELYFRHILAVTFTNAAANEMKDRILLMLRTFAAYT 65

Query: 94  DE------ILSAEITKIQGKKPNKSDM---------SKARHLLITILETPGGLKVQTIHA 138
           +       ++   + ++     + +++         ++A+ +   IL       V TI  
Sbjct: 66  ETDAQPHPMMRDVVVEMYPDTEHNTELFAGACQLIAARAQMVFGQILHRYSDFSVMTIDK 125

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           F + ++  F  E  I   F   + +    L++ A    LA I  +  E L
Sbjct: 126 FTQRLISSFTDELGIPFIF---ETQLDSDLLDGAVDRLLARIGQEGEEVL 172


>gi|87122177|ref|ZP_01078060.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121]
 gi|86162497|gb|EAQ63779.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121]
          Length = 1255

 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 20/145 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRVLEII 86
           + A+AG+GKT+ +    LRLLL     S          +L +T T+AA AE+  R+   I
Sbjct: 26  IEASAGTGKTYTIANLYLRLLLPIDSKSGFERALTVDEILVVTFTEAATAELKARIRNRI 85

Query: 87  TA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                        D  LS  +  +      +++++     L+   +      + TIH FC
Sbjct: 86  REARKALLLGQTKDPFLSQLLASM-----TEAEIALGVERLLYAEKQMDEAAIFTIHGFC 140

Query: 141 EAIMQQFPLEANITSHFAIADEEQS 165
           + ++ Q   E+ +     I  +EQ+
Sbjct: 141 QRMLSQNAFESRMLFQQEIETDEQA 165


>gi|298368781|ref|ZP_06980099.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282784|gb|EFI24271.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 1211

 Score = 35.8 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 42/153 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHR----------VLE 84
           + A+AG+GKT+ +     RL++    P  ++L +T TKAA AE+  R          VLE
Sbjct: 21  IEASAGTGKTYGIAALFTRLVVLERLPVESVLAVTFTKAATAELKTRLRARLDEVLQVLE 80

Query: 85  IIT-------------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG- 130
            I+             A  H  D  L A +         ++   ++R  LI  L+   G 
Sbjct: 81  NISDGEDGSDGLDAYCAAHHPDDAFLPALL--------RRALRQESRGRLIVRLKAAIGQ 132

Query: 131 ---LKVQTIHAFCEAIMQQF------PLEANIT 154
                + TIH FC+ I++ +      PL+  +T
Sbjct: 133 FDNAAIYTIHGFCQRILRDYAFLCSAPLDVELT 165


>gi|254441324|ref|ZP_05054817.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307]
 gi|198251402|gb|EDY75717.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307]
          Length = 833

 Score = 35.8 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AG+GKT  L  R+  L+    A P  +L +T T  AA EM +R+
Sbjct: 59  AGAGTGKTKALTCRIAHLMATGRARPDEILAVTFTNKAAREMKNRI 104


>gi|160895970|ref|YP_001561552.1| exodeoxyribonuclease V subunit beta [Delftia acidovorans SPH-1]
 gi|160361554|gb|ABX33167.1| exodeoxyribonuclease V, beta subunit [Delftia acidovorans SPH-1]
          Length = 1274

 Score = 35.8 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 22/156 (14%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAH----------------PSTLLCLTHTKAAAA 76
           S  + A+AG+GKT  +    LRL+L +                  P  +L +T T+AA  
Sbjct: 25  SRLIEASAGTGKTWTIAALYLRLVLGHGEGSLDGISSTAFERPLMPPDILVMTFTRAATR 84

Query: 77  EMSHRVLE-IITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           E+S R+ + +I A      E   A     +  ++   P  +   +A   L    E     
Sbjct: 85  ELSDRIRKRLIEAVQCFRGEAEPAPHDAFLHALREAYPEGAARERAAWRLAMAAECMDDA 144

Query: 132 KVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSK 166
            + TI A+C+ ++++   ++ N+       DE Q +
Sbjct: 145 AIHTIDAWCQRMLREHAFDSGNLFDETLEPDESQRQ 180


>gi|294677028|ref|YP_003577643.1| DNA helicase II [Rhodobacter capsulatus SB 1003]
 gi|294475848|gb|ADE85236.1| DNA helicase II [Rhodobacter capsulatus SB 1003]
          Length = 852

 Score = 35.8 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R+  L+ +  A P+ +L +T T  AA EM  R+
Sbjct: 54 AGAGTGKTKALTARIAHLIHSGRARPNEVLAVTFTNKAAREMKDRI 99


>gi|221135348|ref|ZP_03561651.1| ATP-dependent DNA helicase Rep [Glaciecola sp. HTCC2999]
          Length = 407

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAAAAEMSHRVLEIIT 87
          V A AGSGKT ++  ++  L+     P+  +  +T T  AA EM  RV + +T
Sbjct: 20 VLAGAGSGKTRVITNKIAHLVRECEMPARFIAAVTFTNKAAREMKERVAQTLT 72


>gi|28197981|ref|NP_778295.1| DNA-dependent helicase II [Xylella fastidiosa Temecula1]
 gi|28056041|gb|AAO27944.1| DNA helicase II [Xylella fastidiosa Temecula1]
 gi|307579063|gb|ADN63032.1| DNA-dependent helicase II [Xylella fastidiosa subsp. fastidiosa
          GB514]
          Length = 728

 Score = 35.8 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R++ L   N  P+ +++ +T T  AA E+  R+
Sbjct: 27 ILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFTNKAAGEIQQRI 74


>gi|119775036|ref|YP_927776.1| exodeoxyribonuclease V subunit beta [Shewanella amazonensis SB2B]
 gi|119767536|gb|ABM00107.1| exodeoxyribonuclease V, beta subunit [Shewanella amazonensis SB2B]
          Length = 1224

 Score = 35.8 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAWS 90
           + A+AG+GKT+ +    LRLLL            +L +T T AA +E+  R+   I    
Sbjct: 20  IEASAGTGKTYTIANLYLRLLLGIGQQRPFKVEEILVVTFTNAATSELRDRIRRRIQDGF 79

Query: 91  HLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            L     S +  +T++    P++    +   L +  L+      + TIH FC+ ++    
Sbjct: 80  RLCLGEPSEDRFLTQLLHALPDRQLALRQLDLALKTLDEAA---IYTIHGFCQRVLSDMA 136

Query: 149 LEANI--TSHFAIADEE 163
            E+ +   S F + D E
Sbjct: 137 FESALLFESEFTLDDSE 153


>gi|163847396|ref|YP_001635440.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222525244|ref|YP_002569715.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163668685|gb|ABY35051.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222449123|gb|ACM53389.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 644

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
          E ++L++  +   + A  P     V A AGSGKT +L  R+  L+      P  +L +T 
Sbjct: 2  EQLNLLNPAQRAAVTA--PIGPILVKAGAGSGKTRVLTLRIAYLITHYGVAPQQILAVTF 59

Query: 71 TKAAAAEMSHRV 82
          T  AA EM  R+
Sbjct: 60 TNKAAREMRERL 71


>gi|240115219|ref|ZP_04729281.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID18]
 gi|260440963|ref|ZP_05794779.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI2]
 gi|268600900|ref|ZP_06135067.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18]
 gi|291044290|ref|ZP_06569999.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2]
 gi|268585031|gb|EEZ49707.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18]
 gi|291011184|gb|EFE03180.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2]
          Length = 1200

 Score = 35.8 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|117676144|ref|YP_863720.1| UvrD/REP helicase [Shewanella sp. ANA-3]
 gi|117614968|gb|ABK50421.1| UvrD/REP helicase [Shewanella sp. ANA-3]
          Length = 599

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          +Q L  +   +  V A  GSGKT++LV+   RLL  +   S  L LT T AA  E++ R+
Sbjct: 6  DQGLVIERDDNTLVCALPGSGKTYVLVELTKRLLSRDGAYSVHL-LTFTDAARVELTERM 64

Query: 83 LEIIT 87
          L  +T
Sbjct: 65 LHALT 69


>gi|212710202|ref|ZP_03318330.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM
           30120]
 gi|212687201|gb|EEB46729.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM
           30120]
          Length = 675

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 18/120 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE---------- 84
           V A AGSGKT ++  ++  L+      P  +  +T T  AA EM  RV +          
Sbjct: 20  VLAGAGSGKTRVITNKIAHLIRHCGYQPRQIAAVTFTNKAAREMKERVGQTLGKKEARGL 79

Query: 85  IITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETPGGLKVQTIHA 138
           II+ +  L  EI+  E  K  G K N      +  M+  + L   +LE    L  Q I A
Sbjct: 80  IISTFHTLGLEIIKREY-KALGIKANFSLFDDQDQMALLKELTFDLLEEDKDLLQQLISA 138


>gi|146168499|ref|XP_001016833.2| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|146145189|gb|EAR96588.2| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 881

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            R   ++A AGSGKT  +++   + L    +P  +   T    A+ +M  R +E++  + 
Sbjct: 33  NRDIKITACAGSGKTQCVLEFTKQALKEGFNPKEICITTFNIQASNDMKKRAIELMGKFQ 92

Query: 91  HLSDEILSAE--ITKI 104
               EIL+ +  ITK 
Sbjct: 93  ADQIEILNFDKIITKF 108


>gi|227832527|ref|YP_002834234.1| putative ATP-dependent DNA helicase II [Corynebacterium
          aurimucosum ATCC 700975]
 gi|262183605|ref|ZP_06043026.1| putative ATP-dependent DNA helicase II [Corynebacterium
          aurimucosum ATCC 700975]
 gi|227453543|gb|ACP32296.1| putative ATP-dependent DNA helicase II [Corynebacterium
          aurimucosum ATCC 700975]
          Length = 1070

 Score = 35.8 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
          T+ +  +   P     V A AG+GKT  +  RV+  L+AN    P  +L LT T+ AA +
Sbjct: 25 TQEQAAVIDGPLGPKLVVAGAGAGKTETMASRVVS-LVANGLVRPEQVLGLTFTRKAAQQ 83

Query: 78 MSHRV 82
          +  R+
Sbjct: 84 LEQRI 88


>gi|110834680|ref|YP_693539.1| exodeoxyribonuclease V subunit beta [Alcanivorax borkumensis SK2]
 gi|110647791|emb|CAL17267.1| Exodeoxyribonuclease V beta chain [Alcanivorax borkumensis SK2]
          Length = 1206

 Score = 35.8 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 23/163 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEII 86
           + A+AG+GKT  L    LRL+L +           P  +L +T T+AA  E+  R+ + +
Sbjct: 19  IEASAGTGKTFTLAALYLRLVLGHGGENGFSRPLLPPEILVVTFTEAATEELRERIRDRL 78

Query: 87  TAWSHL--------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
              + +         D +L+A ++       N+   S A+  L    +      + TIH 
Sbjct: 79  ADAARIFADPHAEADDPVLAALLSDYS---ENEQRTSCAQR-LDAAAQWMDEAAIYTIHG 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           FC  +++Q   ++   S F++  +E + +  + A +    S++
Sbjct: 135 FCNRMLKQHAFDSG--SLFSLELQEDASEEQQLAARDYWRSVI 175


>gi|240127764|ref|ZP_04740425.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|268686157|ref|ZP_06153019.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626441|gb|EEZ58841.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|240016125|ref|ZP_04722665.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA6140]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|114320846|ref|YP_742529.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227240|gb|ABI57039.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 683

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV 82
           A V A AGSGKT    +R  R L     P S ++ LT T  AA EM  R+
Sbjct: 16 PAAVLAGAGSGKTRCTTERAARRLTERGLPGSAMVLLTFTNKAAGEMRERL 66


>gi|295090956|emb|CBK77063.1| Superfamily I DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 1133

 Score = 35.8 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79
           + ++  A+ P RS  V A  G+GKT  L  R+  LL +    PS +  +T T  AA E+ 
Sbjct: 515 REQRRAAALPARSMAVIAGPGTGKTGTLTARIRCLLEVRRVRPSEITAVTFTNRAAEELR 574

Query: 80  HRV 82
            R+
Sbjct: 575 ERL 577


>gi|315652267|ref|ZP_07905259.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986]
 gi|315485390|gb|EFU75780.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986]
          Length = 733

 Score = 35.8 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L+ R+  L+   +  P  ++ +T T  AA EM  R+  +I
Sbjct: 27 AGAGSGKTGVLMHRIAYLINEKHIDPYNIMAITFTNKAAKEMKERITNLI 76


>gi|289208791|ref|YP_003460857.1| exodeoxyribonuclease V subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288944422|gb|ADC72121.1| exodeoxyribonuclease V, beta subunit [Thioalkalivibrio sp.
          K90mix]
          Length = 1240

 Score = 35.8 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 9/63 (14%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVL 83
          S  + A+AG+GKT+ +    LRL+L +           P  +L +T T+AA  E+  R+ 
Sbjct: 18 SRLIEASAGTGKTYTIAALYLRLVLGHGELPEGTGELTPPQILVMTFTEAATRELRERIR 77

Query: 84 EII 86
           ++
Sbjct: 78 AVL 80


>gi|308272255|emb|CBX28861.1| hypothetical protein N47_B20070 [uncultured Desulfobacterium sp.]
          Length = 1762

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 10   HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
            +   ++ +     E ++ S P  +  + A  GSGKT +++ R   LL +    P ++L L
Sbjct: 1110 YGRIVESLKNPIQESIVCSSPEDNILILAGPGSGKTTVVIHRCAYLLRVERVPPGSILAL 1169

Query: 69   THTKAAAAEMSHRVLEIITA 88
                +AA  +  R+ ++I +
Sbjct: 1170 CFNHSAALSIRKRLWDLIGS 1189


>gi|190576450|ref|YP_001974295.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas
           maltophilia K279a]
 gi|190014372|emb|CAQ48020.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas
           maltophilia K279a]
          Length = 1226

 Score = 35.8 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 12/130 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  L     RL++        +L +T T AA  E+  R+ E +   + L D
Sbjct: 29  IEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDAATQELRKRIRERLALAARLVD 88

Query: 95  ---------EI-LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                    E+ L+ ++ +   +   +S  +  R L +   E      + TIH FC  ++
Sbjct: 89  LEAADDEAPEVRLTRDVLQRHLQCGTESAAALKRRLQVAADEIDLA-SIFTIHGFCTRVL 147

Query: 145 QQFPLEANIT 154
           ++  LE+  T
Sbjct: 148 REHALESGHT 157


>gi|163816456|ref|ZP_02207820.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759]
 gi|158448156|gb|EDP25151.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759]
          Length = 768

 Score = 35.8 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 20  TKSEQLLASDPTRSAWVS--ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           T +E+ L +  T   +V   A AG+GKT  L  R   L+       S +LC+T T  AA 
Sbjct: 60  TLNERQLDAVTTTEGYVRIIAGAGTGKTKALTHRYAYLVNELGISTSNILCVTFTNKAAR 119

Query: 77  EMSHRVLEII 86
           EMS R+ ++I
Sbjct: 120 EMSKRIRQMI 129


>gi|23428614|gb|AAM12391.1| helicase II [Zymomonas mobilis subsp. mobilis CP4]
          Length = 777

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          V A AG+GKT  L  R+  L+    A PS +L +T T  AA EM  RV  ++ +++
Sbjct: 39 VLAGAGTGKTAALTARLAYLVETLKAWPSQILAVTFTNKAAREMQMRVGYLLGSFA 94


>gi|313888327|ref|ZP_07821998.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845730|gb|EFR33120.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 734

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 41/160 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
           I+ ++  + E LLA++      + A AGSGKT ++  ++  L+     PS  +L +T T 
Sbjct: 3   INTLNDKQKEALLATEG--PLLILAGAGSGKTKVVTSKIAYLIEELQVPSWKILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV       S L DE +S+                               + 
Sbjct: 61  KAANEMRDRV-------SKLIDEDISS-------------------------------MW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           + T H+ C  I+++   +   +S F I D +    +++EA
Sbjct: 83  IGTFHSICVRILRKNIDKIGYSSSFTIYDRDDQLTVVKEA 122


>gi|240125312|ref|ZP_04738198.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268683914|ref|ZP_06150776.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624198|gb|EEZ56598.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|240112479|ref|ZP_04726969.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae MS11]
 gi|268598547|ref|ZP_06132714.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11]
 gi|268582678|gb|EEZ47354.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|240080267|ref|ZP_04724810.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA19]
 gi|240123060|ref|ZP_04736016.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID332]
 gi|268596417|ref|ZP_06130584.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19]
 gi|268681687|ref|ZP_06148549.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332]
 gi|268550205|gb|EEZ45224.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19]
 gi|268621971|gb|EEZ54371.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|239998560|ref|ZP_04718484.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae 35/02]
 gi|240013685|ref|ZP_04720598.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI18]
 gi|240120754|ref|ZP_04733716.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID24-1]
 gi|268594420|ref|ZP_06128587.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02]
 gi|268547809|gb|EEZ43227.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02]
 gi|317163836|gb|ADV07377.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|254493282|ref|ZP_05106453.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291]
 gi|293399482|ref|ZP_06643635.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62]
 gi|226512322|gb|EEH61667.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291]
 gi|291610051|gb|EFF39173.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|206603867|gb|EDZ40347.1| Putative ATP-dependent DNA helicase, UvrD/REP family
          [Leptospirillum sp. Group II '5-way CG']
          Length = 746

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ R+L LL         LL +T T+ AA E+ HR+
Sbjct: 23 VLAPAGSGKTRVVIARLLYLLDRYGWSEERLLVVTFTRKAARELLHRI 70


>gi|240117506|ref|ZP_04731568.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID1]
 gi|268603206|ref|ZP_06137373.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1]
 gi|268587337|gb|EEZ52013.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|229592597|ref|YP_002874716.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens SBW25]
 gi|229364463|emb|CAY52290.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens SBW25]
          Length = 1224

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 14/132 (10%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRV 82
           S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  R+
Sbjct: 15  SQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILVVTFTDAATKELRERI 74

Query: 83  -LEIITAWSHLSDEILS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            + +  A     +EI    A I  ++ + P +   + A  L I   +      V TIH++
Sbjct: 75  RIRLAEAARFFREEIEQPDALIADLRAEYPPEQWPACANRLDIAA-QWMDEAAVSTIHSW 133

Query: 140 CEAIMQQFPLEA 151
           C+ ++++   ++
Sbjct: 134 CQRMLREHAFDS 145


>gi|194098105|ref|YP_002001153.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|193933395|gb|ACF29219.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|59800814|ref|YP_207526.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|59717709|gb|AAW89114.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
          Length = 1200

 Score = 35.8 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   ++R  LI  L+   G     
Sbjct: 81  SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|310639683|ref|YP_003944441.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2]
 gi|309244633|gb|ADO54200.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2]
          Length = 747

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 65/153 (42%), Gaps = 27/153 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA AGSGKT  +V  VL+L+     +      +T T  A+ EM  R LE     + + D
Sbjct: 30  VSAGAGSGKTRTMVATVLQLIDDGEVNIDDFALITFTNKASDEMRER-LE-----NGVYD 83

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            +  AE          K++    R   I   E      + TIH FC  ++  F      T
Sbjct: 84  RVKEAE----------KNNDFTQRTRWIEQKERIASTFIGTIHKFCTMLLLNF----GYT 129

Query: 155 SHFAIADEEQ---SKKLIEEAKKSTLASIMLDN 184
            H  IA E Q   +K   + A K T++   LDN
Sbjct: 130 EH--IAHESQILMAKHYFKTALKKTMSE-ALDN 159


>gi|183600255|ref|ZP_02961748.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827]
 gi|188020043|gb|EDU58083.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827]
          Length = 673

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 18/118 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE---------- 84
           V A AGSGKT ++  ++  L+    + P  +  +T T  AA EM  RV +          
Sbjct: 20  VLAGAGSGKTRVITNKIAHLIRQCGYQPRQIAAVTFTNKAAREMKERVAQTLGRKEARGL 79

Query: 85  IITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETPGGLKVQTI 136
           II+ +  L  EI+  E  K  G K N      +  M+  + L   +LE    L  Q I
Sbjct: 80  IISTFHTLGLEIIKREY-KALGIKANFSLFDDQDQMALLKELTFDLLEEDKDLLQQLI 136


>gi|322372977|ref|ZP_08047513.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150]
 gi|321278019|gb|EFX55088.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150]
          Length = 775

 Score = 35.8 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A S
Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAMALNPATS 86


>gi|301308960|ref|ZP_07214905.1| UvrD/REP helicase family protein [Bacteroides sp. 20_3]
 gi|300832986|gb|EFK63611.1| UvrD/REP helicase family protein [Bacteroides sp. 20_3]
          Length = 871

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP 62
           H  F +H     L  Q +   +   +   +  V ++AGSGKT  +V +V  L  +   +P
Sbjct: 143 HKEFFDHCLKYPLDKQQRRSIVSGEE---NCLVVSSAGSGKTSSIVGKVKYLTEIKKINP 199

Query: 63  STLLCLTHTKAAAAEMSHRV 82
             +L +++T  AAAE++ R+
Sbjct: 200 QNILLISYTNKAAAELTERM 219


>gi|148272380|ref|YP_001221941.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830310|emb|CAN01244.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 637

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEI 85
           V A AG+GKT  +  R+   + A  +P   ++ LT T  AAAE+  R+ E+
Sbjct: 68  VLAGAGTGKTRAITHRIAYGIQAGVYPPNRVMALTFTSRAAAELRGRLREL 118


>gi|258510954|ref|YP_003184388.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
          acidocaldarius DSM 446]
 gi|257477680|gb|ACV57999.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
          acidocaldarius DSM 446]
          Length = 705

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT +L +R+  L+  A      +L +T T  AA EM  R+ ++I
Sbjct: 28 VVAGAGSGKTSVLTRRIAYLIAHAGVAVHEILAITFTNKAAREMKTRIRDLI 79


>gi|124514998|gb|EAY56509.1| putative ATP-dependent DNA helicase, UvrD/REP family
          [Leptospirillum rubarum]
          Length = 746

 Score = 35.8 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ R+L LL         LL +T T+ AA E+ HR+
Sbjct: 23 VLAPAGSGKTRVVIARLLYLLDRYGWSEDRLLVVTFTRKAARELLHRI 70


>gi|323136051|ref|ZP_08071134.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322399142|gb|EFY01661.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 778

 Score = 35.8 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT  L  R+  +L L  A    +L +T T  AA EM  RV  ++
Sbjct: 48 VLAGAGTGKTRALTTRIAHILQLGKARAYEILAVTFTNKAAREMRERVEALV 99


>gi|309390072|gb|ADO77952.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 677

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          +++ A   T    V A AGSGKT  L  R   L+        +L +T T  AA +M  ++
Sbjct: 12 QKIAAQTLTGPVLVLAGAGSGKTRTLTYRTANLIQNGVSHQNILTVTFTNRAADDMKAKI 71

Query: 83 LEIITAWSHLSDEI 96
           ++I   S + DE+
Sbjct: 72 GKLI--GSEIIDEM 83


>gi|284031863|ref|YP_003381794.1| exodeoxyribonuclease V subunit beta [Kribbella flavida DSM 17836]
 gi|283811156|gb|ADB32995.1| exodeoxyribonuclease V, beta subunit [Kribbella flavida DSM 17836]
          Length = 1098

 Score = 35.8 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 26/138 (18%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL 83
           LL   PT +  + A+AG+GKT+ L   V R +    A    +L +T  +AA+ E+  RV 
Sbjct: 6   LLGPLPTGTTVLEASAGTGKTYALAGLVTRYVAEGAARLDEMLLITFGRAASQELRERV- 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL--------------LITILETPG 129
                      ++L AE   +   +P ++D     HL              L   L T  
Sbjct: 65  ---------RCQLLEAE-QALAAPEPWRNDPGLLGHLVDGSAAELAVRHGRLRDALATFD 114

Query: 130 GLKVQTIHAFCEAIMQQF 147
              + T H FC+ +++  
Sbjct: 115 AATIATTHQFCQLVLRSL 132


>gi|242280428|ref|YP_002992557.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
 gi|242123322|gb|ACS81018.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
          Length = 1034

 Score = 35.8 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V A  G+GKT  L+ R+  LL        +L LT T+ AA EM+ R+  ++       DE
Sbjct: 480 VIAGPGTGKTQTLMGRIKHLLERGTRARRILALTFTRKAAEEMNDRMRSMLG-----DDE 534

Query: 96  IL 97
           +L
Sbjct: 535 VL 536


>gi|212704689|ref|ZP_03312817.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC
          29098]
 gi|212671923|gb|EEB32406.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC
          29098]
          Length = 713

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
          V A AGSGKT  +  R+  L      P ++L LT T+ AA EM  R        + LSD 
Sbjct: 25 VVAGAGSGKTRTITYRLSWLADHGVPPESMLLLTFTRKAAQEMLQRA-------AALSDH 77

Query: 96 ILS 98
           LS
Sbjct: 78 ALS 80


>gi|152969548|ref|YP_001334657.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954397|gb|ABR76427.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 684

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           RS  V A AGSGKT +LV R   LL    A    +L L   + AA EM  R+ E +    
Sbjct: 210 RSLLVLAGAGSGKTSVLVARAGWLLARGEAAADQILLLAFGRQAAQEMDERIRERLA--- 266

Query: 91  HLSDEI 96
             SD+I
Sbjct: 267 --SDDI 270


>gi|126741390|ref|ZP_01757064.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6]
 gi|126717526|gb|EBA14254.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6]
          Length = 794

 Score = 35.8 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A AG+GKT  L  R++ LL   +A  + +L +T T  AA EM  RV
Sbjct: 50 AGAGTGKTKALTARIVHLLNTGSARTNEILAVTFTNKAAREMKERV 95


>gi|15836655|ref|NP_297343.1| DNA-dependent helicase II [Xylella fastidiosa 9a5c]
 gi|9104818|gb|AAF82863.1|AE003859_4 DNA helicase II [Xylella fastidiosa 9a5c]
          Length = 728

 Score = 35.8 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
          S  +D ++Q + E + A+       + A AGSGKT +L  R++ L   +  P+ +++ +T
Sbjct: 4  SHVLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVHGVPTHSMMAVT 61

Query: 70 HTKAAAAEMSHRV 82
           T  AA E+  R+
Sbjct: 62 FTNKAAGEIQQRI 74


>gi|330010295|ref|ZP_08306722.1| helicase IV [Klebsiella sp. MS 92-3]
 gi|328534585|gb|EGF61165.1| helicase IV [Klebsiella sp. MS 92-3]
          Length = 684

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           RS  V A AGSGKT +LV R   LL    A    +L L   + AA EM  R+ E +    
Sbjct: 210 RSLLVLAGAGSGKTSVLVARAGWLLARGEAAADQILLLAFGRQAAQEMDERIRERLA--- 266

Query: 91  HLSDEI 96
             SD+I
Sbjct: 267 --SDDI 270


>gi|307108879|gb|EFN57118.1| hypothetical protein CHLNCDRAFT_51440 [Chlorella variabilis]
          Length = 418

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 19 QTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76
          Q   EQ  A + P     V A  GSGKT +LV RV  L+  +    S LL +T T  AA 
Sbjct: 6  QLNEEQRAAVTAPLGPVRVMAGPGSGKTKVLVARVAELIQTHGISSSKLLAVTFTNKAAG 65

Query: 77 EMSHRV 82
          E+  R+
Sbjct: 66 ELQERL 71


>gi|238894018|ref|YP_002918752.1| DNA helicase IV [Klebsiella pneumoniae NTUH-K2044]
 gi|238546334|dbj|BAH62685.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 684

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           RS  V A AGSGKT +LV R   LL    A    +L L   + AA EM  R+ E +    
Sbjct: 210 RSLLVLAGAGSGKTSVLVARAGWLLARGEAAADQILLLAFGRQAAQEMDERIRERLA--- 266

Query: 91  HLSDEI 96
             SD+I
Sbjct: 267 --SDDI 270


>gi|301155111|emb|CBW14574.1| DNA helicase and single-stranded DNA-dependent ATPase
          [Haemophilus parainfluenzae T3T1]
          Length = 670

 Score = 35.4 bits (80), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVIINKIAHLIEHCGYLPKQIAAVTFTNKAAREMKERV 67


>gi|95930575|ref|ZP_01313310.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95133410|gb|EAT15074.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 747

 Score = 35.4 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT  L  RV+ L+     P   +L +T T  AA EM  R+
Sbjct: 25 ILAGAGSGKTSTLTGRVIHLIRQQGVPPWRILAVTFTNKAAKEMKERI 72


>gi|299820618|ref|ZP_07052508.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601]
 gi|299818113|gb|EFI85347.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601]
          Length = 730

 Score = 35.4 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
          L+     EQ  A + T     + A AGSGKT +L  R+  L+      P  +L +T T  
Sbjct: 8  LVHGLNPEQRKAVETTEGPLLIMAGAGSGKTRVLTHRIAYLVREKGVSPYNILAITFTNK 67

Query: 74 AAAEMSHRV 82
          AA EM  RV
Sbjct: 68 AAREMKARV 76


>gi|150015241|ref|YP_001307495.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149901706|gb|ABR32539.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 755

 Score = 35.4 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 39/141 (27%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGKT +L  R+  ++   +  P ++L +T T  AA EM  RV  +I        
Sbjct: 24  ILAGAGSGKTRVLTHRMAHMIEDLDIAPYSILAITFTNKAAKEMKDRVKALIG------- 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E    + + T H+ C  I+++   +    
Sbjct: 77  -------------------------------ERAENMWISTFHSTCVRILRREIDKIGYK 105

Query: 155 SHFAIADEEQSKKLIEEAKKS 175
           S F I D    K L++E  K+
Sbjct: 106 SSFTIYDSSDQKTLVKECMKT 126


>gi|94497982|ref|ZP_01304546.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94422565|gb|EAT07602.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 758

 Score = 35.4 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          V A AG+GKT  L  R+  L+    A PS +L +T T  AA EM  RV  +I
Sbjct: 34 VLAGAGTGKTAALTARLAHLVATRRAWPSEILAVTFTNKAAREMRARVGAMI 85


>gi|148549739|ref|YP_001269841.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida F1]
 gi|148513797|gb|ABQ80657.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
           putida F1]
          Length = 1224

 Score = 35.4 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 20  TKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLT 69
           T+   L  S P   S  + A+AG+GKT  +    LRL+L +           P  +L +T
Sbjct: 2   TQDRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVT 61

Query: 70  HTKAAAAEMSHRV-LEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILE 126
            T AA  E+  R+   +  A      E+  A+  + +++   P ++ +  A  L I + +
Sbjct: 62  FTDAATKELRERIRARLAEAARFFRGELEGADPLLHQLRDDYPQETWLRCAGRLEIAV-Q 120

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEA 151
                 V TIH +C+ ++++   ++
Sbjct: 121 WMDEAAVSTIHGWCQRMLREHAFDS 145


>gi|262067581|ref|ZP_06027193.1| ATP-dependent nuclease subunit A [Fusobacterium periodonticum ATCC
           33693]
 gi|291378696|gb|EFE86214.1| ATP-dependent nuclease subunit A [Fusobacterium periodonticum ATCC
           33693]
          Length = 1043

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 36/220 (16%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHP---STLLCLTHTKAAAAEMSHRVL 83
           +  ++  VSA+AG+GKT+ L    +  L   +NA       +L +T T+ A AE+   +L
Sbjct: 2   NKIKNLVVSASAGTGKTYRLSLEYIAALSKKSNAEAVDYKNILVMTFTRKATAEIKEGIL 61

Query: 84  ----EIITAWSHLSDEILSAEITKIQGKK------------------------PNKSDMS 115
               E I  +    +  LS   T +  K                          NK  + 
Sbjct: 62  KKLSEFIEIYDICKNSKLSVRDTILNNKNLDEKKKNNYINLIESIEKIEEDLTVNKEFLE 121

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              ++   I+     LK+ TI AF   I +   +       +++ DEE++    ++  +S
Sbjct: 122 NLANIYKDIIRNKEKLKIYTIDAFLNIIFKNIVVNLMKIKSYSLIDEEENSVYYKKILES 181

Query: 176 TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
              +  L N  + K  F E  E + D+ I ++I ++IS+R
Sbjct: 182 IFTNKKLFN--DFKNFFTENSEKNIDKYI-SIIGNLISSR 218


>gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Herminiimonas arsenicoxydans]
 gi|133739093|emb|CAL62142.1| putative DNA helicase II [Herminiimonas arsenicoxydans]
          Length = 588

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          QL A +      V A  GSGKT  LV ++ R+L  +   P  + C+T+++  A E++ R+
Sbjct: 7  QLAAYNSQGHCVVLAGPGSGKTKTLVLKLARILAEDVEAPRGVACITYSQECARELARRI 66


>gi|227530244|ref|ZP_03960293.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC
          49540]
 gi|227349833|gb|EEJ40124.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC
          49540]
          Length = 761

 Score = 35.4 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          +D ++  ++E +L ++      V A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 11 LDGMNDKQTEAVLTTEG--PLLVMAGAGSGKTRVLTHRIAYLIEEKGVLPWNILAITFTN 68

Query: 73 AAAAEMSHRVLEII 86
           AA EM  RV +++
Sbjct: 69 KAAREMQERVGKLL 82


>gi|227550046|ref|ZP_03980095.1| superfamily I ATP-dependent helicase [Corynebacterium
          lipophiloflavum DSM 44291]
 gi|227077892|gb|EEI15855.1| superfamily I ATP-dependent helicase [Corynebacterium
          lipophiloflavum DSM 44291]
          Length = 682

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          IDL      +++ A+ P     + A AG+GKT  +  R+  L+  +   P  +L +T T+
Sbjct: 3  IDLSLLDDDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQSVVSPHKVLAVTFTQ 62

Query: 73 AAAAEMSHRV 82
           AA EM  R+
Sbjct: 63 RAAGEMRDRL 72


>gi|149012920|ref|ZP_01833833.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP19-BS75]
 gi|147763209|gb|EDK70149.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
          SP19-BS75]
          Length = 218

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 36 VSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAAEMSHR 81
          + A AGSGKT +L  R+  L+   L N  P  +L +T T  AA EM  R
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVN--PWNILAITFTNKAAREMKER 71


>gi|325576766|ref|ZP_08147381.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC
          33392]
 gi|325160972|gb|EGC73090.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC
          33392]
          Length = 670

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+    + P  +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVIINKIAHLIEHCGYLPKQIAAVTFTNKAAREMKERV 67


>gi|225376675|ref|ZP_03753896.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans
          DSM 16841]
 gi|225211558|gb|EEG93912.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans
          DSM 16841]
          Length = 760

 Score = 35.4 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86
          + A AGSGKT +L  R   L+     +P  ++ +T T  AA EM  R+ +++
Sbjct: 28 ILAGAGSGKTRVLTHRTAYLIEEKGVNPYNIMAITFTNKAAGEMRERIDQLV 79


>gi|157377279|ref|YP_001475879.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3]
 gi|157319653|gb|ABV38751.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3]
          Length = 670

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEI---- 85
           T    V A AGSGKT +++ ++  L+    + + T+  +T T  AA EM  RV +     
Sbjct: 15  TGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARTIAAVTFTNKAAREMKERVAQSMGRK 74

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKS 112
                 I+ +  L  EI+  E  K+ G KP  S
Sbjct: 75  EARGLWISTFHTLGLEIIKRE-HKVVGLKPGFS 106


>gi|260881254|ref|ZP_05404011.2| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544]
 gi|260848967|gb|EEX68974.1| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544]
          Length = 745

 Score = 35.4 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
           V A AGSGKT  L  R   L+      P  +LC+T T  AA EM  R+
Sbjct: 53  VLAGAGSGKTRALTHRFAYLVEELGILPGNILCVTFTNKAATEMRSRI 100


>gi|228477389|ref|ZP_04062025.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126]
 gi|228250824|gb|EEK10012.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126]
          Length = 769

 Score = 35.4 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A S
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAMALNPATS 80


>gi|254453679|ref|ZP_05067116.1| UvrD/REP helicase [Octadecabacter antarcticus 238]
 gi|198268085|gb|EDY92355.1| UvrD/REP helicase [Octadecabacter antarcticus 238]
          Length = 837

 Score = 35.4 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           A AG+GKT  L  R+  L+    A P  +L +T T  AA EM +R+
Sbjct: 59  AGAGTGKTKALTCRIAHLMATGGARPDEILAVTFTNKAAREMMNRI 104


>gi|312862860|ref|ZP_07723100.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis
          F0396]
 gi|311101720|gb|EFQ59923.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis
          F0396]
          Length = 769

 Score = 35.4 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A S
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAMALNPATS 80


>gi|297583056|ref|YP_003698836.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10]
 gi|297141513|gb|ADH98270.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10]
          Length = 773

 Score = 35.4 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
          + A AGSGKT +L  R+  L+     P  ++L +T T  AA EM  RV
Sbjct: 52 IMAGAGSGKTRVLTNRIAYLIGEKGVPHWSILAITFTNKAAREMKDRV 99


>gi|70734238|ref|YP_257878.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens Pf-5]
 gi|68348537|gb|AAY96143.1| exodeoxyribonuclease V, beta subunit [Pseudomonas fluorescens Pf-5]
          Length = 1230

 Score = 35.4 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 15/146 (10%)

Query: 20  TKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCL 68
           T    L  + P R S  + A+AG+GKT  +    LRL+L +            P  +L +
Sbjct: 2   TAQAPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEAAGFGRELLPPQILVV 61

Query: 69  THTKAAAAEMSHRV-LEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITIL 125
           T T AA  E+  R+   +  A     DE  + +  I +++ + P +   + A  L I   
Sbjct: 62  TFTDAATKELRERIRTRLAEAARFFRDETSAPDGLIVELREQYPVEQWAACANRLDIAA- 120

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEA 151
           +      V TIH++C+ ++++   ++
Sbjct: 121 QWMDEAAVSTIHSWCQRMLREHAFDS 146


>gi|325206373|gb|ADZ01826.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           M04-240196]
          Length = 1204

 Score = 35.4 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 26/159 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130
           +   + L D  LS  I     +  +K D             + R  LI  L+   G    
Sbjct: 81  SKEIAKLGDGALSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|322698728|gb|EFY90496.1| putative ATP-dependent DNA helicase [Metarhizium acridum CQMa
          102]
          Length = 989

 Score = 35.4 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
          Q+    ++ +++ +   + ++ PT +  + A  GSGKTH L  RV+ L+      P+ ++
Sbjct: 4  QQPETILNSLNEAQRRAVTSNSPTVA--ILAGPGSGKTHTLTSRVVWLVQHVGYQPADVI 61

Query: 67 CLTHTKAAAAEMSHRV 82
            T T  AA EM  R+
Sbjct: 62 VATFTVKAAREMKGRI 77


>gi|330469972|ref|YP_004407715.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812943|gb|AEB47115.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 712

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSA---------NAGSGKTHILVQRV-LRLLLANAHPST 64
          ++  + SE++LA  DP + + V+A          AG+GKT  +  R+  R L        
Sbjct: 1  MVVNSPSERVLAGLDPEQRSAVTAPAGPVCVLAGAGTGKTRAVTSRIAYRALTGEISARH 60

Query: 65 LLCLTHTKAAAAEMSHRVLEIITA 88
          +L +T T  AAAE+ HR+ ++  A
Sbjct: 61 VLAVTFTARAAAELRHRLAQLGVA 84


>gi|326559747|gb|EGE10157.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 7169]
          Length = 689

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
          +S+    QL A + T+    V A AGSGKT ++ Q++  L+     P+  +  +T T  A
Sbjct: 16 MSKLNPRQLEALNYTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75

Query: 75 AAEMSHRVLEIIT 87
          A EM  RV +I++
Sbjct: 76 AREMKSRVQKILS 88


>gi|261345272|ref|ZP_05972916.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541]
 gi|282566971|gb|EFB72506.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541]
          Length = 675

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  ++  L+      P  +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVITNKIAHLIRHCGYQPRQIAAVTFTNKAAREMKERV 67


>gi|88808889|ref|ZP_01124398.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805]
 gi|88786831|gb|EAR17989.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805]
          Length = 1229

 Score = 35.4 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 34/158 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  L   V+RL++        LL +T T+AAA E+  R+ + +       D
Sbjct: 26  LEASAGTGKTFALAHLVMRLVVERELKLDALLVVTFTEAAADELRDRIGKRL-------D 78

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPG---------------------GLKV 133
             L   +   QG   +    + +  +L+  LE  G                        +
Sbjct: 79  GALQGLLRLEQG---DDGGGTASDAVLLEWLEEHGRDRAGRRNKASLLLEALEALERADI 135

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            TIH FC   +++  LE+  +   ++ D+ Q+  L+EE
Sbjct: 136 TTIHGFCRRTLRRQALESGRSLDLSLDDDPQT--LVEE 171


>gi|322516818|ref|ZP_08069720.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC
          49124]
 gi|322124655|gb|EFX96119.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC
          49124]
          Length = 773

 Score = 35.4 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A S
Sbjct: 29 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAMALNPATS 84


>gi|320593539|gb|EFX05948.1| ATP-dependent DNA helicase [Grosmannia clavigera kw1407]
          Length = 1099

 Score = 35.4 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
           + A  GSGKTH L  RV+ L+ A  + P  ++  T T  AA EM  R+ +++
Sbjct: 94  ILAGPGSGKTHTLTSRVVWLVDALGYRPQDVIVATFTVKAAREMKERIGKVL 145


>gi|51891749|ref|YP_074440.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51855438|dbj|BAD39596.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 672

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           V A  GSGKT ++ +R+  L+ +    P +LL +T TKAAA E+
Sbjct: 78  VVAGPGSGKTTVIARRIGYLIAVRGVDPRSLLVITFTKAAADEL 121


>gi|171779530|ref|ZP_02920494.1| hypothetical protein STRINF_01375 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282147|gb|EDT47578.1| hypothetical protein STRINF_01375 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 783

 Score = 35.4 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +
Sbjct: 38 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERAMAL 88


>gi|152965140|ref|YP_001360924.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151359657|gb|ABS02660.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1128

 Score = 35.4 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMS 79
          P     V A AGSGKT  +  RV+  L+AN    P  +L LT T+ AA E++
Sbjct: 30 PVEPVLVVAGAGSGKTETMSSRVV-WLVANELVAPEDVLGLTFTRKAAGELA 80


>gi|33151764|ref|NP_873117.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
 gi|33147985|gb|AAP95506.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
          Length = 672

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT +++ ++  L+   N  P  +  +T T  AA E+  RV
Sbjct: 20 VLAGAGSGKTRVIINKIAYLIAHCNYTPKQIAAVTFTNKAAREIRERV 67


>gi|153948778|ref|YP_001399172.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
          31758]
 gi|152960273|gb|ABS47734.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
          31758]
          Length = 673

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          T    V A AGSGKT ++  ++  L+    + P  +  +T T  AA EM  RV + +
Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKYIAAVTFTNKAAREMKERVAQTL 71


>gi|37528484|ref|NP_931829.1| ATP-dependent DNA helicase Rep [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36787922|emb|CAE17039.1| ATP-dependent DNA helicase [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 675

 Score = 35.0 bits (79), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          T    V A AGSGKT ++  ++  L+    + P  +  +T T  AA EM  RV + +
Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRTCGYQPRHIAAVTFTNKAAREMKERVAQTL 71


>gi|326565010|gb|EGE15210.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 103P14B1]
 gi|326574116|gb|EGE24064.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 101P30B1]
          Length = 689

 Score = 35.0 bits (79), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
          +S+    QL A + T+    V A AGSGKT ++ Q++  L+     P+  +  +T T  A
Sbjct: 16 MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75

Query: 75 AAEMSHRVLEIIT 87
          A EM  RV +I++
Sbjct: 76 AREMKSRVQKILS 88


>gi|301156242|emb|CBW15713.1| exonuclease V (RecBCD complex), beta subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 1226

 Score = 35.0 bits (79), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  ++  ++ E +T
Sbjct: 21  IEASAGTGKTYTIGSIYLRLLLQAGENRFSRPLNVEEILVVTFTEMATEDLKRKIRERLT 80

Query: 88  A-------WSHLSDE-ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           A       +    D+ I + E   +    P   D+  A   L    +      + TIH F
Sbjct: 81  AAISVFSEYYETKDKAIFTGEHQFLAELLPYLKDIPTALRRLKLAEQNLDLASIYTIHGF 140

Query: 140 CEAIMQQFPLEANITSHFAI 159
           C  ++ Q    + +  HF +
Sbjct: 141 CRRMLMQHAFNSGV--HFNL 158


>gi|296113478|ref|YP_003627416.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4]
 gi|295921172|gb|ADG61523.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4]
 gi|326559400|gb|EGE09825.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 46P47B1]
 gi|326566037|gb|EGE16197.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 12P80B1]
 gi|326568114|gb|EGE18198.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC7]
 gi|326568531|gb|EGE18603.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC1]
 gi|326572434|gb|EGE22426.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC8]
 gi|326572519|gb|EGE22508.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis CO72]
          Length = 689

 Score = 35.0 bits (79), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
          +S+    QL A + T+    V A AGSGKT ++ Q++  L+     P+  +  +T T  A
Sbjct: 16 MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75

Query: 75 AAEMSHRVLEIIT 87
          A EM  RV +I++
Sbjct: 76 AREMKSRVQKILS 88


>gi|291518979|emb|CBK74200.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
           16/4]
          Length = 770

 Score = 35.0 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAA 76
           + T  E+++ +   + ++V+A  G+GKT+ L++++  ++    A P  +L L  T AA  
Sbjct: 165 ADTTQEEIIEAPLNQMSFVNAGPGTGKTYTLMRKITHMVENLEADPEGILVLCFTNAAVN 224

Query: 77  EMSHRV 82
           E+  R+
Sbjct: 225 EIKARI 230


>gi|326576083|gb|EGE26002.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis O35E]
          Length = 689

 Score = 35.0 bits (79), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
          +S+    QL A + T+    V A AGSGKT ++ Q++  L+     P+  +  +T T  A
Sbjct: 16 MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75

Query: 75 AAEMSHRVLEIIT 87
          A EM  RV +I++
Sbjct: 76 AREMKSRVQKILS 88


>gi|194291146|ref|YP_002007053.1| DNA helicase and single-stranded DNA-dependent atpase
          [Cupriavidus taiwanensis LMG 19424]
 gi|193224981|emb|CAQ70992.1| DNA helicase and single-stranded DNA-dependent ATPase
          [Cupriavidus taiwanensis LMG 19424]
          Length = 698

 Score = 35.0 bits (79), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          V A AGSGKT ++ Q++  L+      P  +  +T T  AA EM  R+ +++  
Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEDKGFEPRHIAAVTFTNKAAKEMQERIAKLMEG 75


>gi|241204304|ref|YP_002975400.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858194|gb|ACS55861.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 972

 Score = 35.0 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPST 64
           ++++  +TI+    T  ++L       +  V A AGSGKT ++  +   L  A    P  
Sbjct: 189 TWKDFFDTIESKPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKASYLAKAGIRQPEE 248

Query: 65  LLCLTHTKAAAAEMSHRV 82
           +L L   K AA EMS RV
Sbjct: 249 ILLLAFAKNAAEEMSERV 266


>gi|219883159|ref|YP_002478321.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
 gi|219867284|gb|ACL47622.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
          Length = 812

 Score = 35.0 bits (79), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 13/86 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +YH+ F+     I  I    + Q      ++ A V   AGSGKTH++++    LL +N  
Sbjct: 191 VYHSEFESLKSIIGDIKNDPNHQ------SKGAVVIGEAGSGKTHLMMRLARELLRSN-- 242

Query: 62  PSTLLCLTHTKAAAAEMSH---RVLE 84
              LL + H   A + + H   R+LE
Sbjct: 243 --RLLFIRHPNHADSVLYHTYARILE 266


>gi|284005618|ref|YP_003391438.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
 gi|283820802|gb|ADB42639.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
          Length = 966

 Score = 35.0 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 25/47 (53%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          + A  GSGKT  LV R++RL+        L   T T+ AA E+  RV
Sbjct: 25 IIAGPGSGKTKTLVDRIVRLIQLGTPAENLFVATFTEKAAKELVTRV 71


>gi|117619432|ref|YP_858409.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560839|gb|ABK37787.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1205

 Score = 35.0 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 32/141 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN----------AHPST---------LLCLTHTKAAAA 76
           + A+AG+GKT+ +    LRLLL +            PS          +L +T T+AA A
Sbjct: 18  IEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAATA 77

Query: 77  EMSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           E+  R+        +        D +LS  + +++       D   A   L+        
Sbjct: 78  ELRGRIRGRIHEARLAFMRGESKDALLSQLLAEVE-------DHELAARRLLAAERQMDE 130

Query: 131 LKVQTIHAFCEAIMQQFPLEA 151
             V TIH FC+ +++Q   E+
Sbjct: 131 AAVFTIHGFCQRMLKQNAFES 151


>gi|306831468|ref|ZP_07464626.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus
          subsp. gallolyticus TX20005]
 gi|304426253|gb|EFM29367.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus
          subsp. gallolyticus TX20005]
          Length = 771

 Score = 35.0 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERAMAL 75


>gi|306833580|ref|ZP_07466707.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
 gi|304424350|gb|EFM27489.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
          Length = 771

 Score = 35.0 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERAMAL 75


>gi|303237389|ref|ZP_07323959.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302482776|gb|EFL45801.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 1112

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    + LL+ + +    +L +T T  A  EM  R+L  +     ++  +
Sbjct: 13  ASAGSGKTFTLAVEYISLLVKDPNNYRQILAVTFTNKATQEMKMRILSQLFG---IAKGL 69

Query: 97  LSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            S++    Q K  NK+ +      S A   L  ++      ++ TI AF + I++    E
Sbjct: 70  KSSDAYLQQVK--NKTGLNEATIKSNATTALTLLIHKYNEFRIHTIDAFFQQILRNLAHE 127

Query: 151 ANITSHFAI 159
             +T++  +
Sbjct: 128 LGLTANLKV 136


>gi|288905388|ref|YP_003430610.1| ATP-dependent DNA helicase (DNA helicase II) [Streptococcus
          gallolyticus UCN34]
 gi|325978377|ref|YP_004288093.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
          gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732114|emb|CBI13679.1| Putative ATP-dependent DNA helicase (DNA helicase II)
          [Streptococcus gallolyticus UCN34]
 gi|325178305|emb|CBZ48349.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
          gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 771

 Score = 35.0 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERAMAL 75


>gi|255319912|ref|ZP_05361113.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82]
 gi|262379193|ref|ZP_06072349.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens
          SH164]
 gi|255303045|gb|EET82261.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82]
 gi|262298650|gb|EEY86563.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens
          SH164]
          Length = 679

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 18 SQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75
          SQ  ++QL A   T+    V A AGSGKT ++ +++  L+     P+  +  +T T  AA
Sbjct: 5  SQLNNKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLIQQCRIPAHRITAMTFTNKAA 64

Query: 76 AEMSHRVLEIIT 87
           EM  RV ++++
Sbjct: 65 REMKERVGKLLS 76


>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
 gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
          Length = 906

 Score = 35.0 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82
          V A+ G GKT IL +RV +   A+AH      +LCLT T  AA  M  RV
Sbjct: 24 VLASPGCGKTQILAERVAQ---AHAHGVDFGDMLCLTFTNRAARSMQERV 70


>gi|323697653|ref|ZP_08109565.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323457585|gb|EGB13450.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1049

 Score = 35.0 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 15/68 (22%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC---------------LTHTKAAAAEMSH 80
          V A+AGSGKT+ L +R L LL      +  +C               +T T  AAAEM  
Sbjct: 7  VKASAGSGKTYQLTRRFLALLDRAGEDTPFVCTNRPGRGFSWPEIMAVTFTNKAAAEMKE 66

Query: 81 RVLEIITA 88
          RV+  + A
Sbjct: 67 RVVTGLKA 74


>gi|187477915|ref|YP_785939.1| DNA helicase II [Bordetella avium 197N]
 gi|115422501|emb|CAJ49026.1| DNA helicase II [Bordetella avium 197N]
          Length = 750

 Score = 35.0 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          A V A AGSGKT +L  R+  L+    A P  +L +T T  AA EM  R+
Sbjct: 21 ALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGILAVTFTNKAAREMLMRM 70


>gi|50084109|ref|YP_045619.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
 gi|49530085|emb|CAG67797.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
          Length = 679

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87
          V A AGSGKT ++ Q++  L+     P+  +  +T T  AA EM  RV ++++
Sbjct: 24 VLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAAREMKERVAKLLS 76


>gi|46128055|ref|XP_388581.1| hypothetical protein FG08405.1 [Gibberella zeae PH-1]
          Length = 1060

 Score = 35.0 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
          L S  ++++   +    +  + A  GSGKTH L  RV+ L+    + PS ++  T T  A
Sbjct: 10 LQSLNEAQRRAVTSTASTVAILAGPGSGKTHTLTSRVVWLIQRVGYRPSDVIVATFTVKA 69

Query: 75 AAEMSHRV 82
          A EM  R+
Sbjct: 70 AREMKERI 77


>gi|254292798|ref|YP_003058821.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
 gi|254041329|gb|ACT58124.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
          Length = 793

 Score = 35.0 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           D +    +EQ  A + T  A  V A AG+GKT +L  R+  +L    A  S  L +T T 
Sbjct: 29  DYLDGLNAEQRDAVETTDGALLVLAGAGTGKTRVLTTRLAHILNQRKAWASQTLTVTFTN 88

Query: 73  AAAAEMSHRVLEII 86
            AA EM  R  ++I
Sbjct: 89  KAAREMRERAEKLI 102


>gi|221069391|ref|ZP_03545496.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1]
 gi|220714414|gb|EED69782.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1]
          Length = 1270

 Score = 35.0 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 15/149 (10%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVL 83
           S  + A+AG+GKT  +    LRL+L +           P  +L +T T+AA  E+S R+ 
Sbjct: 25  SRLIEASAGTGKTWTIAALYLRLVLGHGAENGFARALMPPDILVMTFTRAATRELSDRIR 84

Query: 84  E-IITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + +I A      E   A     +  ++      ++   A   L    +      + TI A
Sbjct: 85  DRLIEAVQCFRGEAEPAAHDSFLRDLRDAYAEGTERDTAAWRLDMAAQCMDDAAIHTIDA 144

Query: 139 FCEAIMQQFPLEA-NITSHFAIADEEQSK 166
           +C+ ++++   ++ N+      ADE Q +
Sbjct: 145 WCQRMLREHAFDSGNLFDETLEADESQRQ 173


>gi|78484473|ref|YP_390398.1| DNA-dependent helicase II [Thiomicrospira crunogena XCL-2]
 gi|78362759|gb|ABB40724.1| ATP-dependent DNA helicase UvrD [Thiomicrospira crunogena XCL-2]
          Length = 741

 Score = 35.0 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
          + A + A AGSGKT +LV R+  L       +  +L +T T  AA+EM  RV  +I
Sbjct: 23 QHALILAGAGSGKTRVLVHRIAWLTQVMGFSAYNILAVTFTNKAASEMRARVEALI 78


>gi|331004225|ref|ZP_08327704.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411498|gb|EGG90909.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 735

 Score = 35.0 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L+ R+  L+   +  P  ++ +T T  AA EM  R+ ++I
Sbjct: 27 AGAGSGKTGVLMHRIAYLIEEKHIDPYNIMAITFTNKAAKEMKERIGKLI 76


>gi|2462092|emb|CAA72103.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 10987]
          Length = 254

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 22/115 (19%)

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           LA      LL +T T AAA EM +R+ E +                K+   +P    + K
Sbjct: 1   LACLQVDRLLVVTFTNAAAQEMKNRIGEALE---------------KVLIDEPGSQHIRK 45

Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
              LL           + TIH+FC  +++ +    ++   F IA++ +++ L EE
Sbjct: 46  QLSLL-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEE 93


>gi|121998487|ref|YP_001003274.1| UvrD/REP helicase [Halorhodospira halophila SL1]
 gi|121589892|gb|ABM62472.1| UvrD/REP helicase [Halorhodospira halophila SL1]
          Length = 695

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
          T  ++ +   P   A VSA AGSGKT  LV RV+ LL   A  + +  L   ++A  +  
Sbjct: 4  TPEQRQVIEHPGGHARVSAAAGSGKTATLVARVVELLRRGADSARIRVLMFNRSAREDFE 63

Query: 80 HRV 82
           R+
Sbjct: 64 RRL 66


>gi|302524415|ref|ZP_07276757.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
 gi|302433310|gb|EFL05126.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
          Length = 1124

 Score = 35.0 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLL 66
          E ++ + L   T  +  + + P   + V A AG+GKT  +  RV+  L+AN    P  +L
Sbjct: 14 EIADALGLHRPTPEQATVIASPVEPSLVVAGAGAGKTETMAARVV-WLVANGIVSPERVL 72

Query: 67 CLTHTKAAAAEM 78
           LT T+ AA ++
Sbjct: 73 GLTFTRKAARQL 84


>gi|238021168|ref|ZP_04601594.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC
          51147]
 gi|237868148|gb|EEP69154.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC
          51147]
          Length = 666

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 35 WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
          +V A AGSGKT ++ +++  ++  A   P  +  +T T  AA EM  RV
Sbjct: 19 FVLAGAGSGKTRVITEKIAYMITQAGYKPHHIAAITFTNKAAKEMQERV 67


>gi|226326730|ref|ZP_03802248.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198]
 gi|225204951|gb|EEG87305.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198]
          Length = 519

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86
          V A AGSGKT ++  ++  L+    +P+  +  +T T  AA EM  RV + +
Sbjct: 26 VLAGAGSGKTRVITHKIAHLIRQCQYPAKQIAAVTFTNKAAREMKERVAQTL 77


>gi|261401620|ref|ZP_05987745.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC
           23970]
 gi|269208325|gb|EEZ74780.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC
           23970]
          Length = 1204

 Score = 35.0 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 24/158 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R       VL+++ 
Sbjct: 21  IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDNVLQVLE 80

Query: 88  A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131
           +   + L D+ LS  I     +             ++   + R  LI  L+   G     
Sbjct: 81  SKEIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNA 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + TIH FC+ I++ +           + +E+  + L+
Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|325298044|ref|YP_004257961.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
 gi|324317597|gb|ADY35488.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
          Length = 1071

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 24/139 (17%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLE--------II 86
           A+AGSGKT  L    ++ L+ +  P+    +L +T T  A AEM +R+LE        + 
Sbjct: 12  ASAGSGKTFTLALHYIKQLVED--PTAYRHILAVTFTNKATAEMKNRILEQLYGLGYGLP 69

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-- 144
           T+ S+L +   +  ++  + ++        A   L  I+      +++TI +F +A++  
Sbjct: 70  TSKSYLQELKKTCALSDTEIRQ-------AAIRALHNIIHDYSRFRIETIDSFFQAVLRN 122

Query: 145 --QQFPLEANITSHFAIAD 161
             ++  L AN+T     AD
Sbjct: 123 LARELELGANMTIELNNAD 141


>gi|116627783|ref|YP_820402.1| superfamily I DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101060|gb|ABJ66206.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus
          LMD-9]
          Length = 770

 Score = 35.0 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A S
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAVALNPATS 80


>gi|83643128|ref|YP_431563.1| exodeoxyribonuclease V subunit beta [Hahella chejuensis KCTC 2396]
 gi|83631171|gb|ABC27138.1| exodeoxyribonuclease V, beta subunit [Hahella chejuensis KCTC 2396]
          Length = 1181

 Score = 35.0 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 11/146 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM----SHRVLEIITAWS 90
           + A+AG+GKT+ +    LRLLL        +L +T T+AA  E+      R+ E++    
Sbjct: 17  IEASAGTGKTYTITTLYLRLLLERQLDVRQILVVTFTRAATEELRTRIRQRIREVMQTLQ 76

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +  ++  +   +  + N   ++  +  L+ + E      + TIH FC+  +Q    E
Sbjct: 77  APPETDIAEWLQPWRDPERNGDALALLQQALLNMDEA----SIFTIHGFCQRALQDNAFE 132

Query: 151 ANITSHFAIADEEQSKKLIEEAKKST 176
           + +   F +  +E    L+++A + T
Sbjct: 133 SGLL--FDLRLQEDLGPLLQQAAEDT 156


>gi|312278340|gb|ADQ62997.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus ND03]
          Length = 770

 Score = 35.0 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R + +  A S
Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAVALNPATS 80


>gi|145589895|ref|YP_001156492.1| UvrD/REP helicase [Polynucleobacter necessarius subsp.
          asymbioticus QLW-P1DMWA-1]
 gi|145048301|gb|ABP34928.1| ATP-dependent DNA helicase UvrD [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
          Length = 787

 Score = 35.0 bits (79), Expect = 9.7,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
          +SA + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  R+
Sbjct: 29 QSALILAGAGSGKTRVLTTRIAWLIQTGQVSPIGVLAVTFTNKAAKEMMVRL 80


>gi|332159790|ref|YP_004296367.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325664020|gb|ADZ40664.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 674

 Score = 35.0 bits (79), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          T    V A AGSGKT ++  ++  L+    + P  +  +T T  AA EM  RV + +
Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREMKERVAQTL 71


>gi|123440560|ref|YP_001004554.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122087521|emb|CAL10302.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
          enterocolitica 8081]
          Length = 674

 Score = 35.0 bits (79), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          T    V A AGSGKT ++  ++  L+    + P  +  +T T  AA EM  RV + +
Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREMKERVAQTL 71


Searching..................................................done


Results from round 2




>gi|315122046|ref|YP_004062535.1| double-strand break repair helicase AddA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495448|gb|ADR52047.1| double-strand break repair helicase AddA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 1179

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 161/237 (67%), Positives = 193/237 (81%), Gaps = 1/237 (0%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           M++ NS Q +S   D I+ TKS+QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL+ A
Sbjct: 1   MMHLNSSQNNSNITDWITWTKSQQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLSGA 60

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           +PS LLCLTHTK AAAEMSHRV EIIT WSHLSDE LS EITKIQG K N+SD+SKAR L
Sbjct: 61  NPSALLCLTHTKEAAAEMSHRVFEIITEWSHLSDEQLSVEITKIQGIKQNESDISKARLL 120

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           L+ ILETP GLKVQTIH+FCE++++QFPLE+NIT  F++ D +QSKK IEEAKKST+ASI
Sbjct: 121 LVKILETPNGLKVQTIHSFCESLIRQFPLESNITGDFSVLDGDQSKKPIEEAKKSTIASI 180

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEK 236
           +LD+N E K+AF +IL   ND ++E L+SDIISNR+AL +   F  SY    K+++ 
Sbjct: 181 LLDDNVEFKQAFDDILNSYNDINLEDLMSDIISNRSALNRFSSFAKSYGGEEKLLKD 237


>gi|222147062|ref|YP_002548019.1| ATP-dependant DNA helicase [Agrobacterium vitis S4]
 gi|221734052|gb|ACM35015.1| ATP-dependant DNA helicase [Agrobacterium vitis S4]
          Length = 1182

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 160/224 (71%), Gaps = 3/224 (1%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D I  T  +Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS++LCLT+TKAA
Sbjct: 12  DPIDWTTRQQSLASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGARPSSILCLTYTKAA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EMS+RV + +  W+ LSDE LS  I  I+ + P++  +++AR L    LETPGGLK+Q
Sbjct: 72  ASEMSNRVFDRLAEWATLSDEELSRRIETIERRPPDRMKIAEARRLFARALETPGGLKIQ 131

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A++S L +   +++  L +AF E
Sbjct: 132 TIHAFCEALLHQFPLEANVAGHFSVLDDRAASVLLADARRSLLTATAAEDDANLAEAFAE 191

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +L + ++  +E L+SDI+SNR A++    F +   R+  +E +L
Sbjct: 192 VLSLGDEFGLENLLSDIVSNRHAVR---GFLAVARRKGGVESAL 232


>gi|222084227|ref|YP_002542753.1| double-strand break repair helicase AddA [Agrobacterium radiobacter
           K84]
 gi|221721675|gb|ACM24831.1| double-strand break repair helicase AddA [Agrobacterium radiobacter
           K84]
          Length = 1188

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 161/224 (71%), Gaps = 3/224 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 22  IGWTTVQQSIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 81

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV + + AW+ LSDE L A I +I+G +P+   +++AR L    LETPGGLK+QTI
Sbjct: 82  EMSNRVFDRLAAWATLSDEELKARIAEIEGAEPDLFKLAEARRLFAKALETPGGLKIQTI 141

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+++A++S LA+     + EL +AF  +L
Sbjct: 142 HAFCEALLHQFPLEANVAGHFSVLDDRAAATLLDDARRSLLAATTPQRDAELAEAFSYVL 201

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240
           ++ ++  +ETL+ DI++ R A++    F +   R+  I+ +L +
Sbjct: 202 DLGDESGLETLLGDIVAKRNAIRR---FTTDAERKGGIDAALLA 242


>gi|209551530|ref|YP_002283447.1| double-strand break repair helicase AddA [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537286|gb|ACI57221.1| double-strand break repair helicase AddA [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 1183

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/203 (51%), Positives = 148/203 (72%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE LS  IT+I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLADWVVLDDEDLSRRITQIEGAAPDGIKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  ++ L+ +A+++ L +   + +  L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAEALLSDARRALLTATAPEGDSTLAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
           ++ ++  +E L+ DI++NR A++
Sbjct: 197 DLGDESGLENLLGDIVANRNAIR 219


>gi|241206969|ref|YP_002978065.1| double-strand break repair helicase AddA [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860859|gb|ACS58526.1| double-strand break repair helicase AddA [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 1183

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 103/203 (50%), Positives = 145/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLL+ A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLSGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE L   IT+I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLAEWVVLDDEDLGRRITQIEGMAPDGLKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   D +  L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAVALLSDARRALLTATAPDEDSALSEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + ++  +E L+ DI++NR A++
Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219


>gi|116249792|ref|YP_765630.1| ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254440|emb|CAK05514.1| putative ATP-dependent UvrD family DNA helicase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1183

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 104/203 (51%), Positives = 146/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLL+ A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLSGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE LS  IT+I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLAEWVVLDDEDLSRRITQIEGMAPDGLKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   D +  L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAVALLSDARRALLTATAPDEDSALAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + ++  +E L+ DI++NR A++
Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219


>gi|159184128|ref|NP_353063.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159139465|gb|AAK85848.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 1185

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 148/203 (72%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T + Q LASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+
Sbjct: 19  IDWTSARQRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 78

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS RV + +  W+ L D  L   IT I+GK P++  +++AR L    LETPGGLK+QTI
Sbjct: 79  EMSSRVFDRLAEWATLPDSDLKDRITTIEGKVPDRIKLAEARRLFAKALETPGGLKIQTI 138

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ EA++S L ++  +++ EL +A   +L
Sbjct: 139 HAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAELVQALAYVL 198

Query: 197 EISNDEDIETLISDIISNRTALK 219
           +++++  +E L+S II+NR+AL+
Sbjct: 199 DLADESGLEALLSAIIANRSALR 221


>gi|86355694|ref|YP_467586.1| nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42]
 gi|45505284|gb|AAS67014.1| AddA [Rhizobium etli]
 gi|86279796|gb|ABC88859.1| probable nuclease/helicase protein, ATP dependent [Rhizobium etli
           CFN 42]
          Length = 1183

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 108/222 (48%), Positives = 151/222 (68%), Gaps = 3/222 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE LS  I +I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLADWVVLDDEDLSRRIMQIEGTAPDALKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +        L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPVEGSALAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            + ++  +E L++DI++NR A++    F +   RR  +E  L
Sbjct: 197 NLGDESGLENLLADIVANRNAIRR---FTTAAERRGGVEAVL 235


>gi|325291476|ref|YP_004277340.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
 gi|325059329|gb|ADY63020.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
          Length = 1185

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 100/203 (49%), Positives = 146/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T   Q LASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+
Sbjct: 19  IDWTSDRQRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 78

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS RV + +  W+ L D  L   +  I+GK P++  +++AR L    LETPGGLK+QTI
Sbjct: 79  EMSSRVFDRLAEWATLPDNDLGDRVAAIEGKMPDRIKLAEARRLFAKALETPGGLKIQTI 138

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ EA++S L ++  + + +L ++   +L
Sbjct: 139 HAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEGDTDLTQSLAYVL 198

Query: 197 EISNDEDIETLISDIISNRTALK 219
           +++++  +E+L++ II+NR+AL+
Sbjct: 199 DLADESGLESLLTAIIANRSALR 221


>gi|218682571|ref|ZP_03530172.1| ATP-dependent UvrD family DNA helicase [Rhizobium etli CIAT 894]
          Length = 415

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 104/203 (51%), Positives = 147/203 (72%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 20  IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 79

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L DE LS  IT+I+G  P+   +++AR L    LETPGGLK+QTI
Sbjct: 80  EMSNRVFERLADWVVLDDEDLSRRITQIEGTAPDAIKLAEARRLFAKALETPGGLKIQTI 139

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   + +  L +AF  +L
Sbjct: 140 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEADSALAEAFAYVL 199

Query: 197 EISNDEDIETLISDIISNRTALK 219
           ++ ++  +E L+ DI++NR A++
Sbjct: 200 DLGDESGLENLLGDIVANRNAIR 222


>gi|254502806|ref|ZP_05114957.1| double-strand break repair helicase AddA [Labrenzia alexandrii
           DFL-11]
 gi|222438877|gb|EEE45556.1| double-strand break repair helicase AddA [Labrenzia alexandrii
           DFL-11]
          Length = 1180

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 131/200 (65%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+  Q LAS P  SAWVSANAGSGKT +L +RV+RLLL    PS +L LT TKAAAAEM+
Sbjct: 19  TRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 78

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +I+  W  + D  L+ E+ +I+G+ P+ + ++ AR L    LETPGGLK+QTIH F
Sbjct: 79  TRVFKILGTWVTMDDADLAKELFEIEGRHPDAARIAMARRLFARALETPGGLKIQTIHGF 138

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CEA++ QFPLEAN+  HF + D+  + +L+ EA+ S L    ++ +    +A   ++++ 
Sbjct: 139 CEALLHQFPLEANVAGHFNVLDDRIAAELMAEARASVLHKAEMEPDSPFGQALASVIDLM 198

Query: 200 NDEDIETLISDIISNRTALK 219
           +D   +  + ++I NR A +
Sbjct: 199 SDGGAQKALDELIQNRDAFR 218


>gi|227823893|ref|YP_002827866.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium
           fredii NGR234]
 gi|227342895|gb|ACP27113.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium
           fredii NGR234]
          Length = 1189

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 99/203 (48%), Positives = 142/203 (69%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T   Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+
Sbjct: 17  LDWTTERQSLASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+R+ E +  W+ L D  L   I  I+GK+P  + + +AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRIFERLAEWATLDDAALEKRIETIEGKRPPLAKIHEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAF EA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L++   +   EL +AF  +L
Sbjct: 137 HAFSEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLSATAAEGETELAEAFATVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
           ++++D  +E L+  I++NR  ++
Sbjct: 197 DLADDTGLEKLLQAIVANRAPIQ 219


>gi|254705105|ref|ZP_05166933.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
           686]
 gi|261755810|ref|ZP_05999519.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
           686]
 gi|261745563|gb|EEY33489.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
           686]
          Length = 1180

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|23502951|ref|NP_699078.1| UvrD/Rep family helicase [Brucella suis 1330]
 gi|161620015|ref|YP_001593902.1| double-strand break repair helicase AddA [Brucella canis ATCC
           23365]
 gi|260567425|ref|ZP_05837895.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|23348986|gb|AAN30993.1| helicase, UvrD/Rep family [Brucella suis 1330]
 gi|161336826|gb|ABX63131.1| double-strand break repair helicase AddA [Brucella canis ATCC
           23365]
 gi|260156943|gb|EEW92023.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
          Length = 1180

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|256370501|ref|YP_003108012.1| double-strand break repair helicase AddA [Brucella microti CCM
           4915]
 gi|256000664|gb|ACU49063.1| double-strand break repair helicase AddA [Brucella microti CCM
           4915]
          Length = 1180

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|254470933|ref|ZP_05084336.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062]
 gi|211960075|gb|EEA95272.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062]
          Length = 1156

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 97/225 (43%), Positives = 147/225 (65%), Gaps = 6/225 (2%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D+ ++T   Q  A+ P  SAWVSANAGSGKT +L +RV+RLLL+   PS +LCLT TKA
Sbjct: 1   MDIPAKTLDSQQRAAHPENSAWVSANAGSGKTFVLARRVVRLLLSGTDPSRILCLTFTKA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM+ RV + +  W+ LSD  L+AEI  I+G+  +   ++ AR L    LETPGGLK+
Sbjct: 61  AAAEMATRVFDSLAKWTQLSDAELAAEIEDIEGRPTSPKQLANARRLFAKALETPGGLKI 120

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           QTIHAFCEA++ QFPLEAN+  HF++ D+  +++L+ EA+ S L    ++   ++  A  
Sbjct: 121 QTIHAFCEALLHQFPLEANVAGHFSVLDDRLAEELLNEARASILHRAEIEPESDIGSALS 180

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++E+  D  +E  +S++IS R A      F+ ++     +E ++
Sbjct: 181 QLIELLPDSGVEKALSELISRRDA------FYRWVAPYGDLESAV 219


>gi|306842786|ref|ZP_07475427.1| double-strand break repair helicase AddA [Brucella sp. BO2]
 gi|306287059|gb|EFM58567.1| double-strand break repair helicase AddA [Brucella sp. BO2]
          Length = 1180

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|148560369|ref|YP_001259904.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840]
 gi|148371626|gb|ABQ61605.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840]
          Length = 1180

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|225853531|ref|YP_002733764.1| double-strand break repair helicase AddA [Brucella melitensis ATCC
           23457]
 gi|254700733|ref|ZP_05162561.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
           513]
 gi|254709079|ref|ZP_05170890.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           B2/94]
 gi|256030604|ref|ZP_05444218.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M292/94/1]
 gi|256045706|ref|ZP_05448584.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256262985|ref|ZP_05465517.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563008|ref|ZP_05833494.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|261316580|ref|ZP_05955777.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           B2/94]
 gi|261751245|ref|ZP_05994954.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
           513]
 gi|265987652|ref|ZP_06100209.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M292/94/1]
 gi|265992127|ref|ZP_06104684.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
           str. Rev.1]
 gi|225641896|gb|ACO01810.1| double-strand break repair helicase AddA [Brucella melitensis ATCC
           23457]
 gi|260153024|gb|EEW88116.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|261295803|gb|EEX99299.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           B2/94]
 gi|261740998|gb|EEY28924.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
           513]
 gi|263003193|gb|EEZ15486.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092858|gb|EEZ17033.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|264659849|gb|EEZ30110.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M292/94/1]
 gi|326410100|gb|ADZ67165.1| double-strand break repair helicase AddA [Brucella melitensis M28]
 gi|326539817|gb|ADZ88032.1| double-strand break repair helicase AddA [Brucella melitensis
           M5-90]
          Length = 1180

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|254694724|ref|ZP_05156552.1| double-strand break repair helicase AddA [Brucella abortus bv. 3
           str. Tulya]
 gi|261215053|ref|ZP_05929334.1| double-strand break repair helicase AddA [Brucella abortus bv. 3
           str. Tulya]
 gi|260916660|gb|EEX83521.1| double-strand break repair helicase AddA [Brucella abortus bv. 3
           str. Tulya]
          Length = 1180

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|294851330|ref|ZP_06792003.1| double-strand break repair helicase AddA [Brucella sp. NVSL
           07-0026]
 gi|294819919|gb|EFG36918.1| double-strand break repair helicase AddA [Brucella sp. NVSL
           07-0026]
          Length = 1180

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|225626478|ref|ZP_03784517.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo]
 gi|256158600|ref|ZP_05456490.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
 gi|256254011|ref|ZP_05459547.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|260169510|ref|ZP_05756321.1| double-strand break repair helicase AddA [Brucella sp. F5/99]
 gi|261221152|ref|ZP_05935433.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|261759038|ref|ZP_06002747.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|265997112|ref|ZP_06109669.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
 gi|225618135|gb|EEH15178.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo]
 gi|260919736|gb|EEX86389.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|261739022|gb|EEY27018.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|262551580|gb|EEZ07570.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
          Length = 1180

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|306837652|ref|ZP_07470521.1| double-strand break repair helicase AddA [Brucella sp. NF 2653]
 gi|306407210|gb|EFM63420.1| double-strand break repair helicase AddA [Brucella sp. NF 2653]
          Length = 1180

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|256060066|ref|ZP_05450248.1| ATP-dependent nuclease subunit A [Brucella neotomae 5K33]
 gi|261324043|ref|ZP_05963240.1| double-strand break repair helicase AddA [Brucella neotomae 5K33]
 gi|261300023|gb|EEY03520.1| double-strand break repair helicase AddA [Brucella neotomae 5K33]
          Length = 1180

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFIRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|306843520|ref|ZP_07476121.1| double-strand break repair helicase AddA [Brucella sp. BO1]
 gi|306276211|gb|EFM57911.1| double-strand break repair helicase AddA [Brucella sp. BO1]
          Length = 1180

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/204 (44%), Positives = 133/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L D  L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDAALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|62290945|ref|YP_222738.1| UvrD/Rep family helicase [Brucella abortus bv. 1 str. 9-941]
 gi|82700856|ref|YP_415430.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308]
 gi|189025157|ref|YP_001935925.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237816450|ref|ZP_04595443.1| double-strand break repair helicase AddA [Brucella abortus str.
           2308 A]
 gi|254690236|ref|ZP_05153490.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|254731267|ref|ZP_05189845.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|256258489|ref|ZP_05464025.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|260546208|ref|ZP_05821948.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260755777|ref|ZP_05868125.1| double-strand break repair helicase AddA [Brucella abortus bv. 6
           str. 870]
 gi|260759000|ref|ZP_05871348.1| double-strand break repair helicase AddA [Brucella abortus bv. 4
           str. 292]
 gi|260884801|ref|ZP_05896415.1| double-strand break repair helicase AddA [Brucella abortus bv. 9
           str. C68]
 gi|297247330|ref|ZP_06931048.1| double-strand break repair helicase AddA [Brucella abortus bv. 5
           str. B3196]
 gi|62197077|gb|AAX75377.1| helicase, UvrD/Rep family [Brucella abortus bv. 1 str. 9-941]
 gi|82616957|emb|CAJ12061.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella
           melitensis biovar Abortus 2308]
 gi|189020729|gb|ACD73451.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237788517|gb|EEP62732.1| double-strand break repair helicase AddA [Brucella abortus str.
           2308 A]
 gi|260096315|gb|EEW80191.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260669318|gb|EEX56258.1| double-strand break repair helicase AddA [Brucella abortus bv. 4
           str. 292]
 gi|260675885|gb|EEX62706.1| double-strand break repair helicase AddA [Brucella abortus bv. 6
           str. 870]
 gi|260874329|gb|EEX81398.1| double-strand break repair helicase AddA [Brucella abortus bv. 9
           str. C68]
 gi|297174499|gb|EFH33846.1| double-strand break repair helicase AddA [Brucella abortus bv. 5
           str. B3196]
          Length = 1180

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 133/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF  +L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|254707379|ref|ZP_05169207.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M163/99/10]
 gi|261314862|ref|ZP_05954059.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M163/99/10]
 gi|261303888|gb|EEY07385.1| double-strand break repair helicase AddA [Brucella pinnipedialis
           M163/99/10]
          Length = 1180

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 133/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF  +L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|327192794|gb|EGE59722.1| putative ATP-dependent exonuclease V protein [Rhizobium etli
           CNPAF512]
          Length = 1183

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 102/203 (50%), Positives = 145/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L D+ LS  I +I+G  P++  +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLADWVVLDDDDLSRRIMQIEGTAPDRIKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   +    L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEEGSALAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + ++  +E L+ DI++NR A++
Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219


>gi|190889666|ref|YP_001976208.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
           domains [Rhizobium etli CIAT 652]
 gi|190694945|gb|ACE89030.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
           domains [Rhizobium etli CIAT 652]
          Length = 1183

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 102/203 (50%), Positives = 145/203 (71%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T  +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+
Sbjct: 17  IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W  L D+ LS  I +I+G  P++  +++AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFERLADWVVLDDDDLSRRIMQIEGTAPDRIKLAEARRLFAKALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +   +    L +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEEGSALAEAFAYVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + ++  +E L+ DI++NR A++
Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219


>gi|163844120|ref|YP_001628524.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445]
 gi|163674843|gb|ABY38954.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445]
          Length = 1180

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/204 (44%), Positives = 133/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WV ANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVPANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|254713494|ref|ZP_05175305.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
 gi|254716150|ref|ZP_05177961.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261217923|ref|ZP_05932204.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261321227|ref|ZP_05960424.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
 gi|260923012|gb|EEX89580.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261293917|gb|EEX97413.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
          Length = 1180

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 135/204 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL +  PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLESTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|150398434|ref|YP_001328901.1| double-strand break repair helicase AddA [Sinorhizobium medicae
           WSM419]
 gi|150029949|gb|ABR62066.1| Double-strand break repair helicase AddA [Sinorhizobium medicae
           WSM419]
          Length = 1189

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 103/203 (50%), Positives = 142/203 (69%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T   Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+
Sbjct: 17  LDWTTERQALASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W+ L D  L   I  I+GK+P    + +AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFEKLAEWATLDDAALEKRIEAIEGKRPATGKIQEARRLFARALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +    N+ EL  AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAANDRELAAAFATVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
           E+++D  +E L++ I++NR  ++
Sbjct: 197 ELADDTGLEKLLAAIVANRAQIQ 219


>gi|17988306|ref|NP_540940.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 1 str.
           16M]
 gi|17984079|gb|AAL53204.1| ATP-dependent nuclease subunit a [Brucella melitensis bv. 1 str.
           16M]
          Length = 1180

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 89/204 (43%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    L+TPGG+K+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARVASARRLFARALKTPGGMKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|209965882|ref|YP_002298797.1| helicase, UvrD [Rhodospirillum centenum SW]
 gi|209959348|gb|ACI99984.1| helicase, UvrD [Rhodospirillum centenum SW]
          Length = 1171

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 128/199 (64%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP  S WV A+AG+GKT +L  RVLRL+LA   P  +LCLT TKAAAAEM++R+ 
Sbjct: 20  QRRAADPEASVWVGASAGTGKTKVLTDRVLRLMLAGTDPGRILCLTFTKAAAAEMANRIA 79

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +++W+   D++L   + ++ G++P++  +  AR L   +L+ PGG+K+QTIHAFC+++
Sbjct: 80  GRLSSWAVAEDDVLVDRLAELTGERPSRDQVVVARRLFARVLDAPGGMKIQTIHAFCQSL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +++FPLEA +  +F + D+  + +L+E+AK++ LA    D +  L  A   +    +++ 
Sbjct: 140 LRRFPLEAGLAPNFEVMDDRTAAELLEQAKQAVLADAQADADGPLGSAVAFLAGAVSEDA 199

Query: 204 IETLISDIISNRTALKLIF 222
              L++++   R  ++ + 
Sbjct: 200 FAELLAELTRERGRVRRLL 218


>gi|254718138|ref|ZP_05179949.1| UvrD/REP helicase [Brucella sp. 83/13]
 gi|265983091|ref|ZP_06095826.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
 gi|264661683|gb|EEZ31944.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
          Length = 325

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|256112426|ref|ZP_05453347.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|265993864|ref|ZP_06106421.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|262764845|gb|EEZ10766.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
          Length = 710

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|307322014|ref|ZP_07601393.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
           AK83]
 gi|306892352|gb|EFN23159.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
           AK83]
          Length = 1189

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/203 (49%), Positives = 143/203 (70%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T   Q LASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+
Sbjct: 17  LDWTTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W+ L D  L   I  I+GK+P  + + +AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +    ++ EL +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAASDGELAEAFATVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
           ++++D  +E L++ I++NR  ++
Sbjct: 197 DLADDTGLEKLLAAIVANRAPIQ 219


>gi|15963787|ref|NP_384140.1| putative ATP-dependent nuclease/helicase protein [Sinorhizobium
           meliloti 1021]
 gi|307310975|ref|ZP_07590620.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
           BL225C]
 gi|15072962|emb|CAC41421.1| ATP-dependent nuclease / helicase [Sinorhizobium meliloti 1021]
 gi|306899655|gb|EFN30282.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
           BL225C]
          Length = 1189

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/203 (49%), Positives = 143/203 (70%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T   Q LASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAA+
Sbjct: 17  LDWTTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS+RV E +  W+ L D  L   I  I+GK+P  + + +AR L    LETPGGLK+QTI
Sbjct: 77  EMSNRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCEA++ QFPLEAN+  HF++ D+  +  L+ +A+++ L +    ++ EL +AF  +L
Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAASDGELAEAFATVL 196

Query: 197 EISNDEDIETLISDIISNRTALK 219
           ++++D  +E L++ I++NR  ++
Sbjct: 197 DLADDTGLEKLLAAIVANRAPIQ 219


>gi|114705059|ref|ZP_01437967.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506]
 gi|114539844|gb|EAU42964.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506]
          Length = 1211

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 93/207 (44%), Positives = 137/207 (66%), Gaps = 5/207 (2%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T  +Q +A+DP  S +VSANAG+GKTH+L +RV+RLLLA   PS +LCLT TKAAAAE
Sbjct: 8   AYTAEQQRIAADPNLSVFVSANAGAGKTHVLTERVIRLLLAGFDPSKILCLTFTKAAAAE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS+RV   + AW+ +  E L+ EI K++G  P    + +AR L    LETPGGLK+QTIH
Sbjct: 68  MSNRVFARLGAWAVMDGEKLADEIAKLEGHTPKPERIDQARQLFARALETPGGLKIQTIH 127

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL-----ASIMLDNNEELKKAF 192
           AFCEAI+ QFPLEAN+  HF + D+ +S+ ++ E ++  +      +   +  +EL++AF
Sbjct: 128 AFCEAILHQFPLEANVAGHFEVLDDGESRLMLGEVRRRLVTGAAALAAGREAADELREAF 187

Query: 193 YEILEISNDEDIETLISDIISNRTALK 219
            E L I  +   + L+++I+  R  ++
Sbjct: 188 AEALAIGGEFGFDGLLTEIVQKRDDIR 214


>gi|260463224|ref|ZP_05811426.1| double-strand break repair helicase AddA [Mesorhizobium
           opportunistum WSM2075]
 gi|259031074|gb|EEW32348.1| double-strand break repair helicase AddA [Mesorhizobium
           opportunistum WSM2075]
          Length = 1166

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/203 (46%), Positives = 135/203 (66%), Gaps = 3/203 (1%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S T + Q  A+DP  SAWVSANAGSGKTH+L QRV+RLLL    PS +LCLT+T+AAAA 
Sbjct: 9   SDTATSQARAADPQNSAWVSANAGSGKTHVLAQRVIRLLLNGTDPSKILCLTYTRAAAAN 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS+RV   ++ W+ L D  L+A I  ++G++P++  M +AR L    LETPGGLK+QTIH
Sbjct: 69  MSNRVFSTLSEWTSLGDADLAARIEALEGRRPDRDTMRRARRLFAEALETPGGLKIQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE+++ QFPLEANI SHF + D +    L   A++  +++     + +L +AF  +LE
Sbjct: 129 AFCESVLHQFPLEANIPSHFEMLDSQMEASLFAAARREMISAA---GDADLTEAFATVLE 185

Query: 198 ISNDEDIETLISDIISNRTALKL 220
              +  ++ L+ +I+  R  L+ 
Sbjct: 186 RGGEAGLDALLGEIVRKRDGLRY 208


>gi|254696352|ref|ZP_05158180.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260760724|ref|ZP_05873067.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671156|gb|EEX57977.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 713

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 133/204 (65%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A+DP+ S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  + K++ ++P  + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA+++ L +     +  L  AF  +L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
           + +  +++L+ + +  R  L+L  
Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213


>gi|288959562|ref|YP_003449903.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510]
 gi|288911870|dbj|BAI73359.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510]
          Length = 1158

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 77/199 (38%), Positives = 123/199 (61%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDPT S WV A+AGSGKT +L  RVLRL+L+   P+ +LCLT TKAAAAEM+ R+ 
Sbjct: 3   QRRASDPTASVWVGASAGSGKTKVLTDRVLRLMLSGTPPARILCLTFTKAAAAEMAIRIN 62

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +  W+ L DE L   + ++ G++P+      AR L   +++ PGG+K+QTIHAFC+++
Sbjct: 63  RTLGLWATLPDEALEDRLAELCGERPSTEARLNARRLFAQVVDCPGGMKIQTIHAFCQSL 122

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +++FPLEA +  HF + D+  +  L+ EA+ + L +   + +  L +A   +    N ED
Sbjct: 123 LRRFPLEAELAPHFDVMDDRTADGLLTEARDAVLHAGRTEPDSPLGRAMGRLTGELNPED 182

Query: 204 IETLISDIISNRTALKLIF 222
              L++++   R  ++ + 
Sbjct: 183 FAALLAELAGQRGQVERLL 201


>gi|304392405|ref|ZP_07374346.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130]
 gi|303295509|gb|EFL89868.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130]
          Length = 1195

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 98/203 (48%), Positives = 136/203 (66%), Gaps = 3/203 (1%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           QT  EQ  AS P  SAWVSANAGSGKT++L QRV+RLLLA   PS +LCLT TKAAA  M
Sbjct: 11  QTSLEQAKASAPDHSAWVSANAGSGKTYVLTQRVVRLLLAGTDPSRILCLTFTKAAAGVM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGLKVQT 135
           S+RV E + +++ L D+ L   + +++G   K P++  + +AR L    LETPGGLK+QT
Sbjct: 71  SNRVFETLASFASLDDDALKTALVELEGPNCKAPSREKIQRARTLFARALETPGGLKIQT 130

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFCE+++ QFPLEAN+  +F+  DE Q K+++E+A++  +         +L KAF+ I
Sbjct: 131 IHAFCESLLHQFPLEANVPGNFSALDEAQGKQMLEQARRDVIVDADAAPESDLGKAFHAI 190

Query: 196 LEISNDEDIETLISDIISNRTAL 218
           L+ + D  IE  +S+ IS R  L
Sbjct: 191 LDAATDHAIEQGLSEAISKREVL 213


>gi|118593731|ref|ZP_01551100.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614]
 gi|118433641|gb|EAV40304.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614]
          Length = 1178

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/200 (44%), Positives = 130/200 (65%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+  Q LAS P  SAWVSANAGSGKT +L +RV+RLLL    PS +L LT TKAAAAEM+
Sbjct: 18  TRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 77

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +I+  W    DE L+AE+  I+G+KP+ + ++ AR L    LETPGGLK+QTIH F
Sbjct: 78  TRVFKILGEWVTKDDEALAAELQDIEGRKPDAARLAMARRLFARALETPGGLKIQTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE+++ QFPLEAN+  HFA+ D+  + +L+  ++ + L     +      +A   ++++ 
Sbjct: 138 CESLLHQFPLEANVAGHFAVLDDRVAAELMAASRATVLHVAETEPESAFGRALASVIDLM 197

Query: 200 NDEDIETLISDIISNRTALK 219
           +D   +  + ++I +R A +
Sbjct: 198 SDGGAQKALDELIQSRDAFR 217


>gi|154250594|ref|YP_001411418.1| double-strand break repair helicase AddA [Parvibaculum
           lavamentivorans DS-1]
 gi|154154544|gb|ABS61761.1| Double-strand break repair helicase AddA [Parvibaculum
           lavamentivorans DS-1]
          Length = 1156

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/209 (40%), Positives = 123/209 (58%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S      S+T   Q  AS P  S WVSANAGSGKTH L  RV RLLLA   P  +LCLT
Sbjct: 1   MSSLTKKPSETDDAQRRASHPETSVWVSANAGSGKTHALTTRVARLLLAGTDPQRILCLT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            TKAAAAEMS R+ + +  W+ +SDE L+ EI +++G  P+ + +  A  L    +ETPG
Sbjct: 61  FTKAAAAEMSARLYKRLGEWAMMSDEALAEEILEVEGTAPDTAKLRGAGQLFARAIETPG 120

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           GLK+QTIHAFCE ++ +FPLEA++   F I DE  +++L++E + + L     + +  L 
Sbjct: 121 GLKIQTIHAFCERLLGRFPLEADVPPQFEILDERAAQELMDEVRDAVLRRAGGEADTALG 180

Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218
           +A   ++   ++     L+ ++   R   
Sbjct: 181 QALSHVVSRVDELAFGKLLKEVTDQRGNF 209


>gi|163757508|ref|ZP_02164597.1| probable nuclease/helicase protein, ATP dependent [Hoeflea
           phototrophica DFL-43]
 gi|162285010|gb|EDQ35292.1| probable nuclease/helicase protein, ATP dependent [Hoeflea
           phototrophica DFL-43]
          Length = 1196

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/201 (46%), Positives = 138/201 (68%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D+ISQT   Q  A+ P  SAWVSANAGSGKTH+L +RV+RLLL  A PS +LCLT+TKAA
Sbjct: 10  DVISQTTLRQNRAATPQLSAWVSANAGSGKTHVLARRVIRLLLRGARPSAILCLTYTKAA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEMS+RV + +  W  L D+ L+ ++T+++G       +  AR L  T LETPGGLK+Q
Sbjct: 70  AAEMSNRVFKTLADWVLLDDQALAEKLTELEGAPTEPRTLILARRLFATALETPGGLKIQ 129

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFCEA++ +FPLEANI  HF++ D++++ +L+ EA++  +++   + +  L  A  +
Sbjct: 130 TIHAFCEAVLHRFPLEANIPGHFSVLDDQKAAELLAEARRELMSAQAFEADPALADAVTQ 189

Query: 195 ILEISNDEDIETLISDIISNR 215
            L+I  +   + L++ + + R
Sbjct: 190 ALDIGGESGFDKLLAGLYARR 210


>gi|13474239|ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099]
 gi|14024991|dbj|BAB51593.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099]
          Length = 1170

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 134/202 (66%), Gaps = 1/202 (0%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S T + Q  A+DP  SAWVSANAGSGKTH+L QRV+RLLL    PS +LCLT+T+AAAA 
Sbjct: 9   SDTANSQARAADPQNSAWVSANAGSGKTHVLAQRVIRLLLNGTDPSKILCLTYTRAAAAN 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS+RV   ++ W+ L D  L+A+I  ++G++P++  M +AR L    LETPGGLK+QTIH
Sbjct: 69  MSNRVFSTLSEWTVLGDAELAAKIEALEGRRPDRDTMRRARRLFAEALETPGGLKIQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE+++ QFPLEANI +HF + D +    L   A++  ++      N +L  AF  +LE
Sbjct: 129 AFCESVLHQFPLEANIPAHFEMLDGQMEASLFAAARREMISGTAA-GNPDLADAFATVLE 187

Query: 198 ISNDEDIETLISDIISNRTALK 219
              +  ++ L+ +I+  R  L+
Sbjct: 188 RGGEAGLDALLGEIVRKRDGLR 209


>gi|307942842|ref|ZP_07658187.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4]
 gi|307773638|gb|EFO32854.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4]
          Length = 1174

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 91/200 (45%), Positives = 125/200 (62%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+  Q  AS P  SAWVSANAGSGKT +L +RV+RLLL    PS +L LT TKAAAAEM+
Sbjct: 10  TRERQDRASQPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 69

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +I+  W    D+ L+ E+ +I+G+ P+   ++ AR L    LETPGGLK+QTIH F
Sbjct: 70  TRVFKILGEWVTKDDKDLADELEEIEGRTPDAKRVAFARRLFAEALETPGGLKIQTIHGF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CEA++ QFPLEAN+  HF + D+    +L+ EA+   L     + N EL  A   ++ + 
Sbjct: 130 CEALLHQFPLEANVAGHFQVLDDRIGAELMAEARGGVLHLAETNPNSELGNALNTVIGLM 189

Query: 200 NDEDIETLISDIISNRTALK 219
            D   E  + ++I NR  L+
Sbjct: 190 ADGTAEKALDELIQNRDDLR 209


>gi|319780204|ref|YP_004139680.1| double-strand break repair helicase AddA [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166092|gb|ADV09630.1| double-strand break repair helicase AddA [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 1172

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 92/202 (45%), Positives = 134/202 (66%), Gaps = 1/202 (0%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S T + Q  A+DP  SAWVSANAGSGKTH+L QRV+RLLL    PS +LCLT+T+AAAA 
Sbjct: 9   SDTATSQARAADPGNSAWVSANAGSGKTHVLAQRVIRLLLRGTDPSKILCLTYTRAAAAN 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS+RV   ++ W+ L D  L+A++  ++G++P+   M +AR L    LETPGGLK+QTIH
Sbjct: 69  MSNRVFSTLSEWTTLGDVDLAAKVEALEGRRPDLETMRRARRLFAEALETPGGLKIQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE+++ QFPLEANI +HF + D +    L   A++  ++      + +L +AF  IL+
Sbjct: 129 AFCESVLHQFPLEANIPAHFEMLDGQMEASLFAAARREMISGTSA-GDRDLAEAFASILD 187

Query: 198 ISNDEDIETLISDIISNRTALK 219
              +  ++ L+ +I+  R  L+
Sbjct: 188 RGGEAGLDALLGEIVRKRDGLR 209


>gi|328545810|ref|YP_004305919.1| Double-strand break repair helicase AddA [Polymorphum gilvum
           SL003B-26A1]
 gi|326415550|gb|ADZ72613.1| Double-strand break repair helicase AddA [Polymorphum gilvum
           SL003B-26A1]
          Length = 1165

 Score =  222 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 124/202 (61%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++T   Q LAS P  SAWVSANAGSGKT +L +RV+RLLL    PS LLCLT TKAAAAE
Sbjct: 8   ARTLERQDLASRPEASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRLLCLTFTKAAAAE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV  I+  W  L D  L+ EI  + G++P    +  AR L    LETPGGLK+QTIH
Sbjct: 68  MATRVFRILGQWVALDDAALAREIEMLDGRRPGADRLKAARRLFAKALETPGGLKIQTIH 127

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCEA++ QFPLEAN+  HF + D+    +L+ E +   L     D +  L  A   ++ 
Sbjct: 128 AFCEALLHQFPLEANVAGHFTVLDDRVGAELMAEERARVLHRAESDPHSPLGAALGSLIR 187

Query: 198 ISNDEDIETLISDIISNRTALK 219
           +  D  +E  + ++I  R AL+
Sbjct: 188 LMPDATVEAALGELIGRRDALR 209


>gi|90420586|ref|ZP_01228493.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335314|gb|EAS49067.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1209

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 94/208 (45%), Positives = 133/208 (63%), Gaps = 4/208 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            I++T   Q +A+DP RS +VSANAGSGKTH+L +RV+RLLL+   PS +LCLT+TKAAA
Sbjct: 6   GIAETTRLQAIAADPERSVFVSANAGSGKTHVLTERVVRLLLSKVEPSKILCLTYTKAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEMS RV   +  W+   D  L+AEI ++ G+ P    M  AR L    LETPGGLK+QT
Sbjct: 66  AEMSGRVFARLAKWATAEDADLAAEIARLDGRPPTPERMIVARRLFAEALETPGGLKIQT 125

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFCEAI+ QFPLEAN+  HF + D+ +S  L+ EA++  +        +E   A  + 
Sbjct: 126 IHAFCEAILHQFPLEANVPGHFEVLDDAESMALLAEARRLLITGAARKAPDEAASALADA 185

Query: 196 LE----ISNDEDIETLISDIISNRTALK 219
                 ++ +  ++ LI +I++ R A++
Sbjct: 186 FASALTLAGEWGLDQLIGEIVNRRDAIR 213


>gi|83313261|ref|YP_423525.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82948102|dbj|BAE52966.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 1154

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 123/204 (60%), Gaps = 1/204 (0%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                Q  A+DPT S WV+A+AG+GKT +L  RVL LLLA   P  +LCLT TKAAAAEM
Sbjct: 10  DADQRQRRAADPTASVWVAASAGTGKTKVLTDRVLTLLLAGTPPHKILCLTFTKAAAAEM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           S+R+   +  W+   D  L+ ++ ++ G+ P+  +M+ AR L   +L+ PGG+ ++TIHA
Sbjct: 70  SNRIAGRLGQWATAHDSDLADDLGRLLGRAPSPGEMTGARRLFAALLDAPGGMHMETIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC++++++FPLEA I  HF + D+  + +L+E AK   L+   +  +  L  A   +   
Sbjct: 130 FCQSLLRRFPLEAGIAPHFQVMDDRDAGELLEAAKLEILSQARM-GDGALGGALALVTSR 188

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
            ++     L+ ++ + R  L+ +F
Sbjct: 189 VHETAFPELMGELTAERGRLERLF 212


>gi|144899270|emb|CAM76134.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1146

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 126/207 (60%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I +  + Q  A+DPT S WV+A+AG+GKT +L  RVL LLLA   P  LLCLT TKAAA
Sbjct: 1   MIVEASNRQRQAADPTASVWVAASAGTGKTKVLTDRVLNLLLAGNAPHKLLCLTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEMS+R+   +  W+   D  L   +T++ G+ P   +  +AR L   +L+ PGG+ ++T
Sbjct: 61  AEMSNRINAKLATWAVADDASLDQTLTELLGRPPTPPETIRARRLFAQVLDAPGGMHMET 120

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFC++++++FPLEA I  HF + D+  + +L++EAK+  L       +  L  A  ++
Sbjct: 121 IHAFCQSLLRRFPLEAGIAPHFQVMDDRDAGELLDEAKEEVLTHARHGADAHLAAALDQV 180

Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222
               ++     L++++ S+R  LK + 
Sbjct: 181 TRHVHETGFPDLLAELASDRGRLKRLL 207


>gi|23016111|ref|ZP_00055871.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 1154

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 124/207 (59%), Gaps = 1/207 (0%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L       Q  A+DPT S WV+A+AG+GKT +L  RVL LLLA   P  +LCLT TKAAA
Sbjct: 7   LSQDADRRQRRAADPTASVWVAASAGTGKTKVLTDRVLTLLLAGTPPHKILCLTFTKAAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEMS+R+   +  W+   D+ L+ ++ ++ G+ P   +M  AR L  ++L+ PGG+ ++T
Sbjct: 67  AEMSNRIAGRLGQWATARDQDLAGDLERLLGRPPAVGEMIGARRLFASLLDAPGGMHMET 126

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFC++++++FPLEA I  HF + D+  + +L+E AK   L+   +  +  L +A   +
Sbjct: 127 IHAFCQSLLRRFPLEAGIAPHFQVMDDRDAGELLESAKLEVLSHARM-GDGALGRALALV 185

Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222
               ++     L+ ++ + R  L+ + 
Sbjct: 186 TARVHETAFPDLMGELTAERGRLERLL 212


>gi|239833145|ref|ZP_04681474.1| double-strand break repair helicase AddA [Ochrobactrum intermedium
           LMG 3301]
 gi|239825412|gb|EEQ96980.1| double-strand break repair helicase AddA [Ochrobactrum intermedium
           LMG 3301]
          Length = 1195

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/198 (45%), Positives = 131/198 (66%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP  S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M +RV 
Sbjct: 28  QGRAADPAASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVMQNRVF 87

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             ++ W+ L DE L+  +  ++G++P  + ++ AR L    LETPGGLK+QTIHAFCEAI
Sbjct: 88  MRLSEWAVLPDEELTERLKSLEGRRPGDARLAAARRLFARALETPGGLKIQTIHAFCEAI 147

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + QFPLEANI  HF + D+     L+ EA++  L +     + EL  AF ++L+ + +  
Sbjct: 148 LHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDMELAAAFADVLQAAGEMG 207

Query: 204 IETLISDIISNRTALKLI 221
           +++L+ + +S R  L+  
Sbjct: 208 LQSLLEEAVSRRNGLQTY 225


>gi|316931471|ref|YP_004106453.1| double-strand break repair helicase AddA [Rhodopseudomonas
           palustris DX-1]
 gi|315599185|gb|ADU41720.1| double-strand break repair helicase AddA [Rhodopseudomonas
           palustris DX-1]
          Length = 1161

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 117/201 (58%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA 
Sbjct: 7   NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  L DE LSA I     K    S +++AR L    LETPGGLKVQTIH
Sbjct: 67  MAERVFTTLGHWVKLDDEELSAAIRATGIKAVGPSLLAQARKLFACALETPGGLKVQTIH 126

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A C  ++QQFP EAN+ + F++ D+    +L++ A    L       + +  +A    + 
Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVLLRAAAAPDSDAGRALAFAMT 186

Query: 198 ISNDEDIETLISDIISNRTAL 218
            + D     ++ +   +R   
Sbjct: 187 SAADVTFRDVVQEACMSRDRF 207


>gi|192288510|ref|YP_001989115.1| double-strand break repair helicase AddA [Rhodopseudomonas
           palustris TIE-1]
 gi|192282259|gb|ACE98639.1| double-strand break repair helicase AddA [Rhodopseudomonas
           palustris TIE-1]
          Length = 1161

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 117/201 (58%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA 
Sbjct: 7   NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  L DE LSA I     K    S +++AR L    LETPGGLKVQTIH
Sbjct: 67  MAERVFTTLGHWVKLDDEELSAAIHATGVKTVGPSLLAQARKLFACALETPGGLKVQTIH 126

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A C  ++QQFP EAN+ + F++ D+    +L++ A    L       + +  +A    + 
Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVLLRAAAAPDSDAGRALAFAMT 186

Query: 198 ISNDEDIETLISDIISNRTAL 218
            + D     ++ +   +R   
Sbjct: 187 SAADVTFRDVVQEACMSRDRF 207


>gi|302384281|ref|YP_003820104.1| double-strand break repair helicase AddA [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194909|gb|ADL02481.1| double-strand break repair helicase AddA [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 1160

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 3/204 (1%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
              Q+ A+DP +S +V+ANAGSGKT  LV RV RLLL +  P  +LC+T+TKAAAAEM  
Sbjct: 12  DPAQIAAADPRQSVFVTANAGSGKTSTLVDRVARLLLEDVSPGEILCVTYTKAAAAEMQA 71

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIH 137
           R+ + + AW+ + D  L A +  + G+     +K+D+S AR L    L+TPGGLK+QT+H
Sbjct: 72  RLFDRLGAWAVMDDATLEASLADLDGRAATILSKTDLSNARRLFAKALDTPGGLKIQTLH 131

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE ++++FPLEA +T  F + +++ +  L  EA++      + + + E+ +A+     
Sbjct: 132 AFCEKLLRRFPLEAGVTPGFTVLEDQAATALSHEAREDLARRALGNGDGEIGRAYAHFAV 191

Query: 198 ISNDEDIETLISDIISNRTALKLI 221
             + +  E L++ I ++R  L   
Sbjct: 192 ELDFKSFEGLLARIEADRARLLDY 215


>gi|39933154|ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39652779|emb|CAE25518.1| Possible exonuclease V and helicase activity based on COG
           assignment [Rhodopseudomonas palustris CGA009]
          Length = 1161

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 116/201 (57%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA 
Sbjct: 7   NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  L DE LSA I     K    S +++AR L    LETPGGLKVQTIH
Sbjct: 67  MAERVFTTLGHWVKLDDEELSAAIHATGVKTVGPSLLAQARKLFACALETPGGLKVQTIH 126

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A C  ++QQFP EAN+ + F++ D+    +L++ A    L         +  +A    + 
Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVLLRAAAAPESDAGRALAFAMT 186

Query: 198 ISNDEDIETLISDIISNRTAL 218
            + D     ++ +   +R   
Sbjct: 187 SAADVTFRDVVQEACMSRDRF 207


>gi|153008153|ref|YP_001369368.1| double-strand break repair helicase AddA [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560041|gb|ABS13539.1| Double-strand break repair helicase AddA [Ochrobactrum anthropi
           ATCC 49188]
          Length = 1180

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 92/203 (45%), Positives = 134/203 (66%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +T   Q  A++P  S WVSANAGSGKTH+L +RV+RLLL    PS +LCLT+TKAAAA M
Sbjct: 10  ETLRAQSNAANPAASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV   ++ W+ L DE L+  +  ++G++PN + ++ AR L    LETPGGLK+QTIHA
Sbjct: 70  QNRVFMRLSEWAVLPDEELAERLKSLEGRRPNDARLAAARRLFARALETPGGLKIQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCEAI+ QFPLEANI  HF + D+     L+ EA++  L +     + +L  AF ++L+ 
Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDIDLAAAFADVLQA 189

Query: 199 SNDEDIETLISDIISNRTALKLI 221
           S +  +++L+ + +S R  L+  
Sbjct: 190 SGEMGLQSLLDEAVSRRNGLQTY 212


>gi|319403513|emb|CBI77092.1| ATP-dependent nuclease subunit A [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 1152

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/205 (42%), Positives = 129/205 (62%), Gaps = 7/205 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DPT S WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T AAA+ M  R+ 
Sbjct: 14  QAKATDPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             ++ WS L D+ L   ++K++ K  N   ++ AR L    LETPGGLK+QT HAFCE++
Sbjct: 74  RTLSNWSGLDDKQLQTILSKLENKPVNTQKLANARQLFARALETPGGLKIQTFHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + QFPLEANI SHF + D+   KKL+++A++  L       + + + A  E+ +I ++  
Sbjct: 134 LHQFPLEANIASHFELLDDINRKKLLQQARRKLLI------HRDAQLALKELFKIISENT 187

Query: 204 IETLISDIISNRTAL-KLIFFFFSY 227
           +  L+ +    +  L + + F FS 
Sbjct: 188 LNQLLYEATQKQHELSEFLPFIFSE 212


>gi|319406427|emb|CBI80067.1| ATP-dependent nuclease subunit A [Bartonella sp. 1-1C]
          Length = 1152

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 87/205 (42%), Positives = 129/205 (62%), Gaps = 7/205 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DPT S WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T AAA+ M  R+ 
Sbjct: 14  QAKATDPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             ++ WS L D+ L   ++K++ K  N   ++ AR L    LETPGGLK+QT HAFCE++
Sbjct: 74  RTLSNWSGLDDKQLQTILSKLENKPVNTQKLANARQLFARALETPGGLKIQTFHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + QFPLEANI SHF + D+   KKL+++A++  L       + + + A  E+ +I ++  
Sbjct: 134 LHQFPLEANIASHFELLDDINRKKLLQQARRKLLI------HRDAQLALKELFKIISENT 187

Query: 204 IETLISDIISNRTAL-KLIFFFFSY 227
           +  L+ +    +  L + + F FS 
Sbjct: 188 LNQLLYEATQKQHELSEFLPFIFSE 212


>gi|83950792|ref|ZP_00959525.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           nubinhibens ISM]
 gi|83838691|gb|EAP77987.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           nubinhibens ISM]
          Length = 1112

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 122/203 (60%), Gaps = 8/203 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +      Q+ A+ P  S W+SANAGSGKT +L  RV RLLLA+ +P  +LCLT+TKAAA+
Sbjct: 1   MDDATRRQIDAARPDFSTWLSANAGSGKTRVLTDRVARLLLADVNPQNILCLTYTKAAAS 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQT 135
           EM +R+ + + AW+ L D  L  E+ K+      +   ++KAR L  T +ETPGGL++QT
Sbjct: 61  EMQNRLFQRLGAWAMLPDADLREELRKLGVDAVIDDLPLTKARRLFATAIETPGGLRIQT 120

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC A++++FPLEA +T  F   D+  +  L    +   +  I L  +  L +   ++
Sbjct: 121 IHSFCAALLRRFPLEAGVTPQFTEMDDRTAATL----RSDVVEEIALGPDAALLR---DL 173

Query: 196 LEISNDEDIETLISDIISNRTAL 218
           +   + +D++ L+ +I+  R  L
Sbjct: 174 VSYYSGDDLDKLLREILGKRDQL 196


>gi|83859061|ref|ZP_00952582.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852508|gb|EAP90361.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 1219

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 1/199 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q  A+DP+ S +V ANAGSGKT +LV RV RLLLA A P  +LC+T TKAAA EM 
Sbjct: 14  ASEAQATAADPSASVFVEANAGSGKTRVLVDRVARLLLAGARPDRILCVTFTKAAAGEMQ 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +  WS L D+ L+ E+  +  +   +  + +AR L    LETPGGLK+QT+HAF
Sbjct: 74  ARLFRKLGDWSTLPDDALTKELDALVTEG-QRPPLDEARRLFARALETPGGLKIQTLHAF 132

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE+++++FPLEA +   F + D+     L  EA ++       D   E+ +A   +++ S
Sbjct: 133 CESLLRRFPLEAGLPPGFEVQDDASGLALQTEALEALSGQAHRDPEGEIAQAIAALIDGS 192

Query: 200 NDEDIETLISDIISNRTAL 218
             + +  L + ++S R  L
Sbjct: 193 GADALARLSAFVMSKRHEL 211


>gi|323138129|ref|ZP_08073202.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
           49242]
 gi|322396591|gb|EFX99119.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
           49242]
          Length = 1145

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/201 (45%), Positives = 130/201 (64%), Gaps = 1/201 (0%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S TK+ Q  ASDP  SAWVSANAGSGKTH+L QRV+RLLLA   PS +LCLT+TKAAAA 
Sbjct: 8   SLTKNAQRDASDPAASAWVSANAGSGKTHVLSQRVVRLLLARVPPSRILCLTYTKAAAAN 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS R+ +++  W+ L DE L  EI      +P++++++ AR L    +ETPGGLK+QTIH
Sbjct: 68  MSARIFDVLARWALLDDESLIREIEATGADRPSRAELNVARCLFARAVETPGGLKIQTIH 127

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFCE ++  FP EAN  + F + D+ +  +L+E +K+  L   M D+   L+ A   +  
Sbjct: 128 AFCEKLLHHFPFEANAPAGFRVIDDMERAELLEASKRRALDCAMRDSG-ALRHALEHVAR 186

Query: 198 ISNDEDIETLISDIISNRTAL 218
            ++    + L  +++ NR AL
Sbjct: 187 ETSGFGFDNLCDELLGNRDAL 207


>gi|89067401|ref|ZP_01154914.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
           granulosus HTCC2516]
 gi|89046970|gb|EAR53024.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
           granulosus HTCC2516]
          Length = 1119

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/201 (37%), Positives = 111/201 (55%), Gaps = 10/201 (4%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++    Q+ A+DP  S W+SANAGSGKT +L +RV RLLL    P  +LCLT TKAAAAE
Sbjct: 5   NEATRAQVEAADPANSTWLSANAGSGKTRVLTERVARLLLGGVDPQNILCLTFTKAAAAE 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+   + +W+ +    L  E++++   +P +  + +AR L    +ETPGGLK+QTIH
Sbjct: 65  MQNRLFHRLGSWAMMEAGKLREELSELGAAQPEE--LDEARRLFARAIETPGGLKIQTIH 122

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFC  ++++FPLEA I+  F   ++  +  L  E              E    A   I  
Sbjct: 123 AFCAGVLRRFPLEAGISPRFTEMEDRAAALLRAEILDEL--------AEADPAAVDGIAR 174

Query: 198 ISNDEDIETLISDIISNRTAL 218
           +    DI  L  +I +NR A 
Sbjct: 175 LYTGADIADLTGEITANRAAF 195


>gi|110635907|ref|YP_676115.1| DNA helicase/exodeoxyribonuclease V, subunit A [Mesorhizobium sp.
           BNC1]
 gi|110286891|gb|ABG64950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Chelativorans sp.
           BNC1]
          Length = 1177

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 102/196 (52%), Positives = 142/196 (72%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q LASDP+ SAWVSANAGSGKTH+L  RV+RLLL    PS +LCLT+T+AAAA M++RV 
Sbjct: 15  QALASDPSLSAWVSANAGSGKTHVLASRVIRLLLKGTDPSKILCLTYTRAAAANMANRVF 74

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           E +  WS LSD+ L+ E+ K++G++P+   + +AR L    LETPGGLK+QTIHAFCEAI
Sbjct: 75  ENLAGWSLLSDDDLAEEVAKLEGRRPSSEKLRRARQLFARALETPGGLKIQTIHAFCEAI 134

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + QFPLEANI  HF + DE+  + L  EA++  L SI  + +  L++AF E+LE   +  
Sbjct: 135 LHQFPLEANIAGHFDLLDEQMEEALFAEARRDLLTSIAAERDGPLEEAFAEVLERGGESG 194

Query: 204 IETLISDIISNRTALK 219
           ++TL+++I++ R  L+
Sbjct: 195 LQTLLTEIVARRDELR 210


>gi|158422338|ref|YP_001523630.1| putative exonuclease V [Azorhizobium caulinodans ORS 571]
 gi|158329227|dbj|BAF86712.1| putative exonuclease V [Azorhizobium caulinodans ORS 571]
          Length = 1171

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 121/201 (60%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++    Q +A+ P  SAWVSANAGSGKTH+L QRV+RLLL    P  +LCLT+TKAAAA 
Sbjct: 17  AEASRRQGVAASPQISAWVSANAGSGKTHVLAQRVIRLLLQGTPPGRILCLTYTKAAAAN 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M++RVL+I++ W+ L D  L AE+ ++ G  P      +AR L    LETPGGLK+QTIH
Sbjct: 77  MANRVLKILSRWAGLDDAALDAELMRMDGMPPTPGLRIQARRLFAAALETPGGLKIQTIH 136

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFC  ++ +FP EA + + F   D+    +L+   +   +       +  L +A   ++E
Sbjct: 137 AFCGGLLHRFPFEAGVAAGFRELDDVGRMELMARIRADLVVEAARAPSSTLGRALARLME 196

Query: 198 ISNDEDIETLISDIISNRTAL 218
             +D  I+ L+   I+ R+ +
Sbjct: 197 EMSDGGIDDLLEAAIAARSTI 217


>gi|90421911|ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90103925|gb|ABD85962.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris BisB18]
          Length = 1164

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 113/199 (56%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q+ ASDPT S +VSANAGSGKTH+LVQRV+RLLLA   P  +LC+T TKAAAA M+
Sbjct: 11  ATERQVQASDPTASVFVSANAGSGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAANMA 70

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV   +  W  LSD+ L A I      +P+     +AR L    LETPGGLKVQTIHA 
Sbjct: 71  QRVFTTLGHWVTLSDDSLDAAIRAAGIAQPDSKLRMRARELFACALETPGGLKVQTIHAL 130

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++QQFP EAN+ + FA+ DE    +++E A  S L       N    KA    +  +
Sbjct: 131 CTRLLQQFPFEANVPARFAVLDERDQTEMMERASLSVLLQAAQAPNSAAGKALTVAMTSA 190

Query: 200 NDEDIETLISDIISNRTAL 218
            D     ++ D   +R   
Sbjct: 191 ADVTFRDVVRDACFSRDKF 209


>gi|254476353|ref|ZP_05089739.1| double-strand break repair helicase AddA [Ruegeria sp. R11]
 gi|214030596|gb|EEB71431.1| double-strand break repair helicase AddA [Ruegeria sp. R11]
          Length = 1125

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/201 (36%), Positives = 117/201 (58%), Gaps = 3/201 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM 
Sbjct: 7   ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQ 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           +R+ + +  W+ L D+ L++ +T++ +G   +   M++AR L    +ETPGGLK+QTIH+
Sbjct: 67  NRLFKRLGEWAMLGDDALTSALTELGEGAIISPEGMAQARTLFARAIETPGGLKIQTIHS 126

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC +++++FPLEA ++  F+  ++  +  L  E  +    +   D   E  K   ++  +
Sbjct: 127 FCASLLRRFPLEAGVSPQFSEMEDRAAMLLRAEIVEDF--AQGDDRYAEEAKLIAQLARV 184

Query: 199 SNDEDIETLISDIISNRTALK 219
             D D +TL + I   R   +
Sbjct: 185 VTDSDFDTLTAAICQRRADFE 205


>gi|84685773|ref|ZP_01013669.1| Helicase, UvrD/Rep family protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665866|gb|EAQ12340.1| Helicase, UvrD/Rep family protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 1119

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 9/201 (4%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            +    Q+ A+DP  + W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 4   DEATQRQVEAADPGGNTWLSANAGSGKTRVLTDRVARLLLNGVEPGHILCLTYTKAAASE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ + + AW+ L D+ L AE+  +        D+ KAR L    +E PGGLK+QTIH
Sbjct: 64  MQNRLFQRLGAWAMLGDDDLRAELDALGVM--GAPDLRKARRLFARAIEAPGGLKIQTIH 121

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFC  I+++FP+EA ++  F   D+  ++ L EE  +          + +L+     +  
Sbjct: 122 AFCATILRRFPMEAGVSPDFKEMDDRTAQLLQEEIVEEM-------ASGDLRTRVEGLAR 174

Query: 198 ISNDEDIETLISDIISNRTAL 218
                +I  L  +II  R   
Sbjct: 175 YYTGAEIIGLTGEIIGKRQHF 195


>gi|255262268|ref|ZP_05341610.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62]
 gi|255104603|gb|EET47277.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62]
          Length = 1119

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 120/198 (60%), Gaps = 8/198 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             Q+ A++P  S W++ANAGSGKT +L  RV RLLL  A P  +LCLT+TKAAA+EM +R
Sbjct: 7   ERQVRAANPKASTWLAANAGSGKTRVLTDRVARLLLDEAKPEHILCLTYTKAAASEMQNR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           + + + AW+ + D+ L  E+  +  + + + + +++AR L    +ETPGGLK+QTIH+FC
Sbjct: 67  LFKRLGAWTMMDDDKLRGELCDLGIESRIDTNTLARARVLFAQAIETPGGLKIQTIHSFC 126

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            +++++FPLEA ++  F   ++  +K L  E               +   A Y++    +
Sbjct: 127 ASLLRRFPLEAGVSPQFVEMEDRAAKMLRAEVVDDM-------ARGDHTAAVYDLASYVS 179

Query: 201 DEDIETLISDIISNRTAL 218
           D D++ ++  I S++ +L
Sbjct: 180 DSDLDRVLMQITSHKESL 197


>gi|115522488|ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115516435|gb|ABJ04419.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris BisA53]
          Length = 1165

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 117/201 (58%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S   ++Q+ ASDPT S +VSANAG+GKTH+LVQRV+RLLLA   P  +LC+T TKAAAA 
Sbjct: 9   SDAIAKQVQASDPTASVFVSANAGAGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAAN 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  LSD  L A I      KP+    ++AR L    LETPGGLKVQTIH
Sbjct: 69  MAQRVFSTLGHWVTLSDGALDAAIRGAGIAKPDAKLRTRARELFACALETPGGLKVQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A C  ++QQFP EAN+ + F + DE    +++E A    L       + E+ +A    + 
Sbjct: 129 ALCTRLLQQFPFEANVPARFTVLDERDQAEMMERASLGVLLRAASAPDSEIGRALTTAMT 188

Query: 198 ISNDEDIETLISDIISNRTAL 218
            + D     ++ +   +R + 
Sbjct: 189 SAADTTFRDVVREACMSRDSF 209


>gi|75674249|ref|YP_316670.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419119|gb|ABA03318.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter
           winogradskyi Nb-255]
          Length = 1202

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 111/198 (56%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
              + Q  ASDP  S +VSANAGSGKTH+LVQRV+RLLL +  P+ +LC+T TKAAAA M
Sbjct: 11  DASARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNDVDPARILCITFTKAAAANM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV   +  W  L DE L+  +  +   +P      +AR L  + LETPGGLKVQTIHA
Sbjct: 71  AERVFSTLGHWVTLDDEALNGALRDVGIAQPGARWRERARKLFASALETPGGLKVQTIHA 130

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++QQFP EA + + F + DE    +++E A    +     D +     A    +  
Sbjct: 131 LCTRLLQQFPFEAEVPARFTVLDERDQTEMMERASLKVMLDASQDPDSPSGLALRYAMSA 190

Query: 199 SNDEDIETLISDIISNRT 216
           + D  +  +++    +R 
Sbjct: 191 ATDSTLRDVLNQACLSRD 208


>gi|319898220|ref|YP_004158313.1| ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73]
 gi|319402184|emb|CBI75715.1| putative ATP-dependent nuclease subunit A [Bartonella clarridgeiae
           73]
          Length = 1152

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/195 (40%), Positives = 121/195 (62%), Gaps = 6/195 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP ++ WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T AAA+ M  R+ 
Sbjct: 14  QAKATDPIKNVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +++W+   D+ L   ++ ++ K  N   ++ AR L    LETPGGLK+QT HAFCE++
Sbjct: 74  RTLSSWNQFDDKQLQKILSNLENKPANAKKLANARQLFARALETPGGLKIQTFHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + QFPLEANI  HF + D+   KKL+++A+   L       + + + A  E+ ++ N+  
Sbjct: 134 LHQFPLEANIAGHFELLDDINRKKLLKQARSKLLT------HRDAQLALKELFKVINENT 187

Query: 204 IETLISDIISNRTAL 218
           +  L+ +    +  L
Sbjct: 188 LNQLLYEATQKQHEL 202


>gi|114568640|ref|YP_755320.1| DNA helicase/exodeoxyribonuclease V A [Maricaulis maris MCS10]
 gi|114339102|gb|ABI64382.1| DNA helicase/exodeoxyribonuclease V, subunit A [Maricaulis maris
           MCS10]
          Length = 1183

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 120/204 (58%), Gaps = 7/204 (3%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D++    ++Q  A+ P  S +V ANAGSGKT +LV RV+ LLLA   P T+LC+T+TKAA
Sbjct: 9   DILKSASADQQRAARPEASVFVEANAGSGKTRVLVDRVINLLLAGHKPETILCVTYTKAA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+ + +  WS   DE+L+ E+  +  +     D ++AR L    LETPGGLK+Q
Sbjct: 69  AAEMKERLFKRLGDWSVTPDEVLAVELKALLDRDLKPGDANRARKLFAQALETPGGLKIQ 128

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFCE ++++FPLEA     F   D+  + K ++ A+++ L+ +         +A   
Sbjct: 129 TIHAFCEGLLRRFPLEAGAPPGFDTLDDISAGKAMDAARRAVLSGLA-------PEAVNT 181

Query: 195 ILEISNDEDIETLISDIISNRTAL 218
           ++E    + I T++    SNR   
Sbjct: 182 LIETGGPDAINTILRWARSNRHDF 205


>gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris
           BL2]
 gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris
           BL2]
          Length = 1151

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/201 (45%), Positives = 117/201 (58%), Gaps = 1/201 (0%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           QT  +Q  ASDP  S WVSANAGSGKTH+L QRV+RLLL    PS +LCLT TKAAAA M
Sbjct: 9   QTLQKQREASDPAASVWVSANAGSGKTHVLAQRVVRLLLQGTPPSKILCLTFTKAAAANM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           S RV   +  W+ L D  L   I       P+  +M +AR L    +ETPGGLK+QTIHA
Sbjct: 69  SMRVFNTLARWTALDDAELRRAIVATGAPSPDWREMREARKLFARTVETPGGLKIQTIHA 128

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FCE ++  FP EAN  S F +ADEE+  +L+  A+   L S   + + ELK     +   
Sbjct: 129 FCERLLHLFPFEANAPSRFEVADEERQGELLARARNDVLGSAA-EADHELKAIVDRVAGE 187

Query: 199 SNDEDIETLISDIISNRTALK 219
            ++    TL+   +  R  L+
Sbjct: 188 CSEYGFATLLEQALRLRARLR 208


>gi|254509530|ref|ZP_05121597.1| double-strand break repair helicase AddA [Rhodobacteraceae
           bacterium KLH11]
 gi|221533241|gb|EEE36229.1| double-strand break repair helicase AddA [Rhodobacteraceae
           bacterium KLH11]
          Length = 1119

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 12/232 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + L +     Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKA
Sbjct: 1   MTLRNDATERQVQAARPDASTWLAANAGSGKTRVLTDRVARLLLDGVQPQHILCLTYTKA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLK 132
           AA+EM +R+ + +  W+ L+D  L +++T +  +   N   +++AR L    +ETPGGLK
Sbjct: 61  AASEMQNRLFKRLGEWAMLADAPLLSQLTDLGIEGVINPDRLAQARTLFARAIETPGGLK 120

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +QTIH+FC A++++FPLEA ++  FA  ++  +  L +E  +                  
Sbjct: 121 IQTIHSFCAALLRRFPLEAGVSPQFAEMEDRAAALLRDEIIEDF-------AEGPQAGLI 173

Query: 193 YEILEISNDEDIETLISDIISNRTA----LKLIFFFFSYLWRRKIIEKSLWS 240
            E      D   + L + I   R      L+       +       E++L  
Sbjct: 174 EEAARFVTDTGFDKLTAAISQKRNHFAQELQWSDLLRRFDLPEGFDEEALLH 225


>gi|83594763|ref|YP_428515.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83577677|gb|ABC24228.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 1187

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 120/214 (56%), Gaps = 11/214 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D +   K ++  A DP  SAWV+A+AG+GKT +L  RVLRLLLA   P  LLCLT TKAA
Sbjct: 16  DPLDPAKPQRRAA-DPLASAWVAASAGTGKTKVLTDRVLRLLLAGTPPQRLLCLTFTKAA 74

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM-----SKARHLLITILETPG 129
           AAEM++RV  ++  W+ L +E L   +  + G  P   +       +AR L   +L+ PG
Sbjct: 75  AAEMANRVSAVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRLFAQVLDCPG 134

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           GL++QTIH FC+ ++++FPLEA +  HF + D+ +++ L + A+ + L +     + E  
Sbjct: 135 GLRIQTIHGFCQTLLRRFPLEAGVAPHFEVLDDREAQALHQSARDAVLRAARQAEDGEGG 194

Query: 190 K-----AFYEILEISNDEDIETLISDIISNRTAL 218
                 A   +    ++   + +++ +   R  L
Sbjct: 195 DPALAAALAVVTGHLSESRFDEVMAALGGQRGRL 228


>gi|27375863|ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110]
 gi|27349001|dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110]
          Length = 1180

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 113/201 (56%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            + ++ Q  ASDPT SA+VSANAGSGKTH+LVQRV+RLLL+   P  +LC+T TKAAAA 
Sbjct: 21  DEVRARQARASDPTASAFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAAN 80

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  L D  L A I  +    P+     +AR L    LETPGGLKVQTIH
Sbjct: 81  MAERVFTTLGHWVTLDDIALDAAIRAVGIPHPSAKLRREARKLFACALETPGGLKVQTIH 140

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A C  ++QQFP EAN+ + F++ DE     ++E A    L     D      +A    + 
Sbjct: 141 ALCTRLLQQFPFEANVPARFSVIDERDQTDMMERANLKVLLEAARDPETVTGRALLTAMA 200

Query: 198 ISNDEDIETLISDIISNRTAL 218
            + D   + ++ +   +R   
Sbjct: 201 SAADVTFKEVVREACLSRDHF 221


>gi|260575782|ref|ZP_05843778.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2]
 gi|259021935|gb|EEW25235.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2]
          Length = 1090

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 8/203 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +   + Q+ A+DP RS W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 4   NDASARQVQAADPGRSTWLAANAGSGKTRVLTDRVARLLLEGVEPGRILCLTYTKAAASE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+   +  W+ L D+ L A +  +          + KAR L    +ETPGGL++QTI
Sbjct: 64  MQNRLFRRLGGWAMLEDDALRAALADLGVAGAVQPETLGKARQLFARAIETPGGLRIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++++FPLEA ++  F   D+  +  L +E     LA           +A  ++ 
Sbjct: 124 HSFCASLLRRFPLEAGVSPQFTELDDRAASLLRDEIVDE-LAEFGA------PEAVADLA 176

Query: 197 EISNDEDIETLISDIISNRTALK 219
                ED   L +++   R   +
Sbjct: 177 RAYTGEDFSALAAEVAGQRRWFE 199


>gi|77462066|ref|YP_351570.1| UvrD/Rep family helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77386484|gb|ABA77669.1| Helicase, UvrD/Rep family [Rhodobacter sphaeroides 2.4.1]
          Length = 1106

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 7/203 (3%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L  +    Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA
Sbjct: 4   LRDEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM +R+   +  W+ L D  L   +  +         +++AR L    +ETPGGL++QT
Sbjct: 64  SEMQNRLFRRLGEWAMLDDAELRRALDALGVAAVGHEVLAQARRLFARAIETPGGLRIQT 123

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  ++++FPLEA ++  F   D+  ++ L EE  +     I         +   ++
Sbjct: 124 IHSFCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEELADRIA-------PEVVADL 176

Query: 196 LEISNDEDIETLISDIISNRTAL 218
                 ED   L  ++  N   L
Sbjct: 177 ARAYTGEDFGALAEEVARNAAGL 199


>gi|240141289|ref|YP_002965769.1| putative helicase-exonuclease type V protein family
           [Methylobacterium extorquens AM1]
 gi|240011266|gb|ACS42492.1| putative helicase-exonuclease type V protein family
           [Methylobacterium extorquens AM1]
          Length = 1147

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 120/199 (60%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+T++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++  FP EAN+ + F + D+ QS++  E    + LA  +L  N+ L  A   +   +
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDALAVVGAEA 193

Query: 200 NDEDIETLISDIISNRTAL 218
           + + +   I   +  R   
Sbjct: 194 SGDTLRDAIRSAMRTRALF 212


>gi|163853836|ref|YP_001641879.1| double-strand break repair helicase AddA [Methylobacterium
           extorquens PA1]
 gi|163665441|gb|ABY32808.1| double-strand break repair helicase AddA [Methylobacterium
           extorquens PA1]
          Length = 1147

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 120/199 (60%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+T++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++  FP EAN+ + F + D+ QS++  E    + LA  +L  N+ L  A   +   +
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDALAVVGAEA 193

Query: 200 NDEDIETLISDIISNRTAL 218
           + + +   I   +  R   
Sbjct: 194 SGDTLRDAIRSAMRTRALF 212


>gi|254563798|ref|YP_003070893.1| helicase-exonuclease type V protein family [Methylobacterium
           extorquens DM4]
 gi|254271076|emb|CAX27083.1| putative helicase-exonuclease type V protein family
           [Methylobacterium extorquens DM4]
          Length = 1147

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 120/199 (60%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+T++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++  FP EAN+ + F + D+ QS++  E    + LA  +L  N+ L  A   +   +
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDALAVVGAEA 193

Query: 200 NDEDIETLISDIISNRTAL 218
           + + +   I   +  R   
Sbjct: 194 SGDTLRDAIRSAMRTRALF 212


>gi|260431946|ref|ZP_05785917.1| double-strand break repair helicase AddA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415774|gb|EEX09033.1| double-strand break repair helicase AddA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 1119

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 12/228 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            +    Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 5   DEATERQVQAARPDASTWLAANAGSGKTRVLTDRVARLLLDGVQPQHILCLTYTKAAASE 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+ + +  W+ L D  L  ++T++  +   +   +++AR L    +ETPGGLK+QTI
Sbjct: 65  MQNRLFKRLGEWAMLDDVALLRQLTELGVEGVIDPDRLARARTLFARAIETPGGLKIQTI 124

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++++FPLEA ++  F+  ++  +  L EE  +               +   ++ 
Sbjct: 125 HSFCASLLRRFPLEAGVSPQFSEMEDRAAALLREEIVEDF-------AEGPQARLIEDVA 177

Query: 197 EISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEKSLWS 240
               D   + L + I   RT    AL+       +       E +L +
Sbjct: 178 RHITDTGFDKLTAAIAQKRTLFTPALQWPDLLARFGLPEGFDEDALLA 225


>gi|218532781|ref|YP_002423597.1| double-strand break repair helicase AddA [Methylobacterium
           chloromethanicum CM4]
 gi|218525084|gb|ACK85669.1| double-strand break repair helicase AddA [Methylobacterium
           chloromethanicum CM4]
          Length = 1147

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 120/199 (60%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+T++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++  FP EAN+ + F + D+ QS++  E    + LA  +L  N+ L  A   +   +
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDALAVVGAEA 193

Query: 200 NDEDIETLISDIISNRTAL 218
           + + +   I   +  R   
Sbjct: 194 SGDTLRDAIRSAMRTRALF 212


>gi|91974684|ref|YP_567343.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91681140|gb|ABE37442.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris BisB5]
          Length = 1159

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 84/209 (40%), Positives = 118/209 (56%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S    +  Q +  Q+LASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T
Sbjct: 1   MSAPRSIPDQARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVPPERILCIT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            TKAAAA M+ RV   +  W  L DE L+A I     K    S +++AR L    LETPG
Sbjct: 61  FTKAAAANMAERVFTTLGRWVTLDDEALTAAIKATGIKSVGPSLLAQARKLFACALETPG 120

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           GLKVQTIHA C  ++QQFP EAN+ + F++ D+    +L++ A  + L       +    
Sbjct: 121 GLKVQTIHALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLAVLLQAAAAPDSAAG 180

Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218
           +A    +  + D     ++ +  + R   
Sbjct: 181 RALTLAMTSAADVTFREVVQEACTRRDRF 209


>gi|319407899|emb|CBI81553.1| ATP-dependent nuclease subunit A [Bartonella schoenbuchensis R1]
          Length = 1151

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 124/207 (59%), Gaps = 7/207 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             Q  A+ P  + WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T AAA+ M  R
Sbjct: 12  DAQKKATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTNAAASVMQSR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +++W+ L+DE L   +++++ K  N   ++ AR L    LETPGGLK+QTIHAFCE
Sbjct: 72  IFRTLSSWNELNDEQLQTVLSQLENKPTNTQKLAHARKLFARALETPGGLKIQTIHAFCE 131

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           A++ QFPLE+NI  HF + D+    +L+ +A+   LA      +  ++ A  E+ +  ++
Sbjct: 132 ALLHQFPLESNIAGHFELLDDTNRTQLLHQARCQLLA------HSHIQSALKELFKTISE 185

Query: 202 EDIETLISDIISNRTALK-LIFFFFSY 227
              + L+ +    +  L   + F  S 
Sbjct: 186 STFDQLLHEAAQKQHELSDFLPFILSE 212


>gi|92115690|ref|YP_575419.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91798584|gb|ABE60959.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter
           hamburgensis X14]
          Length = 1162

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 112/200 (56%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
              + Q  ASDP  S +VSANAGSGKTH+LVQRV+RLLL    P+ +LC+T TKAAAA M
Sbjct: 10  DASARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNGVDPARILCITFTKAAAANM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           S RV   +  W  L DE L+A +      +P+     +AR L    LETPGGLKVQTIHA
Sbjct: 70  SERVFSTLGHWVTLDDEALNAALRDTGIAQPDAWSRQRARKLFAAALETPGGLKVQTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++QQFP EA + + F++ DE     ++E A  S +     + +    +A    +  
Sbjct: 130 LCTRLLQQFPFEARVPARFSVLDERDQTGMMERASISVMLDASQNPDSPAGRALQYAMGA 189

Query: 199 SNDEDIETLISDIISNRTAL 218
           + D  +  +++    +R   
Sbjct: 190 AADTTLRDVVNQACLSRDHF 209


>gi|319404939|emb|CBI78541.1| ATP-dependent nuclease subunit A [Bartonella sp. AR 15-3]
          Length = 1151

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 82/210 (39%), Positives = 126/210 (60%), Gaps = 7/210 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ PT S WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T AAA+ M  R+ 
Sbjct: 14  QAKATHPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +++W+   D+ L   ++ ++ K  N   ++ AR L    LETPGGLK+QT HAFCE++
Sbjct: 74  CTLSSWNEFDDKQLQTILSNLEDKPANAQKLANARQLFARALETPGGLKIQTFHAFCESL 133

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + QFPLEANI  HF + D+   KKL+++A++  L       + + +    ++ +I ++  
Sbjct: 134 LHQFPLEANIAGHFELLDDINRKKLLQQARRKLLT------HRDAQLVLKKLFKIISENT 187

Query: 204 IETLISDIISNRTALKLIF-FFFSYLWRRK 232
           +  L+ +    +  L   F F FS   + K
Sbjct: 188 LYQLLYEAAQKQHELSDFFPFIFSESGKEK 217


>gi|188584140|ref|YP_001927585.1| double-strand break repair helicase AddA [Methylobacterium populi
           BJ001]
 gi|179347638|gb|ACB83050.1| double-strand break repair helicase AddA [Methylobacterium populi
           BJ001]
          Length = 1147

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 120/199 (60%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK+ Q  A+DP  SAWVSANAG+GKT +L  RVLRLLL  A P  +LCLT TKAAAA MS
Sbjct: 14  TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W  L D  L+AE+ ++ G++P +  +  AR L    +ETPGGLK++T+HA 
Sbjct: 74  IRVFQRLGRWVTLDDAALTAELIELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++  FP EAN+ + F + D+ QS++  E    + LA   L N++ L  AF  +   +
Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAFLGNDQTLSDAFAVVGAEA 193

Query: 200 NDEDIETLISDIISNRTAL 218
           + + +   I   +  R   
Sbjct: 194 SGDTLREAIRAAMRTRALF 212


>gi|329891017|ref|ZP_08269360.1| double-strand break repair helicase AddA [Brevundimonas diminuta
           ATCC 11568]
 gi|328846318|gb|EGF95882.1| double-strand break repair helicase AddA [Brevundimonas diminuta
           ATCC 11568]
          Length = 1119

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 120/201 (59%), Gaps = 3/201 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP RS +V+ANAGSGKT  LV RV RLLL  A PS +LC+T+TKAAAAEM  R+ 
Sbjct: 12  QSRAADPARSVFVTANAGSGKTSTLVNRVARLLLGGAAPSAILCVTYTKAAAAEMQARLF 71

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           E +  W+ + D  LSAE+ K+    P   N + +S+AR L    LETPGGLK+QTIHAFC
Sbjct: 72  ETLGKWAVMDDGELSAELAKLDDSDPAALNPARLSEARRLFARALETPGGLKIQTIHAFC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           E ++++FP+EA ++  F + + E +  L   A++    + + D    + +A+       +
Sbjct: 132 EKLLRRFPIEAGVSPRFTVLENEAAIALSHAAREDLARAALADAEGPVGEAYSHFAVELD 191

Query: 201 DEDIETLISDIISNRTALKLI 221
               + L++ I + R  L   
Sbjct: 192 WGRFQDLLALIEAKRAELTDY 212


>gi|86136735|ref|ZP_01055313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. MED193]
 gi|85826059|gb|EAQ46256.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. MED193]
          Length = 1122

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 7/218 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM 
Sbjct: 12  ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHILCLTYTKAAASEMQ 71

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +R+ + +  W+ L D  L+A + ++        D+++AR L    +ETPGGLK+QTIH+F
Sbjct: 72  NRLFQRLGEWAMLQDSELTAALGELGEVNTASEDLAQARTLFARAIETPGGLKIQTIHSF 131

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C +++++FPLEA ++  F+  ++  +  L  E  +            +       +    
Sbjct: 132 CSSLLRRFPLEAGVSPQFSEMEDRAASLLRAEIVEDM-------AKRDHAHLVEPLARHV 184

Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
              D E L + I   R   ++   + + L R  + E+ 
Sbjct: 185 GGSDFEDLTAAICQRRAEFEIALDWPALLARFDLPEEF 222


>gi|121601832|ref|YP_989604.1| double-strand break repair helicase AddA [Bartonella bacilliformis
           KC583]
 gi|120614009|gb|ABM44610.1| double-strand break repair helicase AddA [Bartonella bacilliformis
           KC583]
          Length = 1155

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 126/215 (58%), Gaps = 6/215 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             Q  A+ PT S WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+TKAAAA M  R
Sbjct: 12  DAQATATHPTTSVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTKAAAAVMQSR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +++WS L D  L   +++++ K  N   ++ AR L    LETPGGLK+QTIHAFCE
Sbjct: 72  IFRTLSSWSELDDHQLQTILSRLENKPVNAQKLTYARQLFARALETPGGLKIQTIHAFCE 131

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           A++ QF LEANI  HF + D+   KKL+++A+   L       +++ +    ++ +I ++
Sbjct: 132 ALLHQFSLEANIAGHFELLDDISRKKLLQQARCQLLI------HDDAQSLLKQLFKIISE 185

Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           E    L+ +    +        F  Y    + + +
Sbjct: 186 ETFNQLLHEATQKQHEFSDFLSFILYENGEEQLRQ 220


>gi|296532162|ref|ZP_06894922.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296267510|gb|EFH13375.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 943

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/212 (37%), Positives = 125/212 (58%), Gaps = 6/212 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
              SET+   +  ++ Q  ASDP  SAWV A+AGSGKT +L  RVLRLLL   A P  +L
Sbjct: 17  SAMSETLTPRAAAQAAQRRASDPRASAWVGASAGSGKTKVLTDRVLRLLLRPGAKPGRIL 76

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           CLT TKAAAAEM+ R+ + +  W+   D  LS  +  + G+KP+ +   +AR L   +LE
Sbjct: 77  CLTFTKAAAAEMATRLAKRLGEWAVAEDTALSDSLLSLTGEKPDAALRRRARGLFAEVLE 136

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            PGG+++ TIH+FC+++++ FPLEA +   FA+ +E  + +++ E+++  LAS  L    
Sbjct: 137 QPGGMRISTIHSFCQSLLRGFPLEAGLPPQFALIEEADAAEMLAESRELALASGQL---- 192

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTAL 218
             + A   +  + + ED    +  ++  R  L
Sbjct: 193 -PQAAIEAMAGLGSPEDFAQTLQSLVKERERL 223


>gi|126460955|ref|YP_001042069.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102619|gb|ABN75297.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
           17029]
          Length = 1106

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 7/201 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            +    Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 6   DEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+   +  W+ L D  L   +  +         +++AR L    +ETPGGL++QTIH
Sbjct: 66  MQNRLFRRLGEWAMLDDAELRHALDTLGVAAVGHEVLAQARRLFARAIETPGGLRIQTIH 125

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++++FPLEA ++  F   D+  ++ L EE  +     I             ++  
Sbjct: 126 SFCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEELADRIAPG-------VVADLAR 178

Query: 198 ISNDEDIETLISDIISNRTAL 218
               ED   L  ++  N   L
Sbjct: 179 AYTGEDFGALAEEVARNAAGL 199


>gi|163742590|ref|ZP_02149976.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384175|gb|EDQ08558.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 1122

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 5/202 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM 
Sbjct: 7   ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQ 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKVQTIHA 138
           +R+ + +  W+ L D+ L++ +T++      +   M++AR L    +ETPGGLK+QTIH+
Sbjct: 67  NRLFKRLGEWAMLGDDALTSALTELGAHDVISAEGMAQARTLFARAIETPGGLKIQTIHS 126

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC +++++FPLEA ++  F+  D+  +  L  E     + +I    N         +   
Sbjct: 127 FCASLLRRFPLEAGVSPQFSEMDDRAAVLLRGE----VVEAIANSENPGEAGLIARLARQ 182

Query: 199 SNDEDIETLISDIISNRTALKL 220
             D D +TL + I   R+  ++
Sbjct: 183 VTDSDFDTLTAAICQRRSDFEV 204


>gi|126724545|ref|ZP_01740388.1| ATP-dependent DNA helicase, UvrD/Rep family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126705709|gb|EBA04799.1| ATP-dependent DNA helicase, UvrD/Rep family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 1122

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 114/203 (56%), Gaps = 9/203 (4%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     Q+ A+ P  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA E
Sbjct: 19  NDATEAQVRAAAPMESTWLSANAGSGKTRVLTDRVARLLLEGVPPQKVLCLTYTKAAATE 78

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQT 135
           M +R+   +  W+ L+D  L   + ++  +     K     AR L    +ETPGGLK+QT
Sbjct: 79  MQNRLFSRLGEWAMLADNELRMALDELGVEPIENTKEARRNARTLFARAIETPGGLKIQT 138

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC A++++FPLEA ++  F   D+  +K+L E+  +          N        + 
Sbjct: 139 IHSFCAALLRRFPLEAGVSPQFREMDDRAAKRLREDVLEEL-------ANAPETVVLDDF 191

Query: 196 LEISNDEDIETLISDIISNRTAL 218
           ++  +D+D  +++ +II +R AL
Sbjct: 192 VKHLSDDDPASILMEIIRHRDAL 214


>gi|159045978|ref|YP_001534772.1| double-strand break repair helicase AddA [Dinoroseobacter shibae
           DFL 12]
 gi|157913738|gb|ABV95171.1| double-strand break repair helicase AddA [Dinoroseobacter shibae
           DFL 12]
          Length = 1125

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 113/203 (55%), Gaps = 9/203 (4%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     Q+ A+DPT S W+SANAGSGKT +L  RV RLLL +  P  +LCLT+TKAAA+E
Sbjct: 7   NDATRAQIAAADPTSSVWLSANAGSGKTKVLTDRVARLLLEDVPPERILCLTYTKAAASE 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           M +R+   +  WS L D  L   + +  +   +   +    AR L    +ETPGGLK+QT
Sbjct: 67  MQNRLFRTLGGWSMLDDGDLRRRLAELGLLQVEITAARCRSARTLFARAIETPGGLKIQT 126

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC +++++FP+EA ++  F   D     +L     +              + + + +
Sbjct: 127 IHSFCASLLRRFPMEAGVSPQFTEMDSRAEAELQRAVLRQM-------AEGPGRDSLFAL 179

Query: 196 LEISNDEDIETLISDIISNRTAL 218
            +  ++ ++  L+ +++S+R AL
Sbjct: 180 AQSVDETNLPELMKELLSHREAL 202


>gi|254420948|ref|ZP_05034672.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187125|gb|EDX82101.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
          Length = 1139

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/201 (37%), Positives = 118/201 (58%), Gaps = 3/201 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q++A+DP  + +V+ANAGSGKT  LV RV RLLL    P  +LC+T+TKAAAAEM  R+ 
Sbjct: 6   QIVAADPRLTVFVTANAGSGKTTTLVNRVARLLLDQVDPGAILCVTYTKAAAAEMQARLF 65

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           + +  W+ L D  LS E+ ++    P   D   +S+AR L    LETPGGLK+QTIHAFC
Sbjct: 66  DQLGGWAVLDDAALSRELARLDDGDPQAMDHAALSRARKLFARALETPGGLKIQTIHAFC 125

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           E ++++FPLEA ++  F + +++ +  L   A++    + +   +  +  A+       +
Sbjct: 126 EKLLRRFPLEAGVSPRFTVLEDQAATALSHSAREDLARAAVAAPDGPIGLAYSHFAVELD 185

Query: 201 DEDIETLISDIISNRTALKLI 221
            +  + L+S I + R  L   
Sbjct: 186 WQRFQALLSMIEAKRADLLDY 206


>gi|148251712|ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp.
           BTAi1]
 gi|146403885|gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp.
           BTAi1]
          Length = 1156

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 113/198 (57%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  Q  AS+P  SA+VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA M+ 
Sbjct: 12  RDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMAE 71

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV   +  W  L DE L + I       P+K   + AR L  + LETPGGLKVQTIHA C
Sbjct: 72  RVFSTLGHWVTLDDEALDSAIKSTGIPTPDKKLRASARKLFASALETPGGLKVQTIHALC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             ++QQFP EAN+ + F++ DE    +++E A    L       +  + +A    +  + 
Sbjct: 132 TRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVLLDAARTPDSAVGRALQVAMANAA 191

Query: 201 DEDIETLISDIISNRTAL 218
           D   + ++ +   +R   
Sbjct: 192 DSTFKEVVREACLSRDHF 209


>gi|163738014|ref|ZP_02145430.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
 gi|161388630|gb|EDQ12983.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
          Length = 1122

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 5/202 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM 
Sbjct: 7   ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQ 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKVQTIHA 138
           +R+ + +  W+ L D+ L++ +T++      +   M++AR L    +ETPGGLK+QTIH+
Sbjct: 67  NRLFKRLGEWAMLGDDALTSALTELGAHDVISAEGMAQARTLFARAIETPGGLKIQTIHS 126

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC +++++FPLEA ++  F+  D+  +  L  E     + +I    N         +   
Sbjct: 127 FCASLLRRFPLEAGVSPQFSEMDDRAAVLLRGE----VVEAIANSENPGEAGLIARLARQ 182

Query: 199 SNDEDIETLISDIISNRTALKL 220
             D D +TL + I   R+  ++
Sbjct: 183 VTDSDFDTLTAAICQRRSDFEV 204


>gi|126738527|ref|ZP_01754232.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. SK209-2-6]
 gi|126720326|gb|EBA17032.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. SK209-2-6]
          Length = 1126

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM 
Sbjct: 11  ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHILCLTYTKAAASEMQ 70

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +R+ + +  W+ L D  L+A +  +   +    D+++AR L    +ETPGGLK+QTIH+F
Sbjct: 71  NRLFKRLGEWAMLEDGKLTAALIDLGEVQITGEDLAQARTLFARAIETPGGLKIQTIHSF 130

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C +++++FPLEA ++  F+  ++  +  L  E  +            +       +    
Sbjct: 131 CSSLLRRFPLEAGVSPQFSEMEDRAAALLRAEIVEDF-------AKGDHSHLVEPLARHV 183

Query: 200 NDEDIETLISDIISNRTAL 218
              D E L + I   R   
Sbjct: 184 GGSDFEDLTAAICQRRAEF 202


>gi|304320182|ref|YP_003853825.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis
           HTCC2503]
 gi|303299085|gb|ADM08684.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis
           HTCC2503]
          Length = 1166

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 115/180 (63%), Gaps = 6/180 (3%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPST 64
           +  +D +++T + Q   SDP RSAW+SANAGSGKTH+L+ RV+RLL           PS+
Sbjct: 17  NSALDPLAETTAIQQTVSDPRRSAWLSANAGSGKTHVLIGRVIRLLTDLADGGREIDPSS 76

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +LCLT T AAAAEM +R+ +I+  WS LSDE LS  +T   G+ P    + + R L    
Sbjct: 77  ILCLTFTNAAAAEMKNRLFDILGEWSLLSDEALSDALTTRFGRSPAAPSLMRTRRLFARA 136

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           L+TPGGL+VQTIHAFCE++++QFPLEA +   F++ D+ +   LI   +   L ++  + 
Sbjct: 137 LDTPGGLRVQTIHAFCESLLRQFPLEAGVMPGFSVLDDAEYAALIHRCRWQALRALQAEG 196


>gi|85714148|ref|ZP_01045137.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
 gi|85699274|gb|EAQ37142.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
          Length = 1176

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 113/198 (57%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
              + Q  ASDP  S +VSANAGSGKTH+LVQRV+RLLL +  P+ +LC+T TKAAAA M
Sbjct: 22  DASARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNDVPPARILCITFTKAAAANM 81

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV   +  W  L D  L+A +  +   +P+     +AR L  + LETPGGLKVQTIHA
Sbjct: 82  AERVFSTLGHWITLDDGTLNAALRDVGIAQPDARWRERARKLFASALETPGGLKVQTIHA 141

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++QQFP EA + + FA+ DE    +++E A    +     + +    +A    +  
Sbjct: 142 LCTRLLQQFPFEAEVPARFAVLDERDQTEMMERASLKVMLDASRNPDSPAGRALRYAMGA 201

Query: 199 SNDEDIETLISDIISNRT 216
           + D  +  +IS     R 
Sbjct: 202 AADSTLRDVISQACLGRD 219


>gi|167648808|ref|YP_001686471.1| double-strand break repair helicase AddA [Caulobacter sp. K31]
 gi|167351238|gb|ABZ73973.1| double-strand break repair helicase AddA [Caulobacter sp. K31]
          Length = 1157

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 122/202 (60%), Gaps = 4/202 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DP  SA+V+ANAGSGKT  L+ RV RLLLA + P  +LC+T+TKAAAAEM  R+ 
Sbjct: 5   QRIAADPAISAFVTANAGSGKTKTLIDRVARLLLAGSSPEAILCVTYTKAAAAEMQRRLF 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           E +  W    D  L  ++  ++G++P   +  ++SKAR L    LETPGGLK+QTIHAFC
Sbjct: 65  ERLGEWCVTPDVKLREQLGALEGREPASFDHRELSKARGLFAKALETPGGLKIQTIHAFC 124

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           E ++++FPLEA ++  F + D+  S  + + A +   A+ + D+++   +A+       +
Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDDSASAAIAQGALRQV-ATWVTDHDDAFAQAYARFSVALD 183

Query: 201 DEDIETLISDIISNRTALKLIF 222
               E + +   S R A+    
Sbjct: 184 FASFEAMFATFESQRGAIGEYL 205


>gi|149201424|ref|ZP_01878399.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. TM1035]
 gi|149145757|gb|EDM33783.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. TM1035]
          Length = 1123

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 8/200 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q+ A+ P  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM 
Sbjct: 7   ATQAQVEAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVDPQHILCLTYTKAAASEMQ 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           +R+   + AW+ L+D  L  E+  +       +  +  AR L    +ETPGGLK+QTIH+
Sbjct: 67  NRLFRRLGAWAMLADAALMQELDLLGHEGAITEQTLRDARRLFARAIETPGGLKIQTIHS 126

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC +++++FPLEA++T  F   ++  +  L  E  +   A             FY +   
Sbjct: 127 FCASLLRRFPLEADVTPQFTEMEDRTATLLRAEIVEDLAA-------GPQAATFYALARH 179

Query: 199 SNDEDIETLISDIISNRTAL 218
            + E +E L ++I+ NR+  
Sbjct: 180 YSGETLEKLTAEIVRNRSGF 199


>gi|86747755|ref|YP_484251.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86570783|gb|ABD05340.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris HaA2]
          Length = 1161

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 115/201 (57%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            Q +  Q+LASDP+ S +VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA 
Sbjct: 9   DQARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVPPERILCITFTKAAAAN 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  L D  L+A I     K    S +++AR L    LETPGGLKVQTIH
Sbjct: 69  MAERVFTTLGRWVTLDDAALTAAIKATGIKSVGPSLLAQARKLFACALETPGGLKVQTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A C  ++QQFP EAN+ + F++ D+    +L++ A  + L       +    +A    + 
Sbjct: 129 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLAVLLQAAAAPDSAAGRALALAMT 188

Query: 198 ISNDEDIETLISDIISNRTAL 218
            + D     ++ +   +R   
Sbjct: 189 SAADITFREVVQEACMSRDRF 209


>gi|221641019|ref|YP_002527281.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131]
 gi|221161800|gb|ACM02780.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131]
          Length = 1106

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 7/201 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            +    Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 6   DEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+   +  W+ L D  L   +  +         +++AR L    +ETPGGL++QTIH
Sbjct: 66  MQNRLFRRLGGWAMLDDAELRHALDTLGVAAVGHEVLAQARRLFARAIETPGGLRIQTIH 125

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++++FPLEA ++  F   D+  ++ L EE  +     I             ++  
Sbjct: 126 SFCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEEMADCIAPG-------VVADLAR 178

Query: 198 ISNDEDIETLISDIISNRTAL 218
               ED   L  ++  N   L
Sbjct: 179 AYTGEDFGALAEEVARNAAGL 199


>gi|49473710|ref|YP_031752.1| ATP-dependent nuclease subunit A [Bartonella quintana str.
           Toulouse]
 gi|49239213|emb|CAF25532.1| ATP-dependent nuclease subunit A [Bartonella quintana str.
           Toulouse]
          Length = 1157

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/193 (41%), Positives = 120/193 (62%), Gaps = 6/193 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             Q  A+ P  + WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+TKAAAA M  R
Sbjct: 12  DAQATATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTSPARILCLTYTKAAAAVMQSR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +++W+ L D  L   +++++ K  N   +  AR L    LETPGGLK+QTIHAFCE
Sbjct: 72  IFRTLSSWNELDDTQLQTILSRLENKPINAQKLIYARQLFARALETPGGLKIQTIHAFCE 131

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +++ QF LEANI  HF + D+   KKL++E+++  LA      + + + A  ++L++ N+
Sbjct: 132 SLLHQFMLEANIAGHFELLDDISRKKLLQESRRQLLA------HHDAQSALKQLLKVINE 185

Query: 202 EDIETLISDIISN 214
                L+ +    
Sbjct: 186 HTFNQLLYEATEK 198


>gi|114769726|ref|ZP_01447336.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha
           proteobacterium HTCC2255]
 gi|114549431|gb|EAU52313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha
           proteobacterium HTCC2255]
          Length = 1125

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 118/203 (58%), Gaps = 9/203 (4%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     Q+ A++P ++ WVSANAGSGKT +L  RV RLLL N  P  +LCLT+TKAAAAE
Sbjct: 4   NDATLAQIYAANPIKNTWVSANAGSGKTRVLTDRVARLLLNNTDPQKILCLTYTKAAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQT 135
           M +R+ + +  W+ L DE L  E+  +   +   +   + +AR L    LETPGGLK+QT
Sbjct: 64  MQNRLFDSLGKWAMLPDEELRTELKSLGENENTLSPDKIKQARTLFAAALETPGGLKIQT 123

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC+A++++FPLEA ++  F + +E Q+K+L  E  +           + L K    +
Sbjct: 124 IHSFCDALLRRFPLEAGVSPQFNMLEERQAKQLRIEVVERMAQQSETSEIDMLAKHLTRL 183

Query: 196 LEISNDEDIETLISDIISNRTAL 218
                  + + L ++I+  RT  
Sbjct: 184 -------NTDDLTNEIVKKRTGF 199


>gi|6626267|gb|AAF19532.1| putative helicase 2 [Bradyrhizobium japonicum]
          Length = 591

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/201 (40%), Positives = 111/201 (55%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            + ++ Q +ASDP  SA+VSANAGSGKTH+LVQRV+RLLL+   P  +LC+T TKAAAA 
Sbjct: 10  DEVRARQAVASDPAASAFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAAN 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ RV   +  W  L D  L A I  +    P+     +A  L    LETPGGLKVQTIH
Sbjct: 70  MAERVFTTLGHWVTLDDIALDAAIRAVGIPHPSAKLRREAERLFACALETPGGLKVQTIH 129

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A C  ++QQFP EAN+ + F++ DE     ++E A    L     D       A    + 
Sbjct: 130 ALCTRLLQQFPFEANVPARFSVIDERDQTDMMERANLKVLLEAGADRKRSQAGALLTGMA 189

Query: 198 ISNDEDIETLISDIISNRTAL 218
            + D   + ++ +   +R   
Sbjct: 190 SAADVTFKEVVREACLSRDHF 210


>gi|254453452|ref|ZP_05066889.1| double-strand break repair helicase AddA [Octadecabacter
           antarcticus 238]
 gi|198267858|gb|EDY92128.1| double-strand break repair helicase AddA [Octadecabacter
           antarcticus 238]
          Length = 1128

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 8/202 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
                 Q+ A+DPTRS W+SANAGSGKT +L  RV RLLLA   P  +LCLT+TKAAA+E
Sbjct: 4   DDATRRQIEAADPTRSTWLSANAGSGKTRVLTDRVARLLLAGTRPENVLCLTYTKAAASE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+ + +  W+ ++   L  ++ ++      +   +S AR L  + +ETPGGLK+QTI
Sbjct: 64  MQNRLFQRLGEWAMMAKPALHKQLVELGTDVAIDDDYLSNARTLFASAIETPGGLKIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC  ++++FPLEA ++  F   ++  ++ L EE     L  +   N+ +    F    
Sbjct: 124 HSFCAGVLRRFPLEAEVSPQFKEMEDRDAQLLREE----VLDEMATGNHADEVAGFA--- 176

Query: 197 EISNDEDIETLISDIISNRTAL 218
                 ++   ++ I S R+A 
Sbjct: 177 RHYTGAEVGNFLAAITSRRSAF 198


>gi|49474856|ref|YP_032897.1| ATP-dependent nuclease subunit A [Bartonella henselae str.
           Houston-1]
 gi|49237661|emb|CAF26843.1| ATP-dependent nuclease subunit A [Bartonella henselae str.
           Houston-1]
          Length = 1160

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 79/197 (40%), Positives = 120/197 (60%), Gaps = 6/197 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             Q  A+ P  + WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+TKAAAA M  R
Sbjct: 12  DAQATATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTKAAAAVMQSR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +++W+ L D  L   +++++ K      ++ AR L    LETPGGLK+QTIHAFCE
Sbjct: 72  IFRTLSSWNELDDTQLQQTLSQLENKPITAQKLTYARQLFARALETPGGLKIQTIHAFCE 131

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +++  F LEANI  HF + D+   KKL++EA++  L       +E  + A  ++L++ ++
Sbjct: 132 SLLHHFMLEANIAGHFELVDDISRKKLLQEARRQLLE------HESAQSALKQLLKVISE 185

Query: 202 EDIETLISDIISNRTAL 218
                L+ +    +  L
Sbjct: 186 HTFNQLLYEATEKQHKL 202


>gi|85705745|ref|ZP_01036842.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. 217]
 gi|85669735|gb|EAQ24599.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. 217]
          Length = 1123

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 75/200 (37%), Positives = 111/200 (55%), Gaps = 8/200 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q+ A+ P  S W+SANAGSGKT +L  RV RLLL   +P  +LCLT+TKAAA+EM 
Sbjct: 7   ATQAQVEAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVNPQHILCLTYTKAAASEMQ 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           +R+   + AW+ L+D+ L  E+  +          +  AR L    +ETPGGLK+QTIH+
Sbjct: 67  NRLFRRLGAWAMLADDALMQELDLLGHEGAITDQTLRDARRLFARAIETPGGLKIQTIHS 126

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC +++++FPLEA +T  F   ++  +  L  E  +   A             FY +   
Sbjct: 127 FCASLLRRFPLEAGVTPQFTEMEDRTATLLRAEIVEDLAA-------GPHAATFYALARH 179

Query: 199 SNDEDIETLISDIISNRTAL 218
            + E +E L +DI+ +RT  
Sbjct: 180 YSGETLEKLTADIVRHRTGF 199


>gi|294675594|ref|YP_003576209.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
 gi|294474414|gb|ADE83802.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
          Length = 1121

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 8/202 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     Q+ A+DP  S W++ANAGSGKT +L  RV RLLLA   P  +LCLT+TKAAAAE
Sbjct: 5   NPASERQVQAADPAASTWLAANAGSGKTKVLTDRVARLLLAGTEPQKVLCLTYTKAAAAE 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+L+ +  W+ L D  L A++  +    P +   +++AR L    +ETPGGLK+QTI
Sbjct: 65  MQNRLLKRLGDWAMLPDADLRAQLAALGECGPLDAESLARARRLFAQAIETPGGLKIQTI 124

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFC A++++FPLEA ++  FA  D+  + ++ EE     L  I    +  +   F   L
Sbjct: 125 HAFCGALLRRFPLEAGVSHGFAEIDDRTAARMREE----VLEEIASGPDRPVLDLF---L 177

Query: 197 EISNDEDIETLISDIISNRTAL 218
           +     D+  +I++I  +R A 
Sbjct: 178 QAFTGADLTGMIAEISHDRDAF 199


>gi|21328716|gb|AAM48722.1| helicase, UvrD/Rep family [uncultured marine proteobacterium]
          Length = 1118

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 72/198 (36%), Positives = 111/198 (56%), Gaps = 8/198 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +S     Q+ A+ P RS W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+
Sbjct: 3   LSDASLRQIEAAHPGRSTWLAANAGSGKTRVLTDRVARLLLDGVMPQNILCLTYTKAAAS 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQT 135
           EM +R+ + +  W+ L D  L  E+  +   +     D+ +AR L    +E PGGLK+QT
Sbjct: 63  EMQNRLFKRLGRWTMLDDVTLLDELAALGVERDLGPDDIDRARTLFARAVEAPGGLKIQT 122

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC AI+++F LEA +   F   DE     L++E  ++         + + + +F  I
Sbjct: 123 IHSFCAAILRRFSLEAGVNPQFVEIDERAQNLLLDEVVEAI-------ADGQGQSSFDGI 175

Query: 196 LEISNDEDIETLISDIIS 213
            E     D++  +  I++
Sbjct: 176 AEHFTGPDLQKFLHAILN 193


>gi|254465049|ref|ZP_05078460.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
           Y4I]
 gi|206685957|gb|EDZ46439.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
           Y4I]
          Length = 1117

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 7/199 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM 
Sbjct: 7   ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHVLCLTYTKAAASEMQ 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +R+ + +  W+ L D  L+  +T++        D+++AR L    +ETPGGLK+QTIH+F
Sbjct: 67  NRLFKRLGEWAMLEDAALTDALTELGEVSTAVEDLAQARTLFARAIETPGGLKIQTIHSF 126

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C +++++FPLEA ++  F+  D+   + L  E  +                    +    
Sbjct: 127 CSSLLRRFPLEAGVSPQFSEMDDRAGQLLRAEIMEDF-------AQGPHASQVDALARHV 179

Query: 200 NDEDIETLISDIISNRTAL 218
           +D D E L + I   R   
Sbjct: 180 SDSDFEMLTAAICQRRADF 198


>gi|146278983|ref|YP_001169142.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557224|gb|ABP71837.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1119

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 7/201 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            +    Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 20  DEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASE 79

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+   +  W+ L D  L A +  +  +      +++AR L    +ETPGGL++QTIH
Sbjct: 80  MQNRLFRRLGEWAMLEDAALRAALDALGVEAVGHEVLAQARRLFARAIETPGGLRIQTIH 139

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++++FPLEA ++  F   D+  ++ L +E  +          +        E+  
Sbjct: 140 SFCATLLRRFPLEAGVSPQFTELDDRAARLLRDEILEEM-------ADRTAPALVAELAR 192

Query: 198 ISNDEDIETLISDIISNRTAL 218
               E+   L  ++  NR  L
Sbjct: 193 AYTGEEFGALAEEVARNRAGL 213


>gi|254439061|ref|ZP_05052555.1| double-strand break repair helicase AddA [Octadecabacter
           antarcticus 307]
 gi|198254507|gb|EDY78821.1| double-strand break repair helicase AddA [Octadecabacter
           antarcticus 307]
          Length = 1128

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 117/202 (57%), Gaps = 8/202 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     Q+ A+DPT+S W+SANAGSGKT +L +RV RLLLA   P  +LCLT+TKAAA+E
Sbjct: 4   NDATRRQIEAADPTQSTWLSANAGSGKTRVLTERVARLLLAGTRPENVLCLTYTKAAASE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTI 136
           M +R+ + +  W+ +    L  ++ ++  +     D +S AR L  + +ETPGGLK+QTI
Sbjct: 64  MQNRLFQRLGEWAMMPKPALHKQLVELGTEAAIDDDYLSNARTLFASAIETPGGLKIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC  ++++FPLEA ++  F   ++  ++ L E    + L  +   ++ +   A     
Sbjct: 124 HSFCAGVLRRFPLEAEVSPQFKEMEDRAAQLLRE----NVLDEMATGDHAD---AVAGFA 176

Query: 197 EISNDEDIETLISDIISNRTAL 218
                 ++   ++ I + R+A 
Sbjct: 177 RHYTGAEVGKFLAAITARRSAF 198


>gi|298290318|ref|YP_003692257.1| double-strand break repair helicase AddA [Starkeya novella DSM 506]
 gi|296926829|gb|ADH87638.1| double-strand break repair helicase AddA [Starkeya novella DSM 506]
          Length = 1144

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 4/214 (1%)

Query: 10  HSETIDL----ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            SE  DL    +    + Q  ASDP  SAWVSANAGSGKTH+L +RV+RLL+    P  +
Sbjct: 1   MSELTDLAPGPLRAATALQTTASDPLLSAWVSANAGSGKTHVLARRVIRLLMRGVPPGRI 60

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           LCLT+TKAAAA M++RVL+ +  W+ L DE L  EI +  G +P+    + AR L    L
Sbjct: 61  LCLTYTKAAAANMANRVLDELRRWATLDDETLDKEIVRTDGGRPDALRRAHARRLFAQAL 120

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           ETPGGLK+QTIHAFC A++  FP EA + + F   +E    +L+   +   +        
Sbjct: 121 ETPGGLKIQTIHAFCGALLHAFPFEAGVPAGFGELEEAARLELLARVRADVVLEAAGRPE 180

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALK 219
             L +A   I+  ++D+ I+ +I  ++++  AL+
Sbjct: 181 SALGQALGLIVGTTSDDGIDEIIGAMVADPAALE 214


>gi|146337257|ref|YP_001202305.1| helicase-exonuclease type V family protein AddA subunit
           [Bradyrhizobium sp. ORS278]
 gi|146190063|emb|CAL74055.1| putative helicase-exonuclease type V protein family, addA subunit
           [Bradyrhizobium sp. ORS278]
          Length = 1156

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 112/198 (56%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  Q  AS+P  SA+VSANAGSGKTH+LVQRV+RLLL    P  +LC+T TKAAAA M+ 
Sbjct: 12  RDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMAE 71

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV   +  W  L D  L + I        +K   + AR L  + LETPGGLKVQTIHA C
Sbjct: 72  RVFSTLGHWVTLDDGALDSAIKSTGILTSDKKLRASARKLFASALETPGGLKVQTIHALC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             ++QQFP EAN+ + F++ DE    +++E A    L +     +  + +A    +  + 
Sbjct: 132 TRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVLLNAARAPDSPIGRALQIAMANAA 191

Query: 201 DEDIETLISDIISNRTAL 218
           D   + ++ +   +R   
Sbjct: 192 DSTFKEVVREACLSRDHF 209


>gi|296448609|ref|ZP_06890479.1| double-strand break repair helicase AddA [Methylosinus
           trichosporium OB3b]
 gi|296253881|gb|EFH01038.1| double-strand break repair helicase AddA [Methylosinus
           trichosporium OB3b]
          Length = 1145

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/207 (44%), Positives = 137/207 (66%), Gaps = 1/207 (0%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S+   +   T+ +Q +ASDP  SAWVSA+AGSGKTH+L QRV+RLLLA A PS +LCLT
Sbjct: 1   MSDRRPIAQDTREKQRIASDPGLSAWVSAHAGSGKTHVLSQRVVRLLLAGASPSHILCLT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           +TKAAAA M+ R+ +I+  W+ L DE L+A I      +P  +D+++AR L    +ETPG
Sbjct: 61  YTKAAAANMAARIFDILAGWALLDDEALAAAIMATGAPRPFPADLARARKLFAHAVETPG 120

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           GLK+QTIHAFCE ++  FP EAN+++ F + D+ +  +L+E A+++TLA   LD    L+
Sbjct: 121 GLKIQTIHAFCERLLHLFPFEANVSASFRVLDDLERAELLERARRNTLARAALDGG-ALQ 179

Query: 190 KAFYEILEISNDEDIETLISDIISNRT 216
            A  ++  + +    + LI +++  R 
Sbjct: 180 GALAKLSRLCSGGGFDDLIRELLGRRE 206


>gi|240849707|ref|YP_002971095.1| double-strand break repair helicase AddA [Bartonella grahamii
           as4aup]
 gi|240266830|gb|ACS50418.1| double-strand break repair helicase AddA [Bartonella grahamii
           as4aup]
          Length = 1158

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/193 (40%), Positives = 120/193 (62%), Gaps = 6/193 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             Q  A+ P ++ WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T+AAAA M  R
Sbjct: 12  DAQATATHPQKNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTRAAAAVMQSR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +++W+ L D  L   +T+ + K  N   ++ AR L    LETPGGLK+QTIHAFCE
Sbjct: 72  IFRTLSSWNELDDAQLQETLTRFEKKTVNAQKLTYARQLFARALETPGGLKIQTIHAFCE 131

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +++ QF LEANI  HF + DE   KKL++E+++  LA        +++ A  ++ ++ ++
Sbjct: 132 SLLHQFMLEANIAGHFELPDEISRKKLLQESRRQLLAR------RDVQPALQQLFKVISE 185

Query: 202 EDIETLISDIISN 214
                L+ +    
Sbjct: 186 HTFNQLLYEATEK 198


>gi|149912864|ref|ZP_01901398.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. AzwK-3b]
 gi|149813270|gb|EDM73096.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. AzwK-3b]
          Length = 1123

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 110/202 (54%), Gaps = 8/202 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
                 Q+ A+ P RS W+SANAGSGKT +L  RV RLLL +  P  +LCLT+TKAAA+E
Sbjct: 4   DDATQRQIDAARPDRSTWLSANAGSGKTRVLTDRVARLLLEDVDPRHILCLTYTKAAASE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+ + +  W+ L D+ LS E+  +      +   + KAR L    +E PGGLK+QTI
Sbjct: 64  MQNRLFKRLGQWAMLPDDRLSRELQDLGHEGLIDADTLRKARRLFARAIEAPGGLKIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC  ++++FPLEA ++  F   ++  +  L  E  ++         +       Y   
Sbjct: 124 HSFCAGLLRRFPLEAGVSPQFTEMEDRTASLLRSEITEAI-------ASGPDAATLYAFA 176

Query: 197 EISNDEDIETLISDIISNRTAL 218
                E ++ + ++I+ +RT  
Sbjct: 177 RHYGGESLDDITAEIVRHRTLF 198


>gi|163867331|ref|YP_001608525.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476]
 gi|161016972|emb|CAK00530.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476]
          Length = 1157

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/193 (40%), Positives = 121/193 (62%), Gaps = 6/193 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             Q  A+ P ++ WVSANAGSGKTH+L +RV+RLLL    P+ +LCLT+T+AAAA M  R
Sbjct: 12  DAQATATHPQKNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTRAAAAVMQSR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +++W+ L D  L   +T+ + K  N   ++ AR L    LETPGGLK+QTIHAFCE
Sbjct: 72  IFRTLSSWNELDDAQLQETLTRFENKPVNAQKLTYARQLFARALETPGGLKIQTIHAFCE 131

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +++ QF LEANI  HF + D+   +KL +E++   LA        +++ A  ++L++ ++
Sbjct: 132 SLLHQFMLEANIAGHFELPDDISREKLRQESRCQLLAR------RDVQPALQQLLQVISE 185

Query: 202 EDIETLISDIISN 214
            +   L+ + +  
Sbjct: 186 HNFNQLLYEAVEK 198


>gi|83942010|ref|ZP_00954472.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
           sp. EE-36]
 gi|83847830|gb|EAP85705.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
           sp. EE-36]
          Length = 1125

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 104/202 (51%), Gaps = 8/202 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
                 Q+ A+ P  S W+ ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 6   DDATRAQIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNGVEPQHILCLTYTKAAASE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+ + + AW+ L+D  L   ++++  K       +  AR L    +ETPGGLK+QTI
Sbjct: 66  MQNRLFKRLGAWAMLTDADLRHSLSELGVKDGFTPEKLRMARTLFARAIETPGGLKIQTI 125

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++++FPLEA ++  F   ++  +  L  E   +           +       + 
Sbjct: 126 HSFCASLLRRFPLEAGVSPQFTEIEDRAADLLRAEIVDTM-------AEGQDAALITTLA 178

Query: 197 EISNDEDIETLISDIISNRTAL 218
            +   ED   L   I+  R   
Sbjct: 179 RMYTGEDFSKLTRSIVGQREGF 200


>gi|83953059|ref|ZP_00961781.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83842027|gb|EAP81195.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 1125

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 8/202 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
                 Q+ A+ P  S W+ ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 6   DDATRAQIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNGVEPQHILCLTYTKAAASE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+ + + AW+ L+D  L   ++++  +       +  AR L    +ETPGGLK+QTI
Sbjct: 66  MQNRLFKRLGAWAMLTDADLRHSLSELGVEDGFTPEKLRMARTLFARAIETPGGLKIQTI 125

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++++FPLEA ++  F   ++  +  L  E   +           +       + 
Sbjct: 126 HSFCASLLRRFPLEAGVSPQFTEIEDRAADLLRAEIVDTM-------AEGQDAALITTLA 178

Query: 197 EISNDEDIETLISDIISNRTAL 218
            +   ED   L   I+  R   
Sbjct: 179 RMYTGEDFSKLTRSIVGQREGF 200


>gi|315497132|ref|YP_004085936.1| double-strand break repair helicase adda [Asticcacaulis excentricus
           CB 48]
 gi|315415144|gb|ADU11785.1| double-strand break repair helicase AddA [Asticcacaulis excentricus
           CB 48]
          Length = 1168

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 14/230 (6%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+DP  S +++ANAGSGKT  LV RV RLLL  A P  +LC+T+TKAAAAEM  R+ 
Sbjct: 4   QNAAADPEVSCFLTANAGSGKTSTLVNRVARLLLRGAKPEHILCVTYTKAAAAEMQGRLY 63

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           E +  W+   D  L+ E+ KI     N  D++ AR L    LETPGGLK+QTIHAFCE +
Sbjct: 64  ERLGGWAVAEDAALAEELRKIDE---NPDDLATARALFAKALETPGGLKIQTIHAFCEKL 120

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA-----FYEIL-- 196
           +++FPLEA ++  F + D+  ++ L ++A +  L      + + L +      F ++L  
Sbjct: 121 LRRFPLEAGLSPSFQVLDDLVARDLAQKALEGLLTLPEGAHRDHLIRTLKAQKFEQLLTQ 180

Query: 197 ----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
                    E ++ L++D   N  +     F    L      E+ + + A
Sbjct: 181 FIYQHDRIREALDHLLADAKRNDLSFSGYLFKRLDLDPPMTPEQVVDAFA 230


>gi|163732946|ref|ZP_02140390.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och
           149]
 gi|161393481|gb|EDQ17806.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och
           149]
          Length = 1125

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 108/202 (53%), Gaps = 8/202 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM
Sbjct: 6   PATQAQVDAARPDASTWLAANAGSGKTRVLTDRVARLLLDKVEPEHILCLTYTKAAASEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIH 137
            +R+ + +  W+ L D  L+  +  +  +   +   + KAR L    +ETPGGLK+QTIH
Sbjct: 66  QNRLFKRLGEWAMLEDAALAEALRDLGVETTVDAEKLRKARTLFARAIETPGGLKIQTIH 125

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC +++++FPLEA ++  F+  +E  +  L  E   +                  ++  
Sbjct: 126 SFCASLLRRFPLEAGVSPQFSEIEERAADLLRAEIIDTM-------AQGPDAGLIADLAR 178

Query: 198 ISNDEDIETLISDIISNRTALK 219
               ED E L   ++ N+ + +
Sbjct: 179 HYTGEDFEKLAKAVVQNKDSFR 200


>gi|126734388|ref|ZP_01750135.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. CCS2]
 gi|126717254|gb|EBA14118.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter
           sp. CCS2]
          Length = 1112

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/217 (35%), Positives = 118/217 (54%), Gaps = 14/217 (6%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q+ A+DP  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAAAEM 
Sbjct: 6   ATQRQVDAADPRISTWLSANAGSGKTRVLTDRVARLLLEEVSPQNILCLTYTKAAAAEMQ 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           +R+ + + AW+ +SD  LSAE+  +   ++ + S +S+AR L    +ETPGGLK+QTIH+
Sbjct: 66  NRLFQRLGAWAMMSDTELSAELLALGVDRQIDSSQLSQARTLFARAIETPGGLKIQTIHS 125

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  ++++FPLEA ++  F   ++  ++ L  E     +               + +L  
Sbjct: 126 FCAGVLRRFPLEAQVSPQFREMEDRAAQILRAEVVDEMVM-------GPQANVVHSLLAH 178

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
               +++   ++I   R       +F     R  I E
Sbjct: 179 FTGSELDQFTAEIAGKRE------YFLQKPDRNAISE 209


>gi|114762246|ref|ZP_01441714.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114545270|gb|EAU48273.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
           sp. HTCC2601]
          Length = 1125

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 9/202 (4%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            +    Q+ A+ P  S W+SANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA E
Sbjct: 4   DEATEAQVRAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVLPEHILCLTYTKAAATE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTI 136
           M +R+   + AW+ L DE L AE+ ++    P     ++ AR L    +ETPGGL++QTI
Sbjct: 64  MQNRLFRRLGAWAMLDDEALGAELRQLGLDGPLPPERLAGARTLFARAIETPGGLRIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++++FPLEA ++  F   ++  ++ L  E            +    +    E+ 
Sbjct: 124 HSFCASLLRRFPLEAGVSPQFHEMEDRAAQLLRAEVLDRL-------SEGPQQALVAELA 176

Query: 197 EISNDEDIETLISDIISNRTAL 218
               D D + L++++   + A 
Sbjct: 177 RHLTD-DPDKLLAEMCRTKEAF 197


>gi|56698684|ref|YP_169061.1| ATP-dependent DNA helicase UvrD [Ruegeria pomeroyi DSS-3]
 gi|56680421|gb|AAV97087.1| ATP-dependent DNA helicase, UvrD/Rep family [Ruegeria pomeroyi
           DSS-3]
          Length = 1118

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 12/228 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     Q+ A+ P  S W++ANAGSGKT +L  RV RLLL++  P  +LCLT+TKAAA+E
Sbjct: 5   NAATERQVQAARPDTSTWLAANAGSGKTKVLTDRVARLLLSDVQPQHILCLTYTKAAASE 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+ + +  W+ L+D  L A+++ +      + + ++ AR L    +ETPGGLK+QTI
Sbjct: 65  MQNRLFKRLGEWAMLADAPLRAQLSDLGVPGAIDDARLAHARTLFARAIETPGGLKIQTI 124

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC  ++++FPLEA ++  F+  ++  +  L EE  +   A               ++ 
Sbjct: 125 HSFCATLLRRFPLEAKVSPQFSEMEDRAAALLREEIVEDLAA-------GPQAALVSDLA 177

Query: 197 EISNDEDIETLISDIISNRTA----LKLIFFFFSYLWRRKIIEKSLWS 240
               D D  +L + I   R A    L        +        ++L S
Sbjct: 178 RHITDTDFASLTAAICQQRAAFAQPLDWAGLLTLFDLPEGFDTQALLS 225


>gi|260429599|ref|ZP_05783576.1| double-strand break repair helicase AddA [Citreicella sp. SE45]
 gi|260420222|gb|EEX13475.1| double-strand break repair helicase AddA [Citreicella sp. SE45]
          Length = 1118

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 112/202 (55%), Gaps = 9/202 (4%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            +    Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA E
Sbjct: 4   DEATEAQVRAARPDSSTWLAANAGSGKTRVLTDRVARLLLDGVLPEHILCLTYTKAAATE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+   + AW+ L DE L AE+ ++          ++ AR L    +ETPGGL++QTI
Sbjct: 64  MQNRLFRRLGAWAMLDDEALRAELRQLGLEGALPPERLAGARTLFARAIETPGGLRIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++++FPLEA ++  F   ++  ++ L  E     L  +       L     + L
Sbjct: 124 HSFCASLLRRFPLEAGVSPQFHEMEDRAAQLLRTE----VLDRLSEGPQAGLVADLAQWL 179

Query: 197 EISNDEDIETLISDIISNRTAL 218
                E+ + L++++  NR A 
Sbjct: 180 P----ENYDALLAELCGNRAAF 197


>gi|126732963|ref|ZP_01748724.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula
           stellata E-37]
 gi|126706580|gb|EBA05656.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula
           stellata E-37]
          Length = 1123

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 114/204 (55%), Gaps = 8/204 (3%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  +    Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    PS +LCLT+TKAAA
Sbjct: 1   MRDEATQRQVDAAAPDASTWLAANAGSGKTRVLTDRVARLLLEGVDPSHILCLTYTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQ 134
            EM +R+ + + AW+ L +  L  E+  +  +  P+ + + +AR L    +ETPGGL++Q
Sbjct: 61  TEMQNRLFKRLGAWAMLPEPDLRDELAALGVETAPSHAFLQEARTLFARAIETPGGLRIQ 120

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+FC +++++FPLEA ++  F   ++  ++ L  E     L  I    +   +     
Sbjct: 121 TIHSFCASLLRRFPLEARVSPQFQEMEDRAAELLRAE----ILDQIASGPD---RGLLEG 173

Query: 195 ILEISNDEDIETLISDIISNRTAL 218
           I    + +D   L++ + + R   
Sbjct: 174 IAPWVSGDDPGKLLAALSARRDVF 197


>gi|254488041|ref|ZP_05101246.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101]
 gi|214044910|gb|EEB85548.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101]
          Length = 1125

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 12/204 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
                 Q+ A+ P  S W+ ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 6   DDATRAQIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNEVEPQHILCLTYTKAAASE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+ + + AW+ L D  L A + ++          +  AR L    +ETPGGLK+QTI
Sbjct: 66  MQNRLFKRLGAWAMLKDADLRASLAELGVTDAFTPEKLRMARTLFARAIETPGGLKIQTI 125

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYE 194
           H+FC +++++FPLEA ++  F   ++  +  L  E           DN  E + A     
Sbjct: 126 HSFCASLLRRFPLEAGVSPQFTEIEDRAADLLRAEIV---------DNMAEGRDAPLVTA 176

Query: 195 ILEISNDEDIETLISDIISNRTAL 218
           +      ED   L + I+  R   
Sbjct: 177 LARHYTGEDFSKLTNSIVGQREGF 200


>gi|254463307|ref|ZP_05076723.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
           HTCC2083]
 gi|206679896|gb|EDZ44383.1| double-strand break repair helicase AddA [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 1122

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 8/206 (3%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ++  +     Q+ A+ P  S W+SANAGSGKT +L  RV RLLLA   P  +LCLT+TKA
Sbjct: 1   MNARNDASQAQVDAARPRMSTWLSANAGSGKTRVLTDRVARLLLAQVPPERILCLTYTKA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLK 132
           AAAEM +R+ + +  W+ L +  L   + ++  +   +K+ +  AR L    +E PGGLK
Sbjct: 61  AAAEMQNRLFKRLGEWAMLENSALREALRELGEEGGIDKNALRMARTLFAAAIEAPGGLK 120

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +QTIH+FC  ++++FPLEAN++  FA  +E  ++ L EE  +          + E     
Sbjct: 121 IQTIHSFCSTVLRRFPLEANVSPQFAEMEERAAELLREELIEDM-------ASGEDATLI 173

Query: 193 YEILEISNDEDIETLISDIISNRTAL 218
             +  I+   D+  L  +I+  R AL
Sbjct: 174 MNLATITGAYDLTELSGEIVGQRIAL 199


>gi|163745129|ref|ZP_02152489.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161381947|gb|EDQ06356.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 1123

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 8/202 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
                 Q+ A+ P  S W++ANAGSGKT +L  RV RLLL +  P  +LCLT+TKAAA+E
Sbjct: 6   DDATRAQIEAARPDASTWLTANAGSGKTRVLTDRVARLLLDDVEPQHILCLTYTKAAASE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTI 136
           M +R+ + +  W+ L D+ L + +  +  + +     +  AR L    +ETPGGLK+QTI
Sbjct: 66  MQNRLFKRLGEWAMLKDDALRSALADLGVQGELTPEQLRNARTLFARAIETPGGLKIQTI 125

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC A++++FPLEA ++  F   ++  +  L  E               E      +I 
Sbjct: 126 HSFCAALLRRFPLEAQVSPQFTEIEDRAADLLRAEIVDEM-------AEGEDAPLVADIA 178

Query: 197 EISNDEDIETLISDIISNRTAL 218
                ED  +L   I+  R A 
Sbjct: 179 RHYTGEDFASLTRSIVGQRDAF 200


>gi|254294694|ref|YP_003060717.1| double-strand break repair helicase AddA [Hirschia baltica ATCC
           49814]
 gi|254043225|gb|ACT60020.1| double-strand break repair helicase AddA [Hirschia baltica ATCC
           49814]
          Length = 1198

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  A+ PT SAWVSANAGSGKT +L+ RV RLLL    P  ++C+T+TKAAA+EM  R+ 
Sbjct: 17  QFDAATPTHSAWVSANAGSGKTKVLIDRVARLLLNGVQPDAIMCVTYTKAAASEMQGRLF 76

Query: 84  EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           + +  W    D+ L+ E+ ++Q +      + ++ KAR L    LETPGGL+++TIHAFC
Sbjct: 77  KRLGGWCVADDKALAKELAELQARDIREYTQEELGKARELFALALETPGGLRIETIHAFC 136

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             ++++FPLEAN+   F   D+  + +L E A          ++  +  +
Sbjct: 137 GRLLRRFPLEANVAPGFKELDDNDASRLWEIAMAKLAEEAAFEDPSKSDE 186


>gi|84514936|ref|ZP_01002299.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella
           vestfoldensis SKA53]
 gi|84511095|gb|EAQ07549.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella
           vestfoldensis SKA53]
          Length = 1113

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 114/201 (56%), Gaps = 8/201 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q+ A++P  S W++ANAGSGKT +L  RV RLLL +  P  +LCLT+TKAAAAEM 
Sbjct: 6   ATQRQVDAANPQISTWLAANAGSGKTRVLTDRVARLLLEDVSPQNILCLTYTKAAAAEMQ 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           +R+ + + AW+ + D+ L A++  +   +  +   +  AR L    +ETPGGLK+QTIH+
Sbjct: 66  NRLFKRLGAWAMMQDDSLRADLRGLGVDRSIDADQLRAARTLFARAIETPGGLKIQTIHS 125

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  ++++FPLEA ++  F   ++  ++ L  +     +         +     +++L  
Sbjct: 126 FCAGVLRRFPLEAGVSPQFREMEDRAAQLLRADVMDQLVQ-------GDASGVVHKMLHH 178

Query: 199 SNDEDIETLISDIISNRTALK 219
            + + +  L +++  ++ A  
Sbjct: 179 FSGDSLAKLTAEVARHKDAFP 199


>gi|170749778|ref|YP_001756038.1| double-strand break repair helicase AddA [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656300|gb|ACB25355.1| double-strand break repair helicase AddA [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1165

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 75/185 (40%), Positives = 114/185 (61%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T++ Q  A+DP  SAWVSANAG+GKT +L  RV+RLLL  A P  +LCLT TKAAAA M+
Sbjct: 18  TRANQRRAADPRASAWVSANAGAGKTKVLTDRVVRLLLDEAPPGRILCLTFTKAAAANMA 77

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV  ++  W  L DE L+AE+ ++ G++     +  AR L    +ETPGGLK++T+HA 
Sbjct: 78  IRVFRLLGRWVTLDDETLAAELAELTGERAGPERLRLARRLFARAVETPGGLKIETLHAL 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++  FP EAN+ + F + DE ++++L +    + LA  + + +  L  A   +   +
Sbjct: 138 CERLLHMFPFEANVPARFVVLDEAKARELFDIEMANVLADAVANGDTPLSAALARVTPEA 197

Query: 200 NDEDI 204
             + +
Sbjct: 198 TGDTL 202


>gi|119385518|ref|YP_916574.1| UvrD-like DNA helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119375285|gb|ABL70878.1| UvrD-like DNA helicase, C-terminal domain [Paracoccus denitrificans
           PD1222]
          Length = 1124

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 121/208 (58%), Gaps = 15/208 (7%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++ +    Q+ A+DP RS W++ANAGSGKT +L  RV RLLLA   P  +LCLT+TKAAA
Sbjct: 1   MMDEATLAQVRAADPHRSTWLTANAGSGKTRVLTDRVARLLLAGTAPERILCLTYTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM +R+L  +  W+ L +  L AE+ ++   +    D+  AR L    +ETPGGLKVQT
Sbjct: 61  SEMQNRLLARLGRWAMLPEAELRAELARLG--EAGAPDLPAARRLFARAIETPGGLKVQT 118

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  ++++FP+EA +   F   D+  +  +  E     +  +  D+  EL+     +
Sbjct: 119 IHSFCAGVLRRFPIEAGVPHGFTELDDRSAALIRAE----IIEEMARDHAPELQD----L 170

Query: 196 LEISNDEDIETLIS-----DIISNRTAL 218
           L + + E ++  ++     +  ++R AL
Sbjct: 171 LALHSGERLDAFLAGLRGFEAPADRDAL 198


>gi|326389380|ref|ZP_08210948.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200]
 gi|325994743|gb|EGD53167.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200]
          Length = 1230

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 33/226 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +QL  +    +  V+A AGSGKT +LV+R+++L+  + +P     LL +T T AAA
Sbjct: 5   WTYEQQLAINTRGSNLLVAAGAGSGKTAVLVERIIKLVTDDKNPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ E + +                  + P    +S    LL   +       + T
Sbjct: 65  SEMRERIAEALIS---------------KLDQNPEDRRLSNQLTLLNKAI-------ITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++      ++  +F I D+ ++  L  EA +     +    + E    F  +
Sbjct: 103 IHSFCLEVVRNNFFLIDLDPNFRIGDDTETLLLKLEAVEELFEELYQKEDNE---DFLTL 159

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  + DI+     LKL  F  S  W  K +   L S 
Sbjct: 160 VESYGGTKDDKPLVDIL-----LKLYDFVKSLPWPEKWLRDVLLSF 200


>gi|170738831|ref|YP_001767486.1| double-strand break repair helicase AddA [Methylobacterium sp.
           4-46]
 gi|168193105|gb|ACA15052.1| double-strand break repair helicase AddA [Methylobacterium sp.
           4-46]
          Length = 1157

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/219 (37%), Positives = 129/219 (58%), Gaps = 3/219 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T++ Q  A+DP  SAWVSANAG+GKT +L  RV+RLLL  A P+ +LCLT TKAAAA M+
Sbjct: 12  TQTAQRRAADPRASAWVSANAGAGKTKVLTDRVVRLLLHGAPPAKILCLTFTKAAAANMA 71

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV E +  W  L +E L AE+T ++G++P+ + + +AR L    +ETPGGLK++T+HA 
Sbjct: 72  IRVFERLGRWVTLPEEALRAELTALEGERPDPATLRRARRLFARAVETPGGLKIETLHAL 131

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++   P EAN+ + F + DE Q+++ ++    + LA  +     +L +A   +   +
Sbjct: 132 CERLLHLVPFEANVPARFVVLDEAQTREAVDRTIDNVLADAVDGTRPDLAQALARVAPEA 191

Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
             E +   I + +  R  L           R + + ++L
Sbjct: 192 AGEALRRAIGEAVRARAVL---LHPQGLPARLERLREAL 227


>gi|299133347|ref|ZP_07026542.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2]
 gi|298593484|gb|EFI53684.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2]
          Length = 1163

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 1/198 (0%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  QL AS P  SA+V+ANAGSGKT++LV RV+RLLL +  P  +LC+T TKAAAA M+ 
Sbjct: 13  REAQLRASHPQSSAFVAANAGSGKTYVLVNRVIRLLLDDVAPEKILCITFTKAAAANMAQ 72

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV + +  W  LSD+ L A I    G +  +   ++AR L    LETPGGLKVQTIHA C
Sbjct: 73  RVFDTLGKWVALSDDELDAAIRN-SGAQVTRDVRARARKLFACALETPGGLKVQTIHALC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             ++QQFP EAN+ +HFA+ DE     ++E A  + L       +  L +A    +  + 
Sbjct: 132 TRLLQQFPFEANVPAHFAVLDERDQTDMMERANLAVLLEAARTPDGALGRALAFAMAQAA 191

Query: 201 DEDIETLISDIISNRTAL 218
           D   + ++ +   +R   
Sbjct: 192 DITFKEVVHEACLSREHF 209


>gi|197103666|ref|YP_002129043.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1]
 gi|196477086|gb|ACG76614.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1]
          Length = 1147

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 123/202 (60%), Gaps = 4/202 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DP RSA+V+ANAGSGKT  L+ RV RLLLA A P T+LC+T+TKAAAAEM  R+ 
Sbjct: 11  QRIAADPGRSAFVTANAGSGKTKTLIDRVARLLLARAEPETILCVTYTKAAAAEMQRRLF 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           + +  WS + D  L+ E+  ++G+     D   +S+AR L    LETPGGLK+QTIHAFC
Sbjct: 71  KRLGDWSVMPDGPLTEELAHLEGRPAAAYDDLRLSEARALFARALETPGGLKIQTIHAFC 130

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           E ++++FPLEA I+  F + D+  +   I  A ++ +A   L     + +A+  +    +
Sbjct: 131 EKLLRRFPLEAGISPGFRVMDDAAAAA-IAAAARAGVARHALKGEGRVAEAYARLSVALD 189

Query: 201 DEDIETLISDIISNRTALKLIF 222
               + +  D  + R  L+  F
Sbjct: 190 FGSFQQMFLDFEARRGRLRDFF 211


>gi|99082686|ref|YP_614840.1| UvrD/REP helicase [Ruegeria sp. TM1040]
 gi|99038966|gb|ABF65578.1| ATP-dependent nuclease subunit A [Ruegeria sp. TM1040]
          Length = 1121

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 110/202 (54%), Gaps = 8/202 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 4   NAASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVEPQHILCLTYTKAAASE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTI 136
           M +R+ + +  W+ L D  L A +  +  +     D +++AR L    +ETPGGLK+QTI
Sbjct: 64  MQNRLFQRLGEWAMLPDAKLRAALVDLGAEDAAIGDGLAQARTLFARAIETPGGLKIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++++FPLEA ++  F   ++  +  L  E  +         +   ++ A + I 
Sbjct: 124 HSFCSSLLRRFPLEAGVSPQFTEMEDRAAAMLRAEIAEDM---AQGPDAHVVEAASFHI- 179

Query: 197 EISNDEDIETLISDIISNRTAL 218
                 D ETL ++I   +   
Sbjct: 180 ---GGLDFETLTAEICRRQAGF 198


>gi|225375922|ref|ZP_03753143.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM
           16841]
 gi|225212243|gb|EEG94597.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM
           16841]
          Length = 1182

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 34/226 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +S T  +Q +     R+  VSA AGSGKT +LV+R+++++    HP     LL +T T 
Sbjct: 2   GVSWTTEQQQVIDLRNRNILVSAAAGSGKTAVLVERIVKIITDKNHPVDIDHLLIVTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+                  I K   ++P    + +   L+          +
Sbjct: 62  AAAAEMRERI---------------GNAIEKALDEQPGNEHLLRQLTLIHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  +++    E ++  +F I DE + K L E      L  ++  N EE  +AF
Sbjct: 100 ITTIDSFCLYVVRNHFHEIDLEPNFRIGDEGELKLLRE----DVLGRVLEQNYEEPSEAF 155

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            + +E       +  ++++I     L+L  F  SY W  K ++  +
Sbjct: 156 SDFVEGYASGRTDAALNEMI-----LQLYEFSRSYPWPEKWLDSFV 196


>gi|163797153|ref|ZP_02191108.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199]
 gi|159177669|gb|EDP62222.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199]
          Length = 1152

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/202 (40%), Positives = 125/202 (61%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++     Q LA+DPT S WV+A+AGSGKT +L  R+L LLL  A P  LLCLT+TKAAAA
Sbjct: 7   LAAANERQRLAADPTASVWVAASAGSGKTKVLTDRLLNLLLDGASPERLLCLTYTKAAAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM+ R+   + AW+ + +  L  ++ ++ G  P ++ ++KAR L   +L+ PGGLK+QTI
Sbjct: 67  EMATRLQSRLAAWTVVDEPSLVDDLARLSGATPTQARLAKARRLFAEVLDAPGGLKIQTI 126

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAF ++++ +FPLEA +  +F +AD+  S  L+ EA+ + LA      + +L  A   + 
Sbjct: 127 HAFAQSLLGRFPLEAGVPPNFRLADDRASAALLAEAEAAMLARARSATDTDLATALSIVT 186

Query: 197 EISNDEDIETLISDIISNRTAL 218
           E +N E    L+   +  RT L
Sbjct: 187 ERANQEQFRELMRAALGARTRL 208


>gi|154247228|ref|YP_001418186.1| double-strand break repair helicase AddA [Xanthobacter
           autotrophicus Py2]
 gi|154161313|gb|ABS68529.1| Double-strand break repair helicase AddA [Xanthobacter
           autotrophicus Py2]
          Length = 1167

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 120/207 (57%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D  S+    Q  AS P  SAWVSANAGSGKTH+L +RV+RLLLA   P  +LCLT+TKAA
Sbjct: 16  DPKSEATRRQSEASHPAFSAWVSANAGSGKTHVLARRVIRLLLAGTPPGRILCLTYTKAA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AA M++RVL I+  W  L D  L   I    G  P+ +  ++AR L    LETPGGLK+Q
Sbjct: 76  AANMANRVLAILGRWVRLPDAELDDAIRDTVGSPPDAALRARARRLFAAALETPGGLKIQ 135

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFC A++ +FP EA++ + F   DE   ++L+   +   + +     N  L +A   
Sbjct: 136 TIHAFCGALLHRFPFEADVAAGFGELDEVGRQELMARIRADLVVAASRTPNALLGEALAR 195

Query: 195 ILEISNDEDIETLISDIISNRTALKLI 221
           + E  +D  +  L+   ++ R  +  +
Sbjct: 196 LTEDMSDSGLSGLLEAAVALRARILPL 222


>gi|221236588|ref|YP_002519025.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000]
 gi|220965761|gb|ACL97117.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000]
          Length = 1153

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 85/218 (38%), Positives = 126/218 (57%), Gaps = 11/218 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DPT SA+V+ANAGSGKT  L+ RV RLLLA   P  +LC+T+TKAAAAEM  R+ 
Sbjct: 5   QRIAADPTISAFVTANAGSGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLF 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           + +  WS  SD  L AE+ K+ G+   + D   +S AR L    LETPGGLK+QTIHAFC
Sbjct: 65  DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 124

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           E ++++FPLEA ++  F + D+ Q+   I  A +  +A+ +  +++   +A+       +
Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDD-QAGAAIARAARRAVAAWVDSHDDAFSEAYARFSVALD 183

Query: 201 DEDIETLISDIISNRTALKLI-------FFFFSYLWRR 231
            +  E + +   + R  +              S  WRR
Sbjct: 184 FQSFEAMFAGFEARRGQIMTYVQRCGGLAGAVSDAWRR 221


>gi|167038394|ref|YP_001665972.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116798|ref|YP_004186957.1| recombination helicase AddA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|251764573|sp|B0KDB7|ADDA_THEP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|166857228|gb|ABY95636.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929889|gb|ADV80574.1| recombination helicase AddA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 1233

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 31/223 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++   +    +  V+A AGSGKT +LV+R++ L+    +P     LL +T T AAA
Sbjct: 5   WTEEQKQAITTRGSNLLVAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ E + A               I  + P    ++    LL           + T
Sbjct: 65  SEMRERIAEALIA---------------ILDQNPEDKRLANQLTLL-------NKATITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++      ++  +F I D+ ++  L  EA +     +    +++ K+ F  +
Sbjct: 103 IHSFCLEVVRNNFFLLDLDPNFRIGDDTETLLLQLEASEELFEEMYAKEDKD-KEGFLTL 161

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +E       +  + DI+     L+L  F  S  W  K ++  +
Sbjct: 162 VESYGGTKDDQDLQDIL-----LRLYGFVRSLPWPEKWLKDVI 199


>gi|167038872|ref|YP_001661857.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514]
 gi|300913540|ref|ZP_07130857.1| recombination helicase AddA [Thermoanaerobacter sp. X561]
 gi|307723445|ref|YP_003903196.1| recombination helicase AddA [Thermoanaerobacter sp. X513]
 gi|251764574|sp|B0K213|ADDA_THEPX RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|166853112|gb|ABY91521.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514]
 gi|300890225|gb|EFK85370.1| recombination helicase AddA [Thermoanaerobacter sp. X561]
 gi|307580506|gb|ADN53905.1| recombination helicase AddA [Thermoanaerobacter sp. X513]
          Length = 1233

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 31/223 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++   +    +  V+A AGSGKT +LV+R++ L+    +P     LL +T T AAA
Sbjct: 5   WTEEQKQAITTRGSNLLVAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ E + A               I  + P    ++    LL           + T
Sbjct: 65  SEMRERIAEALIA---------------ILDQNPEDKRLANQLTLL-------NKATITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++      ++  +F I D+ ++  L  EA +     +    +++ K+ F  +
Sbjct: 103 IHSFCLEVVRNNFFLLDLDPNFRIGDDTETLLLQLEASEELFEEMYAKEDKD-KEGFLTL 161

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +E       +  + DI+     L+L  F  S  W  K ++  +
Sbjct: 162 VESYGGTKDDQDLQDIL-----LRLYGFVRSLPWPEKWLKDVI 199


>gi|259418122|ref|ZP_05742041.1| double-strand break repair helicase AddA [Silicibacter sp.
           TrichCH4B]
 gi|259347028|gb|EEW58842.1| double-strand break repair helicase AddA [Silicibacter sp.
           TrichCH4B]
          Length = 1121

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 8/202 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     Q  A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+E
Sbjct: 4   NAASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVEPQHILCLTYTKAAASE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTI 136
           M +R+ + +  W+ L D  L A +  +  +  +  D +++AR L    +ETPGGLK+QTI
Sbjct: 64  MQNRLFQRLGEWAMLPDAKLRAALVDLGAEDASVGDGLAQARTLFARAIETPGGLKIQTI 123

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++++FPLEA ++  F+  ++  +  L  E  +         +   ++ A + I 
Sbjct: 124 HSFCSSLLRRFPLEAGVSPQFSEMEDRAAAMLRAEITEDM---AQGSDARVVEAASFHI- 179

Query: 197 EISNDEDIETLISDIISNRTAL 218
                 D E+L ++I   +   
Sbjct: 180 ---GGLDFESLTAEICRRQAGF 198


>gi|125974531|ref|YP_001038441.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium
           thermocellum ATCC 27405]
 gi|251764521|sp|A3DH19|ADDA_CLOTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|125714756|gb|ABN53248.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium
           thermocellum ATCC 27405]
          Length = 1251

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +    +   +S  VSA AG+GKT +LV+R++R +    +P     LL +T T AAA
Sbjct: 7   WTDEQWEAITGNEKSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+               +   + P  +++ +   LL       G   + T
Sbjct: 67  TEMRERIAQAIS---------------EKLEENPGSANIQRQLTLL-------GKACITT 104

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++    + NI   F IADE +S+ +  EA          + NE+    F+E+
Sbjct: 105 IHSFCLEVIRSNFQQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFEL 160

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           LE       +  + D++     L L  F  S  W  + +EK   S+
Sbjct: 161 LECYGGNRDDRALQDMV-----LNLYDFIQSSPWPEEWLEKMTESM 201


>gi|295687598|ref|YP_003591291.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC
           21756]
 gi|295429501|gb|ADG08673.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC
           21756]
          Length = 1153

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 123/198 (62%), Gaps = 4/198 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DP  SA+V+ANAGSGKT  L+ RV RLLLA   P  +LC+T+TKAAAAEM  R+ 
Sbjct: 5   QRIAADPAISAFVTANAGSGKTKTLIDRVARLLLAKVPPEAILCVTYTKAAAAEMQRRLF 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           E +  WS  SD  L AE+ K+ G+  +  D   +S+AR L    LETPGGLK+QTIHAFC
Sbjct: 65  ERLGKWSVTSDADLRAELAKLVGESDDIYDARRLSEARALFAQALETPGGLKIQTIHAFC 124

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           E ++++FPLEA ++  F + D+ Q+   I  A + ++A+ +  +++   +A+       +
Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDD-QAGAAIARAARRSVAAWVDTHDDAFAEAYARFSVALD 183

Query: 201 DEDIETLISDIISNRTAL 218
            +  E + +   + R  +
Sbjct: 184 FQSFEAMFAGFEARRGQI 201


>gi|110677844|ref|YP_680851.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh
           114]
 gi|109453960|gb|ABG30165.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh
           114]
          Length = 1125

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 107/202 (52%), Gaps = 8/202 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                Q+ A+ P  S W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA+EM
Sbjct: 6   PATQAQVDAARPDASTWLAANAGSGKTRVLTDRVARLLLDKVAPEHILCLTYTKAAASEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIH 137
            +R+ + +  W+ L D+ L+  +  +  +   +   + KAR L    +ETPGGLK+QTIH
Sbjct: 66  QNRLFKRLGEWAMLQDDALAEALRDLGVETAVDAEKLRKARTLFARAIETPGGLKIQTIH 125

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC +++++FPLEA ++  F   +E  +  L  E   +                  ++ +
Sbjct: 126 SFCASLLRRFPLEARVSPQFTEIEERAADLLRAEIIDTM-------AEGPDAAVIADLAQ 178

Query: 198 ISNDEDIETLISDIISNRTALK 219
               E+   L   ++ ++   +
Sbjct: 179 HYTGENFVKLAKAVVQHKDGFR 200


>gi|256005816|ref|ZP_05430767.1| recombination helicase AddA [Clostridium thermocellum DSM 2360]
 gi|255990217|gb|EEU00348.1| recombination helicase AddA [Clostridium thermocellum DSM 2360]
 gi|316941647|gb|ADU75681.1| recombination helicase AddA [Clostridium thermocellum DSM 1313]
          Length = 1251

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +    +   +S  VSA AG+GKT +LV+R++R +    +P     LL +T T AAA
Sbjct: 7   WTDEQWEAITGNEKSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+               +   + P  +++ +   LL       G   + T
Sbjct: 67  TEMRERIAQAIS---------------EKLEENPGSANIQRQLTLL-------GKACITT 104

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++    + NI   F IADE +S+ +  EA          + NE+    F+E+
Sbjct: 105 IHSFCLEVIRSNFQQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFEL 160

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           LE       +  + D++     L L  F  S  W  + +EK   S+
Sbjct: 161 LECYGGNRDDRALQDMV-----LNLYDFIQSSPWPEEWLEKMTESM 201


>gi|281419055|ref|ZP_06250072.1| recombination helicase AddA [Clostridium thermocellum JW20]
 gi|281407204|gb|EFB37465.1| recombination helicase AddA [Clostridium thermocellum JW20]
          Length = 1251

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +    +   +S  VSA AG+GKT +LV+R++R +    +P     LL +T T AAA
Sbjct: 7   WTDEQWEAITGNEKSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+               +   + P  +++ +   LL       G   + T
Sbjct: 67  TEMRERIAQAIS---------------EKLEENPGSANIQRQLTLL-------GKACITT 104

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++    + NI   F IADE +S+ +  EA          + NE+    F+E+
Sbjct: 105 IHSFCLEVIRSNFQQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFEL 160

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           LE       +  + D++     L L  F  S  W  + +EK   S+
Sbjct: 161 LECYGGNRDDRALQDMV-----LNLYDFIQSSPWPEEWLEKMTESM 201


>gi|16127768|ref|NP_422332.1| UvrD/Rep family helicase [Caulobacter crescentus CB15]
 gi|13425272|gb|AAK25500.1| helicase, UvrD/Rep family [Caulobacter crescentus CB15]
          Length = 1203

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/218 (38%), Positives = 126/218 (57%), Gaps = 11/218 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q +A+DPT SA+V+ANAG+GKT  L+ RV RLLLA   P  +LC+T+TKAAAAEM  R+ 
Sbjct: 55  QRIAADPTISAFVTANAGAGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLF 114

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140
           + +  WS  SD  L AE+ K+ G+   + D   +S AR L    LETPGGLK+QTIHAFC
Sbjct: 115 DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 174

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           E ++++FPLEA ++  F + D+ Q+   I  A +  +A+ +  +++   +A+       +
Sbjct: 175 EKLLRRFPLEAGVSPGFTVMDD-QAGAAIARAARRAVAAWVDSHDDAFSEAYARFSVALD 233

Query: 201 DEDIETLISDIISNRTALKLI-------FFFFSYLWRR 231
            +  E + +   + R  +              S  WRR
Sbjct: 234 FQSFEAMFAGFEARRGQIMTYVQRCGGLAGAVSDAWRR 271


>gi|84501212|ref|ZP_00999417.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
           batsensis HTCC2597]
 gi|84390503|gb|EAQ02991.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
           batsensis HTCC2597]
          Length = 1117

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 11/207 (5%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q+ A+ P RS W++ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA EM 
Sbjct: 6   ASQRQVDAARPDRSTWLAANAGSGKTRVLTDRVARLLLDGVLPQHILCLTYTKAAATEMQ 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           +R+ + +  W+ L D+ L  E+  +  + +     ++ AR L    +ETPGGLK+QTIH+
Sbjct: 66  NRLFKRLGHWAMLPDDQLRTELETLGIEDRVTAGRLNLARTLFARAIETPGGLKIQTIHS 125

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC A++++FPLEA ++  F   +E  +  L  E     +  +    +  + +        
Sbjct: 126 FCAALLRRFPLEAGVSPQFTEMEERDATLLRAE----VIDRLARRPDAGVLERVALFYSG 181

Query: 199 SNDEDIETLI---SDIISN---RTALK 219
           ++ E +   +   +D++S    R AL+
Sbjct: 182 ASMEGLAATVAGHADLLSRQPGRDALE 208


>gi|189182928|ref|YP_001936713.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179699|dbj|BAG39479.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi
           str. Ikeda]
          Length = 1155

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 119/202 (58%), Gaps = 6/202 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           QL+ASDP  S WVSA+AG+GKT +L  RVLRLLL+ A    +LCLT T AAA EM  RV+
Sbjct: 5   QLIASDPYVSCWVSASAGTGKTKVLTDRVLRLLLSGAKLQKILCLTFTNAAANEMLDRVI 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             + +W+ + + +L A +  + G  P  S + +AR L    L+    + +QTIH+FC+ +
Sbjct: 65  AQLKSWACMDNAMLVASMHNMLGINPTDSQVLRARSLCNEYLQAKENIAIQTIHSFCQNL 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +Q+F +EA I ++F I DE ++K++I       +   ++ ++ E+  +   I    ++  
Sbjct: 125 LQKFSVEAGINANFTILDELKTKEIIY-----FIQQNLIHSSSEIHGSLEFIANYKHETS 179

Query: 204 IETLISDIIS-NRTALKLIFFF 224
           I  LI +II+  R  L L+  +
Sbjct: 180 ITQLIDNIIADQRKFLSLLEHY 201


>gi|209883635|ref|YP_002287492.1| double-strand break repair helicase AddA [Oligotropha
           carboxidovorans OM5]
 gi|209871831|gb|ACI91627.1| double-strand break repair helicase AddA [Oligotropha
           carboxidovorans OM5]
          Length = 1161

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 83/198 (41%), Positives = 116/198 (58%), Gaps = 1/198 (0%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  Q  AS+P  SA+V+ANAGSGKTH+LV RV+RLLLA+  P  +LC+T TKAAAA M+ 
Sbjct: 13  RDAQARASNPEASAFVAANAGSGKTHVLVTRVIRLLLADVAPEKILCITFTKAAAANMAQ 72

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV E +  W  L D+ L A I  + G    +    +AR L    LETPGGLKVQTIHA C
Sbjct: 73  RVFETLGRWVALDDDALDAAIRHV-GAPATREMRVRARKLFACALETPGGLKVQTIHALC 131

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             ++QQFP EAN+ +HFA+ DE    +++E A  + L       +  L +A    +  + 
Sbjct: 132 TRLLQQFPFEANVPAHFAVLDERDQTEMMERANLAVLLEAARAPDSALGRALAFAMTQAA 191

Query: 201 DEDIETLISDIISNRTAL 218
           D   + ++ +   +R   
Sbjct: 192 DVTFKEVVHEACLSREHF 209


>gi|325261823|ref|ZP_08128561.1| ATP-dependent nuclease subunit A [Clostridium sp. D5]
 gi|324033277|gb|EGB94554.1| ATP-dependent nuclease subunit A [Clostridium sp. D5]
          Length = 1263

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 34/223 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T  +Q +     R+  VSA AGSGKT +LV+R++++L     P     LL +T T+A
Sbjct: 3   VKWTSEQQKVIDLRERNILVSAAAGSGKTAVLVERIIQMLTDPKKPADVDRLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ E                I K   ++P    + +   L+ +        ++
Sbjct: 63  AAAEMKERIRE---------------AIEKSLEERPEDVHLQRQATLIHSA-------QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC +++++     +I   F IA+E + K L ++     L +  ++ +    +   
Sbjct: 101 TTIHSFCLSVIREHFHVLDIDPGFRIAEEGELKLLKQDVLDELLEACYVNADTPFLEFVE 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +     ND+ IE +I         LKL  +  SY      +++
Sbjct: 161 KFGTGRNDKKIEEII---------LKLYEYSRSYPQPDVWLDE 194


>gi|291535312|emb|CBL08424.1| recombination helicase AddA, Firmicutes type [Roseburia
           intestinalis M50/1]
          Length = 1237

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 34/230 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            ++ T  ++ +     R+  VSA AGSGKT +LV+R+++++    HP     LL +T T 
Sbjct: 2   GMTWTDDQRKVIELRDRNILVSAAAGSGKTAVLVERIIKIITDKEHPVDIDRLLIVTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+   +                    + P+   + +   LL          +
Sbjct: 62  AAAAEMRERIGNAL---------------ENALKENPDDEHLQRQLSLLHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  +++    E ++  +F I DE + K L E      LA ++L N EE    F
Sbjct: 100 ITTIDSFCLYVIRNHFHEIDLEPNFRIGDEGELKLLKE----DVLAKVLLKNYEESAPEF 155

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              ++       +  +S +I     L+L  F  SY W +K +  +  S  
Sbjct: 156 LAFVDGYASGRNDAALSGMI-----LQLYEFSRSYPWPKKWLPAAAESYG 200


>gi|148284261|ref|YP_001248351.1| ATP-dependent DNA helicase UvrD [Orientia tsutsugamushi str.
           Boryong]
 gi|146739700|emb|CAM79510.1| ATP-dependent helicase, UvrD/rep/AddA family [Orientia
           tsutsugamushi str. Boryong]
          Length = 1154

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 119/202 (58%), Gaps = 6/202 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           QL+ASDP  S WVSA+AG+GKT +L  RVLRLLL+ A    +LCLT T AAA EM  RV+
Sbjct: 5   QLIASDPYVSCWVSASAGTGKTKVLTDRVLRLLLSGAKLQKILCLTFTNAAANEMLDRVI 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             + +W+ + + +L A +  + G  P  S + +AR L    L+    + +QTIH+FC+ +
Sbjct: 65  AQLKSWACMDNAMLVASMHNMLGINPTDSQVLRARSLCNEYLQAKENIAIQTIHSFCQNL 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +Q+F +EA I ++F I DE ++K++I       +   ++ ++ E+  +   I    ++  
Sbjct: 125 LQKFSVEAGINANFTILDELKTKEIIY-----FIQQNLIHSSSEIHVSLEFIANYKHENS 179

Query: 204 IETLISDIIS-NRTALKLIFFF 224
           I  LI +II+  R  L L+  +
Sbjct: 180 ITQLIDNIIADQRKFLSLLEHY 201


>gi|58039096|ref|YP_191060.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H]
 gi|58001510|gb|AAW60404.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H]
          Length = 1191

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 112/179 (62%), Gaps = 15/179 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL--------------LLANA 60
           ++I+     Q  ASDP  S +VSA+AGSGKT +L+ R+LRL              L   A
Sbjct: 15  EVIAAADRTQRQASDPRASVFVSASAGSGKTKLLIDRLLRLMLPLYVQTDDGDTILADGA 74

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           HPS +LCLT+TKAAAAEM++R+ + + +W  L D  L AE+  +     +++   +AR L
Sbjct: 75  HPSRILCLTYTKAAAAEMANRLQQKLGSWVSLPDAKLGAELESLDVPNTDET-RRRARAL 133

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            + +L+ PGGL+++TIHAFC++++++FPLEA++  HF + ++  +   + EA +  LA 
Sbjct: 134 FLCVLDLPGGLRIETIHAFCQSLLRRFPLEASVDPHFTLMEDTDTTLALREAMEDGLAR 192


>gi|296117285|ref|ZP_06835876.1| double-strand break repair helicase AddA [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976178|gb|EFG82965.1| double-strand break repair helicase AddA [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 1208

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 23/221 (10%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL--------------LLANA 60
           D I+     Q  ASDP  S +VSA+AGSGKT +L+ R+LRL              L+  +
Sbjct: 32  DAIALANESQAQASDPQASVFVSASAGSGKTKLLIDRLLRLMLPRPTHDAHGQAVLVPGS 91

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            PS +LCLT TKAAAAEM+ R+   +  W  L D  L  E+  +    P       AR L
Sbjct: 92  DPSRILCLTFTKAAAAEMAIRLQNRLGRWVTLPDAALDTELRDLF-VPPEPRTRQVAREL 150

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
              +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + +E  ++  +  A +  +   
Sbjct: 151 FARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEETDARLALRGAVEDVVGR- 209

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLI 221
                     A   +       D  TL++ +     A + +
Sbjct: 210 -------GGPAIAALAGQVGIGDFTTLVTRLQGQLRAFRAV 243


>gi|294084828|ref|YP_003551588.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664403|gb|ADE39504.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 1162

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 123/207 (59%), Gaps = 4/207 (1%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           DLI +   EQ  ASDP  S +VSANAG+GKT +L  RVLRLLL+ A    +LC+T+T+AA
Sbjct: 3   DLIQRASIEQARASDPMASVFVSANAGTGKTKLLTDRVLRLLLSGAEADGILCVTYTRAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM +R+   +  W+ +S   L+ ++  +    P++ ++  AR L   IL+   G +V+
Sbjct: 63  AAEMRNRIYARLARWAVISTADLTKDLQAMGIVAPSQGNIRLARMLFAKILDNDNGPRVE 122

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC++I+++FP+EA I  +  +AD+ +  +L   AK + + S+    +  ++ A   
Sbjct: 123 TVHSFCQSILRRFPIEAGIAPNAKLADDAEQDRLKSIAKVAVMNSL----DPAIQIAVAT 178

Query: 195 ILEISNDEDIETLISDIISNRTALKLI 221
           I   S++     ++++ +    AL  I
Sbjct: 179 IANQSSEGQATEILTEFLRRVPALDDI 205


>gi|291538110|emb|CBL11221.1| recombination helicase AddA, Firmicutes type [Roseburia
           intestinalis XB6B4]
          Length = 1237

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 34/230 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            ++ T  ++ +     R+  VSA AGSGKT +LV+R+++++    HP     LL +T T 
Sbjct: 2   GMTWTDDQRKVIELRDRNILVSAAAGSGKTAVLVERIIKIITDKDHPVDIDRLLIVTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+   +                    ++P+   + +   LL          +
Sbjct: 62  AAAAEMRERIGNAL---------------ENALKEQPDDEHLQRQLSLLHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  +++    E ++  +F I DE + K L E      LA ++L N EE    F
Sbjct: 100 ITTIDSFCLYVIRNHFHEIDLEPNFRIGDEGELKLLKE----DVLAKVLLKNYEESAPEF 155

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              ++       +  +S +I     L+L  F  SY W +K +  +  S  
Sbjct: 156 LAFVDGYASGRNDAALSGMI-----LQLYEFSRSYPWPKKWLPAAAESYG 200


>gi|157803400|ref|YP_001491949.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel]
 gi|157784663|gb|ABV73164.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel]
          Length = 872

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT +L  R LRLL+    P+ +LCLT T AAA EM  R+ 
Sbjct: 5   QQEASDPKYSVWVSASAGTGKTKVLTDRFLRLLIKGVEPANILCLTFTNAAAVEMQARIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L  E+  + G KP + ++  A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SKLKYLSLCNAEKLEEELFLMLGNKPLQPELENAKTLYDKILNSNEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PLEA IT  F I +E + + +    +       + D + +L K    +L   ++  
Sbjct: 125 LKTCPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + S+II  +   K +F   +  
Sbjct: 179 LQDIFSEIIEQKIKFKKLFTHKTIP 203


>gi|240144976|ref|ZP_04743577.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82]
 gi|257202969|gb|EEV01254.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82]
          Length = 1237

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 34/230 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            ++ T  ++ +     R+  VSA AGSGKT +LV+R+++++    HP     LL +T T 
Sbjct: 2   GMTWTDDQRKVIELRDRNILVSAAAGSGKTAVLVERIIKIITDKEHPVDIDRLLIVTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+   +                    ++P+   + +   LL          +
Sbjct: 62  AAAAEMRERIGNAL---------------ENALKEQPDDEHLQRQLSLLHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  +++    E ++  +F I DE + K L E      LA ++L N EE    F
Sbjct: 100 ITTIDSFCLYVIRNHFHEIDLEPNFRIGDEGELKLLKE----DVLAKVLLKNYEESAPEF 155

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              ++       +  +S +I     L+L  F  SY W +K +  +  S  
Sbjct: 156 LAFVDGYASGRNDAALSGMI-----LQLYEFSRSYPWPKKWLLAAAESYG 200


>gi|148555593|ref|YP_001263175.1| double-strand break repair helicase AddA [Sphingomonas wittichii
           RW1]
 gi|148500783|gb|ABQ69037.1| Double-strand break repair helicase AddA [Sphingomonas wittichii
           RW1]
          Length = 1142

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 98/195 (50%), Gaps = 1/195 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   + +Q  ASDP    W+SA+AG+GKTH+L  RVLRLLL  A P  +LCLT TKA AA
Sbjct: 8   LDPLQPQQRAASDPRELVWLSASAGTGKTHVLTARVLRLLLGGAAPEAILCLTFTKAGAA 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQT 135
           EM+ R+   +  W+   D++   +     G+      + +AR L   +LE P GGL++QT
Sbjct: 68  EMAERIHRRLAHWAGQKDDLKLTQDLTRLGEDAGPEALKRARQLFARVLEAPGGGLRIQT 127

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFC+ ++  FP EA +T  F   +  +   L        L       +  L +    +
Sbjct: 128 IHAFCQTLLAGFPAEAGLTPGFRPIEGREEAALARRTLADLLDGAARGGDHGLIRDVQAL 187

Query: 196 LEISNDEDIETLISD 210
                +   E  + D
Sbjct: 188 SLRLGEGGAEAYLLD 202


>gi|153813842|ref|ZP_01966510.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
 gi|145848238|gb|EDK25156.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
          Length = 1197

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 34/223 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +  TK +Q +     R+  VSA AGSGKT +LV+R+++ +     P     LL +T T+
Sbjct: 2   GVKWTKQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+ E                I K   + P    + +   L+ +         
Sbjct: 62  AAAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSAP------- 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC +++++     ++   F I ++ + K L ++     L        EE     
Sbjct: 100 ITTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFT 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                  ND  IE +I         LKL  +  SY    + ++
Sbjct: 160 ERFGTGKNDRKIEGII---------LKLYEYSGSYPRPEQWLD 193


>gi|331092164|ref|ZP_08340994.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401936|gb|EGG81510.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1197

 Score =  188 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 34/226 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            ++ T  ++ + S   R+  VSA AGSGKT +LV+R++ +L  +  P     LL +T T+
Sbjct: 2   GVNWTPEQEKVISLRNRNILVSAAAGSGKTAVLVERIITMLTKDEPPINVDELLIVTFTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA+EM  R+L                 I K   + P+   + K   L+ + +       
Sbjct: 62  AAASEMKERILS---------------AIEKKLEENPDNVHLQKQSTLIHSAM------- 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC ++++++    ++   F I +E + K L +E  +  L       +++     
Sbjct: 100 ITTIHSFCLSVIREYFHTIDLDPSFRIGEEGELKLLQKEVLQELLEEQYEKADKKFLSFV 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                  +D+ +E  I         L+L  F  SY    K ++  +
Sbjct: 160 ERFATGRDDKKLEEFI---------LQLYTFSGSYPNGEKWLDSCI 196


>gi|220921602|ref|YP_002496903.1| double-strand break repair helicase AddA [Methylobacterium nodulans
           ORS 2060]
 gi|219946208|gb|ACL56600.1| double-strand break repair helicase AddA [Methylobacterium nodulans
           ORS 2060]
          Length = 1157

 Score =  188 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 124/199 (62%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T++ Q  A+DP  SAWVSANAG+GKT +L  RV+RLLL  A PS +LCLT TKAAAA M+
Sbjct: 12  TRTAQRRAADPCASAWVSANAGAGKTKVLTDRVVRLLLHGAAPSKILCLTFTKAAAANMA 71

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV E +  W  L  E L AE+T+++G++P+ + + +AR L    +ETPGGLK++T+HA 
Sbjct: 72  IRVFERLGRWVTLDAEALRAELTELEGERPDAATLRRARRLFARAVETPGGLKIETLHAL 131

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++   P EAN+ + F + DE Q+++ ++    + LA  +   + +L  A   +   +
Sbjct: 132 CERLLHLVPFEANVPARFVVLDEAQTREAVDRTIDNVLADAVDGTHPDLAGALGLVAPEA 191

Query: 200 NDEDIETLISDIISNRTAL 218
             E +   I + +  R+ L
Sbjct: 192 AGETLRRAIGEAVRARSLL 210


>gi|89056557|ref|YP_512008.1| UvrD/REP helicase [Jannaschia sp. CCS1]
 gi|88866106|gb|ABD56983.1| UvrD/REP helicase [Jannaschia sp. CCS1]
          Length = 1120

 Score =  188 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 87/160 (54%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +      Q  A+DP  S W+ ANAGSGKT +L  RV RLLL    P  +LCLT+TKAAA 
Sbjct: 1   MDDATRAQTRAADPATSTWLGANAGSGKTRVLTDRVARLLLDGVPPERILCLTYTKAAAM 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM +R+   +  W+   D  L   +  I         +  AR L    +E PGGLK+QTI
Sbjct: 61  EMQNRLFSRLGTWAMKDDAALRDTLGAIGVGGLTPELLDTARTLFARAIEAPGGLKIQTI 120

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+FC +++++FPLEA ++  F   DE    +L+ +     
Sbjct: 121 HSFCASVLRRFPLEARVSPAFTEIDERVQARLLADLLDDM 160


>gi|317501978|ref|ZP_07960162.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896658|gb|EFV18745.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1197

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 34/223 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +  T+ +Q +     R+  VSA AGSGKT +LV+R+++ +     P     LL +T T+
Sbjct: 2   GVKWTEQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+ E                I K   + P    + +   L+ +         
Sbjct: 62  AAAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSAP------- 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC +++++     ++   F I ++ + K L ++     L        EE     
Sbjct: 100 ITTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFT 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                  ND  IE +I         LKL  +  SY    + ++
Sbjct: 160 ERFGTGKNDRKIEGII---------LKLYEYSGSYPRPEQWLD 193


>gi|331088205|ref|ZP_08337124.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330408449|gb|EGG87915.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1197

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 34/223 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +  T+ +Q +     R+  VSA AGSGKT +LV+R+++ +     P     LL +T T+
Sbjct: 2   GVKWTEQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+ E                I K   + P    + +   L+ +         
Sbjct: 62  AAAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSAP------- 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC +++++     ++   F I ++ + K L ++     L        EE     
Sbjct: 100 ITTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFT 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                  ND  IE +I         LKL  +  SY    + ++
Sbjct: 160 ERFGTGKNDRKIEGII---------LKLYEYSGSYPRPEQWLD 193


>gi|87200013|ref|YP_497270.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135694|gb|ABD26436.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444]
          Length = 1161

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
             K  Q  A  P R+ W+SA+AG+GKT +L  RVLRLLL     P  LLCLT TKA AAE
Sbjct: 6   PLKENQAHAVHPQRTVWLSASAGTGKTQVLSARVLRLLLQDGVEPEQLLCLTFTKAGAAE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTI 136
           M+ RV E++ +W  L +  L+ ++  I G   +   +++AR     +L+ PGG L+++TI
Sbjct: 66  MATRVNEVLASWVRLPEIELAQQLRAI-GAPFDPGTVARARSRFAAVLDCPGGGLRIETI 124

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFC+ ++  FP+EA +       ++     L+ +     L       +EEL  A   + 
Sbjct: 125 HAFCQWLLASFPVEAGLRPGTRAMEDRDRALLVRQVLAEMLVEAGERGDEELLDALATLS 184

Query: 197 EISNDEDIETLISDIISNRTAL 218
              +++ +E  +    S R   
Sbjct: 185 RRMSEDQVEAFLLRCASARDLW 206


>gi|239947179|ref|ZP_04698932.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921455|gb|EER21479.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 847

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+ 
Sbjct: 5   QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQARIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L  E+  + G KP+  +   A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKYLSLCNAEKLEEELFLMSGNKPSPQETENAKTLYDKILNSNEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++ FP+EA+IT  F I +E + + +    +       + D + +L K    +L   ++  
Sbjct: 125 LKTFPVEADITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLIKI---LLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   K +F      
Sbjct: 179 LQDIFTEIIEQKIKFKKLFINTQIP 203


>gi|330991806|ref|ZP_08315755.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp.
           SXCC-1]
 gi|329760827|gb|EGG77322.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp.
           SXCC-1]
          Length = 1194

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 27/242 (11%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--------------NA 60
           D I      Q  ASDP  S +VSA+AGSGKT +LV R+LRL+L                +
Sbjct: 13  DAIGLANRSQAQASDPQASVFVSASAGSGKTKLLVDRLLRLMLPRDVPDRDGVMTRVPGS 72

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P+ +LCLT TKAAAAEMS R+   +  W  L D  L  E+ ++            AR L
Sbjct: 73  DPARILCLTFTKAAAAEMSIRLQNRLGQWVMLPDADLDRELARLS-VPTGVETRRVAREL 131

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
              +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + +E  ++     A +  +   
Sbjct: 132 FARVLDLPGGMRIGTIHAFCQSLLRRFPIEAAISPHFTLIEETDARLAQRAAVEDVV--- 188

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISN-RTALKLIFFFFSYLWRRKIIEKSLW 239
                 +   A   +       +  TLI  + +  R  L +   + +       +E +L 
Sbjct: 189 -----GQGGPAVSTLAAQIGVGEFTTLIGRLQAQSRRILPVARRWQADP---ATVEAALM 240

Query: 240 SI 241
            +
Sbjct: 241 HL 242


>gi|94496379|ref|ZP_01302956.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94424125|gb|EAT09149.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 1144

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 1/196 (0%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +Q  A+ P    W+SA+AG+GKTH+L  RV RLLL    P  +LCLT TKA AAEM+ R+
Sbjct: 17  DQARAAGPDAHVWLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRI 76

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + + AW  +    L+A++  + G+         AR L   +LE+ GGL++QTIH FC+ 
Sbjct: 77  HDRLAAWVQMDGPALAADLMAL-GEDHGPQMQDHARRLFAEVLESTGGLRIQTIHGFCQQ 135

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++  FPLEA +   F   D+ +   L  +     +     + ++ L  A   +     + 
Sbjct: 136 LLTAFPLEAELAPGFRPLDQREQSALARQTLADVVVRAQEEGDDPLMTALQSLSLRLGEG 195

Query: 203 DIETLISDIISNRTAL 218
             E  +    +   AL
Sbjct: 196 GAEAFLMRCAARGEAL 211


>gi|331087018|ref|ZP_08336093.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409468|gb|EGG88911.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1229

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 34/229 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +S TK +  +     R+  VSA AGSGKT +LV+R++  L  +  P     +L +T T+
Sbjct: 2   GVSWTKEQAQVIHLRNRNILVSAAAGSGKTAVLVERIITRLTVDEPPIDVDQMLVVTFTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+ +                I K   ++P    + +   L+          +
Sbjct: 62  AAAAEMKERIRD---------------AIEKKLEEQPENVHLQRQATLIHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V TIH+FC ++++ +    ++   F IADE + K L ++  +  L +      +      
Sbjct: 100 VTTIHSFCLSVIRDYFHMIDLDPGFRIADEGELKLLRQDVLEEVLENCYTAGEQSFLDCI 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                  +D+ IE +I         L+L  F  S     K + + + S 
Sbjct: 160 ESFAAGRDDKKIEEII---------LQLYEFSRSNPEPEKWLRQCVKSY 199


>gi|300023817|ref|YP_003756428.1| double-strand break repair helicase AddA [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525638|gb|ADJ24107.1| double-strand break repair helicase AddA [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 1196

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/203 (43%), Positives = 118/203 (58%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L ++T   Q  A+DP  SAWV ANAG+GKTH+L  RVLRLLLA   P  +LCLT+TKAAA
Sbjct: 13  LRAETDLHQGNAADPLASAWVRANAGTGKTHVLTLRVLRLLLAGTSPEKILCLTYTKAAA 72

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEMS RV + +  W    ++ L  +I K+ G   +   +  AR L    +ETPGGLKVQT
Sbjct: 73  AEMSRRVFDRLAGWVTADEKELEKDIRKVTGGDVSVETLQLARRLFANAIETPGGLKVQT 132

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAF E ++Q+FPLEA +   F I D+  +  L   A + TL     +    L +A   I
Sbjct: 133 IHAFAERLLQRFPLEAGVPPDFKILDDAAAGDLKARAIEQTLLDATSEPETPLGRALDVI 192

Query: 196 LEISNDEDIETLISDIISNRTAL 218
           +  + D   + LIS+ +  R  L
Sbjct: 193 VRYATDTQFDKLISNAVEERRWL 215


>gi|307267168|ref|ZP_07548676.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917819|gb|EFN48085.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 358

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 33/226 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +QL  +    +  V+A AGSGKT +LV+R+++L+  + +P     LL +T T AAA
Sbjct: 5   WTYEQQLAINTRGSNLLVAAGAGSGKTAVLVERIIKLVTDDKNPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ E + +                  + P    +S    LL           + T
Sbjct: 65  SEMRERIAEALIS---------------KLDQNPEDRRLSNQLTLL-------NKATITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++      ++  +F I D+ ++  L  EA +     +    + E    F  +
Sbjct: 103 IHSFCLEVVRNNFFLIDLDPNFRIGDDTETLLLKLEAVEELFEELYQKEDNE---DFLTL 159

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  + DI+     LKL  F  S  W  K +   L S 
Sbjct: 160 VESYGGTKDDKPLVDIL-----LKLYDFVKSLPWPEKWLRDVLLSF 200


>gi|226325452|ref|ZP_03800970.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758]
 gi|225206195|gb|EEG88549.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758]
          Length = 1214

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 34/224 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +  T+ +Q +      +  VSA AGSGKT +LV+R++  L  +A+P     +L +T+T+
Sbjct: 2   GVKWTEEQQQVIDLRDHNILVSAAAGSGKTAVLVERIIARLTRDANPVDVDHMLIVTYTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+                A I K   + P+   + +   L+ T        K
Sbjct: 62  AAAAEMKERI---------------GAAIEKELEEDPSSEHLKRQSALIHTA-------K 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC ++++++    ++   F IA+E + K L ++  K  L +   + NE+  +  
Sbjct: 100 ITTIHSFCLSVIREYFHTIDLDPGFRIAEEGELKLLKQDVMKELLEAKYEEGNEDFLRFV 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                   D  +E +IS         +L  F  SY    + ++ 
Sbjct: 160 ETFATGREDLQVEEIIS---------RLYEFAGSYPDPEEWLDD 194


>gi|160938156|ref|ZP_02085512.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438960|gb|EDP16716.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1331

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 34/221 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ T  +Q +     R+  VSA AGSGKT +LV+R+++++     P     LL +T T A
Sbjct: 3   VNWTSKQQEVIDSRNRNLLVSAAAGSGKTAVLVERIIQMISEGDRPLDIDQLLVMTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                A + +   ++P    +     L+          ++
Sbjct: 63  AAAEMRERI---------------GAAVEQKLKERPEDEHLWLQAALIPQA-------QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  I++      +I   F I DE +   L  +     L +   + +EE  +   
Sbjct: 101 TTIDSFCLNIIRSHYNSLDIDPAFRIGDEGELSLLRGDCMGEMLENCYDEADEEFGRFVE 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                 +D  IE +I         L+   F  S+ W ++ +
Sbjct: 161 HFGRGKSDRGIEDVI---------LQAWQFSQSHPWPQEWL 192


>gi|20806785|ref|NP_621956.1| ATP-dependent exoDNAse beta subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|81590788|sp|Q8RCZ0|ADDA_THETN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|20515247|gb|AAM23560.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 1204

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 34/228 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ ++   +   ++  V+A AGSGKT +LV+R++ ++     P     LL +T T A
Sbjct: 3   VKWTEEQREAITTRGKNVLVAAAAGSGKTAVLVERIINIVTDPEKPVDIDRLLVVTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+EM  R+ E + +               +  + P    ++    LL           +
Sbjct: 63  AASEMRERIAERLIS---------------LLDQHPEDKRLADQLTLL-------NKATI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC  ++++     ++   F + D+ ++  L  EA +     +   N+E     F 
Sbjct: 101 TTIHSFCLDVVRKHFFLLDLDPSFRVGDDTETLLLKLEAMEELFEELYEKNDE----GFL 156

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            ++E       +  + D++     LKL  F  S  W  K +   L + 
Sbjct: 157 LLVESYGGTKGDQYLQDVL-----LKLYGFIRSLPWPEKWLNNVLEAF 199


>gi|91205173|ref|YP_537528.1| ATP-dependent helicase [Rickettsia bellii RML369-C]
 gi|157827491|ref|YP_001496555.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389]
 gi|91068717|gb|ABE04439.1| ATP-dependent helicase [Rickettsia bellii RML369-C]
 gi|157802795|gb|ABV79518.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389]
          Length = 809

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+   +   +LCLT T AA+ EM  R+ 
Sbjct: 5   QQQASDPDYSIWVSASAGTGKTKILTDRFLRLLIKGVNFQNILCLTFTNAASIEMQLRIS 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +  +S    + L  E+  + G+KP   ++  A++L   +L+    L + TIHAFC+ I
Sbjct: 65  NKLKTFSLCDPKQLEQELFLMSGQKPLALELENAKNLYSKLLDNNEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++ FP+EA IT  F I +E Q + +  + +     S      +E       +L   ++  
Sbjct: 125 LKIFPVEAGITPEFQILEETQLQDIFLKIRNEIYLS------DEHNDLIKTLLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYLWR 230
           ++ + S+II  +   K +F   +   +
Sbjct: 179 LQDIFSEIIDEKIKFKKLFTHKTIPAK 205


>gi|182679138|ref|YP_001833284.1| double-strand break repair helicase AddA [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635021|gb|ACB95795.1| double-strand break repair helicase AddA [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 1164

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 87/216 (40%), Positives = 125/216 (57%), Gaps = 1/216 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T   Q  ASDP  S WVSA+AGSGKTH+L QRV+R+LL    P+ +LCLT TKAAAA M+
Sbjct: 8   TLERQKKASDPATSIWVSAHAGSGKTHVLAQRVIRILLRGVPPAKILCLTFTKAAAANMA 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +  W+ L D  L  EI       P  +D+  AR L    +ETPGGLK+QT+HAF
Sbjct: 68  ARVFDRLALWTRLDDATLRQEIIATGAPAPEAADLLLARKLFARTVETPGGLKIQTLHAF 127

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           CE ++  FP EAN+ S F++ +EE+ K+L E+A+ + L       +  L+ A   + E  
Sbjct: 128 CEKLLHLFPFEANVPSRFSVVEEERQKELFEQARHTILHEA-EGKDHPLRGALALLTESC 186

Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           + +  E LI + ++      L     + +  RK ++
Sbjct: 187 SSDRFENLIKEAMARGALGPLATGHHAEIGLRKALD 222


>gi|332185666|ref|ZP_08387413.1| double-strand break repair helicase AddA [Sphingomonas sp. S17]
 gi|332014024|gb|EGI56082.1| double-strand break repair helicase AddA [Sphingomonas sp. S17]
          Length = 1148

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   K +Q  ASDPT   W+SA+AG+GKT +L  RV RLLL    P ++LCLT TKA AA
Sbjct: 4   LPPLKGDQAAASDPTAHVWLSASAGTGKTQVLAARVFRLLLRGVAPESILCLTFTKAGAA 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQT 135
           EM+ R+   + AW  + +  L A++ K  G+        +AR L   +L+ PGG L++QT
Sbjct: 64  EMAQRINGRLAAWVRMPETELFADL-KALGETAGPELRERARTLFARVLDAPGGGLRIQT 122

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH FC+ ++  FP+EA +   F   +  +   L  EA    L +   +      +    +
Sbjct: 123 IHGFCQGLLAAFPVEAGLAPGFRPLEAREEAVLAREALARMLETAEREGRVGPVETVGAL 182

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                +   E  ++       AL+ +       W R+ ++
Sbjct: 183 SLRLGEGGAEAFLAACAHAPAALEALP-SGILPWLRRALD 221


>gi|157826193|ref|YP_001493913.1| ATP-dependent helicase [Rickettsia akari str. Hartford]
 gi|157800151|gb|ABV75405.1| ATP-dependent helicase [Rickettsia akari str. Hartford]
          Length = 818

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    P+ +LCLT T +AA EM  R+ 
Sbjct: 5   QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPTNILCLTFTNSAAIEMKARIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S    E L  E+  + G KP   ++  A+ L   IL++   L + TIHAFC+ I
Sbjct: 65  SKLKHLSLCDAENLENELFLMSGNKPLPQEIENAKTLYDKILKSNEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  FPLEA IT  F I +E + + +    +     S      +E       +L   ++  
Sbjct: 125 LNTFPLEAGITPEFKILEETKLQDIFLNIRNEIYLS------DEHNDFIKILLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYLW 229
           ++ + ++II  +   K +F   +   
Sbjct: 179 LQDIFNEIIDQKIKFKKLFTHKTIPN 204


>gi|260752463|ref|YP_003225356.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551826|gb|ACV74772.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 1162

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 1/192 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   ++EQL ASDP  + W+SA+AG+GKTH+L  RVLRLLL  A P ++LCLT TKA AA
Sbjct: 7   LMPLEAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS R+ + +  W    ++    E  +  G + ++  ++ AR L   +L+ PGGL++QTI
Sbjct: 67  EMSERINQRLAKWVIQLNDDELREELQALGARYDRDTLALARTLFARVLDAPGGLRIQTI 126

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC++++  FP+EA +   F + +  +     ++     L                 + 
Sbjct: 127 HSFCQSLLTAFPVEAGLIPGFQLIEGREEATEAKKTLTRILDH-QTPPYHIKDDDIALLA 185

Query: 197 EISNDEDIETLI 208
           E   ++  E  I
Sbjct: 186 EKLGEQGAEDYI 197


>gi|56551994|ref|YP_162833.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543568|gb|AAV89722.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 1162

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 1/192 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   ++EQL ASDP  + W+SA+AG+GKTH+L  RVLRLLL  A P ++LCLT TKA AA
Sbjct: 7   LMPLEAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS R+ + +  W    ++    E  +  G + ++  ++ AR L   +L+ PGGL++QTI
Sbjct: 67  EMSERINQRLAKWVIQLNDDELREELQALGARYDRDTLALARTLFARVLDAPGGLRIQTI 126

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC++++  FP+EA +   F + +  +     ++     L    L            + 
Sbjct: 127 HSFCQSLLTAFPVEAGLIPGFQLIEGREEATEAKKTLTRILDHQTL-PYHIKDDDIALLA 185

Query: 197 EISNDEDIETLI 208
           E   ++  E  I
Sbjct: 186 EKLGEQGAEDYI 197


>gi|238650390|ref|YP_002916242.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic]
 gi|238624488|gb|ACR47194.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic]
          Length = 822

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+ 
Sbjct: 5   QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  FPLEA IT  F I +E + + +    +       + D + +L K    +L   ++  
Sbjct: 125 LNTFPLEAGITPEFTILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   + +F      
Sbjct: 179 LQDIFTEIIEQQIKFRKLFINKQIP 203


>gi|229587088|ref|YP_002845589.1| ATP-dependent helicase [Rickettsia africae ESF-5]
 gi|228022138|gb|ACP53846.1| ATP-dependent helicase [Rickettsia africae ESF-5]
          Length = 822

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+ 
Sbjct: 5   QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  FPLEA IT  F I +E + + +    +       + D + +L K    +L   ++  
Sbjct: 125 LNTFPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   + +F      
Sbjct: 179 LQDIFTEIIEQKIKFRKLFINKQIP 203


>gi|34581275|ref|ZP_00142755.1| ATP-dependent helicase [Rickettsia sibirica 246]
 gi|28262660|gb|EAA26164.1| ATP-dependent helicase [Rickettsia sibirica 246]
          Length = 822

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+ 
Sbjct: 5   QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  FPLEA IT  F I +E + + +    +       + D + +L K    +L   ++  
Sbjct: 125 LNTFPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   + +F      
Sbjct: 179 LQDIFTEIIEQKIKFRKLFINKQIP 203


>gi|15893037|ref|NP_360751.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7]
 gi|15620238|gb|AAL03652.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7]
          Length = 822

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+ 
Sbjct: 5   QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  FPLEA IT  F I +E + + +    +       + D + +L K    +L   ++  
Sbjct: 125 LNTFPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   + +F      
Sbjct: 179 LQDIFTEIIEQKIKFRKLFINKQIP 203


>gi|169343377|ref|ZP_02864381.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str.
           JGS1495]
 gi|169298463|gb|EDS80549.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str.
           JGS1495]
          Length = 1271

 Score =  184 bits (468), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            TK ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA
Sbjct: 5   WTKEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K   K P+   + +   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ + + + +      LA +  D   +  + F ++
Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  ++ II     LK   F  S  W    ++  +   
Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPETWLKDKVEEF 199


>gi|110802763|ref|YP_697370.1| recombination helicase AddA [Clostridium perfringens SM101]
 gi|123342114|sp|Q0SWW4|ADDA_CLOPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|110683264|gb|ABG86634.1| recombination helicase AddA [Clostridium perfringens SM101]
          Length = 1270

 Score =  184 bits (468), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA
Sbjct: 5   WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K   K P+   + +   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ + + + +      LA +  D   +  + F ++
Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  ++ II     LK   F  S  W    ++  +   
Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPESWLKDKVEEF 199


>gi|168214037|ref|ZP_02639662.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str.
           F4969]
 gi|170714486|gb|EDT26668.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str.
           F4969]
          Length = 1271

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA
Sbjct: 5   WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K   K P+   + +   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ + + + +      LA +  D   +  + F ++
Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  ++ II     LK   F  S  W    +   +   
Sbjct: 159 VESYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLNDKVEEF 199


>gi|168217733|ref|ZP_02643358.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC
           8239]
 gi|182380203|gb|EDT77682.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC
           8239]
          Length = 1271

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA
Sbjct: 5   WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K   K P+   + +   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ + + + +      LA +  D   +  + F ++
Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  ++ II     LK   F  S  W    +   +   
Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLNDKVEEF 199


>gi|67458566|ref|YP_246190.1| ATP-dependent helicase [Rickettsia felis URRWXCal2]
 gi|67004099|gb|AAY61025.1| ATP-dependent helicase [Rickettsia felis URRWXCal2]
          Length = 815

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    P+ +LCLT T AA+ EM  R+ 
Sbjct: 5   QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPANILCLTFTNAASIEMQARIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S    + L  E+  + G KP   ++  A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKHLSLCDTKKLEEELFLMSGNKPLPQEIENAKTLYDKILNSNEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++ FPLEA IT  F I +E + + +    +       + D + +L K    +L   ++  
Sbjct: 125 LKTFPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLIKI---LLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   K +F   +  
Sbjct: 179 LQDIFTEIIEQKIKFKKLFTHKTIP 203


>gi|312113012|ref|YP_004010608.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218141|gb|ADP69509.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 1282

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +++   +Q  A+DP+ SAWV ANAG+GKTH+LVQR+LRL LA A P ++LCLT TK AAA
Sbjct: 10  LAEASRKQRSAADPSVSAWVRANAGTGKTHVLVQRILRLCLAGAAPRSILCLTFTKNAAA 69

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RVL+ +  W+      L A +  +  +     +++ AR L  T+ + PGGL + TI
Sbjct: 70  EMEARVLKTMGEWATADAATLEAALAALLDRPAEAGELAAARTLFATVTDAPGGLPIMTI 129

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFCE ++++F  EAN+   F +  EE+++        +  A+     +  ++ A    +
Sbjct: 130 HAFCERLLRRFSFEANVPPGFTVMTEEEARD---ALAAAKAAAFSEAKSGAMRDALATAV 186

Query: 197 EISNDEDIETLISDIISNRTALKLIF 222
             + +++   ++ D++ +R  +  + 
Sbjct: 187 AHAGEDEFGRVLKDMLGHRRTIHYLL 212


>gi|18309003|ref|NP_560937.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens
           str. 13]
 gi|81768348|sp|Q8XPE2|ADDA_CLOPE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|18143678|dbj|BAB79727.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens
           str. 13]
          Length = 1268

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA
Sbjct: 5   WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K   K P+   + +   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KALEKDPSSKVLQRQLALL-------NRASITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ + + + +      LA +  D   +  + F ++
Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  ++ II     LK   F  S  W    ++  +   
Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLKDKVEEF 199


>gi|110799297|ref|YP_694494.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC
           13124]
 gi|122959147|sp|Q0TV46|ADDA_CLOP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|110673944|gb|ABG82931.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC
           13124]
          Length = 1271

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA
Sbjct: 5   WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K   K P+   + +   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KALEKDPSSEALQRQLALL-------NRASITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ + + + +      LA +  D   +  + F ++
Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  ++ II     LK   F  S  W    ++  +   
Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPETWLKDKVEEF 199


>gi|168210476|ref|ZP_02636101.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711446|gb|EDT23628.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str.
           ATCC 3626]
          Length = 1271

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA
Sbjct: 5   WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K   K P+   + +   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ + + + +      LA +  D   +  + F ++
Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  ++ II     LK   F  S  W    +   +   
Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLNDKVEEF 199


>gi|182625416|ref|ZP_02953189.1| recombination helicase AddA [Clostridium perfringens D str.
           JGS1721]
 gi|177909413|gb|EDT71865.1| recombination helicase AddA [Clostridium perfringens D str.
           JGS1721]
          Length = 1271

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA
Sbjct: 5   WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K   K P+   + +   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KALEKDPSSEVIQRQLALL-------NRASITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ + + + +      LA +  D   +  + F ++
Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  ++ II     LK   F  S  W    +   +   
Sbjct: 159 VESYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLNDKVEEF 199


>gi|291549061|emb|CBL25323.1| recombination helicase AddA, Firmicutes type [Ruminococcus torques
           L2-14]
          Length = 1239

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 34/223 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ +Q +     R+  VSA AGSGKT +LV+R++  +     P     LL +T+T+A
Sbjct: 3   VKWTEEQQKVIDLRDRNILVSAAAGSGKTAVLVERIISRITDENDPADVDRLLVVTYTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                A I K   ++P   ++ +   L+           +
Sbjct: 63  AAAEMKERI---------------GAAIEKKLEEQPGNVNLEQQSTLIHNA-------SI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC ++++       I   F IA+E + + L+++  +  + +   + +E       
Sbjct: 101 MTIHSFCLSVIRDHFHVIGIDPAFRIAEEGELRLLMQDVLEELIENFYAEGSEAFLNFVD 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +     ND+ IE LI         L+L  +  SY    K +++
Sbjct: 161 QYGTGRNDQKIEELI---------LQLYEYSRSYPQPEKWLKE 194


>gi|212640054|ref|YP_002316574.1| ATP-dependent exoDNAse (exonuclease V) subunit beta (contains
           helicase and exonuclease domains) [Anoxybacillus
           flavithermus WK1]
 gi|251764497|sp|B7GM51|ADDA_ANOFW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|212561534|gb|ACJ34589.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Anoxybacillus
           flavithermus WK1]
          Length = 1209

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 34/221 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        +   V+A AGSGKT +LV+R+++ +L    P     LL +T T AAA
Sbjct: 11  WTDEQWQAIYATGQHTLVAAAAGSGKTAVLVERIIQKILHKERPIDVDRLLVVTFTNAAA 70

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                +   K+P+   + +   LL           + T
Sbjct: 71  AEMRQRIGEAL---------------ERALEKEPHSLHLRRQLSLLQKA-------SIST 108

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++++     I   F IADE +   L EE  ++       +N+E         
Sbjct: 109 IHSFCLDVIRKYYYVIGIDPVFRIADEGEMALLKEEVLETLFEQYYAENDEPFLTVVDRY 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                D D++TLI         L+L  F  S+      +++
Sbjct: 169 TSDRTDADLQTLI---------LRLYEFSRSHPNPSGWLQQ 200


>gi|291562493|emb|CBL41309.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [butyrate-producing
           bacterium SS3/4]
          Length = 571

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 37/228 (16%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  ++ +     R+  VSA AGSGKT +LV+R++R++    HP     LL +T T AAA
Sbjct: 5   WTDEQKKVIETRHRNLLVSAAAGSGKTAVLVERIIRMITDPEHPVDIDKLLVMTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  RV   +                K+  + P   ++ +   L+          K+ T
Sbjct: 65  AEMRERVETALG---------------KLLDEDPGNKNLERQNTLIHHA-------KITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++   E ++   F +ADE +   L  +  K  L       +E   K     
Sbjct: 103 IDSFCLNLLREHFHELDLDPGFRVADEGELMLLKADVMKELLEEYYGREDERFIKFVDTY 162

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII---EKSLWS 240
                D  +E  I         LK+  F  S  W  + I    K LW+
Sbjct: 163 ATGRTDGGLEEYI---------LKVWEFSQSNPWPGEWIAACRKELWA 201


>gi|15604569|ref|NP_221087.1| ATP-dependent nuclease subunit A (addA) [Rickettsia prowazekii str.
           Madrid E]
 gi|3861264|emb|CAA15163.1| ATP-DEPENDENT NUCLEASE SUBUNIT A (addA) [Rickettsia prowazekii]
 gi|292572376|gb|ADE30291.1| ATP-dependent helicase [Rickettsia prowazekii Rp22]
          Length = 822

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  AS+P  S WVSA+AG+GKT IL+ R LRLL+    P+ +LCLT T AAA EM  R+ 
Sbjct: 5   QQQASNPNTSVWVSASAGTGKTKILIDRFLRLLITGTEPTNILCLTFTNAAAIEMQARIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   +    E L  E+  + G KP   +++  + L   +L +   L + TIHAFC+ I
Sbjct: 65  SKLKYLALCDAEKLENELFLMSGNKPLPQEIANTKTLYYKLLNSHEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++ FPLEA IT  F I +E + + +  + K     S      +E  +    +L   ++  
Sbjct: 125 LKTFPLEAGITPEFKILEETKLQDIFLKIKNEIYLS------DEHNEVIQILLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   K +F      
Sbjct: 179 LQDIFTEIIEQKIKFKKLFINKQIP 203


>gi|51473902|ref|YP_067659.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington]
 gi|51460214|gb|AAU04177.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington]
          Length = 823

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  AS+P  S WVSA+AG+GKT IL+ R LRLL+    P+ +LCLT T AAA EM  R+ 
Sbjct: 5   QQQASNPNTSVWVSASAGTGKTKILIDRFLRLLITGTEPTNILCLTFTNAAAIEMQARIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   +    E L+ E+  + G KP   ++   + L   +L +   L + TIHAFC+ I
Sbjct: 65  SKLKHLALCDTEKLANELFLMSGNKPLAQEIENTKTLYYKLLNSHEPLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++ FPLEA IT  F I +E + + +  + K     S      +E  K    +L   ++  
Sbjct: 125 LKTFPLEAGITPEFKILEETKLQDIFLKIKNEIYLS------DEHNKLIQILLNRFHEMT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   K +F      
Sbjct: 179 LQDIFTEIIEQKIKFKKLFINKQIP 203


>gi|168206214|ref|ZP_02632219.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str.
           JGS1987]
 gi|170662326|gb|EDT15009.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str.
           JGS1987]
          Length = 1271

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++L  +    +  V+A AGSGKT +LV+R+++++    +P     LL +T T AAA
Sbjct: 5   WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K   K P+   + +   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ + + + +      L  +  D   +  + F ++
Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILGDLFEDMYAKDDECFKDL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E       +  ++ II     LK   F  S  W    ++  +   
Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLKDKVEEF 199


>gi|167761630|ref|ZP_02433757.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704]
 gi|167660773|gb|EDS04903.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704]
          Length = 1200

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 34/228 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ TK +Q +     R+  VSA AGSGKT +LV+R++ +L  +  P     LL +T T+A
Sbjct: 3   VTWTKEQQKVIDLRNRNILVSAAAGSGKTAVLVERIITMLTEDESPVDVDRLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                  I K   + P    + +   L+          ++
Sbjct: 63  AAAEMKERIRN---------------AIEKKLEEYPGNEHLKQQATLIHNA-------QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC ++++      +I   F I +E + K L  +  +  L      N +       
Sbjct: 101 TTIHSFCLSVIRDHFHAIDIDPGFRIGEEGELKLLRHDVLEDMLEDRYQRNEQRFLDFAA 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 +D+ +E L+         LK+  +  SY      +   L + 
Sbjct: 161 AYGGGRSDKKVEELV---------LKIYEYSRSYPDSEGWLSSCLEAY 199


>gi|239625645|ref|ZP_04668676.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519875|gb|EEQ59741.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1326

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 34/223 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ +Q +     R+  VSA AGSGKT +LV+R+++++    HP     LL +T T A
Sbjct: 3   VKWTEKQQQVIDSRNRNLLVSAAAGSGKTAVLVERIIQMISGGDHPLDIDQLLVMTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                A + K   + P    +     L+   +       +
Sbjct: 63  AAAEMRERI---------------GAAVEKKLKEHPEDEHLWLQAALIPQAM-------I 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  I++      +I   F I DE +   L  +     L +   + +E       
Sbjct: 101 TTIDSFCLNIIRNHFNSLDIDPSFRIGDEGELSLLRGDVMGEMLEACYEEGDEAFAGFVE 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                 +D+ IE +I         L+   F  S+ W    ++ 
Sbjct: 161 HFGRGKSDKGIEDVI---------LQAWQFSQSHPWPSLWLKA 194


>gi|165933684|ref|YP_001650473.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa]
 gi|165908771|gb|ABY73067.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa]
          Length = 822

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+ 
Sbjct: 5   QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  FP EA IT  F I +E + + +    +       + D + +L K    +L   ++  
Sbjct: 125 LNTFPSEAGITPEFTILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   + +F      
Sbjct: 179 LQDIFTEIIEQQIKFRKLFINKQIP 203


>gi|157828959|ref|YP_001495201.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|157801440|gb|ABV76693.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 822

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+ 
Sbjct: 5   QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L   +  + G KP+  D   A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  FP EA IT  F I +E + + +    +       + D + +L K    +L   ++  
Sbjct: 125 LNTFPSEAGITPEFTILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   + +F      
Sbjct: 179 LQDIFTEIIEQQIKFRKLFINKQIP 203


>gi|121535716|ref|ZP_01667519.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans
           Nor1]
 gi|121305681|gb|EAX46620.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans
           Nor1]
          Length = 1246

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 34/223 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
           + + +  ++       ++  V+A AGSGKT +LVQR++  +L    P     LL +T T 
Sbjct: 1   MSNWSPEQRAAIEARGQNLLVAAAAGSGKTSVLVQRIIDRILDKTAPVNVDALLVVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+ + +TA     +                          L   L       
Sbjct: 61  AAAAEMRERIAQALTAELAKGERT----------------------RYLERQLLLLNQAS 98

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC+++++Q+    ++   F IA E ++  L    +  TL +++ +  E+  +AF
Sbjct: 99  ISTIHSFCQSVVRQYFYRLDLDPQFRIAGEGETTLL----RSDTLEALLAERYEQGDEAF 154

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +++   DE  ++ ++ +I     L+L  F  S  W    + 
Sbjct: 155 LTLVDHYGDERDDSSLAGLI-----LRLYEFARSQPWPEHWLR 192


>gi|209543463|ref|YP_002275692.1| double-strand break repair helicase AddA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531140|gb|ACI51077.1| double-strand break repair helicase AddA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1185

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 122/241 (50%), Gaps = 27/241 (11%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------------LL 57
           +D I    + Q  ASDP  S +VSA+AGSGKT +L+ R+LRL                LL
Sbjct: 4   LDAIGLANARQGEASDPGASVFVSASAGSGKTKLLIDRLLRLMLPRPAPDARGDGAGDLL 63

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           A A P+ + CLT TKAAAAEM+ R+ + + +W  L D  L  E+  +    P ++    A
Sbjct: 64  AGADPARIQCLTFTKAAAAEMAIRLQKRLGSWVTLPDASLDRELAFLS-VPPCEATRRAA 122

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           R L   +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + ++  ++  + E+ ++ +
Sbjct: 123 RELFARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEDTDARIAMGESVEAVV 182

Query: 178 ASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                        A   +       D   LI  + +    L+ +         R  IE +
Sbjct: 183 GG--------GGPAVAILASQIGAGDFAALIGGLQARLRQLQPVITALEQD--RAAIEAA 232

Query: 238 L 238
           L
Sbjct: 233 L 233


>gi|225570785|ref|ZP_03779808.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM
           15053]
 gi|225160247|gb|EEG72866.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM
           15053]
          Length = 1204

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 34/223 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ T+ +Q +     R+  VSA AGSGKT +LV+R++ +L     P    +LL +T T+A
Sbjct: 3   VAWTEEQQKVIDLRKRNILVSAAAGSGKTAVLVERIIAMLTDAEDPVSVESLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ +                I K   +      +     L+ +        ++
Sbjct: 63  AAAEMKERIRD---------------AIEKKISEDGENEHLKTQATLIHSA-------QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC ++++      +I   F +A+E + K +    K   L  ++ DN EE  +AF 
Sbjct: 101 TTIHSFCLSVIRDHFHAIDIDPGFRVAEEGELKLM----KHDVLGQVLEDNYEEGGEAFQ 156

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           E +E       +  I +++     LKL  +  SY      ++ 
Sbjct: 157 EFVEAYGSGRDDRKIEELV-----LKLYEYSRSYPDPGGWLQS 194


>gi|241761923|ref|ZP_04760008.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373603|gb|EER63175.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 1162

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 104/192 (54%), Gaps = 1/192 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   ++EQL ASDP  + W+SA+AG+GKTH+L  RVLRLLL  A P ++LCLT TKA AA
Sbjct: 7   LMPLEAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS R+ + +  W    ++    E  +  G + ++  ++ AR L   +L+  GGL++QTI
Sbjct: 67  EMSERINQRLAKWVIQLNDDELREELQALGARYDRDTLALARTLFARVLDATGGLRIQTI 126

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC++++  FP+EA +   F + +  +     ++     L                 + 
Sbjct: 127 HSFCQSLLTAFPVEAGLIPGFQLIEGREEATEAKKTLTRILDH-QTPPYHIKDDDIALLA 185

Query: 197 EISNDEDIETLI 208
           E   ++  E  I
Sbjct: 186 EKLGEQGAEDYI 197


>gi|164687184|ref|ZP_02211212.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM
           16795]
 gi|164603608|gb|EDQ97073.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM
           16795]
          Length = 1349

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 34/231 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTH 70
           +     T+ +Q +      +  V+A AGSGKT +LV+R+++++L          LL +T 
Sbjct: 1   MSSPKWTQEQQNVIDSRGGNLLVAAAAGSGKTAVLVERIIQMILNSDLKIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA+EM  R+ + I+               K   + P    +     LL         
Sbjct: 61  TNAAASEMRERIGDAIS---------------KKLDENPEDEHLQDQLVLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++    + N+  +F I DE +   +  EA   T   +   N+EE   
Sbjct: 99  ASITTIHSFCLEVIKSNFHKINLDPNFRIGDETECSLMKLEAIDETFDILYEQNDEEFCY 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 E   D +++ LI         L +  F  S  + +  +++S    
Sbjct: 159 LVDCYAEKRGDSNLQNLI---------LSIYSFVMSSPYPKVWLKESAEDF 200


>gi|225574652|ref|ZP_03783262.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038120|gb|EEG48366.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1221

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 34/224 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            ++ T  ++ +     R+  VSA AGSGKT +LV+R+++ +     P     LL +T T+
Sbjct: 2   GVNWTSEQRKVIELRDRNILVSAAAGSGKTAVLVERIIQRITDEEKPVDIDRLLVMTFTR 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+ + ++               K   + P    + +   LL          +
Sbjct: 62  AAAGEMRVRLEQALS---------------KRLEEDPENEYLQRQSTLLHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI  FC  +++ +    ++   +  ADE + K L  +  +  L       + + ++  
Sbjct: 100 ITTIDGFCSYLIRNYFHMIDLDPGYRTADEGELKLLRVDVVREVLEECYAQKSSDFEEFA 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                  +DE +E L+         LKL  F  S  W  + + +
Sbjct: 160 ECFAPGKSDEGLEELV---------LKLYDFAMSAPWPEEWLSQ 194


>gi|225388060|ref|ZP_03757784.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme
           DSM 15981]
 gi|225045883|gb|EEG56129.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme
           DSM 15981]
          Length = 383

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 34/221 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ +Q +     R+  VSA AGSGKT +LV+R++R++    HP     LL +T T A
Sbjct: 3   VKWTEKQQQVIHSRNRNLLVSAAAGSGKTAVLVERIIRMISEGEHPLNIDQLLVMTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV                A + K+    P+   +     L+          ++
Sbjct: 63  AAAEMRERV---------------GAAVDKLLTVCPDDEHLWLQGALIPQA-------QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  +++       I   F I DE +   +  +  K  L     +  E+      
Sbjct: 101 TTIDSFCLNLIRNHYSSLEIDPAFRIGDEGELALMRADVMKEMLEWHYQEGGEDFAAFVE 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +     +D  IE +I         L+   F  S+ W  + +
Sbjct: 161 QFGRGKSDAGIEDVI---------LQAWQFSQSHPWPMEWV 192


>gi|329847172|ref|ZP_08262200.1| double-strand break repair helicase AddA [Asticcacaulis
           biprosthecum C19]
 gi|328842235|gb|EGF91804.1| double-strand break repair helicase AddA [Asticcacaulis
           biprosthecum C19]
          Length = 1174

 Score =  181 bits (459), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 7/208 (3%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A+DP  S +++ANAGSGKT  LV RV RLLL+ A P+ +LC+T+TKAAAAEM  R+ + 
Sbjct: 19  IAADPKASCFLTANAGSGKTSTLVNRVARLLLSRADPAHILCVTYTKAAAAEMQERLFQQ 78

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +  W+   DE L  ++ +I        D+ +AR L    LETPGGLK+QTIHAFCE +++
Sbjct: 79  LGGWAVADDEQLIGDLERIGEP---THDLPRARALFAKALETPGGLKIQTIHAFCEKLLR 135

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           +FPLEA ++  F + D+  +  L ++A  + L ++     E + +    ++        E
Sbjct: 136 RFPLEAQLSPAFKVLDDLLADDLADKASTAVL-TLDAPGLEAVAETRDRLIRKLKVMGFE 194

Query: 206 TLISDIISNRTALKLIF---FFFSYLWR 230
            L+   I    AL+  F      S  W+
Sbjct: 195 KLLGQFIHQHDALQERFRHLENQSEDWQ 222


>gi|289577484|ref|YP_003476111.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9]
 gi|289527197|gb|ADD01549.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9]
          Length = 1230

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 33/227 (14%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +QL  +    +  V+A AGSGKT +LV+R++RL+    +P     LL +T T AA
Sbjct: 4   TWTHEQQLAINTRGNNLLVAAGAGSGKTAVLVERIIRLITDKENPVDIDRLLVVTFTNAA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R+ + + +                  + P    +S    LL           + 
Sbjct: 64  ASEMRERIADALIS---------------KLDQNPEDRRLSNQLTLL-------NKATIT 101

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+FC  +++      ++  +F I D+ ++  L  EA +     +    +    + F  
Sbjct: 102 TIHSFCLEVVRNNFFLIDLDPNFRIGDDTETLLLKLEAAEELFEELYQKED---NQDFLM 158

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           ++E       +  + D++     L+L  F  S  W  K + + L + 
Sbjct: 159 LIESYGGTRDDKPLVDVL-----LRLYNFVKSLPWPEKWLMEMLLNF 200


>gi|158321312|ref|YP_001513819.1| recombination helicase AddA [Alkaliphilus oremlandii OhILAs]
 gi|251764496|sp|A8MJ41|ADDA_ALKOO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|158141511|gb|ABW19823.1| Recombination helicase AddA [Alkaliphilus oremlandii OhILAs]
          Length = 1197

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 31/228 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           +   TK +Q        +  V+A AGSGKT +LV+R+++++L +      LL +T T AA
Sbjct: 1   MRQWTKEQQAAIDARGSNLLVAAAAGSGKTAVLVERIIQIILKDRIDIDRLLIVTFTNAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   I              +T+++ K   +  + +   LL           + 
Sbjct: 61  AGEMRERIAGAI--------------MTEMEKKTGGEEHLRRQLSLL-------NRASIT 99

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  ++++     ++   F I D  ++  +  EA    L  +  D  E+  + F+ 
Sbjct: 100 TVHSFCIDVVRRHFHMIDVDPGFRIGDVTETSIMKLEA----LEELFEDEYEKGNEEFFN 155

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           ++E       +  + D++     LK+  F  S  +    + + +   A
Sbjct: 156 LVEAFGGTREDRPLQDLV-----LKIYGFIQSQPYPEIWLRERVEDFA 198


>gi|157964875|ref|YP_001499699.1| ATP-dependent helicase [Rickettsia massiliae MTU5]
 gi|157844651|gb|ABV85152.1| ATP-dependent helicase [Rickettsia massiliae MTU5]
          Length = 822

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q  ASDP  S WVSA+AG+GKT IL  R LRLL+    PS +LCLT T AAA EM  R+ 
Sbjct: 5   QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   S  + E L   +  + G KP+  +   A+ L   IL +   L + TIHAFC+ I
Sbjct: 65  SRLKYLSLCNAEKLEEALFLMSGNKPSPQETENAKTLYDKILNSNKLLNIYTIHAFCQKI 124

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PLEA IT  F I +E + + +    +     S      +E       +L   ++  
Sbjct: 125 LKTVPLEAGITPEFKILEETKLQDIFLNIRNEIYLS------DEHNDLITILLNRFHEIT 178

Query: 204 IETLISDIISNRTALKLIFFFFSYL 228
           ++ + ++II  +   + +F      
Sbjct: 179 LQDIFTEIIEQKIKFRKLFINKQIP 203


>gi|154502322|ref|ZP_02039382.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
 gi|153796947|gb|EDN79367.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
          Length = 1194

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 34/221 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T+ ++ +     R+  VSA AGSGKT +LV+R+++ LL    P     LL +T T+A
Sbjct: 3   VQWTEDQKKVIELRNRNILVSAAAGSGKTAVLVERIIQRLLDERDPLDVDRLLIVTFTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ +                I       P    + +   L+ +        ++
Sbjct: 63  AAAEMKERIRD---------------AIENALEDTPGNVHLQRQATLIHSA-------RI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC +++++     N+   F IA+E + K L ++  +  L S   +  E   +   
Sbjct: 101 TTIHSFCLSVIREHFHAINLDPGFRIAEEGELKLLRQDVLEEMLESCYDEGTEAFLEFAE 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +     +D  +E +I         L+L  +  SY    K +
Sbjct: 161 KFSTGRSDRQLEEVI---------LQLYEYAGSYPQPEKWL 192


>gi|253580235|ref|ZP_04857501.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848328|gb|EES76292.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1269

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 34/223 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +  TK +Q +     R+  VSA AGSGKT +LV+R+L  +    HP     LL +T T+
Sbjct: 2   GVQWTKEQQEVIRLRDRNILVSAAAGSGKTAVLVERILSKITDKEHPVDIDRLLIMTFTR 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+               SA I K   + P+   + +   LL T        +
Sbjct: 62  AAAGEMKERI---------------SAAIEKALCEDPDNEHLQRQTTLLHTA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI  FC  I++ +     +   +  ADE + K L  +  K+ L       +E+ +K  
Sbjct: 100 ITTIDGFCAYIIRNYFHLIGLDPGYRTADEGELKLLRGDVVKALLEEYYAKKDEKFQKFV 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                  +DE++  LI          KL     S  + ++ + 
Sbjct: 160 ECFATGKSDENLGNLIQ---------KLYEMAMSNPFPQEWLS 193


>gi|160881547|ref|YP_001560515.1| recombination helicase AddA [Clostridium phytofermentans ISDg]
 gi|251764520|sp|A9KTE6|ADDA_CLOPH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|160430213|gb|ABX43776.1| recombination helicase AddA [Clostridium phytofermentans ISDg]
          Length = 1377

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 34/222 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           S T  +Q +      +  VSA AGSGKT +LV+R++  + +   P     LL +T TKAA
Sbjct: 5   SWTPGQQKVIDTRDCNLLVSAAAGSGKTAVLVERIINRITSENSPINIDQLLIVTFTKAA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+                A I K   ++P+   + K   LL +        ++ 
Sbjct: 65  AGEMRERI---------------GAAIEKKVLEQPDNVHLQKQLTLLYSA-------QIT 102

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TI +FC ++++      ++   F IA+E +   L    K   LA+++ +  EE  + F E
Sbjct: 103 TIDSFCLSVIRNHFHTIDLDPSFRIAEEAELMLL----KSDVLATLLEEKYEEGAEDFLE 158

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +E  +    +  I + I     LKL  F  SY +  + +E+
Sbjct: 159 FVECYSASKSDEPIENFI-----LKLYQFSQSYPYPHEWLEE 195


>gi|331268546|ref|YP_004395038.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925]
 gi|329125096|gb|AEB75041.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925]
          Length = 1244

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 32/233 (13%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCL 68
             +  +  TK +Q        +  VSA AGSGKT +LV+R+++++    +P     LL +
Sbjct: 10  RVLSEVKWTKEQQQAIDIHGCNLLVSAAAGSGKTAVLVERIIKMITDLKNPVDIDRLLVV 69

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T AAA+EM  R+ + I                K   K P    + +   LL       
Sbjct: 70  TFTNAAASEMKERIAKAIG---------------KELTKHPKSRQLQRQLTLL------- 107

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + TIH+FC   ++      ++   F I DE ++  L  E  +     +    N   
Sbjct: 108 NRASITTIHSFCLETIKNNFHYIDLDPSFRIGDETETILLKGEIIEEIFDELYQPEN--C 165

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            + F +++E  +    +  + ++I     L L  F  S    +K +E      
Sbjct: 166 SEDFLKLVEFYSSNRDDLALQNMI-----LNLYNFVMSSPNPKKQLESMAEDF 213


>gi|297543796|ref|YP_003676098.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841571|gb|ADH60087.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 1230

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 33/227 (14%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +QL  +    +  V+A AGSGKT +LV+R++RL+    +P     LL +T T AA
Sbjct: 4   TWTHEQQLAINTRGNNLLVAAGAGSGKTAVLVERIIRLITDKENPVDIDRLLVVTFTNAA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R+ + + +                  + P    +S    LL           + 
Sbjct: 64  ASEMRERIADALIS---------------KLDQNPEDRRLSNQLTLL-------NKATIT 101

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+FC  +++      ++  +F I D+ ++  L  EA +     +    +    + F  
Sbjct: 102 TIHSFCLEVVRNNFFLVDLDPNFRIGDDTETLLLKLEAAEELFEELYQKED---NQDFLM 158

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           ++E       +  + D++     L+L  F  S  W  K + + L + 
Sbjct: 159 LIESYGGTRDDKPLVDVL-----LRLYNFVKSLPWPEKWLMEMLLNF 200


>gi|331082717|ref|ZP_08331840.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400336|gb|EGG79978.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1224

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 34/222 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +S T+ +Q +      +  VSA AGSGKT +LV+R+++ +    +P     LL +T T+
Sbjct: 2   GVSWTEEQQKVIDTRNCNILVSAAAGSGKTAVLVERIIQRITDKNNPVDIDELLIVTFTR 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+ +                I K     P    + +   L+   L       
Sbjct: 62  AAAGEMKERIRQ---------------AIEKKLEANPEDEHLQRQSTLVHHAL------- 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  I++ +    ++   F + DE + + L  +   + L     + +       
Sbjct: 100 ITTIDSFCSYIVKNYFHLIDLDPSFRMGDEGEMRLLQADVADAVLEEAYTEEDPSFLAFS 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                   D+ I  +I         +KL  F  SY +  + +
Sbjct: 160 DGFAGGKTDKKIPEMI---------IKLYSFSMSYPYPEEWL 192


>gi|253682207|ref|ZP_04863004.1| recombination helicase AddA [Clostridium botulinum D str. 1873]
 gi|253561919|gb|EES91371.1| recombination helicase AddA [Clostridium botulinum D str. 1873]
          Length = 1232

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 32/228 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK +Q        +  VSA AGSGKT +LV+R+++++    +P     LL +T T A
Sbjct: 4   VKWTKEQQQAIDIHGCNLLVSAAAGSGKTAVLVERIIKMITDLKNPVDIDRLLVVTFTNA 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+EM  R+ + I                K   K P    + +   LL           +
Sbjct: 64  AASEMKERIAKAIG---------------KELTKHPRSRQLQRQLTLL-------NRASI 101

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC   ++      ++   F I DE ++  L  +  +     +    N    + F 
Sbjct: 102 TTIHSFCLETIKNNFHYIDLDPSFRIGDETETILLKSQIIEEIFDELYEPEN--CSEDFL 159

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +++E  +    ++ + +++     L L  F  S    +K +E      
Sbjct: 160 KLVEFYSSNKDDSALQNMV-----LNLYNFVMSSPNPKKQLESMAEDF 202


>gi|153855193|ref|ZP_01996377.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
 gi|149752362|gb|EDM62293.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
          Length = 1221

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 34/224 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +  T+ ++ +     R+  VSA AGSGKT +LV+R++ +L  +  P     LL +T T+
Sbjct: 2   GVKWTEEQEKVIRLRNRNILVSAAAGSGKTAVLVERIITMLTKDDPPMDVDRLLIVTFTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA+EM  R+                  I K   + P+   + +   L+          +
Sbjct: 62  AAASEMKERIR---------------LAIEKKLMEYPDNEHLKQQATLIHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC ++++      +I   F I +E + K L  +  +  L     + ++      
Sbjct: 100 ITTIHSFCLSVIRDHFHAIDIDPGFRIGEEGELKLLRHDVLEDMLEEKYQEGSKRFLDFT 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                  ND+ IE LI         LK+  F  SY      ++ 
Sbjct: 160 AAYSTGRNDKKIEDLI---------LKIYEFSRSYPDSEAWLDS 194


>gi|258543653|ref|YP_003189086.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256634731|dbj|BAI00707.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256637787|dbj|BAI03756.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03]
 gi|256640841|dbj|BAI06803.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07]
 gi|256643896|dbj|BAI09851.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22]
 gi|256646951|dbj|BAI12899.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26]
 gi|256650004|dbj|BAI15945.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32]
 gi|256652994|dbj|BAI18928.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656048|dbj|BAI21975.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12]
          Length = 1190

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 108/173 (62%), Gaps = 11/173 (6%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------LLANAHPSTLL 66
           ISQ  ++Q LASDP+ S +VSA+AGSGKT +L+ R+LRL          +L  + P+ +L
Sbjct: 13  ISQANAQQALASDPSASVFVSASAGSGKTKLLIDRLLRLMLPRLAEDGSILPGSSPARIL 72

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           CLT TKAAAAEMS R+ + +  W  LSDE L  E+  +      +    +AR L   +L+
Sbjct: 73  CLTFTKAAAAEMSIRLQKRLGRWVTLSDEELDKELAGL-YVPCTEETRRRARALFAEVLD 131

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            PGG+++ TIHAFC++++++FPLEA++  HF + +E  +   ++   ++ L  
Sbjct: 132 LPGGMRIGTIHAFCQSLLRRFPLEASMNPHFTVMEETDASLALQACVEAILGQ 184


>gi|149182415|ref|ZP_01860891.1| AddA [Bacillus sp. SG-1]
 gi|148849878|gb|EDL64052.1| AddA [Bacillus sp. SG-1]
          Length = 1258

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 33/220 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAA 74
           + T  +        R   V+A AGSGKT +LV+R+++ +L      +   LL +T T A+
Sbjct: 13  TWTDDQWKAIWAKGRDILVAAAAGSGKTAVLVERIIQKILDKEDGINVDELLVVTFTNAS 72

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K     PN   + K   LL           + 
Sbjct: 73  AAEMRHRIGEAL---------------EKAISADPNSYHLRKQLSLL-------NRASIS 110

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    +I   F I D+ + + L +E             + +   +FY+
Sbjct: 111 TLHSFCLEVIRKYYYLIDIDPGFRILDDTEGELLRDEVLDELFEEEYGKEDND---SFYK 167

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +++   ++  +  + D+I      KL  F  S+    + +
Sbjct: 168 LVDTFTNDRSDAALQDMIR-----KLYDFSRSHPNPDEWL 202


>gi|182417613|ref|ZP_02948934.1| recombination helicase AddA [Clostridium butyricum 5521]
 gi|237669499|ref|ZP_04529479.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378532|gb|EDT76062.1| recombination helicase AddA [Clostridium butyricum 5521]
 gi|237654943|gb|EEP52503.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 1252

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV+R++R++    +P     LL +T T AAA
Sbjct: 6   WTDEQLSAIKTRNCNLLVAAAAGSGKTAVLVERIIRIITNKDNPVDIDKLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+               +A I+K   K+P   ++ K   LL           + T
Sbjct: 66  AEMRERI---------------AAAISKALDKEPTSKNLQKQLTLL-------NRANITT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++    + ++   F I D+ +   + +E  ++         + E        
Sbjct: 104 MHSFCLDVIKNNFHKIDLDPSFRIGDQTEGILIKDEVIETLFEEKYDQEDTEFTSLVEAF 163

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
               ND++++ LI ++           F  S  W    ++++  + 
Sbjct: 164 STYKNDDNLKELIINM---------YNFIMSGPWPENWLKENAEAF 200


>gi|323692610|ref|ZP_08106842.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum
           WAL-14673]
 gi|323503307|gb|EGB19137.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum
           WAL-14673]
          Length = 1222

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 33/221 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAA 74
           ++ TK ++ +     R+  VSA AGSGKT +LV+R++R++  +       LL +T TKAA
Sbjct: 3   VNWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITGDSPIDIDRLLVMTFTKAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+                A I K   + P    + +          T    ++ 
Sbjct: 63  AAEMRERI---------------QAAIEKKLEEDPGNEHLQQQAV-------TVQFAQIT 100

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TI +FC  I+++     +I   F + DE +   L  E     L  +M D+     +AF  
Sbjct: 101 TIDSFCLHILREHFDCIDIDPAFRVGDEGEMLLLRAE----VLQELMEDSYANGGEAFER 156

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            ++  +    +  I D I     +++  F  S  W  K  E
Sbjct: 157 FVDTYSIGKADGGIEDYI-----MQVFSFAQSNPWPDKWFE 192


>gi|114799862|ref|YP_760584.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC
           15444]
 gi|114740036|gb|ABI78161.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC
           15444]
          Length = 1168

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 9/188 (4%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPSTLLCLTHTKAAAAEMSHRV 82
           +P  SA+ +ANAGSGKT +L+ RV RLLL        A P ++LC+T+T+AAA EM  R+
Sbjct: 23  NPDVSAYATANAGSGKTKVLIDRVARLLLRREDGRPGADPDSILCITYTRAAANEMLTRL 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAF 139
              +  W+   D+ L   ++K++G+ P K    D+  AR L    LETPGGL+++TIHAF
Sbjct: 83  FRTLGDWAVKEDDKLREALSKLEGRAPEKYSREDLRDARRLFARALETPGGLRIETIHAF 142

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  I+++FPLEA +   FA  ++  +K L + AK   +        +EL     E +   
Sbjct: 143 CARILRRFPLEAGVVPGFAEMEDRDAKALWQAAKDRAILEAAQSAPDELALIAREAMNEG 202

Query: 200 NDEDIETL 207
               ++ L
Sbjct: 203 AASALDAL 210


>gi|295091233|emb|CBK77340.1| recombination helicase AddA, Firmicutes type [Clostridium cf.
           saccharolyticum K10]
          Length = 1273

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 34/224 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            ++ TK ++ +     R+  VSA AGSGKT +LV+R++R++     P     LL +T TK
Sbjct: 2   GVNWTKEQRQVIESRDRNLLVSAAAGSGKTAVLVERIIRMITDGERPGDIERLLVMTFTK 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA+EM  R+ +                I K   + P    + +   ++          +
Sbjct: 62  AAASEMRERIHD---------------AIEKKLKEDPGNEHLQQQAIMVQ-------YAQ 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  I+++     +I   F + DE +   L  +  +  L      ++   +   
Sbjct: 100 ITTIDSFCLHILREHFDCLDIDPAFRVGDEGEMLLLRGDVMEELLEDWYGRHDPAFENFV 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                   D  I+  I          ++  F  S  W ++ I++
Sbjct: 160 ETYASGKADGGIDDYIY---------QVYSFSQSNPWPKEWIDE 194


>gi|283795557|ref|ZP_06344710.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1]
 gi|291077226|gb|EFE14590.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1]
          Length = 1273

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 34/224 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            ++ TK ++ +     R+  VSA AGSGKT +LV+R++R++     P     LL +T TK
Sbjct: 2   GVNWTKEQRQVIESRDRNLLVSAAAGSGKTAVLVERIIRMITDGERPGDIERLLVMTFTK 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA+EM  R+ +                I K   + P    + +   ++          +
Sbjct: 62  AAASEMRERIHD---------------AIEKKLKEDPGNEHLQQQAIMVQ-------YAQ 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  I+++     +I   F + DE +   L  +  +  L      ++   +   
Sbjct: 100 ITTIDSFCLHILREHFDCLDIDPAFRVGDEGEMLLLRGDVMEELLEDWYGRHDPAFENFV 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                   D  I+  I          ++  F  S  W ++ I++
Sbjct: 160 ETYASGKADGGIDDYIY---------QVYSFSQSNPWPKEWIDE 194


>gi|295109449|emb|CBL23402.1| recombination helicase AddA, Firmicutes type [Ruminococcus obeum
           A2-162]
          Length = 1241

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 34/221 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ +Q + S   R+  VSA AGSGKT +LV+R+L  +     P     LL +T T+AAA
Sbjct: 5   WTEEQQKVISLRDRNILVSAAAGSGKTAVLVERILSKICDPKKPVDIDRLLIMTFTRAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+               SA I +     P+   + +   L+          ++ T
Sbjct: 65  GEMKERI---------------SAAIEQKLYDNPDNEHLQRQTSLIHNA-------QITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I  FC  I++ +    ++   +  A+E + K L E+  K  L       +E+    F  +
Sbjct: 103 IDGFCAYIIRNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEEAYAQKDEK----FLNL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            E   +   +  I D+I      KL     S+ +  + IE+
Sbjct: 159 AECYANGKTDDEIRDMI-----YKLYDASMSHPFPEEWIEE 194


>gi|154485117|ref|ZP_02027565.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC
           27560]
 gi|149734070|gb|EDM50189.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC
           27560]
          Length = 1220

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 34/225 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T  +Q +     R+  VSA AGSGKT +LV+R+++++    +P   + LL +T T+A
Sbjct: 1   MKWTDKQQKVIDTRDRNILVSAAAGSGKTAVLVERIIKMITDEENPTDVNQLLVVTFTRA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+EM  R+ E +                K++   PN  ++ K   L+           +
Sbjct: 61  AASEMKERIREAL---------------EKMEEDNPNDLNVQKQLSLIHNA-------NI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  +++    + ++  +F IADE + + L  +  +  L    L  ++E    F 
Sbjct: 99  STIDSFCARVVKDNFDKIDLDPNFRIADENEIEMLQSDIVEEMLEEYYLAADDE----FM 154

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           E+ E  +       I ++I     L++  F    +   K I++++
Sbjct: 155 ELAEKYSTGKTSDSIGELI-----LRMYKFASGQIEPEKWIKEAI 194


>gi|83749759|ref|ZP_00946735.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
 gi|207743470|ref|YP_002259862.1| homologous recombinational repair protein, atp-dependent exodnase
           (exonuclease v) beta subunit (contains helicase and
           exonuclease domains) [Ralstonia solanacearum IPO1609]
 gi|83723579|gb|EAP70781.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
 gi|206594867|emb|CAQ61794.1| homologous recombinational repair protein, atp-dependent exodnase
           (exonuclease v) beta subunit (contains helicase and
           exonuclease domains) [Ralstonia solanacearum IPO1609]
          Length = 1177

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+
Sbjct: 20  RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I+   +   D     E+  +   ++     ++ AR L   +LE+P  + + T H +   +
Sbjct: 80  ILAQLAGADDAAAVRELVARTVDERDAPGLVATARGLYARVLESPSRMAIDTFHGWFGGL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D  
Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQ 197

Query: 204 IETLISDIISNRTAL 218
              L+  + + R+  
Sbjct: 198 AGRLLDAMFAQRSDW 212


>gi|300704439|ref|YP_003746042.1| helicase, uvrd subfamily [Ralstonia solanacearum CFBP2957]
 gi|299072103|emb|CBJ43435.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CFBP2957]
          Length = 1177

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP RS  V A AGSGKT +LV R+LRLLLA A P+ +L +T T+ AA EM  R+L+
Sbjct: 20  RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAITFTRKAAEEMRQRLLD 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I+   +   D  +  E+  +   ++     ++ AR L   +LE+P  + + T H +   +
Sbjct: 80  ILAQLAGADDAAVVRELVARTVDERDAPGLVAAARGLYARVLESPSRMAIDTFHGWFGGL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D  
Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQ 197

Query: 204 IETLISDIISNRTAL 218
              L+  + + R+  
Sbjct: 198 AGRLLDAMFAQRSDW 212


>gi|207723138|ref|YP_002253537.1| homologous recombinational repair protein, atp-dependent exodnase
           (exonuclease v) beta subunit (contains helicase and
           exonuclease domains) [Ralstonia solanacearum MolK2]
 gi|206588331|emb|CAQ35294.1| homologous recombinational repair protein, atp-dependent exodnase
           (exonuclease v) beta subunit (contains helicase and
           exonuclease domains) [Ralstonia solanacearum MolK2]
          Length = 1177

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+
Sbjct: 20  RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I+   +   D     E+  +   ++     ++ AR L   +LE+P  + + T H +   +
Sbjct: 80  ILAQLAGADDAAAVRELVARTVDERDAPGLVATARGLYARVLESPSRMAIDTFHGWFGGL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D  
Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQ 197

Query: 204 IETLISDIISNRTAL 218
              L+  + + R+  
Sbjct: 198 AGRLLDAMFAQRSDW 212


>gi|300856480|ref|YP_003781464.1| putative ATP-dependent exonuclease [Clostridium ljungdahlii DSM
           13528]
 gi|300436595|gb|ADK16362.1| predicted ATP-dependent exonuclease [Clostridium ljungdahlii DSM
           13528]
          Length = 1240

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 35/227 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAA 74
           + T+S++     P  +  VSA AG+GKT +LV+R+++ +     +     LL +T T AA
Sbjct: 12  NWTESQREAIFTPKCNLLVSAGAGTGKTAVLVERIIQEITSIDEDVDIDKLLVVTFTNAA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R+ E I+               K+        ++ K   LL           + 
Sbjct: 72  ASEMKERIAEAIS---------------KLLESNYGSKNLQKQLTLL-------NQANII 109

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFC  +++      ++  +F I D  ++  L +      L  +  +  +     F +
Sbjct: 110 TIHAFCLKVIKSNFHLIDLDPNFRICDSTEAVLLKQ----DVLEELFDEKYDIENTEFLK 165

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +++    ++   L   ++S      L  F  S  W  K + +++ + 
Sbjct: 166 LVDGFKSKNDIKLKDMVLS------LYEFSKSNPWPEKWLRQAVENF 206


>gi|197302903|ref|ZP_03167954.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC
           29176]
 gi|197297984|gb|EDY32533.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC
           29176]
          Length = 1256

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 34/221 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK ++ +     R+  VSA AGSGKT +LV+R++  +    +P     LL +T+T+A
Sbjct: 3   VKWTKEQRQVIDLRDRNILVSAAAGSGKTAVLVERIISRITDEKNPVDVDKLLVVTYTEA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+               +A I K   + P   ++ +   L+ + +       +
Sbjct: 63  AAAEMKERI---------------AAAIEKKLEEFPGNLNLEQQASLIHSAM-------I 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H FC ++++       I   F + +E + + L ++     L      + EE ++   
Sbjct: 101 TTVHKFCLSVIRDHFHVIGIDPSFRVGEEGELRLLKQDVLDEMLEEHYAKDEEEFREFVE 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +      D+ IE LI         L+L  +  SY   R+ +
Sbjct: 161 KYGTGRTDKKIEELI---------LQLYEYSRSYPDPRQWL 192


>gi|266620646|ref|ZP_06113581.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479]
 gi|288867733|gb|EFD00032.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479]
          Length = 1244

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 34/221 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           I+ TK ++ +     R+  VSA AGSGKT +LV+R++R++    +P     LL +T TKA
Sbjct: 3   INWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITEGKNPLDIDQLLVMTFTKA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RVL                 + +   + P  S +     ++          ++
Sbjct: 63  AADEMRERVL---------------LAVDEKLKEDPENSHLQMQAAMIP-------YARI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  I+++     +I   F + DE +   L     +  L       +EE  +   
Sbjct: 101 TTIDSFCLGIIREHYNRLDIDPAFRVGDEGELLLLRGSVMEQMLEDYYEAGDEEFSRFVE 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                 +D  IE  I         + +  F  S  W  + +
Sbjct: 161 TYATGKSDRGIEDHI---------MAVYNFSGSNPWPEEWL 192


>gi|126698625|ref|YP_001087522.1| ATP-dependent nuclease subunit A [Clostridium difficile 630]
 gi|123174482|sp|Q18AN9|ADDA_CLOD6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|115250062|emb|CAJ67882.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
           [Clostridium difficile]
          Length = 1275

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     TK +  +      +  V+A AGSGKT +LV+R+++++ +  +P     LL +T 
Sbjct: 1   MSSPKWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA+EM  R+ + I                K   + P    +     LL         
Sbjct: 61  TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++      N+  +F I D+ +   L +EA +     +  + +E    
Sbjct: 99  SSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 E   D++++ +I         L +  F  +    +K +  S    
Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200


>gi|255100077|ref|ZP_05329054.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-63q42]
          Length = 1275

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     TK +  +      +  V+A AGSGKT +LV+R+++++ +  +P     LL +T 
Sbjct: 1   MSSPKWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA+EM  R+ + I                K   + P    +     LL         
Sbjct: 61  TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++      N+  +F I D+ +   L +EA +     +  + +E    
Sbjct: 99  SSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 E   D++++ +I         L +  F  +    +K +  S    
Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200


>gi|117924280|ref|YP_864897.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp.
           MC-1]
 gi|117608036|gb|ABK43491.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp.
           MC-1]
          Length = 1155

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 11/224 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             +  A DP  S  V A AGSGKT +L QR LRLL     P  +L +T T+ AAAEM  R
Sbjct: 7   QARARALDPEGSFIVQAPAGSGKTGLLTQRFLRLLAVVDKPEQILAITFTRKAAAEMRGR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++E +   +     ++  E  + Q  +  +  +++       +L  P  L V TI A   
Sbjct: 67  IVEALAEAAR---GVVPVEPFERQRYELARGALAQDHAHGWQLLHNPQRLAVMTIDALSS 123

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEIL--EI 198
            + +Q P+ +     F  ADE +   L ++A +S L + M +  +    +A + +L    
Sbjct: 124 RLTRQMPVLSGFGGSFERADEPE--PLYQQAARSCLETSMQEPADSPRHQAVWRLLQHRD 181

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYL-WRRKIIEKSLWSI 241
            + + +E L+ ++++ R     I+   +    +R+++E++LW +
Sbjct: 182 YDFQRLEQLLVEMLARRDQW--IYHLQNQDGLQREVLEQALWHL 223


>gi|309782347|ref|ZP_07677073.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA]
 gi|308918883|gb|EFP64554.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA]
          Length = 1173

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 4/215 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+
Sbjct: 20  RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I+   +   DE +  E+  +   ++   + +  AR L   +LE+P  + + T H +  ++
Sbjct: 80  ILAQLAGADDESVVRELIARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + +    ++   E + +L  EA       ++ +++ +L+ A+  + ++  D  
Sbjct: 140 LRGAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHADLRAAYESLADLVGDFQ 197

Query: 204 IETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
              L+  +   R+     +   +       +++ L
Sbjct: 198 AGRLLDAMFHQRSDW-WAYKTQAGGRPLDALDQLL 231


>gi|255305967|ref|ZP_05350139.1| ATP-dependent nuclease subunit A [Clostridium difficile ATCC 43255]
          Length = 1275

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     TK +  +      +  V+A AGSGKT +LV+R+++++ +  +P     LL +T 
Sbjct: 1   MSSPKWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA+EM  R+ + I                K   + P    +     LL         
Sbjct: 61  TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++      N+  +F I D+ +   L +EA +     +  + +E    
Sbjct: 99  SSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 E   D++++ +I         L +  F  +    +K +  S    
Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200


>gi|187928127|ref|YP_001898614.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|187725017|gb|ACD26182.1| UvrD/REP helicase [Ralstonia pickettii 12J]
          Length = 1173

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A +P RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+
Sbjct: 20  RAACEPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I+   +   DE +  E+  +   ++   + +  AR L   +LE+P  + + T H +  ++
Sbjct: 80  ILAQLAAADDEGVVRELVARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + +    ++   E + +L  EA       ++ +++ EL+ A+  + ++  D  
Sbjct: 140 LRGAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHAELRAAYETLADLVGDFQ 197

Query: 204 IETLISDIISNRTAL 218
              L+  +   R+  
Sbjct: 198 AGRLLDAMFHQRSDW 212


>gi|254974592|ref|ZP_05271064.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-66c26]
 gi|255091983|ref|ZP_05321461.1| ATP-dependent nuclease subunit A [Clostridium difficile CIP 107932]
 gi|255313717|ref|ZP_05355300.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-76w55]
 gi|255516399|ref|ZP_05384075.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-97b34]
 gi|255649498|ref|ZP_05396400.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-37x79]
 gi|260682665|ref|YP_003213950.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196]
 gi|260686264|ref|YP_003217397.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291]
 gi|260208828|emb|CBA61747.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196]
 gi|260212280|emb|CBE03030.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291]
          Length = 1275

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     TK +  +      +  V+A AGSGKT +LV+R+++++ +  +P     LL +T 
Sbjct: 1   MSSPKWTKEQLEVIGSRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA+EM  R+ + I                K   + P    +     LL         
Sbjct: 61  TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++      N+  +F I D+ +   L +EA +     +  + +E    
Sbjct: 99  SSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 E   D++++ +I         L +  F  +    +K +  S    
Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200


>gi|329113820|ref|ZP_08242591.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum
           DM001]
 gi|326696830|gb|EGE48500.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum
           DM001]
          Length = 1190

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 105/173 (60%), Gaps = 11/173 (6%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------LLANAHPSTLL 66
           ISQ  ++Q LASDP+ S +VSA+AGSGKT +L+ R+LRL          +   + P+ +L
Sbjct: 13  ISQANAQQALASDPSASVFVSASAGSGKTKLLIDRLLRLMLPRLAEDGSIQPGSSPARIL 72

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           CLT TKAAAAEMS R+ + +  W  L DE L  E+  +           +AR L   +L+
Sbjct: 73  CLTFTKAAAAEMSIRLQKRLGRWVTLLDEELDKELAGL-YVPCTDETRRRARALFAEVLD 131

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            PGG+++ TIHAFC++++++FPLEA++  HF + +E  +   ++   ++ L  
Sbjct: 132 LPGGMRIGTIHAFCQSLLRRFPLEASMNPHFTVMEETDASLALQSCVEAILGQ 184


>gi|300691831|ref|YP_003752826.1| helicase, uvrD subfamily [Ralstonia solanacearum PSI07]
 gi|299078891|emb|CBJ51552.1| putative helicase, uvrD subfamily [Ralstonia solanacearum PSI07]
          Length = 1178

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+
Sbjct: 20  RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I+   +   D     E+  +   ++     ++ AR L   +LE+P  + + T H +   +
Sbjct: 80  ILAQLAGADDAAAVRELVARTVDEREALGLVAVARGLYARVLESPSRMAIDTFHGWFGGL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D  
Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDALVDLVGDFQ 197

Query: 204 IETLISDIISNRTAL 218
              L+  + + R+  
Sbjct: 198 AGRLLDAMFAQRSDW 212


>gi|302385434|ref|YP_003821256.1| recombination helicase AddA [Clostridium saccharolyticum WM1]
 gi|302196062|gb|ADL03633.1| recombination helicase AddA [Clostridium saccharolyticum WM1]
          Length = 1229

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 34/222 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           I  T+ ++ +     R+  VSA AGSGKT +LV+R++R++     P     LL +T TKA
Sbjct: 3   ICWTEEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITEGESPLRIDQLLVMTFTKA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RVL+ +                +   + P+ + +     ++          ++
Sbjct: 63  AADEMRERVLKAV---------------DEKLVENPDSAHLQMQAAMIP-------YAQI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  +++    + +I   F + DE +   L  +  K  L       +   +K   
Sbjct: 101 TTIDSFCLGLIRDHYNKLDIDPAFRVGDEGELLLLRADVMKEMLEEHYEKADPLFEKFVE 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                 +D+ IE  I         +++  F  S  W  + ++
Sbjct: 161 TYATGKSDKGIEDYI---------MQVYTFSQSNPWPAEWLD 193


>gi|260589313|ref|ZP_05855226.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583]
 gi|260540394|gb|EEX20963.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583]
          Length = 1223

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 34/222 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +S T+ +Q +      +  VSA AGSGKT +LV+R+++ +    +P     LL +T T+
Sbjct: 2   GVSWTEEQQKVIDTRNCNILVSAAAGSGKTAVLVERIIQRITDKNNPVDIDELLIVTFTR 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+ +                I K     P    + +   L+   L       
Sbjct: 62  AAAGEMKERIRQ---------------AIEKKLEANPEDEHLQRQSTLVHHAL------- 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  I++ +    ++   F + DE + + L  +   + L     +         
Sbjct: 100 ITTIDSFCSYIVKNYFHLIDLDPSFRMGDEGEMRLLQADVADAVLEEAYTEEAPSFLAFS 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                   D+ I  +I         +KL  F  SY +  + +
Sbjct: 160 DGFAGGKTDKKIPEMI---------IKLYSFSMSYPYPEEWL 192


>gi|302670100|ref|YP_003830060.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus
           B316]
 gi|302394573|gb|ADL33478.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus
           B316]
          Length = 1317

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 27/220 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  TK +Q +      +  VSA AGSGKT +LV+R++++++       LL +T TKAAAA
Sbjct: 3   VEFTKEQQAVIDARDCNILVSAAAGSGKTAVLVERIIQMIMGGVDIDHLLVVTFTKAAAA 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +M  ++               +  I     ++P+   + +   L+          ++ TI
Sbjct: 63  QMKEKI---------------TIAIQNKLVEEPDNKHLQRQETLIHNA-------QITTI 100

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            +FC+ +++       I   F + D+ + + L E+  +  L        +     F   +
Sbjct: 101 DSFCQYVLRNNFNVIGIDPSFRVGDDGELRLLKEDVMQDMLEEEYAKCKDGENSDFLFCM 160

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           E  +    +  + + IS     +L  F  S  W    I +
Sbjct: 161 EYFSTGSSDKKVEEYIS-----ELYKFAMSMPWPEDWIRE 195


>gi|241662730|ref|YP_002981090.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240864757|gb|ACS62418.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 1173

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+
Sbjct: 20  RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I+   +   DE +  E+  +   ++   + +  AR L   +LE+P  + + T H +  ++
Sbjct: 80  ILAQLAGADDEGVVRELIARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + +    ++   E + +L  EA       ++ +++ +L+ A+  + ++  D  
Sbjct: 140 LRGAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHADLRAAYESLADLVGDFQ 197

Query: 204 IETLISDIISNRTAL 218
              L+  +   R+  
Sbjct: 198 AGRLLDAMFHQRSDW 212


>gi|150014906|ref|YP_001307160.1| recombination helicase AddA [Clostridium beijerinckii NCIMB 8052]
 gi|251764509|sp|A6LPC4|ADDA_CLOB8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|149901371|gb|ABR32204.1| Recombination helicase AddA [Clostridium beijerinckii NCIMB 8052]
          Length = 1245

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV+R++R++    +P     LL +T T AAA
Sbjct: 6   WTDEQLSAIETRNCNLLVAAAAGSGKTAVLVERIIRIITNEENPVDIDKLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + I+               K     P   ++ +   LL           + T
Sbjct: 66  AEMRERIADAIS---------------KELENNPRSKNLQRQLTLL-------NRANITT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++      ++   F I D+ +   +  E  +        + +          
Sbjct: 104 MHSFCLDVIKNNYHRIDLDPSFRIGDQTEGILIKSEVIEELFEDKYEEEDIGFTNLVEIF 163

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
               ND +++ L+ D         L  F  S  W  K +  S  + 
Sbjct: 164 SSYKNDNNLKNLVLD---------LYNFTMSGPWPEKWLINSAEAF 200


>gi|153812830|ref|ZP_01965498.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174]
 gi|149831042|gb|EDM86131.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174]
          Length = 1233

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            ++ T+ +Q + S   R+  VSA AGSGKT +LVQR+L  ++    P     LL +T T+
Sbjct: 2   GVTWTEEQQKVISLRDRNILVSAAAGSGKTAVLVQRILSKIMDTERPVDIDRLLIMTFTR 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+               SA I +I    P+   + +   L+          +
Sbjct: 62  AAAGEMKERI---------------SAAIDQILYDNPDNEHLQRQASLIHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI  FC  I++ +    ++   +  A+E + K L E+  K  L +      E+     
Sbjct: 100 ITTIDGFCAYIIRNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEAAYARKGEKFLSLV 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                   D++I  +I          KL     S+ +  + IE+ L
Sbjct: 160 ECYATGKTDDEIRDMIY---------KLYDASMSHPFPEEWIEECL 196


>gi|118444179|ref|YP_877319.1| ATP-dependent nuclease subunit A [Clostridium novyi NT]
 gi|251764519|sp|A0PY67|ADDA_CLONN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|118134635|gb|ABK61679.1| ATP-dependent nuclease subunit A [Clostridium novyi NT]
          Length = 1236

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 32/231 (13%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +  +  TK +Q        +  VSA AGSGKT +LV+R+++++    +P     LL +T 
Sbjct: 1   MGEVKWTKEQQQAIDVHGCNLLVSAAAGSGKTAVLVERIIKMITDIKNPVDIDRLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA+EM  R+ + I                K   K P    + +   LL         
Sbjct: 61  TNAAASEMKERIGKAIG---------------KELTKHPKSKQLQRQLTLL-------NR 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC   ++      ++  +F I DE ++  L  E  +     +    N    +
Sbjct: 99  ASITTIHSFCLETIRNNFHYIDLDPNFRIGDETETVLLKGEIIEGIFEDLYEPEN--CTQ 156

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            F  ++E  +    +  + +I+     L L  F  S    +K ++      
Sbjct: 157 EFLNLVEFYSSNKDDVALQNIV-----LNLYDFVMSSKNPKKQLQDMAEQF 202


>gi|254520364|ref|ZP_05132420.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA]
 gi|226914113|gb|EEH99314.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA]
          Length = 1251

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 34/219 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ +    +    +  V+A AGSGKT +LV+R++R++    +P     LL +T T AAA
Sbjct: 6   WTEDQLKAITTRGCNLLVAAAAGSGKTAVLVERIIRIITNENNPVDIDRLLVVTFTSAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+               +A I++     PN   + +   LL           + T
Sbjct: 66  AEMRERI---------------AAAISRSLEANPNSKVLQRQLTLL-------SRANITT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++ +    ++   F IADE ++  L  E             N      F  +
Sbjct: 104 MHSFCLDVIKNYYHVIDLDPTFRIADETENTLLKLEVINDMFEDYYESEN----IGFRNL 159

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +E  +    +  + DII     L L  F  S  W  K +
Sbjct: 160 IEAYSGSRDDQRLKDII-----LDLYRFSMSGPWPDKWL 193


>gi|114328674|ref|YP_745831.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316848|gb|ABI62908.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis
           CGDNIH1]
          Length = 1159

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 106/170 (62%), Gaps = 1/170 (0%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S       + +  Q  ASDP  SA+VSA+AGSGKT +L  R+LRL+L+ AHP  + CLT
Sbjct: 1   MSAAFSPRDEAERNQRDASDPIVSAFVSASAGSGKTKLLTDRLLRLMLSGAHPGRIQCLT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            TKA AAEM+ R+   + AW  +S +    +        P+ +   +AR L   +L+ PG
Sbjct: 61  FTKAGAAEMAIRLRSRLGAWVTMS-DAALDQALAALAFTPDDAARLRARALFAQVLDLPG 119

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           G++++TIHAFC++++++FPLEA ++ HF + +  + +   +EA+++ LA+
Sbjct: 120 GMRIETIHAFCQSLLRRFPLEAALSPHFKMIEPAEQEVTRQEAQETMLAA 169


>gi|188589987|ref|YP_001919480.1| recombination helicase AddA [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251764510|sp|B2UX57|ADDA_CLOBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|188500268|gb|ACD53404.1| ATP-dependent nuclease subunit A [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 1244

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T+ +    +    +  V+A AGSGKT +LV+R+++++    +P     LL +T 
Sbjct: 1   MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+               +  I+K   + P   ++ K   LL         
Sbjct: 61  TSAAAAEMRERI---------------ANAISKKLDETPTSKNLQKQLTLL-------NR 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++    + ++   F I D+ +   L  E           + N+E  K
Sbjct: 99  SNIMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEGILLKMEIIDELFDDKYDEENQEFIK 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                    +D  ++ L+         L L  F  +  W +K ++ +    
Sbjct: 159 FIEAFSSYKSDNALKELV---------LSLYNFIMAGPWPKKWLKAASEDF 200


>gi|255655059|ref|ZP_05400468.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-23m63]
 gi|296451046|ref|ZP_06892788.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08]
 gi|296880601|ref|ZP_06904563.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07]
 gi|296260053|gb|EFH06906.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08]
 gi|296428555|gb|EFH14440.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07]
          Length = 1275

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 34/231 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     TK +  +      +  V+A AGSGKT +LV+R+++++ +  +P     LL +T 
Sbjct: 1   MSSPKWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA+EM  R+ + I                K   + P    +     LL         
Sbjct: 61  TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++      ++  +F I D+ +   L +EA +     +  + +E    
Sbjct: 99  SSITTIHSFCLDVIKSNFHRISLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 E   D++++ +I         L +  F  +    +K +  S    
Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200


>gi|251778187|ref|ZP_04821107.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082502|gb|EES48392.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 1244

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T+ +    +    +  V+A AGSGKT +LV+R+++++    +P     LL +T 
Sbjct: 1   MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+               +  I+K   + P   ++ K   LL         
Sbjct: 61  TSAAAAEMRERI---------------ANAISKKLDETPMSKNLQKQLTLL-------NR 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++    + ++   F I D+ +   L  E           + N+E  K
Sbjct: 99  SNIMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEGILLKMEIIDELFDDKYDEENQEFIK 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                    +D  ++ L+         L L  F  +  W +K ++ +    
Sbjct: 159 FIEAFSSYKSDNALKELV---------LSLYNFIMAGPWPKKWLKAASEDF 200


>gi|160872666|ref|ZP_02062798.1| UvrD/REP helicase [Rickettsiella grylli]
 gi|159121465|gb|EDP46803.1| UvrD/REP helicase [Rickettsiella grylli]
          Length = 1135

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 9/231 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           T +L++     Q  A DP  S  V A AGSGKT +LV+R L LL    +P  ++ +T T+
Sbjct: 4   TFELLADALERQR-ALDPKTSFIVQAPAGSGKTELLVRRYLTLLARVPYPEAIIAITFTR 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R++  +T     +  I + +    +     +  + + +     +L  P  L+
Sbjct: 63  KAANEMRLRIMTALTVAHEKN--ITAVQDKDKERHFLAQKALLQNKTFEWNLLSHPNRLR 120

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC+++ +Q PL+A ++  +   D  +   L   A    L  +  D       A 
Sbjct: 121 ILTIDSFCQSLTRQMPLQAGLSEQWTPTDNPEW--LYRLAIHEFLNPL--DEKVTWFSAL 176

Query: 193 YEIL-EISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            ++L  + ND + +E L+  +++ R          S    RK +E+SLW +
Sbjct: 177 NQLLIHLDNDFQRLENLLVPLLARREQWLDYLLLQSPDDLRKTLEQSLWDL 227


>gi|294011636|ref|YP_003545096.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S]
 gi|292674966|dbj|BAI96484.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S]
          Length = 1147

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             W+SA+AG+GKTH+L  RV RLLL    P  +LCLT TKA AAEM+ RV + + AW  +
Sbjct: 28  HVWLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRVHDRLAAWVLM 87

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEA 151
            +  L  ++  + G++      ++AR L   +LE T GGL++QTIH FC+ ++  FPLEA
Sbjct: 88  DEADLFHDLEAL-GEESGPEARNRARRLFAEVLESTGGGLRIQTIHGFCQQLLTAFPLEA 146

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++   F   D+ +   L  +            +++ L  A   +     +   E  +   
Sbjct: 147 DLPPGFRPLDQREQATLARQTLADMAVVAQEQHDKALMDALQALSLRMGEGGAENFLLRC 206

Query: 212 ISNRTALKLIF 222
            +   AL+ + 
Sbjct: 207 AARLDALEALP 217


>gi|17545909|ref|NP_519311.1| hypothetical protein RSc1190 [Ralstonia solanacearum GMI1000]
 gi|17428204|emb|CAD14892.1| probable homologous recombinational repair protein, atp-dependent
           exodnase (exonuclease v) beta subunit (contains helicase
           and exonuclease domains) [Ralstonia solanacearum
           GMI1000]
          Length = 1177

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 100/195 (51%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP RS  V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM  R+L+
Sbjct: 20  RAACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            +   +   D  +  E+  +   ++     ++ AR L   +LE+P  + + T H +   +
Sbjct: 80  SLAQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESPSRMAIDTFHGWFGGL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D  
Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQ 197

Query: 204 IETLISDIISNRTAL 218
              L+  + + R+  
Sbjct: 198 AGRLLDAMFAQRSDW 212


>gi|168185692|ref|ZP_02620327.1| recombination helicase AddA [Clostridium botulinum C str. Eklund]
 gi|169296499|gb|EDS78632.1| recombination helicase AddA [Clostridium botulinum C str. Eklund]
          Length = 1236

 Score =  175 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 32/231 (13%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +  +  TK +Q        +  VSA AGSGKT +LV+R+++++    +P     LL +T 
Sbjct: 1   MGEVRWTKEQQQAIDIHGCNLLVSAAAGSGKTAVLVERIIKMITDFKNPVDIDRLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA+EM  R+ + I                K   K P    + +   LL         
Sbjct: 61  TNAAASEMKERIGKAIG---------------KELTKHPKSKQLQRQLTLL-------NR 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T+H+FC   ++      ++  +F I DE ++  L  E  +     +    N    +
Sbjct: 99  ASITTMHSFCLETIRNNFHYIDLDPNFRIGDETETVLLKGEIIEEIFEDLYEPEN--CTQ 156

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            F  ++E  +    +T + +I+     L L  F  S    ++ ++      
Sbjct: 157 EFLNLVEFYSSNRDDTALQNIV-----LNLYNFVMSSKNPKEQLQDMAEEF 202


>gi|255282638|ref|ZP_05347193.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM
           14469]
 gi|255266931|gb|EET60136.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM
           14469]
          Length = 1237

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 26/224 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +  T+ ++ +         VSA AGSGKT +LV+R+L +L    HP     LL +T T 
Sbjct: 2   GVKWTEDQRQVIDARGCDLLVSAAAGSGKTAVLVERILSMLTDKEHPRDIDRLLIVTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+   I                KI+  + +  +  +    L   +      +
Sbjct: 62  AAAGEMKDRIRVAIE--------------QKIEDCRADGGEEERLLEHLQRQVSLLSNAQ 107

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC+ +++      ++     +ADE + K L  +     +     +N EE +   
Sbjct: 108 ITTIHSFCQYVIRNHFHTIDLDPGLHVADEGEQKLLQSDVMDKLVEEAYAENTEEFRYMA 167

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             +    +D  +           TAL L  F  S+ +  + +++
Sbjct: 168 ECLAPGRDDAALAE---------TALSLYHFSRSFPFPEEWLQE 202


>gi|85708411|ref|ZP_01039477.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1]
 gi|85689945|gb|EAQ29948.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1]
          Length = 369

 Score =  174 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 3/203 (1%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
                QL A++P  + W+SA+AG+GKT +L  RVLRLLL     PS +LCLT TKA AAE
Sbjct: 7   PLADNQLGAANPRDNVWLSASAGTGKTQVLSARVLRLLLTPGVEPSQILCLTFTKAGAAE 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTI 136
           M++R+  ++  W  L    L+ E+ K  G   +   +++AR L  ++L+ PGG L++ TI
Sbjct: 67  MANRINAVLARWVRLEAGALAREL-KHLGADFDPETLARARTLFASVLDCPGGGLRIDTI 125

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAF + ++  FP EA++T      ++ + + L  E     L+      ++    A     
Sbjct: 126 HAFSQWLLGNFPEEADLTPGARPMEDRERELLAREVLADMLSEAEAKGDQSFTDAVSHFT 185

Query: 197 EISNDEDIETLISDIISNRTALK 219
           +  + + +   +    S     +
Sbjct: 186 KTKDPDALRGWLMRCASAADLWE 208


>gi|291542614|emb|CBL15724.1| recombination helicase AddA, Firmicutes type [Ruminococcus bromii
           L2-63]
          Length = 1186

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 34/228 (14%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  ++        S  VSA AGSGKT +LV+RV++L+    +P     LL +T T+AA
Sbjct: 4   NWTPQQKNAIYATDGSVLVSAAAGSGKTAVLVERVIKLITREKNPLDVDRLLIVTFTRAA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+                A + K+    P  + +   R LL +         + 
Sbjct: 64  AAEMRERI---------------QAAVNKLLEDDPYNAHLLAQRQLLYSA-------NIS 101

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TI +FC  I++++    ++   F IADE + + L +EA  +T  S     ++     FY 
Sbjct: 102 TIDSFCGDIVREYFHTLDVARDFRIADEGELEILRQEALDNTFESFYDSEDD----CFYS 157

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           +L++   +  +  + +     T LK+  F  +  +  K ++  L + +
Sbjct: 158 LLDLFKGKQGDQKLRE-----TVLKISEFLTTQPFPDKWLDDMLENYS 200


>gi|23098637|ref|NP_692103.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis
           HTE831]
 gi|81746699|sp|Q8ERW5|ADDA_OCEIH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|22776864|dbj|BAC13138.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis
           HTE831]
          Length = 1243

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 37/227 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTK 72
           +++ TK ++           V+A AGSGKT +LV+R+++ LLA  +P+ +   L +T T 
Sbjct: 1   MVNWTKEQEEAIYTSGSDILVAAAAGSGKTAVLVERIIQKLLAEHNPTNIDALLVVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM +RV                A + +     P+   + K   LL           
Sbjct: 61  AAAQEMRNRV---------------GAALEQALAANPSSIHLKKQLSLLQRA-------S 98

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T+H+FC  I+++     +I   F IAD+ +   L +E     L     D+N      F
Sbjct: 99  ISTLHSFCLDIVKKNAYILDIDPSFRIADDMEMDLLKQEVLDDLLEEWYGDSNPNQDSFF 158

Query: 193 Y---EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                     +D ++E LI  + +         F     W  + ++K
Sbjct: 159 EVVNRFTSDRSDAEMEELIRSLHT---------FAMQSPWPNQWLDK 196


>gi|299067242|emb|CBJ38439.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CMR15]
          Length = 1177

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 3/194 (1%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            A DP RS  V A AGSGKT +LV R+LRLLLA A P+ +L +T T+ AA EM  R+L+I
Sbjct: 21  AACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAITFTRKAAEEMRQRLLDI 80

Query: 86  ITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           +   +   D  +  E+  +   ++     ++ AR L   +LE+P  + + T H +   ++
Sbjct: 81  LAQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESPSRMAIDTFHGWFGGLL 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           +  PL + +    ++   E + +L  EA       ++ + + EL+ A+  ++++  D   
Sbjct: 141 RGAPLSSGVPQGASL--REDAGRLRREAWAPFWRGLLAEEHAELRAAYDTLVDLVGDFQA 198

Query: 205 ETLISDIISNRTAL 218
             L+  + + R+  
Sbjct: 199 GRLLDAMFAQRSDW 212


>gi|326387825|ref|ZP_08209431.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207871|gb|EGD58682.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 1159

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 3/210 (1%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82
           Q+ A DP R+ W+SA+AG+GKT +L  RVLRLLL  +  P  +LCLT TKA AAEM+ R+
Sbjct: 18  QMHAVDPDRTVWLSASAGTGKTQVLTSRVLRLLLQPDVEPDQILCLTFTKAGAAEMATRI 77

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCE 141
            E +  W  + D  L+  +  I G   +   + +AR     +L+ P GGL+++TIHAF +
Sbjct: 78  GEKLADWVRMDDVTLATHLQAI-GAPFDPVALDRARSRFAAVLDCPGGGLRIETIHAFSQ 136

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++  FP EA +       ++     L  E     L       +E    A   +     +
Sbjct: 137 WLLSAFPEEAGLRPGARAMEDRDRDLLFREVLIDLLVRAESAGDEAFIDALAALSLRMGE 196

Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRR 231
            D+   +    S +        +   L  R
Sbjct: 197 SDLAGFLLRCASAQDLWTGPGGWQPPLRPR 226


>gi|187935208|ref|YP_001884280.1| recombination helicase AddA [Clostridium botulinum B str. Eklund
           17B]
 gi|251764511|sp|B2THC8|ADDA_CLOBB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|187723361|gb|ACD24582.1| ATP-dependent nuclease subunit A [Clostridium botulinum B str.
           Eklund 17B]
          Length = 1243

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 34/227 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T+ +    +    +  V+A AGSGKT +LV+R+++++    +P     LL +T 
Sbjct: 1   MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+               +  I+K   + P   ++ K   LL         
Sbjct: 61  TSAAAAEMRERI---------------ANAISKKLDETPTSKNLQKQLTLL-------NR 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++    + ++   F I D+ +   L  E           + N+E  K
Sbjct: 99  SNIMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEGILLKMEIIDELFDDKYDEENQEFIK 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                    +D  ++ L+         L L  F  +  W +K ++ +
Sbjct: 159 FIEAFSSYKSDNALKELV---------LSLYNFTMAGPWPKKWLKDA 196


>gi|160934431|ref|ZP_02081818.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753]
 gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753]
          Length = 1179

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 92/222 (41%), Gaps = 34/222 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T+S++   S    S  VSA AGSGKT +LVQRV+  L     P     LL +T T AA
Sbjct: 5   NWTESQRWAISARNGSLLVSAAAGSGKTAVLVQRVIERLTDPERPCDADRLLIVTFTNAA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+               SA I ++    P  + + + + LL           + 
Sbjct: 65  AAEMKERI---------------SAAIGELLQADPANAQLQRQQILL-------NRAHIS 102

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+FC  ++++   + +I+  F I+D  +   L +EA    +  +    +   +     
Sbjct: 103 TIHSFCNELVRENFYKLDISPDFRISDSAEMTLLRQEAMDEVMEELYAKEDGSFQGLSDA 162

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                +D  +   +           L  F  S+ +  + +++
Sbjct: 163 FSFGRDDRRLMETVE---------TLYDFIRSHPFPERWLDE 195


>gi|210623665|ref|ZP_03293974.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275]
 gi|210153430|gb|EEA84436.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275]
          Length = 1256

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 35/232 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTH 70
           +     TK ++ +      +  VSA AGSGKT +LV+R++ ++L           L +T 
Sbjct: 1   MGSTKWTKEQREVIDHRDGNLLVSAAAGSGKTAVLVERIISMILDTEEKVDIDKFLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA+EM  R+ + I+                   K P+   + K        +     
Sbjct: 61  TNAAASEMRERIGDAISTA---------------LEKDPSNEHLQKQ-------ILFLNK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-----DNN 185
             + TIH+FC  +++       +  +F I D  + + + +EA       +       D N
Sbjct: 99  ANITTIHSFCLDVIKNNIHLITLDPNFRIGDTTECQLIAQEAIDEVFEELYEQGYLGDEN 158

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            E  K F ++++   + + +  +  +I     + +  F  S+    K + +S
Sbjct: 159 SEKGKRFLKLIDSFAERNGDNQVQSLI-----MSIYNFAMSFPNPEKWLNES 205


>gi|227529820|ref|ZP_03959869.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350304|gb|EEJ40595.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis
           ATCC 49540]
          Length = 1286

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 24/222 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T S+Q    D  ++  VSA+AGSGKT +LV+R ++L+    H   +L +T T AAA  
Sbjct: 5   NPTPSQQRAIDDRGKNILVSASAGSGKTAVLVERAIKLIREGIHVDRMLMVTFTDAAAKS 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  ++ E +                    +  + ++  + +  +I  +       + TIH
Sbjct: 65  MRDKIREALQEAVR---------------QPVHNAEEQQQQRRMINEINRLATADISTIH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIM---LDNNEELKKAFY 193
           AFC  +++++    ++   F +  D+ +   L EE  +     +    L+   + + +F 
Sbjct: 110 AFCLKLIKRYYYLIHLDPQFRLLTDDTERLLLQEEIWQQVSEKLYESPLEQANDERASFS 169

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           E++   +++     + D++     LKL     +       ++
Sbjct: 170 ELVTNFSNDRDAQGLDDLV-----LKLYETANAQPEPESWLQ 206


>gi|103485653|ref|YP_615214.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
 gi|98975730|gb|ABF51881.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
          Length = 1166

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 8/171 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++     Q  A+DP R  W+ A+AG+GKT +L  RVLRLLL    P  +LC+T TKA AA
Sbjct: 7   LATLDPHQRAAADPARHVWLGASAGTGKTQVLSARVLRLLLDGVSPEAILCITFTKAGAA 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-------MSKARHLLITILETPG 129
           EM+HR+ + +  W  + D  L  ++  +                +++AR L  T++++PG
Sbjct: 67  EMAHRIHQRLAKWVRMEDGELRLDLQALGIDLELHGHDDGVPALIARARALFATVIDSPG 126

Query: 130 GL-KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           G  +VQTIH+FC+ ++  FPLEA +   F   +E+++  L        L +
Sbjct: 127 GAIRVQTIHSFCQTLLASFPLEAKLLPGFRAIEEDEAGALQRRVLGDLLDA 177


>gi|307292809|ref|ZP_07572655.1| double-strand break repair helicase AddA [Sphingobium
           chlorophenolicum L-1]
 gi|306880875|gb|EFN12091.1| double-strand break repair helicase AddA [Sphingobium
           chlorophenolicum L-1]
          Length = 1147

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             W+SA+AG+GKTH+L  RV RLLL    P  +LCLT TKA AAEM+ RV + + AW  +
Sbjct: 28  HVWLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRVHDRLAAWVQM 87

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEA 151
           S   L+A++  + G+   +     AR L   +LE T GGL++QTIH FC+ ++  FPLEA
Sbjct: 88  SGPALAADLMAL-GEDHGQEMQDVARRLFAEVLESTGGGLRIQTIHGFCQQLLTAFPLEA 146

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++   F   D+ +   L  +             +E L +A   +     +   E  +   
Sbjct: 147 DLPPGFRPLDQREQAGLARQTLADMAVVAQQQGDEALIEALQALSLRMGEGGAENFLLRC 206

Query: 212 ISNRTALKLIF 222
            +   AL+ + 
Sbjct: 207 AARLDALEALP 217


>gi|210617937|ref|ZP_03291823.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787]
 gi|210149076|gb|EEA80085.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787]
          Length = 1217

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 34/224 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            ++ T  ++ +     R+  VSA AGSGKT +LV+R++  L  + +P     LL +T+T+
Sbjct: 2   GVTFTPEQKQVIDLRDRNILVSAAAGSGKTAVLVERIITRLTKDQNPIDVDQLLIVTYTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA+EM  R+                  I K   + P+   + +   L+ +        +
Sbjct: 62  AAASEMKERIR---------------TAIEKALEENPDNVHLQRQATLIHSA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V TIH+FC ++++ +    ++   F IA+E + K L  +  +  L     + ++  ++  
Sbjct: 100 VTTIHSFCLSVIRDYFHTIDLDPGFRIAEEGELKLLKHDVMEELLERYYEEGSQTFQEFV 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                  +D+ +E LI         L+L  F  SY    K +++
Sbjct: 160 ECFASGRDDKKLEELI---------LQLYEFSRSYPNPGKWLQE 194


>gi|317470347|ref|ZP_07929738.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA]
 gi|316902151|gb|EFV24074.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA]
          Length = 1186

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 34/224 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK +Q +  +   S  VSA AGSGKT +LV+R++  + +   P     LL +T+T A
Sbjct: 1   MPWTKEQQQVIEERGCSLLVSAAAGSGKTAVLVERIIEKISSKEEPVDVDRLLVVTYTHA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+                  I K   + P    + +   L+          ++
Sbjct: 61  AANEMKERIRR---------------AIEKKVEEDPENEHLIRQLSLIHKA-------QI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC  +++ +  + ++  +FAI D+ Q   +  E     L     + ++   +   
Sbjct: 99  TTIHSFCLNLIRDYYYKLDLDPNFAIGDQGQMDLMKLEVLDDVLEEAYAEQSDAFVEFIE 158

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
             +   ND+ I   +         L L     S++     + ++
Sbjct: 159 SYIPGKNDDRIRDYV---------LGLYESSRSHIDPLLWLSQA 193


>gi|311067549|ref|YP_003972472.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus
           1942]
 gi|310868066|gb|ADP31541.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus
           1942]
          Length = 1234

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 34/224 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        +   V+A AGSGKT +LV+R++R + A  +P     +L +T T A+
Sbjct: 10  TWTDDQWNAIVSSGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRVLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K   K+P    + +   LL           + 
Sbjct: 70  AAEMKHRIAEAL---------------EKELVKRPGSLHIRRQLSLL-------NRASIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    ++   F IAD+ + + L +E     L  +  D   + +KAF+E
Sbjct: 108 TLHSFCLQVLRKYYYLIDLDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFE 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++    +  +  +  ++      ++  F  S+   +  +E  +
Sbjct: 164 LVDRYTTDRHDLDLQHLVK-----RVYEFSRSHPDPKTWLEGFV 202


>gi|167748814|ref|ZP_02420941.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662]
 gi|167651784|gb|EDR95913.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662]
          Length = 1186

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 34/224 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK +Q +  +   S  VSA AGSGKT +LV+R++  + +   P     LL +T+T A
Sbjct: 1   MPWTKEQQQVIEERGCSLLVSAAAGSGKTAVLVERIIEKISSKEEPVDVDRLLVVTYTHA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+                  I K   + P    + +   L+          ++
Sbjct: 61  AANEMKERIRR---------------AIEKKVEEDPENEHLIRQLSLIHKA-------QI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC  +++ +  + ++  +FAI D+ Q   +  E     L     + ++   +   
Sbjct: 99  TTIHSFCLNLIRDYYYKLDLDPNFAIGDQGQMDLMKLEVLDDVLEEAYAEQSDAFVEFIE 158

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
             +   ND+ I   +         L L     S++     + ++
Sbjct: 159 SYIPGKNDDRIRDYV---------LGLYESSRSHIDPLLWLSQA 193


>gi|311029443|ref|ZP_07707533.1| ATP-dependent nuclease, subunit A [Bacillus sp. m3-13]
          Length = 1255

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 31/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T  +        R   V+A AGSGKT +LV+R++  ++  +     LL +T T A+AAE
Sbjct: 14  WTDDQWKAIVASGRDILVAAAAGSGKTAVLVERMIHKIVEEHVDVDRLLVVTFTNASAAE 73

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HR+ E +                K   KKP    + +   LL           + TIH
Sbjct: 74  MRHRIGEAL---------------EKQLEKKPASLHLRRQLSLL-------NRASISTIH 111

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++++    +I   F IAD  + + + EE  +          + +L   F+E+++
Sbjct: 112 SFCLEVVRKYYYLIDIDPSFRIADTTEIQLMQEEVLEGVFEEEYGKEDNDL---FFELVD 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              ++  +  + +++     L L  F  +     K +++
Sbjct: 169 RYTNDRSDGALQNLV-----LDLHEFSRANPNPDKWLDE 202


>gi|219853971|ref|YP_002471093.1| hypothetical protein CKR_0628 [Clostridium kluyveri NBRC 12016]
 gi|251764517|sp|B9DZK4|ADDA_CLOK1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|219567695|dbj|BAH05679.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1238

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAA 75
            T++++     P  +  V+A AG+GKT +LV+R+L+ ++          LL +T T AAA
Sbjct: 8   WTETQKSAIFTPNCNLLVAAGAGTGKTAVLVERILQKVINDSEEVDIDKLLVVTFTNAAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  RV E ++               K+        ++ +   LL           + T
Sbjct: 68  SEMKERVGEALS---------------KLLELNCTSKNLQRQLALLNQS-------NIMT 105

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++      ++  +F I D+ +SK L ++A          + N      F  +
Sbjct: 106 IHSFCLKVIKNNFHRIDLDPNFRICDDTESKLLKQDALLELFEEKYEEENL----GFLNL 161

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            +    ++   L  DI+     L L  F     W ++ ++  L   
Sbjct: 162 ADGYGGKNDSKL-QDIV-----LSLYEFSQGSPWPKRWLQDVLKDF 201


>gi|153953342|ref|YP_001394107.1| ATP-dependent exonuclease [Clostridium kluyveri DSM 555]
 gi|251764518|sp|A5N628|ADDA_CLOK5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|146346223|gb|EDK32759.1| Predicted ATP-dependent exonuclease [Clostridium kluyveri DSM 555]
          Length = 1235

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAA 75
            T++++     P  +  V+A AG+GKT +LV+R+L+ ++          LL +T T AAA
Sbjct: 5   WTETQKSAIFTPNCNLLVAAGAGTGKTAVLVERILQKVINDSEEVDIDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  RV E ++               K+        ++ +   LL           + T
Sbjct: 65  SEMKERVGEALS---------------KLLELNCTSKNLQRQLALLNQS-------NIMT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++      ++  +F I D+ +SK L ++A          + N      F  +
Sbjct: 103 IHSFCLKVIKNNFHRIDLDPNFRICDDTESKLLKQDALLELFEEKYEEENL----GFLNL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            +    ++   L  DI+     L L  F     W ++ ++  L   
Sbjct: 159 ADGYGGKNDSKL-QDIV-----LSLYEFSQGSPWPKRWLQDVLKDF 198


>gi|291523612|emb|CBK81905.1| recombination helicase AddA, Firmicutes type [Coprococcus catus
           GD/7]
          Length = 1228

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 34/225 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           I  ++ +Q +      S  VSA AGSGKT +LV+R++RLL    HP     LL +T T A
Sbjct: 3   IQWSEKQQAVIDARGCSVLVSAAAGSGKTAVLVERLIRLLTDEKHPVDIERLLVVTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+   +                +   ++P+ +   + + LL          ++
Sbjct: 63  AAAEMRERIGRGL---------------DQKLLEEPDHTAWIRQKLLLPCA-------QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+ C   +++     ++   F + DE + K L  +  +  + +     N   +    
Sbjct: 101 STIHSLCLKTIREHFEVLDLDPSFRLGDEAELKLLKSDVAEDVMETYYASENRAFRAFVD 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                  D+ I  +I         + L  +   + W    ++  L
Sbjct: 161 RYANGKTDQGIAEMI---------IALYDYSRGFPWPEYWLKHCL 196


>gi|296132525|ref|YP_003639772.1| recombination helicase AddA [Thermincola sp. JR]
 gi|296031103|gb|ADG81871.1| recombination helicase AddA [Thermincola potens JR]
          Length = 1279

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 34/226 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T  +    +    +  VSA AG+GKT +LV+R++R ++    P     LL +T 
Sbjct: 1   MGGTKWTNEQITAITTRNCNLLVSAAAGAGKTAVLVERIIRRIVDPIDPVDVDRLLIVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TKAAA EM  R+                  I +     P    +++   LL         
Sbjct: 61  TKAAANEMRERI---------------GLAIARELDNNPASLHLNRQATLLSRAY----- 100

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T+H+FC  +++Q+     +   F +AD+ ++  ++ E  +     +    +EE   
Sbjct: 101 --ITTLHSFCLDVVRQYFYRLELDPAFRVADDAEAALMLMETLEDLFEELYSSGDEEFLA 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                    +D  +  LI D+           F  S  W    ++K
Sbjct: 159 LVDAYGGERDDSRLHQLILDV---------YRFAVSNPWPEYWLDK 195


>gi|220935292|ref|YP_002514191.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996602|gb|ACL73204.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1147

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 4/194 (2%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           LA+DP+ +  V A+AGSGKT++LV R+LRLLLA A P  +L +T T+ AA EM  R+ E 
Sbjct: 16  LATDPSLNISVFASAGSGKTYLLVTRILRLLLAGARPDGILAVTFTRLAAGEMQSRLTER 75

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +  W  L D  L   +  + G   + +   +AR L    L     ++  T HAFC+ ++ 
Sbjct: 76  LREWQTLDDTALDRALADM-GVSVDDAVRERARRLFEQTLLADRPVRATTFHAFCQDLLA 134

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDI 204
           +FPLEA +   F +AD E  ++L + A  + ++      +  + +A   ++   N  + +
Sbjct: 135 RFPLEARVPPGFELADNE--RELQDRAWDALVSEATRAPDATVARALETLIATLNSVDSV 192

Query: 205 ETLISDIISNRTAL 218
              +   +S+R   
Sbjct: 193 RKALDGFLSHREDW 206


>gi|254725483|ref|ZP_05187265.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A1055]
          Length = 1241

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALYTESRAHPNPEKWLDK 204


>gi|147677999|ref|YP_001212214.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
           thermopropionicum SI]
 gi|251764536|sp|A5D1P3|ADDA_PELTS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|146274096|dbj|BAF59845.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 1269

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 34/220 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +    S       V+A+AG+GKT +L +R++R +     P     LL +T T AAA
Sbjct: 19  WTAEQLEAISARGGDVLVAASAGTGKTAVLAERIIRRITDPIKPVDVDRLLVVTFTSAAA 78

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+                  + +   ++P    + +   LL       G   + T
Sbjct: 79  AEMRERIR---------------LALAREISRRPESGHLQRQAALL-------GRACIST 116

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++Q      +   F +ADE ++  +   A    L  +           F  +
Sbjct: 117 VHSFCLDLLRQHFYRIGLDPSFRVADETEAALIQTGA----LEEVFERRYAAEDNIFAAL 172

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++       + L+ +++     L    F  S  W    ++
Sbjct: 173 VDCYGGRHDDALLQELV-----LDAYKFARSTPWPEDWLD 207


>gi|321314788|ref|YP_004207075.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis BSn5]
 gi|320021062|gb|ADV96048.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           BSn5]
          Length = 1232

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 34/224 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        +   V+A AGSGKT +LV+R++R + A  +P     LL +T T A+
Sbjct: 10  TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K   ++P    + +   LL           + 
Sbjct: 70  AAEMKHRIAEAL---------------EKELVQRPGSLHIRRQLSLL-------NRASIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    ++   F IAD+ + + L +E     L  +  D   + +KAF+E
Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFE 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++    +  +  +  ++      ++  +  S+    K +E  +
Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEKWLESFV 202


>gi|169831437|ref|YP_001717419.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
           audaxviator MP104C]
 gi|251764572|sp|B1I493|ADDA_DESAP RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|169638281|gb|ACA59787.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 1230

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 90/230 (39%), Gaps = 46/230 (20%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  ++       ++  V+A AGSGKT +LV+RV+R +   A P     LL +T T AA
Sbjct: 5   NWTGPQEAAIGCREKNLLVAAGAGSGKTAVLVERVIRRISDPAAPVDVDRLLVVTFTNAA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV E +                +   K P    +     LL           + 
Sbjct: 65  AAEMRKRVAEAL---------------ERELEKHPGMPLLEHQLRLLPQA-------DIT 102

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+FC  +++++    ++   F +ADE ++  L +E  +                    
Sbjct: 103 TIHSFCAELLRRYHYLIDLDPEFRVADETEAAILRQETLEEFFEEQYR------------ 150

Query: 195 ILEISNDEDIETLISDIISNRTALKLIF-------FFFSYLWRRKIIEKS 237
              I+ D D+E L+      R  LKL         F  S  W    + ++
Sbjct: 151 --VITGDPDLEFLVEAYGGERDDLKLQNLVSGLHRFARSNPWPEAWLARA 198


>gi|311110685|ref|ZP_07712082.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22]
 gi|311065839|gb|EFQ46179.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22]
          Length = 1204

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 23/199 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + + TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA
Sbjct: 1   MTNFTKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+                      ++ ++      L + L       + T
Sbjct: 61  REMKERIKQKIS----------------------DQLEIEPDNQFLRSQLLDVDTANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    ++   F++  DE Q++ L E A +   A  +  +N++ +  +  
Sbjct: 99  IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQDFYDN 158

Query: 195 ILEISNDEDIETLISDIIS 213
                + E    L+  + +
Sbjct: 159 FSGDRDAEGARNLLLQLYN 177


>gi|116629672|ref|YP_814844.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|238854242|ref|ZP_04644586.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4]
 gi|122273390|sp|Q043G6|ADDA_LACGA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116095254|gb|ABJ60406.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|238833053|gb|EEQ25346.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4]
          Length = 1204

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 23/199 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + + TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA
Sbjct: 1   MTNFTKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+                      ++ ++      L + L       + T
Sbjct: 61  REMKERIKQKIS----------------------DQLEIEPDNQFLRSQLLDVDTANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    ++   F++  DE Q++ L E A +   A  +  +N++ +  +  
Sbjct: 99  IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQDFYDN 158

Query: 195 ILEISNDEDIETLISDIIS 213
                + E    L+  + +
Sbjct: 159 FSGDRDAEGARNLLLQLYN 177


>gi|312898123|ref|ZP_07757515.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis
           F0359]
 gi|310620791|gb|EFQ04359.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis
           F0359]
          Length = 1220

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 108/228 (47%), Gaps = 28/228 (12%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLT 69
            +D ++ T++++   +   ++  +SA AGSGKT +LV+R++R L+   +P   + ++ +T
Sbjct: 1   MVDKMAWTEAQEKAITSRNQNLLLSAAAGSGKTAVLVERIIRRLIDVDNPTDITEIMVVT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            TKAAA EM  R+   +   +   DE LSA +         +    +   LL +      
Sbjct: 61  FTKAAAGEMRERIGGALLKAA--EDETLSAAV---------RESARRQAALLPSA----- 104

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
             ++ T HAFC+ +++      ++   F IA  E+ + L +        ++    +EE  
Sbjct: 105 --RISTFHAFCQYVLRTRFYTIDLDPQFTIAGTEELELLKQSVWDDV--ALSYYEDEEKV 160

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           +    + ++  ++  +  +++I+     +K   +  S  W  + +E++
Sbjct: 161 RTMTALTDVFGNDRGDAGLTEIV-----MKAYEYIRSQPWPLQWLEEA 203


>gi|268319455|ref|YP_003293111.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785]
 gi|262397830|emb|CAX66844.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785]
          Length = 1204

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 30/231 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + + TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA
Sbjct: 1   MTNFTKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRVLSGTPVSSLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+                      ++ +       L + L       + T
Sbjct: 61  REMKERIKQKIS----------------------DQIEKEPNNQFLRSQLLDVDTANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    ++   F++  +E   +L++E     +    L+ N++  + FY+ 
Sbjct: 99  IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYDN 158

Query: 196 LEISND-EDIETLISDIIS------NRTALKLIFFFFSYLWRRKIIEKSLW 239
                D E    L+  + +      N     L     SY  +  +IE  LW
Sbjct: 159 FSGDRDAEGARNLLLQLYNTVVTEPNYEKF-LNNLPNSYQVQDDLIESDLW 208


>gi|227890027|ref|ZP_04007832.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849471|gb|EEJ59557.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           johnsonii ATCC 33200]
          Length = 1204

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 30/231 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + + TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA
Sbjct: 1   MTNFTKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRILSGTPVSSLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+                      ++ +       L + L       + T
Sbjct: 61  REMKERIKQKIS----------------------DQIEKESNNQFLRSQLLDVDTANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    ++   F++  +E   +L++E     +    L+ N++  + FY+ 
Sbjct: 99  IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYDN 158

Query: 196 LEISND-EDIETLISDIIS------NRTALKLIFFFFSYLWRRKIIEKSLW 239
                D E    L+  + +      N     L     SY  +  +IE  LW
Sbjct: 159 FSGDRDAEGARNLLLQLYNTVVTEPNYEKF-LNNLPNSYQVQDDLIESDLW 208


>gi|300215188|gb|ADJ79604.1| ATP-dependent helicase/nuclease subunit A (ATP-dependent
           helicase/nuclease addA) [Lactobacillus salivarius CECT
           5713]
          Length = 1248

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 29/221 (13%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +    T ++Q    D  ++  V+A+AGSGKT +LV+RV+  +        LL +T T+AA
Sbjct: 3   NGFKFTPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +                    K+ + +D  + +   +T L       + 
Sbjct: 63  AKEMKERIQIALR-------------------KELSTADSEEEKRRYLTQLSKLNVANIS 103

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFY 193
           T+HAFC  I++Q+    N+   F +  E+    L++E     L        + E K    
Sbjct: 104 TLHAFCLQIIKQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFKNLVI 163

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                 ND+ +  L+         +K   F  +     + +
Sbjct: 164 NFSSDRNDDGLSELV---------MKTYQFANANPNPEEWL 195


>gi|166032801|ref|ZP_02235630.1| hypothetical protein DORFOR_02516 [Dorea formicigenerans ATCC
           27755]
 gi|166027158|gb|EDR45915.1| hypothetical protein DORFOR_02516 [Dorea formicigenerans ATCC
           27755]
          Length = 190

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 34/216 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +  TK +Q +     R+  VSA AGSGKT +LV+R++ +L    HP     LL +T T+
Sbjct: 2   GVKWTKQQQQVIDLRDRNILVSAAAGSGKTAVLVERIITMLTDEEHPVNVDELLIVTFTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+                  I K   + P    + +   L+          +
Sbjct: 62  AAAGEMKERIR---------------GAIEKALEENPENEHLKRQATLIHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC ++++      +I   F  A+E + K L    +   L  ++ +   + ++ F
Sbjct: 100 ITTIHSFCLSVIRDHFHVIDIDPGFRTAEEGELKLL----RHDVLDELLEEKYAQKEERF 155

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
                       +  + ++I      K   +  SY 
Sbjct: 156 LRFSNAYGGRRNDKKLEEMIE-----KAYDYSRSYP 186


>gi|152974673|ref|YP_001374190.1| recombination helicase AddA [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|251764504|sp|A7GM37|ADDA_BACCN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|152023425|gb|ABS21195.1| Recombination helicase AddA [Bacillus cytotoxicus NVH 391-98]
          Length = 1242

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 35/221 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 15  WTDDQWKAVVAHGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 74

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+  ++P+   + K   LL           + T
Sbjct: 75  QEMKNRIGEAL---------------EKVLIEEPSSRHIRKQLSLL-------NKASIST 112

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           IH+FC  +++ +    +I   F IA++ +++ L EE     L     ++ N+   +    
Sbjct: 113 IHSFCLQVIRSYYYMLDIDPRFRIANQTENELLKEEVLDDILEEEYGMEENQLFFELVDR 172

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                ND+D++ +I  + +   A         +    K ++
Sbjct: 173 YTSDRNDDDLQRMILALHTAAGA---------HPNPEKWLD 204


>gi|301301162|ref|ZP_07207319.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851291|gb|EFK79018.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1248

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 29/221 (13%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +    T ++Q    D  ++  V+A+AGSGKT +LV+RV+  +        LL +T T+AA
Sbjct: 3   NGFKFTPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +                    K+ + +D  + +   +T L       + 
Sbjct: 63  AKEMKERIQIALR-------------------KELSTADSEEEKRRYLTQLSKLNVANIS 103

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFY 193
           T+HAFC  I++Q+    N+   F +  E+    L++E     L        + E +    
Sbjct: 104 TLHAFCLQIIKQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFENLVI 163

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                 ND+ +  L+         +K   F  +     + +
Sbjct: 164 NFSSDRNDDGLSELV---------MKTYQFANANPNPEEWL 195


>gi|282852209|ref|ZP_06261561.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1]
 gi|282556628|gb|EFB62238.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1]
          Length = 828

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 23/199 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + + TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA
Sbjct: 1   MTNFTKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+                      ++ ++      L + L       + T
Sbjct: 61  REMKERIKQKIS----------------------DQLEIEPDNQFLRSQLLDVDTANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    ++   F++  DE Q++ L E A +   A  +  +N++ +  +  
Sbjct: 99  IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQDFYDN 158

Query: 195 ILEISNDEDIETLISDIIS 213
                + E    L+  + +
Sbjct: 159 FSGDRDAEGARNLLLQLYN 177


>gi|308181395|ref|YP_003925523.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046886|gb|ADN99429.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 1249

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +  + T S+Q + +    +  VSA+AGSGKT +L++R++R +LA  +   LL +T T  A
Sbjct: 3   EGTNYTPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A  M  ++   I           +  I+++    P ++  S A   L   L   G   + 
Sbjct: 63  AKHMKQKLESQI-----------NKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANIS 111

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+ AFC  ++Q++    ++   F +  +     LI +    ++   + D +  L      
Sbjct: 112 TLDAFCLRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTLFDLLT- 170

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
               SND   + L      +R   +L  F  S       + K
Sbjct: 171 -ANFSNDRSDDGL------SRLIFRLFDFAQSTPDPEGWLSK 205


>gi|300361736|ref|ZP_07057913.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03]
 gi|300354355|gb|EFJ70226.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03]
          Length = 1204

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 32/222 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA
Sbjct: 1   MTKFTKEQDQAINDSGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+                      ++ ++      L   L       + T
Sbjct: 61  REMKERIKQKIS----------------------DQLEVEPDNQFLRNQLLDIDTANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    ++   F++  DE Q + L E A +   A  + ++N++ +  +  
Sbjct: 99  IDSFCLDVIRRFYYVIDLDPQFSVLTDETQGELLKERALREIEADYLEEDNQDFQDFYDN 158

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                + E    L+         L+L     +     K +++
Sbjct: 159 FSGDRDAEGARNLL---------LQLYNTVTTQPNYEKFLDE 191


>gi|270289913|ref|ZP_06196139.1| recombination helicase AddA [Pediococcus acidilactici 7_4]
 gi|270281450|gb|EFA27282.1| recombination helicase AddA [Pediococcus acidilactici 7_4]
          Length = 1238

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 29/218 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q        +  VSA+AGSGKT +LV+RV++ ++       LL +T T+AAAAEM 
Sbjct: 7   TPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAAAEMK 66

Query: 80  HRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            R+   I    S + D  L   ++   GK  N                      + T+HA
Sbjct: 67  ERIRAAIMKKISEVKDADLQNHLSLQLGKLNN--------------------ANISTLHA 106

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC A+++ +    ++   F I D  +S+ L E+     L   + +++E+ +  F  +   
Sbjct: 107 FCMAVIRNYYYVIDLDPAFRIMDPTESELLKEQVWAD-LREELYESDEDGQ--FARLTRN 163

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +++  +  + +++     L L  F  +       + K
Sbjct: 164 FSNDRSDAGLQELM-----LDLFEFANANPDPEAWLTK 196


>gi|206967662|ref|ZP_03228618.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134]
 gi|206736582|gb|EDZ53729.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 35/233 (15%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---ST 64
           +   E  +    T  +        R   V+A AGSGKT +LV+R+++ ++   +P     
Sbjct: 3   ENWPEKPEGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDR 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T AAA EM +R+ E +                K+   +P    + K   LL   
Sbjct: 63  LLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL--- 104

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                   + TIH+FC  +++ +    ++   F IA++ +++ L EE     L       
Sbjct: 105 ----NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIE 160

Query: 185 NEELKKAFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +  +   F+E+++  ++D   + L       R  L L     ++    K ++K
Sbjct: 161 DNTI---FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|304385834|ref|ZP_07368178.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           acidilactici DSM 20284]
 gi|304328338|gb|EFL95560.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           acidilactici DSM 20284]
          Length = 1238

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 29/218 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S+Q        +  VSA+AGSGKT +LV+RV++ ++       LL +T T+AAAAEM 
Sbjct: 7   TPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAAAEMK 66

Query: 80  HRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            R+   I    S + D  L   ++   GK  N                      + T+HA
Sbjct: 67  ERIRAAIMKKISEVKDADLQNHLSLQLGKLNN--------------------ANISTLHA 106

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC A+++ +    ++   F I D  +S+ L E+     L   + +++E+ +  F  +   
Sbjct: 107 FCMAVIRNYYYVIDLDPAFRIMDPTESELLKEQVWAD-LREELYESDEDGQ--FARLTRN 163

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +++  +  + +++     L L  F  +       + K
Sbjct: 164 FSNDRSDAGLQELM-----LDLFEFANANPDPEAWLTK 196


>gi|301052778|ref|YP_003790989.1| ATP-dependent nuclease subunit A [Bacillus anthracis CI]
 gi|300374947|gb|ADK03851.1| ATP-dependent nuclease, subunit A [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNAI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|75760177|ref|ZP_00740235.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492341|gb|EAO55499.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 757

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71
           +    T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T
Sbjct: 10  EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFT 69

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAA EM +R+ E +                K+   +P    + K   LL          
Sbjct: 70  NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + TIH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   
Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164

Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           F+E+++  ++D   + L       R  L L     ++    K ++K
Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|49480014|ref|YP_035378.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|81613917|sp|Q6HM43|ADDA_BACHK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|49331570|gb|AAT62216.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|300768583|ref|ZP_07078482.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493890|gb|EFK29059.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 1249

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +  + T S+Q + +    +  VSA+AGSGKT +L++R++R +LA  +   LL +T T  A
Sbjct: 3   EGTNYTPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A  M  ++   I           +  I+++    P ++  S A   L   L   G   + 
Sbjct: 63  AKHMKQKLESQI-----------NKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANIS 111

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+ AFC  ++Q++    ++   F +  +     LI +    ++   + D +  L      
Sbjct: 112 TLDAFCLRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTLFDLLT- 170

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
               SND   + L      +R   +L  F  S       + K
Sbjct: 171 -ANFSNDRSDDGL------SRLIFRLFDFAQSTPDPEGWLSK 205


>gi|196036255|ref|ZP_03103654.1| ATP-dependent nuclease, subunit A [Bacillus cereus W]
 gi|195991230|gb|EDX55199.1| ATP-dependent nuclease, subunit A [Bacillus cereus W]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           IH+FC  +++ +    ++   F IA++ +++ L EE     L     +++N    +    
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNMIFFELVDR 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                +D+D++ +I         L L     ++    K ++K
Sbjct: 172 YTSDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 204


>gi|291483547|dbj|BAI84622.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
           natto BEST195]
          Length = 1232

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 34/224 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        +   V+A AGSGKT +LV+R++R + A  +P     LL +T T A+
Sbjct: 10  TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K   ++P    + +   LL           + 
Sbjct: 70  AAEMKHRIAEAL---------------EKELVQRPGSLHIRRQLSLL-------NRASIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    ++   F IAD+ + + L +E     L  +  D   + +KAF+E
Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFE 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++    +  +  +  ++      ++  +  S+      +E  +
Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEAWLESFV 202


>gi|42780319|ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
 gi|81569872|sp|Q73C23|ADDA_BACC1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|42736238|gb|AAS40174.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|308173040|ref|YP_003919745.1| ATP-dependent deoxyribonuclease subunit A [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605904|emb|CBI42275.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
           amyloliquefaciens DSM 7]
          Length = 1235

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 34/223 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R++R + A   P     LL +T T A+A
Sbjct: 12  WTDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASA 71

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM HR+ E +                K   K P    + +   LL           + T
Sbjct: 72  AEMKHRIAEAL---------------EKELAKNPGSLHIRRQLSLL-------NRASIST 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++    ++   F +AD+ + + L +E     L  +  D   +  +AFYE+
Sbjct: 110 LHSFCLQVLKKYYYMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFYEL 165

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           ++    +  +  + D++      ++  +  S+      ++  +
Sbjct: 166 VDRYTTDRHDLDLQDLVK-----RVYEYSRSHPDPEAWLKSFV 203


>gi|218896177|ref|YP_002444588.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842]
 gi|251764501|sp|B7IL84|ADDA_BACC2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|218544151|gb|ACK96545.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71
           +    T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T
Sbjct: 10  EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFT 69

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAA EM +R+ E +                K+   +P    + K   LL          
Sbjct: 70  NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + TIH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   
Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164

Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           F+E+++  ++D   + L       R  L L     ++    K ++K
Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|328911095|gb|AEB62691.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
           amyloliquefaciens LL3]
          Length = 1234

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 34/223 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R++R + A   P     LL +T T A+A
Sbjct: 11  WTDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASA 70

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM HR+ E +                K   K P    + +   LL           + T
Sbjct: 71  AEMKHRIAEAL---------------EKELAKNPGSLHIRRQLSLL-------NRASIST 108

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++    ++   F +AD+ + + L +E     L  +  D   +  +AFYE+
Sbjct: 109 LHSFCLQVLKKYYYMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFYEL 164

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           ++    +  +  + D++      ++  +  S+      ++  +
Sbjct: 165 VDRYTTDRHDLDLQDLVK-----RVYEYSRSHPDPEAWLKSFV 202


>gi|47567601|ref|ZP_00238312.1| reticulocyte binding protein [Bacillus cereus G9241]
 gi|47555796|gb|EAL14136.1| reticulocyte binding protein [Bacillus cereus G9241]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLINEPGSQHIRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|254557326|ref|YP_003063743.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1]
 gi|254046253|gb|ACT63046.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1]
          Length = 1249

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +  + T S+Q + +    +  VSA+AGSGKT +L++R++R +LA  +   LL +T T  A
Sbjct: 3   EGTNYTPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A  M  ++   I           +  I+++    P ++  S A   L   L   G   + 
Sbjct: 63  AKHMKQKLESQI-----------NKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANIS 111

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+ AFC  ++Q++    ++   F +  +     LI +    ++   + D +  L      
Sbjct: 112 TLDAFCLRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTLFDLLT- 170

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
               SND   + L      +R   +L  F  S       + K
Sbjct: 171 -ANFSNDRSDDGL------SRLIFRLFDFAQSTPDPEGWLSK 205


>gi|148543293|ref|YP_001270663.1| recombination helicase AddA [Lactobacillus reuteri DSM 20016]
 gi|184152703|ref|YP_001841044.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112]
 gi|227364360|ref|ZP_03848453.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
           MM2-3]
 gi|325683559|ref|ZP_08163075.1| exonuclease RexA [Lactobacillus reuteri MM4-1A]
 gi|251764530|sp|A5VHK2|ADDA_LACRD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764531|sp|B2G532|ADDA_LACRJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|148530327|gb|ABQ82326.1| Recombination helicase AddA [Lactobacillus reuteri DSM 20016]
 gi|183224047|dbj|BAG24564.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112]
 gi|227070673|gb|EEI09003.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
           MM2-3]
 gi|324977909|gb|EGC14860.1| exonuclease RexA [Lactobacillus reuteri MM4-1A]
          Length = 1392

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 28/222 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T ++    +D   +  VSA+AGSGKT +LV R + L+        +L +T T AAA  M
Sbjct: 6   PTPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++                A + KI     N  D+   R  +   +       + TIHA
Sbjct: 66  RDKIR---------------AALQKIVQDSANPKDL---RDRMSNQINRLAAADISTIHA 107

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEI 195
           FC  +++++    ++   F +  +E  + L++E     ++  +  N EE    K +F E+
Sbjct: 108 FCLKLIKRYYYLIDLDPQFRLLTDETERLLLQEDVWHEVSEELYRNAEEKVSGKASFSEL 167

Query: 196 -LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            L  S+D D + L  D+I     L+L     +     K ++K
Sbjct: 168 VLNFSSDRDDQGL-DDLI-----LRLYEIANAQPDPEKWLQK 203


>gi|170707635|ref|ZP_02898087.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389]
 gi|170127410|gb|EDS96285.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|167635407|ref|ZP_02393721.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442]
 gi|254740248|ref|ZP_05197940.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Kruger
           B]
 gi|167529235|gb|EDR91988.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|28379194|ref|NP_786086.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1]
 gi|81630835|sp|Q88U41|ADDA_LACPL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|28272032|emb|CAD64937.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1]
          Length = 1249

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +  + T S+Q + +    +  VSA+AGSGKT +L++R++R +LA  +   LL +T T  A
Sbjct: 3   EGTNYTPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A  M  ++   I           +  I+++    P ++  S A   L   L   G   + 
Sbjct: 63  AKHMKQKLESQI-----------NKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANIS 111

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+ AFC  ++Q++    ++   F +  +     LI +    ++   + D +  L      
Sbjct: 112 TLDAFCLRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTLFDLLT- 170

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
               SND   + L      +R   +L  F  S       + K
Sbjct: 171 -ANFSNDRSDDGL------SRLIFRLFDFAQSTPDPEGWLSK 205


>gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonuclease subunit A [Bacillus licheniformis
           ATCC 14580]
 gi|52784929|ref|YP_090758.1| AddA [Bacillus licheniformis ATCC 14580]
 gi|81609244|sp|Q65LJ9|ADDA_BACLD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|52002776|gb|AAU22718.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis
           ATCC 14580]
 gi|52347431|gb|AAU40065.1| AddA [Bacillus licheniformis ATCC 14580]
          Length = 1230

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 34/222 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        R   V+A AGSGKT +LV+R++R +     P     LL +T T A+
Sbjct: 10  TWTDDQWKAIVSSGRDILVAAAAGSGKTAVLVERIIRKITDQERPVDVDRLLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K   + P    + +   LL           + 
Sbjct: 70  AAEMKHRIGEAL---------------EKELAENPGSLHLRRQLALL-------NKASIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    ++   F IAD+ + + L +E             N    +    
Sbjct: 108 TLHSFCLQVIRKYYYLIDVDPAFRIADQTEGELLGDEVLDELFEEEYKKGNPAFFELVDR 167

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                +D D++ L+          ++  F  S+      +  
Sbjct: 168 YTTDRHDLDLQHLVK---------RVYEFSRSHPDPEGWLHS 200


>gi|194467461|ref|ZP_03073448.1| recombination helicase AddA [Lactobacillus reuteri 100-23]
 gi|194454497|gb|EDX43394.1| recombination helicase AddA [Lactobacillus reuteri 100-23]
          Length = 1392

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 28/222 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T ++    +D   +  VSA+AGSGKT +LV R + L+        +L +T T AAA  M
Sbjct: 6   PTPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++                A + KI     N  D+   R  +   +       + TIHA
Sbjct: 66  RDKIR---------------AALQKIVQDSANPKDL---RDRMSNQINRLAAADISTIHA 107

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEI 195
           FC  +++++    ++   F +  +E  + L++E     ++  +  N EE    + +F E+
Sbjct: 108 FCLKLIKRYYYLIDLDPQFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPGRASFSEL 167

Query: 196 -LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            L  S+D D + L  D+I     L+L     +     K ++K
Sbjct: 168 VLNFSSDRDDQGL-DDLI-----LRLYEIANAQPDPEKWLQK 203


>gi|30261249|ref|NP_843626.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
 gi|47526411|ref|YP_017760.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184081|ref|YP_027333.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. Sterne]
 gi|65318520|ref|ZP_00391479.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains) [Bacillus
           anthracis str. A2012]
 gi|165873114|ref|ZP_02217732.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488]
 gi|167640214|ref|ZP_02398480.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193]
 gi|170688037|ref|ZP_02879249.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465]
 gi|177655492|ref|ZP_02936935.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174]
 gi|190566724|ref|ZP_03019641.1| ATP-dependent nuclease, subunit A [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816013|ref|YP_002816022.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684]
 gi|229601554|ref|YP_002865672.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248]
 gi|254682690|ref|ZP_05146551.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str.
           CNEVA-9066]
 gi|254734108|ref|ZP_05191821.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254753588|ref|ZP_05205624.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Vollum]
 gi|254758685|ref|ZP_05210712.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str.
           Australia 94]
 gi|81583096|sp|Q81TW1|ADDA_BACAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|30254863|gb|AAP25112.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
 gi|47501559|gb|AAT30235.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178008|gb|AAT53384.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Sterne]
 gi|164711168|gb|EDR16727.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488]
 gi|167511815|gb|EDR87195.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193]
 gi|170667932|gb|EDT18683.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465]
 gi|172080091|gb|EDT65187.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174]
 gi|190562276|gb|EDV16244.1| ATP-dependent nuclease, subunit A [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003890|gb|ACP13633.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684]
 gi|229265962|gb|ACQ47599.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|217958719|ref|YP_002337267.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187]
 gi|251764503|sp|B7HZR5|ADDA_BACC7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|217066718|gb|ACJ80968.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|206976508|ref|ZP_03237414.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97]
 gi|222094863|ref|YP_002528923.1| ATP-dependent nuclease, subunit a [Bacillus cereus Q1]
 gi|251764505|sp|B9ITE9|ADDA_BACCQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|206745191|gb|EDZ56592.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97]
 gi|221238921|gb|ACM11631.1| ATP-dependent nuclease, subunit A [Bacillus cereus Q1]
          Length = 1241

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|324325258|gb|ADY20518.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 1241

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|319646646|ref|ZP_08000875.1| AddA protein [Bacillus sp. BT1B_CT2]
 gi|317391234|gb|EFV72032.1| AddA protein [Bacillus sp. BT1B_CT2]
          Length = 1230

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 34/222 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        R   V+A AGSGKT +LV+R++R +     P     LL +T T A+
Sbjct: 10  TWTDDQWKAIVSSGRDILVAAAAGSGKTAVLVERIIRKITDQERPVDVDRLLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K   + P    + +   LL           + 
Sbjct: 70  AAEMKHRIGEAL---------------EKELAENPGSLHLRRQLALL-------NKASIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    ++   F IAD+ + + L +E             N    +    
Sbjct: 108 TLHSFCLQVIRKYYYLIDVDPAFRIADQTEGELLGDEVLDELFEEEYKKGNPAFFELVDR 167

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                +D D++ L+          ++  F  S+      +  
Sbjct: 168 YTTDRHDLDLQHLVK---------RVYEFSRSHPDPEGWLHS 200


>gi|227891362|ref|ZP_04009167.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           salivarius ATCC 11741]
 gi|227866940|gb|EEJ74361.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           salivarius ATCC 11741]
          Length = 1253

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 29/221 (13%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +    T ++Q    D  ++  V+A+AGSGKT +LV+RV+  +        LL +T T+AA
Sbjct: 8   NGFKFTPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +                    K+ + +D  + +   +T L       + 
Sbjct: 68  AKEMKERIQIALR-------------------KELSTADSEEEKRRYLTQLSKLNVANIS 108

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFY 193
           T+HAFC  I++Q+    N+   F +  E+    L++E     L        + E +    
Sbjct: 109 TLHAFCLQIIKQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFENLVV 168

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                 ND+ +  L+         +K   F  +     + +
Sbjct: 169 NFSSDRNDDGLSELV---------MKTYQFANANPNPDEWL 200


>gi|229541419|ref|ZP_04430479.1| recombination helicase AddA [Bacillus coagulans 36D1]
 gi|229325839|gb|EEN91514.1| recombination helicase AddA [Bacillus coagulans 36D1]
          Length = 1243

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 33/223 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        +   V+A AGSGKT +LV+R+++ +L    P     LL +T T AAA
Sbjct: 14  WTDDQWKAVMAKGQDILVAAAAGSGKTAVLVERIIQKILDEHDPLDIDELLIVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM HR+ +                I +    +P+   + K   LL           + T
Sbjct: 74  AEMRHRIGK---------------AIEEAISSRPDSHHLRKQLSLL-------NKAPIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +HAFC  +++++    +I   F IAD+ +++ L +E       +       +L   FY  
Sbjct: 112 LHAFCLEVIRKYYYLIDIDPGFRIADDTEAELLRDEVLDDLFETEYAKAGNDL---FYRT 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           ++  +++  +  +  +I      KL  F  S+      ++K +
Sbjct: 169 VDTFSNDRSDDELQHLIR-----KLYDFSRSHPDPSAWLDKMV 206


>gi|52144188|ref|YP_082640.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
 gi|81689028|sp|Q63EM2|ADDA_BACCZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|51977657|gb|AAU19207.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
          Length = 1241

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71
           +    T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T
Sbjct: 10  EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFT 69

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAA EM +R+ E +                K+   +P    + K   LL          
Sbjct: 70  NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + TIH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   
Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164

Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           F+E+++  ++D   + L       R  L L     ++    K ++K
Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|196037643|ref|ZP_03104954.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99]
 gi|196031885|gb|EDX70481.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99]
          Length = 1241

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 35/233 (15%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---ST 64
           +   +  +    T  +        R   V+A AGSGKT +LV+R+++ ++   +P     
Sbjct: 3   ENWPKKTEGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDR 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T AAA EM +R+ E +                K+   +P    + K   LL   
Sbjct: 63  LLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL--- 104

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                   + TIH+FC  +++ +    ++   F IA++ +++ L EE     L       
Sbjct: 105 ----NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIE 160

Query: 185 NEELKKAFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +  +   F+E+++  ++D   + L       R  L L     ++    K ++K
Sbjct: 161 DNTI---FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|218233217|ref|YP_002365926.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264]
 gi|251764502|sp|B7HGP9|ADDA_BACC4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|218161174|gb|ACK61166.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264]
          Length = 1241

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71
           +    T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T
Sbjct: 10  EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFT 69

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAA EM +R+ E +                K+   +P    + K   LL          
Sbjct: 70  NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + TIH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   
Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164

Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           F+E+++  ++D   + L       R  L L     ++    K ++K
Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|157691776|ref|YP_001486238.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus
           SAFR-032]
 gi|251764506|sp|A8FBR1|ADDA_BACP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|157680534|gb|ABV61678.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus
           SAFR-032]
          Length = 1234

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 34/224 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        +   V+A AGSGKT +LV+R++R +    HP     LL +T T A+
Sbjct: 10  TWTDDQWEAIVSEGQDILVAAAAGSGKTAVLVERLIRKMTRPEHPVDVDRLLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K   K P    M +   L+           + 
Sbjct: 70  AAEMKHRITEAL---------------EKELAKNPGSLHMRRQLSLM-------NRANIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++ F  E ++   F +AD+ + + L +E     L  +  D  +  K +F+E
Sbjct: 108 TLHSFCLQVLRTFYYEIDLDPGFRLADQTEGELLGDE----VLDELFEDEYKAGKPSFFE 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++    +  +  +  ++      ++  F  S+    + +   L
Sbjct: 164 LVDRYTSDRHDLDLQWLVK-----RIYDFSRSHPSPEQWMRAFL 202


>gi|296332487|ref|ZP_06874948.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305673768|ref|YP_003865440.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150405|gb|EFG91293.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412012|gb|ADM37131.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 1234

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 34/224 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        +   V+A AGSGKT +LV+R++R + A  +P     LL +T T A+
Sbjct: 10  TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDQLLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ + +                K   K+P    + +   LL           + 
Sbjct: 70  AAEMKHRIADAL---------------EKELVKRPGSLHIRRQLSLL-------NRASIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    ++   F IAD+ + + L +E     L  +  D   + +KAF+E
Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFE 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++    +  +  +  ++      ++  +  S+      +E  +
Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEAWLESFV 202


>gi|291548281|emb|CBL21389.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Ruminococcus sp.
           SR1/5]
          Length = 296

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 34/228 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKA 73
           +  T+ ++ + +   R+  VSA AGSGKT +LVQR+L  +   L       LL +T T+A
Sbjct: 3   VKWTEEQKKVITLRDRNILVSAAAGSGKTAVLVQRILSKIMDPLKPVDIDRLLIMTFTRA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                +   + P+   + +   L+ T        ++
Sbjct: 63  AAGEMRERIERGL---------------DQALAEDPDNEHLQRQMTLIHTA-------QI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI  FC  +++ +     +   +  ADE + K L E+  K        +   +      
Sbjct: 101 TTIDGFCAYVIRNYFHLIGLDPGYRTADEGELKLLQEDVLKELFEDHYAERKADFTAFVE 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                  DE +             L+L     S  W  K ++  + + 
Sbjct: 161 CYAPGKTDEGL---------KEHVLELYNAAMSNPWPEKWLDSCVENY 199


>gi|30019293|ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
 gi|296501840|ref|YP_003663540.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171]
 gi|81580749|sp|Q81GP9|ADDA_BACCR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|29894836|gb|AAP08125.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
 gi|296322892|gb|ADH05820.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171]
          Length = 1241

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|326938868|gb|AEA14764.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 1241

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|118476726|ref|YP_893877.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus
           thuringiensis str. Al Hakam]
 gi|225863093|ref|YP_002748471.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102]
 gi|251764499|sp|A0RAX7|ADDA_BACAH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|118415951|gb|ABK84370.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus
           thuringiensis str. Al Hakam]
 gi|225787430|gb|ACO27647.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102]
          Length = 1241

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|325912627|ref|ZP_08175010.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B]
 gi|325478048|gb|EGC81177.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B]
          Length = 1206

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|90962576|ref|YP_536492.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118]
 gi|122448460|sp|Q1WRS0|ADDA_LACS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|90821770|gb|ABE00409.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118]
          Length = 1248

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 29/221 (13%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +    T ++Q    D  ++  V+A+AGSGKT +LV+RV+  +        LL +T T+AA
Sbjct: 3   NGFKFTPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +                    K+ + +D  + +   +T L       + 
Sbjct: 63  AKEMKERIQIALR-------------------KELSTADSEEEKRRYLTQLSKLNVANIS 103

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFY 193
           T+HAFC  I++Q+    N+   F +  E+    L++E     L        + E +    
Sbjct: 104 TLHAFCLQIIKQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFENLVV 163

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                 ND+ +  L+         +K   F  +     + +
Sbjct: 164 NFSSDRNDDGLSELV---------MKTYQFANANPNPDEWL 195


>gi|218902338|ref|YP_002450172.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820]
 gi|251764500|sp|B7JDU4|ADDA_BACC0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|218537459|gb|ACK89857.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820]
          Length = 1240

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|238916498|ref|YP_002930015.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
 gi|238871858|gb|ACR71568.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
          Length = 1220

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 34/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T +++        +  VSA AGSGKT +LV+R++ ++     N     L+ +T TKAAA
Sbjct: 7   WTPAQKSAIDIRDCNVLVSAAAGSGKTAVLVERIISMITDPDKNIDIDRLVVVTFTKAAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           A+M  ++ + + +               +  + P   ++ +   LL          ++ T
Sbjct: 67  AQMKDKIRKALDS---------------MLDENPGDVNLLRQITLL-------NNAQITT 104

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  I++    E N+   F I DE + K +  +  +  L     + +EE    F+ +
Sbjct: 105 IDSFCLWIIRNHFPEVNLDPGFRIMDEGEKKLIENDVLEDVLEEFYAEADEE----FFNL 160

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           ++       ++ +  II      K+  F  S  W  +  ++ + 
Sbjct: 161 VDAFGMGRDDSGLVSIID-----KIYRFSRSNPWIDEWFDECML 199


>gi|228913817|ref|ZP_04077442.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845756|gb|EEM90782.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 1240

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 13  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 72

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+   +P    + K   LL           + T
Sbjct: 73  QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 110

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+
Sbjct: 111 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 167

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  ++D   + L       R  L L     ++    K ++K
Sbjct: 168 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 203


>gi|259500614|ref|ZP_05743516.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335]
 gi|302191303|ref|ZP_07267557.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus iners
           AB-1]
 gi|259167998|gb|EEW52493.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335]
          Length = 1206

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|325912158|ref|ZP_08174556.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D]
 gi|325476108|gb|EGC79276.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D]
          Length = 1206

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|312871743|ref|ZP_07731831.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a]
 gi|311092685|gb|EFQ51041.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a]
          Length = 1206

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   KL FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKKLDFFYQIDINKNDIISSNLW 211


>gi|312874236|ref|ZP_07734270.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d]
 gi|311090306|gb|EFQ48716.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d]
          Length = 1206

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|312875638|ref|ZP_07735639.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b]
 gi|311088892|gb|EFQ47335.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b]
          Length = 1206

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|229828348|ref|ZP_04454417.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM
           14600]
 gi|229792942|gb|EEP29056.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM
           14600]
          Length = 1315

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 102/220 (46%), Gaps = 23/220 (10%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  ++ +     R   VSA AGSGKT +LV+R++R+L     P     LL +T T+AAA
Sbjct: 6   WTPEQRQVIRARDRDLLVSAAAGSGKTAVLVERIIRMLTDPDAPLDVDQLLVVTFTRAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  ++   I    + +     +++     +K   S + +   L+ +        ++ T
Sbjct: 66  HEMKEKIRRAIQEAVNEA----RSQLDPTDRQKALLSHLQRQLTLVHSA-------QITT 114

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  +++    E ++   F IA+E + + + +E     +  +M ++ E   +AF ++
Sbjct: 115 IDSFCAYVVRNHFNEIDLEPDFRIAEEGEIRLIAQE----VMDQLMDEHYEMEDQAFIDL 170

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++      +  ++D++     + +     +  W  + ++
Sbjct: 171 VDLYARRGKDDALADML-----MSIYGTANADPWPMEWLD 205


>gi|194014992|ref|ZP_03053609.1| recombination helicase AddA [Bacillus pumilus ATCC 7061]
 gi|194014018|gb|EDW23583.1| recombination helicase AddA [Bacillus pumilus ATCC 7061]
          Length = 1232

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 34/224 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        +   V+A AGSGKT +LV+R++R +    HP     LL +T T A+
Sbjct: 10  TWTDDQWEAIVSEGQDILVAAAAGSGKTAVLVERLIRKMTRPEHPVDVDRLLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K   K P    M +   L+           + 
Sbjct: 70  AAEMKHRITEAL---------------EKELAKNPGSLHMRRQLSLM-------NRANIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++ F  E ++   F +AD+ + + L +E     L  +  D  +  K +F+E
Sbjct: 108 TLHSFCLQVLRTFYYEIDLDPGFRLADQTEGELLGDE----VLDELFEDEYKAGKPSFFE 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++    +  +  +  ++      ++  F  S+    + +   L
Sbjct: 164 LVDRYTSDRHDLDLQWLVK-----RIYEFSRSHPSPEQWMRAFL 202


>gi|257869454|ref|ZP_05649107.1| UvrD/REP helicase [Enterococcus gallinarum EG2]
 gi|257803618|gb|EEV32440.1| UvrD/REP helicase [Enterococcus gallinarum EG2]
          Length = 1226

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 27/218 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T ++     D   +  VSA+AGSGKT +LV+RV+  L A +    LL +T T+AAA E
Sbjct: 12  TFTDTQWQAIFDKGDNLLVSASAGSGKTTVLVRRVIEKLKAGSQIDELLIVTFTEAAARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   +                       N+    + R   +  L+      + T+H
Sbjct: 72  MKERIQVALQTA-------------------INQESQEQKRQHFVRQLQLLPTANISTLH 112

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFC  ++++F    ++   F +  +E    L++E   + L     + N+E   AF+ + E
Sbjct: 113 AFCLTVIRRFYYLIDLDPGFRMLTDETEILLLKEEIWTQLRDAHYEANDE---AFFRLTE 169

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
               +  +  + D+I     L L  F  +     K ++
Sbjct: 170 NFASDRSDETVGDLI-----LSLYDFARANPDPEKWLD 202


>gi|227543760|ref|ZP_03973809.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
           CF48-3A]
 gi|300908827|ref|ZP_07126290.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112]
 gi|227186259|gb|EEI66330.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
           CF48-3A]
 gi|300894234|gb|EFK87592.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112]
          Length = 1392

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 28/222 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T ++    +D   +  VSA+AGSGKT +LV R + L+        +L +T T AAA  M
Sbjct: 6   PTPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++                A + KI     N  D+   R  +   +       + TIHA
Sbjct: 66  RDKIR---------------AALQKIVQDSANPKDL---RDRMSNQINRLVAADISTIHA 107

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEI 195
           FC  +++++    N+   F +  +E  + L++E     ++  +  N EE    + +F E+
Sbjct: 108 FCLKLIKRYYYLINLDPQFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPGRASFSEL 167

Query: 196 -LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            L  S+D D + L +D+I     L+L     +     K ++K
Sbjct: 168 VLNFSSDRDDQGL-NDLI-----LRLYEIANAQPDPEKWLQK 203


>gi|163939035|ref|YP_001643919.1| recombination helicase AddA [Bacillus weihenstephanensis KBAB4]
 gi|251764507|sp|A9VJ02|ADDA_BACWK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|163861232|gb|ABY42291.1| Recombination helicase AddA [Bacillus weihenstephanensis KBAB4]
          Length = 1241

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 35/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T AAA
Sbjct: 14  WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIIREENPVDVDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+ E +                K+    P    + K   LL           + T
Sbjct: 74  QEMKNRIGEAL---------------EKVLIDGPGSQHIRKQLSLL-------NKASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           IH+FC  +++ +    ++   F IA++ +++ L EE     L     +++N    +    
Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNSIFFELVDR 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                +D+D++ +I         L L     ++    K ++K
Sbjct: 172 YTSDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 204


>gi|116493558|ref|YP_805293.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           pentosaceus ATCC 25745]
 gi|122264978|sp|Q03D71|ADDA_PEDPA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116103708|gb|ABJ68851.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           pentosaceus ATCC 25745]
          Length = 1235

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 31/219 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T S++   +    +  VSA+AGSGKT +LV+RV++ ++       LL +T T+AAA+EM 
Sbjct: 7   TLSQKQAINSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAASEMK 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   I                    KK N+    + ++     L       + T+HAF
Sbjct: 67  ERIRAAIV-------------------KKINEVSDIELQNHFSMQLNKLNNANISTLHAF 107

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY--EILE 197
           C +I++ +    ++   F I D  +S +L++E+  + L   + + +E+ K A        
Sbjct: 108 CMSIIRNYYYIIDLDPTFRIMDPTES-ELLKESVWADLREELYERDEDGKFALLTRNFSS 166

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             +DE ++ LI         L+L  F  +    +  +++
Sbjct: 167 DRSDEGLQDLI---------LELFEFSNANPDPQAWLQQ 196


>gi|328552685|gb|AEB23177.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
           amyloliquefaciens TA208]
          Length = 1234

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 34/223 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R++R + A   P     LL +T T A+A
Sbjct: 11  WTDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASA 70

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM HR+ E +                K   K P    + +   LL           + T
Sbjct: 71  AEMKHRIAEAL---------------EKELAKNPGSLHIRRQLSLL-------NRASIST 108

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++    ++   F +AD+ + + L +E     L  +  D   +  +AF+E+
Sbjct: 109 LHSFCLQVLKKYYYMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFFEL 164

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           ++    +  +  + D++      ++  +  S+      ++  +
Sbjct: 165 VDRYTTDRHDLDLQDLVK-----RVYEYSRSHPDPEAWLKSFV 202


>gi|257887557|ref|ZP_05667210.1| UvrD/REP helicase [Enterococcus faecium 1,141,733]
 gi|257823611|gb|EEV50543.1| UvrD/REP helicase [Enterococcus faecium 1,141,733]
          Length = 1240

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203


>gi|293378777|ref|ZP_06624934.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1]
 gi|292642570|gb|EFF60723.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1]
          Length = 1240

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203


>gi|293569779|ref|ZP_06680866.1| recombination helicase AddA [Enterococcus faecium E1071]
 gi|291587527|gb|EFF19404.1| recombination helicase AddA [Enterococcus faecium E1071]
          Length = 1240

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203


>gi|227551328|ref|ZP_03981377.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium
           TX1330]
 gi|257896051|ref|ZP_05675704.1| UvrD/REP helicase [Enterococcus faecium Com12]
 gi|227179539|gb|EEI60511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium
           TX1330]
 gi|257832616|gb|EEV59037.1| UvrD/REP helicase [Enterococcus faecium Com12]
          Length = 1240

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203


>gi|69246355|ref|ZP_00603911.1| UvrD/REP helicase [Enterococcus faecium DO]
 gi|258616338|ref|ZP_05714108.1| exonuclease RexA [Enterococcus faecium DO]
 gi|68195308|gb|EAN09759.1| UvrD/REP helicase [Enterococcus faecium DO]
          Length = 1240

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203


>gi|297584273|ref|YP_003700053.1| recombination helicase AddA [Bacillus selenitireducens MLS10]
 gi|297142730|gb|ADH99487.1| recombination helicase AddA [Bacillus selenitireducens MLS10]
          Length = 1244

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 35/221 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +    S    +  V+A AGSGKT +LV+R++R +    +P     LL +T T AAA
Sbjct: 12  WTDDQWRAISAEGNNLLVAAAAGSGKTAVLVERIIRKITDEENPADLDRLLIVTFTNAAA 71

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM HR+ E +                    ++P    + +  +LL           + T
Sbjct: 72  QEMRHRIGEAL---------------EDKISEQPRSLHLRRQLNLLHKAP-------IST 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC +I++ F    +I   F I DE +   L +E  +          N +    FY++
Sbjct: 110 LHSFCMSIVRDFYYVTDIDPSFRILDETEGVLLRDEVLEELFEEAYSSKNPDG---FYDM 166

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +E  SND   E L   +++      +  F  S+    + ++
Sbjct: 167 VERFSNDRSDEGLKQVLLA------VYHFSLSHPKPFEWLQ 201


>gi|142440|gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis]
 gi|2226192|emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1232

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 34/224 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        +   V+A AGSGKT +LV+R++R + A  +P     LL +T T A+
Sbjct: 10  TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K   ++P    + +   LL           + 
Sbjct: 70  AAEMKHRIAEAL---------------EKELVQRPGSLHIRRQLSLL-------NRASIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    ++   F IAD+ + + + +E     L  +  D   + +KAF+E
Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDE----VLDELFEDEYAKGEKAFFE 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++    +  +  +  ++      ++  +  S+      +E  +
Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEAWLESFV 202


>gi|295693034|ref|YP_003601644.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus crispatus
           ST1]
 gi|295031140|emb|CBL50619.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus crispatus
           ST1]
          Length = 1202

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 31/222 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK +Q    D      VSA+AGSGKT +LV+RVLR +L+      LL +T TKAAA
Sbjct: 1   MSQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ +            LSAE+ K              R  L   L       + T
Sbjct: 61  EEMKTRIKQ-----------ALSAELAKPGSN----------RRYLREQLNQVDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I AFC  ++ +F    N+   F+I  ++    L++E     +    L+  +   + FY+ 
Sbjct: 100 IDAFCLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEEKDVNFRHFYD- 158

Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236
              + D D +       S R   L L  F  +    R  ++K
Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYDFAMAKPEYRSWLKK 192


>gi|196044179|ref|ZP_03111415.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108]
 gi|196024818|gb|EDX63489.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108]
          Length = 1241

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71
           +    T  +        R   V+A AGSGKT +LV+R+++ ++   +P     LL +T T
Sbjct: 10  EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDHLLVVTFT 69

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAA EM +R+ E +                K+   +P    + K   LL          
Sbjct: 70  NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + TIH+FC  +++ +    ++   F IA++ +++ L EE     L       +  +   
Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164

Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           F+E+++  ++D   + L       R  L L     ++    K ++K
Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204


>gi|221308901|ref|ZP_03590748.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313225|ref|ZP_03595030.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318148|ref|ZP_03599442.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322423|ref|ZP_03603717.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|255767243|ref|NP_388944.2| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|239938590|sp|P23478|ADDA_BACSU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|225184870|emb|CAB12903.2| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 1232

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 34/224 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        +   V+A AGSGKT +LV+R++R + A  +P     LL +T T A+
Sbjct: 10  TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K   ++P    + +   LL           + 
Sbjct: 70  AAEMKHRIAEAL---------------EKELVQRPGSLHIRRQLSLL-------NRASIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    ++   F IAD+ + + + +E     L  +  D   + +KAF+E
Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDE----VLDELFEDEYAKGEKAFFE 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++    +  +  +  ++      ++  +  S+      +E  +
Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEAWLESFV 202


>gi|114566673|ref|YP_753827.1| ATP-dependent exoDNAse subunit beta [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|122318286|sp|Q0AXU8|ADDA_SYNWW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|114337608|gb|ABI68456.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 1236

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 32/228 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           +   T  ++   +    +  V+A AGSGKT +LV+R+++L+L +      LL +T T+AA
Sbjct: 1   MAHWTIEQEEAINARNSNLLVAAAAGSGKTTVLVERIIQLVLRDRIDIDRLLIVTFTQAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+               +A   K   K      + +  +LL           + 
Sbjct: 61  AGEMRERI---------------NAAFFKELEKGREDGHLRRQLYLL-------NRSSIS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFC  +++Q     NI  HF IAD  +++ +  E  +  L       N+        
Sbjct: 99  TIHAFCSDVVRQHFHLVNIDPHFRIADSTETELIKMEVLEELLDGEYEKGNDGFLDLVEA 158

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
                +D+ +E LI         L+L  F  S+      +E+ + ++A
Sbjct: 159 FGSNKDDKPLEALI---------LRLHSFIQSHPQPLSWLEEKIDNLA 197


>gi|154685514|ref|YP_001420675.1| AddA [Bacillus amyloliquefaciens FZB42]
 gi|251764498|sp|A7Z368|ADDA_BACA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|154351365|gb|ABS73444.1| AddA [Bacillus amyloliquefaciens FZB42]
          Length = 1235

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 34/223 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R++R + A   P     LL +T T A+A
Sbjct: 12  WTDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITAEEDPVDVDRLLVVTFTNASA 71

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM HR+ E +                K   K P    + +   LL           + T
Sbjct: 72  AEMKHRIAEAL---------------EKELAKNPGSLHIRRQLSLL-------NRASIST 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++    ++   F +AD+ + + L +E     L  +  D   +  +AF+E+
Sbjct: 110 LHSFCLQVLKKYYYMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFFEL 165

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            +    +  +  + D++      ++  +  S+      ++  +
Sbjct: 166 ADRYTTDRHDLDLQDLVK-----RVYEYSRSHPDPEVWLQSFV 203


>gi|293554030|ref|ZP_06674630.1| recombination helicase AddA [Enterococcus faecium E1039]
 gi|291601812|gb|EFF32064.1| recombination helicase AddA [Enterococcus faecium E1039]
          Length = 1240

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203


>gi|254478432|ref|ZP_05091809.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653]
 gi|214035603|gb|EEB76300.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653]
          Length = 1184

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 34/208 (16%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A AGSGKT +LV+R++ ++     P     LL +T T AAA+EM  R+ E + +     
Sbjct: 2   AAAAGSGKTAVLVERIINIVTDPEKPVDIDRLLVVTFTNAAASEMRERIAERLIS----- 56

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                     +  + P    ++    LL           + TIH+FC  ++++     ++
Sbjct: 57  ----------LLDQHPEDKRLADQLTLL-------NKATITTIHSFCLDVVRKHFFLLDL 99

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
              F + D+ ++  L  EA +     +   N+E     F  ++E       +  + D++ 
Sbjct: 100 DPSFRVGDDTETLLLKLEAMEELFEELYEKNDE----GFLLLVESYGGTKGDQYLQDVL- 154

Query: 214 NRTALKLIFFFFSYLWRRKIIEKSLWSI 241
               LKL  F  S  W  K +   L + 
Sbjct: 155 ----LKLYGFIRSLPWPEKWLNDVLEAF 178


>gi|257884720|ref|ZP_05664373.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
 gi|257820558|gb|EEV47706.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
          Length = 1240

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQEAVNSESDPVR-------------------RQHFTKQLILLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203


>gi|293380925|ref|ZP_06626959.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1]
 gi|290922500|gb|EFD99468.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1]
          Length = 1202

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 31/222 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK +Q    D      VSA+AGSGKT +LV+RVLR +L+      LL +T TKAAA
Sbjct: 1   MSQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ +            LSAE+ K              R  L   L       + T
Sbjct: 61  EEMKTRIKQ-----------ALSAELAKPGSN----------RRYLREQLNQVDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I AFC  ++ +F    N+   F+I  ++    L++E     +    L+  +   + FY+ 
Sbjct: 100 IDAFCLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYD- 158

Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236
              + D D +       S R   L L  F  +    R  ++K
Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYDFAMAKPEYRSWLKK 192


>gi|51893311|ref|YP_076002.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
           thermophilum IAM 14863]
 gi|81610460|sp|Q67MD5|ADDA_SYMTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|51857000|dbj|BAD41158.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
           thermophilum IAM 14863]
          Length = 1371

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 33/231 (14%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLC 67
              +  +  T  ++   +       V+A AGSGKT +LV+R++R L+    P     LL 
Sbjct: 1   MRAMSDVRWTPEQEQAITARGADVLVAAAAGSGKTAVLVERIIRRLVDERDPLDVDQLLV 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T+AAA EM  R+                A +       P    + +   LL      
Sbjct: 61  VTFTEAAATEMRDRI---------------GAALQAALAGNPENERLQRQLALL------ 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G   + T+H+FC ++++Q+     +    ++  E ++  L  E      A      +EE
Sbjct: 100 -GRASISTLHSFCLSLVRQYFYRLGLDPAVSVMGEHEALLLRHEVLDQLFARRF---DEE 155

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
               F+ +++       +  + +++     L +     +  W  + +E+SL
Sbjct: 156 EDGPFHALVDRYGGGRDDEGLRNLV-----LAIYDHMQALPWPDQWLEESL 201


>gi|313902120|ref|ZP_07835531.1| recombination helicase AddA [Thermaerobacter subterraneus DSM
           13965]
 gi|313467638|gb|EFR63141.1| recombination helicase AddA [Thermaerobacter subterraneus DSM
           13965]
          Length = 1488

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 83/220 (37%), Gaps = 34/220 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T ++        R+  VSA AGSGKT +LV+R+LR LL  A P     LL +T T+AAA
Sbjct: 14  WTDAQLQAICLRGRNLLVSAAAGSGKTSVLVERILRRLLDPASPVEIDRLLVVTFTEAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+   +                +   + P  + + +   LL       G   + T
Sbjct: 74  AEMKERIRNRL---------------EQALAEHPGDARLRRQLALL-------GRASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  I +Q+     +     +A E +++ L  E               +        
Sbjct: 112 VHSFCLRITRQYFYRLGLDPATRVAGEHEAQLLRFEVLDEVFERRYAQAAPDFLALVEAY 171

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                DE +  L+ D         L    ++  W    ++
Sbjct: 172 GGGRGDESLRKLVLD---------LYDSAYARPWPEAWLD 202


>gi|42519128|ref|NP_965058.1| hypothetical protein LJ1203 [Lactobacillus johnsonii NCC 533]
 gi|81667805|sp|Q74JA6|ADDA_LACJO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|41583415|gb|AAS09024.1| hypothetical protein LJ_1203 [Lactobacillus johnsonii NCC 533]
          Length = 1204

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 28/230 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK +    +D  +   VSA+AGSGKT +LV+RVL+ +L+    S+LL +T TKAAA
Sbjct: 1   MTKFTKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRILSGTPVSSLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + I+                      ++ +       L + L       + T
Sbjct: 61  REMKERIKQKIS----------------------DQIEKEPNNQFLRSQLLDVDTANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    ++   F++  +E   +L++E     +    L+ N++  + FY+ 
Sbjct: 99  IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYDN 158

Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFS-----YLWRRKIIEKSLW 239
                D E    L+  + +          F +     Y  +  +IE  LW
Sbjct: 159 FSGDRDAEGARNLLLQLYNTVVTEPNYEKFLNNLPNFYQVQDDLIESDLW 208


>gi|227878665|ref|ZP_03996580.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus
           JV-V01]
 gi|256843261|ref|ZP_05548749.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN]
 gi|256850382|ref|ZP_05555810.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus
           MV-1A-US]
 gi|262046470|ref|ZP_06019432.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US]
 gi|312978152|ref|ZP_07789896.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05]
 gi|227861729|gb|EEJ69333.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus
           JV-V01]
 gi|256614681|gb|EEU19882.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN]
 gi|256712779|gb|EEU27772.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus
           MV-1A-US]
 gi|260573341|gb|EEX29899.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US]
 gi|310894870|gb|EFQ43940.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05]
          Length = 1202

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 31/222 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK +Q    D      VSA+AGSGKT +LV+RVLR +L+      LL +T TKAAA
Sbjct: 1   MSQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ +            LSAE+ K              R  L   L       + T
Sbjct: 61  EEMKTRIKQ-----------ALSAELAKPGSN----------RRYLREQLNQVDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I AFC  ++ +F    N+   F+I  ++    L++E     +    L+  +   + FY+ 
Sbjct: 100 IDAFCLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYD- 158

Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236
              + D D +       S R   L L  F  +    R  ++K
Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYDFAMAKPEYRSWLKK 192


>gi|293572573|ref|ZP_06683547.1| recombination helicase AddA [Enterococcus faecium E980]
 gi|291607356|gb|EFF36704.1| recombination helicase AddA [Enterococcus faecium E980]
          Length = 1240

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203


>gi|257881059|ref|ZP_05660712.1| UvrD/REP helicase [Enterococcus faecium 1,231,502]
 gi|257889644|ref|ZP_05669297.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|260559204|ref|ZP_05831390.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|293563136|ref|ZP_06677601.1| recombination helicase AddA [Enterococcus faecium E1162]
 gi|294623302|ref|ZP_06702164.1| recombination helicase AddA [Enterococcus faecium U0317]
 gi|314939883|ref|ZP_07847089.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04]
 gi|314943730|ref|ZP_07850469.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C]
 gi|314949686|ref|ZP_07853004.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082]
 gi|314953232|ref|ZP_07856171.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A]
 gi|314993688|ref|ZP_07859036.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B]
 gi|314997395|ref|ZP_07862346.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01]
 gi|257816717|gb|EEV44045.1| UvrD/REP helicase [Enterococcus faecium 1,231,502]
 gi|257826004|gb|EEV52630.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|260074961|gb|EEW63277.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|291597270|gb|EFF28459.1| recombination helicase AddA [Enterococcus faecium U0317]
 gi|291604914|gb|EFF34383.1| recombination helicase AddA [Enterococcus faecium E1162]
 gi|313588530|gb|EFR67375.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01]
 gi|313591862|gb|EFR70707.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B]
 gi|313594698|gb|EFR73543.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A]
 gi|313597593|gb|EFR76438.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C]
 gi|313640846|gb|EFS05426.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04]
 gi|313643944|gb|EFS08524.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082]
          Length = 1240

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQESVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203


>gi|294618395|ref|ZP_06697972.1| recombination helicase AddA [Enterococcus faecium E1679]
 gi|291595345|gb|EFF26661.1| recombination helicase AddA [Enterococcus faecium E1679]
          Length = 1240

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQESVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203


>gi|257898678|ref|ZP_05678331.1| UvrD/REP helicase [Enterococcus faecium Com15]
 gi|257836590|gb|EEV61664.1| UvrD/REP helicase [Enterococcus faecium Com15]
          Length = 1240

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203


>gi|261207737|ref|ZP_05922422.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|294614014|ref|ZP_06693944.1| recombination helicase AddA [Enterococcus faecium E1636]
 gi|260078120|gb|EEW65826.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|291593121|gb|EFF24700.1| recombination helicase AddA [Enterococcus faecium E1636]
          Length = 1240

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     D   +  VSA+AGSGKT +LV+RV+  L        LL +T T+AAA EM
Sbjct: 13  FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E +    +   + +                    R      L       + T+HA
Sbjct: 73  KERIQEALQESVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    +I   F +  +E    L++E     L   +   N+E  + F   +  
Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           SND   + L + + S      L  F  +    +K +E+
Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203


>gi|304403945|ref|ZP_07385607.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9]
 gi|304346923|gb|EFM12755.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9]
          Length = 1338

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 28/219 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S T  +    S    +  V+A AGSGKT +LV+R++R + A+     LL  T TKAAA+E
Sbjct: 14  SWTDDQWRAVSAEGGNVLVAAAAGSGKTAVLVERIIRKISADTDVDRLLVATFTKAAASE 73

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV   +                    + P    + +   L+           + T+H
Sbjct: 74  MKERVRIALEGA---------------LARDPESEHLRRQLALI-------NRSSITTLH 111

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +     +   F +A E +S+ L  EA            +E+  +       
Sbjct: 112 SFCLEVIRSYYPLIGLDPGFRMAGETESELLRMEALDELFERKYAGEDEDSGQFLNLAER 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              +   E L       R   KL  F  S  W    +  
Sbjct: 172 YGGERGDEPLY------RLVQKLYDFSRSNPWPEHWLRA 204


>gi|295424857|ref|ZP_06817572.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM
           11664]
 gi|295065423|gb|EFG56316.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM
           11664]
          Length = 1199

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 88/219 (40%), Gaps = 31/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            TK +Q    D  +   VSA+AGSGKT +LVQRVL  +L+      LL +T TKAAA EM
Sbjct: 3   FTKEQQQAIDDRGKDILVSASAGSGKTTVLVQRVLDEILSGTDVDQLLIVTFTKAAAEEM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +T                           S  +  L   L       + TI A
Sbjct: 63  KERIKNALTQALQS----------------------SNQKRYLRRQLNKIDTANISTIDA 100

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++ +F    N+   F+I  DE Q+  L E A K   +S +   + +    FY    
Sbjct: 101 FCLEVIHRFYYVINLDPSFSILTDETQAALLRERALKDIESSFLTAEDNQDFIDFYN--N 158

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            + D D+E    D++     L L  F  +       +  
Sbjct: 159 FAGDRDVEAA-HDLL-----LDLYNFAMTKPNYIDWLRS 191


>gi|251796231|ref|YP_003010962.1| recombination helicase AddA [Paenibacillus sp. JDR-2]
 gi|247543857|gb|ACT00876.1| recombination helicase AddA [Paenibacillus sp. JDR-2]
          Length = 1277

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 28/224 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T  +            V+A AGSGKT +LV+R++R + + +    LL  T TKAAAAE
Sbjct: 14  TWTDDQWRAIVTEGSDVLVAAAAGSGKTAVLVERIIRKISSFSDVDRLLVATFTKAAAAE 73

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+                  + K   ++P    + +   L+           + T+H
Sbjct: 74  MKDRIR---------------IALEKELERQPESEHLRRQLALM-------NRASITTLH 111

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++++     +   F IA+E +S+ +  +            ++ +   AF  + +
Sbjct: 112 SFCLDVIRRYYPLIGLDPGFRIANETESELMRIDVLDQLFEEKYEGSSGD-SGAFLRLAD 170

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
               E  +  +  ++      +L  F  S+ W    + ++  S 
Sbjct: 171 RYGGERGDEPLYKLVQ-----QLYDFAQSHPWPEHWLRQTAASF 209


>gi|300114627|ref|YP_003761202.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
 gi|299540564|gb|ADJ28881.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
          Length = 1147

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 108/228 (47%), Gaps = 10/228 (4%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D        +  A +P  S  V A AGSGKT +L QR L LL     P  ++ +T T+
Sbjct: 1   MVDSSIPDADARRQALNPHGSFIVQAPAGSGKTELLTQRYLMLLARVEAPEEIVAITFTR 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM +R++E +   + + +             +   +   +   +  ++ + P  L+
Sbjct: 61  KAAAEMRYRIIEAL---ASVKESQPPKAEPAKTTWELACAVRRRDEGMGWSLEDHPARLR 117

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +QTI + C ++ +Q PL +   +   I ++ +S  L  +A + TLA +  ++  E   + 
Sbjct: 118 IQTIDSLCASLTRQMPLLSRFGAQPGITEDAES--LYRQAARRTLAEV--ESGAEWSASV 173

Query: 193 YEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
             +L   N+    IE L+S +++ R    L     +   +R+++E++L
Sbjct: 174 ETLLRHLNNNWGKIERLLSAMLARRDQW-LRHLASNEQLQRELLEEAL 220


>gi|325570415|ref|ZP_08146192.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156625|gb|EGC68802.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 1225

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 27/217 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T ++     D   +  VSA+AGSGKT +LV+RV+  L A     +LL +T T+AAA E
Sbjct: 12  TFTDTQWQAIFDKGDNILVSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   +                    +  N+    + R   +  L+      + T+H
Sbjct: 72  MKERIQAALQ-------------------QAINQESDEQKRQHFVRQLQLLPTANISTLH 112

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFC  ++++F    ++  +F +  +E    L++E   + L     + N+E   AF+ + E
Sbjct: 113 AFCLTVIRRFYYLIDLDPNFRMMTDETEILLMKEEIWTQLRDQQYEANDE---AFFRLTE 169

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             + +  +  + D+I     L L  F  +       +
Sbjct: 170 NFSSDRSDEGVGDLI-----LSLYDFARANPDPVNWL 201


>gi|150391860|ref|YP_001321909.1| recombination helicase AddA [Alkaliphilus metalliredigens QYMF]
 gi|251764495|sp|A6TVN2|ADDA_ALKMQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|149951722|gb|ABR50250.1| Recombination helicase AddA [Alkaliphilus metalliredigens QYMF]
          Length = 1197

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 31/228 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           + + T  +Q        +  +SA AGSGKT +LV+R+++++L +      LL +T T AA
Sbjct: 1   MKNWTTEQQAAIDARGSNLLISAAAGSGKTAVLVERIIQIILKDKIDIDRLLIVTFTNAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   I              + +++ K   ++ + +  +LL           + 
Sbjct: 61  AGEMRERIAGAI--------------MEEMERKTEQEAHLRRQINLL-------NRASIT 99

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+FC  ++++     ++   F I D  ++  +  EA +          +E     F+ 
Sbjct: 100 TIHSFCIDVVRRHFHIIDVDPGFRIGDITETSIMRLEALEELFEEEYQGAHE----TFFR 155

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           ++E       +  + D++     LK+  F  S  +    +++ +   +
Sbjct: 156 LVEAFGGTKEDRPLQDLV-----LKVYGFIQSQPYPEVWLKEKVGDFS 198


>gi|89098018|ref|ZP_01170904.1| AddA [Bacillus sp. NRRL B-14911]
 gi|89087181|gb|EAR66296.1| AddA [Bacillus sp. NRRL B-14911]
          Length = 1254

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 33/225 (14%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71
           +  + T  +        +   V+A AGSGKT +LV+R++  +++   P     LL +T T
Sbjct: 11  EGAAWTDDQWKAIMASGQDILVAAAAGSGKTAVLVERIINKIVSREEPVNVDELLVVTFT 70

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            A+AAEM HR+ E +                K   + P  + + K   LL          
Sbjct: 71  NASAAEMRHRIGEAL---------------EKAINRDPQSAHLRKQLSLL-------SRA 108

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T+H+FC  +++++    +I   F IADE + + L +E  +          N E    
Sbjct: 109 SISTLHSFCLEVIRKYYYLIDIDPGFRIADETEGQLLRDEVLEELFEEEYGKENNE---D 165

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           FY +++    +  +T + DII      +L  F  S     + ++K
Sbjct: 166 FYRLVDAFTSDRSDTALQDIIR-----ELYDFARSNPAPDQYLDK 205


>gi|257875815|ref|ZP_05655468.1| UvrD/REP helicase [Enterococcus casseliflavus EC20]
 gi|257809981|gb|EEV38801.1| UvrD/REP helicase [Enterococcus casseliflavus EC20]
          Length = 1225

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 27/217 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T ++     D   +  VSA+AGSGKT +LV+RV+  L A     +LL +T T+AAA E
Sbjct: 12  TFTDTQWQAIFDKGDNILVSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   +                    +  N+    + R   +  L+      + T+H
Sbjct: 72  MKERIQVALQ-------------------QAINQESDEQKRQHFVRQLQLLPTANISTLH 112

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFC  ++++F    ++  +F +  +E    L++E   + L     + N+E   AF+ + E
Sbjct: 113 AFCLTVIRRFYYLIDLDPNFRMMTDETEILLMKEEIWTQLRDQQYEANDE---AFFRLTE 169

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             + +  +  + D+I     L L  F  +       +
Sbjct: 170 NFSSDRSDEGVGDLI-----LSLYDFARANPDPVNWL 201


>gi|227892521|ref|ZP_04010326.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           ultunensis DSM 16047]
 gi|227865642|gb|EEJ73063.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           ultunensis DSM 16047]
          Length = 1207

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 90/222 (40%), Gaps = 31/222 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK ++   +D      VSA+AGSGKT +LV+RVLR +LA    + LL +T TKAAA
Sbjct: 1   MPHFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVNELLVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +T            E+ K              R  L   L       + T
Sbjct: 61  EEMKTRIKNALT-----------KELAKPGAN----------RRYLREQLNQIDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           I AFC  ++ +F    ++   F I  DE Q+  L E A +      +   +   +K +  
Sbjct: 100 IDAFCLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREIEGERLTAKDSSFRKFYDN 159

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                + +    L+ D         L  F  +    +K ++K
Sbjct: 160 FAGDRDADSSRDLLLD---------LYNFAMAKPDYQKWLQK 192


>gi|257866180|ref|ZP_05645833.1| UvrD/REP helicase [Enterococcus casseliflavus EC30]
 gi|257872511|ref|ZP_05652164.1| UvrD/REP helicase [Enterococcus casseliflavus EC10]
 gi|257800114|gb|EEV29166.1| UvrD/REP helicase [Enterococcus casseliflavus EC30]
 gi|257806675|gb|EEV35497.1| UvrD/REP helicase [Enterococcus casseliflavus EC10]
          Length = 1225

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 27/217 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T ++     D   +  VSA+AGSGKT +LV+RV+  L A     +LL +T T+AAA E
Sbjct: 12  TFTDTQWQAIFDKGDNILVSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   +                    +  N+    + R   +  L+      + T+H
Sbjct: 72  MKERIQVALQ-------------------QAINQESDEQKRQHFVRQLQLLPTANISTLH 112

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFC  ++++F    ++  +F +  +E    L++E   + L +   + N+E   AF+ + E
Sbjct: 113 AFCLTVIRRFYYLIDLDPNFRMMTDETEILLMKEEIWTQLRNQQYEANDE---AFFRLTE 169

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             + +  +  + D+I     L L  F  +       +
Sbjct: 170 NFSSDRSDEGVGDLI-----LSLYDFARANPDPVNWL 201


>gi|226314559|ref|YP_002774455.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599]
 gi|226097509|dbj|BAH45951.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599]
          Length = 1275

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 35/227 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV+R++R ++    P     LL +T T AAA
Sbjct: 13  WTDEQWQAIMQRGNNLLVAAAAGSGKTSVLVERIIRRIMDEKDPVGVDRLLVVTFTNAAA 72

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM HR+ + +                K     P+ S + +   LL           + T
Sbjct: 73  AEMRHRIGDALR---------------KALKDDPHSSHLRRQLALLQRA-------TITT 110

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  I++Q+     +   F IAD+ + + L ++  +  L S   ++ +     F+ +
Sbjct: 111 LHSFCLGILRQYYYLIELDPDFRIADQMEGELLRQDVLEEQLESWYENDAD-----FHAL 165

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
            ++  D   +            L+L  F  S+    + + ++    A
Sbjct: 166 ADVMLDGQDDHA-----LTLLLLRLYEFSRSHPAPEQWLGEAAGMFA 207


>gi|85373841|ref|YP_457903.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84786924|gb|ABC63106.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 1150

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 3/176 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           L+   +  Q  A DP  S W+SA+AG+GKT +L  RVLRLLL  +  P +LLCLT TKA 
Sbjct: 6   LVFPLEGNQAAAVDPRDSVWLSASAGTGKTQVLSARVLRLLLQKHCEPESLLCLTFTKAG 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKV 133
           AAEM+ RV +++ +W  + D  L+A++  I G   + +  ++AR L   +L+ P GGL++
Sbjct: 66  AAEMATRVNDVLASWVRMKDGDLAADLKAI-GAPIDDATRARARTLFAKVLDCPGGGLRI 124

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            TIHAF + ++  FP E+++       ++ + + L  E     L +   D+ + L 
Sbjct: 125 DTIHAFSQWLLAAFPEESDLVPGTRAMEDRERELLAREVLSELLLAAEEDDLDALA 180


>gi|172056768|ref|YP_001813228.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15]
 gi|251764524|sp|B1YKM8|ADDA_EXIS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|171989289|gb|ACB60211.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15]
          Length = 1183

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 34/218 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T  +Q           VSA AGSGKT +LV+R+ + ++    P     +L  T T A
Sbjct: 3   VQWTDEQQRAIDARGGHILVSAAAGSGKTAVLVERLTQRVINQEDPLTADRILVATFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV+E I A   ++               P+   + K R ++          ++
Sbjct: 63  AAKEMKTRVIEAIEAKIKVA---------------PDDLYLKKQRQMM-------NRAQI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC +I+++      +   F IA+E +   L ++  +    S     +     AFY
Sbjct: 101 TTIHSFCLSILRENYYRIGLDPAFRIAEEAELLLLQDDVLEEVFESFYASAD----PAFY 156

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
           E+++    +  +  +  +ISN     L  F  S     
Sbjct: 157 ELIDSYTSDRDDQAMLTLISN-----LYRFSRSLPDPE 189


>gi|325663487|ref|ZP_08151897.1| hypothetical protein HMPREF0490_02638 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470386|gb|EGC73617.1| hypothetical protein HMPREF0490_02638 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 195

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 25/207 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
            +S TK +  +     R+  VSA AGSGKT +LV+R++  L  +  P     +L +T T+
Sbjct: 2   GVSWTKEQAQVIHLRNRNILVSAAAGSGKTAVLVERIITRLTVDEPPIDVDQMLVVTFTE 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAEM  R+ +                I K   ++P    + +   L+          +
Sbjct: 62  AAAAEMKERIRD---------------AIEKKLEEQPENVHLQRQATLIHNA-------Q 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V TIH+FC ++++ +    ++   F IADE + K L ++  +  L +      +    A 
Sbjct: 100 VTTIHSFCLSVIRDYFHMIDLDPGFRIADEGELKLLRQDVLEEVLENCYTAGEQSFWIAS 159

Query: 193 YEILEISNDEDIETLISDIISNRTALK 219
             + +         L    ++   A++
Sbjct: 160 KALQQEGTTRRSRRLFCSCMNFLEAIR 186


>gi|220929196|ref|YP_002506105.1| recombination helicase AddA [Clostridium cellulolyticum H10]
 gi|251764516|sp|B8I2Y2|ADDA_CLOCE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|219999524|gb|ACL76125.1| recombination helicase AddA [Clostridium cellulolyticum H10]
          Length = 1248

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 32/226 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            TK +    +    +  V+A AG+GKT +LV+R++R +    +P    +LL +T T AAA
Sbjct: 6   WTKEQYAAITQKDCNLLVAAAAGAGKTAVLVERIIRKITDKENPVDIDSLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+                A I+    K     ++S+   LL           + T
Sbjct: 66  TEMRERI---------------GAAISDTIEKNQGSKNISRQLILL-------NKASITT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++       I   F I DE ++  L  E        I  D  E   + F+E+
Sbjct: 104 IHSFCLEVIRSNFQSIEIDPGFKILDETEATLLKSETLSDLFEEIYEDAEE--NEDFFEL 161

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           LE       +  I D++     + +  F  SY W  K +E+ + S 
Sbjct: 162 LESYGGNRDDLKIQDMV-----MSIYSFVQSYPWPEKWLEQQIESY 202


>gi|317132410|ref|YP_004091724.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3]
 gi|315470389|gb|ADU26993.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3]
          Length = 1186

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 32/223 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  ++        +  VSA AGSGKT +LV+RV+  +    HP     LL +T T AAA
Sbjct: 6   WTAEQKQAIEARGGTLLVSAAAGSGKTAVLVERVVGRMTDPNHPCDADRLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R               L+A +  +  + P  +++ + + LL           + T
Sbjct: 66  AEMRAR---------------LAARLHTLAVEHPEDANLRRQQILLQHA-------HIST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFC  +++    + +I   F IADE +++ L+ +     L             AF  +
Sbjct: 104 IHAFCLELLRAHFEKLDIPPDFRIADENEARVLLGDTLDELLEESYA--GGAAGGAFLHL 161

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            E+      +T ++D     T L+L  F  S       +++ L
Sbjct: 162 SEMLGAGRDDTSLTD-----TILRLFDFLRSLPDPDAWLDEKL 199


>gi|325956899|ref|YP_004292311.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus
           acidophilus 30SC]
 gi|325333464|gb|ADZ07372.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus
           acidophilus 30SC]
 gi|327183678|gb|AEA32125.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus
           GRL 1118]
          Length = 1206

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK ++   +D      VSA+AGSGKT +LV+RVLR +LA    S LL +T TKAAA
Sbjct: 1   MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVSELLVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +T                              R  L   L       + T
Sbjct: 61  EEMKTRIKNALTQEMAKPGVN---------------------RRYLREQLNQVDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           I AFC  ++ +F    ++   F I  DE Q+  L E A +      + + + + ++ +  
Sbjct: 100 IDAFCLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREVEGEFLTNKDSDFRRFYDN 159

Query: 195 ILEISNDEDIETLISDIIS 213
                + +    L+ D+ +
Sbjct: 160 FAGDRDADSPRDLLLDLYN 178


>gi|315038484|ref|YP_004032052.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus
           GRL 1112]
 gi|312276617|gb|ADQ59257.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus
           GRL 1112]
          Length = 1205

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK ++   +D      VSA+AGSGKT +LV+RVLR +LA    S LL +T TKAAA
Sbjct: 1   MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVSELLVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +T                              R  L   L       + T
Sbjct: 61  EEMKTRIKNALTQEMAKPGVN---------------------RRYLREQLNQVDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           I AFC  ++ +F    ++   F I  DE Q+  L E A +      + + + + ++ +  
Sbjct: 100 IDAFCLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREVEGEFLTNKDSDFRRFYDN 159

Query: 195 ILEISNDEDIETLISDIIS 213
                + +    L+ D+ +
Sbjct: 160 FAGDRDADSPRDLLLDLYN 178


>gi|15895530|ref|NP_348879.1| ATP-dependent exoDNAse beta subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|81529946|sp|Q97GV3|ADDA_CLOAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|15025265|gb|AAK80219.1|AE007727_3 ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
           (helicase and exonuclease domains) [Clostridium
           acetobutylicum ATCC 824]
          Length = 1252

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T+ ++        +  V+A AGSGKT +LV+R+++++    +P     LL +T T AA
Sbjct: 7   NWTEEQKEAIDTRNCNLLVAAAAGSGKTAVLVERIVKIITNEENPVDIDRLLVVTFTNAA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R+ +                I     + PN   + K   L+       G  K+ 
Sbjct: 67  ASEMRERIGD---------------AIVNKLCENPNSRVIQKQLALI-------GKSKIT 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--------NNE 186
           TIH+FC  +++      ++   F + DE +   L  E  +       L         N  
Sbjct: 105 TIHSFCLDVIKNNFHMLDLDPDFRVGDETEIILLKNETLEELFEDKYLQAEYTSKGINKN 164

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                F +++E       + ++ +++     + L  F  S     K ++K+    
Sbjct: 165 NNSIEFLKLVESYCGNKNDQVLFNMV-----MNLYNFSMSNPEPYKWLKKAAERF 214


>gi|325509678|gb|ADZ21314.1| ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
           (helicase and exonuclease domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 1250

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T+ ++        +  V+A AGSGKT +LV+R+++++    +P     LL +T T AA
Sbjct: 5   NWTEEQKEAIDTRNCNLLVAAAAGSGKTAVLVERIVKIITNEENPVDIDRLLVVTFTNAA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R+ +                I     + PN   + K   L+       G  K+ 
Sbjct: 65  ASEMRERIGD---------------AIVNKLCENPNSRVIQKQLALI-------GKSKIT 102

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--------NNE 186
           TIH+FC  +++      ++   F + DE +   L  E  +       L         N  
Sbjct: 103 TIHSFCLDVIKNNFHMLDLDPDFRVGDETEIILLKNETLEELFEDKYLQAEYTSKGINKN 162

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                F +++E       + ++ +++     + L  F  S     K ++K+    
Sbjct: 163 NNSIEFLKLVESYCGNKNDQVLFNMV-----MNLYNFSMSNPEPYKWLKKAAERF 212


>gi|167765657|ref|ZP_02437710.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1]
 gi|167712632|gb|EDS23211.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1]
 gi|291559893|emb|CBL38693.1| recombination helicase AddA, Firmicutes type [butyrate-producing
           bacterium SSC/2]
          Length = 1188

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 34/224 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK +Q +         VSA AGSGKT +LV+R+++ +    HP     LL +T TKA
Sbjct: 1   MPWTKQQQKVIDQRDADILVSAAAGSGKTAVLVERIIQKITDEKHPIDVDHLLVVTFTKA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R++               A + +   + P      K   L+          ++
Sbjct: 61  AAGEMKERIM---------------AALDEKVREFPGNQHFVKQLSLIHKA-------QI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC  +++ +     I  + A  DE +   + +E     L        E+    F 
Sbjct: 99  TTIHSFCMNLIRDYFYVLGIDPNTAPGDEGRLSAIRKEILDDLLEEAYEKKEED----FI 154

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            ++E  +    + +IS+ I     LKL     S+    K ++++
Sbjct: 155 NLIESYSPGKNDNIISEYI-----LKLYENARSHREPEKWLDQA 193


>gi|319650046|ref|ZP_08004195.1| AddA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398227|gb|EFV78916.1| AddA protein [Bacillus sp. 2_A_57_CT2]
          Length = 1250

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 33/222 (14%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +        +   V+A AGSGKT +LV+R++  ++A+  P     LL +T T A+
Sbjct: 11  TWTDDQWKAIMAKGQDILVAAAAGSGKTAVLVERIINKIIADEDPINVDELLVVTFTNAS 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR+ E +                K     P  + + K   LL           + 
Sbjct: 71  AAEMRHRIGEAL---------------EKAINADPKSAHLRKQVSLL-------NRASIS 108

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++++    +I   F IADE +++ L +E  +           +E  +AF+ 
Sbjct: 109 TLHSFCLEMIRKYYYMTDIDPGFRIADETEAQLLRDEVLEELFEEEY---GKEGNEAFFA 165

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +++   ++  +T + DII +     L  F  S     + ++ 
Sbjct: 166 LVDTFTNDRSDTALQDIIRD-----LYDFARSNPSPDQYLDS 202


>gi|58337450|ref|YP_194035.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus
           NCFM]
 gi|75357583|sp|Q5FJX0|ADDA_LACAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|58254767|gb|AAV43004.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus
           NCFM]
          Length = 1207

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 31/232 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK +Q    D      VSA+AGSGKT +LV+RVL+ +++    S LL +T TKAAA
Sbjct: 1   MPQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLKEIISGTQVSELLVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+              L+ E+ K              R  L   L       + T
Sbjct: 61  EEMKTRI-----------KTALTKELAKPGVN----------RKYLREQLNQVDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194
           I AFC  ++++F    N+   F I  +E    LI+E A +   A  + D N  ++  +  
Sbjct: 100 IDAFCLEVIRRFYYSVNLNPSFKILTDETQAALIKERALREIEAESLTDENSGIRYFYDN 159

Query: 195 ILEISNDEDIETLISDIISN-------RTALKLIFFFFSYLWRRKIIEKSLW 239
                +      L+ D+ +        R+ LK +   +       I++  LW
Sbjct: 160 FAGDRDANSPRDLLLDLYNFAMAKPEYRSWLKNLAKIYEV--NNNIVKSKLW 209


>gi|309809850|ref|ZP_07703700.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169802|gb|EFO71845.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D]
          Length = 431

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|227904086|ref|ZP_04021891.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC
           4796]
 gi|227868105|gb|EEJ75526.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC
           4796]
          Length = 1207

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 31/232 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK +Q    D      VSA+AGSGKT +LV+RVL+ +++    S LL +T TKAAA
Sbjct: 1   MPQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLKEIISGTQVSELLVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+              L+ E+ K              R  L   L       + T
Sbjct: 61  EEMKTRI-----------KTALTKELAKPGVN----------RKYLREQLNQVDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194
           I AFC  ++++F    N+   F I  +E    LI+E A +   A  + D N  ++  +  
Sbjct: 100 IDAFCLEVIRRFYYSVNLNPSFKILTDETQAALIKERALREIEAESLTDENSGIRYFYDN 159

Query: 195 ILEISNDEDIETLISDIISN-------RTALKLIFFFFSYLWRRKIIEKSLW 239
                +      L+ D+ +        R+ LK +   +       I++  LW
Sbjct: 160 FAGDRDANSPRDLLLDLYNFAMAKPEYRSWLKNLAKIYEV--NNNIVKSKLW 209


>gi|77919306|ref|YP_357121.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Pelobacter
           carbinolicus DSM 2380]
 gi|77545389|gb|ABA88951.1| ATP-dependent exoDNase (exonuclease V) beta subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 1118

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 98/221 (44%), Gaps = 8/221 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +  A DP RS  V A AGSGKT +L+QR+L LL     P  +L +T T+ AA EM
Sbjct: 9   PDHDARRQALDPARSFIVQAPAGSGKTELLIQRILALLGGVQQPEEVLAITFTRKAAGEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++  + A      +   A  T     +  ++ +         +LE P  L VQTI +
Sbjct: 69  RDRLVRALEAARQPEPQAEHARTT----WRLARAVLENDARHDWRLLENPVRLAVQTIDS 124

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA-SIMLDNNEELKKAFYEILE 197
           FC +++++ P  +   +  AI   E +++L  +A +  L  +   DN  E        L+
Sbjct: 125 FCASLVRRMPWLSRFGAQAAIV--EDARELYRQAAERVLKLAEGPDNYGEAACLLLSHLD 182

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
              +   E L+  +++ R       +      RR+I E  L
Sbjct: 183 NRMERLCE-LLVGMLARRDQWLRHIYGQQPEQRRQIFEGGL 222


>gi|309806227|ref|ZP_07700241.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b]
 gi|308167374|gb|EFO69539.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b]
          Length = 428

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|149184293|ref|ZP_01862611.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21]
 gi|148831613|gb|EDL50046.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21]
          Length = 1159

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 7/184 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             K  Q L+ +P  S W+SA+AG+GKT +L  RVLRLLL   A PS +LCLT TKA AAE
Sbjct: 7   PLKDAQGLSVNPEESVWLSASAGTGKTQVLSARVLRLLLQPGADPSQILCLTFTKAGAAE 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTI 136
           M+ RV  ++  W  +    L+ E+  + G   +    S+AR L   +L+ P GGL++ TI
Sbjct: 67  MAVRVNAVLARWVRMDAAQLAKELGYL-GASIDPETQSRARSLFARVLDCPGGGLRIDTI 125

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAF + ++  FP EA +       ++     L     +  L+ ++ + +  +++A  E+ 
Sbjct: 126 HAFAQYLLGAFPSEAGVLPGSQPMEDRDRDLL----SRDVLSDLLSEGDPHIREAVAEMS 181

Query: 197 EISN 200
               
Sbjct: 182 RRKG 185


>gi|317497577|ref|ZP_07955895.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895136|gb|EFV17300.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 727

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 34/229 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK +Q +         VSA AGSGKT +LV+R+++ +    HP     LL +T TKA
Sbjct: 1   MPWTKQQQKVIDQRDADILVSAAAGSGKTAVLVERIIQKITDEKHPIDVDHLLVVTFTKA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R++               A + +   + P      K   L+          ++
Sbjct: 61  AAGEMKERIM---------------AALDEKVREFPGNQHFVKQLSLIHKA-------QI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC  +++ +     I  + A  DE +   + +E     L        E+    F 
Sbjct: 99  TTIHSFCMNLIRDYFYVLGIDPNTAPGDEGRLSAIRKEILDDLLEEAYEKKEED----FI 154

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
            ++E  +    + +IS+ I     LKL     S+    K ++++  +I+
Sbjct: 155 NLIESYSPGKNDNIISEYI-----LKLYENARSHREPEKWLDQAEENIS 198


>gi|310657539|ref|YP_003935260.1| ATP-dependent nuclease subunit a [Clostridium sticklandii DSM 519]
 gi|308824317|emb|CBH20355.1| ATP-dependent nuclease, subunit A [Clostridium sticklandii]
          Length = 1184

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 31/226 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           ++ T ++Q        +  VSA AGSGKT +LVQR++ ++L        LL +T T AAA
Sbjct: 1   MAWTDAQQSAIDSRGENLLVSAAAGSGKTAVLVQRIIDIVLNEKVDVQNLLIVTFTNAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ +++                          D  +  H L   ++      + T
Sbjct: 61  AEMKDRIQKMLMQRML---------------------DNPQESHYLTKQIQNLPRASIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  I+++     ++   F IA+      +  +A +S        ++      F  +
Sbjct: 100 MHSFCIDILRRNFHMLDLDPSFKIANNALVSIMKTQAMESLFDEAYDSDDV----LFLSL 155

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           ++       +  +SD+I      K+  F  S  +  K +E    S 
Sbjct: 156 VDSYGGTKDDKKLSDLID-----KVYNFIQSQPYPLKWLESEAESF 196


>gi|315653554|ref|ZP_07906474.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC
           55195]
 gi|315488916|gb|EFU78558.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC
           55195]
          Length = 428

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIRNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
              + D ++E   S ++          N  A   +L FF+   + +  II  +LW
Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211


>gi|329911425|ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545902|gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1090

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 3/205 (1%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D  + T++    A DP  S  V A AGSGKT +LV R+LRLLLA   PS +L +T T+ A
Sbjct: 11  DAEASTEAFIAAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGTAPSEMLAITFTRKA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSA-EITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A EM  R+++++   +   D+ +    + +        + M  AR L   +L +P  L +
Sbjct: 71  AQEMRDRLIQLLRELALAPDDTVRTLLLERGIAASELNALMPLARGLYEKVLASPQALSI 130

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H++   +++  PL + +   +++     +  L  +A    +  +  D   E+++A  
Sbjct: 131 DTFHSWFAKLIRLAPLASGVPHGYSLTAATGALAL--DAYSRFMQVLNEDGQSEVRQALQ 188

Query: 194 EILEISNDEDIETLISDIISNRTAL 218
            + E+  D +   L+   +  R   
Sbjct: 189 HLYELVGDWNARKLLDAFVGKRAEW 213


>gi|291525355|emb|CBK90942.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale
           DSM 17629]
          Length = 1220

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 35/226 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T  ++ +     R   VSA AGSGKT +LV+R++  +  +  P     +L +T TKA
Sbjct: 3   VKWTSEQKKVIDLRDRDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV               S  I  ++ +KP+  ++ +   L+   L       +
Sbjct: 63  AAAEMRERV---------------SRAIDSLKEQKPDDENLQRQSTLVHNAL-------I 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEELKKAF 192
            TI +FC  ++Q    + N+   F I D+ + K ++++A           ++NEE     
Sbjct: 101 TTIDSFCLFVVQNNFAQLNLDPDFRIGDQAELKLMLKDALAQVFEDNYAREDNEEFINLI 160

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
               +  ND  +  ++ DI          +   S  W RK +   L
Sbjct: 161 DTYSKGRNDSAVRQMVEDI---------YYKAGSSSWPRKWMNSLL 197


>gi|291527058|emb|CBK92644.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale
           M104/1]
          Length = 1220

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 35/226 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T  ++ +     R   VSA AGSGKT +LV+R++  +  +  P     +L +T TKA
Sbjct: 3   VKWTSEQKKVIDLRDRDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV               S  I  ++ +KP+  ++ +   L+   L       +
Sbjct: 63  AAAEMRERV---------------SRAIDSLKEQKPDDENLQRQSTLVHNAL-------I 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEELKKAF 192
            TI +FC  ++Q    + N+   F I D+ + K ++++A           ++NEE     
Sbjct: 101 TTIDSFCLFVVQNNFAQLNLDPDFRIGDQAELKLMLKDALAQVFEDNYAREDNEEFINLI 160

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
               +  ND  +  ++ DI          +   S  W RK +   L
Sbjct: 161 DTYSKGRNDSAVRQMVEDI---------YYKAGSSSWPRKWMNSLL 197


>gi|225026995|ref|ZP_03716187.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353]
 gi|224955680|gb|EEG36889.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353]
          Length = 1221

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 34/223 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ TK ++       ++  VSA AG+GKT +LV R+  L++   +P      L +T T A
Sbjct: 1   MNYTKEQEQAIFLRDKNIMVSAGAGAGKTRVLVSRMAELIMDEKNPVEADRFLVMTFTNA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+               S ++ +   K P    + K    +           +
Sbjct: 61  AAAEMKERI---------------SLDLEERLAKDPENHYLRKQIRKIRQA-------DI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H+FC  +++    E +I   F I +E +   L ++A +  L        E   K   
Sbjct: 99  STVHSFCNHLIRTHYNELSIDPSFRIGEEGELFLLRQQAIEQLLEEAYASGRESFVKFAE 158

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                 +D+ +E L+ D         L  F  S+       EK
Sbjct: 159 SYAPGKSDKVLEELVGD---------LYRFSRSFPNASFWFEK 192


>gi|296283899|ref|ZP_06861897.1| ATP-dependent exoDNAse beta subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 1158

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/214 (31%), Positives = 116/214 (54%), Gaps = 8/214 (3%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           EQ  A+DP  S W+SA+AG+GKT +L  RVLRLLL     P ++LCLT TKA AAEM+ R
Sbjct: 3   EQGHAADPGHSVWLSASAGTGKTQVLSARVLRLLLQPGVEPGSILCLTFTKAGAAEMATR 62

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFC 140
           V E +  W  + + +L+  +  I G K + + ++ AR L   +L+ P GGL++ TIHAF 
Sbjct: 63  VNETLARWVRMEETLLAQHLRAI-GAKVDPTTLAHARTLFTRVLDCPGGGLRIDTIHAFA 121

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           + ++  FP EA +     +A +++++ L+    +  L  ++ + +E    A   +     
Sbjct: 122 QYLLAAFPEEAGLEPG-TVAMDDRTRGLL---AREVLTELVANADEADNSALAMLSLRLG 177

Query: 201 DEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            + ++  +      R   +    + S   RR+++
Sbjct: 178 PDGVKQWLMACAKARELWEGPQGWQS-PMRRQVL 210


>gi|255657915|ref|ZP_05403324.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544]
 gi|260850107|gb|EEX70114.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544]
          Length = 1283

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 29/226 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75
           +  T+ ++       R+  V+A AGSGKT +LV R++ +LL        +L +T T AAA
Sbjct: 1   MQYTEDQKKAIEARHRNILVAAAAGSGKTRVLVDRIIAQLLARECSVDEMLVVTFTNAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + +                    KK  ++D  +    L   +    G  + T
Sbjct: 61  TEMRERIDKALQ-------------------KKLLETDDRETAAWLERQIVLLSGASICT 101

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA---- 191
            HAFC+ +++Q     ++   F +A +++   +  +  +  L S      +E  KA    
Sbjct: 102 FHAFCQKVIRQNIDAIDVDPQFRLASDQEMVLMRRDVLEELLESSYKMPEDEAGKAKWQD 161

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           F E ++   D+  +  + + +     LKL  F  S  + +  + + 
Sbjct: 162 FLEFVDDYGDDHGDEAVYEAV-----LKLYHFCQSQPFPKAWLRQQ 202


>gi|326403648|ref|YP_004283730.1| double-strand break repair helicase AddA [Acidiphilium multivorum
           AIU301]
 gi|325050510|dbj|BAJ80848.1| double-strand break repair helicase AddA [Acidiphilium multivorum
           AIU301]
          Length = 1157

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 117/190 (61%), Gaps = 5/190 (2%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           SDP+ SA+V A+AGSGKT +L  R+LRL+L+ A P  +LCLT T+AAAAEM+ R+   + 
Sbjct: 16  SDPSISAFVGASAGSGKTKLLTDRLLRLMLSGATPGRILCLTFTRAAAAEMAIRLRRRLG 75

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            W+  +DE L A++  +     +     +AR L   +L+ PGGL++ T+HAFC++++++F
Sbjct: 76  DWAIATDETLDADLAALD-MPADTGTRHRARMLFGQVLDLPGGLRIDTVHAFCQSLLRRF 134

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           PLEA I+ HFA+ADE ++      A+++ L     D++   + A   +    ++ D   L
Sbjct: 135 PLEAQISPHFAVADEAEAAVRRRGAREAVL----GDDSRAAEAALRLLAGQISETDFAGL 190

Query: 208 ISDIISNRTA 217
              ++++  A
Sbjct: 191 TDRMLTDAQA 200


>gi|77164502|ref|YP_343027.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707]
 gi|254433459|ref|ZP_05046967.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76882816|gb|ABA57497.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosococcus
           oceani ATCC 19707]
 gi|207089792|gb|EDZ67063.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 1146

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            I+        +  A +P  S  V A AGSGKT +L QR L LL     P  ++ +T T+
Sbjct: 1   MINPSIPDADARRQALNPHGSFIVQAPAGSGKTELLTQRYLMLLARVEAPEEIVAITFTR 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM +R+   I A +   +                 +   +      ++ + P  L+
Sbjct: 61  KAAAEMRYRI---IAALASAKENQPPKTEPAKTTWDLACAVRRRDEGKGWSLEDHPARLR 117

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +QTI + C ++ +Q PL +   +   I ++ +  +L  +A   TLA +  ++  E   + 
Sbjct: 118 IQTIDSLCASLTRQMPLLSRFGAQPGITEDAE--RLYRQAAHRTLAEV--ESGAEWSASV 173

Query: 193 YEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
             +L   N+    IE L+S +++ R            L +R+I+E++L
Sbjct: 174 ETLLRHLNNNWGKIERLLSAMLARRDQWLRHLAGDEQL-QREILEEAL 220


>gi|315174632|gb|EFU18649.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1346]
          Length = 1271

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 21  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 81  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209


>gi|148260455|ref|YP_001234582.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5]
 gi|146402136|gb|ABQ30663.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5]
          Length = 1157

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 117/190 (61%), Gaps = 5/190 (2%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           SDP+ SA+V A+AGSGKT +L  R+LRL+L+ A P  +LCLT T+AAAAEM+ R+   + 
Sbjct: 16  SDPSISAFVGASAGSGKTKLLTDRLLRLMLSGATPGRILCLTFTRAAAAEMAIRLRRRLG 75

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            W+  +DE L A++  +     +     +AR L   +L+ PGGL++ T+HAFC++++++F
Sbjct: 76  DWAIATDETLDADLAALD-MPADTGTRHRARMLFGQVLDLPGGLRIDTVHAFCQSLLRRF 134

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           PLEA I+ HFA+ADE ++      A+++ L     D++   + A   +    ++ D   L
Sbjct: 135 PLEAQISPHFAVADEAEAAVRRRGAREAVL----GDDSRAAEAALRLLAGQISETDFAGL 190

Query: 208 ISDIISNRTA 217
              ++++  A
Sbjct: 191 TDRMLTDAQA 200


>gi|145589486|ref|YP_001156083.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047892|gb|ABP34519.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1185

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 10/218 (4%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           Q  S+ +  + +    + LA DP +S  VSA AGSGKT +LV R++RLLL +  P  +L 
Sbjct: 7   QAMSKVLSEVEKQAYSESLACDPHQSVIVSACAGSGKTWLLVARMVRLLLDDVKPQEILA 66

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILE 126
           LT T+ AA EM  R+  ++  +S + D+ L  E+  +       +S + KA+ L   +L 
Sbjct: 67  LTFTRKAAQEMRDRLYGLLEHFSKIDDDSLMQELIARGLNVDQARSYLLKAKALYEEVLA 126

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            P  + + T H +   ++   P+   I   F +   E +K+L  E       ++  ++  
Sbjct: 127 NPQPIVIDTFHGWFGRLLGAAPVSLGIQPGFTL--REDAKRLQSECLDDWWGNLPAEHKG 184

Query: 187 ELKKAFYEILEISNDEDIETLI---SDIISNRTALKLI 221
                +  +L+     + + L+   + +   R A    
Sbjct: 185 H----YDVLLKHLGSHETQKLLMGKASLFKQRGAWNFY 218


>gi|315144626|gb|EFT88642.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2141]
          Length = 1271

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 21  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 81  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209


>gi|327534744|gb|AEA93578.1| ATP-dependent nuclease subunit A [Enterococcus faecalis OG1RF]
          Length = 1271

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 21  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 81  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209


>gi|329924069|ref|ZP_08279332.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5]
 gi|328940908|gb|EGG37216.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5]
          Length = 1376

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 30/221 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAA 75
            +  +    +       V+A AGSGKT +LV+R++R +L +A       LL  T TKAAA
Sbjct: 13  WSDDQWKAIALSGDDMLVAAAAGSGKTAVLVERIIRKILDDAAGFSVDRLLVATFTKAAA 72

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                +   + P+   + +   LL       G   + T
Sbjct: 73  AEMRGRIREAL---------------DRELDRDPDNEHIRRQLALL-------GRASITT 110

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++     +   F I +E ++  + ++  +        +   + +  F  +
Sbjct: 111 LHSFCMEVIRRYYQLIPLDPGFRILNEHEADLMRQDMLEELFEEKYGEAEGDPESRFLRL 170

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +  + E  +  +  ++      +L  F  S+ W    + +
Sbjct: 171 ADWFSGERTDDALYRLVQ-----RLYDFSRSHSWPSHWLRE 206


>gi|319401754|gb|EFV89962.1| recombination helicase AddA [Staphylococcus epidermidis FRI909]
          Length = 1218

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A E
Sbjct: 11  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                K PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  +F  + E ++  L+E+     L       +    +   ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198


>gi|300859922|ref|ZP_07106010.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11]
 gi|300850740|gb|EFK78489.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11]
          Length = 1264

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|325291019|ref|YP_004267200.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966420|gb|ADY57199.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 1273

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 32/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +    S+   S  V+A AG+GKT +LV+R++R +    HP     LL +T T AAA
Sbjct: 6   WTNEQWEAISEKDCSILVAAAAGAGKTAVLVERIIRKITDRQHPVDIDKLLIVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E I+               K+    P+  ++ +   LL           + T
Sbjct: 66  AEMRERIAEAIS---------------KVLEDNPDSPNIQRQLTLLHKA-------SITT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++      N+   F IA+E ++  +  E+ +     +     E   + F E+
Sbjct: 104 IHSFCLEVIRTNFHRINLDPDFRIANETEAALMKLESLQELFEELY--EKETTDENFDEL 161

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           LE       +  + D++     L L  F  S  W  K ++ 
Sbjct: 162 LECYGGNRDDQALQDMV-----LNLYNFIQSSPWPEKWLQD 197


>gi|295112697|emb|CBL31334.1| DNA helicase/exodeoxyribonuclease V, subunit A [Enterococcus sp.
           7L76]
 gi|315160943|gb|EFU04960.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0645]
          Length = 1264

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|29375689|ref|NP_814843.1| exonuclease RexA [Enterococcus faecalis V583]
 gi|81437087|sp|Q836J8|ADDA_ENTFA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|29343150|gb|AAO80913.1| exonuclease RexA [Enterococcus faecalis V583]
          Length = 1264

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|315168381|gb|EFU12398.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1341]
          Length = 1264

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|313472179|ref|ZP_07812671.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153]
 gi|313449090|gb|EEQ68552.2| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153]
          Length = 1173

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 24/199 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++ TK ++   +   +   VSA+AGSGKT +L +RV++L+        LL +T TKAAA
Sbjct: 1   MVNYTKEQEAAINTREKDILVSASAGSGKTMVLAERVIKLIKDGTSLDNLLVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+  ++                       N+         L   L       + T
Sbjct: 61  NEMKERIKRVL-----------------------NEEIAQNNSRELKRELLRAEVANIST 97

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++ +F     +   F++  +E    L++E     L      N +   + FY+ 
Sbjct: 98  IDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFSNQDNPYRIFYDN 157

Query: 196 LEISND-EDIETLISDIIS 213
                D      L+ D+ +
Sbjct: 158 FAGDRDANGARELLLDLYN 176


>gi|227552897|ref|ZP_03982946.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           HH22]
 gi|227177969|gb|EEI58941.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           HH22]
          Length = 1264

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|238854633|ref|ZP_04644963.1| recombination helicase AddA [Lactobacillus jensenii 269-3]
 gi|260664424|ref|ZP_05865276.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US]
 gi|282932976|ref|ZP_06338373.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
 gi|238832423|gb|EEQ24730.1| recombination helicase AddA [Lactobacillus jensenii 269-3]
 gi|260561489|gb|EEX27461.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US]
 gi|281303011|gb|EFA95216.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
          Length = 1186

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 24/199 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++ TK ++   +   +   VSA+AGSGKT +L +RV++L+        LL +T TKAAA
Sbjct: 1   MVNYTKEQEAAINTREKDILVSASAGSGKTMVLAERVIKLIKDGTSLDNLLVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+  ++                       N+         L   L       + T
Sbjct: 61  NEMKERIKRVL-----------------------NEEIAQNNSRELKRELLRAEVANIST 97

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++ +F     +   F++  +E    L++E     L      N +   + FY+ 
Sbjct: 98  IDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFSNQDNPYRIFYDN 157

Query: 196 LEISND-EDIETLISDIIS 213
                D      L+ D+ +
Sbjct: 158 FAGDRDANGARELLLDLYN 176


>gi|299535964|ref|ZP_07049283.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728569|gb|EFI69125.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1]
          Length = 1239

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 30/221 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ T  +        +   VSA AGSGKT +L+ R++  ++A  +P     LL +T T A
Sbjct: 12  VTWTDDQWKAIYTSGQDTLVSAAAGSGKTAVLINRMIEKVIATENPINVDELLVVTFTNA 71

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +AAEM HR               +S  + K   + P  + + +   L+          ++
Sbjct: 72  SAAEMRHR---------------MSEALEKAIAENPTSNHLRRQLSLV-------NKAQI 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H+FC AI++QF    +I   F IA+E +   L ++     L       +E+  +A Y
Sbjct: 110 STLHSFCLAIVKQFAYLLDIDPGFRIANEAEIALLRDDVLAEVLEDAYDSEDEDHVQAIY 169

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            +++    +  +  I  +IS     KL      +   +K +
Sbjct: 170 RLVDSFTSDRDDQAIETLIS-----KLYDTSRVHAEPQKWL 205


>gi|229550393|ref|ZP_04439118.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           ATCC 29200]
 gi|229304515|gb|EEN70511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           ATCC 29200]
 gi|315156546|gb|EFU00563.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0043]
 gi|315158289|gb|EFU02306.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0312]
          Length = 1271

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 21  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 81  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209


>gi|315573705|gb|EFU85896.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309B]
 gi|315582680|gb|EFU94871.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309A]
          Length = 1264

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|253574626|ref|ZP_04851966.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845672|gb|EES73680.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 1341

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 32/222 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            +  +    +       V+A AGSGKT +LV+R++R L     P     LL  T TKAAA
Sbjct: 14  WSDDQWRAIALSGGDMLVAAAAGSGKTAVLVERIIRKLTDREQPLSVDRLLVATFTKAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                K   K P    ++    +L       G   + T
Sbjct: 74  AEMRGRITEAL---------------EKELAKDPGNEYLNHQLAML-------GRASITT 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  ++Q++     +   F IA E ++  L +E  +  L        E+    F ++
Sbjct: 112 LHSFCMEVIQRYYTLIPLDPGFRIASESETALLRQEVLEELLEDKYGSEPED--SPFLKL 169

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           +++   E  +T +  ++      +L  F  S+ W    ++++
Sbjct: 170 VDLFGGERSDTAVFTLVQ-----RLYDFSRSHPWPDHWLQEA 206


>gi|315153691|gb|EFT97707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0031]
          Length = 1271

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 21  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 81  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209


>gi|255973164|ref|ZP_05423750.1| UvrD/REP helicase [Enterococcus faecalis T1]
 gi|257422970|ref|ZP_05599960.1| exonuclease rexA [Enterococcus faecalis X98]
 gi|312951365|ref|ZP_07770263.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102]
 gi|255964182|gb|EET96658.1| UvrD/REP helicase [Enterococcus faecalis T1]
 gi|257164794|gb|EEU94754.1| exonuclease rexA [Enterococcus faecalis X98]
 gi|310630625|gb|EFQ13908.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102]
          Length = 1264

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|259502070|ref|ZP_05744972.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041]
 gi|259169983|gb|EEW54478.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041]
          Length = 1386

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 32/223 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T ++Q   SD  R+  VSA+AGSGKT +LV R + L+    A    +L +T T AAA  
Sbjct: 6   PTPAQQQAISDRDRNIIVSASAGSGKTAVLVNRAVALIKEGRATVDRMLLVTFTDAAAKN 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  ++ + +   +                         + R L+   +       + TIH
Sbjct: 66  MRDKIRQRLQEVAQAEP---------------------RLRDLMNEQVNRLAVADISTIH 104

Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYE 194
           AFC  +++++     +   F +  D+ +   L E+  +          +EE   A  F +
Sbjct: 105 AFCLKLIKRYYFLIGLDPQFRLLTDDTERLLLQEDVLRQVNEQFYASADEESDDAASFGQ 164

Query: 195 I-LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + L  S+D D + L +D++     LKL+    +     + + +
Sbjct: 165 LVLNFSSDRDDQGL-NDLV-----LKLMEIANAQPNPEQWLAQ 201


>gi|307274585|ref|ZP_07555765.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134]
 gi|306508737|gb|EFM77827.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134]
          Length = 1263

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|257082924|ref|ZP_05577285.1| exonuclease RexA [Enterococcus faecalis E1Sol]
 gi|256990954|gb|EEU78256.1| exonuclease RexA [Enterococcus faecalis E1Sol]
          Length = 1264

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|315170964|gb|EFU14981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1342]
          Length = 1271

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 21  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 81  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209


>gi|90415966|ref|ZP_01223899.1| UvrD/REP helicase family protein [marine gamma proteobacterium
           HTCC2207]
 gi|90332340|gb|EAS47537.1| UvrD/REP helicase family protein [marine gamma proteobacterium
           HTCC2207]
          Length = 1147

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++  A DP++S  VSA AGSGKT ++ QRVLRLL    +P  +L +T T+ AA EM+ R
Sbjct: 8   QQRRQALDPSQSFIVSAPAGSGKTGLITQRVLRLLCTVENPEEILSITFTRKAAREMASR 67

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +   ++        E    Q      + + + R L   +L+ PG L++QTI  FC 
Sbjct: 68  IHSALRQAAYTPRPDNEYE---AQTWDLAAAAVERNRQLGWNLLDMPGRLRIQTIDGFCR 124

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I  QF LE            EQ +   + A ++ L  I        + A   +   ++ 
Sbjct: 125 YIASQFALETKFGPIPE--PSEQPQIHYQSAARALLDKIEEAGPVAEQLAVILVHTGNDM 182

Query: 202 EDIETLISDIISNRTALKLIFF 223
              ETL+S+++  R     + +
Sbjct: 183 ARCETLLSELLGKREQWLPLIY 204


>gi|256965486|ref|ZP_05569657.1| UvrD/REP helicase [Enterococcus faecalis HIP11704]
 gi|307273804|ref|ZP_07555026.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855]
 gi|256955982|gb|EEU72614.1| UvrD/REP helicase [Enterococcus faecalis HIP11704]
 gi|306509489|gb|EFM78537.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855]
          Length = 1264

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|27467582|ref|NP_764219.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC
           12228]
 gi|81842983|sp|Q8CPT9|ADDA_STAES RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|27315126|gb|AAO04261.1|AE016746_51 ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC
           12228]
          Length = 1224

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A E
Sbjct: 17  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                K PN   +   R  +          ++ T+H
Sbjct: 77  MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 114

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  HF  + E ++  L+E+     L       +    +   ++  
Sbjct: 115 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 175 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 204


>gi|258406095|ref|YP_003198837.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798322|gb|ACV69259.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 1132

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D       ++  A DP  S  V A AG+GKT +L QR L LL   + P  +L +T T+ 
Sbjct: 1   MDSNLADGKQRSRALDPYTSFIVQAPAGAGKTELLTQRYLVLLAGVSAPEEVLAITFTRK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM +R+   I A     D     +  +    +  ++   + + L   + + P  LK+
Sbjct: 61  AATEMRNRI---IAALQRAGDPTPPDKPHEALTWRLARAVREQDQLLGWELEQAPSRLKI 117

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           QTI + C  + +Q P+ ++  +   I D   +++   EA ++TLA +  +   E      
Sbjct: 118 QTIDSLCAQLTRQMPVLSSFGAAPGIRD--DAREFYREAARNTLAELDNETWSEPLATLL 175

Query: 194 EILEISNDEDIETLISDIISNRTAL 218
             L+ + D+  E L+ D++  R   
Sbjct: 176 AHLDGNTDQ-FEALLVDMLGRRDQW 199


>gi|329730541|gb|EGG66929.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus
           epidermidis VCU144]
          Length = 1218

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A E
Sbjct: 11  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                K PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  HF  + E ++  L+E+     L       +    +   ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198


>gi|219668857|ref|YP_002459292.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2]
 gi|251764522|sp|B8FXD7|ADDA_DESHD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|219539117|gb|ACL20856.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2]
          Length = 1392

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTH 70
           ++    T ++Q  A D      V+A AGSGKT +LVQR+ + +            L +T 
Sbjct: 1   MNNPKWTPAQQ-AAIDLKGQLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTF 59

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TKAAAAEM  R+ + +      + E    E             + + R LL         
Sbjct: 60  TKAAAAEMRERIGKALDEALFGAAEPAQVE------------HLLQQRALLYRA------ 101

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T+H+FC  +++Q+     +   F +ADE ++  L +     TL  +      E   
Sbjct: 102 -SITTLHSFCMELIRQYFYLIELDPAFRVADEAEADLLRQ----DTLEDLFEAYYGEETP 156

Query: 191 AFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           AF  +++    D D + L++ I      L+L  F  S +   + +E
Sbjct: 157 AFQSLVDAFGTDRDDQPLMASI------LRLHEFAMSQVHPGEWLE 196


>gi|89894431|ref|YP_517918.1| hypothetical protein DSY1685 [Desulfitobacterium hafniense Y51]
 gi|122483028|sp|Q24WW8|ADDA_DESHY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|89333879|dbj|BAE83474.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1392

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTH 70
           ++    T ++Q  A D      V+A AGSGKT +LVQR+ + +            L +T 
Sbjct: 1   MNNPKWTPAQQ-AAIDLKGQLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTF 59

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TKAAAAEM  R+ + +      + E    E             + + R LL         
Sbjct: 60  TKAAAAEMRERIGKALDEALFGAAEPAQVE------------HLLQQRALLYRA------ 101

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T+H+FC  +++Q+     +   F +ADE ++  L +     TL  +      E   
Sbjct: 102 -SITTLHSFCMELIRQYFYLIELDPAFRVADEAEADLLRQ----DTLEDLFEAYYGEETP 156

Query: 191 AFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           AF  +++    D D + L++ I      L+L  F  S +   + +E
Sbjct: 157 AFQSLVDAFGTDRDDQPLMASI------LRLHEFAMSQVHPGEWLE 196


>gi|329737718|gb|EGG73961.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus
           epidermidis VCU028]
          Length = 1046

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A E
Sbjct: 11  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                K PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  HF  + E ++  L+E+     L       +    +   ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198


>gi|315148450|gb|EFT92466.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4244]
          Length = 1264

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  K RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPEKRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|116334819|ref|YP_796346.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           brevis ATCC 367]
 gi|122268502|sp|Q03NA7|ADDA_LACBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116100166|gb|ABJ65315.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus
           brevis ATCC 367]
          Length = 1262

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 27/220 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S T S+         +  VSA+AGSGKT +LVQRV+  L        +L +T TKAAAAE
Sbjct: 6   SFTPSQDQAIHQTGNNLLVSASAGSGKTRVLVQRVIERLKTGVGIDQILIVTFTKAAAAE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+              L  E+   QG        S  +   +  L       + T+ 
Sbjct: 66  MRERI-----------QTALRQELAVSQGD-------SAQQQFYLRQLNQLPVADISTLD 107

Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           AFC  ++Q++    ++   F +  DE ++  L +E        +  +++  L   F  + 
Sbjct: 108 AFCLRLLQRYYYVIDLDPVFRLLADETENGLLRDEVWADLREDLYANDDSGL---FARLT 164

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           E  + +  +  ++D++      +   F  +       + +
Sbjct: 165 ENFSGDRNDQGLADLVQ-----QTYTFANATPNPTAWLAE 199


>gi|261405600|ref|YP_003241841.1| recombination helicase AddA [Paenibacillus sp. Y412MC10]
 gi|261282063|gb|ACX64034.1| recombination helicase AddA [Paenibacillus sp. Y412MC10]
          Length = 1373

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 30/221 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAA 75
            +  +    +       V+A AGSGKT +LV+R++R +L +A       LL  T TKAAA
Sbjct: 13  WSDDQWKAIALSGDDMLVAAAAGSGKTAVLVERIIRKILDDAAGFSVDRLLVATFTKAAA 72

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                +   + P+   + +   LL       G   + T
Sbjct: 73  AEMRGRIREAL---------------DRELDRDPDNEHIRRQLALL-------GRASITT 110

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++     +   F I +E ++  + ++  +        +   + +  F  +
Sbjct: 111 LHSFCMEVIRRYYQLIPLDPGFRILNEHEADLMRQDMLEELFEEKYGEVEGDPESRFLRL 170

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +  + E  +  +  ++      +L  F  S+ W    + +
Sbjct: 171 ADWFSGERTDDALYRLVQ-----RLYDFSRSHSWPSHWLRE 206


>gi|313904430|ref|ZP_07837807.1| recombination helicase AddA [Eubacterium cellulosolvens 6]
 gi|313470766|gb|EFR66091.1| recombination helicase AddA [Eubacterium cellulosolvens 6]
          Length = 1236

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 34/221 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  ++ + S       VSA AGSGKT +LV+R+++L++    P     LL +T T+AAA
Sbjct: 5   WTDEQERVISQRNSDLLVSAAAGSGKTAVLVERIMQLVMDPVSPMDIDQLLVVTFTRAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+                A+   +  + P    + +   LL   L       + T
Sbjct: 65  GEMKERI---------------GAKFAALLEEDPENDHLQQQGVLLHHAL-------ITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I  FC  ++Q +     +   + IA+E +   L  +     L     + + E  +     
Sbjct: 103 IDGFCTHVIQNYFQRIGLDPGYRIAEEGELSLLRGQVLDDLLEEEYAEASPEFLRLAQAY 162

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                D  +E +I DI           +  S       + +
Sbjct: 163 APGKTDRALEEMILDI---------YSYAMSDPDPEVWLSE 194


>gi|315658704|ref|ZP_07911574.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis
           M23590]
 gi|315496335|gb|EFU84660.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis
           M23590]
          Length = 1216

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 32/223 (14%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKA 73
           + +  T ++        +   V+A AGSGKT +LV+R++ R++  N     LL +T T  
Sbjct: 7   EGVIWTDAQWQSIYAKGQDVLVAAAAGSGKTAVLVERIIQRIIRDNVDVDRLLVVTFTNL 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +A EM HRV + I   +                + PN + +   R  +          ++
Sbjct: 67  SAREMKHRVEQRIQEAAL---------------EDPNNTHLKNQRIKIHQA-------QI 104

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H+FC  ++QQ     ++  +F  + E ++  L+E+    TL       N +  +   
Sbjct: 105 STLHSFCLKLIQQHYDVLDVDPNFRTSSEAENILLLEQTIDETLEHYYDVLNSDFIELAE 164

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++ +  ND+D  T+I           L +F  +     + + +
Sbjct: 165 QLSKDRNDDDFRTIIKS---------LYYFSIANPNPFEWLTQ 198


>gi|299822108|ref|ZP_07053994.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601]
 gi|299815637|gb|EFI82875.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601]
          Length = 1240

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 33/231 (14%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTL 65
              E  +  + T  +        ++  V+A AGSGKT +LV R++  L           L
Sbjct: 4   SIPEKPESATWTDDQWKAIHASGQNILVAAAAGSGKTAVLVSRIIEKLKDETAGLQVDEL 63

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T A+AAEM  RV                A + K   + P+   + K   LL    
Sbjct: 64  LVVTFTNASAAEMKQRV---------------EAALEKALQEDPDSRHLKKQIALL---- 104

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                  + T+H+FC  ++++F   A+I  +F + +  +S  + +E  ++ L     D  
Sbjct: 105 ---NYASISTLHSFCLDVIRKFYYVADIDPNFRLIEPLESGMIQDEVMEALLERHYGDEE 161

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            E    F+ +++   ++  + ++ DI++     +L  F  +       + +
Sbjct: 162 NER---FFHLVDSFTNDRSDDVLLDILT-----RLYDFSRANPDPVAWLRQ 204


>gi|251810340|ref|ZP_04824813.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251806148|gb|EES58805.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 1224

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A E
Sbjct: 17  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                K PN   +   R  +          ++ T+H
Sbjct: 77  MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 114

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  HF  + E ++  L+E+     L       +    +   ++  
Sbjct: 115 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 175 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 204


>gi|57866488|ref|YP_188146.1| exonuclease RexA [Staphylococcus epidermidis RP62A]
 gi|81675092|sp|Q5HQJ4|ADDA_STAEQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|57637146|gb|AAW53934.1| exonuclease RexA [Staphylococcus epidermidis RP62A]
          Length = 1218

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A E
Sbjct: 11  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                K PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  HF  + E ++  L+E+     L       +    +   ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198


>gi|190570633|ref|YP_001974991.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019116|ref|ZP_03334923.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356905|emb|CAQ54283.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995225|gb|EEB55866.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 1089

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 15/195 (7%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P  S WVSA+AG+GKT IL+ RVLRLLL N     +LCLT T AAA EM  R+   +
Sbjct: 5   AINPNFSVWVSASAGTGKTKILIDRVLRLLLENK--RNILCLTFTNAAANEMEDRIYSTL 62

Query: 87  TAWSHLSDEILSAEITKIQG--KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           + W+   + IL A++ ++     + NK  +++AR L   +     GL +QTIHAFC  ++
Sbjct: 63  SKWAIYPEGILVADLEQLAQCVTRENKDYLTRARRLFSELENL--GLNIQTIHAFCYKLI 120

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
             FP EA I  +  +    + K+L     + TL      +NE ++     I    ++  +
Sbjct: 121 SSFPTEAGIAPNCTL---SECKELHSIIFEKTL------HNETVQDDINIIAAEFDENKL 171

Query: 205 ETLISDIISNRTALK 219
             L+  +   R+AL+
Sbjct: 172 SDLLYTLCIKRSALE 186


>gi|282875534|ref|ZP_06284405.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135]
 gi|281295561|gb|EFA88084.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135]
          Length = 1218

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A E
Sbjct: 11  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                K PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  HF  + E ++  L+E+     L       +    +   ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198


>gi|323466409|gb|ADX70096.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus helveticus
           H10]
          Length = 1204

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 31/222 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK ++   +D      VSA+AGSGKT +LV+RVL+ +LA      LL +T TKAAA
Sbjct: 1   MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +T                                 L   L       + T
Sbjct: 61  EEMKTRIKAALTKEMAKPGVD---------------------YRYLREQLNQIDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I AFC  ++ +F     +   F I  ++    L++E     +   ML + ++  + FY+ 
Sbjct: 100 IDAFCLDVIHRFYYSIELDPSFTILTDDTQAALLKERALREIEGEMLTSKDKAFRHFYD- 158

Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236
              + D D +       S R   L L  F  +    +K + +
Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYNFAMAKPEYKKWLAQ 192


>gi|293368345|ref|ZP_06614973.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291317592|gb|EFE58010.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 1224

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L        LL +T T  +A E
Sbjct: 17  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDEVDVDRLLVVTFTNLSARE 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                K PN   +   R  +          ++ T+H
Sbjct: 77  MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 114

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  HF  + E ++  L+E+     L       +    +   ++  
Sbjct: 115 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 175 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 204


>gi|289551202|ref|YP_003472106.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180734|gb|ADC87979.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis
           HKU09-01]
          Length = 1216

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 32/223 (14%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKA 73
           + +  T ++        +   V+A AGSGKT +LV+R++ R++  N     LL +T T  
Sbjct: 7   EGVIWTDAQWQSIYAKGQDVLVAAAAGSGKTAVLVERIIQRIIRDNVDVDRLLVVTFTNL 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +A EM HRV + I   +                + PN + +   R  +          ++
Sbjct: 67  SAREMKHRVEQRIQEAAL---------------EDPNNTHLKNQRIKIHQA-------QI 104

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H+FC  ++QQ     ++  +F  + E ++  L+E+    TL       N +  +   
Sbjct: 105 STLHSFCLKLIQQHYDVLDVDPNFRTSSEAENILLLEQTIDETLEHYYDVLNSDFIELAE 164

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++ +  ND+D  T+I           L +F  +     + + +
Sbjct: 165 QLSKDRNDDDFRTIIKS---------LYYFSIANPNPFEWLTQ 198


>gi|188586470|ref|YP_001918015.1| recombination helicase AddA [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|251764535|sp|B2A610|ADDA_NATTJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|179351157|gb|ACB85427.1| recombination helicase AddA [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 1282

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 34/221 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAA 75
            T S++ +  +      VSA AG+GKT +LVQR++  L+        + LL +T T+ AA
Sbjct: 12  WTDSQRQVIDENYHHILVSAGAGAGKTAVLVQRIISKLIDPHDDLTVNGLLVVTFTEKAA 71

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+               + E+ K   + P    + K  +LL           + T
Sbjct: 72  NEMRDRI---------------ARELKKALSQDPENDHLKKQLYLL-------NKANIST 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  I++ +    +I   F++A E   + L +    S + + + +     +++FY +
Sbjct: 110 LHSFCLEILRHYFYYLDIDPAFSVASEYDVELLRQ----SVIDNYLEEEYGLGEQSFYLL 165

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++    +  +  +  +I     L L  F  S+   RK ++ 
Sbjct: 166 VDSYGGDKNDEKLKKMI-----LTLHRFSRSHPRPRKWLQS 201


>gi|284124401|ref|ZP_06386963.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3]
 gi|283829217|gb|EFC33632.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3]
          Length = 1180

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 29/207 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +  T S+Q  A +  +   V+A AGSGKT +LV+R L +L      P  ++ +T T+ AA
Sbjct: 1   MQFTPSQQ-DALNIEKHVCVTAGAGSGKTTVLVERYLEILRKGDVGPQNIVAITFTEKAA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  RV+E +    +++D                             +L+      + T
Sbjct: 60  AEMKERVIERLNEAGNITDR--------------------------DNLLDQMSSAYIST 93

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFC  I+++FP  A + ++F+I      K L++E  K TL +I  +  +E +     +
Sbjct: 94  IHAFCSRILREFPFLAKVPANFSILQGIDQKLLLQETLKETLNNIATNAEDEHRPELTHL 153

Query: 196 LEISND-EDIETLISDIISNRTALKLI 221
           L+     + +  + S +I  R  +  +
Sbjct: 154 LQRYGGQKKLVEIFSTMIDKRDIIAKL 180


>gi|329734888|gb|EGG71188.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus
           epidermidis VCU045]
          Length = 1218

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L        LL +T T  +A E
Sbjct: 11  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDEVDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                K PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  HF  + E ++  L+E+     L       +    +   ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198


>gi|260101292|ref|ZP_05751529.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260084877|gb|EEW68997.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 1204

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 31/222 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK ++   +D      VSA+AGSGKT +LV+RVL+ +LA      LL +T TKAAA
Sbjct: 1   MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +T                                 L   L       + T
Sbjct: 61  EEMKTRIKAALTKEMAKPGVD---------------------YRYLREQLNQIDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I AFC  ++ +F     +   F I  ++    L++E     +   ML + ++  + FY+ 
Sbjct: 100 IDAFCLDVIHRFYYSIELDPSFTILTDDTQAALLKERALREIEGEMLTSKDKAFRHFYD- 158

Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236
              + D D +       S R   L L  F  +    +K + +
Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYNFAMAKPEYKKWLAQ 192


>gi|238923931|ref|YP_002937447.1| DNA helicase II [Eubacterium rectale ATCC 33656]
 gi|238875606|gb|ACR75313.1| DNA helicase II [Eubacterium rectale ATCC 33656]
          Length = 1220

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 35/226 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  T  ++ +     R   VSA AGSGKT +LV+R++  +  +  P     +L +T TKA
Sbjct: 3   VKWTSEQKKVIDLRDRDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV               S  I  ++ +KP+  ++ +   L+   L       +
Sbjct: 63  AAAEMRERV---------------SCAIDSLKEQKPDDENLQRQSTLVHNAL-------I 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEELKKAF 192
            TI +FC  ++Q    + N+   F I D+ + K ++++A           ++NE      
Sbjct: 101 TTIDSFCLFVVQNNFAQLNLDPDFRIGDQAELKLMLKDALAQVFEDNYAREDNEAFINLI 160

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
               +  ND  +  ++ DI          +   S  W RK + + L
Sbjct: 161 DTYSKGRNDSAVRQMVEDI---------YYKAGSSSWPRKWMNRLL 197


>gi|315165524|gb|EFU09541.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1302]
          Length = 1271

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 21  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 81  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 181

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 182 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 209


>gi|291613181|ref|YP_003523338.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1]
 gi|291583293|gb|ADE10951.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1]
          Length = 1134

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 2/194 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            LA DP  S  V A AGSGKT +LV R++RLLL  A PS +L +T T+ AA EM  R+  
Sbjct: 4   QLALDPKHSIVVEACAGSGKTWLLVSRIVRLLLDGAQPSQILAITFTRKAAQEMQARLQL 63

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   +   D  +     +   +  ++S + +AR L  ++L    G+ + T H +   +M
Sbjct: 64  WLRDLAMADDAAVRKFFAERGLESLSESQLQRARSLYGSVLLAQPGITISTFHGWFMQVM 123

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           Q+ PL A++    ++ +   S+   EEA +  L  +    +  L +    +       + 
Sbjct: 124 QRAPLNADVMLGMSLLERAGSE--QEEAWEELLEQMRKQPDGALAQYMQWLFGECGLFNT 181

Query: 205 ETLISDIISNRTAL 218
             L+ + +  R   
Sbjct: 182 RKLLFNFLGKRAEW 195


>gi|256618697|ref|ZP_05475543.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200]
 gi|257089525|ref|ZP_05583886.1| exonuclease rexA [Enterococcus faecalis CH188]
 gi|256598224|gb|EEU17400.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200]
 gi|256998337|gb|EEU84857.1| exonuclease rexA [Enterococcus faecalis CH188]
 gi|315577474|gb|EFU89665.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0630]
          Length = 1264

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|307288582|ref|ZP_07568566.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109]
 gi|306500489|gb|EFM69822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109]
          Length = 1264

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|161507624|ref|YP_001577578.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC
           4571]
 gi|251764556|sp|A8YVK0|ADDA_LACH4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|160348613|gb|ABX27287.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC
           4571]
          Length = 1204

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 31/222 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   TK ++   +D      VSA+AGSGKT +LV+RVL+ +LA      LL +T TKAAA
Sbjct: 1   MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +T                                 L   L       + T
Sbjct: 61  EEMKTRIKAALTKEMAKPGVD---------------------YRYLREQLNQIDTANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           I AFC  ++ +F     +   F I  D+ Q+  L E A +     ++   ++  +  +  
Sbjct: 100 IDAFCLDVIHRFYYSIELDPSFTILTDDTQATLLKERALREIEGEMLTSKDKAFRHFYDN 159

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                + +    L+ D         L  F  +    +K + +
Sbjct: 160 FAGDRDADSPRDLLLD---------LYNFAMAKPEYKKWLAQ 192


>gi|257418942|ref|ZP_05595936.1| UvrD/REP helicase [Enterococcus faecalis T11]
 gi|257160770|gb|EEU90730.1| UvrD/REP helicase [Enterococcus faecalis T11]
          Length = 1264

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|257078036|ref|ZP_05572397.1| UvrD/REP helicase [Enterococcus faecalis JH1]
 gi|294780984|ref|ZP_06746336.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1]
 gi|256986066|gb|EEU73368.1| UvrD/REP helicase [Enterococcus faecalis JH1]
 gi|294451930|gb|EFG20380.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1]
 gi|315031591|gb|EFT43523.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0017]
 gi|315034967|gb|EFT46899.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0027]
 gi|323480352|gb|ADX79791.1| recombination helicase AddA [Enterococcus faecalis 62]
          Length = 1264

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|312903646|ref|ZP_07762822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635]
 gi|310632999|gb|EFQ16282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635]
          Length = 1264

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTKLI---------FSFYEFAKANPDPEAWI 202


>gi|307268773|ref|ZP_07550141.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248]
 gi|306514901|gb|EFM83448.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248]
          Length = 1264

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|82701856|ref|YP_411422.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196]
 gi|82409921|gb|ABB74030.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosospira
           multiformis ATCC 25196]
          Length = 1196

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 11/209 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   ++E+  A DP  S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAA
Sbjct: 14  VPPDEAERRQALDPACSFIVQAPAGSGKTGLLIQRYLKLLACVEEPEEVVAITFTRKAAA 73

Query: 77  EMSHRVLEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           EM  R++  + +      S  + E       +   +    + + +       + + P  L
Sbjct: 74  EMRQRLVAALASAQKAAHSSGAQEAEQESKHEKTTRTLAHAVLRRDAEACWRLADHPARL 133

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           ++QT  + C ++ +Q P+ +         D   +  L  EA ++TLA  +LD ++ + + 
Sbjct: 134 RIQTFDSLCASLTRQMPVLSGFGGQPETVD--DASDLYLEAARATLA--LLDGDDAVAED 189

Query: 192 FYEILEISNDE--DIETLISDIISNRTAL 218
              +LE  +++   IE L+ +I++ R   
Sbjct: 190 VECLLEHLDNDIGRIEKLLVEILALRDHW 218


>gi|329576396|gb|EGG57909.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1467]
          Length = 1264

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|312899588|ref|ZP_07758914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470]
 gi|311293267|gb|EFQ71823.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470]
          Length = 1264

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|227518367|ref|ZP_03948416.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus
           faecalis TX0104]
 gi|227074045|gb|EEI12008.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus
           faecalis TX0104]
          Length = 708

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197
           FC  ++++F    +I   F +  +E    L++E     L       N+E   AFY++   
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            SND   + L + I S         F  +       I
Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202


>gi|256958610|ref|ZP_05562781.1| UvrD/REP helicase [Enterococcus faecalis DS5]
 gi|256949106|gb|EEU65738.1| UvrD/REP helicase [Enterococcus faecalis DS5]
          Length = 1264

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|256762121|ref|ZP_05502701.1| exonuclease RexA [Enterococcus faecalis T3]
 gi|257086468|ref|ZP_05580829.1| UvrD/REP helicase [Enterococcus faecalis D6]
 gi|256683372|gb|EEU23067.1| exonuclease RexA [Enterococcus faecalis T3]
 gi|256994498|gb|EEU81800.1| UvrD/REP helicase [Enterococcus faecalis D6]
 gi|315028070|gb|EFT40002.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2137]
          Length = 1264

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|257415727|ref|ZP_05592721.1| UvrD/REP helicase [Enterococcus faecalis AR01/DG]
 gi|257157555|gb|EEU87515.1| UvrD/REP helicase [Enterococcus faecalis ARO1/DG]
          Length = 1264

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|255976207|ref|ZP_05426793.1| exonuclease RexA [Enterococcus faecalis T2]
 gi|307278851|ref|ZP_07559914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860]
 gi|255969079|gb|EET99701.1| exonuclease RexA [Enterococcus faecalis T2]
 gi|306504522|gb|EFM73729.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860]
          Length = 1264

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     +Q     + D  + RH    I   P    + T+HA
Sbjct: 74  KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|313622690|gb|EFR93052.1| ATP-dependent nuclease subunit A [Listeria innocua FSL J1-023]
          Length = 1235

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 33/223 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQANGNNILVAAAAGSGKTAVLVTRIIEKLINETENLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM +R+ + +                +   + P  + + K   LL           + T
Sbjct: 74  AEMKYRIGKSL---------------EEALMQNPESAHLKKQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  I+++   EA+I  +F + +  +S  + +E  +  L       N E   AF+ +
Sbjct: 112 LHSFCLEIIRKHYFEADIDPNFRLIEPIESGMIRDEVLEDLLEKEYSIENNE---AFFHL 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +E    +  +  +  +IS     KL  F  +       +E+ +
Sbjct: 169 VESFTGDRSDAELHMMIS-----KLYDFSRANPNPDLWLEQMV 206


>gi|293115645|ref|ZP_06604556.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876]
 gi|292809250|gb|EFF68455.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876]
          Length = 1187

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 34/224 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
           + + T  +Q    +   +  VSA AGSGKT +LV+R++  +    +P     ++ +T TK
Sbjct: 14  MSNWTSEQQTAIYERNCNLLVSAAAGSGKTAVLVERIVSRVFDERNPVDIDRIVIVTFTK 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +AA EM  R+ +              A                      I  +      K
Sbjct: 74  SAAGEMKERLTKRFEDILKADCGNRRA----------------------IRQIALINHAK 111

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +FC  I++ +         + IAD+ +++ + E+     L   + +N+E L  A 
Sbjct: 112 ITTIDSFCSYILKNYYNTIGYEPSYRIADKGETELIKEDVYNELLEERLKNNDENLITAI 171

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +      +I          KL     S+ W ++ +  
Sbjct: 172 NSLTQGKSIAPFFDIIK---------KLYDASESHPWPKEWLSD 206


>gi|315150316|gb|EFT94332.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0012]
          Length = 1264

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                       N+    + R      +       + T+HA
Sbjct: 74  KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYRLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|256962291|ref|ZP_05566462.1| UvrD/REP helicase [Enterococcus faecalis Merz96]
 gi|293383320|ref|ZP_06629235.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712]
 gi|293387523|ref|ZP_06632072.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613]
 gi|312905827|ref|ZP_07764847.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512]
 gi|312909118|ref|ZP_07767977.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516]
 gi|256952787|gb|EEU69419.1| UvrD/REP helicase [Enterococcus faecalis Merz96]
 gi|291079343|gb|EFE16707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712]
 gi|291083033|gb|EFE19996.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613]
 gi|310628166|gb|EFQ11449.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512]
 gi|311290542|gb|EFQ69098.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516]
          Length = 1264

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                       N+    + R      +       + T+HA
Sbjct: 74  KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|223042879|ref|ZP_03612927.1| recombination helicase AddA [Staphylococcus capitis SK14]
 gi|222443733|gb|EEE49830.1| recombination helicase AddA [Staphylococcus capitis SK14]
          Length = 1218

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  N     LL +T T  +A E
Sbjct: 11  WTDAQWRSIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDNMDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                 +P    +   R  +          ++ T+H
Sbjct: 71  MKHRVDQRIQEASL---------------AEPENEHLKNQRVKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  +F  + E ++  L+++     L       + +  +   ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENVLLLDQTIDDVLERHYDILDSDFIELTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+    +I          +L FF  +     + +++
Sbjct: 169 DRNDDQFRNIIK---------RLYFFSIANPNPFEWLDQ 198


>gi|242242257|ref|ZP_04796702.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           W23144]
 gi|242234273|gb|EES36585.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           W23144]
          Length = 1218

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  +     LL +T T  +A E
Sbjct: 11  WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV   I   S                K PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVDIRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  HF  + E ++  L+E+     L       +    +   ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+   ++I          +L FF  +     + + +
Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198


>gi|315030721|gb|EFT42653.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4000]
          Length = 1271

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 21  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                       N+    + R      +       + T+HA
Sbjct: 81  KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 121

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 181

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 182 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 209


>gi|256851163|ref|ZP_05556552.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN]
 gi|260660587|ref|ZP_05861502.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN]
 gi|282934629|ref|ZP_06339872.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
 gi|297206028|ref|ZP_06923423.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16]
 gi|256616225|gb|EEU21413.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN]
 gi|260548309|gb|EEX24284.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN]
 gi|281301204|gb|EFA93505.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
 gi|297149154|gb|EFH29452.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16]
          Length = 1186

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 24/199 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++ TK ++   +   +   VSA+AGSGKT +L +RV++L+        LL +T TKAAA
Sbjct: 1   MVNYTKEQEAAINTRGKDILVSASAGSGKTMVLAERVIKLIKNGTSLDNLLVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+  ++                       N          L   L       + T
Sbjct: 61  NEMKERIKRVL-----------------------NDEIAKNNSRKLKRELLRAEVANIST 97

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++ +F     +   F++  +E    L++E     L      + +   + FY+ 
Sbjct: 98  IDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFASPDNPYRVFYDN 157

Query: 196 LEISND-EDIETLISDIIS 213
                D      L+ D+ +
Sbjct: 158 FAGDRDANGARELLLDLYN 176


>gi|163790443|ref|ZP_02184874.1| exonuclease RexA [Carnobacterium sp. AT7]
 gi|159874347|gb|EDP68420.1| exonuclease RexA [Carnobacterium sp. AT7]
          Length = 1267

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     +   +  VSA+AGSGKT +LVQRV+  + A  +   +L +T+T+AAA EM
Sbjct: 14  FTDGQWQAIYEEGHNILVSASAGSGKTTVLVQRVIEKIKAGTNVDEMLIVTYTEAAAKEM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     IQ    ++SDM   RHL    +       + T+HA
Sbjct: 74  KARIQ------------------VAIQESVTSESDMELKRHL-TRQVTLINQASISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    N+   F +  +E    L++E+    +   +    + L   F  +   
Sbjct: 115 FCLQVIRRYYYLINLDPIFRLLTDETEILLLKESVWEDVREELYGEEDTL---FKSLTAS 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +++  +  ++D+I       L  F  +       +E+
Sbjct: 172 YSNDRSDAGLTDLI-----FSLYEFSRANPRPEAWLEQ 204


>gi|257085626|ref|ZP_05579987.1| UvrD/REP helicase [Enterococcus faecalis Fly1]
 gi|256993656|gb|EEU80958.1| UvrD/REP helicase [Enterococcus faecalis Fly1]
          Length = 1264

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                       N+    + R      +       + T+HA
Sbjct: 74  KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|229546208|ref|ZP_04434933.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           TX1322]
 gi|256852763|ref|ZP_05558133.1| exonuclease RexA [Enterococcus faecalis T8]
 gi|307291096|ref|ZP_07570981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411]
 gi|229308732|gb|EEN74719.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
           TX1322]
 gi|256711222|gb|EEU26260.1| exonuclease RexA [Enterococcus faecalis T8]
 gi|306497750|gb|EFM67282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411]
          Length = 1264

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+     D   +  VSA+AGSGKT +LV+RV+  + +      LL +T+T+AAA EM
Sbjct: 14  FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                       N+    + R      +       + T+HA
Sbjct: 74  KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++++F    +I   F +  DE ++  L E+   +       +N EE  +       
Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +D+ +  LI              F  +       I
Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202


>gi|113868365|ref|YP_726854.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia
           eutropha H16]
 gi|113527141|emb|CAJ93486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia
           eutropha H16]
          Length = 1200

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 7/217 (3%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           +   +Q   E +     T      A DP RS  V A AGSGKT +LV R++RLLLA A P
Sbjct: 8   HVQPYQRDGEPVSEAEFT----RAACDPARSVVVEACAGSGKTWLLVARLVRLLLAGAAP 63

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLL 121
             +L +T T+ AA EM  R+LE++   S  SDE + A +  +       +  + +AR L 
Sbjct: 64  HEILAITFTRKAAEEMRDRLLEVLAQMSRDSDEDVVAALVQRGLTHDAAREALPRARRLH 123

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
             +L  PG + + T H +   +++  PL + I    A+   E + ++  EA      ++ 
Sbjct: 124 AQVLAAPGRMAIDTFHGWFGTLLRGAPLASGIVPGAAL--REDALRMKREAWAPVWRALA 181

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
            +   +L+ A+  +++   D     L+  +   R+  
Sbjct: 182 TEQYTDLRAAWETLVDTVGDFQARALLDAMFHARSEW 218


>gi|42520239|ref|NP_966154.1| UvrD/Rep/AddA family helicase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409977|gb|AAS14088.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 1089

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 24/202 (11%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P  S WV+A+AG+GKT IL+ RVLRLLL N     +LCLT T AAA EM +R+  I+
Sbjct: 21  AINPNFSVWVNASAGTGKTKILIDRVLRLLLENK--RNILCLTFTNAAANEMENRIHSIL 78

Query: 87  TAWSHLSDEILSAEITKIQ-----------GKKPNKSDMSKARHLLITILETPGGLKVQT 135
           + W+  SD +L+A++ ++            G + NK  +++AR L   +     GL +QT
Sbjct: 79  SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSRKNKDYLTRARRLFSELENL--GLTIQT 136

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFC  ++  FP+EA I  +  +    + K+L        L      +NE ++     I
Sbjct: 137 IHAFCYKLISSFPIEAGIAPNCTL---SECKELHSIIFNKVL------HNETVQDDINLI 187

Query: 196 LEISNDEDIETLISDIISNRTA 217
               ++  +  L+  +   R+A
Sbjct: 188 ATEIDENKLRDLLYTLCVKRSA 209


>gi|323341189|ref|ZP_08081436.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644]
 gi|323091383|gb|EFZ34008.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644]
          Length = 1244

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 29/219 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T+ +     +      VSA+AGSGKT +LV+RV+  +        LL LT T+AAA EM
Sbjct: 5   FTQGQSQAIHESGHDILVSASAGSGKTRVLVERVVDKIKHGIDVDRLLILTFTEAAAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + +    + +++                      +  LI  L       + TI A
Sbjct: 65  KERIQKALREACNQTED-------------------EHQKGFLINQLVKLNTADISTIDA 105

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYEILE 197
           FC   +Q +  +A++   F +  ++  K+L+ E      L  +   ++ +  +       
Sbjct: 106 FCLKFIQNYYYKASLDPSFRLLTDQTEKRLLREDVLNDLLEKLYGQDDADFIELAENFSN 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             +D+ +  LI         +++  F          I+ 
Sbjct: 166 DRSDDGLTELI---------MRVFDFANVNPDPENWIKS 195


>gi|254992021|ref|ZP_05274211.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL
           J2-064]
          Length = 541

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 233 WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 292

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +   + P+ + + +   LL           + T
Sbjct: 293 AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 330

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  +A+I  +F + +  +S  + +E  ++ L     ++NNE        
Sbjct: 331 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 390

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++  LIS         KL  F  +       +E+ +
Sbjct: 391 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 425


>gi|217963572|ref|YP_002349250.1| recombination helicase AddA [Listeria monocytogenes HCC23]
 gi|251764533|sp|B8DF44|ADDA_LISMH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|217332842|gb|ACK38636.1| recombination helicase AddA [Listeria monocytogenes HCC23]
 gi|307571852|emb|CAR85031.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes L99]
          Length = 1235

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R+++ L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIKKLIDESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +  G+ P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  EA+I   F + +  +S  + +E  +  L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++ +LIS         KL  F  +       +E  +
Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206


>gi|291532505|emb|CBL05618.1| recombination helicase AddA, Firmicutes type [Megamonas hypermegale
           ART12/1]
          Length = 1001

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 37/222 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           +  +  +Q   +   ++  V+A AGSGKT +LV+RV++ ++      + +L +T T AAA
Sbjct: 1   MPWSAQQQQAINTYDKNILVAAAAGSGKTSVLVERVIQRIVNKTCDINQILVVTFTNAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+   IT                   +K +  D  +   LL           + T
Sbjct: 61  AEMRERIASAIT-------------------EKLSDKDKERQLVLL-------NASSIST 94

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYE 194
           +HAFC+ I++Q+  +  +   F +A+ ++ + L    K   L  +   N + +  + F E
Sbjct: 95  LHAFCQNIIRQYFHQLGLDPKFRLANPQEIELL----KLDVLEELFETNYDKDDNEDFLE 150

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             +   +E  +    DII     LKL  +  S  +  + ++ 
Sbjct: 151 FTDTYGNERGDDSTYDII-----LKLYEYSRSQPFPLQWLKA 187


>gi|162146539|ref|YP_001600998.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785114|emb|CAP54658.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1184

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 27/241 (11%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--------- 64
           +D I    + Q  ASDP  S +VSA+AGSGKT +L+ R+LRL+L    P+          
Sbjct: 4   LDAIGLANARQGEASDPGASVFVSASAGSGKTKLLIDRLLRLMLPRPAPTRGGTGRGTCL 63

Query: 65  -------LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
                  + CLT TKAAAAEM+ R+ +      + +  +     T +      + D  + 
Sbjct: 64  RGRTRRAIQCLTFTKAAAAEMAIRLQKPAGELGNAARRVPGPG-TGLPVGPAVRGDTPRG 122

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             +   +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + ++  ++  + E+ ++ +
Sbjct: 123 TRMFARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEDTDARIAMGESVEAVV 182

Query: 178 ASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                        A   +       D   LI  + +    L+ +         R  IE +
Sbjct: 183 GG--------GGPAVAILASQIGAGDFAALIGGLQARLRQLQPVITALEQD--RAAIEAA 232

Query: 238 L 238
           L
Sbjct: 233 L 233


>gi|330684454|gb|EGG96177.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus
           epidermidis VCU121]
          Length = 1220

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L        LL +T T  +A E
Sbjct: 11  WTDAQWRSIYAKGQDTLVAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                + PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVNQRIQQASI---------------EDPNNEHLKNQRIKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  +F  + E ++  L+E+     L      + ++L   F ++ E
Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDEVLEQ----HYDKLNPDFIDLTE 164

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             +++  +T   ++I      +L FF  +     + + +
Sbjct: 165 QLSNDRSDTQFRNMIK-----QLYFFSIANPDPFEWLNQ 198


>gi|315640911|ref|ZP_07896007.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus
           DSM 15952]
 gi|315483329|gb|EFU73829.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus
           DSM 15952]
          Length = 1226

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 94/218 (43%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     +      VSA+AGSGKT ILVQRV+  L    +   LL +T T+AAA EM
Sbjct: 12  FTDDQWQAIFETDHHLLVSASAGSGKTRILVQRVIEKLKNGVNIDELLVVTFTEAAAREM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                 E+ K   +  +++ +   R  L  +       ++ T+H+
Sbjct: 72  KQRI---------------ETELHKTIQQARSEAMIQHFRKQLTLLPM----AQISTLHS 112

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++     +   F +  +E    LI+E        +M +  +  +  F+++L+ 
Sbjct: 113 FCLKVIRRYYYLVELDPGFRLLTDETEALLIQE---DVWNELMEEEYDASRPEFFQLLQN 169

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            + +  +  ++++I     L++  F  +       + K
Sbjct: 170 FSSDRSDEPVTEMI-----LRVFQFSRANPQPDVWLRK 202


>gi|87161998|ref|YP_493570.1| exonuclease RexA [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509167|ref|YP_001574826.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|262049318|ref|ZP_06022192.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30]
 gi|284023894|ref|ZP_06378292.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 132]
 gi|294847955|ref|ZP_06788702.1| recombination helicase AddA [Staphylococcus aureus A9754]
 gi|123486587|sp|Q2FIA8|ADDA_STAA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764539|sp|A8Z073|ADDA_STAAT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|87127972|gb|ABD22486.1| exonuclease RexA [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160367976|gb|ABX28947.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|259162550|gb|EEW47118.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30]
 gi|294824755|gb|EFG41177.1| recombination helicase AddA [Staphylococcus aureus A9754]
 gi|315197320|gb|EFU27658.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320143273|gb|EFW35063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1217

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +    +  +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPKNWLDQ 199


>gi|171463387|ref|YP_001797500.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171192925|gb|ACB43886.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 1173

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 10/196 (5%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A DP RS  VSA AGSGKT  LV R++RLLL +  P  +L LT T+ AA EM  R+  ++
Sbjct: 15  ACDPQRSVIVSACAGSGKTWSLVARMVRLLLDDVKPQEILALTFTRKAAQEMRDRLYGML 74

Query: 87  TAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
             +S + D  L  E+  +   K   +  + KA+ L   +L  P  + + T H +   ++ 
Sbjct: 75  EQFSKIDDASLIKELIARGMEKAQAEKYLPKAKALYEQVLANPQPIVIDTFHGWFGRLLG 134

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             P+   I   F +   E +K+L  E        +      ELK  +  +L+     + +
Sbjct: 135 AAPVSLGIQPGFKL--REDAKRLQAECLDDWWGDLT----PELKVHYDILLKYLGSHETQ 188

Query: 206 TLI---SDIISNRTAL 218
            L+   S +   R A 
Sbjct: 189 KLLMGKSSLFKQRGAW 204


>gi|260583800|ref|ZP_05851548.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC
           700633]
 gi|260158426|gb|EEW93494.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC
           700633]
          Length = 1244

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 29/222 (13%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +  T  +         +  VSA+AGSGKT +LV R++  +    +  +LL +T T+AA
Sbjct: 7   EGVQATPEQWQAIWQRGDNLLVSASAGSGKTKVLVDRIMGYIEDGVNIDSLLIVTFTEAA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +        +I                     +H+ I  L       + 
Sbjct: 67  AKEMKERLRTNLEKAITKETDITK-------------------KHMYIKQLSLLPNATIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+FC  +++++   + +   F++ +E +   L E+  ++ +   +L+ +  +      
Sbjct: 108 TIHSFCMKVIRRYFYLSQLDPVFSLLNEVEGTLLKEKVWRN-IQDELLEEHSWMDGLMRY 166

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                ND+   TL+          +L  F  S    ++ I  
Sbjct: 167 FSSDRNDDGFTTLVY---------QLYDFSRSKPNPKQWISS 199


>gi|326202081|ref|ZP_08191951.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium
           papyrosolvens DSM 2782]
 gi|325987876|gb|EGD48702.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium
           papyrosolvens DSM 2782]
          Length = 1247

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 32/223 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            TK +    +    +  V+A AG+GKT +LV+R++R +     P    +LL +T T AAA
Sbjct: 6   WTKEQYAAITQKDCNLLVAAAAGAGKTAVLVERIIRKITDAETPVDIDSLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+                A I+    K    +++S+   LL           + T
Sbjct: 66  TEMRERI---------------GAAISDSIEKNQGSNNISRQLVLL-------NKASITT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++       I   F I DE ++  L  E        I  D   E  + F+++
Sbjct: 104 IHSFCLEVIRSNFQSIEIDPTFKILDETEATLLKSETLSELFEEIYEDV--EGNEDFFDL 161

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           LE       +  I +++     L +  F  SY W  K +E+ +
Sbjct: 162 LESYGSNRDDEKIQEMV-----LNIYSFVQSYPWPEKWLEQQV 199


>gi|320141216|gb|EFW33063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1217

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +    +  +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPKNWLDQ 199


>gi|225174781|ref|ZP_03728779.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1]
 gi|225169908|gb|EEG78704.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1]
          Length = 1229

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 35/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +         +  VSA AG+GKT +LV+R++RLL    +P     LL +T T+AAA
Sbjct: 5   WTDEQLEAIETTGCNLLVSAAAGAGKTAVLVERIIRLLCHEENPLDIDRLLVVTFTEAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+   +                  +     + D+++   L+        G  + T
Sbjct: 65  AEMRERISAAMEE----------------KIAHSGRGDLARQLSLV-------NGASIST 101

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  I++++    ++   F +ADE +++ L ++     L       +     AF+E+
Sbjct: 102 LHSFCLDIIRRYFYLLDMDPGFRVADEREAQMLQQQVLDQLLEDAFQSGDA----AFHEL 157

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 +  +  +  +I     L+L  + +S  W R+ + ++  + 
Sbjct: 158 AHRYGGKTADEGLGRLI-----LRLYRYTWSNPWPRQWLAEAATAF 198


>gi|258424346|ref|ZP_05687226.1| recombination helicase AddA [Staphylococcus aureus A9635]
 gi|257845359|gb|EEV69393.1| recombination helicase AddA [Staphylococcus aureus A9635]
          Length = 1217

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTFH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPDPTNWLDQ 199


>gi|224476068|ref|YP_002633674.1| putative ATP-dependent nuclease subunit A [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|251764540|sp|B9DIS2|ADDA_STACT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|222420675|emb|CAL27489.1| putative ATP-dependent nuclease, subunit A [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 1220

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T  +        +   V+A AGSGKT +LV+R++ R+L        LL +T T  +A E
Sbjct: 11  WTDDQWKSIYAKGQDTLVAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I                K   + P+ + +   R  +          ++ T+H
Sbjct: 71  MKHRVEKRI---------------QKASLEDPSNTHLKNQRVKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  +F  + E ++  L+E+     L     + N        ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDEVLEKYYAELNPAFIDLSEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             +DE +  +I  +          +F  +     + ++ 
Sbjct: 169 DRSDERLRQIIKSV---------YYFAVANPQPEQWLKS 198


>gi|260887200|ref|ZP_05898463.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185]
 gi|330839034|ref|YP_004413614.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185]
 gi|260863262|gb|EEX77762.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185]
 gi|329746798|gb|AEC00155.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185]
          Length = 1251

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 32/228 (14%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           D    + ++     +  ++  V+A AGSGKT +LV+R++R +L        LL +T T A
Sbjct: 3   DARKWSAAQLRAIEERGKNLLVAAAAGSGKTSVLVERIIRRILQGETDVDRLLVVTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+                A + +   K      + +   LL           +
Sbjct: 63  AAAEMRERI---------------EAALAQEIAKGTASPKLERQLALL-------SNASI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+HAFC+ ++++     ++   F +A+E++ + L + A    L  +     +E ++ F 
Sbjct: 101 STLHAFCQNVIRRNFSVIDLDPKFRLANEQERRLLQQNA----LEEVFEKKYDEAQEDFL 156

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                   E  +  +  ++     L+L  F  S  +  + ++    S 
Sbjct: 157 SFAAAYGTEHGDEALYAMV-----LRLYAFSCSQPFPSRWLDSLAESF 199


>gi|284802713|ref|YP_003414578.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578]
 gi|284995855|ref|YP_003417623.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923]
 gi|284058275|gb|ADB69216.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578]
 gi|284061322|gb|ADB72261.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923]
          Length = 1235

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +  G+ P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  EA+I   F + +  +S  + +E  +  L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++ +LIS         KL  F  +       +E  +
Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206


>gi|16804306|ref|NP_465791.1| hypothetical protein lmo2267 [Listeria monocytogenes EGD-e]
 gi|224500935|ref|ZP_03669242.1| hypothetical protein LmonFR_00190 [Listeria monocytogenes FSL
           R2-561]
 gi|81592702|sp|Q8Y511|ADDA_LISMO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|16411737|emb|CAD00345.1| lmo2267 [Listeria monocytogenes EGD-e]
          Length = 1235

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +  G+ P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  EA+I   F + +  +S  + +E  +  L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++ +LIS         KL  F  +       +E  +
Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206


>gi|254831297|ref|ZP_05235952.1| hypothetical protein Lmon1_08062 [Listeria monocytogenes 10403S]
          Length = 1235

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +  G+ P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  EA+I   F + +  +S  + +E  +  L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++ +LIS         KL  F  +       +E  +
Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206


>gi|237807125|ref|YP_002891565.1| DNA helicase II [Tolumonas auensis DSM 9187]
 gi|237499386|gb|ACQ91979.1| DNA helicase II [Tolumonas auensis DSM 9187]
          Length = 729

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 41/198 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A  P ++  V A AGSGKT +LV R+  LL +    P ++L 
Sbjct: 2   DISHLLDGLNDKQRDVVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLLQIEQVSPHSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+  ++                                         
Sbjct: 60  VTFTNKAAAEMRGRIERLLGNSLGFGR--------------------------------- 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++  PL+AN+   F I D +   +L+    K  L ++ LD  + 
Sbjct: 87  -GGMWIGTFHGLAHRLLRAHPLDANLPEDFQIIDSDDQLRLL----KRILRNLNLDEKQW 141

Query: 188 LKKAFYEILEISNDEDIE 205
           + +A    +    DE + 
Sbjct: 142 VPRAVAGYINSKKDEGLR 159


>gi|169826779|ref|YP_001696937.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41]
 gi|251764534|sp|B1HN90|ADDA_LYSSC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|168991267|gb|ACA38807.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41]
          Length = 1238

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 26/218 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +S T  +        +   VSA AGSGKT +L+ R++  ++A  +P     LL +T T A
Sbjct: 12  VSWTDDQWKAIYASGQDTLVSAAAGSGKTAVLINRMIEKVIATDNPINVDELLVVTFTNA 71

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +AAEM HR               +S  + K   + P  S + +   L+          ++
Sbjct: 72  SAAEMRHR---------------MSEALEKAIVENPTSSHLRRQLSLI-------NKAQI 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H+FC AI++Q+    +I   F IA+E +   L ++     L        E   +A Y
Sbjct: 110 STLHSFCLAIVKQYAYLLDIDPGFRIANEAEVALLRDDIVADVLEGAYDSEEETQVQAIY 169

Query: 194 EILEISNDEDIETLISDIISN-RTALKLIFFFFSYLWR 230
            +++    +  +  I  +IS      ++      +LW 
Sbjct: 170 RLVDSFTSDRDDQAIETLISKLYDTSRVHAEPQRWLWS 207


>gi|323489925|ref|ZP_08095147.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2]
 gi|323396432|gb|EGA89256.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2]
          Length = 1202

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 33/222 (14%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  + +      +   VSA AGSGKT +L+ R++  +LA   P     LL +T T A+
Sbjct: 10  TWTDEQWMAIWAKGQDMLVSAAAGSGKTAVLINRMIEKVLAEDDPISVDELLVVTFTNAS 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM HR               +S  + K   + P+ S + K   L+          ++ 
Sbjct: 70  AAEMRHR---------------MSKALEKAVAENPDSSHLRKQLRLI-------NKAQIS 107

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  +++Q+     I   F IA E ++  L ++  ++ L S       E   A Y 
Sbjct: 108 TLHSFCLQVVKQYAYLLEIDPGFRIAGETEAALLRDDVLEAVLESAYEG---EGADAVYR 164

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + +    +  +  +  ++S     KL  +   +   ++ +++
Sbjct: 165 LADSFTSDRSDQAMEVLLS-----KLYDYSRVHPNPQEWLQQ 201


>gi|47097165|ref|ZP_00234731.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899032|ref|ZP_05258956.1| hypothetical protein LmonJ_04449 [Listeria monocytogenes J0161]
 gi|254912827|ref|ZP_05262839.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
 gi|254937154|ref|ZP_05268851.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
 gi|47014470|gb|EAL05437.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609758|gb|EEW22366.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
 gi|293590824|gb|EFF99158.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
          Length = 1235

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +  G+ P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  EA+I   F + +  +S  + +E  +  L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++ +LIS         KL  F  +       +E  +
Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206


>gi|224499009|ref|ZP_03667358.1| hypothetical protein LmonF1_04628 [Listeria monocytogenes Finland
           1988]
 gi|254826845|ref|ZP_05231532.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165]
 gi|258599223|gb|EEW12548.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165]
          Length = 1235

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +  G+ P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  EA+I   F + +  +S  + +E  +  L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++ +LIS         KL  F  +       +E  +
Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206


>gi|192360802|ref|YP_001982657.1| UvrD/REP helicase domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190686967|gb|ACE84645.1| UvrD/REP helicase domain protein [Cellvibrio japonicus Ueda107]
          Length = 1163

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             +  +L A DP RS  VSA AGSGKT +L QRVL+LL     P  +L +T T+ AA EM
Sbjct: 15  PDQDIRLAAIDPERSFAVSAPAGSGKTGLLTQRVLQLLAHCEQPEEILAITFTRKAAGEM 74

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   + A     DE    +    +  +  ++ + +       +L +P  L++ TI +
Sbjct: 75  QDRI---LHALWQAQDEPEPNDPHARRTWRLAQAALKRDSEFGWQLLHSPQRLRITTIDS 131

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C AI QQ PL + + +     ++ +       A +     +  D    L++    +L  
Sbjct: 132 LCRAITQQLPLASGLGAQPDTLEQPEQA--YRLAVRELFKQL--DKESPLREHLARLLRH 187

Query: 199 SND--EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            ++  + +E L++++++ R           +   R   E+ L  +
Sbjct: 188 LDNNLQTVEDLLANLLAKREQWLHPLLMARHQQARPYFEQVLQDL 232


>gi|317128676|ref|YP_004094958.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522]
 gi|315473624|gb|ADU30227.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522]
          Length = 1242

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 31/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T  +         +  V+A AGSGKT +LV+R++R ++  N     LL +T T AAAAE
Sbjct: 12  WTDDQWKAIDASGNNILVAAAAGSGKTAVLVERIIRKIVNHNVDVDQLLIVTFTNAAAAE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HR+ +                I K     P    + +   LL           + T+H
Sbjct: 72  MRHRIGD---------------AIEKQLKDDPTSLHLRRQLTLL-------NRANISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++QF    +I   F + D  + + + EE  +        + N      F+ +++
Sbjct: 110 SFCMKVVRQFYYVVDIDPSFRLLDTTEGELIREEILEELFEEEYGNENNH---EFFHVVD 166

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +  +  +I      KL  F  S+      +++
Sbjct: 167 SYSGDRSDEPLRQLIR-----KLYDFSRSHPDPNAWLDE 200


>gi|153938269|ref|YP_001389808.1| recombination helicase AddA [Clostridium botulinum F str.
           Langeland]
 gi|251764514|sp|A7GAJ8|ADDA_CLOBL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|152934165|gb|ABS39663.1| recombination helicase AddA [Clostridium botulinum F str.
           Langeland]
 gi|295317895|gb|ADF98272.1| recombination helicase AddA [Clostridium botulinum F str. 230613]
          Length = 1279

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 35/224 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T  ++        +  V A AG+GKT +LVQR++  +L    P     LL +T 
Sbjct: 1   MSGTKWTDEQRQAIFTKNCNLLVVAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+ + I+               K   + P    + K   LL         
Sbjct: 61  TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++       I  +F I DE +   + +EA       +    NE+   
Sbjct: 99  SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENED--- 155

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            F  ++E         L          L+L  F  S  +    +
Sbjct: 156 -FINLVESYASRKDTRL------QEVVLELHRFAKSAPFPYTWL 192


>gi|292492977|ref|YP_003528416.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
 gi|291581572|gb|ADE16029.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
          Length = 1159

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
              + +  A +P +S  V A AGSGKT +L QR L LL     P  ++ +T T+ AAAEM
Sbjct: 7   PDAAARRQALNPHQSFIVQAPAGSGKTELLTQRYLVLLARVEAPEEIVAITFTRKAAAEM 66

Query: 79  SHRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
            +R++E + +A  +   +   A  T    +   + D  K       +   P  L++QTI 
Sbjct: 67  RYRIVEALISARENQPPQAEPARTTWELARAVGRRDADK----GWELERHPSRLRIQTID 122

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           + C ++ +Q PL +   +   I +E ++  L  +A ++TL  +  ++  E   +   +L 
Sbjct: 123 SLCASLTRQMPLLSRFGAQPGITEESEN--LYRQAARATLTEV--ESGAEWSASVEVLLR 178

Query: 198 ISNDE--DIETLISDIISNRTAL 218
             N++   IETL+S +++ R   
Sbjct: 179 HLNNDWGKIETLLSAMLARRDQW 201


>gi|290968022|ref|ZP_06559571.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781928|gb|EFD94507.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str.
           28L]
          Length = 1217

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 101/224 (45%), Gaps = 33/224 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           ++ T++++   +   ++  +SA AGSGKT +LV+R++R LL   +P   + +L +T TKA
Sbjct: 1   MAWTEAQEAAMNSRGQTLLLSAAAGSGKTAVLVERLVRRLLDRQNPIDMTAVLVVTFTKA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+   +TA    +                 + D  +   LL           +
Sbjct: 61  AAAEMRERIGAALTAALEAT----------------GRPDAERQLALLP-------AASI 97

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H+FC+ +++ +    ++   F +A EE+   L ++  +  L S      EE     Y
Sbjct: 98  STLHSFCQEVIRTYFYTIDLDPAFRVAGEEELSLLRKQVLEDLLLSYY--EQEEKADVLY 155

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            + ++   E  +  I      RT  ++  +  S  +  + + ++
Sbjct: 156 PLADMFGTERGDDNIV-----RTVERMYQYSRSMPFPEQWLRQA 194


>gi|282910543|ref|ZP_06318347.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282325935|gb|EFB56243.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           WBG10049]
          Length = 1217

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++     +  +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|242373134|ref|ZP_04818708.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           M23864:W1]
 gi|242349085|gb|EES40686.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           M23864:W1]
          Length = 1218

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L        LL +T T  +A E
Sbjct: 11  WTDAQWRSIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDKIDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                + PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVDQRIQEASI---------------EDPNNEHLKNQRIKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  +F  ++E ++  L+++     L       + +      ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSNEAENVLLLDQTIDDVLERHYDILDPDFIDLTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+    +I  +          FF  +     + + +
Sbjct: 169 DRNDDQFRDIIKRM---------YFFSIANPNPFEWLNQ 198


>gi|290893619|ref|ZP_06556601.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071]
 gi|290556821|gb|EFD90353.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071]
          Length = 1051

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +  G+ P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  EA+I   F + +  +S  + +E  +  L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++ +LIS         KL  F  +       +E  +
Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206


>gi|126652433|ref|ZP_01724605.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
 gi|126590704|gb|EAZ84819.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
          Length = 1238

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 30/223 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +S T  +        +   VSA AGSGKT +L+ R++  ++A  +P     LL +T T A
Sbjct: 12  VSWTDDQWKAIYASGQDTLVSAAAGSGKTAVLINRMIEKVIATDNPINVDELLVVTFTNA 71

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +AAEM HR               +S  + K   + P  + + +   L+          ++
Sbjct: 72  SAAEMRHR---------------MSEALEKAIVENPTSNHLRRQLSLI-------NKAQI 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H+FC AI++Q+    +I   F IA+E +   L ++     L        E   +A Y
Sbjct: 110 STLHSFCLAIVKQYAYMLDIDPGFRIANEAEVALLRDDIVADVLEGAYDSEEETQIQAIY 169

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +++    +  +  I  +IS     KL      +   ++ +  
Sbjct: 170 RLVDSFTSDRDDQAIETLIS-----KLYDTSRVHAEPQRWLRS 207


>gi|49483127|ref|YP_040351.1| hypothetical protein SAR0929 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|81651446|sp|Q6GIC1|ADDA_STAAR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|49241256|emb|CAG39935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 1217

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++     +  +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|282905282|ref|ZP_06313139.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282331689|gb|EFB61201.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 1217

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++     +  +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|257425017|ref|ZP_05601444.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427682|ref|ZP_05604081.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430317|ref|ZP_05606700.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433014|ref|ZP_05609374.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410]
 gi|257435918|ref|ZP_05611966.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           M876]
 gi|282913739|ref|ZP_06321528.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
           subsp. aureus M899]
 gi|282923655|ref|ZP_06331335.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           C101]
 gi|293500781|ref|ZP_06666632.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509732|ref|ZP_06668443.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           M809]
 gi|293524319|ref|ZP_06671006.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
           subsp. aureus M1015]
 gi|257272587|gb|EEV04710.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275875|gb|EEV07348.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279094|gb|EEV09705.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282429|gb|EEV12564.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410]
 gi|257285109|gb|EEV15228.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314523|gb|EFB44913.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           C101]
 gi|282322771|gb|EFB53093.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
           subsp. aureus M899]
 gi|290921282|gb|EFD98343.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095786|gb|EFE26047.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467829|gb|EFF10344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           M809]
          Length = 1217

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++     +  +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|119475989|ref|ZP_01616341.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143]
 gi|119450616|gb|EAW31850.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143]
          Length = 1153

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +++ A DP+ S  V+A AGSGKT +L QRVLRLL     P  +L +T T+ AAAEM 
Sbjct: 6   DNEQRVKALDPSCSVCVTAPAGSGKTELLSQRVLRLLATVGQPEEILAITFTRKAAAEMH 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           HR+++ +   S L       +  K+   +  +  + + +    ++LE  G LK+QTI + 
Sbjct: 66  HRIIQALRDASTLDQ---PHQSHKLLSWQLARQVLDRDQEHGWSLLENTGRLKIQTIDSL 122

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              + +Q P+ +N  +   I++  Q       A    L    L+ +         +L   
Sbjct: 123 SAHLTRQMPILSNFGAQPKISEYPQQC--YRAAVHGFLD--YLETDTVYADDLSNLLTHV 178

Query: 200 NDE--DIETLISDIISNRTALKL 220
           ++    +E L+  ++  R    L
Sbjct: 179 DNNIGRLERLLITMLQRRDQWLL 201


>gi|282903504|ref|ZP_06311395.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus C160]
 gi|282908262|ref|ZP_06316093.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282918665|ref|ZP_06326402.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           C427]
 gi|283957705|ref|ZP_06375158.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295427450|ref|ZP_06820085.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|282317799|gb|EFB48171.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           C427]
 gi|282327927|gb|EFB58209.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282596459|gb|EFC01420.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus C160]
 gi|283791156|gb|EFC29971.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295128838|gb|EFG58469.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|312438670|gb|ADQ77741.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315194499|gb|EFU24891.1| hypothetical protein CGSSa00_12270 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 1217

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++     +  +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|331005026|ref|ZP_08328431.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989]
 gi|330421154|gb|EGG95415.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989]
          Length = 1260

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 10/224 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + E+  A D + S  VSA AGSGKT +L QRVL LL     P  +L +T TK AAAEM 
Sbjct: 14  DQPERTRALDTSTSFAVSAPAGSGKTGLLTQRVLALLAQCEEPENVLAITFTKKAAAEMQ 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+L+ +      + E     +      +  ++ +++       +   P  L++ TI + 
Sbjct: 74  ARILDALRHAEQHTTEPEEDYLKT--TWRLARAVLARNTEKEWQLFSCPNRLRITTIDSL 131

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C +I QQ P E+ +     I D        + A + TLA +   N+  L++    +++  
Sbjct: 132 CRSISQQMPFESKLGHTPEILDNPN--LAYQMAARETLAQLNTQND--LQEHLIYLVKHV 187

Query: 200 NDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +++   IETL+  ++  R     + F      +R  +E  L  +
Sbjct: 188 DNKLDTIETLLIQLLGKRDQWLPVLF--QSKDQRGALEAILVDV 229


>gi|297590190|ref|ZP_06948829.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297576489|gb|EFH95204.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus MN8]
          Length = 1217

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++     +  +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|2625021|gb|AAC46278.1| DNA helicase II [Serratia marcescens]
          Length = 720

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   LEAN+   F I D +   +L+    K  + ++ +D  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLEANLPQDFQILDSDDQLRLL----KRIIKALNVDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|323443832|gb|EGB01444.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O46]
          Length = 1217

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYTTGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|315652079|ref|ZP_07905080.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum
           DSM 3986]
 gi|315485726|gb|EFU76107.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum
           DSM 3986]
          Length = 1152

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 30/221 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+++Q        S  VSA AGSGKT +LV+R+++ +  N +P    TLL +T T+AAA
Sbjct: 2   WTEAQQAAIDIKKGSILVSAAAGSGKTAVLVERIIKKITDNENPIDVDTLLVMTFTRAAA 61

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           A M  ++   +             E+ K +        + +   LL +        ++ T
Sbjct: 62  ASMKEKIYNALL-----------KEMEKHEKDTKEFKRLKEQSVLLASA-------RIMT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
             +FC +I+++   + +I   F++ADE +   L  +     L S      E   K F E+
Sbjct: 104 TDSFCLSIIRENIDKIDIDPAFSVADESEISLLKADTMDELLES----EYEAASKDFMEL 159

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +   +   +  IS+ I      KL  F  S  W  + ++ 
Sbjct: 160 SDAFANSKGDKSISEFIE-----KLYRFAVSKPWPLEWLDS 195


>gi|283770033|ref|ZP_06342925.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus
           subsp. aureus H19]
 gi|283460180|gb|EFC07270.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus
           subsp. aureus H19]
          Length = 1217

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++     +  +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPDPTNWLDQ 199


>gi|255030234|ref|ZP_05302185.1| hypothetical protein LmonL_16176 [Listeria monocytogenes LO28]
          Length = 218

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +  G+ P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  EA+I   F + +  +S  + +E  +  L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++ +LIS         KL  F  +       +E  +
Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206


>gi|313632207|gb|EFR99276.1| ATP-dependent nuclease subunit A [Listeria seeligeri FSL N1-067]
          Length = 1236

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 35/232 (15%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPST 64
           Q   E  +  + T  +         +  V+A AGSGKT +LV R++  L+    N +   
Sbjct: 3   QLIPEKPNDSTWTDDQWKAIQADGENILVAAAAGSGKTAVLVTRIIEKLINEKSNWNVDE 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T A+AAEM  R+ + +                    + P+ + + K   +L   
Sbjct: 63  LLIVTFTNASAAEMKFRIGKAL---------------EDELAQDPDSAHLKKQVAML--- 104

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LD 183
                   + T+H+FC  I+++   EA+I  +F + +  +S  + +E  ++ L     ++
Sbjct: 105 ----NYASISTLHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLENLLEEAYSIE 160

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           NN +            +D ++  LIS         KL  F  +     + +E
Sbjct: 161 NNNDFFHLVESFTGDRSDTELHMLIS---------KLYDFSRANPSPDEWLE 203


>gi|253731575|ref|ZP_04865740.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724818|gb|EES93547.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 1217

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|157368435|ref|YP_001476424.1| DNA-dependent helicase II [Serratia proteamaculans 568]
 gi|157320199|gb|ABV39296.1| DNA helicase II [Serratia proteamaculans 568]
          Length = 723

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 5   DVSDLLDSLNEKQREAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPYSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 63  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D +   +L++   K    ++ +D  + 
Sbjct: 85  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQFRLLKRIVK----ALNIDEKQW 140

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 141 PPRQAMWYINGKKDEGLR 158


>gi|322834927|ref|YP_004214954.1| DNA helicase II [Rahnella sp. Y9602]
 gi|321170128|gb|ADW75827.1| DNA helicase II [Rahnella sp. Y9602]
          Length = 720

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL +    P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDQLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D +   +LI    K  + ++ +D+ + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQIRLI----KRLIKALNIDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|298694207|gb|ADI97429.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1217

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|194290034|ref|YP_002005941.1| helicase, uvrd subfamily [Cupriavidus taiwanensis LMG 19424]
 gi|193223869|emb|CAQ69878.1| Putative helicase, uvrD subfamily [Cupriavidus taiwanensis LMG
           19424]
          Length = 1213

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP RS  V A AGSGKT +LV R++RLLLA A P  +L +T T+ AA EM  R+LE
Sbjct: 26  RAACDPARSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRDRLLE 85

Query: 85  IITAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           ++   +    D++++A + +       +  + +AR L   +L  PG + + T H +   +
Sbjct: 86  VLAQLARDSDDDVIAALVQRGLCADAAREALPRARRLHAQVLAAPGRMAIDTFHGWFGTL 145

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + I    A+   E + ++  EA      ++      EL+ A+  +++   D  
Sbjct: 146 LRGAPLASGIVPGAAL--REDALRMKREAWAPVWRALATPPYAELRAAWETLVDTVGDFQ 203

Query: 204 IETLISDIISNRTAL 218
              L+  +   R+  
Sbjct: 204 ARALLDAMFHARSEW 218


>gi|329733963|gb|EGG70285.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 1217

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|253732675|ref|ZP_04866840.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253729286|gb|EES98015.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 1217

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|302332580|gb|ADL22773.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 1217

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|15923957|ref|NP_371491.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926556|ref|NP_374089.1| hypothetical protein SA0828 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267401|ref|YP_001246344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393454|ref|YP_001316129.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156979293|ref|YP_001441552.1| hypothetical protein SAHV_0962 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316128|ref|ZP_04839341.1| hypothetical protein SauraC_08287 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005757|ref|ZP_05144358.2| hypothetical protein SauraM_04790 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795298|ref|ZP_05644277.1| recombination helicase AddA [Staphylococcus aureus A9781]
 gi|258406947|ref|ZP_05680100.1| recombination helicase AddA [Staphylococcus aureus A9763]
 gi|258421915|ref|ZP_05684836.1| recombination helicase AddA [Staphylococcus aureus A9719]
 gi|258435312|ref|ZP_05689051.1| recombination helicase AddA [Staphylococcus aureus A9299]
 gi|258441524|ref|ZP_05690884.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115]
 gi|258447223|ref|ZP_05695372.1| recombination helicase AddA [Staphylococcus aureus A6300]
 gi|258449983|ref|ZP_05698081.1| recombination helicase AddA [Staphylococcus aureus A6224]
 gi|269202582|ref|YP_003281851.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98]
 gi|282893994|ref|ZP_06302225.1| recombination helicase AddA [Staphylococcus aureus A8117]
 gi|282927190|ref|ZP_06334812.1| recombination helicase AddA [Staphylococcus aureus A10102]
 gi|295405773|ref|ZP_06815582.1| recombination helicase AddA [Staphylococcus aureus A8819]
 gi|296276179|ref|ZP_06858686.1| exonuclease RexA [Staphylococcus aureus subsp. aureus MR1]
 gi|297245364|ref|ZP_06929235.1| recombination helicase AddA [Staphylococcus aureus A8796]
 gi|81705953|sp|Q7A6H4|ADDA_STAAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|81781869|sp|Q99VC3|ADDA_STAAM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764537|sp|A6U074|ADDA_STAA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764554|sp|A5IRE5|ADDA_STAA9 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764555|sp|A7X0I2|ADDA_STAA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|13700771|dbj|BAB42067.1| SA0828 [Staphylococcus aureus subsp. aureus N315]
 gi|14246736|dbj|BAB57129.1| similar to ATP-dependent nuclease subunit A [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740470|gb|ABQ48768.1| DNA helicase/exodeoxyribonuclease V, subunit A [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149945906|gb|ABR51842.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156721428|dbj|BAF77845.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789270|gb|EEV27610.1| recombination helicase AddA [Staphylococcus aureus A9781]
 gi|257841486|gb|EEV65927.1| recombination helicase AddA [Staphylococcus aureus A9763]
 gi|257842248|gb|EEV66676.1| recombination helicase AddA [Staphylococcus aureus A9719]
 gi|257848973|gb|EEV72956.1| recombination helicase AddA [Staphylococcus aureus A9299]
 gi|257852314|gb|EEV76240.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115]
 gi|257853971|gb|EEV76925.1| recombination helicase AddA [Staphylococcus aureus A6300]
 gi|257856903|gb|EEV79806.1| recombination helicase AddA [Staphylococcus aureus A6224]
 gi|262074872|gb|ACY10845.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98]
 gi|282590879|gb|EFB95954.1| recombination helicase AddA [Staphylococcus aureus A10102]
 gi|282763480|gb|EFC03609.1| recombination helicase AddA [Staphylococcus aureus A8117]
 gi|285816646|gb|ADC37133.1| ATP-dependent nuclease, subunit A [Staphylococcus aureus 04-02981]
 gi|294969208|gb|EFG45228.1| recombination helicase AddA [Staphylococcus aureus A8819]
 gi|297177667|gb|EFH36917.1| recombination helicase AddA [Staphylococcus aureus A8796]
 gi|312829364|emb|CBX34206.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315130452|gb|EFT86439.1| hypothetical protein CGSSa03_03488 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329728233|gb|EGG64672.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 1217

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|49485743|ref|YP_042964.1| hypothetical protein SAS0837 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208398|ref|ZP_06924828.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|81649660|sp|Q6GAV9|ADDA_STAAS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|49244186|emb|CAG42612.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887137|gb|EFH26040.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
          Length = 1217

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|258455496|ref|ZP_05703455.1| recombination helicase AddA [Staphylococcus aureus A5937]
 gi|257862314|gb|EEV85083.1| recombination helicase AddA [Staphylococcus aureus A5937]
          Length = 1217

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|21282578|ref|NP_645666.1| hypothetical protein MW0849 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300912474|ref|ZP_07129917.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|81762665|sp|Q8NXE9|ADDA_STAAW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|21204016|dbj|BAB94714.1| MW0849 [Staphylococcus aureus subsp. aureus MW2]
 gi|300886720|gb|EFK81922.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 1217

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|57651659|ref|YP_185840.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL]
 gi|88194662|ref|YP_499458.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221050|ref|YP_001331872.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman]
 gi|221142113|ref|ZP_03566606.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452081|ref|ZP_05700097.1| exonuclease RexA [Staphylococcus aureus A5948]
 gi|262052141|ref|ZP_06024349.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3]
 gi|282922247|ref|ZP_06329942.1| recombination helicase AddA [Staphylococcus aureus A9765]
 gi|304381479|ref|ZP_07364129.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|81694859|sp|Q5HHB7|ADDA_STAAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|122539894|sp|Q2FZT5|ADDA_STAA8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764538|sp|A6QFH8|ADDA_STAAE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|57285845|gb|AAW37939.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL]
 gi|87202220|gb|ABD30030.1| ATP-dependent nuclease subunit A, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150373850|dbj|BAF67110.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman]
 gi|257860296|gb|EEV83128.1| exonuclease RexA [Staphylococcus aureus A5948]
 gi|259159960|gb|EEW44996.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3]
 gi|269940469|emb|CBI48846.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593537|gb|EFB98531.1| recombination helicase AddA [Staphylococcus aureus A9765]
 gi|302750795|gb|ADL64972.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339842|gb|EFM05786.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|329313635|gb|AEB88048.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329726247|gb|EGG62717.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 1217

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|82750584|ref|YP_416325.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122]
 gi|123548876|sp|Q2YWW4|ADDA_STAAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|82656115|emb|CAI80524.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122]
          Length = 1217

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199


>gi|327395987|dbj|BAK13409.1| DNA helicase II UvrD [Pantoea ananatis AJ13355]
          Length = 720

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSELLDGLNDKQRKAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|188026352|ref|ZP_02961779.2| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827]
 gi|188020076|gb|EDU58116.1| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827]
          Length = 723

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + +A P +++ 
Sbjct: 5   DVSYLLEGLNDKQREAVAA--PRTNLLVLAGAGSGKTRVLVHRIAWLMAVEHASPFSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I +                                      +
Sbjct: 63  VTFTNKAAAEMRHRINQLIGS--------------------------------------S 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++Q  L+A +   F I D +   +LI    +  L ++ LD  + 
Sbjct: 85  EGGMWIGTFHGLAHRLLRQHYLDAGLPQDFQILDSDDQYRLI----RRLLKAMNLDEKQW 140

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 141 PPRQGMWYINGKKDEGLR 158


>gi|330427295|gb|AEC18629.1| putative nuclease/helicase [Pusillimonas sp. T7-7]
          Length = 1119

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 109/224 (48%), Gaps = 15/224 (6%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +  A +PTRS  + A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  RVL
Sbjct: 12  RAAAINPTRSFLIQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVL 71

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             + A      E    E  K++G +  ++ + + + L   +L+ P  + ++TI +FC  +
Sbjct: 72  AKLKAGQGPQPE----EPYKLRGWQLARAVLQRDQQLGWDLLDYPARMSIRTIDSFCTWL 127

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  P  +++    +I D   +++  E A ++TL+  M D N  +      +    +   
Sbjct: 128 VRAMPWLSSLGGVPSITDN--AREHYEAAAQATLS--MADENAAVAGLIAHM--DVDVRA 181

Query: 204 IETLISDIISNRTALKLIFFFFSYL-----WRRKIIEKSLWSIA 242
            + L++D++++R     +    + +          IE  L ++A
Sbjct: 182 AQGLLADMLASRDQWLPLLGQRADIDLLLENLDSAIEADLVALA 225


>gi|212710171|ref|ZP_03318299.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM
           30120]
 gi|212687170|gb|EEB46698.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM
           30120]
          Length = 723

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + NA P +++ 
Sbjct: 5   DVSYLLEGLNDKQREAVAA--PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 63  VTFTNKAAAEMRHRINQLVGT--------------------------------------S 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++Q  L+AN+   F I D +   +LI    +  L ++ LD  + 
Sbjct: 85  EGGMWIGTFHGLAHRLLRQHYLDANLPQDFQILDSDDQYRLI----RRLLKAMNLDEKQW 140

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 141 PPRQGMWYINGKKDEGLR 158


>gi|254853388|ref|ZP_05242736.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300763922|ref|ZP_07073918.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL
           N1-017]
 gi|258606756|gb|EEW19364.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300515263|gb|EFK42314.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL
           N1-017]
          Length = 1234

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +   + P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  +A+I  +F + +  +S  + +E  ++ L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++  LIS         KL  F  +       +E+ +
Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206


>gi|312869874|ref|ZP_07730014.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3]
 gi|311094614|gb|EFQ52918.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3]
          Length = 1386

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 32/223 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T ++Q   SD  ++  VSA+AGSGKT +LV R + L+    A    +L +T T AAA  
Sbjct: 6   PTPAQQQAISDRDQNIIVSASAGSGKTAVLVNRAVDLIKEGRATVDRMLLVTFTDAAAKN 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  ++ + +   +                         + R L+   +       + TIH
Sbjct: 66  MRDKIRQRMQEVAQAEP---------------------RLRDLMNEQVNRLAVADISTIH 104

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML---DNNEELKKAFYE 194
           AFC  +++++     +   F +  ++  + L++E     +        D   +   +F +
Sbjct: 105 AFCLKLIKRYYFLIGLDPQFRLLTDDTERLLLQEDVLHQVNEQFYASADEESDDSASFGQ 164

Query: 195 I-LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + L  S+D D + L +D++     LKL+    +     + + +
Sbjct: 165 LVLNFSSDRDDQGL-NDLV-----LKLMEIANAQPDPEQWLAQ 201


>gi|254931621|ref|ZP_05264980.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
 gi|293583174|gb|EFF95206.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
          Length = 1235

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +   + P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  +A+I  +F + +  +S  + +E  ++ L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++  LIS         KL  F  +       +E+ +
Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206


>gi|271502378|ref|YP_003335404.1| DNA helicase II [Dickeya dadantii Ech586]
 gi|270345933|gb|ACZ78698.1| DNA helicase II [Dickeya dadantii Ech586]
          Length = 720

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQRDAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDQLLGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|254825170|ref|ZP_05230171.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
 gi|255519745|ref|ZP_05386982.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL
           J1-175]
 gi|293594413|gb|EFG02174.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
          Length = 1235

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +   + P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  +A+I  +F + +  +S  + +E  ++ L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++  LIS         KL  F  +       +E+ +
Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206


>gi|226224875|ref|YP_002758982.1| ATP-dependent deoxyribonuclease (subunit A) [Listeria monocytogenes
           Clip81459]
 gi|225877337|emb|CAS06051.1| Putative ATP-dependent deoxyribonuclease (subunit A) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 1235

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +   + P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  +A+I  +F + +  +S  + +E  ++ L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++  LIS         KL  F  +       +E+ +
Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206


>gi|46908500|ref|YP_014889.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b
           F2365]
 gi|81565413|sp|Q71X99|ADDA_LISMF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|46881772|gb|AAT05066.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes serotype
           4b str. F2365]
          Length = 1235

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +   + P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  +A+I  +F + +  +S  + +E  ++ L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++  LIS         KL  F  +       +E+ +
Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206


>gi|238793575|ref|ZP_04637199.1| DNA helicase II [Yersinia intermedia ATCC 29909]
 gi|238727165|gb|EEQ18695.1| DNA helicase II [Yersinia intermedia ATCC 29909]
          Length = 720

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ LD+ + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|289435607|ref|YP_003465479.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171851|emb|CBH28397.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 1236

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 35/232 (15%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPST 64
           Q   E  +  + T  +         +  V+A AGSGKT +LV R++  L+    N +   
Sbjct: 3   QLIPEKPNDSTWTDDQWKAIQADGENILVAAAAGSGKTAVLVTRIIEKLINEKSNWNVDE 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T A+AAEM  R+ + +                    + P+ + + K   +L   
Sbjct: 63  LLIVTFTNASAAEMKFRIGKAL---------------EDELAQNPDSAHLKKQVAML--- 104

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LD 183
                   + T+H+FC  I+++   EA+I  +F + +  +S  + +E  ++ L     ++
Sbjct: 105 ----NYASISTLHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLENLLEKAYSIE 160

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           NN +            +D ++  LIS         KL  F  +     + +E
Sbjct: 161 NNNDFFHLVESFTGDRSDTELHMLIS---------KLYDFSRANPSPDEWLE 203


>gi|238756289|ref|ZP_04617604.1| DNA helicase II [Yersinia ruckeri ATCC 29473]
 gi|238705495|gb|EEP97897.1| DNA helicase II [Yersinia ruckeri ATCC 29473]
          Length = 720

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQHRLLKRIVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|239636506|ref|ZP_04677508.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603]
 gi|239597861|gb|EEQ80356.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603]
          Length = 1220

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L        LL +T T  +A E
Sbjct: 11  WTDAQWRSIYAKGQDTLVAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                + PN   +   R  +          ++ T+H
Sbjct: 71  MKHRVDQRIQQASI---------------EDPNNEHLKNQRIKIHQT-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  +F  + E ++  L+E+     L       N +      ++  
Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDEVLEQHYDKLNPDFIDLTEQLSN 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             +D     +I          +L FF  +     + + +
Sbjct: 169 DRSDTQFRNIIK---------QLYFFSIANPDPFQWLNQ 198


>gi|323440877|gb|EGA98585.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O11]
          Length = 1217

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L        LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       + +
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLNQ 199


>gi|16801431|ref|NP_471699.1| hypothetical protein lin2368 [Listeria innocua Clip11262]
 gi|81595220|sp|Q929A9|ADDA_LISIN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|16414891|emb|CAC97595.1| lin2368 [Listeria innocua Clip11262]
          Length = 1235

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T  +A
Sbjct: 14  WTDDQWKAIQANGNNILVAAAAGSGKTAVLVTRIIEKLINETENLNVDELLIVTFTNVSA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM +R+ + +                +   + P    + K   LL           + T
Sbjct: 74  AEMKYRIGKSL---------------EEALVQNPESVHLKKQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I+++   EA+I  +F + +  +S  + +E  +  L     ++NNE        
Sbjct: 112 LHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLEDLLEKEYSIENNEGFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++ TLIS         KL  F  +       +E+ +
Sbjct: 172 FTGDRSDAELHTLIS---------KLYDFSRANPNPDLWLEQMV 206


>gi|315304458|ref|ZP_07874741.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596]
 gi|313627172|gb|EFR96022.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596]
          Length = 1236

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 33/224 (14%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAA 74
           + T  +        ++  V+A AGSGKT +LV R++  L+      +   LL +T T A+
Sbjct: 13  TWTDDQWKAIQADGKNILVAAAAGSGKTAVLVTRIIEKLIDETVKWNVDELLIVTFTNAS 72

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+ + +                +   + P+ + + K   LL           + 
Sbjct: 73  AAEMKFRIGKAL---------------EEALVQNPDSAHLKKQVALL-------NYASIS 110

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  I+++   EA+I  +F + +  +S  + +E  +  L       + +   +F+ 
Sbjct: 111 TLHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLEDLLEEAYGIKDND---SFFH 167

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++    +  +T +  +IS     KL  F  +       +EK +
Sbjct: 168 LVDSFTGDRTDTELHILIS-----KLYDFSRANPEPDIWLEKMV 206


>gi|242237694|ref|YP_002985875.1| DNA-dependent helicase II [Dickeya dadantii Ech703]
 gi|242129751|gb|ACS84053.1| DNA helicase II [Dickeya dadantii Ech703]
          Length = 720

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQRDAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDQLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|73667245|ref|YP_303261.1| UvrD/REP helicase [Ehrlichia canis str. Jake]
 gi|72394386|gb|AAZ68663.1| UvrD/REP helicase [Ehrlichia canis str. Jake]
          Length = 854

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 14/192 (7%)

Query: 26  LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           +A++P  +  W+SA+AG+GKT  LV RVLRLL+       +LCLT T AAA EM+ R+  
Sbjct: 4   IATNPFYNFIWISASAGTGKTRTLVNRVLRLLITGHK--NILCLTFTNAAAHEMTERIHS 61

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I++ W+ L +E L  E+  I       ++  +AR L   +      L ++TIH+FC  ++
Sbjct: 62  ILSTWTILKNEELKKELQDIIPTNITLTEYKRARELFNNLQNL--SLSIKTIHSFCYQLI 119

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
             FP+E  I+ +  I D         E+       ++  ++  +K  F  I     +  I
Sbjct: 120 STFPIETGISPNCTIKD-------FSESFSKIFYKLL--HDPTIKDHFSAISHEITETTI 170

Query: 205 ETLISDIISNRT 216
             L+  I+S + 
Sbjct: 171 YELLYKILSKQD 182


>gi|282600070|ref|ZP_05972885.2| DNA helicase II [Providencia rustigianii DSM 4541]
 gi|282566938|gb|EFB72473.1| DNA helicase II [Providencia rustigianii DSM 4541]
          Length = 764

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + NA P +++ 
Sbjct: 46  DVSYLLEGLNDKQREAVAA--PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMA 103

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 104 VTFTNKAAAEMRHRINHLIGT--------------------------------------S 125

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++Q  L+AN+   F I D +   +LI    +  L ++ LD  + 
Sbjct: 126 EGGMWIGTFHGLAHRLLRQHYLDANLPQDFQILDSDDQYRLI----RRLLKAMNLDEKQW 181

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 182 PPRQGMWYINGKKDEGLR 199


>gi|328957498|ref|YP_004374884.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4]
 gi|328673822|gb|AEB29868.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4]
          Length = 1268

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 27/218 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +     +   +  VSA+AGSGKT +LVQRV+  + +  +   +L +T+T+AAA EM
Sbjct: 14  FTDGQWQAIYEEGHNILVSASAGSGKTTVLVQRVIEKIKSGTNVDEMLIVTYTEAAAKEM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                     IQ    ++SDM   RHL    +       + T+HA
Sbjct: 74  KARIQ------------------VAIQEAVTSESDMELKRHL-TRQVTLIHQASISTLHA 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++++    N+   F +  +E    L++E+    +   +    + L   F ++   
Sbjct: 115 FCLQVIRRYYYLINLDPIFRLLTDETEILLLKESVWEEVREELYGEEDTL---FKDLTAS 171

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +++  +  ++D+I       L  F  +       +E+
Sbjct: 172 YSNDRSDAGLTDLI-----FSLYEFSRANPRPAVWLEQ 204


>gi|188532376|ref|YP_001906173.1| DNA-dependent helicase II [Erwinia tasmaniensis Et1/99]
 gi|188027418|emb|CAO95265.1| DNA helicase II [Erwinia tasmaniensis Et1/99]
          Length = 720

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMAVENCSPHSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|291327137|ref|ZP_06127128.2| DNA helicase II [Providencia rettgeri DSM 1131]
 gi|291311697|gb|EFE52150.1| DNA helicase II [Providencia rettgeri DSM 1131]
          Length = 723

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + NA P +++ 
Sbjct: 5   DVSYLLEGLNDKQREAVAA--PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 63  VTFTNKAAAEMRHRINQLIGT--------------------------------------S 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++Q  ++AN+   F I D +   +LI    +  L ++ LD  + 
Sbjct: 85  EGGMWIGTFHGLAHRLLRQHYMDANLPQDFQILDSDDQYRLI----RRLLKAMNLDEKQW 140

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 141 PPRQGMWYINGKKDEGLR 158


>gi|47092374|ref|ZP_00230164.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|47019151|gb|EAL09894.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b
           H7858]
          Length = 1106

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +   + P+ + + +   LL           + T
Sbjct: 74  AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  I++++  +A+I  +F + +  +S  + +E  ++ L     ++NNE        
Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                +D ++  LIS         KL  F  +       +E+ +
Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206


>gi|169335596|ref|ZP_02862789.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258334|gb|EDS72300.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1171

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 91/223 (40%), Gaps = 31/223 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++ TKS+    +   ++  +SA AG GKT IL  R++RL+L         L +T T AAA
Sbjct: 1   MNWTKSQSDAINTDNKNLLISAGAGCGKTAILTNRIIRLMLEEKTDIDKFLVVTFTNAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           + M  ++ +++ +                        + +  +  L   +       + T
Sbjct: 61  SGMKEKIRKLLYS---------------------KIKEKNNDKRYLFDQISNLEKANIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC ++++++    ++   F I D   +  L++EA            +++        
Sbjct: 100 LHSFCISVIREYYHLVDVDPAFKIIDSTNANILMDEAFDMLFEDRYKKEDKDFINTSISY 159

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
              +++E+ + ++ +I          FF ++     K + + +
Sbjct: 160 SFNADEEEFKNILKEI---------YFFIYNRPNPFKWLREKV 193


>gi|283476681|emb|CAY72510.1| DNA helicase II [Erwinia pyrifoliae DSM 12163]
          Length = 723

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 5   DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 63  VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 85  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 140

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 141 PARQGMWYINGKKDEGLR 158


>gi|302879642|ref|YP_003848206.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302582431|gb|ADL56442.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 1099

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 3/194 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A +P RS  V A AGSGKT +LV RV+RLLL    P  +L +T T+ AA EM  R+ +
Sbjct: 4   REALNPNRSVVVEACAGSGKTWLLVSRVVRLLLDGVAPGEILAITFTRKAAQEMQARLRD 63

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   +   D+ +   + + +G    +  + +AR L    L     + + T H +   I+
Sbjct: 64  WLYELAAKDDDFVRDFLVQ-RGVDDVELALPRARLLYQQFLLARPSVTISTFHGWFMQIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           Q+ P+ A       +   E++ +L +EA +  L  +      E  ++   + +     + 
Sbjct: 123 QRAPVSAGSAGGVQLV--EKTAQLWQEAWQMFLDELQSAPESETAQSMMVLFKELGLSNT 180

Query: 205 ETLISDIISNRTAL 218
           ++L+ + ++ R+  
Sbjct: 181 QSLLGNFVNKRSEW 194


>gi|310766136|gb|ADP11086.1| DNA helicase II [Erwinia sp. Ejp617]
          Length = 720

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|291165683|gb|EFE27731.1| ATP-dependent nuclease subunit A [Filifactor alocis ATCC 35896]
          Length = 1224

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 31/221 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +S T  +  +  +  ++  VSA AGSGKT +LV+R+LR++       + +L +T T AAA
Sbjct: 10  VSYTNEQNAVIYEKNKNILVSAAAGSGKTAVLVERILRIVEEERVDINRMLIVTFTNAAA 69

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+               S    K  G+K + +   + + + I          + T
Sbjct: 70  GEMRERI---------------SKAFAKRLGQKGHDTAFLQDQMIKI------SEASIST 108

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++QF   A+I+  FA+A E     L  ++ +  L     ++ E   + F+++
Sbjct: 109 LHSFCIDVLRQFFHAADISPSFAMATEANVSVLKAKSLEEVLE----ESYERGDETFFQL 164

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++       +    +++      ++  F     +  + +++
Sbjct: 165 VDAYGGNKSDKAFVELV-----YRIYQFIQGQPYPLEWLKQ 200


>gi|149927015|ref|ZP_01915273.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105]
 gi|149824236|gb|EDM83456.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105]
          Length = 1078

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 4/210 (1%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +A +P  S  V A AGSGKT +L  R+ RLLL+ A P  +L +T T+ AA EM  R+  +
Sbjct: 11  IACNPANSVVVEACAGSGKTWLLTARLFRLLLSGARPDQILAITFTRKAAQEMQERLFGL 70

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   + LSD+ LS  +T+ +G   N+++++KAR L   +L    G+ + T H +  ++ Q
Sbjct: 71  LRECALLSDDKLSTLLTE-RGAVANEANLNKARALAGEVLTNSRGVTIDTFHGWFASLCQ 129

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             PL +  +     ++         +       + +L++  EL  AF  ++   +   + 
Sbjct: 130 MAPLASGFSRQ---SEPTDQTLFWMDMAIDVFTANLLNDQSELLPAFDTLVSQMDRAVVR 186

Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            ++   ++NR A  L           ++ E
Sbjct: 187 QVLQHALTNRVACSLWLHNSEAPPLNRVFE 216


>gi|43295|emb|CAA25043.1| unnamed protein product [Escherichia coli K-12]
          Length = 258

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|123440590|ref|YP_001004584.1| DNA-dependent helicase II [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087551|emb|CAL10332.1| DNA helicase II [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 720

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|312112099|ref|YP_003990415.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1]
 gi|311217200|gb|ADP75804.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1]
          Length = 1238

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ + A   P     LL +T T A+A
Sbjct: 14  WTDEQWKAIVADGRDILVAAAAGSGKTAVLVERIIQKITAKEDPVDVDRLLVVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ E                I +   K+PN   + +   LL           + T
Sbjct: 74  SEMKTRIAE---------------AIERELDKQPNSLHLRRQLSLL-------NRASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++++    +I   F IAD+ +++ L EE  +  L       + E    F++I
Sbjct: 112 IHSFCLDVVRKYYYLIDIDPVFRIADDTEAELLKEEVMEELLEEEYGKADNEP---FFDI 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++    +  +  + ++I     L +  F  S+    K +++
Sbjct: 169 VDRYTGDRSDAELQEMI-----LAIHEFSQSHPEPCKWLDQ 204


>gi|295401125|ref|ZP_06811099.1| recombination helicase AddA [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976918|gb|EFG52522.1| recombination helicase AddA [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 1238

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        R   V+A AGSGKT +LV+R+++ + A   P     LL +T T A+A
Sbjct: 14  WTDEQWKAIVADGRDILVAAAAGSGKTAVLVERIIQKITAKEDPVDVDRLLVVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ E                I +   K+PN   + +   LL           + T
Sbjct: 74  SEMKTRIAE---------------AIERELDKQPNSLHLRRQLSLL-------NRASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++++    +I   F IAD+ +++ L EE  +  L       + E    F++I
Sbjct: 112 IHSFCLDVVRKYYYLIDIDPVFRIADDTEAELLKEEVMEELLEEEYGKADNEP---FFDI 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++    +  +  + ++I     L +  F  S+    K +++
Sbjct: 169 VDRYTGDRSDAELQEMI-----LAIHEFSQSHPEPCKWLDQ 204


>gi|270264259|ref|ZP_06192526.1| DNA helicase II [Serratia odorifera 4Rx13]
 gi|270041908|gb|EFA15005.1| DNA helicase II [Serratia odorifera 4Rx13]
          Length = 723

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 5   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 63  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ +D  + 
Sbjct: 85  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQFRLLKRIVK----ALNIDEKQW 140

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 141 PPRQAMWYINGKKDEGLR 158


>gi|332159820|ref|YP_004296397.1| DNA-dependent helicase II [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607637|emb|CBY29135.1| ATP-dependent DNA helicase UvrD/PcrA [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664050|gb|ADZ40694.1| DNA-dependent helicase II [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862567|emb|CBX72721.1| DNA helicase II [Yersinia enterocolitica W22703]
          Length = 720

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|259906888|ref|YP_002647244.1| DNA-dependent helicase II [Erwinia pyrifoliae Ep1/96]
 gi|224962510|emb|CAX53965.1| DNA helicase II [Erwinia pyrifoliae Ep1/96]
          Length = 720

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|300714804|ref|YP_003739607.1| DNA helicase II [Erwinia billingiae Eb661]
 gi|299060640|emb|CAX57747.1| DNA helicase II [Erwinia billingiae Eb661]
          Length = 720

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMAVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D E   +L+    K  + ++ LD+ + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQAMWYINGKKDEGLR 155


>gi|30250100|ref|NP_842170.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
 gi|30139207|emb|CAD86077.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
          Length = 1155

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 110/229 (48%), Gaps = 13/229 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             + E+  A DP  S  V A AGSGKT +L QR L LL     P  ++ +T T+ AA+EM
Sbjct: 10  PDQRERQQALDPWHSFIVQAPAGSGKTGLLTQRFLVLLATVEEPEEIVAITFTRKAASEM 69

Query: 79  SHRVLEIITAWS------HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            HR+L+ +   +        S+  L  +  + Q ++     ++  +     +L+ P  L+
Sbjct: 70  KHRILQALRDTAGDINSDAESETALLNDAYQRQLRELANRVLAHDQARGWQLLQNPSRLR 129

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +QTI + C  ++ + P+ +   +  ++A++    +L  EA + T+ ++  +   E   A 
Sbjct: 130 IQTIDSLCAWLVDRMPVCSRQGALSSVAEDAD--RLYLEAARLTVEAL--EEEGEWTAAI 185

Query: 193 YEILEISNDE--DIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEKSL 238
             ++   ++    ++ LI+D+++ R   L+ +    +    R  +E  L
Sbjct: 186 EHLIGHLDNRLDRLQQLIADMLARRDLWLRGVVDAANSDDMRDRLESVL 234


>gi|314936814|ref|ZP_07844161.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655433|gb|EFS19178.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp.
           hominis C80]
          Length = 1224

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L +      LL +T T  +A E
Sbjct: 16  WTDAQWNSIYAKGQDILVAAAAGSGKTAVLVERIIQKILKDEVDVDKLLVVTFTNLSARE 75

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                + P    +   R  +          ++ T+H
Sbjct: 76  MKHRVEQRIQQASL---------------EDPKNEHLKSQRIKIHQA-------QISTLH 113

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ      +  +F    E ++  L+E++    L     D + E      ++  
Sbjct: 114 SFCLKVIQQHYDVIQLDPNFRTISEVENVLLLEQSIDEVLEHHYEDPDIEFLTLVEQLSN 173

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+    ++          +  +F  +     K ++ 
Sbjct: 174 DRNDDRFREILK---------RFYYFSIANPSPFKWLDS 203


>gi|238760176|ref|ZP_04621323.1| DNA helicase II [Yersinia aldovae ATCC 35236]
 gi|238701612|gb|EEP94182.1| DNA helicase II [Yersinia aldovae ATCC 35236]
          Length = 720

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|225019255|ref|ZP_03708447.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum
           DSM 5476]
 gi|224947886|gb|EEG29095.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum
           DSM 5476]
          Length = 1188

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 29/213 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAA 76
           T  ++   +    +  +SA+AGSGKT +L  RV+  L           LL +T T+AAA 
Sbjct: 21  TPEQRAAITSDGGTLLLSASAGSGKTFVLSSRVVYKLAHRERETRADRLLVVTFTRAAAK 80

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+               +A++ ++  + P+ + + + + LL          K+ TI
Sbjct: 81  EMRTRI---------------TAKLDELVARFPDDAKLQRQKLLL-------SRAKITTI 118

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            +FC  +++       ++  F IADE +  ++ +EA    L  +  D   +  K F  + 
Sbjct: 119 DSFCADLVRDNFDRLGLSPDFRIADETELAQIQDEA----LDELFEDYYSQGDKEFAALS 174

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLW 229
           +  + +D   L   ++S  + ++   F   +LW
Sbjct: 175 DSFSLKDDSRLKGIVLSIYSRIRSNPFPLEWLW 207


>gi|291333833|gb|ADD93516.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C13]
          Length = 597

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 5/205 (2%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
              + ++ A DP +S  VSA AGSGKT ++ QRVLRLL     P  +LC+T T+ AAAEM
Sbjct: 2   NDNAARIEALDPQQSFIVSAPAGSGKTGLITQRVLRLLRTVESPEQILCITFTRKAAAEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + R+   +             +  K Q      + +  ++ +   +++ P  L++QTI  
Sbjct: 62  ALRIHNALRDALINP---RPDDPYKAQIWDLAAAAIEHSKQMDWDLMDMPNRLRIQTIDG 118

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  I  QF LE  I      +D   S  L   A ++ L  +  D++     A       
Sbjct: 119 FCRYIASQFALETEIGVLPEPSDNIVS--LYRIAARNLLDKLEEDSDTGRYVAVLLAHMG 176

Query: 199 SNDEDIETLISDIISNRTALKLIFF 223
           +N E  E L+S+++SNR     + F
Sbjct: 177 NNIERCERLLSELLSNREQWLPLIF 201


>gi|228474316|ref|ZP_04059051.1| recombination helicase AddA [Staphylococcus hominis SK119]
 gi|228271675|gb|EEK13022.1| recombination helicase AddA [Staphylococcus hominis SK119]
          Length = 1221

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L +      LL +T T  +A E
Sbjct: 13  WTDAQWNSIYAKGQDILVAAAAGSGKTAVLVERIIQKILKDEVDVDKLLVVTFTNLSARE 72

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                + P    +   R  +          ++ T+H
Sbjct: 73  MKHRVEQRIQQASL---------------EDPKNEHLKSQRIKIHQA-------QISTLH 110

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ      +  +F    E ++  L+E++    L     D + E      ++  
Sbjct: 111 SFCLKVIQQHYDVIQLDPNFRTISEVENVLLLEQSIDEVLEHHYEDPDIEFLTLVEQLSN 170

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+    ++          +  +F  +     K ++ 
Sbjct: 171 DRNDDRFREILK---------RFYYFSIANPSPFKWLDS 200


>gi|238789384|ref|ZP_04633170.1| DNA helicase II [Yersinia frederiksenii ATCC 33641]
 gi|238722527|gb|EEQ14181.1| DNA helicase II [Yersinia frederiksenii ATCC 33641]
          Length = 720

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|168334042|ref|ZP_02692261.1| Recombination helicase AddA [Epulopiscium sp. 'N.t. morphotype B']
          Length = 1186

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 32/229 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NAHPSTLLCLTHTK 72
           +  T  +QL      ++  VSA AGSGKT +L +RV++ +L            L +T T 
Sbjct: 1   MGFTTEQQLAIDLQDKNILVSAAAGSGKTAVLTERVIKRVLNTGKNRVDIDRFLIVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA+EM  R+   +      + +    +                    L   L   G   
Sbjct: 61  AAASEMKERIEIKLGDALSTAADGEEVD-------------------YLQKQLGLLGKAS 101

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC  +++    E  +  +     E+++  L   A    L +      EE   AF
Sbjct: 102 ISTIHSFCGKLIRTHFNELGLEPNMRTCTEQEATLLQNLAVTDILTAAF----EEESDAF 157

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           Y++ +     +     + +I     L++  F  S ++ +K + + + ++
Sbjct: 158 YQLCDAYGSVNGMDAXASMI-----LQIYKFTQSTVFPQKWLAQQVATL 201


>gi|325982040|ref|YP_004294442.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
 gi|325531559|gb|ADZ26280.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
          Length = 1158

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 9/204 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I     ++  A DP++S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAA
Sbjct: 6   IIPDADQRRQALDPSQSFIVQAPAGSGKTTLLIQRYLKLLTCVDTPEEVVAITFTRKAAA 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RVL  +       +   + E      ++   + + + +     + E P  L++QTI
Sbjct: 66  EMRTRVLAELEIARIPGEAETAYE---KLNRELAVAVLLRDQQAGWYLSEHPERLRIQTI 122

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            + C ++ +Q P+ +   +       E +     EA + TL   ++  +  +     ++L
Sbjct: 123 DSLCASLTRQMPMLSKFGAQPETT--EDATDFYLEAVRVTLE--LMQQDHAIAHDIEQLL 178

Query: 197 EISNDE--DIETLISDIISNRTAL 218
           E  +++   +ETL+ ++++ R   
Sbjct: 179 EHLDNDMARVETLLIEMLAQRDHW 202


>gi|239826206|ref|YP_002948830.1| recombination helicase AddA [Geobacillus sp. WCH70]
 gi|239806499|gb|ACS23564.1| recombination helicase AddA [Geobacillus sp. WCH70]
          Length = 1244

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        +   V+A AGSGKT +LV+R+++ + A   P     LL +T T A+A
Sbjct: 14  WTDEQWKAIVADGQDILVAAAAGSGKTAVLVERIIQKITAKEDPIDVDRLLVVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E                I +   K+PN   + +   LL           + T
Sbjct: 74  AEMKTRIAE---------------AIERELDKQPNSLHLRRQLSLL-------NRASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++++    +I   F IAD+ + + L EE  +  L       + EL   F+E+
Sbjct: 112 IHSFCLDVIRKYYYLIDIDPVFRIADDTEMELLKEEVMEELLEEEYGKADNEL---FFEV 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++    +  +  + ++I     L +  F  S+    + +++
Sbjct: 169 VDRYTGDRSDAELQEMI-----LAIYEFSRSHPETYRWLDQ 204


>gi|81428521|ref|YP_395521.1| ATP-dependent exonuclease, subunit A (N terminal fragment),
           authentic frameshift [Lactobacillus sakei subsp. sakei
           23K]
 gi|123564300|sp|Q38X69|ADDA_LACSS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|78610163|emb|CAI55212.1| ATP-dependent exonuclease, subunit A (N terminal fragment),
           authentic frameshift [Lactobacillus sakei subsp. sakei
           23K]
          Length = 890

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T S+Q           VSA+AGSGKT +LV RV++ +L      TLL +T T+AAA EM
Sbjct: 9   FTPSQQAAVDHDGHDILVSASAGSGKTSVLVARVIQKILKGTDVDTLLVVTFTEAAATEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +   S  + E                      +  L   L      ++ T+HA
Sbjct: 69  RQRIQAALRDASEKATEPA-------------------VKQRLRQQLSLVPTAQISTLHA 109

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN----NEELKKAFYE 194
           FC  +++QF    +    F +  +   + L+ +     +     ++      E    FYE
Sbjct: 110 FCLKVIKQFYYVIDRDPVFRLLSDTAERLLLADQVWQRVREAFYNHEYVKENEQDTLFYE 169

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + +  +++  +  ++DI+      +L+ F  +     K + K
Sbjct: 170 LAQNFSNDRNDDGLTDIV-----FELLDFANANSNPVKWLNK 206


>gi|196248138|ref|ZP_03146840.1| recombination helicase AddA [Geobacillus sp. G11MC16]
 gi|196212922|gb|EDY07679.1| recombination helicase AddA [Geobacillus sp. G11MC16]
          Length = 1242

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 33/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75
            T  +    +   R   V+A AGSGKT +LV+R+++ + A         LL +T T AAA
Sbjct: 14  WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                +    +P+   + +   LL           + T
Sbjct: 74  AEMKARIGEAL---------------ERELANRPHSLHLRRQLSLL-------NRASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++    ++   F IADE + + L E+  +  L       + E    F+ +
Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKADNER---FFAV 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++    +  +  + ++I     L L  F  S+    + +  
Sbjct: 169 VDAYTGDRSDAELQEMI-----LALYEFSRSHPAPDEWLAD 204


>gi|238763616|ref|ZP_04624576.1| DNA helicase II [Yersinia kristensenii ATCC 33638]
 gi|238698094|gb|EEP90851.1| DNA helicase II [Yersinia kristensenii ATCC 33638]
          Length = 672

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|320539382|ref|ZP_08039051.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str.
           Tucson]
 gi|320030507|gb|EFW12517.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str.
           Tucson]
          Length = 720

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+  D +++ +SE + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLFDSLNEKQSEAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  ++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHVLGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   +EAN+   F I D +   +L++        ++ +D  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMEANLPQDFQILDSDDQLRLLKRIVN----ALNIDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|227357154|ref|ZP_03841523.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906]
 gi|227162686|gb|EEI47653.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906]
          Length = 718

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ 
Sbjct: 2   DVSYLLEGLNDKQREAVAA--PRVNMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEDLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H+    +++   L+A +   F I D +   +LI    KS      LD+ + 
Sbjct: 82  QGGMWIGTFHSLAHRLLRAHYLDAGLPQDFQIIDSDDQYRLIRRIVKSM----ALDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQGMWYINGKKDEGLR 155


>gi|197287153|ref|YP_002153025.1| DNA-dependent helicase II [Proteus mirabilis HI4320]
 gi|194684640|emb|CAR46555.1| DNA helicase II [Proteus mirabilis HI4320]
          Length = 718

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ 
Sbjct: 2   DVSYLLEGLNDKQREAVAA--PRVNMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEDLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H+    +++   L+A +   F I D +   +LI    KS      LD+ + 
Sbjct: 82  QGGMWIGTFHSLAHRLLRAHYLDAGLPQDFQIIDSDDQYRLIRRIVKSM----ALDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQGMWYINGKKDEGLR 155


>gi|138894263|ref|YP_001124716.1| ATP-dependent nuclease subunit A [Geobacillus thermodenitrificans
           NG80-2]
 gi|251764525|sp|A4IKW7|ADDA_GEOTN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|134265776|gb|ABO65971.1| ATP-dependent nuclease, subunit A [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1242

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 33/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75
            T  +    +   R   V+A AGSGKT +LV+R+++ + A         LL +T T AAA
Sbjct: 14  WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                +    +P+   + +   LL           + T
Sbjct: 74  AEMKARIGEAL---------------ERELANRPHSLHLRRQLSLL-------NRASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++    ++   F IADE + + L E+  +  L       + E    F+ +
Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKADNER---FFAV 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++    +  +  + ++I     L L  F  S+    + +  
Sbjct: 169 VDAYTGDRSDAELQEMI-----LALYEFSRSHPAPDEWLAD 204


>gi|304398155|ref|ZP_07380030.1| DNA helicase II [Pantoea sp. aB]
 gi|304354441|gb|EFM18813.1| DNA helicase II [Pantoea sp. aB]
          Length = 720

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  +   + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSELLDGLNDNQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + S+ LD+ + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKSMNLDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|308188858|ref|YP_003932989.1| DNA helicase II [Pantoea vagans C9-1]
 gi|308059368|gb|ADO11540.1| DNA helicase II [Pantoea vagans C9-1]
          Length = 720

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  +   + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSELLDGLNDNQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + S+ LD+ + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKSMNLDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|291458763|ref|ZP_06598153.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418680|gb|EFE92399.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 1234

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 34/222 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++ + S    +  V+A AGSGKT +LV+ V+ LL     P   S LL +T T++AA
Sbjct: 5   WTEEQERVISHRGGNLLVAAAAGSGKTAVLVEHVISLLTEREDPTSLSELLIMTFTESAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+   +        E                         LI          + T
Sbjct: 65  AEMKERIRLSLEERLRKDPENGR----------------------LIREAGNLQNANIST 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++ +     ++   F + +E + + L  +     L       +    +     
Sbjct: 103 IDSFCRRLILENYASIDLDPSFRVGEEGELRLLRSDLVTELLEEHYESCDPGYFRFLENF 162

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
               +D  IE LI         LK+  +  +  W    +  +
Sbjct: 163 TRGKDDAGIEELI---------LKVYEYSEATPWPEDYLRDA 195


>gi|253690332|ref|YP_003019522.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756910|gb|ACT14986.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 720

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIRALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWFINGKKDEGLR 155


>gi|293607025|ref|ZP_06689369.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814622|gb|EFF73759.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 1149

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + Q  + +  A DPTRS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+
Sbjct: 7   LPQDHAARTDALDPTRSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAAS 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RVL  +        E +       +  +  ++ +++       +L+ P  L ++TI
Sbjct: 67  EMHARVLSKLRRGLDAPPEAMHER----RSWELARAALARNDEQGWHLLDHPARLAIRTI 122

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            +FC  +++  P  + +     I D   ++   E A ++TL   + D+ + ++     + 
Sbjct: 123 DSFCAGLVRSMPWLSELGGMPEITD--DARAHYEAAARATLD--LADDYDAVRILLQHL- 177

Query: 197 EISNDEDIETLISDIISNRTALKLIF 222
              + +  +  I+D++  R     + 
Sbjct: 178 -DVDVQAAKDAIADMLGQRDQWLPLL 202


>gi|317046397|ref|YP_004114045.1| DNA helicase II [Pantoea sp. At-9b]
 gi|316948014|gb|ADU67489.1| DNA helicase II [Pantoea sp. At-9b]
          Length = 720

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLNGLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDQLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|50123099|ref|YP_052266.1| DNA-dependent helicase II [Pectobacterium atrosepticum SCRI1043]
 gi|49613625|emb|CAG77076.1| DNA helicase II [Pectobacterium atrosepticum SCRI1043]
          Length = 720

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  +   + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDGLNDKQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRINHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLL----KRLIRALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWFINGKKDEGLR 155


>gi|283470166|emb|CAQ49377.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 1217

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R+++ +L +      LL +T T  +A E
Sbjct: 12  WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDCIDVDRLLVVTFTNLSARE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                  P  + +   R  +          ++ T+H
Sbjct: 72  MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     NI  +F  + E ++  L+E+     +      + + L  AF E+ E
Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + +  +     II      +L FF  +       +++
Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPDPTNWLDQ 199


>gi|73541802|ref|YP_296322.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha
           JMP134]
 gi|72119215|gb|AAZ61478.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha
           JMP134]
          Length = 1197

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP  S  V A AGSGKT +LV R++RLLLA A P  +L +T T+ AA EM  R+LE
Sbjct: 20  RAACDPASSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRERLLE 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           ++   +  SDE +   +  +    +     + +AR L   +L  PG + + T H +   +
Sbjct: 80  VLAQLARDSDEAVVEALVMRGMTAQAAHESLPRARRLHAQVLAAPGRMAIDTFHGWFGTL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  PL + +    ++   E + ++  EA      ++      EL++A+  +++   +  
Sbjct: 140 LRGAPLASGVVPGASL--REDALRMKREAWAPVWRALATPKYAELRQAYEALVDAVGEFQ 197

Query: 204 IETLISDIISNRTAL 218
              L+  +   R+  
Sbjct: 198 ARGLLDAMFHARSEW 212


>gi|227114721|ref|ZP_03828377.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 720

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIRALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWFINGKKDEGLR 155


>gi|294497408|ref|YP_003561108.1| ATP-dependent nuclease subunit A [Bacillus megaterium QM B1551]
 gi|294347345|gb|ADE67674.1| ATP-dependent nuclease, subunit A [Bacillus megaterium QM B1551]
          Length = 1245

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 35/221 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        +   V+A AGSGKT +LV+R+++ +     P     LL  T T A+A
Sbjct: 14  WTDDQWNAIVSSGQDILVAAAAGSGKTAVLVERIIKKITMGDEPIDVDRLLVATFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM +R+ E +                K   K P+   + +  +LL           + T
Sbjct: 74  AEMRNRIGEAL---------------EKELKKNPSSLHLRRQLNLL-------NRASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  +++ +    ++   F IAD+ ++  L EE  +        ++ NE        
Sbjct: 112 LHSFCLEVIRTYYYLIDVDPGFRIADDTEADLLREEVLEELFEEQYSIEQNERFFDLIDR 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                ND DI+ ++          KL  F  S       +E
Sbjct: 172 YTSDRNDLDIQLMVR---------KLYDFARSNPDPNGWLE 203


>gi|254785006|ref|YP_003072434.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901]
 gi|237686397|gb|ACR13661.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901]
          Length = 1138

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 10/209 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I    +E+  A +P +S    A AGSGKT +L QR L LL     P  +L +T T+ A 
Sbjct: 1   MIIADSTERRTALEPDQSFICEAPAGSGKTELLTQRYLVLLARVRRPEEILAITFTRKAT 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RVL  +    HL       E  +    +  ++ ++  +     +L+ P  L+++T
Sbjct: 61  GEMRERVLHAL----HLGRGPEPEEAHRQLTWQLARAVLAADQQHQWQLLDNPNRLQIKT 116

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
             + C ++ +Q P+E++  S   I D   S +L   A  + L ++  + +     A   +
Sbjct: 117 FDSLCSSLTRQLPMESSFGSQPQITD--DSAELYRSAVHALLGTL--EEDSAWAVALGVV 172

Query: 196 LEISNDE--DIETLISDIISNRTALKLIF 222
           L+  ++     E L+  +++ R     + 
Sbjct: 173 LDFLDNRFDRFEALMGQLLAKREQWLPLL 201


>gi|73663117|ref|YP_301898.1| putative ATP-dependent nuclease subunit A [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123642147|sp|Q49WA6|ADDA_STAS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|72495632|dbj|BAE18953.1| putative ATP-dependent nuclease subunit A [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1219

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 85/218 (38%), Gaps = 32/218 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R++        LL +T T A+A E
Sbjct: 14  WTDNQWKSIYAKGQDILVAAAAGSGKTAVLVERIIQRIIRDEIDVDKLLVVTFTNASARE 73

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV + I   S                + P+ + +   R  +          ++ T+H
Sbjct: 74  MKQRVDQRIQEASI---------------ENPDNAHLKNQRVKIHQA-------QISTLH 111

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++QQ     +I  +F  + E ++  L+E+     L       +        ++  
Sbjct: 112 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDEVLERHYDILDPHFIDLTEQLSS 171

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             ND+ +   I ++          +F  +       ++
Sbjct: 172 DRNDDQLRNTIKEM---------YYFSVANPNPLNWLQ 200


>gi|317121624|ref|YP_004101627.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885]
 gi|315591604|gb|ADU50900.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885]
          Length = 1504

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 84/221 (38%), Gaps = 34/221 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  ++   +    S  VSA AG+GKT +LV+R+++ LL  A P     LL +T T+AA
Sbjct: 24  AWTGEQRQAIALRGTSLLVSAAAGAGKTTVLVERIVQRLLDPADPLDVDRLLVVTFTEAA 83

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A +M  R+ E +                    ++PN   + +   LL       G   + 
Sbjct: 84  ATQMKDRIRERL---------------ELAIAQRPNDMHLRRQLALL-------GRASIS 121

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  I++Q+     +     +A E +S+ L  E               +       
Sbjct: 122 TVHSFCLRIVRQYFYRLGLDPAAKVAGEHESQLLRYEVLDELFERRYAAAAGDFLALVEA 181

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                NDE +  L+         L +     S       ++
Sbjct: 182 YGGRRNDESLRQLV---------LSVYESAISRPRPGAWLD 213


>gi|307132967|ref|YP_003884983.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937]
 gi|306530496|gb|ADN00427.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937]
          Length = 720

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A+    +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQRDAVAAT--RSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDQLLGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|295702782|ref|YP_003595857.1| ATP-dependent nuclease subunit A [Bacillus megaterium DSM 319]
 gi|294800441|gb|ADF37507.1| ATP-dependent nuclease, subunit A [Bacillus megaterium DSM 319]
          Length = 1245

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 35/221 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +        +   V+A AGSGKT +LV+R+++ +     P     LL  T T A+A
Sbjct: 14  WTDDQWNAIVSSGQDILVAAAAGSGKTAVLVERIIKKITMGDEPIDVDRLLVATFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM +R+ E +                K   K P+   + +  +LL           + T
Sbjct: 74  AEMRNRIGEAL---------------EKELKKNPSSLHLRRQLNLL-------NRASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
           +H+FC  +++ +    ++   F IAD+ ++  L EE  +        ++ NE        
Sbjct: 112 LHSFCLEVIRTYYYLIDVDPGFRIADDTEADLLREEVLEELFEEEYSIEQNERFFDLIDR 171

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                ND DI+ ++          KL  F  S       +E
Sbjct: 172 YTSDRNDLDIQLMVR---------KLYDFARSNPDPNGWLE 203


>gi|253991590|ref|YP_003042946.1| DNA-dependent helicase II [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638468|emb|CAR67090.1| dna helicase ii (ec 3.6.1.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783040|emb|CAQ86205.1| DNA helicase II [Photorhabdus asymbiotica]
          Length = 723

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 5   DVSYLLESLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 63  VTFTNKAAAEMRHRIENLIGT--------------------------------------S 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D E   +L+    K  + ++ LD+ + 
Sbjct: 85  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQHRLL----KRIIKAMNLDDKQW 140

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 141 PARQAMWYINGKKDEGLR 158


>gi|331002448|ref|ZP_08325966.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330410264|gb|EGG89698.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 1148

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 90/221 (40%), Gaps = 30/221 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+++Q        S  VSA AGSGKT +LV+R+++ +  + +P    +LL +T T+AAA
Sbjct: 2   WTEAQQAAIDIKKGSILVSAAAGSGKTAVLVERIIKKITDSKNPIDVDSLLVMTFTRAAA 61

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           A M  ++   +             E+ K +        + +   LL +        K+ T
Sbjct: 62  ASMKEKIYNALL-----------KEMEKYENNTKEFKRLKEQSILLSSA-------KIMT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
             +FC +I+++   + +I   F +ADE +   L  +A +  L S     N +        
Sbjct: 104 TDSFCLSIIKENIDKIDIDQAFNVADESEISLLRADAMEELLESEYEAANGDFMDLTDAF 163

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                D  I   +          +L  F  S  W  + ++ 
Sbjct: 164 ANTKGDRSISEFVE---------RLYRFAISKPWPIEWLDS 195


>gi|313123657|ref|YP_004033916.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280220|gb|ADQ60939.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 1227

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 26/222 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +  T  +        +   VSA+AGSGKT +LV+RV+R ++  +   + LL +T T+AAA
Sbjct: 3   VKYTPDQARAIESRGQDILVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + +        +   A+                    L   L       + T
Sbjct: 63  SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    +I   F+I  +    +L++E A +      + + N+  K  F  
Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENDYLQNENQAKKDRFLA 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + +    +       D++     L L  F  +    R  ++K
Sbjct: 164 LYDAFAGDSDANSARDLL-----LDLYQFAMARPNYRAWLQK 200


>gi|323943785|gb|EGB39880.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Escherichia coli
           H120]
          Length = 228

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|70726984|ref|YP_253898.1| hypothetical protein SH1983 [Staphylococcus haemolyticus JCSC1435]
 gi|123659798|sp|Q4L4Y3|ADDA_STAHJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|68447708|dbj|BAE05292.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 1225

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ +++        LL +T T  +A E
Sbjct: 13  WTDAQWKSIYANGQDVLVAAAAGSGKTAVLVERIIQKIIRDEIDVDKLLVVTFTNLSARE 72

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HRV + I   S                + P    +   R  +          ++ T+H
Sbjct: 73  MKHRVDQRIQQASI---------------EDPRNEHLKNQRIKIHQA-------QISTLH 110

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  I+QQ     ++  +F    + ++  L+E++    L       + E      ++  
Sbjct: 111 SFCLKIIQQHYDVIDLDPNFRTISDVENVLLLEQSIDEVLEKHYDTPDIEFLTLVEQLSS 170

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND++   L+          +   F  +     + ++ 
Sbjct: 171 DRNDDNFRDLLK---------RFYNFSIANPSPFEWLDS 200


>gi|312170748|emb|CBX79010.1| DNA helicase II [Erwinia amylovora ATCC BAA-2158]
          Length = 723

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 45/220 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 5   DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                         
Sbjct: 63  VTFTNKAAAEMRHRIEQLIGTRQ------------------------------------- 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 86  -GGMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 140

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             +     +    DE +  +  +   N      +  + +Y
Sbjct: 141 PARQGMWYINGKKDEGLRPMHIESYGNPIEQTWLRIYQAY 180


>gi|311281508|ref|YP_003943739.1| DNA helicase II [Enterobacter cloacae SCF1]
 gi|308750703|gb|ADO50455.1| DNA helicase II [Enterobacter cloacae SCF1]
          Length = 732

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N+ P +++ 
Sbjct: 14  DVSYLLDSLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENSSPYSIMA 71

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 72  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 93

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 94  QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 149

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 150 PPRQAMWYINSQKDEGLR 167


>gi|33592640|ref|NP_880284.1| putative nuclease/helicase [Bordetella pertussis Tohama I]
 gi|33572286|emb|CAE41838.1| putative nuclease/helicase [Bordetella pertussis Tohama I]
          Length = 1134

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 11/220 (5%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           + +  A DP+RS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  R
Sbjct: 12  AARRQALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHAR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           VL  ++    L          + +  +  ++ +++ +     +L+ P  L ++TI +FC 
Sbjct: 72  VLHKLS----LGAGEPPRSAHERRSWELARAALARDQEQGWHLLDHPARLAIRTIDSFCA 127

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++  P  + +     IAD   ++   E A ++TL   + D ++ ++     +    + 
Sbjct: 128 GLVRGMPWLSELGGMPDIAD--DARAHYEAAARATLE--LADEHDAVRALLAHL--DVDV 181

Query: 202 EDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLWS 240
           +  +  I+ ++  R     L+ F          + ++L  
Sbjct: 182 QAAKDAIAAMLGQRDQWMPLLQFGLDRDGLEASLAEALEH 221


>gi|329297035|ref|ZP_08254371.1| DNA-dependent helicase II [Plautia stali symbiont]
          Length = 720

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLNGLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDQLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|328951963|ref|YP_004369297.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
 gi|328452287|gb|AEB08116.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
          Length = 1137

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 92/202 (45%), Gaps = 7/202 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++ LA +P+ S  V A AGSGKT +L++R L LL     P  +L LT T+ AA E+ 
Sbjct: 8   DQRDRELAVNPSYSVHVEAPAGSGKTTVLLKRYLTLLARVEEPEEVLALTFTRKAAGELR 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +   +    ++  ++      +        +A             L++ T H+F
Sbjct: 68  ARIQQQLQGGTEQPSDVAPSQHAVELRELAQTVSHQQADKKNGYF----ERLQISTFHSF 123

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML--DNNEELKKAFYEILE 197
           C  +++  P  AN+   F + ++ ++  L +EA +     +     ++   +     ++ 
Sbjct: 124 CAQLLRLAPHNANLPPDFQLIEDREADWLKKEAIELMRRRLATLPASDPVRQTLVRRLVR 183

Query: 198 ISNDE-DIETLISDIISNRTAL 218
           ++ND   +   + +++S R  L
Sbjct: 184 LNNDWPRLAAELRELLSRREVL 205


>gi|300721452|ref|YP_003710727.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila
           ATCC 19061]
 gi|297627944|emb|CBJ88490.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila
           ATCC 19061]
          Length = 721

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DISYLLESLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIENLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H+    +++   L+AN+   F I D E   +LI    K  + ++ LD+ + 
Sbjct: 82  QGGMWIGTFHSLAHRLLRAHHLDANLPQDFQILDSEDQHRLI----KRIIKAMNLDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|261823387|ref|YP_003261493.1| DNA-dependent helicase II [Pectobacterium wasabiae WPP163]
 gi|261607400|gb|ACX89886.1| DNA helicase II [Pectobacterium wasabiae WPP163]
          Length = 720

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  +   + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDGLNDKQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRINHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLL----KRLIRALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWFINGKKDEGLR 155


>gi|303229716|ref|ZP_07316502.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515613|gb|EFL57569.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1273

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 37/232 (15%)

Query: 16  LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66
            +  T  ++     P  S        V+A AGSGKT +LV+R++  L    +P     L+
Sbjct: 2   GVKWTPEQESAIMSPKDSNLGAQTLLVAAAAGSGKTAVLVERIITRLKDMENPLSVQELM 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T TKAAAAEMS R+   +      +D+            K  ++ + +  +LL +   
Sbjct: 62  VVTFTKAAAAEMSARIGVALAKAMESTDD------------KSLQARLERQLNLLPSA-- 107

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T+H+FC+ +++ +  + +I     I +E +   L +E     L +++ +  E
Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDIPPTARIGNEAEMALLKQE----VLENLLKEAYE 158

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
             +   +++ +  +D+  +  + D       L L  F  S       +  ++
Sbjct: 159 HNEYGIFDLSDFFSDDKSDAGLQD-----KVLSLYEFAMSQSNPDGWMRHAV 205


>gi|227507848|ref|ZP_03937897.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227192686|gb|EEI72753.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 1254

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 30/224 (13%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +  T  +Q    D P  +  VSA+AGSGKT +LV R++ ++     +   LL +T T AA
Sbjct: 1   MQYTPDQQRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   + +                   + +K+   +++  L+T +       + 
Sbjct: 61  AKEMRERLRGSLQS-------------------EFSKATDPESKKHLLTQIRKVAVADIT 101

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+ A+C+ ++ ++     I  +F +  +    +L++E     +   +   +E+    F +
Sbjct: 102 TMDAYCQKLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFAD 159

Query: 195 ILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           + E  SND   E L + I       ++  F        K +  +
Sbjct: 160 LTENFSNDRSDEGLTNVI------FQMDEFANVNEDPDKWLNDA 197


>gi|227523105|ref|ZP_03953154.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii
           ATCC 8290]
 gi|227089709|gb|EEI25021.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii
           ATCC 8290]
          Length = 1254

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 30/224 (13%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +  T  +Q    D P  +  VSA+AGSGKT +LV R++ ++     +   LL +T T AA
Sbjct: 1   MQYTPDQQRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   + +                   + +K+   +++  L+T +       + 
Sbjct: 61  AKEMRERLRGSLQS-------------------EFSKATDPESKKHLLTQIRKVAVADIT 101

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+ A+C+ ++ ++     I  +F +  +    +L++E     +   +   +E+    F +
Sbjct: 102 TMDAYCQKLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFAD 159

Query: 195 ILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           + E  SND   E L + I       ++  F        K +  +
Sbjct: 160 LTENFSNDRSDEGLTNVI------FQMDEFANVNEDPDKWLNDA 197


>gi|292486682|ref|YP_003529552.1| DNA helicase II [Erwinia amylovora CFBP1430]
 gi|291552099|emb|CBA19136.1| DNA helicase II [Erwinia amylovora CFBP1430]
          Length = 723

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 45/220 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 5   DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                         
Sbjct: 63  VTFTNKAAAEMRHRIEQLIGTRQ------------------------------------- 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 86  -GGMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 140

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             +     +    DE +  +  +   N      +  + +Y
Sbjct: 141 PARQGMWYINGKKDEGLRPMHIESYGNPIEQTWLRIYQAY 180


>gi|22124304|ref|NP_667727.1| DNA-dependent helicase II [Yersinia pestis KIM 10]
 gi|45442958|ref|NP_994497.1| DNA-dependent helicase II [Yersinia pestis biovar Microtus str.
           91001]
 gi|21957076|gb|AAM83978.1|AE013639_7 DNA-dependent ATPase I and helicase II [Yersinia pestis KIM 10]
 gi|45437825|gb|AAS63374.1| DNA helicase II [Yersinia pestis biovar Microtus str. 91001]
          Length = 722

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + + + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 4   DVSDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 62  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 84  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PPRQAMWYINGKKDEGLR 157


>gi|251787838|ref|YP_003002559.1| DNA-dependent helicase II [Dickeya zeae Ech1591]
 gi|247536459|gb|ACT05080.1| DNA helicase II [Dickeya zeae Ech1591]
          Length = 720

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A+    +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQRDAVAAA--RSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDQLLGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|162418460|ref|YP_001605138.1| DNA-dependent helicase II [Yersinia pestis Angola]
 gi|162351275|gb|ABX85223.1| DNA helicase II [Yersinia pestis Angola]
          Length = 720

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + + + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|170026218|ref|YP_001722723.1| DNA-dependent helicase II [Yersinia pseudotuberculosis YPIII]
 gi|169752752|gb|ACA70270.1| DNA helicase II [Yersinia pseudotuberculosis YPIII]
          Length = 720

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + + + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|78043588|ref|YP_360999.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575608|sp|Q3AA35|ADDA_CARHZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|77995703|gb|ABB14602.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1167

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
           + + T  +    +    +  VSA AG+GKT +LV+RVL  +L +  P     LL +T T+
Sbjct: 1   MKNWTAEQMRAITSRGNALLVSAAAGAGKTSVLVERVLSRVLTDTPPVDIDRLLVVTFTE 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R               L  E+ K   + P  S + +   LL           
Sbjct: 61  AAAGEMKER---------------LGTELLKRLNEDPGNSRILEQLELLPVA-------D 98

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T+H+FC  I++++       + FAI +  +   L    K   L  I+ +  E+  +  
Sbjct: 99  ISTLHSFCHKIIRKYGRVCGYETKFAILEGPRETYL----KNKVLEEILEERYEKGDREL 154

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           + +LE  NDE  +  + ++I     L L  F  S     K +  SL
Sbjct: 155 FALLEYLNDEKNDRNLKELI-----LNLYHFSRSNPEPEKWLLDSL 195


>gi|227325792|ref|ZP_03829816.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 720

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIDHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLL----KRLIRALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWFINGKKDEGLR 155


>gi|51594549|ref|YP_068740.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 32953]
 gi|108806179|ref|YP_650095.1| DNA-dependent helicase II [Yersinia pestis Antiqua]
 gi|108810289|ref|YP_646056.1| DNA-dependent helicase II [Yersinia pestis Nepal516]
 gi|145600708|ref|YP_001164784.1| DNA-dependent helicase II [Yersinia pestis Pestoides F]
 gi|153947747|ref|YP_001399206.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 31758]
 gi|153997103|ref|ZP_02022236.1| DNA helicase II [Yersinia pestis CA88-4125]
 gi|165926252|ref|ZP_02222084.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939149|ref|ZP_02227700.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011668|ref|ZP_02232566.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213517|ref|ZP_02239552.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401880|ref|ZP_02307368.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420892|ref|ZP_02312645.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426213|ref|ZP_02317966.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468817|ref|ZP_02333521.1| DNA helicase II [Yersinia pestis FV-1]
 gi|186893549|ref|YP_001870661.1| DNA-dependent helicase II [Yersinia pseudotuberculosis PB1/+]
 gi|218930844|ref|YP_002348719.1| DNA-dependent helicase II [Yersinia pestis CO92]
 gi|229837171|ref|ZP_04457336.1| DNA helicase II [Yersinia pestis Pestoides A]
 gi|229839531|ref|ZP_04459690.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229900094|ref|ZP_04515231.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900460|ref|ZP_04515589.1| DNA helicase II [Yersinia pestis Nepal516]
 gi|270488814|ref|ZP_06205888.1| DNA helicase II [Yersinia pestis KIM D27]
 gi|294505505|ref|YP_003569567.1| DNA helicase II [Yersinia pestis Z176003]
 gi|51587831|emb|CAH19434.1| DNA helicase II [Yersinia pseudotuberculosis IP 32953]
 gi|108773937|gb|ABG16456.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Nepal516]
 gi|108778092|gb|ABG12150.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Antiqua]
 gi|115349455|emb|CAL22428.1| DNA helicase II [Yersinia pestis CO92]
 gi|145212404|gb|ABP41811.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Pestoides F]
 gi|149289409|gb|EDM39487.1| DNA helicase II [Yersinia pestis CA88-4125]
 gi|152959242|gb|ABS46703.1| DNA helicase II [Yersinia pseudotuberculosis IP 31758]
 gi|165912922|gb|EDR31548.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921776|gb|EDR38973.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989437|gb|EDR41738.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205190|gb|EDR49670.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961021|gb|EDR57042.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048773|gb|EDR60181.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054732|gb|EDR64536.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|186696575|gb|ACC87204.1| DNA helicase II [Yersinia pseudotuberculosis PB1/+]
 gi|229682479|gb|EEO78566.1| DNA helicase II [Yersinia pestis Nepal516]
 gi|229686874|gb|EEO78953.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695897|gb|EEO85944.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706114|gb|EEO92123.1| DNA helicase II [Yersinia pestis Pestoides A]
 gi|262363571|gb|ACY60292.1| DNA helicase II [Yersinia pestis D106004]
 gi|262367499|gb|ACY64056.1| DNA helicase II [Yersinia pestis D182038]
 gi|270337318|gb|EFA48095.1| DNA helicase II [Yersinia pestis KIM D27]
 gi|294355964|gb|ADE66305.1| DNA helicase II [Yersinia pestis Z176003]
 gi|320013561|gb|ADV97132.1| DNA helicase II [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 720

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + + + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|119773559|ref|YP_926299.1| DNA-dependent helicase II [Shewanella amazonensis SB2B]
 gi|119766059|gb|ABL98629.1| ATP-dependent DNA helicase UvrD [Shewanella amazonensis SB2B]
          Length = 721

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 45/220 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  LL + N  P ++L 
Sbjct: 2   DVSFLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV +I+                                         
Sbjct: 60  VTFTNKAAAEMRERVEKIVG--------------------------------------HN 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +  ++L+    K  L S+ LD  + 
Sbjct: 82  TGRMWIGTFHGLAHRLLRTHWQDAGLPQSFQIMDSDDQQRLL----KRILKSMNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             +     +    D+ +     D        KL+  +  Y
Sbjct: 138 PPRLVAGYINGKKDQGLRPAHIDAGPFPMEQKLLELYRIY 177


>gi|269137484|ref|YP_003294184.1| DNA-dependent helicase II [Edwardsiella tarda EIB202]
 gi|267983144|gb|ACY82973.1| DNA-dependent helicase II [Edwardsiella tarda EIB202]
 gi|304557557|gb|ADM40221.1| ATP-dependent DNA helicase UvrD/PcrA [Edwardsiella tarda FL6-60]
          Length = 719

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPFSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEALIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PARQGMWYINGKKDDGLR 155


>gi|238784730|ref|ZP_04628733.1| DNA helicase II [Yersinia bercovieri ATCC 43970]
 gi|238714326|gb|EEQ06335.1| DNA helicase II [Yersinia bercovieri ATCC 43970]
          Length = 720

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|238918094|ref|YP_002931608.1| DNA-dependent helicase II [Edwardsiella ictaluri 93-146]
 gi|238867662|gb|ACR67373.1| DNA helicase II, putative [Edwardsiella ictaluri 93-146]
          Length = 719

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPFSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEALIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PARQGMWYINGKKDDGLR 155


>gi|292897919|ref|YP_003537288.1| DNA helicase II [Erwinia amylovora ATCC 49946]
 gi|291197767|emb|CBJ44862.1| DNA helicase II [Erwinia amylovora ATCC 49946]
          Length = 720

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 45/220 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                         
Sbjct: 60  VTFTNKAAAEMRHRIEQLIGTRQ------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 83  -GGMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             +     +    DE +  +  +   N      +  + +Y
Sbjct: 138 PARQGMWYINGKKDEGLRPMHIESYGNPIEQTWLRIYQAY 177


>gi|227510906|ref|ZP_03940955.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri
           ATCC 11577]
 gi|227085858|gb|EEI21170.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri
           ATCC 11577]
          Length = 1254

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 30/224 (13%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +  T  +Q    D P  +  VSA+AGSGKT +LV R++ ++     +   LL +T T AA
Sbjct: 1   MQYTPDQQRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   + +                   + +K+   +++  L+T +       + 
Sbjct: 61  AKEMRERLRGSLQS-------------------EFSKATDPESKKHLLTQIRKVAVADIT 101

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+ A+C+ ++ ++     I  +F +  +    +L++E     +   +   +E+    F +
Sbjct: 102 TMDAYCQKLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFAD 159

Query: 195 ILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           + E  SND   E L + I       ++  F        K +  +
Sbjct: 160 LTENFSNDRSDEGLTNVI------FQMDEFANVNEDPDKWLNDA 197


>gi|33600423|ref|NP_887983.1| putative nuclease/helicase [Bordetella bronchiseptica RB50]
 gi|33568022|emb|CAE31935.1| putative nuclease/helicase [Bordetella bronchiseptica RB50]
          Length = 1134

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           + +  A DP+RS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  R
Sbjct: 12  AARRQALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHAR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           VL  ++    L          + +  +  ++ +++ +     +L+ P  L ++TI +FC 
Sbjct: 72  VLHKLS----LGAGEPPRSAHERRSWELARAALARDQEQGWHLLDHPARLAIRTIDSFCA 127

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++  P  + +     IAD   ++   E A ++TL   + D ++ ++     +    + 
Sbjct: 128 GLVRGMPWLSELGGMPDIAD--DARAHYEAAARATLE--LADEHDAVRALLAHL--DVDV 181

Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +  +  I+ ++  R     +  F      R  +E SL
Sbjct: 182 QAAKEAIAAMLGQRDQWMPLLQFGLD---RDGLEASL 215


>gi|323464966|gb|ADX77119.1| exonuclease RexA [Staphylococcus pseudintermedius ED99]
          Length = 1214

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 32/219 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75
           +  T ++        +   V+A AGSGKT +LV+R++ R+L        LL +T T  +A
Sbjct: 9   VQWTDAQWESIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDGIDVDRLLVVTFTNLSA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM HRV                A I +   + P+   +   R  +          ++ T
Sbjct: 69  REMKHRV---------------EARIQQAAIEDPSNQHLKNQRTKIHQA-------QIST 106

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  ++QQ     +I  +F  A E ++  L+EE            + + L   F  +
Sbjct: 107 LHSFCLRLIQQHYDVLDIDPNFRTASEVENVLLLEEVIDDVFEK----HYDRLDPTFVTL 162

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            E  + +  +  +  ++ N     L  F  +       +
Sbjct: 163 TEHISTDRDDAALRLMVKN-----LYDFSIANPDPIGWL 196


>gi|33595892|ref|NP_883535.1| putative nuclease/helicase [Bordetella parapertussis 12822]
 gi|33565971|emb|CAE36522.1| putative nuclease/helicase [Bordetella parapertussis]
          Length = 1134

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           + +  A DP+RS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  R
Sbjct: 12  AARRQALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHAR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           VL  ++    L          + +  +  ++ +++ +     +L+ P  L ++TI +FC 
Sbjct: 72  VLHKLS----LGAGEPPRSAHERRSWELARAALARDQEQGWHLLDHPARLAIRTIDSFCA 127

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++  P  + +     IAD   ++   E A ++TL   + D ++ ++     +    + 
Sbjct: 128 GLVRGMPWLSELGGMPDIAD--DARAHYEAAARATLE--LADEHDAVRALLAHL--DVDV 181

Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +  +  I+ ++  R     +  F      R  +E SL
Sbjct: 182 QAAKEAIAAMLGQRDQWMPLLQFGLD---RDGLEASL 215


>gi|304436811|ref|ZP_07396777.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370183|gb|EFM23842.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 1264

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 24/226 (10%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           D ++ T  +Q        +  V+A AGSGKT +LV+R++  +         +L LT TKA
Sbjct: 3   DRLTFTADQQRAIDARGHNILVAAAAGSGKTRVLVERIISQVRNEELSLDRILVLTFTKA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   + A            I    G       + + R LL           +
Sbjct: 63  AALEMRERIEAALNAEI--------DAIAGDAGISKEIDRLERQRILLTDA-------DI 107

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+FC+ ++Q      +I   F +A E++ + L  +     L     +  +     F 
Sbjct: 108 STFHSFCQRLLQAHIDATDIPPTFRLASEQEIRLLKRDVMDELLERKYEEAVQGGSDEFL 167

Query: 194 EILEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
              +       D E L  ++++      L  F  S       + + 
Sbjct: 168 AFADAYGGVKGDDEKLKEEVLA------LYDFALSQPSPAVWLSRQ 207


>gi|319891943|ref|YP_004148818.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161639|gb|ADV05182.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1214

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 32/219 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75
           +  T ++        +   V+A AGSGKT +LV+R++ R+L        LL +T T  +A
Sbjct: 9   VQWTDAQWESIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDGIDVDRLLVVTFTNLSA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM HRV                A I +   + P+   +   R  +          ++ T
Sbjct: 69  REMKHRV---------------EARIQQAAIEDPSNQHLKNQRTKIHQA-------QIST 106

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  ++QQ     +I  +F  A E ++  L+EE            + + L   F  +
Sbjct: 107 LHSFCLRLIQQHYDVLDIDPNFRTASEVENVLLLEEVIDDVFEK----HYDRLDPTFVTL 162

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            E  + +  +  +  ++ N     L  F  +       +
Sbjct: 163 TEHISTDRDDAALRLMVKN-----LYDFSIANPDPIGWL 196


>gi|291085881|ref|ZP_06354319.2| DNA helicase II [Citrobacter youngae ATCC 29220]
 gi|291069706|gb|EFE07815.1| DNA helicase II [Citrobacter youngae ATCC 29220]
          Length = 738

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 20  DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMA 77

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +I+                                        +
Sbjct: 78  VTFTNKAAAEMRHRIGQIMGT--------------------------------------S 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 156 PPRQAMWFINSQKDEGLR 173


>gi|238798592|ref|ZP_04642068.1| DNA helicase II [Yersinia mollaretii ATCC 43969]
 gi|238717548|gb|EEQ09388.1| DNA helicase II [Yersinia mollaretii ATCC 43969]
          Length = 721

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGKKDEGLR 155


>gi|311108181|ref|YP_003981034.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8]
 gi|310762870|gb|ADP18319.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8]
          Length = 1147

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           + +  A DPTRS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  R
Sbjct: 12  AARADALDPTRSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHAR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           VL  +        E +       +  +  ++ +++       +L+ P  L ++TI +FC 
Sbjct: 72  VLSKLRRGLDAPPEAMHER----RSWELARAALARNEAQGWHLLDHPARLAIRTIDSFCA 127

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++  P  + +     I D   ++   E A ++TL   + D+ E ++     +    + 
Sbjct: 128 GLVRSMPWLSELGGMPEITD--DARAHYEAAARATLD--LADDYEAVRILLKHL--DVDV 181

Query: 202 EDIETLISDIISNRTALKLIF 222
           +  +  I+D++  R     + 
Sbjct: 182 QAAKEAIADMLGQRDQWLPLL 202


>gi|238750684|ref|ZP_04612183.1| DNA helicase II [Yersinia rohdei ATCC 43380]
 gi|238711074|gb|EEQ03293.1| DNA helicase II [Yersinia rohdei ATCC 43380]
          Length = 720

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D +++ + E + A  P  +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSKKDEGLR 155


>gi|225630221|ref|YP_002727012.1| helicase, UvrD/Rep family [Wolbachia sp. wRi]
 gi|225592202|gb|ACN95221.1| helicase, UvrD/Rep family [Wolbachia sp. wRi]
          Length = 1099

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 38/215 (17%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P  S WV+A+AG+GKT IL+ RVLRLLL N     +LCLT T AAA EM +R+  I+
Sbjct: 5   AINPNFSVWVNASAGTGKTKILIDRVLRLLLENK--RNILCLTFTNAAANEMENRIHSIL 62

Query: 87  TAWSHLSDEILSAEITKIQ-------------------------GKKPNKSDMSKARHLL 121
           + W+  SD +L+A++ ++                          G + NK  +++AR L 
Sbjct: 63  SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPYLSSQCVTLGSRKNKDYLTRARRLF 122

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
             +     GL +QTIHAFC  ++  FP+EA I  +  +    + K+L        L    
Sbjct: 123 SELENL--GLTIQTIHAFCYKLISSFPIEAGIAPNCTL---SECKELHSIIFNKVL---- 173

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
             +NE ++     I    ++  +  L+  +   R+
Sbjct: 174 --HNETVQDDINLIATEIDENKLRDLLYTLCIKRS 206


>gi|293393896|ref|ZP_06638203.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582]
 gi|291423723|gb|EFE96945.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582]
          Length = 723

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 5   DVSDLLNSMNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 63  VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   ++AN+   F I D E   +L++   +    ++ +D  + 
Sbjct: 85  QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRIVR----ALNIDEKQW 140

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 141 PPRQAMWYINGKKDDGLR 158


>gi|237727929|ref|ZP_04558410.1| DNA helicase II [Citrobacter sp. 30_2]
 gi|226910378|gb|EEH96296.1| DNA helicase II [Citrobacter sp. 30_2]
          Length = 738

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 20  DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMA 77

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +I+                                        +
Sbjct: 78  VTFTNKAAAEMRHRIGQIMGT--------------------------------------S 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 156 PPRQAMWFINSQKDEGLR 173


>gi|298530047|ref|ZP_07017449.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509421|gb|EFI33325.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1142

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +  +++  A DP RS  V A AGSGKT +L QR L LL     P  ++ +T T+ AA EM
Sbjct: 6   EDAAQRSQALDPKRSFIVQAPAGSGKTELLTQRTLALLCTVQAPEEVVAITFTRKAAGEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+L+ ++  +         E T +         + ++R L   +  +PG L++QTI +
Sbjct: 66  RTRILQALSRAADGETPGAPHEKTTL---DLAARVLERSRSLGWELESSPGRLRIQTIDS 122

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAFYEIL 196
            C  ++ + PL +++     I D     ++  +A +STLA +   + +    +++   +L
Sbjct: 123 LCSGLVSRMPLLSSLGGQGRINDNP--GEMYLQAARSTLAQLHNSSPDAGHWRESIRVLL 180

Query: 197 EISNDEDIET--LISDIISNRTA-LKLIFFFFSYLWRRKIIEKSL 238
              +++  +T  LI+ ++  R   L+ +    +   +R+ +E++L
Sbjct: 181 RHLDNDHDKTCRLIAGMLPQREKWLRHLADPGNSRLQRQYLEQAL 225


>gi|16767221|ref|NP_462836.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993889|ref|ZP_02574982.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197263905|ref|ZP_03163979.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|17865684|sp|Q05311|UVRD_SALTY RecName: Full=DNA helicase II
 gi|6960251|gb|AAF33441.1| 98% identity with E. coli DNA helicase (UVRD) (SP:P03018); contains
           similarity to Pfam family PF00580 (UvrD/REP helicase),
           score=812.9, E=1.2e-240, N=1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16422515|gb|AAL22795.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197242160|gb|EDY24780.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205328129|gb|EDZ14893.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249074|emb|CBG26935.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996230|gb|ACY91115.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160466|emb|CBW19996.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915069|dbj|BAJ39043.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225469|gb|EFX50526.1| ATP-dependent DNA helicase UvrD/PcrA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132298|gb|ADX19728.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 720

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|197247460|ref|YP_002148876.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211163|gb|ACH48560.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 720

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|330827780|ref|YP_004390732.1| DNA helicase II [Aeromonas veronii B565]
 gi|328802916|gb|AEB48115.1| DNA helicase II [Aeromonas veronii B565]
          Length = 723

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A  P  +  V A AGSGKT +LV R+  L+ +    P +++ 
Sbjct: 2   DVSTLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++I                                         
Sbjct: 60  VTFTNKAAAEMRGRVEKVIGDGVR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++   L+A +   F I D +   +LI    +  L ++ LD    
Sbjct: 84  --GMWIGTFHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLI----RRVLKALNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
             +A    +    DE +     D+  +   RT  ++   +     R  +++
Sbjct: 138 APRAVMGYINGKKDEGLRPGDIDLYGDPVTRTYQQIYETYQETCDRSGLVD 188


>gi|161505541|ref|YP_001572653.1| DNA-dependent helicase II [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866888|gb|ABX23511.1| hypothetical protein SARI_03706 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 720

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|16762183|ref|NP_457800.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143672|ref|NP_807014.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161539|ref|ZP_03347249.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425413|ref|ZP_03358163.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649574|ref|ZP_03379627.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865062|ref|ZP_03387181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25290775|pir||AG0918 DNA helicase II [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504486|emb|CAD07941.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139307|gb|AAO70874.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 720

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|205354488|ref|YP_002228289.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274269|emb|CAR39288.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 720

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|167553866|ref|ZP_02347610.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205321791|gb|EDZ09630.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 720

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|326629622|gb|EGE35965.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 720

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|319763161|ref|YP_004127098.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317117722|gb|ADV00211.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 1095

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 9/201 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R+LR LL  + P  +L +T TK AA EM  R+ E
Sbjct: 20  AIACDPARSVAVEACAGAGKTWMLVSRMLRALLDGSAPHEILAITFTKKAAGEMRQRLQE 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            +  ++H + E L  E+  +  G +  +    + R+L   +L +   L+++T H++  A+
Sbjct: 80  WLEQFAHAAPEDLEKELIARGIGTEAARGKREQLRNLYQQLLASGRPLQIRTFHSWFAAL 139

Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           +   PL       + +H+ + +++   K   E  +  L ++  D  + L+  +  I+ + 
Sbjct: 140 LSTAPLALLQERGLPTHYELLEDDAQAK--AEVWRPFLEAVAGD--DALRADYEAIVAVH 195

Query: 200 NDEDIETLISDIISNRTALKL 220
                   +   +  R    L
Sbjct: 196 GRSQTHKALEAALDKRVEFLL 216


>gi|56415805|ref|YP_152880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62182420|ref|YP_218837.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161617070|ref|YP_001591035.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168233884|ref|ZP_02658942.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168238404|ref|ZP_02663462.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168244640|ref|ZP_02669572.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168263159|ref|ZP_02685132.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168822679|ref|ZP_02834679.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194444550|ref|YP_002043181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451500|ref|YP_002047963.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470536|ref|ZP_03076520.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194734777|ref|YP_002116880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197364735|ref|YP_002144372.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198245946|ref|YP_002217880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388338|ref|ZP_03214950.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204930325|ref|ZP_03221302.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|207859153|ref|YP_002245804.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224585766|ref|YP_002639565.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912954|ref|ZP_04656791.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|56130062|gb|AAV79568.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130053|gb|AAX67756.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161366434|gb|ABX70202.1| hypothetical protein SPAB_04903 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403213|gb|ACF63435.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194409804|gb|ACF70023.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456900|gb|EDX45739.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194710279|gb|ACF89500.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197096212|emb|CAR61809.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197288763|gb|EDY28138.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940462|gb|ACH77795.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199605436|gb|EDZ03981.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204320729|gb|EDZ05931.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205332069|gb|EDZ18833.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336527|gb|EDZ23291.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340965|gb|EDZ27729.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205348080|gb|EDZ34711.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206710956|emb|CAR35324.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470294|gb|ACN48124.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|320088361|emb|CBY98121.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322613028|gb|EFY09979.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617384|gb|EFY14284.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625624|gb|EFY22446.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627047|gb|EFY23840.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631237|gb|EFY28000.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638270|gb|EFY34969.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642794|gb|EFY39381.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322650351|gb|EFY46764.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656358|gb|EFY52652.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657583|gb|EFY53853.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665994|gb|EFY62175.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666733|gb|EFY62910.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671024|gb|EFY67154.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679269|gb|EFY75321.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681673|gb|EFY77700.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686000|gb|EFY81988.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716913|gb|EFZ08484.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323192626|gb|EFZ77854.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196492|gb|EFZ81642.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203756|gb|EFZ88777.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205369|gb|EFZ90343.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210738|gb|EFZ95614.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215906|gb|EGA00639.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221399|gb|EGA05817.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323231768|gb|EGA15879.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236183|gb|EGA20260.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239580|gb|EGA23628.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244324|gb|EGA28332.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249579|gb|EGA33491.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250329|gb|EGA34215.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256536|gb|EGA40267.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259766|gb|EGA43399.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265174|gb|EGA48672.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268397|gb|EGA51869.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625668|gb|EGE32013.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 720

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|238926789|ref|ZP_04658549.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei
           ATCC 43531]
 gi|238885321|gb|EEQ48959.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei
           ATCC 43531]
          Length = 1260

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 24/224 (10%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           D ++ T  +Q        +  V+A AGSGKT +LV+R++  +         +L LT TKA
Sbjct: 3   DRLTFTADQQRAIDARGHNILVAAAAGSGKTRVLVERIISQVRNEELSLDRILVLTFTKA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   + A            I    G       + + R LL        G  +
Sbjct: 63  AALEMRERIEAALNA--------EIDAIAGDAGISKEIDRLERQRILLT-------GADI 107

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+FC+ ++Q      +I   F +A E++ + L  +     L     + ++E   AF 
Sbjct: 108 STFHSFCQRLLQAHIDATDIPPTFRLASEQEIRLLKRDVMDELLERKYEEASDEFL-AFA 166

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           +       +D E L  ++++      L  F  S       + + 
Sbjct: 167 DAYGGVKGDD-EKLKEEVLA------LYDFALSQPSPAVWLSRQ 203


>gi|298383180|ref|ZP_06992774.1| DNA helicase II [Escherichia coli FVEC1302]
 gi|298276416|gb|EFI17935.1| DNA helicase II [Escherichia coli FVEC1302]
          Length = 722

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 4   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 62  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 84  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PPRQAMWYINSQKDEGLR 157


>gi|168467634|ref|ZP_02701471.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195629989|gb|EDX48649.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 720

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|330825224|ref|YP_004388527.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329310596|gb|AEB85011.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 1095

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 9/201 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R+LR LL  + P  +L +T TK AA EM  R+ E
Sbjct: 20  AIACDPARSVAVEACAGAGKTWMLVSRMLRALLDGSAPHEILAITFTKKAAGEMRQRLQE 79

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            +  ++H + E L  E+  +  G +  +    + R+L   +L +   L+++T H++  A+
Sbjct: 80  WLEQFAHAAPEDLEKELIARGIGLEAARGKREQLRNLYQQLLASGRPLQIRTFHSWFAAL 139

Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           +   PL       + +H+ + +++   K   E  +  L ++  D  + L+  +  I+ + 
Sbjct: 140 LSTAPLALLQERGLPTHYELLEDDAQAK--AEVWRPFLEAVAGD--DALRADYEAIVAVH 195

Query: 200 NDEDIETLISDIISNRTALKL 220
                   +   +  R    L
Sbjct: 196 GRSQTHKALEAALDKRVEFLL 216


>gi|43297|emb|CAA25321.1| pot. DNA helicase II [Escherichia coli]
          Length = 720

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|283787510|ref|YP_003367375.1| DNA helicase II [Citrobacter rodentium ICC168]
 gi|282950964|emb|CBG90641.1| DNA helicase II [Citrobacter rodentium ICC168]
          Length = 720

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD+ + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLMKAMNLDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGQKDEGLR 155


>gi|331655498|ref|ZP_08356491.1| DNA helicase II [Escherichia coli M718]
 gi|331046819|gb|EGI18903.1| DNA helicase II [Escherichia coli M718]
          Length = 722

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 4   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 62  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 84  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PPRQAMWYINSQKDEGLR 157


>gi|117619159|ref|YP_854747.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560566|gb|ABK37514.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 723

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A  P  +  V A AGSGKT +LV R+  L+ +    P +++ 
Sbjct: 2   DVSTLLDGLNDKQRDAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++I                                         
Sbjct: 60  VTFTNKAAAEMRGRVEKVIGDGVR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++   L+A +   F I D +   +LI    +  L ++ LD    
Sbjct: 84  --GMWIGTFHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLI----RRVLKALNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
             +A    +    DE +     D+  +   RT  ++   +     R  +++
Sbjct: 138 APRAVMGYINGKKDEGLRPGDIDLYGDPVTRTYQQIYKTYQETCDRSGLVD 188


>gi|145301020|ref|YP_001143861.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853792|gb|ABO92113.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 723

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A  P  +  V A AGSGKT +LV R+  L+ +    P +++ 
Sbjct: 2   DVSTLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV +++ +                                       
Sbjct: 60  VTFTNKAAAEMRGRVEKVLGSMQR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++   L+A +   F I D +   +LI    +  + ++ LD    
Sbjct: 84  --GMWIGTFHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLI----RRVIKALNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
             +A    +    DE +     D+  +   RT  ++   +     R  +++
Sbjct: 138 APRAVMSYINGKKDEGLRPGDIDLYGDPVTRTYQQIYKTYQETCDRSGLVD 188


>gi|322646964|gb|EFY43466.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|323227583|gb|EGA11739.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 720

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|293407440|ref|ZP_06651360.1| DNA helicase II [Escherichia coli FVEC1412]
 gi|291425551|gb|EFE98589.1| DNA helicase II [Escherichia coli FVEC1412]
          Length = 722

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 4   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 62  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 84  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PPRQAMWYINSQKDEGLR 157


>gi|260596037|ref|YP_003208608.1| DNA-dependent helicase II [Cronobacter turicensis z3032]
 gi|260215214|emb|CBA27073.1| DNA helicase II [Cronobacter turicensis z3032]
          Length = 736

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 45/200 (22%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTL 65
             + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L ++ N  P ++
Sbjct: 16  LMDVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLMMVENCSPYSI 73

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           + +T T  AAAEM HR+ +++                                       
Sbjct: 74  MAVTFTNKAAAEMRHRIGQLMGT------------------------------------- 96

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  
Sbjct: 97  -SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEK 151

Query: 186 EELKKAFYEILEISNDEDIE 205
           +   +     +    D+ + 
Sbjct: 152 QWPPRQAMWYINGKKDDGLR 171


>gi|254039025|ref|ZP_04873076.1| DNA helicase II [Escherichia sp. 1_1_43]
 gi|226838716|gb|EEH70744.1| DNA helicase II [Escherichia sp. 1_1_43]
          Length = 738

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 20  DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 77

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 78  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 156 PPRQAMWYINSQKDEGLR 173


>gi|56419217|ref|YP_146535.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
           HTA426]
 gi|81558057|sp|Q5L263|ADDA_GEOKA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|56379059|dbj|BAD74967.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
           HTA426]
          Length = 1242

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 33/219 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75
            T  +    +   R   V+A AGSGKT +LV+R+++ + A         LL +T T AAA
Sbjct: 14  WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                +   K+P+   + +   LL           + T
Sbjct: 74  AEMKARIGEAL---------------ERELAKRPHSLHLRRQLSLLPRA-------AIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++    ++   F IADE + + L E+  +  L       + E    F+ +
Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKPDNER---FFAV 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           ++    +  +  + ++I     + L  F  S+    + +
Sbjct: 169 VDAYTGDRSDAELQEMI-----VALYEFSRSHPEPDEWL 202


>gi|331644546|ref|ZP_08345666.1| DNA helicase II [Escherichia coli H736]
 gi|331679923|ref|ZP_08380586.1| DNA helicase II [Escherichia coli H591]
 gi|331036218|gb|EGI08453.1| DNA helicase II [Escherichia coli H736]
 gi|331072470|gb|EGI43802.1| DNA helicase II [Escherichia coli H591]
 gi|332105031|gb|EGJ08377.1| DNA helicase II [Shigella sp. D9]
          Length = 722

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 4   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 62  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 84  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PPRQAMWYINSQKDEGLR 157


>gi|237702822|ref|ZP_04533303.1| DNA helicase II [Escherichia sp. 3_2_53FAA]
 gi|26110983|gb|AAN83167.1|AE016769_282 DNA helicase II [Escherichia coli CFT073]
 gi|91074912|gb|ABE09793.1| DNA helicase II [Escherichia coli UTI89]
 gi|226902993|gb|EEH89252.1| DNA helicase II [Escherichia sp. 3_2_53FAA]
          Length = 738

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 20  DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 77

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 78  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 156 PPRQAMWYINSQKDEGLR 173


>gi|331649638|ref|ZP_08350720.1| DNA helicase II [Escherichia coli M605]
 gi|331675280|ref|ZP_08376031.1| DNA helicase II [Escherichia coli TA280]
 gi|331041508|gb|EGI13656.1| DNA helicase II [Escherichia coli M605]
 gi|331067566|gb|EGI38970.1| DNA helicase II [Escherichia coli TA280]
          Length = 722

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 4   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 62  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 84  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PPRQAMWYINSQKDEGLR 157


>gi|309807505|ref|ZP_07701464.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
 gi|308169255|gb|EFO71314.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
          Length = 491

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 35/216 (16%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA+EM  R+   I        
Sbjct: 1   MVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAASEMKLRIKNAIKNKIKEQP 60

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           + L                       L   L       + TI +FC  ++++F    N+ 
Sbjct: 61  DNL----------------------FLKQQLAKVDIANISTIDSFCLEVIRKFYYVINLD 98

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS- 213
            +F+I  ++    L++E           +N ++    FY     + D ++E   S ++  
Sbjct: 99  PNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN--NFAGDREVEAARSMLLEL 156

Query: 214 --------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
                   N  A   +L FF+   + +  II  +LW
Sbjct: 157 YYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 192


>gi|156935862|ref|YP_001439778.1| DNA-dependent helicase II [Cronobacter sakazakii ATCC BAA-894]
 gi|156534116|gb|ABU78942.1| hypothetical protein ESA_03745 [Cronobacter sakazakii ATCC BAA-894]
          Length = 720

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L ++ N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLMMVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAMWYINGKKDDGLR 155


>gi|157158058|ref|YP_001465297.1| DNA-dependent helicase II [Escherichia coli E24377A]
 gi|157080088|gb|ABV19796.1| DNA helicase II [Escherichia coli E24377A]
          Length = 720

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|290513159|ref|ZP_06552521.1| DNA helicase II [Klebsiella sp. 1_1_55]
 gi|289774370|gb|EFD82376.1| DNA helicase II [Klebsiella sp. 1_1_55]
          Length = 722

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + AS    +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 4   DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        T
Sbjct: 62  VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 84  QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PPRQAMWYINSQKDEGLR 157


>gi|325499218|gb|EGC97077.1| DNA helicase II [Escherichia fergusonii ECD227]
          Length = 738

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 20  DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 77

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 78  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 156 PPRQAMWYINSQKDEGLR 173


>gi|331685533|ref|ZP_08386117.1| DNA helicase II [Escherichia coli H299]
 gi|331077234|gb|EGI48448.1| DNA helicase II [Escherichia coli H299]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|293417279|ref|ZP_06659904.1| DNA helicase II [Escherichia coli B185]
 gi|291431047|gb|EFF04042.1| DNA helicase II [Escherichia coli B185]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|82779008|ref|YP_405357.1| DNA-dependent helicase II [Shigella dysenteriae Sd197]
 gi|309784529|ref|ZP_07679167.1| DNA helicase II [Shigella dysenteriae 1617]
 gi|81243156|gb|ABB63866.1| DNA-dependent ATPase I and helicase II [Shigella dysenteriae Sd197]
 gi|308927635|gb|EFP73104.1| DNA helicase II [Shigella dysenteriae 1617]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|157163290|ref|YP_001460608.1| DNA-dependent helicase II [Escherichia coli HS]
 gi|170022164|ref|YP_001727118.1| DNA-dependent helicase II [Escherichia coli ATCC 8739]
 gi|188494883|ref|ZP_03002153.1| DNA helicase II [Escherichia coli 53638]
 gi|193067953|ref|ZP_03048918.1| DNA helicase II [Escherichia coli E110019]
 gi|218556376|ref|YP_002389290.1| DNA-dependent helicase II [Escherichia coli IAI1]
 gi|260857781|ref|YP_003231672.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O26:H11 str. 11368]
 gi|260870538|ref|YP_003236940.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O111:H- str. 11128]
 gi|157068970|gb|ABV08225.1| DNA helicase II [Escherichia coli HS]
 gi|169757092|gb|ACA79791.1| DNA helicase II [Escherichia coli ATCC 8739]
 gi|188490082|gb|EDU65185.1| DNA helicase II [Escherichia coli 53638]
 gi|192958573|gb|EDV89011.1| DNA helicase II [Escherichia coli E110019]
 gi|218363145|emb|CAR00786.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI1]
 gi|257756430|dbj|BAI27932.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O26:H11 str. 11368]
 gi|257766894|dbj|BAI38389.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O111:H- str. 11128]
 gi|323155219|gb|EFZ41403.1| DNA helicase II [Escherichia coli EPECa14]
 gi|323173428|gb|EFZ59057.1| DNA helicase II [Escherichia coli LT-68]
 gi|323177826|gb|EFZ63410.1| DNA helicase II [Escherichia coli 1180]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|302874683|ref|YP_003843316.1| recombination helicase AddA [Clostridium cellulovorans 743B]
 gi|307690704|ref|ZP_07633150.1| recombination helicase AddA [Clostridium cellulovorans 743B]
 gi|302577540|gb|ADL51552.1| recombination helicase AddA [Clostridium cellulovorans 743B]
          Length = 1287

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 32/226 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75
            T+ ++        +  V+A AGSGKT +LV+R++ L+           LL +T TKAAA
Sbjct: 9   WTEEQKAAIDTHGVNLLVAAAAGSGKTAVLVERIIELVSNKEAKTDIDKLLVVTFTKAAA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+   +                    + P+ + + +   LL           + T
Sbjct: 69  AEMRERIGNALAEKIS---------------ENPDDTHLHRQLVLL-------NKANITT 106

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC+++++ +  + +I   F I D  + + L+ E  +  L     + N  +   F  +
Sbjct: 107 MHSFCQSLIKNYFHKLDIDPAFRIGDATEIELLLLETIEEVLEECYKEEN--ITIGFQRL 164

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +E     + +  + D+I     ++L  F  +  W    +EK + + 
Sbjct: 165 VEGYGKNEDDKSVQDVI-----IRLYRFVMAMPWPESYLEKVVEAY 205


>gi|317494833|ref|ZP_07953244.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917158|gb|EFV38506.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLNSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D +   +L++   K    ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRIVK----ALNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQGMWYINNKKDDGLR 155


>gi|320191094|gb|EFW65744.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str.
           EC1212]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|187733738|ref|YP_001882507.1| DNA-dependent helicase II [Shigella boydii CDC 3083-94]
 gi|187430730|gb|ACD10004.1| DNA helicase II [Shigella boydii CDC 3083-94]
 gi|320176055|gb|EFW51124.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella dysenteriae CDC
           74-1112]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|30064891|ref|NP_839062.1| DNA-dependent helicase II [Shigella flexneri 2a str. 2457T]
 gi|56480441|ref|NP_709620.2| DNA-dependent helicase II [Shigella flexneri 2a str. 301]
 gi|110807496|ref|YP_691016.1| DNA-dependent helicase II [Shigella flexneri 5 str. 8401]
 gi|30043151|gb|AAP18873.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str.
           2457T]
 gi|56383992|gb|AAN45327.2| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str.
           301]
 gi|110617044|gb|ABF05711.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 5 str.
           8401]
 gi|281603206|gb|ADA76190.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2002017]
 gi|313647145|gb|EFS11600.1| DNA helicase II [Shigella flexneri 2a str. 2457T]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|292670883|ref|ZP_06604309.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC
           43541]
 gi|292647504|gb|EFF65476.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC
           43541]
          Length = 1256

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 24/224 (10%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           +  T  +Q       ++  V+A AGSGKT +LV+R++  +         +L LT TKAAA
Sbjct: 5   MQFTADQQKAIETRGQNILVAAAAGSGKTRVLVERIISQVRTGTLSLDRILVLTFTKAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   + A   +        I +  G   + + + + R LL        G  + T
Sbjct: 65  SEMRERIEAALNAEIDV--------IVENGGALEDVAALERQRVLLT-------GADIST 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+FC+ ++Q       I   F IA E++ + L  +  +  + S          + F   
Sbjct: 110 FHSFCQHLIQSHIDATEIPPTFRIASEQEIRLLKNDVFEQMIESEYEKAAAGDPEGFLSF 169

Query: 196 LEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            +       D E L  +I++      L  F  S       +   
Sbjct: 170 SDAYGGVKGDDEKLQGEILA------LHAFSLSQPSPVTWLAAQ 207


>gi|309796243|ref|ZP_07690653.1| DNA helicase II [Escherichia coli MS 145-7]
 gi|308120125|gb|EFO57387.1| DNA helicase II [Escherichia coli MS 145-7]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|300921476|ref|ZP_07137824.1| DNA helicase II [Escherichia coli MS 115-1]
 gi|300411593|gb|EFJ94903.1| DNA helicase II [Escherichia coli MS 115-1]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|218707447|ref|YP_002414966.1| DNA-dependent helicase II [Escherichia coli UMN026]
 gi|331665463|ref|ZP_08366362.1| DNA helicase II [Escherichia coli TA143]
 gi|218434544|emb|CAR15471.1| DNA-dependent ATPase I and helicase II [Escherichia coli UMN026]
 gi|331057361|gb|EGI29350.1| DNA helicase II [Escherichia coli TA143]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|16131665|ref|NP_418258.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. MG1655]
 gi|89110206|ref|AP_003986.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. W3110]
 gi|170083295|ref|YP_001732615.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. DH10B]
 gi|193065672|ref|ZP_03046737.1| DNA helicase II [Escherichia coli E22]
 gi|194429230|ref|ZP_03061758.1| DNA helicase II [Escherichia coli B171]
 gi|194434041|ref|ZP_03066311.1| DNA helicase II [Shigella dysenteriae 1012]
 gi|218697531|ref|YP_002405198.1| DNA-dependent helicase II [Escherichia coli 55989]
 gi|238902889|ref|YP_002928685.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952]
 gi|256021443|ref|ZP_05435308.1| DNA-dependent helicase II [Shigella sp. D9]
 gi|256026160|ref|ZP_05440025.1| DNA-dependent helicase II [Escherichia sp. 4_1_40B]
 gi|260846411|ref|YP_003224189.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O103:H2 str. 12009]
 gi|293468131|ref|ZP_06664543.1| DNA helicase II [Escherichia coli B088]
 gi|300818716|ref|ZP_07098923.1| DNA helicase II [Escherichia coli MS 107-1]
 gi|300823349|ref|ZP_07103480.1| DNA helicase II [Escherichia coli MS 119-7]
 gi|300923317|ref|ZP_07139365.1| DNA helicase II [Escherichia coli MS 182-1]
 gi|300955181|ref|ZP_07167578.1| DNA helicase II [Escherichia coli MS 175-1]
 gi|301646119|ref|ZP_07246019.1| DNA helicase II [Escherichia coli MS 146-1]
 gi|307140512|ref|ZP_07499868.1| DNA-dependent helicase II [Escherichia coli H736]
 gi|307313613|ref|ZP_07593233.1| DNA helicase II [Escherichia coli W]
 gi|312971900|ref|ZP_07786074.1| DNA helicase II [Escherichia coli 1827-70]
 gi|331670659|ref|ZP_08371496.1| DNA helicase II [Escherichia coli TA271]
 gi|137194|sp|P03018|UVRD_ECOLI RecName: Full=DNA helicase II
 gi|43299|emb|CAA27671.1| unnamed protein product [Escherichia coli]
 gi|2367296|gb|AAC76816.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. MG1655]
 gi|85676237|dbj|BAE77487.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K12
           substr. W3110]
 gi|169891130|gb|ACB04837.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. DH10B]
 gi|192926639|gb|EDV81268.1| DNA helicase II [Escherichia coli E22]
 gi|194412742|gb|EDX29036.1| DNA helicase II [Escherichia coli B171]
 gi|194417699|gb|EDX33798.1| DNA helicase II [Shigella dysenteriae 1012]
 gi|218354263|emb|CAV00941.1| DNA-dependent ATPase I and helicase II [Escherichia coli 55989]
 gi|238860998|gb|ACR62996.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952]
 gi|257761558|dbj|BAI33055.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O103:H2 str. 12009]
 gi|260451344|gb|ACX41766.1| DNA helicase II [Escherichia coli DH1]
 gi|291321509|gb|EFE60947.1| DNA helicase II [Escherichia coli B088]
 gi|300317898|gb|EFJ67682.1| DNA helicase II [Escherichia coli MS 175-1]
 gi|300420403|gb|EFK03714.1| DNA helicase II [Escherichia coli MS 182-1]
 gi|300524135|gb|EFK45204.1| DNA helicase II [Escherichia coli MS 119-7]
 gi|300528682|gb|EFK49744.1| DNA helicase II [Escherichia coli MS 107-1]
 gi|301075645|gb|EFK90451.1| DNA helicase II [Escherichia coli MS 146-1]
 gi|306906594|gb|EFN37106.1| DNA helicase II [Escherichia coli W]
 gi|309704248|emb|CBJ03596.1| DNA helicase II [Escherichia coli ETEC H10407]
 gi|310334277|gb|EFQ00482.1| DNA helicase II [Escherichia coli 1827-70]
 gi|315063105|gb|ADT77432.1| DNA-dependent ATPase I and helicase II [Escherichia coli W]
 gi|315138390|dbj|BAJ45549.1| DNA-dependent helicase II [Escherichia coli DH1]
 gi|315618489|gb|EFU99075.1| DNA helicase II [Escherichia coli 3431]
 gi|320198480|gb|EFW73081.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli EC4100B]
 gi|323161123|gb|EFZ47041.1| DNA helicase II [Escherichia coli E128010]
 gi|323182585|gb|EFZ67989.1| DNA helicase II [Escherichia coli 1357]
 gi|323380831|gb|ADX53099.1| DNA helicase II [Escherichia coli KO11]
 gi|323934201|gb|EGB30632.1| DNA helicase II [Escherichia coli E1520]
 gi|323938949|gb|EGB35168.1| DNA helicase II [Escherichia coli E482]
 gi|324115724|gb|EGC09659.1| DNA helicase II [Escherichia coli E1167]
 gi|331062132|gb|EGI34054.1| DNA helicase II [Escherichia coli TA271]
 gi|332084961|gb|EGI90143.1| DNA helicase II [Shigella dysenteriae 155-74]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|206579213|ref|YP_002241124.1| DNA helicase II [Klebsiella pneumoniae 342]
 gi|288937764|ref|YP_003441823.1| DNA helicase II [Klebsiella variicola At-22]
 gi|206568271|gb|ACI10047.1| DNA helicase II [Klebsiella pneumoniae 342]
 gi|288892473|gb|ADC60791.1| DNA helicase II [Klebsiella variicola At-22]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + AS    +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        T
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|15804402|ref|NP_290442.1| DNA-dependent helicase II [Escherichia coli O157:H7 EDL933]
 gi|15833997|ref|NP_312770.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. Sakai]
 gi|74314325|ref|YP_312744.1| DNA-dependent helicase II [Shigella sonnei Ss046]
 gi|110644138|ref|YP_671868.1| DNA-dependent helicase II [Escherichia coli 536]
 gi|117626072|ref|YP_859395.1| DNA-dependent helicase II [Escherichia coli APEC O1]
 gi|161486051|ref|NP_756593.2| DNA-dependent helicase II [Escherichia coli CFT073]
 gi|162138327|ref|YP_543324.2| DNA-dependent helicase II [Escherichia coli UTI89]
 gi|168750375|ref|ZP_02775397.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113]
 gi|168753710|ref|ZP_02778717.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401]
 gi|168768094|ref|ZP_02793101.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486]
 gi|168775636|ref|ZP_02800643.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196]
 gi|168780712|ref|ZP_02805719.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076]
 gi|168786651|ref|ZP_02811658.1| DNA helicase II [Escherichia coli O157:H7 str. EC869]
 gi|168801123|ref|ZP_02826130.1| DNA helicase II [Escherichia coli O157:H7 str. EC508]
 gi|170679582|ref|YP_001746130.1| DNA-dependent helicase II [Escherichia coli SMS-3-5]
 gi|191174264|ref|ZP_03035773.1| DNA helicase II [Escherichia coli F11]
 gi|194438675|ref|ZP_03070763.1| DNA helicase II [Escherichia coli 101-1]
 gi|195938102|ref|ZP_03083484.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. EC4024]
 gi|208807358|ref|ZP_03249695.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206]
 gi|208813979|ref|ZP_03255308.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045]
 gi|208819804|ref|ZP_03260124.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042]
 gi|209396002|ref|YP_002273330.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115]
 gi|215489141|ref|YP_002331572.1| DNA-dependent helicase II [Escherichia coli O127:H6 str. E2348/69]
 gi|218550963|ref|YP_002384754.1| DNA-dependent helicase II [Escherichia fergusonii ATCC 35469]
 gi|227888602|ref|ZP_04006407.1| excision endonuclease subunit UvrD [Escherichia coli 83972]
 gi|253775563|ref|YP_003038394.1| DNA-dependent helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163755|ref|YP_003046863.1| DNA-dependent helicase II [Escherichia coli B str. REL606]
 gi|254795809|ref|YP_003080646.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. TW14359]
 gi|261225587|ref|ZP_05939868.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255633|ref|ZP_05948166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285227|ref|YP_003502045.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615]
 gi|293413255|ref|ZP_06655917.1| DNA helicase II [Escherichia coli B354]
 gi|301025742|ref|ZP_07189257.1| DNA helicase II [Escherichia coli MS 69-1]
 gi|301047305|ref|ZP_07194391.1| DNA helicase II [Escherichia coli MS 185-1]
 gi|306815148|ref|ZP_07449301.1| DNA-dependent helicase II [Escherichia coli NC101]
 gi|312969459|ref|ZP_07783661.1| DNA helicase II [Escherichia coli 2362-75]
 gi|331660158|ref|ZP_08361094.1| DNA helicase II [Escherichia coli TA206]
 gi|12518681|gb|AAG59006.1|AE005612_9 DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. EDL933]
 gi|13364219|dbj|BAB38166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. Sakai]
 gi|73857802|gb|AAZ90509.1| DNA-dependent ATPase I and helicase II [Shigella sonnei Ss046]
 gi|110345730|gb|ABG71967.1| DNA helicase II [Escherichia coli 536]
 gi|115515196|gb|ABJ03271.1| DNA-dependent ATPase I and helicase II [Escherichia coli APEC O1]
 gi|170517300|gb|ACB15478.1| DNA helicase II [Escherichia coli SMS-3-5]
 gi|187768818|gb|EDU32662.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196]
 gi|188015427|gb|EDU53549.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113]
 gi|189001426|gb|EDU70412.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076]
 gi|189359023|gb|EDU77442.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401]
 gi|189362636|gb|EDU81055.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486]
 gi|189373276|gb|EDU91692.1| DNA helicase II [Escherichia coli O157:H7 str. EC869]
 gi|189376660|gb|EDU95076.1| DNA helicase II [Escherichia coli O157:H7 str. EC508]
 gi|190905447|gb|EDV65077.1| DNA helicase II [Escherichia coli F11]
 gi|194422479|gb|EDX38478.1| DNA helicase II [Escherichia coli 101-1]
 gi|208727159|gb|EDZ76760.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206]
 gi|208735256|gb|EDZ83943.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045]
 gi|208739927|gb|EDZ87609.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042]
 gi|209157402|gb|ACI34835.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115]
 gi|209753228|gb|ACI74921.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753230|gb|ACI74922.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753232|gb|ACI74923.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753234|gb|ACI74924.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753236|gb|ACI74925.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|215267213|emb|CAS11661.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218358504|emb|CAQ91151.1| DNA-dependent ATPase I and helicase II [Escherichia fergusonii ATCC
           35469]
 gi|227834441|gb|EEJ44907.1| excision endonuclease subunit UvrD [Escherichia coli 83972]
 gi|242379343|emb|CAQ34155.1| DNA-dependent ATPase I and helicase II, subunit of UvrABC
           Nucleotide Excision Repair Complex [Escherichia coli
           BL21(DE3)]
 gi|253326607|gb|ACT31209.1| DNA helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975656|gb|ACT41327.1| DNA-dependent ATPase I and helicase II [Escherichia coli B str.
           REL606]
 gi|253979812|gb|ACT45482.1| DNA-dependent ATPase I and helicase II [Escherichia coli BL21(DE3)]
 gi|254595209|gb|ACT74570.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. TW14359]
 gi|281180862|dbj|BAI57192.1| DNA helicase II [Escherichia coli SE15]
 gi|284923921|emb|CBG37020.1| DNA helicase II [Escherichia coli 042]
 gi|290765100|gb|ADD59061.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615]
 gi|291468203|gb|EFF10700.1| DNA helicase II [Escherichia coli B354]
 gi|294492576|gb|ADE91332.1| DNA helicase II [Escherichia coli IHE3034]
 gi|300300824|gb|EFJ57209.1| DNA helicase II [Escherichia coli MS 185-1]
 gi|300395865|gb|EFJ79403.1| DNA helicase II [Escherichia coli MS 69-1]
 gi|305851517|gb|EFM51971.1| DNA-dependent helicase II [Escherichia coli NC101]
 gi|307555939|gb|ADN48714.1| DNA helicase II [Escherichia coli ABU 83972]
 gi|307628876|gb|ADN73180.1| DNA-dependent helicase II [Escherichia coli UM146]
 gi|312286006|gb|EFR13924.1| DNA helicase II [Escherichia coli 2362-75]
 gi|315296794|gb|EFU56086.1| DNA helicase II [Escherichia coli MS 16-3]
 gi|320197622|gb|EFW72234.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli WV_060327]
 gi|320639296|gb|EFX08918.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. G5101]
 gi|320644681|gb|EFX13731.1| DNA-dependent helicase II [Escherichia coli O157:H- str. 493-89]
 gi|320650006|gb|EFX18509.1| DNA-dependent helicase II [Escherichia coli O157:H- str. H 2687]
 gi|320655352|gb|EFX23294.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320660978|gb|EFX28421.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666102|gb|EFX33116.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. LSU-61]
 gi|323167561|gb|EFZ53267.1| DNA helicase II [Shigella sonnei 53G]
 gi|323189761|gb|EFZ75040.1| DNA helicase II [Escherichia coli RN587/1]
 gi|323949303|gb|EGB45193.1| DNA helicase II [Escherichia coli H252]
 gi|323954020|gb|EGB49818.1| DNA helicase II [Escherichia coli H263]
 gi|323959068|gb|EGB54737.1| DNA helicase II [Escherichia coli H489]
 gi|323969346|gb|EGB64645.1| DNA helicase II [Escherichia coli TA007]
 gi|323974395|gb|EGB69523.1| DNA helicase II [Escherichia coli TW10509]
 gi|324111038|gb|EGC05025.1| DNA helicase II [Escherichia fergusonii B253]
 gi|326344269|gb|EGD68029.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str.
           1125]
 gi|326347903|gb|EGD71617.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str.
           1044]
 gi|330908113|gb|EGH36632.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli AA86]
 gi|331052726|gb|EGI24761.1| DNA helicase II [Escherichia coli TA206]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|323964058|gb|EGB59548.1| DNA helicase II [Escherichia coli M863]
 gi|327250663|gb|EGE62369.1| DNA helicase II [Escherichia coli STEC_7v]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|300812417|ref|ZP_07092847.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496584|gb|EFK31676.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 1227

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 26/222 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +  T  +        +   VSA+AGSGKT +LV+RV+R ++  +   + LL +T T+AAA
Sbjct: 3   VKYTPDQARAIESRGQDILVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + +        +   A+                    L   L       + T
Sbjct: 63  SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    +I   F+I  +    +L++E A +      + + ++  K  F  
Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + +    +       D++     L L  F  +    R  ++K
Sbjct: 164 LYDAFAGDSNANSARDLL-----LDLYQFAMARPNYRAWLQK 200


>gi|307692433|ref|ZP_07634670.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ruminococcaceae
           bacterium D16]
          Length = 1206

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 36/227 (15%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T+ ++ +  D      VSA AGSGKT +LV+R+L  +       +  L +T+TKAAAAE+
Sbjct: 6   TEEQRKIVDDRGGELLVSAAAGSGKTRVLVERLLDRVTGEGLDITQFLVITYTKAAAAEL 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +               E+++   + PN   + +   L+          ++ TIHA
Sbjct: 66  RGRIAQ---------------ELSQRLAQNPNDRHLRRQTTLVYQA-------QISTIHA 103

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--NNEELKKAFYEIL 196
           FC A++++     ++   F + DE +   +  +  +  L     +    ++       + 
Sbjct: 104 FCAALLRESGHLLDLDPDFRLCDEGEGAVMTAQVLQDVLEEQYENLQEGDDFSLLVDTLA 163

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII--EKSLWSI 241
              +D  +E ++ D+              S+    + +  +K++W++
Sbjct: 164 AGRDDSRLEQIVLDVFGR---------IQSHPDPAQWLFEQKAVWAL 201


>gi|297531123|ref|YP_003672398.1| recombination helicase AddA [Geobacillus sp. C56-T3]
 gi|297254375|gb|ADI27821.1| recombination helicase AddA [Geobacillus sp. C56-T3]
          Length = 1242

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 33/219 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75
            T  +    +   R   V+A AGSGKT +LV+R+++ + A         LL +T T AAA
Sbjct: 14  WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                +   K+P+   + +   LL           + T
Sbjct: 74  AEMKARIGEAL---------------ERELAKRPHSLHLRRQLSLLPRA-------AIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++    ++   F IADE + + L E+  +  L       + E    F+ +
Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKPDNER---FFAV 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           ++    +  +  + ++I     + L  F  S+    + +
Sbjct: 169 VDAYTGDRSDAELQEMI-----VALYEFSRSHPEPDEWL 202


>gi|167631017|ref|YP_001681516.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium
           modesticaldum Ice1]
 gi|251764526|sp|B0TDI0|ADDA_HELMI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|167593757|gb|ABZ85505.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium
           modesticaldum Ice1]
          Length = 1396

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 32/225 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +    +       V+A AG+GKT +LV+R++ ++        LL +T T AAAAEM
Sbjct: 28  WTDEQWQAITARNSDILVAAAAGAGKTAVLVERLIGIIKEGVDVDRLLVVTFTNAAAAEM 87

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                  +TK   + P+++ + +   LL           + T+H+
Sbjct: 88  RERIR---------------TALTKELARHPHQTWLRQQLVLL-------NRATITTLHS 125

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-----DNNEELKKAFY 193
           FC  +++++    ++   F +ADE +   L ++                +  E   + F 
Sbjct: 126 FCLDLVRKYYYRLDLDPAFRVADETEIALLRQDVLDEVFERFYERAGAKEGTESKGEYFT 185

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            +++    +  ++ + DI+     L+L     S  W  + ++  L
Sbjct: 186 ALVDAYGGDRDDSPLQDIV-----LQLYEKALSQPWPEQWLQDIL 225


>gi|300904068|ref|ZP_07121948.1| DNA helicase II [Escherichia coli MS 84-1]
 gi|301303709|ref|ZP_07209830.1| DNA helicase II [Escherichia coli MS 124-1]
 gi|300403948|gb|EFJ87486.1| DNA helicase II [Escherichia coli MS 84-1]
 gi|300841009|gb|EFK68769.1| DNA helicase II [Escherichia coli MS 124-1]
 gi|315254178|gb|EFU34146.1| DNA helicase II [Escherichia coli MS 85-1]
          Length = 720

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|261418926|ref|YP_003252608.1| recombination helicase AddA [Geobacillus sp. Y412MC61]
 gi|319765743|ref|YP_004131244.1| recombination helicase AddA [Geobacillus sp. Y412MC52]
 gi|261375383|gb|ACX78126.1| recombination helicase AddA [Geobacillus sp. Y412MC61]
 gi|317110609|gb|ADU93101.1| recombination helicase AddA [Geobacillus sp. Y412MC52]
          Length = 1242

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 33/219 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75
            T  +    +   R   V+A AGSGKT +LV+R+++ + A         LL +T T AAA
Sbjct: 14  WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                +   K+P+   + +   LL           + T
Sbjct: 74  AEMKARIGEAL---------------ERELAKRPHSLHLRRQLSLLPRA-------AIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++    ++   F IADE + + L E+  +  L       + E    F+ +
Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKPDNER---FFAV 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           ++    +  +  + ++I     + L  F  S+    + +
Sbjct: 169 VDAYTGDRSDAELQEMI-----VALYEFSRSHPEPDEWL 202


>gi|325125706|gb|ADY85036.1| ATP-dependent exonuclease subunit A [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 1227

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 26/222 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +  T  +        +   VSA+AGSGKT +LV+RV+R ++  +   + LL +T T+AAA
Sbjct: 3   VKYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + +        +   A+                    L   L       + T
Sbjct: 63  SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    +I   F+I  +    +L++E A +      + + ++  K  F  
Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + +    +       D++       L  F  +    R  ++K
Sbjct: 164 LYDAFAGDSNANSARDLL-----FDLYQFAMARPNYRAWLQK 200


>gi|238018401|ref|ZP_04598827.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748]
 gi|237864872|gb|EEP66162.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748]
          Length = 1266

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 37/232 (15%)

Query: 16  LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66
            +  T  ++     P  S        V+A AGSGKT +LV+R++  L    +P     L+
Sbjct: 2   GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMDNPLSVQELM 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T TKAAA EMS R+   +      +D+                      +  L   L 
Sbjct: 62  VVTFTKAAAQEMSARIGLALAKAMESTDD-------------------EAMQQRLERQLN 102

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T+H+FC+ +++ +  + +I     I +E +   L +E     LA ++  + E
Sbjct: 103 LLPSAHISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           E     YE+ +  +D+  +  ++  I     + L  +  S       + K+L
Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205


>gi|226326684|ref|ZP_03802202.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198]
 gi|225204905|gb|EEG87259.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198]
          Length = 506

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ 
Sbjct: 2   DVSYLLEGLNDKQREAVAA--PRINMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEDLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H+    +++   L+AN+   F I D +   +LI    KS      LD+ + 
Sbjct: 82  QGGMWIGTFHSLAHRLLRAHYLDANLPQDFQIIDSDDQYRLIRRIVKSM----NLDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|222035511|emb|CAP78256.1| DNA helicase II [Escherichia coli LF82]
 gi|312948366|gb|ADR29193.1| DNA-dependent helicase II [Escherichia coli O83:H1 str. NRG 857C]
          Length = 720

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|238892413|ref|YP_002917147.1| DNA-dependent helicase II [Klebsiella pneumoniae NTUH-K2044]
 gi|238544729|dbj|BAH61080.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 722

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + AS    +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 4   DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        T
Sbjct: 62  VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 84  QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PPRQAMWYINSQKDEGLR 157


>gi|191166051|ref|ZP_03027886.1| DNA helicase II [Escherichia coli B7A]
 gi|190903827|gb|EDV63541.1| DNA helicase II [Escherichia coli B7A]
          Length = 720

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|216673|dbj|BAA00048.1| uvrD [Escherichia coli]
 gi|355936|prf||1207236A helicase II
          Length = 720

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|222150842|ref|YP_002559995.1| hypothetical protein MCCL_0592 [Macrococcus caseolyticus JCSC5402]
 gi|222119964|dbj|BAH17299.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 1148

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 32/221 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +  T S+Q       +   V+A AGSGKT +LV+R++R ++    +   LL +T T A+A
Sbjct: 1   MQWTASQQEAIVTTGQDTLVAAAAGSGKTAVLVERIIRKIIDQSVNVDELLVVTFTNASA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM HR+   +                      P+   +      L           + T
Sbjct: 61  KEMKHRIFNRLQEA---------------LNDAPHNEHLKTQLIKLHQA-------DIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H FC  ++++F    ++   F  A EE+   L+ +A    L +I    + +       +
Sbjct: 99  LHRFCLNLIERFYYTIDLDPTFRTASEEERALLLMQAIDDVLETIYEAAHPDDMTLLLHL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                D+ +   +         +KL  F  +     + +E 
Sbjct: 159 SSDRKDDYVRKTL---------VKLYNFAIANSHPSRWLEA 190


>gi|213622282|ref|ZP_03375065.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 495

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|218701273|ref|YP_002408902.1| DNA-dependent helicase II [Escherichia coli IAI39]
 gi|218371259|emb|CAR19093.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI39]
          Length = 720

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300072981|gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1158

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 7/214 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           +++ + E +D    T      A DP  S  V A AGSGKT +LV R+LRLLLA A    L
Sbjct: 10  AYEVNGEAVDAAVFT----RAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPEL 65

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN-KSDMSKARHLLITI 124
           L +T T+ AA EM  R+LE++   +   +   +A + +    +P+    +  AR L   I
Sbjct: 66  LAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERI 125

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           L +   L + T H++   ++Q  PL + +   + +   E++ +L++EA +  + ++    
Sbjct: 126 LSSEQSLSIDTFHSWFARLLQIAPLASGVPYGYTLT--EKNGELLDEAYRRFMQTLREPE 183

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
              +K A  E+ E++ D +   L+   I  R   
Sbjct: 184 GAHIKAALLELYELAGDFNARQLLDAFIDKRAEW 217


>gi|330432051|gb|AEC17110.1| DNA-dependent helicase II [Gallibacterium anatis UMN179]
          Length = 721

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 38/168 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D +++ + E + A  P  +  V A AGSGKT +L  R+  L+ + N  P+ +L 
Sbjct: 2   DFSELLDGLNERQREAVAA--PLGNYLVLAGAGSGKTRVLTYRIAWLIGVENVSPNGILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +                                   LL   +  
Sbjct: 60  VTFTNKAAAEMRHRIED-----------------------------------LLQDQITP 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           P G+ V T H+    ++++   +A + + F I D E   +L++   KS
Sbjct: 85  PFGMWVGTFHSLAHRLLRRHAPDAGLPADFQILDSEDQLRLVKRLVKS 132


>gi|168763938|ref|ZP_02788945.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501]
 gi|217325077|ref|ZP_03441161.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588]
 gi|189365967|gb|EDU84383.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501]
 gi|217321298|gb|EEC29722.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588]
          Length = 720

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|325686249|gb|EGD28292.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 1227

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 26/222 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +  T  +        +   VSA+AGSGKT +LV+RV+R ++  +   + LL +T T+AAA
Sbjct: 3   VKYTPDQARAIESRGQDILVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + +        +   A+                    L   L       + T
Sbjct: 63  SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    +I   F+I  +    +L++E A +      + + ++  K  F  
Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + +    +       D++     L L  F  +    R  ++K
Sbjct: 164 LYDAFAGDSNANSARDLL-----LDLYQFAMARPNYRAWLQK 200


>gi|104774001|ref|YP_618981.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|123251916|sp|Q1GAA9|ADDA_LACDA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|103423082|emb|CAI97803.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1227

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 26/222 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +  T  +        +   VSA+AGSGKT +LV+RV+R ++  +   + LL +T T+AAA
Sbjct: 3   VKYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + +        +   A+                    L   L       + T
Sbjct: 63  SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    +I   F+I  +    +L++E A +      + + ++  K  F  
Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + +    +       D++     L L  F  +    R  ++K
Sbjct: 164 LYDAFAGDSNANSARDLL-----LDLYQFAMARPNYRAWLQK 200


>gi|88703287|ref|ZP_01101003.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71]
 gi|88702001|gb|EAQ99104.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71]
          Length = 1107

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 7/205 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               +L A DP  S  VSA AGSGKT +LVQR L LL   + P +++ +T T+ AAAEM 
Sbjct: 5   DNEARLRAVDPGLSVCVSAPAGSGKTALLVQRFLGLLARVSEPESVVAITFTRKAAAEMR 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV+  +   +         E   +   +               +L+ P  L++QTI +F
Sbjct: 65  ARVVGALQGAAEGVKARNPHEEALMAAARAVAEH---DGSRGWGLLDNPSRLRIQTIDSF 121

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE-ILEI 198
           C  + +Q P+ +         D   S+ L  EA ++ L   +    ++  +     +L +
Sbjct: 122 CGYLTRQMPVLSGCGGQVTATD--DSRVLYREAIENFLHGELNRRQDDKARDIETLLLHL 179

Query: 199 SNDEDIE-TLISDIISNRTALKLIF 222
            N+ D    L+S ++  R   + +F
Sbjct: 180 DNNWDSALELLSKLLQRREQWQPVF 204


>gi|269798726|ref|YP_003312626.1| recombination helicase AddA [Veillonella parvula DSM 2008]
 gi|269095355|gb|ACZ25346.1| recombination helicase AddA [Veillonella parvula DSM 2008]
          Length = 1288

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 37/232 (15%)

Query: 16  LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66
            +  T  ++     P  S        V+A AGSGKT +LV+R++  L    +P     L+
Sbjct: 2   GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMDNPLSVQELM 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T TKAAA EMS R+   +      +++    E             + +  +LL +   
Sbjct: 62  VVTFTKAAAQEMSARIGLALAKAMESTEDAAMQE------------RLERQLNLLPSA-- 107

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T+H+FC+ +++ +  + +I     I +E +   L +E     LA ++  + E
Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           E     YE+ +  +D+  +  ++  I     + L  +  S       + K+L
Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205


>gi|126030797|pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
 gi|126030798|pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
 gi|126030803|pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
 gi|126030804|pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
 gi|126030807|pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 gi|126030808|pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 gi|126030811|pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
 gi|126030812|pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
          Length = 680

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|116514017|ref|YP_812923.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275213|sp|Q04AN7|ADDA_LACDB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116093332|gb|ABJ58485.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1227

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 26/222 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +  T  +        +   VSA+AGSGKT +LV+RV+R ++  +   + LL +T T+AAA
Sbjct: 3   VKYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + +        +   A+                    L   L       + T
Sbjct: 63  SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194
           I +FC  ++++F    +I   F+I  +    +L++E A +      + + ++  K  F  
Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           + +    +       D++       L  F  +    R  ++K
Sbjct: 164 LYDAFAGDSNANSARDLL-----FDLYQFAMARPNYRAWLQK 200


>gi|314933179|ref|ZP_07840544.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87]
 gi|313653329|gb|EFS17086.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87]
          Length = 1218

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 32/219 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
            T ++        +   V+A AGSGKT +LV+R++ R+L  N     LL +T T  +A E
Sbjct: 11  WTDAQWRSIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDNMDVDLLLVVTFTNLSARE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV + I   S                 +P+   +   R  +          ++ T+H
Sbjct: 71  MKLRVDQRIQEASL---------------AEPDNEHLKNQRVKIHQA-------QISTLH 108

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++Q      +I  +F  + E ++  L+++     L       + +  +   ++  
Sbjct: 109 SFCLKLIQLHYDVLDIDPNFRTSSEAENVLLLDQTIDDVLERHYDILDSDFIELTEQLSS 168

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ND+    +I          +L FF  +     K +++
Sbjct: 169 DRNDDQFRNIIK---------RLYFFSIANPNPFKWLDQ 198


>gi|152972801|ref|YP_001337947.1| DNA-dependent helicase II [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|329997488|ref|ZP_08302790.1| DNA helicase II [Klebsiella sp. MS 92-3]
 gi|150957650|gb|ABR79680.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328539056|gb|EGF65095.1| DNA helicase II [Klebsiella sp. MS 92-3]
          Length = 720

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + AS    +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        T
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|255523282|ref|ZP_05390252.1| recombination helicase AddA [Clostridium carboxidivorans P7]
 gi|255512936|gb|EET89206.1| recombination helicase AddA [Clostridium carboxidivorans P7]
          Length = 1226

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 41/229 (17%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75
            T+ ++        +  V+A AG+GKT +LV+R+++ +  N        LL +T T AAA
Sbjct: 5   WTQEQREAIFTKNCNLLVAAGAGAGKTAVLVERIIQKITDNEDDVDVDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K     P   ++ K   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KKLEVMPESKNLQKQLMLL-------NKSNIMT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++      ++  +F + DE +S  L +E    T+  +  D  E+  + F ++
Sbjct: 103 IHSFCLQVIKNNFHIIDLDPNFRVCDETESILLKQE----TIDEVFEDKYEQSDEGFIQL 158

Query: 196 LE---ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           ++     ND  +E +I D         L  F  S  W  K I   +   
Sbjct: 159 VKCYGGKNDFKVENMILD---------LYEFAKSNPWPEKWISTMVERF 198


>gi|320178104|gb|EFW53084.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella boydii ATCC 9905]
          Length = 720

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ ++++                                       +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMST--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|312872979|ref|ZP_07733039.1| ATP-dependent helicase/nuclease subunit A family protein
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091501|gb|EFQ49885.1| ATP-dependent helicase/nuclease subunit A family protein
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 201

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIIS 213
              + D ++E   S ++ 
Sbjct: 158 -NFAGDREVEAARSMLLE 174


>gi|209921291|ref|YP_002295375.1| DNA-dependent helicase II [Escherichia coli SE11]
 gi|209914550|dbj|BAG79624.1| DNA helicase II [Escherichia coli SE11]
 gi|324016210|gb|EGB85429.1| DNA helicase II [Escherichia coli MS 117-3]
          Length = 720

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKTMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|296188218|ref|ZP_06856610.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7]
 gi|296047344|gb|EFG86786.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7]
          Length = 1243

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 41/229 (17%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75
            T+ ++        +  V+A AG+GKT +LV+R+++ +  N        LL +T T AAA
Sbjct: 5   WTQEQREAIFTKNCNLLVAAGAGAGKTAVLVERIIQKITDNEDDVDVDKLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I+               K     P   ++ K   LL           + T
Sbjct: 65  SEMRERIGDAIS---------------KKLEVMPESKNLQKQLMLL-------NKSNIMT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++      ++  +F + DE +S  L +E    T+  +  D  E+  + F ++
Sbjct: 103 IHSFCLQVIKNNFHIIDLDPNFRVCDETESILLKQE----TIDEVFEDKYEQSDEGFIQL 158

Query: 196 LE---ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           ++     ND  +E +I D         L  F  S  W  K I   +   
Sbjct: 159 VKCYGGKNDFKVENMILD---------LYEFAKSNPWPEKWISTMVERF 198


>gi|282849710|ref|ZP_06259094.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745]
 gi|282580647|gb|EFB86046.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745]
          Length = 1251

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 37/232 (15%)

Query: 16  LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66
            +  T  ++     P  S        V+A AGSGKT +LV+R++  L    +P     L+
Sbjct: 2   GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMDNPLSVQELM 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T TKAAA EMS R+   +      +D+               ++ + +  +LL +   
Sbjct: 62  VVTFTKAAAQEMSARIGLALAKAMESTDDA------------ALQARLERQLNLLPSA-- 107

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T+H+FC+ +++ +  + +I     I +E +   L +E     LA ++  + E
Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           E     YE+ +  +D+  +  ++  I     + L  +  S       + K+L
Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205


>gi|329920263|ref|ZP_08277047.1| hypothetical protein HMPREF9210_0804 [Lactobacillus iners SPIN
           1401G]
 gi|328936308|gb|EGG32756.1| hypothetical protein HMPREF9210_0804 [Lactobacillus iners SPIN
           1401G]
          Length = 201

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 30/219 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++F    N+  +F+I  ++    L++E           +N ++    FY  
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
              + D ++E   S +      L+L +   +       +
Sbjct: 158 -NFAGDREVEAARSML------LELYYVTLAQPNYEAFL 189


>gi|303231758|ref|ZP_07318481.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513707|gb|EFL55726.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1273

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 37/232 (15%)

Query: 16  LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66
            +  T  ++     P  S        V+A AGSGKT +LV+R++  L    +P     L+
Sbjct: 2   GVKWTPEQESAIMSPKDSNLGAQTLLVAAAAGSGKTAVLVERIITRLKDMENPLSVQELM 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T TKAAAAEMS R+   +      +D+            K  ++ + +  +LL +   
Sbjct: 62  VVTFTKAAAAEMSARIGVALAKAMESTDD------------KALQARLERQLNLLPSA-- 107

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T+H+FC+ +++ +  + +I     I +E +   L +E     L +++ +  E
Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDIPPTARIGNEAEMALLKQE----VLENLLKEAYE 158

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                 +++ +  +D+  +  + D       L L  F  S       +  ++
Sbjct: 159 HNMYGIFDLSDFFSDDKSDAGLQD-----KVLSLYEFAMSQSNSDGWMRHAV 205


>gi|218692089|ref|YP_002400301.1| DNA-dependent helicase II [Escherichia coli ED1a]
 gi|218429653|emb|CAR10617.2| DNA-dependent ATPase I and helicase II [Escherichia coli ED1a]
          Length = 720

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDTEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|294794377|ref|ZP_06759513.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44]
 gi|294454707|gb|EFG23080.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44]
          Length = 1251

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 37/232 (15%)

Query: 16  LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66
            +  T  ++     P  S        V+A AGSGKT +LV+R++  L    +P     L+
Sbjct: 2   GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMDNPLSVQELM 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T TKAAA EMS R+   +      +D+               ++ + +  +LL +   
Sbjct: 62  VVTFTKAAAQEMSARIGLALAKAMESTDDA------------ALQARLERQLNLLPSA-- 107

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T+H+FC+ +++ +  + +I     I +E +   L +E     LA ++  + E
Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           E     YE+ +  +D+  +  ++  I     + L  +  S       + K+L
Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205


>gi|259046745|ref|ZP_05737146.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens
           ATCC 49175]
 gi|259036641|gb|EEW37896.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens
           ATCC 49175]
          Length = 1231

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 30/220 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            +  T  +    +    +  VSA+AGSGKT +LV+R+L  +      + LL +T T+ AA
Sbjct: 8   GLQATPDQWKAIATRGNNLLVSASAGSGKTKVLVERILMHIQEGIDINELLVVTFTELAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +                    +   KS     +      L+      + T
Sbjct: 68  KEMKERLRSKL-------------------EEAIEKSTDEVLQQRFAKQLQLIPSAMIST 108

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++++   A I   F + DE + + L E+  ++      L    E ++ F   
Sbjct: 109 IHSFCMKVIRRYFYLAGIDPVFTMMDEIEGQLLQEKVWRA--LEEELLEQPEYEEVFATF 166

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
               +D+ I           T  +L  +  S    +  + 
Sbjct: 167 SSDRSDDGITN---------TVYRLYQYSRSKREPKTWLS 197


>gi|157144441|ref|YP_001451760.1| DNA-dependent helicase II [Citrobacter koseri ATCC BAA-895]
 gi|157081646|gb|ABV11324.1| hypothetical protein CKO_00155 [Citrobacter koseri ATCC BAA-895]
          Length = 720

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLESLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        T
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|262040875|ref|ZP_06014101.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041764|gb|EEW42809.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 720

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + AS    +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        T
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   L+AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINNQKDEGLR 155


>gi|289829109|ref|ZP_06546783.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 539

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|160895394|ref|ZP_02076164.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50]
 gi|156862965|gb|EDO56396.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50]
          Length = 1247

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 41/232 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----------ANAHPSTL 65
            IS T  ++ + +    +  VSA AGSGKT +LV+R+L +++                 +
Sbjct: 2   GISWTDEQKSVINSRHGNLLVSAAAGSGKTAVLVERILEMVMGVDADGNKAEEKIDIDEV 61

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T+AAAA+M  ++ + +   +                  P    + K   LL    
Sbjct: 62  LVVTFTRAAAAQMKEKIADKLEQAAE---------------DHPEDEHIVKQLSLLPRA- 105

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                  + TI +FC  I++ +     I S F IAD  +   +  +     L     + +
Sbjct: 106 ------DIMTIDSFCLGIVKDYFQMIGIDSSFDIADNAEMDLIKNDILDEVLEQKYQEAS 159

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           +E            +DE I  L+  I    +          Y    + I ++
Sbjct: 160 DEFIGLVDSFARKESDEKIRELVYQIYRVASG---------YPKPERWINEA 202


>gi|213021539|ref|ZP_03335986.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 567

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|294792591|ref|ZP_06757738.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27]
 gi|294456490|gb|EFG24853.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27]
          Length = 1251

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 37/232 (15%)

Query: 16  LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66
            +  T  ++     P  S        V+A AGSGKT +LV+R++  L    +P     L+
Sbjct: 2   GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMYNPLSVQELM 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T TKAAA EMS R+   +      +D++              ++ + +  +LL +   
Sbjct: 62  VVTFTKAAAQEMSARIGLALAKAMESTDDV------------ALQTRLERQLNLLPSA-- 107

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T+H+FC+ +++ +  + +I     I +E +   L +E     LA ++  + E
Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           E     YE+ +  +D+  +  ++  I     + L  +  S       + K+L
Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205


>gi|116494973|ref|YP_806707.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           casei ATCC 334]
 gi|122263609|sp|Q038V7|ADDA_LACC3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116105123|gb|ABJ70265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus casei
           ATCC 334]
          Length = 1234

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 26/234 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +   T S+Q   +       VSA+AGSGKT +LV+R+++ +L  +A  + +L +T T+AA
Sbjct: 1   MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            AEM  ++   +          LS E                 R  L   +      K+ 
Sbjct: 61  TAEMRTKIQTALKKALTERRHELSGE----------------DRRHLANQIAMVNAAKIS 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192
           T+ AF   I+Q +    ++   F +  +E  + +++E     L   +  ++E    ++  
Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLT 164

Query: 193 YEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLW-RRKI---IEKSLW 239
                  +D  ++ L+ ++I    A    K      +  +   K      + +W
Sbjct: 165 ANFSGDRDDSGLQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIW 218


>gi|239631427|ref|ZP_04674458.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525892|gb|EEQ64893.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 1234

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 26/234 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +   T S+Q   +       VSA+AGSGKT +LV+R+++ +L  +A  + +L +T T+AA
Sbjct: 1   MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            AEM  ++   +          LS E                 R  L   +      K+ 
Sbjct: 61  TAEMRTKIQTALKKALTERRHELSGE----------------DRRHLANQIAMVNAAKIS 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192
           T+ AF   I+Q +    ++   F +  +E  + +++E     L   +  ++E    ++  
Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLT 164

Query: 193 YEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLW-RRKI---IEKSLW 239
                  +D  ++ L+ ++I    A    K      +  +   K      + +W
Sbjct: 165 ANFSGDRDDSGLQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIW 218


>gi|82546164|ref|YP_410111.1| DNA-dependent helicase II [Shigella boydii Sb227]
 gi|81247575|gb|ABB68283.1| DNA-dependent ATPase I and helicase II [Shigella boydii Sb227]
 gi|320185474|gb|EFW60243.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella flexneri CDC 796-83]
 gi|332089046|gb|EGI94157.1| DNA helicase II [Shigella boydii 3594-74]
          Length = 720

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCLPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|227535023|ref|ZP_03965072.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|301066540|ref|YP_003788563.1| ATP-dependent exoDNAse [Lactobacillus casei str. Zhang]
 gi|227187338|gb|EEI67405.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|300438947|gb|ADK18713.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           casei str. Zhang]
          Length = 1234

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 26/234 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +   T S+Q   +       VSA+AGSGKT +LV+R+++ +L  +A  + +L +T T+AA
Sbjct: 1   MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            AEM  ++   +          LS E                 R  L   +      K+ 
Sbjct: 61  TAEMRTKIQTALKKALTERRHELSGE----------------DRRHLANQIAMVNAAKIS 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192
           T+ AF   I+Q +    ++   F +  +E  + +++E     L   +  ++E    ++  
Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLT 164

Query: 193 YEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLW-RRKI---IEKSLW 239
                  +D  ++ L+ ++I    A    K      +  +   K      + +W
Sbjct: 165 ANFSGDRDDSGLQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIW 218


>gi|284048669|ref|YP_003399008.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731]
 gi|283952890|gb|ADB47693.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731]
          Length = 1116

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 24/200 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + S T  +Q   S   R+  VSA AGSGKT +LV+R L++L    A    +L +T T+ A
Sbjct: 1   MASFTPQQQEAISTLDRNVSVSAGAGSGKTRVLVERFLKILQERKATAQEILAITFTRKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I      + E                      +      L+      + 
Sbjct: 61  AREMRERVQKGILDRLGAAAEPEE-------------------KAYWQEQLQLADRAPIT 101

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TI +FC  ++++ P+EA +  +FA+ +E Q +   EE  ++ +   +   + +L      
Sbjct: 102 TIDSFCSQVLRENPVEAGLDPNFAVKEEYQIRAFREETAQAFVQKEIQQQDGDLAA---- 157

Query: 195 ILEISNDEDIETLISDIISN 214
           +L++   + +  ++  +I +
Sbjct: 158 LLDLYPADRLARILVALIDD 177


>gi|191638484|ref|YP_001987650.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23]
 gi|251764527|sp|B3WEJ1|ADDA_LACCB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|190712786|emb|CAQ66792.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23]
 gi|327382519|gb|AEA53995.1| ATP-dependent nuclease subunit A [Lactobacillus casei LC2W]
 gi|327385716|gb|AEA57190.1| ATP-dependent nuclease subunit A [Lactobacillus casei BD-II]
          Length = 1234

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 26/234 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +   T S+Q   +       VSA+AGSGKT +LV+R+++ +L  +A  + +L +T T+AA
Sbjct: 1   MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            AEM  ++   +          LS E                 R  L   +      K+ 
Sbjct: 61  TAEMRTKIQTALKKALTERRHELSGE----------------DRRHLANQIAMVNAAKIS 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192
           T+ AF   I+Q +    ++   F +  +E  + +++E     L   +  ++E    ++  
Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLT 164

Query: 193 YEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLW-RRKI---IEKSLW 239
                  +D  ++ L+ ++I    A    K      +  +   K      + +W
Sbjct: 165 ANFSGDRDDSGLQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIW 218


>gi|170769888|ref|ZP_02904341.1| DNA helicase II [Escherichia albertii TW07627]
 gi|170121326|gb|EDS90257.1| DNA helicase II [Escherichia albertii TW07627]
          Length = 720

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNILVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F + D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQLLDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|327441306|dbj|BAK17671.1| ATP-dependent exoDNAse beta subunit [Solibacillus silvestris
           StLB046]
          Length = 1239

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTK 72
           +  T  +            VSA AGSGKT +L++R+++ +L           LL +T T 
Sbjct: 10  VQWTDVQWKAIYASGHDILVSAAAGSGKTAVLIERLIQKMLAPEDKRIDVDELLVVTFTN 69

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A+AAEM +R+ E +                K   + PN   + +   LL          +
Sbjct: 70  ASAAEMRNRMAEAL---------------EKELAQNPNNQFLRRQLSLL-------NKAQ 107

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN------NE 186
           + T+H+FC +I +++    ++   F +A  E++  L ++     L      +       E
Sbjct: 108 ISTLHSFCLSICREYAYTIDLDPGFRLASTEEASLLQDDVLMDVLEKAYRGDMEALFTKE 167

Query: 187 ELKKAFYEILEISNDEDIETLISDIIS 213
           EL           +D+ IE L+ ++  
Sbjct: 168 ELYTLIDSFASDRSDQAIELLLQEMYK 194


>gi|315924912|ref|ZP_07921129.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621811|gb|EFV01775.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 1178

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 24/200 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75
           +  T  ++   S   ++  VSA AGSGKT +L++R+ RL++       +LL LT T+AAA
Sbjct: 1   MQWTTEQEAAISSRHQNLLVSAAAGSGKTALLIERIRRLVVDEDVDVDSLLVLTFTRAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   ++       +                   +  R  L   L    G  ++T
Sbjct: 61  GEMRERLSTALSEALMACTD-------------------ADKRRRLSNQLRRLSGASIET 101

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFC  ++++F  E +   +  I D+ +  +L +EA  +      L+  E+ + AF ++
Sbjct: 102 IHAFCGDLVREFFQEVDADPNDRIGDDVELDRLQDEAMTAVFEERYLEIPEDGETAFSKL 161

Query: 196 LEIS----NDEDIETLISDI 211
           ++       DED+ TL+ D+
Sbjct: 162 VDAYGDSKGDEDLRTLVLDL 181


>gi|307243582|ref|ZP_07525727.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM
           17678]
 gi|306493023|gb|EFM65031.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM
           17678]
          Length = 1310

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            TK +  +      +  V+A AGSGKT +L++R++ L+     P     LL +T TKAAA
Sbjct: 5   WTKEQTSVIDHRGSNLLVAAAAGSGKTAVLIERIISLVTDKEKPIDIDKLLVVTFTKAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   +        E    +   +   + +                      + T
Sbjct: 65  NEMRERVGLALEDALDKDPENDHLQRQLLLLNRAD----------------------ITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  ++++     ++  +    D  + + + ++  +     +  + NEE    F  +
Sbjct: 103 IDSFCGRVVRENFHATDLDPNVRTGDPAEIEMIKKDVIEDLFEDLYNEKNEE----FLSL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           ++I +  + +  + D+I     L L  F  S  +    ++ +    
Sbjct: 159 VDIYSARNNDRPLMDLI-----LMLNTFIDSSAYPEDWLDDNAEKF 199


>gi|313894359|ref|ZP_07827924.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441183|gb|EFR59610.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 1304

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 37/232 (15%)

Query: 16  LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66
            +  T  ++     P  S        V+A AGSGKT +LV+R++  L    +P     L+
Sbjct: 2   GVKWTPEQESAIIAPKDSSLANQTLLVAAAAGSGKTAVLVERIITRLKDIDNPLSVQELM 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T TKAAA EMS R+   +      +++    E             + +  +LL +   
Sbjct: 62  VVTFTKAAAQEMSARIGLALAKAMESTEDAAMQE------------RLERQLNLLPSA-- 107

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T+H+FC+ +++ +  + +I     I +E +   L +E     LA +++ + E
Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLIKSYE 158

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           E     YE+ +  +D+  +  ++  I     + L  +  S       + K+L
Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MLLYNYAMSLANPDGWLRKAL 205


>gi|321159776|pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
          Length = 647

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|218560877|ref|YP_002393790.1| DNA-dependent helicase II [Escherichia coli S88]
 gi|218367646|emb|CAR05431.1| DNA-dependent ATPase I and helicase II [Escherichia coli S88]
          Length = 720

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMT 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|37528453|ref|NP_931798.1| DNA-dependent helicase II [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787891|emb|CAE17008.1| DNA helicase II [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 720

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ 
Sbjct: 2   DVSYLLESLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVEKASPFSVMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIENLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+AN+   F I D E   +L+    K  + ++ LD+ + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQNRLL----KRIIKAMNLDDKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQGMWYINGKKDEGLR 155


>gi|154498367|ref|ZP_02036745.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC
           29799]
 gi|150272678|gb|EDM99856.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC
           29799]
          Length = 1206

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 34/221 (15%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T+ +  + ++   +  VSA AGSGKT +LV+R+L  +          L +T+TKAAAAE+
Sbjct: 6   TEQQAAVVNNRGGALLVSAAAGSGKTRVLVERLLGRVEHEGLDIDRFLVITYTKAAAAEL 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++E               E+++   + P    + + + L+          ++ T+H+
Sbjct: 66  RSRIVE---------------ELSQRLARNPTDRHLRRQQTLVYKA-------QISTVHS 103

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--NNEELKKAFYEIL 196
           FC  ++++     ++   F + DE ++  L+  A    +     D   + +  K    + 
Sbjct: 104 FCAQLLRECGHMLDVNPDFRLCDEGEAGVLMLRALDEVMDRRYEDITPDSDFAKLVDTMS 163

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
              +D  +  ++ DI              S+      +++ 
Sbjct: 164 AGRDDSRLMQIVLDIRGR---------VQSHPDPAAWLDQQ 195


>gi|317011772|gb|ADU85519.1| putative recombination protein RecB [Helicobacter pylori
           SouthAfrica7]
          Length = 949

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K ++        A+ +    L     +K+ TI AF ++I+
Sbjct: 65  KENSENEKEKSQNILKELEEKYNLNPSLVQDNAKKIYQRFLN--AEIKISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           ++F     ++++F + ++ ++    ++  +S L+++  +  EEL     + L  SN    
Sbjct: 123 RKFCWFVGLSANFEVNEDTEAH--QQQLNESFLSALNSEQLEELSVFIAQCLS-SNSYGS 179

Query: 205 ETLISDIISNRTALKLIFFFFSYL 228
           ++++  +   +  L L  F    L
Sbjct: 180 DSVLEQLHFLKNKLYLFDFNQQEL 203


>gi|332084670|gb|EGI89858.1| DNA helicase II [Shigella boydii 5216-82]
          Length = 720

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  ++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGLLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|304410803|ref|ZP_07392420.1| DNA helicase II [Shewanella baltica OS183]
 gi|307305026|ref|ZP_07584776.1| DNA helicase II [Shewanella baltica BA175]
 gi|304350700|gb|EFM15101.1| DNA helicase II [Shewanella baltica OS183]
 gi|306912428|gb|EFN42852.1| DNA helicase II [Shewanella baltica BA175]
          Length = 722

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|319427815|gb|ADV55889.1| DNA helicase II [Shewanella putrefaciens 200]
          Length = 722

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIETLISDIIS---NRTALKLIFFFFSYLWRRKIIE 235
             +     +    D+ +     D I     +  LK+   +     R  +++
Sbjct: 138 PPRQAQGYINGKKDQGLRPKHIDAIGFPIEQNLLKIYQVYQESCDRAGLVD 188


>gi|331702530|ref|YP_004399489.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129873|gb|AEB74426.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri
           NRRL B-30929]
          Length = 1252

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 92/217 (42%), Gaps = 29/217 (13%)

Query: 20  TKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
           T  +     D P  +  VSA+AGSGKT +LV R++ ++   +     LL +T T AAA E
Sbjct: 6   TPDQLKAIKDRPAGNVLVSASAGSGKTRVLVDRIIDMVKNQHVDIDQLLVVTFTNAAAKE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   +    + + E                      +  L+T ++      + T+ 
Sbjct: 66  MRQRLQAALREEFNQAAEAE--------------------KGRLLTQIQKVAVADITTMD 105

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A+C+ ++ ++     I  +F I  ++  K+L+++     +   +  N+E+   +F  + E
Sbjct: 106 AYCQKLVGRYYYLLGIDPNFRILADDTEKQLLKDQVWGAVREDLYGNDEDG--SFARLTE 163

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +++  +  ++D+I      +L  F          +
Sbjct: 164 NFSNDRSDDGLADLI-----YRLDEFANVTDDPDGWL 195


>gi|241895871|ref|ZP_04783167.1| ATP-dependent deoxyribonuclease, subunit A [Weissella
           paramesenteroides ATCC 33313]
 gi|241870914|gb|EER74665.1| ATP-dependent deoxyribonuclease, subunit A [Weissella
           paramesenteroides ATCC 33313]
          Length = 1269

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 28/220 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T S+        R+  VSA+AGSGKT +LV+RV++ LLA  + +  L +T T+AAA+
Sbjct: 1   MKFTDSQSAAIKTKGRNVLVSASAGSGKTRVLVERVMQRLLAGENVNEFLIVTFTEAAAS 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+           +  + +E+    G+          R  L+  L       + T+
Sbjct: 61  EMKERL-----------EGAIRSELIASVGE---------QRQHLLKQLRLLNIANISTL 100

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI- 195
           HAF   +++Q+    ++   F + D+ +   ++ E   + L     ++NE+   AF    
Sbjct: 101 HAFALRLIEQYHYTIDLDPQFRLMDDAERTLVMLEVYNTLLEEQYANDNEQ--HAFATFA 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            + +     +  + +         L  F  +       ++
Sbjct: 159 AQFTTSTTDDRALQEAT-----FSLYDFATARPDAVNWLD 193


>gi|167462209|ref|ZP_02327298.1| ATP-dependent deoxyribonuclease (subunit A) [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 1391

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 98/222 (44%), Gaps = 32/222 (14%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74
           + T  +    +   ++  ++A AGSGKT +LV+R++R +     P     LL  T TKAA
Sbjct: 26  TWTDDQWNAITGKGKNMLIAAAAGSGKTAVLVERIIRRISDEREPVDVDRLLVATFTKAA 85

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R+ E +                K   K+P    + +   L+       G   + 
Sbjct: 86  ASEMKERIREAL---------------EKELLKRPQSPHLRRQLALM-------GRANIT 123

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+FC  ++++     ++   F I+ E +++ + ++  +  +     ++ E+    F++
Sbjct: 124 TLHSFCLDVIRRHFASIHLDPVFRISGETETELMRQDVLEELMEEYYENSAED--SPFWK 181

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +++    E  ++ +  ++      KL     S+ W    +++
Sbjct: 182 LVDSFGGEHSDSGLVRLVQ-----KLYDESRSHPWPDYWLKE 218


>gi|120597399|ref|YP_961973.1| DNA-dependent helicase II [Shewanella sp. W3-18-1]
 gi|146294460|ref|YP_001184884.1| DNA-dependent helicase II [Shewanella putrefaciens CN-32]
 gi|120557492|gb|ABM23419.1| ATP-dependent DNA helicase UvrD [Shewanella sp. W3-18-1]
 gi|145566150|gb|ABP77085.1| ATP-dependent DNA helicase UvrD [Shewanella putrefaciens CN-32]
          Length = 722

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIETLISDIIS---NRTALKLIFFFFSYLWRRKIIE 235
             +     +    D+ +     D I     +  LK+   +     R  +++
Sbjct: 138 PPRQAQGYINGKKDQGLRPKHIDAIGFPIEQNLLKIYQVYQESCDRAGLVD 188


>gi|227431965|ref|ZP_03913985.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352250|gb|EEJ42456.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 1230

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 27/219 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            TK++Q    +   +  V+A+AGSGKT +L++R+++ +L+       L +T T AAA EM
Sbjct: 5   FTKNQQRAIEEKGHNILVAASAGSGKTTVLIERLIQKILSGVSVEKFLIVTFTNAAAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   I     ++DE                      +  L   L       + TI A
Sbjct: 65  RERLEVAIEKRLKVADES--------------------QKRFLQEQLLILPAANISTIDA 104

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +   I++ +     +   F +  D  + K L ++     LA    +NN   ++    +  
Sbjct: 105 YALRIIEIYYHVIGLDPQFRLLSDTAERKLLQQDVLADVLADFYDENNIHHEQFLTLVNN 164

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             N    + L       +  LKL  F  +     + +EK
Sbjct: 165 FGNPNQDDQL------QKIILKLSDFAEARADGNEWLEK 197


>gi|126172693|ref|YP_001048842.1| DNA-dependent helicase II [Shewanella baltica OS155]
 gi|217974967|ref|YP_002359718.1| DNA-dependent helicase II [Shewanella baltica OS223]
 gi|125995898|gb|ABN59973.1| ATP-dependent DNA helicase UvrD [Shewanella baltica OS155]
 gi|217500102|gb|ACK48295.1| DNA helicase II [Shewanella baltica OS223]
          Length = 722

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|160877119|ref|YP_001556435.1| DNA-dependent helicase II [Shewanella baltica OS195]
 gi|160862641|gb|ABX51175.1| DNA helicase II [Shewanella baltica OS195]
 gi|315269321|gb|ADT96174.1| DNA helicase II [Shewanella baltica OS678]
          Length = 722

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|153002398|ref|YP_001368079.1| DNA-dependent helicase II [Shewanella baltica OS185]
 gi|151367016|gb|ABS10016.1| DNA helicase II [Shewanella baltica OS185]
          Length = 722

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|85060320|ref|YP_456022.1| DNA-dependent helicase II [Sodalis glossinidius str. 'morsitans']
 gi|84780840|dbj|BAE75617.1| DNA helicase II [Sodalis glossinidius str. 'morsitans']
          Length = 720

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ ++ ++  + E ++A  P  +  V A AGSGKT +LV R+  LL + N  P +++ 
Sbjct: 2   DVSDLLNSLNDKQREAVVA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSVMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  ++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEHLVGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++    +AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHQDANLPQDFQILDSEDQLRLL----KRLIRAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAMWYIGGKKDDGLR 155


>gi|199598402|ref|ZP_03211821.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           rhamnosus HN001]
 gi|258508491|ref|YP_003171242.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus GG]
 gi|199590721|gb|EDY98808.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
           rhamnosus HN001]
 gi|257148418|emb|CAR87391.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus GG]
 gi|259649801|dbj|BAI41963.1| ATP-dependent exonuclease subunit A [Lactobacillus rhamnosus GG]
          Length = 1236

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 19/202 (9%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +   T S+Q   +       VSA+AGSGKT +LV+R+++ +L  +A  + +L +T T+AA
Sbjct: 1   MTQFTPSQQAAINHHGHDMLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            +EM  ++   +          L+AE                 R  L   +      K+ 
Sbjct: 61  TSEMRTKIQTALKQTLTAKRHELNAE----------------DRRHLANQIAMVNAAKIS 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192
           T+ AF   I+Q +    ++   F +  +E  + +++E   + L       +E  E ++  
Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQEQVWNDLREQFYAGDEAAEFEQLT 164

Query: 193 YEILEISNDEDIETLISDIISN 214
                  +D  ++ L+ +++  
Sbjct: 165 ANFSGDRDDSGLQDLMFELMRQ 186


>gi|317405925|gb|EFV86204.1| nuclease/helicase [Achromobacter xylosoxidans C54]
          Length = 1190

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 13/210 (6%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           DP RS  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  RVL  +  
Sbjct: 19  DPARSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVLSKLRR 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E       + +     ++ +++       +L+ P  L ++TI +FC  +++  P
Sbjct: 79  GLDAPPEA----AHERRSWDLARAALARNDAQQWHLLDHPARLAIRTIDSFCAGLVRSMP 134

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
             + +     I D   ++   E A ++TL   + D+ + ++     +    + +  +  I
Sbjct: 135 WLSELGGMPEITD--DARAHYEAAARATLD--LADDYDAVRILLQHM--DVDVQAAKDAI 188

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +D++  R     +    S    R+ +E++L
Sbjct: 189 ADMLGQRDQWLPLLRHGSD---REALEETL 215


>gi|221134097|ref|ZP_03560402.1| DNA helicase II [Glaciecola sp. HTCC2999]
          Length = 722

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 45/220 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A  P +   + A AGSGKT +LV R+  L+ + N  P ++L 
Sbjct: 2   DVSRLLDGLNDKQRQAVAA--PAQDMLILAGAGSGKTRVLVHRIAWLMEVENLSPFSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ ++                                        ++
Sbjct: 60  VTFTNKAAREMRGRIEQLKG--------------------------------------QS 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + + T H     +++    EAN+  +F I D +   +LI+   KS      LD  + 
Sbjct: 82  LHHMWIGTFHGLAHRLLRAHYAEANLPENFTILDSDDQHRLIKRIIKSM----NLDEKDW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +  + DE +     D   +    K+   + +Y
Sbjct: 138 PAKQSQWYINGNKDEGLRPKDIDTYGDANQQKMRDIYQAY 177


>gi|310826445|ref|YP_003958802.1| recombination helicase AddA [Eubacterium limosum KIST612]
 gi|308738179|gb|ADO35839.1| recombination helicase AddA [Eubacterium limosum KIST612]
          Length = 1190

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 27/223 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +  T+ +        ++  VSA AGSGKT +L++R+ R+++        LL LT T++AA
Sbjct: 1   MRWTEDQLRAIETRKKNLLVSAAAGSGKTALLIERIRRIVVEEKTSVDALLVLTFTRSAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+   + A     D      I +I                        G   + T
Sbjct: 61  AEMKERLSAALMAELEKEDVDSDFVIAQIS---------------------RLGAASIST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +HAFC  +++ +  E  I   F + +E +   +++EA +        +   + +  F  +
Sbjct: 100 LHAFCSRLVRDYFQEGGIDPEFKLGNETELSIMLQEALEDLFEEKYQEIPADGETPFSRL 159

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +++      +  +  ++ N       +F  +     K   +SL
Sbjct: 160 VDMFTGNRDDRELKSLVEN-----FHYFLVTQPDSEKWCARSL 197


>gi|306821093|ref|ZP_07454709.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550786|gb|EFM38761.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 1149

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 32/226 (14%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           ++  + T  +Q       ++  VSA AGSGKT +L QR++ L+   +   +++L LT T 
Sbjct: 1   MNKTNWTPKQQEAIDTRNKNILVSAAAGSGKTAVLTQRIIDLITKEDVDITSMLVLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EMS R+ + +  +                 +  N   + K   ++        G  
Sbjct: 61  AAANEMSARIQKKMYEY---------------LEENRNNKHIKKQISMI-------SGAS 98

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T+H+FC  I+++    ++I  +F IA+      + +E+          + +E+    F
Sbjct: 99  ISTMHSFCIDIIRENFNFSDIDPNFVIANAATVAMIKQESISEIFEERYENQDED----F 154

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
             + +I +    ++ + +II      K+  F  S       +++ +
Sbjct: 155 LLLTDIYSSRYDDSKLINII-----YKIYNFIQSKKEPMDWLKEQV 195


>gi|294637961|ref|ZP_06716228.1| DNA helicase II [Edwardsiella tarda ATCC 23685]
 gi|291088893|gb|EFE21454.1| DNA helicase II [Edwardsiella tarda ATCC 23685]
          Length = 720

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ ++ ++  + E + A  P  +  V A AGSGKT +LV R+  LL +    P +++ 
Sbjct: 2   DVSDLLESLNDRQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVEQCSPFSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +I                                        +
Sbjct: 60  VTFTNKAAAEMRHRIEALIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PARQGMWYINGKKDDGLR 155


>gi|116618575|ref|YP_818946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271225|sp|Q03W49|ADDA_LEUMM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116097422|gb|ABJ62573.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1230

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 27/219 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            TK++Q    +   +  V+A+AGSGKT +L++R+++ +L+       L +T T AAA EM
Sbjct: 5   FTKNQQRAIEEKGHNILVAASAGSGKTTVLIERLIQKILSGVSVEKFLIVTFTNAAAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   I     ++DE                      +  L   L       + TI A
Sbjct: 65  RERLEVAIEKRLKVADES--------------------QKRFLQEQLLILPAANISTIDA 104

Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +   I++ +     +   F +  D  + K L ++     LA    +NN   ++    +  
Sbjct: 105 YALRIIEMYYHIIGLDPQFRLLSDTAERKLLQQDVLTDVLADFYDENNIHHEQFLTLVNN 164

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             N    + L       +  LKL  F  +     + +EK
Sbjct: 165 FGNPNQDDQL------QKIILKLSDFAEARADGNEWLEK 197


>gi|24372062|ref|NP_716104.1| DNA-dependent helicase II [Shewanella oneidensis MR-1]
 gi|24345940|gb|AAN53549.1|AE015495_3 DNA helicase II [Shewanella oneidensis MR-1]
          Length = 722

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +   +L+    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQLRLL----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|229552293|ref|ZP_04441018.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539702|ref|YP_003174201.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229314365|gb|EEN80338.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151378|emb|CAR90350.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus Lc 705]
          Length = 1236

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 19/202 (9%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +   T S+Q   S       VSA+AGSGKT +LV+R+++ +L  +A  + +L +T T+AA
Sbjct: 1   MTQFTPSQQAAISHHGHDMLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            +EM  ++   +          L+AE                 R  L   +      K+ 
Sbjct: 61  TSEMRTKIQTALKQTLTAKRHELNAE----------------DRRHLANQIAMVNAAKIS 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192
           T+ AF   I+Q +    ++   F +  +E  + +++E   + L       +E  E ++  
Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQEQVWNDLREQFYAGDEAAEFEQLT 164

Query: 193 YEILEISNDEDIETLISDIISN 214
                  +D  ++ L+ +++  
Sbjct: 165 ANFSGDRDDSGLQDLMFELMRQ 186


>gi|99035028|ref|ZP_01314824.1| hypothetical protein Wendoof_01000338 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 438

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 38/216 (17%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A +P  S WV+A+AG+GKT IL+ RVLRLLL N     +LCLT T AAA EM +R+  I+
Sbjct: 5   AINPNFSVWVNASAGTGKTKILIDRVLRLLLENK--RNILCLTFTNAAANEMENRIHSIL 62

Query: 87  TAWSHLSDEILSAEITKIQ-------------------------GKKPNKSDMSKARHLL 121
           + W+  SD +L+A++ ++                          G + NK  +++AR L 
Sbjct: 63  SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPYLSSQCVTLGSRKNKDYLTRARRLF 122

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
             +     GL +QTIHAFC   +  FP+EA I  +  +    + K+L        L    
Sbjct: 123 SELENL--GLTIQTIHAFCYKSISSFPIEAGIAPNCTL---SECKELHSIIFNKVL---- 173

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
             +NE ++     I    ++  +  L+  +   R+A
Sbjct: 174 --HNETVQDDINLIATEIDENKLRDLLYTLCVKRSA 207


>gi|113968817|ref|YP_732610.1| DNA-dependent helicase II [Shewanella sp. MR-4]
 gi|113883501|gb|ABI37553.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-4]
          Length = 722

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +   +L+    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLL----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQAYINGKKDQGLR 155


>gi|269958568|ref|YP_003328355.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel]
 gi|269848397|gb|ACZ49041.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel]
          Length = 867

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 14/198 (7%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           S+   +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  
Sbjct: 4   SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+
Sbjct: 62  EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++  FP E  +++ F + +       + E+     A ++ ++   + +   EI 
Sbjct: 119 HSFCHSLVASFPAETGVSADFEMRE-------LSESYPKIFAQLLREDRS-IDRDLSEIS 170

Query: 197 EISNDEDIETLISDIISN 214
               ++ +  L+  II+ 
Sbjct: 171 VELAEDTLYNLVYQIINK 188


>gi|116873698|ref|YP_850479.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123466555|sp|A0AL18|ADDA_LISW6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116742576|emb|CAK21700.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 1235

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 33/223 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            T  +         +  V+A AGSGKT +LV R++  L+    N +   LL +T T A+A
Sbjct: 14  WTDDQWKAIQANGNNILVAAAAGSGKTAVLVTRIIEKLVDETGNLNVDELLIVTFTNASA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM +R+ + +                +   + P+ S + K   LL           + T
Sbjct: 74  AEMKYRIGKSL---------------EEALSQNPDSSHLKKQVALL-------NYASIST 111

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  I+++   EA+I  +F + +  +S  + +E  +  L       N E   AF+ +
Sbjct: 112 LHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLEELLEKEYSIANNE---AFFHL 168

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +E    +  +  +  +IS     KL  F  +       +E+ +
Sbjct: 169 VESFTGDRTDAELHMLIS-----KLYDFSRANPNPDLWLEQMV 206


>gi|117918924|ref|YP_868116.1| DNA-dependent helicase II [Shewanella sp. ANA-3]
 gi|117611256|gb|ABK46710.1| ATP-dependent DNA helicase UvrD [Shewanella sp. ANA-3]
          Length = 722

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A +   F I D +   +L+    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLL----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQAYINGKKDQGLR 155


>gi|239995580|ref|ZP_04716104.1| DNA helicase II [Alteromonas macleodii ATCC 27126]
          Length = 723

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +A V A AGSGKT +LV R+  L+ + N  P ++L 
Sbjct: 2   DVSRLLDELNDKQREAVAA--PLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++                                        +
Sbjct: 60  VTFTNKAAKEMRGRIESLMGR--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + + T H     +++    EAN+  +F I D +   +LI    +  L ++ LD    
Sbjct: 82  LHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLI----RRILKAMNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +  + DE + 
Sbjct: 138 APRQIQWYINGNKDEGLR 155


>gi|114564558|ref|YP_752072.1| DNA-dependent helicase II [Shewanella frigidimarina NCIMB 400]
 gi|114335851|gb|ABI73233.1| ATP-dependent DNA helicase UvrD [Shewanella frigidimarina NCIMB
           400]
          Length = 727

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVGA--PLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV +++                                         
Sbjct: 60  VTFTNKAAAEMRERVEKVVGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +AN+   F I D +   +L+    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHYQDANLPQSFQIIDSDDQLRLL----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|56417018|ref|YP_154092.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries]
 gi|56388250|gb|AAV86837.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries]
          Length = 867

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 14/198 (7%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           S+   +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  
Sbjct: 4   SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+
Sbjct: 62  EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++  FP E  +++ F + +       + E+     A ++ ++   + +   EI 
Sbjct: 119 HSFCHSLVASFPAETGVSADFEMRE-------LSESYPKIFAQLLREDRS-IDRDLSEIS 170

Query: 197 EISNDEDIETLISDIISN 214
               ++ +  L+  II+ 
Sbjct: 171 VELAEDTLYNLVYQIINK 188


>gi|332139606|ref|YP_004425344.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549628|gb|AEA96346.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype']
          Length = 723

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +A V A AGSGKT +LV R+  L+ + N  P ++L 
Sbjct: 2   DVSRLLDELNDKQREAVAA--PLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++                                        +
Sbjct: 60  VTFTNKAAKEMRGRIESLMGR--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + + T H     +++    EAN+  +F I D +   +LI    +  L ++ LD    
Sbjct: 82  LHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLI----RRILKAMNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +  + DE + 
Sbjct: 138 APRQIQWYINGNKDEGLR 155


>gi|160946300|ref|ZP_02093509.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270]
 gi|158447416|gb|EDP24411.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270]
          Length = 1261

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 25/190 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +  TK ++ +      +  VSA AGSGKT +L++R++ L+L   +P   + LL +T TK 
Sbjct: 4   VKWTKEQRQVIDSRNTNLLVSAAAGSGKTAVLIERIIELVLDEKNPIDINKLLVVTFTKL 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+EM  RV               S  I K   +      + K   LL        G  +
Sbjct: 64  AASEMRERV---------------SKAIEKKLEENQENEHLQKQLLLL-------SGADI 101

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC+ ++  +    N+ S+  I D  +++ L +E  +     +  +N++   +   
Sbjct: 102 TTIDSFCKDVLISYAHLVNLDSNIKIIDPSENEVLAKEVMQELFEELYENNDDSFLRLVD 161

Query: 194 EILEISNDED 203
              + + DE 
Sbjct: 162 WYAKKNTDEG 171


>gi|256848517|ref|ZP_05553959.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN]
 gi|256714784|gb|EEU29763.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN]
          Length = 1281

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 39/231 (16%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHT 71
           +     T  +    +D  R   VSA+AGSGKT +LV RV++LL  N H     +L +T T
Sbjct: 1   MSSFKPTPEQTRAINDRDRDILVSASAGSGKTAVLVDRVVKLLKENRHLNIDEMLLVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           K AA  M  R+ + + A S+                             + T +      
Sbjct: 61  KEAAKNMRERIRKRLVADSND--------------------------QHMKTQINRLALA 94

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            + TIH+FCE +++++     +   +  + D  +   L E+           ++  +   
Sbjct: 95  NISTIHSFCEQVIKRYYYVIGLDPQYRLVTDATEQALLKEQVWNDLQEKRFKEDYAKADP 154

Query: 191 A---FYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +   F ++ E   D   ++   + +++      KL     +     + + +
Sbjct: 155 SKWHFSQLAENFADAKSNVGEGLQEVVE-----KLYQEANAQPDPDQWLSQ 200


>gi|94311069|ref|YP_584279.1| DNA helicase/exodeoxyribonuclease V subunit A [Cupriavidus
           metallidurans CH34]
 gi|93354921|gb|ABF09010.1| UvrD/REP helicase [Cupriavidus metallidurans CH34]
          Length = 1187

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           M   +++    +++     T      A DP RS  V A AGSGKT +LV R++RLLLA A
Sbjct: 1   MTEVHAYLRDGQSVGEADFT----RAACDPGRSVVVEACAGSGKTWLLVARLVRLLLAGA 56

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT-KIQGKKPNKSDMSKARH 119
            P  +L +T T+ AA EM  R+LE+++  +  +DE +  ++  +       ++ + +AR 
Sbjct: 57  APHEILAITFTRKAAEEMRERLLEVLSQLAGGTDEAVLTQLEMRGLSPDAARAALPRART 116

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           L   +L +PG + + T H +   +++  PL + I    ++   E + ++  EA      +
Sbjct: 117 LHAQVLASPGRMAIDTFHGWFGTLLRGAPLSSGIVPGASL--REDALRMKREAWAPFWRA 174

Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
           +      +L++A+  +++   D     L+  +   R   
Sbjct: 175 LAQPQYADLREAYEALVDAIGDFQARGLLDRMFHARNEW 213


>gi|290477108|ref|YP_003470021.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii
           SS-2004]
 gi|289176454|emb|CBJ83263.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii
           SS-2004]
          Length = 721

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 45/220 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + E + AS    +  V A AGSGKT +LV R+  LL + NA P +++ 
Sbjct: 2   DVSYLLESLNDKQREAVTAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  +AAEM HR+  +I                                        +
Sbjct: 60  VTFTNKSAAEMRHRIENLIGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H+    +++   L+AN+   F I D E   +LI    K  + ++ LD+ + 
Sbjct: 82  QGGMWIGTFHSLAHRLLRFHHLDANLPQDFQILDSEDQHRLI----KRIIKAMNLDDKQW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             +     +    DE +     +I  N      +  + +Y
Sbjct: 138 PARQGMWYINGKKDEGLRPQHIEIYGNPVETTWMKIYQAY 177


>gi|89092193|ref|ZP_01165147.1| DNA helicase II [Oceanospirillum sp. MED92]
 gi|89083281|gb|EAR62499.1| DNA helicase II [Oceanospirillum sp. MED92]
          Length = 737

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +  ID ++  +   + A  P ++  V A AGSGKT +LV R+  L+      P +++ 
Sbjct: 2   DVTHIIDSLNDAQRNAVTA--PVKNLLVLAGAGSGKTRVLVHRIAWLIQTEGISPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ E++                                         
Sbjct: 60  VTFTNKAAKEMRGRIEELLG--------------------------------------LN 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P G+ V T H     +++    +A +  +F I D +   +LI+   K     + LD+   
Sbjct: 82  PQGMWVGTFHGLAHRLLRAHWQDAGLPENFQIMDSDDQLRLIKRLAK----EMGLDDKRW 137

Query: 188 LKKAFYEILEISNDEDIET 206
             + F   +    D  +  
Sbjct: 138 PPRQFQWYINDKKDNGLRA 156


>gi|148826204|ref|YP_001290957.1| DNA-dependent helicase II [Haemophilus influenzae PittEE]
 gi|229846218|ref|ZP_04466330.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1]
 gi|148716364|gb|ABQ98574.1| DNA helicase II [Haemophilus influenzae PittEE]
 gi|229811222|gb|EEP46939.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1]
          Length = 726

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 41/220 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H+    +++   L+  +   F I D E  ++LI    K  L     D    
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLI----KRLLKLHNFDEKAF 141

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +    DE +     +  ++R   + I  +  Y
Sbjct: 142 PPKQACWYINNKKDEGLRPNDIEDFNDRQEREWIKIYQIY 181


>gi|170728818|ref|YP_001762844.1| DNA-dependent helicase II [Shewanella woodyi ATCC 51908]
 gi|169814165|gb|ACA88749.1| DNA helicase II [Shewanella woodyi ATCC 51908]
          Length = 721

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++  +                                       
Sbjct: 60  VTFTNKAAAEMRERVEKVSGS--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHYQDANLPQTFQIIDSDDQLRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|94970649|ref|YP_592697.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552699|gb|ABF42623.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus
           Koribacter versatilis Ellin345]
          Length = 1135

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 11/206 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAA 74
           I+    E+    D TRS  V A AGSGKT +L+QR L LL       P ++L +T T+ A
Sbjct: 11  IAPDADERAKVLDATRSFIVQAPAGSGKTELLMQRYLTLLAHESVTTPESVLAITFTRKA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM +RVL+ + + +  + E   A    +   +  +  M++ R +   IL+ P  L+++
Sbjct: 71  AAEMRNRVLKALESANGPAPESAHA----LLSWELARKVMARDRAMGWNILQNPEQLEIR 126

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+ +FCE I  + PL A +    AIA++ +   L  EA + TL  ++ D   E ++A  +
Sbjct: 127 TVDSFCEKIANRTPLLAGLGRSPAIAEDFE--PLYSEAAQRTLL-MLGDEKAETREAMSQ 183

Query: 195 ILEISND--EDIETLISDIISNRTAL 218
           +L   ++  + ++ LI +++  R   
Sbjct: 184 VLADQDNSFDRVQGLIVELLKRREQW 209


>gi|134299275|ref|YP_001112771.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1]
 gi|251764523|sp|A4J4E3|ADDA_DESRM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|134051975|gb|ABO49946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Desulfotomaculum
           reducens MI-1]
          Length = 1244

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +    +    +  V+A AG+GKT +LV+R++ L+     P     LL +T T AAA
Sbjct: 6   WTAEQLAAITTRDTNLLVAAAAGAGKTAVLVERIIGLITDPHRPVDVDQLLIVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + ++               K   + P+   +++   +L           + T
Sbjct: 66  AEMRERIGQALS---------------KALQENPHSKRLARQLTML-------NRASITT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++  + ++   F +ADE +++ L  +  +         +N E+   F  +
Sbjct: 104 LHSFCLDLLRRYFYQLDLDPGFRVADEVEAELLRLDVLEELFERRYNQDNVEV---FARL 160

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++    +  ++ + D++     L+L  F  S+    + +  
Sbjct: 161 VDSYGGQRDDSRLQDLV-----LELYRFSGSHPLPVQWLTS 196


>gi|114049045|ref|YP_739595.1| DNA-dependent helicase II [Shewanella sp. MR-7]
 gi|113890487|gb|ABI44538.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-7]
          Length = 722

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +A++   F I D +   +L+    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDADLPQSFQILDSDDQVRLL----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQAYINGKKDQGLR 155


>gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
 gi|125862238|gb|ABN57427.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
          Length = 1080

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 30/199 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T+ +   A D + S  V+A AG+GKTH+LVQ+ L LL +      +L LT T+ AA 
Sbjct: 1   MGLTERQARAALDHSTSKCVTAGAGTGKTHVLVQKYLSLLESGVGVGNILALTFTEKAAG 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV   I        + +  E                               KV T 
Sbjct: 61  EMKIRVRRAIAEKEGERWDAIRDEFLW---------------------------AKVSTF 93

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++++F + A +   FA+ DE ++ +L EEA    +     D     + A    L
Sbjct: 94  HSFCASVLREFSIGAGVGPSFAVLDEGEAFRLREEAIDDLIH---GDPPTACRDAVIGAL 150

Query: 197 EISNDEDIETLISDIISNR 215
                 +++  +  + S R
Sbjct: 151 RAVGAYELKNYLEALYSRR 169


>gi|291615722|ref|YP_003518464.1| UvrD [Pantoea ananatis LMG 20103]
 gi|291150752|gb|ADD75336.1| UvrD [Pantoea ananatis LMG 20103]
          Length = 723

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 45/200 (22%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
             + SE +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P ++
Sbjct: 3   LMDVSELLDGLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSI 60

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           + +T T  AAAEM HR+ ++I                                       
Sbjct: 61  MAVTFTNKAAAEMRHRIEQLIGT------------------------------------- 83

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + G   + T H     +++   L+A +   F I D E   +L+    K  + ++ LD  
Sbjct: 84  -SQGECGLGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEK 138

Query: 186 EELKKAFYEILEISNDEDIE 205
           +   +     +    DE + 
Sbjct: 139 QWPARQGMWYINGKKDEGLR 158


>gi|325578673|ref|ZP_08148749.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
 gi|325159712|gb|EGC71843.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
          Length = 725

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 41/220 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ + ++  +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQDTLSKHAQP----------------------------------N 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H+    +++    + N+   F I D E   +L     K  +     D+   
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHFDVNLPQDFQILDSEDQLRL----VKRLMKLHNYDDKAF 141

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +    DE +     D   +R   + I  +  Y
Sbjct: 142 PPKQACWYINNKKDEGLRPQDIDDFGDRQEKEWIKIYQIY 181


>gi|301156005|emb|CBW15476.1| DNA-dependent ATPase I and helicase II [Haemophilus parainfluenzae
           T3T1]
          Length = 725

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 41/220 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ + ++  +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQDTLSKHAQS----------------------------------N 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H+    +++   L+ N+   F I D E   +L     K  +     D+   
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHLDVNLPQDFQILDSEDQLRL----VKRLMKLHNYDDKAF 141

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +    DE +     D   +R   + I  +  Y
Sbjct: 142 PPKQACWYINNKKDEGLRPQDIDDFGDRQEKEWIKIYQIY 181


>gi|127514313|ref|YP_001095510.1| DNA-dependent helicase II [Shewanella loihica PV-4]
 gi|126639608|gb|ABO25251.1| ATP-dependent DNA helicase UvrD [Shewanella loihica PV-4]
          Length = 726

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++  +                                       
Sbjct: 60  VTFTNKAAAEMRERVEKVSGS--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQLRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|71906108|ref|YP_283695.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
 gi|71845729|gb|AAZ45225.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
          Length = 1134

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 10/208 (4%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ID + + +  +  A +   S  V A AG+GKT +L QR LRLL    HP  +L LT T 
Sbjct: 4   AIDRLEEDRIARQRALEVA-SFIVEAPAGAGKTELLTQRYLRLLAVVEHPEEVLALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+   + +    S + L  +  K       +  ++       ++L  PG L+
Sbjct: 63  KAATEMRDRI---LGSLELASGDKLPEQPHKQLTFGLARQVLAHDAERGWSLLGHPGRLR 119

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T+ + C ++ +Q P  +   S   ++D+ ++      A + TL   M+++  +  +  
Sbjct: 120 ITTLDSLCASLARQMPYLSRFGSQPGVSDDAEAH--YATAARRTLE--MVESGSDDAEVI 175

Query: 193 YEILEISNDE--DIETLISDIISNRTAL 218
            E L   ++    +E L+  ++  R   
Sbjct: 176 AEALAFMDNNAGRLEKLLIAMLGRRDQW 203


>gi|120611309|ref|YP_970987.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120589773|gb|ABM33213.1| DNA helicase/exodeoxyribonuclease V, subunit A [Acidovorax citrulli
           AAC00-1]
          Length = 1168

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 10/202 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+LE
Sbjct: 24  AIACDPARSVAVEACAGAGKTWMLVSRILRALLEGCEPHEILAITFTKKAAGEMRQRLLE 83

Query: 85  IITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + A+S      L  E+    I  ++      ++ + L + +L     ++++T H++  A
Sbjct: 84  WLEAFSRTPLPALRGELLARGIPAEQATDDACARLQGLFLQVLGAGRPVQIRTFHSWFAA 143

Query: 143 IMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           ++   PL       +  +F + +++   + +       L  +  D    L   F + + +
Sbjct: 144 LLGTAPLAVLQSRGLPLNFELLEDD--AEAVRRVWPLFLQQVAADAG--LGADFADSVAL 199

Query: 199 SNDEDIETLISDIISNRTALKL 220
                    +   ++ R   +L
Sbjct: 200 HGRSQTRKALEAALAKRVEFEL 221


>gi|295396964|ref|ZP_06807086.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563]
 gi|294974817|gb|EFG50522.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563]
          Length = 1287

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 20/196 (10%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT +LVQR+L+ +        LL +T T+ AA+EM 
Sbjct: 21  TADQWAAIHLEGDNLLVSASAGSGKTSVLVQRILQKVRRGYGVDELLVVTFTEKAASEMK 80

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +                       N+   + +R   +  +       + TI AF
Sbjct: 81  ERLEVALQEM-------------------INEESDADSRQHYLQQIAKLPQANISTIDAF 121

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           C+ ++Q++    ++   + +  DE ++    E   +S    ++ + N E  +        
Sbjct: 122 CKQVIQRYYFLIDLDPVYRLLTDETENMMHFENVWESLKEDLLAEGNPEYLRMANYFASD 181

Query: 199 SNDEDIETLISDIISN 214
             D+ I+ LI D+ + 
Sbjct: 182 RKDDKIDRLIFDLYNK 197


>gi|184154513|ref|YP_001842853.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956]
 gi|251764528|sp|B2GEY4|ADDA_LACF3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|183225857|dbj|BAG26373.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956]
          Length = 1337

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 97/210 (46%), Gaps = 39/210 (18%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------AHPSTLLC 67
           + +K ++   +D  +   VSA+AGSGKT +LV+RV++L+              +   +L 
Sbjct: 4   TPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDILM 63

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA  M  R+   +   +   DE + A++ ++                       
Sbjct: 64  VTFTTDAAKNMRDRIRRRLVGAT---DEHMKAQVARL----------------------- 97

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                + TIH+FCE +++++    ++   F + D+ + + L E+A ++TL   + + ++ 
Sbjct: 98  -ALANISTIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQATLDDWVANPDQ- 155

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTA 217
              A +++++     ++E+++  + +   A
Sbjct: 156 -VGALHQLIDNFGAGNLESVVQALDTEADA 184


>gi|320529153|ref|ZP_08030245.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399]
 gi|320138783|gb|EFW30673.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399]
          Length = 1281

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 27/228 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           +  T  +Q       ++  V+A AGSGKT +LV+R++  + +       +L LT TKAAA
Sbjct: 5   MRFTADQQRAIETRGQNILVAAAAGSGKTRVLVERIIAQVRSGELSLDRVLVLTFTKAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+           +  L+AEI +I  ++   SD  +    L        G  + T
Sbjct: 65  AEMRERI-----------ETALNAEIDRIAEERAATSDADEEIAALERQRILLTGADIST 113

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS----IMLDNNEELKKA 191
            H+FC+ I+Q +     I  ++ +A E++   L  +  +  L           + E   A
Sbjct: 114 FHSFCQRILQTYIEATQIPPNYRLASEQEILLLTNDVFERLLEEKYSAAAAQGDAEGFLA 173

Query: 192 FYEIL--EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           F +    +   DE ++  +         L L  F  S       +   
Sbjct: 174 FADAYVGDKGGDERLQKAV---------LALYKFALSQPSPETWLAAQ 212


>gi|58617374|ref|YP_196573.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Gardel]
 gi|58416986|emb|CAI28099.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Gardel]
          Length = 857

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 13/183 (7%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            W+SA+AG+GKT ILV RVL+LL+       +LCLT T AAA EM+ R+   ++AW+ L+
Sbjct: 13  IWISASAGTGKTRILVNRVLKLLITGH--QNILCLTFTNAAAYEMTERIHSTLSAWTTLT 70

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D  L  ++ +I        ++ +AR L  +I      L ++TIH+FC  ++  FP+EA I
Sbjct: 71  DTELKTDLQEIIHSNITAQELHQARRLFNSIHNI--SLSIKTIHSFCYQLISAFPIEAGI 128

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
           + +  + D  +S     +    TL  + + +N         I     ++ +  L+  ++S
Sbjct: 129 SPNCIVKDLSES---FPKIFYKTLNDVTIKHN------ISAISSEITEKTLYDLLYKLLS 179

Query: 214 NRT 216
           N+ 
Sbjct: 180 NQD 182


>gi|116749176|ref|YP_845863.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB]
 gi|116698240|gb|ABK17428.1| DNA helicase/exodeoxyribonuclease V, subunit A [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1162

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 6/167 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++  + DP+ S  + A AGSGKT +L  R LRLL    HP  +L +T T  AA+EM  R
Sbjct: 15  EQRARSLDPSGSFHLEAPAGSGKTFLLTARFLRLLGLVEHPQQILAMTFTNKAASEMRER 74

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTIHAFC 140
           V   +                +  G+  + +  + ARH     L   G  L++QT H+FC
Sbjct: 75  VCRYLQRAKRGERPE-----AEPDGELLDAAAKALARHQAHEPLLMGGELLRIQTFHSFC 129

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            A+  Q PLEA I     +  E +    + E    TL  + L   E+
Sbjct: 130 HALAAQAPLEAGIAPGSTLMAEPEQTFFLREVIDDTLREVALRRPED 176


>gi|222475386|ref|YP_002563803.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Florida]
 gi|255004493|ref|ZP_05279294.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Virginia]
 gi|222419524|gb|ACM49547.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Florida]
          Length = 867

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           S+   +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  
Sbjct: 4   SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+
Sbjct: 62  EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST--LASIMLDNNEELKKAFYE 194
           H+FC +++  FP E  +++ F           + E   S   + + +L  +  + +   E
Sbjct: 119 HSFCHSLVASFPAETGVSADFE----------MRELSWSYPKIFAQLLREDRSIDRDLSE 168

Query: 195 ILEISNDEDIETLISDIISNRTALKLIF 222
           I     ++ +  L+  II+ +  +  I 
Sbjct: 169 ISVELAEDTLYNLVYQIINKQHKIVPIE 196


>gi|74316051|ref|YP_313791.1| DNA helicase/exodeoxyribonuclease V subunit A [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055546|gb|AAZ95986.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 1089

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 3/207 (1%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +  +A  P RSA V A AGSGKT +LV R+LRLLLA A PS LL +T T+ AA EM+ R+
Sbjct: 6   DAAIALSPNRSAVVEACAGSGKTWLLVSRMLRLLLAGAAPSELLAITFTRKAAQEMTDRL 65

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTIHAFCE 141
            E +   +   D  + A + + +       + + +AR LL  +L    G  V T H +  
Sbjct: 66  HEWLRVLALADDATVRAFLREREVPADEIDALLPRARGLLEAVLSAQPGPTVTTFHGWFL 125

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++ PLEA +     + + E   +L+ E ++   A            A   +L    +
Sbjct: 126 DLLKRAPLEAGLPWGAPLLERE--SELLNEVRERLFARWAAAPASPEGAALLALLASLGE 183

Query: 202 EDIETLISDIISNRTALKLIFFFFSYL 228
            ++  L+ + I+ R   +      +  
Sbjct: 184 HNLRALLRNFIAARIEWQAFARDQADP 210


>gi|254995195|ref|ZP_05277385.1| hypothetical protein AmarM_04376 [Anaplasma marginale str.
           Mississippi]
          Length = 866

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 15/198 (7%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           S+   +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  
Sbjct: 4   SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+
Sbjct: 62  EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +++  FP E  +++ F          + E +    + + +L  +  + +   EI 
Sbjct: 119 HSFCHSLVASFPAETGVSADFE---------MRELSSYPKIFAQLLREDRSIDRDLSEIS 169

Query: 197 EISNDEDIETLISDIISN 214
               ++ +  L+  II+ 
Sbjct: 170 VELAEDTLYNLVYQIINK 187


>gi|88658223|ref|YP_507207.1| ATP-dependent DNA helicase UvrD [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599680|gb|ABD45149.1| ATP-dependent DNA helicase, UvrD/Rep family [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 860

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 18/207 (8%)

Query: 26  LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           +A++P  S  W+SA+AG+GKT ILV RVLRLL+       +LCLT T  AA EM+ R+  
Sbjct: 4   IATNPFYSFIWISASAGTGKTKILVNRVLRLLVTGHK--NILCLTFTNTAAHEMTERIHS 61

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           II+ W+ L +E L   +  I        +  +AR L   +      L ++TIH+FC  ++
Sbjct: 62  IISTWAILKNEELKKALKDIIPTNITPKEYKRARELFNNLQNV--SLSIKTIHSFCYQLI 119

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
             FP+E  I    +I D         E+       ++  ++   K     I     +  I
Sbjct: 120 STFPIETGIAPDCSIKD-------FSESFTKIFHKLL--HDPTTKHHLSAISHEITEATI 170

Query: 205 ETLISDIISNRTALKLIFFFFSYLWRR 231
             L+  +++     +   F  + ++++
Sbjct: 171 YDLLYKLLNK----QHYNFNQNSIYKK 193


>gi|255003370|ref|ZP_05278334.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Puerto Rico]
          Length = 867

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           S+   +Q  A+DP R   W+SA+AG+GKT +LV RV+RL+++      +LCLT T AA  
Sbjct: 4   SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV  I+  W  L  E L   + ++  ++ +     +AR L     + P  LK+QT+
Sbjct: 62  EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST--LASIMLDNNEELKKAFYE 194
           H+FC +++  FP E  +++ F           + E   S   + + +L  +  + +   E
Sbjct: 119 HSFCHSLVASFPAETGVSADFE----------MRELSWSYPKIFAQLLREDRSIDRDLSE 168

Query: 195 ILEISNDEDIETLISDIISNRTALKLIF 222
           I     ++ +  L+  II+ +  +  I 
Sbjct: 169 ISVELAEDTLYNLVYQIINKQHKIVPIE 196


>gi|57239354|ref|YP_180490.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579320|ref|YP_197532.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57161433|emb|CAH58357.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417946|emb|CAI27150.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 857

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 13/183 (7%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            W+SA+AG+GKT ILV RVL+LL+       +LCLT T AAA EM+ R+   ++AW+ L+
Sbjct: 13  IWISASAGTGKTRILVNRVLKLLITGH--QNILCLTFTNAAAYEMTERIHSTLSAWTTLT 70

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D  L  ++ +I        ++ +AR L  +I      L ++TIH+FC  ++  FP+EA I
Sbjct: 71  DTELKTDLQEIIHSNITVQELHQARRLFNSIHNI--SLSIKTIHSFCYQLISAFPIEAGI 128

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
           + +  + D  +S     +    TL  + + +N         I     ++ +  L+  ++S
Sbjct: 129 SPNCIVKDLSES---FPKIFYKTLNDVTIKHN------ISAISSEITEKTLYDLLYKLLS 179

Query: 214 NRT 216
           N+ 
Sbjct: 180 NQD 182


>gi|121607642|ref|YP_995449.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121552282|gb|ABM56431.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 1140

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 100/204 (49%), Gaps = 15/204 (7%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+ E
Sbjct: 28  AIACDPARSVAVQACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQE 87

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKA--RHLLITILETPGGLKVQTIHAFCEA 142
            +  ++    E LSAE+   +G +P ++   +A  ++L   +L++   ++++T H++  A
Sbjct: 88  WLEEFAQAPPERLSAELVA-RGMRPERALEQRAALQNLYRQLLDSGRPVQIRTFHSWFAA 146

Query: 143 IMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIM--LDNNEELKKAFYEIL 196
           ++   PL       + + F + +++       EA ++  +  +  +  +  L+  +  ++
Sbjct: 147 LLGMAPLALLQAQGLPTQFQLLEDD------AEAVRAVWSPFLHTVAGDAGLRADYTAVV 200

Query: 197 EISNDEDIETLISDIISNRTALKL 220
                      ++  ++ R    L
Sbjct: 201 ARHGRSQTHKALAAALNRRVEFDL 224


>gi|260582117|ref|ZP_05849911.1| DNA helicase II [Haemophilus influenzae NT127]
 gi|260094749|gb|EEW78643.1| DNA helicase II [Haemophilus influenzae NT127]
          Length = 727

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 41/220 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DIAELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H+    +++   L+  +   F I D E  ++LI    K  L     D    
Sbjct: 87  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLI----KRLLKLHNFDEKAF 142

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +    DE +     +  ++R   + I  +  Y
Sbjct: 143 PPKQACWYINNKKDEGLRPNDIEDFNDRQEREWIKIYQIY 182


>gi|145641213|ref|ZP_01796793.1| DNA helicase II [Haemophilus influenzae R3021]
 gi|145274050|gb|EDK13916.1| DNA helicase II [Haemophilus influenzae 22.4-21]
          Length = 726

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 41/220 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DIAELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H+    +++   L+  +   F I D E  ++LI    K  L     D    
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLI----KRLLKLHNFDEKAF 141

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +    DE +     +  ++R   + I  +  Y
Sbjct: 142 PPKQACWYINNKKDEGLRPNDIEDFNDRQEREWIKIYQIY 181


>gi|94677005|ref|YP_588596.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220155|gb|ABF14314.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 646

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 76/196 (38%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  LL + N  PS++L +T
Sbjct: 4   SHLLDSLNNKQKEAVSA--PLGNILVLAGAGSGKTRVLTHRIAWLLAVENNPPSSILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM +R+  I+                                         P 
Sbjct: 62  FTNKAATEMYYRIKNILGK--------------------------------------HPC 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+ + T H+    I++   +EAN+   F I D E   KL+    K  +  + LD N    
Sbjct: 84  GMWIGTFHSLAYRILRIHYIEANLPKDFHIIDSEDQHKLL----KRLIRYLNLDENYWSA 139

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE   
Sbjct: 140 RQAMCYINAKKDEGYR 155


>gi|254780085|ref|YP_003058192.1| putative recombination protein RecB [Helicobacter pylori B38]
 gi|254001998|emb|CAX30257.1| ATP-dependent DNA helicase [Helicobacter pylori B38]
          Length = 945

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A+ +    L     +++ TI AF ++I+
Sbjct: 65  KENLESGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---D 201
           ++F     ++++F +   E +K   ++  +  L+++  +  EEL     + L   N   D
Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNNEQLEELSVFITQCLSYDNYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SILERL 186


>gi|68171208|ref|ZP_00544613.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999363|gb|EAM86007.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 860

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 18/207 (8%)

Query: 26  LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           +A++P  S  W+SA+AG+GKT ILV RVLRLL+       +LCLT T  AA EM+ R+  
Sbjct: 4   IATNPFYSFIWISASAGTGKTKILVNRVLRLLVTGHK--NILCLTFTNTAAHEMTERIHS 61

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           II+ W+ L +E L   +  I        +  +AR L   +      L ++TIH+FC  ++
Sbjct: 62  IISTWAILKNEELKKALKDIIPTNITPKEYKRARELFNNLQNV--SLSIKTIHSFCYQLI 119

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
             FP+E  I    +I D         E+       ++  ++   K     I     +  I
Sbjct: 120 STFPIETGIAPDCSIKD-------FSESFTKIFHKLL--HDPTTKHHLSAISHEITEATI 170

Query: 205 ETLISDIISNRTALKLIFFFFSYLWRR 231
             L+  +++     +   F  + ++++
Sbjct: 171 YDLLYKLLNK----QHYNFNQNSIYKK 193


>gi|294142649|ref|YP_003558627.1| DNA helicase II [Shewanella violacea DSS12]
 gi|293329118|dbj|BAJ03849.1| DNA helicase II [Shewanella violacea DSS12]
          Length = 721

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++    ++     P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLND--EQRAAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++  +                                       
Sbjct: 60  VTFTNKAAAEMRDRVEKVSGS--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHYKDANLPQTFQIIDSDDQLRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|317179739|dbj|BAJ57527.1| helicase [Helicobacter pylori F30]
          Length = 949

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 15/188 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 90  -SHLSDEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEA 142
             +L DE    +   I  +   K  +      ++A+ +    L     +++ TI AF ++
Sbjct: 65  KENLEDEKEKEKSQNILKELEEKYRLNPSFVQNRAQKIYQRFLN--AEIRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199
           I+++F     ++++F +   E +K   ++  +S L+++  +  EEL     + L      
Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNESFLSALNGEQLEELSVFIAQCLSYDSYT 180

Query: 200 NDEDIETL 207
           +D  +E L
Sbjct: 181 SDSILERL 188


>gi|157373608|ref|YP_001472208.1| DNA-dependent helicase II [Shewanella sediminis HAW-EB3]
 gi|157315982|gb|ABV35080.1| DNA helicase II [Shewanella sediminis HAW-EB3]
          Length = 721

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLNDEQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++  +                                       
Sbjct: 60  VTFTNKAAAEMRERVEKVSGS--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHYKDANLPQTFQIIDSDDQLRLI----KRILKSLHLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|308069947|ref|YP_003871552.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681]
 gi|305859226|gb|ADM71014.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681]
          Length = 1339

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 32/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            +  +    S+   +  V+A AGSGKT +LV+R++R ++          LL  T TKAAA
Sbjct: 18  WSDDQWRAISESGNNMLVAAAAGSGKTAVLVERIIRKIVDPQLGFSVDRLLVATFTKAAA 77

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                ++  ++P    + +   LL           + T
Sbjct: 78  AEMRQRIREAL---------------ERVLEQEPESEHVRRQLSLL-------NRASITT 115

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  ++++      +   F I +E +++ L +E  +         ++E     F  +
Sbjct: 116 LHSFCMEVIRRHYQAIPLDPGFRIMNEHETELLRQELLEELFEEKYEAHDE--GSTFRRL 173

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  + E  +  +  ++      +L  F  S+ W    + +
Sbjct: 174 VDWFSGERTDDAMYVLVQ-----RLYDFSQSHPWPEHWLRE 209


>gi|254514374|ref|ZP_05126435.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3]
 gi|219676617|gb|EED32982.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3]
          Length = 1108

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 9/204 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             +  A DP  S  VSA AGSGKT +LV+R L LL     P  ++ +T T+ AAAEM  R
Sbjct: 7   DARERAVDPLGSFCVSAPAGSGKTGLLVRRFLGLLARVKDPEHVVAITFTRKAAAEMRAR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V+  +         + +    +        +     R L   +L  P  L++QTI +FC 
Sbjct: 67  VVNALRDAEA---GVTAGNPHEEALLAAAHAVREHDRALGWGLLANPSRLRIQTIDSFCG 123

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            + +Q P+ +         D   S+ L  EA +S L   +    E        +L +  D
Sbjct: 124 YLTRQMPVLSGCGGQVTATD--DSRPLFREAIESFLHRELAQAGEGQALDIQTLL-LHLD 180

Query: 202 EDIET---LISDIISNRTALKLIF 222
            D ET   L+S +++ R   + +F
Sbjct: 181 NDWETAVELLSGLLARREQWQPVF 204


>gi|308185340|ref|YP_003929473.1| putative recombination protein RecB [Helicobacter pylori SJM180]
 gi|308061260|gb|ADO03156.1| putative recombination protein RecB [Helicobacter pylori SJM180]
          Length = 953

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A+ +    L     +++ TI AF ++I+
Sbjct: 65  KENLESGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---D 201
           ++F     ++++F +   E +K   ++  +  L+++  +  EEL     + L   N   D
Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNNEQLEELSVFITQCLSYDNYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SILERL 186


>gi|219871258|ref|YP_002475633.1| DNA-dependent helicase II [Haemophilus parasuis SH0165]
 gi|219691462|gb|ACL32685.1| DNA-dependent helicase II [Haemophilus parasuis SH0165]
          Length = 727

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 42/221 (19%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENIAESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   ++  S                                     
Sbjct: 60  VTFTNKAAAEMRHRIEYTLSQSSD----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ V T H+    +++   L+AN+   F I D E  ++LI    K  L    LD  + 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDTEDQQRLI----KRLLKLHNLDEKQF 141

Query: 188 LKKAFYEILEISNDEDIE-TLISDIISNRTALKLIFFFFSY 227
             K     +    D+ +    +     +  + +L+ F+  Y
Sbjct: 142 PPKQVAWFINAQKDQGLRAKDLKQSHDDPHSQQLVKFYQIY 182


>gi|260662573|ref|ZP_05863468.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN]
 gi|260553264|gb|EEX26207.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN]
          Length = 1337

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 96/210 (45%), Gaps = 39/210 (18%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------AHPSTLLC 67
           + +K ++   +D  +   VSA+AGSGKT +LV+RV++L+              +   +L 
Sbjct: 4   TPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDILM 63

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA  M  R+   +   +   DE + A++ ++                       
Sbjct: 64  VTFTTDAAKNMRDRIRRRLVGAT---DEHMKAQVARL----------------------- 97

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                + TIH+FCE +++++    ++   F + D+ + + L E+A + TL   + + ++ 
Sbjct: 98  -ALANISTIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQVTLDDWVANPDQ- 155

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTA 217
              A +++++     ++E+++  + +   A
Sbjct: 156 -VGALHQLIDNFGAGNLESVVQALDTEADA 184


>gi|91791848|ref|YP_561499.1| DNA-dependent helicase II [Shewanella denitrificans OS217]
 gi|91713850|gb|ABE53776.1| ATP-dependent DNA helicase UvrD [Shewanella denitrificans OS217]
          Length = 722

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSRLLDGLNDEQREAVGA--PLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++  +                                       
Sbjct: 60  VTFTNKAAAEMRERVEKVAGS--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +AN+   F I D +   +L+    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHFQDANLPQSFQIIDSDDQLRLL----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|15612511|ref|NP_224164.1| putative recombination protein RecB [Helicobacter pylori J99]
 gi|4156072|gb|AAD07027.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
          Length = 946

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A+ +    L     +++ TI AF ++I+
Sbjct: 65  KENLESEKEKSQNILKELEEKYHLDPSLVRNNAQKIYQRFLN--AEVRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---D 201
           ++F     ++++F + ++ ++     +  +  L+++     EEL     + L   N   D
Sbjct: 123 RKFCWFVGLSANFEVNEDTEAH--QRQLNEGFLSALNNKQLEELSAFIVQCLSYDNYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SILERL 186


>gi|208435433|ref|YP_002267099.1| ATP-dependent nuclease [Helicobacter pylori G27]
 gi|208433362|gb|ACI28233.1| ATP-dependent nuclease [Helicobacter pylori G27]
          Length = 963

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 13/183 (7%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +      +
Sbjct: 1   MALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQQEN 60

Query: 94  DEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            E    +   I  +   K  +        A+ +    L     +++ TI AF ++I+++F
Sbjct: 61  LENEKEKSQNILKELEEKYHLDPDLVQNSAQKIYQRFLN--AEIRISTIDAFFQSILRKF 118

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---NDEDI 204
                ++++F +   E +K    +  +S L+++  +  EEL     + L      +D  +
Sbjct: 119 CWFVGLSANFEV--NEDTKAHQRQLNESFLSALNGEQLEELSVFIAQCLSYDSYTSDSIL 176

Query: 205 ETL 207
           E L
Sbjct: 177 ERL 179


>gi|254480724|ref|ZP_05093971.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039307|gb|EEB79967.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 1115

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 7/207 (3%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++  A D  RS  V+A AGSGKT +L+QR L LL     P  +L +T T+ AAAEM  RV
Sbjct: 8   DRAEALDVVRSFCVTAPAGSGKTELLIQRFLALLARVKRPEQVLAITFTRKAAAEMRERV 67

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           L+ + A     D++      +   +    + +  +      +      L ++TI +FC  
Sbjct: 68  LQALQA---ARDKVAVEGEHQRVTRDLALAALESSDREQWHLARDISRLNIKTIDSFCAG 124

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           + +Q P+ +         D   + +L +EA    L SI   +  E       +L   N+ 
Sbjct: 125 LTRQMPILSRFGGQAQAVD--DATELYKEAVSE-LFSIAGTSRSEATDLDILLLHFDNNW 181

Query: 203 D-IETLISDIISNRTALKLIFFFFSYL 228
           D +  L+  ++  R    L        
Sbjct: 182 DRLRELLVTMLGKRDQWHLYMGAKRSP 208


>gi|262273203|ref|ZP_06051019.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP
           101886]
 gi|262222781|gb|EEY74090.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP
           101886]
          Length = 725

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ID ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ 
Sbjct: 2   DVSHLIDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLVHRIAWLMQVEYASPFSVMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ +++                                        T
Sbjct: 60  VTFTNKAAAEMRGRIEQLMQG--------------------------------------T 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             GL   T H  C  I++   L+AN+   F I D +  ++L+    +  + +  LD    
Sbjct: 82  ASGLWCGTFHGLCHRILRAHHLDANLPQDFQILDSDDQQRLL----RRLIKAQNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQASWYINAKKDEGLR 155


>gi|95929583|ref|ZP_01312325.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95134280|gb|EAT15937.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 1101

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 9/230 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           TIDL+      + LA DPTRS  V A AGSGKT +L+QR L LL     P  +L +T T+
Sbjct: 3   TIDLVD--APARRLAVDPTRSCLVRAPAGSGKTELLIQRFLALLATVPRPDAILAITFTR 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RVL+ + A      +   A   +    +   + + +   L   + + P  L+
Sbjct: 61  KAAAEMRQRVLDALLAAQQPLPD--QAGEHQRTTYRLATAVLQRNETLAWNLFDHPQQLQ 118

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKA 191
           +QTI +F  +++ + P  + +    AI+D  Q ++L  +A +  LA+    D      + 
Sbjct: 119 IQTIDSFNASLVARMPWLSRLGGLPAISD--QPRQLYRQAVRQLLAASRTTDKLNRGLRQ 176

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
               L+  +D   E L+  +      L+ +F     +  R  ++++L ++
Sbjct: 177 LQYHLDNRSDRLEELLVQLLERRDQWLRHLFG--DQVRPRDELQQALEAV 224


>gi|160879499|ref|YP_001558467.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
 gi|160428165|gb|ABX41728.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
          Length = 807

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 78/219 (35%), Gaps = 45/219 (20%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           S    ++           + A AGSGKT +L  R+  L+   N +P  ++ LT T  AA 
Sbjct: 6   SLNPEQRRAVEHDRGPMLILAGAGSGKTRVLTHRIAYLIEERNVNPYQIMALTFTNKAAK 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +I+   +                                        + V T 
Sbjct: 66  EMRERVDKIVGYGAE--------------------------------------NIWVSTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+ C  I+++F        +F I D +  K LI E     L  + +D  +  ++ F   +
Sbjct: 88  HSTCVRILRRFIETLGYDRNFTIYDTDDQKTLIRE----VLKFLQIDTKQTKERVFLSAI 143

Query: 197 EISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRRKI 233
             + DE I  E      + +   +K+   +  Y  R K 
Sbjct: 144 SSAKDEGISPEEFELSALGDYNKMKISNVYKEYQRRLKT 182


>gi|146313611|ref|YP_001178685.1| DNA-dependent helicase II [Enterobacter sp. 638]
 gi|145320487|gb|ABP62634.1| ATP-dependent DNA helicase UvrD [Enterobacter sp. 638]
          Length = 720

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A+    +  V A AGSGKT +LV R+  L  + N+ P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAAT--RTNMLVLAGAGSGKTRVLVHRIAWLQSVENSSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIAQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGQKDEGLR 155


>gi|295095174|emb|CBK84264.1| ATP-dependent DNA helicase UvrD [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 724

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + AS    +  V A AGSGKT +LV R+  L  + N  P +++ 
Sbjct: 6   DVSYLLDSLNDKQRDAVAAS--RTNLLVLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMA 63

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 64  VTFTNKAAAEMRHRIAQLMGT--------------------------------------S 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 86  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 141

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 142 PPRQAMWYINGQKDEGLR 159


>gi|218288826|ref|ZP_03493077.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240915|gb|EED08092.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 613

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 20/183 (10%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP--STLLCLTHTKAA 74
           ++ ++ ++        +  VSA AGSGKT +L +R+  L   +       LL +T T+AA
Sbjct: 3   VNWSQEQEQAIRARGTNLVVSAGAGSGKTAVLAERIASLAEEDPKLRMDELLVMTFTEAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +   +   ++                 D +KAR     + +     ++ 
Sbjct: 63  AEEMRARIGRRLAERAAEWEKA---------------GDSAKARR-FRRLAQRVQDAQIS 106

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML--DNNEELKKAF 192
           TIH+FC ++++   +EA +   F +   E+   L+ EA ++TL       +    L+ A 
Sbjct: 107 TIHSFCLSLLRDHAVEAGLVPGFRVLSGEEDAVLLREAAQATLDEWSRHPERGAPLRDAL 166

Query: 193 YEI 195
             +
Sbjct: 167 SAL 169


>gi|229918202|ref|YP_002886848.1| recombination helicase AddA [Exiguobacterium sp. AT1b]
 gi|229469631|gb|ACQ71403.1| recombination helicase AddA [Exiguobacterium sp. AT1b]
          Length = 1205

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 81/223 (36%), Gaps = 34/223 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKA 73
           +  T  +            VSA AGSGKT +LV+R+   LL          +L +T T A
Sbjct: 3   VKWTNDQFAAIEARGSHVLVSAAAGSGKTAVLVERLSSRLLDETDELTADRMLVVTFTNA 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ + +                +     P    + K R +L   L       +
Sbjct: 63  AAAEMKRRIAKAL---------------EEALRDDPTNEYVRKQRQMLNRAL-------I 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+FC  ++++     ++   F IA+E     L ++  +  L       + +      
Sbjct: 101 TTIHSFCLEVIRENYYLLDLDPAFKIAEERDLVLLQDDVLEEVLEEEYGKQDTDFFALVD 160

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                  D +IE LI         L L  +  +       ++K
Sbjct: 161 AYTSDRGDSEIEDLI---------LGLYHYARTLPNPDAYLDK 194


>gi|223936289|ref|ZP_03628202.1| recombination helicase AddA [bacterium Ellin514]
 gi|223895151|gb|EEF61599.1| recombination helicase AddA [bacterium Ellin514]
          Length = 1211

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 33/229 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           +S T ++Q        +  V A AG+GKT  LV+R L  L+    P     +L +T T A
Sbjct: 1   MSFTPAQQEAIIARG-NVLVVAGAGTGKTRTLVERCLHCLVEEKPPTSLDEILMVTFTDA 59

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+   +        + L                           L       +
Sbjct: 60  AAAEMRQRIRARLEQELAKHTDDLR----------------------WTEQLTIFDTAHI 97

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+H+FC  +++Q   E  +     +  EE+++ L +E  ++ L S     + E  +A  
Sbjct: 98  GTLHSFCLQLVRQHFYELELDPQLTVLPEEEARLLADETLENLLQSHYA-GDAEGAEAVQ 156

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           +++++      +  I  ++     L+L  +  +       ++  L   A
Sbjct: 157 QLIQVQG-RGWDQPIRTLV-----LRLHHYTQTLRDPADWLKSQLEMFA 199


>gi|160945992|ref|ZP_02093218.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443723|gb|EDP20728.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1228

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 36/228 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T ++Q   +D   +  VSA AGSGKT +L +R ++L+    HP     LL +T 
Sbjct: 1   MSGPKWTPAQQAAIADRGGALLVSAAAGSGKTAVLTERAVQLITDPEHPVNADRLLIVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAE+  R+ + +   S L               +P  + + + R LL         
Sbjct: 61  TNAAAAELRARIGQALLHRSQL---------------QPGNAMLRRQRMLLQRAP----- 100

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TI AFC  ++ +     +I   FA AD    + L   A   TL +   D +     
Sbjct: 101 --ICTIDAFCLNLLHKHFQALDIPPDFAPADPGTVQLLRGAALAETLENAYRDPD----- 153

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            F    ++      +    D I     L++  F  +     + +++ L
Sbjct: 154 -FCAFADLYGKGRTDKPAGDAI-----LQIYDFLRALPDYDRKLDEFL 195


>gi|163748667|ref|ZP_02155920.1| DNA helicase II [Shewanella benthica KT99]
 gi|161331777|gb|EDQ02581.1| DNA helicase II [Shewanella benthica KT99]
          Length = 721

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++    ++ +   P  S  V A AGSGKT +L  R+  L+ +    P ++L 
Sbjct: 2   DVSSLLDGLND--EQRSVVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++  +                                       
Sbjct: 60  VTFTNKAAAEMRERVEKVSGS--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MGRMWIGTFHGLAHRLLRTHYKDANLPQTFQIIDSDDQLRLI----KRILKSLHLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D+ + 
Sbjct: 138 PPRQAQGYINGKKDQGLR 155


>gi|227514157|ref|ZP_03944206.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum
           ATCC 14931]
 gi|227087528|gb|EEI22840.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum
           ATCC 14931]
          Length = 1337

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 96/210 (45%), Gaps = 39/210 (18%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------AHPSTLLC 67
           + +K ++   +D  +   VSA+AGSGKT +LV+RV++L+              +   +L 
Sbjct: 4   TPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDILM 63

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA  M  R+   +   +   DE + A++ ++                       
Sbjct: 64  VTFTTDAAKNMRDRIRRRLVGAT---DEHMKAQVARL----------------------- 97

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                + TIH+FCE +++++    ++   F + D+ + + L E+A + TL   + + ++ 
Sbjct: 98  -ALANISTIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQVTLDDWVANPDQ- 155

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTA 217
              A +++++     ++E+++  + +   A
Sbjct: 156 -VGALHQLIDNFGAGNLESVVQALDTEADA 184


>gi|308062822|gb|ADO04710.1| putative recombination protein RecB [Helicobacter pylori Cuz20]
          Length = 949

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 90  -SHLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEA 142
             +L DE    +   I  +   K  ++       A+ +    L     +++ TI AF ++
Sbjct: 65  KENLEDEKEKEKSQNILKELEEKYHLNPSFVQNSAQEIYQRFLN--AEMRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           I+++F     ++++F +   E +K   ++   S L+++  +  EEL     + L   N
Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALNNEQLEELSVFITQCLSHDN 178


>gi|300173052|ref|YP_003772218.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811]
 gi|299887431|emb|CBL91399.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811]
          Length = 1242

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 82/219 (37%), Gaps = 27/219 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T ++Q    +   +  V+A+AGSGKT +L++R+++ +L+       L +T T AAA E
Sbjct: 4   TFTINQQRAVEETGHNILVAASAGSGKTTVLIERLIQKILSGTSVENFLIVTFTNAAAKE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   +      +D  +                    +  L   L       + TI 
Sbjct: 64  MRERLEAALEKRMKTADSQM--------------------KRFLQEQLLLLPAANISTID 103

Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           A+   +++ +     +   F +  D  +   L ++      AS   +++E        + 
Sbjct: 104 AYALRLIENYYHVIGLDPQFRLLSDTAERDLLRQDVLDEVFASFYEESHENHADFLALVT 163

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             S+  D   L       +  LKL  F  +       ++
Sbjct: 164 NFSSPSDDTQL------KQIVLKLADFAEARPDGDAWLQ 196


>gi|310643059|ref|YP_003947817.1| recombination helicase adda [Paenibacillus polymyxa SC2]
 gi|309248009|gb|ADO57576.1| Recombination helicase AddA [Paenibacillus polymyxa SC2]
          Length = 1339

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 32/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            +  +    S+   +  V+A AGSGKT +LV+R++R ++          LL  T TKAAA
Sbjct: 18  WSDDQWRAISESGNNMLVAAAAGSGKTAVLVERIIRKIVDPRLGFSVDRLLVATFTKAAA 77

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ E +                ++  ++P    + +   LL           + T
Sbjct: 78  AEMRQRIREAL---------------ERVLEQEPESEHVRRQLSLL-------NRASITT 115

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  ++++      +   F I +E +++ L +E  +         ++E     F  +
Sbjct: 116 LHSFCMEVIRRHYQAIPLDPGFRIMNEHETELLRQELLEELFEEKYEAHDE--GSTFRRL 173

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++  + E  +  +  ++      +L  F  S+ W    + +
Sbjct: 174 VDWFSGERTDDAMYVLVQ-----RLYDFSQSHPWPEHWLRE 209


>gi|218533282|ref|YP_002424097.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
 gi|218525585|gb|ACK86169.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
          Length = 1117

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 7/166 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            ++      L  +   RS  V A AGSGKT ++  RV  +L +   P ++  +T T+ AA
Sbjct: 7   GLADAAQRALAINAHDRSLLVEAGAGSGKTALMAGRVAMMLASGTAPGSIAAVTFTELAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +E+  RV E+          I      +++   PN   +S  R LL+   E    +   T
Sbjct: 67  SELLERVGEVTGRL------IEGQVPEEMRIALPNGLSVS-QRQLLVEAAEHLDEMACTT 119

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           IH FC+ +++ +P+EA+I     + DE ++  + ++ +   L   +
Sbjct: 120 IHGFCQRLVKPYPVEADIDPGARVVDEAEADGIFQDLRDGWLRECL 165


>gi|317181241|dbj|BAJ59027.1| helicase [Helicobacter pylori F32]
          Length = 938

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 15/188 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 90  -SHLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEA 142
             +L DE    +   I  +   K  +       +A+ +    L     +++ TI AF ++
Sbjct: 65  KENLEDEKEKEKSQNILKELEEKYRLDPSFVQNRAQEIYQRFLN--AEIRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199
           I+++F     + ++F +   E +K   ++  +S L+++  +  EEL     + L      
Sbjct: 123 ILRKFCWFVGLRANFEV--NEDTKAHQQQLNESFLSALDKEQLEELSVFITQCLSYDSYT 180

Query: 200 NDEDIETL 207
           +D  +E L
Sbjct: 181 SDSVLERL 188


>gi|326317369|ref|YP_004235041.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374205|gb|ADX46474.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1182

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 10/202 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+LE
Sbjct: 24  AIACDPARSVAVEACAGAGKTWMLVSRILRALLEGCEPHEILAITFTKKAAGEMRQRLLE 83

Query: 85  IITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + A+S      L  E+    I  ++  +   ++ + L + +L     ++++T H++  A
Sbjct: 84  WLEAFSRTPLPALRGELQARGIPAEQATEEACARLQGLFLQVLGAGRPVQIRTFHSWFAA 143

Query: 143 IMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           ++   PL       +  H+ + +++   + +       L  +  D    L   F + + +
Sbjct: 144 LLGTAPLAVLQSRGLPLHYELLEDD--AEAVRRVWPLFLQQVAADAG--LGGDFADSVSL 199

Query: 199 SNDEDIETLISDIISNRTALKL 220
                    +   +S R   +L
Sbjct: 200 HGRSQTRKALESALSKRVEFEL 221


>gi|212637392|ref|YP_002313917.1| DNA-dependent helicase II [Shewanella piezotolerans WP3]
 gi|212558876|gb|ACJ31330.1| DNA helicase II [Shewanella piezotolerans WP3]
          Length = 721

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P  +L 
Sbjct: 2   DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV ++                                          
Sbjct: 60  VTFTNKAAKEMRERVEKVAGG--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + + T H     +++    EAN+   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MSRMWIGTFHGLAHRLLRTHYKEANLPQSFQILDSDDQLRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D  + 
Sbjct: 138 PPRHAQGYINGKKDLGLR 155


>gi|296105303|ref|YP_003615449.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059762|gb|ADF64500.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 720

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + AS    +  V A AGSGKT +LV R+  L  + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQRDAVAAS--RTNLLVLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIAQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGQKDEGLR 155


>gi|257440573|ref|ZP_05616328.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257196896|gb|EEU95180.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 1233

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 36/223 (16%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T +++    D   +  VSA AGSGKT +L +R +RL+    HP     LL +T T AAA
Sbjct: 6   WTPAQRAAIEDRGGALLVSAAAGSGKTAVLTERAVRLITDPEHPVDADRLLIVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+ + +   S                 +P    + + R LL           + T
Sbjct: 66  AELRARIGQALLKRSQ---------------AEPGNGALRRQRMLLQRAP-------ICT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I AFC  ++++     +I   F+ AD    + L   A   TL +   D +      F   
Sbjct: 104 IDAFCLDLLRKHFQALDIPPDFSPADPGSVELLRASALSETLENAYRDPD------FCAF 157

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            ++      +    +     T L +  F  +     K +++ L
Sbjct: 158 ADLYGKGRTDRAAGE-----TILHVYDFLRALPDYDKKLDEFL 195


>gi|148212|gb|AAA67609.1| DNA helicase II [Escherichia coli str. K-12 substr. MG1655]
          Length = 720

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     ++    ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHXLAHRLLXAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINSQKDEGLR 155


>gi|291544540|emb|CBL17649.1| recombination helicase AddA, Firmicutes type [Ruminococcus sp.
           18P13]
          Length = 1187

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 26/202 (12%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
           + + T  +Q   +    S  VSA AGSGKT +LV+R++R L    HP   + L  +T T 
Sbjct: 1   MRNWTPEQQQAINARGASFLVSAAAGSGKTSVLVERLIRQLTDPEHPVSAARLAVVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R               L   +T+   + P    + + +  L          K
Sbjct: 61  DAAAEMKSR---------------LEHALTQCIAQDPRNVWLRQQQSQLQCA-------K 98

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KA 191
           + TIH+FC  +++    E +IT  F I +E +   ++       + +   D   +   + 
Sbjct: 99  ICTIHSFCFDLIRDHCAELDITPTFRILEETEMNMMVSRGLADIMEAWYADPARQGDMQL 158

Query: 192 FYEILEISNDEDIETLISDIIS 213
             +      D ++E L++++  
Sbjct: 159 LCDRFSGRTDAELENLLTELYR 180


>gi|261343070|ref|ZP_05970928.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316]
 gi|288314635|gb|EFC53573.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316]
          Length = 720

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A+    +  V A AGSGKT +LV R+  L  + N  P +++ 
Sbjct: 2   DVSYLLDSLNDKQRDAVAAT--RTNMLVLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 60  VTFTNKAAAEMRHRIAQLMGT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   ++AN+   F I D E   +L+    K  + ++ LD  + 
Sbjct: 82  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQAMWYINGQKDEGLR 155


>gi|307638220|gb|ADN80670.1| putative ATP-dependent helicase [Helicobacter pylori 908]
 gi|325996814|gb|ADZ52219.1| helicase [Helicobacter pylori 2018]
 gi|325998406|gb|ADZ50614.1| putative ATP-dependent helicase [Helicobacter pylori 2017]
          Length = 946

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 16/208 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A+ +    L     +++ TI AF ++I+
Sbjct: 65  KENLESGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           ++F     ++++F + ++ ++     +  +  L+++  +  EEL     + L        
Sbjct: 123 RKFCWFVGLSANFEVNEDTEAH--QRQLNEGFLSALNSEQLEELSVFIVQCLSY------ 174

Query: 205 ETLISDIISNRTALKLIFFFFSYLWRRK 232
           E+  SD I  R        +     +++
Sbjct: 175 ESYTSDSILERLRFLKNKLYLFDPNKKE 202


>gi|91228031|ref|ZP_01262116.1| DNA helicase II [Vibrio alginolyticus 12G01]
 gi|269964541|ref|ZP_06178780.1| DNA helicase II [Vibrio alginolyticus 40B]
 gi|91188260|gb|EAS74559.1| DNA helicase II [Vibrio alginolyticus 12G01]
 gi|269830668|gb|EEZ84888.1| DNA helicase II [Vibrio alginolyticus 40B]
          Length = 724

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        + G
Sbjct: 63  FTNKAAAEMRGRIEELMMG--------------------------------------SAG 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD  +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINGKKDEGLR 156


>gi|71279005|ref|YP_266848.1| DNA-dependent helicase II [Colwellia psychrerythraea 34H]
 gi|71144745|gb|AAZ25218.1| DNA helicase II [Colwellia psychrerythraea 34H]
          Length = 724

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + + + A  P ++  + A AGSGKT +LVQR+  L+ +      ++L 
Sbjct: 2   DVSELLDSLNDKQRDVVAA--PKQNMLILAGAGSGKTRVLVQRIAWLMQVEGISSHSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV ++                                          
Sbjct: 60  VTFTNKAAAEMRARVEQVTNG--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++    EAN+   F + D +   +LI+   +S    + LD  + 
Sbjct: 82  THGMWIGTFHGLAHRLLRMHFQEANLPQSFQVLDSDDQLRLIKRIVRS----LELDEKKW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K F   +    DE + 
Sbjct: 138 PPKQFVWYINGKKDEGLR 155


>gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
 gi|88187314|gb|ABD40311.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
          Length = 1149

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 27/203 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++ T  +    S    S  V+A AG+GKT +LV++ L L+         +L LT T  AA
Sbjct: 1   MAATPRQLEAISRHDVSMVVTAGAGTGKTFVLVEKYLNLVQDQGYRIRDVLALTFTDKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  RV + I        +                        +     E      V T
Sbjct: 61  AEMKERVRKTIAERLKDDPDN----------------------QVWKDAHEELVIAPVMT 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+FC  I+++F +EA +   F I DE Q+  +  EA ++ +        EE++++   +
Sbjct: 99  FHSFCAQILREFAIEAGLDPGFVILDEGQALAVEREAFETLIRK----PPEEIQESLIRL 154

Query: 196 LEISNDEDIETLISDIISNRTAL 218
           L       +  +++ +  N  A 
Sbjct: 155 LAQIEKFQVNQIMTTLAKNTDAF 177


>gi|308183694|ref|YP_003927821.1| putative recombination protein RecB [Helicobacter pylori PeCan4]
 gi|308065879|gb|ADO07771.1| putative recombination protein RecB [Helicobacter pylori PeCan4]
          Length = 945

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  ++       A+ +    L     +++ TI AF ++I+
Sbjct: 65  KENLENEKEKSQNILKELEEKYHLNPDLVQNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL---EISND 201
           ++F     ++++F +   E +K   ++  +  L+++  +  EEL     + L     ++D
Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNNEQLEELSVFIAQCLSHESYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SILERL 186


>gi|325847046|ref|ZP_08169872.1| putative ATP-dependent nuclease subunit A [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481018|gb|EGC84063.1| putative ATP-dependent nuclease subunit A [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1021

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 32/218 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAE 77
            T  ++       ++  VSA AGSGKT +LV RV+ L++    P   ++ +T T  A+ E
Sbjct: 6   PTDDQKKAIEIRDKNIIVSAAAGSGKTRVLVDRVVSLMIEEKIPIKNMIIVTFTNKASVE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ E ++    L DE + +   K Q K  N                      ++T+H
Sbjct: 66  MKDRIREKLSEL--LDDEKIDSSFVKKQIKAIND-------------------AFIKTLH 104

Query: 138 AFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           +FC  ++++    ++ ++  F IA + +   L ++A      +    N++E     +   
Sbjct: 105 SFCADMLRENFYLSDNLSPSFKIAADSKQALLRKDAIDELFENEYEKNDQEFIDFLHNFA 164

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +  +D+D + ++ D         L  F  S +     I
Sbjct: 165 KEKDDKDAKEIVLD---------LYDFSKSQVDPENWI 193


>gi|197334239|ref|YP_002154837.1| DNA helicase II [Vibrio fischeri MJ11]
 gi|197315729|gb|ACH65176.1| DNA helicase II [Vibrio fischeri MJ11]
          Length = 733

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ 
Sbjct: 2   DVSFLLDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ E++                                        +
Sbjct: 60  VTFTNKAAAEMRGRIEELMHG--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+   
Sbjct: 82  AGGMWNGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLL----KRLIKAQNLDDKNW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQAAWFINGKKDEGLR 155


>gi|225872585|ref|YP_002754040.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792506|gb|ACO32596.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 1201

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 24/240 (10%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLC 67
            SE   L    ++E+  A + TRS  V A AGSGKT +L +R L LL       P  +L 
Sbjct: 18  ASEMRPLHPVDQAERESAIEVTRSVLVQAPAGSGKTDLLTRRFLALLAEGHVEGPEQILA 77

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T+AA AEM  R+L+ +   +   ++    E  K+  +   ++           +LE 
Sbjct: 78  ITFTRAATAEMRARILKDLRDVASTDEQPGENERRKLARRALARARER-----GWPLLEQ 132

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P  L+V+TI + C  I    PL A +    +  D   +  L  EA + T+  +  D N+E
Sbjct: 133 PALLQVETIDSLCMRIAHGQPLLARLGGQLSPVD--DASALYLEAARRTIRHLGGD-NQE 189

Query: 188 LKKAFYEILEISNDE--DIETLISDIISNRTALKLIF------------FFFSYLWRRKI 233
           L  A   +L + +    D E L++D++  R   +  F            F+    +R ++
Sbjct: 190 LSAAIQHLLSLRDTHLGDCEQLMADMLRQRNGWQEHFPLAGDVDWEDVRFYLEQPFRDEV 249


>gi|167855351|ref|ZP_02478118.1| DNA-dependent helicase II [Haemophilus parasuis 29755]
 gi|167853499|gb|EDS24746.1| DNA-dependent helicase II [Haemophilus parasuis 29755]
          Length = 727

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 85/221 (38%), Gaps = 42/221 (19%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENIAESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR+   ++  S                                     
Sbjct: 60  VTFTNKAATEMRHRIEYTLSQSSD----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ V T H+    +++   L+AN+   F I D E  ++LI    K  L    LD  + 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDTEDQQRLI----KRLLKLHNLDEKQF 141

Query: 188 LKKAFYEILEISNDEDIE-TLISDIISNRTALKLIFFFFSY 227
             K     +    D+ +    +     +  + +L+ F+  Y
Sbjct: 142 PPKQVAWFINAQKDQGLRAKDLKQSHDDPHSQQLVKFYQIY 182


>gi|59710675|ref|YP_203451.1| DNA-dependent helicase II [Vibrio fischeri ES114]
 gi|59478776|gb|AAW84563.1| DNA-dependent ATPase I and helicase II [Vibrio fischeri ES114]
          Length = 733

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ 
Sbjct: 2   DVSFLLDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ E++                                        +
Sbjct: 60  VTFTNKAAAEMRGRIEELMHG--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+   
Sbjct: 82  AGGMWNGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLL----KRLIKAQNLDDKNW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQAAWFINGKKDEGLR 155


>gi|153834693|ref|ZP_01987360.1| DNA helicase II [Vibrio harveyi HY01]
 gi|148868889|gb|EDL67949.1| DNA helicase II [Vibrio harveyi HY01]
          Length = 723

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 4   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        + G
Sbjct: 62  FTNKAAAEMRGRIEELMMG--------------------------------------SAG 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD  +   
Sbjct: 84  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 139

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 140 RQVAWWINGKKDEGLR 155


>gi|212696888|ref|ZP_03305016.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676178|gb|EEB35785.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1021

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 32/218 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAE 77
            T  ++       ++  VSA AGSGKT +LV RV+ L++    P   ++ +T T  A+ E
Sbjct: 6   PTDDQKKAIEIRNKNIIVSAAAGSGKTRVLVDRVVSLMIEEKIPIKNMIIVTFTNKASVE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ E ++    L DE + +   K Q K  N                      ++T+H
Sbjct: 66  MKDRIREKLSEL--LDDEKIDSSFVKKQIKAIND-------------------AFIKTLH 104

Query: 138 AFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           +FC  ++++    ++ ++  F IA + +   L ++A      +    N++E     +   
Sbjct: 105 SFCADMLRENFYLSDNLSPSFKIAADSKQALLRKDAIDELFENEYEKNDQEFIDFLHNFA 164

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +  +D+D + ++ D+           F  S +     I
Sbjct: 165 KEKDDKDAKEIVLDL---------YDFSKSQVDPENWI 193


>gi|156972692|ref|YP_001443599.1| DNA-dependent helicase II [Vibrio harveyi ATCC BAA-1116]
 gi|156524286|gb|ABU69372.1| hypothetical protein VIBHAR_00351 [Vibrio harveyi ATCC BAA-1116]
          Length = 724

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        + G
Sbjct: 63  FTNKAAAEMRGRIEELMMG--------------------------------------SAG 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD  +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINGKKDEGLR 156


>gi|317178260|dbj|BAJ56049.1| helicase [Helicobacter pylori F16]
          Length = 947

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 10/176 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A+ +    L     +++ TI AF ++I+
Sbjct: 65  KENLENEKEKSQNILKELEEKYRLDPSFVQNNAQKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           ++F     ++++F +   E +K   ++  +S L+++     EEL     + L   +
Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAYQQQLNESFLSALNNKQLEELSVFIAQCLSYDS 176


>gi|27364389|ref|NP_759917.1| DNA-dependent helicase II [Vibrio vulnificus CMCP6]
 gi|37681375|ref|NP_935984.1| DNA-dependent helicase II [Vibrio vulnificus YJ016]
 gi|27360508|gb|AAO09444.1| DNA helicase II [Vibrio vulnificus CMCP6]
 gi|37200127|dbj|BAC95955.1| DNA helicase II [Vibrio vulnificus YJ016]
          Length = 724

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 48/229 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 63  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
           +     +    DE +     D   +   +T L+L   +     R  +++
Sbjct: 141 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 189


>gi|284006602|emb|CBA71863.1| DNA helicase II / ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 723

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
             S  ++ ++  + E + A  P  +  + A AGSGKT +LV R+  LL +    P +++ 
Sbjct: 5   NASYLLENLNDKQREAVAA--PRTNMLILAGAGSGKTRVLVHRIAWLLAVDKVSPFSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  ++ +                                       
Sbjct: 63  VTFTNKAAAEMRHRINALLGS--------------------------------------D 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++   L+AN+   F I D +   +L+    +  + +I LD ++ 
Sbjct: 85  QGGMWVGTFHGLAHRLLRAHYLDANLVQDFQILDSDDQYRLL----RRIIKAINLDESKW 140

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 141 PPRQAMWYINAKKDEGLR 158


>gi|153839103|ref|ZP_01991770.1| DNA helicase II [Vibrio parahaemolyticus AQ3810]
 gi|149747399|gb|EDM58363.1| DNA helicase II [Vibrio parahaemolyticus AQ3810]
          Length = 723

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 48/229 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 4   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 62  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD  +   
Sbjct: 84  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 139

Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
           +     +    DE +     D   +   +T L+L   +     R  +++
Sbjct: 140 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 188


>gi|54294699|ref|YP_127114.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens]
 gi|53754531|emb|CAH16015.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens]
          Length = 1076

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 6/217 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++  A+DP  S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA+EM  R
Sbjct: 7   EQRRQATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +++ +   +     + + + + +      K  + + +     +LE P  LK+ TI + C+
Sbjct: 67  IVQALHMAASNQPAVSAHQQSTL---NFAKQALQRNKQYQWDLLEQPNRLKIITIDSLCQ 123

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +I +  PL     ++  I++   S   I  A+     +I     +E  K     ++   +
Sbjct: 124 SINRAIPLLEKQVAYPDISETPDSHY-ISAARCCIQYAIATPEYQEAIKTLLLHVDNKQE 182

Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
             I+ L   ++S R       F  +   ++   E++L
Sbjct: 183 RLIQ-LFQTLLSQRDQWLPTLFL-AREQKKSTFEQAL 217


>gi|222110700|ref|YP_002552964.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221730144|gb|ACM32964.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 1101

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 9/201 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+ E
Sbjct: 24  AIACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQE 83

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            +  ++      L  E+  +  G +       + + L    L+    ++++T H++  A+
Sbjct: 84  WLQEFAAKPLPDLEKELIARGIGPQRALEKREQLQKLYRQTLDAGRPVQIRTFHSWFAAL 143

Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           +   PL       + +H+ + +++   + + E  +  LA++  D    L+  +   +   
Sbjct: 144 LGTAPLAVLEQQGLPAHYDLLEDD--AEAVREVWRPYLAAVAQD--AALRADYEACVAHH 199

Query: 200 NDEDIETLISDIISNRTALKL 220
                   +   ++ R    L
Sbjct: 200 GRSQTHKALEGALAKRVEFAL 220


>gi|297538865|ref|YP_003674634.1| Exodeoxyribonuclease V [Methylotenera sp. 301]
 gi|297258212|gb|ADI30057.1| Exodeoxyribonuclease V [Methylotenera sp. 301]
          Length = 1158

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 6/211 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
                T+DL       ++ A +   S  V A AG+GKT +L QR L+LL     P  ++ 
Sbjct: 6   NSDLSTLDLNQMDTLNRVRALE-LASFIVEAPAGAGKTELLTQRYLKLLATVNEPEEIIA 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  AAAEM +R+   + +  +  ++ + A   K++ ++   + + ++      I+  
Sbjct: 65  LTFTNKAAAEMRNRI---LLSLENAQNQTVEAAAHKLKTRELANAALLQSNVKSWDIINQ 121

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P  L++ TI A C ++ +Q PL +      A++D+  S  +  EA +  +A I+ +   +
Sbjct: 122 PSRLRILTIDALCSSLTRQMPLLSKFGGQPAVSDDTDSHYI--EASRRAIAHIVHETKPD 179

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTAL 218
                      +N E +  L++ +++ R   
Sbjct: 180 DTVIVALSYLDNNSEKLAELLAKMLARRDQW 210


>gi|328471315|gb|EGF42214.1| DNA-dependent helicase II [Vibrio parahaemolyticus 10329]
          Length = 723

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 48/229 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 4   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 62  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD  +   
Sbjct: 84  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 139

Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
           +     +    DE +     D   +   +T L+L   +     R  +++
Sbjct: 140 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 188


>gi|320157772|ref|YP_004190151.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O]
 gi|319933084|gb|ADV87948.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O]
          Length = 724

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 48/229 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++   S                                       
Sbjct: 63  FTNKAAAEMRGRIEELMMGSS--------------------------------------S 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
           +     +    DE +     D   +   +T L+L   +     R  +++
Sbjct: 141 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 189


>gi|209693834|ref|YP_002261762.1| DNA-dependent helicase II [Aliivibrio salmonicida LFI1238]
 gi|208007785|emb|CAQ77907.1| DNA helicase II UvrD [Aliivibrio salmonicida LFI1238]
          Length = 734

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ 
Sbjct: 2   DVSFLLDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ E++                                        +
Sbjct: 60  VTFTNKAAAEMRGRIEELMHG--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+   
Sbjct: 82  AGGMWNGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLL----KRLIKAQNLDDKNW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQAAWFINGKKDEGLR 155


>gi|297380712|gb|ADI35599.1| helicase [Helicobacter pylori v225d]
          Length = 949

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 15/188 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89
            +   + A+AGSGKT  L  R L LL   A+P+ +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPNEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 90  -SHLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEA 142
             +L DE    +   I  +   K  +S       A+ +    L     +++ TI AF ++
Sbjct: 65  KENLEDEKEKEKSQNILKELEEKYQLSPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN-- 200
           I+++F     ++++F +   E +K   ++   S L+++  +  EEL     + L   N  
Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALNNEQLEELSVFITQCLSYDNYT 180

Query: 201 -DEDIETL 207
            D  +E L
Sbjct: 181 SDSILERL 188


>gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
 gi|10175602|dbj|BAB06699.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
          Length = 1129

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 42/225 (18%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-------------NAHPS 63
           I+  + ++           +SA AGSGKT +L +R + +                 A   
Sbjct: 3   ITFNQEQEQAIFSRAPLVVLSAGAGSGKTRVLTERFVHICEQKWQETQNDLEASFGAEVD 62

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            L+ +T T+ AA EM  R+ + +     + +     +  ++   +  K  + +AR     
Sbjct: 63  ELVAITFTEKAAREMKERIRQRL--LEKVEEAKAHGDAGQMIFWQKQKEGLERAR----- 115

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                    + T H+FC+ ++ ++  EA I   F + DE ++  +  E         +  
Sbjct: 116 ---------ISTFHSFCQRLLLEYAQEAGIPPTFIVLDEVEAAIMKREILDDLFQDAL-- 164

Query: 184 NNEELKKAFYEILEISNDEDIETL-------ISDIISNRTALKLI 221
               L+  F ++LE      +E+        I DI ++    K +
Sbjct: 165 ----LRPLFAKLLECYTKRSLESSLLQVYEHIRDIHADDDVFKRL 205


>gi|254508570|ref|ZP_05120687.1| DNA helicase II [Vibrio parahaemolyticus 16]
 gi|219548512|gb|EED25520.1| DNA helicase II [Vibrio parahaemolyticus 16]
          Length = 723

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 48/229 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 4   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 62  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    +  + +  LD  +   
Sbjct: 84  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----RRLIKAQNLDEKQWPA 139

Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
           +     +    DE +     D   +   +T L+L   +     R  +++
Sbjct: 140 RQVSWWINGKKDEGLRPNHIDAYGDPITKTYLQLYTAYQEACDRAGLVD 188


>gi|210135718|ref|YP_002302157.1| putative recombination protein RecB [Helicobacter pylori P12]
 gi|210133686|gb|ACJ08677.1| ATP-dependent nuclease subunit A [Helicobacter pylori P12]
          Length = 946

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A  +    L     +++ TI AF ++I+
Sbjct: 65  KENLENEKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201
           ++F     ++++F +   E +K   ++  +  L+++  +  EEL     + L      +D
Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNGEQLEELSVFIAQCLSYDSYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SVLERL 186


>gi|88861280|ref|ZP_01135912.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2]
 gi|88816761|gb|EAR26584.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2]
          Length = 721

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ + NA P ++  
Sbjct: 2   DVSELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV E +                                        +
Sbjct: 60  VTFTNKAAKEMRSRVEETLKT--------------------------------------S 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     I++    EA++   F I D +   ++I    +  L ++ +D  + 
Sbjct: 82  AGGMWIGTFHGLAHRILRAHHREAHLPEAFQILDSDDQIRMI----RRLLKAMNIDEKKW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K     +    DE + 
Sbjct: 138 PPKQISWYISAKKDEALR 155


>gi|187477416|ref|YP_785440.1| nuclease/helicase [Bordetella avium 197N]
 gi|115422002|emb|CAJ48524.1| putative nuclease/helicase [Bordetella avium 197N]
          Length = 1107

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 15/221 (6%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           Q  +++L A DP  S  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM
Sbjct: 7   QDHAQRLRALDPQTSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RVLE +        E      +    +     D  +  H    +L+ P  L ++TI +
Sbjct: 67  HARVLEKLARAQGPEPEAAHERRSWRLARAALARDAERGWH----VLQHPARLAIRTIDS 122

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++  P  + +     IAD+         A     A   L   +E       +  +
Sbjct: 123 FCSGLVRGMPWLSGLGGMPDIADDA-------RACYEAAARATLALADEHDSVVSLLAHL 175

Query: 199 SND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
             D +  E  I+ +++ R     +    +Y   R+ +E++L
Sbjct: 176 DVDIQAAEQAIAGMLAQRDQWLPLL---AYGLDREGLEQAL 213


>gi|121594696|ref|YP_986592.1| UvrD/REP helicase [Acidovorax sp. JS42]
 gi|120606776|gb|ABM42516.1| UvrD/REP helicase [Acidovorax sp. JS42]
          Length = 1101

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 9/201 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R+LR LL    P  +L +T TK AA EM  R+ E
Sbjct: 24  AIACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQE 83

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            +  ++      L  E+  +  G +       + + L    L+    ++++T H++  A+
Sbjct: 84  WLQEFAAKPLPDLEKELIARGIGPQRALDKREQLQKLYRQTLDAGRPVQIRTFHSWFAAL 143

Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           +   PL       + +H+ + +++   + + E  +  LA++  D    L+  +   +   
Sbjct: 144 LGTAPLAVLEQQGLPAHYDLLEDD--AEAVREVWRPYLAAVAQD--AALRADYEACVAHH 199

Query: 200 NDEDIETLISDIISNRTALKL 220
                   +   ++ R    L
Sbjct: 200 GRSQTHKALEGALAKRVEFAL 220


>gi|330959506|gb|EGH59766.1| putative UvrD helicase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 1144

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 11/204 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                + LA DP RS  + A AGSGKT  L  R+L  L     P  +L +T T  AAAE+
Sbjct: 49  DDAEARALAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVDRPEEVLAITFTNMAAAEI 108

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV+  +   +   +  L+ E+ +    +  +  + + + +   +L  P  L++ T  +
Sbjct: 109 VERVIGALQQAATGIEPELAHELPQY---RLARLVLDRDKEMGWNLLLNPSRLRIMTFDS 165

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE-LKKAFYEILE 197
           FC ++  + P+ + +         + +  +  +A   TL S+  ++  E L  A   +L 
Sbjct: 166 FCASLASKTPIMSGLGGG---KTTDDASLIYRQAILETLKSVNDNDIPEGLSSALEAVLS 222

Query: 198 ISNDEDIETLI---SDIISNRTAL 218
            + +   E L+    +++  R   
Sbjct: 223 FAKNR-FEALVPLFENLLMKRDQW 245


>gi|317052675|ref|YP_004113791.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
 gi|316947759|gb|ADU67235.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
          Length = 1123

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 13/223 (5%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            ++ +  A D + S  V A AGSGKT +L QR L LL   + P  +L +T T+ A  EM 
Sbjct: 9   DEAARTRALDISTSFIVQAPAGSGKTELLTQRFLALLGQVSEPEEILAITFTRKAVGEMR 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV   + +     D    A        +  ++ ++ AR     +LE P  L++QTI A 
Sbjct: 69  ERV---LGSLRMALDAEPPAAPHLRTTWELARAALANARRQEWNLLEHPTRLRIQTIDAL 125

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C +I++Q P  + +    AI+DE    +L  +A   TL  +      E       +  + 
Sbjct: 126 CASIVRQIPYFSRLGGQMAISDEP--ARLYRQAAMQTLEEL------ECPHVRTVLTHLH 177

Query: 200 ND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           ND E    L+ +++  R    L     +    R  +E+SL  +
Sbjct: 178 NDMERACALLMEMLQRREQW-LHHIVAARKADRAALERSLAHV 219


>gi|260770702|ref|ZP_05879632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972]
 gi|260614283|gb|EEX39472.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972]
 gi|315178541|gb|ADT85455.1| DNA-dependent helicase II [Vibrio furnissii NCTC 11218]
          Length = 724

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++   S                                       
Sbjct: 63  FTNKAAAEMRGRIDELMMGSS--------------------------------------S 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVSWWINGKKDEGLR 156


>gi|269962274|ref|ZP_06176626.1| DNA helicase II [Vibrio harveyi 1DA3]
 gi|269832977|gb|EEZ87084.1| DNA helicase II [Vibrio harveyi 1DA3]
          Length = 724

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  + P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQSSPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        + G
Sbjct: 63  FTNKAAAEMRGRIEELMMG--------------------------------------SAG 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD  +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINGKKDEGLR 156


>gi|226942221|ref|YP_002797294.1| DNA-dependent helicase II [Azotobacter vinelandii DJ]
 gi|226717148|gb|ACO76319.1| DNA helicase II, UvrD [Azotobacter vinelandii DJ]
          Length = 726

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 45/199 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66
           ++ S  +  ++  + + + A  P     V A AGSGKT +LV R+  L+ + NA P  +L
Sbjct: 3   EDLSFLLSALNAAQRQAVTA--PLGPRLVLAGAGSGKTRVLVHRIAWLIEVENASPHAIL 60

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AAAEM  R+ +++                                        
Sbjct: 61  AVTFTNKAAAEMRTRIEQLLGT-------------------------------------- 82

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           +P G+ + T H     +++    EA +  +F I D +  ++L     K  +  + LD   
Sbjct: 83  SPMGMWIGTFHGLAHRLLRAHWQEAGLAENFQILDADDQQRL----VKRVIRELGLDEQR 138

Query: 187 ELKKAFYEILEISNDEDIE 205
              +     +    DE + 
Sbjct: 139 WPARQAQWFINAKKDEGLR 157


>gi|260425183|ref|ZP_05779176.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470]
 gi|260404424|gb|EEW97971.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470]
          Length = 1285

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 27/221 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKA 73
           ++ T ++Q       ++  +SA AGSGKT +L +R+ +L+     P+ +   L LT T+A
Sbjct: 4   MTWTTAQQAAIDARRQNLLLSAAAGSGKTAVLTERIKKLITDMDDPADITELLVLTFTRA 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +A EM  R+               S+ I K   +   + +   ARHL    L      ++
Sbjct: 64  SAGEMKTRI---------------SSGIAKALSEAEQERNTPLARHL-SRQLALMSSAQI 107

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+ +F + +++++    ++  +  +  +      +E+     L+ ++    E  + AF 
Sbjct: 108 STLDSFFQTLIRRYFYLIDLDPNTKMLTDSNEIYALEQ---DVLSEVLETYYERGEPAFL 164

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +  ++ +    ++   D     T L L  F  S  +    +
Sbjct: 165 DCADLLSGGFEDSGFKD-----TILSLYHFSCSMPFPEDWL 200


>gi|317013352|gb|ADU83960.1| putative recombination protein RecB [Helicobacter pylori
           Lithuania75]
          Length = 951

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A  +    L     +++ TI AF ++I+
Sbjct: 65  KENLESEKEKSQNILKELEEKYHLKPDLVRNSAPKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201
           ++F     ++++F +   E +K   ++   S L+++  +  E+L     + L      +D
Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALNGEQLEKLSVFIAQCLSYDSYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SILERL 186


>gi|28899787|ref|NP_799392.1| DNA-dependent helicase II [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362520|ref|ZP_05775446.1| DNA helicase II [Vibrio parahaemolyticus K5030]
 gi|260877200|ref|ZP_05889555.1| DNA helicase II [Vibrio parahaemolyticus AN-5034]
 gi|260897243|ref|ZP_05905739.1| DNA helicase II [Vibrio parahaemolyticus Peru-466]
 gi|260901376|ref|ZP_05909771.1| DNA helicase II [Vibrio parahaemolyticus AQ4037]
 gi|28808039|dbj|BAC61276.1| DNA helicase II [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088957|gb|EFO38652.1| DNA helicase II [Vibrio parahaemolyticus Peru-466]
 gi|308094142|gb|EFO43837.1| DNA helicase II [Vibrio parahaemolyticus AN-5034]
 gi|308107188|gb|EFO44728.1| DNA helicase II [Vibrio parahaemolyticus AQ4037]
 gi|308112661|gb|EFO50201.1| DNA helicase II [Vibrio parahaemolyticus K5030]
          Length = 724

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 48/229 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDDLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 63  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD  +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140

Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
           +     +    DE +     D   +   +T L+L   +     R  +++
Sbjct: 141 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 189


>gi|146343947|ref|YP_001201803.1| putative UvrD helicase [Pseudomonas fluorescens SBW25]
 gi|146187759|emb|CAM96087.1| putative UvrD helicase [Pseudomonas fluorescens SBW25]
          Length = 1121

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 11/201 (5%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             + LA DP RS  + A AGSGKT  L  R+L  L     P  +L +T T  AAAE+  R
Sbjct: 29  EARALAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVERPEEVLAITFTNMAAAEIVER 88

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V+  +   +   +  L  E+ +    +  +  + + + +   +L  P  L++ T  +FC 
Sbjct: 89  VIGALQQAATGIEPELVHELPQY---RLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCA 145

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISN 200
           ++  + P+ + +         + +  +  +A   TL S+  ++  E L  A   +L  + 
Sbjct: 146 SLASKTPIMSGLGGG---KTTDDASLIYRQAILETLKSVNDNDIPEALSNALEAVLSFAK 202

Query: 201 DEDIETLI---SDIISNRTAL 218
           +   E L+    +++  R   
Sbjct: 203 NR-FEALVPLFENLLMKRDQW 222


>gi|317014973|gb|ADU82409.1| putative recombination protein RecB [Helicobacter pylori
           Gambia94/24]
          Length = 946

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 15/187 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A+ +    L     +++ TI AF ++I+
Sbjct: 65  KENLENEKEKSQNILKELEEKYHLDPSLVQNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKS-TLASIMLDNNEELKKAFYEILEISN--- 200
           ++F     ++++F + ++ ++    +       L+++  +  EEL     + L   N   
Sbjct: 123 RKFCWFVGLSANFEVNEDTEA---YQACLNEGFLSALNSEQLEELSAFIVQCLSYENYTS 179

Query: 201 DEDIETL 207
           D  +E L
Sbjct: 180 DSILERL 186


>gi|254230196|ref|ZP_04923589.1| DNA helicase II [Vibrio sp. Ex25]
 gi|262392860|ref|YP_003284714.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25]
 gi|151937281|gb|EDN56146.1| DNA helicase II [Vibrio sp. Ex25]
 gi|262336454|gb|ACY50249.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25]
          Length = 724

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 63  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD  +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVSWWINGKKDEGLR 156


>gi|260775103|ref|ZP_05884002.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609020|gb|EEX35180.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 723

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 4   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 62  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    +  + +  LD  +   
Sbjct: 84  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDTDDQQRLL----RRLIKAQNLDEKQWPA 139

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 140 RQVSWWINGKKDEGLR 155


>gi|54297724|ref|YP_124093.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris]
 gi|53751509|emb|CAH12927.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris]
          Length = 1076

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 5/203 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++  A+DP  S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA+EM  R
Sbjct: 7   EQRSQATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +++ +   +     + + + + +      K  + + +     +LE P  LK+ TI + C+
Sbjct: 67  IVQALHMAASNQPAVSAHQQSTL---NFAKQALQRNKQYQWDLLEQPNRLKIITIDSLCQ 123

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +I +  PL     ++  I++   S   I  A+     +I     +E  K     ++   +
Sbjct: 124 SINRAIPLLEKQVAYPDISETPDSHY-ISAARCCIQYAIATPEYQEAIKTLLLHVDNKQE 182

Query: 202 EDIETLISDIISNRTALKLIFFF 224
             I+ L   ++S R       F 
Sbjct: 183 RLIQ-LFQALLSQRDQWLPTLFL 204


>gi|256544667|ref|ZP_05472039.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399556|gb|EEU13161.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 1139

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 88/229 (38%), Gaps = 32/229 (13%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLL 66
            + S  +     T  ++       ++  VSA AGSGKT +LV R++ ++L    P   ++
Sbjct: 3   LKRSNQMSKFKPTDDQKKAIETRGKNIIVSAAAGSGKTRVLVDRLVSIMLEEKIPIKNMI 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  A+ EM  R+ + +       +                       +  +   ++
Sbjct: 63  IVTFTNKASVEMKDRIRQKLNELMKEGNSD---------------------KIFIKNQIK 101

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           +     ++T+H+FC  ++++    ++ ++  F IA + +   L ++A           N+
Sbjct: 102 SINDAFIKTLHSFCADMLRENFYLSDNLSPSFKIAADSKQALLRKDAIDELFEDEYEKND 161

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                  +      +D+D + +I D+           F  S +   + +
Sbjct: 162 SNFINFLHNFASSKDDKDAKNIILDL---------YDFSKSQINPHQWL 201


>gi|298737172|ref|YP_003729702.1| putative ATP-dependent helicase [Helicobacter pylori B8]
 gi|298356366|emb|CBI67238.1| putative ATP-dependent helicase [Helicobacter pylori B8]
          Length = 945

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A  +    L     +++ TI AF ++I+
Sbjct: 65  KENLENEKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLN--AEVRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201
           ++F     ++++F +   E +K    +  +  L+++  +  EEL     + L      +D
Sbjct: 123 RKFCWFVGLSANFEV--NEDTKVHQRQLNEGFLSALNNEQLEELSAFIVQCLSYDSYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SILERL 186


>gi|109946901|ref|YP_664129.1| putative recombination protein RecB [Helicobacter acinonychis str.
           Sheeba]
 gi|109714122|emb|CAJ99130.1| ATP-dependent nuclease subunit A [Helicobacter acinonychis str.
           Sheeba]
          Length = 966

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMVLKASAGSGKTFALSVRFLALLFEGANPSEILTLTFTKKATAEMEGRILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIM 144
             S E    +   I  +   K D+        A+ +    L     +K+ TI AF ++I+
Sbjct: 65  KESSESEKEKSQNILKELEEKYDLNPSLVQDNAKKIYQRFLN--AEIKISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED- 203
           ++F     ++++F + ++ Q+    ++  +S L+++  +  +EL     + L   N  D 
Sbjct: 123 RKFCWFVGLSANFEVNEDTQAY--QQQLSESFLSALDSEQLKELSVFVAQCLSDENRSDS 180

Query: 204 -IETL 207
            +E L
Sbjct: 181 VLEQL 185


>gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille]
 gi|151281175|gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 1083

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 3/195 (1%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A DP+RS  V A AGSGKT +LV RVLRLLLA   P+ +L +T T+ AA EM  R+++
Sbjct: 20  ARACDPSRSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAILAITFTRKAAQEMRERLMQ 79

Query: 85  IITAWSHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           ++   +   D E+L+    +   ++     + +AR L   +L +P  L + T H++   +
Sbjct: 80  LLHELTLKPDAEVLALLRERGIAEQALAETLPQARGLYEQVLRSPQALSIDTFHSWFARL 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +Q  PL + +   +++   E + +L+ +A    +  +   + + +K A  ++     D  
Sbjct: 140 IQIAPLASGVPHGYSLT--EATGELLSDAYSRFMQQVNEKDQQHVKDALVDLYTQVGDFS 197

Query: 204 IETLISDIISNRTAL 218
              L++  ++ R   
Sbjct: 198 TRNLLNSFVAKRAEW 212


>gi|255526102|ref|ZP_05393024.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296185823|ref|ZP_06854230.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|255510218|gb|EET86536.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296049651|gb|EFG89078.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
          Length = 1112

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 20/162 (12%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +  I     EQ  A D T++  VSA AGSGKT +L  R LRLL        +  +T T+ 
Sbjct: 1   MSSIFGLSEEQEKAVDITKNIAVSAGAGSGKTRVLTNRYLRLLEGGLQIEEIAAITFTEK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ + I      SD                       +   +  L+      +
Sbjct: 61  AALEMKERIRKAINEKISSSDFDH--------------------KKQWMKHLDKLNRANI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            TIH FC  I+++      +   F+I D       + EA ++
Sbjct: 101 STIHGFCSNIVRENAAFLGVDFSFSIIDGIDKAMFLREASQN 142


>gi|227810114|ref|ZP_03989027.1| UvrD/REP helicase [Acidaminococcus sp. D21]
 gi|226904694|gb|EEH90612.1| UvrD/REP helicase [Acidaminococcus sp. D21]
          Length = 611

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 21/166 (12%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           + +   TK + L  +   R+  VSA AGSGKT +LV+R L +L   +   + +L +T T+
Sbjct: 1   MQMADFTKEQTLAITTLDRNVSVSAGAGSGKTRVLVERFLTILKDPDKSANRILAITFTR 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ + +      +   L                    R      L    G  
Sbjct: 61  KAAREMRERIRKSLLEEVGKTSGEL--------------------RAHFEEQLRHLDGAP 100

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           + TI  FC  I++  P+EA +   F + +E + K+       + L 
Sbjct: 101 ITTIDGFCSQILRDHPVEAGMDPQFTVKEEYEVKEFQASVIDAFLR 146


>gi|325982026|ref|YP_004294428.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
 gi|325531545|gb|ADZ26266.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
          Length = 738

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 79/220 (35%), Gaps = 51/220 (23%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+S    +QL A   P +S  V A AGSGKT +L  R+  L+ +    PS +L +T T  
Sbjct: 4   LLSDLNPQQLEAITLPHQSVLVLAGAGSGKTRVLTTRIAYLIQSGQVSPSGILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                         P G+ +
Sbjct: 64  AAKEMLARITAMLPI--------------------------------------NPRGMWI 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D      LI    K  L  +  D+ +   +   
Sbjct: 86  GTFHGLCHRMLRSHYQDAGLPQAFQILDSADQLALI----KRILKDLSADDKKFPPRQVQ 141

Query: 194 EILEISNDEDIETLI---SDIISNRTALKLIFFFFSYLWR 230
             +  + +  +        D+ S      ++ F+ +Y  R
Sbjct: 142 WFINNAKESGLRAAYVTPDDVFSRH----MLEFYQAYEQR 177


>gi|260220997|emb|CBA29121.1| hypothetical protein Csp_A10560 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1131

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 9/201 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R++R LL  A P  +L +T TK AA EM  R+ +
Sbjct: 33  AIACDPRRSVAVEACAGAGKTWMLVSRMVRALLDGAAPHEILAITFTKKAAGEMRERLYD 92

Query: 85  IITAWSHLSDEILSAEIT-KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            + +++   D  L  E+  +     P    ++K R L   +L     ++V+T H++  A+
Sbjct: 93  WLRSYARADDSTLRRELQLRGVQGDPGAEQLAKLRSLHEALLLAGRPVQVRTFHSWFAAL 152

Query: 144 MQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           ++  PL    +  + + + + + +   K I +  +     I  D     +  + E + + 
Sbjct: 153 LRSAPLGMLHQLGLPTQYELLEND--AKAIAQVWRRFHTRIAQD--AAARADYLEAVGVY 208

Query: 200 NDEDIETLISDIISNRTALKL 220
                   +   I  RT   L
Sbjct: 209 GRHGTLKALEAAIHKRTEFAL 229


>gi|312881427|ref|ZP_07741222.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370909|gb|EFP98366.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 724

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +  ID +++ +   + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   NALIDGLNEKQRAAVAA--PIENLLVLAGAGSGKTRVLVHRIAWLMSVEEASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 63  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    +  + +  LD  +   
Sbjct: 85  GMWNGTFHGLCHRILRAHYLDAKLPEDFQIIDSDDQQRLL----RRLIKAQNLDEKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVSWWINGKKDEGLR 156


>gi|167771642|ref|ZP_02443695.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM
           17241]
 gi|167666282|gb|EDS10412.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM
           17241]
          Length = 1174

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 37/225 (16%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +    +    +  VSA AGSGKT +LV+RV+  +L   +P     LL +T + AAA
Sbjct: 6   WTPQQADAIAARGGTVLVSAAAGSGKTAVLVERVVGRILDEKNPVDADRLLIVTFSNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R++  ++       E       ++                        G  ++ T
Sbjct: 66  LEMKQRIMARMSELIAAHPEDRRLRRQQLLL----------------------GRAQIST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++       I S+   ADE + + +  +  ++ +   + D+ +       E+
Sbjct: 104 IHSFCLELIRSNFQALGIASNTRAADERELEIMRRDCARACIEQFLSDDADGGFSQLVEL 163

Query: 196 LEISNDED--IETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           L    D+    +TL            L  F  ++ +    ++  L
Sbjct: 164 LSAGRDDRRVFDTL----------FSLYDFVRAHPFYNDWLDDKL 198


>gi|323494180|ref|ZP_08099295.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546]
 gi|323311574|gb|EGA64723.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546]
          Length = 723

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 4   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 62  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    +  + +  LD  +   
Sbjct: 84  GMWNGTFHGICHRILRAHYLDAQLPEDFQIIDSDDQQRLL----RRLIKAQNLDEKQWPA 139

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 140 RQVGWWINGKKDEGLR 155


>gi|319778427|ref|YP_004129340.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9]
 gi|317108451|gb|ADU91197.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9]
          Length = 1109

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I+  + ++ LA D ++S  V A AGSGKT IL  R+L LL     P  +L +T TK AA+
Sbjct: 5   IAADQKQRDLALDSSKSYIVQAPAGSGKTEILSTRILSLLCVVEKPEQILAITFTKKAAS 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV E +   S+   E    +++     +     + + +     ILE     +++TI
Sbjct: 65  EMLDRVYEKLLNHSNPEPESEFEKLS----WELANKVIQRDKEKNWKILENLDRFRIRTI 120

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            +F + ++   PL + + +     +  +S  L  EA    +      ++    +   + L
Sbjct: 121 DSFTKNLISNTPLISGVGAGVEFTENAES--LFHEAVDLMIEEY---DDHPFLRQVLDHL 175

Query: 197 EISNDEDIETLISDIISNRTALKLI 221
           ++  D     L+  ++  R   + +
Sbjct: 176 DMDFD-GFRRLMIQMLHKRLNWQDL 199


>gi|77461864|ref|YP_351371.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf0-1]
 gi|77385867|gb|ABA77380.1| DNA helicase II [Pseudomonas fluorescens Pf0-1]
          Length = 727

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   + P     V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 75  RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA ++  F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLSQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|330505760|ref|YP_004382629.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01]
 gi|328920046|gb|AEB60877.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01]
          Length = 727

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 74/199 (37%), Gaps = 44/199 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           Q   E + L S   ++    + P     V A AGSGKT +LV R+  L+ A  A P ++L
Sbjct: 2   QNDPELL-LASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAIGASPHSIL 60

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AAAEM HR+ +++                                        
Sbjct: 61  SVTFTNKAAAEMRHRIEQMLG--------------------------------------H 82

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            P G+ V T H     +++    EA +  +F I D +  ++LI    K  +  + LD   
Sbjct: 83  NPAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDSDDQQRLI----KRVIRELGLDEQR 138

Query: 187 ELKKAFYEILEISNDEDIE 205
              K     +    DE   
Sbjct: 139 WPAKQAQWFINGQKDEGFR 157


>gi|295095005|emb|CBK84096.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Coprococcus sp.
           ART55/1]
          Length = 1280

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 99/241 (41%), Gaps = 37/241 (15%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---------LAN 59
           +  +T + I  T  +  +      +  VSA AGSGKT +LV+R++ ++         +  
Sbjct: 3   KDMKTDNGIKWTDQQAHVIDTRHGNLLVSAAAGSGKTAVLVERIIEMVAGRNSRGDRIEG 62

Query: 60  AHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + P     LL +T T AAAA+M  ++ +            L  +I ++  K      + K
Sbjct: 63  SEPVSVDELLVVTFTNAAAAQMKEKIGQ-----------ALQKKIDEMMAKGEYDEHLIK 111

Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              L+           + TI +FC  I++++     +   F IAD+ + K +  +     
Sbjct: 112 QMTLI-------NHADICTIDSFCLRIVKEYFARVELDCAFGIADDTEMKIIKHDVMDQV 164

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +     D  E +   F  ++      + ++ + DI+      ++I    SY   +K + +
Sbjct: 165 MEMCYED--ESVVPGFDRLIMTFARNESDSAVPDIVE-----RIIKVISSYPEPKKWLAQ 217

Query: 237 S 237
           +
Sbjct: 218 A 218


>gi|89074458|ref|ZP_01160935.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
 gi|89049746|gb|EAR55296.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
          Length = 723

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ 
Sbjct: 2   DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ E++   S                                     
Sbjct: 60  VTFTNKAAAEMRGRINELMHGSS------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+   T H  C  +++   L+A +   F I D +   +L+    +  + +  LD    
Sbjct: 83  -AGMWNGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQAAWYINAKKDEGLR 155


>gi|260774493|ref|ZP_05883407.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP
           69.14]
 gi|260610620|gb|EEX35825.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP
           69.14]
          Length = 718

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 45/194 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T T
Sbjct: 1   MLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLISVEQASPFSVMSVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+ E++                                        +  G+
Sbjct: 59  NKAAAEMRGRIEELMQG--------------------------------------SASGM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              T H  C  I++   L+AN+   F I D E   +L+    +  + +  LD  +   K 
Sbjct: 81  WNGTFHGICHRILRAHYLDANLPEDFQILDSEDQLRLL----RRLIKAQNLDEKQWPAKQ 136

Query: 192 FYEILEISNDEDIE 205
               +    DE + 
Sbjct: 137 VCWWVNGKKDEGLR 150


>gi|330444888|ref|ZP_08308543.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489198|dbj|GAA03040.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 723

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ 
Sbjct: 2   DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ E++   S                                     
Sbjct: 60  VTFTNKAAAEMRGRINELMQGSS------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+   T H  C  +++   L+A +   F I D +   +L+    +  + +  LD    
Sbjct: 83  -AGMWNGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQAAWYINAKKDEGLR 155


>gi|170017499|ref|YP_001728418.1| ATP-dependent exoDNAse beta subunit [Leuconostoc citreum KM20]
 gi|251764532|sp|B1MZM2|ADDA_LEUCK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|169804356|gb|ACA82974.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Leuconostoc citreum
           KM20]
          Length = 1236

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 85/218 (38%), Gaps = 25/218 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T ++Q    +   +  V+A+AGSGKT +L++R+++ +L+       L +T T AAA EM
Sbjct: 5   FTINQQRAVEETGHNILVAASAGSGKTTVLIERLIQKILSGISVENFLIVTFTNAAAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   I      +++ +                    +  L   L       + TI A
Sbjct: 65  RERLEIAIEKRLRDANDGM--------------------KRFLQEQLLLLPAANISTIDA 104

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           +   +++ +     +   F +  +   + ++ +    T+     D      + F  ++  
Sbjct: 105 YALRLIENYYHVIGLDPQFRLLSDTAERDMMRQDVLDTVFEAFYDETHPQHENFIALVNN 164

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             + + +  +   +     LKL  F  +    ++ +++
Sbjct: 165 FGNPNQDDALRQAV-----LKLSDFAEARPDGQQWLKE 197


>gi|217033850|ref|ZP_03439275.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10]
 gi|216943748|gb|EEC23191.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10]
          Length = 938

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 15/188 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 90  -SHLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEA 142
             +L DE    +   I  +   K  +       +A+ +    L     +++ TI AF ++
Sbjct: 65  KENLEDEKEKEKSQNILKELEEKYRLDPSFVQNRAQEIYQRFLN--AEIRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199
           I+++F     ++++F +   E +K   ++   S L+++  +  EEL     + L      
Sbjct: 123 ILRKFCWFVGLSANFEV--NEYTKAHQQQLNASFLSALNNEQLEELSVFITQCLSYDSYT 180

Query: 200 NDEDIETL 207
           +D  +E L
Sbjct: 181 SDSILERL 188


>gi|15646160|ref|NP_208344.1| putative recombination protein RecB [Helicobacter pylori 26695]
 gi|2314736|gb|AAD08593.1| helicase [Helicobacter pylori 26695]
          Length = 945

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A  +    L     +++ TI AF ++I+
Sbjct: 65  QENLENEKEKSQNILKELEEKYHLDPSLVQNSAPKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201
           ++F     ++++F +   E +K   ++  +  L+++  +  E L     + L      +D
Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNGEQLEALSVFIAQCLSYDSYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SILERL 186


>gi|292493733|ref|YP_003529172.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
 gi|291582328|gb|ADE16785.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
          Length = 715

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
           + S  ++ +++ + E + A  P     V A AGSGKT +LV R+  L+      P +LL 
Sbjct: 2   DISYLLNPLNKAQREAVAA--PAGHHLVLAGAGSGKTRVLVHRIAWLIRSQGISPFSLLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ E++   +                                     
Sbjct: 60  VTFTNKAAGEMRGRIEELLGMPA------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++    EA +   F I D E   +LI    +  L ++ LD    
Sbjct: 83  -GGMWMGTFHGLAHRLLRTHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLDETRW 137

Query: 188 LKKAFYEILEISNDEDIE-TLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
             +     +    DE +    + D  +   R  +++   + S+  R  +++
Sbjct: 138 PPRQAQWFINGRKDEGLRPQHLEDDGNPYLRQQIRIYHSYQSHCERSGLVD 188


>gi|83589346|ref|YP_429355.1| DNA helicase/exodeoxyribonuclease V, subunit A [Moorella
           thermoacetica ATCC 39073]
 gi|123525008|sp|Q2RL77|ADDA_MOOTA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|83572260|gb|ABC18812.1| DNA helicase/exodeoxyribonuclease V, subunit A [Moorella
           thermoacetica ATCC 39073]
          Length = 1405

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 33/221 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  +         +  V+A AG+GKT +LV+R+++ L     P     LL +T T+AAA
Sbjct: 9   WTPDQLAAIRARRANILVAAAAGAGKTAVLVERIIQRLTDPEDPVSLENLLVVTFTEAAA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+   + A      E  +     +   +                        + T
Sbjct: 69  AEMRQRIGAALEAAVARDPENEALRRQLLLLNR----------------------AHIST 106

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++ +    ++   F + D  +   +  E     L        +       ++
Sbjct: 107 IHSFCLWVLRTYFYRLDLDPGFRVMDPAEVDLMQLEVMDRVLEEAFAAEPDGGP--VTDL 164

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +         L+ D++     L++  F  S  W    +E+
Sbjct: 165 ADSLGGRGDANLV-DLV-----LRVWEFSRSLPWPEAWLEQ 199


>gi|309805609|ref|ZP_07699651.1| ATP-dependent deoxyribonuclease subunit A domain protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165047|gb|EFO67288.1| ATP-dependent deoxyribonuclease subunit A domain protein
           [Lactobacillus iners LactinV 09V1-c]
          Length = 144

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 22/156 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S TK ++    D      VSA+AGSGKT +LV+RV+  +L +     LL +T TKAAA
Sbjct: 1   MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+   I        + L                       L   L       + T
Sbjct: 61  SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           I +FC  ++++F    N+  +F+I  ++    L++E
Sbjct: 99  IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKE 134


>gi|157960297|ref|YP_001500331.1| DNA-dependent helicase II [Shewanella pealeana ATCC 700345]
 gi|157845297|gb|ABV85796.1| DNA helicase II [Shewanella pealeana ATCC 700345]
          Length = 721

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P  +L 
Sbjct: 2   DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV ++                                          
Sbjct: 60  VTFTNKAAKEMRERVEKVAGG--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MSRMWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQLRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D  + 
Sbjct: 138 PPRQAQGYINGKKDLGLR 155


>gi|188528332|ref|YP_001911019.1| putative recombination protein RecB [Helicobacter pylori Shi470]
 gi|188144572|gb|ACD48989.1| helicase [Helicobacter pylori Shi470]
          Length = 949

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI-- 62

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK-----------ARHLLITILETPGGLKVQTIHAF 139
            L  E L +E  K + +   K    K           A+ +    L     +++ TI AF
Sbjct: 63  -LQKENLESEKEKEKSQNILKELEEKYRLNPSLVQNSAQKIYQRFLN--AEMRISTIDAF 119

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            ++I+++F     ++++F +   E +K   ++   S L+++  +  EEL     + L   
Sbjct: 120 FQSILRKFCWFVGLSANFEV--NEDTKVHQQQLNASFLSALNNEQLEELSVFITQCLSHD 177

Query: 200 N---DEDIETL 207
           N   D  +E L
Sbjct: 178 NYTSDSILERL 188


>gi|289207283|ref|YP_003459349.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288942914|gb|ADC70613.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 735

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P +   V A AGSGKT +LV R+  L+ +    P +LL 
Sbjct: 2   DVSPLLDSLNPAQREAVAA--PPQPLLVLAGAGSGKTRVLVHRIAWLIGVEGVAPHSLLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+  ++   +                                     
Sbjct: 60  VTFTNKAAAEMRGRIEALLGHPAT------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             GL V T H     +++Q   +A +   F I D +   ++     K  L  + LD    
Sbjct: 84  --GLWVGTFHGLAHRLLRQHWQDARLPQGFQILDSDDQLRM----VKRVLRGLELDEARW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K     +    DE   
Sbjct: 138 PPKQAQWYINARKDEGAR 155


>gi|21666114|gb|AAM73563.1| DNA helicase II [Escherichia coli]
          Length = 133

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 43/175 (24%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 1   PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ V T H     +++   
Sbjct: 61  --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++AN+   F I D E   +L+    K  + ++ LD  +   +     +    DE 
Sbjct: 83  MDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEG 133


>gi|90581055|ref|ZP_01236855.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
 gi|90437751|gb|EAS62942.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
          Length = 723

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  LL +  A P +++ 
Sbjct: 2   DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ E++   S                                     
Sbjct: 60  VTFTNKAAAEMRGRINELMHGSS------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+   T H  C  +++   L+A +   F I D +   +L+    +  + +  LD    
Sbjct: 83  -AGMWNGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PARQAAWYINAKKDEGLR 155


>gi|21666098|gb|AAM73555.1| DNA helicase II [Escherichia coli]
 gi|21666100|gb|AAM73556.1| DNA helicase II [Escherichia coli]
 gi|21666102|gb|AAM73557.1| DNA helicase II [Escherichia coli]
 gi|21666104|gb|AAM73558.1| DNA helicase II [Escherichia coli]
 gi|21666106|gb|AAM73559.1| DNA helicase II [Escherichia coli]
 gi|21666108|gb|AAM73560.1| DNA helicase II [Escherichia coli]
 gi|21666110|gb|AAM73561.1| DNA helicase II [Escherichia coli]
 gi|21666112|gb|AAM73562.1| DNA helicase II [Escherichia coli]
 gi|21666116|gb|AAM73564.1| DNA helicase II [Escherichia coli]
 gi|21666118|gb|AAM73565.1| DNA helicase II [Escherichia coli]
 gi|21666120|gb|AAM73566.1| DNA helicase II [Escherichia coli]
 gi|21666122|gb|AAM73567.1| DNA helicase II [Escherichia coli]
 gi|21666124|gb|AAM73568.1| DNA helicase II [Escherichia coli]
 gi|21666126|gb|AAM73569.1| DNA helicase II [Escherichia coli]
 gi|21666128|gb|AAM73570.1| DNA helicase II [Escherichia coli]
 gi|21666130|gb|AAM73571.1| DNA helicase II [Escherichia coli]
 gi|21666132|gb|AAM73572.1| DNA helicase II [Escherichia coli]
 gi|21666134|gb|AAM73573.1| DNA helicase II [Escherichia coli]
 gi|21666136|gb|AAM73574.1| DNA helicase II [Escherichia coli]
 gi|21666138|gb|AAM73575.1| DNA helicase II [Escherichia coli]
 gi|21666140|gb|AAM73576.1| DNA helicase II [Escherichia coli]
 gi|21666142|gb|AAM73577.1| DNA helicase II [Escherichia coli]
 gi|21666144|gb|AAM73578.1| DNA helicase II [Escherichia coli]
 gi|21666146|gb|AAM73579.1| DNA helicase II [Escherichia coli]
 gi|21666148|gb|AAM73580.1| DNA helicase II [Escherichia coli]
 gi|21666150|gb|AAM73581.1| DNA helicase II [Escherichia coli]
 gi|21666152|gb|AAM73582.1| DNA helicase II [Escherichia coli]
 gi|21666154|gb|AAM73583.1| DNA helicase II [Escherichia coli]
 gi|21666156|gb|AAM73584.1| DNA helicase II [Escherichia coli]
 gi|21666159|gb|AAM73585.1| DNA helicase II [Escherichia coli]
 gi|21666161|gb|AAM73586.1| DNA helicase II [Escherichia coli]
 gi|21666163|gb|AAM73587.1| DNA helicase II [Escherichia coli]
 gi|21666165|gb|AAM73588.1| DNA helicase II [Escherichia coli]
 gi|21666167|gb|AAM73589.1| DNA helicase II [Escherichia coli]
 gi|21666169|gb|AAM73590.1| DNA helicase II [Escherichia coli]
 gi|21666171|gb|AAM73591.1| DNA helicase II [Escherichia coli]
 gi|21666173|gb|AAM73592.1| DNA helicase II [Escherichia coli]
 gi|21666175|gb|AAM73593.1| DNA helicase II [Escherichia coli]
 gi|21666177|gb|AAM73594.1| DNA helicase II [Escherichia coli]
 gi|21666179|gb|AAM73595.1| DNA helicase II [Escherichia coli]
 gi|21666181|gb|AAM73596.1| DNA helicase II [Escherichia coli]
 gi|21666183|gb|AAM73597.1| DNA helicase II [Escherichia coli]
 gi|21666185|gb|AAM73598.1| DNA helicase II [Escherichia coli]
 gi|21666187|gb|AAM73599.1| DNA helicase II [Escherichia coli]
 gi|21666189|gb|AAM73600.1| DNA helicase II [Escherichia coli]
 gi|21666191|gb|AAM73601.1| DNA helicase II [Escherichia coli]
 gi|21666193|gb|AAM73602.1| DNA helicase II [Escherichia coli]
 gi|21666195|gb|AAM73603.1| DNA helicase II [Escherichia coli]
 gi|21666197|gb|AAM73604.1| DNA helicase II [Escherichia coli]
 gi|21666199|gb|AAM73605.1| DNA helicase II [Escherichia coli]
 gi|21666202|gb|AAM73606.1| DNA helicase II [Escherichia coli]
 gi|21666204|gb|AAM73607.1| DNA helicase II [Escherichia coli]
 gi|21666206|gb|AAM73608.1| DNA helicase II [Escherichia coli]
 gi|21666208|gb|AAM73609.1| DNA helicase II [Escherichia coli]
 gi|21666211|gb|AAM73610.1| DNA helicase II [Escherichia coli]
 gi|21666213|gb|AAM73611.1| DNA helicase II [Escherichia coli]
 gi|21666215|gb|AAM73612.1| DNA helicase II [Escherichia coli]
 gi|21666217|gb|AAM73613.1| DNA helicase II [Escherichia coli]
 gi|21666219|gb|AAM73614.1| DNA helicase II [Escherichia coli]
 gi|21666223|gb|AAM73616.1| DNA helicase II [Escherichia coli]
 gi|21666225|gb|AAM73617.1| DNA helicase II [Escherichia coli]
 gi|21666227|gb|AAM73618.1| DNA helicase II [Escherichia coli]
 gi|21666229|gb|AAM73619.1| DNA helicase II [Escherichia coli]
 gi|21666231|gb|AAM73620.1| DNA helicase II [Escherichia coli]
 gi|21666233|gb|AAM73621.1| DNA helicase II [Escherichia coli]
 gi|21666236|gb|AAM73622.1| DNA helicase II [Escherichia coli]
 gi|21666238|gb|AAM73623.1| DNA helicase II [Escherichia coli]
 gi|21666240|gb|AAM73624.1| DNA helicase II [Escherichia coli]
 gi|21666242|gb|AAM73625.1| DNA helicase II [Escherichia coli]
 gi|21666244|gb|AAM73626.1| DNA helicase II [Escherichia coli]
          Length = 133

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 43/175 (24%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 1   PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ V T H     +++   
Sbjct: 61  --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++AN+   F I D E   +L+    K  + ++ LD  +   +     +    DE 
Sbjct: 83  MDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEG 133


>gi|56461651|ref|YP_156932.1| DNA-dependent helicase II [Idiomarina loihiensis L2TR]
 gi|56180661|gb|AAV83383.1| Superfamily I DNA helicase, UvrD [Idiomarina loihiensis L2TR]
          Length = 723

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L    + +Q   S       V A AGSGKT +LV R+  L+      P ++L +T T  A
Sbjct: 7   LADLNERQQQAVSATDGHMLVLAGAGSGKTRVLVHRIAWLIQERQYSPFSILAVTFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++ +                                         G+ + 
Sbjct: 67  AAEMRGRVEQLVGSSVR--------------------------------------GMWIG 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     +++   ++  +  +F I D +  ++LI    K  + S+ LD+     K    
Sbjct: 89  TFHGLAHRLLRAHYMDVGLPQNFQIIDSDDQQRLI----KRLIKSLNLDDKRWPAKQAQW 144

Query: 195 ILEISNDEDIE 205
            +    DE + 
Sbjct: 145 YINGKKDEGLR 155


>gi|293392075|ref|ZP_06636409.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952609|gb|EFE02728.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 724

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 42/220 (19%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2   DFAELLDGLNDKQREAVSA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +++  +                           + L       
Sbjct: 60  VTFTNKAAAEMRHRIESVLSDGN---------------------------QRLF------ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ V T H+    +++   L+A++   F I D E   +LI+   K  L +    +   
Sbjct: 87  --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQLRLIKRLMK--LHNFEEKSFPP 142

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
            +  +Y  +    DE +     D  ++R   + I  +  Y
Sbjct: 143 KQACWY--INNKKDEGLRPNHIDDHNDRQEQEWIKIYQIY 180


>gi|268607993|ref|ZP_06141724.1| recombination helicase AddA [Ruminococcus flavefaciens FD-1]
          Length = 1213

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKA 73
           ++ T+ +Q   S    S  VSA AGSGKT +L +R+++L+           ++ +T T  
Sbjct: 1   MAWTEQQQNAISARGSSVIVSAAAGSGKTAVLTERLVQLMADPESGVRADRIVVVTFTND 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+E+  R               L  ++  +  + P+   + + + LL +        K+
Sbjct: 61  AASELKKR---------------LDMKLRALISEDPSNGHLLRQQTLLQSA-------KI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI++FC  +++    +  IT+ F + DE  +  L   A       +  D  +++    Y
Sbjct: 99  STINSFCFDLIRDNISDQGITTGFGVLDESDNTVLKARAMDELFEEMSRDEYDKIS-FLY 157

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +   I N++ +  +IS +           F  S   R K ++
Sbjct: 158 DKFCIRNEKRLREVISLMDG---------FLASVSLREKWLD 190


>gi|52842039|ref|YP_095838.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148359358|ref|YP_001250565.1| ATP-dependent DNA helicase [Legionella pneumophila str. Corby]
 gi|296107405|ref|YP_003619105.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila 2300/99 Alcoy]
 gi|52629150|gb|AAU27891.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148281131|gb|ABQ55219.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila str. Corby]
 gi|295649306|gb|ADG25153.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610513|emb|CBX00098.1| hypothetical protein LPW_18431 [Legionella pneumophila 130b]
          Length = 1076

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 5/203 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++  A+DP  S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA+EM  R
Sbjct: 7   EQRSQATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +++ +   +     + + + + +      K  + +       +LE P  LK+ TI + C+
Sbjct: 67  IVQALHMAASNQPAVSAHQQSTL---NFAKQALQRNNQYQWDLLEQPNRLKIITIDSLCQ 123

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +I +  PL     ++  I++   S   I  A+     +I     +E  K     ++   +
Sbjct: 124 SINRAIPLLEKQVAYPDISETPDSHY-ISAARCCIQYAIATPEYQEAIKTLLLHVDNKQE 182

Query: 202 EDIETLISDIISNRTALKLIFFF 224
             I+ L   ++S R       F 
Sbjct: 183 RLIQ-LFQALLSQRDQWLPTLFL 204


>gi|207092619|ref|ZP_03240406.1| ATP-dependent nuclease [Helicobacter pylori HPKX_438_AG0C1]
          Length = 210

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  +        A+ +    L     +++ TI AF ++I+
Sbjct: 65  KENLESEKEKSQNILKELEEKYHLKPDLVRNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---D 201
           ++F     ++++F +   E +K   ++  +  L+++  +  EEL     + L   N   D
Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNGEQLEELSVFIAQCLSYDNYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SILERL 186


>gi|300115039|ref|YP_003761614.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
 gi|299540976|gb|ADJ29293.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
          Length = 717

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
           + S  ++ +++ + E   A  P     V A AGSGKT +LV R+  L+      P  LL 
Sbjct: 2   DISSLLNPLNKAQREAAAA--PPGHHLVLAGAGSGKTRVLVHRMAWLIRSQGIAPVNLLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ E++   +                                     
Sbjct: 60  VTFTNKAAGEMRGRIEELLETPA------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++    EA +   F I D E   +LI    +  L ++ LD +  
Sbjct: 83  -GGMWVGTFHGIAHRLLRAHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLDESRW 137

Query: 188 LKKAFYEILEISNDEDIE-TLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
             +     +    D+ +    + +  +   R  +++   + S+  R  +++
Sbjct: 138 PPRQAQWFINSHKDKGLRPQYLEEGTNPHVRQQIRIYHDYQSHCERSGLVD 188


>gi|289422630|ref|ZP_06424472.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius
           653-L]
 gi|289156981|gb|EFD05604.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius
           653-L]
          Length = 1375

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 34/226 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            TK ++ +      +  V+A AGSGKT +L++R++RL+L   +P     LL +T TKAAA
Sbjct: 5   WTKDQESVIRHRNANLLVAAAAGSGKTAVLIERIIRLILDPVNPVDIDRLLVVTFTKAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV                  I K     P+ + + + R LL           + T
Sbjct: 65  REMRERV---------------GLAIEKELALDPDNTRLQRQRMLL-------NKADITT 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC ++M+      ++     I D  + + L  E  +        + +E+    F  +
Sbjct: 103 IDSFCNSVMRTNFHVIDLDPSVRIGDTAEIEILRNETIEDFFEKKYQEADEK----FLNL 158

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           ++  N    +  + D++       +  F  S  +    ++++    
Sbjct: 159 VDTYNTRTNDNNLIDLV-----FTISNFVDSTPYPDLWLDEAAERF 199


>gi|167622483|ref|YP_001672777.1| DNA-dependent helicase II [Shewanella halifaxensis HAW-EB4]
 gi|167352505|gb|ABZ75118.1| DNA helicase II [Shewanella halifaxensis HAW-EB4]
          Length = 721

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  S  V A AGSGKT +L  R+  L+ +    P  +L 
Sbjct: 2   DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV ++                                          
Sbjct: 60  VTFTNKAAKEMRERVEKVAGG--------------------------------------N 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + + T H     +++    +AN+   F I D +   +LI    K  L S+ LD  + 
Sbjct: 82  MSRMWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQLRLI----KRILKSLNLDEKQY 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    D  + 
Sbjct: 138 PPRQAQGYINGKKDLGLR 155


>gi|160902562|ref|YP_001568143.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
 gi|160360206|gb|ABX31820.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
          Length = 1065

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 19/200 (9%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----PSTLLCLTHTKAAAAEMSHRV 82
             DP R+ ++SA+AG+GKT+IL Q  +++L  N         +L +T T  AA+EM +R+
Sbjct: 12  IDDPNRNFFISASAGTGKTYILTQYFIKVLEKNFPNADIVDNILTVTFTNKAASEMKNRI 71

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           +E ++          ++++   Q     K ++S++               ++TI +FC  
Sbjct: 72  MEEVSNKLDKKPPYGASKLEWYQYWNEVKINLSRS--------------WIKTIDSFCSR 117

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           I+++  +   +  +F+I  + Q  + +E +  S L  + L+  ++ +  +   L     E
Sbjct: 118 IIRENNISVGVDPNFSIISDFQRDREVERSVYSALR-VALEIYQDKEIDWLNFLSTKRKE 176

Query: 203 DIETLISDIISNRTALKLIF 222
            IE  +  +   +T  K  F
Sbjct: 177 KIEKYVEALNEEKTKFKETF 196


>gi|317010231|gb|ADU80811.1| putative recombination protein RecB [Helicobacter pylori India7]
          Length = 948

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144
             + E    +   I  +   K  ++       A  +    L     +++ TI AF ++I+
Sbjct: 65  KENLESEKEKSQNILKELEEKYRLNPSFVQNSAPKIYQRFLN--AEIRISTIDAFFQSIL 122

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201
           ++F     ++++F +   E +K   ++  +S L+++  +  EEL     + L      +D
Sbjct: 123 RKFCWFVGLSANFEV--NENTKAHQQQLNESFLSALNGEQLEELSVFIAQCLSYDSYTSD 180

Query: 202 EDIETL 207
             +E L
Sbjct: 181 SILERL 186


>gi|52425423|ref|YP_088560.1| DNA-dependent helicase II [Mannheimia succiniciproducens MBEL55E]
 gi|52307475|gb|AAU37975.1| UvrD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 727

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 3   DISELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEGISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+   ++  S                          +R L       
Sbjct: 61  VTFTNKAAAEMRQRIESTLSQHS--------------------------SRRLF------ 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ V T H+    +++   L+AN+   F I D E  
Sbjct: 89  --GMWVGTFHSIAHRLLRAHYLDANLPQDFQILDSEDQ 124


>gi|323499636|ref|ZP_08104604.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326]
 gi|323315237|gb|EGA68280.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326]
          Length = 723

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 48/229 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 4   SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        +  
Sbjct: 62  FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +   +L+    +  + +  LD  +   
Sbjct: 84  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDTDDQVRLL----RRLIKAQNLDEKQWPA 139

Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
           K     +    DE +     D   +   +T L+L   +     R  +++
Sbjct: 140 KQVAWWINGKKDEGLRPNHIDAFHDPITKTYLQLYTAYQEACDRAGLVD 188


>gi|119468303|ref|ZP_01611429.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium
           TW-7]
 gi|119448296|gb|EAW29560.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium
           TW-7]
          Length = 721

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ +  A   ++  
Sbjct: 2   DVSELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV E + A                                       
Sbjct: 60  VTFTNKAAKEMRTRVEETLKAPV------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     I++    EAN+   F I D +   ++I    K  L S+ +D+ + 
Sbjct: 83  -GGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K F   +    DE + 
Sbjct: 138 PAKQFGWYISAKKDEALR 155


>gi|315125235|ref|YP_004067238.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913]
 gi|315013748|gb|ADT67086.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913]
          Length = 721

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ +  A   ++  
Sbjct: 2   DVSELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV E + A                                       
Sbjct: 60  VTFTNKAAKEMRSRVEETLKAPV------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     I++    EAN+   F I D +   ++I    K  L S+ +D+ + 
Sbjct: 83  -GGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K F   +    DE + 
Sbjct: 138 PAKQFGWYISAKKDEALR 155


>gi|60117407|gb|AAX14460.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila mojavensis]
          Length = 208

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 92/175 (52%), Gaps = 33/175 (18%)

Query: 7   FQEHSETIDLISQTKSEQLL----ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           F  +    +L++  K   LL    A +P  S WV+A+AG+GKT IL+ RVLRLLL N   
Sbjct: 35  FLHYMYNANLVNFYKVLALLMRSNAINPNFSVWVNASAGTGKTKILIDRVLRLLLENK-- 92

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ----------------- 105
             +LCLT T AAA EM +R+  I++ W+  SD +L+A++ ++                  
Sbjct: 93  RNILCLTFTNAAANEMENRIHSILSKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPY 152

Query: 106 --------GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                   G + NK  +++AR L   +     GL +QTIHAFC  ++  FP+EA 
Sbjct: 153 LSSQCVTLGSRKNKDYLTRARRLFSELENL--GLTIQTIHAFCYKLISSFPIEAG 205


>gi|262172714|ref|ZP_06040392.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451]
 gi|261893790|gb|EEY39776.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|261213182|ref|ZP_05927465.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341]
 gi|260837600|gb|EEX64294.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|121587578|ref|ZP_01677344.1| DNA helicase II [Vibrio cholerae 2740-80]
 gi|229527306|ref|ZP_04416699.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)]
 gi|121548216|gb|EAX58286.1| DNA helicase II [Vibrio cholerae 2740-80]
 gi|229335314|gb|EEO00798.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|15640220|ref|NP_229847.1| DNA-dependent helicase II [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121728028|ref|ZP_01681067.1| DNA helicase II [Vibrio cholerae V52]
 gi|147675309|ref|YP_001218450.1| DNA-dependent helicase II [Vibrio cholerae O395]
 gi|153818562|ref|ZP_01971229.1| DNA helicase II [Vibrio cholerae NCTC 8457]
 gi|153821587|ref|ZP_01974254.1| DNA helicase II [Vibrio cholerae B33]
 gi|229507007|ref|ZP_04396515.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286]
 gi|229509377|ref|ZP_04398860.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33]
 gi|229516324|ref|ZP_04405772.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9]
 gi|229606515|ref|YP_002877163.1| DNA-dependent helicase II [Vibrio cholerae MJ-1236]
 gi|254226330|ref|ZP_04919920.1| DNA helicase II [Vibrio cholerae V51]
 gi|254851318|ref|ZP_05240668.1| DNA-dependent helicase II [Vibrio cholerae MO10]
 gi|255744002|ref|ZP_05417956.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101]
 gi|262153639|ref|ZP_06028766.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1]
 gi|262167390|ref|ZP_06035098.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27]
 gi|9654595|gb|AAF93366.1| DNA helicase II [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121629731|gb|EAX62150.1| DNA helicase II [Vibrio cholerae V52]
 gi|125621135|gb|EAZ49479.1| DNA helicase II [Vibrio cholerae V51]
 gi|126510901|gb|EAZ73495.1| DNA helicase II [Vibrio cholerae NCTC 8457]
 gi|126520874|gb|EAZ78097.1| DNA helicase II [Vibrio cholerae B33]
 gi|146317192|gb|ABQ21731.1| DNA helicase II [Vibrio cholerae O395]
 gi|227012037|gb|ACP08247.1| DNA helicase II [Vibrio cholerae O395]
 gi|229346750|gb|EEO11720.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9]
 gi|229353692|gb|EEO18629.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33]
 gi|229356112|gb|EEO21031.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286]
 gi|229369170|gb|ACQ59593.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae MJ-1236]
 gi|254847023|gb|EET25437.1| DNA-dependent helicase II [Vibrio cholerae MO10]
 gi|255738267|gb|EET93658.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101]
 gi|262024192|gb|EEY42885.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27]
 gi|262030580|gb|EEY49217.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|262404930|ref|ZP_06081482.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586]
 gi|262348769|gb|EEY97910.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|258625863|ref|ZP_05720738.1| DNA helicase II [Vibrio mimicus VM603]
 gi|262163724|ref|ZP_06031464.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223]
 gi|258581827|gb|EEW06701.1| DNA helicase II [Vibrio mimicus VM603]
 gi|262027704|gb|EEY46369.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|153825962|ref|ZP_01978629.1| DNA helicase II [Vibrio cholerae MZO-2]
 gi|149740370|gb|EDM54506.1| DNA helicase II [Vibrio cholerae MZO-2]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|254291625|ref|ZP_04962414.1| DNA helicase II [Vibrio cholerae AM-19226]
 gi|150422482|gb|EDN14440.1| DNA helicase II [Vibrio cholerae AM-19226]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|153216919|ref|ZP_01950683.1| DNA helicase II [Vibrio cholerae 1587]
 gi|153830867|ref|ZP_01983534.1| DNA helicase II [Vibrio cholerae 623-39]
 gi|227080412|ref|YP_002808963.1| DNA helicase II [Vibrio cholerae M66-2]
 gi|229512494|ref|ZP_04401966.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21]
 gi|262191258|ref|ZP_06049454.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
 gi|298500833|ref|ZP_07010635.1| DNA helicase II [Vibrio cholerae MAK 757]
 gi|124114039|gb|EAY32859.1| DNA helicase II [Vibrio cholerae 1587]
 gi|148873656|gb|EDL71791.1| DNA helicase II [Vibrio cholerae 623-39]
 gi|227008300|gb|ACP04512.1| DNA helicase II [Vibrio cholerae M66-2]
 gi|229350493|gb|EEO15441.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21]
 gi|262032863|gb|EEY51405.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
 gi|297540337|gb|EFH76396.1| DNA helicase II [Vibrio cholerae MAK 757]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|153800815|ref|ZP_01955401.1| DNA helicase II [Vibrio cholerae MZO-3]
 gi|229521109|ref|ZP_04410530.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80]
 gi|124123646|gb|EAY42389.1| DNA helicase II [Vibrio cholerae MZO-3]
 gi|229341994|gb|EEO06995.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80]
 gi|327483072|gb|AEA77479.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae LMA3894-4]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|229524854|ref|ZP_04414259.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis
           VL426]
 gi|229338435|gb|EEO03452.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis
           VL426]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|261250055|ref|ZP_05942632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891]
 gi|260939559|gb|EEX95544.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 48/229 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +A V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 4   SLLLDGLNDKQREAVAA--PLENALVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ EI+                                        +  
Sbjct: 62  FTNKAAAEMRGRIEEIMMG--------------------------------------SAS 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +   +L+    +  + +  LD  +   
Sbjct: 84  GMWNGTFHGICHRILRAHYLDATLPEDFQIIDTDDQVRLL----RRLIKAQNLDEKQWPA 139

Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
           K     +    DE +     D   +   +T L+L   +     R  +++
Sbjct: 140 KQVAWWINGKKDEGLRPNHIDAYGDPITKTYLQLYSAYQEACDRAGLVD 188


>gi|297581630|ref|ZP_06943552.1| DNA helicase II [Vibrio cholerae RC385]
 gi|297534037|gb|EFH72876.1| DNA helicase II [Vibrio cholerae RC385]
          Length = 723

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|322383647|ref|ZP_08057398.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151859|gb|EFX44802.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 1350

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 32/206 (15%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWS 90
             ++A AGSGKT +LV+R++R +     P     LL  T TKAAA+EM  R+ E +    
Sbjct: 1   MLIAAAAGSGKTAVLVERIIRRISDEREPVDVDRLLVATFTKAAASEMKERIREAL---- 56

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                       K   K+P    + +   L+       G   + T+H+FC  ++++    
Sbjct: 57  -----------EKELLKRPQSPHLRRQLALM-------GRANITTLHSFCLDVIRRHFAS 98

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
            ++   F I+ E +++ + ++  +  +     ++ E+    F+++++    E  ++ +  
Sbjct: 99  IHLDPVFRISGETETELMRQDVLEELMEEYYENSAED--SPFWKLVDSFGGEHSDSGLVR 156

Query: 211 IISNRTALKLIFFFFSYLWRRKIIEK 236
           ++      KL     S+ W    +++
Sbjct: 157 LVQ-----KLYDESRSHPWPDYWLKE 177


>gi|297616711|ref|YP_003701870.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144548|gb|ADI01305.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM
           12680]
          Length = 1250

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           ++  + +  +    +    +  VSA AG+GKT +LV R++  L    +P   + LL +T+
Sbjct: 1   MENSAWSSEQLDAINWRGGNLLVSAAAGTGKTAVLVGRIMGHLKDPVNPIDINRLLVVTY 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+                AE+     + P    + +   LL         
Sbjct: 61  TNAAAAEMRERIR---------------AELASEISRNPESMHLRRQMILL-------ND 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T+H+FC  ++++      +   F +ADE +++      +   L +++ +       
Sbjct: 99  ACIATMHSFCLDVVREHFYMVGLDPAFRLADETEAEL----LQLEVLEALLEEKYAGGDA 154

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +F+ ++++   E  +  + +++     LKL  F  S       + +
Sbjct: 155 SFFALVDLYGGERDDEGLKELV-----LKLFRFSRSLPCPGDWLRQ 195


>gi|163803195|ref|ZP_02197077.1| DNA helicase II [Vibrio sp. AND4]
 gi|159173016|gb|EDP57850.1| DNA helicase II [Vibrio sp. AND4]
          Length = 724

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D +++ + E + A  P  +  V A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNEKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        + G
Sbjct: 63  FTNKAAAEMRGRIEELMMG--------------------------------------STG 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAQNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINAKKDEGLR 156


>gi|109900377|ref|YP_663632.1| DNA helicase II [Pseudoalteromonas atlantica T6c]
 gi|109702658|gb|ABG42578.1| DNA helicase II [Pseudoalteromonas atlantica T6c]
          Length = 724

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 45/220 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + + +    P     + A AGSGKT +LV R+  L+ +    P  +L 
Sbjct: 2   DVSRLLEQLNDKQRDAVA--SPAADMLILAGAGSGKTRVLVHRIAWLMEVEGIAPWGILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ E+  +                                       
Sbjct: 60  VTFTNKAAREMRGRIEELQGS--------------------------------------A 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + + T H     +++    EA +  +F I D +   +L     +  + S+ LD  + 
Sbjct: 82  LSNMWIGTFHGIAHRLLRTHYAEAKLPENFQILDSDDQYRL----VRRVIKSMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +  + DE +     D   +    KL   +  Y
Sbjct: 138 APKHVQWYINGNKDEGLRPEHIDTHGDYNQKKLCEIYQVY 177


>gi|253996791|ref|YP_003048855.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253983470|gb|ACT48328.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 1118

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           EH+   + ++     +L A D   S  V A AG+GKT +L QR L+LL     P  ++ +
Sbjct: 4   EHTSAAEALALDAQNRLRALD-LASFIVEAPAGAGKTELLTQRYLKLLQTVNAPEEIIAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AAAEM  R+L+ +        + + A+  K    + +   + +++     ++E P
Sbjct: 63  TFTNKAAAEMRLRILDSL---LKADSKEMPAQPHKQITYELSLKALQQSKQKNWQLIENP 119

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             L++ TI + C  + +Q PL +   +   +     +  L  +A +  LA +    + +L
Sbjct: 120 SRLRIFTIDSLCAHLARQMPLMSRFGAQPQVT--TDAGVLYAQAAEQALALVNGTEHSDL 177

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTAL 218
            K     ++  +++ ++ L+  ++  R   
Sbjct: 178 VKTALRYVDNDSNQ-LKNLLVKMLEKRDQW 206


>gi|261868383|ref|YP_003256305.1| DNA-dependent helicase II [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413715|gb|ACX83086.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 724

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 42/220 (19%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2   DFAELLDGLNDKQREAVSA--PLGNYLVLAGAGSGKTRVLTNRIAWLIGVEGISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +++  +                           + L       
Sbjct: 60  VTFTNKAAAEMRHRIESVLSDGN---------------------------QRLF------ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ V T H+    +++   L+A++   F I D E   +LI+   K  L S    +   
Sbjct: 87  --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQLRLIKRLMK--LHSFDEKSFPP 142

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
            +  +Y  +    DE +     D  ++R   + I  +  Y
Sbjct: 143 KQACWY--INNKKDEGLRPNQIDDHNDRQEREWIKIYQIY 180


>gi|295696731|ref|YP_003589969.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912]
 gi|295412333|gb|ADG06825.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912]
          Length = 1259

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 79/195 (40%), Gaps = 42/195 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------------------ 57
           ++  T+ +    +       V+A AGSGKT +L +R   +L                   
Sbjct: 1   MLRPTEDQWRAITAIRSDVVVTAGAGSGKTWVLTERYAAMLNGRPTLPPPEETDAPIPTG 60

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           A   P  ++ +T T+AAAA+M  ++   +       +  L     +++            
Sbjct: 61  APCRPGEIIAITFTEAAAADMRRKIRARLRQLIEAGETRLLPYEEELETAP--------- 111

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
                          + TIH++C ++++++P EA +   F + DE ++++L+ E+ +  L
Sbjct: 112 ---------------ISTIHSYCASLIRRYPFEAGVDPDFVVLDEPEARRLLRESAQEAL 156

Query: 178 ASIMLDNNEELKKAF 192
              + +    ++ A 
Sbjct: 157 MEALKEEEPAVRSAL 171


>gi|68536650|ref|YP_251355.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
 gi|68264249|emb|CAI37737.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
          Length = 830

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 75/235 (31%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L+     +Q  A +   S   + A AGSGKT +L +R+  LL     P  +L +T T  A
Sbjct: 13  LLEGLNPQQRQAVEHMGSPLLIVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTNKA 72

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV++++   +                                        + V 
Sbjct: 73  AAEMRERVMDMVGPQAE--------------------------------------RMWVS 94

Query: 135 TIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKL----IEEAKKST------------- 176
           T H+FC  +++     A  + ++F+I D + SK+L    I++A                 
Sbjct: 95  TFHSFCVRVLRANAHLAPGLNTNFSIYDSDDSKRLMTMIIKDASLDLKEFSPRGVLNVIS 154

Query: 177 ------------LASIMLDNNEE------LKKAFYEILEISNDEDIETLISDIIS 213
                       L     D+N        L K +   L  +N  D + LI ++++
Sbjct: 155 NWKNELVGPVGALEEAQRDSNPHTAQIATLYKTYQNRLRAANAVDFDDLIGEVVA 209


>gi|313115007|ref|ZP_07800500.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622698|gb|EFQ06160.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 1240

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 36/223 (16%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T +++    D   +  VSA AGSGKT +L +R +RL+    HP     LL +T T AAA
Sbjct: 6   WTPAQRAAIEDRGGALLVSAAAGSGKTAVLTERAVRLITDPDHPVDADKLLIVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+ + +   S                ++P+ + + + R LL           + T
Sbjct: 66  AELRARIGQALLRLSQ---------------QQPHNTSLRRQRMLLQRAP-------ICT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I AFC  ++ +     +I   FA AD    + L   A   TL +   D +     AF ++
Sbjct: 104 IDAFCLDLLHKHFQALDIPPDFAPADPGSVEVLRASALAETLENAYRDPD---FCAFADL 160

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFF------FSYLWRRK 232
                    +   + I+     L+ +  +      +   W+R+
Sbjct: 161 --YGKGRTDQAAGNTILHVYDFLRALPDYDRRLDEYLTPWQRE 201


>gi|192360051|ref|YP_001984019.1| DNA-dependent helicase II [Cellvibrio japonicus Ueda107]
 gi|190686216|gb|ACE83894.1| DNA helicase II [Cellvibrio japonicus Ueda107]
          Length = 769

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 35/201 (17%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           +F + S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +    P +
Sbjct: 27  AFMDVSHLLDNLNDAQREAVSA--PAGNQLILAGAGSGKTRVLVHRIAWLIQVEQVSPYS 84

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++ +T T  AA EM  R+           DE+    +T    +  N              
Sbjct: 85  IMAVTFTNKAAREMRARL-----------DELFGQSLTDSGSQHINSR------------ 121

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                 + V T H     +++    +A +  +F I D +   ++I+   +     + LD+
Sbjct: 122 -----AMWVGTFHGLAHRLLKAHWQDAGLPQNFQILDSDDQLRMIKRVYQQ----LNLDD 172

Query: 185 NEELKKAFYEILEISNDEDIE 205
           ++   +     +    DE + 
Sbjct: 173 SKWPHRQAIWYINGQKDEGLR 193


>gi|313903519|ref|ZP_07836910.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM
           13965]
 gi|313466340|gb|EFR61863.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM
           13965]
          Length = 791

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 39/162 (24%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL++     Q  A + P     V A AGSGKT +L +RV  LL     P  +L +T T  
Sbjct: 3   DLLADLNPAQREAVTHPGGPVLVLAGAGSGKTRVLTRRVAYLLEQGVAPHQILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++ A +                                        + +
Sbjct: 63  AAREMRERVEQLVGAGAR--------------------------------------DMWI 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T HA C  I+++         +F I DE+  + ++ E  K 
Sbjct: 85  GTFHASCVRILRRDGYRIGYDRNFVILDEDDRRAVLREVLKE 126


>gi|149191373|ref|ZP_01869625.1| DNA-dependent helicase II [Vibrio shilonii AK1]
 gi|148834790|gb|EDL51775.1| DNA-dependent helicase II [Vibrio shilonii AK1]
          Length = 723

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P     V A AGSGKT +LV R+  L+ + NA P +++ +T
Sbjct: 4   SLLLDGLNDKQREAVAA--PLEHMLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMSVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++   S                                       
Sbjct: 62  FTNKAAAEMRGRIEELMMGSS--------------------------------------S 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD  +   
Sbjct: 84  GMWNGTFHGICHRILRAHYLDAKLPEDFQILDSDDQQRLL----KRLIKAQNLDEKQWPA 139

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 140 RQAAWWINGKKDEGLR 155


>gi|21666221|gb|AAM73615.1| DNA helicase II [Escherichia coli]
          Length = 133

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 43/175 (24%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R   L+ + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 1   PRTNLLVLAGAGSGKTRVLVHRFAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ V T H     +++   
Sbjct: 61  --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++AN+   F I D E   +L+    K  + ++ LD  +   +     +    DE 
Sbjct: 83  MDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEG 133


>gi|332034801|gb|EGI71338.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 721

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ +  A   ++  
Sbjct: 2   DVSQLLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV E + A                                       
Sbjct: 60  VTFTNKAAKEMRSRVEETLKAPV------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     I++    EAN+   F I D +   ++I    K  L S+ +D+ + 
Sbjct: 83  -GGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K F   +    DE + 
Sbjct: 138 PAKQFGWYISAKKDEALR 155


>gi|289807663|ref|ZP_06538292.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 120

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 41/159 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           ++  + E + A  P  +  V A AGSGKT +LV R+  LL + N  P +++ +T T  AA
Sbjct: 2   LNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM HR+ +++                                        + GG+ V T
Sbjct: 60  AEMRHRIGQLMGT--------------------------------------SQGGMWVGT 81

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            H     +++   ++AN+   F I D E   +L++   K
Sbjct: 82  FHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIK 120


>gi|152985841|ref|YP_001351544.1| DNA-dependent helicase II [Pseudomonas aeruginosa PA7]
 gi|150960999|gb|ABR83024.1| DNA helicase II [Pseudomonas aeruginosa PA7]
          Length = 728

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           ++   + P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR
Sbjct: 16  QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +++                                         P G+ V T H    
Sbjct: 76  IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++    EA ++ +F I D +  ++L     K  +  + LD      +     +    D
Sbjct: 98  RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153

Query: 202 EDIE 205
           E + 
Sbjct: 154 EGLR 157


>gi|78486038|ref|YP_391963.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
 gi|78364324|gb|ABB42289.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
          Length = 1182

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D        +  A  P  S  V A AGSGKT +L QR L LL     P  ++ +T TK
Sbjct: 28  ILDEALPDGKARFQAIHPQHSYIVQAPAGSGKTALLTQRFLALLSQVETPEQVVAMTFTK 87

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+LE +       DE  SA I         ++ +   +     +L+ P  L+
Sbjct: 88  KAAAEMRERILEALHFGLTSLDE--SASIYDQNTWHLAQAALQNNQQRQWKLLDNPNRLR 145

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++TI +    ++QQ PL + + +   +A    +  L  +A +  L       + +  +A 
Sbjct: 146 IRTIDSMNGYLVQQMPLLSRLGAQPQVASMNDT--LYLKAVRLALK------DADTTEAS 197

Query: 193 YEILEISND--EDIETLISDIISNRTAL---KLIFFFFSYLWRRKIIEKSL 238
             +L + N      E L+  ++  R       L +   +    R  +EK+L
Sbjct: 198 ASLLRLVNGNYRSAENLLVTMLKKRDQWMGALLSYGQDAEAQERAELEKAL 248


>gi|296392306|ref|ZP_06881781.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAb1]
          Length = 728

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           ++   + P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR
Sbjct: 16  QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +++                                         P G+ V T H    
Sbjct: 76  IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++    EA ++ +F I D +  ++L     K  +  + LD      +     +    D
Sbjct: 98  RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153

Query: 202 EDIE 205
           E + 
Sbjct: 154 EGLR 157


>gi|15600636|ref|NP_254130.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAO1]
 gi|107104547|ref|ZP_01368465.1| hypothetical protein PaerPA_01005625 [Pseudomonas aeruginosa PACS2]
 gi|218894546|ref|YP_002443416.1| DNA-dependent helicase II [Pseudomonas aeruginosa LESB58]
 gi|313111618|ref|ZP_07797417.1| DNA helicase II [Pseudomonas aeruginosa 39016]
 gi|9951773|gb|AAG08828.1|AE004957_3 DNA helicase II [Pseudomonas aeruginosa PAO1]
 gi|7229494|gb|AAF42852.1| mismatch repair protein MutU [Pseudomonas aeruginosa PAO1]
 gi|218774775|emb|CAW30592.1| DNA helicase II [Pseudomonas aeruginosa LESB58]
 gi|310883919|gb|EFQ42513.1| DNA helicase II [Pseudomonas aeruginosa 39016]
          Length = 728

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           ++   + P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR
Sbjct: 16  QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +++                                         P G+ V T H    
Sbjct: 76  IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++    EA ++ +F I D +  ++L     K  +  + LD      +     +    D
Sbjct: 98  RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153

Query: 202 EDIE 205
           E + 
Sbjct: 154 EGLR 157


>gi|254237872|ref|ZP_04931195.1| DNA helicase II [Pseudomonas aeruginosa C3719]
 gi|254242995|ref|ZP_04936317.1| DNA helicase II [Pseudomonas aeruginosa 2192]
 gi|126169803|gb|EAZ55314.1| DNA helicase II [Pseudomonas aeruginosa C3719]
 gi|126196373|gb|EAZ60436.1| DNA helicase II [Pseudomonas aeruginosa 2192]
          Length = 728

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           ++   + P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR
Sbjct: 16  QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +++                                         P G+ V T H    
Sbjct: 76  IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++    EA ++ +F I D +  ++L     K  +  + LD      +     +    D
Sbjct: 98  RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153

Query: 202 EDIE 205
           E + 
Sbjct: 154 EGLR 157


>gi|240139167|ref|YP_002963642.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
 gi|240009139|gb|ACS40365.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
          Length = 1124

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 7/166 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            ++      L  +   RS  V A AGSGKT ++  R+  +L A   P ++  +T T+ AA
Sbjct: 7   GLADAAQRALAMTAHDRSLLVEAGAGSGKTALMAGRIAMMLAAGVAPGSIAAVTFTELAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +E+  RV E++     L +  +  E+  +     +       R  L+   E    L   T
Sbjct: 67  SELLERVGEVVG---RLVEGQVPEELRVVLPNGLSPD----QRARLVEAGEHLDALACTT 119

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           IH FC+ +++ +P+EA+I     +ADE ++  + ++ +   L   +
Sbjct: 120 IHGFCQRLVKPYPVEADIDPGARVADEAEADGIFQDLRDGWLRECL 165


>gi|323701383|ref|ZP_08113057.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574]
 gi|323533642|gb|EGB23507.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574]
          Length = 1243

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 34/220 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            TK +        R+  V+A AG+GKT +LV+R++R++    +P     LL +T T AAA
Sbjct: 6   WTKEQLAAIETRGRNLLVAAAAGAGKTAVLVERIIRMITDPVNPVEIDKLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+                  ++K     P    +S+   LL           + T
Sbjct: 66  AEMRERI---------------GLALSKALNANPRSGHLSRQLALL-------NRASITT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC  +++++  + ++   F +ADE +++ L  E  +         +N      F  +
Sbjct: 104 LHSFCLDLLRRYFYQLDLDPSFRVADEVEAELLRLEVLEELFEQRYNSDN----TTFTTL 159

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++       +  + D++     L+L  F  S+ W +  + 
Sbjct: 160 VDAYGGPRDDAKLQDLV-----LELYRFSGSHPWPKHWLS 194


>gi|311112208|ref|YP_003983430.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931]
 gi|310943702|gb|ADP39996.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931]
          Length = 957

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ID ++  + E +L S       + A AGSGKT +L  R+  LL    A P  +L +T T
Sbjct: 114 LIDGLNDRQREAVLHS--GSPLLIVAGAGSGKTRVLTHRIAHLLATGRATPGQILAITFT 171

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  +I                             +A+H           +
Sbjct: 172 NKAAAEMRERIQALIG---------------------------PRAQH-----------M 193

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+FC  ++++      + S F I D   S++L+    K  
Sbjct: 194 WISTFHSFCVRVLRREAKALGLKSTFTIYDSADSQRLLTLIIKEL 238


>gi|108563927|ref|YP_628243.1| putative recombination protein RecB [Helicobacter pylori HPAG1]
 gi|107837700|gb|ABF85569.1| ATP-dependent nuclease [Helicobacter pylori HPAG1]
          Length = 953

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 15/188 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 90  -SHLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEA 142
             +L +E    +   I  +   K  +        A  +    L     +++ TI AF ++
Sbjct: 65  KENLENENKKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLN--AEIRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199
           I+++F     ++++F +   E +K   ++     L+++  +  EEL     + L      
Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNDGFLSALNNEQLEELSVFIVQCLSYDSYT 180

Query: 200 NDEDIETL 207
           +D  +E L
Sbjct: 181 SDSILERL 188


>gi|40789159|emb|CAE84140.1| putative helicase [Pseudomonas fluorescens]
          Length = 1121

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 15/203 (7%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             + LA DP RS  + A AGSGKT  L  R+L  L     P  +L +T T  AAAE+  R
Sbjct: 29  EARALAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVERPEEVLAITFTNMAAAEIVER 88

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V+  +   +   +  L  E+ +    +  +  + + + +   +L  P  L++ T  +FC 
Sbjct: 89  VIGALQQAATGIEPELVHELPQY---RLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCA 145

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-- 199
           ++  + P+ + +         + +  +  +A   TL S+   N+ ++ +A    LE    
Sbjct: 146 SLASKTPIMSGLGGG---KTTDDASLIYRQAILETLKSV---NDNDIPEALSNALEAGMS 199

Query: 200 -NDEDIETLI---SDIISNRTAL 218
                 E L+    +++  R   
Sbjct: 200 FAKNRFEALVPLFENLLMKRDQW 222


>gi|332171921|gb|AEE21175.1| DNA helicase II [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 724

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 45/220 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + + +    P     + A AGSGKT +LV R+  L+ +    P  +L 
Sbjct: 2   DVSRLLEQLNDKQRDAVA--SPAADMLILAGAGSGKTRVLVHRIAWLMEVEGIAPWGILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ E+  +                                       
Sbjct: 60  VTFTNKAAREMRGRIEELQGS--------------------------------------A 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + + T H     +++    EA +  +F I D +   +L     +  + S+ LD  + 
Sbjct: 82  LSNMWIGTFHGIAHRLLRTHYAEAKLPENFQILDSDDQYRL----VRRVIKSMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +  + DE +     D   +    KL   +  Y
Sbjct: 138 APKHVQWYINGNKDEGLRPEHIDTHGDYNQKKLCEIYQVY 177


>gi|116053593|ref|YP_793920.1| DNA-dependent helicase II [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588814|gb|ABJ14829.1| DNA helicase II [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 728

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           ++   + P     V A AGSGKT +LV R+  L+ + +A P ++L +T T  AAAEM HR
Sbjct: 16  QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +++                                         P G+ V T H    
Sbjct: 76  IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++    EA ++ +F I D +  ++L     K  +  + LD      +     +    D
Sbjct: 98  RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153

Query: 202 EDIE 205
           E + 
Sbjct: 154 EGLR 157


>gi|304317472|ref|YP_003852617.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778974|gb|ADL69533.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 1088

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 25/180 (13%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAA 75
                EQL A D +++  + A AGSGKT +L +R ++LL          ++ +T T+ AA
Sbjct: 16  DDLSEEQLKALDISKNIALKAGAGSGKTRVLTKRYIKLLNDIPEIKIDNIVAITFTRKAA 75

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ + I     +  E                      +   +    +     + T
Sbjct: 76  SEMKDRIRKEIEVMCKVDSE----------------------KEKWMEFRNSLSFANIDT 113

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYE 194
           IH FCE I++    +A +   F I DE +S   +    +  +   + D  N++L K  ++
Sbjct: 114 IHGFCEKIIRDNFADAGVDPLFTIIDEAESNTAVHNIVRWIVDEALNDPVNKDLLKIMFK 173


>gi|260577850|ref|ZP_05845783.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
 gi|258604009|gb|EEW17253.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
          Length = 950

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 75/235 (31%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L+     +Q  A +   S   + A AGSGKT +L +R+  LL     P  +L +T T  A
Sbjct: 132 LLEGLNPQQRQAVEHMGSPLLIVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTNKA 191

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV++++   +                                        + V 
Sbjct: 192 AAEMRERVVDMVGPQAE--------------------------------------RMWVS 213

Query: 135 TIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKL----IEEAKKST------------- 176
           T H+FC  +++     A  + ++F+I D + SK+L    I++A                 
Sbjct: 214 TFHSFCVRVLRANAHLAPGLNTNFSIYDSDDSKRLMTMIIKDASLDLKEFSPRGVLNVIS 273

Query: 177 ------------LASIMLDNNEE------LKKAFYEILEISNDEDIETLISDIIS 213
                       L     D+N        L K +   L  +N  D + LI ++++
Sbjct: 274 NWKNELVGPAGALEEAQRDSNPHTAQIATLYKTYQNRLRAANAVDFDDLIGEVVA 328


>gi|218134063|ref|ZP_03462867.1| hypothetical protein BACPEC_01953 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991438|gb|EEC57444.1| hypothetical protein BACPEC_01953 [Bacteroides pectinophilus ATCC
           43243]
          Length = 163

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 25/165 (15%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           ++  VSA AGSGKT +LV+R++R++     +     L+ +T T AAAA+M  R+      
Sbjct: 6   KNILVSAAAGSGKTAVLVERIIRMITDPDNHVDIERLVVVTFTNAAAAQMRERI------ 59

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                     A +  +  + P+  ++ +   ++          ++ TI +FC  I++   
Sbjct: 60  ---------GAALESMIEENPSDRNLQRQLAMIHMA-------QITTIDSFCLNILRNNY 103

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           +  +I   F IAD+ + + +  +     L       NE+  + + 
Sbjct: 104 MNLDIDPGFRIADQGELELIKADVMGELLEKYYAGGNEDFLRTYQ 148


>gi|308051416|ref|YP_003914982.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799]
 gi|307633606|gb|ADN77908.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799]
          Length = 721

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 45/193 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D ++  +   + A+    +  V A AGSGKT +L  R+  LL      P  +L +T T 
Sbjct: 7   LDTLNDKQRAAVEAA--PGAVLVLAGAGSGKTRVLTHRIAWLLEEQGESPYAILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM HR+ +++                                            + 
Sbjct: 65  KAAAEMRHRIEDLVHGPV--------------------------------------NRMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H     +++    EA +   F I D +  ++L     K  L S+ LD      +  
Sbjct: 87  IGTFHGLAHRLLRAHYQEAGLPEGFQILDSDDQQRL----VKRILKSLQLDEKRWSPRQA 142

Query: 193 YEILEISNDEDIE 205
              +    DE + 
Sbjct: 143 VGYINAKKDEGLR 155


>gi|149908513|ref|ZP_01897175.1| DNA helicase II [Moritella sp. PE36]
 gi|149808347|gb|EDM68284.1| DNA helicase II [Moritella sp. PE36]
          Length = 722

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 47/230 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A  P  S  + A AGSGKT +LV R+  L+ +    P +LL 
Sbjct: 2   DVSLLLDGLNDKQRDAVAA--PQSSMLILAGAGSGKTRVLVHRLAWLMQVEQCSPYSLLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV +++                                         
Sbjct: 60  VTFTNKAAAEMRGRVDKLLEGRQQ------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++   L+A + + F I D +   +L+    K  + ++ LD  + 
Sbjct: 84  --GMWIGTFHGIAHRLLRAHHLDAGLPAEFQIIDSDDQLRLL----KRLIKAMNLDEKQW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
             K     +    DE +            R  +K+   +     R  +++
Sbjct: 138 PAKQAMWYIGGKKDEGLRPEHLQAYDPIERNWIKIYQAYQESCDRAGLVD 187


>gi|269926936|ref|YP_003323559.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790596|gb|ACZ42737.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798]
          Length = 779

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 35/167 (20%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +S  ++ ++  + E + A  P     V A  GSGKT +L  R+  LL     P  +L +T
Sbjct: 8   YSSILEGLNDKQLEAVTA--PDGPVLVLAGPGSGKTRVLTHRIAFLLSQGVSPFNILAVT 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++       +                                   
Sbjct: 66  FTNKAAREMRERIERLVGGAFGSYEAR--------------------------------- 92

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + + T H+ C  ++++      I+ +F I D++   +LI++A    
Sbjct: 93  NITMGTFHSICSRVLRRDGGAIGISPNFVIYDDDDQIRLIKQALNEI 139


>gi|229593437|ref|YP_002875556.1| DNA-dependent helicase II [Pseudomonas fluorescens SBW25]
 gi|229365303|emb|CAY53652.1| DNA helicase II [Pseudomonas fluorescens SBW25]
          Length = 727

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   + P     V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA ++  F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLSQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|220933272|ref|YP_002512171.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994582|gb|ACL71184.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
          Length = 721

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 45/194 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D ++  + E + A DP     V A AGSGKT +L  R+  L+ +    P ++L +T T
Sbjct: 6   LLDSLNPAQREAVSA-DPG-PVLVLAGAGSGKTRVLTHRIAWLIQVEGLSPHSILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  ++                                           G+
Sbjct: 64  NKAAAEMRGRIEALLGMPVR--------------------------------------GM 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H     +++    +A +   F I D +   ++     K  L ++ LD      + 
Sbjct: 86  WVGTFHGLAHRLLRAHWQDAGLPQGFQILDSDDQLRM----VKRVLKALELDEARWPPRQ 141

Query: 192 FYEILEISNDEDIE 205
               +    DE + 
Sbjct: 142 AQWFINARKDEGVR 155


>gi|119475194|ref|ZP_01615547.1| DNA helicase II [marine gamma proteobacterium HTCC2143]
 gi|119451397|gb|EAW32630.1| DNA helicase II [marine gamma proteobacterium HTCC2143]
          Length = 725

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 43/232 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + + + AS    +  V A AGSGKT +LV R+  L+      P ++L 
Sbjct: 2   DVSYILNDLNDAQRQAVAAS--ATNLLVLAGAGSGKTRVLVHRIAWLIQAEGLSPFSILS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ E++ + +                                  L  
Sbjct: 60  VTFTNKAAKEMRARIDELLGSSASG--------------------------------LGA 87

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P G+ V T H     +++    +A +  +F I D +   +L++   +       LD +  
Sbjct: 88  PRGMWVGTFHGIAHRLLKAHWKQAGLPQNFQILDSDDQLRLVKRIHREF----DLDESRW 143

Query: 188 LKKAFYEILEISNDEDIETL-ISDI---ISNRTALKLIFFFFSYLWRRKIIE 235
             +     +    DE      I D    +++ T L++   +     R+ +++
Sbjct: 144 PPRQSQWFINGQKDEGKRAAHIEDYGKDLNHSTMLRVYLAYEQACDRQGVVD 195


>gi|91776104|ref|YP_545860.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus
           flagellatus KT]
 gi|91710091|gb|ABE50019.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus
           flagellatus KT]
          Length = 1129

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 12/232 (5%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           ++  DL+   +  +  A +   S  V A AG+GKT +L QR LRLL   + P  ++ +T 
Sbjct: 4   AQATDLLKLDRVSRERALE-LASFIVEAPAGAGKTELLTQRFLRLLTTVSAPEQIIAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  R+L+ +   +  S    +    K Q  +  K  +  A  L   +L+ P  
Sbjct: 63  TNKAAAEMRARILDSLLMAASGSPPPQAH---KQQTFRLGKEALRHADSLGWELLDHPSR 119

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           L++ TI +    + +Q PL +   S  A+   E +      A + TLA +  ++  E  +
Sbjct: 120 LRIFTIDSLSGHLSRQMPLLSRFGSQPAV--SEDASAHYRLAAERTLALVDEESMGEAVR 177

Query: 191 AFYEILEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                ++  ND + +  L+ D++  R          ++   ++  E++L  +
Sbjct: 178 LALRYVD--NDVQKLTGLLVDMLGKRDQWLDYA---NHGNLQQAAERALEHL 224


>gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
 gi|148842716|gb|EDL57089.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
          Length = 1171

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 27/224 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAA 76
           T  +    +    S  +SA AG GKT +L QR L+L+   A P     ++ +T T+ AA 
Sbjct: 8   TDQQAAAINTRDVSIALSAGAGCGKTFVLTQRFLKLIEPGAPPDRLSHIVAITFTERAAR 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ E                + +++   P + +  +A      ++      ++ TI
Sbjct: 68  EMRDRIRETC--------------LDQLKNCPPEEVNHWQA------VIRGLDSARISTI 107

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC +I++   + A +  HF + ++  S   + +     +  ++   N +  +  Y   
Sbjct: 108 HSFCTSILRSHAVSARLDPHFGLLEQGTSDTFLRKVVHEAVHELLKQENADCIQMVYRF- 166

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240
                E    L+  ++  +  L+   F      +     +  W 
Sbjct: 167 ---GLEKTYELLISLVPQQFRLEFDEFRELTPEQLAGRMRDFWE 207


>gi|254428788|ref|ZP_05042495.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881]
 gi|196194957|gb|EDX89916.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881]
          Length = 757

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 87/237 (36%), Gaps = 47/237 (19%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LAN 59
           ++   +  + +  ID ++  + + + A D  R   V A AGSGKT +LV R+   +    
Sbjct: 32  LLNFRAMDDVTSLIDGLNPAQRDAVAADD--RHLLVLAGAGSGKTRVLVHRIAWQIATEQ 89

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  +L +T T  AAAEM  R+ +++                                 
Sbjct: 90  ASPFGILAVTFTNKAAAEMRGRIEQLLDM------------------------------- 118

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                  +  G+ V T H     +++    EA +   F I D +   +LI+   K     
Sbjct: 119 -------SADGMWVGTFHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSK----E 167

Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL--KLIFFFFSYLWRRKII 234
           + LD      +     +    DE +     D+  +  AL  + I+F +     R  +
Sbjct: 168 LGLDEQRWPARQATWFINGQKDEGLRARHMDVGGDLFALTMQKIYFAYEDACERGGL 224


>gi|254497559|ref|ZP_05110348.1| DNA-dependent helicase II [Legionella drancourtii LLAP12]
 gi|254353217|gb|EET11963.1| DNA-dependent helicase II [Legionella drancourtii LLAP12]
          Length = 725

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +  +  +++ + E + A  P  +  V A AGSGKT +LV R+  L+   +  P  +L +T
Sbjct: 4   AALLKGLNERQREAVTA--PLGNTLVLAGAGSGKTKVLVSRIAWLIEEEHISPHGILAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++                                           
Sbjct: 62  FTNKAAGEMRARLNSLLATPVL-------------------------------------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           GL V T H  C  ++++   EAN+   F I D E   ++I    K  +A++ LD+ +   
Sbjct: 84  GLWVGTFHGLCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVIAALNLDSEQWPV 139

Query: 190 KAFYEILEISNDEDIE 205
           K     +    DE + 
Sbjct: 140 KQAQSFINGRKDEGVR 155


>gi|229822911|ref|ZP_04448981.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271]
 gi|229787724|gb|EEP23838.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271]
          Length = 1311

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 32/222 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77
              S+         +  VSA+AGSGKT +L++R+L  LL   A+   LL  T T+AAA+E
Sbjct: 15  FNDSQWEAIHQRGSNILVSASAGSGKTTVLIERILNHLLTHYANMDQLLVSTFTEAAASE 74

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   +    +                    +D ++  HL+  +   P    ++T+H
Sbjct: 75  MKARMENRLKQAVN------------------QTADRAEQAHLVSQLQLLPAS-HIRTLH 115

Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFYE 194
           +FC  ++QQ+    +    F +  DE Q   L +E  +  +  +  D +  E+L     +
Sbjct: 116 SFCLQVIQQYFYIIDFDPSFRLLTDETQKSLLYQEVWQELMIDLAQDPDWQEKLFHLLAQ 175

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
                +D+ +  LI D         L  F  S+   +  + +
Sbjct: 176 FSPGPSDQGLYQLILD---------LYQFASSHPEPQVWLSQ 208


>gi|134103111|ref|YP_001108772.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003946|ref|ZP_06561919.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915734|emb|CAM05847.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 873

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 39/172 (22%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           S +   +  DL++    +Q  A + + S   V A AGSGKT +L  R+  LL    HP  
Sbjct: 20  SQRRGPDPQDLLAGLNPQQRDAVEHSGSPLLVVAGAGSGKTRVLTNRIAYLLARGVHPGQ 79

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++ +T T  AAAEM  RV +++   +                                  
Sbjct: 80  IMAITFTNKAAAEMKERVADLVGRRA---------------------------------- 105

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 + V T H+ C  ++++      ++S+F+I D + S++LI    +  
Sbjct: 106 ----NAMWVSTFHSMCVRVLRREAKTLGMSSNFSIYDADDSRRLITIIAREL 153


>gi|121605093|ref|YP_982422.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120594062|gb|ABM37501.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polaromonas
           naphthalenivorans CJ2]
          Length = 1103

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 27/219 (12%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--------------PSTLLCLTH 70
            +A DP RS  + A AG+GKT +LV R++R LL  A+              P  +L +T 
Sbjct: 19  AIACDPRRSVAIEACAGAGKTWMLVSRIVRALLDGANAPDPASGTPREPVRPHEILAITF 78

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEI----TKIQGKKPNKSDMSKAR-HLLITIL 125
           TK AA EM  R+ E +  ++H  DE L  E+       Q    + +DM +   +L  ++L
Sbjct: 79  TKKAAGEMRERLDEWLQKFTHADDETLRQELIMRGVSSQKSLQSNADMRRQLSNLYRSML 138

Query: 126 ETPGGLKVQTIHAFCEAIMQQFP----LEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
            +   ++++T H++  A+++  P        +  ++ + +++   + +    +   A++ 
Sbjct: 139 ASGRAVQIRTFHSWFAALLRSAPVAVLHRLGMPVNYQLLEDDAPARAL--VWRRFYAALA 196

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220
            D    LK  F  ++        +  +   +  RT   L
Sbjct: 197 KD--ALLKADFEALVLGHGRHQADKALQSALDKRTEFVL 233


>gi|77164123|ref|YP_342648.1| DNA-dependent helicase II [Nitrosococcus oceani ATCC 19707]
 gi|254435365|ref|ZP_05048872.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76882437|gb|ABA57118.1| ATP-dependent DNA helicase UvrD [Nitrosococcus oceani ATCC 19707]
 gi|207088476|gb|EDZ65748.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 717

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
           + S  ++ +++ + E   A  P     V A AGSGKT +LV R+  L+      P  LL 
Sbjct: 2   DISSLLNPLNKAQREAAAA--PPGHHLVLAGAGSGKTRVLVHRMAWLIRSQGIAPVNLLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ E++                                         
Sbjct: 60  VTFTNKAAGEMRGRIEELLETPV------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++    EA +   F I D E   +LI    +  L ++ LD +  
Sbjct: 83  -GGMWVGTFHGIAHRLLRAHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLDESRW 137

Query: 188 LKKAFYEILEISNDEDIE-TLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
             +     +    D+ +    + +  +   R  +++   + S+  R  +++
Sbjct: 138 PPRQAQWFINSHKDKGLRPQHLEEGTNPHVRQQIRIYHDYQSHCERSGLVD 188


>gi|312963948|ref|ZP_07778419.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|311281983|gb|EFQ60593.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 727

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   + P     V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLAQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|309751169|gb|ADO81153.1| DNA helicase II [Haemophilus influenzae R2866]
          Length = 727

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 87  LFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSEDQ 124


>gi|330993524|ref|ZP_08317459.1| putative DNA helicase II-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329759554|gb|EGG76063.1| putative DNA helicase II-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 737

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 44/192 (22%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +++   EQ  A + T     V A AG+GKT +L  R   +LL+  A P+ +L +T T 
Sbjct: 12  DYLNRLNPEQRDAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPNQILAVTFTN 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                       GL 
Sbjct: 72  KAAREMRERVSALLGEPAE--------------------------------------GLW 93

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  ++++      +TS F I D +   +L+++     L    +D      +A 
Sbjct: 94  LGTFHALCARMLRRHAEHVGLTSSFTILDTDDQLRLLKQ----VLEPYRIDTKRWPPQAI 149

Query: 193 YEILEISNDEDI 204
             +++   D  +
Sbjct: 150 MGVIQRWKDRGL 161


>gi|145627832|ref|ZP_01783633.1| DNA helicase II [Haemophilus influenzae 22.1-21]
 gi|145639293|ref|ZP_01794899.1| DNA helicase II [Haemophilus influenzae PittII]
 gi|144979607|gb|EDJ89266.1| DNA helicase II [Haemophilus influenzae 22.1-21]
 gi|145271596|gb|EDK11507.1| DNA helicase II [Haemophilus influenzae PittII]
          Length = 726

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSEDQ 123


>gi|254448468|ref|ZP_05061928.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium
           HTCC5015]
 gi|198261851|gb|EDY86136.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium
           HTCC5015]
          Length = 725

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +    P  L+ 
Sbjct: 2   DVSYLLDGLNDAQREAVCA--PPANLLVLAGAGSGKTRVLVHRMAWLIEVEKVSPYGLMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R   ++   +                                     
Sbjct: 60  VTFTNKAAAEMRQRCEALLGMPT------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H     +++Q   EA +   F I D +   +L++   +S    + LD +  
Sbjct: 83  -GGMWVGTFHGISHRLLRQHWQEAGLPEGFQILDSQDQLRLVKRVVRS----LELDESRW 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    DE 
Sbjct: 138 PPKQAMWFINARKDEG 153


>gi|89889935|ref|ZP_01201446.1| putative ATP-dependent helicase, UvrD/REP helicase family
           [Flavobacteria bacterium BBFL7]
 gi|89518208|gb|EAS20864.1| putative ATP-dependent helicase, UvrD/REP helicase family
           [Flavobacteria bacterium BBFL7]
          Length = 1057

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 13/198 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           + SA+AGSGKT+ L +  L LL     N H   +L +T T  A AEM  RVLE +  +  
Sbjct: 8   FYSASAGSGKTYTLARDYLALLFQSQFNNHYRKILAVTFTNKAVAEMKERVLEHLYNFGK 67

Query: 92  LSDEILSAEI---TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 S  I    K       +   +KA  +   +L       + TI AF   I++ F 
Sbjct: 68  QPVPNESLGIFNHIKKLTGLSEQQLSTKAIKIHQRLLHDYSAFDIVTIDAFNHRILRTFA 127

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL- 207
            + ++ + F +  E  +  LI +A ++ LA    D     K   + + +I N++  +   
Sbjct: 128 KDIDLPAGFEV--ELDTDSLINKAIQNLLARAGRDKELTKKLVSFSLSKIDNNKSWDVAY 185

Query: 208 ----ISDIISNRTALKLI 221
               IS +I N    K +
Sbjct: 186 DLMQISALIKNENHFKYL 203


>gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073]
 gi|83573758|gb|ABC20310.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073]
          Length = 729

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 45/208 (21%)

Query: 13  TIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
             D ++     +Q           V A AGSGKT +L  RV  L+     P  +L +T T
Sbjct: 4   LADFMALLNGPQQEAVKHRGTPLLVLAGAGSGKTRVLTYRVAALIQEGVRPENILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++   +                                       GL
Sbjct: 64  NKAAQEMKERLEGLVGEAAR--------------------------------------GL 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+ C  I+++         +F I D +      + A K  L  + LD+ +   ++
Sbjct: 86  WVSTFHSACVRILRREAHLLGYRPNFVIYDTDDQ----QAALKEVLKELDLDDKKYPPRS 141

Query: 192 FYEILEISND--EDIETLISDIISNRTA 217
             +++ ++ +  +  E  +    + R  
Sbjct: 142 LAQVISMAKNDLKTPERFLDGAATFREQ 169


>gi|258512041|ref|YP_003185475.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478767|gb|ACV59086.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 1240

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 24/185 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTK 72
           ++ +K ++        +  VSA AGSGKT +L +R+  L  A   P      LL +T T+
Sbjct: 3   VNWSKEQERAIRARGTNLVVSAGAGSGKTAVLAERIASL--AEGDPKFRMDQLLVMTFTE 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R++  +   +  +++   +                KAR     +       +
Sbjct: 61  AAAEEMRARIVRRLAERAAEAEQAGES---------------VKARR-FSRLAHRANDAQ 104

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM--LDNNEELKK 190
           + TIH+FC ++++   +EA +   F +   E+   L+  A ++TL      L+   +L  
Sbjct: 105 ISTIHSFCLSLLRDHAVEAGLVPGFRVLSGEEDAVLLRGAAQATLDEWARHLERGPQLCT 164

Query: 191 AFYEI 195
           A   +
Sbjct: 165 ALAAL 169


>gi|323702799|ref|ZP_08114458.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM
           574]
 gi|323532187|gb|EGB22067.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM
           574]
          Length = 721

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D+++     Q  A         V A AGSGKT +L  R+ ++L     P  +L +T T 
Sbjct: 1   MDVLANLNPAQAAAVQHTEGPLLVLAGAGSGKTRVLTHRIAKILEQGVPPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV  ++   +                                        L 
Sbjct: 61  KAAAEMKSRVENLVPQAAR--------------------------------------DLW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  ++++        S+F+I D+   + LI+E  K  
Sbjct: 83  VMTFHSACLRMLRREIQALGYNSNFSIYDDADQQTLIKECLKEL 126


>gi|70733445|ref|YP_263220.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf-5]
 gi|68347744|gb|AAY95350.1| DNA helicase II [Pseudomonas fluorescens Pf-5]
          Length = 727

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 44/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
             Q +A+   R   V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM H
Sbjct: 16  QRQAVAASVGRQ-LVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 75  RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA ++  F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLSQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|146309527|ref|YP_001189992.1| DNA-dependent helicase II [Pseudomonas mendocina ymp]
 gi|145577728|gb|ABP87260.1| ATP-dependent DNA helicase UvrD [Pseudomonas mendocina ymp]
          Length = 727

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 44/199 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           Q   E + L S   ++    + P     V A AGSGKT +LV R+  L+ A  A P ++L
Sbjct: 2   QNDPELL-LASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAMGASPHSIL 60

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AAAEM HR+ +++                                        
Sbjct: 61  SVTFTNKAAAEMRHRIEQMLG--------------------------------------H 82

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            P G+ V T H     +++    EA +T +F I D +  ++LI    K  +  + LD   
Sbjct: 83  NPAGMWVGTFHGLAHRLLRAHWQEAALTENFQILDSDDQQRLI----KRVIRELGLDEQR 138

Query: 187 ELKKAFYEILEISNDEDIE 205
              K     +    DE   
Sbjct: 139 WPAKQAQWFINGQKDEGFR 157


>gi|300930020|ref|ZP_07145453.1| DNA helicase II [Escherichia coli MS 187-1]
 gi|300462110|gb|EFK25603.1| DNA helicase II [Escherichia coli MS 187-1]
          Length = 700

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 43/177 (24%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++  
Sbjct: 1   PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 + GG+ V T H     +++   
Sbjct: 61  --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           ++AN+   F I D E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 83  MDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 135


>gi|145637060|ref|ZP_01792723.1| DNA helicase II [Haemophilus influenzae PittHH]
 gi|145269714|gb|EDK09654.1| DNA helicase II [Haemophilus influenzae PittHH]
          Length = 726

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSEDQ 123


>gi|307250580|ref|ZP_07532522.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306857396|gb|EFM89510.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 699

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+A++   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122


>gi|165976747|ref|YP_001652340.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165876848|gb|ABY69896.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 732

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+A++   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122


>gi|330812675|ref|YP_004357137.1| putative DNA helicase II [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380783|gb|AEA72133.1| putative DNA helicase II [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 727

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 44/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
             Q +A+   R   V A AGSGKT +LV R+  L+ + NA P ++L +T T  AAAEM H
Sbjct: 16  QRQAVAASVGRQ-LVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------NPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA ++  F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLSQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|261840231|gb|ACX99996.1| ATP-dependent nuclease [Helicobacter pylori 52]
          Length = 949

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 15/188 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK--------ARHLLITILETPGGLKVQTIHAFCEA 142
             + E    +       K  +             A+ +    L     +++ TI AF ++
Sbjct: 65  KENLENEKEKEKSQNILKELEEKYRLDPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199
           I+++F     ++++F +   E +K   ++  +S L+++     EEL     + L      
Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNESFLSALNNKQLEELSVFIAQCLSYDSYT 180

Query: 200 NDEDIETL 207
           +D  +E L
Sbjct: 181 SDSVLERL 188


>gi|254497523|ref|ZP_05110315.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           drancourtii LLAP12]
 gi|254353240|gb|EET11983.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
           drancourtii LLAP12]
          Length = 1084

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 6/216 (2%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++  A+DPT+S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA+EM  R+
Sbjct: 7   QRNQATDPTQSFIVQAPAGSGKTEILTQRYLRLLGRVTAPEQIIALTFTRKAASEMRERI 66

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           +  +   ++    + +    +       +  + +       +L  P  LK+ TI A C++
Sbjct: 67  IMALQQAAN---NVHAKSPHQQMTLDFAREALHRDAQYHWDLLHQPNRLKIVTIDALCQS 123

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           I Q  PL     ++  I D+ +S  L    ++    ++     ++  K     ++   D 
Sbjct: 124 INQAIPLLEKQIAYSQITDKAESHYL-NSGRRCIQFAVDTPEYQQAIKTLLLHVDNRQDR 182

Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            ++ L   +++ R    L   F +    +   E +L
Sbjct: 183 LLD-LFKTLLAQRDQW-LAPLFQARAQEKSTFEHAL 216


>gi|153209587|ref|ZP_01947447.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218647|ref|YP_002305434.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154]
 gi|120575306|gb|EAX31930.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012909|gb|ACJ20289.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154]
          Length = 1110

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +  A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R++
Sbjct: 7   RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +            +E  K       +  + + +H    +   P  L++ TI A    I
Sbjct: 67  AALNEAQTQPA---PSESHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201
             Q P+     +  +  + E+  +   EA      S      EE      E+L   ++  
Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRLFES------EEHADTIEELLLHLDNKA 177

Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241
           E +ETL+  ++  R      +I  + +    +  +EK+L +I
Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219


>gi|148828339|ref|YP_001293092.1| DNA-dependent helicase II [Haemophilus influenzae PittGG]
 gi|148719581|gb|ABR00709.1| DNA helicase II [Haemophilus influenzae PittGG]
          Length = 726

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 86  LVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123


>gi|322515360|ref|ZP_08068354.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus
           ureae ATCC 25976]
 gi|322118587|gb|EFX90815.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus
           ureae ATCC 25976]
          Length = 732

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+AN+   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122


>gi|190150646|ref|YP_001969171.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307263993|ref|ZP_07545594.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189915777|gb|ACE62029.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306870682|gb|EFN02425.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 732

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+AN+   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122


>gi|16273110|ref|NP_439344.1| DNA-dependent helicase II [Haemophilus influenzae Rd KW20]
 gi|1174922|sp|Q02322|UVRD_HAEIN RecName: Full=DNA helicase II
 gi|1574115|gb|AAC22841.1| DNA helicase II (uvrD) [Haemophilus influenzae Rd KW20]
          Length = 727

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E++ A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DISELLDGLNDKQRERVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 87  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124


>gi|308064321|gb|ADO06208.1| putative recombination protein RecB [Helicobacter pylori Sat464]
          Length = 949

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI-- 62

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK-----------ARHLLITILETPGGLKVQTIHAF 139
            L  E L +E  K + +   K    K           A+ +    L     +++ TI AF
Sbjct: 63  -LQKENLESEKEKEKSQNILKELEEKYRLNPSFVQNSAQKIYQRFLN--AEIRISTIDAF 119

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--- 196
            ++I+++F     ++++F +   E +K   ++   S L+++     EEL     + L   
Sbjct: 120 FQSILRKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALNNKQLEELSVFITQCLSHD 177

Query: 197 EISNDEDIETL 207
             ++D  +E L
Sbjct: 178 SYTSDSILERL 188


>gi|301169926|emb|CBW29530.1| DNA-dependent ATPase I and helicase II [Haemophilus influenzae
           10810]
          Length = 727

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 87  LVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124


>gi|165924171|ref|ZP_02220003.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334]
 gi|165916386|gb|EDR34990.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334]
          Length = 1110

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +  A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R++
Sbjct: 7   RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +            +E  K       +  + + +H    +   P  L++ TI A    I
Sbjct: 67  AALNEAQTQPA---PSESHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201
             Q P+     +  +  + E+  +   EA      S      EE      E+L   ++  
Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRLFES------EEHADTIEELLLHLDNKA 177

Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241
           E +ETL+  ++  R      +I  + +    +  +EK+L +I
Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219


>gi|307246245|ref|ZP_07528326.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307255229|ref|ZP_07537044.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259663|ref|ZP_07541387.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306852854|gb|EFM85078.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306861778|gb|EFM93757.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866308|gb|EFM98172.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 732

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+AN+   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122


>gi|293374973|ref|ZP_06621268.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909]
 gi|292646383|gb|EFF64398.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909]
          Length = 1198

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 24/225 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAA 76
           +    +            +SA AGSGKT +LV+R++ +++    +   LL +T T+AAAA
Sbjct: 12  TWNDEQWEAIYRKGEDLLISAGAGSGKTAVLVERMIQKIIQEKLNIDELLVMTFTEAAAA 71

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   I                    K+P+   +          L       + T 
Sbjct: 72  EMKQRMRSRI---------------QDELEKQPDNEHLKVQ-------LNKISQSHISTF 109

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFC  +++++     +   F IAD+ +   + +E  +S    +  D +E       +  
Sbjct: 110 HAFCNKLIKRYYYLLELDPVFKIADDIEVGIIQDEVVESLFDDLSDDEDESYLLLSRQFN 169

Query: 197 EISNDEDIETLISDIIS-NRTALKLIFFFFSYLWRRKIIEKSLWS 240
              NDE+++ ++  I    R+  ++I +  +     +  E+ L S
Sbjct: 170 NDRNDENLKVMLLKIYELARSNPEMIQWLENLPHLYQWDEQDLMS 214


>gi|319776569|ref|YP_004139057.1| DNA helicase II [Haemophilus influenzae F3047]
 gi|319897345|ref|YP_004135541.1| DNA helicase ii [Haemophilus influenzae F3031]
 gi|317432850|emb|CBY81215.1| DNA helicase II [Haemophilus influenzae F3031]
 gi|317451160|emb|CBY87393.1| DNA helicase II [Haemophilus influenzae F3047]
          Length = 727

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 87  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124


>gi|307261810|ref|ZP_07543476.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306868628|gb|EFN00439.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 732

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+AN+   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122


>gi|260581112|ref|ZP_05848933.1| DNA helicase II [Haemophilus influenzae RdAW]
 gi|260092241|gb|EEW76183.1| DNA helicase II [Haemophilus influenzae RdAW]
          Length = 727

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 87  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124


>gi|309973348|gb|ADO96549.1| DNA helicase II [Haemophilus influenzae R2846]
          Length = 727

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 87  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124


>gi|32034174|ref|ZP_00134396.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208790|ref|YP_001054015.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae L20]
 gi|126097582|gb|ABN74410.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 732

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+A++   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122


>gi|145635037|ref|ZP_01790743.1| DNA helicase II [Haemophilus influenzae PittAA]
 gi|145267645|gb|EDK07643.1| DNA helicase II [Haemophilus influenzae PittAA]
          Length = 726

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123


>gi|152978934|ref|YP_001344563.1| DNA-dependent helicase II [Actinobacillus succinogenes 130Z]
 gi|150840657|gb|ABR74628.1| DNA helicase II [Actinobacillus succinogenes 130Z]
          Length = 731

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 49/224 (21%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L QR+  L+ +      +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTQRIAWLIAVEGISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+   +  +S                          ++ L       
Sbjct: 60  VTFTNKAAAEMRQRIESALARYS--------------------------SQRLF------ 87

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ V T H+    +++    +A +   F I D E   +            + L N +E
Sbjct: 88  --GMWVGTFHSIAHRLLRAHYADAGLPQDFQILDSEDQLR-------LVKRLLKLHNYDE 138

Query: 188 LKKAFYEILEISNDEDIETL----ISDIISNRTALKLIFFFFSY 227
                 +     N++  E L    I D+ ++R   + I  +  Y
Sbjct: 139 KMYPAKQACWYINNKKDEGLRPQQIDDM-NDRQEQEWIKIYRIY 181


>gi|325286154|ref|YP_004261944.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
 gi|324321608|gb|ADY29073.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
          Length = 1039

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           SA+AGSGKT+ L +  L+++L++A       +L +T T  A  EM  R+L+ + A+S + 
Sbjct: 10  SASAGSGKTYTLAKEYLKIILSSATAKSYRQILAITFTNKAVNEMKQRILDNLYAFSKVD 69

Query: 94  DEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           +E   +++     K+ N   +    +A+ +  +IL       + TI  F   +++ F  +
Sbjct: 70  EENKPSDLFLDVAKELNVSTEELQKRAKQVHKSILHNYAFFDISTIDKFTHRLIRTFAKD 129

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             I  +F +  + +   L+ EA +  LA    D         +   +I +D+  +
Sbjct: 130 LKIPQNFEVVLDIE--LLLSEAVERLLAKAGTDKLLTSTLLEFTFEKIDDDKSWD 182


>gi|329124082|ref|ZP_08252629.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus
           aegyptius ATCC 11116]
 gi|327467507|gb|EGF13005.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus
           aegyptius ATCC 11116]
          Length = 727

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DISELLDGLNDKQREAVAA--PLGNRLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 87  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124


>gi|307257392|ref|ZP_07539162.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864242|gb|EFM96155.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 732

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+AN+   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122


>gi|303250592|ref|ZP_07336789.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307252961|ref|ZP_07534849.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650580|gb|EFL80739.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306859599|gb|EFM91624.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 732

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+A++   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122


>gi|145633082|ref|ZP_01788814.1| DNA helicase II [Haemophilus influenzae 3655]
 gi|144986308|gb|EDJ92887.1| DNA helicase II [Haemophilus influenzae 3655]
          Length = 726

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123


>gi|313896167|ref|ZP_07829720.1| ATP-dependent helicase/nuclease subunit A family protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974966|gb|EFR40428.1| ATP-dependent helicase/nuclease subunit A family protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 270

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 19/224 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           +  T  ++       ++  V+A AGSGKT +LV+R++  + +       +L LT TKAAA
Sbjct: 5   MRFTADQRRAIETRGQNILVAAAAGSGKTRVLVERIIAQVRSGELSLDRVLVLTFTKAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+           +  L+AEI +I  ++   SD  +    L        G  + T
Sbjct: 65  AEMRERI-----------ETALNAEIDRIAEERAATSDADEEIAALERQRILLTGADIST 113

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194
            H+FC+ I+Q +     I  ++ +A E++   L  +  +  L         +     F  
Sbjct: 114 FHSFCQRILQTYIEATQIPPNYRLASEQEILLLTNDVFERLLEEKYSAAAAQGDADGFLA 173

Query: 195 ILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
             +    D+  +  +   +     L L  F  S       +   
Sbjct: 174 FADAYVGDKGGDERLQKAV-----LALYKFSLSQPSPETWLAAQ 212


>gi|296111905|ref|YP_003622287.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU 11154]
 gi|295833437|gb|ADG41318.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU 11154]
          Length = 1241

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 35/229 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T ++Q    +   +  V+A+AGSGKT +L++R+++ +LA       L +T T AAA EM
Sbjct: 5   FTINQQRAVQETGHNILVAASAGSGKTTVLIERLIQKILAGTSVENFLIVTFTHAAANEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   I      +DE L                    +  L   L       + TI A
Sbjct: 65  RERLEIAIEKRLQTADEHL--------------------KRFLQEQLLLLPAANISTIDA 104

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEI 195
           +   +++ +     +   F +  +   + ++ +     L ++  D  EE       F  +
Sbjct: 105 YALRLIENYYHVIGLDPQFRLLSDTAERDMLRQ---DVLNNVFSDFYEETHVQHANFLAL 161

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYL----WRRKIIEKSLWS 240
           +    D   +  + +I+     LKL  F  +      W + + E  L  
Sbjct: 162 VTNFGDPTHDDQLQNIV-----LKLADFAEARPDGSAWLQSLREDDLTH 205


>gi|303253078|ref|ZP_07339228.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307248354|ref|ZP_07530377.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302648063|gb|EFL78269.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306855092|gb|EFM87272.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 732

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E ++A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +++ SH                                    
Sbjct: 60  VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+A++   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122


>gi|258620540|ref|ZP_05715577.1| DNA helicase II [Vibrio mimicus VM573]
 gi|258587055|gb|EEW11767.1| DNA helicase II [Vibrio mimicus VM573]
          Length = 534

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++                                        T  
Sbjct: 63  FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +  ++L+    K  + +  LD+ +   
Sbjct: 85  GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           +     +    DE + 
Sbjct: 141 RQVAWWINNQKDEGLR 156


>gi|254491461|ref|ZP_05104640.1| UvrD/REP helicase domain protein [Methylophaga thiooxidans DMS010]
 gi|224462939|gb|EEF79209.1| UvrD/REP helicase domain protein [Methylophaga thiooxydans DMS010]
          Length = 723

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 45/220 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE ++ +++ + E + A  P   A + A AGSGKT +LV R+  L+   +  P+ +L 
Sbjct: 2   DVSELLNDLNKPQREAVAA--PLGHARILAGAGSGKTRVLVHRIAWLIQAEDFSPANILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ +I+                                         
Sbjct: 60  VTFTNKAAAEMRGRIEDILGYP-------------------------------------- 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           PGG+ V T H     +++    +A++   F I D +   ++I+   +    ++ LD  + 
Sbjct: 82  PGGMWVGTFHGLAHRLLRSHWKDADLPQSFQILDSDDQLRMIKRIVR----AMELDEAQW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +    DE +        ++  + K++  + +Y
Sbjct: 138 PPKQAQWYINGQKDEGLRAKDIQAGNDPYSQKMLAIYQAY 177


>gi|52629180|gb|AAU27921.1| DNA dependent ATPase I and helicase II [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 730

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++   + P  +  V A AGSGKT +LV R+  L+   +  P  +L +T T  AA EM
Sbjct: 20  NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 79

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +++  +                                       GL V T H 
Sbjct: 80  RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 101

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++++   EAN+   F I D E   ++I    K  + S+ LD  +   K     +  
Sbjct: 102 LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 157

Query: 199 SNDEDIE 205
             DE + 
Sbjct: 158 KKDEGLR 164


>gi|104784398|ref|YP_610896.1| DNA-dependent helicase II [Pseudomonas entomophila L48]
 gi|95113385|emb|CAK18113.1| DNA-dependent ATPase I and helicase II [Pseudomonas entomophila
           L48]
          Length = 727

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 44/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
             Q +A+   R   V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 17  QRQAVAAQVGRQ-LVLAGAGSGKTRVLVHRIAWLIQVVQASPHSILSVTFTNKAAAEMRH 75

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 76  RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +  +F I D +  ++LI    K  +  + LD  +   +     +    
Sbjct: 98  HRLLRAHWQEAGLAQNFQILDSDDQQRLI----KRVIREMGLDEQKWPARQVQWFINGQK 153

Query: 201 DEDIE 205
           DE + 
Sbjct: 154 DEGLR 158


>gi|209542394|ref|YP_002274623.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530071|gb|ACI50008.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 760

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 44/192 (22%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D + +   EQ  A + T     V A AG+GKT +L  R   +LL+  A P  +L +T T 
Sbjct: 35  DYLQRLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPYQILAVTFTN 94

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                           GL 
Sbjct: 95  KAAREMRERIGALLGEPVE--------------------------------------GLW 116

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  ++++      + S F I D +   +L+++     +  + +D      +  
Sbjct: 117 LGTFHALCARMLRRHAEYVGLGSGFTILDTDDQLRLLKQ----VIEPLRIDTKRWPPQGI 172

Query: 193 YEILEISNDEDI 204
             +++   D  +
Sbjct: 173 LGVIQRWKDRGL 184


>gi|162147772|ref|YP_001602233.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786349|emb|CAP55931.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
          Length = 743

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 44/192 (22%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D + +   EQ  A + T     V A AG+GKT +L  R   +LL+  A P  +L +T T 
Sbjct: 18  DYLQRLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPYQILAVTFTN 77

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                           GL 
Sbjct: 78  KAAREMRERIGALLGEPVE--------------------------------------GLW 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  ++++      + S F I D +   +L+++     +  + +D      +  
Sbjct: 100 LGTFHALCARMLRRHAEYVGLGSGFTILDTDDQLRLLKQ----VIEPLRIDTKRWPPQGI 155

Query: 193 YEILEISNDEDI 204
             +++   D  +
Sbjct: 156 LGVIQRWKDRGL 167


>gi|332039917|gb|EGI76310.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624]
          Length = 1133

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 14/208 (6%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-----ANAHPSTLLCLTHTKAAAAEMS 79
            +A DP R   V A AG+GKT +LV R+LR LL       A    +L +T TK AA EM 
Sbjct: 21  AIACDPRRHVAVEACAGAGKTWMLVSRILRALLGEQGDDGAQAHEILAITFTKKAAGEMR 80

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHA 138
            R+ E ++A++   D+ L AE+     ++     + +  R L + +L+    ++++T H+
Sbjct: 81  QRLTEWLSAFACYDDDQLRAELRARGVEQARVDVLIAPLRGLHLRLLQQGRAVQIRTFHS 140

Query: 139 FCEAIMQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192
           +  A+++  PL    E  + + + + + +   ++  +  +   A ++ + ++   +   +
Sbjct: 141 WFAALLRNAPLAVLEELGLPAAYELLENDD--EVKAQVWRPFHARLLREQDQGGTVLADY 198

Query: 193 YEILEISNDEDIETLISDIISNRTALKL 220
             ++        E  +  ++  R    L
Sbjct: 199 QAVVSRHGRSQTEKALEAVLDKRVEFAL 226


>gi|229844857|ref|ZP_04464995.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1]
 gi|229812238|gb|EEP47929.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1]
          Length = 726

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQREAVAA--PIGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123


>gi|307610545|emb|CBX00132.1| DNA helicase II [Legionella pneumophila 130b]
          Length = 721

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++   + P  +  V A AGSGKT +LV R+  L+   +  P  +L +T T  AA EM
Sbjct: 11  NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +++  +                                       GL V T H 
Sbjct: 71  RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++++   EAN+   F I D E   ++I    K  + S+ LD  +   K     +  
Sbjct: 93  LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 148

Query: 199 SNDEDIE 205
             DE + 
Sbjct: 149 KKDEGLR 155


>gi|317182762|dbj|BAJ60546.1| helicase [Helicobacter pylori F57]
          Length = 938

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 12/178 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK--------ARHLLITILETPGGLKVQTIHAFCEA 142
             + E    +       K  +             A+ +    L     +++ TI AF ++
Sbjct: 65  KENLENEKEKEKSQNILKELEEKYRLDPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           I+++F     ++++F +   E +K   ++  +S L+++     EEL     + L   +
Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNESFLSALNNKQLEELSVFIAQCLSYDS 178


>gi|239815308|ref|YP_002944218.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239801885|gb|ACS18952.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 1087

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 15/205 (7%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----AHPSTLLCLTHTKAAAAEMSHR 81
           +A DP RS  V A AG+GKT +LV R+LR LL        P  +L +T TK AA EM  R
Sbjct: 21  VACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGESACEPHEILAITFTKKAAGEMRER 80

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS--KARHLLITILETPGGLKVQTIHAF 139
           + + +  ++  S E L  E+  I+G +P+ +  +  + + L   +LE    ++ +T HA+
Sbjct: 81  LDQWLEQFAERSPEELVRELV-IRGVEPDAALAAVPRLQGLYRRLLEGGRPVQFRTFHAW 139

Query: 140 CEAIMQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
              +++  PL    E  + +++ + +++   +      +    ++  D  +E    +Y +
Sbjct: 140 FAGLLRNAPLAVLRELGLPANYELLEDDAEAR--SRTWRPFFEAVTAD--KEALADYYAV 195

Query: 196 LEISNDEDIETLISDIISNRTALKL 220
           +           + + ++ R    L
Sbjct: 196 VATYGRSQTAKALGEALTRRVEFSL 220


>gi|54297755|ref|YP_124124.1| DNA-dependent helicase II [Legionella pneumophila str. Paris]
 gi|148359389|ref|YP_001250596.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str.
           Corby]
 gi|296107435|ref|YP_003619135.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53751540|emb|CAH12958.1| DNA helicase II [Legionella pneumophila str. Paris]
 gi|148281162|gb|ABQ55250.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str.
           Corby]
 gi|295649336|gb|ADG25183.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 721

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++   + P  +  V A AGSGKT +LV R+  L+   +  P  +L +T T  AA EM
Sbjct: 11  NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +++  +                                       GL V T H 
Sbjct: 71  RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++++   EAN+   F I D E   ++I    K  + S+ LD  +   K     +  
Sbjct: 93  LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 148

Query: 199 SNDEDIE 205
             DE + 
Sbjct: 149 KKDEGLR 155


>gi|77359094|ref|YP_338669.1| DNA-dependent helicase II [Pseudoalteromonas haloplanktis TAC125]
 gi|76874005|emb|CAI85226.1| DNA-dependent ATPase I and helicase II; highly similar to
           PSHA_1_2804 [Pseudoalteromonas haloplanktis TAC125]
          Length = 721

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +D ++  + + + A  P ++  V A AGSGKT +LV R+  L+ +  A   ++  
Sbjct: 2   DVSQLLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASTYSIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV E + A                                       
Sbjct: 60  VTFTNKAAKEMRTRVEETLKAPV------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     I++    EA +   F I D +   ++I    K  L S+ +D+ + 
Sbjct: 83  -GGMWIGTFHGLSHRILRAHHREAKLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K F   +    DE + 
Sbjct: 138 PAKQFGWYISAKKDEALR 155


>gi|85711578|ref|ZP_01042636.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145]
 gi|85694730|gb|EAQ32670.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145]
          Length = 724

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 45/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
            I  +++ ++  + A D  R   V A AGSGKT +LV R+  L+      P ++L +T T
Sbjct: 6   LISGLNEKQATAVSADD--RPMLVLAGAGSGKTRVLVHRIAWLIQERRYSPYSILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA+EM  RV +++ +                                          +
Sbjct: 64  NKAASEMRGRVEQLLGSSVR--------------------------------------NM 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H     +++   ++  +  +F I D +  ++L     K  + S+ LD      K 
Sbjct: 86  WIGTFHGLAHRLLRAHYMDVGLPQNFQILDSDDQQRL----VKRLIKSMNLDEKRWPAKQ 141

Query: 192 FYEILEISNDEDIET 206
               +    DE +  
Sbjct: 142 AQWYINGKKDEGLRA 156


>gi|54294730|ref|YP_127145.1| DNA-dependent helicase II [Legionella pneumophila str. Lens]
 gi|53754562|emb|CAH16046.1| DNA helicase II [Legionella pneumophila str. Lens]
          Length = 721

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++   + P  +  V A AGSGKT +LV R+  L+   +  P  +L +T T  AA EM
Sbjct: 11  NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +++  +                                       GL V T H 
Sbjct: 71  RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++++   EAN+   F I D E   ++I    K  + S+ LD  +   K     +  
Sbjct: 93  LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 148

Query: 199 SNDEDIE 205
             DE + 
Sbjct: 149 KKDEGLR 155


>gi|213968510|ref|ZP_03396653.1| DNA helicase II [Pseudomonas syringae pv. tomato T1]
 gi|301384752|ref|ZP_07233170.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato Max13]
 gi|302133168|ref|ZP_07259158.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213926798|gb|EEB60350.1| DNA helicase II [Pseudomonas syringae pv. tomato T1]
 gi|330878141|gb|EGH12290.1| DNA-dependent helicase II [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330964448|gb|EGH64708.1| DNA-dependent helicase II [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 727

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + + + AS   +   V A AGSGKT +LV R+  L+ +  A P ++L 
Sbjct: 4   DLSVLLNSLNDAQRQAVAASLGRQ--LVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLS 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 62  VTFTNKAAAEMRHRIEQLMGI--------------------------------------S 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P G+ V T H     +++    EA +   F I D +  ++L     K  +  + LD    
Sbjct: 84  PAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PARQAQWFINGQKDEGLR 157


>gi|296115176|ref|ZP_06833817.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978277|gb|EFG85014.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 747

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 44/192 (22%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +++   EQ  A + T     V A AG+GKT +L  R   +LL+  A P+ +L +T T 
Sbjct: 17  DYLARLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPNQILAVTFTN 76

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++ A                                         GL 
Sbjct: 77  KAAREMRERVAGLLGAPVE--------------------------------------GLW 98

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  ++++      ++  F I D +   +L+++     +    +D      +  
Sbjct: 99  LGTFHSLCARMLRRHAEYVGLSGSFTILDTDDQVRLLKQ----VIEPRHIDTKRWPPQGI 154

Query: 193 YEILEISNDEDI 204
             +++   D  +
Sbjct: 155 MGVIQRWKDRGL 166


>gi|328542978|ref|YP_004303087.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1]
 gi|326412724|gb|ADZ69787.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1]
          Length = 812

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ  A +       V A AG+GKT +L  R+  +L +  A PS +L +T T 
Sbjct: 44  DYLAGLNPEQRQAVETIDGPVLVLAGAGTGKTRVLTTRIAHILSSGRAWPSQILAVTFTN 103

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                          G   
Sbjct: 104 KAAREMRERIGHLIGG-------------------------------------NVDGMAW 126

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I+++      ++S F+I D +   +L+++     + +  LD+     +AF
Sbjct: 127 LGTFHSICVKILRRHAELVGLSSGFSILDTDDQLRLMKQ----VIQAEGLDDKRWTARAF 182

Query: 193 YEILEISNDEDI 204
             +++   +  +
Sbjct: 183 ASLVDGWKNRAL 194


>gi|91788136|ref|YP_549088.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91697361|gb|ABE44190.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 1095

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 107/241 (44%), Gaps = 29/241 (12%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           ++++ +++ + E I   +       +A +P RS  V A AG+GKT +LV R++R LL  A
Sbjct: 3   VVHYAAYECNGEPISADAFY----AIACNPRRSVAVEACAGAGKTWMLVSRIVRALLDGA 58

Query: 61  --------HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT---------K 103
                    P  +L +T TK AA EM  R+ + + A+ H  D  L  E+           
Sbjct: 59  GGGPDAQVRPHEILAITFTKKAAGEMRERLDDWLKAFVHADDATLQRELEMRGVRFGDSS 118

Query: 104 IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL----EANITSHFAI 159
            +G K       +  +L  +IL +   ++++T H++  A+++  P+       +  ++ +
Sbjct: 119 EKGLKAALEMRKQLSNLYRSILASGRSVQIRTFHSWFAALLRSAPVAVLQRLGLPVNYEL 178

Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALK 219
            +++   + +    +   A++   ++  LK  F  ++        +  +   +  RT   
Sbjct: 179 LEDDAPARAL--VWRRFYATVAASDS--LKADFEAVVLAHGRFQADKALQTALDKRTEFT 234

Query: 220 L 220
           L
Sbjct: 235 L 235


>gi|154707778|ref|YP_001424668.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway
           5J108-111]
 gi|154357064|gb|ABS78526.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway
           5J108-111]
          Length = 1110

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +  A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R++
Sbjct: 7   RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +            ++  K       +  + + +H    +   P  L++ TI A    I
Sbjct: 67  AALNEAQTQPA---PSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201
             Q P+     +  +  + E+  +   EA      S      EE      E+L   ++  
Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRLFES------EEHADTIEELLLHLDNKA 177

Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241
           E +ETL+  ++  R      +I  + +    +  +EK+L +I
Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219


>gi|161723247|ref|YP_095868.2| DNA-dependent helicase II [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 721

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++   + P  +  V A AGSGKT +LV R+  L+   +  P  +L +T T  AA EM
Sbjct: 11  NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +++  +                                       GL V T H 
Sbjct: 71  RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++++   EAN+   F I D E   ++I    K  + S+ LD  +   K     +  
Sbjct: 93  LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 148

Query: 199 SNDEDIE 205
             DE + 
Sbjct: 149 KKDEGLR 155


>gi|331017795|gb|EGH97851.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 727

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + + + AS   +   V A AGSGKT +LV R+  L+ +  A P ++L 
Sbjct: 4   DLSVLLNSLNDAQRQAVAASLGRQ--LVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLS 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 62  VTFTNKAAAEMRHRIEQLMGI--------------------------------------S 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P G+ V T H     +++    EA +   F I D +  ++L     K  +  + LD    
Sbjct: 84  PAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PARQAQWFINGQKDEGLR 157


>gi|255590468|ref|XP_002535279.1| conserved hypothetical protein [Ricinus communis]
 gi|223523578|gb|EEF27105.1| conserved hypothetical protein [Ricinus communis]
          Length = 436

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L+  T + Q        S  V A AG+GKT +L QR L+LL     P  ++ +T T  AA
Sbjct: 7   LLEDTLNRQRALE--LESFIVEAPAGAGKTELLTQRYLKLLAVVNEPEEIVAITFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  RVL+ +   +   D I   +  K   ++     ++++  L   +L  PG L++ T
Sbjct: 65  AEMRSRVLQSLQDAA---DAIPIDKPHKQTTRELALHALARSAELGWDLLAQPGRLRINT 121

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +    + +Q PL +   +  A++++     L  EA + TLA +    +E    A  E 
Sbjct: 122 IDSLSSNLARQMPLMSRFGAQPAVSEDVGVHYL--EAARRTLAML---EDEGGNGAVTEA 176

Query: 196 LEISNDEDIE--TLISDIISNRTAL 218
           L   +++ +    L++++++ R   
Sbjct: 177 LRYLDNDTVRLSNLLAEMLARRDQW 201


>gi|212212385|ref|YP_002303321.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010795|gb|ACJ18176.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212]
          Length = 1110

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +  A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R++
Sbjct: 7   RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +            ++  K       +  + + +H    +   P  L++ TI A    I
Sbjct: 67  AALNEAQTQPA---PSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201
             Q P+     +  +  + E+  +   EA      S      EE      E+L   ++  
Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRFFES------EEHADTIEELLLHLDNKA 177

Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241
           E +ETL+  ++  R      +I  + +    +  +EK+L +I
Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALATI 219


>gi|161830545|ref|YP_001597082.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331]
 gi|161762412|gb|ABX78054.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331]
          Length = 1110

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +  A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R++
Sbjct: 7   RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +            ++  K       +  + + +H    +   P  L++ TI A    I
Sbjct: 67  AALNEAQTQPA---PSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201
             Q P+     +  +  + E+  +   EA      S      EE      E+L   ++  
Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRFFES------EEHADTIEELLLHLDNKA 177

Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241
           E +ETL+  ++  R      +I  + +    +  +EK+L +I
Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219


>gi|29654533|ref|NP_820225.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493]
 gi|29541800|gb|AAO90739.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493]
          Length = 1110

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +  A DP +S  V A AGSGKT +L+QR L+LL     P  ++ +T T+ AAAEM  R++
Sbjct: 7   RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +            ++  K       +  + + +H    +   P  L++ TI A    I
Sbjct: 67  AALNEAQTQPA---PSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201
             Q P+     +  +  + E+  +   EA      S      EE      E+L   ++  
Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRFFES------EEHADTIEELLLHLDNKA 177

Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241
           E +ETL+  ++  R      +I  + +    +  +EK+L +I
Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219


>gi|163815442|ref|ZP_02206815.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759]
 gi|158449079|gb|EDP26074.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759]
          Length = 1303

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 37/233 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------------ANAHPST 64
           IS TK +  +      +  V+A AGSGKT +LV+R++ ++L               +   
Sbjct: 6   ISWTKQQAHVIDTRIGNLLVAAAAGSGKTAVLVERIIEMVLGVDSNGNKLPDQDRVNVDE 65

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T AAAA+M  ++              L  +I +          + K   L+   
Sbjct: 66  LLVVTFTNAAAAQMKEKI-----------SAALQKKIDEYMANGIYDEHLIKQMTLI--- 111

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                  ++ TI +FC  I++++  +  + S F IAD+ + + + ++     + S   D 
Sbjct: 112 ----NHAEICTIDSFCLHIVKEYFAKVQLDSAFDIADKTEMEIIKKDVMDKVMESCYQDE 167

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           N  L   F +++     ++ +T +  ++++     L+    SY  R   I  +
Sbjct: 168 N--LVPGFIKLVRTFAVKERDTEVPALVTH-----LMQVISSYPDRHGWIRDA 213


>gi|315585943|gb|ADU40324.1| helicase [Helicobacter pylori 35A]
          Length = 949

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 12/178 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK--------ARHLLITILETPGGLKVQTIHAFCEA 142
             + E    +       K  +             A+ +    L     +++ TI AF ++
Sbjct: 65  KENLENEKEKEKSQNILKELEEKYRLDPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           I+++F     ++++F +   E +K   ++  +S L+++     EEL     + L   +
Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAYQQQLNESFLSALNNKQLEELSVFIAQCLSYDS 178


>gi|300742291|ref|ZP_07072312.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567]
 gi|300381476|gb|EFJ78038.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567]
          Length = 844

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ID ++  + E +L +       + A AGSGKT +L  R+  LL    A P  +L +T T
Sbjct: 1   MIDGLNDRQREAVLHA--GSPLLIVAGAGSGKTRVLTHRIAHLLATGRATPGQILAITFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  +I                             +A+H           +
Sbjct: 59  NKAAAEMRERIQALIG---------------------------PRAQH-----------M 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+FC  ++++      + S F I D   S++L+    K  
Sbjct: 81  WISTFHSFCVRVLRREAKALGLKSTFTIYDSADSQRLLTLIIKEL 125


>gi|28872621|ref|NP_795240.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855877|gb|AAO58935.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 727

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + + + AS   +   V A AGSGKT +LV R+  L+ +  A P ++L 
Sbjct: 4   DLSVLLNSLNDAQRQAVAASLGRQ--LVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLS 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ +++                                        +
Sbjct: 62  VTFTNKAAAEMRHRIEQLMGI--------------------------------------S 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P G+ V T H     +++    EA +   F I D +  ++L     K  +  + LD    
Sbjct: 84  PAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQLW 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 140 PARQAQWFINGQKDEGLR 157


>gi|329121403|ref|ZP_08250028.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister
           micraerophilus DSM 19965]
 gi|327469693|gb|EGF15160.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister
           micraerophilus DSM 19965]
          Length = 1285

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 27/221 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T S+         +  +SA AGSGKT +LV+R++R +     P   + LL LT TKAAA
Sbjct: 6   WTSSQSEALKSRNCNLLLSAAAGSGKTAVLVERIIRRITDLDDPTDVTDLLVLTFTKAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  RV   +                     K  K    K    L   +    G +  T
Sbjct: 66  SEMKSRVTIALNNALS----------------KAAKEHNEKLVMHLHKQIALMSGAQFST 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           + +F   I++Q+    NI    +I + ++   L+++     L+ I+        K F   
Sbjct: 110 LDSFFLGIVRQYFYLINIPPDISIINNQKELYLMQQ---EILSEILEKYYSSNDKDFLNC 166

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            ++   +  +T + +II     LKL  F  S  +  + +  
Sbjct: 167 ADMFAGKFRDTKLKEII-----LKLYTFSCSMPFPEEWLNS 202


>gi|189499756|ref|YP_001959226.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
 gi|189495197|gb|ACE03745.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
          Length = 735

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 39/166 (23%)

Query: 13  TIDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
            ID++ Q    +Q           V A AGSGKT ++  R+  L+      P  +L LT 
Sbjct: 1   MIDILEQLNDVQQQAVQKTDGPVMVLAGAGSGKTRVITYRLAYLIGQKQVAPHQILALTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ E++   S                                       G
Sbjct: 61  TNKAANEMRQRIDELLHPGSSR-------------------------------------G 83

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L + T H+    +++ +        +F+I D + SK LI +  K  
Sbjct: 84  LWIGTFHSIFARLLRNYIHLIGYDGNFSIYDSDDSKSLIRQVMKEL 129


>gi|253998950|ref|YP_003051013.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253985629|gb|ACT50486.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 1137

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 16/228 (7%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L++Q    +  A +   S  V A AG+GKT +L QR L+LL     P  ++ +T T  AA
Sbjct: 12  LLAQDDESRRRALE-LESFIVEAPAGAGKTELLTQRYLKLLTTVREPEEIIAITFTNKAA 70

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+L+ +             ++ K       +  +  A      +LE P  L++ T
Sbjct: 71  AEMRARILDSL---LMADSGERPPQLHKQMTFALGQDALQHAAERGWHLLENPARLRIFT 127

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +    + +Q PL +   +  A+   E +    + A + TL     D  +    A  + 
Sbjct: 128 IDSLSSHLARQMPLMSRFGAQPAVT--EDASAYYQLAAERTL-----DLADGSSDAVTQA 180

Query: 196 LEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           L   +++ +    L++D+++ R          +    R++ E +L  +
Sbjct: 181 LRYVDNDSLRLTQLLADMLAKRDQWLPYA---NRTDTRELAEAALQHL 225


>gi|86135193|ref|ZP_01053775.1| UvrD/REP helicase [Polaribacter sp. MED152]
 gi|85822056|gb|EAQ43203.1| UvrD/REP helicase [Polaribacter sp. MED152]
          Length = 1047

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 6/186 (3%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMS 79
           ++L+   P      +A+AGSGKT  LV+  L++LL+         +L +T T  AA EM 
Sbjct: 3   KKLVVQKPEIFEVYNASAGSGKTFTLVKEYLKVLLSADDIFTFQKILAITFTNKAAGEMK 62

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RVL  + +++   +  L   I+           + +++ ++  IL+      + TI +F
Sbjct: 63  ERVLSNLESFAEGEENDLFTIISNEIAVDKETIQV-RSKKIIDVILQNYSAFSITTIDSF 121

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              I++ F  +  ++ +F +  E  +  L+ EA    ++ I  D         Y + +I 
Sbjct: 122 THKIIKSFAYDLGLSLNFEV--EMDAVSLLNEAVDVLISKIGTDKKLTKLLIDYSLDKID 179

Query: 200 NDEDIE 205
           +D+  +
Sbjct: 180 DDKSWD 185


>gi|313891437|ref|ZP_07825053.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII
           345-E]
 gi|313120212|gb|EFR43388.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII
           345-E]
          Length = 1283

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 27/221 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T S+         +  +SA AGSGKT +LV+R++R +     P   + LL LT TKAAA
Sbjct: 6   WTSSQSEALKSRNCNLLLSAAAGSGKTAVLVERIIRRITDLDDPTDVTDLLVLTFTKAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  RV   +                     K  K    K    L   +    G +  T
Sbjct: 66  SEMKSRVTIALNNALS----------------KAAKEHNEKLVMHLHKQIALMSGAQFST 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           + +F   I++Q+    NI    +I + ++   L+++     L+ I+        K F   
Sbjct: 110 LDSFFLGIVRQYFYLINIPPDISIINNQKELYLMQQ---EILSEILEKYYSSNDKDFLNC 166

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            ++   +  +T + +II     LKL  F  S  +  + +  
Sbjct: 167 ADMFAGKFRDTKLKEII-----LKLYTFSCSMPFPEEWLNS 202


>gi|68249734|ref|YP_248846.1| DNA-dependent helicase II [Haemophilus influenzae 86-028NP]
 gi|68057933|gb|AAX88186.1| DNA helicase II [Haemophilus influenzae 86-028NP]
          Length = 727

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + + + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DISELLDGLNDKQRKAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 87  LVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124


>gi|325843353|ref|ZP_08167936.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1]
 gi|325489382|gb|EGC91755.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1]
          Length = 1198

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 24/225 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAA 76
           +    +            +SA AGSGKT +LV+R++ +++    +   LL +T T+AAAA
Sbjct: 12  TWNDEQWEAIYRKGEDLLISAGAGSGKTAVLVERMIQKIIQEKLNIDELLVMTFTEAAAA 71

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   I                    K+P    +          L       + T 
Sbjct: 72  EMKQRMRSRI---------------QDELEKQPYNEHLKVQ-------LNKISQSHISTF 109

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFC  +++++     +   F IAD+ +   + +E  +S    +  D +E       +  
Sbjct: 110 HAFCNKLIKRYYYLLELDPVFKIADDIEVGIIQDEVVESLFDDLSDDEDESYLLLSRQFN 169

Query: 197 EISNDEDIETLISDIIS-NRTALKLIFFFFSYLWRRKIIEKSLWS 240
              NDE+++ ++  I    R+  ++I +  +     +  E+ L S
Sbjct: 170 NDRNDENLKVMLLKIYELARSNPEMIQWLENLPHLYQWDEQDLMS 214


>gi|270157153|ref|ZP_06185810.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968]
 gi|289164442|ref|YP_003454580.1| UvrD/REP helicase family protein [Legionella longbeachae NSW150]
 gi|269989178|gb|EEZ95432.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968]
 gi|288857615|emb|CBJ11455.1| putative UvrD/REP helicase family protein [Legionella longbeachae
           NSW150]
          Length = 1084

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L+  T+  Q  A+DP+ S  V A AGSGKT IL QR LRLL     P  ++ LT T+ AA
Sbjct: 2   LVDSTQRSQ--ATDPSLSYIVQAPAGSGKTEILTQRYLRLLSTVKAPEQIVALTFTRKAA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+L  +   ++        +   +         +    H    +L+ PG L+V T
Sbjct: 60  SEMRERILLALQQAANHQPANSPHQQMTLDFADKA---LHSDAHYQWNLLQQPGRLRVIT 116

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I + C++I Q  PL     ++  I D+  S  L   A +  +   M     + ++A   +
Sbjct: 117 IDSLCQSINQAIPLLEKQIAYAQITDKTSSHYL--NAGRHCIQYAMATP--QYQEAIKTL 172

Query: 196 LEISNDEDIE--TLISDIISNRTAL 218
           L   ++       L S+++S R   
Sbjct: 173 LLHVDNRQDRLLDLFSELLSQRDQW 197


>gi|148978468|ref|ZP_01814942.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3]
 gi|145962375|gb|EDK27655.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3]
          Length = 724

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L  +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++   S                                       
Sbjct: 63  FTNKAAAEMRGRIEELMMGSS--------------------------------------S 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +   +L+    +  + +  LD  +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL----RRLIKAQNLDEKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           K     +    DE + 
Sbjct: 141 KQASWWINGKKDEGLR 156


>gi|86148257|ref|ZP_01066553.1| DNA helicase II [Vibrio sp. MED222]
 gi|218710970|ref|YP_002418591.1| DNA-dependent helicase II [Vibrio splendidus LGP32]
 gi|85833953|gb|EAQ52115.1| DNA helicase II [Vibrio sp. MED222]
 gi|218323989|emb|CAV20351.1| DNA helicase II [Vibrio splendidus LGP32]
          Length = 724

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L  +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++   S                                       
Sbjct: 63  FTNKAAAEMRGRIEELMMGSS--------------------------------------S 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +   +L+    +  + +  LD  +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL----RRLIKAQNLDEKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           K     +    DE + 
Sbjct: 141 KQASWWINGKKDEGLR 156


>gi|220931077|ref|YP_002507985.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
 gi|219992387|gb|ACL68990.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
          Length = 715

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 44/197 (22%)

Query: 11  SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           S++ D+++    EQ  A +       + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 3   SDSSDILTGLNPEQKKAVEHFEGPLLILAGAGSGKTRVLTHRIAYLIENYGVNPLQILAV 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  ++   +                                      
Sbjct: 63  TFTNKAAGEMKERVDNLLGGMA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G L V T H+ C  I+++   +    ++F I D +  +KLI       L  + LD  +  
Sbjct: 85  GDLWVSTFHSLCARILRKEIGKIGYDNNFVIFDTDDQQKLIS----RILKELNLDPKKTR 140

Query: 189 KKAFYEILEISNDEDIE 205
            +A    +  + +E I+
Sbjct: 141 PRAILSEISRAKNELID 157


>gi|84393655|ref|ZP_00992406.1| DNA helicase II [Vibrio splendidus 12B01]
 gi|84375723|gb|EAP92619.1| DNA helicase II [Vibrio splendidus 12B01]
          Length = 724

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 45/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L  +  A P +++ +T
Sbjct: 5   SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R+ E++   S                                       
Sbjct: 63  FTNKAAAEMRGRIEELMMGSS--------------------------------------S 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+   T H  C  I++   L+A +   F I D +   +L+    +  + +  LD  +   
Sbjct: 85  GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL----RRLIKAQNLDEKQWPA 140

Query: 190 KAFYEILEISNDEDIE 205
           K     +    DE + 
Sbjct: 141 KQASWWINGKKDEGLR 156


>gi|172040209|ref|YP_001799923.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851513|emb|CAQ04489.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 1022

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L++    +Q  A   T S   + A AGSGKT +L +R+  LL     P  +L +T T  A
Sbjct: 164 LLAGLNPQQKEAVQHTGSPLLIVAGAGSGKTSVLTRRIAWLLSTGVAPWQILAITFTNKA 223

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +                                        + V 
Sbjct: 224 AAEMRERVADLVGPAAE--------------------------------------RMWVS 245

Query: 135 TIHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I++      A + ++F I D + SK+LI    K 
Sbjct: 246 TFHSMCVRILRSNAHLVAGLNTNFTIYDSDDSKRLITMVIKD 287


>gi|329894799|ref|ZP_08270599.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC3088]
 gi|328922693|gb|EGG30027.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC3088]
          Length = 715

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E + A     +A V A AGSGKT +LV R+  L+      P +LL 
Sbjct: 2   DVTELLDGLNPAQREAVAAE--PGNALVLAGAGSGKTRVLVHRIAWLIRAEGFSPQSLLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R   ++   +H                                    
Sbjct: 60  VTFTNKAAKEMRGRTESMLGLSTH------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G  V T H     +++    EA +  +F I D +   +L++   K     + LD+   
Sbjct: 84  --GFWVGTFHGLAHRLLKAHWREAGLQQNFQILDSDDQLRLVKRIVK----ELGLDDGRW 137

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    DE +  
Sbjct: 138 PPKQIQGFVNAQKDEGLRA 156


>gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans]
 gi|133737857|emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB
           [Herminiimonas arsenicoxydans]
          Length = 1096

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 4/219 (1%)

Query: 2   IYHNSFQEHSETIDLISQTKSE-QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           ++ N+    +  I+ +         +A DP RS  V A AGSGKT +LV RVLRLLLA  
Sbjct: 4   LHINTSAPRAYEINGVQADAERFVAIACDPARSVVVEACAGSGKTWLLVARVLRLLLAGT 63

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN-KSDMSKARH 119
            P+ +L +T T+ AA EM  R+++++   +   +  +   + +         + +  AR 
Sbjct: 64  EPAAILAITFTRKAAQEMRERLMQLLHELTLKPEADVLTLLRERGVADHELLALLPLARG 123

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           L   +L +P  L + T H++   ++Q  PL + +   +A+ +   + +L  +A    + +
Sbjct: 124 LYERVLRSPQALSIDTFHSWFARLVQIAPLASGVPHGYALTES--TGELSSDAYSRFMQT 181

Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
           +   +N+E+K A   +     D +   L+      R   
Sbjct: 182 VNEADNQEVKDALIALYAQVGDSNARNLLDAFAGKRAEW 220


>gi|148951|gb|AAC36867.1| DNA helicase II [Haemophilus influenzae]
 gi|739972|prf||2004269A DNA helicase II
          Length = 727

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 3   DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 61  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 87  LFGMWIGTFHSIARRLLRAHHLDVGLPQDFQILDSEDQ 124


>gi|88811284|ref|ZP_01126540.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231]
 gi|88791823|gb|EAR22934.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231]
          Length = 736

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 45/200 (22%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPS 63
           ++  + S  ID ++  + E + A  P     V A AGSGKT +L  R   LL    A   
Sbjct: 9   SAIVDSSNLIDSLNAAQREAVTA--PCGRTLVLAGAGSGKTRVLTHRAAWLLQAEEASAY 66

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           ++L +T T  AAAEM  R+  ++   +                                 
Sbjct: 67  SILAVTFTNKAAAEMRGRIAGLVGIAA--------------------------------- 93

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                GG+ + T H     +++    EA +  HF I D E  ++LI    + TL ++ +D
Sbjct: 94  -----GGMWIGTFHGLAHRLLRLHWREAGLPQHFQILDAEDQRRLI----RRTLRNLEID 144

Query: 184 NNEELKKAFYEILEISNDED 203
            +    +     +    DE 
Sbjct: 145 ESRWPPRQIQGFINARKDEG 164


>gi|145631236|ref|ZP_01787009.1| DNA helicase II [Haemophilus influenzae R3021]
 gi|144983163|gb|EDJ90658.1| DNA helicase II [Haemophilus influenzae R3021]
          Length = 726

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2   DISELLDGLNDKQHEAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                                     
Sbjct: 60  VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ + T H+    +++   L+  +   F I D E  
Sbjct: 86  LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123


>gi|120556547|ref|YP_960898.1| DNA-dependent helicase II [Marinobacter aquaeolei VT8]
 gi|120326396|gb|ABM20711.1| ATP-dependent DNA helicase UvrD [Marinobacter aquaeolei VT8]
          Length = 726

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ID ++  + E + A        V A AGSGKT +LV R+  L+ +    P+++L 
Sbjct: 7   DVSHIIDSLNDAQREAVTAQ--NDHLLVLAGAGSGKTRVLVHRMAWLMSVDRVPPTSILA 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM +RV +++   +                                     
Sbjct: 65  VTFTNKAAKEMRYRVEQMMQIPTR------------------------------------ 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             GL + T H     +++    +A +  +F + D +   +LI+   +       +D ++ 
Sbjct: 89  --GLWIGTFHGIAHRLLRSHWKDAGLPENFQVLDSDDQLRLIKRVMREN----RIDESQW 142

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    DE +  
Sbjct: 143 PPKQAQWFINSQKDEGLRA 161


>gi|119943802|ref|YP_941482.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
 gi|119862406|gb|ABM01883.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
          Length = 723

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ID ++    ++   S P ++  V A AGSGKT +L  R+  L+ + N    ++L 
Sbjct: 2   DVSYLIDDLND--HQRAAVSAPEQNMLVLAGAGSGKTRVLTHRIAWLMQVENIPTYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ +I                                        + 
Sbjct: 60  VTFTNKAAKEMRGRITDICP--------------------------------------QQ 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ + T H     +++    EAN+   F I D +  KK+     K  + S+ LD    
Sbjct: 82  IGGMWIGTFHGTAHRLLRLHYQEANLPEQFQIIDSDDQKKM----VKRIIKSLNLDEKYY 137

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    DE +  
Sbjct: 138 PAKELQWYINDKKDEGLRA 156


>gi|53804812|ref|YP_113512.1| DNA-dependent helicase II [Methylococcus capsulatus str. Bath]
 gi|53758573|gb|AAU92864.1| DNA helicase II [Methylococcus capsulatus str. Bath]
          Length = 726

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 46/228 (20%)

Query: 11  SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
            +  D+I+     Q  A + P RS  V A AGSGKT +L+ R+  LL      P  +L +
Sbjct: 1   MDITDIIAPLNEAQREAVTAPDRSLLVLAGAGSGKTRVLIHRIAWLLRAEGVSPHAILAV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  ++   +                                      
Sbjct: 61  TFTNKAANEMKARLEALLDLSTR------------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             L V T H     ++++   +A +   F I D +   +LI    +  L ++ LD     
Sbjct: 84  -DLWVGTFHGLAHRLLRRHAADAGLHEGFQILDSDDQYRLI----RRLLKTLELDEARWP 138

Query: 189 KKAFYEILEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            +     +    D       L          ++ I+  +  L +R  +
Sbjct: 139 PRQIQWYINAQKDQGRRARNLPDSYDPFERQMRRIYLAYEELCQRSGL 186


>gi|311896487|dbj|BAJ28895.1| putative ATP-dependent DNA helicase PcrA [Kitasatospora setae
           KM-6054]
          Length = 885

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 48/233 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           ++ ++ ++  + E +L +       + A AGSGKT +L  R+  LL A    P  +L +T
Sbjct: 99  AQLLEGMNDPQREAVLHA--GSPLLIVAGAGSGKTRVLTHRIAHLLAARGVQPGEILAIT 156

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++   +                                       
Sbjct: 157 FTNKAAGEMRERVEALVGPRAK-------------------------------------- 178

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            + V T H+ C  I+++   +  + S F+I D   S++L+    +     + LD  +   
Sbjct: 179 AMWVSTFHSACVRILRREAKQLGMNSSFSIYDSADSQRLMALVCRD----LDLDPKQFPP 234

Query: 190 KAF-YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           K+F  +I  + N+   E   +D  SN T  KL   +  +L++R++ E +    
Sbjct: 235 KSFTSKISNLKNELIDEETYADQASNPTEKKLAEAY--FLYQRRLREANALDF 285


>gi|170718056|ref|YP_001785094.1| DNA-dependent helicase II [Haemophilus somnus 2336]
 gi|168826185|gb|ACA31556.1| DNA helicase II [Haemophilus somnus 2336]
          Length = 726

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 37/167 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLC 67
           + SE ++ +++ +   ++A  P  +  V A AGSGKT +L  R+  L      P  +++ 
Sbjct: 2   DISELLNDLNEKQRNAVVA--PLGNYLVLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR+   +  +SH                          + L       
Sbjct: 60  VTFTNKAATEMRHRIEATLARYSH--------------------------QRLF------ 87

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             G+ + T H+    +++    +A +   F I D E   +L++   K
Sbjct: 88  --GMWIGTFHSIANRLLRSHYADAGLPQDFQILDSEDQLRLVKRLMK 132


>gi|283457344|ref|YP_003361920.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133335|dbj|BAI64100.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 985

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + ++           + A AGSGKT +L  R+  LL  + A P  +L +T T  AAAEM
Sbjct: 144 NERQEEAVLHSGSPLLIVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAAAEM 203

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++                             +A+H           + + T H+
Sbjct: 204 RERIEALVG---------------------------PRAKH-----------MWISTFHS 225

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           FC  ++++      + S F I D   S++L+    K  
Sbjct: 226 FCVRVLRREAAALGLKSTFTIYDSTDSQRLLSLIIKEL 263


>gi|256380499|ref|YP_003104159.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827]
 gi|255924802|gb|ACU40313.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827]
          Length = 781

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +  +D ++   +++           V A AGSGKT +L +R+  LL    AHP  ++ +T
Sbjct: 17  ASLLDGLN--PAQRRAVEHAGSPLLVVAGAGSGKTRVLTRRIAHLLAERGAHPGEIMAIT 74

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV +++                             +AR           
Sbjct: 75  FTNKAAAEMKERVADLVG---------------------------PRARS---------- 97

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  ++++      I+S F+I D + +++LI    +  
Sbjct: 98  -MWVSTFHSMCVRLVRREHKALGISSSFSIYDSDDTRRLITLVARDL 143


>gi|73540567|ref|YP_295087.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134]
 gi|72117980|gb|AAZ60243.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134]
          Length = 786

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++   +EQL A   P   A + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3   DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                           G+ 
Sbjct: 63  KAAKEMQTRLSSMLPI--------------------------------------NTRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   FAI D +        A K  L ++ +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHFRDAGLPQTFAILDSQDQLS----ALKRLLKALNVDDEKYPAKNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     +     NR  + L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPADVEANDDFNRRFVDLYAAYDQQCQREGVVD 185


>gi|90023404|ref|YP_529231.1| DNA-dependent helicase II [Saccharophagus degradans 2-40]
 gi|89953004|gb|ABD83019.1| ATP-dependent DNA helicase UvrD [Saccharophagus degradans 2-40]
          Length = 724

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 40/198 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D +++ + E + A  P  +  V A AGSGKT +LV R+   + +    P  ++ 
Sbjct: 2   DVSYLLDGLNEPQREAVSA--PLGNILVLAGAGSGKTRVLVHRIAWHIQVEGLSPHQIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R                   + +I G++   S +             
Sbjct: 60  VTFTNKAAREMRSR-------------------LDEIMGERLGPSGVR------------ 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + V T H     +++    EA +  +F I D +   +      K     + +D++  
Sbjct: 89  --SMWVGTFHGIAHRLLKAHWQEAGLPQNFQILDSDDQLR----VVKRVYQELQIDDSRF 142

Query: 188 LKKAFYEILEISNDEDIE 205
             K     +    DE I 
Sbjct: 143 PFKQAQWFINGQKDEGIR 160


>gi|313884923|ref|ZP_07818675.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619614|gb|EFR31051.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 787

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 45/193 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           ++IDL++  + + +L ++      ++A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 6   KSIDLLNDRQRQAVLTTE--GPVLIAAGAGSGKTRVLTHRIAYLVQAKQVNPWNILAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++   +                                        
Sbjct: 64  TNKAANEMKERVQALVGPAAE--------------------------------------S 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T HA C  I+++   +   +S+F I D+ +   L+    K+ L  + LD  +   K
Sbjct: 86  IWVSTFHAMCARILRREAAKVGYSSNFTIIDQGEQATLM----KNILKELNLDGKQFNYK 141

Query: 191 AFYEILEISNDED 203
            F  +++ + ++ 
Sbjct: 142 DFLYVIDDAKNKG 154


>gi|317121134|ref|YP_004101137.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM
           12885]
 gi|315591114|gb|ADU50410.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM
           12885]
          Length = 791

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 39/162 (24%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL++     Q  A + P     V A AGSGKT +L +RV  LL     P  +L +T T  
Sbjct: 3   DLLADLNPAQREAVTHPGGPVLVLAGAGSGKTRVLTRRVAFLLEQGVAPHQILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   +                                        + +
Sbjct: 63  AAREMRERVEQLVGTGAR--------------------------------------DMWI 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T HA C  I+++         +F I DE+  + ++ +  K 
Sbjct: 85  GTFHASCVRILRRDGYRIGYDRNFIILDEDDRRSVLRDVLKE 126


>gi|288942739|ref|YP_003444979.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
 gi|288898111|gb|ADC63947.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
          Length = 732

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
             S  +D ++  + E + A DP     + A AGSGKT +LV R+  LL +    P ++L 
Sbjct: 2   NASFLLDSLNPAQREAVSA-DPGH-LLILAGAGSGKTRVLVHRIAWLLQVQQVQPWSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ E++                                         
Sbjct: 60  VTFTNKAAREMRSRLDEMLGTPV------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            GG+ V T H      ++    +A +   F I D +   +LI    K  L  + +D    
Sbjct: 83  -GGMWVGTFHGLAHRFLRAHWQDAGLPQQFQILDSDDQLRLI----KRLLKEMQIDEARW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             +     +    DE + 
Sbjct: 138 PPRQIQGFINRQKDEGLR 155


>gi|152998439|ref|YP_001343274.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
 gi|150839363|gb|ABR73339.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
          Length = 737

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           + S  +D ++  + E + A  P +++ V A AGSGKT +LV R+  L+ A    P +L+ 
Sbjct: 2   DVSFILDSLNDKQREAVAA--PLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ +++                                         
Sbjct: 60  VTFTNKAAREMQGRIEQLVGVP-------------------------------------- 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P G+ V T H     +++    +A +  +F I D +   +LI+   +     + +D+   
Sbjct: 82  PQGMWVGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQLRLIKRIMR----ELNIDDTRW 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    DE 
Sbjct: 138 PPKQVSWFINAQKDEG 153


>gi|187777525|ref|ZP_02993998.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC
           15579]
 gi|187774453|gb|EDU38255.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC
           15579]
          Length = 1279

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 35/219 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  ++        +  V+A AG+GKT +LVQR++  +L    P     LL +T T AAA
Sbjct: 6   WTDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + I+               K   + P    + K   LL           + T
Sbjct: 66  AEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NKSNIMT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++       I  +F I DE +   + +EA       +    NE+    F  +
Sbjct: 104 IHSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEAMDELFDELYEIENED----FINL 159

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +E         L          L+L  F  S       +
Sbjct: 160 VESYASRKDTRL------QEVVLELHRFAKSAPLPYDWL 192


>gi|254483191|ref|ZP_05096424.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036562|gb|EEB77236.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 717

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +  +++ + + + A   +++  V A AGSGKT +LV R+  L+      P ++L 
Sbjct: 2   DVSDILSPLNEAQRDAVAAE--SQNMLVLAGAGSGKTRVLVHRIAWLIRAEEFSPWSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM +R+ E++   SH                                    
Sbjct: 60  VTFTNKAAKEMRNRIEEMLQIPSH------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ V T H     +++    EA +  +F I D +   +L++   +     + LD +  
Sbjct: 84  --GMWVGTFHGLAHRLLKAHWKEAGLPQNFQILDSDDQLRLVKRVCR----EMELDESRW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K     +    DE + 
Sbjct: 138 PPKQAMWYINSQKDEGLR 155


>gi|256831910|ref|YP_003160637.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603]
 gi|256685441|gb|ACV08334.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603]
          Length = 833

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 52/225 (23%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           ++F + ++ + L      +Q           + A AGSGKT +L  R+  LL    A PS
Sbjct: 39  SAFVDDAQAL-LTGLNPQQQAAVEHAGSPLLIVAGAGSGKTRVLTHRIAWLLATGRAWPS 97

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AAAEM  RV++I+   +                                 
Sbjct: 98  EILAITFTNKAAAEMRERVIQIVGPSAQ-------------------------------- 125

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------- 176
                  + V T H+ C  I++       + S F+I D   S++L+    +         
Sbjct: 126 ------RMWVSTFHSTCVRILRAHASALGLKSTFSIYDSADSQRLLGLVVRELELDPKRF 179

Query: 177 ----LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
               +A  +    +EL      ++   ++ D E +I  I      
Sbjct: 180 TPKGVAQRISGLKDELMTPADHLVRAGSN-DYEVMIGRIFERYQQ 223


>gi|194290339|ref|YP_002006246.1| DNA-dependent atpase i and helicase ii [Cupriavidus taiwanensis LMG
           19424]
 gi|193224174|emb|CAQ70183.1| DNA-dependent ATPase I and helicase II [Cupriavidus taiwanensis LMG
           19424]
          Length = 782

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 44/193 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++   +EQL A   P   A + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3   DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGHVSPAGILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                           G+ 
Sbjct: 63  KAAKEMQTRLSSMLPI--------------------------------------NTRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   FAI D +        A K  L S+ +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHFRDAGLPQTFAILDSQDQLS----ALKRLLKSLNVDDEKYPAKNL 140

Query: 193 YEILEISNDEDIE 205
              +  + ++ + 
Sbjct: 141 QYFINNAKEQGLR 153


>gi|254281652|ref|ZP_04956620.1| UvrD/REP helicase [gamma proteobacterium NOR51-B]
 gi|219677855|gb|EED34204.1| UvrD/REP helicase [gamma proteobacterium NOR51-B]
          Length = 1113

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 9/203 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  Q   EQ  A DP RS  V+A AGSGKT +L QR + L+   A    +L LT T+ AA
Sbjct: 1   MSDQLIREQ--AIDPDRSVCVTAPAGSGKTALLTQRFMALMPRVAKLEQILALTFTRKAA 58

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+   ++      D     +  + Q ++   + +  A  +  ++     G  ++T
Sbjct: 59  AEMRARI---LSELDAARDNRPVNDDFERQSRQLASTALDHATSMGWSL--QADGFNIRT 113

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC  + +  P+ +        AD   ++ L EEA ++   S+   N      A   +
Sbjct: 114 IDSFCAYLTRHMPILSESGGLMQTAD--DARPLYEEAVRALFQSVGEPNPTGEALAALLL 171

Query: 196 LEISNDEDIETLISDIISNRTAL 218
              +N   +  ++ +++  R   
Sbjct: 172 AYHNNWARLSEMLVELLGRRGDW 194


>gi|255326665|ref|ZP_05367741.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296]
 gi|255295882|gb|EET75223.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296]
          Length = 990

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + ++           + A AGSGKT +L  R+  LL  + A P  +L +T T  AAAEM
Sbjct: 151 NERQEEAVLHSGSPLLIVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAAAEM 210

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++                             +A+H           + + T H+
Sbjct: 211 RERIEALVG---------------------------PRAKH-----------MWISTFHS 232

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           FC  ++++      + S F I D   S++L+    K  
Sbjct: 233 FCVRVLRREAAALGLKSTFTIYDSTDSQRLLSLIIKEL 270


>gi|260914154|ref|ZP_05920627.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
 gi|260631787|gb|EEX49965.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
          Length = 725

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +D ++  + + + A  P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2   DISELLDGLNDKQRKAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEGISEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   S                          ++ L       
Sbjct: 60  VTFTNKAAAEMRHRIESTLANHS--------------------------SQRLF------ 87

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ V T H+    +++   L+AN+   F I D +  
Sbjct: 88  --GMWVGTFHSIAHRLLRAHHLDANLPQDFQILDSDDQ 123


>gi|113868708|ref|YP_727197.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113527484|emb|CAJ93829.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16]
          Length = 782

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 44/193 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++   +EQL A   P   A + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3   DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                           G+ 
Sbjct: 63  KAAKEMQTRLSSMLPI--------------------------------------NTRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   FAI D +        A K  L S+ +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHFRDAGLPQTFAILDSQDQLS----ALKRLLKSLNVDDEKYPAKNL 140

Query: 193 YEILEISNDEDIE 205
              +  + ++ + 
Sbjct: 141 QYFINNAKEQGLR 153


>gi|319943193|ref|ZP_08017476.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia
           mirabilis ATCC 51599]
 gi|319743735|gb|EFV96139.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia
           mirabilis ATCC 51599]
          Length = 808

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 45/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    +Q  A   P+  A + A AGSGKT +L  R+  L+      P+ ++ +T T 
Sbjct: 3   DLLAHLNPQQRAAVTVPSGHALILAGAGSGKTRVLTTRIAWLVGTGQCSPAEIMAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                         P  + 
Sbjct: 63  KAAREMMARLSTMLVGA-------------------------------------NPRAMW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H  C  +++    +A + + F I D          A K  L  + +D+ +   KA 
Sbjct: 86  VGTFHGLCNRLLRAHHRDAGLPASFQIMDSADQLG----AIKRLLRGLNVDDQQFQPKAV 141

Query: 193 YEILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
              +  S +  +    +      +R   +L   +     R  +++
Sbjct: 142 QHFINGSKEAGLRAADVSGHDSHSRRLAELYGAYDEQCQREGVVD 186


>gi|90414255|ref|ZP_01222235.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
 gi|90324702|gb|EAS41243.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
          Length = 724

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A   +++ 
Sbjct: 2   DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLMQIEQASSYSIMS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ E++   S                                     
Sbjct: 60  VTFTNKAAAEMRGRINELMQGSS------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+   T H  C  +++   L+A +   F I D +   +L+    +  + +  LD    
Sbjct: 83  -AGMWNGTFHGLCHRMLRAHYLDARLPDDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
             +     +    DE +     D  ++   +T L++   +     R  +++
Sbjct: 138 PARQAAWYINGKKDEGLRPANIDAFNDPVEKTWLRIYTAYQEACDRAGLVD 188


>gi|291525748|emb|CBK91335.1| Superfamily I DNA and RNA helicases [Eubacterium rectale DSM 17629]
          Length = 763

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 52/229 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D++++ + E +L +D      + A AGSGKT +L  R   L+     +P  ++ +T T 
Sbjct: 3   LDMLNEQQREAVLTTD--GPLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++   S                                        + 
Sbjct: 61  KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I++++       ++F I D +  K L+++  K     + +D     +K F
Sbjct: 83  VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKR----LEIDTKMYKEKMF 138

Query: 193 YEILEISNDEDIE------TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             ++  + DE I+          D +  + AL +   + + L +   ++
Sbjct: 139 LNVISSAKDEMIDPIEFENRFTGDFVKRKQAL-VYKEYQNALKQNNALD 186


>gi|227500430|ref|ZP_03930492.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC
           35098]
 gi|227217493|gb|EEI82812.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC
           35098]
          Length = 1121

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 32/223 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +  TK ++L  +   ++  VSA AGSGKT +LV R+++L+  +    +  + +T T  A+
Sbjct: 4   MHFTKDQELAINARGKNIIVSAAAGSGKTSVLVTRIIKLITEDKEDIAKFIIVTFTNKAS 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + +       D  LS                      +   ++     +++T
Sbjct: 64  VEMKDRIRKALEDKLRDKDADLS---------------------FIKEQMKNLKHAQIKT 102

Query: 136 IHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           +H+FC  ++++ F    +++ +F +  +  S  L  EA          +  E  +   + 
Sbjct: 103 LHSFCSDMLRENFYYFDDLSPNFKVISDNTSTILKAEAIDEVFDMKYENMTETFENFLHS 162

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                ND   + ++         LK      S       ++++
Sbjct: 163 FARTKNDSGAKDIV---------LKTYDKIMSQTRPLAWLDEA 196


>gi|118590879|ref|ZP_01548279.1| DNA helicase II protein [Stappia aggregata IAM 12614]
 gi|118436401|gb|EAV43042.1| DNA helicase II protein [Stappia aggregata IAM 12614]
          Length = 812

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ LA + T     V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 47  DYLTGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGLARPSEILAVTFTN 106

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+   +                                          G   
Sbjct: 107 KAAREMKERIAGFVGG-------------------------------------NVEGMAW 129

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I+++      + S F+I D +   +LI++     + +  LD+     KAF
Sbjct: 130 LGTFHSICVKILRKHAELVGLKSSFSILDTDDQIRLIKQ----IIQAEGLDDKRWTAKAF 185

Query: 193 YEILEISNDEDI 204
             IL+   +  +
Sbjct: 186 AGILDGWKNRAL 197


>gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp.
           Marseille]
 gi|151281327|gb|ABR89737.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp.
           Marseille]
          Length = 760

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P + A + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3   NLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                           G+ 
Sbjct: 63  KAAKEMMTRLSAMMPI--------------------------------------NTRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D +    +I    K  L +  +D+ +   +  
Sbjct: 85  IGTFHGLCNRLLRAHYRDAALPQTFQILDSQDQLSMI----KRLLKANNIDDEKYPPRNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + D+ +     +     NR  ++L   +     R  +++
Sbjct: 141 MYFINGAKDQGLRASAVEAFDDYNRKMVELYEIYDQQCQREGVVD 185


>gi|167751208|ref|ZP_02423335.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702]
 gi|167655715|gb|EDR99844.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702]
          Length = 1235

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 32/225 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKA 73
           +  T ++    +     A VSA AGSGKT +L QRV+RL+     N  PS ++ +T T+ 
Sbjct: 1   MKYTDAQIKAINQGRNPAIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTEK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+            + L  +         +   +   R  L          ++
Sbjct: 61  AANELKARL------------DALMRQRISEAVSSADVRFLRNQRMKLRKA-------RI 101

Query: 134 QTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            TI +FC +++++   L  +I++ F++ DE +SK L E+     L     + ++  +   
Sbjct: 102 STISSFCFSLLRENIDLVTDISAGFSLIDETRSKALKEDILSDVLEDFYANGDKADRDVI 161

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            E     +D  +  +I         L +     ++    K +++S
Sbjct: 162 VENYVAKDDRRLRDII---------LTVHEKAINHTEPEKWLDRS 197


>gi|255994221|ref|ZP_05427356.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum
           ATCC 49989]
 gi|255993889|gb|EEU03978.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum
           ATCC 49989]
          Length = 1289

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 25/217 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +  + ++            VSA AGSGKT +L+QR+  L+    A    +L  T T AAA
Sbjct: 1   MKWSDNQLKAIEGRGSDIIVSAAAGSGKTAVLIQRLKSLVTDDGASLDEVLVATFTNAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+ + +T    +  +    E   +Q K                         + T
Sbjct: 61  AELKERLAKALTQEIEIVQDDEKREFLLVQRKNIET-------------------ASIGT 101

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+F   ++++F   A I+ +F I   +QS  LI    + TL ++  +  E   ++F   
Sbjct: 102 FHSFAIDLLREFNYRAGISKNFGIL-SQQSDALI---TRETLDAVFTEFFEAKDESFLAF 157

Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
           L+  SND+  + +  +II   T L+ + ++ + L R 
Sbjct: 158 LDAYSNDKSDDDIKKNIIEVYTKLRALPYYDAILARE 194


>gi|329901071|ref|ZP_08272696.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549259|gb|EGF33838.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 753

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +L+     EQL A   P + A + A AGSGKT +L  R+  L+   A  P+ +L +T T 
Sbjct: 3   NLLHNLNPEQLAAVTLPAQHALILAGAGSGKTRVLTTRIAWLIQNGAVAPNGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ R+  ++   +                                       G+ 
Sbjct: 63  KAAKEMTLRLSAMMPISTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D      +I    K  L ++ +D+ +   +  
Sbjct: 85  IGTFHGLCNRLLRAHHRDAGLPQTFQILDSSDQLSMI----KRMLKALNVDDEKFPPRNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + D+ +     D     NR  ++L  ++ +   R  +++
Sbjct: 141 MYFINGAKDQGLRAKDVDASDDYNRRMVELYDYYDNQCQREGVVD 185


>gi|167036387|ref|YP_001671618.1| DNA-dependent helicase II [Pseudomonas putida GB-1]
 gi|166862875|gb|ABZ01283.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 728

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  
Sbjct: 16  AQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 76  RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +  +F I D +  ++LI    K  +  + LD  +   +     +    
Sbjct: 98  HRLLRAHWQEARLVQNFQILDSDDQQRLI----KRVMRELGLDEQKWPARQAQWFINGQK 153

Query: 201 DEDIE 205
           DE + 
Sbjct: 154 DEGLR 158


>gi|26992028|ref|NP_747453.1| DNA-dependent helicase II [Pseudomonas putida KT2440]
 gi|24987163|gb|AAN70917.1|AE016735_10 DNA helicase II [Pseudomonas putida KT2440]
          Length = 728

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  
Sbjct: 16  AQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 76  RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +  +F I D +  ++LI    K  +  + LD  +   +     +    
Sbjct: 98  HRLLRAHWQEARLVQNFQILDSDDQQRLI----KRVMRELGLDEQKWPARQAQWFINGQK 153

Query: 201 DEDIE 205
           DE + 
Sbjct: 154 DEGLR 158


>gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
           FRC41]
          Length = 846

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 53/202 (26%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+     +Q  A + + S   + A AGSGKT +L +R+  L+ +    P  +L +T T 
Sbjct: 61  DLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTN 120

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV  ++   +                                        + 
Sbjct: 121 KAAAEMRERVAHLVGPIA--------------------------------------SRMW 142

Query: 133 VQTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V T H+ C  I+++   L A + S+F I D + SK+L        LA I  D N ++KK 
Sbjct: 143 VSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKF 194

Query: 192 FYEILEISNDEDIETLISDIIS 213
              +L       I  L +++IS
Sbjct: 195 TPRLL----GAGISNLKNELIS 212


>gi|256821408|ref|YP_003145371.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
 gi|256794947|gb|ACV25603.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
          Length = 726

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +  I  ++  + E + A  P ++  V A AGSGKT +LV R+  L+ + +    ++L 
Sbjct: 2   DATSIIQPLNDAQKEAVTA--PNKALLVLAGAGSGKTRVLVHRIAWLVQVEHISAHSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++   +                                     
Sbjct: 60  VTFTNKAAKEMLGRVEDMLAMPAR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H+    +++    +  +   F I D +   ++I+   K     + LD+NE 
Sbjct: 84  --GMWIGTFHSIAHRLLRAHYRDVGLPEGFQILDAQDQLRVIKRVMK----ELNLDDNEW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K     +    D+ + 
Sbjct: 138 PPKQAQWFINAKKDDGLR 155


>gi|163786810|ref|ZP_02181258.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium
           ALC-1]
 gi|159878670|gb|EDP72726.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium
           ALC-1]
          Length = 1043

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 13/201 (6%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  L +  L++L+A+ +      +L +T T  A  EM  R++ ++ ++S   
Sbjct: 10  NASAGSGKTFTLAKAYLKILVASKNYDQFKSVLAITFTNKAVGEMKERIINMLKSFSSEE 69

Query: 94  DEILSAEITKIQGKKPNKS---DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                  + +    + +      ++K++H+L  I+   G   + TI  F   +++ F  +
Sbjct: 70  SLTEPHPMFEAICDELDIEPKFLLNKSKHILKHIIHNYGAFDISTIDGFTHRVIRTFAHD 129

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE----- 205
            N+  +F +  E   ++L+ EA  S +A    D         + I +  +D+  +     
Sbjct: 130 LNLPVNFEV--ELDQERLLNEAVDSLIAKAGSDKTLTSTLIDFAIEKADDDKTWDISYDF 187

Query: 206 TLISDIISNRTALKLIFFFFS 226
             IS ++ N      I    +
Sbjct: 188 NKISKLLVNENDFSAIEGLKN 208


>gi|119503960|ref|ZP_01626041.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080]
 gi|119459963|gb|EAW41057.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080]
          Length = 1115

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 9/214 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I      +  A DPTRS  V+A AGSGKT +L QR+L LL     P  +L +T T+ AA
Sbjct: 1   MIDSDTQIRTTALDPTRSFCVTAPAGSGKTELLTQRILALLPTVDRPEQVLAMTFTRKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+L  +       + I S E    Q +    + ++ A     ++   P    ++T
Sbjct: 61  AEMRERLLSKLDEARRRVEVIESYE---QQTRDLALAVLAHADERNWSL--DPEQFNLRT 115

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I + C  + +Q P+ + +     I   EQ K L E A      ++  D  +  +     +
Sbjct: 116 IDSLCADLTRQMPILSGLGGAVEIT--EQDKPLFELAVIELFDAVGSDA-QVGEDLRCLL 172

Query: 196 LEISNDED-IETLISDIISNRTALKLIFFFFSYL 228
           L  +ND D +  L+  +++ R          +Y 
Sbjct: 173 LHFNNDWDVLRGLLVALLARRGDWADTLGQHTYP 206


>gi|82701697|ref|YP_411263.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196]
 gi|82409762|gb|ABB73871.1| ATP-dependent DNA helicase UvrD [Nitrosospira multiformis ATCC
           25196]
          Length = 743

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 45/214 (21%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQL A   P +SA V A AGSGKT +L  R+  L+ +    P  +L +T T  
Sbjct: 4   LLTALNPEQLEAVTLPHQSALVLAGAGSGKTKVLTTRIAYLIQSGEVSPHGILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 64  AAKEMLTRIAAMLPI--------------------------------------NTRGMWI 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D      +I    K  L ++  D+ +   +   
Sbjct: 86  GTFHGLCNRLLRAHHQDAGLPQTFQILDSADQLAVI----KRILKNLGADDEKFPPRQVQ 141

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             +  + +E +     +   + T  K++ F+ SY
Sbjct: 142 WFINNAKEEGLRASQVEAYDDYTR-KMVEFYASY 174


>gi|148550460|ref|YP_001270562.1| DNA-dependent helicase II [Pseudomonas putida F1]
 gi|148514518|gb|ABQ81378.1| ATP-dependent DNA helicase UvrD [Pseudomonas putida F1]
 gi|313496365|gb|ADR57731.1| UvrD [Pseudomonas putida BIRD-1]
          Length = 728

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  
Sbjct: 16  AQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 76  RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +  +F I D +  ++LI    K  +  + LD  +   +     +    
Sbjct: 98  HRLLRAHWQEARLVQNFQILDSDDQQRLI----KRVMRELGLDEQKWPARQAQWFINGQK 153

Query: 201 DEDIE 205
           DE + 
Sbjct: 154 DEGLR 158


>gi|241768156|ref|ZP_04765619.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241360465|gb|EER57577.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 208

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R+LR LL  A P  +L +T TK AA EM  R+ E
Sbjct: 21  AIACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGAAPHEILAITFTKKAAGEMRQRLQE 80

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKA-RHLLITILETPGGLKVQTIHAFCEAI 143
            +  ++H   + L+ E+          SD  +A ++L   +L +   ++++T H++  A+
Sbjct: 81  WLEVFAHAPLDDLARELIARGISPERSSDKREALQNLYRKMLASGRPVQIRTFHSWFAAL 140

Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           +   PL       + + F + +++   + + E     L ++  
Sbjct: 141 LGTAPLALLQAQGLPASFELLEDD--AEAVREVWAPFLQTVAT 181


>gi|254362319|ref|ZP_04978431.1| DNA helicase II [Mannheimia haemolytica PHL213]
 gi|153093899|gb|EDN74827.1| DNA helicase II [Mannheimia haemolytica PHL213]
          Length = 732

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 41/220 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   ++                                        
Sbjct: 60  VTFTNKAAAEMRHRIEYTLSQSGD----------------------------------NR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ V T H+    +++   L+A++   F I D E  ++      K  L    +D    
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDTEDQQR----LLKRLLKLHNIDEKHF 141

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             K     +    D+       D  ++    KL+  +  Y
Sbjct: 142 PPKHVAWYINAQKDKGKRAKDIDHYNDPNEKKLVEIYQIY 181


>gi|261493261|ref|ZP_05989788.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311111|gb|EEY12287.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 734

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 4   DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   ++   +                                    
Sbjct: 62  VTFTNKAAAEMRHRIEYTLSQSGN----------------------------------NR 87

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+A++   F I D E 
Sbjct: 88  LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDTED 124


>gi|307717800|ref|YP_003873332.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM
           6192]
 gi|306531525|gb|ADN01059.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM
           6192]
          Length = 1152

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 28/161 (17%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               +Q  A +  ++A V A AGSGKT +L +R LRL+     PS +L LT T+ AAAEM
Sbjct: 2   NLNEDQRRAVETEKTAVVIAGAGSGKTRVLTERYLRLVRNGVQPSRILALTFTRKAAAEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + I   +  S                              +LE      + T+ +
Sbjct: 62  HERISQGIRGLARSSHG----------------------------LLEDFENAHISTLDS 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           FC  +++   L   I   F +   +  + L   A    L+ 
Sbjct: 94  FCALVLRPHALGFGIRPDFGMCAADDLEGLESRALSFLLSK 134


>gi|300712678|ref|YP_003738491.1| putative helicase [Halalkalicoccus jeotgali B3]
 gi|299126362|gb|ADJ16700.1| putative helicase [Halalkalicoccus jeotgali B3]
          Length = 1253

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 36/221 (16%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLL 66
           + S T +    T+ +Q LA D  ++  ++A AG+GKT  L +R   +L       P+ ++
Sbjct: 19  QASATKEFELTTEQQQALALD--QNIAITAGAGTGKTTTLTERYRHILTEYPELSPTQIV 76

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T+ A +EM  ++  ++       D + SA        +  K D+  A         
Sbjct: 77  TITFTRDATSEMRDKIRGVV------DDALESASAETYDRWQRAKDDIEDAY-------- 122

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--- 183
                 + TIH FC  I++++ +E  +   F   D  ++  LI+   +  LA I+ +   
Sbjct: 123 ------IHTIHGFCSRILEEYAVETGVHPDFETLDNGEAVTLIDRTVRDVLAYILDEATH 176

Query: 184 ---------NNEELKKAFYEILEISNDEDIETLISDIISNR 215
                        L      +  + + +D+ +L++ +++ R
Sbjct: 177 LRAADAIDAQKATLTDDVERLARLYSRDDLVSLLAGLLNER 217


>gi|325273939|ref|ZP_08140102.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51]
 gi|324100910|gb|EGB98593.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51]
          Length = 728

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  
Sbjct: 16  AQRQAVAAALGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 76  RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +  +F I D +  ++LI    K  +  + LD  +   +     +    
Sbjct: 98  HRLLRAHWQEARLVQNFQILDSDDQQRLI----KRVMRELGLDEQKWPARQAQWFINGQK 153

Query: 201 DEDIE 205
           DE + 
Sbjct: 154 DEGLR 158


>gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           C231]
 gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
          Length = 846

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 53/202 (26%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+     +Q  A + + S   + A AGSGKT +L +R+  L+ +    P  +L +T T 
Sbjct: 61  DLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTN 120

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV  ++   +                                        + 
Sbjct: 121 KAAAEMRERVAHLVGPIA--------------------------------------SRMW 142

Query: 133 VQTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V T H+ C  I+++   L A + S+F I D + SK+L        LA I  D N ++KK 
Sbjct: 143 VSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKF 194

Query: 192 FYEILEISNDEDIETLISDIIS 213
              +L       I  L +++IS
Sbjct: 195 TPRLL----GAGISNLKNELIS 212


>gi|34541655|ref|NP_906134.1| UvrD/REP helicase domain-containing protein [Porphyromonas
           gingivalis W83]
 gi|34397973|gb|AAQ67033.1| UvrD/REP helicase domain protein [Porphyromonas gingivalis W83]
          Length = 1102

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 8/200 (4%)

Query: 38  ANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKTH L    LRL L        +  +T T  A AEM  R+LE + + +      
Sbjct: 12  ASAGSGKTHTLTGEYLRLALRTRGAFRYIQAVTFTNKATAEMKERILEELYSLAVGGSSP 71

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
            + E+ +       +  + +A+ +L  IL     L+V+TI +F + +M+ F  E  +   
Sbjct: 72  FAEELMQELALTTEQLQV-RAQEVLTEILNDYSSLRVKTIDSFFQEVMRAFSHELGLPGG 130

Query: 157 FAIADEEQSKKLIEEAKKSTLASIML----DNNEELKKAFYEILEISNDEDIETLISDII 212
           F I  E + K ++E+A    L S+      D    +++   +++E     +I   I  + 
Sbjct: 131 FRI--EMEQKAVLEQAVVRLLHSLGEKDTSDVENWIRRLAEDLIEEGRGHNIRREIVSLG 188

Query: 213 SNRTALKLIFFFFSYLWRRK 232
                 +L+          K
Sbjct: 189 DELFKEQLLLLSEEGKLPTK 208


>gi|154483242|ref|ZP_02025690.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC
           27560]
 gi|149736050|gb|EDM51936.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC
           27560]
          Length = 780

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 40/170 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +QL          + A AGSGKT +L  R+  L+   +  P  ++ +T T  AA EM  R
Sbjct: 15  QQLAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKHVQPYNIMAITFTNKAAGEMRER 74

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V +I+   +                                        + V T H+ C 
Sbjct: 75  VNKIVGFGAE--------------------------------------QVWVSTFHSACV 96

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKK 190
            I++++      ++ F I D E  KKL+++  K+  L   M   N  L K
Sbjct: 97  RILRRYIDRIGYSNDFTIYDTEDQKKLLKDVIKNLNLDPKMYKENAVLGK 146


>gi|326797393|ref|YP_004315213.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
 gi|326548157|gb|ADZ93377.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
          Length = 736

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           + S  +D ++  + E + A  P +++ V A AGSGKT +LV R+  L+ A    P +L+ 
Sbjct: 2   DVSFILDALNDKQREAVAA--PLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ +++                                         
Sbjct: 60  VTFTNKAAREMQGRIEQLVGLP-------------------------------------- 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P G+ V T H     +++    +A +  +F I D +   +L++   +       +D+   
Sbjct: 82  PQGMWVGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQLRLVKRIMREF----NIDDTRW 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    DE 
Sbjct: 138 PPKQVAWFINGQKDEG 153


>gi|328944201|ref|ZP_08241665.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829]
 gi|327491120|gb|EGF22895.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829]
          Length = 1253

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 41/194 (21%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +  +      + +D ++    ++ +        +V A AGSGKT  L +RVL  L   + 
Sbjct: 6   MKTSGVLTDEKILDGLND--QQKQIVKTLASPLFVEAGAGSGKTFTLTKRVLWALTKGSG 63

Query: 62  P---------STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112
           P         S +L +T T AAA E+  R+   +                          
Sbjct: 64  PNGTAFLDDVSQVLIITFTHAAAHEIKERIRSSL-------------------------- 97

Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
              +  H+    LE      + TIH+ C  I++ + L+  I   F+IA E  + KL+  A
Sbjct: 98  ---REAHMPQQALEV-DNAWISTIHSMCSRILKTYALDLGIDPQFSIASENDTVKLMRRA 153

Query: 173 KKSTLASIMLDNNE 186
            +  L+       E
Sbjct: 154 VQDVLSDYYHKRFE 167


>gi|170759836|ref|YP_001785776.1| recombination helicase AddA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|251764515|sp|B1KUZ8|ADDA_CLOBM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|169406825|gb|ACA55236.1| ATP-dependent nuclease subunit A [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 1279

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 83/219 (37%), Gaps = 35/219 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  ++        +  V+A AG+GKT +LVQR++  +L    P     LL +T T AAA
Sbjct: 6   WTDEQRQAVFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + I+               K   + P    + K   LL           + T
Sbjct: 66  AEMRERIGDAIS---------------KGLDENPESKALRKQLTLL-------NKSNIMT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  I++       I  +F I DE +   + +EA       +    N++    F  +
Sbjct: 104 IHSFCLQIIKNNFHTIEIDPNFRICDETEGILMKQEAMDELFDELYEIENKD----FINL 159

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +E         L          L+L  F  S  +    +
Sbjct: 160 VESYASRKDTRL------QEVVLELHRFAKSAPFPYDWL 192


>gi|308234385|ref|ZP_07665122.1| UvrD/REP helicase [Atopobium vaginae DSM 15829]
          Length = 1248

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 41/194 (21%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +  +      + +D ++    ++ +        +V A AGSGKT  L +RVL  L   + 
Sbjct: 1   MKTSGVLTDEKILDGLND--QQKQIVKTLASPLFVEAGAGSGKTFTLTKRVLWALTKGSG 58

Query: 62  P---------STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112
           P         S +L +T T AAA E+  R+   +                          
Sbjct: 59  PNGTAFLDDVSQVLIITFTHAAAHEIKERIRSSL-------------------------- 92

Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
              +  H+    LE      + TIH+ C  I++ + L+  I   F+IA E  + KL+  A
Sbjct: 93  ---REAHMPQQALEV-DNAWISTIHSMCSRILKTYALDLGIDPQFSIASENDTVKLMRRA 148

Query: 173 KKSTLASIMLDNNE 186
            +  L+       E
Sbjct: 149 VQDVLSDYYHKRFE 162


>gi|110835551|ref|YP_694410.1| DNA helicase II [Alcanivorax borkumensis SK2]
 gi|110648662|emb|CAL18138.1| DNA helicase II [Alcanivorax borkumensis SK2]
          Length = 720

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 45/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            ID ++  + + + A D  +   V A AGSGKT +LV R+   +    A P  +L +T T
Sbjct: 7   LIDGLNPAQRDAVAADD--QHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILAVTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+ +++                                        +  G+
Sbjct: 65  NKAAAEMRGRIEQLLDM--------------------------------------SADGM 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H     +++    EA +   F I D +   +LI+   K     + LD      + 
Sbjct: 87  WVGTFHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSK----ELGLDEQRWPARQ 142

Query: 192 FYEILEISNDEDIET 206
               +    DE +  
Sbjct: 143 ATWFINSQKDEGLRA 157


>gi|326790761|ref|YP_004308582.1| recombination helicase AddA [Clostridium lentocellum DSM 5427]
 gi|326541525|gb|ADZ83384.1| recombination helicase AddA [Clostridium lentocellum DSM 5427]
          Length = 1251

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 27/227 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLTHT 71
           ++ T ++Q        +  VSA AGSGKT +L +RV++ ++ +           L +T T
Sbjct: 1   MAWTPAQQAAIDQREANILVSAAAGSGKTAVLTERVMKRIIGSEQEVPIEIDRFLIVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AAA EM  R+L+ ++ + +   E L+ E  K          + +   L+          
Sbjct: 61  SAAAGEMKERILQKLSDYMNGLQENLNEENLKKI------DYIERQMALVPQA------- 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + TIH+FC   ++ +    +I  +  +  + +   +  E     L   + D   +    
Sbjct: 108 SISTIHSFCLKTIRAYFNRLDIDPNIKVGTQAELDVMKSELLDELLEECLEDGASDFMAL 167

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                ++   + ++ LI D+ +         F  S  +    +   +
Sbjct: 168 AEVYGDVQGLDSLKNLILDVST---------FSKSTPFPEVWLHNQV 205


>gi|313201054|ref|YP_004039712.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312440370|gb|ADQ84476.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 1141

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 16/228 (7%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L++Q    +  A +   S  V A AG+GKT +L QR L+LL     P  ++ +T T  AA
Sbjct: 16  LLAQDDESRRRALE-LESFIVEAPAGAGKTELLTQRYLKLLTTVREPEEIIAITFTNKAA 74

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+L+ +             +  K +     +  +  A      +LE P  L++ T
Sbjct: 75  AEMRARILDSLLMAGSGERPP---QPHKQKTFALGQDALQHAAERGWHLLENPARLRIFT 131

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +    + +Q PL +   +  A+   E +    + A + TL     D  +    A  + 
Sbjct: 132 IDSLSSHLARQMPLMSRFGAQPAVT--EDASAYYQLAAERTL-----DLADGSSDAVTQA 184

Query: 196 LEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           L   +++ +    L++D+++ R          +    R + E +L  +
Sbjct: 185 LRYVDNDSLRLTQLLADMLAKRDQWLPYA---NRTDTRDLAEAALQHL 229


>gi|296532805|ref|ZP_06895482.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC
           49957]
 gi|296266866|gb|EFH12814.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC
           49957]
          Length = 745

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 44/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTK 72
           D +++   EQ  A +       V A AG+GKT +L  R    L+   A P+ +L +T T 
Sbjct: 16  DYLARLNPEQRAAVETVDGPLLVLAGAGTGKTRVLTTRFAHILMTRRAFPNQVLAVTFTN 75

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  I+                                           GL 
Sbjct: 76  KAAREMRERVSAILG--------------------------------------HPAEGLW 97

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  ++++      +TS+F+I D +   +L+++     + +  +D      +A 
Sbjct: 98  LGTFHALCARMLRRHAELVGLTSNFSILDTDDQMRLLKQ----VMEASGVDMKRWPPQAL 153

Query: 193 YEILEISNDEDI 204
             I++   D  +
Sbjct: 154 MGIIQRWKDRGL 165


>gi|188995913|ref|YP_001930165.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188595593|dbj|BAG34568.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 1074

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 8/200 (4%)

Query: 38  ANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKTH L    LRL L        +  +T T  A AEM  R+LE +   +      
Sbjct: 12  ASAGSGKTHTLTGEYLRLALRTRGAFRYIQAVTFTNKATAEMKERILEELYGLAVGGSSP 71

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
            + E+ +       +  + +A+ +L  IL     L+V+TI +F + +M+ F  E  +   
Sbjct: 72  FAEELMQELALTTEQLQV-RAQEVLTEILNDYSSLRVKTIDSFFQEVMRAFSHELGLPGG 130

Query: 157 FAIADEEQSKKLIEEAKKSTLASIML----DNNEELKKAFYEILEISNDEDIETLISDII 212
           F I  E + K ++E+A    L S+      D    +++   +++E     +I   I  + 
Sbjct: 131 FRI--EMEQKAVLEQAVVRLLHSLGEKDTSDVENWIRRLAEDLIEEGRGHNIRREIVSLG 188

Query: 213 SNRTALKLIFFFFSYLWRRK 232
                 +L+          K
Sbjct: 189 DELFKEQLLLLSEEGKLPTK 208


>gi|187929519|ref|YP_001900006.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|309781705|ref|ZP_07676438.1| DNA helicase II [Ralstonia sp. 5_7_47FAA]
 gi|187726409|gb|ACD27574.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|308919346|gb|EFP65010.1| DNA helicase II [Ralstonia sp. 5_7_47FAA]
          Length = 786

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++    EQ  A   P  SA + A AGSGKT +L  R+  L+ +    PS +L +T T 
Sbjct: 3   DLLANLNPEQRAAITLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ R+  ++                                            + 
Sbjct: 63  KAAKEMTARLQAMLPI--------------------------------------NTRAMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D +        A K  L S+ +D+ +   K  
Sbjct: 85  IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     +I +  +R    L   + +   R  +++
Sbjct: 141 QYFINGAKEQGLRAGDLEIANEYDRRMADLYAAYDAQCQREGVVD 185


>gi|163857867|ref|YP_001632165.1| putative nuclease/helicase [Bordetella petrii DSM 12804]
 gi|163261595|emb|CAP43897.1| putative nuclease/helicase [Bordetella petrii]
          Length = 1152

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           + +  A DP  S  V A AGSGKT +L  R+L LL     P  ++ +T T+ AA+EM  R
Sbjct: 12  AARARALDPASSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHAR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           VL  +   S         +    +  +  ++ + +   L   +L+ P  L ++TI +FC 
Sbjct: 72  VLGKLRDGSGPMPATEHGQ----RSWQLARAALERNDALGWKLLQHPARLSIRTIDSFCA 127

Query: 142 AIMQQFPLEANITSHFAIADEEQS 165
            +++  P  + +     IAD+ Q+
Sbjct: 128 GLVRGMPWLSELGGMPDIADDAQA 151


>gi|261496496|ref|ZP_05992876.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307699|gb|EEY09022.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 732

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 37/157 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   ++                                        
Sbjct: 60  VTFTNKAAAEMRHRIEYTLSQSGD----------------------------------NR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+A++   F I D E 
Sbjct: 86  LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDTED 122


>gi|170724287|ref|YP_001751975.1| DNA-dependent helicase II [Pseudomonas putida W619]
 gi|169762290|gb|ACA75606.1| UvrD/REP helicase [Pseudomonas putida W619]
          Length = 729

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM  
Sbjct: 16  AQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 76  RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +  +F I D +  ++L     K  +  + LD      +     +    
Sbjct: 98  HRLLRAHWQEARLVQNFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 153

Query: 201 DEDIE 205
           DE + 
Sbjct: 154 DEGLR 158


>gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300072560|gb|ADJ61959.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 759

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 45/214 (21%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL 83
              + P +SA + A AGSGKT +L  R+  L+      PS +L +T T  AA EM+ R+ 
Sbjct: 14  AAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAAKEMTARLS 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            ++                                           G+ + T H  C  +
Sbjct: 74  GMLPI--------------------------------------NTRGMWIGTFHGLCNRL 95

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++    +A +   F I D +        A K  L  + +D+ +   +     +  + D+ 
Sbjct: 96  LRAHHKDAGLPQTFQILDTQDQLS----AIKRLLKQMNVDDEKYPPRNLMYFINSAKDQG 151

Query: 204 IETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
           +     D     NR  ++L   +     R  +++
Sbjct: 152 LRAKDVDAYDDYNRKFVELYELYDQQCQREGVVD 185


>gi|315187403|gb|EFU21159.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 1149

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 81/217 (37%), Gaps = 40/217 (18%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               +Q  A +  ++A V A AGSGKT +L +R LRL+     PS +L LT T+ AAAEM
Sbjct: 2   NLNEDQRRAVETEKTAVVIAGAGSGKTRVLTERYLRLVKNGMQPSRILALTFTRKAAAEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   I   +  S                              +LE      + T+ +
Sbjct: 62  HERISRGIRGLARSSPG----------------------------LLEDFENAHISTLDS 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  +++   L   I   F +   E  + L   A  S L S         KK    +  +
Sbjct: 94  FCALVLRPHALGFGIRPDFGMCAAEDLEGLESRAL-SFLGS---------KKGLSGVSRL 143

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            +   ++ +++D + +    +      +     +  E
Sbjct: 144 IHSWGLDRVVNDFLCHYG--RNHAIVGATPDPEEWEE 178


>gi|326203370|ref|ZP_08193235.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM
           2782]
 gi|325986628|gb|EGD47459.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM
           2782]
          Length = 783

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 44/195 (22%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL+S   +EQ  A         + A AGSGKT +L  R+  L+     +PS +L +T T
Sbjct: 1   MDLLSGLNAEQKEAVLHNEGPLLILAGAGSGKTRVLTHRIAYLIEQHGVYPSNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +I   S                                        +
Sbjct: 61  NKAAREMKERIAGLIGDLS--------------------------------------NDM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+ C  I+++   +      F I D +  + +I+E     L  + L++     K+
Sbjct: 83  WVGTFHSICIRILRRDIEKLGYDRSFVIYDTQDQQVVIKEC----LKELNLNDKNFPPKS 138

Query: 192 FYEILEISNDEDIET 206
             E +    DE I+ 
Sbjct: 139 VLETIGKQKDELIDA 153


>gi|110596834|ref|ZP_01385124.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031]
 gi|110341521|gb|EAT59981.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031]
          Length = 740

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 39/164 (23%)

Query: 15  DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           D +      ++   S       V A AGSGKT ++  R+  L+      P+ +L LT T 
Sbjct: 3   DFLHDLNEVQRNAVSATEGPVMVLAGAGSGKTRVITYRIAYLISNEGVSPNNILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HRV  ++ A S                                       GL 
Sbjct: 63  KAAGEMRHRVDTLLHAGSS-------------------------------------SGLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    +++ +        +F+I D + SK LI +A    
Sbjct: 86  IGTFHSIFARLLRTYIHLIGYDRNFSIFDSDDSKSLIRQAMTEL 129


>gi|221194693|ref|ZP_03567750.1| UvrD/REP helicase [Atopobium rimae ATCC 49626]
 gi|221185597|gb|EEE17987.1| UvrD/REP helicase [Atopobium rimae ATCC 49626]
          Length = 1169

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 73/197 (37%), Gaps = 39/197 (19%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---------AHPS 63
           T+D  S T  ++       +  +V+A AGSGKT  L +RV+  L                
Sbjct: 2   TLDFHSYTPGQKQAIQTLDKPLFVAAGAGSGKTFTLTKRVVWALSKGSGTDGGAYLDSLD 61

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
             L +T T  AA E+  RV   +                                 L   
Sbjct: 62  QALIITFTNEAAKEIKERVRSALEEEG-----------------------------LFDQ 92

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            L       + TIH+ C  I++    +  I   F + DE +  +L++E+ +  L+S+   
Sbjct: 93  AL-NVDSAWISTIHSMCARILRSHAFDLGIDPDFIVLDEHRRNELLQESLEEVLSSLRET 151

Query: 184 NNEELKKAFYEILEISN 200
           +  +   + +++ + ++
Sbjct: 152 DEYKGFFSVFDLKDTAS 168


>gi|94311565|ref|YP_584775.1| ATP-dependent DNA helicase UvrD [Cupriavidus metallidurans CH34]
 gi|93355417|gb|ABF09506.1| DNA-dependent ATPase I and helicase II [Cupriavidus metallidurans
           CH34]
          Length = 787

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++   +EQL A   P   A + A AGSGKT +L  R+  L+      P+ +L +T T  
Sbjct: 4   LLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 64  AAKEMQTRLSSMLPI--------------------------------------NTRGMWI 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   FAI D +        A K  L  + +D+ +   K   
Sbjct: 86  GTFHGLCNRMLRAHFRDAGLPQTFAILDSQDQLS----AIKRLLKGLNVDDEKYPPKNLQ 141

Query: 194 EILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
             +  + ++ +     +     NR  + L   +     R  +++
Sbjct: 142 YFINNAKEQGLRPADVEANDDFNRRFVDLYAAYDEQCQREGVVD 185


>gi|91215425|ref|ZP_01252396.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755]
 gi|91186377|gb|EAS72749.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755]
          Length = 1045

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 13/190 (6%)

Query: 37  SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-- 91
           +A+AGSGKT  L +R L LLL    N+    +L +T T  A  EM  R+LE + ++S   
Sbjct: 11  NASAGSGKTFKLAERYLNLLLSSPQNSSFQNILAITFTNKAVGEMKSRILEYLVSFSEGK 70

Query: 92  --LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L D+ +   I K  G    +    K++ +L  IL      +V TI AF   I++ F  
Sbjct: 71  TSLEDDPMLLLIHKSTGLTK-EQIQKKSKRVLEAILNNYAAFEVSTIDAFTHRIIRTFAK 129

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LEISNDEDIETLI 208
           +  ++ +F I  E  +K+++E A +  +     +  EEL     +   E   D+    + 
Sbjct: 130 DLGLSMNFDI--EMDTKQVLELAVERVVEKAGKE--EELTDVLIDFAAEKVEDDKSGNIT 185

Query: 209 SDIISNRTAL 218
            DII+  + L
Sbjct: 186 LDIINASSLL 195


>gi|307824211|ref|ZP_07654437.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
 gi|307734591|gb|EFO05442.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
          Length = 725

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 45/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            ID ++  + + + A  P+++  V A AGSGKT +LV R+   + +      ++L +T T
Sbjct: 6   IIDPLNDAQRQAVTA--PSQAMLVLAGAGSGKTRVLVHRIAWQIQVLGVSAHSILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ E++   +                                        +
Sbjct: 64  NKAAKEMRGRIEELLNMSAQ--------------------------------------SM 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H     ++++   +A +   F + D     +LI    K  LA++ LD ++   + 
Sbjct: 86  WIGTFHGVAHRLLRRHAKQAKLPETFQVMDSGDQLRLI----KRLLATLNLDADKWPPRQ 141

Query: 192 FYEILEISNDEDIET 206
               +    DE I  
Sbjct: 142 VQWYINAQKDEGIRA 156


>gi|251792813|ref|YP_003007539.1| DNA-dependent helicase II [Aggregatibacter aphrophilus NJ8700]
 gi|247534206|gb|ACS97452.1| DNA helicase II [Aggregatibacter aphrophilus NJ8700]
          Length = 724

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 38/158 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2   DFAELLDGLNDKQREAVSA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGVSEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  +++  +                           + L       
Sbjct: 60  VTFTNKAAAEMRHRIESVLSDGN---------------------------QRLF------ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ V T H+    +++   L+A++   F I D E  
Sbjct: 87  --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQ 122


>gi|113460642|ref|YP_718708.1| DNA-dependent helicase II [Haemophilus somnus 129PT]
 gi|112822685|gb|ABI24774.1| ATP-dependent DNA helicase UvrD [Haemophilus somnus 129PT]
          Length = 726

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 37/167 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLC 67
           + SE ++ +++ +   ++A  P  +  V A AGSGKT +L  R+  L      P  +++ 
Sbjct: 2   DISELLNDLNEKQRNAVVA--PLGNYLVLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR+   +  +SH                                  + 
Sbjct: 60  VTFTNKAAMEMRHRIEATLARYSH----------------------------------QR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             G+ + T H+    +++    +A +   F I D E   +L++   K
Sbjct: 86  VFGMWIGTFHSIANRLLRSHYADAGLPQDFQILDSEDQLRLVKRLMK 132


>gi|289450290|ref|YP_003475636.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184837|gb|ADC91262.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 1448

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 45/239 (18%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75
           I+ T  +Q + + P  +  VSA+AGSGKT +L +R+L  LL      + L+ +T T+AAA
Sbjct: 5   INFTAEQQAVLTAPIGNILVSASAGSGKTAVLTERILEHLLSGQTELNRLVVVTFTEAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  ++   I              + KI    P+++ + + +           G  + T
Sbjct: 65  KQMKDKIRRKI--------------LAKIPSCCPDEAAILQDQMAY------MPGADIST 104

Query: 136 IHAFCEAIMQQFPLEAN-------ITSHFAIADEEQSKKLIEEAKKSTLASIMLD-NNEE 187
           +HAFC+ I+++F            + + F   D  ++  L+++A    L  I +  ++ E
Sbjct: 105 MHAFCKKIIKEFIYVLRDDKGNPLLDTEFKTLDGTEAALLLQQALDDVLNQIYVGIDHGE 164

Query: 188 LKK---------------AFYEILEISNDEDIETLISDIISNR-TALKLIFFFFSYLWR 230
           L K               AFY +L+  +    +  + +++SN  T L+ +  +  +L +
Sbjct: 165 LPKICWDFVGLSPAAAQMAFYRLLDSCDFNGDDAALRELLSNSLTKLRSLPHYGEFLLQ 223


>gi|322411491|gb|EFY02399.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 1210

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 27/224 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+ 
Sbjct: 30  TPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELR 89

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + + A    + + L                    +  L   L+      + T+ AF
Sbjct: 90  ERIEKKLYAQIAKTSDPL-------------------LKAYLTDQLQALSQADIGTMDAF 130

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     I+  F I  D+ +   L+ +         M  ++  L KA  +    
Sbjct: 131 AQKVLIRYGYSIGISPQFRIMQDKAEQDILMRDVFSKLFEEFMTQDDSSLFKALVK--NF 188

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           S +    +   +++          F  S    ++ +E++    A
Sbjct: 189 SGNRKDASSFREVV-----YSCYAFSQSTENPKQWLEETFLKAA 227


>gi|325479866|gb|EGC82951.1| putative ATP-dependent nuclease subunit A [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 1121

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 32/222 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +  T  ++   +   ++  VSA AGSGKT +LV R++RL++ +    S  + +T T  A+
Sbjct: 4   MEFTDKQKEAIATRDKNIIVSAAAGSGKTSVLVTRIIRLVIDDKKDISKFIIVTFTNKAS 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +           S                      +   ++     +V+T
Sbjct: 64  VEMKDRIRAALEEELGKDGADYS---------------------FIKEQIKNLKYAQVKT 102

Query: 136 IHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           +H+FC  ++++ F    N++  F +  +  S  L+ EA     +      +   +     
Sbjct: 103 LHSFCADMLRENFYYFDNLSPSFKVISDNTSTILMAEAMDDVFSRAYEKMDTNFENFLKN 162

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             E  ND+  + +I          K      S +   + ++K
Sbjct: 163 FSENKNDDKAKDIIY---------KTYDKIMSQVRPIEWLDK 195


>gi|238923773|ref|YP_002937289.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656]
 gi|238875448|gb|ACR75155.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656]
          Length = 763

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 52/229 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D++++ + E +L ++      + A AGSGKT +L  R   L+     +P  ++ +T T 
Sbjct: 3   LDMLNEQQREAVLTTE--GPLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++   S                                        + 
Sbjct: 61  KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I++++       ++F I D +  K L+++  K     + +D     +K F
Sbjct: 83  VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKR----LEIDTKMYKEKMF 138

Query: 193 YEILEISNDEDIE------TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             ++  + DE I+          D +  + AL +   + + L +   ++
Sbjct: 139 LNVISSAKDEMIDPIEFENRFTGDFVKRKQAL-VYKEYQNALKQNNALD 186


>gi|148244252|ref|YP_001218946.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326079|dbj|BAF61222.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA]
          Length = 1056

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             + ++  A D ++S  + A AGSGKT +L QR L+LL  +  P +++ +T TK A +E+
Sbjct: 2   NDQKQRRQALDVSQSFIIQAPAGSGKTELLTQRYLKLLSVSTSPESVIVMTFTKKAVSEL 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV+E +     L+      +  K          + +++ L   +L TP   K+ TI +
Sbjct: 62  TTRVIESL----ELAQGNRPKDPHKQIIYDLAFQVLERSKELDWQLLNTPERFKILTIDS 117

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I   +P +  +     I+       +  +A K TL +I     ++  ++    L+ 
Sbjct: 118 LSSLITSHYPSKNQLVPKKVISQNWARYSMYSQAAKQTLLAINELEYQDSVESILLYLD- 176

Query: 199 SNDEDIETLISDIISNRTALKLIFF 223
           +N +    LI+D+++ R    L  +
Sbjct: 177 NNIDRFYQLITDMLAKRDQWILKLY 201


>gi|291528122|emb|CBK93708.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 763

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 52/229 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D++++ + E +L ++      + A AGSGKT +L  R   L+     +P  ++ +T T 
Sbjct: 3   LDMLNEQQREAVLTTE--GPLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++   S                                        + 
Sbjct: 61  KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I++++       ++F I D +  K L+++  K     + +D     +K F
Sbjct: 83  VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKR----LEIDTKMYKEKMF 138

Query: 193 YEILEISNDEDIE------TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             ++  + DE I+          D +  + AL +   + + L +   ++
Sbjct: 139 LNVISSAKDEMIDPIEFENRFTGDFVKRKQAL-VYKEYQNALKQNNALD 186


>gi|120610596|ref|YP_970274.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1]
 gi|120589060|gb|ABM32500.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1]
          Length = 818

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 74/224 (33%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+     EQL A   P   A + A AGSGKT +L  R+  LL    A P ++L +T T  
Sbjct: 31  LLQNLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYASPGSILAVTFTNK 90

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM+ R+  ++                                           G+ +
Sbjct: 91  AAKEMTARLSAMLPV--------------------------------------NVRGMWI 112

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A + + F I D +        A K       +D      K   
Sbjct: 113 GTFHGLCNRLLRAHHKSAGLPATFQILDTQDQLS----AVKRLCKQFNIDEERFPPKQMA 168

Query: 194 EILEISNDEDIETLISDI--ISNRTALKLIFFFFSYLWRRKIIE 235
             +    +E +     D      R  ++L   +     R  +++
Sbjct: 169 YFISGCKEEGLRPGDVDARDADGRKKVELYQLYEEQCQREGVVD 212


>gi|257092577|ref|YP_003166218.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045101|gb|ACV34289.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 724

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++     QL A   P + A + A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 3   DLLANLNPPQLAAVTLPAQHALILAGAGSGKTRVLTTRIAWLISTGQVGPQGILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                           G+ 
Sbjct: 63  KAAKEMQSRLAAMLPI--------------------------------------NTRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    EA +   F I D          A K  L ++ +D+ +   +  
Sbjct: 85  IGTFHGLCNRLLRAHHREAGLPETFQILDAADQLS----AIKRLLKNLNVDDEKFPPREL 140

Query: 193 YEILEISNDEDIETLISDIISNRT--ALKLIFFFFSYLWRRKIIE 235
              +    ++ I    ++   + T   ++L   +     R  +++
Sbjct: 141 MHFINAHKEQGIRAAQAEAYDHYTSRRVELYTEYEGQCQREGVVD 185


>gi|256819097|ref|YP_003140376.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
 gi|256580680|gb|ACU91815.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
          Length = 1060

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 20/209 (9%)

Query: 28  SDPTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVL 83
           + P+ +  + +A+AGSGKT+ LV+  LR++L +  P     LL +T T  A  EM +R++
Sbjct: 2   NTPSANYTIYNASAGSGKTYSLVKAYLRIILGSKQPDLFRQLLAITFTNKAVFEMKNRII 61

Query: 84  EIITAWSH----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           E++  +S          +  E+ K     P++   +++   L  IL       + TI  F
Sbjct: 62  ELLGVFSEDKMLTKPHAMFTELAKELN-LPDEELRTRSAKALEHILHNYAAFNISTIDGF 120

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-- 197
              +++ F  + ++   F +  +  SK L+E A  + +      N+ EL +   +     
Sbjct: 121 NHQLIRHFSQDLHLNPFFEV--QLDSKALLERAVDNLMNQA--GNDPELTQLLIDFANEK 176

Query: 198 ISNDEDIETL-----ISDIISNRTALKLI 221
           I +D+  +T      ++++++N    K +
Sbjct: 177 IDDDKSWDTTKELLGVAEMLTNENHYKQL 205


>gi|223041651|ref|ZP_03611848.1| DNA helicase II [Actinobacillus minor 202]
 gi|223017515|gb|EEF15929.1| DNA helicase II [Actinobacillus minor 202]
          Length = 731

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 38/157 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDGLNDKQREAVSA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGIENIPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+   +   S                                     
Sbjct: 60  VTFTNKAAAEMRQRIEATLEQSS-----------------------------------HN 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+AN+   F I D E 
Sbjct: 85  MFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDTED 121


>gi|224826111|ref|ZP_03699214.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
 gi|224601748|gb|EEG07928.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
          Length = 715

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 52/228 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL+S    EQL A   P +SA V A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3   DLLSGLNPEQLSAVTWPAKSALVLAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 63  KAAREMQTRLGAMIPVNVKT--------------------------------------MW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C   ++    +A + S F I D        + A K  L S+ + + +   +A 
Sbjct: 85  IGTFHGLCNRFLRAHYRDAGLPSTFQILDSADQ----QAAIKRLLKSLDVSDEKFPPRAV 140

Query: 193 YEILEISNDEDIETLISDIISNRTA-----LKLIFFFFSYLWRRKIIE 235
              +  + +  +    +D +S   A     ++L   + +   R  +++
Sbjct: 141 QNFINGNKESGVR---ADALSAHDAYTKKLIELYAAYDAQCQREGVVD 185


>gi|218132415|ref|ZP_03461219.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992753|gb|EEC58755.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC
           43243]
          Length = 766

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 43/184 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++           + A AGSGKT +L  R+  L+     +P  +L +T T  AA+EM
Sbjct: 8   NEQQKQGVFTTEGPVLILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAASEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV ++++  +                                        + V T H+
Sbjct: 68  RERVDKVVSMGAEH--------------------------------------VWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I++++       ++F I D +  K ++ EA K     + +D+    ++A    +  
Sbjct: 90  MCVRILRRYIDRIGYDTNFTIYDSDDQKSIVREAIK----KLNIDSKTFKERAVLSAISA 145

Query: 199 SNDE 202
           + D 
Sbjct: 146 AKDN 149


>gi|293376176|ref|ZP_06622421.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909]
 gi|292645163|gb|EFF63228.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909]
          Length = 741

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 44/222 (19%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +    ++           V A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 5   LQNMNPQQKQAIETTEGPLLVMAGAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV ++I                                            + + 
Sbjct: 65  AREMKERVEKLIGDRGK--------------------------------------DVWIS 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY- 193
           T H+ C  I+++         +F I D+     +I    K+ +  + LD   +  K F  
Sbjct: 87  TFHSMCVRILRRDIDLIGYDLNFGILDDTDQLSVI----KTVMEELNLDPKRQSPKYFLN 142

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +I    N+      +     N   +++   +   L++   ++
Sbjct: 143 QISNAKNELKTPRDLRKEFENEDVIRVYEKYQQVLFKNNRVD 184


>gi|325838896|ref|ZP_08166702.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1]
 gi|325490637|gb|EGC92948.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1]
          Length = 741

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 44/222 (19%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +    ++           V A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 5   LQNMNPQQKQAIETTEGPLLVMAGAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV ++I                                            + + 
Sbjct: 65  AREMKERVEKLIGDRGK--------------------------------------DVWIS 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY- 193
           T H+ C  I+++         +F I D+     +I    K+ +  + LD   +  K F  
Sbjct: 87  TFHSMCVRILRRDIDLIGYDLNFGILDDTDQLSVI----KTVMEELNLDPKRQSPKYFLN 142

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +I    N+      +     N   +++   +   L++   ++
Sbjct: 143 QISNAKNELKTPRDLRKEFENEDVIRVYEKYQQVLFKNNRVD 184


>gi|254470528|ref|ZP_05083932.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062]
 gi|211960839|gb|EEA96035.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062]
          Length = 812

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +    +EQ LA +       V A AG+GKT +L  R+  +L    A P  +L +T T  
Sbjct: 45  YMEGLNAEQRLAVETINGPVLVLAGAGTGKTRVLTTRIAHILATGHATPGQILAVTFTNK 104

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   I                                          G   +
Sbjct: 105 AAREMKERIGAYIGE-------------------------------------NVEGMAWL 127

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T HA C  I+++      + S F+I D +   +LI++     + +  LD      K F 
Sbjct: 128 GTFHAICVKILRRHAELVGLKSSFSILDTDDQVRLIKQ----IIQAEGLDEKRWTAKTFA 183

Query: 194 EILEISNDEDI 204
            +L+   +  +
Sbjct: 184 GLLDSWKNRGL 194


>gi|266624561|ref|ZP_06117496.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
 gi|288863577|gb|EFC95875.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
          Length = 805

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 45/189 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D +++ + E            V A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 5   DTLNEVQRE--AVFHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +I+   +                                        + V
Sbjct: 63  AAGEMRERVDKIVGFGAE--------------------------------------SIWV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++       T++F I D +  + L+    +  L ++ LD      +A  
Sbjct: 85  STFHSSCVRILRRHIESLGYTTNFTIYDSDDQRTLM----RQVLKTLELDPKLYKDRAML 140

Query: 194 EILEISNDE 202
            ++  + +E
Sbjct: 141 SLISTAKNE 149


>gi|261838828|gb|ACX98594.1| ATP-dependent nuclease [Helicobacter pylori 51]
          Length = 949

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 15/188 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5   RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK--------ARHLLITILETPGGLKVQTIHAFCEA 142
             + E    +       K  +             A+ +    L     +++ TI AF ++
Sbjct: 65  KENLENEKEKEKSQNILKELEEKYRLDPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199
           I+++F     ++++F +   E +K   ++   S L+++     E+L     + L      
Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALDNKQLEKLSVFITQCLSYDSYT 180

Query: 200 NDEDIETL 207
           +D  +E L
Sbjct: 181 SDSILERL 188


>gi|17546954|ref|NP_520356.1| DNA helicase II protein [Ralstonia solanacearum GMI1000]
 gi|17429255|emb|CAD15942.1| probable dna helicase II protein [Ralstonia solanacearum GMI1000]
          Length = 829

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 46/230 (20%)

Query: 10  HSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
                +L++    EQ  A   P  SA + A AGSGKT +L  R+  L+ +    PS +L 
Sbjct: 33  SPRMSELLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLA 92

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM+ R+  ++                                         
Sbjct: 93  VTFTNKAAKEMTARLSAMLPI--------------------------------------N 114

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H  C  +++    +A +   F I D +        A K  L S+ +D+ + 
Sbjct: 115 TRGMWIGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKF 170

Query: 188 LKKAFYEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
             K     +  + ++ +     +I +  +R    L   + +   R  +++
Sbjct: 171 PPKNVQYFINGAKEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVD 220


>gi|322435329|ref|YP_004217541.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
 gi|321163056|gb|ADW68761.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 1165

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAA 75
             T + Q  A D  +S  V A AGSGKT +L+QR L+LL A+    P+ +L +T T+ A 
Sbjct: 15  DDTPARQQ-ALDIQQSWIVQAPAGSGKTGLLIQRFLKLLAADNVQDPAQVLAITFTRKAT 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RVL  + +    +      +   +      ++ + K R     +L++P  L ++T
Sbjct: 74  VEMRDRVLTQLQSAHTGTPPRNDFDRLTL---PLAQAVIEKDRRQGWNLLDSPHRLAIRT 130

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I + C  I +  P+ +      A+   E S  L  EA + TL  ++   ++ L  A   +
Sbjct: 131 IDSVCVDIARSLPILSGAAG--ALTPTEDSAPLHAEAARRTLM-LLGSEDKTLSTAIETV 187

Query: 196 L--EISNDEDIETLISDIISNRTAL 218
           L    +N  D+E LI+D++  R   
Sbjct: 188 LLHRDANLADVENLIADMLQVRDQW 212


>gi|291556731|emb|CBL33848.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Eubacterium siraeum
           V10Sc8a]
          Length = 1235

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 32/225 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKA 73
           +  T ++    +     A VSA AGSGKT +L QRV+RL+     N  PS ++ +T T+ 
Sbjct: 1   MKYTDAQIKAINQGRNPAIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTEK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+            + L  +         +   +   R  L          ++
Sbjct: 61  AANELKARL------------DALMRQRISEAVSSADVRFLRNQRMKLRKA-------RI 101

Query: 134 QTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            TI +FC +++++   L  +I++ F++ DE +S  L E+     L     + ++  +   
Sbjct: 102 STISSFCFSLLRENIDLVTDISAGFSLIDETRSTALKEDILSDVLEDFYANGDKADRDVI 161

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            E     +D  +  +I         L +     ++    K +++S
Sbjct: 162 VENYVAKDDRRLRDII---------LTVHEKAINHTEPEKWLDRS 197


>gi|254503334|ref|ZP_05115485.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222439405|gb|EEE46084.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 822

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ LA + T     V A AG+GKT +L  R+  +L +  A P  +L +T T 
Sbjct: 57  DYLTGLNPEQRLAVETTEGPLLVLAGAGTGKTRVLTTRIAHILASGLARPHEMLAVTFTN 116

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+   +                                          G   
Sbjct: 117 KAAREMKERIAVFVGG-------------------------------------NVEGMAW 139

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I+++      + S F+I D +   +LI++     + +  LD+     +AF
Sbjct: 140 LGTFHSICVKILRKHAELVGLKSGFSILDTDDQIRLIKQ----IIQAEGLDDKRWTARAF 195

Query: 193 YEILEISNDEDI 204
             +L+   +  +
Sbjct: 196 ATMLDGWKNRAL 207


>gi|257063577|ref|YP_003143249.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Slackia heliotrinireducens DSM 20476]
 gi|256791230|gb|ACV21900.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Slackia heliotrinireducens DSM 20476]
          Length = 1251

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 43/207 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHP-----STLLCLTH 70
           T  ++       R   +SA AGSGKT  L QR+   LL        P       ++ +T 
Sbjct: 7   TPPQRASVETLDRPLVISAGAGSGKTFTLTQRIAWALLPGSGEGGDPFVDSIDEVMAITF 66

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA E+  RV   + A   + + +                                  
Sbjct: 67  TTKAAQEIKARVKSTLRAEGMVEESLKV------------------------------DS 96

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH  C  I+++  LE  I   F + +E  +  ++E A ++ L+      + E   
Sbjct: 97  AWISTIHGMCSRILREHALEIGIDPAFTVLNEADATDMMERAIQTVLSQADELMSPEGMD 156

Query: 191 AFYEILEIS----NDEDIETLISDIIS 213
             +    I       E IE +I  + +
Sbjct: 157 GLFAEYSIRPNAFGGESIERMIRSLAN 183


>gi|305665916|ref|YP_003862203.1| ATP-dependent helicase [Maribacter sp. HTCC2170]
 gi|88710691|gb|EAR02923.1| ATP-dependent helicase [Maribacter sp. HTCC2170]
          Length = 1037

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           +A+AGSGKTH L +  L+++L++ +    +L +T T  A  EM  R+L  +  +S+  + 
Sbjct: 10  NASAGSGKTHTLTKEYLKIVLSSPNSYGQILAITFTNKAVNEMKERILSSLFEFSNTDEV 69

Query: 96  ILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
             ++ +      + +    +   KA+  L  IL   G   + TI  F   I++ F  +  
Sbjct: 70  GNASVLFSDLMSELDLEVDALRKKAKRTLKDILHNYGFFDISTIDKFTHRIIRTFAKDLK 129

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           I  +F +  +     L+ EA    L  +  D         + + +I+ D+  +
Sbjct: 130 IAQNFEVVLDTD--LLLSEAVDKLLEKVGQDKKMTKVLMDFALEKINEDKTWD 180


>gi|291547104|emb|CBL20212.1| Superfamily I DNA and RNA helicases [Ruminococcus sp. SR1/5]
          Length = 760

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + E   A        + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 22  DALDTLNPMQRE--AAVHTEGPLLILAGAGSGKTRVLTHRIAYLMEEKGVNPWNILAITF 79

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA+EM  RV +I    +                                        
Sbjct: 80  TNKAASEMRERVNKIAGMGAE--------------------------------------S 101

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + V T H+ C  I+++        S+F I D +  K +++E  +  
Sbjct: 102 VWVSTFHSACVRILRRHIEVLGFGSNFTIYDADDQKTVMKEIFRKF 147


>gi|313207052|ref|YP_004046229.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868]
 gi|312446368|gb|ADQ82723.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868]
 gi|315022554|gb|EFT35581.1| ATP-dependent helicase [Riemerella anatipestifer RA-YM]
 gi|325335511|gb|ADZ11785.1| UvrD/REP helicase [Riemerella anatipestifer RA-GD]
          Length = 1044

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 15/210 (7%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +SA+AGSGKT+ LV R+L L L          +L LT T  AA EM  R+L+ + A++  
Sbjct: 7   ISASAGSGKTYTLVIRILSLCLRTPDEKAIRYILALTFTNKAANEMKERILQWLEAFTR- 65

Query: 93  SDEILSAEITKI------QGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQ 145
            D + + E+  I      QG K    D+  +++ +L  IL     L + TI  F   +++
Sbjct: 66  EDYLQNNELKAIQSYLETQGIKLTIEDLHYRSKKVLDYILHHYSILNIGTIDKFNAKLVR 125

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
            F  E  +  +F +  E  ++  + EA    L  I  D    + +AF + +  + + +  
Sbjct: 126 SFSYELGLAQNFNL--EINNEPYLIEAVDQLLDKIGEDPK--VSEAFMDFVNYNLENEER 181

Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             ++  + +R    +    +  L + +  +
Sbjct: 182 INVNKTLYDRAKTFVNDVHYEELRKNEAFD 211


>gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas arsenicoxydans]
 gi|133737450|emb|CAL60493.1| DNA helicase II [Herminiimonas arsenicoxydans]
          Length = 762

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P + A + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3   NLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                           G+ 
Sbjct: 63  KAAKEMMTRLSAMMPI--------------------------------------NTRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D +    +I    K  L +  +D+ +   +  
Sbjct: 85  IGTFHGLCNRLLRAHYRDAALPQTFQILDSQDQLSMI----KRLLKANNIDDEKYPPRNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + D  +     +     NR  ++L   +     R  +++
Sbjct: 141 MYFINGAKDNGLRAQDVEAHDDYNRKMVELYEIYDQQCQREGVVD 185


>gi|54310566|ref|YP_131586.1| DNA-dependent helicase II [Photobacterium profundum SS9]
 gi|46915009|emb|CAG21784.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           SS9]
          Length = 724

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 48/231 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+ +  A   +++ 
Sbjct: 2   DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLMQIEQASSYSVMS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+ E++   S                                     
Sbjct: 60  VTFTNKAAAEMRGRINELMEGSS------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+   T H  C  +++   L+A +   F I D +   +L+    +  + +  LD    
Sbjct: 83  -AGMWNGTFHGLCHRMLRAHYLDARLPDDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137

Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235
             +     +    DE +     D  ++   +T L++   +     R  +++
Sbjct: 138 PARQAAWYINGKKDEGLRPANIDAFNDPVEKTWLRIYTAYQEACDRAGLVD 188


>gi|319793174|ref|YP_004154814.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315595637|gb|ADU36703.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 1086

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 13/204 (6%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----PSTLLCLTHTKAAAAEMSHR 81
           +A DP RS  V A AG+GKT +LV R+LR LL        P  +L +T TK AA EM  R
Sbjct: 21  VACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGDSACEPHEILAITFTKKAAGEMRER 80

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNK-SDMSKARHLLITILETPGGLKVQTIHAFC 140
           + + +  ++  S E L  ++     +     + + + + L   +LE    ++ +T HA+ 
Sbjct: 81  LDQWLEQFAEESPEELVKQLVMRGVEPAAALAAVPRLKGLYRRLLEGGRPVQFRTFHAWF 140

Query: 141 EAIMQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
             +++  PL    E  + S++ + +++   +      +    ++  D        +Y ++
Sbjct: 141 AGLLRNAPLAVLRELGLPSNYELLEDDAEAR--GHTWRPFFEAVTADKLA--LADYYAVV 196

Query: 197 EISNDEDIETLISDIISNRTALKL 220
                      + + ++ R    L
Sbjct: 197 ATHGRSQTAKALGEALTKRVEFSL 220


>gi|269215715|ref|ZP_06159569.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122]
 gi|269131202|gb|EEZ62277.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122]
          Length = 770

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 45/190 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D ++  + E +L ++      V A AGSGKT +L  R+  +L      P  +L +T T 
Sbjct: 4   LDTLNGPQREAVLCTE--GPLLVLAGAGSGKTRVLTYRIAHMLEDLGIQPWQILAITFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  ++   +                                       G+ 
Sbjct: 62  KAAAEMRERLGRLVGPAAR--------------------------------------GMW 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I++        +  F I D++ SK+L     K  +A + +D       A 
Sbjct: 84  VSTFHSMCVRILRTDCERLGFSQGFTIYDDDDSKRL----VKDIMAELNIDPKRWPVNAI 139

Query: 193 YEILEISNDE 202
              +  + +E
Sbjct: 140 RSRISAAKNE 149


>gi|154506234|ref|ZP_02042972.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149]
 gi|153793733|gb|EDN76153.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149]
          Length = 744

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 52/205 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D +++ + E +  +D      + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 5   DTLNEQQREAVYCTD--GPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   S                                        + V
Sbjct: 63  AAGEMRERVDNLVGFGSE--------------------------------------SIWV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-----------KKSTLASIML 182
            T H+ C  I+++        ++F I D +  K L+++            K+  L + + 
Sbjct: 85  STFHSTCVRILRRHIDRLGYDTNFTIYDTDDQKTLMKDVCKLVEIDTKVYKERNLLAAIS 144

Query: 183 DNNEELKKAFYEILEISNDEDIETL 207
               E+  A    L    D   E +
Sbjct: 145 SAKNEMISAQEYALNAQGDFGKEKI 169


>gi|315634405|ref|ZP_07889692.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC
           33393]
 gi|315476995|gb|EFU67740.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC
           33393]
          Length = 724

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 38/158 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2   DFAELLDGLNDKQREAVSA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGVSEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+  ++   +                           + L       
Sbjct: 60  VTFTNKAAAEMRHRIESVLFDGN---------------------------QRLF------ 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ V T H+    +++   L+A++   F I D E  
Sbjct: 87  --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQ 122


>gi|320168377|gb|EFW45276.1| ATP-dependent DNA helicase Rep [Capsaspora owczarzaki ATCC 30864]
          Length = 1072

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 37/163 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +DL S  + ++   + P     V A  GSGKT ++V RV  L+     P T+L +T T  
Sbjct: 17  VDLSSMNEQQRAAVTAPGGVVCVVAGPGSGKTRVIVHRVAHLIQTGTDPRTILLVTFTNK 76

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+         L  E L+  +                                
Sbjct: 77  AAAEMKSRLQ-------LLVQEPLAKLVMA------------------------------ 99

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C   +++   +  ++S+F+I D E  K L++   +  
Sbjct: 100 GTFHSVCARFLRRHARDVGLSSNFSIIDTEDVKALLKRVIQEL 142


>gi|302524115|ref|ZP_07276457.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4]
 gi|302433010|gb|EFL04826.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4]
          Length = 804

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 93/258 (36%), Gaps = 72/258 (27%)

Query: 13  TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           T DL+      Q  A +       V A AGSGKT +L +R+  LL     HP  ++ +T 
Sbjct: 20  TADLLEDLNPAQREAVTHAGGPLLVVAGAGSGKTRVLTRRIAYLLAERGVHPGEIMAITF 79

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV  ++   +                                        
Sbjct: 80  TNKAAAEMRERVAALVGKRA--------------------------------------NA 101

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-------------- 176
           + V T H+ C  I+++     +++S F+I D + +K+LI    +                
Sbjct: 102 MWVSTFHSMCVRILRREAKTLDMSSSFSIYDSDDTKRLITLVARDLDIDPKKYAARTLAV 161

Query: 177 ----LASIMLDNNEELKKAFYEI--------------LEISNDEDIETLISDIISNRTAL 218
               L + ++D  +   KA  ++              L  +N  D + LI   +S   A 
Sbjct: 162 HISNLKNELVDPEQAASKAANDLERRVAEVYAEYQRRLSSANAFDFDDLIMRTVSLLQAF 221

Query: 219 KLIFFFFSYLWRRKIIEK 236
             +  ++   +R  ++++
Sbjct: 222 PDVAEYYRRRFRHVLVDE 239


>gi|240950109|ref|ZP_04754404.1| DNA-dependent helicase II [Actinobacillus minor NM305]
 gi|240295410|gb|EER46179.1| DNA-dependent helicase II [Actinobacillus minor NM305]
          Length = 731

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 38/157 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N   S +L 
Sbjct: 2   DFSLLLDSLNDKQREAVSA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGIENIPESNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  R+   +   S                                     
Sbjct: 60  VTFTNKAAAEMRQRIEATLEQSS-----------------------------------HN 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             G+ V T H+    +++   L+AN+   F I D E 
Sbjct: 85  MFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDTED 121


>gi|283796111|ref|ZP_06345264.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
 gi|291076326|gb|EFE13690.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
          Length = 830

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
            DL++    +Q           V A AGSGKT +L  R+  L+     +P  ++ +T T 
Sbjct: 5   FDLLN--PKQQEAVFHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV +I+   S                                        + 
Sbjct: 63  KAAAEMRERVDQIVGFGSE--------------------------------------SIW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I+++        + F I D +  + L+++  K  
Sbjct: 85  VSTFHSSCVRILRRHIDRLGYDTSFTIYDTDDQRTLMKQIFKRL 128


>gi|241663638|ref|YP_002981998.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240865665|gb|ACS63326.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 786

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++    EQ  A   P  SA + A AGSGKT +L  R+  L+ +    PS +L +T T 
Sbjct: 3   DLLANLNPEQRAAITLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ R+  ++                                            + 
Sbjct: 63  KAAKEMTARLQAMLPI--------------------------------------NTRAMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D +        A K  L S+ +D+ +   K  
Sbjct: 85  IGTFHGLCNRLLRAHFRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     +I +  +R    L   + +   R  +++
Sbjct: 141 QYFINGAKEQGLRAGDLEIANEYDRRMADLYAAYDAQCQREGVVD 185


>gi|226947672|ref|YP_002802763.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str.
           Kyoto]
 gi|254802143|sp|C1FSA8|ADDA_CLOBJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|226844297|gb|ACO86963.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str.
           Kyoto]
          Length = 1279

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 80/219 (36%), Gaps = 35/219 (15%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  ++        +  V+A AG+GKT +LVQR++  +L    P     LL +T T AAA
Sbjct: 6   WTDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + I+               K   + P    + K   LL           + T
Sbjct: 66  AEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NKSNIMT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++       I  +F I DE +   + +EA       +    NE+        
Sbjct: 104 IHSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFINLVESY 163

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                         DI      L+L  F  S  +    +
Sbjct: 164 ASRK----------DIRLQEVVLELHRFAKSAPFPYTWL 192


>gi|58040813|ref|YP_192777.1| DNA helicase II [Gluconobacter oxydans 621H]
 gi|58003227|gb|AAW62121.1| DNA helicase II [Gluconobacter oxydans 621H]
          Length = 740

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 44/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           S T + +S+   EQ  A + T     + A AG+GKT +L  R   +LL   A+PS +L +
Sbjct: 7   SPTPEYLSRLNPEQRRAIETTEGPLLILAGAGTGKTRVLTTRFAHILLTGRAYPSQILAV 66

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 67  TFTNKAAREMRERVSAILGEPAE------------------------------------- 89

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
            GL + T HA C  ++++      +TS F I D +   +L+++     +    +D     
Sbjct: 90  -GLWLGTFHAICARMLRRHAEYVGLTSSFNILDTDDQIRLLKQ----VMEPWKIDTKRWP 144

Query: 189 KKAFYEILEISNDEDI 204
                 I++   D  +
Sbjct: 145 PNQLMGIIQRWKDRGL 160


>gi|254515937|ref|ZP_05127997.1| DNA helicase II [gamma proteobacterium NOR5-3]
 gi|219675659|gb|EED32025.1| DNA helicase II [gamma proteobacterium NOR5-3]
          Length = 717

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +  ++  + E + A     +  V A AGSGKT +LV R+  L+      P  LL 
Sbjct: 2   DVSDILTGLNDAQREAVAAD--RGNMLVLAGAGSGKTRVLVHRIAWLIRAEGLSPHALLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++   +H                                    
Sbjct: 60  VTFTNKAAREMRGRIEHMLQIPTH------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + V T H     +++    EA +  +F I D +   +L++   +     + LD +  
Sbjct: 84  --SMWVGTFHGLAHRLLKTHWKEARLPQNFQILDSDDQLRLVKRVCR----ELQLDESRW 137

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    DE +  
Sbjct: 138 PPKQAQWYINAQKDEGLRA 156


>gi|149376496|ref|ZP_01894257.1| DNA-dependent helicase II [Marinobacter algicola DG893]
 gi|149359163|gb|EDM47626.1| DNA-dependent helicase II [Marinobacter algicola DG893]
          Length = 721

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ID ++  + E + A        V A AGSGKT +LV R+  L+ +    P+ +L 
Sbjct: 2   DVSHIIDALNDAQREAVTAQ--NDHLLVLAGAGSGKTRVLVHRIAWLMQVDKVPPTGILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM +R+ +++   +                                     
Sbjct: 60  VTFTNKAAKEMRYRIEQMMHIPAR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             GL   T H     +++    +A +  +F + D +   +LI    K  +  + +D +  
Sbjct: 84  --GLWFGTFHGIAHRLLRAHHQDAGLPENFQVLDSDDQLRLI----KRVMRELEIDESRW 137

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    DE +  
Sbjct: 138 PPKQAQWFINGQKDEGLRA 156


>gi|168181307|ref|ZP_02615971.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf]
 gi|237793761|ref|YP_002861313.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str.
           657]
 gi|259710033|sp|C3L047|ADDA_CLOB6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|182675388|gb|EDT87349.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf]
 gi|229262225|gb|ACQ53258.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str.
           657]
          Length = 1279

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 26/196 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T  ++        +  V+A AG+GKT +LVQR++  +L    P     LL +T T AAA
Sbjct: 6   WTDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + I+               K   + P    + K   LL           + T
Sbjct: 66  AEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NKSNIMT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  +++       I  +F I DE +   + +EA       +    NE+        
Sbjct: 104 IHSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFINLVESY 163

Query: 196 LEISNDEDIETLISDI 211
                D  ++ ++ ++
Sbjct: 164 AS-RKDIRLQGVVLEL 178


>gi|71906186|ref|YP_283773.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB]
 gi|71845807|gb|AAZ45303.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB]
          Length = 713

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++   S QL A   P   A + A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 3   DLLANLNSPQLQAVTLPPVHALILAGAGSGKTRVLTTRIAWLISTGQVGPHGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ R+  ++                                           G+ 
Sbjct: 63  KAAKEMTARLSSLVPI--------------------------------------NVRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    EA +   F I D      +     K  L ++ +D+ +   +  
Sbjct: 85  IGTFHGLCNRLLRAHFREAGLPQTFQILDSADQLAM----VKRLLKNLNIDDEKYPPREL 140

Query: 193 YEILEISNDEDIETLISDIISNRTA--LKLIFFFFSYLWRRKIIE 235
              +    ++ +    ++   N T   +++   + +   R  + +
Sbjct: 141 CHFINAHKEQGVRAAQAEAYDNYTQKRVEIYAEYENQCNREGVCD 185


>gi|92115386|ref|YP_575314.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM
           3043]
 gi|91798476|gb|ABE60615.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM
           3043]
          Length = 739

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E    S P  +  V A AGSGKT +LV R+  L+ +    P  +L 
Sbjct: 8   DVSPLLDSLNTAQRE--AVSHPQGNLLVLAGAGSGKTRVLVHRIAWLMQVEGLSPYAILA 65

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++                                        +
Sbjct: 66  VTFTNKAAREMRTRLEALLG--------------------------------------LS 87

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + V T H+    +++    +A +  HF I D +   +L     K  L    +D+   
Sbjct: 88  LRNMWVGTFHSIAHRLLRTHWHDARLPQHFQIIDGDDQLRL----VKRLLKDHRIDDERF 143

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    +E +  
Sbjct: 144 PPKQVQYFISGCKEEGLRA 162


>gi|225157628|ref|ZP_03725018.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
 gi|224802695|gb|EEG20948.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
          Length = 678

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 41/236 (17%)

Query: 5   NSFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +S    + TID   +   EQL A + P     V A AGSGKT  L  RV  LL     P 
Sbjct: 12  DSAATTAATIDFAYELNEEQLAAVTAPPGPLLVLAGAGSGKTRTLTYRVAWLLAQGIKPW 71

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT T  AA EM HRV ++                                      
Sbjct: 72  QILLLTFTNKAAKEMLHRVQDLTGVE---------------------------------- 97

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
               PG     T H+    I++       ++ +F I D + S+ ++++A +S       +
Sbjct: 98  ----PGRFWGGTFHSIGSRILRMHGDAIGVSKNFTILDADDSETILKQAVESADRLFFKN 153

Query: 184 NNEELKKAFYEILEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                    + +L ++ +  + I   +         +   F  F+  ++++  E++
Sbjct: 154 KTNPKPGPLHSVLSLARNTCQTIAATVEKYFPQYQDISQKFPAFADAYQKRKREQN 209


>gi|300782729|ref|YP_003763020.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
           mediterranei U32]
 gi|299792243|gb|ADJ42618.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
           mediterranei U32]
          Length = 804

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +E +D ++  + E    +       V A AGSGKT +L +R+  LL     HP  ++ +T
Sbjct: 22  AELLDDLNPAQRE--AVTHAGGPLLVVAGAGSGKTRVLTRRIAYLLGQRRVHPGEIMAIT 79

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV  ++   +                                       
Sbjct: 80  FTNKAAAEMRERVAALVGRRA--------------------------------------N 101

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++     +++S F+I D + +K+LI    +  
Sbjct: 102 AMWVSTFHSMCVRILRREAKVLDMSSSFSIYDSDDTKRLITLVARDL 148


>gi|308234140|ref|ZP_07664877.1| UvrD/REP helicase [Atopobium vaginae DSM 15829]
 gi|328943635|ref|ZP_08241100.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829]
 gi|327491604|gb|EGF23378.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829]
          Length = 868

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ID ++  + + +L +       V A AGSGKT +L  R+  L+      P ++L +T T 
Sbjct: 41  IDSLNPQQKQAVLCT--QGPLLVLAGAGSGKTRVLTYRIAYLIEEQGVSPWSILAITFTN 98

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 99  KAAKEMRERIEALLPGRTQ--------------------------------------GMW 120

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T HA C  I++        + +F I D + +K+LI+      
Sbjct: 121 VSTFHAMCVRILRTHAERLGYSKNFTIYDTDDTKRLIKHIMGDL 164


>gi|182625530|ref|ZP_02953301.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str.
           JGS1721]
 gi|177909218|gb|EDT71683.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str.
           JGS1721]
          Length = 751

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1   MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 61  KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +  F I D    K LI+   K  
Sbjct: 83  ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126


>gi|300703480|ref|YP_003745082.1| DNA helicase II [Ralstonia solanacearum CFBP2957]
 gi|299071143|emb|CBJ42456.1| DNA helicase II [Ralstonia solanacearum CFBP2957]
          Length = 791

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P  SA + A AGSGKT +L  R+  L+ ++   PS +L +T T 
Sbjct: 3   DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSSRVSPSGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ R+  ++                                            + 
Sbjct: 63  KAAKEMTARLSAMLPI--------------------------------------NTRAMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D +        A K  L S+ +D+ +   K  
Sbjct: 85  IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     +I +  +R    L   + +   R  +++
Sbjct: 141 QYFINGAKEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVD 185


>gi|319442768|ref|ZP_07991924.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
           DSM 44702]
          Length = 931

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L     +++           + A AGSGKT +L +RV  LL     P  +L +T T  AA
Sbjct: 113 LAGLNPAQRAAVVHHGSPLLIVAGAGSGKTSVLTRRVAWLLAHGVAPWQILAITFTNKAA 172

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  RV +++   +                                        + + T
Sbjct: 173 AEMRERVTDLVGPVAE--------------------------------------RMWLST 194

Query: 136 IHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS 175
            H+ C  I++        + ++F I D +  K+LI    K 
Sbjct: 195 FHSLCVRILRANAQLIEGLNTNFTIYDSDDQKRLITMVLKD 235


>gi|227874195|ref|ZP_03992397.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
 gi|227839950|gb|EEJ50378.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
          Length = 793

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K +   A+       + A AGSGKT +L  R+  L+L     P  +L +T T  AA EM
Sbjct: 8   NKEQYEAATHGEGPLLILAGAGSGKTRVLTHRIAYLILEKGISPYQILAITFTNKAAQEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                       E  G + V T H+
Sbjct: 68  RDRVNQLLP--------------------------------------ERQGEIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++        S F+I D +  K ++ +  K  
Sbjct: 90  MCLRILRREIGNLGYDSDFSIYDTDDQKTVMRQVFKEL 127


>gi|90408773|ref|ZP_01216918.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
 gi|90310117|gb|EAS38257.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
          Length = 722

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLC 67
           + S  ID ++    ++   S P ++  V A AGSGKT +L  R+  LL     P+  +L 
Sbjct: 2   DVSYLIDGLNDF--QRAAVSCPQQNMLVLAGAGSGKTRVLTHRIAWLLEVEHIPTYGILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  I                                        + 
Sbjct: 60  VTFTNKAAKEMRARINAICP--------------------------------------QQ 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++    EAN+  HF I D +  +K+I    K  +  + LD+   
Sbjct: 82  ISGMWIGTFHGIAHRLLRLHFQEANLPEHFQIIDSDDQQKMI----KRLIKVLNLDDKYY 137

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    DE +  
Sbjct: 138 PAKELQWYINDKKDEGLRA 156


>gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           1002]
          Length = 785

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 52/196 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
              +Q           + A AGSGKT +L +R+  L+ +    P  +L +T T  AAAEM
Sbjct: 6   NPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNKAAAEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 66  RERVAHLVGPIA--------------------------------------SRMWVSTFHS 87

Query: 139 FCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
            C  I+++   L A + S+F I D + SK+L        LA I  D N ++KK    +L 
Sbjct: 88  TCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKFTPRLL- 138

Query: 198 ISNDEDIETLISDIIS 213
                 I  L +++IS
Sbjct: 139 ---GAGISNLKNELIS 151


>gi|269796104|ref|YP_003315559.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542]
 gi|269098289|gb|ACZ22725.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542]
          Length = 857

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 70/190 (36%), Gaps = 44/190 (23%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     +Q  A +   S   + A AGSGKT +L  R+  LL    A PS +L +T T 
Sbjct: 26  ELVEGLNPQQREAVEHGGSPLLIVAGAGSGKTRVLTHRIAHLLATGRARPSEILAITFTN 85

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV  I+   +                                      G + 
Sbjct: 86  KAAAEMRERVAAIVGPAA--------------------------------------GRMW 107

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I+++      +   F+I D   S++LI       L  + LD  +   K  
Sbjct: 108 VSTFHSACVRILRREAKSLGLRQSFSIYDSADSQRLI----TMVLRELDLDPKKFPAKQL 163

Query: 193 YEILEISNDE 202
              +    DE
Sbjct: 164 QNKISSLKDE 173


>gi|92117527|ref|YP_577256.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91800421|gb|ABE62796.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
          Length = 1110

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 8/205 (3%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + ++   ++ +   +   R+  V A AGSGKT ++  RV  LL     P  +  +T T+ 
Sbjct: 1   MTVLPDIEARKTALTAVNRTLLVEAGAGSGKTSVMAGRVAVLLSKGTEPKHIAAITFTEF 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+E+  R+    T  S      L      +    P+  + +  +  L   L     L  
Sbjct: 61  AASELRQRIERFTTELS------LGRVPKDLLQAFPDGVEAA-QKENLSRALGAFDQLMC 113

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH F +A+++ +P EANI     I D  +++   +E   + L S +  ++++   A  
Sbjct: 114 GTIHGFAQALIKPYPAEANIDPGADIVDPAEAELAFQERYDAWLRSQLSGDHDDGLVAQI 173

Query: 194 EILEISNDEDIETLISDII-SNRTA 217
            + ++         ++  +  NR A
Sbjct: 174 VLSDVDGGLKFVAEVAQFLRKNRDA 198


>gi|18311242|ref|NP_563176.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens str. 13]
 gi|18145925|dbj|BAB81966.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
          Length = 751

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1   MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 61  KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +  F I D    K LI+   K  
Sbjct: 83  ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126


>gi|168213169|ref|ZP_02638794.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str.
           F4969]
 gi|170715249|gb|EDT27431.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str.
           F4969]
          Length = 751

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1   MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 61  KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +  F I D    K LI+   K  
Sbjct: 83  ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126


>gi|148652066|ref|YP_001279159.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
 gi|148571150|gb|ABQ93209.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
          Length = 742

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 32/213 (15%)

Query: 4   HNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           HNS    SE +D   +    QL  A+       V A AGSGKT  L  R   L+ + A P
Sbjct: 70  HNSVLSSSE-VDYAGELNPSQLLAATTTEGKVLVIAGAGSGKTKTLTYRTSYLIESGASP 128

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           S++L LT T+ AA E+  RV  ++      +  +   ++  I                  
Sbjct: 129 SSILLLTFTRKAANEIKGRVKSLLAESLADNRALSGLDLNAITS---------------- 172

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIM 181
                       T H+FC  +++++     I   F I D   S+  ++   K+  +    
Sbjct: 173 -----------GTFHSFCNMLLRRYSGLLGINPKFTILDTGDSEDALDMICKEQGIVRKN 221

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISN 214
           +      KK    ++  S +  I  L+ D+I N
Sbjct: 222 MKQAFPRKKTLQNLISTSRNRHI--LLRDLIEN 252


>gi|21673182|ref|NP_661247.1| DNA helicase II [Chlorobium tepidum TLS]
 gi|21646262|gb|AAM71589.1| DNA helicase II [Chlorobium tepidum TLS]
          Length = 759

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 40/170 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           +  ++ +  ++  + + +LA++      V A AGSGKT ++  R+  L+      P  +L
Sbjct: 10  EALTDFLQGLNDVQRQAVLATE--GPVMVLAGAGSGKTRVITYRIAHLIRNVGVLPQNIL 67

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T  AA EM  R+  I+   S                                    
Sbjct: 68  ALTFTNKAAGEMRQRIDSILEYGS------------------------------------ 91

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               L + T H+    +++ +        +F+I D + SK LI++  K  
Sbjct: 92  -ASSLWIGTFHSVFARLLRSYIHLIGYDRNFSIFDADDSKSLIKQCMKEL 140


>gi|257054559|ref|YP_003132391.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
           43017]
 gi|256584431|gb|ACU95564.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
           43017]
          Length = 817

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
            H   +D ++   +++       R   + A AGSGKT +L +R+  LL A   HP  ++ 
Sbjct: 17  SHGPLLDDLN--PAQRAAVEHQGRPLLIVAGAGSGKTRVLTRRIAYLLAARGVHPGQIMA 74

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV++++   +                                     
Sbjct: 75  ITFTNKAAAEMRDRVVDLVGGRA------------------------------------- 97

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            G + V T H+ C  ++++      +TS+F+I D + S++L+    +  
Sbjct: 98  -GAMWVSTFHSMCVRLLRREAKTLELTSNFSIYDADDSRRLMALVGRDL 145


>gi|169347181|ref|ZP_02866123.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str.
           JGS1495]
 gi|169296864|gb|EDS78993.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str.
           JGS1495]
          Length = 751

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1   MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 61  KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +  F I D    K LI+   K  
Sbjct: 83  ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126


>gi|225568813|ref|ZP_03777838.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM
           15053]
 gi|225162312|gb|EEG74931.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM
           15053]
          Length = 743

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + +Q           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 8   NEQQQEAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  I+   S                                        + V T H+
Sbjct: 68  RERVDNIVGFGSE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            C  I+++   +    ++F I D +  K L+++  +
Sbjct: 90  TCVRILRRHIDKLGYDTNFTIYDSDDQKTLMKDVCR 125


>gi|323141943|ref|ZP_08076800.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413578|gb|EFY04440.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium
           sp. YIT 12067]
          Length = 1140

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 78/169 (46%), Gaps = 21/169 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAA 75
           + T  + L  +    +  + A AGSGKT++L++R +++L ++   +P+ ++ +T T+ AA
Sbjct: 14  NPTPEQALAINTIKSNVSLLAGAGSGKTYVLMKRFVQILRSDLSVNPTNIVAITFTRKAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV + +                        ++D+ + R      L+      + T
Sbjct: 74  DEIKGRVRQAVGECVEQ-----------------AQTDLERLR--WQEHLQKVESAPIST 114

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           IH+ C  I++  P+E  +   F I ++ +++   +E  +  L   + +N
Sbjct: 115 IHSLCSRILRDNPVETQLDPEFTILEDFEAQDFFKETLQQFLRKNIKEN 163


>gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_1322 [Methanocorpusculum labreanum Z]
 gi|124363681|gb|ABN07489.1| UvrD/REP helicase [Methanocorpusculum labreanum Z]
          Length = 1057

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 40/232 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-----ANAHPSTLLCLTH 70
           + ++    Q  A     S  V+A AG+GKT +L +R +  L       +   S +L LT+
Sbjct: 1   MTAELTEAQRRALFMEESVCVTAGAGTGKTFLLTKRYIAALTYRRETMHTGASDILALTY 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  ++   +   +    E                         L  + E+   
Sbjct: 61  TDKAAAEMRTKIGRELKKAAEEDPE-------------------------LEGVWESFSR 95

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T H FC +++++F  EA + + F++ DE  + +L       T+  ++      L  
Sbjct: 96  CSISTFHGFCLSLLKEFAYEAGLDAGFSVMDELDTHEL----VTGTIREMLEHPPATLFG 151

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL------WRRKIIEK 236
               + +   +  I   +  ++    A                 W++   E+
Sbjct: 152 DVVTLFDHLREATIAGYLQSLMRIEGAKDWFSLLEKNPSAVIAVWQKAWDEE 203


>gi|87121050|ref|ZP_01076941.1| DNA helicase II [Marinomonas sp. MED121]
 gi|86163542|gb|EAQ64816.1| DNA helicase II [Marinomonas sp. MED121]
          Length = 735

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           + S  +D ++  + E + A  P ++  + A AGSGKT +LV R+  L+ A    P +++ 
Sbjct: 2   DVSFILDSLNDKQREAVAA--PLQNTLILAGAGSGKTRVLVHRIAWLMHAYEVSPFSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ +++                                         
Sbjct: 60  VTFTNKAAKEMQARIEQLVGVP-------------------------------------- 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P G+ V T H     +++    +A +  +F I D +   ++     K  +    +D    
Sbjct: 82  PQGMWVGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQLRM----VKRLMREQNIDETRW 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    DE 
Sbjct: 138 PPKQVCWYINGQKDEG 153


>gi|256821959|ref|YP_003145922.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
 gi|256795498|gb|ACV26154.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
          Length = 1138

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I   K+ Q  A D TRS  V A AGSGKT +L QRVL+LL    +P  ++ +T T  AA
Sbjct: 1   MIQDLKARQE-AIDHTRSFIVQAPAGSGKTELLTQRVLKLLAVVQNPEEVVAITFTNKAA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R+++ + +      +    +  K+   +  KS + + + L   ++ +P  L+++T
Sbjct: 60  REMQNRIMQSLYSAQGPKPD----QPHKVLTWELAKSVLQRDQELDWGLMHSPHRLRIKT 115

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
             + C  I  Q P+ A      +  +     +L  +A KS +  +     E      + +
Sbjct: 116 FDSLCATIANQMPVLAKFGGQLSPTENP--YELYYQAAKSVVDGV--KTQEAWAGHVHRV 171

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           L  ++++  +             + +         R I+E+    +
Sbjct: 172 LAHTDNKVEQLQELLAQQLAKRDQWLRLEQEGTAERDILEQGFIDV 217


>gi|323127008|gb|ADX24305.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 1210

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 27/224 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+ 
Sbjct: 30  TPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELR 89

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + + A    + + L                    +  L   L+      + T+ AF
Sbjct: 90  ERIEKKLYAEIAKTSDSL-------------------LKAYLTDQLQALSQADIGTMDAF 130

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     I+  F I  D+ +   L  +         M  ++  L KA  +    
Sbjct: 131 AQKVLIRYGYSIGISPQFRIMQDKAEQDILKRDVFSKLFEEFMTQDDPSLFKALVK--NF 188

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           S +    +   +++          F  S    ++ +E++    A
Sbjct: 189 SGNRKDASSFREVV-----YSCYSFSQSTENPKQWLEETFLKAA 227


>gi|307332408|ref|ZP_07611476.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu
           4113]
 gi|306881942|gb|EFN13060.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu
           4113]
          Length = 824

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           S  +D +++   ++           + A AGSGKT +L  R+  LL     HP  +L +T
Sbjct: 70  SALLDGLNE--QQRAAVEHTGSPLLIVAGAGSGKTRVLTHRIAYLLGARGTHPGQILAIT 127

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV E++   +                                       
Sbjct: 128 FTNKAAGEMKERVEELVGPRA--------------------------------------N 149

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 150 AMWVSTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMSLVCRDL 196


>gi|296158133|ref|ZP_06840965.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295891469|gb|EFG71255.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 783

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMSRLSALLPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A + + F I D          A K  +  + +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185


>gi|168205088|ref|ZP_02631093.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str.
           JGS1987]
 gi|170663345|gb|EDT16028.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str.
           JGS1987]
          Length = 751

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1   MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 61  KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +  F I D    K LI+   K  
Sbjct: 83  ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126


>gi|170756184|ref|YP_001780091.1| recombination helicase AddA [Clostridium botulinum B1 str. Okra]
 gi|251764513|sp|B1IEN0|ADDA_CLOBK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|169121396|gb|ACA45232.1| ATP-dependent nuclease subunit A [Clostridium botulinum B1 str.
           Okra]
          Length = 1279

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 84/224 (37%), Gaps = 35/224 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T  ++        +  V+A AG+GKT +LVQR++  +L    P     LL +T 
Sbjct: 1   MSGTKWTDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+ + I+               K   + P    + K   LL         
Sbjct: 61  TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++       I  +F I DE +   + +EA       +    NE+   
Sbjct: 99  SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENED--- 155

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            F  ++E         L          L+L  F  S  +    +
Sbjct: 156 -FINLVESYASRKDTRL------QEVVLELHRFAKSAPFPYTWL 192


>gi|291518464|emb|CBK73685.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
           16/4]
          Length = 801

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 48/221 (21%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D ++  + E ++ ++      + A AGSGKT +L  RV  L+     P  ++ +T T  
Sbjct: 3   LDFLNDRQREGVVTTE--GPVLILAGAGSGKTRVLTHRVAYLIEQGVMPYNIMAITFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  I+   S                                       G+ V
Sbjct: 61  AAREMRERIDNIVGFGS--------------------------------------DGVWV 82

Query: 134 QTIHAFCEAIMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            T HA C  I+++F        +S+F I D +  K L++E  K     + +D  +  ++ 
Sbjct: 83  ATFHASCVRILRRFCENLGQGYSSNFTIYDTDDCKTLMKEVCK----YLQIDTKQFKERT 138

Query: 192 FYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWR 230
           F  ++  + ++    E   +  + +    +    +  Y  R
Sbjct: 139 FLNVISDAKNKLIGPEEFTNRAMGDFNMSRQATVYREYQAR 179


>gi|300774389|ref|ZP_07084253.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300507033|gb|EFK38167.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 1046

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 18/183 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            ++A+AGSGKT+ LVQR+L + L           +L LT T  AA EM  R+L  +  +S
Sbjct: 7   VINASAGSGKTYALVQRLLMICLRYPNQQQSIRNILALTFTNKAANEMKERILSWLGNFS 66

Query: 91  HLSDEILSAEITKI------QGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAI 143
              D   +A++  I      QG K    D+  +++ LL  +L     L + TI  F   +
Sbjct: 67  -AKDYAENADLKNIQKAFEEQGLKITIDDLHQRSKKLLDYVLHNYSTLNIGTIDRFNSRL 125

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--ND 201
           ++ F  E  +  +F +  E +++  + EA    L  I    NE +  +F + ++ S  N+
Sbjct: 126 VRSFSYELGLAKNFNL--EIEAEPFLIEAVDKMLDQI--GENETISNSFMDYVDYSLENN 181

Query: 202 EDI 204
           E I
Sbjct: 182 ERI 184


>gi|319778234|ref|YP_004129147.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis
           MCE9]
 gi|317108258|gb|ADU91004.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis
           MCE9]
          Length = 735

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            S  +D ++  K +    +   +   V A AGSGKT +L  R+  L+    A P  +L +
Sbjct: 2   MSSVLDSLN--KQQLAAVTSEAKHLLVLAGAGSGKTKVLTTRIAWLVQQGIATPERILAV 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+ + I                                         P
Sbjct: 60  TFTNKAAKEMMERIGKYIPV--------------------------------------NP 81

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             L V T H+ C  I++    E  + + F I D    K +++   KS 
Sbjct: 82  KSLWVGTFHSICHRILRAHHKEVGLPAAFQILDMADQKSMLKRILKSM 129


>gi|168211266|ref|ZP_02636891.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710740|gb|EDT22922.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str.
           ATCC 3626]
          Length = 751

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1   MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 61  KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +  F I D    K LI+   K  
Sbjct: 83  ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126


>gi|110803328|ref|YP_699522.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101]
 gi|110683829|gb|ABG87199.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101]
          Length = 751

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1   MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 61  KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +  F I D    K LI+   K  
Sbjct: 83  ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126


>gi|331006665|ref|ZP_08329945.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC1989]
 gi|330419518|gb|EGG93904.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC1989]
          Length = 745

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 36/196 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + E + A  P  +  + A AGSGKT +LV R+  L+ + +  P +++ 
Sbjct: 2   DVSYLLDDLNDAQREAVSA--PACNQLILAGAGSGKTRVLVHRIAWLIQVEHVSPHSIMS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ +++                                 L   ++  
Sbjct: 60  VTFTNKAAREMRGRLEDLLDGNL-----------------------------LDSNLVGN 90

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + V T H     +++      N+  +F I D +   +L     K    ++ LD  + 
Sbjct: 91  SRSMWVGTFHGIAHRLLKAHWKILNLPQNFQILDSDDQLRL----VKRVCQTLKLDETKW 146

Query: 188 LKKAFYEILEISNDED 203
             +     +    DE 
Sbjct: 147 PPRQAQSYINSQKDEG 162


>gi|320009010|gb|ADW03860.1| ATP-dependent DNA helicase PcrA [Streptomyces flavogriseus ATCC
           33331]
          Length = 812

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           + +  +D ++    ++           + A AGSGKT +L  R+  LL     HP  +L 
Sbjct: 62  DSAALLDGLN--TEQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGVHPGQILA 119

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++   +                                     
Sbjct: 120 ITFTNKAAGEMKERVEDLVGPRA------------------------------------- 142

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + V T H+ C  I+++       TS F+I D   SK+L+    +  
Sbjct: 143 -NAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 190


>gi|255534428|ref|YP_003094799.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10]
 gi|255340624|gb|ACU06737.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10]
          Length = 1064

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 14/179 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----PSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            ++A+AGSGKT+ LVQ +L + L +         +L LT T  AA EM  R+++ +  +S
Sbjct: 18  VINASAGSGKTYALVQNLLVICLKHPSQPDKIRNILALTFTNKAANEMKQRIIKWLREFS 77

Query: 91  HLS-----DEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIM 144
                   D     +  K+QG + +   +  ++R +L  +L     L + TI  F   ++
Sbjct: 78  SAEYANNQDLKNIQQKMKVQGIELSLETLHKRSRKILDYVLHNYSTLNIGTIDKFNSRLV 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + F  E  +  +F +  E  ++  + EA +  LA I  +N+  +  AF + +  S D +
Sbjct: 138 RSFSYELGLAQNFNL--EINAEPYLVEAVEKMLADIGAEND--VSDAFMDFVNYSLDNN 192


>gi|299066163|emb|CBJ37346.1| DNA helicase II [Ralstonia solanacearum CMR15]
          Length = 794

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L++    EQ  A   P  SA + A AGSGKT +L  R+  L+ +    PS +L +T T 
Sbjct: 3   ELLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ R+  ++                                           G+ 
Sbjct: 63  KAAKEMNARLSAMLPI--------------------------------------NTRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D +        A K  L S+ +D+ +   K+ 
Sbjct: 85  IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKSV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     +I +  +R    L   + +   R  +++
Sbjct: 141 QYFINGAKEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVD 185


>gi|307730434|ref|YP_003907658.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307584969|gb|ADN58367.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 787

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMSRLSALLPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A + + F I D          A K  +  + +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185


>gi|168216776|ref|ZP_02642401.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239]
 gi|182381218|gb|EDT78697.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239]
          Length = 751

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1   MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 61  KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +  F I D    K LI+   K  
Sbjct: 83  ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126


>gi|32473647|ref|NP_866641.1| helicase [Rhodopirellula baltica SH 1]
 gi|32444183|emb|CAD74180.1| probable helicase [Rhodopirellula baltica SH 1]
          Length = 924

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 8/206 (3%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
              + +D + ++ +    A +PT    V A+AG+GKT+ L  R+L++LL  A P T+L  
Sbjct: 39  SLPDELDFVVESPTTLREAFEPT---LVRASAGTGKTYQLTARLLKILLTGAPPETILAT 95

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AA E+  RVL  +   +    E    E+ +  G +     +     L   +L   
Sbjct: 96  TFTRKAAGEILERVLITLGKAAIDPSENAITELRQQVGIEGLPRHVCGQ--LFHRLLRNI 153

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             L++ T+ +    + +  P E ++   + + DE +   L + A  + + S+      E 
Sbjct: 154 HRLRICTLDSLFSQLARALPFELDLPPGWRLTDEVEEIWLRQVAIGNLIESL---QPAET 210

Query: 189 KKAFYEILEISNDEDIETLISDIISN 214
           +     +       +I   + D++ N
Sbjct: 211 ETLISMLSRGDVKRNIARELIDVVEN 236


>gi|323704721|ref|ZP_08116299.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536183|gb|EGB25956.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1073

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 24/169 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAA 76
               EQ  A D  ++  + A AGSGKT +L +R ++LL  + +     ++ +T T+ AAA
Sbjct: 10  DLSQEQSRALDIGKNVALKAGAGSGKTRVLTKRYIKLLNDVTDIKIDNIVAITFTRKAAA 69

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ + I +                           K         ++     + TI
Sbjct: 70  EMKERIRKEIESLCKSD----------------------KDGKKWTVFRDSLIFANIDTI 107

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           H FCE +++   +E ++   F+I DE +    +++  +     ++ D  
Sbjct: 108 HGFCEKMIRDNFVETSVDPTFSIMDEAEVSTAVKKMVEIVTGEVINDEK 156


>gi|238897902|ref|YP_002923581.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465659|gb|ACQ67433.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 731

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           ++S+ I+ +++   ++   +       V A AGSGKT +LV R+  LL + +  P ++L 
Sbjct: 2   DYSKLINTLNEK--QRTAVTSSADHILVLAGAGSGKTRVLVHRIAWLLSVEHVSPYSILS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HRV  ++ +                                       
Sbjct: 60  VTFTNKAAAEMRHRVSALMGSMQ------------------------------------- 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+   T H     +++   LEAN+   F I D +   +L+++  KS    + LD    
Sbjct: 83  -DGMWTGTFHGLAHRLLRMHYLEANLPKDFQIIDNDDQLRLLKKIIKS----LNLDEKRW 137

Query: 188 LKKAFYEILEISNDED 203
             +     +    D+ 
Sbjct: 138 APRQAMWYINHKKDQG 153


>gi|226323304|ref|ZP_03798822.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758]
 gi|225208494|gb|EEG90848.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758]
          Length = 347

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 43/184 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 8   NDRQQEAVFYTEGPLLILAGAGSGKTRVLTHRIAWLIDQIGVNPWNILAITFTNKAAGEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   S                                        + V T H+
Sbjct: 68  RERVDQIVGFGSE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I++++       ++F I D +  K LI++  K     + +D     +++    +  
Sbjct: 90  MCVRILRRYIDRLGYDTNFTIYDADDQKTLIKDVCK----YLQIDTKMFKERSLLSAISS 145

Query: 199 SNDE 202
           + DE
Sbjct: 146 AKDE 149


>gi|110800092|ref|YP_696932.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC
           13124]
 gi|110674739|gb|ABG83726.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC
           13124]
          Length = 751

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++  +  P  +L +T T 
Sbjct: 1   MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 61  KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +  F I D    K LI+   K  
Sbjct: 83  ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126


>gi|311696294|gb|ADP99167.1| UvrD/REP helicase [marine bacterium HP15]
          Length = 721

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ID ++  + E + A        V A AGSGKT +LV R+  L+ +    P+ +L 
Sbjct: 2   DVSHIIDPLNDAQREAVTAQ--NDHLLVLAGAGSGKTRVLVHRIAWLMTVDRVPPTGILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM +R+ +++   +                                     
Sbjct: 60  VTFTNKAAKEMRYRIEQMMDIPAR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             GL   T H     +++    +A +  +F + D +   +LI+   +       +D ++ 
Sbjct: 84  --GLWFGTFHGIAHRLLRSHWKDAGLPENFQVLDSDDQLRLIKRVMREN----QIDESKW 137

Query: 188 LKKAFYEILEISNDEDIE 205
             K     +    DE + 
Sbjct: 138 PPKQAQWFISSQKDEGLR 155


>gi|323526768|ref|YP_004228921.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323383770|gb|ADX55861.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 787

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMSRLSALLPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A + + F I D          A K  +  + +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185


>gi|218510905|ref|ZP_03508783.1| UvrD/REP helicase [Rhizobium etli Brasil 5]
          Length = 318

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 7/169 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +    + +   S   RS  V A AGSGKT ++  R+  +L     P  +  +T T+ AA+
Sbjct: 8   LKDDGARRNAISGHDRSILVEAGAGSGKTAVMAGRIAVMLAQGVAPRAIAAVTFTELAAS 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV + +T  +       +  I                R  L+        +   TI
Sbjct: 68  ELLSRVRDFVTDLA-------AGHIAPELRVGLPDGLSQAQRDNLVVASAAIDEITCSTI 120

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           H FC+ +++ +P EA+I     + D  QS  +  E     L   +  + 
Sbjct: 121 HGFCQRLIKPYPAEADIDPGATVMDRNQSDLIFLEIVDDWLRERLSGDQ 169


>gi|91784462|ref|YP_559668.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400]
 gi|91688416|gb|ABE31616.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400]
          Length = 783

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMSRLSALLPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A + + F I D          A K  +  + +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185


>gi|126662607|ref|ZP_01733606.1| ATP-dependent helicase [Flavobacteria bacterium BAL38]
 gi|126625986|gb|EAZ96675.1| ATP-dependent helicase [Flavobacteria bacterium BAL38]
          Length = 1062

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 10/172 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           A+AGSGKT+ L +  L++L     +     +L +T T  A  EM  R++  +  +S  S 
Sbjct: 11  ASAGSGKTYTLTKEYLKILFLASNDDAYRKILAITFTNKAVEEMKSRIVSSLYEFSIDST 70

Query: 95  EILSAEITK---IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
              + E+ K    + K    +   K++ ++  I+       + TI  F   +++ F  + 
Sbjct: 71  SDKAMELLKDVSAETKLSIATLKDKSKAIIKNIIHNYAAFDISTIDKFTHKVIRTFAQDL 130

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           N+  +F ++ E  S  L++EA    ++    D N  L K   E  +   D+D
Sbjct: 131 NLPPNFEVSLETDS--LLQEAIDLVISKAGDDVN--LTKLLIEFSKEKTDDD 178


>gi|187924773|ref|YP_001896415.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187715967|gb|ACD17191.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 783

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMSRLSALLPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A + + F I D          A K  +  + +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185


>gi|326336039|ref|ZP_08202215.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691836|gb|EGD33799.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 1066

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 27/222 (12%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  LV+  LRL+LA  +     +LL +T T  A  EM  RV+  +  +S   
Sbjct: 10  NASAGSGKTFTLVKSFLRLILATKNVEAYKSLLAITFTNKAVNEMKERVINKLLLFSTSD 69

Query: 94  DEILSAEIT----------KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            EI   +              +     +    +++ +L  IL    G  + TI  F + +
Sbjct: 70  QEIQEEDKKPSKDPMFRQLAREIGLTFEQLRERSKKVLNYILHNYAGFTIVTIDGFNQRL 129

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI----LEIS 199
           ++ F  +  +  +F +  E     L+  A ++ L     + N++L K   E     +E  
Sbjct: 130 IRSFAFDLKLNPNFEVFLETD--DLLRLAIENLLKK--TEENKKLTKFLLEFSKDKIEED 185

Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
              DIE  + +I       +L+     Y + +++ +K L   
Sbjct: 186 KSWDIEEELFEIA------RLLTNENHYPYVQELKDKELEDF 221


>gi|312866102|ref|ZP_07726323.1| UvrD/REP helicase [Streptococcus downei F0415]
 gi|311098506|gb|EFQ56729.1| UvrD/REP helicase [Streptococcus downei F0415]
          Length = 451

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 31/234 (13%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           E ++  + + +T  +         +  VSA+AGSGKT ++V+R+L  L      + L   
Sbjct: 21  ELAKEQERLPRTPEQIQAIYSNGTNILVSASAGSGKTFVMVERILDRLKRGDSINQLFIS 80

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA E+  R+ + +T                   +    SD++  +HL    L   
Sbjct: 81  TFTVKAAGELKERLEKKLTQ------------------EIAATSDLTLKQHL-SEQLANL 121

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLD-NNE 186
               + T+ AF + ++  +     I+ +F I  D+ +   L +E      AS M     +
Sbjct: 122 ATADIGTMDAFSQKLVNTYGYSLGISPNFRILQDQSEQASLKKEVYDDLFASYMAGTEGQ 181

Query: 187 ELKKAFYEILEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
             ++     +    D +   +L+  I           F  S    +  +E  L 
Sbjct: 182 TFRRLVRNFIGRGKDSKGFRSLVDSI---------YQFSQSTANPKNWLEDVLL 226


>gi|251782155|ref|YP_002996457.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390784|dbj|BAH81243.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1210

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 27/224 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  +L       L   T T  AA E+ 
Sbjct: 30  TPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELR 89

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + + A    + + L                    +  L   L+      + T+ AF
Sbjct: 90  ERIEKKLYAEIAKTSDSL-------------------LKAYLTDQLQALSQADIGTMDAF 130

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     I+  F I  D+ +   L  +         M  ++  L KA  +    
Sbjct: 131 AQKVLIRYGYSIGISPQFRIMQDKAEQDILKRDVFSKLFEEFMTQDDPSLFKALVK--NF 188

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           S +    +   +++          F  S    ++ +E++    A
Sbjct: 189 SGNRKDASSFREVV-----YSCYAFSQSTENPKQWLEETFLKAA 227


>gi|225376675|ref|ZP_03753896.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM
           16841]
 gi|225211558|gb|EEG93912.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM
           16841]
          Length = 760

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 43/221 (19%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +Q  A         + A AGSGKT +L  R   L+     +P  ++ +T T  AA E
Sbjct: 11  LNEQQREAVFHTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYNIMAITFTNKAAGE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +++   S                                        + V T H
Sbjct: 71  MRERIDQLVGYGSE--------------------------------------SIWVSTFH 92

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           + C  I+++        ++F I D +  K L+++  K       +     L  A  +  +
Sbjct: 93  STCVRILRRHIDRIGFDTNFTIYDSDDQKTLMKDICKRLNVDTKIYKERSLLAAISKAKD 152

Query: 198 ISNDEDIETLISDI---ISNRTALKLIFFFFSYLWRRKIIE 235
              D    +L +      + R   ++   +   L R   ++
Sbjct: 153 ELVDPQEFSLRAAASGDFAKRKQAEIYREYQDALRRNNALD 193


>gi|220927829|ref|YP_002504738.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10]
 gi|219998157|gb|ACL74758.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10]
          Length = 785

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 71/201 (35%), Gaps = 52/201 (25%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL++    EQ  A         + A AGSGKT +L  R+  L+     +PS +L +T T
Sbjct: 1   MDLLNGLNKEQKEAVLHNEGPLLILAGAGSGKTRVLTHRIAYLIEQHGIYPSNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +I   S                                        +
Sbjct: 61  NKAAREMKERIAGLIGDLS--------------------------------------NDM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS------------TLAS 179
            V T H+ C  I+++   +      F I D +  + +I+E  K              L +
Sbjct: 83  WVGTFHSICIRILRRDIEKLGYDRSFVIYDTQDQQVVIKECIKELSINEKNFPPKSVLET 142

Query: 180 IMLDNNEELKKAFYEILEISN 200
           I    +E +    YE L  S+
Sbjct: 143 IGKQKDELIDAVHYEKLYASD 163


>gi|315022895|gb|EFT35919.1| ATP-dependent DNA helicase UvrD/PcrA [Riemerella anatipestifer
           RA-YM]
 gi|325336848|gb|ADZ13122.1| Superfamily I DNA and RNA helicase [Riemerella anatipestifer RA-GD]
          Length = 779

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            +D +      Q  A         V A AGSGKT +L  R+  L+     P  +L LT T
Sbjct: 1   MVDYLKGLNEAQYKAVTTIQGPLMVLAGAGSGKTRVLTMRIAHLITNGVDPFNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++      S                                     L
Sbjct: 61  NKAAREMKERIAKVVGESDAKS-------------------------------------L 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D + +  ++++  K  
Sbjct: 84  WMGTFHSVFARILRSEAHYLGFPSNFTIYDSQDALNVLKKVIKDL 128


>gi|257066035|ref|YP_003152291.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
 gi|256797915|gb|ACV28570.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
          Length = 1121

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 83/223 (37%), Gaps = 32/223 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +  +K ++       ++  VSA AGSGKT +LV R++RLL+ +     + + +T T  A+
Sbjct: 4   MEFSKDQKAAIETRGKNIIVSAAAGSGKTSVLVTRIIRLLIEDRKDIGSFIIVTFTNKAS 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +          L                       +   L+     +++T
Sbjct: 64  VEMKDRIRTALEEELKKKGSDL---------------------KFIKDQLKNLKHAQIKT 102

Query: 136 IHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           +H+FC  ++++ F    +++ +F +  E  +  L   A            +   +   + 
Sbjct: 103 LHSFCADMLRENFYYFDDLSPNFKVISENTATILKSNAIDEVFDKRYEQMDPAFENFLHN 162

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                +D   + +I         LK      + +     ++++
Sbjct: 163 FATNKSDSGAKDII---------LKTYEKIMAEVRPIAWLDQA 196


>gi|159030780|emb|CAO88458.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 773

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 19/170 (11%)

Query: 13  TIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           T D + Q    Q +A +       V A AGSGKT  L  R+  L+      P  +L +T 
Sbjct: 4   TADYLEQLNPSQRIAVEHFCGPLLVVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-G 129
           T  AA EM  R+ +         +     E+ +            + + L   +      
Sbjct: 64  TNKAAREMKTRIEKTFAQQKAQENYGQRLELLEEY----------EQKKLFSQVYRNYTK 113

Query: 130 GLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAK 173
            L + T H+ C  I++    ++  E   +   +F+I DE  ++ L++   
Sbjct: 114 KLWIGTFHSLCGRILRYDINKYQDEYGHSWQRNFSIMDESDAQSLVKNIV 163


>gi|153809769|ref|ZP_01962437.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174]
 gi|149833947|gb|EDM89027.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174]
          Length = 744

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 45/189 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 6   DTLNDRQKEAVLHTD--GPLLILAGAGSGKTRVLTHRIAYLIAEKGVNPWNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +I  +                                        G + V
Sbjct: 64  AAHEMRERVDKIAGSEG--------------------------------------GSVWV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++        ++F I D +  K LI+E  +     + +D  +  ++A  
Sbjct: 86  STFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLIKEICR----KMNIDTKKVKERALL 141

Query: 194 EILEISNDE 202
             +  + DE
Sbjct: 142 AQISHAKDE 150


>gi|83643631|ref|YP_432066.1| DNA-dependent helicase II [Hahella chejuensis KCTC 2396]
 gi|83631674|gb|ABC27641.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 721

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 45/194 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D ++  + E + AS   R+  V A AGSGKT +LV R+  L+ +       ++ +T T
Sbjct: 6   VLDPLNDAQREAVTAS--ARNLLVLAGAGSGKTRVLVHRMAWLIQVERIGAHAIMAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   +                                       G+
Sbjct: 64  NKAAREMRERVESLLHIPTR--------------------------------------GM 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+    +++    EA +  +F + D +  ++++    K  +  + LD ++   + 
Sbjct: 86  WLGTFHSLAHRLLRAHWREAGLPENFQVIDSDDQQRML----KRVIRELGLDESKWPARQ 141

Query: 192 FYEILEISNDEDIE 205
               +    DE + 
Sbjct: 142 AQYFINSQKDEGLR 155


>gi|72162979|ref|YP_290636.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX]
 gi|71916711|gb|AAZ56613.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX]
          Length = 754

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 40/225 (17%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + ++ +++   ++           + A AGSGKT +L  R+  LL      PS +L +T 
Sbjct: 6   QLLEGLNEL--QRAAVLHHGSPLLIIAGAGSGKTRVLTHRIAYLLAERGVRPSEVLAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV  ++                                        T   
Sbjct: 64  TNKAAAEMKERVERLLGE-------------------------------------RTASA 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++        S F I D   S++L++   +           +    
Sbjct: 87  MWVMTFHSACVRILRREAARLGYPSSFTIYDSADSQRLMQLVCRELDLDPKRFPPKSFSA 146

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
               +     D D     ++ +  R   +    +   L+    ++
Sbjct: 147 QVSSLKNELVDYDTFAGRAETVQERALAEAYQLYQQRLYEAGAMD 191


>gi|313205710|ref|YP_004044887.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868]
 gi|312445026|gb|ADQ81381.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868]
          Length = 779

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            +D +      Q  A         V A AGSGKT +L  R+  L+     P  +L LT T
Sbjct: 1   MVDYLKGLNEAQYKAVTTIQGPLMVLAGAGSGKTRVLTMRIAHLITNGVDPFNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++      S                                     L
Sbjct: 61  NKAAREMKERIAKVVGESDAKS-------------------------------------L 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D + +  ++++  K  
Sbjct: 84  WMGTFHSVFARILRSEAHYLGFPSNFTIYDSQDALNVLKKVIKDL 128


>gi|256371278|ref|YP_003109102.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007862|gb|ACU53429.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 715

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 40/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E ++ ++ ++ E + A  P     V A AGSGKT +L +RV  LL A   PS++L +T T
Sbjct: 4   ELLEDLNPSQREAVSA--PIGPVLVLAGAGSGKTRVLTRRVAWLLAAGERPSSILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM+ RV  ++                                           GL
Sbjct: 62  NKAAGEMAERVRSLVGP--------------------------------------NADGL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  +++  P    + S ++I D++ +++L+E   +  
Sbjct: 84  WVSTFHAACARMLRLHPELGGLRSGWSIYDQDDARRLLERTIRRL 128


>gi|326334139|ref|ZP_08200365.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1]
 gi|325948064|gb|EGD40178.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1]
          Length = 819

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 50/233 (21%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D +++   ++           V A AGSGKT +L +R+  L+    AHP ++L +T 
Sbjct: 38  ELLDGLNE--PQKAAVQHQGAPLLVVAGAGSGKTRVLTRRIAWLISQRGAHPGSILAITF 95

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV  ++   + +                                      
Sbjct: 96  TNKAAAEMKQRVEALVGKRARI-------------------------------------- 117

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELK 189
           + V T H+ C  I+++   +  + S+F+I D +  K+L++      L+ + LD    +  
Sbjct: 118 MWVSTFHSACVRILRKEIDKVGLKSNFSIYDAQDQKRLMQL----VLSDLDLDPRHYQPG 173

Query: 190 KAFYEILEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +    + +  N+  D+E    D    R  L+  +      +++++ + +    
Sbjct: 174 QVLNWVSDQKNELRDVEAAEKDA---RNHLEQTYVAAYKEYQKRLRQANALDF 223


>gi|297516694|ref|ZP_06935080.1| DNA-dependent helicase II [Escherichia coli OP50]
          Length = 695

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 43/172 (25%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A AGSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++       
Sbjct: 1   MVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT----- 55

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                            + GG+ V T H     +++   ++AN+
Sbjct: 56  ---------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANL 82

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
              F I D E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 83  PQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 130


>gi|305681998|ref|ZP_07404802.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658471|gb|EFM47974.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 898

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 43/230 (18%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DLI+    +Q  A + + S   + A AGSGKT +L +R+  LL +    P  +L +T T 
Sbjct: 94  DLIADLNPQQRAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTN 153

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 154 KAAAEMRDRVIDLVGPTAT--------------------------------------RMW 175

Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V T H+ C  I+++       + ++F I D + SK+L+    K    +        L  A
Sbjct: 176 VATFHSACVRILREQAHLLPGLNTNFTIYDADDSKRLLGMIAKDLQINAQKFPPRLLAAA 235

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
              +     D D  +   +  + R             ++R++   +    
Sbjct: 236 ISALKTELTDPDAAS--DEAAATRNPFDRTIAEVYTEYQRRLRAANALDF 283


>gi|222152848|ref|YP_002562025.1| ATP-dependent exonuclease subunit A [Streptococcus uberis 0140J]
 gi|251764571|sp|B9DRV0|ADDA_STRU0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|222113661|emb|CAR41583.1| putative ATP-dependent exonuclease subunit A [Streptococcus uberis
           0140J]
          Length = 1220

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R++  +L       +   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTNGQNILVSASAGSGKTFVMVERIIDKVLRGISIENMFISTFTVKAANELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +     ++D+                    + +  L   ++      + T+ AF
Sbjct: 89  ERLEKKLREGILMTDDP-------------------EMKAYLNDQMQAIALADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ +      I   F I  D+ + + L  E  KS   + M  ++ ++   F  +++ 
Sbjct: 130 TQKLLNEHGYLLGIPPKFRIMQDKSEQELLKNEIYKSLFENYMASDHSQV---FLRLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
            +         D  S R  + K+  F  S    ++ +E +  
Sbjct: 187 FSGNR-----KDSKSFRDQVYKIYQFSQSTENPKQWLENNFL 223


>gi|154249214|ref|YP_001410039.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
 gi|154153150|gb|ABS60382.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
          Length = 1130

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 93/216 (43%), Gaps = 27/216 (12%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPS---TLLCLTHTKAAAAEMSHRV 82
           +P  + ++SA+AG+GKT+ L    + +L       +P     +L +T T  AA EM  R+
Sbjct: 15  NPNCNYFISASAGTGKTYTLTNYYMGILEYYEKENNPDIVDGILAVTFTNKAANEMKERI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           +  +       ++I S+ ++ +   K               +        + TI +FC  
Sbjct: 75  MNKVR------EKITSSSVSNLAYWK--------------RVYSNMSRAVISTIDSFCRR 114

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++ +  + A +  +F I ++ +  K+I+ A +  +  I     E+L+     +L     +
Sbjct: 115 VLIEQNIYAGVDPNFTIINDLKQLKIIDSASRQAM-EIAFKVYEDLEIPLSPMLSSERRK 173

Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            IE  I ++   + ++  +F     +WR K   + +
Sbjct: 174 RIEGYIKELKEIKDSIIDLFELVGDVWRVKGFVEDI 209


>gi|182436526|ref|YP_001824245.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326777148|ref|ZP_08236413.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465042|dbj|BAG19562.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657481|gb|EGE42327.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 813

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 45/205 (21%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAH 61
           +     + +  +D ++    ++           + A AGSGKT +L  R+  LL     H
Sbjct: 56  HPRPAIDSAALLDGLN--TEQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGTH 113

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P  +L +T T  AA EM  RV +++   +                               
Sbjct: 114 PGQILAITFTNKAAGEMKERVEQLVGPRA------------------------------- 142

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                    + V T H+ C  I+++   +   TS F+I D   SK+L+    +     + 
Sbjct: 143 -------NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRD----LD 191

Query: 182 LDNNEELKKAFYEILEISNDEDIET 206
           LD  +   K+F   +    +E I+ 
Sbjct: 192 LDPKQFPPKSFTAKVSNLKNELIDE 216


>gi|229814925|ref|ZP_04445263.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM
           13280]
 gi|229809412|gb|EEP45176.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM
           13280]
          Length = 1179

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 35/171 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68
           +DL +    ++ + +   R  +VSA AGSGKT  L +R+L  L   + P       +L +
Sbjct: 1   MDLSTLMPQQRDIVTTLDRPLFVSAGAGSGKTFTLTRRILWALSPESGPFIRNLDRVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T TK AAAE+  RV   +                                     I    
Sbjct: 61  TFTKDAAAEIRERVRGALIEEGMGD------------------------------IALQV 90

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               + TIH  C  I++   LE  +   F++ DE  S  L++ A  + +A 
Sbjct: 91  DDAWISTIHGMCSRILRAHALELGLDPEFSVLDESVSGPLMDRAVDAVIAR 141


>gi|213961804|ref|ZP_03390070.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno]
 gi|213955593|gb|EEB66909.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno]
          Length = 1060

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 90/182 (49%), Gaps = 13/182 (7%)

Query: 30  PTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEI 85
           P+ +  + +A+AGSGKT+ LV+  L+++L + +P     LL +T T  A  EM +R++E+
Sbjct: 3   PSANYTIYNASAGSGKTYSLVKAYLQIILGSKYPDLFRQLLAITFTNKAVFEMKNRIIEL 62

Query: 86  ITAWSH----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  +S      +   + +E+ K   K P++    ++   L  IL       + TI  F  
Sbjct: 63  LGVFSEDKMLTNPHPMFSELAKDL-KLPDEELRMRSAKTLEHILHNYAAFNISTIDGFNH 121

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  + ++   F +  +  SK L+E A  + ++     N+ EL +   +      D
Sbjct: 122 QLIRRFSHDLHLNPFFEV--QLDSKALLERAVDNLMSKA--GNDTELTQLLIDFANEKID 177

Query: 202 ED 203
           +D
Sbjct: 178 DD 179


>gi|269838114|ref|YP_003320342.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
 gi|269787377|gb|ACZ39520.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
          Length = 1125

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 21/205 (10%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
              + + + +   R+ +V A AG+GKT +LV R++ +L    A    L+ +T T+ AAAE
Sbjct: 7   DQATREAIRTALDRNFFVEAGAGTGKTTVLVDRIVAILRNGHATVDELVVITFTRLAAAE 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ RV E +      ++        +                            +++TIH
Sbjct: 67  LATRVRERLEETRDTTESEEERARLEEALY-------------------ALPRARIETIH 107

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AF   ++++ P+EA +   F   D+  +    +EA +  LA+++   + E  +A +  L 
Sbjct: 108 AFAAGLLRERPVEAGLDPGFEEMDDLSASLAFDEAYQDWLATLLNPEDGERPEAVWRALN 167

Query: 198 ISND-EDIETLISDIISNRTALKLI 221
              D   +  ++  +  +R+ L L+
Sbjct: 168 RGLDLRHLREVVEQVHHHRSLLPLV 192


>gi|107022515|ref|YP_620842.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054]
 gi|105892704|gb|ABF75869.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia AU 1054]
          Length = 846

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 62  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 121

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 122 KAAREMMARLSAMMPIDTR--------------------------------------GMW 143

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 144 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 199

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 200 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 244


>gi|289625507|ref|ZP_06458461.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649762|ref|ZP_06481105.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330870933|gb|EGH05642.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330986942|gb|EGH85045.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 727

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|257485680|ref|ZP_05639721.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011968|gb|EGH92024.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 727

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|166033310|ref|ZP_02236139.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC
           27755]
 gi|166027667|gb|EDR46424.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC
           27755]
          Length = 763

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 41/168 (24%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           +++    D ++  + E            + A AGSGKT +L  R+  L+     +P  +L
Sbjct: 9   EKNLNIYDTLNDKQKE--AVFHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIL 66

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AAAEM  RV  ++   S                                    
Sbjct: 67  AITFTNKAAAEMRERVDNLVGFGSE----------------------------------- 91

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               + V T H+ C  I+++        ++F I D +  K L+ +  K
Sbjct: 92  ---SIWVSTFHSMCVRILRRHIALLGYDTNFTIYDTDDQKTLMRDVCK 136


>gi|88705431|ref|ZP_01103142.1| DNA helicase II [Congregibacter litoralis KT71]
 gi|88700521|gb|EAQ97629.1| DNA helicase II [Congregibacter litoralis KT71]
          Length = 717

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +  ++  + + + A   + +  V A AGSGKT +LV R+  L+      P  +L 
Sbjct: 2   DVSDILTGLNDAQRDAVAAE--SGNMLVLAGAGSGKTRVLVHRIAWLIRAEGLSPHAVLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++   +H                                    
Sbjct: 60  VTFTNKAAREMRGRIEHMLQIPTH------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + V T H     +++    EA +  +F I D +   +L++   +     + LD +  
Sbjct: 84  --SMWVGTFHGLAHRLLKTHWKEARLPQNFQILDSDDQLRLVKRVCR----ELQLDESRW 137

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    DE +  
Sbjct: 138 PPKQAQWYINAQKDEGLRA 156


>gi|153930858|ref|YP_001382829.1| recombination helicase AddA [Clostridium botulinum A str. ATCC
           19397]
 gi|153935206|ref|YP_001386396.1| recombination helicase AddA [Clostridium botulinum A str. Hall]
 gi|251764508|sp|A7FPG0|ADDA_CLOB1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|152926902|gb|ABS32402.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC
           19397]
 gi|152931120|gb|ABS36619.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str.
           Hall]
          Length = 1279

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 26/201 (12%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T  ++        +  V+A AG+GKT +LVQR++  +L    P     LL +T 
Sbjct: 1   MSGTKWTDEQRQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKGEPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+ + I+               K   + P    + K   LL         
Sbjct: 61  TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++       I  +F I DE +   + +EA       +    NE+   
Sbjct: 99  SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFIN 158

Query: 191 AFYEILEISNDEDIETLISDI 211
                     D  ++ ++ ++
Sbjct: 159 LVESYAS-RKDTRLQEVVLEL 178


>gi|148378439|ref|YP_001252980.1| recombination helicase AddA [Clostridium botulinum A str. ATCC
           3502]
 gi|251764512|sp|A5HYY0|ADDA_CLOBH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|148287923|emb|CAL81989.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC
           3502]
          Length = 1279

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 26/201 (12%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T  ++        +  V+A AG+GKT +LVQR++  +L    P     LL +T 
Sbjct: 1   MSGTKWTDEQRQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKGEPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+ + I+               K   + P    + K   LL         
Sbjct: 61  TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++       I  +F I DE +   + +EA       +    NE+   
Sbjct: 99  SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFIN 158

Query: 191 AFYEILEISNDEDIETLISDI 211
                     D  ++ ++ ++
Sbjct: 159 LVESYAS-RKDTRLQEVVLEL 178


>gi|228473051|ref|ZP_04057808.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275633|gb|EEK14410.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624]
          Length = 1071

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  LV+  L+L+LA  +     TLL +T T  A  EM  RV+  +  +S   
Sbjct: 8   NASAGSGKTFTLVKSFLKLILATKNVEAYKTLLAITFTNKAVNEMKERVINQLLLFSTPD 67

Query: 94  DEILSAEITK----------IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +   E              +    ++    +++ +L  IL    G  + TI  F + +
Sbjct: 68  TLVEEGEKKASDDIMFVQLAQELLLSHEELQERSQKVLKHILHNYAGFTITTIDGFNQRL 127

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI----LEIS 199
           ++ F  +  +  +F +  E     L+  A ++       + N+ L K   E     +E  
Sbjct: 128 IRSFAFDLKLNPNFEVFLETD--DLLRLAIENLFKKA--NENQLLTKLLLEFSRDKIEED 183

Query: 200 NDEDIETLISDIIS 213
            D DIET + DI  
Sbjct: 184 KDWDIETELFDIAK 197


>gi|330880966|gb|EGH15115.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 727

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|270157203|ref|ZP_06185860.1| DNA helicase II [Legionella longbeachae D-4968]
 gi|289164396|ref|YP_003454534.1| DNA helicase II [Legionella longbeachae NSW150]
 gi|269989228|gb|EEZ95482.1| DNA helicase II [Legionella longbeachae D-4968]
 gi|288857569|emb|CBJ11407.1| DNA helicase II [Legionella longbeachae NSW150]
          Length = 721

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 44/191 (23%)

Query: 17  ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +S+    Q    + P  +  V A AGSGKT +LV R+  L+   N  P  +L +T T  A
Sbjct: 7   LSELNERQHEAVTAPLGNTLVLAGAGSGKTKVLVSRIAWLVAEQNLSPHGILAVTFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  I+                                           GL V 
Sbjct: 67  AGEMRARLNNILNMPVM--------------------------------------GLWVG 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H  C  ++++   EA++   F I D E   ++I    K  +A++ LD  +   K    
Sbjct: 89  TFHGLCHRLLRRHYKEAHLPELFHILDTEDQARMI----KRVIAALNLDPEQWPVKQAQS 144

Query: 195 ILEISNDEDIE 205
            +    DE   
Sbjct: 145 FINGQKDEGTR 155


>gi|330952409|gb|EGH52669.1| DNA-dependent helicase II [Pseudomonas syringae Cit 7]
 gi|330970255|gb|EGH70321.1| DNA-dependent helicase II [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 727

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|282860904|ref|ZP_06269970.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE]
 gi|282564640|gb|EFB70176.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE]
          Length = 815

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           + +  +D ++    ++           + A AGSGKT +L  R+  LL     HP  +L 
Sbjct: 65  DSAALLDGLN--TEQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGVHPGQILA 122

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++   +                                     
Sbjct: 123 ITFTNKAAGEMKERVGDLVGPRA------------------------------------- 145

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + V T H+ C  I+++       TS F+I D   SK+L+    +  
Sbjct: 146 -NAMWVMTFHSACVRILRRESKLLGFTSSFSIYDAADSKRLMALVCRDL 193


>gi|330937394|gb|EGH41379.1| DNA-dependent helicase II [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 727

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|330890591|gb|EGH23252.1| DNA-dependent helicase II [Pseudomonas syringae pv. mori str.
           301020]
          Length = 727

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|288925108|ref|ZP_06419044.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17]
 gi|288338298|gb|EFC76648.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17]
          Length = 819

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 38/180 (21%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            +DL+S+    Q  A +     + V A AGSGKT +L  ++  LL     P  +L LT T
Sbjct: 1   MVDLLSELNDSQREAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLQRGVRPYNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+ +++     L                                      L
Sbjct: 61  NKAAAEMKARIGKLVGERDAL-------------------------------------AL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           ++ T H+    I++         S+F I DE  S+ LI+   K   A     + ++ K A
Sbjct: 84  RMGTFHSVFSRILRVEAAHIGYNSNFTIYDESDSRSLIKTIVKELAAGNEKMDEKQYKPA 143


>gi|33152168|ref|NP_873521.1| DNA-dependent helicase II [Haemophilus ducreyi 35000HP]
 gi|33148390|gb|AAP95910.1| DNA helicase II [Haemophilus ducreyi 35000HP]
          Length = 729

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A  P  +  V A AGSGKT +L  R+  L+ + +   +++L 
Sbjct: 2   DFSLLLDGLNDKQRQAVSA--PLGNYLVLAGAGSGKTRVLTHRIAWLMRVEHISEASILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM +R+   ++  S                                     
Sbjct: 60  VTFTNKAAAEMRNRIEYTLSMSSQ----------------------------------HR 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ V T H+    +++   L+AN+   F I D E  
Sbjct: 86  LFGMWVGTFHSIAHRLLRSHYLDANLPQDFQIMDTEDQ 123


>gi|320321765|gb|EFW77863.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331515|gb|EFW87455.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 727

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|289677452|ref|ZP_06498342.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae FF5]
          Length = 727

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|299143270|ref|ZP_07036350.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298517755|gb|EFI41494.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 1036

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 38/202 (18%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-----LANAHPSTLLCLTHTKAAAAE 77
           + +  +   ++  +SA AG+GKT +L +R L +L             +L +T+T  AA E
Sbjct: 8   QNIAVNTIDKNICLSAGAGTGKTKVLTERFLNILKNGNLTKGYELEEILAITYTNKAAFE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  ++   ++                               + L  I +     ++ TIH
Sbjct: 68  MKSKIKGALSKSKD---------------------------NKLKDIYKFFSNAQIFTIH 100

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AFC  +++++PL   +   F I +  +++ ++ +A  + L     +N+  L +   E+ E
Sbjct: 101 AFCGELIRKYPLAVEVDPEFEICEPLEAEDILRDATNTVLKK--YENDMRLYELLMELSE 158

Query: 198 ISNDEDIETLISDIISNRTALK 219
           I    DI      IIS    LK
Sbjct: 159 I----DIRKFSDAIISLYDDLK 176


>gi|269128418|ref|YP_003301788.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183]
 gi|268313376|gb|ACY99750.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183]
          Length = 768

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++    ++           + A AGSGKT +L  R+  LL   + HP+ +L +T T
Sbjct: 10  LLDGLN--PQQRAAVLHTGGPLLIVAGAGSGKTRVLTHRIAYLLAERDVHPAQILAITFT 67

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   S                                      G +
Sbjct: 68  NKAAGEMRERVQALVGPRS--------------------------------------GAM 89

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++        S+F+I D   +++L+    +  
Sbjct: 90  WVMTFHSACVRILRREARRLGFPSNFSIYDAADAQRLMALVCREL 134


>gi|298489453|ref|ZP_07007464.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156027|gb|EFH97136.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 727

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|66048289|ref|YP_238130.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae B728a]
 gi|63258996|gb|AAY40092.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a]
          Length = 727

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|302336244|ref|YP_003801451.1| UvrD/REP helicase [Olsenella uli DSM 7084]
 gi|301320084|gb|ADK68571.1| UvrD/REP helicase [Olsenella uli DSM 7084]
          Length = 879

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
           T+DL     +++  A        V A AGSGKT +L  R+  ++      P  +L +T T
Sbjct: 35  TVDLSGLNPAQRKAAETTHGPLLVLAGAGSGKTRVLTYRIAHMIADEGVRPWQVLAITFT 94

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  ++   +                                       G+
Sbjct: 95  NKAAAEMRERLGALLPGGTR--------------------------------------GM 116

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  ++++         +F I D++ S++L++      
Sbjct: 117 WVCTFHAMCVRMLREDGELLGYQPNFTIYDDDDSRRLVKSIMADL 161


>gi|255324817|ref|ZP_05365930.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum
           SK141]
 gi|255298117|gb|EET77421.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum
           SK141]
          Length = 841

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 42/175 (24%)

Query: 6   SFQEHSETIDLISQ-TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           +    SE+ D +++    +QL A   + S   + A AGSGKT +L +R+  L+     +P
Sbjct: 30  AASSQSESPDALTEGLNPQQLEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNP 89

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T  AAAEM  RV  ++   +                                
Sbjct: 90  WEILAITFTNKAAAEMKERVGGLVGPVAE------------------------------- 118

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
                   + V T H+ C  I++Q       + ++F I D + +++L+    K  
Sbjct: 119 -------RMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDM 166


>gi|237801766|ref|ZP_04590227.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806704|ref|ZP_04593408.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331024625|gb|EGI04681.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027818|gb|EGI07873.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 727

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|94499918|ref|ZP_01306454.1| DNA helicase II [Oceanobacter sp. RED65]
 gi|94428119|gb|EAT13093.1| DNA helicase II [Oceanobacter sp. RED65]
          Length = 736

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 77/198 (38%), Gaps = 45/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + +E +D ++  + E +    P     V A AGSGKT +LV R+  L+ + +  PS+++ 
Sbjct: 5   DVTELLDGLNPPQREAVA--SPLNHQLVLAGAGSGKTRVLVHRIAWLMQIEHISPSSIMA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV E+                                         +
Sbjct: 63  VTFTNKAAKEMRSRVEELTGI--------------------------------------S 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P  L + T H+    +++    +AN++ +F + D +   +LI+   +     + +D    
Sbjct: 85  PKHLWIGTFHSLAHRLLRTHWKQANLSENFQVMDSDDQLRLIKRIVR----GLNIDEEVY 140

Query: 188 LKKAFYEILEISNDEDIE 205
             K     +    DE + 
Sbjct: 141 QPKQAQWYINAQKDEGLR 158


>gi|239979932|ref|ZP_04702456.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
 gi|291451787|ref|ZP_06591177.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
 gi|291354736|gb|EFE81638.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
          Length = 840

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +  +D ++    ++           + A AGSGKT +L  R+  LL     HP  +L +T
Sbjct: 69  AALLDGLND--EQRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLGERGVHPGQILAIT 126

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV E++   +                                       
Sbjct: 127 FTNKAAGEMKERVEELVGPRA--------------------------------------N 148

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++       TS F+I D   SK+L+    +  
Sbjct: 149 AMWVSTFHSACVRILRRESKHLGFTSSFSIYDAADSKRLMALVCRDL 195


>gi|71734750|ref|YP_277224.1| DNA-dependent helicase II [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555303|gb|AAZ34514.1| DNA helicase II [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 727

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|312795642|ref|YP_004028564.1| DNA helicase II [Burkholderia rhizoxinica HKI 454]
 gi|312167417|emb|CBW74420.1| DNA helicase II (EC 3.6.1.-) [Burkholderia rhizoxinica HKI 454]
          Length = 791

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+ +L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLISRGEASPAGILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                           G+ 
Sbjct: 63  KAAREMLIRLDAMLPI--------------------------------------NTRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  +  + +D+ +   K+ 
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQAFQILDTADQLS----AIKRLMKGLNIDDEKYPPKSL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEQVDASDNFNRKCVELYAAYEQQCQREGVVD 185


>gi|311740890|ref|ZP_07714717.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304410|gb|EFQ80486.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 841

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 42/175 (24%)

Query: 6   SFQEHSETIDLISQ-TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           +    SE+ D +++    +QL A   + S   + A AGSGKT +L +R+  L+     +P
Sbjct: 30  AASPQSESPDALTEGLNPQQLEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNP 89

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T  AAAEM  RV  ++   +                                
Sbjct: 90  WEILAITFTNKAAAEMKERVGGLVGPVAE------------------------------- 118

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
                   + V T H+ C  I++Q       + ++F I D + +++L+    K  
Sbjct: 119 -------RMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDM 166


>gi|300690847|ref|YP_003751842.1| DNA helicase II [Ralstonia solanacearum PSI07]
 gi|299077907|emb|CBJ50546.1| DNA helicase II [Ralstonia solanacearum PSI07]
          Length = 795

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P  SA + A AGSGKT +L  R+  L+ +    PS +L +T T 
Sbjct: 3   DLLAHLNPEQRTAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSGRVSPSGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ R+  ++                                           G+ 
Sbjct: 63  KAAKEMTSRLSAMLPI--------------------------------------NTRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D +        + K  L S+ +D+ +   K  
Sbjct: 85  IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----SIKRLLKSLNVDDEKFPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++       +I +  +R    L   + +   R  +++
Sbjct: 141 QYFINGAKEQGRRAGDLEIANEFDRRMADLYAAYDAQCQREGVVD 185


>gi|323693634|ref|ZP_08107834.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673]
 gi|323502325|gb|EGB18187.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673]
          Length = 813

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 43/184 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT +L  R+  L+     +P  ++ +T T  AAAEM
Sbjct: 8   NPMQQEAVYHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   +                                        + V T H+
Sbjct: 68  RERVDKIVGFGAE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I+++       +++F I D +  + L+++  K     + +D  +  ++A    +  
Sbjct: 90  SCVRILRRHIEYLGYSTNFTIYDGDDQRTLMKQIFKR----LDVDTKQFKERAVLSRISS 145

Query: 199 SNDE 202
           + D+
Sbjct: 146 AKDD 149


>gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 894

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 43/230 (18%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DLI+    +Q  A + + S   + A AGSGKT +L +R+  LL +    P  +L +T T 
Sbjct: 94  DLIADLNPQQRAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTN 153

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 154 KAAAEMRDRVIDLVGPTAT--------------------------------------RMW 175

Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V T H+ C  I+++       + ++F I D + SK+L+    K    +        L  A
Sbjct: 176 VATFHSACVRILREQAHLLPGLNTNFTIYDADDSKRLLGMIAKDLQINAQKFPPRLLAAA 235

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
              +     D D  +   +  + R             ++R++   +    
Sbjct: 236 ISALKTELTDPDAAS--DEAAATRNPFDRTIAEVYTEYQRRLRAANALDF 283


>gi|77920383|ref|YP_358198.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77546466|gb|ABA90028.1| ATP-dependent DNA helicase PcrA [Pelobacter carbinolicus DSM 2380]
          Length = 737

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 46/196 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            S+ +  ++  + + +L  D      + A AGSGKT  L  R+  L+      P  +L +
Sbjct: 1   MSDLLTSLNDCQRQAVLHED--GPLLILAGAGSGKTRTLTHRIAYLIQQQQVEPWQVLAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AAAEM  R+  ++                                          
Sbjct: 59  TFTNKAAAEMRERLQSLVG---------------------------------------NI 79

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
            GL + T HA C  I+++          F I D++  ++LI++     LA + +   +  
Sbjct: 80  DGLWISTFHAACARILRRDGEVLGYGRDFTIYDDQDQQRLIKDC----LAQLRITEKDLK 135

Query: 189 KKAFYEILEISNDEDI 204
            +A    ++ + +  +
Sbjct: 136 PRAVATAIDQAKNRGL 151


>gi|194334487|ref|YP_002016347.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194312305|gb|ACF46700.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 743

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 40/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCL 68
            S+ +  ++  + + +  +  +    V A AGSGKT ++  R+  L+      P  +L L
Sbjct: 1   MSDILQQLNDVQRQAVQTT--SGPVMVLAGAGSGKTRVITYRIAYLIEQERVEPHQILAL 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM HR+           D++L    T+                         
Sbjct: 59  TFTNKAAKEMRHRI-----------DQLLHQGSTR------------------------- 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            GL + T H+    I++ +       S+F+I D + SK L+++  K  
Sbjct: 83  -GLWIGTFHSVFARILRNYIHLIGYNSNFSIYDSDDSKSLVKQVMKEL 129


>gi|329938133|ref|ZP_08287584.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045]
 gi|329302622|gb|EGG46512.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045]
          Length = 901

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 41/171 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65
             + +  +D +++   ++           + A AGSGKT +L  R+  LL   N HP  +
Sbjct: 74  VLDAAALLDGLNEN--QRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQI 131

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  RV +++   +H                                  
Sbjct: 132 LAITFTNKAAGEMKERVEQLVGPRAH---------------------------------- 157

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                + V T H+ C  I+++       TS F+I D   SK+L+    +  
Sbjct: 158 ----AMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 204


>gi|303233093|ref|ZP_07319766.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae
           PB189-T1-4]
 gi|302480678|gb|EFL43765.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae
           PB189-T1-4]
          Length = 873

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           I+L +    ++   +       V A AGSGKT +L  R+  ++      P  +L +T T 
Sbjct: 61  INLSTLNPQQREAVTCTKGPLLVLAGAGSGKTRVLTHRIAYIIQHEQVQPWRILAITFTN 120

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +++                                      ET  G+ 
Sbjct: 121 KAAKEMRERLEMLLS--------------------------------------ETMRGMW 142

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T HA C  I+++       TS+F + D+  SK+L++      
Sbjct: 143 VCTFHAMCSRILREHADVLGYTSNFVVYDDSDSKRLVKTIMDDL 186


>gi|88802036|ref|ZP_01117564.1| ATP-dependent helicase [Polaribacter irgensii 23-P]
 gi|88782694|gb|EAR13871.1| ATP-dependent helicase [Polaribacter irgensii 23-P]
          Length = 1052

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  LV++ L++LL +        +L +T T  AA EM  RVL  +  +S  +
Sbjct: 11  NASAGSGKTFTLVKQYLKVLLTSEDLFMFQKVLAITFTNKAAGEMKERVLSSLEGFSEGN 70

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
              L   I +       ++   +++++L  IL+      + TI +F   I++ F  +  +
Sbjct: 71  TNDLLKMILEETNIN-QRTVQERSKNILDAILKNYAAFSITTIDSFTHKIIKSFAHDLGL 129

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           + +F +  E  +  L+ EA    ++ I            Y + +  +D+  +
Sbjct: 130 SGNFEV--EMDAISLLNEAVDVLVSKIGTHKKLTQLLIDYSLDKADDDKSWD 179


>gi|329920500|ref|ZP_08277232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G]
 gi|328936176|gb|EGG32629.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G]
          Length = 742

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|239943694|ref|ZP_04695631.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239990145|ref|ZP_04710809.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291447158|ref|ZP_06586548.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998]
 gi|291350105|gb|EFE77009.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998]
          Length = 812

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 41/175 (23%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAH 61
           +     + +  +D ++    ++           + A AGSGKT +L  R+  LL     H
Sbjct: 56  HPRPAIDSAALLDGLN--TEQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGTH 113

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P  +L +T T  AA EM  RV +++   +                               
Sbjct: 114 PGQILAITFTNKAAGEMKERVEQLVGPRA------------------------------- 142

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    + V T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 143 -------NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 190


>gi|209965327|ref|YP_002298242.1| UvrD [Rhodospirillum centenum SW]
 gi|209958793|gb|ACI99429.1| UvrD [Rhodospirillum centenum SW]
          Length = 1178

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 47/223 (21%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
              +  ++  + E + A D      V A AG+GKT +L  R+  LL+   A P  +L +T
Sbjct: 36  PAYLAGLNPAQREAVEALD--GPVLVLAGAGTGKTRVLTTRLAHLLVTRRAGPWNILTVT 93

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++   +                                       
Sbjct: 94  FTNKAAREMRERVEALVGVPTE-------------------------------------- 115

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G  + T HA    I+++      +   F I D +   +L+++     + +  +D+ +   
Sbjct: 116 GWWMGTFHALAARILRRHAELVGLKPSFTILDTDDQIRLLKQ----LMEAENIDSKKWPA 171

Query: 190 KAFYEILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWR 230
           +     +E   D+ +  + L  +   +    +LI  +  Y  R
Sbjct: 172 RVLLGAIERWKDKALTPDRLKREDAGDMAGGRLIDLYRQYQDR 214


>gi|307547016|ref|YP_003899495.1| DNA-dependent helicase II [Halomonas elongata DSM 2581]
 gi|307219040|emb|CBV44310.1| DNA-dependent helicase II [Halomonas elongata DSM 2581]
          Length = 762

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 45/194 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D ++  + E + A  P  +  V A AGSGKT +LV R+  L+      P  +L +T T
Sbjct: 35  ILDQMNPAQREAVSA--PQGNMLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYAVLAVTFT 92

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                        +   +
Sbjct: 93  NKAAREMRTRLEALLGI--------------------------------------SLRHV 114

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+    +++    +A +  HF I D +   +LI    K  L    +D+     + 
Sbjct: 115 WVGTFHSIAHRLLRTHWQDARLPQHFQIIDSDDQLRLI----KRLLKDYNIDDERYPPRQ 170

Query: 192 FYEILEISNDEDIE 205
               +    +E + 
Sbjct: 171 VQSFISGCKEEGLR 184


>gi|322417761|ref|YP_004196984.1| UvrD/REP helicase [Geobacter sp. M18]
 gi|320124148|gb|ADW11708.1| UvrD/REP helicase [Geobacter sp. M18]
          Length = 730

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 44/190 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++           V A AGSGKT ++V R+  L+      P  +L +T T  A
Sbjct: 4   LHNLNPPQKEAVLHGEGPLLVLAGAGSGKTRVIVHRIAYLIHELGVPPWQILAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++                                              + 
Sbjct: 64  AGEMRERVRHMLGEGETPL---------------------------------------IS 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I++         S+FAI D++  ++L++E      A + LD      K    
Sbjct: 85  TFHSTCARILRSDIKSLGYDSNFAIYDDKDCERLLKECV----AEMNLDEKRYPVKLLGS 140

Query: 195 ILEISNDEDI 204
            ++   ++ +
Sbjct: 141 AIDEFKNQGM 150


>gi|259501107|ref|ZP_05744009.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335]
 gi|315653835|ref|ZP_07906751.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195]
 gi|259167801|gb|EEW52296.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335]
 gi|315488531|gb|EFU78177.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195]
          Length = 744

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 9   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 69  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 91  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 146

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 147 AISNAKNDLLD 157


>gi|167627248|ref|YP_001677748.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597249|gb|ABZ87247.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 742

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 44/193 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D +S    +Q  A+    R++ + A AGSGKT +L  R+  L          +L +T T 
Sbjct: 5   DFLSGLNPQQKKATLLEDRNSLILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+ HRV +++   +                                       G+ 
Sbjct: 65  KAAKEIQHRVEKMLGISTF--------------------------------------GMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H     ++++   E  +  +F I D+++  +LI    K  + S+ LD+ +   K  
Sbjct: 87  IGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLI----KKVIKSLDLDDKKYPPKLL 142

Query: 193 YEILEISNDEDIE 205
              +    D+ + 
Sbjct: 143 QNFINKQKDKAVR 155


>gi|256545197|ref|ZP_05472563.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170]
 gi|256399238|gb|EEU12849.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170]
          Length = 729

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +DL +    ++           V A AGSGKT +L   +  L+   N +P  +L +T T 
Sbjct: 1   MDLSNLNDKQKEAVLHDKGPLLVVAGAGSGKTRVLTTSIAYLIKEKNVNPVNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++                                       E    L 
Sbjct: 61  KAANEMKERISDLLD--------------------------------------EDVSHLW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I++    +    ++F I D    K L++E     
Sbjct: 83  IGTFHSICARILRMNINKIGYDNNFTIYDTNDQKTLVKEIINDL 126


>gi|330961415|gb|EGH61675.1| DNA-dependent helicase II [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 727

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+ V T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|325911371|ref|ZP_08173783.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D]
 gi|325476721|gb|EGC79875.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D]
          Length = 742

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|302190445|ref|ZP_07266699.1| superfamily I DNA/RNA helicase [Lactobacillus iners AB-1]
          Length = 742

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|303240584|ref|ZP_07327099.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2]
 gi|302591821|gb|EFL61554.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2]
          Length = 739

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL++   +EQ  A         + A AGSGKT +L  R+  L+     +PS++L +T T
Sbjct: 1   MDLLNGLNNEQREAVLHVDGPLLILAGAGSGKTRVLTNRIAYLIKEKGVYPSSILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++   S                                        +
Sbjct: 61  NKAAKEMRERIDKLVENVS--------------------------------------DSM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+ C  I+++   + +    FAI D        +   K  L  + L+      K+
Sbjct: 83  WVSTFHSLCVRILRKDIEKLDYDRSFAIFDYTDQ----QTVVKDCLKELNLNEKNYPPKS 138

Query: 192 FYEILEISNDEDIE 205
             E++  + DE I+
Sbjct: 139 MLEMIGRAKDELID 152


>gi|325913324|ref|ZP_08175692.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B]
 gi|325477427|gb|EGC80571.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B]
          Length = 742

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|327540076|gb|EGF26671.1| ATP-dependent DNA helicase, UvrD/REP family [Rhodopirellula baltica
           WH47]
          Length = 621

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 26/255 (10%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
              + +D + ++ +    A +PT    V A+AG+GKT+ L  R+L++LL  A P T+L  
Sbjct: 39  SLPDELDFVVESPTTLREAFEPT---LVRASAGTGKTYQLTARLLKILLTGAPPETILAT 95

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AA E+  RVL  +   +    E    E+ +  G +     +     L   +L   
Sbjct: 96  TFTRKAAGEILERVLITLGKAAIDPSEKAITELRQQVGIEGLPRHVCGQ--LFHRLLRNI 153

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             L++ T+ +    + +  P E ++   + + DE +   L + A  + + S+     E L
Sbjct: 154 HRLRICTLDSLFSQLARALPFELDLPPGWRLTDEVEEIWLRQVAIGNLIESLQPAETETL 213

Query: 189 KKAF--------------------YEILEISNDEDIETL-ISDIISNRTALKLIFFFFSY 227
                                   Y +   ++ E  + L + ++  +    +      S 
Sbjct: 214 ISMLSRGDVKRNIARELIDVVENTYNLARQADVERWDQLKVPELPESADITRTSGMLRSA 273

Query: 228 LWRRKIIEKSLWSIA 242
              +K + K+L S A
Sbjct: 274 DVPQKSLVKALESAA 288


>gi|160872129|ref|ZP_02062261.1| DNA helicase II [Rickettsiella grylli]
 gi|159120928|gb|EDP46266.1| DNA helicase II [Rickettsiella grylli]
          Length = 722

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L S  +++Q + +       V A AGSGKT +LV R+  L+ +       +L +T T  A
Sbjct: 9   LESLNEAQQQVVAARQTHLLVLAGAGSGKTRVLVHRMAWLIHVEGISLHHILAVTFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++                                            + V 
Sbjct: 69  AGEMRQRLENLLDIPMKT--------------------------------------MWVG 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     +++Q    + +   F I D +   ++I    K  L S+ LD  +   K    
Sbjct: 91  TFHGLAHRLLRQHWEASGLPQSFQIIDSDDQYRMI----KRILLSLNLDEAQWAPKKVQW 146

Query: 195 ILEISNDEDIE 205
            +    DE I 
Sbjct: 147 FINQQKDEGIR 157


>gi|309804689|ref|ZP_07698754.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           09V1-c]
 gi|309809370|ref|ZP_07703232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312873367|ref|ZP_07733418.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d]
 gi|308166081|gb|EFO68299.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           09V1-c]
 gi|308170281|gb|EFO72312.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311091051|gb|EFQ49444.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d]
          Length = 742

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|189346089|ref|YP_001942618.1| UvrD/REP helicase [Chlorobium limicola DSM 245]
 gi|189340236|gb|ACD89639.1| UvrD/REP helicase [Chlorobium limicola DSM 245]
          Length = 741

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 39/164 (23%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D +      Q  A +       V A AGSGKT ++  R+  L+      P  +L LT T 
Sbjct: 3   DFLRDLNDVQRSAVTATEGPVMVLAGAGSGKTRVITYRIAHLIRNNGVTPYNILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HR+ +++ + S                                       GL 
Sbjct: 63  KAAGEMRHRIDKLLQSGS-------------------------------------ASGLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    +++ +        +F+I D + SK LI ++    
Sbjct: 86  IGTFHSVFARLLRSYIHLIGYDRNFSIFDSDDSKSLIRQSMNEL 129


>gi|312870767|ref|ZP_07730873.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a]
 gi|311093643|gb|EFQ51981.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a]
          Length = 742

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|309808887|ref|ZP_07702768.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           01V1-a]
 gi|308167885|gb|EFO70022.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           01V1-a]
          Length = 742

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|291303528|ref|YP_003514806.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
           44728]
 gi|290572748|gb|ADD45713.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
           44728]
          Length = 762

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 45/190 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D ++  + + +L   P     + A AGSGKT +L QR+  L+ +   HP  +L +T T
Sbjct: 19  LLDGLNDPQRQAVLHEGP--PLLIVAGAGSGKTRVLTQRIAHLVAVRGVHPGEILAITFT 76

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++   + +                                      +
Sbjct: 77  NKAAAEMRDRVSSVVGNRARM--------------------------------------M 98

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++     N+ S F + D + S++L+++  +       LD     +  
Sbjct: 99  WVLTFHAACMRILRREHERLNLKSTFTVYDSDDSRRLMQQVARDM----ELDKRHTPRGL 154

Query: 192 FYEILEISND 201
              +  + N+
Sbjct: 155 LASVSRLKNE 164


>gi|309803805|ref|ZP_07697890.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           11V1-d]
 gi|312873066|ref|ZP_07733125.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1]
 gi|308164039|gb|EFO66301.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           11V1-d]
 gi|311091299|gb|EFQ49684.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1]
          Length = 742

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|166367339|ref|YP_001659612.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843]
 gi|166089712|dbj|BAG04420.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843]
          Length = 773

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 13  TIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           T D + Q    Q LA +       V A AGSGKT  L  R+  L+      P  +L +T 
Sbjct: 4   TADYLEQLNPSQRLAVEHFCGPLLVVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-G 129
           T  AA EM  R+ +               E+ +            + + L   +      
Sbjct: 64  TNKAAREMKTRIEKTFAQQKAQEKYGQRLELLEEY----------EQKKLFSQVYRHYTK 113

Query: 130 GLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAK 173
            L + T H+ C  I++    ++  E   +   +F+I DE  ++ L++   
Sbjct: 114 KLWIGTFHSLCGRILRYDINKYQDEYGHSWQRNFSIMDESDAQSLVKNIV 163


>gi|326792061|ref|YP_004309882.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326542825|gb|ADZ84684.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 781

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
           +D        Q  A         + A AGSGKT +L  R+  L+      P ++L +T T
Sbjct: 1   MDFTKGLNERQKEAVLHTEGPLLILAGAGSGKTRVLTHRIAHLVENKGVKPWSILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                       +    +
Sbjct: 61  NKAAKEMKERIGNLVAE-------------------------------------DAVNEM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I++++      +  F I D    K LI++  K+ 
Sbjct: 84  WVSTFHSMCVRILRRYGERLGYSRFFTIYDTSDQKTLIKDTLKAL 128


>gi|271962781|ref|YP_003336977.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505956|gb|ACZ84234.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021]
          Length = 762

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++  + E ++         + A AGSGKT +L  R+  LL    A P  +L +T T
Sbjct: 22  LLDGLNPQQREAVV--HHGSPLLIVAGAGSGKTRVLTHRIAYLLGERGAQPQEILAITFT 79

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  +I   S                                        +
Sbjct: 80  NKAAREMKDRVDNLIGPRS--------------------------------------AAM 101

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++        S F+I D+  S++L+    +  
Sbjct: 102 WVMTFHSACVRILRREAKRLGFPSSFSIYDQADSQRLMAMVCREM 146


>gi|206559816|ref|YP_002230580.1| putative helicase [Burkholderia cenocepacia J2315]
 gi|198035857|emb|CAR51748.1| putative helicase [Burkholderia cenocepacia J2315]
          Length = 818

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 34  DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 93

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 94  KAAREMMARLSAMMPIDTR--------------------------------------GMW 115

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 116 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 171

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 172 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 216


>gi|312875404|ref|ZP_07735408.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b]
 gi|311089067|gb|EFQ47507.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b]
          Length = 742

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|325107376|ref|YP_004268444.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis
           DSM 5305]
 gi|324967644|gb|ADY58422.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis
           DSM 5305]
          Length = 770

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 63/186 (33%), Gaps = 45/186 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T S+Q           V A  GSGKT ++ QRV RL+    +P  +L +T T  AA+
Sbjct: 15  IQLTPSQQAAVEHVEGPMLVLAGPGSGKTRVVTQRVARLIEKGINPWNILAITFTNKAAS 74

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EMS R+                                          L     L V T 
Sbjct: 75  EMSERL----------------------------------------QGLTDTRNLWVSTF 94

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEI 195
           H FC  +++Q      +  +F I D    K    +A K  L+ +  D       K    I
Sbjct: 95  HRFCANVLRQRANVVGLQQNFTILDSADQK----QAIKQVLSELDFDAAHYPPGKILATI 150

Query: 196 LEISND 201
               ND
Sbjct: 151 SNAKND 156


>gi|253580201|ref|ZP_04857468.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848720|gb|EES76683.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 744

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 43/184 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
              +Q           + A AGSGKT +L  R+  L+     +P  +L +T T  AA+EM
Sbjct: 9   NPQQQEAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIDKKGINPWNILAITFTNKAASEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   S                                        + V T H+
Sbjct: 69  RERVDKIVGFGSE--------------------------------------SVWVSTFHS 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I++++       + FAI D E  K L++E  +     + +D  +  +++    +  
Sbjct: 91  TCVRILRRYIDRLGYDTRFAIYDTEDQKTLMKEVCR----KLNIDTKKTKERSLLAQISH 146

Query: 199 SNDE 202
           + DE
Sbjct: 147 AKDE 150


>gi|300932549|ref|ZP_07147805.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 864

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
             ++ ++  + E +L         + A AGSGKT +L +R+  LL     P  +L +T T
Sbjct: 48  NLLEGLNPQQEEAVL--HRGGPLLIVAGAGSGKTSVLTRRIAHLLQTGVAPWQVLAITFT 105

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV++++   +                                        +
Sbjct: 106 NKAAGEMRERVVDLVGPQAE--------------------------------------KM 127

Query: 132 KVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS 175
            V T H+ C  I++        + ++F I D + SK+LI    K 
Sbjct: 128 WVSTFHSMCVRILRANANLVPGLNTNFTIYDSDDSKRLITMVIKD 172


>gi|325103975|ref|YP_004273629.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
 gi|324972823|gb|ADY51807.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
          Length = 768

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 76/221 (34%), Gaps = 48/221 (21%)

Query: 13  TIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            +D +    S Q  A +       + A AGSGKT ++  RV  L+     P  +L LT T
Sbjct: 2   ILDYLKGLNSSQRQAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIQKGVDPFQILVLTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++   +                                        +
Sbjct: 62  NKAAKEMRDRITKVVGPEAK--------------------------------------NI 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN----- 185
            + T H+    I++    +    S+F I D + SK LI+   K   L   + + N     
Sbjct: 84  WMGTFHSIFAKILRVEANKLGYPSNFTIYDTDDSKSLIKAILKEMNLDDKLYNPNFVYGR 143

Query: 186 -EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFF 225
               K       E  N+E I+    D  + R  L  ++  +
Sbjct: 144 ISMAKNNLISAAEYQNNEQIQA--DDFSTGRGQLGKVYATY 182


>gi|227494729|ref|ZP_03925045.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831729|gb|EEH64112.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 868

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 41/171 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           F + SE ++ ++    +Q   +       V A AGSGKT +L  R+  LL    A    +
Sbjct: 45  FNDGSELLEGLN--PQQQEAVTHAGAPLLVIAGAGSGKTRVLTHRIAYLLQTGRARAGEI 102

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AAAEM  RV  ++   +                                   
Sbjct: 103 LAITFTNKAAAEMRERVANLVGPQAR---------------------------------- 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                + V T H+ C  I+++    A + S F I D   S++LI    K+ 
Sbjct: 129 ----RMWVFTFHSACVRILREQYQAAGLRSSFTIYDAADSQRLITLVSKNL 175


>gi|325109169|ref|YP_004270237.1| exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305]
 gi|324969437|gb|ADY60215.1| Exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305]
          Length = 1168

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 23/192 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAAAA 76
           T  +         S  ++A AG GKT +L QR +  LL      TL   + +T T  AA 
Sbjct: 4   TPQQAQAIQTRDVSIALAAGAGCGKTFVLTQRFVTELLQQPSAETLSGLMAITFTDRAAR 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ E +       D++L+ E       +               IL+     +VQTI
Sbjct: 64  EMRDRIREAVR------DQLLTCEDADQPAWQ--------------EILQNLETARVQTI 103

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFC A ++    E  +   F + DE  +  +  +  +S L+ ++ + N +L++      
Sbjct: 104 HAFCGATLRTHATELGLDPDFGMLDEPTAAAMRNQVIQSELSRLLRERNADLQELILRYG 163

Query: 197 EISNDEDIETLI 208
                  +++L+
Sbjct: 164 LEGTMSRLQSLV 175


>gi|169350949|ref|ZP_02867887.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552]
 gi|169292011|gb|EDS74144.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552]
          Length = 714

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL       Q  A+    S   + A AGSGKT ++  R+  L+      P  +L +T T
Sbjct: 1   MDLDKLLNKNQKEAATYLDSHLRIIAGAGSGKTRVITYRIAYLIDEIGVDPRKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV++++                                      +   G L
Sbjct: 61  NKAANEMKERVVDLLG-------------------------------------VHALGSL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + TIH+ C  I++Q     N  S+F I DEE  K LI++     
Sbjct: 84  -ICTIHSLCVRILRQHINVINYPSNFTIMDEEDQKALIKKIYNQL 127


>gi|315224517|ref|ZP_07866344.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287]
 gi|314945538|gb|EFS97560.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287]
          Length = 1060

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 97/209 (46%), Gaps = 20/209 (9%)

Query: 28  SDPTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVL 83
           + P+ +  + +A+AGSGKT+ LV+  LR++L +  P     LL +T T  A  EM +R++
Sbjct: 2   NTPSANYTIYNASAGSGKTYSLVKAYLRIILGSKQPDLFRQLLAITFTNKAVFEMKNRII 61

Query: 84  EIITAWSH----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           E++  +S          +  E+ K     P++    ++   L  IL       + TI  F
Sbjct: 62  ELLGVFSEDKMLTKPHAMFTELAKELN-LPDEELRMRSAKALEHILHNYAAFNISTIDGF 120

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-- 197
              +++ F  + ++   F +  +  SK L+E +  + +      N+ EL +   +     
Sbjct: 121 NHQLIRHFSQDLHLNPFFEV--QLDSKALLERSVDNLMNQA--GNDPELTQLLIDFANEK 176

Query: 198 ISNDEDIETL-----ISDIISNRTALKLI 221
           I +D+  +T      ++++++N    + +
Sbjct: 177 IDDDKSWDTTKELLGVAEMLTNENHYEQL 205


>gi|269836802|ref|YP_003319030.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
 gi|269786065|gb|ACZ38208.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
          Length = 738

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 57/233 (24%)

Query: 14  IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +DL+      +Q   +       V A  GSGKT +L  RV  L+      P  +L +T T
Sbjct: 10  VDLLRGLNEAQQRAVTITEGPVLVVAGPGSGKTRVLTHRVAYLIDQRGVSPWNILAVTFT 69

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                             +AR L           
Sbjct: 70  NKAAREMRDRLEVLVGP--------------------------ERARQL----------- 92

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++      +   F I D+        +A +  L ++ LD  +   + 
Sbjct: 93  TVGTFHALCVRILRRDGHLIGLDPRFTIYDDADQI----DAVRQALKALNLDPKQFPPRP 148

Query: 192 FYEILEISND---------EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
               +  +           E +ET   +I+S     ++   +   L R + ++
Sbjct: 149 ILSRISAAKSQVVDPARFAEQVETYWEEIVS-----RVYPRYQEILRRNRALD 196


>gi|260430925|ref|ZP_05784896.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414753|gb|EEX08012.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 800

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +++    Q  A +       + A AG+GKT  L  R+  LL    A P+ +L +T T 
Sbjct: 28  DYLNELNPAQREAVELLDGPILMLAGAGTGKTKALTTRIAHLLNTGRARPNEILAVTFTN 87

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                      G   
Sbjct: 88  KAAREMKERVGRLLGQPAE-------------------------------------GMPW 110

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  ++++    A + S+F I D +   +L+++  +    +  +D+     +  
Sbjct: 111 LGTFHSICVKLLRRHAELAGLKSNFTILDTDDQLRLLKQLVQ----AANIDDKRWPARML 166

Query: 193 YEILEISNDEDI 204
             I++   +  +
Sbjct: 167 AGIIDDWKNRAL 178


>gi|241667801|ref|ZP_04755379.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876345|ref|ZP_05249055.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842366|gb|EET20780.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 742

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 44/193 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D +S    +Q  A+    R++ + A AGSGKT +L  R+  L          +L +T T 
Sbjct: 5   DFLSGLNPQQKKATLLEDRNSLILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+ HRV +++   +                                       G+ 
Sbjct: 65  KAAKEIQHRVEKMLGISTF--------------------------------------GMW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H     ++++   E  +  +F I D+++  +LI    K  + S+ LD+ +   K  
Sbjct: 87  IGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLI----KKVIKSLDLDDKKYPPKLL 142

Query: 193 YEILEISNDEDIE 205
              +    D+ + 
Sbjct: 143 QNFINKQKDKAVR 155


>gi|90419186|ref|ZP_01227096.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336123|gb|EAS49864.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1]
          Length = 852

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 43/198 (21%)

Query: 9   EHSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
            ++   D +S   +EQ  A + T     V A AG+GKT +L  R+  +L    A PS +L
Sbjct: 3   RNARAPDYLSGLNAEQRAAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAWPSQIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 63  AVTFTNKAAREMKQRIGLLVGEQVE----------------------------------- 87

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    I+++    A + S+F I D +   +LI++     + +  LD+  
Sbjct: 88  --GMPWLGTFHSIGVKILRRHAELAGLKSNFTILDTDDQIRLIKQ----LIKAENLDDKR 141

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +L+   ++ +
Sbjct: 142 WPARTFANMLDGWKNKAL 159


>gi|15602276|ref|NP_245348.1| DNA-dependent helicase II [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720662|gb|AAK02495.1| UvrD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 726

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 37/158 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A  P  +  V A AGSGKT +L  R+  L+ +      +++ 
Sbjct: 2   DISALLDGLNDKQRDAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEQVSEGSIMA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+   +   +                          ++ L       
Sbjct: 60  VTFTNKAAAEMRHRIESTLANHA--------------------------SQRLF------ 87

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G+ V T H+    +++   L+AN+   F I D +  
Sbjct: 88  --GMWVGTFHSIAHRLLRAHHLDANLPQDFQILDADDQ 123


>gi|323484921|ref|ZP_08090276.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
 gi|323401802|gb|EGA94145.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
          Length = 813

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 43/184 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT +L  R+  L+     +P  ++ +T T  AAAEM
Sbjct: 8   NPMQQEAVYHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   +                                        + V T H+
Sbjct: 68  RERVDKIVGFGAE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I+++       +++F I D +  + L+++  K     + +D  +  ++A    +  
Sbjct: 90  SCVRILRRHIEYLGYSTNFTIYDGDDQRTLMKQIFKR----LDVDTKQFKERAVLSRISS 145

Query: 199 SNDE 202
           + D+
Sbjct: 146 AKDD 149


>gi|189463365|ref|ZP_03012150.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136]
 gi|189429794|gb|EDU98778.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136]
          Length = 1110

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 91/207 (43%), Gaps = 10/207 (4%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +HN+         +   T  +Q    +D  R     A+AGSGKT  L  + ++ L+ + H
Sbjct: 6   FHNTSLNLLFLFSIFVFTNRKQRKKMTDYPRLLVYKASAGSGKTFTLAVQYIKQLIEDTH 65

Query: 62  P-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARH 119
               +L +T T  A AEM  R+LE +   ++      S     ++    N++++ + AR 
Sbjct: 66  AYRRILAVTFTNKATAEMKKRILEQLFGLANGLKSSDSYLEELLKITSKNEAEIRRAARE 125

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            L  I+      +++TI +F +++M+    E  + ++ +I  E  +  ++ +A  + +  
Sbjct: 126 ALTNIIHDYSRFRIETIDSFFQSVMRNLARELELGANMSI--ELNNADVLSDAVDAMIEK 183

Query: 180 IMLDNNEELKKAFYEILEISNDEDIET 206
           +     +      Y +LE   +   + 
Sbjct: 184 L-----DRRSPVLYWLLEYIEERIADD 205


>gi|134300187|ref|YP_001113683.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1]
 gi|134052887|gb|ABO50858.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1]
          Length = 730

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 43/190 (22%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++++SQ    Q  A         V A AGSGKT +L  R+ ++L     P  +L +T T 
Sbjct: 1   MNILSQLNPAQEEAVQHTEGPLLVLAGAGSGKTRVLTHRIAQILSQGVRPYNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        L 
Sbjct: 61  KAANEMRARVENLVPQAAK--------------------------------------DLW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I+++        S+F+I D+   + +I+E     L  + +D      +A 
Sbjct: 83  VTTFHSACLRILRREIDVMGYGSNFSIYDDADQQTVIKEC----LKELEIDEKRFQPRAM 138

Query: 193 YEILEISNDE 202
              +  + ++
Sbjct: 139 LSAISGAKNK 148


>gi|34557616|ref|NP_907431.1| putative recombination protein RecB [Wolinella succinogenes DSM
           1740]
 gi|34483333|emb|CAE10331.1| HELICASE [Wolinella succinogenes]
          Length = 905

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 11/194 (5%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +      + A+AGSGKT  L  R L LL   AHPS +L LT T+ AA EM  R+ + + A
Sbjct: 2   ERDELLALRASAGSGKTFALTLRYLALLFKGAHPSEILTLTFTRKAALEMKERITQALVA 61

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E     +  ++     ++   K   +    L+    L++ TI AF  +I+++F 
Sbjct: 62  LQQG--EENPYLLGLVEAGITEEAIQEKRAEVYWRFLQ--ADLRITTIDAFLHSIVRKFC 117

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
               I   F IA  ++     E   +  L+ +   + E L +    + E    E I   +
Sbjct: 118 WYIGIPHDFTIASVDE-----EAIMEDFLSRLSAKDQESLLEL--SVEESKGVEAILRFL 170

Query: 209 SDIISNRTALKLIF 222
            D+      L   +
Sbjct: 171 RDLWHKEGELSQEY 184


>gi|94992155|ref|YP_600254.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
 gi|94545663|gb|ABF35710.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
          Length = 863

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++ G   + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLGQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|256824633|ref|YP_003148593.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547]
 gi|256688026|gb|ACV05828.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547]
          Length = 831

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           E ++ ++  + E +L +       + A AGSGKT +L  R+  LL     HP  +L +T 
Sbjct: 71  ELLEGLNPPQREAVLHA--GSPLLIIAGAGSGKTRVLTHRIAHLLRHRGVHPGQILAITF 128

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV  ++   +                                        
Sbjct: 129 TNKAAAEMRERVEALVGPPAR--------------------------------------A 150

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + V T H+ C  I+++      + S F+I D   S++LI    +  
Sbjct: 151 MWVSTFHSACVRILRREAKTVGLRSTFSIYDAADSQRLISLVLREL 196


>gi|224543224|ref|ZP_03683763.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523857|gb|EEF92962.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM
           15897]
          Length = 710

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 60/166 (36%), Gaps = 42/166 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            E   L++  + E     D      + A AGSGKT ++  R+  L+     +P  +L +T
Sbjct: 1   MELSQLLNPKQLEAATYLD--GHLRIIAGAGSGKTRVITYRIAYLIEEVGVNPHNILAIT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+                                        T  
Sbjct: 59  FTNKAANEMKTRVESILG---------------------------------------TSL 79

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G  + TIH+ C  +++Q         +F I DEE  K LI++  K 
Sbjct: 80  GTTICTIHSLCVRVLRQHSTAIGYPHNFIIMDEEDQKSLIKKLYKE 125


>gi|256397096|ref|YP_003118660.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM
           44928]
 gi|256363322|gb|ACU76819.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM
           44928]
          Length = 806

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D +++ + E +L +       + A AGSGKT +L  R+  L+   +AHP ++L +T 
Sbjct: 59  KLLDGLNEPQREAVLHA--GGPLLIIAGAGSGKTRVLAHRIAYLVGERHAHPGSILAITF 116

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV E++   + L                                      
Sbjct: 117 TNKAAAEMRQRVEELVGPRARL-------------------------------------- 138

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + V T H+ C  I++     A + S+F+I D   S++L+    +  
Sbjct: 139 MWVSTFHSACVRILRAQAKTAGLPSNFSIYDTADSQRLMTMVLRDL 184


>gi|237811975|ref|YP_002896426.1| DNA helicase II [Burkholderia pseudomallei MSHR346]
 gi|237506796|gb|ACQ99114.1| DNA helicase II [Burkholderia pseudomallei MSHR346]
          Length = 787

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|57169065|ref|ZP_00368192.1| helicase, putative [Campylobacter coli RM2228]
 gi|57019523|gb|EAL56214.1| helicase, putative [Campylobacter coli RM2228]
          Length = 920

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 10/171 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK A+ EM  R++E        S
Sbjct: 7   LALEASAGSGKTFALSVRFVALILQGAKINEILALTFTKKASNEMKKRIIETFLNLEKES 66

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            +    E+ ++ G + ++  + + +     + +    LK+ T  +F   I++ F L   +
Sbjct: 67  KKSECKELCELLGCEEDELILLRDKKKQEFLRQ---ELKISTFDSFFSRILRAFALNLGL 123

Query: 154 TSHFAIADE--EQSKKLIEEAKKSTLASIM-----LDNNEELKKAFYEILE 197
           +S F  ++E  +     ++   +  L  +      L++N +  +      E
Sbjct: 124 SSDFDTSEEKLDVRAVFLKLLNRQELKDLAYYKVSLEDNHDFFEELENFYE 174


>gi|78066057|ref|YP_368826.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383]
 gi|77966802|gb|ABB08182.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383]
          Length = 787

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIKQGYASPPTVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|309805876|ref|ZP_07699911.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b]
 gi|308167785|gb|EFO69929.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b]
          Length = 577

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           V A AGSGKT +L +R+  L+      P  +L +T T  A
Sbjct: 7   LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RV +++ + +                                        + + 
Sbjct: 67  ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I++++  +    ++F+IAD  +   LI    K  L  + +D+ +   K+   
Sbjct: 89  TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144

Query: 195 ILEISNDEDIE 205
            +  + ++ ++
Sbjct: 145 AISNAKNDLLD 155


>gi|161525045|ref|YP_001580057.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|189350212|ref|YP_001945840.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Burkholderia
           multivorans ATCC 17616]
 gi|160342474|gb|ABX15560.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|189334234|dbj|BAG43304.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Burkholderia
           multivorans ATCC 17616]
          Length = 786

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + ++ +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKTLNVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|58584432|ref|YP_198005.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418748|gb|AAW70763.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 1119

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 45/222 (20%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             +P  S WV+A+AG+GKT IL+ RVLRLLL N     + CLT T AAA EM  R+  I+
Sbjct: 5   IINPNFSVWVNASAGTGKTKILIDRVLRLLLENK--RNIFCLTFTNAAANEMESRIHNIL 62

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSD--------------------------------M 114
           + W+  SD  L A + ++                                         +
Sbjct: 63  SKWAVCSDNELIASLEQLDLSLLLLQHHYPPSHPFLSSQCLTLRSRWPQTKNSEVFNHYL 122

Query: 115 SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            +AR L   +      L +QT+HAFC  ++  FP EA I  +  +    + K+L      
Sbjct: 123 IQARRLFSELENL--DLTIQTVHAFCYKLISSFPAEAGIVPNCTL---SECKELHSIVFD 177

Query: 175 STLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
             L      +NE ++ +   I    ++  +  L+  +   R+
Sbjct: 178 KLL------HNEAVQDSIKFIAAEVDENKLRDLLYTLCIKRS 213


>gi|148266336|ref|YP_001233042.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
 gi|146399836|gb|ABQ28469.1| ATP-dependent DNA helicase PcrA [Geobacter uraniireducens Rf4]
          Length = 744

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 44/189 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++           + A AGSGKT ++V R+  L+   +  P  +L +T T  A
Sbjct: 4   LHNLNPPQKEAVLHGEGPLLILAGAGSGKTRVIVHRIAYLIKERSVPPWQILAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++                   G+ P                       + 
Sbjct: 64  AGEMRERVEKLLGG-----------------GELPL----------------------IS 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++        ++FAI D++ ++KL++E      A + LD      K+F  
Sbjct: 85  TFHSACARILRREIHHLGYDANFAIYDDKDAEKLLKEIV----AELNLDEKRYPVKSFIA 140

Query: 195 ILEISNDED 203
            ++   +  
Sbjct: 141 AIDECKNAG 149


>gi|213965014|ref|ZP_03393213.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
 gi|213952550|gb|EEB63933.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
          Length = 899

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 41/164 (25%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+     +Q  A +   S   + A AGSGKT +L +R+  L+      PS +L +T T  
Sbjct: 76  LLEGLNPQQRQAVEHIGSPLLIVAGAGSGKTSVLTRRIAYLIGARGVLPSQILAITFTNK 135

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV  ++                                       +    + V
Sbjct: 136 AAAEMRERVAGLVG--------------------------------------DQAQRMWV 157

Query: 134 QTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C  I++ Q  L   + S+F+I D + S++L+    K  
Sbjct: 158 STFHSMCVRILRMQHALVPGLNSNFSIYDSDDSRRLLSMIAKDM 201


>gi|307944882|ref|ZP_07660219.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4]
 gi|307771806|gb|EFO31030.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4]
          Length = 801

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++    ++L          V A AG+GKT +L  R+  +L    A P  +L +T T
Sbjct: 40  YLDGLN--PEQRLAVETIDGPVLVLAGAGTGKTRVLTTRIAHILATGNARPFEVLAVTFT 97

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   I                                          G  
Sbjct: 98  NKAAREMKERISGFIGGSVE-------------------------------------GMS 120

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++      + S F+I D +   +L+++     + +  LD+     +A
Sbjct: 121 WLGTFHSICMKILRKHAELVGLKSGFSILDTDDQIRLMKQ----IIQAEGLDDKRWTARA 176

Query: 192 FYEILEISNDEDI 204
           F  +++   +  +
Sbjct: 177 FASLIDGWKNRAL 189


>gi|299138774|ref|ZP_07031952.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
 gi|298599410|gb|EFI55570.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
          Length = 1202

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 12/223 (5%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMS 79
           + +  A D   S  V A AGSGKT +L+QR L+LL  +    P  +L +T T+ A AE+ 
Sbjct: 15  AARTSALDTKASWIVEAPAGSGKTGLLMQRYLKLLTEDGVVQPEEVLAITFTRKATAELR 74

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+L  +    H +  +      +   ++   + +++   L   ++E P  L+V+TI + 
Sbjct: 75  ARILTELEKAHHETPLLDQNSTFERATREFATAVLARDAALGWELIENPQRLRVRTIDSV 134

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--E 197
           C  I    PL +   S  +    E ++ L   A + TL  +   ++  L  A   IL   
Sbjct: 135 CAEIASTLPLLSG--SGGSRTPVEDAEPLYRLAARRTLMQLG-GSDAALHTALRTILLHR 191

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240
             +  D ETL++ +++ R     +         R++++ +   
Sbjct: 192 DGSLSDCETLLARMLAAREQWGEL-----IPLDRELLDDAALD 229


>gi|167760475|ref|ZP_02432602.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704]
 gi|167661841|gb|EDS05971.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704]
          Length = 743

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 43/184 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 8   NEQQKEAVLHTEGPLLILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAAGEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   +                                        + V T H+
Sbjct: 68  RERVDKLVGFGAE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I+++        ++F I D +  K L+++  K     + +D     ++A    +  
Sbjct: 90  TCVRILRRHIDLLGYDNNFTIYDSDDQKTLMKDVCKL----LQIDTKIFKERALLSTISH 145

Query: 199 SNDE 202
           + DE
Sbjct: 146 AKDE 149


>gi|144899243|emb|CAM76107.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 745

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 50/218 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           LI     +    +       V + AG+GKT +L  R+ ++L    A P  +L +T T  A
Sbjct: 34  LIGLNPEQHQAVTTTEGPVLVLSGAGTGKTRVLTSRLAQILAGRRAQPWQILAVTFTNKA 93

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM +RV  ++   +                                        L + 
Sbjct: 94  AREMKNRVAHMVGPVAE--------------------------------------QLWLG 115

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++      + S+F I D +   +L+++     + +  +DN +   ++   
Sbjct: 116 TFHSLCVRILRRHAEAVGLKSNFTILDADDQLRLLKQ----VMEAEHIDNKKWPAQSLMG 171

Query: 195 ILEISNDEDI------ETLISDIISNRTALKLIFFFFS 226
            ++   D  +        L  D+   R   +L   +  
Sbjct: 172 AIQRWKDRGLTPDKIGADLAGDLAGGRAG-QLYRLYQE 208


>gi|187776812|ref|ZP_02993285.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC
           15579]
 gi|187775471|gb|EDU39273.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC
           15579]
          Length = 738

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL ++   EQ   A+       + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKNKLNKEQYEAATTIDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                           G+
Sbjct: 61  NKAAGEMKERIKALVGDVVE--------------------------------------GM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +F I D    K L+++  +  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127


>gi|260061427|ref|YP_003194507.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501]
 gi|88785559|gb|EAR16728.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501]
          Length = 1039

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 8/175 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           SA+AGSGKT+ L +  L+LLL+         +L +T T  A  E+ +R+L+ + A++ + 
Sbjct: 12  SASAGSGKTYTLTREYLKLLLSGQGGQPFREILAITFTNKAVGELKNRILDSLEAFAGVR 71

Query: 94  DEILSAEITKIQGKKPNKSDMSKAR---HLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           DE     + +    +      + AR    +L  IL       V TI  F   I++ F  +
Sbjct: 72  DEAGRPVLFRDLQDELGTDRETLARRSGRVLQEILHNYAFFDVSTIDRFNHRILRTFARD 131

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             + ++F +  +  +  L+E+A ++ +               Y + + ++D   +
Sbjct: 132 LQLPANFEVVLDTDA--LLEQAVENLILQAGEVPALTRVLIDYALEKSADDRSWD 184


>gi|255020260|ref|ZP_05292329.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC
           51756]
 gi|254970402|gb|EET27895.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC
           51756]
          Length = 729

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 42/190 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + I     ++     P   A V A AGSGKT +L+ R+  LL     P+ +L +T T  A
Sbjct: 17  EWIQLNDQQREAVLLPPGPALVLAGAGSGKTRVLISRIAHLLEEGVRPAEILAVTFTNKA 76

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A  M  R+  ++                                            L + 
Sbjct: 77  ARSMRERLAALVQV--------------------------------------DLAPLWMG 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     ++++      + + F + D + S++L+  A    L  + LD  +   +A   
Sbjct: 99  TFHGIAHRLLRRHAEALGLPADFQVLDSDDSQRLVRRA----LRELGLDEKQWTPRALAA 154

Query: 195 ILEISNDEDI 204
            +    DE  
Sbjct: 155 QIGRWKDEGW 164


>gi|222053487|ref|YP_002535849.1| UvrD/REP helicase [Geobacter sp. FRC-32]
 gi|221562776|gb|ACM18748.1| UvrD/REP helicase [Geobacter sp. FRC-32]
          Length = 746

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 44/189 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++           + A AGSGKT ++V R+  L+      P  +L +T T  A
Sbjct: 4   LHNLNPPQKDAVLHGEGPLLILAGAGSGKTRVIVHRIAYLITERGVPPWQILAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++                                              + 
Sbjct: 64  AAEMRGRVEKLLPGGETPL---------------------------------------IS 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++        S FAI D++  +KLI+E      A + LD      K F  
Sbjct: 85  TFHSACARILRREIHHLGYDSSFAIYDDKDGEKLIKEIV----AELHLDEKRFPAKLFTA 140

Query: 195 ILEISNDED 203
            ++   +  
Sbjct: 141 AIDECKNAG 149


>gi|302544595|ref|ZP_07296937.1| ATP-dependent DNA helicase PcrA [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462213|gb|EFL25306.1| ATP-dependent DNA helicase PcrA [Streptomyces himastatinicus ATCC
           53653]
          Length = 823

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 44/193 (22%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+     +Q  A + T S   + A AGSGKT +L  R+  LL   + HP  +L +T T  
Sbjct: 70  LLEGLNEQQRAAVEHTGSPLLIVAGAGSGKTRVLTHRIAYLLGTRHVHPGQILAITFTNK 129

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV E++   +                                        + V
Sbjct: 130 AAGEMKERVEELVGPRA--------------------------------------NAMWV 151

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++   +   TS F+I D   SK+L+    +     + LD  +   K+F 
Sbjct: 152 MTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRD----LDLDPKKFPPKSFS 207

Query: 194 EILEISNDEDIET 206
             +    +E I+ 
Sbjct: 208 AKISNLKNELIDE 220


>gi|306833181|ref|ZP_07466311.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338]
 gi|304424755|gb|EFM27891.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338]
          Length = 1210

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R++  +L       L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+                   +   ++  +  ++ L   L       + T+ AF
Sbjct: 89  ERIEKKIS-------------------QALQETTDNDLKNYLNEQLLGLQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ Q+     I+  F I  D+ +   L  E      +  M  NN EL +        
Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTDKSEQDILKNEVFFDLFSDYMTGNNAELFRQLVR--NF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           S +    T    I+      K+  F  +    +K + +   
Sbjct: 188 SGNRKDSTAFRGIV-----YKIYDFSQATDNPQKWLAEVFL 223


>gi|254282526|ref|ZP_04957494.1| DNA helicase II [gamma proteobacterium NOR51-B]
 gi|219678729|gb|EED35078.1| DNA helicase II [gamma proteobacterium NOR51-B]
          Length = 718

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE ++ ++  +  Q +A++P+    V A AGSGKT +LV R+  L+   N  P+ +L 
Sbjct: 2   DVSEILNPLNDAQR-QAVAAEPSHQ-LVLAGAGSGKTRVLVHRIAWLIRAENYSPNAVLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++   +H                                    
Sbjct: 60  VTFTNKAAREMRGRIESMLQLPTH------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             GL + T H     +++     AN+  +F I D +   +L++   +     + LD +  
Sbjct: 84  --GLWIGTFHGLAHRLLKAHWKAANLPQNFQILDSDDQLRLVKRVCR----ELDLDESRW 137

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    DE +  
Sbjct: 138 PPKQAQWYINGQKDEGLRA 156


>gi|210608461|ref|ZP_03287837.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787]
 gi|210153037|gb|EEA84043.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787]
          Length = 741

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 52/201 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K ++           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 8   NKEQREAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIDEKGVNPWNILAITFTNKAAGEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   S                                        + V T H+
Sbjct: 68  RERVDQIVGFGSE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNE 186
            C  I+++        + F I D +  K L+++             +++ LA+I    +E
Sbjct: 90  TCVRILRRHIDLLGYDTSFTIYDADDQKTLMKDVCKYLQIDTKVYKERNLLAAISSAKDE 149

Query: 187 ELKKAFYEILEISNDEDIETL 207
            +    YE+   + D   + +
Sbjct: 150 LITPEEYEL-NAAGDFGKQKI 169


>gi|319792357|ref|YP_004153997.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315594820|gb|ADU35886.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 808

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 80/234 (34%), Gaps = 46/234 (19%)

Query: 6   SFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           +   +   + L+     EQ  A   P  +A + A AGSGKT +L  R+  LL        
Sbjct: 7   AADANPSELPLLQNLNPEQRAAVTLPQGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAG 66

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  R+  I+                                     
Sbjct: 67  GILAVTFTNKAAKEMMTRLTAILPV----------------------------------- 91

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                 G+ + T H  C  +++     AN+ S F I D +        A K  +    +D
Sbjct: 92  ---NVRGMWIGTFHGLCNRLLRAHWKLANLPSTFQILDTQDQLS----AIKRLMKQFNVD 144

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
           +     K     +  + ++ +     +I S  +R  ++L   +     R  +++
Sbjct: 145 DERFPAKQTQWFIAGAKEDGLRPKDVEIRSDDDRKKVELYQLYEEQCQREGVVD 198


>gi|291521009|emb|CBK79302.1| ATP-dependent DNA helicase PcrA [Coprococcus catus GD/7]
          Length = 768

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 66/196 (33%), Gaps = 50/196 (25%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           S    +Q           + A AGSGKT +L  R+  L+     +P  +L +T T  AA 
Sbjct: 6   SLNPVQQEAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIDECQVNPWNILAITFTNKAAG 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +I+   +                                        + V T 
Sbjct: 66  EMRERVDQIVDFGAE--------------------------------------DIWVSTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-----------KKSTLASIMLDNN 185
           H+ C  I++++         F I D +  K +I+E            K+ TL S +    
Sbjct: 88  HSTCVRILRRYIDRLGYDRSFTIYDGDDQKTVIKEVCKKLNIDTKIYKERTLLSAISSAK 147

Query: 186 EELKKAFYEILEISND 201
           +E+      +L    D
Sbjct: 148 DEMIGPKEYLLRSEGD 163


>gi|207723734|ref|YP_002254132.1| dna helicase II (partial sequence) protein [Ralstonia solanacearum
           MolK2]
 gi|206588938|emb|CAQ35900.1| probable dna helicase II (partial sequence) protein [Ralstonia
           solanacearum MolK2]
          Length = 807

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 44/194 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P  SA + A AGSGKT +L  R+  L+ ++   PS +L +T T 
Sbjct: 3   DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSSRVSPSGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ R+  ++                                            + 
Sbjct: 63  KAAKEMTARLSAMLPI--------------------------------------NTRAMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D +        A K  L S+ +D+ +   K  
Sbjct: 85  IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKNV 140

Query: 193 YEILEISNDEDIET 206
              +  + ++ +  
Sbjct: 141 QYFINGAKEQGLRA 154


>gi|221197704|ref|ZP_03570750.1| DNA helicase II [Burkholderia multivorans CGD2M]
 gi|221204738|ref|ZP_03577755.1| DNA helicase II [Burkholderia multivorans CGD2]
 gi|221175595|gb|EEE08025.1| DNA helicase II [Burkholderia multivorans CGD2]
 gi|221181636|gb|EEE14037.1| DNA helicase II [Burkholderia multivorans CGD2M]
          Length = 786

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + ++ +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKTLNVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|154246915|ref|YP_001417873.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154161000|gb|ABS68216.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1131

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 7/170 (4%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S    ++    + +   S   RS  V A AGSGKT ++  R+  +L     P  +  +T
Sbjct: 2   MSRVSTVLKDDGARRDAISLHDRSILVEAGAGSGKTAVMAGRIAAMLAEGVSPRAIAAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA+E+  RV E +   + LSD  ++ E+        +++     R  L        
Sbjct: 62  FTELAASELLSRVREFV---ADLSDGKIATELRVALPHGLSQAH----RDNLAAASTAID 114

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            +   TIH FC+ +++ +P EA+I     + D  Q+     E     L  
Sbjct: 115 EITCSTIHGFCQRLIKPYPAEADIDPGAGVMDRNQADLTFLEIVDGWLRE 164


>gi|295677083|ref|YP_003605607.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295436926|gb|ADG16096.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 795

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL+S    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 13  DLLSNLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTN 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 73  KAAREMMARLSALLPIDTR--------------------------------------GMW 94

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A + + F I D          A K  +  + +D+ +   K  
Sbjct: 95  IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 150

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 151 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 195


>gi|221214933|ref|ZP_03587901.1| DNA helicase II [Burkholderia multivorans CGD1]
 gi|221165160|gb|EED97638.1| DNA helicase II [Burkholderia multivorans CGD1]
          Length = 786

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + ++ +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKTLNVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|149921690|ref|ZP_01910138.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1]
 gi|149817428|gb|EDM76900.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1]
          Length = 845

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 33/160 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I    +++           + A AG+GKT ++ QRV  L+        +L +T T  AA 
Sbjct: 5   IPLNPAQRAGVEYRGGPLLLLAGAGTGKTRVITQRVAALIDEGVPAWRILAVTFTNKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+  ++                        + ++ + R           G  + T 
Sbjct: 65  EMRERIAGLL------------------------EMELDELRR---------DGPWIGTF 91

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+ C  I+++      +T +F+I D +  K L+    K  
Sbjct: 92  HSICARILRRHGQGVGLTRNFSIYDADDQKTLMRRVLKDL 131


>gi|209519276|ref|ZP_03268077.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209500288|gb|EEA00343.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 797

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL+S    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 13  DLLSNLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTN 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 73  KAAREMMARLSALLPIDTR--------------------------------------GMW 94

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A + + F I D          A K  +  + +D+ +   K  
Sbjct: 95  IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 150

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 151 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 195


>gi|295092248|emb|CBK78355.1| Superfamily I DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 830

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
            DL++  + E            V A AGSGKT +L  R+  L+     +P  ++ +T T 
Sbjct: 5   FDLLNPKQKE--AVFHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV +I+   S                                        + 
Sbjct: 63  KAAAEMRERVDQIVGFGSE--------------------------------------SIW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I+++        + F I D +  + L+++  K  
Sbjct: 85  VSTFHSSCVRILRRHIDRLGYDTSFTIYDTDDQRTLMKQIFKRL 128


>gi|189463105|ref|ZP_03011890.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136]
 gi|189430084|gb|EDU99068.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136]
          Length = 784

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D +++    Q  A       + V A AGSGKT +L  ++  LL     P ++L LT T  
Sbjct: 3   DYLNELNESQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLDNGYEPWSILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   + A                           +AR+L            +
Sbjct: 63  AAREMKERIARRVGA--------------------------ERARYL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        +++F I D   SK LI+   K  
Sbjct: 86  GTFHSIFSRILRTEAAAIGFSANFTIYDAADSKSLIKAIIKEM 128


>gi|116689464|ref|YP_835087.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424]
 gi|116647553|gb|ABK08194.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia HI2424]
          Length = 787

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|326318047|ref|YP_004235719.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374883|gb|ADX47152.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 818

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 70/221 (31%), Gaps = 46/221 (20%)

Query: 19  QTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
               EQL A   P   A + A AGSGKT +L  R+  LL      P  +L +T T  AA 
Sbjct: 34  NLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYVSPGGILAVTFTNKAAK 93

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM+ R+  ++                                           G+ + T 
Sbjct: 94  EMTARLSAMLPV--------------------------------------NVRGMWIGTF 115

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H  C  +++     A + + F I D +        A K       +D      K     +
Sbjct: 116 HGLCNRLLRAHHKSAGLPATFQILDTQDQLS----AVKRLCKQFNIDEERFPPKQMAYFI 171

Query: 197 EISNDEDIETLISDI--ISNRTALKLIFFFFSYLWRRKIIE 235
               +E +     D      R  ++L   +     R  +++
Sbjct: 172 SGCKEEGLRPGDVDARDADGRKKVELYQLYEEQCQREGVVD 212


>gi|119899502|ref|YP_934715.1| DNA helicase II [Azoarcus sp. BH72]
 gi|119671915|emb|CAL95829.1| DNA helicase II [Azoarcus sp. BH72]
          Length = 739

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L++    +Q  A   P++ A + A AGSGKT +L  R+  L+ +  A P+ +L +T T 
Sbjct: 3   NLLANLNEQQHQAVTLPSQHALILAGAGSGKTRVLTTRIAWLVQSGQASPAEILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                            + 
Sbjct: 63  KAAKEMHARLAAMLPI--------------------------------------NTRSMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  L ++ +D+ +   +  
Sbjct: 85  IGTFHGLCNRLLRAHHRDAGLPQLFQILDSGDQLA----AIKRLLKTLNVDDEKFPPREL 140

Query: 193 YEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
              +    +        +      R  ++L   + +   R  +++
Sbjct: 141 QHFINGQKEAGFRPHAVEAWDEFTRQRVQLYQEYEAQCQRESVVD 185


>gi|167894600|ref|ZP_02482002.1| DNA helicase II [Burkholderia pseudomallei 7894]
 gi|167919264|ref|ZP_02506355.1| DNA helicase II [Burkholderia pseudomallei BCC215]
          Length = 787

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|56477926|ref|YP_159515.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313969|emb|CAI08614.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 740

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 42/225 (18%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P + A V A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 3   DLLANLNPEQLQAVTLPPQHALVLAGAGSGKTRVLTTRIAWLVQTGQVDPQGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R+  ++                                   ++   +  G+ 
Sbjct: 63  KAAKELLARLSAMLP----------------------------------LSFNRSARGMW 88

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  L ++ +D+ +   +  
Sbjct: 89  IGTFHGLCNRLLRAHHRDAGLPQLFQILDSGDQLA----AIKRLLKALNVDDEKFPPREL 144

Query: 193 YEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
              +    +  +     +   +  R  ++L   + S   R  +++
Sbjct: 145 QHFINGQKEAGLRPHAVEAWDDYTRRRVELYIEYESQCQRESVVD 189


>gi|254297873|ref|ZP_04965326.1| DNA helicase II [Burkholderia pseudomallei 406e]
 gi|157806965|gb|EDO84135.1| DNA helicase II [Burkholderia pseudomallei 406e]
          Length = 787

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|288905008|ref|YP_003430230.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus
           gallolyticus UCN34]
 gi|288731734|emb|CBI13295.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus
           gallolyticus UCN34]
          Length = 1210

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R++  +L       L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+                   +   ++  +  ++ L   L       + T+ AF
Sbjct: 89  ERIEKKIS-------------------QALQETTDNDLKNYLNEQLLGLQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ Q+     I+  F I  E  +   L  E      +  M  N+ EL +        
Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTEKSEQDILKNEVFFDLFSDYMTGNDAELFRQLVR--NF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           S +    T    I+      K+  F  +    +K + +   
Sbjct: 188 SGNRKDSTAFRGIV-----YKIYDFSQATDNPQKWLAEVFL 223


>gi|326800328|ref|YP_004318147.1| UvrD/REP helicase [Sphingobacterium sp. 21]
 gi|326551092|gb|ADZ79477.1| UvrD/REP helicase [Sphingobacterium sp. 21]
          Length = 761

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 72/222 (32%), Gaps = 48/222 (21%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D +      Q  A +       + A AGSGKT ++  RV  L+     P  +L LT T 
Sbjct: 1   MDYLQGLNPSQRAAVEQTDGPVMIVAGAGSGKTRVITYRVAHLIQKGIDPFNILVLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+++++   +                                        + 
Sbjct: 61  KAAKEMRERIMKVVGNEAK--------------------------------------NIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN------ 185
           + T H+    I++         ++F I D + SK LI    K   L   + + N      
Sbjct: 83  MGTFHSVFAKILRVEAHHIGYPANFTIYDTDDSKSLIRSILKEMQLDDKLYNANFVYNRI 142

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
              K       E   +  I+    D    R  L  I+  +S 
Sbjct: 143 SAAKNNLISAAEYQKNAQIQA--EDQSGGRGNLGQIYQTYSQ 182


>gi|291539996|emb|CBL13107.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis XB6B4]
          Length = 755

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 51/232 (21%)

Query: 13  TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           T+ +      +Q  A         + A AGSGKT +L  R   L+     +P  ++ +T 
Sbjct: 8   TMSIYDTLNEQQREAVYQTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITF 67

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ +I+   S                                        
Sbjct: 68  TNKAAGEMRERIDKIVGFGSE--------------------------------------S 89

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++        ++F I D + SK L+++  K     + +D     +K
Sbjct: 90  IWVSTFHSSCVRILRRHIDRIGFDTNFTIYDADDSKSLMKDICKR----LEIDTKIYKEK 145

Query: 191 AFYEILEISNDEDI-------ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +F   +  + DE I         L S   + R   ++   +   L +   ++
Sbjct: 146 SFLAAISSAKDELITPTELMQRALTSSDYAKRKQAEVYREYQEALHKNNALD 197


>gi|114326871|ref|YP_744028.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
 gi|114315045|gb|ABI61105.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
          Length = 759

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 40/163 (24%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +++   EQ  A +       V A AG+GKT +L  R   +L +  A P+ +L +T T  
Sbjct: 24  YLARLNPEQRAAVETIDGPLLVLAGAGTGKTRVLTTRFAHILKSGRAFPNQVLAVTFTNK 83

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  I+                                       E   GL +
Sbjct: 84  AAREMRERVGAILG--------------------------------------EKVEGLWL 105

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA C  ++++      ++S+F+I D +   +L+++  ++ 
Sbjct: 106 GTFHALCARMLRRHAEYVGLSSNFSILDSDDQMRLLKQVAETF 148


>gi|53725443|ref|YP_102655.1| DNA helicase II [Burkholderia mallei ATCC 23344]
 gi|67642678|ref|ZP_00441431.1| DNA helicase II [Burkholderia mallei GB8 horse 4]
 gi|121601559|ref|YP_992792.1| DNA helicase II [Burkholderia mallei SAVP1]
 gi|124385882|ref|YP_001026420.1| DNA helicase II [Burkholderia mallei NCTC 10229]
 gi|126449241|ref|YP_001080308.1| DNA helicase II [Burkholderia mallei NCTC 10247]
 gi|167001551|ref|ZP_02267346.1| DNA helicase II [Burkholderia mallei PRL-20]
 gi|254178093|ref|ZP_04884748.1| DNA helicase II [Burkholderia mallei ATCC 10399]
 gi|254199592|ref|ZP_04905958.1| DNA helicase II [Burkholderia mallei FMH]
 gi|254205910|ref|ZP_04912262.1| DNA helicase II [Burkholderia mallei JHU]
 gi|254358690|ref|ZP_04974963.1| DNA helicase II [Burkholderia mallei 2002721280]
 gi|52428866|gb|AAU49459.1| DNA helicase II [Burkholderia mallei ATCC 23344]
 gi|121230369|gb|ABM52887.1| DNA helicase II [Burkholderia mallei SAVP1]
 gi|124293902|gb|ABN03171.1| DNA helicase II [Burkholderia mallei NCTC 10229]
 gi|126242111|gb|ABO05204.1| DNA helicase II [Burkholderia mallei NCTC 10247]
 gi|147749188|gb|EDK56262.1| DNA helicase II [Burkholderia mallei FMH]
 gi|147753353|gb|EDK60418.1| DNA helicase II [Burkholderia mallei JHU]
 gi|148027817|gb|EDK85838.1| DNA helicase II [Burkholderia mallei 2002721280]
 gi|160699132|gb|EDP89102.1| DNA helicase II [Burkholderia mallei ATCC 10399]
 gi|238523865|gb|EEP87301.1| DNA helicase II [Burkholderia mallei GB8 horse 4]
 gi|243062656|gb|EES44842.1| DNA helicase II [Burkholderia mallei PRL-20]
          Length = 787

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLAAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|126441559|ref|YP_001058711.1| DNA helicase II [Burkholderia pseudomallei 668]
 gi|126221052|gb|ABN84558.1| DNA helicase II [Burkholderia pseudomallei 668]
          Length = 787

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|306831079|ref|ZP_07464240.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426645|gb|EFM29756.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 1210

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R++  +L       L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+                   +   ++  +  ++ L   L       + T+ AF
Sbjct: 89  ERIEKKIS-------------------QALQETTDNDLKNYLNEQLLGLQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ Q+     I+  F I  D+ +   L  E      +  M  N+ EL +        
Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTDKSEQDILKNEVFFDLFSDYMTGNDAELFRQLVR--NF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           S +    T    I+      K+  F  +    +K + +   
Sbjct: 188 SGNRKDSTAFRGIV-----YKIYDFSQATDNPQKWLAEVFL 223


>gi|291531717|emb|CBK97302.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Eubacterium siraeum
           70/3]
          Length = 1235

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 32/225 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKA 73
           +  T ++    +     A VSA AGSGKT +L QRV+RL+     N  PS ++ +T T  
Sbjct: 1   MKYTDAQIKAINQGRNPAIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTVK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R                   +  +  ++ N++  S     L          ++
Sbjct: 61  AADELKAR-------------------LDALMRQRINEAVSSADVRFLRNQRMRLRKARI 101

Query: 134 QTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            TI +FC +++++    A+ I++ F++ DE     L  +     L     + ++  +   
Sbjct: 102 STISSFCISLLRENIDLADNISAGFSVIDETAGGALKNDVLSDVLEDFYANGDKADRDVI 161

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            E     +D  +  +I         L +     ++    K +++S
Sbjct: 162 VENYVAKDDRRLRDII---------LTVHEKAINHTEPEKWLDRS 197


>gi|153009094|ref|YP_001370309.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188]
 gi|151560982|gb|ABS14480.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188]
          Length = 864

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +     EQ  A         V A AG+GKT +L  R+  +L    A+PS +L +T T 
Sbjct: 43  DYLKGLNPEQRQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILTTGLAYPSQILAVTFTN 102

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 103 KAAREMKERIGHLVGGAVE-------------------------------------GMPW 125

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++    AN+TS F I D +   +LI++     + +  LD+     + F
Sbjct: 126 LGTFHSIGVKLLRRHAELANLTSDFTILDTDDVIRLIKQ----LIQAEGLDDKRWPARTF 181

Query: 193 YEILEISNDEDI 204
             +++   ++  
Sbjct: 182 ANMIDGWKNKGF 193


>gi|170732770|ref|YP_001764717.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
 gi|169816012|gb|ACA90595.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
          Length = 787

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|313884107|ref|ZP_07817873.1| ATP-dependent nuclease subunit A [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620554|gb|EFR31977.1| ATP-dependent nuclease subunit A [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 1321

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 101/224 (45%), Gaps = 31/224 (13%)

Query: 21  KSEQLLASDPTRS-AWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
             EQ  A     S   V+A+AGSGKT +L++R++ +L+         L +T T+AAA EM
Sbjct: 14  NDEQWEAIHQDGSNILVAASAGSGKTAVLIERIMTKLIYQGYSIEDFLVVTFTEAAAREM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +    + + + +  +             ++K   LL           ++T+H+
Sbjct: 74  KERMSARLKTAVNETLDPVEQQ------------GLTKQNQLLSQA-------NIRTLHS 114

Query: 139 FCEAIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEEL----KKAFY 193
           FC  +++ F    +  ++F  + DE +   L +EA ++ +  IM+ N   L    ++ + 
Sbjct: 115 FCLRVVETFYYLTDFEANFQLVTDETRLLLLYQEAWQNLIEKIMVPNGSVLPNLSQEDYL 174

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           ++++I  +   +  + D +     L +  F  +    +  ++++
Sbjct: 175 KLVKIHGNSRSDQNLFDRV-----LTIYRFAMAQKDPQSWLDQA 213


>gi|125975357|ref|YP_001039267.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC
           27405]
 gi|256005497|ref|ZP_05430459.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360]
 gi|281419317|ref|ZP_06250332.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20]
 gi|125715582|gb|ABN54074.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC
           27405]
 gi|255990552|gb|EEU00672.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360]
 gi|281406937|gb|EFB37200.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20]
 gi|316939472|gb|ADU73506.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 1313]
          Length = 741

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 70/191 (36%), Gaps = 44/191 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL+     EQ  A         V A AGSGKT +L  R+  L+   N HP+++L +T T
Sbjct: 1   MDLLKDLNKEQREAVLHVDGPLLVLAGAGSGKTKVLTHRIAYLIKEKNVHPASILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++   S                                        +
Sbjct: 61  NKAAREMRERIDRLVEDVS--------------------------------------DSI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+ C  I+++   + +   +F I D        +   K  L  + L +     K+
Sbjct: 83  WVSTFHSMCVRILRRDIEKIDYDKNFVIFDYADQ----QNVVKDCLKELNLSDKNFPPKS 138

Query: 192 FYEILEISNDE 202
             E++  + DE
Sbjct: 139 ILEMIGRAKDE 149


>gi|160942246|ref|ZP_02089555.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434803|gb|EDP12570.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC
           BAA-613]
          Length = 780

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 41/163 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           D ++  + E +L ++      + A AGSGKT +L  RV  L+     +P  +L +T T  
Sbjct: 5   DTLNPMQKEAVLQTE--GPLLILAGAGSGKTRVLTHRVAYLIEEKQVNPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   +                                        + V
Sbjct: 63  AAGEMRERVDQLVGFGAE--------------------------------------SIWV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C  I+++       T++F+I D +  K L+++  K+ 
Sbjct: 85  STFHSTCVRILRRHIEYLGYTTNFSIYDSDDQKTLMKQVFKAM 127


>gi|76811011|ref|YP_333248.1| DNA helicase II [Burkholderia pseudomallei 1710b]
 gi|126453724|ref|YP_001065963.1| DNA helicase II [Burkholderia pseudomallei 1106a]
 gi|134282378|ref|ZP_01769083.1| DNA helicase II [Burkholderia pseudomallei 305]
 gi|167846029|ref|ZP_02471537.1| DNA helicase II [Burkholderia pseudomallei B7210]
 gi|167903003|ref|ZP_02490208.1| DNA helicase II [Burkholderia pseudomallei NCTC 13177]
 gi|167911242|ref|ZP_02498333.1| DNA helicase II [Burkholderia pseudomallei 112]
 gi|217423664|ref|ZP_03455165.1| DNA helicase II [Burkholderia pseudomallei 576]
 gi|226192893|ref|ZP_03788505.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9]
 gi|242316612|ref|ZP_04815628.1| DNA helicase II [Burkholderia pseudomallei 1106b]
 gi|254180038|ref|ZP_04886637.1| DNA helicase II [Burkholderia pseudomallei 1655]
 gi|254188552|ref|ZP_04895063.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237]
 gi|254261076|ref|ZP_04952130.1| DNA helicase II [Burkholderia pseudomallei 1710a]
 gi|76580464|gb|ABA49939.1| DNA helicase II [Burkholderia pseudomallei 1710b]
 gi|126227366|gb|ABN90906.1| DNA helicase II [Burkholderia pseudomallei 1106a]
 gi|134246416|gb|EBA46505.1| DNA helicase II [Burkholderia pseudomallei 305]
 gi|157936231|gb|EDO91901.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237]
 gi|184210578|gb|EDU07621.1| DNA helicase II [Burkholderia pseudomallei 1655]
 gi|217393522|gb|EEC33543.1| DNA helicase II [Burkholderia pseudomallei 576]
 gi|225934983|gb|EEH30958.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9]
 gi|242139851|gb|EES26253.1| DNA helicase II [Burkholderia pseudomallei 1106b]
 gi|254219765|gb|EET09149.1| DNA helicase II [Burkholderia pseudomallei 1710a]
          Length = 787

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|40063254|gb|AAR38081.1| DNA helicase II [uncultured marine bacterium 577]
          Length = 749

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L+S   +EQL A     +SA V A AGSGKT +L  R+  L+ +    P ++L +T T  
Sbjct: 4   LLSSLNNEQLKAVTLQDQSALVLAGAGSGKTRVLTTRIAYLIQSRQVSPHSILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++                                           G+ V
Sbjct: 64  AAKEMLMRVSAMLPI--------------------------------------NTQGMWV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D      +I    K  L  I  D+ +   +   
Sbjct: 86  GTFHGLCHRMLRAHYQDAGLPQAFQILDSADQLAVI----KRVLKDINADSEKFPPRQVQ 141

Query: 194 EILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
             +  + D  I     +   +  R   +    +     +  +++
Sbjct: 142 WFINNAKDGGIRGSQVEASDDFTRKMAEFYLVYEQQCNKEGVVD 185


>gi|254252587|ref|ZP_04945905.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
 gi|124895196|gb|EAY69076.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
          Length = 786

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + ++ +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKTLNVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|293400338|ref|ZP_06644484.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306738|gb|EFE47981.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 1081

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 31/204 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           + +    +        ++  VSA+AGSGKT +L+ R++ L++ +  P   +L +T T+AA
Sbjct: 1   MPNWNPQQLKAIQTKDKNIMVSASAGSGKTTVLIARLMDLVVKDRVPIDAILAMTFTEAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R               L+A + K   +  +  +    R  +   L +     + 
Sbjct: 61  ASEMKKR---------------LAASLQKAYEETKDPEE----RAYITRQLTSIQTAHIS 101

Query: 135 TIHAFCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           TIH+FC +I+Q++     + +     I D         EA    L     +   +  K F
Sbjct: 102 TIHSFCLSILQEYYYMIGLDATRITNIMDNGTMVLYQGEA----LEEAFQNQYAKQDKVF 157

Query: 193 YEI-----LEISNDEDIETLISDI 211
            ++         NDE +  LI+ +
Sbjct: 158 IDLCAMFSSRSENDEALRKLITSL 181


>gi|297158179|gb|ADI07891.1| ATP-dependent DNA helicase II [Streptomyces bingchenggensis BCW-1]
          Length = 829

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            + ++           + A AGSGKT +L  R+  LL     HP  +L +T T  AA EM
Sbjct: 72  NEQQRGAVVHTGSPLLIVAGAGSGKTRVLTHRIAYLLGARGVHPGQILAITFTNKAAGEM 131

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV E++   +                                        + V T H+
Sbjct: 132 KERVEELVGPRA--------------------------------------NAMWVSTFHS 153

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 154 ACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 191


>gi|258542141|ref|YP_003187574.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256633219|dbj|BAH99194.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256636278|dbj|BAI02247.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03]
 gi|256639331|dbj|BAI05293.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07]
 gi|256642387|dbj|BAI08342.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22]
 gi|256645442|dbj|BAI11390.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26]
 gi|256648495|dbj|BAI14436.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32]
 gi|256651548|dbj|BAI17482.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654539|dbj|BAI20466.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12]
          Length = 743

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 44/192 (22%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           + +++   EQ  A + T     V A AG+GKT +L  R   +LL   A P  +L +T T 
Sbjct: 22  NYLARLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLTGRAKPWQILTVTFTN 81

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++ + +                                       GL 
Sbjct: 82  KAAREMRERIGLLLGSPAE--------------------------------------GLW 103

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  ++++      +T  F I D +   +L+++     +A   +D         
Sbjct: 104 LGTFHALCARMLRRHAEYVGLTQSFTILDTDDQLRLLKQ----VMAPWQIDIKRWPAPGL 159

Query: 193 YEILEISNDEDI 204
             +++   D  +
Sbjct: 160 LGVIQRWKDRGL 171


>gi|239929399|ref|ZP_04686352.1| ATP-dependent DNA helicase II [Streptomyces ghanaensis ATCC 14672]
 gi|291437725|ref|ZP_06577115.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340620|gb|EFE67576.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 835

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 41/171 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65
             + +  ++ ++    ++           + A AGSGKT +L  R+  LL     HP  +
Sbjct: 63  ALDSAALLEGLNDN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLAERGVHPGQI 120

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  RV +++   +                                   
Sbjct: 121 LAITFTNKAAGEMKERVEQLVGPRA----------------------------------- 145

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                + V T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 146 ---NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193


>gi|254788455|ref|YP_003075884.1| DNA-dependent helicase II [Teredinibacter turnerae T7901]
 gi|237683747|gb|ACR11011.1| DNA helicase II [Teredinibacter turnerae T7901]
          Length = 728

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 40/196 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           S  +  ++  + E + A  P  +  V A AGSGKT +LV R+  L+      P  ++ +T
Sbjct: 4   SPLVKDLNSAQREAVAA--PLGNQLVLAGAGSGKTRVLVHRIAWLMEQQSVSPHQVMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  +I                                 L    + +  
Sbjct: 62  FTNKAAREMRERLTHLIGD------------------------------RLGPRGVHS-- 89

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            + V T H     +++    EA ++ +F I D +   +LI+   +    ++ LD++    
Sbjct: 90  -MWVGTFHGIAHRLLKAHWQEAGLSQNFQIMDSDDQLRLIKRIYQ----TLALDDSRWPV 144

Query: 190 KAFYEILEISNDEDIE 205
           K     +    DE + 
Sbjct: 145 KQAQWYINNQKDEGLR 160


>gi|94988280|ref|YP_596381.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429]
 gi|251764560|sp|Q1JMH5|ADDA_STRPC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|94541788|gb|ABF31837.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429]
          Length = 1222

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++ G   + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLGQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|291537470|emb|CBL10582.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis M50/1]
          Length = 747

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 79/225 (35%), Gaps = 51/225 (22%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +Q  A         + A AGSGKT +L  R   L+     +P  ++ +T T  AA E
Sbjct: 7   LNEQQREAVYQTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITFTNKAAGE 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+   S                                        + V T H
Sbjct: 67  MRERIDKIVGFGSE--------------------------------------SIWVSTFH 88

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           + C  I+++        ++F I D + SK L+++  K     + +D     +K+F   + 
Sbjct: 89  SSCVRILRRHIDRIGFDTNFTIYDADDSKSLMKDICKR----LEIDTKIYKEKSFLAAIS 144

Query: 198 ISNDEDI-------ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            + DE I         L S   + R   ++   +   L +   ++
Sbjct: 145 SAKDELITPTELMQRALTSSDYAKRKQAEVYREYQEALHKNNALD 189


>gi|86131067|ref|ZP_01049666.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
 gi|85818478|gb|EAQ39638.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
          Length = 1045

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 12/209 (5%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLE 84
           ++      ++A+AGSGKT+ LV++ +  LL +  P+    LL +T T  A AEM +RVLE
Sbjct: 2   TEKNTFIVLNASAGSGKTYSLVKQYITTLLKSKDPNKFRHLLAITFTNKAVAEMKNRVLE 61

Query: 85  IITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + A            +  +      P    + K++ +L  IL       + TI      
Sbjct: 62  TLKAIGDYKQGDKPDMLDDLASASNLPVDEVVHKSKEILNRILHNYAAFDIVTIDTLTHR 121

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           I++ F  + NI+S F +      K L  +A  + +A + +D+        + + +  +D+
Sbjct: 122 IIRTFAKDLNISSSFEV--SLDQKTLSAQAVDALVAKVGVDDTITKVLVDFALEKADDDK 179

Query: 203 DIE---TL--ISDIISNRTALKLIFFFFS 226
             +    L  I+ ++ N   LK +    S
Sbjct: 180 SWDISRDLLEIASLLHNENDLKALELLKS 208


>gi|255692465|ref|ZP_05416140.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565]
 gi|260621733|gb|EEX44604.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565]
          Length = 789

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 58/164 (35%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I+ I +    Q  A       + V A AGSGKT +L  ++  LL    +P  +L LT T 
Sbjct: 3   INYIKELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+   + A                           +AR+L            
Sbjct: 63  KAAREMKERIARQVGA--------------------------ERARYL-----------W 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++        TS F I D   SK L+    K  
Sbjct: 86  MGTFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLLRSIIKEM 129


>gi|240146225|ref|ZP_04744826.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
 gi|257201636|gb|EEU99920.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
          Length = 755

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 51/232 (21%)

Query: 13  TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           T+ +      +Q  A         + A AGSGKT +L  R   L+     +P  ++ +T 
Sbjct: 8   TMSIYDTLNEQQREAVYQTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITF 67

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ +I+   S                                        
Sbjct: 68  TNKAAGEMRERIDKIVGFGSE--------------------------------------S 89

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++        ++F I D + SK L+++  K     + +D     +K
Sbjct: 90  IWVSTFHSSCVRILRRHIDRIGFDTNFTIYDADDSKSLMKDICKR----LEIDTKIYKEK 145

Query: 191 AFYEILEISNDEDI-------ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +F   +  + DE I         L S   + R   ++   +   L +   ++
Sbjct: 146 SFLAAISSAKDELITPTELMRRALTSSDYAKRKQAEVYREYQEALHKNNALD 197


>gi|302670353|ref|YP_003830313.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
 gi|302394826|gb|ADL33731.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
          Length = 847

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L  RV  L+   N +P  ++ +T T  AA EM
Sbjct: 8   NSQQKKAVLQTDGPVLILAGAGSGKTRVLTHRVAYLIDECNVNPWNIMAITFTNKAAGEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   +                                        + V T H+
Sbjct: 68  RERVDKIVGFGAE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            C  I++++  +   +++F I D + SK L+++  K
Sbjct: 90  SCVRILRRYADKLGFSNNFTIYDTDDSKTLMKDICK 125


>gi|251764599|sp|Q1JCJ8|ADDA_STRPB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
          Length = 1222

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++ G   + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLGQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|239814543|ref|YP_002943453.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239801120|gb|ACS18187.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 809

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 45/223 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +    ++   + P  +A + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 24  LANLNPEQRAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKA 83

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++                                           G+ + 
Sbjct: 84  AKEMMTRLTAMLPV--------------------------------------NVRGMWIG 105

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H  C   ++     AN+ S F I D +        A K  +    +D+     K    
Sbjct: 106 TFHGLCNRFLRAHWKLANLPSTFQILDTQDQLS----AIKRLMKQFNVDDERFPAKQTQW 161

Query: 195 ILEISNDEDIETLISDI--ISNRTALKLIFFFFSYLWRRKIIE 235
            +  + ++ +     +I    +R  ++L   +     R  +++
Sbjct: 162 FIAGAKEDGLRPKDVEIRTEDDRKKVELYQLYEEQCQREGVVD 204


>gi|53719591|ref|YP_108577.1| putative helicase [Burkholderia pseudomallei K96243]
 gi|52210005|emb|CAH35978.1| putative helicase [Burkholderia pseudomallei K96243]
          Length = 787

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|300021793|ref|YP_003754404.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523614|gb|ADJ22083.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 818

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++    ++           V A AG+GKT +L  R+  +L    A+PS +L +T T
Sbjct: 62  YLDGLN--PEQREAVETTEGPLLVLAGAGTGKTRVLTTRIAHILATGKAYPSQILAVTFT 119

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +I                                          G  
Sbjct: 120 NKAAREMRDRIGGLIGGTLE-------------------------------------GMS 142

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+    I+++      + S F I D++   +L+++     + +  LD +    + 
Sbjct: 143 WLGTFHSIGVKILRRHAELVGLKSGFTILDDDDQVRLLKQ----VIEAARLDKDRWPARQ 198

Query: 192 FYEILEISNDEDI 204
              +++   +  +
Sbjct: 199 LAGLIDSWKNRGL 211


>gi|83720350|ref|YP_443147.1| DNA helicase II [Burkholderia thailandensis E264]
 gi|167582159|ref|ZP_02375033.1| DNA helicase II [Burkholderia thailandensis TXDOH]
 gi|167620316|ref|ZP_02388947.1| DNA helicase II [Burkholderia thailandensis Bt4]
 gi|257139377|ref|ZP_05587639.1| DNA helicase II [Burkholderia thailandensis E264]
 gi|83654175|gb|ABC38238.1| DNA helicase II [Burkholderia thailandensis E264]
          Length = 787

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHFRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVD 185


>gi|317472670|ref|ZP_07931985.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA]
 gi|316899847|gb|EFV21846.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA]
          Length = 735

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 44/188 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D +++ + E +  ++      + A AGSGKT +L  R+  L+    +P  ++ +T T  A
Sbjct: 5   DTLNEQQREAVFCTE--GPLLLLAGAGSGKTRVLTHRIAYLIEQGVNPYHIMAITFTNKA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++ + +                                        + V 
Sbjct: 63  AREMRERVDALVGSGAEH--------------------------------------IWVS 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++   +    + F I D +  K LI    K       +D     ++A   
Sbjct: 85  TFHSTCVRILRRHIDKLGYDNSFTIYDSDDQKSLIRGICKQF----KVDTKSLPERAVMN 140

Query: 195 ILEISNDE 202
            +  + DE
Sbjct: 141 AISSAKDE 148


>gi|167748917|ref|ZP_02421044.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662]
 gi|167651539|gb|EDR95668.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662]
          Length = 735

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 44/188 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D +++ + E +  ++      + A AGSGKT +L  R+  L+    +P  ++ +T T  A
Sbjct: 5   DTLNEQQREAVFCTE--GPLLLLAGAGSGKTRVLTHRIAYLIEQGVNPYHIMAITFTNKA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++ + +                                        + V 
Sbjct: 63  AREMRERVDALVGSGAEH--------------------------------------IWVS 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++   +    + F I D +  K LI    K       +D     ++A   
Sbjct: 85  TFHSTCVRILRRHIDKLGYDNSFTIYDSDDQKSLIRGICKQF----KVDTKSLPERAVMN 140

Query: 195 ILEISNDE 202
            +  + DE
Sbjct: 141 AISSAKDE 148


>gi|168183573|ref|ZP_02618237.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
 gi|237796712|ref|YP_002864264.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str.
           657]
 gi|182673320|gb|EDT85281.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
 gi|229262342|gb|ACQ53375.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str.
           657]
          Length = 738

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL ++   EQ   A+       + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKNKLNKEQYEAATTIDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                           G+
Sbjct: 61  NKAAGEMKERIKALVGDVVE--------------------------------------GM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +F I D    K L+++  +  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127


>gi|167738899|ref|ZP_02411673.1| DNA helicase II [Burkholderia pseudomallei 14]
          Length = 370

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|114330786|ref|YP_747008.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114307800|gb|ABI59043.1| ATP-dependent DNA helicase UvrD [Nitrosomonas eutropha C91]
          Length = 748

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 44/193 (22%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQL A   P +SA + A AGSGKT +L  R+  LL +    P  LL +T T  
Sbjct: 4   LLTDLNPEQLEAVTWPHQSALILAGAGSGKTRVLTTRIAYLLQSGLTQPQNLLAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 64  AAREMVARISTMLPI--------------------------------------NIRGMWI 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D      +I    K  L    LD      +   
Sbjct: 86  GTFHGLCHRMLRAHYEDAGLPQAFQILDMADQLAVI----KRILKERSLDEKVLAPRQLQ 141

Query: 194 EILEISNDEDIET 206
             +  + +E +  
Sbjct: 142 WFINNAKEEGLRA 154


>gi|330837379|ref|YP_004412020.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329749282|gb|AEC02638.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 1218

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 33/185 (17%)

Query: 15  DLISQTKSE----QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           D++++T       Q  A D   +  VSA AGSGKT +L  R +RLL+   AH   +L LT
Sbjct: 20  DVLARTGRRLDDNQRRAVDCDSNCVVSAGAGSGKTTVLTYRFIRLLIEGKAHADQILTLT 79

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AAAEM  R+  ++++                               L+ + L    
Sbjct: 80  FTRKAAAEMHERIHALVSSLRDDP--------------------------LMASELARFP 113

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
             ++ T+ +FC AI++   +   IT  F+I D+  ++        S L +   D    L 
Sbjct: 114 QAQISTLDSFCSAIVRSDCIRYGITGDFSIDDDATTR--FASVVASRLLADAQDEGARLL 171

Query: 190 KAFYE 194
             FY 
Sbjct: 172 SVFYS 176


>gi|212696136|ref|ZP_03304264.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676765|gb|EEB36372.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 730

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +DL +    ++           V A AGSGKT +L   +  L+     +P+ +L +T T
Sbjct: 1   MMDLSNLNDKQKEAVLHEKGPLLVVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                       E    L
Sbjct: 61  NKAANEMKERISNLLN--------------------------------------EDVSHL 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+ C  I++    +    ++F I D    K L++E  K  
Sbjct: 83  WIGTFHSICARILRMNINKIGYDNNFTIYDTNDQKTLVKEIIKDL 127


>gi|315608146|ref|ZP_07883138.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574]
 gi|315250115|gb|EFU30112.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574]
          Length = 819

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 38/180 (21%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            +DL+S+    Q  A +     + V A AGSGKT +L  ++  LL     P  +L LT T
Sbjct: 1   MVDLLSELNDSQREAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLQRGVRPYNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++     L                                      L
Sbjct: 61  NKAATEMKARIGKLVGERDAL-------------------------------------AL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           ++ T H+    I++         S+F I DE  S+ LI+   K   A     + ++ K A
Sbjct: 84  RMGTFHSVFSRILRVEAAHIGYNSNFTIYDESDSRSLIKTIVKELAAGNEKMDEKQYKSA 143


>gi|119503547|ref|ZP_01625630.1| DNA helicase II [marine gamma proteobacterium HTCC2080]
 gi|119460609|gb|EAW41701.1| DNA helicase II [marine gamma proteobacterium HTCC2080]
          Length = 721

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 45/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ +  ++  + + + A   + +  V A AGSGKT +LV R+  L+      P  LL 
Sbjct: 2   DVSDILTDLNAAQRDAVAAE--SGNLLVLAGAGSGKTRVLVHRMAWLIRAEGVSPHALLS 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++   +                                     
Sbjct: 60  VTFTNKAAREMRSRIESMLDVSTQ------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ V T H     +++Q   EA +  +F I D +   +L++   +     + LD  + 
Sbjct: 84  --GMWVGTFHGLAHRLLKQHWQEAQLPQNFQILDSDDQLRLVKRVCRD----LNLDEAQW 137

Query: 188 LKKAFYEILEISNDEDIET 206
             +     +    DE +  
Sbjct: 138 PPRQAQWYINGQKDEGLRA 156


>gi|171319519|ref|ZP_02908620.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
 gi|171095259|gb|EDT40249.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
          Length = 787

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|170702107|ref|ZP_02893019.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
 gi|170132982|gb|EDT01398.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
          Length = 787

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|326405601|gb|ADZ62672.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis
           CV56]
          Length = 1203

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 35/230 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +        ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+
Sbjct: 4   VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   +                     +   SD ++AR L    L+      + T+
Sbjct: 64  ELRMRLERDLKK------------------ARQESSDENQARRL-TLALQNLSNADIGTM 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNN------EELK 189
            +F + + +      NI  +F I  D+ +S  + +E  +  + S + +++      E+ +
Sbjct: 105 DSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSEDDGLNISKEKFE 164

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           +      +  N    + ++  I           F  +     K +E    
Sbjct: 165 ELIKNFSKDRNIAGFQKVVYTI---------YRFASATENPIKWLENQFL 205


>gi|209364296|ref|YP_001425453.2| DNA-dependent helicase II [Coxiella burnetii Dugway 5J108-111]
 gi|207082229|gb|ABS78395.2| DNA helicase II [Coxiella burnetii Dugway 5J108-111]
          Length = 723

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 45/199 (22%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           S  E+   ++ ++  + E    + P     V A AGSGKT +L  R+  L+   N  P +
Sbjct: 2   SGMENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYS 59

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++                                      
Sbjct: 60  ILAVTFTNKAAYEMRGRIESMLGMP----------------------------------- 84

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
               G + V T H     +++    +A +   F I D +   +LI   ++    ++ L+ 
Sbjct: 85  ---MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEE 137

Query: 185 NEELKKAFYEILEISNDED 203
           ++   K     +    +E 
Sbjct: 138 SQWPPKQTQWFINKQKEEG 156


>gi|331085909|ref|ZP_08334992.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406832|gb|EGG86337.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 741

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 8   NAEQREAVFHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAAGEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   S                                        + V T H+
Sbjct: 68  RERVDDIVGFGSE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            C  I+++        ++F I D +  K L+++  K
Sbjct: 90  TCVRILRRHIDRLGYDNNFTIYDSDDQKTLMKDVCK 125


>gi|294507833|ref|YP_003571891.1| ATP-dependent exoDNAse [Salinibacter ruber M8]
 gi|294344161|emb|CBH24939.1| ATP-dependent exoDNAse [Salinibacter ruber M8]
          Length = 1141

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 20/185 (10%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           L A +P  + +V A AGSGKT  LV R++ L+ +      L  +T T+ AA EMS R  E
Sbjct: 31  LSAFEPDTNFFVRAAAGSGKTTALVARMVALVRSGVPVEDLTAITFTRKAAGEMSKRFYE 90

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                          E+ + Q   P +      R  +   L       + TIHAFC  ++
Sbjct: 91  ---------------ELRRAQTALPAEGP---QRRRVTAALRDAQQAFIGTIHAFCARLL 132

Query: 145 QQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN-DE 202
           ++ P+ A++   F    ++ + ++L + A +  L ++  D    ++      LE  + D 
Sbjct: 133 RERPIAADLPPGFVAGLEDREERELRDRAWQDYLQTVRADRPARMEALTSLGLEPEDLDA 192

Query: 203 DIETL 207
             E L
Sbjct: 193 YFERL 197


>gi|170782918|ref|YP_001711252.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157488|emb|CAQ02679.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 815

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 41/192 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  + E ++   P     V A AGSGKT +L  R+  L+ +  A PS +L +T T
Sbjct: 34  LLEGLNPEQREAVVYRGPA--LLVVAGAGSGKTRVLTHRIASLIESREAWPSQILAITFT 91

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++   S                                       G+
Sbjct: 92  NKAAAEMRERVESLLGQASE--------------------------------------GM 113

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++       T +F I D   S+ LI+   K   A  +      +   
Sbjct: 114 WISTFHSACVRILRREAEAFGFTQNFTIYDSADSRVLIKRIIKQLDADTLGFTVSSVSGR 173

Query: 192 FYEILEISNDED 203
             ++    +D D
Sbjct: 174 ISKLKNELSDAD 185


>gi|22300001|ref|NP_683248.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1]
 gi|22296186|dbj|BAC10010.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1]
          Length = 773

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 17/171 (9%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++     Q  A +  +    V A AGSGKT  L  R+  L+  +   P  +L +T T 
Sbjct: 4   DFLTGLNPSQRQAVEHYSGPLLVVAGAGSGKTRTLTYRIAHLIRHHQVAPEHILAVTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  + +       + ++ ++        + ++  + R  +      P  L 
Sbjct: 64  KAAREMKERIETLFS-------QEMAQQLYGRDWLDLSPAEQRRVRSRVYHTYTQP--LW 114

Query: 133 VQTIHAFCEAIMQ------QFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           + T H+ C  +++      Q P     T HF I DE   + LI++     L
Sbjct: 115 IGTFHSLCARLLRLEIEAYQHPQGYRWTRHFTIFDESDVQSLIKQIVTGEL 165


>gi|325662111|ref|ZP_08150729.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471560|gb|EGC74780.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 741

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 8   NAEQREAVFHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAAGEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   S                                        + V T H+
Sbjct: 68  RERVDDIVGFGSE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            C  I+++        ++F I D +  K L+++  K
Sbjct: 90  TCVRILRRHIDRLGYDNNFTIYDSDDQKTLMKDVCK 125


>gi|169237545|ref|YP_001690749.1| putative helicase [Halobacterium salinarum R1]
 gi|167728772|emb|CAP15640.1| putative helicase [Halobacterium salinarum R1]
          Length = 1211

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 31/222 (13%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAA 76
           Q   EQ  A    R+  ++A AG+GKT  L +R + +L  N    P  ++ +T T+ AAA
Sbjct: 9   QLTEEQEDALVQGRNVAITAGAGTGKTTTLTERYVTILAENPSLTPENIITITFTRKAAA 68

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E++ RV E +                     +    D  +A +    +L+      V TI
Sbjct: 69  ELTERVREEVYD-------------------RLEAVDSPEAYNRWRNVLDDLEDGYVHTI 109

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAFC  ++++  +EA +   F + DE+ +  L  E     L     D++  L      + 
Sbjct: 110 HAFCARLLRERAVEAPVPLGFDVLDEDGAATLQREVVTEFLERNQDDDDVAL------LA 163

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           ++   + +  +++ ++  R   + +       WR   ++  +
Sbjct: 164 QLWGRDQLVDVLAGLLDERPQSESVL----EAWRDADVDDYV 201


>gi|71903240|ref|YP_280043.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180]
 gi|123640147|sp|Q48UB8|ADDA_STRPM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|71802335|gb|AAX71688.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180]
          Length = 1222

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++ G   + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLGQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|318058788|ref|ZP_07977511.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actG]
 gi|318075472|ref|ZP_07982804.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actF]
          Length = 829

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +            + A AGSGKT +L  R+  LL     HP  +L +T T  A
Sbjct: 71  LTGLNPEQAAAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNKA 130

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++   +                                      G + V 
Sbjct: 131 AGEMKERVEQLVGPRA--------------------------------------GAMWVS 152

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 153 TFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 194


>gi|256785725|ref|ZP_05524156.1| ATP-dependent DNA helicase II [Streptomyces lividans TK24]
 gi|289769617|ref|ZP_06528995.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24]
 gi|289699816|gb|EFD67245.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24]
          Length = 831

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 41/171 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65
             + +  ++ +++   ++           + A AGSGKT +L  R+  LL   N HP  +
Sbjct: 63  ALDAAALLEGLNEN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQI 120

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  RV +++   +                                   
Sbjct: 121 LAITFTNKAAGEMKERVEQLVGPRA----------------------------------- 145

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                + V T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 146 ---NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193


>gi|302519556|ref|ZP_07271898.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
 gi|302428451|gb|EFL00267.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
          Length = 829

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +            + A AGSGKT +L  R+  LL     HP  +L +T T  A
Sbjct: 71  LTGLNPEQAAAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNKA 130

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++   +                                      G + V 
Sbjct: 131 AGEMKERVEQLVGPRA--------------------------------------GAMWVS 152

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 153 TFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 194


>gi|226938999|ref|YP_002794070.1| UvrD [Laribacter hongkongensis HLHK9]
 gi|226713923|gb|ACO73061.1| UvrD [Laribacter hongkongensis HLHK9]
          Length = 710

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           D ++     QL A      A V A AGSGKT +L  R+  LL    A P+++L +T T  
Sbjct: 4   DFLAGLNPAQLAAVTTRSHALVLAGAGSGKTRVLTSRIAWLLREGLASPASVLAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++                                         P  + +
Sbjct: 64  AAREMQTRVGAMLPV--------------------------------------NPRMMWI 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H     +++    +A + + F I D +        A K  L ++ L ++    +   
Sbjct: 86  GTFHGLAHRLLRLHHRDAGLPATFTILDSQDQLA----AIKRLLKALNLSDDTYPPRQLM 141

Query: 194 EILEISNDEDIE 205
           + +    ++ + 
Sbjct: 142 QFINRHKEQGLR 153


>gi|21223175|ref|NP_628954.1| ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)]
 gi|8218198|emb|CAB92660.1| putative ATP-dependent DNA helicase II [Streptomyces coelicolor
           A3(2)]
          Length = 831

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 41/171 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65
             + +  ++ +++   ++           + A AGSGKT +L  R+  LL   N HP  +
Sbjct: 63  ALDAAALLEGLNEN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQI 120

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  RV +++   +                                   
Sbjct: 121 LAITFTNKAAGEMKERVEQLVGPRA----------------------------------- 145

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                + V T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 146 ---NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193


>gi|319655031|ref|ZP_08009102.1| PcrA protein [Bacillus sp. 2_A_57_CT2]
 gi|317393298|gb|EFV74065.1| PcrA protein [Bacillus sp. 2_A_57_CT2]
          Length = 743

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 45/192 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + ++ ++    +Q           + A AGSGKT +L  R+  L++    +P  +L +T 
Sbjct: 7   KLLNGLN--PQQQNAVKTTDGPLLIMAGAGSGKTRVLTHRIAYLMVEKGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMRDRIHNMMGGAA--------------------------------------DE 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + + T H+ C  I+++         +F I D    + +I    KS L    LD  +   +
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYNRNFTILDSTDQQSVI----KSILKDKNLDPKKFDPR 142

Query: 191 AFYEILEISNDE 202
           A    +  + +E
Sbjct: 143 AILGSISSAKNE 154


>gi|212219550|ref|YP_002306337.1| DNA-dependent helicase II [Coxiella burnetii CbuK_Q154]
 gi|212013812|gb|ACJ21192.1| DNA helicase II [Coxiella burnetii CbuK_Q154]
          Length = 723

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 45/199 (22%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           S  E+   ++ ++  + E    + P     V A AGSGKT +L  R+  L+   N  P +
Sbjct: 2   SGMENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYS 59

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++                                      
Sbjct: 60  ILAVTFTNKAAYEMRGRIESMLGMP----------------------------------- 84

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
               G + V T H     +++    +A +   F I D +   +LI   ++    ++ L+ 
Sbjct: 85  ---MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEE 137

Query: 185 NEELKKAFYEILEISNDED 203
           ++   K     +    +E 
Sbjct: 138 SQWPPKQTQWFINKQKEEG 156


>gi|83814136|ref|YP_445923.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83755530|gb|ABC43643.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 1114

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 20/185 (10%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           L A +P  + +V A AGSGKT  LV R++ L+ +      L  +T T+ AA EMS R  E
Sbjct: 4   LSAFEPDTNFFVRAAAGSGKTTALVARMVALVRSGVPVEDLTAITFTRKAAGEMSKRFYE 63

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                          E+ + Q   P +      R  +   L       + TIHAFC  ++
Sbjct: 64  ---------------ELRRAQTALPAEGP---QRRRVTAALRDAQQAFIGTIHAFCARLL 105

Query: 145 QQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN-DE 202
           ++ P+ A++   F    ++ + ++L + A +  L ++  D    ++      LE  + D 
Sbjct: 106 RERPIAADLPPGFVAGLEDREERELRDRAWQDYLQTVRADRPARMEALTSLGLEPEDLDA 165

Query: 203 DIETL 207
             E L
Sbjct: 166 YFERL 170


>gi|115351375|ref|YP_773214.1| UvrD/REP helicase [Burkholderia ambifaria AMMD]
 gi|115281363|gb|ABI86880.1| ATP-dependent DNA helicase UvrD [Burkholderia ambifaria AMMD]
          Length = 840

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 56  DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 115

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 116 KAAREMMARLSAMMPIDTR--------------------------------------GMW 137

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 138 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 193

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 194 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 238


>gi|291615299|ref|YP_003525456.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
 gi|291585411|gb|ADE13069.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
          Length = 722

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 44/193 (22%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+S    EQ  A + P RSA + A AGSGKT +L  R+  L+      P  +L +T T  
Sbjct: 5   LLSGLNPEQRAAVELPARSALILAGAGSGKTRVLTTRIAWLISTGQVSPHGILAVTFTNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 65  AAKEMVTRLSAMLPI--------------------------------------NTRGMWI 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    EAN+   F I D          A K  + ++ +D+ +   +   
Sbjct: 87  GTFHGLCNRMLRAHHREANLPQTFQILDSGDQLS----AIKRLMKAMNVDDEKYPPREMQ 142

Query: 194 EILEISNDEDIET 206
             +  S ++ +  
Sbjct: 143 NFISGSKEQGLRA 155


>gi|229826175|ref|ZP_04452244.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC
           49176]
 gi|229789045|gb|EEP25159.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC
           49176]
          Length = 768

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 43/192 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++           + A AGSGKT +L +R+  L+      P  +L LT T  A
Sbjct: 4   LDNLNPEQKKAVVHENGPLLILAGAGSGKTRVLTRRIAYLIKEYGVSPWNILALTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV E+I   +                                        + V 
Sbjct: 64  AREMRERVDELIEEGAE--------------------------------------NIWVS 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  ++++F  +      F I D + +K       K  L ++ +DN E  +K    
Sbjct: 86  TFHSACVKMLRRFIDKIGYDRSFNIYDTDDTKA----VVKQVLKALNIDNKEFPEKTCLN 141

Query: 195 ILEISNDEDIET 206
           ++  + ++ I+ 
Sbjct: 142 VISNAKNDFIDA 153


>gi|153814085|ref|ZP_01966753.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756]
 gi|317499894|ref|ZP_07958130.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087883|ref|ZP_08336808.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848481|gb|EDK25399.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756]
 gi|316898611|gb|EFV20646.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409578|gb|EGG89019.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 750

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K ++           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 8   NKPQKEAVFHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAEEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 68  RQRVDSLVGIGAE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I++++       + F I D +  K L++E  + T
Sbjct: 90  MCVRILRRYIDRLGYDNRFTIYDTDDQKTLMKEVCRKT 127


>gi|160900763|ref|YP_001566345.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
 gi|160366347|gb|ABX37960.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
          Length = 822

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 80/226 (35%), Gaps = 50/226 (22%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQL A   P   A + A AGSGKT +L  R+  LL    A P ++L +T T  
Sbjct: 21  LLANLNEEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSILAVTFTNK 80

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 81  AAKEMLARLSAMLPY--------------------------------------NVRGMWI 102

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A ++S F I D +        A K       +D+     K   
Sbjct: 103 GTFHGLCNRLLRAHHQAAKLSSTFQILDTQDQLS----AVKRLCKQFNVDDERFPPKQLQ 158

Query: 194 EILEISNDEDIETLISDIISN----RTALKLIFFFFSYLWRRKIIE 235
             +    +E +     D+++N    R  +++   +     R  +++
Sbjct: 159 YFIAGCKEEGMRP--GDVVANDPDTRKKVEIYQLYEEQCQRESVVD 202


>gi|330816643|ref|YP_004360348.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3]
 gi|327369036|gb|AEA60392.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3]
          Length = 789

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGFASPPTVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMLSRLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKASNIDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRMFVELYQAYDQQCQREGVVD 185


>gi|227487771|ref|ZP_03918087.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542414|ref|ZP_03972463.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227092273|gb|EEI27585.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181612|gb|EEI62584.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 735

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 51/222 (22%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+S    +Q  A         + A AGSGKT +L +R+  LL      P  +L +T T 
Sbjct: 5   DLVSDLNPQQRDAVLHDDSPLLIVAGAGSGKTAVLTRRIAHLLRFKGVQPWQILAITFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV+ +I   +                                        + 
Sbjct: 65  KAAKEMQERVIGLIGPEAQ--------------------------------------NMA 86

Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V T H+ C  I+++       + S+F I D + SK+L+++  K          + ++KK 
Sbjct: 87  VATFHSTCVRILRRNAQLVPGLNSNFTIYDSDDSKRLLQQIAKDM--------DLDIKKF 138

Query: 192 FYEIL--EISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
              +L  +IS  ++    + D +     +  ++ F+    RR
Sbjct: 139 SPRVLGNKISGWKNELIGVDDAVKEHKVIGQVYGFYQERLRR 180


>gi|186476348|ref|YP_001857818.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184192807|gb|ACC70772.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 790

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3   ELLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGFASPPTILGVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMSRLSALLPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  +  + +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTSDQLS----AIKRLMKGLNIDDEKYPPKNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPKDVDASDNFNRKFIELYEAYDQQCQREGVVD 185


>gi|212213503|ref|YP_002304439.1| DNA-dependent helicase II [Coxiella burnetii CbuG_Q212]
 gi|215919328|ref|NP_821025.2| DNA-dependent helicase II [Coxiella burnetii RSA 493]
 gi|206584213|gb|AAO91539.2| DNA helicase II [Coxiella burnetii RSA 493]
 gi|212011913|gb|ACJ19294.1| DNA helicase II [Coxiella burnetii CbuG_Q212]
          Length = 723

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 45/199 (22%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           S  E+   ++ ++  + E    + P     V A AGSGKT +L  R+  L+   N  P +
Sbjct: 2   SGMENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYS 59

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++                                      
Sbjct: 60  ILAVTFTNKAAYEMRGRIESMLGMP----------------------------------- 84

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
               G + V T H     +++    +A +   F I D +   +LI   ++    ++ L+ 
Sbjct: 85  ---MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEE 137

Query: 185 NEELKKAFYEILEISNDED 203
           ++   K     +    +E 
Sbjct: 138 SQWPPKQTQWFINKQKEEG 156


>gi|167563007|ref|ZP_02355923.1| DNA helicase II [Burkholderia oklahomensis EO147]
          Length = 786

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHHRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVD 185


>gi|207743840|ref|YP_002260232.1| dna helicase II protein (partial sequence n terminus) [Ralstonia
           solanacearum IPO1609]
 gi|206595240|emb|CAQ62167.1| probable dna helicase II protein (partial sequence n terminus)
           [Ralstonia solanacearum IPO1609]
          Length = 166

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 44/194 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P  SA + A AGSGKT +L  R+  L+ ++   PS +L +T T 
Sbjct: 3   DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSSRVSPSGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ R+  ++                                            + 
Sbjct: 63  KAAKEMTARLSAMLPI--------------------------------------NTRAMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D +        A K  L S+ +D+ +   K  
Sbjct: 85  IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKNV 140

Query: 193 YEILEISNDEDIET 206
              +  + ++ +  
Sbjct: 141 QYFINGAKEQGLRA 154


>gi|239832290|ref|ZP_04680619.1| DNA helicase II [Ochrobactrum intermedium LMG 3301]
 gi|239824557|gb|EEQ96125.1| DNA helicase II [Ochrobactrum intermedium LMG 3301]
          Length = 859

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +     EQ  A         V A AG+GKT +L  R+  +L    A+PS +L +T T 
Sbjct: 43  DYLKGLNPEQRQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILTTGLAYPSQILAVTFTN 102

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 103 KAAREMKERIGHLVGGAVE-------------------------------------GMPW 125

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++    AN+TS F I D +   +LI++     + +  LD+     + F
Sbjct: 126 LGTFHSIGVKLLRRHAELANLTSDFTILDTDDVIRLIKQ----LIQAEGLDDKRWPARTF 181

Query: 193 YEILEISNDEDI 204
             +++   ++  
Sbjct: 182 ANMIDGWKNKGF 193


>gi|167570197|ref|ZP_02363071.1| DNA helicase II [Burkholderia oklahomensis C6786]
          Length = 786

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHHRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVD 185


>gi|172060415|ref|YP_001808067.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
 gi|171992932|gb|ACB63851.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
          Length = 787

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|323143043|ref|ZP_08077748.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
 gi|322417184|gb|EFY07813.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
          Length = 688

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 41/166 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            ID ++  K ++   S P  +  V A AG+GKT +LV R+  LL +    P  +L +T T
Sbjct: 5   IIDPLN--KEQKEAVSAPLSNILVIAGAGTGKTRVLVSRIAWLLQVEMLLPREVLAVTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  I+                                        +  GL
Sbjct: 63  NKAAREMRERIELIMG--------------------------------------HSVDGL 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
              T H+F   I++ +  +A +   F + D +  KKLI+   K  L
Sbjct: 85  WANTFHSFSLRILRNYAKQAGLLPDFTVLDTDNQKKLIKRILKEEL 130


>gi|229825742|ref|ZP_04451811.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC
           49176]
 gi|229790305|gb|EEP26419.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC
           49176]
          Length = 1183

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 27/223 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ +  +      +  VSA AGSGKT +L++RV+  LL    P     LL +T T+ AA
Sbjct: 5   WTEEQLAVIKHRDDNMLVSAAAGSGKTAVLIERVMGRLLDERAPINIDELLVVTFTRDAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   I+       + L  E+ K      +   + K   LL           + T
Sbjct: 65  GEMKERIGAAIS-------KKLEEEVAKDANSDIS-LRLMKQYSLL-------SEAHMST 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I +FC+ ++ +   EA I       D+ +   + ++  +  L +     + +        
Sbjct: 110 IDSFCKKVVMENFKEAEIDPSVRTLDDTEGVIIRKKVLEELLETEYEIRHADFINFVEYF 169

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
               +D+ +E LI         L+L  F  S   +    ++ +
Sbjct: 170 ARGKSDKILEDLI---------LQLYRFSESLPDKESWFDREI 203


>gi|256827426|ref|YP_003151385.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
 gi|256583569|gb|ACU94703.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
          Length = 841

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +DL +    +            V A AGSGKT +L  R+  ++      P  +L +T T
Sbjct: 2   ALDLETLNPEQHEAVMTTEGPLLVLAGAGSGKTRVLTYRIAHMIEDLGVAPWEILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  ++   +                                       G+
Sbjct: 62  NKAAAEMRERLGALVGPAAR--------------------------------------GM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I++        T +F I  ++ SK+LI++     
Sbjct: 84  WVSTFHSMCVRILRANAEVIGFTKNFTIYADDDSKRLIKDIMAQL 128


>gi|197105764|ref|YP_002131141.1| DNA helicase II [Phenylobacterium zucineum HLK1]
 gi|196479184|gb|ACG78712.1| DNA helicase II [Phenylobacterium zucineum HLK1]
          Length = 774

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 44/197 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            ++ +  ++  + E +LA++      V A AG+GKT +L  R+  +L    A P  LL +
Sbjct: 23  AADYLQGLNPEQREAVLATE--GPVLVLAGAGTGKTRVLTTRLAHILATGKARPWELLAV 80

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  +I   +                                      
Sbjct: 81  TFTNKAAREMRERISHMIGPAAEGLR---------------------------------- 106

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+    I+++      + S++ I D++  ++LI++     L +  +D     
Sbjct: 107 ---WLGTFHSVAAQILRRHAELVGLKSNYTILDDDDQERLIKQ----ILEAENIDAKRWT 159

Query: 189 KKAFYEILEISNDEDIE 205
            KA   +++   +    
Sbjct: 160 PKALAGLIDHWKNRGWR 176


>gi|325522724|gb|EGD01222.1| UvrD/REP helicase [Burkholderia sp. TJI49]
          Length = 272

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  +  + +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKGLNVDDEKFPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|328884521|emb|CCA57760.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae
           ATCC 10712]
          Length = 816

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 45/204 (22%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP 62
           H    + +  ++ +++   ++           + A AGSGKT +L  R+  LL   + HP
Sbjct: 63  HRPAVDPAALLEGLNE--QQRAAVVHTDTPLLIVAGAGSGKTRVLTHRIAHLLGTRHVHP 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T  AA EM  RV +++   +                                
Sbjct: 121 GQILAITFTNKAAGEMKERVEQLVGPRA-------------------------------- 148

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                   + V T H+ C  I+++   +   TS F+I D   SK+L+    +     + L
Sbjct: 149 ------NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMSLVCRD----LDL 198

Query: 183 DNNEELKKAFYEILEISNDEDIET 206
           D  +   K+F   +    +E I+ 
Sbjct: 199 DPKKFPPKSFSAKISNLKNELIDE 222


>gi|218438504|ref|YP_002376833.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424]
 gi|218171232|gb|ACK69965.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424]
          Length = 772

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 21/200 (10%)

Query: 10  HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
            S  +D +SQ    Q  A         V A AGSGKT  L  R+  L+      P  +L 
Sbjct: 1   MSVNLDYLSQLNPSQRRAVQHYCGPLLVVAGAGSGKTRALTYRIAHLIRYHQVDPENILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  I         E L+ E    +    ++ D    + LL  +  T
Sbjct: 61  VTFTNKAAREMKERIERIFA-------EDLAQEKHGQKFVLLSEYD---QKQLLSKVYRT 110

Query: 128 -PGGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLASI 180
               L + T H+ C  I++    ++  E   T   +F+I DE  ++ +++      L   
Sbjct: 111 VTKKLWIGTFHSLCARILRYDINKYQDERGRTWNRNFSILDESDAQSIVKNIVTKQLN-- 168

Query: 181 MLDNNEELKKAFYEILEISN 200
           + +   E +   Y+I    N
Sbjct: 169 LNEKKFEPRSIRYQISNAKN 188


>gi|158317729|ref|YP_001510237.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec]
 gi|158113134|gb|ABW15331.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec]
          Length = 851

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E ++ ++    ++           V A AGSGKT +L  R+  LL A  A P  +L +T 
Sbjct: 66  ELLEGLN--PQQRAAVVHAGSPLLVVAGAGSGKTRVLTHRIAYLLAARGARPGEILAITF 123

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  I+                             +AR            
Sbjct: 124 TNKAAGEMKERVEAIVGG---------------------------RAR-----------A 145

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + V T H+ C  I++         S F+I D   +++LI    +  
Sbjct: 146 MWVSTFHSACVRILRSEASRLGFGSSFSIYDAADAQRLITLVTRDL 191


>gi|302383276|ref|YP_003819099.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193904|gb|ADL01476.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264]
          Length = 799

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 43/195 (22%)

Query: 12  ETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           ET D +     EQ  A +       V A AG+GKT +L  R+  +L    A P  LL +T
Sbjct: 44  ETPDYLGGLNPEQREAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVT 103

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  +I                      P+   +               
Sbjct: 104 FTNKAAREMRERITHLIG---------------------PSAEGLR-------------- 128

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+    I+++ P    + S F I D +  ++L+++     L +  +D      
Sbjct: 129 --WLGTFHSVAAQILRRHPELVGLKSSFTILDTDDQERLLKQ----LLEAANIDTKRWTP 182

Query: 190 KAFYEILEISNDEDI 204
           K+   +++   +   
Sbjct: 183 KSLSGLIDHWKNRGW 197


>gi|295401728|ref|ZP_06811694.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112464|ref|YP_003990780.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1]
 gi|294976215|gb|EFG51827.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217565|gb|ADP76169.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1]
          Length = 730

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +  + +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 9   LANLNEQQQAAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLAEKQVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMKERVQALLGGAAE--------------------------------------EIWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F+I D      +++   K 
Sbjct: 91  TFHSMCVRILRRDIDRIGIDRNFSILDTTDQLSVLKNILKE 131


>gi|156503119|ref|YP_001429184.1| DNA helicase II [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290953989|ref|ZP_06558610.1| DNA helicase II [Francisella tularensis subsp. holarctica URFT1]
 gi|295312608|ref|ZP_06803360.1| DNA helicase II [Francisella tularensis subsp. holarctica URFT1]
 gi|156253722|gb|ABU62228.1| DNA helicase II [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 740

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|56707295|ref|YP_169191.1| DNA helicase II [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669765|ref|YP_666322.1| DNA helicase II [Francisella tularensis subsp. tularensis FSC198]
 gi|224456360|ref|ZP_03664833.1| DNA helicase II [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369977|ref|ZP_04985985.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874133|ref|ZP_05246843.1| DNA helicase II [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603787|emb|CAG44754.1| DNA helicase II [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320098|emb|CAL08137.1| DNA helicase II [Francisella tularensis subsp. tularensis FSC198]
 gi|151568223|gb|EDN33877.1| hypothetical protein FTBG_01576 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840132|gb|EET18568.1| DNA helicase II [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158414|gb|ADA77805.1| DNA helicase II [Francisella tularensis subsp. tularensis NE061598]
          Length = 740

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|332184707|gb|AEE26961.1| ATP-dependent DNA helicase UvrD/PcrA [Francisella cf. novicida
           3523]
          Length = 740

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEGRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +LI    K  + ++ LD+ +   K     
Sbjct: 90  FHGVAHRLLRKHAHELGLDKNFRILDQDEQAQLI----KKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|317488584|ref|ZP_07947129.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA]
 gi|325832008|ref|ZP_08165105.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1]
 gi|316912326|gb|EFV33890.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA]
 gi|325486329|gb|EGC88781.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1]
          Length = 813

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           ID ++  + E ++  D      V A AGSGKT +L  R+  L+  +   P  +L +T T 
Sbjct: 5   IDSLNGPQREAVVTVD--GPLLVLAGAGSGKTRVLTYRIANLIENHDVAPWEILAITFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  ++                                           G+ 
Sbjct: 63  KAAAEMRERLNGLVGPRCR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  +++    +   T +F I D +  K+L +E     
Sbjct: 85  VSTFHSMCVRMLRSDAEKLGFTRNFTIYDTDDQKRLYKEIMAEL 128


>gi|89256929|ref|YP_514291.1| DNA helicase II [Francisella tularensis subsp. holarctica LVS]
 gi|115315293|ref|YP_764016.1| DNA helicase II [Francisella tularensis subsp. holarctica OSU18]
 gi|167009993|ref|ZP_02274924.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC200]
 gi|254368194|ref|ZP_04984214.1| DNA helicase II [Francisella tularensis subsp. holarctica 257]
 gi|89144760|emb|CAJ80095.1| DNA helicase II [Francisella tularensis subsp. holarctica LVS]
 gi|115130192|gb|ABI83379.1| DNA helicase II [Francisella tularensis subsp. holarctica OSU18]
 gi|134254004|gb|EBA53098.1| DNA helicase II [Francisella tularensis subsp. holarctica 257]
          Length = 740

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|227537987|ref|ZP_03968036.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242063|gb|EEI92078.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 758

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 43/173 (24%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D ++     Q  A +       + A AGSGKT ++  RV  L+     P  +L LT T 
Sbjct: 1   MDYLAGLNPTQRAAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+++++   +                                        + 
Sbjct: 61  KAAKEMRERIMKVVGGEAK--------------------------------------NIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           + T H+    I++          +F I D + +K L+    +S L  + LD+ 
Sbjct: 83  MGTFHSVFARILRVEAELIGYPRNFTIYDTDDTKSLL----RSILKEMNLDDK 131


>gi|197302046|ref|ZP_03167107.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC
           29176]
 gi|197298855|gb|EDY33394.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC
           29176]
          Length = 767

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 41/163 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D +++ + E +  +D      + A AGSGKT +L  R+  L+   N +P  +L +T T  
Sbjct: 5   DKLNEPQREAVYHTD--GPLLILAGAGSGKTRVLTHRIAYLIEERNVNPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   S                                        + V
Sbjct: 63  AAGEMRERVDSLVGFGSE--------------------------------------SIWV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C  I+++F       + F I D +  K L++E  K  
Sbjct: 85  STFHSMCVRILRRFIDRLGYDNRFTIYDTDDQKTLMKEVCKKV 127


>gi|254198264|ref|ZP_04904686.1| DNA helicase II [Burkholderia pseudomallei S13]
 gi|169655005|gb|EDS87698.1| DNA helicase II [Burkholderia pseudomallei S13]
          Length = 787

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAVPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|322385777|ref|ZP_08059421.1| exonuclease RexA [Streptococcus cristatus ATCC 51100]
 gi|321270515|gb|EFX53431.1| exonuclease RexA [Streptococcus cristatus ATCC 51100]
          Length = 1223

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT+++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TPEQIQAIYSSGQNILVSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +     S +  E    E+                R  L   L       + T+ AF
Sbjct: 89  ERLEK---EMSLVIKETQDQEL----------------RQHLAQQLAEIANADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            + ++ ++     +  HF I      + +++      L     +++++  + F  +++  
Sbjct: 130 TQKVVNKYGYLLGLAPHFRILQSASEQLILQNEVFDQLFDTYYESDQQ--ELFSRLVKNF 187

Query: 200 NDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
             +       DI   R  +  +  F  S    RK +E +  
Sbjct: 188 TGKR-----KDISGFRQQIYSIYSFLQSTSNPRKWLEDTFL 223


>gi|288958808|ref|YP_003449149.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp.
           B510]
 gi|288911116|dbj|BAI72605.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp.
           B510]
          Length = 773

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 45/193 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            +D ++ T+   + A D      V A AG+GKT +L  R+  LL+   A    +L +T T
Sbjct: 28  YLDGLNPTQRAAVEALD--GPVLVLAGAGTGKTRVLTTRLAHLLMTRRAAAFQILAVTFT 85

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                         P G 
Sbjct: 86  NKAAREMRERVAHLVGIE--------------------------------------PEGW 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA    I+++      + S+F I D +   +LI++     L +  +D+ +   + 
Sbjct: 108 WLGTFHALAARILRRHAELVGLKSNFTILDTDDQVRLIKQ----LLEAENIDSKKWPARQ 163

Query: 192 FYEILEISNDEDI 204
               +E   D  +
Sbjct: 164 ILGAIERWKDRGL 176


>gi|300772620|ref|ZP_07082490.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760923|gb|EFK57749.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 758

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 43/173 (24%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D ++     Q  A +       + A AGSGKT ++  RV  L+     P  +L LT T 
Sbjct: 1   MDYLAGLNPTQRAAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+++++   +                                        + 
Sbjct: 61  KAAKEMRERIMKVVGGEAK--------------------------------------NIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           + T H+    I++          +F I D + +K L+    +S L  + LD+ 
Sbjct: 83  MGTFHSVFARILRVEAELIGYPRNFTIYDTDDTKSLL----RSILKEMNLDDK 131


>gi|222823417|ref|YP_002574991.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari
           RM2100]
 gi|222538639|gb|ACM63740.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari
           RM2100]
          Length = 915

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 12/207 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT T   A EM  R+ +    +  L 
Sbjct: 9   LALEASAGSGKTFALSVRFVALVLMGAKINEILALTFTNKTANEMKERIFKTFLEFDMLE 68

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           +    AE  ++        +   A             L + T  +F   I++ F L  ++
Sbjct: 69  NGQNKAECNELMKMLDKSKEELIALKEKYKDEFLRSKLNIYTFDSFFSQIIRSFALNLDL 128

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
            S F I +E  +        K+ +A +   + EEL+   Y I++  +  D    + ++  
Sbjct: 129 MSDFIITEESDN-------YKNFIAKL---SEEELQALAYYIMQTKSKSDFFKNLENLYV 178

Query: 214 NRTALKLIF--FFFSYLWRRKIIEKSL 238
               +K        + +  +K I++ +
Sbjct: 179 RSCDIKPNSNAHLPNKVNLKKSIDEFI 205


>gi|328955121|ref|YP_004372454.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
 gi|328455445|gb|AEB06639.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
          Length = 847

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 39/162 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID+ S   +++           V A AGSGKT +L  R+  ++      P  +L +T T
Sbjct: 5   AIDIASLNTAQREAVLSTEGPLLVLAGAGSGKTRVLTYRIAHMVADLGVRPWQILAITFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  ++                                           G+
Sbjct: 65  NKAAAEMRERIQALMDGGMR--------------------------------------GM 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            V T HA C  I+++       T  F I D++ S++L+ +  
Sbjct: 87  WVCTFHAMCVRILREDADLIGYTGQFTIYDDDDSRRLVRDIM 128


>gi|254369794|ref|ZP_04985804.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC022]
 gi|157122753|gb|EDO66882.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC022]
          Length = 740

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|325846585|ref|ZP_08169500.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481343|gb|EGC84384.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 729

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +DL +    ++           V A AGSGKT +L   +  L+     +P+ +L +T T 
Sbjct: 1   MDLSNLNDKQKEAVLHEKGPLLVVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                       E    L 
Sbjct: 61  KAANEMKERISNLLN--------------------------------------EDVSHLW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I++    +    ++F I D    K L++E  K  
Sbjct: 83  IGTFHSICARILRMNINKIGYDNNFTIYDTNDQKTLVKEIIKDL 126


>gi|311744700|ref|ZP_07718497.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272]
 gi|311312009|gb|EFQ81929.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272]
          Length = 774

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 40/167 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           SET+ L     +++   S P     V A AGSGKT +L +R+  L+ A  AHP ++L +T
Sbjct: 24  SETL-LEDLNDAQREAVSHPGGPLLVVAGAGSGKTRVLTRRIAWLMAARGAHPGSILAIT 82

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV E++   S                                       
Sbjct: 83  FTNKAAAEMRERVAEMVGGASR-------------------------------------- 104

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++       TS F + D   S++L+    +  
Sbjct: 105 AMWVSTFHSACVRILRREAATLGYTSSFTVYDAADSRRLMTLVCRDM 151


>gi|167824492|ref|ZP_02455963.1| DNA helicase II [Burkholderia pseudomallei 9]
          Length = 525

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|194337239|ref|YP_002019033.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309716|gb|ACF44416.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 739

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 39/164 (23%)

Query: 15  DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           D ++     ++      T    V A AGSGKT ++  R+  L+      P  +L LT T 
Sbjct: 3   DFLNDLNEVQRNAVIATTGPVMVLAGAGSGKTRVITYRIAYLIRNEGVSPQNILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HRV  ++   S                                       GL 
Sbjct: 63  KAAGEMRHRVDTLLHQGSSR-------------------------------------GLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++          +F+I D E SK LI ++    
Sbjct: 86  IGTFHSIFARILRNSIDLIGYDKNFSIFDSEDSKSLIRQSMAEL 129


>gi|227504218|ref|ZP_03934267.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227199173|gb|EEI79221.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 869

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 53/209 (25%)

Query: 4   HNSFQEHSETIDLISQ-TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NA 60
           H +  +     D +++    +Q+ A     S   + A AGSGKT +L +R+  L+     
Sbjct: 61  HAAADQRPAGPDPLTEGLNPQQIEAVTHAGSPLLIVAGAGSGKTAVLTRRIAYLMRNRGV 120

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  +L +T T  AAAEM  RV +++   +                              
Sbjct: 121 APWEILAITFTNKAAAEMKERVGQLVGPVAE----------------------------- 151

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS---- 175
                     + V T H+ C  I++Q       + ++F I D + +++L+    K     
Sbjct: 152 ---------RMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLTMIAKDMQLD 202

Query: 176 -------TLASIMLDNNEELKKAFYEILE 197
                   LA+ + ++  EL    Y + E
Sbjct: 203 LKKYTARVLANQISNHKNELVSPDYALAE 231


>gi|198275887|ref|ZP_03208418.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM 17135]
 gi|198271516|gb|EDY95786.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM 17135]
          Length = 784

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D +++    Q  A       + V A AGSGKT +L  ++  LL     P ++L LT T  
Sbjct: 3   DYLNELNESQREAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLDNGYEPWSILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                             +AR+L            +
Sbjct: 63  AAREMKERIARQVGQ--------------------------ERARYL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        T +F I D   SK L++   K  
Sbjct: 86  GTFHSIFSRILRAEAEALGFTPNFTIYDATDSKSLVKTIIKEM 128


>gi|297622299|ref|YP_003703733.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
 gi|297163479|gb|ADI13190.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
          Length = 1106

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 42/181 (23%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++    EQ  A++     A V A AGSGKT  +V R+  L+     +P+ +L +T T  
Sbjct: 10  LLAVLNEEQRAAAEHFQGPALVLAGAGSGKTRTVVHRIAYLMDAHEVYPTEILAVTFTNK 69

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  RV  ++   +                                        L V
Sbjct: 70  AAGELKERVAHLMGEAAK--------------------------------------DLWV 91

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I++ +     +   FAI D+    ++++E  +    + + D N  + +A  
Sbjct: 92  STFHSACLRILRAYGGLIGLEPGFAIYDDTDQLEVLKEILERV--TGLGDANPRVLRALI 149

Query: 194 E 194
           +
Sbjct: 150 D 150


>gi|78221316|ref|YP_383063.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
 gi|78192571|gb|ABB30338.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
          Length = 742

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 45/193 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL+      Q  A         V A AGSGKT ++V R+  L+      P  +L +T T
Sbjct: 1   MDLLKNLNPPQKEAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLICNLGVPPWQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++ A                 G+ P                      
Sbjct: 61  NKAAGEMRERVERLVGA-----------------GEAPL--------------------- 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C   +++        S FAI D++ ++KL++E     +A + LD      ++
Sbjct: 83  -IATFHSTCARFLRRDIHHLGYDSSFAIYDDKDAEKLLKE----VIAGLGLDEKRFPARS 137

Query: 192 FYEILEISNDEDI 204
           F   ++   +  I
Sbjct: 138 FAAAIDDCKNRGI 150


>gi|330998558|ref|ZP_08322378.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329568156|gb|EGG49975.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 819

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 37/154 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++         + V A AGSGKT +L  ++  LL     P  +L LT T  AA EM  R+
Sbjct: 17  QRRAVCYDKGPSLVIAGAGSGKTRVLTYKIAYLLEQGYKPWNILALTFTNKAAREMKERI 76

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             ++                                       E   GL + T H+    
Sbjct: 77  ARLVGH-------------------------------------ELAAGLWMGTFHSVFSR 99

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           I+++   E   +SHF I D+  S+ LI+   +  
Sbjct: 100 ILRKEADEIGFSSHFTIYDQADSRNLIKTVIREM 133


>gi|322804716|emb|CBZ02268.1| ATP-dependent nuclease, subunit A [Clostridium botulinum H04402
           065]
          Length = 319

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 84/224 (37%), Gaps = 35/224 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T  ++        +  V+A AG+GKT +LVQR++  +L    P     LL +T 
Sbjct: 1   MSGTKWTDEQRQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+ + I+               K   + P    + K   LL         
Sbjct: 61  TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++       I  +F I DE +   + +EA       +    NE+   
Sbjct: 99  SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENED--- 155

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            F  ++E         L          L+L  F  S  +    +
Sbjct: 156 -FINLVESYASRKDTRL------QEVVLELHRFAKSAPFPYTWL 192


>gi|294630996|ref|ZP_06709556.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14]
 gi|292834329|gb|EFF92678.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14]
          Length = 841

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           + +  ++ ++   +++           + A AGSGKT +L  R+  LL     HP  +L 
Sbjct: 80  DSAALLEGLN--NNQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAYLLAERGVHPGQILA 137

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV  ++   +                                     
Sbjct: 138 ITFTNKAAGEMKERVEHLVGPRA------------------------------------- 160

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + V T H+ C  I+++       TS F+I D   SK+L+    +  
Sbjct: 161 -NAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 208


>gi|208780175|ref|ZP_03247517.1| DNA helicase II [Francisella novicida FTG]
 gi|208743824|gb|EDZ90126.1| DNA helicase II [Francisella novicida FTG]
          Length = 740

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|118498158|ref|YP_899208.1| DNA helicase II [Francisella tularensis subsp. novicida U112]
 gi|194324331|ref|ZP_03058104.1| DNA helicase II [Francisella tularensis subsp. novicida FTE]
 gi|118424064|gb|ABK90454.1| DNA helicase II [Francisella novicida U112]
 gi|194321396|gb|EDX18881.1| DNA helicase II [Francisella tularensis subsp. novicida FTE]
          Length = 740

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|161829860|ref|YP_001595927.1| DNA-dependent helicase II [Coxiella burnetii RSA 331]
 gi|161761727|gb|ABX77369.1| DNA helicase II [Coxiella burnetii RSA 331]
          Length = 720

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           E+   ++ ++  + E    + P     V A AGSGKT +L  R+  L+   N  P ++L 
Sbjct: 2   ENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++                                         
Sbjct: 60  VTFTNKAAYEMRGRIESMLGMP-------------------------------------- 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + V T H     +++    +A +   F I D +   +LI   ++    ++ L+ ++ 
Sbjct: 82  MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEESQW 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    +E 
Sbjct: 138 PPKQTQWFINKQKEEG 153


>gi|306835613|ref|ZP_07468623.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC
           49726]
 gi|304568504|gb|EFM44059.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC
           49726]
          Length = 847

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 41/160 (25%)

Query: 20  TKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
              +QL A +   R   + A AGSGKT +L +R+  L+     +P  +L +T T  AAAE
Sbjct: 53  LNPQQLEAVTHTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKAAAE 112

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV  ++   +                                        + V T H
Sbjct: 113 MKERVGSLVGPVAE--------------------------------------RMWVSTFH 134

Query: 138 AFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
           + C  I++Q       + ++F I D + +++L+    K  
Sbjct: 135 SICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDM 174


>gi|260892971|ref|YP_003239068.1| UvrD/REP helicase [Ammonifex degensii KC4]
 gi|260865112|gb|ACX52218.1| UvrD/REP helicase [Ammonifex degensii KC4]
          Length = 707

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 58/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
           +D + +   EQ  A +       V A AGSGKT +L  R+  L+      P  +L LT T
Sbjct: 1   MDWLKELNPEQRAAVEHGEGPLLVLAGAGSGKTRVLTYRIAYLITYRGVPPEAILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   +                                        L
Sbjct: 61  NKAAEEMRARVTSLLPREAE--------------------------------------DL 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  +++Q          FAI DE+  + L+ E  +  
Sbjct: 83  WVMTFHAACARLLRQEIHHLGRDRDFAIYDEDDRRALMRECLREL 127


>gi|167836886|ref|ZP_02463769.1| DNA helicase II [Burkholderia thailandensis MSMB43]
          Length = 669

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|114775529|ref|ZP_01451097.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1]
 gi|114553640|gb|EAU56021.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1]
          Length = 1105

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 11/220 (5%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +L A +P  S  V A AGSGKT +L QR+LRLL     P  +L LT T+ AAAEM  RVL
Sbjct: 6   RLQARNPAASFLVQAPAGSGKTELLTQRILRLLAVVDAPEEILALTFTRKAAAEMRGRVL 65

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           E +        E +     K+   +  ++ ++++      + + P  L++ T+ +F  A+
Sbjct: 66  EALAMT-----EPVDPASHKMDTWRLAQAALARSNACGWHLEKHPSRLRMMTLDSFTHAL 120

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
             Q PL +      A  +      L  EA +  +  ++L + +  + A   + +  N   
Sbjct: 121 ASQMPLLSGFGRMPAACNYP--LPLYREAAELAVEKMILRSPD--RAAVLLLHQDHNSVA 176

Query: 204 IETLISDIISNRTALKLIFFFFSYL--WRRKIIEKSLWSI 241
           +  L++ ++  R          +      R ++E SL++I
Sbjct: 177 LINLVAAMLGRRDQWLRDVQLHAGDTHALRAVLEDSLFAI 216


>gi|184201466|ref|YP_001855673.1| ATP-dependent DNA helicase PcrA [Kocuria rhizophila DC2201]
 gi|183581696|dbj|BAG30167.1| ATP-dependent DNA helicase UvrD1 [Kocuria rhizophila DC2201]
          Length = 818

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++     Q  A + +     + A AGSGKT +L  R+  LL    A    +L +T T  
Sbjct: 36  LVAGLNEPQRAAVEHSGAPLLIVAGAGSGKTRVLTHRIAHLLATGRARRGEILAITFTNK 95

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+ E++   +                                        + +
Sbjct: 96  AAAEMRERIAELVGDSART--------------------------------------MWI 117

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      + ++F+I D   S +LI +  K 
Sbjct: 118 STFHSLCVRILRREAKTLGLNTNFSIYDSADSLRLITQVAKQ 159


>gi|153206879|ref|ZP_01945697.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177']
 gi|165918247|ref|ZP_02218333.1| DNA helicase II [Coxiella burnetii RSA 334]
 gi|120576952|gb|EAX33576.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177']
 gi|165918107|gb|EDR36711.1| DNA helicase II [Coxiella burnetii RSA 334]
          Length = 720

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           E+   ++ ++  + E    + P     V A AGSGKT +L  R+  L+   N  P ++L 
Sbjct: 2   ENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++                                         
Sbjct: 60  VTFTNKAAYEMRGRIESMLGMP-------------------------------------- 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + V T H     +++    +A +   F I D +   +LI   ++    ++ L+ ++ 
Sbjct: 82  MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEESQW 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    +E 
Sbjct: 138 PPKQTQWFINKQKEEG 153


>gi|257790705|ref|YP_003181311.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257474602|gb|ACV54922.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 813

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           ID ++  + E ++  D      V A AGSGKT +L  R+  L+  +   P  +L +T T 
Sbjct: 5   IDSLNGPQREAVVTVD--GPLLVLAGAGSGKTRVLTYRIANLIENHDVAPWEILAITFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  ++                                           G+ 
Sbjct: 63  KAAAEMRERLNGLVGPRCR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  +++    +   T +F I D +  K+L +E     
Sbjct: 85  VSTFHSMCVRMLRSDAEKLGFTRNFTIYDTDDQKRLYKEIMAEL 128


>gi|116628401|ref|YP_821020.1| ATP-dependent exoDNAse beta subunit [Streptococcus thermophilus
           LMD-9]
 gi|122267004|sp|Q03IZ8|ADDA_STRTD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116101678|gb|ABJ66824.1| DNA helicase/exodeoxyribonuclease V, subunit A [Streptococcus
           thermophilus LMD-9]
          Length = 1217

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L ++        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +T                   K   +++  + R  L   +   G   + T+ AF
Sbjct: 89  ERLEKRLT-------------------KHLGQAETDEERAFLSDQIAKIGTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196
            + ++ Q+     ++  F I  +  +   +  E         M   + +L +        
Sbjct: 130 TQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
                +    L+ DI           F  +     K + ++L 
Sbjct: 190 HSKTSKAFRDLVYDI---------YSFSQATADPEKWLRQNLL 223


>gi|296268638|ref|YP_003651270.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833]
 gi|296091425|gb|ADG87377.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833]
          Length = 786

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++  + E +L         + A AGSGKT +L  R+  LL     HP+ +L +T T
Sbjct: 45  LLDGLNPQQREAVL--HQGSPLLIVAGAGSGKTRVLTHRIAYLLAERRVHPAEILAITFT 102

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   S L                                      +
Sbjct: 103 NKAAREMRDRVDRLVGPRSQL--------------------------------------M 124

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++        ++F I D+  +++L+    +  
Sbjct: 125 WVMTFHSACVRILRREAKRLGYPTNFTIYDQADAQRLMAMVCREL 169


>gi|294054220|ref|YP_003547878.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221]
 gi|293613553|gb|ADE53708.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221]
          Length = 665

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 82/233 (35%), Gaps = 57/233 (24%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           SF      ID  ++   EQ  A  +DP   A V A AGSGKT  L  RV  LL A     
Sbjct: 7   SFSSAFAPIDFRAELNDEQYAAVTADPG-PALVLAGAGSGKTRTLTYRVAYLLHAGVQAH 65

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT T  AA EM  RV ++                                      
Sbjct: 66  EILLLTFTNKAAREMLERVEDLTAVSRR-------------------------------- 93

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                  L   T H+  + I++Q      +  H+ I DE +++ L++ A  +     +  
Sbjct: 94  ------QLWGGTFHSIAQRILRQHGEHIGLKRHYTILDESEAESLLKNAINAVDPKFIKG 147

Query: 184 NNEELKKAFYEILEISND----------------EDIETLISDIISNRTALKL 220
            N    K    ++  + +                +D+   I+DI +   A+KL
Sbjct: 148 KNNPKPKVVANMISYARNTCRSVYEEADDHFPFLDDMAQKIADIYTKYQAMKL 200


>gi|150024269|ref|YP_001295095.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770810|emb|CAL42275.1| Probable ATP-dependent DNA helicase, UvrD/REP family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1052

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 11/209 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEII 86
           P  S + +A+AGSGKT+ LV+  L+++L   H      +L +T T  A  EM  R+++ +
Sbjct: 4   PAFSIY-NASAGSGKTYTLVKEYLKIILKAKHNDAYKNILAITFTNKAVFEMKTRIIDSL 62

Query: 87  TAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +S  +    S ++    GK+ N       +KA+ ++  I+       + TI  F   +
Sbjct: 63  FDFSKDNPTEKSIQLMNDLGKEINLNQSQIKTKAQSIIKNIIHNYAAFDISTIDKFTHKV 122

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++ F  +  +   F ++ + ++  L++EA  + +A    D  + L K   +      D+D
Sbjct: 123 IRAFAFDLGLPITFDVSLDTEN--LLQEAVDAIVAQAGED--QVLTKLLVDFTMEKTDDD 178

Query: 204 IETLISDIISNRTALKLIFFFFSYLWRRK 232
               IS  I N   L L   +   +   K
Sbjct: 179 KSWDISSEIMNTGRLVLNENYREEILSLK 207


>gi|260220810|emb|CBA28747.1| DNA helicase II [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 872

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 46/235 (19%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
           +SF     T  L+     EQL A   P   A + A AGSGKT +L  R+  LL      P
Sbjct: 59  HSFAAAGSTPPLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQNGYVSP 118

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T  AA EM  R+  ++                                    
Sbjct: 119 GGILAVTFTNKAAKEMMTRLSAMLPV---------------------------------- 144

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                  G+ + T H  C   ++     A +   F I D +        A K       +
Sbjct: 145 ----NVRGMWIGTFHGLCNRFLRAHFKNAGLPQAFQILDTQDQLS----AIKRLCKQYKI 196

Query: 183 DNNEELKKAFYEILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           D+     K     +    +E +    +++     R  +++   +     R  +++
Sbjct: 197 DDERFPPKQMAWFIGNCKEEGLRPKDVVASDPDTRKKIEIYQLYEDQCQREGVVD 251


>gi|254373504|ref|ZP_04988991.1| hypothetical protein FTCG_01457 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571229|gb|EDN36883.1| hypothetical protein FTCG_01457 [Francisella novicida GA99-3549]
          Length = 740

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|254374966|ref|ZP_04990446.1| DNA helicase II [Francisella novicida GA99-3548]
 gi|151572684|gb|EDN38338.1| DNA helicase II [Francisella novicida GA99-3548]
          Length = 740

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|260590017|ref|ZP_05855930.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
 gi|331084334|ref|ZP_08333438.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539529|gb|EEX20098.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
 gi|330401598|gb|EGG81179.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 736

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 43/184 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L  R+  L+     +P  ++ +T T  AA EM
Sbjct: 8   NTEQREAVFHTEGPVLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAGEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   +                                        + V T H+
Sbjct: 68  RERVDKIVGFGAE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++++F       ++F I D +  K L+++  K     + +D     +KA    +  
Sbjct: 90  SCVRMLRRFIDRLGYDTNFTIYDADDQKTLMKDICKR----LNIDTKVYKEKAILAAISS 145

Query: 199 SNDE 202
           + DE
Sbjct: 146 AKDE 149


>gi|89069676|ref|ZP_01157013.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516]
 gi|89044756|gb|EAR50862.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516]
          Length = 794

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 44/198 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q     +D ++  +   + A +      + A AG+GKT  L  R++ LL    A P+ +L
Sbjct: 23  QSAPPYLDGLNPAQRAAVEALE--GPVLMLAGAGTGKTKALTTRIVHLLCTGSARPNEIL 80

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+   +                                        
Sbjct: 81  AVTFTNKAAREMKSRIGGQLGEAVE----------------------------------- 105

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+ C  ++++    A + S+F I D +   +L+++     +A+  +D+  
Sbjct: 106 --GMPWLGTFHSICVKLLRRHAELAGLKSNFTILDTDDQIRLLKQ----LVAAANIDDKR 159

Query: 187 ELKKAFYEILEISNDEDI 204
              +    +++   +   
Sbjct: 160 WPARMLAGVIDNWKNRAW 177


>gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319438641|gb|EFV93547.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 824

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 80/225 (35%), Gaps = 46/225 (20%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           HS  +D ++    +    +       + A AGSGKT +L +R+  LL    AHP  +L +
Sbjct: 15  HSPLLDGLN--PQQAAAVTHRGGPLLIVAGAGSGKTSVLTRRIAYLLAEGGAHPGQILAI 72

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AAAEM  RV  ++   +                                      
Sbjct: 73  TFTNKAAAEMRERVAALVGPHAE------------------------------------- 95

Query: 129 GGLKVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             + V T H+ C  I++          S+F I D + S++L+    K     +       
Sbjct: 96  -RMWVATFHSICVRILRAQSALLGTRNSNFTIYDSDDSRRLLGMIAKEQQLEVKKFTPRM 154

Query: 188 LKKAFYEILEISND--EDIETLISDIISNRTALKLIFFFFSYLWR 230
           L  A         D  E ++  + D  S+RTA  +   F  Y  R
Sbjct: 155 LASAISNHKNELRDPAEAMDRALED--SDRTAQTVAAVFTEYQAR 197


>gi|170077156|ref|YP_001733794.1| ATP-dependent DNA helicase II PcrA [Synechococcus sp. PCC 7002]
 gi|169884825|gb|ACA98538.1| ATP-dependent DNA helicase II PcrA [Synechococcus sp. PCC 7002]
          Length = 788

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 17/171 (9%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++Q    Q  A +       V A AGSGKT  L  R+  L+  +   P  +L +T T 
Sbjct: 3   DLLAQLNPSQRRAVEHFCGPLLVVAGAGSGKTRALTFRIAHLIRNHRVDPENILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV          + ++   +  K  G  P          +   + +    L 
Sbjct: 63  KAAREMKERVE------LLYAQQLAELQHGKPLGGLPEFEQKKLRSQVYKQVTKQ---LW 113

Query: 133 VQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTL 177
           + T H+ C  I++    ++  E   T   +F I D+   + LI+      L
Sbjct: 114 IGTFHSLCARILRYDINKYQDERGRTWQRNFTIMDDSDVQTLIKRIVTQQL 164


>gi|20807099|ref|NP_622270.1| superfamily I DNA/RNA helicase [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515591|gb|AAM23874.1| Superfamily I DNA and RNA helicases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 713

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 75/221 (33%), Gaps = 50/221 (22%)

Query: 12  ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +  ++++    +Q  A +       + A AGSGKT +L  R+  L+      PS +L +T
Sbjct: 6   KMKEILANLNEQQKEAVTTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKVSPSNILAIT 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++                                          G
Sbjct: 66  FTNKAAEEMKTRVENLLGYV---------------------------------------G 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            L V T H+ C  I+++   +     +F I D    K L++E     L  + L   +   
Sbjct: 87  DLWVSTFHSACVRILRRDIDKLGYDRNFVIFDTTDQKALVQEC----LKELDLSEKQYPI 142

Query: 190 KAFYEILEISNDE-----DIETLISDIISNRTALKLIFFFF 225
           K     +  + D+     D      D   NR   ++   + 
Sbjct: 143 KMVLNAISSAKDKMVYPDDYIDFFGDTYRNRKIKEIYKLYQ 183


>gi|227872193|ref|ZP_03990560.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium
           sinus F0268]
 gi|227841976|gb|EEJ52239.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium
           sinus F0268]
          Length = 1283

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 33/224 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +   T+ ++ + +    +  VSA AGSGKT +LV+ VL L+L  NA  S+L+ +T T+AA
Sbjct: 1   MALWTEEQKAVIAHREGNLLVSAAAGSGKTAVLVEHVLSLILEENASLSSLVLMTFTEAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ + +        +                      + +L  I   P    + 
Sbjct: 61  AEEMKERIKKRLEEHLQKGYD----------------------KRILREIALLPT-ANIS 97

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHAFC+ ++++     +I +HF I D  +   L  +  +  L        E       +
Sbjct: 98  TIHAFCKRLIEENYAGLSIDAHFRIGDTGEMSLLQSDILEEILEEEYERKEESFLAFVDQ 157

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                 D+ IE LI         LKL     +  + +  ++  L
Sbjct: 158 FSMGKKDKGIEELI---------LKLYNLASAMPFPKAYLQGLL 192


>gi|167816120|ref|ZP_02447800.1| putative helicase [Burkholderia pseudomallei 91]
          Length = 703

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|298207221|ref|YP_003715400.1| putative helicase [Croceibacter atlanticus HTCC2559]
 gi|83849857|gb|EAP87725.1| putative helicase [Croceibacter atlanticus HTCC2559]
          Length = 1054

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 10/173 (5%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  LV+  L LL +        ++L +T T  A AEM  R++E + A+S  +
Sbjct: 10  NASAGSGKTFSLVRDYLSLLFSAKKTDAFRSILAITFTNKAVAEMKSRIVENLIAFSKDN 69

Query: 94  -DEILSAEITKIQGKKPNKSDMSKARH--LLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             +   A +  +        D+ K R   LL  ++      ++ TI  F   +++ F  +
Sbjct: 70  TQDDYLAMLNAVANSTNISQDLIKTRSVILLKKLIHNYAAFEISTIDGFTHRVLRTFAKD 129

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
             + S+F +  +     ++ EA    +A    D  +EL K   +      D+D
Sbjct: 130 LGLPSNFEVTMQVD--DILHEAVDKLIAKAGED--KELTKVLIDFALSKADDD 178


>gi|145295025|ref|YP_001137846.1| hypothetical protein cgR_0969 [Corynebacterium glutamicum R]
 gi|140844945|dbj|BAF53944.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 763

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 41/165 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           DLI     +Q  A +   S   + A AGSGKT +L +R+  L+     HP  +L +T T 
Sbjct: 12  DLIDGLNEQQRAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV +++   +                                        + 
Sbjct: 72  KAAAEMRERVSQLVGPVAE--------------------------------------RMW 93

Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I++Q       + ++F I D + S++L+    K  
Sbjct: 94  VATFHSVCVRILRQQAQLVEGLNTNFTIYDSDDSRRLLTMIAKDL 138


>gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 852

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 42/173 (24%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64
           S Q     ++ ++  + E    +       + A AGSGKT +L +R+  L+      P  
Sbjct: 47  SGQASDPLLEGLNPQQEE--AVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRERGVAPWQ 104

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AAAEM  RV +++   +                                  
Sbjct: 105 ILAITFTNKAAAEMKERVGQLVGPVAE--------------------------------- 131

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
                 + V T H+ C  I++        + ++F I D + +++L+    K  
Sbjct: 132 -----RMWVSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLLTMIAKDM 179


>gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 841

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 42/173 (24%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64
           S Q     ++ ++  + E    +       + A AGSGKT +L +R+  L+      P  
Sbjct: 36  SGQASDPLLEGLNPQQEE--AVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRERGVAPWQ 93

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AAAEM  RV +++   +                                  
Sbjct: 94  ILAITFTNKAAAEMKERVGQLVGPVAE--------------------------------- 120

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
                 + V T H+ C  I++        + ++F I D + +++L+    K  
Sbjct: 121 -----RMWVSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLLTMIAKDM 168


>gi|257064330|ref|YP_003144002.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
 gi|256791983|gb|ACV22653.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
          Length = 772

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 41/161 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ID +++ + E +L ++      V A AGSGKT +L  R+  ++   N  P  ++ +T T 
Sbjct: 4   IDSLNEPQREAVLCTE--GPLLVLAGAGSGKTRVLTYRIAHMVQDLNVPPWQIMAITFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 62  KAANEMRERLGRLVGPSAR--------------------------------------GMW 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           V T H+ C  I++        +  F I D++ +K+L+++  
Sbjct: 84  VSTFHSMCVRILRVDCELLGFSKSFTIYDDDDTKRLLKDVM 124


>gi|167719901|ref|ZP_02403137.1| DNA helicase II [Burkholderia pseudomallei DM98]
          Length = 535

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185


>gi|119964268|ref|YP_946829.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1]
 gi|119951127|gb|ABM10038.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1]
          Length = 848

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 51/215 (23%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+     +Q  A     S   + A AGSGKT +L  R+  L+    AH   +L +T T  
Sbjct: 72  LLQGLNPQQEEAVKHAGSPLLIVAGAGSGKTRVLSNRIAYLIATKRAHHGEILAITFTNK 131

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+  ++ A +                                       G+ +
Sbjct: 132 AAAEMRERIEALVGARAK--------------------------------------GMWI 153

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASIML 182
            T H+ C  I+++      + S+F+I D   S +LI    K+            +   + 
Sbjct: 154 STFHSSCVRILRREAANVGLNSNFSIYDSADSLRLITLVAKNLDLDPKKFAPKAIQHKIS 213

Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
               EL  A   +   ++++  E  ++++    T 
Sbjct: 214 ALKNELIDADSYVSSANHNDPFEQAVAEVFKGYTQ 248


>gi|300727037|ref|ZP_07060456.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14]
 gi|299775581|gb|EFI72172.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14]
          Length = 784

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 38/167 (22%)

Query: 11  SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            E  +L+SQ    Q  A +    ++ V A AGSGKT +L  ++  LL+    P  +L LT
Sbjct: 1   MEEKELLSQLNDSQRAAVEYLDGASLVIAGAGSGKTRVLTYKIAYLLMKGYEPWDILALT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++ A                           +AR+L         
Sbjct: 61  FTNKAAKEMQSRIGSLVGA--------------------------DRARYL--------- 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+    I+++         +F I DE  S+ LI+   K  
Sbjct: 86  --NMGTFHSIFARILRREAAHIGYNPNFTIYDEADSRSLIKTIIKEL 130


>gi|134295512|ref|YP_001119247.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4]
 gi|134138669|gb|ABO54412.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4]
          Length = 787

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185


>gi|222111848|ref|YP_002554112.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221731292|gb|ACM34112.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 826

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 72/224 (32%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+     EQL A   P   A + A AGSGKT +L  R+  LL    A P  +L +T T  
Sbjct: 43  LLQNLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGLATPGGILAVTFTNK 102

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 103 AAKEMLTRLSAMLPI--------------------------------------NVRGMWI 124

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A +   F I D +        A K       +D      K   
Sbjct: 125 GTFHGLCNRLLRAHHKLAGLPQAFQILDTQDQLS----AIKRLCKQFNVDEERFPPKQLA 180

Query: 194 EILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +    +E +    + +     R  ++L   +     R  +++
Sbjct: 181 YFIAGCKEEGMRPRDVPAHDADTRKKVELYQLYEEQCQREGVVD 224


>gi|114707166|ref|ZP_01440064.1| DNA helicase II [Fulvimarina pelagi HTCC2506]
 gi|114537362|gb|EAU40488.1| DNA helicase II [Fulvimarina pelagi HTCC2506]
          Length = 849

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 44/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           +    +D ++    ++           V A AG+GKT +L  R+  +L    A PS +L 
Sbjct: 29  QAPNYLDGLN--PEQRAAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAWPSQILA 86

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++                                       E 
Sbjct: 87  VTFTNKAAREMKARIGLLVGG-------------------------------------EV 109

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G   + T H+    I+++      + S+F I D +   +LI++     + +  LD+   
Sbjct: 110 EGMPWLGTFHSIGVKILRKHAELVGLKSNFTILDTDDQIRLIKQ----LIQAENLDDKRW 165

Query: 188 LKKAFYEILEISNDEDIE 205
             + F  +L+   ++ +E
Sbjct: 166 PARTFANMLDGWKNKGLE 183


>gi|134301332|ref|YP_001121300.1| DNA helicase II [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049109|gb|ABO46180.1| DNA helicase II [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 740

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKLINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|305432274|ref|ZP_07401437.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
 gi|304444622|gb|EFM37272.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
          Length = 920

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 10/171 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L     + +L LT TK A+ EM  R++E        S
Sbjct: 7   LALEASAGSGKTFALSVRFVALILQGTKINEILALTFTKKASNEMKKRIIETFLNLEKES 66

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            +    E+ ++ G + ++    + +     + +    LK+ T  +F   I++ F L   +
Sbjct: 67  KKSECKELCELLGCEEDELIFLRDKKKQEFLRQ---ELKISTFDSFFSRILRAFALNLGL 123

Query: 154 TSHFAIADE--EQSKKLIEEAKKSTLASIM-----LDNNEELKKAFYEILE 197
           +S F  ++E  +     ++   +  L  +      L++N +  +      E
Sbjct: 124 SSDFDTSEEKLDVRAVFLKLLNRQELKDLAYYKVSLEDNHDFFEELENFYE 174


>gi|163754620|ref|ZP_02161742.1| putative helicase [Kordia algicida OT-1]
 gi|161325561|gb|EDP96888.1| putative helicase [Kordia algicida OT-1]
          Length = 1084

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 9/178 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWS 90
              +A+AGSGKT+ LV+  LR+LL +        +L +T T  A AEM  R+++ +  ++
Sbjct: 43  IIYNASAGSGKTYTLVKDYLRILLKSVQKDTYKQILAVTFTNKAVAEMKARIIQNLNLFA 102

Query: 91  ---HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                 +  +  E+ +     P +    K++ +L +IL      +V TI  F  ++++ F
Sbjct: 103 FDEASKNSPMFVELAEDLKLHPAQL-QQKSKDVLKSILHNYAFFEVSTIDKFTHSVIRTF 161

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             +  +  +F +  E  +  L+ EA    ++    D         Y + +  +D+  +
Sbjct: 162 AYDLKLPLNFEV--ELDTDALLNEAVDQLISKAGEDKLISDVLIEYALEKADDDKSWD 217


>gi|302335487|ref|YP_003800694.1| UvrD/REP helicase [Olsenella uli DSM 7084]
 gi|301319327|gb|ADK67814.1| UvrD/REP helicase [Olsenella uli DSM 7084]
          Length = 1176

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 42/204 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---------AHPSTLLCLTH 70
           T  +  +     R  +V+A AGSGK+  L +RV   L                 +L +T 
Sbjct: 6   TPGQAEIVHTLDRPLFVAAGAGSGKSSTLAERVAWALTPGSGAKGTAFLESLDQVLVITF 65

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+AAA E+  ++   +     L+D+ L+                                
Sbjct: 66  TRAAAEEIKEKIRARLRE-GGLADQALAV-----------------------------DS 95

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELK 189
             + TIHA C  I+++   +  I   F +  E+  K+++EEA    L  +  D     L 
Sbjct: 96  AWISTIHAMCSRILRRHAFDLGIDLGFEVLSEKDGKRMVEEAVDEVLRDVRYDEGYASLL 155

Query: 190 KAFYEILEISNDEDIETLISDIIS 213
           +AF          D +  + ++++
Sbjct: 156 RAFSP--RDRRGADAKGTLFEMVA 177


>gi|19552081|ref|NP_600083.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389744|ref|YP_225146.1| ATP-dependent helicase PcrA [Corynebacterium glutamicum ATCC 13032]
 gi|21323620|dbj|BAB98247.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325079|emb|CAF19560.1| ATP-DEPENDENT HELICASE PCRA [Corynebacterium glutamicum ATCC 13032]
          Length = 763

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 41/165 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           DLI     +Q  A +   S   + A AGSGKT +L +R+  L+     HP  +L +T T 
Sbjct: 12  DLIDGLNEQQRAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV +++   +                                        + 
Sbjct: 72  KAAAEMRERVSQLVGPVAE--------------------------------------RMW 93

Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I++Q       + ++F I D + S++L+    K  
Sbjct: 94  VATFHSVCVRILRQQAQLVEGLNTNFTIYDSDDSRRLLTMIAKDL 138


>gi|331091397|ref|ZP_08340236.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404261|gb|EGG83808.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 741

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 8   NTEQKEAVLHTEGPLLILAGAGSGKTRVLTHRISYLIEEKGVNPWNILAITFTNKAAGEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +I+   S                                        + V T H+
Sbjct: 68  RERVDKIVGFGSE--------------------------------------SIWVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            C  I+++        ++F I D +  K L+++  K
Sbjct: 90  MCVRILRRHIDRLGYDTNFTIYDTDDQKTLMKDVCK 125


>gi|281490502|ref|YP_003352482.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374320|gb|ADA63853.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis
           KF147]
          Length = 1203

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 35/230 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +        ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+
Sbjct: 4   VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   +                     +   SD ++AR L    L+      + T+
Sbjct: 64  ELRMRLERDLKK------------------ARQESSDENQARRL-TLALQNLSNADIGTM 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNN------EELK 189
            +F + + +      NI  +F I  D+ +S  + +E  +  + S +  ++      E+ +
Sbjct: 105 DSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSGDDGLNISKEKFE 164

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           +      +  N    + ++  I           F  +     K +E    
Sbjct: 165 ELIKNFSKDRNIAGFQKVVYTI---------YRFASATENPIKWLENQFL 205


>gi|309811913|ref|ZP_07705685.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185]
 gi|308434125|gb|EFP57985.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185]
          Length = 897

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +            + A AGSGKT +L  R+  L+ A  A P  +L +T T  AAAEM
Sbjct: 109 NPQQAQAVEHFGTPLLIVAGAGSGKTRVLTHRIAYLMAARGAQPGQILAITFTNKAAAEM 168

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   +                                        + V T H+
Sbjct: 169 RERVEQLVGGAA--------------------------------------NAMWVSTFHS 190

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++      + S F+I D   S++L+    +  
Sbjct: 191 ACVRILRREAKHVGLRSTFSIYDAADSQRLMAMVTRDL 228


>gi|229829264|ref|ZP_04455333.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM
           14600]
 gi|229792427|gb|EEP28541.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM
           14600]
          Length = 753

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 47/226 (20%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
            S+ +DL+++   ++           + A AGSGKT +L  R   L+      P  ++ +
Sbjct: 1   MSKILDLLNE--QQRDGVLTTEGPVLILAGAGSGKTRVLTHRAAYLIDEKGVAPYQIMAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+ ++++                                         
Sbjct: 59  TFTNKAAEEMRERINKLVSFGGE------------------------------------- 81

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             + V T H+ C  I+++F       S F I D +  K LI++  K     + +D     
Sbjct: 82  -AVWVATFHSSCVKILRRFADRVGYDSRFTIYDGDDQKSLIKDVCK----YLDIDTKIHK 136

Query: 189 KKAFYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRK 232
           +++F  ++  + +     ET + +   +    +    +  Y  R K
Sbjct: 137 ERSFLSVISHAKENLVGPETFLQEAAGDFNRTRQGQVYREYQARLK 182


>gi|298293080|ref|YP_003695019.1| UvrD/REP helicase [Starkeya novella DSM 506]
 gi|296929591|gb|ADH90400.1| UvrD/REP helicase [Starkeya novella DSM 506]
          Length = 833

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + E + A+D      V A AG+GKT +L  R+  +L    A PS +L +T T
Sbjct: 67  YLDGLNPEQREAVEATD--GPVLVLAGAGTGKTRVLTTRIAHILSLGLAWPSQILAVTFT 124

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                       E  G  
Sbjct: 125 NKAAREMKERIHAMVGE-------------------------------------EVEGMP 147

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+    ++++      + S F I D +   +L+++     L +  +D      + 
Sbjct: 148 WLGTFHSIGVRMLRRHAELVGLKSGFTILDTDDQIRLLKQ----LLRAENIDEKRWPARL 203

Query: 192 FYEILEISNDEDI 204
              I++   +  +
Sbjct: 204 LANIIDGWKNRGL 216


>gi|332045229|gb|EGI81422.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4]
          Length = 1052

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 8/179 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT+ LV+  L++L +   N     +L +T T  A  EM  R+LE++  +S   
Sbjct: 11  NASAGSGKTYTLVKEYLKILFSTSSNYQFKNILAITFTNKAVGEMKARILEMLNVFSSTH 70

Query: 94  DEILSAEIT---KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           +      +      + +  +K+   KA  +L TI+       + TI  F   +++ F  +
Sbjct: 71  NLNEPHAMFFDIAQELEMEHKALQKKAEIILQTIMHNYAAFDISTIDGFNHRLIRTFAHD 130

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
             +  +F +  E  +  ++ EA    +A    +         + I +  +D+  +  + 
Sbjct: 131 LKLPLNFEV--ELDTDSILSEAVDRLIAKAGANKALTKVLVDFAIEKADDDKSWDVALD 187


>gi|297192605|ref|ZP_06910003.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151430|gb|EFH31159.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 811

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 45/197 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +  +D +++   ++           + A AGSGKT +L  R+  LL     HP  +L +T
Sbjct: 63  AALLDGLNE--QQRAAVVHTGSPLLIVAGAGSGKTRVLTHRIAHLLGTRRVHPGQILAIT 120

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++   +                                       
Sbjct: 121 FTNKAAGEMKERVEQLVGPRA--------------------------------------N 142

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            + V T H+ C  I+++   +   TS F+I D   SK+L+    +     + LD  +   
Sbjct: 143 AMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMSLVCRD----LDLDPKKFPP 198

Query: 190 KAFYEILEISNDEDIET 206
           K+F   +    +E I+ 
Sbjct: 199 KSFSAKISNLKNELIDE 215


>gi|284036711|ref|YP_003386641.1| exodeoxyribonuclease V [Spirosoma linguale DSM 74]
 gi|283816004|gb|ADB37842.1| Exodeoxyribonuclease V [Spirosoma linguale DSM 74]
          Length = 1120

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 20/204 (9%)

Query: 37  SANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           S++AGSGKT+ L +  L+L L     + +   +L +T T AAA EM +R+L+ ++  +  
Sbjct: 6   SSSAGSGKTYTLTKEYLKLALRPGEKDDYFRRILAVTFTNAAANEMKNRILKNLSEMAGK 65

Query: 93  SDEILSAEITKIQGKKPNKSDM---------SKARHLLITILETPGGLKVQTIHAFCEAI 143
            +  L  E+       P  SD+         S+A  +  TIL       V TI +F + +
Sbjct: 66  KESPLLNELVTELYDTPPGSDLFEDKKTELCSRASSVFRTILHRYADFSVTTIDSFTQRV 125

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-----EI 198
           +  F  E  +   F +  E  + +++E A  + +     D  EE+     E       E 
Sbjct: 126 VMAFTDELGLPYSFDV--EMDTDEVLELAIDNLIEKAGTDEMEEITTILSEYYTHTAAEG 183

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
            +   +  L+ +   N T+ +   
Sbjct: 184 KSWNQLPELLKEFGRNLTSDQFYE 207


>gi|154245373|ref|YP_001416331.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154159458|gb|ABS66674.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 817

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ  A +       V A AG+GKT +L  RV  +L    A+PS +L +T T 
Sbjct: 38  DYLNGLNPEQREAVETLDGPLLVLAGAGTGKTRVLTARVAHILSQGRAYPSQILVVTFTN 97

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                       +  G   
Sbjct: 98  KAAREMKDRIHAMVGD-------------------------------------QIEGMPW 120

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    I+++      + S F I D +   +L+++     LA+  +D      +  
Sbjct: 121 LGTFHSIGVRILRRHHELVGLKSGFTILDTDDQIRLLKQ----LLAAENIDEKRWPARLL 176

Query: 193 YEILEISNDEDI 204
              ++   +  +
Sbjct: 177 ASTIDSWKNRGL 188


>gi|290958050|ref|YP_003489232.1| ATP-dependent DNA helicase II [Streptomyces scabiei 87.22]
 gi|260647576|emb|CBG70681.1| putative ATP-dependent DNA helicase II [Streptomyces scabiei 87.22]
          Length = 836

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           + +  +D ++    ++           + A AGSGKT +L  R+  LL     HP  +L 
Sbjct: 65  DAAALLDGLNDN--QRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLGERRVHPGQILA 122

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++   +                                     
Sbjct: 123 ITFTNKAAGEMKERVEQLVGPRA------------------------------------- 145

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + V T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 146 -NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193


>gi|225868711|ref|YP_002744659.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp.
           zooepidemicus]
 gi|251764568|sp|C0MGY6|ADDA_STRS7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|225701987|emb|CAW99551.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi
           subsp. zooepidemicus]
          Length = 1214

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 30/236 (12%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            Q+     D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 16  LQQEEALSDKTHKRTAQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGIPVDRL 75

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+ + +      + +                    + +  L   L
Sbjct: 76  FISTFTVKAATELIERIEKKLHTAIAETQDY-------------------QLKAYLNDQL 116

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           +      + T+ AF + ++ Q      I+ HF I  D+ +   L  E  +      M   
Sbjct: 117 QALSQADIGTMDAFAQKLVHQHGYVLGISPHFRIIQDKAEQDILKREVFRQVFEDYMSQT 176

Query: 185 NEELKKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           +    KAF +++   S      +   +I+ +     +  F  S       + +   
Sbjct: 177 D---NKAFIQLVQNFSGRRKDSSAFREIVDS-----IYAFSQSTANPSSWLAEVFL 224


>gi|56696067|ref|YP_166421.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3]
 gi|56677804|gb|AAV94470.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3]
          Length = 779

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 77/195 (39%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  +D ++  + E +   D      + A AG+GKT  L  R++ LL+   A P+ +L +T
Sbjct: 6   APYLDDLNPAQREAVERLD--GPVLMLAGAGTGKTKALTARIVHLLMTGRARPNEILAVT 63

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM +RV  ++   +                                      G
Sbjct: 64  FTNKAAREMKNRVGRLLGQPAE-------------------------------------G 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+ C  ++++     ++ S+F I D +   +L+++  +    +  +D+     
Sbjct: 87  MPWLGTFHSICVKLLRRHAELVDLKSNFTILDTDDQLRLLKQLVQ----AANIDDKRWPA 142

Query: 190 KAFYEILEISNDEDI 204
           +    I++   ++ +
Sbjct: 143 RLLANIIDGWKNKAL 157


>gi|255535683|ref|YP_003096054.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium
           3519-10]
 gi|255341879|gb|ACU07992.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium
           3519-10]
          Length = 775

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D +      Q  A         V A AGSGKT +L  R+  L+     P  +L LT T 
Sbjct: 1   MDYLKGLNEAQYEAVTTLEGPLMVLAGAGSGKTRVLTMRIAHLITNLVDPFNILALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++                            S+AR L            
Sbjct: 61  KAAKEMKERIAKVVGQ--------------------------SEARSL-----------W 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++         S+F I D + S  +I +  K  
Sbjct: 84  MGTFHSVFARILRSEAHYLGYPSNFTIYDTQDSLNVIRKVLKEL 127


>gi|139474037|ref|YP_001128753.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes str. Manfredo]
 gi|251764552|sp|A2RFA8|ADDA_STRPG RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|134272284|emb|CAM30537.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes str. Manfredo]
          Length = 1210

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 16  LQENERYSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 75

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 76  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 116

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 117 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 176

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 177 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 227


>gi|148273735|ref|YP_001223296.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831665|emb|CAN02634.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 816

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 41/192 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  + E ++   P     + A AGSGKT +L  R+  L+ +  A PS +L +T T
Sbjct: 34  LLEGLNPEQREAVVYRGPA--LLIVAGAGSGKTRVLTHRIASLIESREAWPSQILAITFT 91

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++   S                                       G+
Sbjct: 92  NKAAAEMRERVESLLGQASE--------------------------------------GM 113

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++       T +F I D   S+ LI+   K   A  +      +   
Sbjct: 114 WISTFHSACVRILRREAEAFGFTQNFTIYDSADSRVLIKRIIKQLDADTLGFTVSSVSGR 173

Query: 192 FYEILEISNDED 203
             ++    +D D
Sbjct: 174 ISKLKNELSDAD 185


>gi|93005845|ref|YP_580282.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
 gi|92393523|gb|ABE74798.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
          Length = 733

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 21/203 (10%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D  S+  + QLLA+        V A AGSGKT  L  R   L+     P  +L LT T+
Sbjct: 58  VDYASELNANQLLAATTIEGKVLVIAGAGSGKTKTLTYRTSYLIENGVSPKEILLLTFTR 117

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R   ++ +    +  +    +     K    +D++                 
Sbjct: 118 KAANEIKGRARALLASTPSFAQRLNEDLVEDKLPKNKALNDITS---------------- 161

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKA 191
             T H+FC  +++Q+     I   F I D   S+  I+   K       + N     KK 
Sbjct: 162 -GTFHSFCNMLLRQYSGLLGINPRFTILDTGDSEDAIDLIHKEKKYPTKITNQAFPRKKT 220

Query: 192 FYEILEISNDEDIETLISDIISN 214
              I   S +  I   I D+I N
Sbjct: 221 LQNIFSTSRNRRIH--IRDLIEN 241


>gi|260435507|ref|ZP_05789477.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109]
 gi|260413381|gb|EEX06677.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109]
          Length = 794

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 18/172 (10%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D ++   +++           V A AGSGKT  L  R+  L+      P+ +L +T T 
Sbjct: 4   LDGLND--AQRRAVDHYQGPLLVVAGAGSGKTRALTHRIAHLIGEHGVDPAQILAVTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++      S             ++ ++S + +         E    L 
Sbjct: 62  KAAREMKERLELLLAQKLAQSQYGQPWSTLPAVEQRQSRSRIYR---------EVTKELW 112

Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
           + T HA    +++    +F     +  T  F+I DE  ++ L++E     L 
Sbjct: 113 IGTFHALFARMLRYDIDKFQDSEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|182412468|ref|YP_001817534.1| UvrD/REP helicase [Opitutus terrae PB90-1]
 gi|177839682|gb|ACB73934.1| UvrD/REP helicase [Opitutus terrae PB90-1]
          Length = 1109

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 10/214 (4%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
               + A+AGSGKT+ L  R +RLL   A P  ++ LT T+ AA E    +L  +   + 
Sbjct: 5   GHVMILASAGSGKTYALTNRFVRLLALGAAPERIVALTFTRKAAGEFFDEILNKLARAAS 64

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            +           +  +P     ++   LL  +++    L++ TI  F   I + FPLE 
Sbjct: 65  DAAYARQ---LAAEIGRPAAMGTAEFLALLRRMVDAMHRLRLGTIDGFFARIARNFPLEL 121

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLA---SIMLDNNEELKKAFYEILEISNDEDIETLI 208
            +   F + +E  ++       +         + D   E  +AF        ++ +   +
Sbjct: 122 GLAGEFELLEEHAARMERSRVLRQLFERPTDGLADAQREFIEAFKRATFGVEEKRLGAQL 181

Query: 209 SDIISNRTALKLIFFFFSYLW---RRKIIEKSLW 239
              +     +  +       W   RR     S W
Sbjct: 182 DAFLDEHQEI-FLNASARDAWGDARRIWRNGSRW 214


>gi|302187828|ref|ZP_07264501.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae 642]
          Length = 727

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L+ +  A P ++L +T T  AAAEM H
Sbjct: 15  AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                        +P G+   T H   
Sbjct: 75  RIEQLMGI--------------------------------------SPAGMWGGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +   F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|282877935|ref|ZP_06286744.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC
           35310]
 gi|281299936|gb|EFA92296.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC
           35310]
          Length = 810

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL+SQ   EQ  A         V A AGSGKT +L  ++  L+     P ++L LT T  
Sbjct: 3   DLLSQLNQEQRSAVTYNDGPQLVIAGAGSGKTRVLTYKIAYLVQQGMQPWSILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ ++I                                       ET   +++
Sbjct: 63  AANEMKQRIAQLIGQ-------------------------------------ETARYIQM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I DE  S+ LI+   K  
Sbjct: 86  GTFHSIFSRILRIEADAIGYTSGFTIYDESDSRSLIKTIIKEM 128


>gi|320546489|ref|ZP_08040804.1| exonuclease RexA [Streptococcus equinus ATCC 9812]
 gi|320448874|gb|EFW89602.1| exonuclease RexA [Streptococcus equinus ATCC 9812]
          Length = 1208

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 27/218 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R++  +L       L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSSGNNILVSASAGSGKTFVMVERIIDKILRGVTVDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+    ++ +                   +  +  L   L       + T+ AF
Sbjct: 89  ERLEKKISKVLQVTKD-------------------NDTKTYLNEQLLGLQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ Q+     I+  F I  D+ +   +  E      +  ML  N+ + +        
Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTDKSEQDLVKNEVFADLFSDYMLGENQAIFRKLVR--NF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           S +    +   +I+      K+  F  +    +K + +
Sbjct: 188 SGNRKDSSAFREIV-----YKIYDFSQATDNPKKWMSE 220


>gi|296121114|ref|YP_003628892.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296013454|gb|ADG66693.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 845

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 42/166 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            ++ +D +  T S+            V A  GSGKT ++ +R+ RL+    HP+ +L +T
Sbjct: 1   MTQLLDDL--TPSQAAAVEHFEGPLLVLAGPGSGKTRVVTRRIARLIERRVHPAEILAIT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM+ RV  +I                                           
Sbjct: 59  FTNKAAREMAERVEHLIPGR---------------------------------------- 78

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            + V T H FC  I++Q+     +  +F+I D +     ++EA K 
Sbjct: 79  RVAVSTFHKFCARILRQYGGVVGLKPNFSILDVKDQDAALKEAVKE 124


>gi|297201841|ref|ZP_06919238.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
 gi|197717318|gb|EDY61352.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
          Length = 826

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +  ++ +++   ++           + A AGSGKT +L  R+  LL   N HP  +L +T
Sbjct: 66  AALLEGLNEN--QRAAVVHSGTPLLIVAGAGSGKTRVLTHRIAHLLGERNVHPGQILAIT 123

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++   +                                       
Sbjct: 124 FTNKAAGEMKERVEQLVGPRA--------------------------------------N 145

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 146 AMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 192


>gi|160893045|ref|ZP_02073833.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50]
 gi|156865128|gb|EDO58559.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50]
          Length = 781

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 43/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +      + L          + A AGSGKT ++  RV  L+     +P  +L +T T  A
Sbjct: 1   MAGLNDMQDLACRHVDGPLLILAGAGSGKTRVITHRVAYLMDEIGVNPYNILAITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV  I+   +                                        + V 
Sbjct: 61  AAEMRDRVNNIVGEGAE--------------------------------------RVWVS 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++F       ++F I D +  K     A K+ L  + +D  +  +K F  
Sbjct: 83  TFHSLCVRILRRFSDRLGYATNFNIYDSDDQKS----AVKNILKELKIDPKKYPEKMFMA 138

Query: 195 ILEISNDE 202
            +  + + 
Sbjct: 139 EISNAKER 146


>gi|323138754|ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242]
 gi|322396001|gb|EFX98537.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242]
          Length = 1130

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +    + +   S   RS  V A AGSGKT ++  R+  +L     P ++  +T T+ AA+
Sbjct: 8   LKDDGARRDAISLHDRSILVEAGAGSGKTAVMAGRIAAMLAEGVAPRSIAAVTFTELAAS 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV E +   + LS   ++ E+         ++     R  L         +   TI
Sbjct: 68  ELLSRVREFV---ADLSAGTIATELRVALPDGLTQAH----RDNLAAASAAIDEITCSTI 120

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           H FC+ +++ +P EA+I     + D  Q+     E     L  
Sbjct: 121 HGFCQRLIKPYPAEADIDPGAGVMDRNQADLTFLEIVDGWLRE 163


>gi|284029231|ref|YP_003379162.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836]
 gi|283808524|gb|ADB30363.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836]
          Length = 773

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 40/163 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L+     +Q  A     +   V A AGSGKT +L +R+  LL A +AHP ++L +T T  
Sbjct: 27  LLEGLNPQQRAAVVHAGKPLLVVAGAGSGKTRVLTRRIAYLLAARDAHPGSILAITFTNK 86

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV+E++   + L                                      + V
Sbjct: 87  AAAEMRERVVELVGPRAKL--------------------------------------MWV 108

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C  I+++      I+S F+I D+  S++L+    +  
Sbjct: 109 STFHSSCVRILRRDIKRFGISSTFSIYDDTDSRRLMTLVCREL 151


>gi|260462130|ref|ZP_05810374.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
 gi|259031990|gb|EEW33257.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
          Length = 899

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 42/191 (21%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72
           D +     EQ LA + T     V A AG+GKT +L  R+  +L      PS +L +T T 
Sbjct: 40  DYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGKAFPSQILAVTFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I   +                                      G   
Sbjct: 100 KAAREMKQRIGILIGEGNVE------------------------------------GMPW 123

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++    A + S F I D +   +LI++     + +  LD+     K F
Sbjct: 124 LGTFHSIGVKLLRRHAELAGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 179

Query: 193 YEILEISNDED 203
            ++++   ++ 
Sbjct: 180 AQMIDGWKNKG 190


>gi|218289816|ref|ZP_03494016.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240107|gb|EED07292.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 705

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 76/211 (36%), Gaps = 49/211 (23%)

Query: 12  ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           +  D++     EQ  A +  +    V A AGSGKT +L +R+  L+  A      +L +T
Sbjct: 3   DVTDILRGLNPEQRDAVTTTSGPLLVVAGAGSGKTSVLTRRIAYLIAHAGVAVHEILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ ++I                                           
Sbjct: 63  FTNKAAREMKTRIRDLIG--------------------------------------HRAD 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            L + T H+ C  I+++         +F I D E  + L+++     L  +  D      
Sbjct: 85  DLWMGTFHSICVRILRREADRLGYQPNFTILDSEDQESLVQQC----LLDLGYDLKAHDA 140

Query: 190 KAFYEILEISNDEDIETLI-----SDIISNR 215
           ++    +    +E    ++     SD+I++R
Sbjct: 141 RSIKHRISQWKNEGAHRVVNESNPSDLIADR 171


>gi|170695890|ref|ZP_02887030.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170139188|gb|EDT07376.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 787

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMSRLSALLPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A + + F I D          A K  +  + +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHHRDAALPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185


>gi|326336392|ref|ZP_08202563.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691566|gb|EGD33534.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 773

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++ + +    Q         +  V A AGSGKT +L  R+  L+     P  +L LT T 
Sbjct: 1   MNYLDELNEAQRAPVVHKDGAVMVIAGAGSGKTRVLTYRIAYLMQQGVDPFNILALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  I+                            S+AR+L            
Sbjct: 61  KAAREMKERIGRIVGQ--------------------------SEARNL-----------W 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I+++          F I D++ S++LI    K  
Sbjct: 84  MGTFHSVFARILREEAYRLGFPRDFTIYDQQDSQRLISAIIKEM 127


>gi|260885683|ref|ZP_05735545.2| ATP-dependent helicase [Prevotella tannerae ATCC 51259]
 gi|260851937|gb|EEX71806.1| ATP-dependent helicase [Prevotella tannerae ATCC 51259]
          Length = 1084

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 6/178 (3%)

Query: 24  QLLASDPTRSAWV-SANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +  A D   S  +  A+AGSGKT  L Q  L +LL        +L +T T  A  EM  R
Sbjct: 18  RDAAKDMKESLIIYKASAGSGKTFTLAQNYLVQLLSKGGSHRYILAVTFTNKATTEMKQR 77

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +L  +   +   D   +  + +  G+  +     +A+  L  IL      +V TI  F +
Sbjct: 78  ILAYLYDLAEGRDNDFTRALAERLGQPADLK--QRAQAALDGILHDYDHFQVMTIDKFFQ 135

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            ++     E  +++++ I  E   +K ++EA    L +I    +++L     +++E  
Sbjct: 136 QLLSNLAHELGLSANYRI--ELDDRKAVDEAVDFLLDAIDERADKKLIGWIEDLIEDR 191


>gi|312279028|gb|ADQ63685.1| ATP-dependent helicase/nuclease subunit A [Streptococcus
           thermophilus ND03]
          Length = 1217

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L ++        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +T                   K   ++   + R  L   +   G   + T+ AF
Sbjct: 89  ERLEKRLT-------------------KHLGQAKTDEERAFLSDQIAKIGTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196
            + ++ Q+     ++  F I  +  +   +  E         M   + +L +        
Sbjct: 130 TQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
                +    L+ DI           F  +     K + ++L 
Sbjct: 190 HSKTSKAFRDLVYDI---------YSFSQATADPEKWLRQNLL 223


>gi|289641103|ref|ZP_06473271.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca
           glomerata]
 gi|289509044|gb|EFD29975.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca
           glomerata]
          Length = 822

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++    ++           V A AGSGKT +L  R+  LL A       +L +T T
Sbjct: 50  LLDGLN--PQQRAAVVHTGSPLLVVAGAGSGKTRVLTNRIAYLLAARGVRAGEILAITFT 107

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++ A +                                        +
Sbjct: 108 NKAANEMKERVAALVGARTR--------------------------------------AM 129

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I++        TS F+I D   +++LI    +  
Sbjct: 130 WVSTFHSACVRILRSHAKRIGFTSGFSIYDAADAQRLITLVARDL 174


>gi|319902365|ref|YP_004162093.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108]
 gi|319417396|gb|ADV44507.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108]
          Length = 763

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 39/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
             + I  +++ + E +L +D      V A AGSGKT +L  ++  LL     P  +L LT
Sbjct: 1   MPDYIQELNEGQREAVLYND--GPLLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+   +                             +AR L         
Sbjct: 59  FTNKAAREMKERIAHQVGT--------------------------ERARRL--------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+    I+         T  F I D   SK L+    K  
Sbjct: 84  --WMGTFHSMFLRILHVEAPHLGFTPQFTIYDTADSKSLLRSIIKEM 128


>gi|167587403|ref|ZP_02379791.1| UvrD/REP helicase [Burkholderia ubonensis Bu]
          Length = 539

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P+T+L +T T 
Sbjct: 3   DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMMARLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  +    +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTSDQLS----AIKRLMKGANIDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     D     NR  +++   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVEIYQAYDQQCQREGVVD 185


>gi|295132152|ref|YP_003582828.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87]
 gi|294980167|gb|ADF50632.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87]
          Length = 1040

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 8/175 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  LV+  L LL  +        +L +T T  A  EM  R++E + A++   
Sbjct: 9   NASAGSGKTFTLVKSYLSLLFKSGKTDTYKNILAITFTNKAVHEMKTRIVESLYAFTKKP 68

Query: 94  DEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               S  + +   K+     +    K+  +L  I+      +V TI  F   +++ F  +
Sbjct: 69  VPESSKALLEAVAKETAHSKEEIQEKSVAILKNIIHNYAAFEVSTIDGFTHRVLRTFAKD 128

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             +  +F +  E  + K++ EA    +     D         + + +  +D+  +
Sbjct: 129 LGLPVNFEV--ELDTDKILNEAVDRLINRTGKDEKLTKVLVDFSLSKADDDKSWD 181


>gi|159185029|ref|NP_355024.2| DNA helicase II [Agrobacterium tumefaciens str. C58]
 gi|159140303|gb|AAK87809.2| DNA helicase II [Agrobacterium tumefaciens str. C58]
          Length = 824

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +S    EQ  A +       V A AG+GKT +L  R+  +L    A+PS +L +T T 
Sbjct: 51  DYLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTN 110

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 111 KAAREMKERIGVLVGGAVE-------------------------------------GMPW 133

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++      + S F I D +   +LI++     + +  LD+     K F
Sbjct: 134 LGTFHSIGVKLLRRHAELIGLKSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 189

Query: 193 YEILEISNDEDI 204
             +++   ++ +
Sbjct: 190 AGMIDGWKNKGL 201


>gi|239825841|ref|YP_002948465.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70]
 gi|239806134|gb|ACS23199.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70]
          Length = 732

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +  + +Q           + A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 9   LANLNEQQQAAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMKERVQGLLGGAAE--------------------------------------EIWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F+I D      +++   K 
Sbjct: 91  TFHSMCVRILRRDIDRIGIDRNFSILDTTDQLSVLKNILKE 131


>gi|78776291|ref|YP_392606.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
 gi|78496831|gb|ABB43371.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
          Length = 903

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 11/191 (5%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +    A+AGSGKT +LV R L LL   A  S +L LT T  AA+EM  R++  +    H 
Sbjct: 5   NLAYEASAGSGKTFMLVVRYLSLLFMGAKASRILALTFTNKAASEMQERIIATLEELEHR 64

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +      +T +  +      +   + +L   L +    K+ TI +F   I+++F L A+
Sbjct: 65  GELDEILRVTGLSIEYL----LENRQRVLDEFLNSHT--KIMTIDSFFTKILRKFSLYAS 118

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +   F+    +   KL+       L  + + N +E   + + +       DI  L+ +  
Sbjct: 119 LMPDFSTFSSQHELKLLS----RFLKEVSITNQKERLISLW-LSSNKRLSDIFELLDEFY 173

Query: 213 SNRTALKLIFF 223
                LK I F
Sbjct: 174 VKFAELKHIEF 184


>gi|329113313|ref|ZP_08242094.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001]
 gi|326697138|gb|EGE48798.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001]
          Length = 783

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 44/191 (23%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +++   EQ  A + T     V A AG+GKT +L  R   +LL   A P  +L +T T  
Sbjct: 63  YLARLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLTGRAKPWQILTVTFTNK 122

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++ + +                                       GL +
Sbjct: 123 AAREMHERIGLLLGSPAE--------------------------------------GLWL 144

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T HA C  ++++      +T  F I D +   +L+++     +A   +D          
Sbjct: 145 GTFHALCARMLRRHAEYVGLTQSFTILDTDDQLRLLKQ----VMAPWQIDIKRWPAPGLL 200

Query: 194 EILEISNDEDI 204
            +++   D  +
Sbjct: 201 GVIQRWKDRGL 211


>gi|71006344|ref|XP_757838.1| hypothetical protein UM01691.1 [Ustilago maydis 521]
 gi|46097274|gb|EAK82507.1| hypothetical protein UM01691.1 [Ustilago maydis 521]
          Length = 1176

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 41/175 (23%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHT 71
           L S + S+   A+ P  +   + A  GSGKT +L  RV  L+L  A+   P  +L +T T
Sbjct: 43  LESLSPSQYAAATHPPTTCLQILAGPGSGKTRVLTSRVAWLILDPANKLRPEDILVVTFT 102

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R++++I                                       E    L
Sbjct: 103 NKAANEMKMRLVKLIGK-------------------------------------ERVDNL 125

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            + T H+ C   ++++    +++++F+I D E +K++++   K   A +  +N E
Sbjct: 126 VIGTFHSVCARYLRKYGRLISLSNNFSIIDSEDAKRMLKSILKELKAELEKENLE 180


>gi|326804259|ref|YP_004322077.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650562|gb|AEA00745.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 818

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 41/168 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLC 67
             ++ ID ++    ++           + A AGSGKT +L  R+  LL   A  P  +L 
Sbjct: 3   HINQLIDGLN--PQQKAAVQYTEGPLLIMAGAGSGKTRVLTHRMAYLLEEKAVRPWNILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV  ++                                       E 
Sbjct: 61  ITFTNKAANEMKERVKNLVG--------------------------------------EA 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + V T H+ C  I+++      ++  F IAD  + + LI+   K 
Sbjct: 83  ADTMWVSTFHSMCVRILRREAEAIGLSRSFTIADPAEQQSLIKRIMKD 130


>gi|281420327|ref|ZP_06251326.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205]
 gi|281405629|gb|EFB36309.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205]
          Length = 836

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL++     Q  A +     + V A AGSGKT +L  ++  LL     P +++ LT T 
Sbjct: 1   MDLLNDLNEAQRAAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLSQGMKPWSIMALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++                              A+HL +          
Sbjct: 61  KAAREMKERIGKLVGN--------------------------DLAQHLYM---------- 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             T H+    I++         ++F I DE  S+ LI+   K  
Sbjct: 85  -GTFHSIFSRILRAEAEHIGFNNNFTIYDESDSRSLIKAIVKEM 127


>gi|39935284|ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [Rhodopseudomonas
           palustris CGA009]
 gi|39649136|emb|CAE27656.1| possible ATP-dependent exodeoxyribonuclease (subunit A)
           [Rhodopseudomonas palustris CGA009]
          Length = 1133

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 7/171 (4%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +    + +       RS  V A AGSGKT ++  R+  +L     P ++  +T T+ A
Sbjct: 6   NALRDDAARRTAIGVHDRSILVEAGAGSGKTAVMAGRIAAMLAEGIAPKSIAAVTFTELA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + +   +  +       I    G  PN S        L         +   
Sbjct: 66  ASELLIRVRDFVADLAAGTIPT-ELRIAFPDGLSPNHS------ANLAAAASVIDEITCS 118

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           TIH FC+ +++ +P+EA+I    ++ D  Q+     E  ++ L   +    
Sbjct: 119 TIHGFCQRLIKPYPVEADIDPGASVMDRNQADLAFIEIVETWLREQLSGGE 169


>gi|291461061|ref|ZP_06026707.2| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC
           33693]
 gi|291379194|gb|EFE86712.1| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC
           33693]
          Length = 739

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 41/168 (24%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           Q +   ++ +++ + E   AS    S  + A AGSGKT  +  R+  ++      P ++L
Sbjct: 2   QMNLNLLEKLNEKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSIL 59

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  RV +++   +                                    
Sbjct: 60  AVTFTNKAAKEMRERVEDLVGEVAKSC--------------------------------- 86

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
                 + T H+F   +++ +  E     +F I D +  K++I+   K
Sbjct: 87  -----TISTFHSFGMRLLRMYAAEVGYNPNFTIYDTDDQKRIIKAILK 129


>gi|254392029|ref|ZP_05007220.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC
           27064]
 gi|294814551|ref|ZP_06773194.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|326442941|ref|ZP_08217675.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705707|gb|EDY51519.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC
           27064]
 gi|294327150|gb|EFG08793.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 825

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 44/193 (22%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+     +Q  A         + A AGSGKT +L  R+  LL     HP  +L +T T  
Sbjct: 70  LLEGLNEQQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLATRGVHPGQILAITFTNK 129

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   +                                        + V
Sbjct: 130 AAGEMKERVEQLVGPRAQ--------------------------------------AMWV 151

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++   +   TS F+I D   SK+L+    +     + LD  +   K+F 
Sbjct: 152 LTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRD----LDLDPKKFPPKSFS 207

Query: 194 EILEISNDEDIET 206
             +    +E I+ 
Sbjct: 208 AKISNLKNELIDE 220


>gi|15895932|ref|NP_349281.1| ATP-dependent DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15025705|gb|AAK80621.1|AE007765_3 ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
           acetobutylicum ATCC 824]
 gi|325510084|gb|ADZ21720.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
           acetobutylicum EA 2018]
          Length = 756

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL      EQ   A+       + A AGSGKT +L  R+  ++     +PS +L +T T
Sbjct: 1   MDLKKLLNEEQYKAATKIDGPILILAGAGSGKTRVLTYRIAHMVKDLEIYPSQILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  +I                                            +
Sbjct: 61  NKAAKEMKDRVKALIGG-------------------------------------NEIDNM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+ C  I+++   +     +F I D +  K L+ E  K  
Sbjct: 84  WISTFHSCCVRILRREIDKIGYNKNFTIYDSDDQKVLMRECIKQV 128


>gi|325269817|ref|ZP_08136427.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608]
 gi|324987790|gb|EGC19763.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608]
          Length = 843

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 78/206 (37%), Gaps = 44/206 (21%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +L+S     Q  A +     + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 9   ELLSALNESQRKAVEYCAGPSLVIAGAGSGKTRVLTYKIAYLLEKGLKPWNILALTFTNK 68

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +I TA                           +AR L +           
Sbjct: 69  AAKEMKERIAQITTAG--------------------------EARRLYM----------- 91

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++          +F I DE  S+ LI    KS + ++ LD       A +
Sbjct: 92  GTFHSIFARILRSEGELIGFGHNFTIYDETDSRSLI----KSIVKALGLDEKTYKPAAVH 147

Query: 194 EILEISNDEDIETLISDIISNRTALK 219
             + ++ +  I    S+   +R AL 
Sbjct: 148 NFISMAKNRLITA--SEYAEDRAALN 171


>gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997258|gb|ABB16157.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 718

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 49/226 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +   +++   +       V A AG+GKT +L  R+  LL    A+P  +L +T T  A
Sbjct: 5   LATLNPAQREAVTHTHGPLLVLAGAGTGKTRVLTFRIAHLLYRKMAYPHEILAITFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  +I+  +                                        + + 
Sbjct: 65  AREMKERVERLISGSAR--------------------------------------EIWIS 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+F   I++    +   +  F + DEE   ++I+E     L  + +D+     KA   
Sbjct: 87  TFHSFALRILRNDIEKLGFSRDFTVYDEEDQLQVIKEC----LKELNIDDKRFAPKAIAY 142

Query: 195 ILEISND-----EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            +  + D             D+   + A+ +   +   L +   ++
Sbjct: 143 HISSAKDKLISPRQYRDDADDLFKEKVAI-IYNMYQEKLNKNNALD 187


>gi|237740038|ref|ZP_04570519.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31]
 gi|229422055|gb|EEO37102.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31]
          Length = 735

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++L+ +   +Q   AS    S  + A AGSGKT  +  R+  ++      P ++L +T T
Sbjct: 1   MNLLEKLNEKQREAASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++   +                                         
Sbjct: 61  NKAAKEMRERVEDLVGEVAKSC-------------------------------------- 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + T H+F   +++ +  E   + +F I D +  K++I+   K
Sbjct: 83  TISTFHSFGMRLLRMYAAEVGYSPNFTIYDTDDQKRIIKAILK 125


>gi|304313385|ref|YP_003812983.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1]
 gi|301799118|emb|CBL47361.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1]
          Length = 738

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 45/199 (22%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPST 64
           S    +  +D ++  +  Q ++SD  R   V A AGSGKT +LV R+  L +     P  
Sbjct: 4   SALTPASLLDSLNPAQR-QAVSSDANR-LLVLAGAGSGKTRVLVHRIAWLVIARGLSPRG 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AAAEM HR+  ++                                      
Sbjct: 62  ILAVTFTNKAAAEMRHRLQTLLQIPQ---------------------------------- 87

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
               G + V T H     +++    EA +   F + D +  ++++    K  +  + L+ 
Sbjct: 88  ----GAMWVGTFHGIAHRLLRLHWQEAKLPEQFQVMDSDDQQRVL----KRVMREMQLEE 139

Query: 185 NEELKKAFYEILEISNDED 203
                +     +    DE 
Sbjct: 140 ARWPVRQAQSYINSHKDEG 158


>gi|300856842|ref|YP_003781826.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436957|gb|ADK16724.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 746

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL S    EQ   A        + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKSLLNKEQYEAAVYVDGPLLILAGAGSGKTRVLTYRIAHMIKDMNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ E++                                       +   G+
Sbjct: 61  NKAAGEMKDRIKELVG--------------------------------------DEVDGM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +FAI D    K LI++  K  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYNKNFAIYDSYDQKVLIKQCMKEL 127


>gi|56808113|ref|ZP_00365902.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Streptococcus pyogenes M49 591]
          Length = 405

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|21910050|ref|NP_664318.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes MGAS315]
 gi|81479324|sp|Q8K815|ADDA_STRP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|21904241|gb|AAM79121.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes MGAS315]
          Length = 1222

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 95/239 (39%), Gaps = 30/239 (12%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERYSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFM--- 185

Query: 185 NEELKKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           N++   AF  ++   S +    +   +++          F  S    +  ++++  S A
Sbjct: 186 NQKEAPAFRALVKNFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|228474096|ref|ZP_04058837.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274610|gb|EEK13451.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC
           33624]
          Length = 772

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++ +++    Q         +  V A AGSGKT +L  R+  L+     P  +L LT T 
Sbjct: 1   MNYLNELNEAQRAPVVHKDGAVMVIAGAGSGKTRVLTYRIAYLIQQGVDPFNILALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  I+                            S+AR+L            
Sbjct: 61  KAAREMKERIGRIVGP--------------------------SEARNL-----------W 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I+++   +      F I D++ S++LI    K  
Sbjct: 84  MGTFHSVFARILREEASKLGFPRDFTIYDQQDSQRLISAIIKEM 127


>gi|32474455|ref|NP_867449.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
 gi|32444993|emb|CAD74995.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
 gi|327539457|gb|EGF26072.1| ATP-dependent DNA helicase PcrA [Rhodopirellula baltica WH47]
          Length = 671

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 28/164 (17%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           T D+      +       +    V A AG+GKT ++  R+  L+     P  +L +T T 
Sbjct: 3   TFDVAGLNPPQAKAVQTLSGPLLVLAGAGTGKTRVVTFRIANLIKHGVKPDRILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV E++   +        A                            P    
Sbjct: 63  KAAGEMQDRVGELLGYKNQKRKRGQKA----------------------------PPKPT 94

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T HA C  I+++        + FAI D    + L     +  
Sbjct: 95  ISTFHAQCVRILREHAPAIGFPATFAIYDRSDQESLARAILREL 138


>gi|89097085|ref|ZP_01169976.1| PcrA [Bacillus sp. NRRL B-14911]
 gi|89088465|gb|EAR67575.1| PcrA [Bacillus sp. NRRL B-14911]
          Length = 746

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 45/195 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + ++ ++  +   + A+D      + A AGSGKT +L  R+  L++    +P  +L +T 
Sbjct: 7   KLLNGLNAQQQNAVKATD--GPLLIMAGAGSGKTRVLTHRIGYLMVEKGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMRERIQNMMGGAA--------------------------------------DD 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + + T H+ C  I+++         +F I D        +   K+ L    LD  +   +
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGFNRNFTILDTTDQ----QSVIKAILKEKNLDPKKYDPR 142

Query: 191 AFYEILEISNDEDIE 205
           A    +  + +E I+
Sbjct: 143 AILGSISSAKNELID 157


>gi|327404466|ref|YP_004345304.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
 gi|327319974|gb|AEA44466.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
          Length = 1049

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 12/191 (6%)

Query: 28  SDPTRSAW-VSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRV 82
           SD ++    V+A+AGSGKT+ LV+  LRLLL      A    ++ +T T  A+ EM  R+
Sbjct: 3   SDVSKPLLIVNASAGSGKTYNLVRNYLRLLLTEEFDRAEIGQIMAMTFTNKASIEMKSRI 62

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCE 141
           +  +   +H  +E     I   Q    +   +  KA+ +L  IL       V TI  F  
Sbjct: 63  MSDLNKLAHGKEESRDYLIETAQFVGASPESIQKKAQIVLSKILHQYEDFNVMTIDKFNL 122

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI----LE 197
            +++ F  + ++  +F I        ++E+A    L +I   N  +L +         LE
Sbjct: 123 KLIRSFSKDLDLPDNFEI--SLDDSLVLEKAIDELLNNIDSKNQTKLYQLALNFAKSNLE 180

Query: 198 ISNDEDIETLI 208
             ND +++ ++
Sbjct: 181 DENDWNLKKIL 191


>gi|307721871|ref|YP_003893011.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
 gi|306979964|gb|ADN09999.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
          Length = 904

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +    A+AGSGKT +LV R L LL   A PS +L LT T  AA+EMS R++E +     L
Sbjct: 5   NLAYEASAGSGKTFMLVVRYLSLLFKGAEPSKVLALTFTNKAASEMSERIIETLED---L 61

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                 +EI K  G   +     +++ +L   L      K+ TI +F   I+++F L A+
Sbjct: 62  DSRTELSEIAKECGMDEDDILAQRSK-ILAEFLNAHT--KIMTIDSFFTQILRKFSLYAS 118

Query: 153 ITSHFAIADEEQSKKLIEEA--------KKSTLASIMLDNNEELKKAFYEILEIS 199
           +   F  A+ +   KL+           K+STL ++ L++++ +   F  + +  
Sbjct: 119 LMPDFTTANAQHEVKLMSRFLKEVSVANKRSTLINLSLESSKRVSDIFALLDDFY 173


>gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
 gi|88815160|gb|EAR25019.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
          Length = 799

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 41/170 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHT 71
            +D ++  + + +    P  S  + A AGSGKT +L +R+  LL +    PS +L +T T
Sbjct: 23  LLDGLNPRQRQAVEYRGP--SLLIVAGAGSGKTSVLTRRIAGLLRSQEAWPSQILAITFT 80

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  I+   +                                       G+
Sbjct: 81  NKAAAEMRERVAAIVGNAAE--------------------------------------GM 102

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
            + T H+ C  I+++       + +F I D   SK L++   K   A + 
Sbjct: 103 WISTFHSACVRILRREAEAFGFSKNFTIYDSADSKALLKRILKELDADMY 152


>gi|89901667|ref|YP_524138.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89346404|gb|ABD70607.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 1165

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 25/199 (12%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAA 75
            +A DP RS  V A AG+GKT +LV R++R LL             P  +L +T TK AA
Sbjct: 24  AIACDPRRSVAVEACAGAGKTWMLVSRIVRALLDGVDASSGELRVQPHEILAITFTKRAA 83

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-----MSKARHLLITILETPGG 130
           +EM  R+ + +  ++      L  E+T       N+         +   L   IL +   
Sbjct: 84  SEMRERLYQWLAEFAVADRATLLKELTLRGVLDKNELHPPSVLPEQLSKLYQNILRSGRQ 143

Query: 131 LKVQTIHAFCEAIMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           ++V+T H++  A+++  PL       + +++ + +++   K +    +   A+++     
Sbjct: 144 VQVRTFHSWFAALLRSAPLAVLQQMELPANYQLLEDDTPAKAL--VWRRFYAALLRPKPA 201

Query: 187 ELKKAFYEILEISNDEDIE 205
           ++  A     E+  D   E
Sbjct: 202 QVGGA-----ELRGDAPDE 215


>gi|302558895|ref|ZP_07311237.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000]
 gi|302476513|gb|EFL39606.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000]
          Length = 825

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 41/171 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65
             + +  ++ ++    ++           + A AGSGKT +L  R+  LL   + HP  +
Sbjct: 63  VLDAAALLEGLNDN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERHVHPGQI 120

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  RV +++   +                                   
Sbjct: 121 LAITFTNKAAGEMKERVEQLVGPRA----------------------------------- 145

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                + V T H+ C  I+++       TS F+I D   SK+L+    +  
Sbjct: 146 ---NAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 193


>gi|254464957|ref|ZP_05078368.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I]
 gi|206685865|gb|EDZ46347.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I]
          Length = 789

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + E +   D      + A AG+GKT  L  R++ LL    A P+ +L +T T
Sbjct: 27  YLDSLNPAQREAVECLD--GPVLMLAGAGTGKTKALTTRIVHLLSTGRARPNEILSVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                          G  
Sbjct: 85  NKAAREMKERVGALLGQAVE-------------------------------------GMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  ++++    A + S+F I D +   +L+++     + +  +D+     + 
Sbjct: 108 WLGTFHSICVKLLRRHAELAGLKSNFTILDTDDQIRLLKQ----LIQAAGIDDKRWPARM 163

Query: 192 FYEILEISNDEDI 204
              I++   +  +
Sbjct: 164 LAGIIDDWKNRAL 176


>gi|27383199|ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium japonicum USDA 110]
 gi|27356373|dbj|BAC53353.1| blr8088 [Bradyrhizobium japonicum USDA 110]
          Length = 1099

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 80/219 (36%), Gaps = 8/219 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +      + + +D   +  V A AG+GKT +L  RV+ L+ +   P  ++ +T T+ AA 
Sbjct: 3   VVDDAERRRVLTDLDSTLLVEAGAGTGKTSLLAGRVVMLMASGTSPGAIVAITFTELAAG 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ HR+   +       + +L   + +            + R  L    E    L   TI
Sbjct: 63  ELRHRISTYL-------EALLGGAVPRELRLCLPDGPTPEQRRSLAVAAERLDELTCGTI 115

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H++C  ++  + +EA I     + D + +  L +          +   +         ++
Sbjct: 116 HSYCHDLLLSYSVEAGIDPGAEVLDADHADFLFDSTFDRWWRDRLDRPHAAADDPIA-VV 174

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
              N    E L+      R   +      S L     +E
Sbjct: 175 ARRNPTRAEELLRSFSKFRRRYRSAKPQPSDLDPSADLE 213


>gi|225574543|ref|ZP_03783153.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038230|gb|EEG48476.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM
           10507]
          Length = 737

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 39/160 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +    ++           + A AGSGKT +L  R+  L+     +P  ++ +T T  AA 
Sbjct: 6   NLNPQQKEAVCQTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAQ 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +I+   S                                        + V T 
Sbjct: 66  EMKERVDQIVGFGSE--------------------------------------SVWVTTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+ C  I++++       + F I D +  K L+++  K  
Sbjct: 88  HSTCVRILRRYIDRIGFDNRFTIYDADDQKSLMKDICKRL 127


>gi|121595626|ref|YP_987522.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42]
 gi|120607706|gb|ABM43446.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42]
          Length = 816

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 72/224 (32%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+     EQL A   P   A + A AGSGKT +L  R+  LL    A P  +L +T T  
Sbjct: 33  LLQNLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGLATPGGILAVTFTNK 92

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 93  AAKEMLTRLSAMLPI--------------------------------------NVRGMWI 114

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A +   F I D +        A K       +D      K   
Sbjct: 115 GTFHGLCNRLLRAHHKLAGLPQAFQILDTQDQLS----AIKRLCKQFNVDEERFPPKQLA 170

Query: 194 EILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +    +E +    + +     R  ++L   +     R  +++
Sbjct: 171 YFIAGCKEEGMRPRDVPAHDADTRKKVELYQLYEEQCQREGVVD 214


>gi|329964807|ref|ZP_08301830.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
 gi|328524658|gb|EGF51721.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
          Length = 767

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 63/167 (37%), Gaps = 39/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S+ I  +++ + E +L +D    + V A AGSGKT +L  ++  LL     P  +L LT
Sbjct: 1   MSDYIQELNEGQREAVLYND--GPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+   + A                           +ARHL         
Sbjct: 59  FTNKAAREMKERIARQVGA--------------------------DRARHL--------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+    I+     +   TS F I D   SK L+    K  
Sbjct: 84  --WMGTFHSMFLRILHAEAGQLGFTSQFTIYDTADSKSLLRSIIKEM 128


>gi|257784187|ref|YP_003179404.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
 gi|257472694|gb|ACV50813.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
          Length = 812

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           IDL     ++            V A AGSGKT +L  R+  ++      P  +L +T T 
Sbjct: 3   IDLEGLNPAQHQAVMTTQGPLLVLAGAGSGKTRVLTFRIAHMIADEGVRPWQVLAITFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  ++                                           G+ 
Sbjct: 63  KAAAEMRERLEALLP--------------------------------------NNIRGMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T HA C  ++++         +FAI D++ SK+L++      
Sbjct: 85  VCTFHAMCVRLLREDGDRLGYGPNFAIYDDDDSKRLVKAILSDL 128


>gi|154148488|ref|YP_001406940.1| ATP-dependent DNA helicase UvrD [Campylobacter hominis ATCC
           BAA-381]
 gi|153804497|gb|ABS51504.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter hominis
           ATCC BAA-381]
          Length = 923

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 15/196 (7%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           ++  R   + A+AGSGKTH L +R + L+L  A P+ +L +T TK AA+EM  R++E   
Sbjct: 5   NENNRYEALQASAGSGKTHALTKRFVELMLDGALPNQILAITFTKKAASEMKSRIVE--- 61

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           A+  L +  +  ++    G+   +  +++   L    L     LK+ T  AF  +I++ F
Sbjct: 62  AFLDLENSKILHDVMNDFGESK-EQILNRRDKLKEKFLNQ--NLKIYTFDAFFSSILRAF 118

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--EISNDEDIE 205
            L   ++S+F++ D   S +      +  L+ I    NE+  K F   +     +D  + 
Sbjct: 119 ALNLGLSSNFSVDDSITSIQ-----NEKFLSEI--SKNEQTLKNFVRYIFERERSDTQVY 171

Query: 206 TLISDIISNRTALKLI 221
             +     N  +LK I
Sbjct: 172 DDLDKFWKNNISLKKI 187


>gi|332040845|gb|EGI77217.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624]
          Length = 846

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 50/232 (21%)

Query: 10  HSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
            S  + L++   +EQ  A   P   A + A AGSGKT +L  R+  LL      P  LL 
Sbjct: 37  SSSDMPLLAGLNTEQRAAVTLPAEPALILAGAGSGKTRVLTTRIAWLLQTGQISPGGLLA 96

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++                                         
Sbjct: 97  VTFTNKAAREMMTRLQSMLPV--------------------------------------N 118

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H  C  +++     A +   F I D +      + A K       +D    
Sbjct: 119 VRGMWIGTFHGLCNRLLRAHHKTAGLPQTFQILDTQDQ----QSAIKRLCKQFNVDEERF 174

Query: 188 LKKAFYEILEISNDEDIETLISDIISN----RTALKLIFFFFSYLWRRKIIE 235
             K     +    ++ +     D+ ++    R  ++L   +     R  +++
Sbjct: 175 PPKQLQWFIGGCKEDGLRP--GDVQAHDPDTRKKVELYQLYEEQCQREGVVD 224


>gi|312199973|ref|YP_004020034.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c]
 gi|311231309|gb|ADP84164.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c]
          Length = 834

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 78/243 (32%), Gaps = 48/243 (19%)

Query: 4   HNSFQEHSETID---LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA- 58
           H   +  S  +D   L++    +Q  A     S   + A AGSGKT +L  R+  LL A 
Sbjct: 45  HQPERRASPRLDPDALLAGLNPQQRAAVVHEGSPLLIVAGAGSGKTRVLAHRIAYLLAAR 104

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           N HP  +L +T T  AA EM  RV  ++                                
Sbjct: 105 NVHPGEILAITFTNKAANEMRERVGALVGGRVR--------------------------- 137

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
                       + V T H+ C  I++         S F+I D   +++LI    +    
Sbjct: 138 -----------AMWVSTFHSACVRILRNESKRLGFGSSFSIYDAADAQRLITLVCRDLDL 186

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                    L      +     D +     +     RT  ++   +      R++ E + 
Sbjct: 187 DSKRHPARGLAAQISTLKNELVDHETAQAKASSHPERTVAEVYALYQ-----RRLREANA 241

Query: 239 WSI 241
              
Sbjct: 242 LDF 244


>gi|320107768|ref|YP_004183358.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319926289|gb|ADV83364.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 1189

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 19/225 (8%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSH 80
           E+  A D TRS  V A AGSGKT +L+QR L+LLL      P+ ++ +T T  A  E+ +
Sbjct: 10  EREQALDTTRSWIVEAPAGSGKTGLLIQRYLKLLLDPQIESPAQVIAITFTTKATEEIRN 69

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+L  +++ S  ++     +  +   +   K  +++       +L+ P  L ++TI +  
Sbjct: 70  RILSALSSASQDTE----VDSFERTTRDLAKQVLARDAEHGWQLLQQPEQLNIRTIDSLA 125

Query: 141 EAIMQQFPLEAN----ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
             I +  P+ A     +         E +  L   A +  +  +  + + EL +A   IL
Sbjct: 126 AEIARSMPVLAGGWGKLQPA------EDAWPLYARAARRVMLKLGGE-DRELHQAIETIL 178

Query: 197 --EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
               +N   +E LI  ++  R     +          + +++ + 
Sbjct: 179 LHRDANLAGVEALICGMLQKREQWGSLIPLRGAELTDEFLDEQVL 223


>gi|170755491|ref|YP_001782895.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str.
           Okra]
 gi|169120703|gb|ACA44539.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str.
           Okra]
          Length = 738

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL ++   EQ   A        + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                           G+
Sbjct: 61  NKAAGEMKERIKALVGDVVE--------------------------------------GM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +F I D    K L+++  +  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127


>gi|118602136|ref|YP_903351.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567075|gb|ABL01880.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 1053

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 5/205 (2%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             ++++  A D ++S  V A AGSGKT +L QR L+LL  +A P +++ +T TK A +E+
Sbjct: 2   NDQTQRRQALDVSQSFIVQAPAGSGKTELLTQRYLKLLSVSASPESVIAMTFTKKAVSEL 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV+E +     L+      E  K          + K++ L   +L      K+ TI  
Sbjct: 62  TTRVIESL----KLAQGNRPKESYKQTTYDLALKVLEKSKTLDWQLLNMYERFKILTIDG 117

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I  ++P +  +     IA       +  +A K TL +I     +   ++    L+ 
Sbjct: 118 LSGLIASRYPSKNQLVPKQIIAQNCVRNDIYLKAAKQTLLAIDESEYQNSIESVLLYLD- 176

Query: 199 SNDEDIETLISDIISNRTALKLIFF 223
           +N      LI D+++ R    L  +
Sbjct: 177 NNVNKFYRLIIDMLAKRDQWLLKLY 201


>gi|295109226|emb|CBL23179.1| ATP-dependent DNA helicase PcrA [Ruminococcus obeum A2-162]
          Length = 744

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 44/189 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D ++  + E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 5   DTLNDRQKEAVFYTE--GPLLILAGAGSGKTRVLTHRIAYLIAEKGINPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  I                                           G + V
Sbjct: 63  AAHEMRERVDRIAGNVGG-------------------------------------GSVWV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++        ++F I D +  K L++E  +     + +D  +  ++A  
Sbjct: 86  STFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLMKEICR----KMNIDTKKVKERALL 141

Query: 194 EILEISNDE 202
             +  + DE
Sbjct: 142 AQISHAKDE 150


>gi|238917480|ref|YP_002930997.1| hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750]
 gi|238872840|gb|ACR72550.1| Hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750]
          Length = 822

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 43/190 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           + L     S++        +  + A AGSGKT +L  R+  L+      P  ++ +T T 
Sbjct: 1   MRLEDLNDSQKRAVKYTDGALLIIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV   +   +                                      G + 
Sbjct: 61  KAAREMKERVETTVAQGA--------------------------------------GAVW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I++++       ++F I D +  K +I++  K     + +D     ++A 
Sbjct: 83  VSTFHSTCVRILRRYIDRIGYDNNFTIYDTDDQKSVIKDICK----KMNIDTKMLKERAI 138

Query: 193 YEILEISNDE 202
              +  + DE
Sbjct: 139 MSKISSAKDE 148


>gi|195977957|ref|YP_002123201.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|251764553|sp|B4U2H1|ADDA_STREM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|195974662|gb|ACG62188.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 1214

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 30/236 (12%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            Q+     D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 16  LQQEEALSDKRHKRTAQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGISVDRL 75

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+ + +      + +                    + +  L   L
Sbjct: 76  FISTFTVKAATELIERIEKKLHTAIAETQDY-------------------QLKAYLNDQL 116

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           +      + T+ AF + ++ Q      I+ HF I  D+ +   L  E  +      M   
Sbjct: 117 QALSQADIGTMDAFAQKLVHQHGYVLGISPHFRIIQDKAEQDILKREVFRQVFEDYMSQT 176

Query: 185 NEELKKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           +    KAF +++   S      +   +I+ +     +  F  S       + +   
Sbjct: 177 D---NKAFIQLVQNFSGRRKDSSAFREIVDS-----IYAFSQSTANPSSWLAEVFL 224


>gi|315641090|ref|ZP_07896169.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
 gi|315483098|gb|EFU73615.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
          Length = 754

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +  ++  + E +LA+       + A AGSGKT +L  RV  L+   + +P  +L +T 
Sbjct: 7   ELLRGMNPQQKEAVLAT--AGPLLLMAGAGSGKTRVLTHRVAYLIQEKDVNPWNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   S                                        
Sbjct: 65  TNKAAREMRERIHALVGPESE--------------------------------------D 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + + T H+ C  I+++   +     +F I D      L++   K  
Sbjct: 87  IWISTFHSMCVRILRREVEKIGYNRNFTILDSSDQLSLMKRMLKEL 132


>gi|221194558|ref|ZP_03567615.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626]
 gi|221185462|gb|EEE17852.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626]
          Length = 843

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 39/171 (22%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
           F  +   + L     +++           V A AGSGKT +L  R+  ++      P  +
Sbjct: 10  FSANPSRLSLQDLNAAQREAVLATQGPLLVLAGAGSGKTRVLTYRIAHMIADEGVRPWQI 69

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AAAEM  R+  ++   +                                   
Sbjct: 70  LAITFTNKAAAEMRERLGTLLPGGTR---------------------------------- 95

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               G+ V T HA C  ++++         +F I D++ SK+L++      
Sbjct: 96  ----GMWVCTFHAMCVRMLREDSEAVGFGPNFTIYDDDDSKRLVKAIMADL 142


>gi|120437697|ref|YP_863383.1| UvrD/REP family helicase [Gramella forsetii KT0803]
 gi|117579847|emb|CAL68316.1| UvrD/REP family helicase [Gramella forsetii KT0803]
          Length = 1035

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 8/175 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT  LV+  L +L ++        +L +T T  A  EM  R++E ++ +S   
Sbjct: 9   NASAGSGKTFTLVKEYLIILYSSKKRDRYKNILAITFTNKAVGEMKTRIIESLSEFSKAE 68

Query: 94  DEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               +  + K   ++   S     +K+  +L +I+      ++ TI  F   +++ F  +
Sbjct: 69  VSSENNPLLKAIIEETGYSTECIRTKSAEILKSIIHNYAAFEISTIDGFTHRVLRTFARD 128

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             I  +F +  E  + +++ EA  S ++    D         Y + +  +D+  +
Sbjct: 129 LGIPMNFEV--ELSADEILLEAVDSLISRAGSDKKLTKVLVDYTLSKTDDDKSWD 181


>gi|300870871|ref|YP_003785742.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
 gi|300688570|gb|ADK31241.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
          Length = 660

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 39/167 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++             A AGSGKT ++ +R+  L+     PS +L +T T  AA EM 
Sbjct: 3   NEEQKKAVEHINGPMLALAGAGSGKTRVITERIAYLIKNGIDPSNILAVTFTNKAANEMR 62

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  ++                                       E P  L + T H+F
Sbjct: 63  ERIASLLK--------------------------------------EKPKQLVISTFHSF 84

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185
           C  +++    +     +F+I     S+ LI    +   + ++  D N
Sbjct: 85  CVRVLKLDIDKLGYKKNFSIYSSSDSRTLIRNILREVKVNTLNYDEN 131


>gi|256420067|ref|YP_003120720.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
 gi|256034975|gb|ACU58519.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
          Length = 783

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 38/162 (23%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + + +   +Q LA +       + A AGSGKT +L  R+  L+        +L LT T  
Sbjct: 4   NYLDELNEQQRLAVAHINGPLMIVAGAGSGKTKVLTTRIAHLMRNGVDAFNILSLTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +I+                            ++AR+L            +
Sbjct: 64  AAREMKERVEKILGG--------------------------TEARNLY-----------I 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+    +++         + F I D + +K +++     
Sbjct: 87  GTFHSVFARLLRAEAHRLGYPNDFTIYDSDDAKSVLKTIINE 128


>gi|299532528|ref|ZP_07045918.1| UvrD/REP helicase [Comamonas testosteroni S44]
 gi|298719475|gb|EFI60442.1| UvrD/REP helicase [Comamonas testosteroni S44]
          Length = 827

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQL A   P   A + A AGSGKT +L  R+  LL    A P +++ +T T  
Sbjct: 26  LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 86  AAKEMLTRLSAMLPY--------------------------------------NVRGMWI 107

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A +   F I D +        A K       +D+     K   
Sbjct: 108 GTFHGLCNRLLRAHYQAAKLPQAFQILDTQDQLS----AIKRLCKQFNVDDERFPPKQLM 163

Query: 194 EILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +    +E +    +++     R  ++L   +     R  +++
Sbjct: 164 YFIAGCKEEGMRPGDVVATDPDTRKKVELYQLYEEQCQREGVVD 207


>gi|170758795|ref|YP_001788588.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405784|gb|ACA54195.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 738

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL ++   EQ   A        + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                           G+
Sbjct: 61  NKAAGEMKERIKALVGDVVE--------------------------------------GM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +F I D    K L+++  +  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127


>gi|289705920|ref|ZP_06502298.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
 gi|289557366|gb|EFD50679.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
          Length = 962

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    +Q  A +       + A AGSGKT +L  R+  LL    A P  +L +T T  
Sbjct: 62  LVAGLNPQQAAAVTHTGAPLLIVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNK 121

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV  +I                                        T   + +
Sbjct: 122 AAAEMRERVAGLIGP--------------------------------------TAQRMWI 143

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+    +++       + S F I D   S +L+    K 
Sbjct: 144 STFHSSAVRLLRNEAANIGLKSTFTIYDSADSLRLVTTVAKQ 185


>gi|302553643|ref|ZP_07305985.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
 gi|302471261|gb|EFL34354.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
          Length = 826

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           + +  ++ ++    ++           + A AGSGKT +L  R+  LL   + HP  +L 
Sbjct: 65  DTAALLEGLNDN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERDVHPGQILA 122

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++   +                                     
Sbjct: 123 ITFTNKAAGEMKERVEQLVGPRA------------------------------------- 145

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + V T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 146 -NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193


>gi|168703681|ref|ZP_02735958.1| ATP-dependent DNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 755

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 45/176 (25%)

Query: 10  HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            S+  DL++    +Q  A         + A AGSGKT ++ +RV  LL A      +L +
Sbjct: 1   MSDDADLLADLTPDQRAAVMHGEGPLLILAGAGSGKTRVITRRVAYLLRAGVRAHNILAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM +RV +                                        L   
Sbjct: 61  TFTNKAAGEMKNRVEK----------------------------------------LAPG 80

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
             + V T H+    +++Q+        +F I D +   KL+++A    L +  +DN
Sbjct: 81  NRVWVSTFHSLGARLLRQYAERLGFDRNFTIYDTDDRNKLVKDA----LEAAGIDN 132


>gi|238027765|ref|YP_002911996.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1]
 gi|237876959|gb|ACR29292.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1]
          Length = 789

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQ  A   P   A + A AGSGKT +L+ R+  L+    A P T+L +T T 
Sbjct: 3   DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPPTVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                       G+ 
Sbjct: 63  KAAREMLSRLSAMMPIDTR--------------------------------------GMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    +A +   F I D          A K  + +  +D+ +   K  
Sbjct: 85  IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKASNIDDEKYPPKNV 140

Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
              +  + ++ +     +     NR  ++L   +     R  +++
Sbjct: 141 QYFINNAKEQGLRPDKVEANDSFNRMFVQLYQAYDQQCQREGVVD 185


>gi|111220613|ref|YP_711407.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111148145|emb|CAJ59814.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 847

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 73/224 (32%), Gaps = 41/224 (18%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++    ++           V A AGSGKT +L  R+  LL A    P  +L +T T
Sbjct: 53  LLDGLN--PQQRAAVVHIGAPLLVVAGAGSGKTRVLAHRIAYLLAARGVRPGEILAITFT 110

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++                             +AR            +
Sbjct: 111 NKAAAEMRERVGALVG---------------------------PRAR-----------AM 132

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+ C  I++         S F+I D   +++LI    +             L   
Sbjct: 133 WVSTFHSACVRILRSEAKRLGYGSSFSIYDAADAQRLITLVTRDLDLDPKRHPARGLAAQ 192

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
              +     D +     +     RT  ++   +   L +   ++
Sbjct: 193 ISNLKNELIDWEAARDRASSHQERTLAEVYAAYQQRLAQANALD 236


>gi|254719445|ref|ZP_05181256.1| ATP-dependent DNA helicase pcrA [Brucella sp. 83/13]
 gi|265984450|ref|ZP_06097185.1| UvrD/REP helicase [Brucella sp. 83/13]
 gi|306839222|ref|ZP_07472039.1| DNA helicase II [Brucella sp. NF 2653]
 gi|264663042|gb|EEZ33303.1| UvrD/REP helicase [Brucella sp. 83/13]
 gi|306405769|gb|EFM62031.1| DNA helicase II [Brucella sp. NF 2653]
          Length = 858

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|121608662|ref|YP_996469.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121553302|gb|ABM57451.1| ATP-dependent DNA helicase UvrD [Verminephrobacter eiseniae EF01-2]
          Length = 793

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 75/229 (32%), Gaps = 46/229 (20%)

Query: 11  SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           S    L+     EQL A   P   A + A AGSGKT +L  R+  LL    A P ++L +
Sbjct: 12  SAASPLLVHLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGHARPGSILAV 71

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  ++                                          
Sbjct: 72  TFTNKAAKEMVARLSAMLPVHVR------------------------------------- 94

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
            G+ + T H  C  +++     A +   F I D +        A K       +D+    
Sbjct: 95  -GMWIGTFHGLCNRLLRAHHQAAGLPQTFQILDTQDQLA----AVKRLCKQHNVDDERFA 149

Query: 189 KKAFYEILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            K     +    ++ +    +     + R  +++   +     R  +++
Sbjct: 150 PKDLAHFIANCKEQGLRPNDVQGQDSNTRKKIEIYQLYEEQCQREGVVD 198


>gi|153939400|ref|YP_001392617.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
           Langeland]
 gi|152935296|gb|ABS40794.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
           Langeland]
          Length = 738

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL ++   EQ   A        + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                           G+
Sbjct: 61  NKAAGEMKERIKALVGDVVE--------------------------------------GM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +F I D    K L+++  +  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127


>gi|187735189|ref|YP_001877301.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425241|gb|ACD04520.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 669

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 54/164 (32%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  +    EQ  A       A V A AGSGKT  L  RV  LL     P  +L LT T 
Sbjct: 20  IDYRTALNEEQYAAVSSEPGPALVIAGAGSGKTRTLTYRVAWLLDHGTDPWNILLLTFTN 79

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ RV  +I                                            L 
Sbjct: 80  KAAREMTERVRSLIP--------------------------------------LDLSRLW 101

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             T H+    I++Q       T  F I D +  K +I+   KS 
Sbjct: 102 SGTFHSIANRILRQHAEYLGYTPAFTIMDSDDRKSMIKSVVKSL 145


>gi|50913958|ref|YP_059930.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394]
 gi|81602230|sp|Q5XCW6|ADDA_STRP6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|50903032|gb|AAT86747.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394]
          Length = 1222

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|302386124|ref|YP_003821946.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
 gi|302196752|gb|ADL04323.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
          Length = 762

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 79/227 (34%), Gaps = 50/227 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           D ++  + E +L         V A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 5   DTLNPMQKEAVL--HTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKSINPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   +                                        + V
Sbjct: 63  AAGEMRERVDRLVGFGA--------------------------------------DSIWV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++       T++F I D +  K L+    +  L  + +D      +A  
Sbjct: 85  STFHSSCVRILRRHIESLGYTTNFTIYDSDDQKTLM----RHVLKGLDMDPKIYKDRAML 140

Query: 194 EILEISND-----EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +  + +     E+ E         +   ++   + + L +   ++
Sbjct: 141 GFISTAKNELVTAEEFEQNAGGDFRQKKVAQIYKEYQNQLRKNNALD 187


>gi|91787605|ref|YP_548557.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666]
 gi|91696830|gb|ABE43659.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666]
          Length = 825

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 69/223 (30%), Gaps = 45/223 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +    +    + P   A + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 20  LHNLNPEQHAAVTLPNEHALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKA 79

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++                                           G+ + 
Sbjct: 80  AKEMLARLSAMLPV--------------------------------------NVRGMWIG 101

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H  C   ++     AN+   F I D +        A K       +D+     K    
Sbjct: 102 TFHGLCNRFLRAHYKLANLPQSFQILDTQDQLS----AIKRLCKQFNVDDERFPPKQLAW 157

Query: 195 ILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
            +    ++ +      +     R  +++   +     R  +++
Sbjct: 158 FIASCKEDGLRAKDVQVRDEEGRKKVEIYALYEEQCQREGVVD 200


>gi|264677052|ref|YP_003276958.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
 gi|262207564|gb|ACY31662.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
          Length = 827

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQL A   P   A + A AGSGKT +L  R+  LL    A P +++ +T T  
Sbjct: 26  LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 86  AAKEMLTRLSAMLPY--------------------------------------NVRGMWI 107

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A +   F I D +        A K       +D+     K   
Sbjct: 108 GTFHGLCNRLLRAHYQAAKLPQAFQILDTQDQLS----AIKRLCKQFNVDDERFPPKQLM 163

Query: 194 EILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +    +E +    +++     R  ++L   +     R  +++
Sbjct: 164 YFIAGCKEEGMRPGDVVATDPDTRKKVELYQLYEEQCQREGVVD 207


>gi|226950697|ref|YP_002805788.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843377|gb|ACO86043.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str.
           Kyoto]
          Length = 738

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL ++   EQ   A        + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                           G+
Sbjct: 61  NKAAGEMKERIKALVGDVVE--------------------------------------GM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +F I D    K L+++  +  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127


>gi|55823610|ref|YP_142051.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus
           CNRZ1066]
 gi|81558977|sp|Q5LY80|ADDA_STRT1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|55739595|gb|AAV63236.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus
           CNRZ1066]
          Length = 1217

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L ++        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +T                   K   +++  + R  L   +   G   + T+ AF
Sbjct: 89  ERLEKRLT-------------------KHLGQAETDEERAFLSDQIAKIGTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196
            + ++ Q+     ++  F I  +  +   +  E         M   + +L +        
Sbjct: 130 TQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
                +    L+ DI           F  +     K + ++L 
Sbjct: 190 HSKTSKAFRDLVYDI---------YSFSQATADPEKWLCQNLL 223


>gi|253568515|ref|ZP_04845926.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6]
 gi|251842588|gb|EES70668.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6]
          Length = 788

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + I +    Q  A       + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 4   NYIEELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                           M +AR+L            +
Sbjct: 64  AAREMKERIARQVG--------------------------MERARYL-----------WM 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I D   SK LI    K  
Sbjct: 87  GTFHSVFSRILRAEAKYIGFTSQFTIYDSADSKSLIRSIIKEM 129


>gi|288553536|ref|YP_003425471.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4]
 gi|288544696|gb|ADC48579.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4]
          Length = 1135

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 35/218 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLC 67
           +   K++    ++      ++A AGSGKT +L +R++ LL    H            +  
Sbjct: 1   MEFNKAQTSAITNEQSLVVIAAGAGSGKTRVLTERIMYLLEKAFHEPSSSIAATIEEVAA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T+ AA EM  RV + I+    L+     A   + Q +   ++               
Sbjct: 61  ITFTEKAAREMKDRVRKRISEKEVLAQTEAEAAFWREQKELVERAH-------------- 106

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                + T H+FC+ ++ Q+ + A +     I DE ++K+L  +  K  L  +       
Sbjct: 107 -----ISTFHSFCQQLLGQYAMAAKLPPKIRIIDEVEAKQLKRDVLKKHLQDV---EFTA 158

Query: 188 LKKAFYEILE----ISNDEDIETLISDIISNRTALKLI 221
             K F+  +     IS  EDI   IS+++    A+  +
Sbjct: 159 SAKEFFSYMSKDQFISTMEDIHASISELVIGEDAVLQL 196


>gi|182419338|ref|ZP_02950590.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521]
 gi|182376669|gb|EDT74241.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521]
          Length = 757

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 40/166 (24%)

Query: 13  TIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
            +DL +    EQ   A+       + A AGSGKT +L  R+  ++   N  P  +L +T 
Sbjct: 1   MLDLKNLLNKEQYEGATTIEGQVLILAGAGSGKTRVLTHRIAHMVEDLNIAPYNILAITF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  +I   +                                        
Sbjct: 61  TNKAAKEMKDRVRALIGECAE--------------------------------------N 82

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + + T H+ C  I+++   +    S F I D    K L++E  K+ 
Sbjct: 83  MWISTFHSTCVKILRREIDKIGYKSSFTIYDSSDQKTLVKECMKTV 128


>gi|55821688|ref|YP_140130.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus LMG
           18311]
 gi|81560167|sp|Q5M2T7|ADDA_STRT2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|55737673|gb|AAV61315.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus
           LMG 18311]
          Length = 1217

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L ++        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +T                   K   +++  + R  L   +   G   + T+ AF
Sbjct: 89  ERLEKRLT-------------------KHLGQAETDEERAFLSDQIAKIGTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196
            + ++ Q+     ++  F I  +  +   +  E         M   + +L +        
Sbjct: 130 TQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
                +    L+ DI           F  +     K + ++L 
Sbjct: 190 HSKTSKAFRDLVYDI---------YSFSQATADPEKWLCQNLL 223


>gi|149371101|ref|ZP_01890696.1| ATP-dependent helicase [unidentified eubacterium SCB49]
 gi|149355887|gb|EDM44445.1| ATP-dependent helicase [unidentified eubacterium SCB49]
          Length = 1056

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 12/183 (6%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           + P+      A AGSGKT+ LV+R L  LL    N++   LL LT T  A AEM  R++ 
Sbjct: 2   NTPSPFFIYDAAAGSGKTYSLVKRYLSTLLQQPKNSYYRQLLALTFTNKAVAEMKERIVN 61

Query: 85  IITAWSHL----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            +  ++          +  +I +    +P      +A  +L  +L       V+TI +F 
Sbjct: 62  SLITFADKQVIKDPPPMFLDIAETLELEP-LVIQQRANDILTQLLHNYAAFSVETIDSFN 120

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++ F  +  + S+F +  +  +  L+ EA  + +     D  + + K   E      
Sbjct: 121 HRLIRTFSKDLKLPSNFEVMLDIDN--LLTEAVDALINKAGTD--KAITKILIEFAMEKT 176

Query: 201 DED 203
           D+D
Sbjct: 177 DDD 179


>gi|319939427|ref|ZP_08013787.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus
           1_2_62CV]
 gi|319811413|gb|EFW07708.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus
           1_2_62CV]
          Length = 1226

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L       L   T T  AA+E+ 
Sbjct: 29  TPEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVRIDQLFISTFTVKAASELK 88

Query: 80  HRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            R+ + ++ A     DE L   + +     PN                      + T+ +
Sbjct: 89  ERLEKELSKALKATGDEELKQHLAQQLADIPN--------------------ADIGTMDS 128

Query: 139 FCEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           F + ++ ++     +  +F I     +   L  E  +         +   L   F ++++
Sbjct: 129 FTQKVLNKYGYLLELAPNFRILQSASEQLLLQNEVFEQVFEEFYQSDQAAL---FKKLVK 185

Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
               +       D++  R  + K+  F  S       +EK   
Sbjct: 186 NFTGQR-----KDLLGFREQIYKIYAFLQSTSSPIAWLEKDFL 223


>gi|163839113|ref|YP_001623518.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
 gi|162952589|gb|ABY22104.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
          Length = 797

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 44/198 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           ++  +L+     EQ  A     S   + A AGSGKT +L  R+  LL    AHP  +L +
Sbjct: 25  ADAKELLHGLNPEQEAAVTHAGSPLLIVAGAGSGKTRVLSHRIAYLLATGRAHPGQILAI 84

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AAAEM  R+  +I   +                                      
Sbjct: 85  TFTNKAAAEMRERIAALIGDAAK------------------------------------- 107

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             + + T H+ C  I+++      + S F+I D   S +LI    +     + LD     
Sbjct: 108 -NMWISTFHSSCVRILRREASTVGLNSSFSIYDSADSLRLITLIAR----GLDLDPKRFA 162

Query: 189 KKAFYEILEISNDEDIET 206
            KA    +    +E I+ 
Sbjct: 163 PKAMQHKISALKNELIDD 180


>gi|312127653|ref|YP_003992527.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777672|gb|ADQ07158.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108]
          Length = 714

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ++ + +   +Q  A         V A AGSGKT ++  R+  +L    A+P  +L +T T
Sbjct: 1   MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +++                                      ++   +
Sbjct: 61  NKAADEMKERIKRLVST-------------------------------------QSFSEM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I++        +++F I D +  ++L++E     
Sbjct: 84  WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRQQLLKECFDRL 128


>gi|34495660|ref|NP_899875.1| DNA helicase II [Chromobacterium violaceum ATCC 12472]
 gi|34101515|gb|AAQ57884.1| DNA helicase II [Chromobacterium violaceum ATCC 12472]
          Length = 713

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 44/194 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL++    EQL A   P +SA V A AGSGKT +L  R+  LL      P+ +L +T T 
Sbjct: 3   DLLAGLNPEQLRAVTWPAKSALVLAGAGSGKTRVLTTRIAWLLSTGQTSPAGVLAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                            + 
Sbjct: 63  KAAREMQTRLSALVPV--------------------------------------NVRNMW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C   ++    +A +   F I D        + A K  L S+ L + +   +A 
Sbjct: 85  IGTFHGLCNRFLRIHYRDAGLPQTFQILDSADQ----QAAIKRLLKSLELSDEKYPPRAV 140

Query: 193 YEILEISNDEDIET 206
              +  + +  +  
Sbjct: 141 QSFINGNKEAGLRA 154


>gi|237785085|ref|YP_002905790.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757997|gb|ACR17247.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 870

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 53/217 (24%)

Query: 16  LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+     +Q  A +   S   V A AGSGKT +L +R+  L+ +    P  ++ +T T  
Sbjct: 20  LLEGLNPQQRQAVEHEGSPLLVVAGAGSGKTAVLTRRIAYLIGVRGVAPWNIVAITFTNK 79

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV ++I   +                                        + V
Sbjct: 80  AATEMKERVADLIGPIAE--------------------------------------RMWV 101

Query: 134 QTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKL-----------IEEAKKSTLASIM 181
            T H+ C  I++        + ++F I D + S++L           ++     T+AS +
Sbjct: 102 STFHSMCVRILRAQANLIPGLNTNFTIYDSDDSRRLLTMIARDMNLDLKRFASRTVASAI 161

Query: 182 LDNNEELKKAFYEILEISNDED-IETLISDIISNRTA 217
            +   EL+     + +   D++     ++ I +    
Sbjct: 162 SNLKNELRTPDEALADAEEDKNPFNETVAQIFAEYQK 198


>gi|196231880|ref|ZP_03130736.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196224002|gb|EDY18516.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 666

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 57/161 (35%), Gaps = 39/161 (24%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  ++   +Q  A + P   A V A AGSGKT  L  RV  LL     P  +L LT T 
Sbjct: 18  IDFAAELNPQQHEAVTAPPGPALVIAGAGSGKTRTLTFRVAYLLENGVLPQNILLLTFTN 77

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                                           GL 
Sbjct: 78  KAAREMLDRVANLLP--------------------------------------NDISGLW 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
             T H+    ++++ P  A     F+I D E  + +++   
Sbjct: 100 GGTFHSVGNRLLRRHPEAAGFAPGFSIMDREDQQDMLDSVI 140


>gi|23502284|ref|NP_698411.1| DNA helicase II [Brucella suis 1330]
 gi|161619361|ref|YP_001593248.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365]
 gi|254704671|ref|ZP_05166499.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 3 str. 686]
 gi|260566081|ref|ZP_05836551.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|261755364|ref|ZP_05999073.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686]
 gi|23348259|gb|AAN30326.1| DNA helicase II [Brucella suis 1330]
 gi|161336172|gb|ABX62477.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365]
 gi|260155599|gb|EEW90679.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|261745117|gb|EEY33043.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686]
          Length = 858

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|148381216|ref|YP_001255757.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
           3502]
 gi|153933103|ref|YP_001385591.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
           19397]
 gi|153936248|ref|YP_001388997.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall]
 gi|168179081|ref|ZP_02613745.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916]
 gi|148290700|emb|CAL84830.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152929147|gb|ABS34647.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
           19397]
 gi|152932162|gb|ABS37661.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall]
 gi|182670183|gb|EDT82159.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916]
          Length = 738

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL ++   EQ   A        + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                           G+
Sbjct: 61  NKAAGEMKERIKALVGDVVE--------------------------------------GM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +F I D    K L+++  +  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127


>gi|221068754|ref|ZP_03544859.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
 gi|220713777|gb|EED69145.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
          Length = 827

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQL A   P   A + A AGSGKT +L  R+  LL    A P +++ +T T  
Sbjct: 26  LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 86  AAKEMLTRLSAMLPY--------------------------------------NVRGMWI 107

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A +   F I D +        A K       +D+     K   
Sbjct: 108 GTFHGLCNRLLRAHYQAARLPQAFQILDTQDQLS----AIKRLCKQFNVDDERFPPKQLM 163

Query: 194 EILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +    +E +    +++     R  ++L   +     R  +++
Sbjct: 164 YFIAGCKEEGMRPGDVVATDPDTRKKVELYQLYEEQCQREGVVD 207


>gi|116510847|ref|YP_808063.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123025697|sp|Q033I1|ADDA_LACLS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116106501|gb|ABJ71641.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1203

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 35/230 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +        ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+
Sbjct: 4   VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   +      S +   A                   H L   L       + T+
Sbjct: 64  ELRMRLERDLKKARQESSDDEEA-------------------HRLTLALHNLSNADIGTM 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            +F + + +      NI  +F I  ++    LI +     L    L  +E L        
Sbjct: 105 DSFTQKLTKANFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSADESLN------- 157

Query: 197 EISNDEDIETLISDIISNRTAL---KLIFFFFSYL----WRRKIIEKSLW 239
              + +  E LI +   +R  L   K+++  + +          +E    
Sbjct: 158 --ISKDKFEKLIKNFSKDRNILGFQKVVYTIYRFASATENPISWLENQFL 205


>gi|158334598|ref|YP_001515770.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017]
 gi|158304839|gb|ABW26456.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017]
          Length = 780

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 17/176 (9%)

Query: 10  HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
            S   D +S     Q  A +       V A AGSGKT  L  R+  L++ +  +P  +L 
Sbjct: 1   MSAIPDFLSHLNPSQRQAVEHFCGPLLVVAGAGSGKTRALTYRISNLVMRHQVNPENILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ ++        D   + E+   Q +       +K R  +   +  
Sbjct: 61  VTFTNKAAREMKERIEKLFAEQLAQQDHGKALELLAPQQQ-------TKLRSQVYKTITK 113

Query: 128 PGGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTL 177
           P  L + T H+ C  +++    ++  E       +F+I DE   + LI++   + L
Sbjct: 114 P--LWIGTFHSLCARLLRMEIEKYQDEKGRKWQRNFSIFDESDVQSLIKDIVVNQL 167


>gi|254702135|ref|ZP_05163963.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 5 str. 513]
 gi|261752704|ref|ZP_05996413.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513]
 gi|261742457|gb|EEY30383.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513]
          Length = 858

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|168177782|ref|ZP_02612446.1| recombination helicase AddA [Clostridium botulinum NCTC 2916]
 gi|182671018|gb|EDT82992.1| recombination helicase AddA [Clostridium botulinum NCTC 2916]
          Length = 1279

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 80/224 (35%), Gaps = 35/224 (15%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70
           +     T  +         +  V+A AG+GKT +LVQR++  +L    P     LL +T 
Sbjct: 1   MSGTKWTDEQSQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAAAEM  R+ + I+               K   + P    + K   LL         
Sbjct: 61  TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH+FC  +++       I  +F I DE +   + +EA       +    NE+   
Sbjct: 99  SNIMTIHSFCLQVIKNNLHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFIN 158

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                              DI      L+L  F  S  +    +
Sbjct: 159 LVESYASRK----------DIRLQEVVLELHRFAKSAPFPYTWL 192


>gi|163843668|ref|YP_001628072.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445]
 gi|163674391|gb|ABY38502.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445]
          Length = 858

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|306827618|ref|ZP_07460898.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC
           10782]
 gi|304430181|gb|EFM33210.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC
           10782]
          Length = 1222

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNVLVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|254689608|ref|ZP_05152862.1| DNA helicase II [Brucella abortus bv. 6 str. 870]
 gi|254694098|ref|ZP_05155926.1| DNA helicase II [Brucella abortus bv. 3 str. Tulya]
 gi|256257857|ref|ZP_05463393.1| DNA helicase II [Brucella abortus bv. 9 str. C68]
 gi|260755135|ref|ZP_05867483.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|260884147|ref|ZP_05895761.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|261214396|ref|ZP_05928677.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya]
 gi|297248693|ref|ZP_06932411.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus
           bv. 5 str. B3196]
 gi|260675243|gb|EEX62064.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|260873675|gb|EEX80744.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|260916003|gb|EEX82864.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya]
 gi|297175862|gb|EFH35209.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus
           bv. 5 str. B3196]
          Length = 858

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|125718261|ref|YP_001035394.1| exonuclease RexA, putative [Streptococcus sanguinis SK36]
 gi|251764569|sp|A3CNT9|ADDA_STRSV RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|125498178|gb|ABN44844.1| Exonuclease RexA, putative [Streptococcus sanguinis SK36]
          Length = 1224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        R+  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGRNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   +++  + +  L   L       + T+ +F
Sbjct: 89  ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDHYY---DSERQALFSRLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+ + R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSAFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|294782871|ref|ZP_06748197.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA]
 gi|294481512|gb|EFG29287.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA]
          Length = 737

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++L+ +   +Q   AS    S  + A AGSGKT  +  R+  ++      P ++L +T T
Sbjct: 3   LNLLEKLNEKQREAASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++   +                                         
Sbjct: 63  NKAAKEMRERVEDLVGEVAKSC-------------------------------------- 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + T H+F   +++ +  E     +F I D +  +++I+   K
Sbjct: 85  TISTFHSFGMRLLRMYAAEVGYNPNFTIYDTDDQRRIIKAILK 127


>gi|293401242|ref|ZP_06645386.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305368|gb|EFE46613.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 759

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  +     +Q+ A     +   + A AGSGKT ++  R+  L+     +P+ +L +T T
Sbjct: 1   MSFLEHLNKQQVEAVHTVDQHLRIIAGAGSGKTRVVTTRIAYLIEEMQVYPNKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   +                                        +
Sbjct: 61  NKAAKEMKERVEGMLGEVAK--------------------------------------AV 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           ++ TIH+FC  ++++  LE     +F I D +  K ++ +A K  
Sbjct: 83  QISTIHSFCVRLLREDILEVGYPRNFTILDSDDQKSILRDAYKQM 127


>gi|225627865|ref|ZP_03785902.1| DNA helicase II [Brucella ceti str. Cudo]
 gi|254710455|ref|ZP_05172266.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis B2/94]
 gi|254714448|ref|ZP_05176259.1| ATP-dependent DNA helicase pcrA [Brucella ceti M644/93/1]
 gi|254717346|ref|ZP_05179157.1| ATP-dependent DNA helicase pcrA [Brucella ceti M13/05/1]
 gi|256031949|ref|ZP_05445563.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis M292/94/1]
 gi|256061471|ref|ZP_05451615.1| ATP-dependent DNA helicase pcrA [Brucella neotomae 5K33]
 gi|256160148|ref|ZP_05457842.1| ATP-dependent DNA helicase pcrA [Brucella ceti M490/95/1]
 gi|256255354|ref|ZP_05460890.1| ATP-dependent DNA helicase pcrA [Brucella ceti B1/94]
 gi|260169086|ref|ZP_05755897.1| ATP-dependent DNA helicase pcrA [Brucella sp. F5/99]
 gi|261219176|ref|ZP_05933457.1| UvrD/REP helicase [Brucella ceti M13/05/1]
 gi|261222555|ref|ZP_05936836.1| UvrD/REP helicase [Brucella ceti B1/94]
 gi|261318026|ref|ZP_05957223.1| UvrD/REP helicase [Brucella pinnipedialis B2/94]
 gi|261322237|ref|ZP_05961434.1| UvrD/REP helicase [Brucella ceti M644/93/1]
 gi|261325477|ref|ZP_05964674.1| UvrD/REP helicase [Brucella neotomae 5K33]
 gi|261758591|ref|ZP_06002300.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|265989057|ref|ZP_06101614.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1]
 gi|265998520|ref|ZP_06111077.1| UvrD/REP helicase [Brucella ceti M490/95/1]
 gi|294852740|ref|ZP_06793413.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL
           07-0026]
 gi|225617870|gb|EEH14915.1| DNA helicase II [Brucella ceti str. Cudo]
 gi|260921139|gb|EEX87792.1| UvrD/REP helicase [Brucella ceti B1/94]
 gi|260924265|gb|EEX90833.1| UvrD/REP helicase [Brucella ceti M13/05/1]
 gi|261294927|gb|EEX98423.1| UvrD/REP helicase [Brucella ceti M644/93/1]
 gi|261297249|gb|EEY00746.1| UvrD/REP helicase [Brucella pinnipedialis B2/94]
 gi|261301457|gb|EEY04954.1| UvrD/REP helicase [Brucella neotomae 5K33]
 gi|261738575|gb|EEY26571.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|262553144|gb|EEZ08978.1| UvrD/REP helicase [Brucella ceti M490/95/1]
 gi|264661254|gb|EEZ31515.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1]
 gi|294821329|gb|EFG38328.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL
           07-0026]
          Length = 858

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|114565925|ref|YP_753079.1| superfamily I DNA/RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336860|gb|ABI67708.1| ATP-dependent DNA helicase PcrA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 696

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 42/181 (23%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ++ +    +Q  A +       V A AGSGKT +L +R++ L+     P  ++ +T T  
Sbjct: 3   NIFADLNEQQKEAVAHVDGPCMVLAGAGSGKTRVLTRRIVHLVKQGIPPHRIMAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV+ ++  ++                                          +
Sbjct: 63  AAQEMRSRVISMLPDFNSQ---------------------------------------WI 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           QT H+ C  I++    E     +F+I D+ ++K LI+   +    +      EEL   F 
Sbjct: 84  QTFHSTCNRILRMDIQELGFDKYFSIIDDTEAKSLIKTLLRE--ENDYETKAEELLYIFK 141

Query: 194 E 194
           +
Sbjct: 142 Q 142


>gi|319952833|ref|YP_004164100.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319421493|gb|ADV48602.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 1041

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 8/175 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           +A+AGSGKT+ L +  L+++L++A   +   +L +T T  A AEM  R+++ +  +  + 
Sbjct: 10  NASAGSGKTYTLTKSYLKIILSSATSANYREILAITFTNKAVAEMKERIIDSLYDFGKVK 69

Query: 94  --DEILSAEITKIQGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             D   S  +  ++    +   +  +A+  L  IL       V TI  F   +++ F  +
Sbjct: 70  TADHAPSMFLDLVKELHIDVETLQKRAKTRLKEILHNYAFFDVSTIDKFTHRLIRTFAKD 129

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             +  +F +     +  L+ EA    +    ++         + + + + D+  +
Sbjct: 130 LKLPQNFEVI--LDTNLLLSEAVDRLVNKAGVEPELTKVLIAFALEKANEDKSWD 182


>gi|62290306|ref|YP_222099.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941]
 gi|82700230|ref|YP_414804.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024540|ref|YP_001935308.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237815813|ref|ZP_04594810.1| DNA helicase II [Brucella abortus str. 2308 A]
 gi|254730639|ref|ZP_05189217.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|260546849|ref|ZP_05822588.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260758354|ref|ZP_05870702.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|62196438|gb|AAX74738.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941]
 gi|82616331|emb|CAJ11388.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella
           melitensis biovar Abortus 2308]
 gi|189020112|gb|ACD72834.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237789111|gb|EEP63322.1| DNA helicase II [Brucella abortus str. 2308 A]
 gi|260095899|gb|EEW79776.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260668672|gb|EEX55612.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
          Length = 858

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|238855395|ref|ZP_04645706.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3]
 gi|260665364|ref|ZP_05866212.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US]
 gi|282932094|ref|ZP_06337551.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
 gi|313473070|ref|ZP_07813554.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153]
 gi|238831993|gb|EEQ24319.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3]
 gi|239528703|gb|EEQ67704.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153]
 gi|260560868|gb|EEX26844.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US]
 gi|281303773|gb|EFA95918.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
          Length = 754

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 72/211 (34%), Gaps = 53/211 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT +L +R+  L+      P  +L +T T  AA EM
Sbjct: 11  NPQQQEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + + T HA
Sbjct: 71  KERVQKLLGPAGQ--------------------------------------DVWMSTFHA 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------LASIMLDNNE 186
            C  I+++   +   + +F+IAD  +   LI+  +K              L++I    N+
Sbjct: 93  LCVRILRRDADKIGYSRNFSIADSSEQVTLIKHIEKDLNINPKQYNPRAILSAISNAKND 152

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTA 217
            L     +    S +   + ++S+I      
Sbjct: 153 LLNP--KDFEAASGNRPFDQIVSEIYKEYQK 181


>gi|325830815|ref|ZP_08164199.1| UvrD/REP helicase [Eggerthella sp. HGA1]
 gi|325487222|gb|EGC89665.1| UvrD/REP helicase [Eggerthella sp. HGA1]
          Length = 1231

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 39/188 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68
           ++L + T  ++           VSA AGSGKT  L QR+   LL  + P       +L +
Sbjct: 1   MNLSTCTPGQRQSIEHVRGPLLVSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AAAE+  RV   +                             +A  L    L   
Sbjct: 61  TFTEKAAAEIKARVKRTL-----------------------------RAEGLAEEALRV- 90

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
            G  + TIH  C  I++   L+  +   F I  + +      EA    +   + D+N+ +
Sbjct: 91  DGAWISTIHGMCARILRAHALDLGLDPAFGIMGDAE----RAEAVADAIDGALGDDNDII 146

Query: 189 KKAFYEIL 196
            +  Y  L
Sbjct: 147 ARGSYAAL 154


>gi|209559149|ref|YP_002285621.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes NZ131]
 gi|251764566|sp|B5XKR4|ADDA_STRPZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|209540350|gb|ACI60926.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes NZ131]
          Length = 1222

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|19745861|ref|NP_606997.1| putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes MGAS8232]
 gi|81632923|sp|Q8P1J2|ADDA_STRP8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|19748011|gb|AAL97496.1| putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes MGAS8232]
          Length = 1222

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|325262187|ref|ZP_08128925.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5]
 gi|324033641|gb|EGB94918.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5]
          Length = 741

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 41/161 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D ++  + E +  +       + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 5   DTLNDEQREAVYCT--NGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   S                                        + V
Sbjct: 63  AAGEMRERVDNLVGFGSE--------------------------------------SIWV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            T H+ C  I+++        ++F I D +  K L+++  K
Sbjct: 85  STFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLMKDVCK 125


>gi|254423127|ref|ZP_05036845.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335]
 gi|196190616|gb|EDX85580.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335]
          Length = 784

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 22/201 (10%)

Query: 13  TIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           T+D ++Q    Q  + +       V A AGSGKT  L  R+  L+L +   P  +L +T 
Sbjct: 4   TVDFLNQLNPAQRQSVEHFCGPLLVVAGAGSGKTRALTYRIANLILNHRVDPENILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ ++      L      A   K     P +  +    ++  T ++   G
Sbjct: 64  TNKAAREMKERIEKLFAEQESL------ARHGKPFHMLPEREQIQLRSYIYKTFIK---G 114

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSH-------FAIADEEQSKKLIEEAKKSTLASIMLD 183
           L V T HA C  I++ + +E   ++        F+I DE  ++ L++      ++ + LD
Sbjct: 115 LWVGTFHALCARILR-YDIEKYQSADGQRWTKSFSIFDESDAQSLVKSI---VISGLNLD 170

Query: 184 NNEELKKAFYEILEISNDEDI 204
           + +   ++    +  + ++  
Sbjct: 171 DRKFNPRSVRFAISNAKNQGF 191


>gi|312793467|ref|YP_004026390.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180607|gb|ADQ40777.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 714

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ++ + +   +Q  A         V A AGSGKT ++  R+  +L    A+P  +L +T T
Sbjct: 1   MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +++                                      ++   +
Sbjct: 61  NKAADEMKERIKRLVST-------------------------------------QSFSEM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I++        +++F I D +  ++L++E     
Sbjct: 84  WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRQQLLKECFDRL 128


>gi|255009480|ref|ZP_05281606.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147251|ref|ZP_07809444.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
 gi|313136018|gb|EFR53378.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
          Length = 786

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 56/163 (34%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL    +P  +L LT T  
Sbjct: 3   DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                             +AR+L            +
Sbjct: 63  AAREMKERIARQVGE--------------------------QRARYL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I D   SK L+    K  
Sbjct: 86  GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLLRSIIKEM 128


>gi|253565788|ref|ZP_04843243.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5]
 gi|251946067|gb|EES86474.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5]
          Length = 786

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL    +P  +L LT T  
Sbjct: 3   DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                             +AR L            +
Sbjct: 63  AAREMKERIARQVGE--------------------------QRARFL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I D   SK LI    K  
Sbjct: 86  GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128


>gi|139438971|ref|ZP_01772431.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC
           25986]
 gi|133775682|gb|EBA39502.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC
           25986]
          Length = 1210

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 38/189 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68
           +DL +    +  +     R  +VSA AGSGKT  L +R++  L   + P       +L +
Sbjct: 1   MDLSTLMPQQLQIVKTLDRPLFVSAGAGSGKTFTLTRRIVYALSPESGPFVEHLDQVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T TK AAAE+  RV   +       + +                              T 
Sbjct: 61  TFTKDAAAEIRDRVRRALIDEGMDEEAL------------------------------TV 90

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEE 187
               + TIH  C  I++   LE  I   F +  +    +L+++A +  LA     D   E
Sbjct: 91  DDAWISTIHGMCSRILRAHALELGIDPEFTVLTDTD--ELMDQAVEHVLARATAPDAAPE 148

Query: 188 LKKAFYEIL 196
           L  +   + 
Sbjct: 149 LAASLKALY 157


>gi|153006283|ref|YP_001380608.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152029856|gb|ABS27624.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 682

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 57/169 (33%), Gaps = 38/169 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           Q  +  +DL +    ++   +       V A AGSGKT ++  RV  LLL    P  +L 
Sbjct: 5   QRAAPMLDLSTLNPPQREAVTTTEGPLLVLAGAGSGKTRVIAHRVAYLLLQGVEPEQILA 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV  +                                          
Sbjct: 65  VTFTNKAAGEMRERVAALAGPPGV------------------------------------ 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + V T H+F   ++++    A +   FAI D      L++   +  
Sbjct: 89  --DVFVSTFHSFGLWLLKEEHKAAGLPKRFAICDAGDQAALVKRCMREV 135


>gi|125622886|ref|YP_001031369.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|251764529|sp|A2RH77|ADDA_LACLM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|124491694|emb|CAL96613.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069624|gb|ADJ59024.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 1203

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 37/231 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +        ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+
Sbjct: 4   VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   +      S +   A                   H L   L+      + T+
Sbjct: 64  ELRMRLERDLKKARQESSDDEEA-------------------HRLTLALQNLSNADIGTM 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            +F + + +      NI  +F I  D+ +S  + +E  +  + S +  +           
Sbjct: 105 DSFTQKLTKANFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSADES--------- 155

Query: 196 LEISNDEDIETLISDIISNRTAL---KLIFFFFSYL----WRRKIIEKSLW 239
           L IS D+  E LI +   +R  L   K+++  + +          +E    
Sbjct: 156 LNISKDK-FEKLIKNFSKDRNILGFQKVVYTIYRFASATENPISWLENQFL 205


>gi|2909716|gb|AAC12966.1| exonuclease RexA [Lactococcus lactis subsp. cremoris MG1363]
          Length = 1173

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 37/231 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +        ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+
Sbjct: 4   VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   +      S +   A                   H L   L+      + T+
Sbjct: 64  ELRMRLERDLKKARQESSDDEEA-------------------HRLTLALQNLSNADIGTM 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            +F + + +      NI  +F I  D+ +S  + +E  +  + S +  +           
Sbjct: 105 DSFTQKLTKANFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSADES--------- 155

Query: 196 LEISNDEDIETLISDIISNRTAL---KLIFFFFSYL----WRRKIIEKSLW 239
           L IS D+  E LI +   +R  L   K+++  + +          +E    
Sbjct: 156 LNISKDK-FEKLIKNFSKDRNILGFQKVVYTIYRFASATENPISWLENQFL 205


>gi|256852263|ref|ZP_05557649.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN]
 gi|260661705|ref|ZP_05862616.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN]
 gi|282934843|ref|ZP_06340076.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
 gi|297205570|ref|ZP_06922966.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16]
 gi|256615309|gb|EEU20500.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN]
 gi|260547452|gb|EEX23431.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN]
 gi|281301074|gb|EFA93385.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
 gi|297150148|gb|EFH30445.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16]
          Length = 754

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 72/211 (34%), Gaps = 53/211 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT +L +R+  L+      P  +L +T T  AA EM
Sbjct: 11  NPQQQEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + + T HA
Sbjct: 71  KERVQKLLGPAGQ--------------------------------------DVWMSTFHA 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------LASIMLDNNE 186
            C  I+++   +   + +F+IAD  +   LI+  +K              L++I    N+
Sbjct: 93  LCVRILRRDADKIGYSRNFSIADSSEQVTLIKHIEKDLNINPKQYNPRAILSAISNAKND 152

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTA 217
            L     +    S +   + ++S+I      
Sbjct: 153 LLNP--KDFESASGNRPFDQVVSEIYKEYQK 181


>gi|331000444|ref|ZP_08324119.1| putative DNA helicase II [Parasutterella excrementihominis YIT
           11859]
 gi|329571776|gb|EGG53456.1| putative DNA helicase II [Parasutterella excrementihominis YIT
           11859]
          Length = 781

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 45/218 (20%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S  K +    +   +SA + A AGSGKT +L  R+  LL  N AHPS +L +T T  AA 
Sbjct: 7   SLNKQQAQAVTAEPKSALILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+  +I                                         P  + V T 
Sbjct: 67  EMLARLQNMIPI--------------------------------------NPRAMWVGTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H  C  +++    EA + S FAI D      +I+   K+      +D  E   +     +
Sbjct: 89  HGLCNRLLRLHHQEAGLPSTFAILDMSDQLGVIKRVMKAN----GIDTEEFKPREVQNFI 144

Query: 197 EISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRK 232
               +E      + S    ++  +++   + + L R  
Sbjct: 145 NRCKEEGKRASEVYSKFSKDKAYIQIYAMYEAVLQREG 182


>gi|148558984|ref|YP_001259307.1| DNA helicase II [Brucella ovis ATCC 25840]
 gi|148370241|gb|ABQ60220.1| DNA helicase II [Brucella ovis ATCC 25840]
          Length = 858

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|116074476|ref|ZP_01471738.1| UvrD/REP helicase [Synechococcus sp. RS9916]
 gi|116069781|gb|EAU75533.1| UvrD/REP helicase [Synechococcus sp. RS9916]
          Length = 795

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 17/173 (9%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P+ +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++         + S++  +     P          +   + +    L
Sbjct: 61  NKAAREMKERLELLLA------QRLASSQFGQPWSTLPAVEQRQLRSRIYREVTK---EL 111

Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
            + T HA    +++    +F     +  T  F+I DE  ++ L++E     L 
Sbjct: 112 WIGTFHALFARMLRFDIDKFKDAEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|289705452|ref|ZP_06501846.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
 gi|289557837|gb|EFD51134.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
          Length = 963

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    +Q  A +       + A AGSGKT +L  R+  LL    A P  +L +T T  
Sbjct: 62  LVAGLNPQQAAAVTHTGAPLLIVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNK 121

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV  +I                                        T   + +
Sbjct: 122 AAAEMRERVAGLIGP--------------------------------------TAQRMWI 143

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+    +++       + S F I D   S +L+    K 
Sbjct: 144 STFHSSAVRLLRNEAANIGLKSTFTIYDSADSLRLVTTVAKQ 185


>gi|254697750|ref|ZP_05159578.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260762180|ref|ZP_05874523.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260672612|gb|EEX59433.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 853

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|221124374|ref|XP_002163232.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 815

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 46/235 (19%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
           +SF     T  L+     EQL A   P   A + A AGSGKT +L  R+  LL      P
Sbjct: 2   HSFAAAGSTPPLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQNGYVSP 61

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T  AA EM  R+  ++                                    
Sbjct: 62  GGILAVTFTNKAAKEMMTRLSAMLPV---------------------------------- 87

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                  G+ + T H  C   ++     A +   F I D +        A K       +
Sbjct: 88  ----NVRGMWIGTFHGLCNRFLRAHFKNAGLPQAFQILDTQDQLS----AIKRLCKQYKI 139

Query: 183 DNNEELKKAFYEILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           D+     K     +    +E +    +++     R  +++   +     R  +++
Sbjct: 140 DDERFPPKQMAWFIGNCKEEGLRPKDVVASDPDTRKKIEIYQLYEDQCQREGVVD 194


>gi|163815569|ref|ZP_02206942.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759]
 gi|158449206|gb|EDP26201.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759]
          Length = 789

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 43/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +      +Q           + A AGSGKT ++  RV  L+     +P  +L +T T  A
Sbjct: 17  MAGLNDMQQQACEHVDGPLLILAGAGSGKTRVITHRVAYLMDHEGVNPLNILAITFTNKA 76

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  I+   +                                        + V 
Sbjct: 77  AREMRDRVDLIVGEGA--------------------------------------DRVWVS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I++++  +     +F I D +  K       KS L    +D     +K F  
Sbjct: 99  TFHSLCVRILRRYADKIGYEKNFDIYDSDDQKS----TVKSILKDFQIDPKRYPEKMFMS 154

Query: 195 ILEISNDE 202
            +  + ++
Sbjct: 155 EISKAKEK 162


>gi|153806585|ref|ZP_01959253.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185]
 gi|149131262|gb|EDM22468.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185]
          Length = 817

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 60/171 (35%), Gaps = 38/171 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + I +    Q  A       + V A AGSGKT +L  ++  LL    +P  +L LT T  
Sbjct: 4   NYIEELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                           M +AR+L            +
Sbjct: 64  AAREMKERIARQVG--------------------------MERARYL-----------WM 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
            T H+    I++        TS F I D   SK L+       L   + ++
Sbjct: 87  GTFHSIFSRILRAEASYIGFTSKFTIYDTADSKSLLITIIDEVLKEKVHED 137


>gi|306843240|ref|ZP_07475850.1| DNA helicase II [Brucella sp. BO2]
 gi|306286563|gb|EFM58142.1| DNA helicase II [Brucella sp. BO2]
          Length = 863

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|71910408|ref|YP_281958.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005]
 gi|71853190|gb|AAZ51213.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005]
          Length = 1222

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCRDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E         M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|303257893|ref|ZP_07343902.1| DNA helicase II [Burkholderiales bacterium 1_1_47]
 gi|302859236|gb|EFL82318.1| DNA helicase II [Burkholderiales bacterium 1_1_47]
          Length = 787

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 45/218 (20%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S  K +    +   +SA + A AGSGKT +L  R+  LL  N AHPS +L +T T  AA 
Sbjct: 13  SLNKQQAQAVTAEPKSALILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKAAK 72

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+  +I                                         P  + V T 
Sbjct: 73  EMLARLQNMIPI--------------------------------------NPRAMWVGTF 94

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H  C  +++    EA + S FAI D      +I+   K+      +D  E   +     +
Sbjct: 95  HGLCNRLLRLHHQEAGLPSTFAILDMSDQLGVIKRVMKAN----GIDTEEFKPREVQNFI 150

Query: 197 EISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRK 232
               +E      + S    ++  +++   + + L R  
Sbjct: 151 NRCKEEGKRASEVYSKFSKDKAYIQIYAMYEAVLQREG 188


>gi|13471509|ref|NP_103075.1| DNA helicase II [Mesorhizobium loti MAFF303099]
 gi|14022251|dbj|BAB48861.1| DNA helicase II [Mesorhizobium loti MAFF303099]
          Length = 817

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 42/191 (21%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72
           D +     EQ LA + T     V A AG+GKT +L  R+  +L      PS +L +T T 
Sbjct: 12  DYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGKAFPSQILAVTFTN 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I   +                                      G   
Sbjct: 72  KAAREMKQRIGILIGEGNVE------------------------------------GMPW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++    A + S F I D +   +LI++     + +  LD+     K F
Sbjct: 96  LGTFHSIGVKLLRRHAELAGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 151

Query: 193 YEILEISNDED 203
            ++++   ++ 
Sbjct: 152 AQMIDGWKNKG 162


>gi|60682035|ref|YP_212179.1| putative helicase [Bacteroides fragilis NCTC 9343]
 gi|60493469|emb|CAH08255.1| putative helicase [Bacteroides fragilis NCTC 9343]
          Length = 786

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL    +P  +L LT T  
Sbjct: 3   DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                             +AR L            +
Sbjct: 63  AAREMKERIARQVGE--------------------------QRARFL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I D   SK LI    K  
Sbjct: 86  GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128


>gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199692|emb|CAE49351.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae]
          Length = 805

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL      +Q  A +   S   + A AGSGKT +L +R+  L+ +    P  +L +T T 
Sbjct: 22  DLTEGLNPQQKAAVEHYGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTN 81

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV  ++   +                                        + 
Sbjct: 82  KAAAEMRERVSSLVGPVAQ--------------------------------------RMW 103

Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I+++       + ++F I D + SK+L+    K  
Sbjct: 104 VSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLLSMISKDF 148


>gi|53713817|ref|YP_099809.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46]
 gi|52216682|dbj|BAD49275.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46]
          Length = 786

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL    +P  +L LT T  
Sbjct: 3   DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                             +AR L            +
Sbjct: 63  AAREMKERIARQVGE--------------------------QRARFL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I D   SK LI    K  
Sbjct: 86  GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128


>gi|301163499|emb|CBW23050.1| putative helicase [Bacteroides fragilis 638R]
          Length = 786

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL    +P  +L LT T  
Sbjct: 3   DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                             +AR L            +
Sbjct: 63  AAREMKERIARQVGE--------------------------QRARFL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I D   SK LI    K  
Sbjct: 86  GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128


>gi|295093819|emb|CBK82910.1| Superfamily I DNA and RNA helicases [Coprococcus sp. ART55/1]
          Length = 782

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 63/188 (33%), Gaps = 43/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +      ++           + A AGSGKT ++  RV  L+     +P  +L +T T  A
Sbjct: 1   MAGLNDMQEQACEHVDGPLLILAGAGSGKTRVITHRVAYLMEHEGVNPLNILAITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  I+   +                                        + V 
Sbjct: 61  AREMRERVDLIVGDGA--------------------------------------DRVWVS 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I++++  +     +F I D +  K       KS L    +D     +K F  
Sbjct: 83  TFHSLCVRILRRYADKIGYGKNFDIYDSDDQKS----TVKSILKDFQIDPKRYPEKMFMA 138

Query: 195 ILEISNDE 202
            +  + ++
Sbjct: 139 EISKAKEK 146


>gi|302536344|ref|ZP_07288686.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
 gi|302445239|gb|EFL17055.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
          Length = 825

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D +++   +            + A AGSGKT +L  R+  LL   N HP  +L +T T
Sbjct: 65  LLDGLNE--QQAAAVVHAGSPLLIVAGAGSGKTRVLTHRIGHLLSARNVHPGQILAITFT 122

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   +                                        +
Sbjct: 123 NKAAGEMKERVEGLVGPRA--------------------------------------NAM 144

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++       TS F+I D   SK+L+    +  
Sbjct: 145 WVSTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 189


>gi|167766232|ref|ZP_02438285.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1]
 gi|167712059|gb|EDS22638.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1]
 gi|291559884|emb|CBL38684.1| ATP-dependent DNA helicase PcrA [butyrate-producing bacterium
           SSC/2]
          Length = 733

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + +Q           + A AGSGKT +L  R+  L+    +P  ++ +T T  AA EM 
Sbjct: 8   NEQQQEAVFCTEGPLLLLAGAGSGKTRVLTHRIAYLMDQGVNPYHIMAITFTNKAAKEMR 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +++   +                                        + V T H+ 
Sbjct: 68  ERVDDLVGFGAEH--------------------------------------IWVSTFHST 89

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           C  I+++   +    + F I D +  K LI++  K 
Sbjct: 90  CVRILRRHIDKLGYGNSFTIYDADDQKSLIKQICKQ 125


>gi|317497585|ref|ZP_07955903.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895144|gb|EFV17308.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 733

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + +Q           + A AGSGKT +L  R+  L+    +P  ++ +T T  AA EM 
Sbjct: 8   NEQQQEAVFCTEGPLLLLAGAGSGKTRVLTHRIAYLMDQGVNPYHIMAITFTNKAAKEMR 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +++   +                                        + V T H+ 
Sbjct: 68  ERVDDLVGFGAEH--------------------------------------IWVSTFHST 89

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           C  I+++   +    + F I D +  K LI++  K 
Sbjct: 90  CVRILRRHIDKLGYGNSFTIYDADDQKSLIKQICKQ 125


>gi|253995787|ref|YP_003047851.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253982466|gb|ACT47324.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 736

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 45/225 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   ++QL A   P +SA + A AGSGKT +L  R+  L+      P+ LL +T T  
Sbjct: 11  LLAGLNNKQLEAVTLPQQSALILAGAGSGKTRVLTARIAWLIQTEQVSPTGLLAVTFTNK 70

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                                           G+ V
Sbjct: 71  AAKEMLTRITASLPI--------------------------------------NTRGMWV 92

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    EA + + F I D      +I+   K       +D+ +   K   
Sbjct: 93  GTFHGLCNRLLRAHHREAGLPASFQILDIADQLSMIKRLMKLM----NVDDEKFPPKQVQ 148

Query: 194 EILEISNDEDIET-LISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
             +    DE +    +     +   L+ IF  +    +R  +   
Sbjct: 149 NYINGCKDEGLRAHAVDAYDPHSQKLREIFEEYDKQCQRDGVADF 193


>gi|227822621|ref|YP_002826593.1| DNA helicase II [Sinorhizobium fredii NGR234]
 gi|227341622|gb|ACP25840.1| DNA helicase II [Sinorhizobium fredii NGR234]
          Length = 871

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 43/193 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +S    EQ  A +       V A AG+GKT +L  R+  +L    A+PS +L +T T 
Sbjct: 42  DYLSGLNPEQREAVETLEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTN 101

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 102 KAAREMKERIGVLVGHAVE-------------------------------------GMPW 124

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++      + S F I D +   +LI++     + +  LD+     K F
Sbjct: 125 LGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 180

Query: 193 YEILEISNDEDIE 205
             +++   ++ ++
Sbjct: 181 AGMIDTWKNKGLD 193


>gi|254383079|ref|ZP_04998433.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1]
 gi|194341978|gb|EDX22944.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1]
          Length = 847

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 65/188 (34%), Gaps = 43/188 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +            + A AGSGKT +L  R+  LL A   HP  +L +T T  AA EM
Sbjct: 70  NTEQAAAVVHAGSPLLIVAGAGSGKTRVLTHRIGHLLAARGVHPGQILAITFTNKAAGEM 129

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 130 RERVEGLVGPRA--------------------------------------NAMWVSTFHS 151

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I+++       TS F+I D   SK+L+    +       LD  +   KAF   +  
Sbjct: 152 ACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDM----DLDPKKFPPKAFNAKISN 207

Query: 199 SNDEDIET 206
             +E I+ 
Sbjct: 208 LKNELIDD 215


>gi|167762854|ref|ZP_02434981.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC
           43183]
 gi|167699194|gb|EDS15773.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC
           43183]
          Length = 781

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 3   DYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYRPWDILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   + A                           +ARHL            +
Sbjct: 63  AAREMKERIARQVGA--------------------------ERARHL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+     +   T  F + D   SK L+    K  
Sbjct: 86  GTFHSIFLRILHAEAAQIGFTPKFTVYDTADSKSLLRSIIKEM 128


>gi|225351915|ref|ZP_03742938.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157162|gb|EEG70501.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 905

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 39/156 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI     +Q+ A     ++  + A AGSGKT +L +R+  LL      S++L +T T  A
Sbjct: 31  LIKDLNPQQMEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKA 90

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+  ++   +                                        + + 
Sbjct: 91  AAEMRERLASLVGPEAEH--------------------------------------MWIS 112

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H+ C  I+++   E  +TS F+I D    ++L++
Sbjct: 113 TFHSACVRILRRDGKEIGLTSGFSIYDTADCERLVK 148


>gi|329955139|ref|ZP_08296096.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056]
 gi|328526138|gb|EGF53157.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056]
          Length = 785

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 7   DYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                           + +ARHL            +
Sbjct: 67  AAREMKERIARQVG--------------------------IERARHL-----------WM 89

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+         TS F I D   SK L+    K  
Sbjct: 90  GTFHSIFLRILHAEAARIGFTSKFTIYDTADSKSLLRSIIKEM 132


>gi|307152628|ref|YP_003888012.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822]
 gi|306982856|gb|ADN14737.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822]
          Length = 772

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 19/178 (10%)

Query: 10  HSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
            S ++D + Q    Q  A +       V A AGSGKT  L  R+  L+      P  +L 
Sbjct: 1   MSVSLDYLGQLNPSQRRAVEHYCGPLLVVAGAGSGKTRALTYRIAHLIRYHQVEPEHILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  +                    G++ +     + + LL  +  T
Sbjct: 61  VTFTNKAAREMRERLERLFADELAQEKY----------GQRFSLLSEYEQKQLLSKVYRT 110

Query: 128 -PGGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLA 178
               L + T H+ C  I++    ++  E   +  S+F+I DE  ++ LI+      L 
Sbjct: 111 VTKKLWIGTFHSLCSRILRYDINKYQDERGRSWKSNFSIVDESDAQSLIKSIVTKELQ 168


>gi|327470754|gb|EGF16210.1| exonuclease RexA [Streptococcus sanguinis SK330]
          Length = 1224

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L       L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVRQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   ++D  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDHYY---DSERQALFSRLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPKRWLEETFL 223


>gi|291549932|emb|CBL26194.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14]
          Length = 768

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 41/163 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D +++ + E +  +D      + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 5   DKLNEPQREAVYHTD--GPLLILAGAGSGKTRVLTHRIAYLIGERGVNPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   +                                        + V
Sbjct: 63  AAEEMRQRVDNLVGFGAE--------------------------------------SVWV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C  I+++F       +HF I D +  K LI+E  +  
Sbjct: 85  STFHSACVRILRRFIDRLGYENHFTIYDTDDQKTLIKEVCRKV 127


>gi|269468160|gb|EEZ79862.1| ATP-dependent DNA helicase [uncultured SUP05 cluster bacterium]
          Length = 1058

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 5/199 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            ++++  A D TRS  V A AGSGKT +L QR L+LL     P  ++ +T T  A  E++
Sbjct: 3   DQAQRDEALDVTRSFIVQAPAGSGKTELLAQRYLKLLSICDDPENVMAMTFTNKAVDELT 62

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RVL  + +    ++E    +  K          M ++++    +L+ P  LK+ TI   
Sbjct: 63  ERVLSSLKS----TNEPRPKQAHKQITYDLALKVMERSQNRNWQLLQMPQRLKIFTIDGL 118

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              I  ++P    +     +A + + KK+   A +  L  I  + + ++  +    L+ +
Sbjct: 119 SSLITGRYPTPLQLVPPRIMAQDWERKKVYRLAAEQVLVMIDDEEHSKVISSLLLYLD-N 177

Query: 200 NDEDIETLISDIISNRTAL 218
           N E    L + +++ R   
Sbjct: 178 NIEKFYRLTTSMLAKRDQW 196


>gi|298385429|ref|ZP_06994987.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14]
 gi|298261570|gb|EFI04436.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14]
          Length = 788

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + I +    Q  A       + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 4   NYIEELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                           M +AR+L            +
Sbjct: 64  AAREMKDRIARQVG--------------------------MERARYL-----------WM 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I D   SK LI    K  
Sbjct: 87  GTFHSVFSRILRAEAKYIGFTSQFTIYDSADSKSLIRSIIKEM 129


>gi|219856415|ref|YP_002473537.1| hypothetical protein CKR_3072 [Clostridium kluyveri NBRC 12016]
 gi|219570139|dbj|BAH08123.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 754

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL +    EQ  A         + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 10  MDLKNLLNKEQYEAVTTVEGPLLILAGAGSGKTRVLTYRIAHMIKDLNIYPSKILAITFT 69

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                                       +    +
Sbjct: 70  NKAAGEMKDRIRKLVG--------------------------------------DEVDSM 91

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +FAI D    K LI++  K  
Sbjct: 92  WVSTFHSSCVRILRREIDKLGYNRNFAIYDSYDQKVLIKQCMKEL 136


>gi|296127315|ref|YP_003634567.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
 gi|296019131|gb|ADG72368.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
          Length = 666

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 39/167 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++             A AGSGKT ++ +R+  L+     PS +L +T T  AA+EM 
Sbjct: 6   NEEQRQAVEHINGPLLALAGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAASEMR 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +++                                       E P  L V T H+F
Sbjct: 66  ERITKLLK--------------------------------------EKPKQLVVSTFHSF 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185
           C  +++    +    S+F+I     S+ LI    +   + ++  D N
Sbjct: 88  CVRVLKGDIEKLGYKSNFSIYSSSDSRTLIRNILREIKINTLNYDEN 134


>gi|300775551|ref|ZP_07085412.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910]
 gi|300505578|gb|EFK36715.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910]
          Length = 776

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D +      Q  A         V A AGSGKT +L  R+  L+     P  +L LT T 
Sbjct: 1   MDYLKGLNESQYEAVTSLQGPLMVLAGAGSGKTRVLTMRIAHLIHNGIDPFNILALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++                                            L 
Sbjct: 61  KAAREMKDRIAKVVGE-------------------------------------SNARSLW 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++         S+F I D++ +  +I++  K  
Sbjct: 84  MGTFHSVFARILRIEAHYLGYPSNFTIYDQQDALNVIKKVLKDM 127


>gi|327489960|gb|EGF21749.1| exonuclease RexA [Streptococcus sanguinis SK1058]
          Length = 1224

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   ++D  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|325962273|ref|YP_004240179.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468360|gb|ADX72045.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 830

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 45/197 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            ++ ++ ++  + E +  + P     + A AGSGKT +L  R+  L+    AH   +L +
Sbjct: 56  AAQLLEGLNPQQEEAVKHAGPA--LLIVAGAGSGKTRVLSNRIAYLIATGRAHHGEILAI 113

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AAAEM  R+  ++   + +                                    
Sbjct: 114 TFTNKAAAEMRERIEALVGGRAKI------------------------------------ 137

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             + + T H+ C  I++Q      + S+F+I D   S +L+ +  K     + LD  +  
Sbjct: 138 --MWISTFHSSCVRILRQEAANVGLKSNFSIYDSADSLRLVTQVSK----GLDLDPKKFA 191

Query: 189 KKAFYEILEISNDEDIE 205
            KA    +    +E I+
Sbjct: 192 PKAIQHKISALKNELID 208


>gi|94990159|ref|YP_598259.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270]
 gi|251764561|sp|Q1JHM1|ADDA_STRPD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|94543667|gb|ABF33715.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270]
          Length = 1222

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E         M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|323345466|ref|ZP_08085689.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269]
 gi|323093580|gb|EFZ36158.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269]
          Length = 790

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 47/208 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            +  +D ++ ++ + +  +D      V A AGSGKT +L  ++  LL +   P  +L LT
Sbjct: 1   MNSILDQLNDSQRKAVEYTD--GPQLVIAGAGSGKTRVLTYKIAYLLHSGMKPWNILALT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  +I                                       +   
Sbjct: 59  FTNKAANEMKSRIGNLIGH-------------------------------------DAVH 81

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            L++ T H+    I++         S+F I DE  S+ LI    KS +  + LD+     
Sbjct: 82  LLQIGTFHSVFSRILRVEAELLGYNSNFTIYDEADSRSLI----KSIIKEMGLDDKLYKP 137

Query: 190 KAFYEILEISNDEDIETLISDIISNRTA 217
              +  + ++ +     LI+D++ N   
Sbjct: 138 AGVHNKISMAKNR----LITDVLYNSDK 161


>gi|251764601|sp|Q9A0H3|ADDA_STRP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
          Length = 1222

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCRDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E         M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|94994076|ref|YP_602174.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750]
 gi|251764562|sp|Q1J7E4|ADDA_STRPF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|94547584|gb|ABF37630.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750]
          Length = 1222

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 28  LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 88  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E      +  M   
Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQGVLKQEVFSKLFSEFMNQK 188

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239


>gi|297616808|ref|YP_003701967.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144645|gb|ADI01402.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680]
          Length = 709

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 41/166 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            + ++ ++Q + E +L  D      V A AGSGKT +L  R+  L      P  +L +T 
Sbjct: 1   MKLVEGLNQEQKEAVLHVD--GPCLVLAGAGSGKTRVLTTRLAYLCHTGIRPRNILAITF 58

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  +I  ++                                       G
Sbjct: 59  TNKAAREMKERVERLIPGFT---------------------------------------G 79

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             +QT HA C  I++Q       +  F+I DE + + L++E  +  
Sbjct: 80  QWIQTFHATCYRILRQEIDRLGYSRDFSIVDEAEQRALVKECLQDL 125


>gi|139439548|ref|ZP_01772980.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC
           25986]
 gi|133775101|gb|EBA38921.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC
           25986]
          Length = 966

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D+ S   +++           V A AGSGKT +L  R+  +L      P  +L +T T
Sbjct: 56  LVDIDSLNPAQREAVLSTEGPLLVLAGAGSGKTRVLTFRIAHMLGDLGVKPWQVLAITFT 115

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  +I + +                                       G+
Sbjct: 116 NKAAAEMRERLAALIPSGTR--------------------------------------GM 137

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  ++++       T  F I D++ SK+++ +  ++ 
Sbjct: 138 WVCTFHAMCVRMLREDADLLGYTGQFTIYDDDDSKRMVRDIMQAL 182


>gi|254476738|ref|ZP_05090124.1| UvrD/REP helicase domain protein [Ruegeria sp. R11]
 gi|214030981|gb|EEB71816.1| UvrD/REP helicase domain protein [Ruegeria sp. R11]
          Length = 786

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + + +   +      + A AG+GKT  L  R++ LL+   A P+ +L +T T
Sbjct: 27  YLDGLNPAQRQAVECLE--GPVLMLAGAGTGKTKALTARIVHLLMTGSAKPNEILAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                             
Sbjct: 85  NKAAREMKDRVGAMLGQAIEGVP------------------------------------- 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  ++++      + S+F I D +   +L+++     + +  +D+     + 
Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIKAEGIDDKRWPARM 163

Query: 192 FYEILEISNDEDI 204
              I++   +  +
Sbjct: 164 LAGIIDDWKNRAL 176


>gi|86156526|ref|YP_463311.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773037|gb|ABC79874.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 797

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 64/176 (36%), Gaps = 44/176 (25%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT ++V R+ RL+      P  +L +T T 
Sbjct: 11  DLLQDLNDAQREAVLHDDGPLLVLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTN 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                        L 
Sbjct: 71  KAAGEMRERLERLLGPLAR--------------------------------------ELW 92

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           VQT HAF    +++    A +   FAI D++   +L     K  LA + LD  E L
Sbjct: 93  VQTFHAFGARFLRREAARAGLPPSFAIYDDDDQLRL----VKRILAEVGLDEAEGL 144


>gi|294339627|emb|CAZ87986.1| DNA helicase II [Thiomonas sp. 3As]
          Length = 781

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 44/192 (22%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           LI Q   EQ  A   P  +A + A AGSGKT +L  R+  L+      P+ +L +T T  
Sbjct: 4   LIQQLNPEQRAAVTLPAENALILAGAGSGKTRVLTTRIAWLISTGQVTPAGILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                                           G+ +
Sbjct: 64  AAKEMMARLSAQLPIPVR--------------------------------------GMWI 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C   ++    EA +   F I D +        + K  L ++ +D+     K   
Sbjct: 86  GTFHGLCNRFLRAHWREAGLPQTFQILDIQDQLA----SIKRLLKALNVDDERHPPKQVQ 141

Query: 194 EILEISNDEDIE 205
             +  + D+ + 
Sbjct: 142 WFINGAKDQGLR 153


>gi|257066475|ref|YP_003152731.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
 gi|256798355|gb|ACV29010.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
          Length = 731

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 43/188 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ++L    K ++           V A AGSGKT +L   +  L+   N  P  ++ +T T 
Sbjct: 1   MNLDGLNKMQRKAVLHDEGPLLVLAGAGSGKTRVLTTSIAYLIEEKNIDPRNIIAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++                                            L 
Sbjct: 61  KAANEMKERISKLLGMDV--------------------------------------SHLW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I++    +     +F I D    K LI+E     +  +   ++   + A 
Sbjct: 83  IGTFHSICARILRMNIDKIGYDRNFTIYDTSDQKTLIKE----IINELGYKDDIAPRDAL 138

Query: 193 YEILEISN 200
             I    N
Sbjct: 139 NVISSAKN 146


>gi|15674822|ref|NP_268996.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pyogenes M1 GAS]
 gi|13621954|gb|AAK33717.1| putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes M1 GAS]
          Length = 1210

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 28/238 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            QE+    D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 16  LQENERCRDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 75

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+   + +    + +                    + +  L   L
Sbjct: 76  FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 116

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           ++     + T+ AF + ++ ++     I+S F I  D+ +   L +E         M   
Sbjct: 117 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQK 176

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + +A  +    S +    +   +++          F  S    +  ++++  S A
Sbjct: 177 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 227


>gi|84687310|ref|ZP_01015190.1| Putative uvrD/DNA Helicase II [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664743|gb|EAQ11227.1| Putative uvrD/DNA Helicase II [Rhodobacterales bacterium HTCC2654]
          Length = 794

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           S  +D ++  + E + A D      + A AG+GKT  L  R+  LL  + A P+ +L +T
Sbjct: 8   SPYLDELNPAQREAVEALD--GPVLMLAGAGTGKTKALTARIAHLLNTHTARPNEILAVT 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV   +                                          G
Sbjct: 66  FTNKAAREMKDRVGRHLGEAVE-------------------------------------G 88

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T HA C  ++++      + S+F I D +   +L+++     +A+  +D      
Sbjct: 89  MPWLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQIRLMKQ----LIAAENIDEKRWPA 144

Query: 190 KAFYEILEISNDEDI 204
           +    I++   +  I
Sbjct: 145 RLLAGIIDNWKNRAI 159


>gi|322807582|emb|CBZ05157.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum H04402
           065]
          Length = 738

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL ++   EQ   A        + A AGSGKT +L  R+  ++   + +PS +L +T T
Sbjct: 1   MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLDIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                           G+
Sbjct: 61  NKAAGEMKERIKALVGDVVE--------------------------------------GM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +F I D    K L+++  +  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127


>gi|313906496|ref|ZP_07839829.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
 gi|313468662|gb|EFR64031.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
          Length = 799

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++ +     +Q  A +       + A AGSGKT +L  R+  ++      P  ++ +T T
Sbjct: 1   MNYLENLNPQQKEAVEYTEGPLLILAGAGSGKTRVLTCRIAHMIAEKGVAPWNIMAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++   +                                        +
Sbjct: 61  NKAAGEMRERVDQLVGQGA--------------------------------------DNI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I++++         F I D + SK++++E  ++ 
Sbjct: 83  WVSTFHSSCCRILRRYIDRIGYDRSFTIYDTDDSKQVMKEVIRAL 127


>gi|78211730|ref|YP_380509.1| ATP-dependent DNA helicase Rep [Synechococcus sp. CC9605]
 gi|78196189|gb|ABB33954.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9605]
          Length = 796

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 21/175 (12%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P+ +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPG 129
             AA EM  R+           + +L+  + + Q  +P  +     +  L + +  E   
Sbjct: 61  NKAAREMKERL-----------EVLLAQRLAQSQYGQPWSTLPPVEQRQLRSCIYREVTK 109

Query: 130 GLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
            L + T HA    +++    +F     +  T  F+I DE  ++ L++E     L 
Sbjct: 110 ELWIGTFHALFARMLRYDIDKFKDAEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|329945395|ref|ZP_08293158.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529017|gb|EGF55948.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 974

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 40/168 (23%)

Query: 11  SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           S+  +L+S     Q  A +       + A AGSGKT +L  R+  L+    A P  +L +
Sbjct: 115 SDPAELLSGLNPAQEAAVTHVGAPLLIIAGAGSGKTRVLTHRIAHLIATGRARPGEILAI 174

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AAAEM  RV  ++                                          
Sbjct: 175 TFTNKAAAEMRERVTALVGPAGE------------------------------------- 197

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + V T H+ C  I+++    A + S F+I D   S +LI    +  
Sbjct: 198 -RMWVSTFHSACVRILRREHEAAGLRSTFSIYDAADSTRLITLIVREL 244


>gi|311746368|ref|ZP_07720153.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1]
 gi|126575253|gb|EAZ79585.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1]
          Length = 1069

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 8/186 (4%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA--WS 90
               ++AGSGKT+ L    L+L L + H    +L +T T  A  EM  R++E +    ++
Sbjct: 7   IIYKSSAGSGKTYTLTLEYLKLALQSPHAFKQILAVTFTNKATQEMKERIVEELKRLRFN 66

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              DE +  E+        +   +  A+  L  IL   G   V TI +F + +++ F  E
Sbjct: 67  VKPDEKMDRELMNSLEVDESGLKV-LAQQTLTAILHDYGRFSVSTIDSFFQKVVRAFARE 125

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISNDEDIETLI 208
            ++ + F +  E     ++E      +  +M D   ++ L    YE ++     DI   I
Sbjct: 126 IDLNAKFDV--ELDQDAVLERVVDRVVMLVMEDEFLHKWLVDYAYEQIQNGKSWDIRRNI 183

Query: 209 SDIISN 214
             +   
Sbjct: 184 RGLGKQ 189


>gi|300863743|ref|ZP_07108674.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506]
 gi|300338250|emb|CBN53820.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506]
          Length = 794

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 21/200 (10%)

Query: 10  HSETIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
            + T D +SQ   S++           V A AGSGKT  L  RV  L+  +   P  +L 
Sbjct: 13  MTPTTDFLSQLNPSQRQSVEHFCGPLLVVAGAGSGKTRALTYRVANLIRTHRVDPDNILA 72

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ ++              +     GK        +   L   +   
Sbjct: 73  VTFTNKAAREMKERIEKLFAT----------GQAEAKYGKPLEALAPDEQARLRSGVYRN 122

Query: 128 P-GGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180
               L V T H+ C  I++    +F  E       +F+I DE  ++ L+++     L   
Sbjct: 123 YIKPLWVGTFHSLCARILRYDIEKFQDEKGRRWRKNFSIIDESDAQSLVKDIVTRQLN-- 180

Query: 181 MLDNNEELKKAFYEILEISN 200
           + D   E +   Y I    N
Sbjct: 181 LDDKKFEPRNVRYAISNAKN 200


>gi|153956081|ref|YP_001396846.1| PcrA [Clostridium kluyveri DSM 555]
 gi|146348939|gb|EDK35475.1| PcrA [Clostridium kluyveri DSM 555]
          Length = 745

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL +    EQ  A         + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKNLLNKEQYEAVTTVEGPLLILAGAGSGKTRVLTYRIAHMIKDLNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                                       +    +
Sbjct: 61  NKAAGEMKDRIRKLVG--------------------------------------DEVDSM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +FAI D    K LI++  K  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYNRNFAIYDSYDQKVLIKQCMKEL 127


>gi|33864717|ref|NP_896276.1| UvrD/REP helicase [Synechococcus sp. WH 8102]
 gi|33632240|emb|CAE06696.1| UvrD/REP helicase [Synechococcus sp. WH 8102]
          Length = 797

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 17/173 (9%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P+ +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++        + L+              D  + R  +    E    L
Sbjct: 61  NKAAREMKERLEVLLA-------QKLAQSQYGQPWSTLPPVDQRQLRSRIYR--EVSKEL 111

Query: 132 KVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLA 178
            + T HA    +++    +F     ++    F+I DE  ++ L++E     L 
Sbjct: 112 WIGTFHALFARMLRYDIDKFKDAEGLSWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|324993970|gb|EGC25889.1| exonuclease RexA [Streptococcus sanguinis SK405]
          Length = 1224

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   ++D  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|269955531|ref|YP_003325320.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304212|gb|ACZ29762.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM
           15894]
          Length = 896

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++    ++           + A AGSGKT +L  R+  LL    A    +L +T T
Sbjct: 76  LLDGLN--PQQRAAVEHHGSPLLIVAGAGSGKTRVLTHRIAYLLATGRARAGEILAITFT 133

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++   +                                        +
Sbjct: 134 NKAAAEMRERVEHLVGPAA--------------------------------------SRM 155

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++      + S F+I D   S++L+    +  
Sbjct: 156 WVSTFHSACVRILRREYKVLGLRSSFSIYDAADSQRLVTLVTREL 200


>gi|325293426|ref|YP_004279290.1| DNA helicase II [Agrobacterium sp. H13-3]
 gi|325061279|gb|ADY64970.1| DNA helicase II [Agrobacterium sp. H13-3]
          Length = 824

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +S    EQ  A +    +  V A AG+GKT +L  R+  +L    A+PS +L +T T 
Sbjct: 51  DYLSGLNPEQREAVETLDGAVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTN 110

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 111 KAAREMKERIGVLVGGAVE-------------------------------------GMPW 133

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++      + S F I D +   +LI++     + +  LD+     K F
Sbjct: 134 LGTFHSIGVKLLRRHAELIGLKSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 189

Query: 193 YEILEISNDEDI 204
             +++   ++ +
Sbjct: 190 AGMIDGWKNKGL 201


>gi|324994711|gb|EGC26624.1| exonuclease RexA [Streptococcus sanguinis SK678]
          Length = 1224

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   ++D  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|265764162|ref|ZP_06092730.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16]
 gi|263256770|gb|EEZ28116.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16]
          Length = 786

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL    +P  +L LT T  
Sbjct: 3   DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                             +AR L            +
Sbjct: 63  AAREMKERIARQVGE--------------------------QRARFL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I D   SK LI    K  
Sbjct: 86  GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128


>gi|76799128|ref|ZP_00781314.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
 gi|76585514|gb|EAO62086.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
          Length = 770

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I                    +    ++    +  L   L       + T+ AF
Sbjct: 89  ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            + I+ Q+     I+  F I  D+ +   +  E      +  M   N     +F +++  
Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            S +        +++      K+  F  S    ++ ++
Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 219


>gi|225850544|ref|YP_002730778.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1]
 gi|225645384|gb|ACO03570.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1]
          Length = 696

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 41/196 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLT 69
            E I+ +++ ++E +L         V A AGSGKT ++  +++ L+     P   +L +T
Sbjct: 1   MEVIEGLNEKQAEAVLYF--GSPLLVLAGAGSGKTKVITHKIIFLIKELEIPLDRILAIT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA+EM  RV   +                                           
Sbjct: 59  FTNKAASEMKERVKNYLGLEEEPQ------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+FC  +++        +  F I DEE SKK I++  K    +  L   E +K
Sbjct: 83  --WISTFHSFCVKVLRSEAESIGYSRDFIIYDEEDSKKAIKDVVKELNLNSDLYKPERVK 140

Query: 190 KAFYEILEISNDEDIE 205
             F  I +  +D  +E
Sbjct: 141 HIFSNIKQSLDDTVLE 156


>gi|295099324|emb|CBK88413.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Eubacterium
           cylindroides T2-87]
          Length = 492

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 31/222 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAA 75
           +  +K++Q       ++  VSA+AGSGKT +LV+R+ +L L+       +L +T T+ AA
Sbjct: 1   MPFSKAQQQAIDLRNKNILVSASAGSGKTSVLVERLCKLVLVDKISIDRILAMTFTEDAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + + A +                              + + L       + T
Sbjct: 61  NEMKDRLKKRLQAETQTD--------------------------YIQSQLALLETASICT 94

Query: 136 IHAFCEAIMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           I  FC +I++ +  +  I+     ++A   Q+ K   +A      SI  ++  +LK  F 
Sbjct: 95  IDGFCLSIVKNYYYKIPISYKMSKSVASSAQANKAFLDAYNEACNSINTNDFVKLKLFFS 154

Query: 194 EILEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKI 233
            + +  +D   +I  LI+  +S   + + I    +     K 
Sbjct: 155 SLGKTEDDILSNIRDLINVAMSKPDSNEWIRSLMNKPCSEKT 196


>gi|187931065|ref|YP_001891049.1| DNA helicase II [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187711974|gb|ACD30271.1| DNA helicase II [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 740

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q       R+A + A AGSGKT +L  R+  L          +L +T T  AA
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV +++   +                                       G+ + T
Sbjct: 68  KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   E  +  +F I D+++  +L     K  + ++ LD+ +   K     
Sbjct: 90  FHGIAHRLLRKHTHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145

Query: 196 LEISNDEDIE 205
           +    D+ I 
Sbjct: 146 INKQKDKAIR 155


>gi|29346067|ref|NP_809570.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337961|gb|AAO75764.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 788

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + I +    Q  A       + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 4   NYIEELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                           M +AR+L            +
Sbjct: 64  AAREMKDRIARQVG--------------------------MERARYL-----------WM 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS F I D   SK LI    K  
Sbjct: 87  GTFHSVFSRILRAEAKYIGFTSQFTIYDSADSKSLIRSIIKEM 129


>gi|30249444|ref|NP_841514.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
 gi|30138807|emb|CAD85384.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
          Length = 744

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 44/193 (22%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQL A     +SA V A AGSGKT +L  R+  LL +    P  +L +T T  
Sbjct: 4   LLTDLNPEQLEAVTWSHQSALVLAGAGSGKTRVLTTRIAYLLQSGRTRPQNILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                            + V
Sbjct: 64  AAREMVARIGAMLPV--------------------------------------NTRAMWV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D      +I    K  L    LD      +   
Sbjct: 86  GTFHGLCHRVLRAHHEDAGLPQAFQILDMADQLAVI----KRVLKERSLDEKMLPPRQLQ 141

Query: 194 EILEISNDEDIET 206
             +  + +E +  
Sbjct: 142 WFINNAKEEGLRA 154


>gi|13476580|ref|NP_108150.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
 gi|14027342|dbj|BAB53611.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
          Length = 697

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 34/179 (18%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPT-----RSAWVSANAGSGKTHILVQRVLRLLL 57
           + ++F E +     +++    Q  A +           V A AGSGKT+ L  RV  L++
Sbjct: 6   HDSTFLESAVAPAYLARLNDAQRQAVEHGDGKIAGPLLVIAGAGSGKTNTLAHRVAHLIV 65

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
             A P  +L +T ++ AA+EM+ RV  I          +++  +T               
Sbjct: 66  KGADPRRILLMTFSRRAASEMAKRVERIAGEVLGRDAAVITDALT--------------- 110

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                            T H     +++ + LE  +   F I D E S  L+  A+   
Sbjct: 111 --------------WAGTFHGIGARLLRDYALEIGLDPAFTIHDREDSADLMNLARHEL 155


>gi|327463228|gb|EGF09549.1| exonuclease RexA [Streptococcus sanguinis SK1]
          Length = 1224

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   ++D  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEADSPEFKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|302342252|ref|YP_003806781.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301638865|gb|ADK84187.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 741

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 41/197 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++       R   V A AGSGKT  LV RV  ++     P  +L LT T+ AAAEM 
Sbjct: 13  NPAQRQAVELLGRPVLVIAGAGSGKTRTLVHRVAHVVELGVDPREILLLTFTRRAAAEM- 71

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                                             +++AR L        GG    T H+ 
Sbjct: 72  ----------------------------------LARARQLNPACAAVGGG----TFHSL 93

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  +++++   A +  +F I D   ++ L+             D      +  + ++  S
Sbjct: 94  CNRLLRRYAARAGLMPNFTIIDPADAEHLVRGCIDELGLKGGKDERFPKPRTVFGLISAS 153

Query: 200 NDEDIETLISDIISNRT 216
              ++E  ++++I  R 
Sbjct: 154 --RNLELSLAELIQTRE 168


>gi|222149095|ref|YP_002550052.1| DNA helicase II [Agrobacterium vitis S4]
 gi|221736080|gb|ACM37043.1| DNA helicase II [Agrobacterium vitis S4]
          Length = 858

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 43/202 (21%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           + ++ +   D ++    EQ  A +       V A AG+GKT +L  R+  +L    A PS
Sbjct: 68  AARDQNRNPDYLAGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAFPS 127

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  RV  ++                                     
Sbjct: 128 QILSVTFTNKAAREMKERVGVLVGGAVE-------------------------------- 155

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                G   + T H+    ++++      +TS F I D +   +LI++     + +  LD
Sbjct: 156 -----GMPWLGTFHSIGVKLLRRHAELVGLTSDFTILDTDDVVRLIKQ----IIQAEGLD 206

Query: 184 NNEELKKAFYEILEISNDEDIE 205
           +     K F  +++   ++ ++
Sbjct: 207 DKRWPAKMFAGMIDGWKNKGLD 228


>gi|327474835|gb|EGF20240.1| exonuclease RexA [Streptococcus sanguinis SK408]
          Length = 1224

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   ++D  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|229816023|ref|ZP_04446344.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM
           13280]
 gi|229808337|gb|EEP44118.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM
           13280]
          Length = 950

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D+ +   +++           V A AGSGKT +L  R+ R++      P  +L +T T
Sbjct: 79  LVDIDTLNPAQREAVLTTEGPLLVLAGAGSGKTRVLTFRIARMIGDLGIRPWQILAITFT 138

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  ++                                           G+
Sbjct: 139 NKAAAEMRERLSAMLPDGGMR-------------------------------------GM 161

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  ++++       T  F I D++ S++++ E     
Sbjct: 162 WVCTFHAMCVRMLREDADLLGYTGQFTIYDDDDSRRMVREIMAHL 206


>gi|306844312|ref|ZP_07476904.1| DNA helicase II [Brucella sp. BO1]
 gi|306275384|gb|EFM57125.1| DNA helicase II [Brucella sp. BO1]
          Length = 858

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEELDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|303228942|ref|ZP_07315752.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516356|gb|EFL58288.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 729

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D ++  + +Q           + A AGSGKT +L  R+  LL    +P  +L +T T 
Sbjct: 4   LLDGLN--REQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 62  KAAKEMKSRVEGLVGDVA--------------------------------------NRIW 83

Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+FC   ++ +        S+F I D   S+ +I+ A K+ 
Sbjct: 84  LSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQVVIKAALKAL 128


>gi|319761999|ref|YP_004125936.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317116560|gb|ADU99048.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 796

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 74/226 (32%), Gaps = 50/226 (22%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+     EQL A   P   A + A AGSGKT +L  R+  LL    A P  +L +T T  
Sbjct: 14  LLQGLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLSTGHATPGGILAVTFTNK 73

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 74  AAKEMLTRLSAMLPI--------------------------------------NVRGMWI 95

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A +   F I D +        A K       +D      K   
Sbjct: 96  GTFHGLCNRMLRAHHKLAGLPQSFQILDTQDQLS----AVKRLCKQFNVDEERFPPKQLA 151

Query: 194 EILEISNDEDIETLISDIISN----RTALKLIFFFFSYLWRRKIIE 235
             +    +E +     D+ ++    R  ++L   +     R  +++
Sbjct: 152 YFIAGCKEEGLRP--RDVEAHDSDTRKKVELYQLYEEQCQREGVVD 195


>gi|329890022|ref|ZP_08268365.1| DNA helicase II [Brevundimonas diminuta ATCC 11568]
 gi|328845323|gb|EGF94887.1| DNA helicase II [Brevundimonas diminuta ATCC 11568]
          Length = 778

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +S    EQ  A + T     V A AG+GKT +L  R+  +L    A P  LL +T T 
Sbjct: 24  DYLSGLNPEQREAVETTEGPVLVLAGAGTGKTRVLTTRLAHILATGRAKPWELLVVTFTN 83

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                      P+   +                  
Sbjct: 84  KAAREMRERIGHLIG---------------------PSSEGLR----------------W 106

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    I+++      + S F I D +  ++L+++     L +  +D      K+ 
Sbjct: 107 LGTFHSVAAQILRRHAELVGLKSSFTILDTDDQERLLKQ----LLEAANIDTKRFTPKSL 162

Query: 193 YEILEISNDEDI 204
             +++   +   
Sbjct: 163 AHMIDHWKNRGW 174


>gi|329576878|gb|EGG58363.1| hypothetical protein HMPREF9520_01337 [Enterococcus faecalis
           TX1467]
          Length = 191

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|303231497|ref|ZP_07318227.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513840|gb|EFL55852.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 729

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D ++  + +Q           + A AGSGKT +L  R+  LL    +P  +L +T T 
Sbjct: 4   LLDGLN--REQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 62  KAAKEMKSRVEGLVGDVA--------------------------------------NRIW 83

Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+FC   ++ +        S+F I D   S+ +I+ A K+ 
Sbjct: 84  LSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQVVIKAALKAL 128


>gi|148238576|ref|YP_001223963.1| UvrD/REP helicase [Synechococcus sp. WH 7803]
 gi|147847115|emb|CAK22666.1| UvrD/REP helicase [Synechococcus sp. WH 7803]
          Length = 795

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 19/174 (10%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P+ +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130
             AA EM  R+  ++      S            G+  +     + R L   I  E    
Sbjct: 61  NKAAREMKERLELLLAQRLAQSQY----------GQPWSTLPPVEQRQLRSRIYREVTKE 110

Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
           L + T HA    +++    +F     +  T  F+I DE  ++ L++E     L 
Sbjct: 111 LWIGTFHALFARMLRYDIDKFKDSEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|330826182|ref|YP_004389485.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329311554|gb|AEB85969.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 796

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 73/224 (32%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+     EQL A   P   A + A AGSGKT +L  R+  LL    A P  +L +T T  
Sbjct: 14  LLQGLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLSTGHATPGGILAVTFTNK 73

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 74  AAKEMLTRLSAMLPI--------------------------------------NVRGMWI 95

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A +   F I D +        A K       +D      K   
Sbjct: 96  GTFHGLCNRMLRAHHKLAGLPQSFQILDTQDQLS----AVKRLCKQFNVDEERFPPKQLA 151

Query: 194 EILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
             +    +E +     ++  +  R  ++L   +     R  +++
Sbjct: 152 YFIAGCKEEGLRPRDVEVHDSDTRKKVELYQLYEEQCQREGVVD 195


>gi|312876019|ref|ZP_07736008.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797217|gb|EFR13557.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 714

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ++ + +   +Q  A         V A AGSGKT ++  R+  +L    A+P  +L +T T
Sbjct: 1   MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +++                                      ++   +
Sbjct: 61  NKAADEMKERIKRLVST-------------------------------------QSFSEM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I++        +++F I D +  ++L++E     
Sbjct: 84  WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRQQLLKECFDKL 128


>gi|126726603|ref|ZP_01742443.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150]
 gi|126703932|gb|EBA03025.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150]
          Length = 797

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           SE ++ ++  + E +   +      + A AG+GKT  L  R+  LL   A  P+ +L +T
Sbjct: 36  SEYLEGLNPAQREAVEQME--GPVLMLAGAGTGKTKALTTRIAHLLATGAARPNEILAVT 93

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++                                          G
Sbjct: 94  FTNKAAREMKDRVGGLMGEAVE-------------------------------------G 116

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T HA C  ++++      + S+F I D +   +L+++     + +  +D      
Sbjct: 117 MPWLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIRAENIDEKRWPA 172

Query: 190 KAFYEILEISNDEDI 204
           +    +++   +   
Sbjct: 173 RGLANLIDGWKNRAW 187


>gi|78183791|ref|YP_376225.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9902]
 gi|78168085|gb|ABB25182.1| ATP-dependent DNA helicase, Rep family [Synechococcus sp. CC9902]
          Length = 798

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 27/178 (15%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P  +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHQGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPGQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPG 129
             AA EM  R+           + +L+  + + Q  +P  +     +  L + +  E   
Sbjct: 61  NKAAREMKERL-----------ELLLAQRLAQSQFGQPWSTLPPVQQRQLRSRIYREITK 109

Query: 130 GLKVQTIHAFCEAIMQQFPLEAN--ITSH-------FAIADEEQSKKLIEEAKKSTLA 178
            L + T HA    +++    + +             F+I DE  ++ L++E     L 
Sbjct: 110 ELWIGTFHALFARMLR---FDIDKFRDPDGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|262381917|ref|ZP_06075055.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297094|gb|EEY85024.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 780

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 5   EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  I                                        +T   L
Sbjct: 63  NKAAREMKERIAAITGE-------------------------------------QTARRL 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D   SK L++   K  
Sbjct: 86  WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 130


>gi|188582350|ref|YP_001925795.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179345848|gb|ACB81260.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 1047

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 7/170 (4%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S    +++   + +   S   RS  V A AGSGKT ++  R+  +L     P ++  +T
Sbjct: 1   MSSMSKVLNDDGARRDAISLHDRSILVEAGAGSGKTAVMAGRIAAMLAEGVAPRSIAAVT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA+E+  RV E +       D  +    T+++   P+    +  R  L        
Sbjct: 61  FTELAASELLSRVREFVA------DLSVGTIATELRVALPDGLTQTH-RDNLAAASAAID 113

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            +   TIH FC+ +++ +P EA+I    ++ D   +     +     L  
Sbjct: 114 EITCSTIHGFCQRLIKPYPAEADIDPGASVMDRNHADFTFLDIVDGWLRE 163


>gi|114766608|ref|ZP_01445560.1| DNA helicase II, putative [Pelagibaca bermudensis HTCC2601]
 gi|114541148|gb|EAU44201.1| DNA helicase II, putative [Roseovarius sp. HTCC2601]
          Length = 816

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + E +   D      + A AG+GKT  L  R++ LL++  A P+ +L +T T
Sbjct: 27  YLDDLNPAQREAVERLD--GPVLMLAGAGTGKTKALTSRIVHLLVSGKARPNEILSVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                       +  G  
Sbjct: 85  NKAAREMKTRVGRLLGQ-------------------------------------QIEGMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  ++++    A + S+F I D +   +L+++     LA+  +D      + 
Sbjct: 108 WLGTFHAICVKLLRRHAELAGLKSNFTILDTDDQIRLLKQ----LLAANNIDEKRWPARQ 163

Query: 192 FYEILEISNDEDI 204
              +++   +   
Sbjct: 164 LSGLIDHWKNRAW 176


>gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA]
 gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens
           PCA]
          Length = 739

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 49/219 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            + +D ++    ++           V A AGSGKT ++V R+  L+         +L +T
Sbjct: 1   MKLLDNLN--PPQRAAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++     L                                     
Sbjct: 59  FTNKAAGEMRERVEKLVGGEVPL------------------------------------- 81

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+ C  I+++        S FAI D++ S KL++E     +A + LD      
Sbjct: 82  ---IATFHSTCARILRREIHHLGYDSSFAIYDDKDSGKLLKE----VMAGLGLDEKRFPA 134

Query: 190 KAFYEILEISNDEDI--ETLISDIISNRTALKLIFFFFS 226
            +    ++   +  +  E L +D  +     ++   +  
Sbjct: 135 TSLASAIDDCKNRGLAPEDLPADTFTGEVVGRVYAAYQE 173


>gi|23098214|ref|NP_691680.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776439|dbj|BAC12715.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 741

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 41/218 (18%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K +Q           + A AGSGKT +L  R+  L+   +  P  +L +T T  AA EM
Sbjct: 13  NKQQQEAVRHTEGPLLIMAGAGSGKTRVLTHRIAYLMGEKDVSPRNILAITFTNKAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 73  KERVSKLVGPQGEY--------------------------------------MWVSTFHS 94

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYEILE 197
            C  I+++       +++F+I D      +I++  K+  +     D    L +      E
Sbjct: 95  MCVRILRRDIDRIGYSTNFSILDSSDQLSVIKQVLKNLNIDPKKFDPRAMLGQISTAKNE 154

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +  +E+      D  S R   ++   +   L + + ++
Sbjct: 155 LITEEEYSKNAGDFFS-RQVAQVYEGYQKMLRKNQSLD 191


>gi|290889814|ref|ZP_06552901.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429]
 gi|290480424|gb|EFD89061.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429]
          Length = 1186

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 23/193 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
                ++A  P  +  V+A+AGSGKT +L++ V + LL+       L  T T AAA EM 
Sbjct: 5   KNQRAVIAHIPDHNLLVAASAGSGKTTVLIEHVYQQLLSGKSIDRFLISTFTDAAALEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +R+ + I A     +  L                    +  L   L       + T+ +F
Sbjct: 65  NRLEKRIRAGITEEEGQL--------------------KRHLQEQLLLLNSAAIGTLDSF 104

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
              I++++     +   + +  D+ +   L+++    T   +   ++E+  +        
Sbjct: 105 SLRIIERYYSVIGLDPRYRMLADQTEKNLLVKDVLDDTFDEMY--HDEKFLRLLNNFSSA 162

Query: 199 SNDEDIETLISDI 211
           S+D+D++ L+  +
Sbjct: 163 SHDQDLKNLVIKL 175


>gi|90415401|ref|ZP_01223335.1| DNA helicase II [marine gamma proteobacterium HTCC2207]
 gi|90332724|gb|EAS47894.1| DNA helicase II [marine gamma proteobacterium HTCC2207]
          Length = 723

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 45/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D ++  + E    +   +   V A AGSGKT +LV R+   L + N  P ++L +T T
Sbjct: 6   ILDKLNAAQEE--AVTSDKQHLLVLAGAGSGKTRVLVHRIAWKLQVDNLSPYSILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ E++                                        +  G+
Sbjct: 64  NKAAREMRERIDELMGM--------------------------------------SLRGM 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H     +++    +  +  +F I D +   +L     K  + S+ LD      K 
Sbjct: 86  WVGTFHGLAHRLLKAHWKDVKLPENFQILDSDDQLRL----VKRVMRSMDLDEQRWPPKQ 141

Query: 192 FYEILEISNDEDIET 206
               +    DE +  
Sbjct: 142 AQWWINGQKDEGLRA 156


>gi|15671986|ref|NP_266160.1| ATP-dependent exonuclease subunit a [Lactococcus lactis subsp.
           lactis Il1403]
 gi|81538647|sp|Q9CJI9|ADDA_LACLA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|12722839|gb|AAK04102.1|AE006239_4 subunit A of ATP-dependent exonuclease [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 1203

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 35/230 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +        ++  VSA+AGSGKT ++ QR++  +        L   T TK AA+
Sbjct: 4   VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   +      S +                         L   L+      + T+
Sbjct: 64  ELRMRLERDLKKARQESSD-------------------ENQACRLTLALQNLSNADIGTM 104

Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNN------EELK 189
            +F + + +      NI  +F I  D+ +S  + +E  +  + S +  ++      E+ +
Sbjct: 105 DSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSGDDGLNISKEKFE 164

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           +      +  N    + ++  I           F  +     K +E    
Sbjct: 165 ELIKNFSKDRNIAGFQKVVYTI---------YRFASATENPIKWLENQFL 205


>gi|88797135|ref|ZP_01112725.1| DNA helicase II [Reinekea sp. MED297]
 gi|88780004|gb|EAR11189.1| DNA helicase II [Reinekea sp. MED297]
          Length = 720

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 70/194 (36%), Gaps = 43/194 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
             T+ L +    +    +  + +  V A AGSGKT +L  R+  L+ A  A P ++L +T
Sbjct: 1   MHTLQLDTLNPEQHAAVTSDSPNLLVLAGAGSGKTRVLTHRIGWLIAAGLASPYSVLAVT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++ A S                                       
Sbjct: 61  FTNKAAREMKSRVEALLEAPSQ-------------------------------------- 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           GL + T H     +++    +A +  HF + D +   +L     K  +  + ++++    
Sbjct: 83  GLWIGTFHGLAHRLLKAHWQQAKLPQHFQVMDSDDQLRL----VKRIINEMNIEDDRIQP 138

Query: 190 KAFYEILEISNDED 203
           K     +    DE 
Sbjct: 139 KQVQWFINGQKDEG 152


>gi|322373657|ref|ZP_08048193.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150]
 gi|321278699|gb|EFX55768.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150]
          Length = 1217

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L ++        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +T                   ++  + +  + R  L   +   G   + T+ AF
Sbjct: 89  ERLEKRLT-------------------EQLGQVETDEERAFLSDQIAKIGTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ Q+     ++  F I  D  +   +  E         M   + +L +        
Sbjct: 130 TQKLVNQYGYLLGVSPIFRIMTDPAEQTLMKNEVYADLFNDFMQGKDAQLFQKLVR--NF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           + +        D++ +     +  F  +     K + ++L 
Sbjct: 188 AGNGKTSKAFRDLVYD-----VYNFSQATAGPEKWLRQNLL 223


>gi|257790997|ref|YP_003181603.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257474894|gb|ACV55214.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 1165

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 39/188 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68
           ++L + T  ++           VSA AGSGKT  L QR+   LL  + P       +L +
Sbjct: 1   MNLSTCTPGQRQSIEHVRGPLLVSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AAAE+  RV   +                             +A  L    L   
Sbjct: 61  TFTEKAAAEIKARVKRTL-----------------------------RAEGLAEEALRV- 90

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
            G  + TIH  C  I++   L+  +   F I  + +      EA    +   + D+N+ +
Sbjct: 91  DGAWISTIHGMCARILRAHALDLGLDPAFGIMGDAE----RAEAVADAIDGALGDDNDII 146

Query: 189 KKAFYEIL 196
            +  Y  L
Sbjct: 147 ARGSYAAL 154


>gi|298507445|gb|ADI86168.1| ATP-dependent DNA helicase UvrD/REP [Geobacter sulfurreducens
           KN400]
          Length = 739

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 49/219 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            + +D ++    ++           V A AGSGKT ++V R+  L+         +L +T
Sbjct: 1   MKLLDNLN--PPQRAAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++     L                                     
Sbjct: 59  FTNKAAGEMRERVEKLVGGEVPL------------------------------------- 81

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+ C  I+++        S FAI D++ S KL++E     +A + LD      
Sbjct: 82  ---IATFHSTCARILRREIHHLGYDSSFAIYDDKDSGKLLKE----VMAGLGLDEKRFPA 134

Query: 190 KAFYEILEISNDEDI--ETLISDIISNRTALKLIFFFFS 226
            +    ++   +  +  E L +D  +     ++   +  
Sbjct: 135 TSLASAIDDCKNRGLAPEDLPADTFTGEVVGRVYAAYQE 173


>gi|15965897|ref|NP_386250.1| DNA helicase II protein [Sinorhizobium meliloti 1021]
 gi|307308207|ref|ZP_07587916.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
 gi|307319674|ref|ZP_07599099.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|15075166|emb|CAC46723.1| Probable DNA helicase II [Sinorhizobium meliloti 1021]
 gi|306894605|gb|EFN25366.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|306901205|gb|EFN31811.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
          Length = 857

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 77/202 (38%), Gaps = 43/202 (21%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           + ++ ++  D +S    EQ  A +       V A AG+GKT +L  R+  +L    A+PS
Sbjct: 33  AARDKAQRPDYVSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPS 92

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  R+  ++                                     
Sbjct: 93  QILAVTFTNKAAREMKERIGVLVGHAVE-------------------------------- 120

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                G   + T H+    ++++      + S F I D +   +LI++     + +  LD
Sbjct: 121 -----GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLD 171

Query: 184 NNEELKKAFYEILEISNDEDIE 205
           +     K F  +++   ++ ++
Sbjct: 172 DKRWPAKQFAGMIDTWKNKGLD 193


>gi|327461179|gb|EGF07512.1| exonuclease RexA [Streptococcus sanguinis SK1057]
          Length = 1224

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  GK   +++  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGKALKEAESPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSRLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|332109888|gb|EGJ10516.1| ATP-dependent DNA helicase UvrD [Rubrivivax benzoatilyticus JA2]
          Length = 784

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 73/224 (32%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+     EQL A   P   A + A AGSGKT +L  R+  LL  N   P  +L +T T  
Sbjct: 8   LLRNLNPEQLAAVTLPAVPALILAGAGSGKTRVLTTRIAWLLATNQVSPGGVLAVTFTNK 67

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 68  AAKEMLTRLGTMLPFAVR--------------------------------------GMWI 89

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++     A +   F I D          A K  + ++ LD    + K   
Sbjct: 90  GTFHGLCNRLLRAHWKAAGLPQSFQILDSGDQLS----AVKRVVKAMNLDEERFVPKQVA 145

Query: 194 EILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
             +    +E       +      R  +++   +     R  +++
Sbjct: 146 WFIAAQKEEGRRPAAVEAFDEHTRKLVQVYEAYEEQCRREGVVD 189


>gi|256113967|ref|ZP_05454750.1| DNA helicase II [Brucella melitensis bv. 3 str. Ether]
 gi|265995308|ref|ZP_06107865.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether]
 gi|262766421|gb|EEZ12210.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether]
          Length = 858

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPKQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|225852895|ref|YP_002733128.1| ATP-dependent DNA helicase PcrA [Brucella melitensis ATCC 23457]
 gi|256045044|ref|ZP_05447945.1| DNA helicase II [Brucella melitensis bv. 1 str. Rev.1]
 gi|256263623|ref|ZP_05466155.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565357|ref|ZP_05835841.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|265991470|ref|ZP_06104027.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1]
 gi|225641260|gb|ACO01174.1| ATP-dependent DNA helicase pcrA [Brucella melitensis ATCC 23457]
 gi|260151425|gb|EEW86519.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|263002254|gb|EEZ14829.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093675|gb|EEZ17680.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409437|gb|ADZ66502.1| ATP-dependent DNA helicase PcrA [Brucella melitensis M28]
 gi|326539143|gb|ADZ87358.1| ATP-dependent DNA helicase pcrA [Brucella melitensis M5-90]
          Length = 858

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPKQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|315924258|ref|ZP_07920482.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622419|gb|EFV02376.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 736

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D +++ + E  LA++      + A AGSGKT  ++ R+  +L    A PS +L +T T
Sbjct: 3   LLDGLNEQQREAALATE--GPLLILAGAGSGKTRTIIHRIAYILEQGLAWPSQILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+                                          +     +
Sbjct: 61  NKAAGEMRDRIA--------------------------------------AMDIPETNRI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T HA C  IM+          +F I D +  K+L ++  K  
Sbjct: 83  WMYTFHAMCARIMRMHAKLLGYGDNFVIYDTDDQKRLYKQIAKEL 127


>gi|284043266|ref|YP_003393606.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283947487|gb|ADB50231.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 1184

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 35/191 (18%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80
           SEQ  A +      ++ANAGSGKT ++ +R +R +L      + +L +T T+ AA+E+  
Sbjct: 9   SEQRAAIEHAGGLLLTANAGSGKTSVMAERFVRAVLHEGVEVTRILAITFTEKAASELKE 68

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV     A                           +AR           G  V TIH FC
Sbjct: 69  RVRRRFEALGEP----------------------ERAR--------ATEGAWVSTIHGFC 98

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++  PL A I   F++ DE  +++L          + +    EE   A  E++    
Sbjct: 99  ARLLRTHPLAAGIDPRFSVLDEHGARQL----AVGAFDAALDALAEEHGTAALELIAAYR 154

Query: 201 DEDIETLISDI 211
             D+ + I D+
Sbjct: 155 PADLRSAILDV 165


>gi|209876554|ref|XP_002139719.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris
           RN66]
 gi|209555325|gb|EEA05370.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris
           RN66]
          Length = 985

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 20/190 (10%)

Query: 23  EQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           EQ  A D  P  S  + A  GSGKT  +  R+++ L+    P  +L LT TK AA E+  
Sbjct: 54  EQKKAVDVPPESSLLIVAGPGSGKTATITARIIKFLIEGYTP--ILALTFTKKAANELKS 111

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+        +++       I+    K+ + + +SK  + + ++  T   L + TIH+FC
Sbjct: 112 RI--------NVAYSSSLKSISIESTKRNSVNHISKNSYNISSLSLTDKDLFIGTIHSFC 163

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++Q+     + S   +AD+E   K+++      +           K A    L  S 
Sbjct: 164 WKLLKQYGTAIGLPSKIEVADKEMMLKILKLCLTEVMNI--------SKAAVASQLSASK 215

Query: 201 DEDIETLISD 210
            E ++ L+SD
Sbjct: 216 LESLDDLLSD 225


>gi|91774719|ref|YP_544475.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT]
 gi|91708706|gb|ABE48634.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT]
          Length = 731

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 46/224 (20%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D +++ + E    + P +SA + A AGSGKT +L  R+  L+      P  +L +T T
Sbjct: 11  LLDGLNEKQLE--AVTLPHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPHGILSVTFT 68

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                           G+
Sbjct: 69  NKAAKEMLTRLGAMLPI--------------------------------------NIRGM 90

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              T H  C  +++    EA +   F I D          A K  + ++ +D+ +   K 
Sbjct: 91  WAGTFHGLCNRLLRAHHREAELPPTFQILDTADQLS----AIKRVMKAMNIDDEKFPPKQ 146

Query: 192 FYEILEISNDEDIETLISDII-SNRTALKLIFFFFSYLWRRKII 234
               +    +E +     D   S+   ++ IF  +    +R+ +
Sbjct: 147 VLGYINSCKEEGLRAYAVDAYDSHSQRMREIFEEYDKQCQREGV 190


>gi|50955506|ref|YP_062794.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951988|gb|AAT89689.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 833

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 41/175 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
                  D ++    +++ A    ++  + A AGSGKT +L +R+  L+ +  A PS +L
Sbjct: 40  NASQRLFDGLN--PQQRIAAEYRGQALLIVAGAGSGKTSVLTRRIAGLIESREAWPSEIL 97

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  RV +++   +                                    
Sbjct: 98  AITFTNKAANEMRERVEQLLGGRAQ----------------------------------- 122

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
              G+ + T H+ C  I+++       T  F I D   S+ L++   K   A  +
Sbjct: 123 ---GMWISTFHSACVRILRREAETIGKTQSFTIYDSGDSRALLKRIVKELDADTL 174


>gi|116490406|ref|YP_809950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni
           PSU-1]
 gi|122277405|sp|Q04GY7|ADDA_OENOB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116091131|gb|ABJ56285.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni
           PSU-1]
          Length = 1186

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 23/193 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
                ++A  P  +  V+A+AGSGKT +L++ V + LL+       L  T T AAA EM 
Sbjct: 5   KNQRAVIAHIPDHNLLVAASAGSGKTTVLIEHVYQQLLSGKSIDRFLISTFTDAAALEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +R+ + I A     +  L                    +  L   L       + T+ +F
Sbjct: 65  NRLEKRIRAGITEEEGQL--------------------KRHLQEQLLLLNSAAIGTLDSF 104

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
              I++++     +   + +  D+ +   L+++    T   +   ++E+  +        
Sbjct: 105 SLRIIERYYSVIGLDPRYRMLADQTEKNLLVKDVLDDTFDEMY--HDEKFLRLLNNFSSA 162

Query: 199 SNDEDIETLISDI 211
           S+D+D++ L+  +
Sbjct: 163 SHDQDLKNLVIKL 175


>gi|326390898|ref|ZP_08212449.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993046|gb|EGD51487.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW
           200]
          Length = 711

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 40/160 (25%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           +    ++           + A AGSGKT +L  R+  L+      PS +L +T T  AA 
Sbjct: 7   NLNDKQREAVMTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAE 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +++                                          G L V T 
Sbjct: 67  EMKTRVEDLLGYI---------------------------------------GDLWVSTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+ C  I+++   +     +F I D    K LI+E  K  
Sbjct: 88  HSACVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127


>gi|229823253|ref|ZP_04449322.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271]
 gi|229787419|gb|EEP23533.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271]
          Length = 798

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           ++A AGSGKT +L  R+  L+     +P  +L +T T  AAAEM
Sbjct: 17  NSKQREAVLTTEGPVLIAAGAGSGKTRVLTHRIAYLIQERQVNPWNILAITFTNKAAAEM 76

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                       E    + V T HA
Sbjct: 77  RERVQRLVG--------------------------------------EEASSIWVATFHA 98

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I+++         +F I D+ + + L+++     L  + LD+++   K    +++ 
Sbjct: 99  MCARILRREIETLGYAKNFTIIDQGEQQTLMKQ----VLRDLNLDSDQYNYKDLLWVIDA 154

Query: 199 SNDED 203
           + ++ 
Sbjct: 155 AKNQG 159


>gi|171779650|ref|ZP_02920606.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281752|gb|EDT47186.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1208

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 41/228 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R++  +L       L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGITVDRLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+                   +   K+  +  +  L   L       + T+ AF
Sbjct: 89  ERLEKKIS-------------------QALQKATDNDLKTYLNEQLLALQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            + ++ Q+     I+  F I  ++  + L++              N+     F + +   
Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTDKSEQDLVK--------------NDVFADLFADYMTGQ 175

Query: 200 NDEDIETLISDIISNRTA--------LKLIFFFFSYLWRRKIIEKSLW 239
           N +    L+ +   NR           K+  F  +    +K + +   
Sbjct: 176 NQDSFRKLVRNFSGNRKDSSAFRGIVYKIYDFSQATDNPKKWLAEVFL 223


>gi|299535245|ref|ZP_07048569.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1]
 gi|298729366|gb|EFI69917.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1]
          Length = 750

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 42/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      ++           + A AGSGKT +L  R+  L++    +PS +L +T T  A
Sbjct: 9   LAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVIEKEVYPSKILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  I+                                        T   + V 
Sbjct: 69  AREMRDRIDGILGNG-------------------------------------TGDSMWVS 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++   +  I+ +F+I D      +I    K+ +    +D      +A   
Sbjct: 92  TFHSMCVRILRRNIDQLGISRNFSILDSTDQLSVI----KNVMKEENIDPKRFEPRAILN 147

Query: 195 ILEISNDE 202
            +  + +E
Sbjct: 148 AISAAKNE 155


>gi|150020318|ref|YP_001305672.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
 gi|149792839|gb|ABR30287.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
          Length = 1003

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 35/219 (15%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH------PSTLLCLTHTKAAAAEMSH 80
             D  ++ ++SA+AG+GKT+ +    +++L              ++  T TK AAAEM  
Sbjct: 7   IKDINKNYFISASAGTGKTYTITHFYVKILSEYEKQNYPEIIDRIVVTTFTKKAAAEMKE 66

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                    +  N     K ++ L   +       + TI +FC
Sbjct: 67  RIFKLV--------------------EPHNSPYWHKVKNYLPRAI-------ISTIDSFC 99

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           + ++++  + ANI  +F I  + +  KLI+ A   TL  +     +  K      +    
Sbjct: 100 QRLLREENINANIDPNFTIISDLKMSKLIDRAVFLTL-KLTFQLYDFGKTNVRLNISKHR 158

Query: 201 DEDIETLISDIISNRTALKLIFFFFSYLWR-RKIIEKSL 238
            E+IE L+  +   +  +K +F  +  +    KI++++L
Sbjct: 159 KENIEKLLEKLKDVKEGIKELFNIYKSINEIEKILQETL 197


>gi|221234533|ref|YP_002516969.1| DNA helicase II [Caulobacter crescentus NA1000]
 gi|220963705|gb|ACL95061.1| DNA helicase II [Caulobacter crescentus NA1000]
          Length = 811

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++    ++           V A AG+GKT +L  R+  +L    A P  +L +T T
Sbjct: 45  YLDGLN--PEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFT 102

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  II                      P    +                 
Sbjct: 103 NKAAREMRERITHIIG---------------------PEAEGLR---------------- 125

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+    I+++      + S++ I D + +++L+++     + +  +D      + 
Sbjct: 126 WLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDNERLLKQ----LIEAENIDAKRWTPRI 181

Query: 192 FYEILEISNDEDI 204
             +I++   +   
Sbjct: 182 LSQIIDGWKNRGW 194


>gi|110634338|ref|YP_674546.1| ATP-dependent DNA helicase Rep [Mesorhizobium sp. BNC1]
 gi|110285322|gb|ABG63381.1| ATP-dependent DNA helicase, Rep family [Chelativorans sp. BNC1]
          Length = 876

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++L          V A AG+GKT +L  R+  +L    A+PS +L +T T  AA EM
Sbjct: 46  NPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREM 105

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++                                          G   + T H+
Sbjct: 106 KTRIGVLVGQAIE-------------------------------------GMPWLGTFHS 128

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               ++++    A +TS F I D +   +L+++     + +  LD+     +    +++ 
Sbjct: 129 IGVKLLRRHAELAGLTSSFTILDTDDQVRLLKQ----LIQAEALDDKRWPARQLAMMIDG 184

Query: 199 SNDEDI 204
             ++ +
Sbjct: 185 WKNKGL 190


>gi|258510954|ref|YP_003184388.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477680|gb|ACV57999.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 705

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 49/211 (23%)

Query: 12  ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           +  D++     EQ  A +  +    V A AGSGKT +L +R+  L+  A      +L +T
Sbjct: 3   DVTDILRGLNPEQRDAVTTTSGPLLVVAGAGSGKTSVLTRRIAYLIAHAGVAVHEILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ ++I   +                                       
Sbjct: 63  FTNKAAREMKTRIRDLIGPRA--------------------------------------D 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            L + T H+ C  I+++         +F I D E  + L+++     L  +  D      
Sbjct: 85  DLWMGTFHSICVRILRREADRLGYQPNFTILDSEDQEALVQQC----LLDLGYDLKTHDA 140

Query: 190 KAFYEILEISNDEDIETLI-----SDIISNR 215
           ++    +    +E    ++     SD+I++R
Sbjct: 141 RSIKHRISQWKNEGATRVVNESNPSDLIADR 171


>gi|313900250|ref|ZP_07833746.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2]
 gi|312954959|gb|EFR36631.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2]
          Length = 1069

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 31/206 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +      +         +  VSA+AGSGKT +L+ R++ L++  +    ++L +T T+AA
Sbjct: 1   MPEWNPMQLKAIQTKEHNILVSASAGSGKTTVLIARLMDLVMKDHVSIDSILAMTFTEAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +                    K    +   + +  +   L       + 
Sbjct: 61  ANEMKKRLATELQ-------------------KALTAARTEEEKSYITRQLTGIQTAHIS 101

Query: 135 TIHAFCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           TIH+FC +I+Q++     +      +I D        +++    L        +    +F
Sbjct: 102 TIHSFCLSIIQEYYYILGLDPQRIKSIMDNGTMVLFQQQS----LEEAFAKQYQLQDASF 157

Query: 193 YEI-----LEISNDEDIETLISDIIS 213
            ++         NDE + T+I ++  
Sbjct: 158 LQLCQMFSARAENDEALRTMIMNLAG 183


>gi|218261884|ref|ZP_03476569.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223732|gb|EEC96382.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii
           DSM 18315]
          Length = 261

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E +  +++++ E ++ +D    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 24  EYLKQLNESQREAVVYTD--GPSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFT 81

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+       + L+DE                               T   L
Sbjct: 82  NKAAREMKERI-------ASLTDE------------------------------RTARRL 104

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D   SK L+    K  
Sbjct: 105 WMGTFHSIFSRILRSEAERIGYPSNFTIYDATDSKSLLRSIMKEM 149


>gi|17986879|ref|NP_539513.1| DNA helicase II [Brucella melitensis bv. 1 str. 16M]
 gi|17982519|gb|AAL51777.1| DNA helicase ii [Brucella melitensis bv. 1 str. 16M]
          Length = 827

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 6   QQHGEPDYLKGLNPKQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 65

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 66  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 90

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 91  --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 144

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 145 WPARTFANMIDGWKNKGF 162


>gi|255534061|ref|YP_003094433.1| exodeoxyribonuclease V [Pedobacter heparinus DSM 2366]
 gi|255347045|gb|ACU06371.1| Exodeoxyribonuclease V [Pedobacter heparinus DSM 2366]
          Length = 1073

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 19/194 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AGSGKT  L    L LLL+  +    +L +T T  A  EM  R+L+++  ++   
Sbjct: 8   ILQASAGSGKTFSLTAHYLTLLLSGENKYREILAVTFTNKATEEMKSRILDVLQGFATGD 67

Query: 94  DEILSAEITKIQGKKPNKSDM--SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           ++  S     +       +D    KA  +   IL       V TI  F + +++ F  E 
Sbjct: 68  EKFNSYRNIVLNANPTLNADQLKEKADQIYRKILHDYSRFSVSTIDGFVQKVIRGFAFEL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASI--MLDNNEELKKAFYEI-LEISNDED----- 203
            + + +++          ++ K   +A +   LD+N +L +   ++ +E  ND       
Sbjct: 128 GLDAGYSLEMN------YDKVKDDLVAKLDEALDHNRQLLQWIIDLAIERINDNKSWNYK 181

Query: 204 --IETLISDIISNR 215
             +  LI +I   R
Sbjct: 182 TELYNLIGEIFKER 195


>gi|284992801|ref|YP_003411355.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM
           43160]
 gi|284066046|gb|ADB76984.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM
           43160]
          Length = 765

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 59/182 (32%), Gaps = 39/182 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           ++           + A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R
Sbjct: 37  QRQAVVHEGSPLLIVAGAGSGKTRVLTHRIAYLLGARGVQPGEVLAITFTNKAAGEMKER 96

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  ++                             +AR            + V T H+ C 
Sbjct: 97  VAALVG---------------------------PRAR-----------AMWVSTFHSMCV 118

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I++    +  + S F I D+  S +L+    +             L      +     D
Sbjct: 119 RILRAEAAKLGLKSSFTIYDQGDSVRLMTMVARDLDLDAKRYPGRSLAAQVSNLKNELVD 178

Query: 202 ED 203
           E+
Sbjct: 179 EE 180


>gi|297537598|ref|YP_003673367.1| UvrD/REP helicase [Methylotenera sp. 301]
 gi|297256945|gb|ADI28790.1| UvrD/REP helicase [Methylotenera sp. 301]
          Length = 732

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 44/193 (22%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++   ++QL A   P +SA + A AGSGKT +L  R+  L+      P+ LL +T T  
Sbjct: 7   LLTGLNNKQLEAVTLPQQSALILAGAGSGKTRVLTARIAWLIQTGQVSPTGLLAVTFTNK 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                                           G+ V
Sbjct: 67  AAKEMLTRITASLPI--------------------------------------NTRGMWV 88

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    EA + + F I D      +I+   K       +D+ +   K   
Sbjct: 89  GTFHGLCNRLLRAHHREAGLPASFQILDISDQLSVIKRLMKLM----NVDDEKFPPKQVQ 144

Query: 194 EILEISNDEDIET 206
             +    DE +  
Sbjct: 145 NFINGCKDEGLRA 157


>gi|294673714|ref|YP_003574330.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23]
 gi|294472187|gb|ADE81576.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23]
          Length = 809

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID++ +    Q +A +    ++ V A AGSGKT +L  ++  LL     P  +L LT T 
Sbjct: 3   IDILRELNDSQRVAVEYCDGASLVIAGAGSGKTRVLTYKIAWLLEQGMKPWQILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                       E    L+
Sbjct: 63  KAAREMKDRIGRLVGE-------------------------------------EQARYLQ 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++    +    ++F I D+  ++ L++   K  
Sbjct: 86  MGTFHSVFARILRVEADKIGYNANFTIYDQTDARSLVKTIIKEM 129


>gi|319942765|ref|ZP_08017069.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis
           3_1_45B]
 gi|319803645|gb|EFW00595.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis
           3_1_45B]
          Length = 816

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 66/193 (34%), Gaps = 44/193 (22%)

Query: 15  DLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D+++    EQ    + P  S  + A AGSGKT +L  R+  LL  N A    +L +T T 
Sbjct: 4   DILANLNPEQHRAVTAPEESVLILAGAGSGKTRVLTTRIAWLLEHNLATTGEILAVTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                          D+ +              + 
Sbjct: 64  KAAKEMLTRLEGMI------------------------PYDLRR--------------MW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H  C  I++    EA +   F I D      L     K  + +  +D  +   K  
Sbjct: 86  VGTFHGLCNRILRIHAQEAGLPKTFQILDSGDQLSL----VKRLMKAANIDVEKTDPKQV 141

Query: 193 YEILEISNDEDIE 205
              +    +  + 
Sbjct: 142 VNFINWCKENGLR 154


>gi|86739360|ref|YP_479760.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3]
 gi|86566222|gb|ABD10031.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3]
          Length = 838

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++    ++           V A AGSGKT +L  R+  LL A    P  +L +T T
Sbjct: 61  LLDGLNL--QQRAAVVHIGAPLLVVAGAGSGKTRVLTHRIAYLLAARGVRPGEMLAITFT 118

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                             +AR            +
Sbjct: 119 NKAANEMRERVSALVG---------------------------PRAR-----------AM 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I++         S F+I D   +++LI    +  
Sbjct: 141 WVSTFHSACVRILRSEAKRLGFGSTFSIYDAADAQRLITLVTRDL 185


>gi|240172870|ref|ZP_04751529.1| putative ATP dependent dna helicase [Mycobacterium kansasii ATCC
           12478]
          Length = 768

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 53/213 (24%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63
           ++  E  + +D ++  + + +L         + A AGSGKT +L +R+  L+ A      
Sbjct: 7   DAKSETDQLLDGLNPQQRQAVL--HEGAPLLIVAGAGSGKTAVLTRRIAYLIAARGVAVG 64

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AAAEM  RV+ ++ A                           +AR+    
Sbjct: 65  QILAITFTNKAAAEMRERVVRLVGA---------------------------RARY---- 93

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS------- 175
                  + V T H+ C  I++        + S+F+I D + S++L++   +        
Sbjct: 94  -------MWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRRLLQMIGRDMGLDIKR 146

Query: 176 ----TLASIMLDNNEELKKAFYEILEISNDEDI 204
                LA+ + +   EL      +  +++D D 
Sbjct: 147 YSPRLLANAISNLKNELIDPHRALAHLTDDSDD 179


>gi|268680529|ref|YP_003304960.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618560|gb|ACZ12925.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 907

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 12/203 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R L LL   A+   ++ LT T  +A EM  R+ E +    +  
Sbjct: 7   LALEASAGSGKTFALSVRYLSLLFMGANAQKIVALTFTNKSAHEMKTRIFETLKDLENKE 66

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           +    AE T    +   +      RHLL         +K+ T+ AF   I++ F L   +
Sbjct: 67  ELHAIAEQTGKSEEVLLREKEHVLRHLLQ------ADIKISTLDAFFALILRHFALNVGL 120

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
              F+I +E   +KLIE+       ++    N       + + E     D+ +L+  +  
Sbjct: 121 QPDFSIGEETLDEKLIEQFI-----ALCKSKNLYRSLIAFTLQEDKKLGDVFSLLHFLYQ 175

Query: 214 NRTALKLIFFFF-SYLWRRKIIE 235
            ++ L+L  F   SY   +  +E
Sbjct: 176 KKSELRLDAFPEASYPSLQPCLE 198


>gi|210629805|ref|ZP_03296129.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279]
 gi|210160798|gb|EEA91769.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279]
          Length = 660

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 40/161 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ID+++  + E +L ++      V A AGSGKT +L  R+ R++      P  +L +T T 
Sbjct: 111 IDILNPAQREAVLTTE--GPLLVLAGAGSGKTRVLTFRIARMIGDLGIRPWQILAITFTN 168

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  ++                                           G+ 
Sbjct: 169 KAAAEMRERLGAMLPDGGMR-------------------------------------GMW 191

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           V T HA C  I+++       T  F I D++ S++++ E  
Sbjct: 192 VCTFHAMCVRILREDADLLGYTGQFTIYDDDDSRRMVREIM 232


>gi|319782887|ref|YP_004142363.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168775|gb|ADV12313.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 861

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 42/196 (21%)

Query: 10  HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           H+   D +     EQ LA + T     V A AG+GKT +L  R+  +L    A PS +L 
Sbjct: 35  HNNAPDYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAYILDTKRAWPSEILA 94

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  +I   +                                     
Sbjct: 95  VTFTNKAAREMKQRIGILIGEGNVE----------------------------------- 119

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G   + T H+    ++++    A + S F I D +   +LI++     + +  LD+   
Sbjct: 120 -GMPWLGTFHSIGVKLLRRHAELAGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRW 174

Query: 188 LKKAFYEILEISNDED 203
             K F ++++   ++ 
Sbjct: 175 PAKQFAQMIDGWKNKG 190


>gi|284928732|ref|YP_003421254.1| Rep family ATP-dependent DNA helicase [cyanobacterium UCYN-A]
 gi|284809191|gb|ADB94896.1| ATP-dependent DNA helicase, Rep family [cyanobacterium UCYN-A]
          Length = 772

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 34/238 (14%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           D +S+    Q  A +       V A AGSGKT  L  R+  L++    +P ++L +T T 
Sbjct: 6   DFLSKLNHSQRCAVEHFCGPLLVIAGAGSGKTRALTYRIANLIIYNKVNPESILAVTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGG 130
            AA EM  R+           D++L+ EI+    K+P  S     +  L++ +  +T   
Sbjct: 66  KAAKEMKDRL-----------DKLLAQEISSKNYKQPFDSLSEFNQKKLLSFIYKKTTKQ 114

Query: 131 LKVQTIHAFCEAIMQQFPLEANI---------TSHFAIADEEQSKKLIEEAKKSTLASIM 181
           L + T H+ C  I++    + N            +F+I DE   + +++      L    
Sbjct: 115 LWIGTFHSLCARILR---YDINKYQDSKKRKWDRNFSIFDESDVQNILKNI---ILKQFN 168

Query: 182 LDNNEELKKAFYEILEISNDEDI--ETLISD--IISNRTALKLIFFFFSYLWRRKIIE 235
           LD      +A    +  + +  +  E  + +      R   ++   + + L     ++
Sbjct: 169 LDEKTFNPRAIRYAISSAKNLGLSPEEYLKEHSYSKGRVIAEIYDEYQTQLAENNALD 226


>gi|91974519|ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91680975|gb|ABE37277.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
          Length = 1115

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 8/202 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I    +     +    +  V A AGSGKT ++  RV  L      P  +  +T T+ AA+
Sbjct: 4   IPDLVARARALTAIENTLLVEAGAGSGKTSVMAGRVAVLFGKGVEPKNIAAITFTELAAS 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ +  TA S         +       +  K+++ +A        ++   L   TI
Sbjct: 64  ELRLRIEKFTTALSLGDVPPDLTQAFPEGVPEAEKANLYRA-------CQSFDQLACTTI 116

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFYEI 195
           H F +++++ +P EA I     I D ++++    E   + L   + +D+ + L       
Sbjct: 117 HGFAQSLIKPYPAEAGIDPGADIVDPDEAELAFGERYDAWLKQRLSVDDADGLVAQLVLA 176

Query: 196 LEISNDEDIETLISDIISNRTA 217
            E    + IE +   +  NR A
Sbjct: 177 DEGGGLKLIEEVAQFLRKNRDA 198


>gi|167038090|ref|YP_001665668.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116497|ref|YP_004186656.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856924|gb|ABY95332.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929588|gb|ADV80273.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 711

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 40/160 (25%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           +    ++           + A AGSGKT +L  R+  L+      PS +L +T T  AA 
Sbjct: 7   NLNDKQREAVMTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAE 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +++                                          G L V T 
Sbjct: 67  EMKTRVEDLLGYI---------------------------------------GDLWVSTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+ C  I+++   +     +F I D    K LI+E  K  
Sbjct: 88  HSACVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127


>gi|212716069|ref|ZP_03324197.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661436|gb|EEB22011.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
           16992]
          Length = 907

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 39/156 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI     +Q+ A     ++  + A AGSGKT +L +R+  LL      S++L +T T  A
Sbjct: 31  LIKDLNPQQMEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKA 90

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+  ++   +                                        + + 
Sbjct: 91  AAEMRERLAALVGPEAEH--------------------------------------MWIS 112

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H+ C  I+++   E  +TS F+I D    ++L++
Sbjct: 113 TFHSACVRILRRDGKEIGLTSGFSIYDTADCERLVK 148


>gi|83951554|ref|ZP_00960286.1| DNA helicase II, putative [Roseovarius nubinhibens ISM]
 gi|83836560|gb|EAP75857.1| DNA helicase II, putative [Roseovarius nubinhibens ISM]
          Length = 782

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + E +   D      + A AG+GKT  L  R+  LL    A P  +L +T T
Sbjct: 27  YLDGLNPEQREAVERLD--GPVLMLAGAGTGKTKALTSRIAHLLSTGSARPDEILAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV   +                                          G  
Sbjct: 85  NKAAREMKDRVAAHLGEAVE-------------------------------------GMR 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  ++++      + S+F I D +   +L+++  +    +  +D+     + 
Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQLVQ----AAGIDDKRWPARQ 163

Query: 192 FYEILEISNDEDI 204
              +++   +   
Sbjct: 164 LAGVIDQWKNRAW 176


>gi|77407976|ref|ZP_00784726.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
 gi|77173434|gb|EAO76553.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
          Length = 1207

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIESLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I                    +    ++    +  L   L       + T+ AF
Sbjct: 89  ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            + I+ Q+     I+  F I  D+ +   +  E      +  M   N     +F +++  
Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            S +        +++      K+  F  S    ++ ++
Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSIDNPKRWMQ 219


>gi|76787847|ref|YP_329619.1| exonuclease RexA [Streptococcus agalactiae A909]
 gi|77406401|ref|ZP_00783461.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|77410683|ref|ZP_00787042.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|123601917|sp|Q3K1I4|ADDA_STRA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|76562904|gb|ABA45488.1| exonuclease RexA [Streptococcus agalactiae A909]
 gi|77163219|gb|EAO74171.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|77174992|gb|EAO77801.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1207

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I                    +    ++    +  L   L       + T+ AF
Sbjct: 89  ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            + I+ Q+     I+  F I  D+ +   +  E      +  M   N     +F +++  
Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            S +        +++      K+  F  S    ++ ++
Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 219


>gi|326771959|ref|ZP_08231244.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505]
 gi|326638092|gb|EGE38993.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505]
          Length = 957

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 41/172 (23%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           +  + +E I  ++   +++   +       + A AGSGKT +L  R+  L+    A P  
Sbjct: 101 TVSDPAELIRGLN--PAQESAVTHAGAPLLIIAGAGSGKTRVLTHRIAHLIATGRARPGE 158

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AAAEM  RV  ++                                      
Sbjct: 159 ILAITFTNKAAAEMRERVTALVGPAGE--------------------------------- 185

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 + V T H+ C  I+++    A + S F+I D   S +LI    +  
Sbjct: 186 -----RMWVSTFHSACVRILRREHEAAGLRSTFSIYDAADSTRLITLIVREL 232


>gi|22537037|ref|NP_687888.1| exonuclease RexA [Streptococcus agalactiae 2603V/R]
 gi|81588583|sp|Q8E061|ADDA_STRA5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|22533894|gb|AAM99760.1|AE014231_18 exonuclease RexA [Streptococcus agalactiae 2603V/R]
          Length = 1207

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I                    +    ++    +  L   L       + T+ AF
Sbjct: 89  ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            + I+ Q+     I+  F I  D+ +   +  E      +  M   N     +F +++  
Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            S +        +++      K+  F  S    ++ ++
Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 219


>gi|331270358|ref|YP_004396850.1| UvrD/REP helicase [Clostridium botulinum BKT015925]
 gi|329126908|gb|AEB76853.1| UvrD/REP helicase [Clostridium botulinum BKT015925]
          Length = 761

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71
           +DL S    EQ   A+       V A AGSGKT +L  R+  ++     P   +L +T T
Sbjct: 1   MDLKSLLNEEQYKAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ ++++                                       +   +
Sbjct: 61  NKAAGEMKDRIKKLVS--------------------------------------NSIDSM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +   + +FAI D    K LI++  K  
Sbjct: 83  WVSTFHSCCVRILRREIDKLGYSKNFAIYDSSDQKNLIKQCMKEL 127


>gi|296272052|ref|YP_003654683.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096227|gb|ADG92177.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 911

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 12/201 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + LLL  A P+ +L LT T  AA EMS R+ + +     L 
Sbjct: 5   LALKASAGSGKTFALTVRYISLLLKGASPTEILALTFTNKAAKEMSERIFKTLK---SLG 61

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           ++ +  E      +   +  ++K  +L+   L     L + TI  F   I+++F     +
Sbjct: 62  EDKVYLEQISSVSELSVEQILNKKDYLINLYLN--SELSIYTIDKFVNKILREFSGYIGV 119

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
              F+I  +      IE  +   L S+ L+N ++L    +   E      I  +  ++  
Sbjct: 120 DDDFSIKQDN-----IENLEYKFLQSLNLENFDKLIN--FSYYEAKKFNSIFDIFLNLNE 172

Query: 214 NRTALKLIFFFFSYLWRRKII 234
                K++    + +  +K +
Sbjct: 173 KNEDFKIVPIEENLINLQKNL 193


>gi|254708085|ref|ZP_05169913.1| DNA helicase II [Brucella pinnipedialis M163/99/10]
          Length = 611

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 97  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|220911705|ref|YP_002487014.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6]
 gi|219858583|gb|ACL38925.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6]
          Length = 837

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 45/205 (21%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           +H    + ++  + ++  + E +  +    +  + A AGSGKT +L  R+  L+    AH
Sbjct: 56  HHGRRLDPAKLTEGLNPQQEEAVKHA--GSALLIVAGAGSGKTRVLSNRIAYLIATGRAH 113

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
              +L +T T  AAAEM  R+  ++   + +                             
Sbjct: 114 HGEILAITFTNKAAAEMRERIEALVGGRAKI----------------------------- 144

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                    + + T H+ C  I++Q      + S+F+I D   S +L+ +  K    ++ 
Sbjct: 145 ---------MWISTFHSSCVRILRQEAANVGLKSNFSIYDAADSLRLVTQVSK----ALD 191

Query: 182 LDNNEELKKAFYEILEISNDEDIET 206
           LD  +   KA    +    +E I+ 
Sbjct: 192 LDPKKFAPKAIQHKISALKNELIDA 216


>gi|88808097|ref|ZP_01123608.1| UvrD/REP helicase [Synechococcus sp. WH 7805]
 gi|88788136|gb|EAR19292.1| UvrD/REP helicase [Synechococcus sp. WH 7805]
          Length = 794

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 19/174 (10%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P+ +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130
             AA EM  R+  ++      S            G+  +     + R L   I  E    
Sbjct: 61  NKAAREMKERLELLLAQRLAQSQ----------FGQPWSTLPPVEQRQLRSRIYREVTKE 110

Query: 131 LKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLA 178
           L + T HA    +++    +F     ++    F+I DE  ++ L++E     L 
Sbjct: 111 LWIGTFHALFARMLRYDIDKFKDSEGLSWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|126649601|ref|ZP_01721842.1| PcrA [Bacillus sp. B14905]
 gi|126593926|gb|EAZ87849.1| PcrA [Bacillus sp. B14905]
          Length = 750

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 42/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      ++           + A AGSGKT +L  R+  L++    +PS +L +T T  A
Sbjct: 9   LAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  I+                                        T   + V 
Sbjct: 69  AREMRERIDGILGNG-------------------------------------TGDSMWVS 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++   +  I+ +F+I D      +I    K+ +    +D      +A   
Sbjct: 92  TFHSMCVRILRRNIDQLGISRNFSILDSTDQLSVI----KNVMKDENIDPKRFEPRAILN 147

Query: 195 ILEISNDE 202
            +  + +E
Sbjct: 148 AISAAKNE 155


>gi|325696015|gb|EGD37906.1| exonuclease RexA [Streptococcus sanguinis SK160]
          Length = 1224

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   +++  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSRLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|210623345|ref|ZP_03293743.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275]
 gi|210153655|gb|EEA84661.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275]
          Length = 755

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 42/189 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ++L +   S++           + A AGSGKT +L  R+  L+     P+ +L +T T  
Sbjct: 1   MNLDTLNPSQRRAVERTEGPVLILAGAGSGKTRVLTTRIAHLIDKGVQPANILAITFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV E + + +                                        + +
Sbjct: 61  AANEMRERVEETVESDTK--------------------------------------DMWI 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++   +      F I D      LI++     L  + + +     K   
Sbjct: 83  STFHSCCVRILRKDINKIGYNRSFVIYDAADQVTLIKDC----LKELNISDKAFEPKTVI 138

Query: 194 EILEISNDE 202
             +  + D+
Sbjct: 139 SYISGAKDK 147


>gi|108763229|ref|YP_630836.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108467109|gb|ABF92294.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK
           1622]
          Length = 1220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 11/196 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN------AHPSTLLCLTHTKAAAAEMSHRVLE 84
            R+  + A AG+GKT+ LV   L LL           PS L  LT T  AAAEM  RV +
Sbjct: 11  ERNLALMAGAGAGKTYSLVTMTLHLLAGARVAGGAVRPSRLCMLTFTDKAAAEMRSRVRQ 70

Query: 85  IITAWSHLSDEI-LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            +   +     +    ++ +   +      +  A   L   L   G   V T H+ C  +
Sbjct: 71  RLDGLAQGDTRLDQEVDLRESLARLDKPFPLPDAWRQLREEL---GAATVGTFHSLCGQL 127

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +++ P    I  +F + D  ++  L+++  +  +   +   + ++++   E+    +   
Sbjct: 128 LRRAPPAVGIDPNFEVLDSLEATGLVQDVCERVVLDALEAGDAQVRELCQELGFSGSGFS 187

Query: 204 IETLISDIISNRTALK 219
            + L++ +++    L+
Sbjct: 188 -DGLVAALMAVYGKLR 202


>gi|238020268|ref|ZP_04600694.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147]
 gi|237868662|gb|EEP69666.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147]
          Length = 746

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 66/202 (32%), Gaps = 44/202 (21%)

Query: 7   FQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           F   + +  L++    EQL A   P +SA V A AGSGKT +L  RV  LL    A   +
Sbjct: 3   FSSENPSQSLLNNLNPEQLAAVTYPPQSALVLAGAGSGKTRVLTTRVAWLLQNQMASVRS 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++                                      
Sbjct: 63  ILAVTFTNKAAKEMQTRLSAMLP------------------------------------- 85

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                 + + T H  C   ++    EA +   F I D      LI    K  L  + +  
Sbjct: 86  -LNLRAMWLGTFHGLCHRFLRLHYREAGLPQTFQILDSSDQLSLI----KRLLKQLNISE 140

Query: 185 NEELKKAFYEILEISNDEDIET 206
                +     +    +  +  
Sbjct: 141 ESLAPRVLQGFINAQKEAGLRA 162


>gi|223044036|ref|ZP_03614076.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14]
 gi|222442579|gb|EEE48684.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14]
          Length = 731

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +    +            + A AGSGKT +L  R+  LL+  +  P  +L +T T  AA 
Sbjct: 7   NMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLVEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +++   + +                                      + + T 
Sbjct: 67  EMKERVEQLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|283782861|ref|YP_003373615.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
           409-05]
 gi|283441838|gb|ADB14304.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
           409-05]
          Length = 1023

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 41/175 (23%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH 61
           +     +  + +D ++  +S+ +    P     + A AGSGKT +L +R+  +L    A 
Sbjct: 130 HSRVAVDAQKLLDGLNPQQSQAVQYDGPA--LLIGAGAGSGKTRVLTRRIAWILSQKGAW 187

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           PS +L +T T  AAAEM  R+ ++I + +                               
Sbjct: 188 PSQILAITFTNKAAAEMRERLSKLIGSEA------------------------------- 216

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    + V T H+ C  I+++      + S F+I D    ++L++      
Sbjct: 217 -------NTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERLVKIIATEL 264


>gi|225027982|ref|ZP_03717174.1| hypothetical protein EUBHAL_02242 [Eubacterium hallii DSM 3353]
 gi|224954696|gb|EEG35905.1| hypothetical protein EUBHAL_02242 [Eubacterium hallii DSM 3353]
          Length = 738

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 43/184 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT  L  R+  L+      P  +L +T T  AA EM
Sbjct: 8   NNEQREAVFCTEGPLLMLAGAGSGKTRSLTHRIAYLIEEKGVAPWNILAITFTNKAAQEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   S                                        + + T HA
Sbjct: 68  RERVDALVGYGSE--------------------------------------DIWISTFHA 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I+++         +F I D    K L++E     L  + +D  + L+++    +  
Sbjct: 90  TCSRILRRHIDLLGYDRNFTIYDASDQKSLMKE----VLKEMKIDTKQFLERSVMSEISS 145

Query: 199 SNDE 202
           + +E
Sbjct: 146 AKNE 149


>gi|312622478|ref|YP_004024091.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202945|gb|ADQ46272.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 714

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ++ + +   +Q  A         V A AGSGKT ++  R+  +L    A P  +L +T T
Sbjct: 1   MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLADPGNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +++                                      ++   +
Sbjct: 61  NKAADEMKERIKRLVST-------------------------------------QSFSEM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I++        +++F I D +   +L++E     
Sbjct: 84  WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRNQLLKECFDKL 128


>gi|301310450|ref|ZP_07216389.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3]
 gi|300832024|gb|EFK62655.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3]
          Length = 779

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 5   EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  I                                        +T   L
Sbjct: 63  NKAAREMKERIAAITGD-------------------------------------QTARRL 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D   SK L++   K  
Sbjct: 86  WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 130


>gi|322516094|ref|ZP_08069031.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124]
 gi|322125509|gb|EFX96855.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124]
          Length = 1217

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 79/223 (35%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L ++        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +T                   ++  +++  + R  L   +   G   + T+ AF
Sbjct: 89  ERLEKRLT-------------------EQLGQAETDEERAFLSDQIAKIGTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196
            + ++ Q+     ++  F I  D  +   +  E         M   + +L +        
Sbjct: 130 TQKLVNQYGYLLGVSPIFRIMTDPAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
                +    L+ D+           F  +     K + ++L 
Sbjct: 190 HSKTSKAFRDLVYDV---------YNFSQATAGPEKWLRQNLL 223


>gi|227498096|ref|ZP_03928269.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226832489|gb|EEH64872.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 972

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +E +  ++  + +    +       + A AGSGKT +L  R+  LL    A P  +L +T
Sbjct: 130 TELVKGLNPAQEQ--AVTHVGAPLLIIAGAGSGKTRVLTHRIAYLLATGRARPGEILAIT 187

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV  ++                                           
Sbjct: 188 FTNKAAAEMRERVAGLVGPAGE-------------------------------------- 209

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++    A + S F+I D   S++LI    K  
Sbjct: 210 RMWVSTFHSACVRILRREHEAAGLRSTFSIYDSADSQRLITLIVKEL 256


>gi|239625785|ref|ZP_04668816.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520015|gb|EEQ59881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 854

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 45/189 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           D ++  + E            + A AGSGKT +L  RV  L+   + +P  +L +T T  
Sbjct: 5   DTLNPMQKE--AVFHTEGPLLILAGAGSGKTRVLTHRVAYLIDEKDVNPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   +                                        + V
Sbjct: 63  AAGEMRERVDQLVGFGAE--------------------------------------SIWV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++       T+ F+I D +  K L+++       S+ +D  +  +++  
Sbjct: 85  STFHSTCVRILRRHIECLGYTTSFSIYDSDDQKTLMKQ----VFKSLDVDTKQFKERSVL 140

Query: 194 EILEISNDE 202
            ++  + D+
Sbjct: 141 GVISSAKDK 149


>gi|255013887|ref|ZP_05286013.1| putative helicase [Bacteroides sp. 2_1_7]
          Length = 780

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 5   EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  I                                        +T   L
Sbjct: 63  NKAAREMKERIAAITGD-------------------------------------QTARRL 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D   SK L++   K  
Sbjct: 86  WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 130


>gi|253827592|ref|ZP_04870477.1| putative helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510998|gb|EES89657.1| putative helicase [Helicobacter canadensis MIT 98-5491]
          Length = 919

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 4/150 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             ++A+AGSGKT+ LV R L LL   A PS +L LT TK AA EM  R+++ I       
Sbjct: 6   LCLNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIVKSIQEIYQRK 65

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           ++    +  +       +    K   +    L     LK+ TI +F + I++ F     +
Sbjct: 66  NDREYIKKLEFISINDLEGIEQKITKIYYEFLR--EDLKITTIDSFFQRILKSFCWYVGV 123

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            ++F I +E+   ++I E     L+    +
Sbjct: 124 ENNFEIQNED--FEIITEIFLELLSDEAFE 151


>gi|146298462|ref|YP_001193053.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
 gi|146152880|gb|ABQ03734.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
          Length = 1052

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 78/172 (45%), Gaps = 10/172 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           A+AGSGKT+ LV+  L+++L    N     +L +T T  A  EM  R++  ++ ++    
Sbjct: 11  ASAGSGKTYTLVKEYLKIILSSPKNDAYRNILAITFTNKAVHEMKSRIVGSLSEFAKEEP 70

Query: 95  EILSAEITKIQGKKPNKSDMS---KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
              + ++ +   +    S +    K++ ++  ++       + TI  F   +++ F  + 
Sbjct: 71  SAKAVDLMEDLSRDTGLSIIQLKVKSQSIIKHLIHNYAAFDISTIDKFTHKVIRAFAHDL 130

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           N+   F +  + ++  L+ EA  + +A    D  E L K   +      D+D
Sbjct: 131 NLPMTFEVTLDTEN--LLVEAVDAIIAQAGQD--ETLTKLLIDFTMEKTDDD 178


>gi|317488290|ref|ZP_07946855.1| hypothetical protein HMPREF1023_00553 [Eggerthella sp. 1_3_56FAA]
 gi|316912607|gb|EFV34151.1| hypothetical protein HMPREF1023_00553 [Eggerthella sp. 1_3_56FAA]
          Length = 191

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 39/188 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68
           ++L + T  ++           VSA AGSGKT  L QR+   LL  + P       +L +
Sbjct: 1   MNLSTCTPGQRQSIEHVRGPLLVSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AAAE+  RV   +                             +A  L    L   
Sbjct: 61  TFTEKAAAEIKARVKRTL-----------------------------RAEGLAEEALRV- 90

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
            G  + TIH  C  I++   L+  +   F I  + +      EA    +   + D+N+ +
Sbjct: 91  DGAWISTIHGMCARILRAHALDLGLDPAFGIMGDAE----RAEAVADAIDGALGDDNDII 146

Query: 189 KKAFYEIL 196
            +  Y  L
Sbjct: 147 ARGSYAAL 154


>gi|16125775|ref|NP_420339.1| DNA helicase II [Caulobacter crescentus CB15]
 gi|13422909|gb|AAK23507.1| DNA helicase II [Caulobacter crescentus CB15]
          Length = 805

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++    ++           V A AG+GKT +L  R+  +L    A P  +L +T T
Sbjct: 39  YLDGLN--PEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFT 96

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  II                      P    +                 
Sbjct: 97  NKAAREMRERITHIIG---------------------PEAEGLR---------------- 119

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+    I+++      + S++ I D + +++L+++     + +  +D      + 
Sbjct: 120 WLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDNERLLKQ----LIEAENIDAKRWTPRI 175

Query: 192 FYEILEISNDEDI 204
             +I++   +   
Sbjct: 176 LSQIIDGWKNRGW 188


>gi|325694960|gb|EGD36865.1| exonuclease RexA [Streptococcus sanguinis SK150]
          Length = 1224

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   +++  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEAESPELKQYLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSRLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWMEETFL 223


>gi|320104388|ref|YP_004179979.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
 gi|319751670|gb|ADV63430.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
          Length = 841

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 40/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   T +++   +       V A AGSGKT ++ +R+  L+ + A  S++L +T T  AA
Sbjct: 22  MADLTPAQRQAVAHLEGPMLVLAGAGSGKTRVITRRIAYLIRSGAVGSSILAITFTNKAA 81

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ +I+                                           G+ V T
Sbjct: 82  GEMKRRIEDIVPN----------------------------------------SGVWVGT 101

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+ C  +M+ +     +   F I D     K+I+   +  
Sbjct: 102 FHSVCARLMRTYAPLIGLDRGFTIHDSSDRIKVIKACVRQL 142


>gi|258651495|ref|YP_003200651.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM
           44233]
 gi|258554720|gb|ACV77662.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM
           44233]
          Length = 864

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 41/163 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           E +D ++  + E            V A AGSGKT +L +R+  LL +  A P  +L +T 
Sbjct: 34  ELLDGLNPPQRE--AVEHRGAPLLVVAGAGSGKTRVLTRRIAYLLAVGGAQPGEILAITF 91

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV +++                                            
Sbjct: 92  TNKAAREMKDRVTDLVGGRGR--------------------------------------S 113

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           + V T H+ C  I++    +  + + F I D+  S++L +   
Sbjct: 114 MWVSTFHSMCVRILRAEATQIGLKTTFTIYDQADSQRLAQLVA 156


>gi|291288294|ref|YP_003505110.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885454|gb|ADD69154.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809]
          Length = 703

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCL 68
             +  D +++ + E    +       V A AG+GKT ++  R+  L+     PS  +L +
Sbjct: 1   MPDYKDELNKAQYE--AVTTTEGPLLVLAGAGTGKTRVITYRIAHLINNMRVPSRNILAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+L+++                                          
Sbjct: 59  TFTNKAAGEMKERILKLVDYED-------------------------------------- 80

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T H+ C  ++++ P +A +   F I D++     I +  K+ 
Sbjct: 81  ADIWIGTFHSICLRLLRRDPEKAGLEPGFGILDQDDRLATIRDIIKNL 128


>gi|261337326|ref|ZP_05965210.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM
           20093]
 gi|270277699|gb|EFA23553.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM
           20093]
          Length = 878

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q LA   +     + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 13  ELVGDLNEQQALAVQYSGPALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 73  KAAAEMRERLEALIGPEAQ--------------------------------------RMW 94

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I+++      + S F+I D    ++LI+      
Sbjct: 95  VSTFHSACVRILRRNGESVGLKSGFSIYDTADCERLIKLIASDL 138


>gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
           ATCC 19977]
 gi|169240116|emb|CAM61144.1| Putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus]
          Length = 807

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 54/211 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++   +       + A AGSGKT +L +R+  LL A +  P  +L +T T  AAAEM
Sbjct: 28  NPQQRAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAAAEM 87

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  I+                                            + V T H+
Sbjct: 88  RERVGRIVANRVQ--------------------------------------SMWVSTFHS 109

Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKS-----------TLASIMLDNNE 186
            C  I++ Q  L   + S+F+I D + S++L++   +             LA+ + +   
Sbjct: 110 SCVRILRNQASLLPGLNSNFSIYDSDDSRRLLQMIGRDMGLDIKRYSPRLLATAISNLKN 169

Query: 187 EL---KKAFYEILEISNDEDIETLISDIISN 214
           EL   ++A   +     D ++   +  I+++
Sbjct: 170 ELISPEQAVANLTAGGQDGELRGDLPQIVAD 200


>gi|215402750|ref|ZP_03414931.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           02_1987]
 gi|289744679|ref|ZP_06504057.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987]
 gi|289685207|gb|EFD52695.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987]
          Length = 770

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             KAR+           
Sbjct: 76  TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|169825828|ref|YP_001695986.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
 gi|168990316|gb|ACA37856.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
          Length = 749

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 42/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      ++           + A AGSGKT +L  R+  L++    +PS +L +T T  A
Sbjct: 9   LAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  I+                                        T   + V 
Sbjct: 69  AREMRERIDGILGNG-------------------------------------TGDSMWVS 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++   +  I+ +F+I D      +I    K+ +    +D      +A   
Sbjct: 92  TFHSMCVRILRRNIDQLGISRNFSILDSTDQLSVI----KNVMKDENIDPKRFEPRAILN 147

Query: 195 ILEISNDE 202
            +  + +E
Sbjct: 148 AISAAKNE 155


>gi|288919731|ref|ZP_06414058.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288348920|gb|EFC83170.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 733

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 80/229 (34%), Gaps = 49/229 (21%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E ++ ++    +            V A AGSGKT +L  R+  LL A    P  +L +T 
Sbjct: 72  ELLEGLN--PQQHAAVVHAGAPLLVVAGAGSGKTRVLTHRIAYLLAARGVRPGEILAITF 129

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++                             +AR            
Sbjct: 130 TNKAAGEMKERVEALVGG---------------------------RAR-----------A 151

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I++         S F+I D   +++L+    +     + LD      K
Sbjct: 152 MWVSTFHSACVRILRSEAARLGFASSFSIYDAADAQRLLTLVTRD----LDLDPKRHTAK 207

Query: 191 AFYEILEISNDE--DIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
           A    +    +E  D ET      S+  RT  ++   +   L +   ++
Sbjct: 208 ALAVAISALKNELVDWETARDRAASHIERTVAEVYASYQQRLAQANALD 256


>gi|298375530|ref|ZP_06985487.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19]
 gi|298268030|gb|EFI09686.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19]
          Length = 778

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 3   EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  I                                        +T   L
Sbjct: 61  NKAAREMKERIAAITGD-------------------------------------QTARRL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D   SK L++   K  
Sbjct: 84  WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 128


>gi|150007586|ref|YP_001302329.1| putative helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936010|gb|ABR42707.1| putative helicase [Parabacteroides distasonis ATCC 8503]
          Length = 780

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 5   EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  I                                        +T   L
Sbjct: 63  NKAAREMKERIAAITGD-------------------------------------QTARRL 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D   SK L++   K  
Sbjct: 86  WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 130


>gi|323351323|ref|ZP_08086979.1| exonuclease RexA [Streptococcus sanguinis VMC66]
 gi|322122547|gb|EFX94258.1| exonuclease RexA [Streptococcus sanguinis VMC66]
          Length = 1224

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDKILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   +++  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             N E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---NSERQDLFSRLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ ++++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLKETFL 223


>gi|228477150|ref|ZP_04061788.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126]
 gi|228251169|gb|EEK10340.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126]
          Length = 1217

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L ++        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +T                   ++  + +  + R  L   +   G   + T+ AF
Sbjct: 89  ERLEKRLT-------------------EQLGQVETDEERAFLSDQIAKIGTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ Q+     ++  F I  D  +   +  E         M   + +L +        
Sbjct: 130 TQKLVNQYGYLLGVSPIFRIMTDPAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVR--NF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           + +        D++ +     +  F  +     K + ++L 
Sbjct: 188 AGNGKTSKAFRDLVYD-----VYNFSQATAGPEKWLRQNLL 223


>gi|257784673|ref|YP_003179890.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
 gi|257473180|gb|ACV51299.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
          Length = 1165

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 39/199 (19%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTH 70
           T  ++       +  +V+A AGSGKT  L QR++  L   +              L +T 
Sbjct: 7   TPGQEKTIKTLDKPLFVAAGAGSGKTFTLTQRIVWALKEGSGADGKPYLSSLDQALIITF 66

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AAA E+  RV E +                               +  L +       
Sbjct: 67  TNAAATEIKERVREALE------------------------------KEGLHSAALQVDD 96

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TIH  C  I++   L+ ++   F I D+    +L+  + +  L  +  D +     
Sbjct: 97  AWISTIHGMCSRILKIHALDLDLDPEFEIIDDMTRNQLVTISIEEVLRELSQDESYAEFL 156

Query: 191 AFYEILEISNDEDIETLIS 209
           + Y     +    IETLIS
Sbjct: 157 STYAGNRDALKSRIETLIS 175


>gi|313893297|ref|ZP_07826872.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442193|gb|EFR60610.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 729

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L    K +Q           + A AGSGKT +L  R+  LL    +P  +L +T T  AA
Sbjct: 5   LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV  ++   +                                        + + T
Sbjct: 65  KEMKSRVEGLVGDVA--------------------------------------NRIWLST 86

Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+FC   ++ +        S+F I D   S+ +I+ A K+ 
Sbjct: 87  FHSFCAKFLRFELNNFLGYNSNFTIYDTSDSQAVIKAALKAL 128


>gi|145596329|ref|YP_001160626.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440]
 gi|145305666|gb|ABP56248.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440]
          Length = 795

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++  + E    +       + A AGSGKT +L  R+  LL A   HP  ++ +T T
Sbjct: 32  LLDGLNGPQRE--AVTHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARQVHPGEIIAITFT 89

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++   + L                                      +
Sbjct: 90  NKAAGEMKERVAQLVGPRARL--------------------------------------M 111

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I++     A + S F+I D + S++L++   +  
Sbjct: 112 WVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQLVAREL 156


>gi|260199970|ref|ZP_05767461.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T46]
 gi|289442365|ref|ZP_06432109.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46]
 gi|289415284|gb|EFD12524.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46]
          Length = 769

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             KAR+           
Sbjct: 76  TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|168334212|ref|ZP_02692415.1| ATP-dependent DNA helicase PcrA [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 731

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 38/161 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++    ++           + A AGSGKT +L QR+  L+  +   P  +L +T T  AA
Sbjct: 1   MNLNDRQKKAVQHVNGPLLILAGAGSGKTRVLTQRIANLIENHQVQPWEILAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+   +                                       +    + + T
Sbjct: 61  AEMRERMTNDVGE-------------------------------------DVLKNMWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+ C  I+++F      T +F I D  + K  I++  K  
Sbjct: 84  FHSMCVRILRRFGESIGYTKYFTIYDSAEQKITIKDVMKEM 124


>gi|150397238|ref|YP_001327705.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
 gi|150028753|gb|ABR60870.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
          Length = 850

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 43/202 (21%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           + ++ ++  D +S    EQ  A +       V A AG+GKT +L  R+  +L    A PS
Sbjct: 33  AARDKAQRPDYLSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAFPS 92

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  R+  ++                                     
Sbjct: 93  QILAVTFTNKAAREMKERIGVLVGHAVE-------------------------------- 120

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                G   + T H+    ++++      + S F I D +   +LI++     + +  LD
Sbjct: 121 -----GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLD 171

Query: 184 NNEELKKAFYEILEISNDEDIE 205
           +     K F  +++   ++ ++
Sbjct: 172 DKRWPAKQFAGMIDTWKNKGLD 193


>gi|324991607|gb|EGC23540.1| exonuclease RexA [Streptococcus sanguinis SK353]
          Length = 1224

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   +++  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSRLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|320449643|ref|YP_004201739.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
 gi|320149812|gb|ADW21190.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
          Length = 708

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 73/220 (33%), Gaps = 53/220 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +  +++ + + +L       A V A AGSGKT  +V RV  L+      PS +L +T 
Sbjct: 12  ELLRSLNEAQRQAVL--HFEGPALVVAGAGSGKTRTVVHRVAYLIAKRGVFPSEILAVTF 69

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++                                          G 
Sbjct: 70  TNKAAEEMRERLKRMVKGG---------------------------------------GE 90

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LAS 179
           L V T H+    I++ +     +   F + DE+    LI+E  K             L  
Sbjct: 91  LWVSTFHSAALRILRVYGERVGLKPGFVVYDEDDQTALIKEVLKELGLAARPGPLKALLD 150

Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALK 219
              +  E  +    E+ +         L+  +     ALK
Sbjct: 151 RAKNRGEAPESLLSELPDYYAGLSRGRLLDVLKRYEEALK 190


>gi|313202687|ref|YP_004041344.1| ATP-dependent DNA helicase pcra [Paludibacter propionicigenes WB4]
 gi|312442003|gb|ADQ78359.1| ATP-dependent DNA helicase PcrA [Paludibacter propionicigenes WB4]
          Length = 769

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +  +++    Q  A + T  A  V A AGSGKT +L  ++  LL     PS++L LT T 
Sbjct: 3   LSFLNELNESQRSAVEYTEGASLVIAGAGSGKTRVLTYKIAYLLKNGMAPSSILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                       +T   L 
Sbjct: 63  KAAREMKERIAAMVGE-------------------------------------KTARYLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++        + +F I D   SK L++   K  
Sbjct: 86  MGTFHSVFSRILRSEAERIGYSKNFTIYDSADSKSLVKTIVKEL 129


>gi|282859649|ref|ZP_06268751.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010]
 gi|282587567|gb|EFB92770.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010]
          Length = 839

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 46/217 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D ++  + E +        + V A AGSGKT +L  ++  LL     P  +L LT T 
Sbjct: 2   ILDDLNSYQREAVEYC--NGPSLVVAGAGSGKTRVLTYKIAYLLEKGLKPWNILALTFTN 59

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +I  +                                          L 
Sbjct: 60  KAAREMKERIAKITHS-------------------------------------HDTNRLY 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    I++         S+F I DE  S+ L+    K+ + ++  D       + 
Sbjct: 83  MGTFHSIFARILRAEAHHIGYNSNFTIYDESDSRSLL----KNIIKAMGYDEKVYRPNSV 138

Query: 193 YEILEISNDEDI---ETLISDIISNRTALKLIFFFFS 226
           +  + ++ +  I   E     +  +R     + + +S
Sbjct: 139 HHFISMAKNHLITAEEYAHDKLAIDRDKQARMPYIYS 175


>gi|262199184|ref|YP_003270393.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262082531|gb|ACY18500.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 787

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++           V A AG+GKT +LV R+  ++     P  +L +T T  AA EM 
Sbjct: 8   NPAQRKAVEHGDGPLMVLAGAGTGKTRVLVNRIAHMVDRGVPPRDILAVTFTNKAAKEMR 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ E++   +                                        + + T HA 
Sbjct: 68  ERLRELLGMAA--------------------------------------NAMWIGTFHAT 89

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           C  +++       ++  F I D +  K+L+    K 
Sbjct: 90  CVKLLRIHGEHIGLSRDFTIFDSDDQKRLLNALIKE 125


>gi|254457061|ref|ZP_05070489.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
 gi|207085853|gb|EDZ63137.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
          Length = 905

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 14/175 (8%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +    A+AGSGKT +LV R L LL   A P+ +L LT T  AA EM  R++  +    H 
Sbjct: 5   NLAYEASAGSGKTFMLVVRYLSLLFKGATPNKILALTFTNKAAFEMQERIVLTLEELEHR 64

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            +     EI K+ G       + + + +L   L +    K+ TI  F   I+++F L A+
Sbjct: 65  GE---LDEIVKVTGFSREFL-LHERKRILDEFLNSNS--KIMTIDKFFAQILRKFSLYAS 118

Query: 153 ITSHFAIADEEQSKKLIEEAKKST--------LASIMLDNNEELKKAFYEILEIS 199
           +   F     +   KL+    K          L ++ L + + L   F  + E  
Sbjct: 119 LMPDFTTMSSQHELKLLSRFLKEVSVAGKKNTLITLSLQSKKRLGDIFTLLDEFY 173


>gi|260911425|ref|ZP_05918016.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634472|gb|EEX52571.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 823

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
             ++ +++++ E ++ +D      V A AGSGKT +L  ++  LL     P  +L LT T
Sbjct: 3   NLLEKLNESQREAVVYTD--GPQLVIAGAGSGKTRVLTFKIAHLLQLGLKPWNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                             +A+ L +         
Sbjct: 61  NKAANEMKARIGDLVGH--------------------------EEAKRLYM--------- 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H+    I++        + +F I DE  S+ LI+   K  
Sbjct: 86  --GTFHSIFSRILRVEAPYIGFSPNFTIYDETDSRSLIKAICKEM 128


>gi|227499501|ref|ZP_03929608.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098]
 gi|227218380|gb|EEI83631.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098]
          Length = 731

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ++L      ++           V A AGSGKT +L   +  L+      P  ++ +T T 
Sbjct: 1   MNLDGLNNMQKKAVLHDKGPLLVLAGAGSGKTRVLTTSIAYLIEEKGIDPRNIIAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++                                            L 
Sbjct: 61  KAANEMKQRISKLLNMDV--------------------------------------SHLW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I++    +     +F I D    + LI+E     
Sbjct: 83  IGTFHSICARILRMNIDKIGYDRNFTIYDTSDQRTLIKEIIDEL 126


>gi|256839771|ref|ZP_05545280.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13]
 gi|256738701|gb|EEU52026.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13]
          Length = 778

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E ++ +++++ E ++ ++    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 3   EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  I                                        +T   L
Sbjct: 61  NKAAREMKERIAAITGD-------------------------------------QTARRL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D   SK L++   K  
Sbjct: 84  WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 128


>gi|117927584|ref|YP_872135.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B]
 gi|117648047|gb|ABK52149.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B]
          Length = 763

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 63/194 (32%), Gaps = 40/194 (20%)

Query: 12  ETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +  DL+     +Q  A         V A AGSGKT +L +R+  LL      PS +L +T
Sbjct: 16  DVADLLDDLNPQQRAAVVHSGGPLLVVAGAGSGKTRVLTRRIAYLLRARGVAPSEILAIT 75

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++   +                                       
Sbjct: 76  FTNKAAGEMKRRLDGMVGRLAQ-------------------------------------- 97

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            + V T HA C  ++++      I S F I D   + +L+    +             L 
Sbjct: 98  AMWVMTFHAACVRMLRENARRIGIRSSFTIYDAADAVRLMTLVCRELDLDPRRYPPRSLS 157

Query: 190 KAFYEILEISNDED 203
                +     DED
Sbjct: 158 AQISNLKNELIDED 171


>gi|319789207|ref|YP_004150840.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
 gi|317113709|gb|ADU96199.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
          Length = 709

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 58/241 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +  ++ ++ E +L  D      V A AGSGKT ++  +V  ++      P  +L +T 
Sbjct: 3   ELLKTLNPSQREAVLHFD--SPLLVLAGAGSGKTRVITFKVAYMVKELRFEPERILAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV +++     +                                      
Sbjct: 61  TNKAAREMKERVEQLLGRSVPVL------------------------------------- 83

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LAS 179
             V T H+FC  ++++   E  ++  F I D E  K+L+ E  K             L++
Sbjct: 84  --VSTFHSFCVRLLRRHAEEVGLSREFVILDGEDRKRLLSEVVKELNLDPERYSPSSLSN 141

Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNR-TALKLIFFFFSYLWRRKIIEKSL 238
           ++ +    +K   Y +  +S + D    + ++ + R   L  + F    L+ R+++ +  
Sbjct: 142 LVSN----VKNGLYSLEGLSVEFDKFGQLFELYNRRLRELNAVDFDDLLLYGRELLSREE 197

Query: 239 W 239
           W
Sbjct: 198 W 198


>gi|237746997|ref|ZP_04577477.1| DNA helicase II [Oxalobacter formigenes HOxBLS]
 gi|229378348|gb|EEO28439.1| DNA helicase II [Oxalobacter formigenes HOxBLS]
          Length = 762

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 80/225 (35%), Gaps = 46/225 (20%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +++     EQL A   P++SA + A AGSGKT +L  R+  LL       S ++ +T T 
Sbjct: 3   NMLENLNPEQLAAVTLPSQSALILAGAGSGKTRVLTTRIAWLLKTGQVSTSGIMAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +  A                                         GL 
Sbjct: 63  KAAKEMMSRLSTLFPA--------------------------------------NTRGLW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H  C  +++    EA +   F I D +     I    K  L +  +D+ +   +  
Sbjct: 85  IGTFHGLCNRLLRLHYREAALPQAFNILDTQDQLSTI----KRLLKTNNIDDEKFPPRNL 140

Query: 193 YEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
              +  + +      + +   +  R  ++L   +     R  +++
Sbjct: 141 MYFINGAKERGFRASVIEAQDDYERKMVELYGLYEEQCQREGVVD 185


>gi|197116476|ref|YP_002136903.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem]
 gi|197085836|gb|ACH37107.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem]
          Length = 732

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 44/190 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++           V A AGSGKT ++V R+  L+         +L +T T  A
Sbjct: 4   LHNLNPPQKEAVLHGEGPLLVLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++                   G+ P                       + 
Sbjct: 64  AGEMRERLAHMLG-----------------DGELPL----------------------IS 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I++         S+FAI D+   +KL+++      A + LD      KA   
Sbjct: 85  TFHSTCARILRSEIRHLGYDSNFAIYDDRDCEKLLKDCA----AELNLDEKRYPAKALAG 140

Query: 195 ILEISNDEDI 204
            L+   ++ +
Sbjct: 141 ALDEFKNQGL 150


>gi|255283739|ref|ZP_05348294.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
 gi|255265804|gb|EET59009.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
          Length = 594

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 39/160 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +  + ++           + A AGSGKT +L  RV  L+      P  +L +T T  AA 
Sbjct: 6   NLNEMQREAVLHTEGPLLILAGAGSGKTRVLTHRVAYLIEEKGVKPWNILAITFTNKAAG 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  +    +                                      G + V T 
Sbjct: 66  EMRERVDNLAGPEA--------------------------------------GSVWVSTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+ C  I+++F       ++F I D +  K L+++  K  
Sbjct: 88  HSLCVRILRRFIDRLGYENNFTIYDTDDQKSLMKDICKKL 127


>gi|323342307|ref|ZP_08082539.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463419|gb|EFY08613.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 1040

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 27/199 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAA 74
           + +    +Q       ++  VSA+AG+GKT +L+ R++ R++  N     +  +T T+AA
Sbjct: 1   MTTYNPQQQQAIEALNQNVIVSASAGAGKTTVLIARLMKRIIRDNVRIDEVCAMTFTEAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R+L  +                       N          +   +      ++ 
Sbjct: 61  ASEMKTRLLASL-----------------------NDEYRKHESDFIAEQISLVETAQIS 97

Query: 135 TIHAFCEAIMQQFPLEANITSHFA--IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           TIH+FC  I++ +     +    A  I D+ Q+K L  +A + T    + ++ E LK   
Sbjct: 98  TIHSFCLTIIKNYGYIIGVNPSRADNILDDAQTKLLQRQAMRKTFDQWLQNDYENLKYLL 157

Query: 193 YEILEISND-EDIETLISD 210
                   D + +E  I D
Sbjct: 158 DVFSTNPLDYKSLENAIYD 176


>gi|257061893|ref|YP_003139781.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802]
 gi|256592059|gb|ACV02946.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802]
          Length = 781

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           D ++Q  + Q  A +       V A AGSGKT  L  R+  L+      P ++L +T T 
Sbjct: 10  DFLAQLNTSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIAHLISYHQVEPESILAVTFTN 69

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGL 131
            AA EM  R+ ++                 K  G + +  +  + + LL  + + T   L
Sbjct: 70  KAAREMKERIEKLFAQEMAF----------KKHGIRFDLLNEYEQKQLLSKVYKSTTKKL 119

Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + T H+ C  I++    ++  E       +F+I DE  ++ L++      L   + D  
Sbjct: 120 WIGTFHSLCTRILRYDINKYQDERGRQWQRNFSIFDESDAQSLVKNIVTKQLN--LDDKK 177

Query: 186 EELKKAFYEILEISN 200
            + +   Y+I    N
Sbjct: 178 FDPRSVRYQISNAKN 192


>gi|25010945|ref|NP_735340.1| exonuclease RexA [Streptococcus agalactiae NEM316]
 gi|77413173|ref|ZP_00789372.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|81588835|sp|Q8E5T9|ADDA_STRA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|23095324|emb|CAD46535.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160791|gb|EAO71903.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1207

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I                    +    ++    +  L   L       + T+ AF
Sbjct: 89  ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            + I+ Q+     I+  F I  D+ +   +  E      +  M   N     +F +++  
Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            S +        +++      K+  F  S    ++ ++
Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 219


>gi|317476225|ref|ZP_07935476.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907636|gb|EFV29339.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 760

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 58/163 (35%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL  +  P  +L LT T  
Sbjct: 3   DYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                           + +ARHL            +
Sbjct: 63  AAREMKERIARQVG--------------------------VERARHL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+    ++   TS F I D   SK L+    K  
Sbjct: 86  GTFHSIFLRILHAEAVQIGFTSRFTIYDTADSKSLLRSIIKEM 128


>gi|116669378|ref|YP_830311.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
 gi|116609487|gb|ABK02211.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
          Length = 830

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 45/196 (22%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           E +  ++  + E +       +  + A AGSGKT +L  R+  L+    AH   +L +T 
Sbjct: 57  ELLQGLNPQQEEAVK--HTGGALLIVAGAGSGKTRVLSNRIAYLIATRRAHHGEILAITF 114

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  R+  ++   + +                                      
Sbjct: 115 TNKAAAEMRERIEALVGGRAKI-------------------------------------- 136

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + + T H+ C  I++Q      + S+F+I D   S +L+ +  KS    + LD  +   K
Sbjct: 137 MWISTFHSSCVRILRQEAANVGLKSNFSIYDSADSLRLVTQVSKS----LDLDPKKFAPK 192

Query: 191 AFYEILEISNDEDIET 206
           A    +    +E I+ 
Sbjct: 193 AIQHKISALKNELIDA 208


>gi|312863341|ref|ZP_07723579.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396]
 gi|311100877|gb|EFQ59082.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396]
          Length = 1217

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L ++        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +T                   ++  + +  + R  L   +   G   + T+ AF
Sbjct: 89  ERLEKRLT-------------------EQLGQVETDEERAFLSDQIAKIGTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196
            + ++ Q+     ++  F I  D  +   +  E         M   + +L +        
Sbjct: 130 TQKLVNQYGYLLGVSPIFRIMTDPAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
                     L+ DI           F  +     K + ++L 
Sbjct: 190 HSKTSTAFRDLVYDI---------YNFSQATAGPEKWLRQNLL 223


>gi|302390294|ref|YP_003826115.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM
           16646]
 gi|302200922|gb|ADL08492.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM
           16646]
          Length = 731

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 45/191 (23%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++ +S    EQ  A + P     + A AGSGKT +L  R+  L+      P +++ +T T
Sbjct: 1   MNYLSDLNEEQRKAVTHPGGPLLILAGAGSGKTRVLTYRIAYLIEKMGVDPGSIMAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +                                       +L    G+
Sbjct: 61  NKAAQEMKERIEK---------------------------------------LLPWARGM 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+ C  I++    +     +F I D +    LI +  K    ++ LD  +    A
Sbjct: 82  LVSTFHSACVRILRSDIDKLGYNKNFIIFDTQDQLVLIRDCIK----ALGLDEKKYAPTA 137

Query: 192 FYEILEISNDE 202
               +  + D 
Sbjct: 138 VLNYIGRAKDR 148


>gi|218248831|ref|YP_002374202.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801]
 gi|218169309|gb|ACK68046.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801]
          Length = 781

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           D ++Q  + Q  A +       V A AGSGKT  L  R+  L+      P ++L +T T 
Sbjct: 10  DFLAQLNTSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIAHLISYHQVEPESILAVTFTN 69

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGL 131
            AA EM  R+ ++                 K  G + +  +  + + LL  + + T   L
Sbjct: 70  KAAREMKERIEKLFAQEMAF----------KKHGIRFDLLNEYEQKQLLSKVYKSTTKKL 119

Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + T H+ C  I++    ++  E       +F+I DE  ++ L++      L   + D  
Sbjct: 120 WIGTFHSLCTRILRYDINKYQDERGRQWQRNFSIFDESDAQSLVKNIVTKQLN--LDDKK 177

Query: 186 EELKKAFYEILEISN 200
            + +   Y+I    N
Sbjct: 178 FDPRSVRYQISNAKN 192


>gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822066|gb|ABG97350.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 828

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 88/254 (34%), Gaps = 75/254 (29%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L +R+  LL      P  +L +T T  AAAEM
Sbjct: 35  NPQQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEM 94

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 95  RERVAHLVGPRA--------------------------------------NSMWVSTFHS 116

Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST------------------LAS 179
            C  I++ Q  L   + S+F+I D + S++L+    K                    L +
Sbjct: 117 SCVRILRAQAALLPGLNSNFSIYDADDSRRLLTMIAKDLNIDTKRYSARLLATHISNLKN 176

Query: 180 IMLDNNEELKKA-----------------FYEILEISNDEDIETLISDIISNRTALKLIF 222
            ++D ++    A                 + + L  +N  D + LI + ++   A   + 
Sbjct: 177 ELVDPDQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQVA 236

Query: 223 FFFSYLWRRKIIEK 236
            ++   +R  ++++
Sbjct: 237 EYYRRRFRHVLVDE 250


>gi|261315587|ref|ZP_05954784.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10]
 gi|261304613|gb|EEY08110.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10]
          Length = 580

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 6   QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 65

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++                                        
Sbjct: 66  AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 90

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 91  --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 144

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 145 WPARTFANMIDGWKNKGF 162


>gi|294621038|ref|ZP_06700230.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317]
 gi|291599352|gb|EFF30377.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317]
          Length = 326

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILASGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|116071601|ref|ZP_01468869.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107]
 gi|116065224|gb|EAU70982.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107]
          Length = 798

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 23/176 (13%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P  +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHQGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPGQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++         +  ++  +     P          +   I +    L
Sbjct: 61  NKAAREMKERLELLLA------QRLAQSQFGQPWSTLPPVEQRQLRSRIYREITK---EL 111

Query: 132 KVQTIHAFCEAIMQQFPLEAN--ITSH-------FAIADEEQSKKLIEEAKKSTLA 178
            + T HA    +++    + +             F+I DE  ++ L++E     L 
Sbjct: 112 WIGTFHALFARMLR---FDIDKFRDPDGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|258591574|emb|CBE67875.1| DNA helicase II [NC10 bacterium 'Dutch sediment']
          Length = 729

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 31/157 (19%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +            V A AGSGKT ++ +R+  L+      P  +L +T T  AA EM
Sbjct: 11  NPRQAEAVLHTQGPLLVLAGAGSGKTRVITRRIAYLIGHCGVAPWNILAVTFTNKAAGEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   +                                  L    G+ V T H+
Sbjct: 71  KRRVADLVGQHASEPG------------------------------LRDGSGVWVGTFHS 100

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C  I+++      I S F I DE     L+ +  ++
Sbjct: 101 TCVRILRKHGAALGIKSSFVIYDEGDQMSLMRDCLRA 137


>gi|320095653|ref|ZP_08027311.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977414|gb|EFW09099.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 525

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L  R+  LL    A    +L +T T  AAAEM
Sbjct: 33  NDRQRASVEHRGTPLLIMAGAGSGKTRVLTHRIAYLLATGQARAGQILAITFTNKAAAEM 92

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++                                       +  G + V T H+
Sbjct: 93  RERIAALVG--------------------------------------DEAGRMWVSTFHS 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C  I++     A ++  F I D + S++L++   K+
Sbjct: 115 ACVRILRYEHEAAGLSGSFTIYDAQDSQRLMQMVLKA 151


>gi|224418267|ref|ZP_03656273.1| putative recombination protein RecB [Helicobacter canadensis MIT
           98-5491]
          Length = 419

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 4/150 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             ++A+AGSGKT+ LV R L LL   A PS +L LT TK AA EM  R+++ I       
Sbjct: 6   LCLNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIVKSIQEIYQRK 65

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           ++    +  +       +    K   +    L     LK+ TI +F + I++ F     +
Sbjct: 66  NDREYIKKLEFISINDLEGIEQKITKIYYEFLR--EDLKITTIDSFFQRILKSFCWYVGV 123

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            ++F I +E+   ++I E     L+    +
Sbjct: 124 ENNFEIQNED--FEIITEIFLELLSDEAFE 151


>gi|297625889|ref|YP_003687652.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921654|emb|CBL56211.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 829

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 44/176 (25%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP 62
           H++  +    +  ++  + + ++         V A AGSGKT +L +R+  L+     HP
Sbjct: 35  HDAHDDAEALLHGLNPPQEQAVV--HEGSPVLVVAGAGSGKTRVLTRRIAWLIAQRGVHP 92

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            ++L +T T  AAAEM  RV E++   +                                
Sbjct: 93  GSILAITFTNKAAAEMRSRVAELVGPRTRT------------------------------ 122

Query: 123 TILETPGGLKVQTIHAFCEAIMQQ---FPLEANITSHFAIADEEQSKKLIEEAKKS 175
                   + V T H+ C  I++       E  +  +F+I D+  +K+L+    + 
Sbjct: 123 --------MWVSTFHSACVRILRTELAEAPELGLRRNFSIYDDTDTKRLMTLVLRD 170


>gi|291277552|ref|YP_003517324.1| putative DNA helicase [Helicobacter mustelae 12198]
 gi|290964746|emb|CBG40601.1| putative DNA helicase [Helicobacter mustelae 12198]
          Length = 898

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 10/155 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            R   + A+AGSGKT  L  R L LL A A+   +L LT TK AA EM  R+ + +   +
Sbjct: 3   ERFLTLMASAGSGKTFALTLRYLSLLFAGANAGEILALTFTKKAAGEMRERISDALEELA 62

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            + +      +    G    +  +  A+ +    L     +K+ T+ +F  +++++F   
Sbjct: 63  SVGESKYLQNLITDYGFSK-EEILGNAKRVFGHFL--ASNIKITTLDSFFNSVVRKFCWN 119

Query: 151 ANITSHFAIADEEQSK-------KLIEEAKKSTLA 178
             ++ +F I  +E+S         L +E  +  L 
Sbjct: 120 VGLSKNFTIKAQEESSICIMFLNSLTQEEYRDLLD 154


>gi|317124193|ref|YP_004098305.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043]
 gi|315588281|gb|ADU47578.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043]
          Length = 854

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            ++ ++  + E ++         + A AGSGKT +L  R+  LL    A P  +L +T T
Sbjct: 79  LLEGLNPHQREAVV--HEGGPLLIVAGAGSGKTRVLTHRIAWLLGKRGAQPGQILAITFT 136

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++                             +AR            +
Sbjct: 137 NKAAAEMRERVEALVG---------------------------PRARS-----------M 158

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +  + S F+I D   S +L+    +  
Sbjct: 159 WVMTFHSACVRILRREAAKVGMKSTFSIYDAADSLRLMSLVIRDL 203


>gi|296135521|ref|YP_003642763.1| UvrD/REP helicase [Thiomonas intermedia K12]
 gi|295795643|gb|ADG30433.1| UvrD/REP helicase [Thiomonas intermedia K12]
          Length = 781

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 44/192 (22%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           LI Q   EQ  A   P  +A + A AGSGKT +L  R+  L+      P+ +L +T T  
Sbjct: 4   LIQQLNPEQHAAVTLPAENALILAGAGSGKTRVLTTRIAWLISTGQVTPAGILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                                           G+ +
Sbjct: 64  AAKEMMARLSAQLPIPVR--------------------------------------GMWI 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C   ++    EA +   F I D +        + K  L S+ +D+     K   
Sbjct: 86  GTFHGLCNRFLRAHWREAGLPQTFQILDIQDQLA----SIKRLLKSLNVDDERHPPKQVQ 141

Query: 194 EILEISNDEDIE 205
             +  + D+ + 
Sbjct: 142 WFINGAKDQGLR 153


>gi|238019225|ref|ZP_04599651.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748]
 gi|237863924|gb|EEP65214.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748]
          Length = 729

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L    K +Q           + A AGSGKT +L  R+  LL    +P  +L +T T  AA
Sbjct: 5   LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV  ++   +                                        + + T
Sbjct: 65  KEMKSRVEGLVGDVA--------------------------------------NRIWLST 86

Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+FC   ++ +        S+F I D   S+ +I+ A K+ 
Sbjct: 87  FHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIKAALKAL 128


>gi|254418189|ref|ZP_05031913.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
 gi|196184366|gb|EDX79342.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
          Length = 785

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 44/194 (22%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           + ++ ++  + E + A++      V A AG+GKT +L  R+  +L    A P  LL +T 
Sbjct: 25  DYLEGLNPEQREAVEATE--GPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVTF 82

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  +I                      P+   +                
Sbjct: 83  TNKAAREMRERITHLIG---------------------PSAEGLR--------------- 106

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T H+    I+++      + S F I D +  ++++++     L +  +D      K
Sbjct: 107 -WLGTFHSIAAQILRRHAELVGLKSSFTILDTDDQERVLKQ----LLEAANIDTKRWTPK 161

Query: 191 AFYEILEISNDEDI 204
           +   +++   +   
Sbjct: 162 SLSGLIDHWKNRGW 175


>gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551]
 gi|31792138|ref|NP_854631.1| ATP dependent DNA helicase UVRD1 [Mycobacterium bovis AF2122/97]
 gi|57116803|ref|YP_177772.1| ATP-dependent DNA helicase II UVRD1 [Mycobacterium tuberculosis
           H37Rv]
 gi|121636874|ref|YP_977097.1| putative ATP dependent DNA helicase uvrD1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148660728|ref|YP_001282251.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148822158|ref|YP_001286912.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           F11]
 gi|167967811|ref|ZP_02550088.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           H37Ra]
 gi|224989345|ref|YP_002644032.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800024|ref|YP_003033025.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231256|ref|ZP_04924583.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C]
 gi|289555271|ref|ZP_06444481.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           605]
 gi|294996434|ref|ZP_06802125.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis 210]
 gi|297633471|ref|ZP_06951251.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           4207]
 gi|297730456|ref|ZP_06959574.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           R506]
 gi|306775079|ref|ZP_07413416.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu001]
 gi|306782007|ref|ZP_07420344.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu002]
 gi|306783628|ref|ZP_07421950.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu003]
 gi|306787992|ref|ZP_07426314.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu004]
 gi|306792329|ref|ZP_07430631.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu005]
 gi|306796727|ref|ZP_07435029.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu006]
 gi|306802615|ref|ZP_07439283.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu008]
 gi|306806794|ref|ZP_07443462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu007]
 gi|306966993|ref|ZP_07479654.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu009]
 gi|306971186|ref|ZP_07483847.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu010]
 gi|307078913|ref|ZP_07488083.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083471|ref|ZP_07492584.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu012]
 gi|313657784|ref|ZP_07814664.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           V2475]
 gi|61229774|sp|P0A5A3|PCRA_MYCTU RecName: Full=ATP-dependent DNA helicase pcrA
 gi|61229776|sp|P0A5A4|PCRA_MYCBO RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13880539|gb|AAK45224.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551]
 gi|31617726|emb|CAD93835.1| PROBABLE ATP DEPENDENT DNA HELICASE UVRD1 [Mycobacterium bovis
           AF2122/97]
 gi|41353625|emb|CAE55341.1| PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 [Mycobacterium
           tuberculosis H37Rv]
 gi|121492521|emb|CAL70989.1| Probable ATP dependent dna helicase uvrD1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600315|gb|EAY59325.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C]
 gi|148504880|gb|ABQ72689.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720685|gb|ABR05310.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           F11]
 gi|224772458|dbj|BAH25264.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321527|gb|ACT26130.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           1435]
 gi|289439903|gb|EFD22396.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           605]
 gi|308216426|gb|EFO75825.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu001]
 gi|308325244|gb|EFP14095.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331626|gb|EFP20477.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu003]
 gi|308335437|gb|EFP24288.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339243|gb|EFP28094.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342888|gb|EFP31739.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346806|gb|EFP35657.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350722|gb|EFP39573.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu008]
 gi|308355383|gb|EFP44234.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu009]
 gi|308359322|gb|EFP48173.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu010]
 gi|308363229|gb|EFP52080.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366886|gb|EFP55737.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720660|gb|EGB29738.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459767|gb|AEB05190.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           4207]
          Length = 771

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             KAR+           
Sbjct: 76  TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
           33030]
 gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
           33030]
          Length = 764

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL      +Q  A + T S   + A AGSGKT +L +R+  LL      P  +L +T T 
Sbjct: 4   DLTLGLNPQQKAAVEHTGSPLLIVAGAGSGKTAVLTRRIAYLLQERGVAPWEILAITFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV  +I   +                                        + 
Sbjct: 64  KAAAEMKERVGALIGPQAE--------------------------------------RMW 85

Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I++Q       + ++F I D + S++L+    K  
Sbjct: 86  VATFHSVCVRILRQQAQLVPGLNTNFTIYDGDDSRRLLGMIAKEM 130


>gi|186681485|ref|YP_001864681.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102]
 gi|186463937|gb|ACC79738.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102]
          Length = 773

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 22/201 (10%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           TID +S     Q  A +       V A AGSGKT  L  R+  L+L +   P  +L +T 
Sbjct: 4   TIDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVDPENILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  +      +       ++     +   +S + K+         T   
Sbjct: 64  TNKAAREMKERIQRLFAEQLAMKQHGQRLDLLTEYQQTQLRSQVYKS---------TIKD 114

Query: 131 LKVQTIHAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKSTLASIMLD 183
           L   T H+    I++ F +E  +         +F+I DE     LI+E        + LD
Sbjct: 115 LWCGTFHSLFSRILR-FDIEKYVDEKGRKWNRNFSIFDESDVMTLIKELVN---KELNLD 170

Query: 184 NNEELKKAFYEILEISNDEDI 204
           + +   ++    +  + ++ +
Sbjct: 171 DKKFDARSVRYAISNAKNQGL 191


>gi|83858903|ref|ZP_00952425.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633]
 gi|83853726|gb|EAP91578.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633]
          Length = 766

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 44/191 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  +   + A D   +  V A AG+GKT +L  R+  +L    A P  +L +T T
Sbjct: 21  YLDGLNPEQRAAVEAVD--GAVLVLAGAGTGKTRVLTTRLAHILATGKAQPWNILAVTFT 78

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +II                                             
Sbjct: 79  NKAAREMKERVGKIIGEQVEGLP------------------------------------- 101

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+    I+++      + S F I D +   +L+++     L +  +D      + 
Sbjct: 102 WLGTFHSIAAQILRRHAELVGLKSTFTILDTDDQLRLLKQ----ILEAEGIDTKRWTPRH 157

Query: 192 FYEILEISNDE 202
              +++   + 
Sbjct: 158 LASLIDGWKNR 168


>gi|228963385|ref|ZP_04124546.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796279|gb|EEM43726.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 168

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|269798061|ref|YP_003311961.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008]
 gi|282850288|ref|ZP_06259667.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745]
 gi|269094690|gb|ACZ24681.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008]
 gi|282579781|gb|EFB85185.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745]
          Length = 729

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L    K +Q           + A AGSGKT +L  R+  LL    +P  +L +T T  AA
Sbjct: 5   LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV  ++   +                                        + + T
Sbjct: 65  KEMKSRVEGLVGDVA--------------------------------------NRIWLST 86

Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+FC   ++ +        S+F I D   S+ +I+ A K+ 
Sbjct: 87  FHSFCAKFLRFEIDSFLGYNSNFTIYDTSDSQAVIKAALKAL 128


>gi|154495304|ref|ZP_02034309.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC
           43184]
 gi|154085228|gb|EDN84273.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC
           43184]
          Length = 770

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E +  +++++ E ++ +D    + V A AGSGKT +L  ++  LL     P ++L LT T
Sbjct: 3   EYLKQLNESQREAVVYTD--GPSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+       + L+DE +                                 L
Sbjct: 61  NKAAREMKDRI-------ASLTDERMVR------------------------------RL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D   SK L+    K  
Sbjct: 84  WMGTFHSVFSRILRSEAECIGYPSNFTIYDATDSKSLLRSIMKEM 128


>gi|124024248|ref|YP_001018555.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123964534|gb|ABM79290.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303]
          Length = 802

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 24/216 (11%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P+ +L +T T
Sbjct: 1   MSFLAGLNDAQRKAVDHHQGPLLVVAGAGSGKTRALTHRIAHLIGAHGADPAQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130
             AA EM  R+  ++      S            G+  +       R L   I  E    
Sbjct: 61  NKAAREMKDRLELLLAQRLAESQY----------GQPWSTLPPVDQRQLRGRIFREVTKE 110

Query: 131 LKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           L + T H+    +++    +F     ++    F+I DE  ++ L++E     L    LD 
Sbjct: 111 LWIGTFHSLFARLLRFDIDKFRDAEGLSWTRQFSIYDEADAQSLVKEIVTQELQ---LDP 167

Query: 185 NEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218
                K     +  + ++    + L + +   R  L
Sbjct: 168 KRFEPKKVRWAISNAKNQGWLPDQLAAQVDGQRGKL 203


>gi|332169838|gb|AEE19093.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1046

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 13/209 (6%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLE 84
           ++      ++A+AGSGKT+ LV++ +  LL +   +    LL +T T  A AEM +RVL+
Sbjct: 2   TETNTFIVLNASAGSGKTYSLVKQYITTLLKSNDANKFRHLLAITFTNKAVAEMKNRVLD 61

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCE 141
            +    H        ++          S+   + KA+ +L  IL       + TI     
Sbjct: 62  TLKNIGHYEPGNKKPDMIDDLVSSSGLSEDVVIKKAKEILNRILHNYAAFDIVTIDTLTH 121

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I++ F  + NI+S F +      K L  +A  + +A + +D+        + + +  +D
Sbjct: 122 RIIRTFAKDLNISSSFEV--SLDQKTLNAQAVDALIAKVGIDDEITKVLINFALEKADDD 179

Query: 202 EDIETL-----ISDIISNRTALKLIFFFF 225
           +  +       I++++ N   LK +    
Sbjct: 180 KSWDVARDLLEIANLLHNENDLKALELIK 208


>gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552915|gb|EGD22598.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
          Length = 824

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 54/219 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  + E +L +       + A AGSGKT +L +R+  LL      P  +L +T T
Sbjct: 30  LLEGLNPQQREAVLHA--GSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFT 87

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV +++   +                                        +
Sbjct: 88  NKAAAEMRERVAQLVGPRA--------------------------------------NSM 109

Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI-----------EEAKKSTLAS 179
            V T H+ C  I++ Q  L   + S+F+I D + S++L+           +      LA+
Sbjct: 110 WVSTFHSSCVRILRAQAGLLHGLNSNFSIYDADDSRRLLTMISKDLEIDTKRYSARLLAT 169

Query: 180 IMLDNNEELKKAFYEILEISND-EDIETLISDIISNRTA 217
            + +   EL        +   D  D++ L++ + ++   
Sbjct: 170 KISNLKNELIDPEEAAADADRDSNDLDKLVARVYAHYQQ 208


>gi|225620088|ref|YP_002721345.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
 gi|225214907|gb|ACN83641.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
          Length = 665

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 39/167 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++             A AGSGKT ++ +R+  L+     PS +L +T T  AAAEM 
Sbjct: 6   NEEQRQAVEHIDGPLLALAGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAAAEMR 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +++                                       E P  L V T H+F
Sbjct: 66  ERITKLLK--------------------------------------EKPKQLVVSTFHSF 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185
           C  +++    +    ++F+I     S+ LI    +   + ++  D N
Sbjct: 88  CVRVLKGDIEKLGYKNNFSIYSSSDSRTLIRNILREIKINTLNYDEN 134


>gi|294793798|ref|ZP_06758935.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44]
 gi|294455368|gb|EFG23740.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44]
          Length = 729

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L    K +Q           + A AGSGKT +L  R+  LL    +P  +L +T T  AA
Sbjct: 5   LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV  ++   +                                        + + T
Sbjct: 65  KEMKSRVEGLVGDVAT--------------------------------------RIWLST 86

Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+FC   ++ +        S+F I D   S+ +I+ A K+ 
Sbjct: 87  FHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIKAALKAL 128


>gi|182415966|ref|YP_001821032.1| UvrD/REP helicase [Opitutus terrae PB90-1]
 gi|177843180|gb|ACB77432.1| UvrD/REP helicase [Opitutus terrae PB90-1]
          Length = 668

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           E    ID  +Q   EQ  A         V A AGSGKT  L  RV  LL     P  +L 
Sbjct: 11  EQIPPIDFRAQLNDEQFAAVTAEPGPLLVLAGAGSGKTRTLTYRVAYLLSRGVKPGEILL 70

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  AA EM HRV ++                                          
Sbjct: 71  LTFTNKAAKEMLHRVQDLTGIE-------------------------------------- 92

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           P      T H+     ++ +     +  +F I D ++S+ L+++A +        D    
Sbjct: 93  PQRFWGGTFHSLGHRALRIYGDAIGLPKNFTILDADESESLLKQAVEHEDKLFFKDKTNP 152

Query: 188 LKKAFYEILEISND 201
                +++L ++ +
Sbjct: 153 RPGPLFDVLSLARN 166


>gi|224024112|ref|ZP_03642478.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM
           18228]
 gi|224017334|gb|EEF75346.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM
           18228]
          Length = 793

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 39/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            +  +D +++ +   +L +D    + V A AGSGKT +L  ++  LL     P ++L LT
Sbjct: 1   MANYLDELNEGQRAAVLYND--GPSLVIAGAGSGKTRVLTYKIAYLLDQGYKPWSILALT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+   +                                           
Sbjct: 59  FTNKAAREMKERIARQVGE-------------------------------------NLAR 81

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            L + T H+    I++        +S+F I D   SK L++   +  
Sbjct: 82  YLWMGTFHSIFSRILRAEADAIGFSSNFTIYDASDSKSLVKSIIREM 128


>gi|162449161|ref|YP_001611528.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159743|emb|CAN91048.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 820

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 41/199 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + +   AS       + A AGSGKT ++V R+  L++ +   P  +L +T T  AA EM
Sbjct: 25  NEPQARAASHAAGPLLIFAGAGSGKTRVIVYRIANLIVTHRVPPYRILAVTFTNKAATEM 84

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +I                                            L V T HA
Sbjct: 85  KRRLEGLIGPDIVKD-------------------------------------LWVGTFHA 107

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYEILE 197
            C  ++++    A +  +F I D++  + ++    K   L        + L +   E  E
Sbjct: 108 VCARLLRRHHEAAGLDKNFIIYDDDDQRAVMNRVLKELNLDDRRYPPRQVLSRIHAEKQE 167

Query: 198 ISNDEDIET--LISDIISN 214
                + E      D I+ 
Sbjct: 168 GRGPAEFERKGYFDDAIAR 186


>gi|29830006|ref|NP_824640.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607116|dbj|BAC71175.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 861

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L    ++++           + A AGSGKT +L  R+  LL   + HP  +L +T T  A
Sbjct: 70  LHGLNENQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLGERHVHPGQILAITFTNKA 129

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++   +                                        + V 
Sbjct: 130 AGEMKERVEQLVGPRA--------------------------------------NAMWVM 151

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C  I+++       TS F+I D   SK+L+    +  
Sbjct: 152 TFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 193


>gi|258514071|ref|YP_003190293.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777776|gb|ACV61670.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM
           771]
          Length = 737

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           E +  ++  ++E +   D      + A AGSGKT +L  R+  LLL     P  +L +T 
Sbjct: 12  EILAGLNPVQAEAVRHVD--GPLLILAGAGSGKTRVLTHRIAHLLLSEKVSPFNILAITF 69

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  I+   +                                        
Sbjct: 70  TNKAALEMRERVAAILPGVAR--------------------------------------D 91

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L V T H+ C  I+++          F++ DE     LI++  K  
Sbjct: 92  LWVATFHSTCLKILRRDGQLLGYGQDFSVYDEGDRHTLIKDCIKEL 137


>gi|308172547|ref|YP_003919252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307605411|emb|CBI41782.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328552312|gb|AEB22804.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens TA208]
 gi|328910656|gb|AEB62252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens LL3]
          Length = 739

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 45/197 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            ++ +  ++  + E +  +D      + A AGSGKT +L  R+  L+   +  P  +L +
Sbjct: 5   SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 63  TFTNKAAREMKERVESILGPGA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             + + T H+ C  I+++      I  +F+I D      +I    K  L    +D  +  
Sbjct: 85  DEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVI----KGILKERNIDPKKFD 140

Query: 189 KKAFYEILEISNDEDIE 205
            ++    +  + +E IE
Sbjct: 141 PRSILGSISSAKNELIE 157


>gi|218283946|ref|ZP_03489814.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989]
 gi|218215525|gb|EEC89063.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989]
          Length = 1036

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 31/194 (15%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81
           ++        +  VSA+AGSGKT +LV+R+ +L+L  +    ++L +T TK AAAEM  R
Sbjct: 7   QKKAIDIRNTNVVVSASAGSGKTAVLVERLCQLVLKDHISIDSILAMTFTKDAAAEMKAR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +L  +                    ++P    + +   LL T         + TI +FC 
Sbjct: 67  LLSKLK-------------------EQPKTDYILQQMALLETA-------SISTIDSFCL 100

Query: 142 AIMQQFPLEANITSHFA--IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           +I+Q +  +  I+   +   A   Q++   E A K  +  + L+   +LK  F+      
Sbjct: 101 SIVQNYYYKIPISYTMSKQTASSAQTRIAFENAYKHAIQDLDLNAYTQLKMYFHSF--GK 158

Query: 200 NDEDIETLISDIIS 213
            +EDI+  I DI++
Sbjct: 159 TEEDIQKYIEDILA 172


>gi|312114573|ref|YP_004012169.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219702|gb|ADP71070.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100]
          Length = 793

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
            +    +EQ  A +       V A AG+GKT +L  R+  LL    A P+ +L +T T  
Sbjct: 33  YLQGLNAEQREAVERLDGPVLVLAGAGTGKTRVLTTRMAHLLWTHRARPNEILAVTFTNK 92

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++                                          G   +
Sbjct: 93  AAREMKERVGKLVGGAVE-------------------------------------GMPWL 115

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I+++      ++ +F I D +   +LI++     + +  LD+     +   
Sbjct: 116 GTFHSIGMRILRRHAELVGLSQNFTILDVDDQIRLIKQ----IIQAERLDDKRWPARQLA 171

Query: 194 EILEISNDEDI 204
            +++   ++ +
Sbjct: 172 GLIDGWKNKGL 182


>gi|315221764|ref|ZP_07863678.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211]
 gi|315189150|gb|EFU22851.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211]
          Length = 1237

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L       L   T T  AA+E+ 
Sbjct: 40  TPEQIEAIYSSGQNILVSASAGSGKTFVMVQRIVDQILRGVRIDQLFISTFTVKAASELK 99

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + ++     +D+                    + +  L   L       + T+ +F
Sbjct: 100 ERLEKELSKALKATDD-------------------EELKQHLAQQLADIPNADIGTMDSF 140

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E  +         +   L   F ++++ 
Sbjct: 141 TQKVLNKYGYLLELAPNFRILQSASEQLLLQNEVFEQVFEEFYQSDQAAL---FKKLVKN 197

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D++  R  + K+  F  S       + K   
Sbjct: 198 FTGQR-----KDLLGFREQVYKIYAFLQSTSSPIAWLGKDFL 234


>gi|254304235|ref|ZP_04971593.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148324427|gb|EDK89677.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 737

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 41/166 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           +   ++ ++  + E   AS    S  + A AGSGKT  +  R+  ++      P ++L +
Sbjct: 2   NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAV 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  ++   +                                      
Sbjct: 60  TFTNKAAKEMRERVEGLVGDIAKAC----------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               + T H+F   +++ +  E     +F I D +  K++++   K
Sbjct: 85  ---TISTFHSFGMRLLRMYASEVGYNPNFTIYDTDDQKRIVKAILK 127


>gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311887919|emb|CBH47231.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 824

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 54/219 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  + E +L +       + A AGSGKT +L +R+  LL      P  +L +T T
Sbjct: 30  LLEGLNPQQREAVLHA--GSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFT 87

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV +++   +                                        +
Sbjct: 88  NKAAAEMRERVAQLVGPRA--------------------------------------NSM 109

Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI-----------EEAKKSTLAS 179
            V T H+ C  I++ Q  L   + S+F+I D + S++L+           +      LA+
Sbjct: 110 WVSTFHSSCVRILRAQAGLLHGLNSNFSIYDADDSRRLLTMISKDLEIDTKRYSARLLAT 169

Query: 180 IMLDNNEELKKAFYEILEISND-EDIETLISDIISNRTA 217
            + +   EL        +   D  D++ L++ + ++   
Sbjct: 170 KISNLKNELIDPEEAAADADRDSNDLDKLVARVYAHYQQ 208


>gi|154685156|ref|YP_001420317.1| PcrA [Bacillus amyloliquefaciens FZB42]
 gi|154351007|gb|ABS73086.1| PcrA [Bacillus amyloliquefaciens FZB42]
          Length = 739

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 45/197 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            ++ +  ++  + E +  +D      + A AGSGKT +L  R+  L+   +  P  +L +
Sbjct: 5   SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 63  TFTNKAAREMKERVESILGPGA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             + + T H+ C  I+++      I  +F+I D      +I    K  L    +D  +  
Sbjct: 85  DEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVI----KGILKERNIDPKKFD 140

Query: 189 KKAFYEILEISNDEDIE 205
            ++    +  + +E IE
Sbjct: 141 PRSILGSISSAKNELIE 157


>gi|289753005|ref|ZP_06512383.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054]
 gi|289693592|gb|EFD61021.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054]
          Length = 650

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             KAR+           
Sbjct: 76  TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|306822880|ref|ZP_07456256.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC
           27679]
 gi|304553512|gb|EFM41423.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC
           27679]
          Length = 885

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 39/156 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI     +Q  A     ++  + A AGSGKT +L +R+  LL      S +L +T T  A
Sbjct: 23  LIKDLNPQQSEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKA 82

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+  ++   +                                        + + 
Sbjct: 83  AAEMRERLAALVGPEAE--------------------------------------RMWIS 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H+ C  I+++   +  + S F+I D   S++LI+
Sbjct: 105 TFHSACVRILRRDGDQIGLKSGFSIYDTADSERLIK 140


>gi|225870333|ref|YP_002746280.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp. equi
           4047]
 gi|225699737|emb|CAW93495.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi
           subsp. equi 4047]
          Length = 1213

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 30/236 (12%)

Query: 7   FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            Q+     D   +  ++Q+ A     ++  VSA+AGSGKT ++V+R+L  +L       L
Sbjct: 16  LQQEEALSDKTHKRTAQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGIPVDCL 75

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T T  AA E+  R+ + +      + +                    + +  L   L
Sbjct: 76  FISTFTVKAATELIERIEKKLHTAIAETQDY-------------------QLKAYLNDQL 116

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184
           +      + T+ AF + ++ Q      I+ HF I  D+ +   L  E  +      M   
Sbjct: 117 QALSQADIGTMDAFAQKLVHQHGYVLGISPHFRIIQDKAEQDILKREVFRQVFEDYMSQT 176

Query: 185 NEELKKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           +    KAF +++   S      +   +I+ +     +  F  S       + +   
Sbjct: 177 D---NKAFIQLVQNFSGRRKDSSAFREIVDS-----IYAFSQSTANPSSWLAEVFL 224


>gi|167039196|ref|YP_001662181.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514]
 gi|300913209|ref|ZP_07130526.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561]
 gi|307723777|ref|YP_003903528.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513]
 gi|166853436|gb|ABY91845.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514]
 gi|300889894|gb|EFK85039.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561]
 gi|307580838|gb|ADN54237.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513]
          Length = 711

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +    ++           + A AGSGKT +L  R+  L+      PS +L +T T  A
Sbjct: 5   LNNLNDKQKEAVMTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++                                          G L V 
Sbjct: 65  AEEMKTRVEDLLGYI---------------------------------------GDLWVS 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C  I+++   +     +F I D    K LI+E  K  
Sbjct: 86  TFHSACVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127


>gi|227892257|ref|ZP_04010062.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227865898|gb|EEJ73319.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 747

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 45/193 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +  ++  +SE +L ++      + A AGSGKT +L  RV  L+     +P  +L +T T 
Sbjct: 10  LSGMNDKQSEAVLCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTN 67

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 68  KAAREMRERVNNLMGEGAE--------------------------------------DIW 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T HA C  I+++   +      F IA   + + L+++     L  + +D  +   +A 
Sbjct: 90  VSTFHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQ----VLNDLNIDTKKYDPRAI 145

Query: 193 YEILEISNDEDIE 205
             ++  + ++ ++
Sbjct: 146 LSVISNAKNDLLD 158


>gi|188587404|ref|YP_001918949.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352091|gb|ACB86361.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 754

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 39/198 (19%)

Query: 5   NSFQEHSET-IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           N  Q  S+  I+   +   +QL A         + A AG+GKT  LV RV  LL +   P
Sbjct: 102 NISQSASDFKINYPEELNPQQLEAVTYCNGPLLIIAGAGTGKTRTLVYRVSYLLESGIPP 161

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L LT T+ AA EM  RV +++                                    
Sbjct: 162 QEILLLTFTRKAAREMLERVKKLLGT---------------------------------- 187

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
              E+   +K  T H+F   +++++     ++  F++ D+  S+ +++  +         
Sbjct: 188 ---ESTDRIKGGTFHSFANNVLRRYSGLVGLSPDFSVLDQIDSQDVVDLLRTEYDFHRQE 244

Query: 183 DNNEELKKAFYEILEISN 200
               + ++ F  I +  N
Sbjct: 245 KAFPKKERIFEIISKSRN 262


>gi|25027486|ref|NP_737540.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492768|dbj|BAC17740.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 825

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 41/184 (22%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           +L +    +Q  A +   S   + A AGSGKT +L +R+  L+     HP  +L +T T 
Sbjct: 43  ELTAGLNEQQKAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 102

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV +++   +                                        + 
Sbjct: 103 KAAAEMRERVADLVGPVAQ--------------------------------------RMW 124

Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V T H+ C  I++Q       + ++F I D + S++L+    K     I   +   L  A
Sbjct: 125 VATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLLTMIAKDLELDIKKFSARTLSSA 184

Query: 192 FYEI 195
              +
Sbjct: 185 ISNL 188


>gi|259507108|ref|ZP_05750008.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
 gi|259165386|gb|EEW49940.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
          Length = 824

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 41/184 (22%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           +L +    +Q  A +   S   + A AGSGKT +L +R+  L+     HP  +L +T T 
Sbjct: 42  ELTAGLNEQQKAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 101

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV +++   +                                        + 
Sbjct: 102 KAAAEMRERVADLVGPVAQ--------------------------------------RMW 123

Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V T H+ C  I++Q       + ++F I D + S++L+    K     I   +   L  A
Sbjct: 124 VATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLLTMIAKDLELDIKKFSARTLSSA 183

Query: 192 FYEI 195
              +
Sbjct: 184 ISNL 187


>gi|78484473|ref|YP_390398.1| DNA-dependent helicase II [Thiomicrospira crunogena XCL-2]
 gi|78362759|gb|ABB40724.1| ATP-dependent DNA helicase UvrD [Thiomicrospira crunogena XCL-2]
          Length = 741

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  ++ ++  + + +   D  + A + A AGSGKT +LV R+  L  +       +L 
Sbjct: 2   DISHILNDLNDAQRDAVTVED--QHALILAGAGSGKTRVLVHRIAWLTQVMGFSAYNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA+EM  RV  +I                                         
Sbjct: 60  VTFTNKAASEMRARVEALIG--------------------------------------NQ 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++    E  +   F I D +  K++I    K  L ++ LD+ + 
Sbjct: 82  SQGMTMGTFHGIAYRLLRTHYKEVGLPQSFQILDSDDQKRVI----KRLLKALELDDAQW 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    +E 
Sbjct: 138 PHKQVQAFINGEKEEG 153


>gi|309777085|ref|ZP_07672051.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915155|gb|EFP60929.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 715

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D +++ + E +   D      + A AGSGKT ++  R+  L+     +P+ +L +T T 
Sbjct: 4   LDQLNEHQLEAVQCVD--HHLRIIAGAGSGKTRVVTTRIAYLINNCGVYPNKVLAITFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 62  KAAREMKERVEALLGDVAK--------------------------------------AVT 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + TIH+FC  ++++  LE     +F I D +  K ++ +A K  
Sbjct: 84  ISTIHSFCVRLLREDILELGYPRNFTILDSDDQKSILRDAYKQM 127


>gi|317127162|ref|YP_004093444.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM
           2522]
 gi|315472110|gb|ADU28713.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM
           2522]
          Length = 760

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 42/166 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + +D +++ + E +   D      + A AGSGKT +L  R+  L+      P ++L +T 
Sbjct: 7   QLLDGLNKEQGEAVKHGD--GPLLIMAGAGSGKTRVLTHRIAYLIGEKGVPPWSILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV                                         I  T   
Sbjct: 65  TNKAAREMKERV---------------------------------------ARIASTAEE 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + + T H+ C  I+++       + +F I D      +I+   K  
Sbjct: 86  IWISTFHSMCVRILRRDIDRIGTSRNFTILDSGDQLTVIKRILKEL 131


>gi|189466065|ref|ZP_03014850.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM
           17393]
 gi|189434329|gb|EDV03314.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM
           17393]
          Length = 784

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + I +    Q  A       + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 4   NYIEELNEGQRAAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                             +ARHL            +
Sbjct: 64  AAREMKERIARQVGD--------------------------QRARHL-----------WM 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+    +    TS F I D   SK L+    K  
Sbjct: 87  GTFHSIFLRILHVEAVNIGFTSQFTIYDTADSKSLMRSIIKEM 129


>gi|171912708|ref|ZP_02928178.1| UvrD/REP helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 672

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 39/161 (24%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  ++   +Q  A + P   + V A AGSGKT +L  RV  LL     P  +L +T T 
Sbjct: 16  IDYRAELNEQQFAAVTAPAGQSLVIAGAGSGKTRVLTYRVAYLLDNGIAPENILLVTFTN 75

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+ EM  RV  ++   +                                        L 
Sbjct: 76  KASREMLDRVQNLLPIET--------------------------------------NRLW 97

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
             T H+    ++++      +   F+I D E  K L+E   
Sbjct: 98  GGTFHSIGNRLLRKHGDRLGLRQGFSIMDREDQKDLMETVV 138


>gi|158426099|ref|YP_001527391.1| DNA helicase II [Azorhizobium caulinodans ORS 571]
 gi|158332988|dbj|BAF90473.1| DNA helicase II [Azorhizobium caulinodans ORS 571]
          Length = 835

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
              +D ++  + E +   D      V A AG+GKT +L  R+  +L    A+PS +L +T
Sbjct: 66  PSYLDGLNPEQREAVETLD--GPVLVLAGAGTGKTRVLTTRIAHILSQGRAYPSQILAVT 123

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++                                          G
Sbjct: 124 FTNKAAREMKERIHAMVGDTVE-------------------------------------G 146

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+    I+++      + S F I D +   +L+++     +A+  +D      
Sbjct: 147 MPWLGTFHSIGVRILRRHHELVGLKSGFTILDTDDQLRLLKQ----LIAAEEIDEKRWPA 202

Query: 190 KAFYEILEISNDEDI 204
           +     ++   +  +
Sbjct: 203 RMLASAIDGWKNRGL 217


>gi|296130376|ref|YP_003637626.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109]
 gi|296022191|gb|ADG75427.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109]
          Length = 858

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 45/194 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++    ++           + A AGSGKT +L  R+  LL  + A    +L +T T
Sbjct: 75  LLDGLN--PQQRAAVLHAGGPLLIVAGAGSGKTRVLTHRIAHLLATHRARAGEILAITFT 132

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV +++   +                                        +
Sbjct: 133 NKAAAEMRERVEQLVGPSAQ--------------------------------------RM 154

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+ C  I+++      + + F+I D+  S++L+    +     + LD      KA
Sbjct: 155 WVSTFHSACVRILRREAATLGLRTSFSIYDQADSQRLLTLVAR----ELELDPKRYPAKA 210

Query: 192 FYEILEISNDEDIE 205
               +    DE ++
Sbjct: 211 LGHKISALKDELVD 224


>gi|119025711|ref|YP_909556.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765295|dbj|BAF39474.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
           15703]
          Length = 879

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 40/164 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            I+ ++  + E +      ++  + A AGSGKT +L +R+  LL      S++L +T T 
Sbjct: 11  LIEGLNPQQEEAVKYY--GQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R++ ++   +                                        + 
Sbjct: 69  KAAAEMRERLVTLVGPEAEH--------------------------------------MW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   E  + S F+I D   S++L++      
Sbjct: 91  ISTFHSACVRILRRDGKEIGLKSGFSIYDTADSERLVKLIAADL 134


>gi|261415584|ref|YP_003249267.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372040|gb|ACX74785.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326087|gb|ADL25288.1| exodeoxyribonuclease V, beta subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 1266

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 15/173 (8%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           DP++S ++ A+AG+GKT+ +   V +L+        +L +T+T+ AA E+  R+ + I  
Sbjct: 10  DPSQSLFIEASAGTGKTYTIQLMVSKLIKLGTPLKKILIVTYTEKAAGELKDRIRKKI-- 67

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQF 147
                DE+L     KI     ++  +S A+  L     +      + TIH+FC+  +++F
Sbjct: 68  -----DEVLINR--KIDKSDDSEEPLSDAKIALFTKAYQDVDNAAIFTIHSFCQKALKEF 120

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +A    + ++ D+++   LIE+  +   +      +EE K       + S+
Sbjct: 121 AYDAGRPFNMSMIDDKEVNDLIEKFIRDNWSE-----DEEFKALLVNAEKTSS 168


>gi|126664590|ref|ZP_01735574.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17]
 gi|126630916|gb|EBA01530.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17]
          Length = 721

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 41/168 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLC 67
           + S  ID ++  + E + A   +    V A AGSGKT +LV R+   +  N  P+T LL 
Sbjct: 2   DVSYIIDGLNDAQREAVTAE--SDHLLVLAGAGSGKTRVLVHRMAWQMQVNRVPATGLLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR+ E++   S                                     
Sbjct: 60  VTFTNKAAKEMRHRIEEMMNIPSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             GL + T H     +++    +AN+  +F + D +   ++++   + 
Sbjct: 84  --GLWIGTFHGIAHRLLRAHWKDANLPENFQVLDSDDQLRMVKRVMRE 129


>gi|33864183|ref|NP_895743.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33635767|emb|CAE22092.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
          Length = 802

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 24/216 (11%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       + A AGSGKT  L  R+  L+    A PS +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHEGPLLLVAGAGSGKTRALTHRIAHLIGEHGADPSQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130
             AA EM  R+  ++      S            G+  +     + R L   I  E    
Sbjct: 61  NKAAREMKERLELLLAQRLAQSQ----------FGQPWSTLPPVEQRQLRTRIYREVTKE 110

Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           L + T HA    +++    +F  +  +  T  F+I DE  ++ L++E     L    LD 
Sbjct: 111 LWIGTFHALFARMLRYDIDKFKDKEGLTWTKQFSIYDEADAQSLVKEIVTQELQ---LDP 167

Query: 185 NEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218
                K     +  + ++    + L + +   R  L
Sbjct: 168 KRFEPKKVRWAISNAKNQGWFPDQLAAQVDGQRGKL 203


>gi|301299732|ref|ZP_07205982.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852663|gb|EFK80297.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 744

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 45/193 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +  ++  +SE +L ++      + A AGSGKT +L  RV  L+     +P  +L +T T 
Sbjct: 7   LSGMNDKQSEAVLCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 65  KAAREMRERVNNLMGEGAE--------------------------------------DIW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T HA C  I+++   +      F IA   + + L+++     L  + +D  +   +A 
Sbjct: 87  VSTFHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQ----VLNDLNIDTKKYDPRAI 142

Query: 193 YEILEISNDEDIE 205
             ++  + ++ ++
Sbjct: 143 LSVISNAKNDLLD 155


>gi|187251691|ref|YP_001876173.1| UvrD/REP helicase [Elusimicrobium minutum Pei191]
 gi|186971851|gb|ACC98836.1| UvrD/REP helicase [Elusimicrobium minutum Pei191]
          Length = 1074

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 88/198 (44%), Gaps = 4/198 (2%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAA 75
           I+  ++    ++   R+  V A AG+GKT +L+ R+  L ++ N     ++ LT T+ AA
Sbjct: 4   ITDLQTRYEASTVTDRNIVVEAGAGTGKTTLLISRLCYLMIVKNISVERIVALTFTEKAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+   +     + + +   +  KI  +        +       +LE      + T
Sbjct: 64  AEIKIRLSAQLQKI--IKECLSVTQKDKITLELLAHLSKEEIIIRAQRVLEFLERGFIST 121

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH FC  I++ +P+EA I+    + + ++ + + +      L   +     + ++ +  +
Sbjct: 122 IHGFCSYILKAYPVEAGISPSAVVDEGQRRETVFKRLWNKWLEEELGGGGPK-EEIWKRV 180

Query: 196 LEISNDEDIETLISDIIS 213
           L+  N ED+     D+  
Sbjct: 181 LKEINLEDLYNYAFDMAG 198


>gi|298524440|ref|ZP_07011849.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|298494234|gb|EFI29528.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A]
          Length = 695

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             KAR+           
Sbjct: 76  TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|113954443|ref|YP_729463.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311]
 gi|113881794|gb|ABI46752.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311]
          Length = 803

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 17/173 (9%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P+ +L +T T
Sbjct: 1   MSFLAGLNDAQKRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++         +  ++  +     P          +   I +    L
Sbjct: 61  NKAAREMKERLELLLA------QRLAQSQFGQPWSTLPPVEQRQLRTRIYREITK---EL 111

Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
            + T HA    +++    +F     +  T  F+I DE  ++ L++E     L 
Sbjct: 112 WIGTFHALFARMLRFDIDKFKDPEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|228937586|ref|ZP_04100224.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970473|ref|ZP_04131124.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977042|ref|ZP_04137445.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407]
 gi|228782659|gb|EEM30834.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407]
 gi|228789205|gb|EEM37133.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822067|gb|EEM68057.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938079|gb|AEA13975.1| DNA helicase II [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 753

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+ +++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|229820063|ref|YP_002881589.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229565976|gb|ACQ79827.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1110

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 15/204 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           +    +   +A+D + S +V A AGSGKT  LV+RV  L++ +  P + +  +T T+ A 
Sbjct: 3   LVDDAARSRIATDTSSSLFVEAGAGSGKTRSLVERVGTLVMDDGVPLAQIAAITFTEKAG 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+          +      E        P +S +++        LE   G  + T
Sbjct: 63  AELRDRLRGEFERVWRRARPGGPQE-------DPARSSLAE------RALEDLDGAAIGT 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+F + I+ + P+EA +     ++DE  S    +E + S L   +LD+ E   +    +
Sbjct: 110 LHSFAQRILARHPVEAGLPPLIEVSDEVASGVAFDE-RWSVLQRELLDDEEMAPRLLLAM 168

Query: 196 LEISNDEDIETLISDIISNRTALK 219
                 + + +L     ++   ++
Sbjct: 169 AAGVTFDHLRSLARAFGADWDLIE 192


>gi|294791935|ref|ZP_06757083.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27]
 gi|294457165|gb|EFG25527.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27]
          Length = 729

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L    K +Q           + A AGSGKT +L  R+  LL    +P  +L +T T  AA
Sbjct: 5   LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLGQGVNPYEILAITFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV  ++   +                                        + + T
Sbjct: 65  KEMKSRVEGLVGDVA--------------------------------------NRIWLST 86

Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+FC   ++ +        S+F I D   S+ +I+ A K+ 
Sbjct: 87  FHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIKAALKAL 128


>gi|262282991|ref|ZP_06060758.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA]
 gi|262261243|gb|EEY79942.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA]
          Length = 1227

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L       L   T T  AA E+ 
Sbjct: 40  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVSIQELFISTFTVKAAGELK 99

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + ++     S +                    + +  L   L       + T+ +F
Sbjct: 100 ERLEKELSKALKESQD-------------------EELKEHLAQQLAAIATADIGTMDSF 140

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E  +           +++   F ++++ 
Sbjct: 141 TQKLLNKYGYLLGLAPNFRILQSASEQTMLQNEVFQQLFEQYYTGEQKDI---FEKLVKN 197

Query: 199 SNDEDIETLISDIISNRTALKLIF-FFFSYLWRRKIIEKSLW 239
              +       +I   R  +  I+ F  S    ++ ++    
Sbjct: 198 FTGKK-----KNISGFRQQVYTIYQFLQSTSNPQRWLQDFFL 234


>gi|330470059|ref|YP_004407802.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032]
 gi|328813030|gb|AEB47202.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032]
          Length = 797

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 40/169 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           H + + L+      Q  A     S   + A AGSGKT +L  R+  LL A + HP  ++ 
Sbjct: 26  HLDPLQLVEGLNGPQRDAVTHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIA 85

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++   + L                                   
Sbjct: 86  ITFTNKAAGEMKERVAKLVGPRARL----------------------------------- 110

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + V T H+ C  I++     A + S F+I D + S++L++   +  
Sbjct: 111 ---MWVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQMVAREL 156


>gi|298253336|ref|ZP_06977128.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
 gi|297532731|gb|EFH71617.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
          Length = 978

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 41/175 (23%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH 61
           +     +  + +D ++  +S+ +    P     + A AGSGKT +L +R+  +L    A 
Sbjct: 108 HSRVAVDAQKLLDGLNPQQSQAVQYDGPA--LLIGAGAGSGKTRVLTRRIAWILSQKGAW 165

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           PS +L +T T  AAAEM  R+ ++I + +                               
Sbjct: 166 PSQILAITFTNKAAAEMRERLSKLIGSEA------------------------------- 194

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    + V T H+ C  I+++      + S F+I D    ++L++      
Sbjct: 195 -------NTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERLVKIIATEL 242


>gi|226356134|ref|YP_002785874.1| DNA helicase [Deinococcus deserti VCD115]
 gi|226318124|gb|ACO46120.1| putative DNA helicase UvrD [Deinococcus deserti VCD115]
          Length = 744

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 41/161 (25%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+SQ    Q  A+D  T  A V A AGSGKT  LV R+  L+      P  +L +T T 
Sbjct: 11  DLLSQLNDTQAQAADHFTGPALVIAGAGSGKTRTLVYRIAHLIQHYGVDPGEILAVTFTN 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R                                   A+HL    +E    L 
Sbjct: 71  KAAAEMRER-----------------------------------AQHL----VEGADRLW 91

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           + T H+    I++ +     +   F I D++    +++E  
Sbjct: 92  MSTFHSAGVRILRAYGEHIGLKRGFVIYDDDDQSDILKEVM 132


>gi|257456155|ref|ZP_05621352.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii
           ATCC 35580]
 gi|257446241|gb|EEV21287.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii
           ATCC 35580]
          Length = 1167

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 65/174 (37%), Gaps = 21/174 (12%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
             ID+       Q  A     +A V+A AGSGKT +L  R + L+   N     +L LT 
Sbjct: 7   NMIDICKDLNEHQKQAVKINENAVVAAGAGSGKTKVLASRYVYLITEKNYQVENILALTF 66

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  R+   +      +D+ +                    R+     L++   
Sbjct: 67  TDKAAAEMHRRIYRELQKMYTETDDAM-------------------QRNRAGAALDSFFK 107

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
            ++ TI AFC  I         I+  F I D  +SK+L              DN
Sbjct: 108 AQIMTIDAFCHKIAVTACRRFGISPDFTI-DLTESKRLAYNLSLDFFLEHRADN 160


>gi|229015685|ref|ZP_04172668.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273]
 gi|228745602|gb|EEL95621.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273]
          Length = 751

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +  T D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSTTDRLLNGLNPEQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|197120525|ref|YP_002132476.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196170374|gb|ACG71347.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 797

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 44/176 (25%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT ++V R+ RL+      P  +L +T T 
Sbjct: 11  DLLQDLNDAQREAVLHDDGPLLVLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTN 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                        L 
Sbjct: 71  KAAGEMRERLERLLGPLAR--------------------------------------ELW 92

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           VQT HAF    +++    A ++  FAI D++   +L     K  L+ + LD  E L
Sbjct: 93  VQTFHAFGARFLRREAARAGLSPSFAIYDDDDQLRL----VKGLLSELGLDEGEGL 144


>gi|300214971|gb|ADJ79387.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 744

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 45/193 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +  ++  +SE +L ++      + A AGSGKT +L  RV  L+     +P  +L +T T 
Sbjct: 7   LSGMNDKQSEAVLCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 65  KAAREMRERVNNLMGEGAE--------------------------------------DIW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T HA C  I+++   +      F IA   + + L+++     L  + +D  +   +A 
Sbjct: 87  VSTFHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQ----VLNDLNIDTKKYDPRAI 142

Query: 193 YEILEISNDEDIE 205
             ++  + ++ ++
Sbjct: 143 LSVISNAKNDLLD 155


>gi|291295604|ref|YP_003507002.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290470563|gb|ADD27982.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 706

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S+ +  ++   S+Q         A V A AGSGKT  +V R+  LL     +P+ +L +
Sbjct: 1   MSDLLSSLN--PSQQEAVLHFEGPALVVAGAGSGKTRTVVHRIAYLLRERRVYPAEILAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+ +++   +                                      
Sbjct: 59  TFTNKAAGEMKERLEKMVGRPAR------------------------------------- 81

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             L V T HA    I++ +     +   F I DE+    L++E  K  
Sbjct: 82  -DLWVSTFHAAAVRILRTYGEYVGLRPGFVIYDEDDQNTLLKEVLKEL 128


>gi|219848809|ref|YP_002463242.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
 gi|219543068|gb|ACL24806.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
          Length = 742

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 42/191 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    +Q   +  T    V A  GSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 7   LANLNPQQQRAVTTVTGPVLVLAGPGSGKTRVLTHRIAYLIDEVGVDPLQILAVTFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R++ ++                                            L V 
Sbjct: 67  AREMRERLMALLGEAIAHD-------------------------------------LTVG 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C   +++  +       F I D +  ++L+    K  L  + L+  + L +A   
Sbjct: 90  TFHSICARWLRRDIVHLGRERDFVIYDTDDQERLL----KRVLRELNLNEKQHLPRAILS 145

Query: 195 ILEISNDEDIE 205
            +  + +E ++
Sbjct: 146 AISHAKNELVD 156


>gi|304392202|ref|ZP_07374144.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130]
 gi|303296431|gb|EFL90789.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130]
          Length = 860

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++    ++           V A AG+GKT +L  R+  +L    A PS +L +T T
Sbjct: 34  YLDGLN--PEQRDAVLTTEGPLLVLAGAGTGKTRVLTTRITHILQQRMAWPSQILAVTFT 91

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM HR+   +                                          G  
Sbjct: 92  NKAAREMKHRIAAQVGEAVE-------------------------------------GMP 114

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++      + S F I D +   +L+++     + +  +D+     K 
Sbjct: 115 WLGTFHSICVKILRRHAELVQLKSGFTILDTDDQVRLMKQ----LIQAENIDDKRWPAKQ 170

Query: 192 FYEILEISNDEDI 204
              +++   ++ +
Sbjct: 171 LAGLIDGWKNKAL 183


>gi|260428560|ref|ZP_05782539.1| DNA helicase II [Citreicella sp. SE45]
 gi|260423052|gb|EEX16303.1| DNA helicase II [Citreicella sp. SE45]
          Length = 815

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 73/193 (37%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + E +   D      + A AG+GKT  L  R++ LL++  A P+ +L +T T
Sbjct: 27  YLDDLNPAQREAVERLD--GPVLMLAGAGTGKTKALTSRIVHLLVSGKARPNEILSVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                       +  G  
Sbjct: 85  NKAAREMKERVGRLLGQ-------------------------------------QIEGMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  ++++      + S+F I D +   +L+++     +A+  +D      + 
Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIAANNIDEKRWPARQ 163

Query: 192 FYEILEISNDEDI 204
              +++   +   
Sbjct: 164 LSGLIDHWKNRAW 176


>gi|288801211|ref|ZP_06406666.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331822|gb|EFC70305.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 803

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++L+++   +Q  A +  +    V A AGSGKT +L  ++  L+     P ++L LT T 
Sbjct: 1   MNLLNELNEKQREAVEYISGPQLVIAGAGSGKTRVLTYKIAYLIEKGFMPWSILALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                       ++   L+
Sbjct: 61  KAANEMKERIATLVGE-------------------------------------QSARQLQ 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++          +F I DE  S+ LI+   K  
Sbjct: 84  MGTFHSVFSRILRNEAATIGYQRNFTIYDESDSRSLIKTIVKEL 127


>gi|260463377|ref|ZP_05811578.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
 gi|259030967|gb|EEW32242.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
          Length = 697

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 31/168 (18%)

Query: 11  SETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
              ++ ++  + + +   D        V A AGSGKT+ L  RV  L++  A P  +L +
Sbjct: 17  PAYLERLNDAQRQAVEHGDGKIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRILLM 76

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AA+EM+ RV  I          +++  +T                          
Sbjct: 77  TFSRRAASEMARRVERIAGEVLGRDAAVITDALT-------------------------- 110

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 T H     +++ + LE  +   F I D E S  L+   +   
Sbjct: 111 ---WAGTFHGIGARLLRDYALEIGLDPAFTIHDREDSADLMNLVRHEL 155


>gi|217969625|ref|YP_002354859.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506952|gb|ACK53963.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 744

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+S    EQL A   P + A + A AGSGKT +L  R+  L+ +    P+ +L +T T  
Sbjct: 4   LLSNLNPEQLQAVSLPAQHALILAGAGSGKTRVLTTRIAWLIQSGQVDPAGILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++   +                                       G+ +
Sbjct: 64  AAKEMLARLGAMLPVSTR--------------------------------------GMWI 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H     +++    +A +   F I D          A K  L ++ +D+ +   +   
Sbjct: 86  GTFHGLANRLLRAHHRDAGLPQLFQILDSADQLA----AIKRLLKTLNVDDEKFPPRELQ 141

Query: 194 EILEISNDEDIETLISDIISNRTALK--LIFFFFSYLWRRKIIE 235
             +    +      + +   + T L+  L   + +   R  +++
Sbjct: 142 HFINGQKEAGNRPHVVEAWDDYTRLRVQLYQEYEAQCQRESVVD 185


>gi|149278325|ref|ZP_01884463.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39]
 gi|149231091|gb|EDM36472.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39]
          Length = 1080

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 10/171 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AGSGKT  L    L +LL+       +L +T T  A  EM  R++E++  ++  +
Sbjct: 9   ILQASAGSGKTFSLTAHYLTILLSGETKYREILAVTFTNKATEEMKTRIMEVLRGFATAA 68

Query: 94  DEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           +E+    +  ++G      +    K+  +   IL       V TI  F + +++ F  E 
Sbjct: 69  EEVEDYRLLVLKGHPDLDRQELQEKSARIYKRILHDYSRFSVSTIDGFVQKVIRGFAFEL 128

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
            + S +A+              K+ LA  + +  +        I++++ D 
Sbjct: 129 GLDSGYALEMNFDK-------VKNELADRLDEQMDNNPALLQWIIDLALDR 172


>gi|146280569|ref|YP_001170722.1| DNA-dependent helicase II [Pseudomonas stutzeri A1501]
 gi|145568774|gb|ABP77880.1| DNA helicase II [Pseudomonas stutzeri A1501]
          Length = 729

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSH 80
           +++   + P     V A AGSGKT +LV R+  L  +  A   ++L +T T  AAAEM  
Sbjct: 15  AQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLHQVERASLHSILSVTFTNKAAAEMRQ 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 75  RIEQLLHV--------------------------------------NPQGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +  +F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWREAKLAENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWWINAQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|294677028|ref|YP_003577643.1| DNA helicase II [Rhodobacter capsulatus SB 1003]
 gi|294475848|gb|ADE85236.1| DNA helicase II [Rhodobacter capsulatus SB 1003]
          Length = 852

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  +D ++  +   + A D      + A AG+GKT  L  R+  L+ +  A P+ +L +T
Sbjct: 29  TPWLDGLNDAQRRAVEALD--GPVLMLAGAGTGKTKALTARIAHLIHSGRARPNEVLAVT 86

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++                                          G
Sbjct: 87  FTNKAAREMKDRIGRLMGQTLE-------------------------------------G 109

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+ C  ++++      + S+F I D +   +L+++     + +  +D      
Sbjct: 110 MPWLGTFHSVCVKLLRRHAELVGLRSNFTILDTDDQIRLLKQ----LILAANMDEKRWPA 165

Query: 190 KAFYEILEISNDEDI 204
           +    +++   +   
Sbjct: 166 RQLAGLIDSWKNRAW 180


>gi|297571848|ref|YP_003697622.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932195|gb|ADH93003.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 836

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 40/171 (23%)

Query: 7   FQEHSETIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           F  ++   +L      +Q            V A AGSGKT +L  R+  L+ A  A P  
Sbjct: 43  FAHNARIRELTEGLNPQQHQAVVHTGGHLLVVAGAGSGKTRVLTTRIAYLIAAGKARPGE 102

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 103 ILAITFTNKAAKEMRERLEGLLGDVAR--------------------------------- 129

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I++       + S F I D   S +L++   + 
Sbjct: 130 -----RMWISTFHSACVRILRTEHKALGMRSSFTIYDAADSARLMKIVAQE 175


>gi|209525368|ref|ZP_03273909.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328]
 gi|209494219|gb|EDZ94533.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328]
          Length = 779

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 19/198 (9%)

Query: 11  SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            E++D ++   S Q  A +       V A AGSGKT  L  RV  L+  +  +P  +L +
Sbjct: 1   MESVDFLTSLNSSQRQAVEHFCGPMLVVAGAGSGKTRALTYRVANLIDNHKVNPENILAV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA E+ +R+  I                  +   +P      +++ +   + +  
Sbjct: 61  TFTNKAAREIKNRIESIFAQQQAQKQYQKP-----LSALEPATQTQLRSQ-IYRKLTKH- 113

Query: 129 GGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIML 182
             L + T H+ C  I++    ++  E       +F+I DE  +  L+++    TL   + 
Sbjct: 114 --LWMGTFHSLCARILRYDINKYQDEKGRQWKPNFSIFDESDALALVKQIVTKTLN--LD 169

Query: 183 DNNEELKKAFYEILEISN 200
           D   + +K  Y+I    N
Sbjct: 170 DKKFDPRKTRYKISNAKN 187


>gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247]
 gi|262084658|gb|ACY20626.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247]
          Length = 828

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 42/168 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +  +D ++    ++           + A AGSGKT +L +R+  LL A +  P  +L +T
Sbjct: 23  TRLLDGLN--PQQRAAVLHTGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQVLAIT 80

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV++++   +                                       
Sbjct: 81  FTNKAAAEMRERVIDLVGPRATY------------------------------------- 103

Query: 130 GLKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I++ Q  L A + S+F+I D + SK+L+    +  
Sbjct: 104 -MWVSTFHSTCVRILRAQSGLLAGMNSNFSIYDADDSKRLLGMIIRDL 150


>gi|313898067|ref|ZP_07831606.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2]
 gi|312957095|gb|EFR38724.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2]
          Length = 763

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D +++ + E +   D      + A AGSGKT ++  R+  L+     +P+ +L +T T 
Sbjct: 4   LDQLNEHQLEAVQCVD--HHLRIIAGAGSGKTRVVTTRIAYLINDCGVYPNKVLAITFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 62  KAAREMKERVENLLGDVAK--------------------------------------AVT 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + TIH+FC  ++++  LE     +F I D +  K ++ +A K  
Sbjct: 84  ISTIHSFCVRLLREDILELGYPRNFTILDADDQKSILRDAYKQM 127


>gi|289446520|ref|ZP_06436264.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289419478|gb|EFD16679.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CPHL_A]
          Length = 702

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             KAR+           
Sbjct: 76  TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|206603905|gb|EDZ40385.1| Putative exodeoxyribonuclease V, beta subunit [Leptospirillum sp.
           Group II '5-way CG']
          Length = 1095

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 7/166 (4%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII---TAWSHL 92
           + A+AG+GKT  L    L ++L+   P  +L +T T+AAA ++  R+ +++     W   
Sbjct: 21  IEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAAQDVRERIQKLLEDVRQWRSG 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           S   +  ++            +   R  L   L       +QTIH+FC+++++Q      
Sbjct: 81  SKAEILPDLRAYLETLETDPLLLDMR--LREALVVFDRAPIQTIHSFCQSLLRQMSFLLG 138

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
             ++  +  E+Q   ++ E+      S+    +  L + F  + E 
Sbjct: 139 APANLVLVPEDQ--PVLYESSVRLWRSLFYGRDSRLAEFFLSVWED 182


>gi|87309221|ref|ZP_01091358.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
 gi|87288212|gb|EAQ80109.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
          Length = 759

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 41/181 (22%)

Query: 13  TIDLI-SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           T DL+ S T  ++           V A  GSGKT ++  R+  LL     P+ +  LT T
Sbjct: 2   TADLLQSLTDPQREAVLHVDGPLLVLAGPGSGKTRVITHRIAHLLSQGVRPTQIAALTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+                                          L     +
Sbjct: 62  NKAADEMRSRLDR----------------------------------------LAPGENV 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H FC  +++Q+     +  ++ I D   S  L++   + T   +     E++  A
Sbjct: 82  WIGTFHRFCARLLRQYAEYRGLQPNYTIYDTSDSLSLLKRTIRETDVQLTHATPEQVASA 141

Query: 192 F 192
            
Sbjct: 142 I 142


>gi|69246832|ref|ZP_00604141.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO]
 gi|68195065|gb|EAN09527.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO]
          Length = 744

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILASGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|302877434|ref|YP_003845998.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302580223|gb|ADL54234.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 723

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           L+S     QL A   P +SA + A AGSGKT +L  R+  L+   A  P  +L +T T  
Sbjct: 15  LLSGLNPPQLQAVTLPRQSALILAGAGSGKTRVLTTRIAYLISTGAVSPHGILAVTFTNK 74

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                           G+ +
Sbjct: 75  AAKEMVTRLSAMLPI--------------------------------------NTRGMWI 96

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    EA +   F I D          A K  + ++ +D+ +   +   
Sbjct: 97  GTFHGLCNRLLRAHYREAALPQTFQILDSGDQLS----AIKRIMKALEIDDEKYPPREMQ 152

Query: 194 EILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
             +  S ++ +     +      R  + +   + +   R  +++
Sbjct: 153 NFISGSKEQGLRAHDVEAFDPYTRRKVDVYAEYDAQCQREGVVD 196


>gi|241763721|ref|ZP_04761769.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241367026|gb|EER61411.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 821

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 72/221 (32%), Gaps = 46/221 (20%)

Query: 19  QTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
               EQL A   P   A + A AGSGKT +L  R+  LL    A P  +L +T T  AA 
Sbjct: 31  NLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYATPGGILAVTFTNKAAK 90

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+  ++                                           G+ + T 
Sbjct: 91  EMVARLSAMLPV--------------------------------------NVRGMWIGTF 112

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H  C  +++     A +   F I D +        A K       +D+     K     +
Sbjct: 113 HGLCNRLLRAHHKAAGLPQAFQILDTQDQLS----AIKRLCKQHNVDDERFPPKQLAYFI 168

Query: 197 EISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
               +E +    + +    +R  +++   +     R  +++
Sbjct: 169 ANCKEEGMRPGDVPTHDSDSRKKVEIYQLYEEQCQREGVVD 209


>gi|159902871|ref|YP_001550215.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211]
 gi|159888047|gb|ABX08261.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211]
          Length = 809

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 27/222 (12%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           Q+ +  +D ++    +    +       V A AGSGKT  L  R+  L+      PS +L
Sbjct: 3   QQSNSFLDGLN--NEQSNAVNHFEGPLLVVAGAGSGKTRALTHRIAHLITEYKVDPSEIL 60

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL- 125
            +T T  AA EM  R+           + +L+  I K Q  +P  S     ++   T + 
Sbjct: 61  AVTFTNKAAREMKERL-----------ELLLAKRIAKYQLDQPWSSVSLVEQNQFRTRIY 109

Query: 126 -ETPGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
            E    L + T HA    +++    +F  +  +  T +F+I DE  ++ LI+E     + 
Sbjct: 110 REVTKDLWIGTFHALFSKLLRFDIEKFVDKEGLKWTKYFSIYDETDAQSLIKEI---IIQ 166

Query: 179 SIMLDNNEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218
            + LD      K     +  + ++ I  +         R  L
Sbjct: 167 DMNLDPKRFEPKKVRWAISNAKNQGILPDQFTQSAEGQRGKL 208


>gi|119510681|ref|ZP_01629809.1| DNA helicase II [Nodularia spumigena CCY9414]
 gi|119464635|gb|EAW45544.1| DNA helicase II [Nodularia spumigena CCY9414]
          Length = 774

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 20/200 (10%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           TID +S     Q  A +       V A AGSGKT  L  R+  L+L    +P  +L +T 
Sbjct: 4   TIDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHGVYPEHILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  +      +       ++     +   +S + K          T   
Sbjct: 64  TNKAAREMKERIQRLFGEDLAMKKHGQKFDLLTEYQQMQLRSQVYK---------NTIKD 114

Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           L   T H+    I++    ++  E     T +F+I DE     L++E        + LD+
Sbjct: 115 LWCGTFHSLFSKILRFDIDKYQDEKGRRWTRNFSIFDESDVISLMKEIVN---KQLNLDD 171

Query: 185 NEELKKAFYEILEISNDEDI 204
            +   ++    +  + ++  
Sbjct: 172 KKFDARSVRYAISNAKNQGF 191


>gi|114570609|ref|YP_757289.1| ATP-dependent DNA helicase Rep [Maricaulis maris MCS10]
 gi|114341071|gb|ABI66351.1| ATP-dependent DNA helicase, Rep family [Maricaulis maris MCS10]
          Length = 763

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 47/221 (21%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  +D ++  +   + A D      V A AG+GKT +L  R+  +L    A P  +L +T
Sbjct: 16  TPYLDGLNAEQRAAVEAMD--GPVLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVT 73

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +II                                           
Sbjct: 74  FTNKAAREMKERVGKIIGEAVEGVP----------------------------------- 98

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+    I+++     ++ S F I D +   +L+++     + +  +D      
Sbjct: 99  --WLGTFHSVSAQILRRHAELVDLKSSFTILDTDDQLRLMKQ----IIQAENIDEKRWTP 152

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
           +    +++   +     L+ D +               L+R
Sbjct: 153 RHLASLIDGWKNRG---LMPDQLGEDDKWAFAEGRGQDLYR 190


>gi|90962321|ref|YP_536237.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
 gi|90821515|gb|ABE00154.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
          Length = 744

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 45/193 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +  ++  +SE +L ++      + A AGSGKT +L  RV  L+     +P  +L +T T 
Sbjct: 7   LSGMNDKQSEAVLCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 65  KAAREMRERVNNLMGEGAE--------------------------------------DIW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T HA C  I+++   +      F IA   + + L+++     L  + +D  +   +A 
Sbjct: 87  VSTFHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQ----VLNDLNIDTKKYDPRAI 142

Query: 193 YEILEISNDEDIE 205
             ++  + ++ ++
Sbjct: 143 LSVISNAKNDLLD 155


>gi|70726047|ref|YP_252961.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435]
 gi|68446771|dbj|BAE04355.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435]
          Length = 731

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +  K +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +++   + +                                      + + T 
Sbjct: 67  EMKERVEQLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|145219316|ref|YP_001130025.1| ATP-dependent DNA helicase PcrA [Prosthecochloris vibrioformis DSM
           265]
 gi|145205480|gb|ABP36523.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeovibrioides DSM
           265]
          Length = 728

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 39/164 (23%)

Query: 15  DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           DL+    + ++  AS       V A AGSGKT ++  R+  L+         +L LT T 
Sbjct: 3   DLLQDLSAVQRDAASATEGPVMVLAGAGSGKTRVITYRIANLIGNQGVPAGNILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HRV +++   S                                      GGL 
Sbjct: 63  KAAGEMRHRVDQLLGPGSS-------------------------------------GGLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    +++++      +  F+I D + SK LI +     
Sbjct: 86  IGTFHSVFARLLREYIDRLGYSRSFSIFDSDDSKSLIRQCMAEL 129


>gi|87123150|ref|ZP_01079001.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917]
 gi|86168870|gb|EAQ70126.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917]
          Length = 796

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 19/174 (10%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P+ +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130
             AA EM  R+  ++      S            G+  +     + R L   I  E    
Sbjct: 61  NKAAREMKERLELLLAQRLAQSQ----------FGQPWSTLPPVEQRQLRSRIYREVTKD 110

Query: 131 LKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLA 178
           L + T HA    +++    +F     ++    F+I DE  ++ L++E     L 
Sbjct: 111 LWIGTFHALFARMLRFDIDKFKDAEGLSWTKQFSIYDETDAQSLVKEIVTQELQ 164


>gi|327314684|ref|YP_004330121.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289]
 gi|326946329|gb|AEA22214.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289]
          Length = 842

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 69/188 (36%), Gaps = 42/188 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D++S     Q  A +  T  + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 9   DILSALNESQRAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILALTFTNK 68

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  I TA                                            +
Sbjct: 69  AAREMKERIARITTAGE-------------------------------------AQRFYM 91

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I+++       + +F I DE  S+ LI    KS + ++ LD       + +
Sbjct: 92  GTFHSIFSRILRREGQAVGFSGNFTIYDESDSRSLI----KSIVKALGLDEKAYKPSSVH 147

Query: 194 EILEISND 201
             + ++ +
Sbjct: 148 SFISMAKN 155


>gi|312135101|ref|YP_004002439.1| uvrd/rep helicase [Caldicellulosiruptor owensensis OL]
 gi|311775152|gb|ADQ04639.1| UvrD/REP helicase [Caldicellulosiruptor owensensis OL]
          Length = 714

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ++ + +   +Q  A         V A AGSGKT ++  R+  +L    A P  +L +T T
Sbjct: 1   MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILSMGLADPDNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ ++++                                      ++   +
Sbjct: 61  NKAADEMKERIKKLVST-------------------------------------KSFAEM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I++        +++F I D +   +++ E     
Sbjct: 84  WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRNQILRECFNKL 128


>gi|229009788|ref|ZP_04167008.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048]
 gi|228751406|gb|EEM01212.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048]
          Length = 743

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + ++ ++    +Q           + A AGSGKT +L  R+  LL      P  +L +T 
Sbjct: 6   KLLNGLN--PQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ +++   +                                        
Sbjct: 64  TNKAAREMRERIDKLVGPEAE--------------------------------------D 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 86  IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|227509969|ref|ZP_03940018.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190575|gb|EEI70642.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 743

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 73/212 (34%), Gaps = 56/212 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            K ++           + A AGSGKT +L  R+  ++  N   P  +L +T T  AA EM
Sbjct: 11  NKDQKDAVIHTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                       E+   + V T HA
Sbjct: 71  RERVSKLLD--------------------------------------ESGDDVWVSTFHA 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILE 197
            C  I+++   +      F IAD  + + L     K  L  + +D  + + +     I  
Sbjct: 93  LCVRILRRNIDQLGFNRAFTIADTSEQRTL----VKRVLRELNIDPKKFDPRAVLSSISN 148

Query: 198 ISN------------DEDIETLISDIISNRTA 217
             N            D D + +++D+ +   A
Sbjct: 149 AKNDLLTPKAFKAQADNDFDQIVADVYARYQA 180


>gi|171743075|ref|ZP_02918882.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC
           27678]
 gi|283455915|ref|YP_003360479.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|171278689|gb|EDT46350.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC
           27678]
 gi|283102549|gb|ADB09655.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
          Length = 885

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 39/156 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI     +Q  A     ++  + A AGSGKT +L +R+  LL      S +L +T T  A
Sbjct: 23  LIKDLNPQQSEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKA 82

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+  I+   +                                        + + 
Sbjct: 83  AAEMRERLAAIVGPEAE--------------------------------------RMWIS 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H+ C  I+++   +  + S F+I D   S++LI+
Sbjct: 105 TFHSACVRILRRDGDQIGLKSGFSIYDTADSERLIK 140


>gi|309801365|ref|ZP_07695494.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222254|gb|EFO78537.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 794

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 39/156 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI     +Q  A     ++  + A AGSGKT +L +R+  LL      S +L +T T  A
Sbjct: 15  LIKDLNPQQSEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKA 74

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+  ++   +                                        + + 
Sbjct: 75  AAEMRERLAALVGPEAE--------------------------------------RMWIS 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H+ C  I+++   +  + S F+I D   S++LI+
Sbjct: 97  TFHSACVRILRRDGDQIGLKSGFSIYDTADSERLIK 132


>gi|293560000|ref|ZP_06676508.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162]
 gi|291606088|gb|EFF35514.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162]
          Length = 744

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILASGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|259047692|ref|ZP_05738093.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC
           49175]
 gi|259035883|gb|EEW37138.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC
           49175]
          Length = 773

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 47/203 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           +  +E I  ++  + E ++         V A AGSGKT +L  R+  +L      P  +L
Sbjct: 2   KNSNELIKGMNPRQKEAVM--HTQGPLLVMAGAGSGKTRVLTHRMAYILAEEEVQPWNIL 59

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA+EM  RV  ++                                       E
Sbjct: 60  AITFTNKAASEMKERVSALVG--------------------------------------E 81

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G + V T H+ C  I+++      +   F I D          A K  +  + +D+++
Sbjct: 82  QAGDMWVSTFHSMCVRILRRDCERIGLAKSFTIIDSGDQLS----AMKRIMQKLNIDSDK 137

Query: 187 -ELKKAFYEILEISND-EDIETL 207
            + +     I    N+ ED ET 
Sbjct: 138 FDARGILASISNAKNNFEDAETF 160


>gi|67924839|ref|ZP_00518236.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501]
 gi|67853326|gb|EAM48688.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501]
          Length = 772

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 32/242 (13%)

Query: 10  HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
            + +++ +SQ    Q +A +       V A AGSGKT  L  R+  L+      P ++L 
Sbjct: 1   MTASVNFLSQLNPSQRIAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-E 126
           +T T  AA EM  R+  +      L          K QG+  N       + LL  +  +
Sbjct: 61  VTFTNKAAREMKDRLERLFAQEMAL----------KQQGQPFNSLPEYDQKRLLSQVYKK 110

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITS---------HFAIADEEQSKKLIEEAKKSTL 177
           T   L + T H+ C  I++    + N            +F+I DE   + L++      L
Sbjct: 111 TTKKLWIGTFHSLCARILR---YDVNKYQDEKKRQWERNFSIFDESDVQSLVKNI---VL 164

Query: 178 ASIMLDNNEELKKAFYEILEISNDEDI--ETLISD--IISNRTALKLIFFFFSYLWRRKI 233
               LD+ +   +     +  + +  +  E  + +      R   ++   + + L     
Sbjct: 165 KQFNLDDKKFNPRTVRYAISNAKNLGLSPEAYLKENSYAKGRVIAEVYNEYQTQLAANNA 224

Query: 234 IE 235
           ++
Sbjct: 225 LD 226


>gi|220915236|ref|YP_002490540.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953090|gb|ACL63474.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 797

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 44/176 (25%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT ++V R+ RL+      P  +L +T T 
Sbjct: 11  DLLQDLNDAQREAVLHDDGPLLVLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTN 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                        L 
Sbjct: 71  KAAGEMRERLERLLGPLAR--------------------------------------ELW 92

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           VQT HAF    +++    A ++  FAI D++   +L     K  L+ + LD  E L
Sbjct: 93  VQTFHAFGARFLRREAARAGLSPSFAIYDDDDQLRL----VKGLLSELGLDEGEGL 144


>gi|261367235|ref|ZP_05980118.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum
           variabile DSM 15176]
 gi|282570836|gb|EFB76371.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum
           variabile DSM 15176]
          Length = 1160

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 36/224 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           I  T ++         S  VSA AGSGKT +LV+RV+ ++    HP    +LL +T T A
Sbjct: 7   IQFTPAQAAAIGARGGSLLVSAAAGSGKTRVLVERVVGMITDPQHPVEADSLLIMTFTNA 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAA++   +   +          +     ++  ++                        +
Sbjct: 67  AAAKLRADIATRLADEVRAHPGNVRLRRQQLLLQR----------------------ASI 104

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T+ AFC   +QQ     ++   F  A+E    ++ +E     L     D +    +AF 
Sbjct: 105 GTVDAFCLHFVQQHFAALDVPPDFETAEEADLARIEQEVLADLLEEAYEDPD---FRAFA 161

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           ++ +           +D  +    L+L  F  S     + ++  
Sbjct: 162 DLYDRGR--------TDQTAGNAVLELYHFSRSLPHPMQALQSF 197


>gi|33592827|ref|NP_880471.1| DNA helicase II [Bordetella pertussis Tohama I]
 gi|33601161|ref|NP_888721.1| DNA helicase II [Bordetella bronchiseptica RB50]
 gi|33572475|emb|CAE42046.1| DNA helicase II [Bordetella pertussis Tohama I]
 gi|33575596|emb|CAE32674.1| DNA helicase II [Bordetella bronchiseptica RB50]
          Length = 766

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++ +   EQ  A     + A V A AGSGKT +L  R+  L+    A P  LL +T T  
Sbjct: 2   MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++   +                                       GL +
Sbjct: 62  AAREMLTRMSTLLPIDTR--------------------------------------GLWI 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D          A K  L +  +D+ +   +   
Sbjct: 84  GTFHGLCNRMLRAHHRDAGLPQAFQILDTTDQLA----AIKRLLKAGNIDDEKYPPRDVQ 139

Query: 194 EILEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIE 235
             +  + +E +     +      R  +++   + +   R  +++
Sbjct: 140 RFINGAKEEGLRPGDVEAYDPHRRKLIEIYQLYEAQCQREGVVD 183


>gi|33596606|ref|NP_884249.1| DNA helicase II [Bordetella parapertussis 12822]
 gi|33573307|emb|CAE37290.1| DNA helicase II [Bordetella parapertussis]
          Length = 766

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++ +   EQ  A     + A V A AGSGKT +L  R+  L+    A P  LL +T T  
Sbjct: 2   MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++   +                                       GL +
Sbjct: 62  AAREMLTRMSTLLPIDTR--------------------------------------GLWI 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D          A K  L +  +D+ +   +   
Sbjct: 84  GTFHGLCNRMLRAHHRDAGLPQAFQILDTTDQLA----AIKRLLKAGNIDDEKYPPRDVQ 139

Query: 194 EILEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIE 235
             +  + +E +     +      R  +++   + +   R  +++
Sbjct: 140 RFINGAKEEGLRPGDVEAYDPHRRKLIEIYQLYEAQCQREGVVD 183


>gi|312870522|ref|ZP_07730641.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3]
 gi|311093984|gb|EFQ52309.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3]
          Length = 762

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  ++E +L ++      V A AGSGKT +L  RV  L+      P  +L +T T
Sbjct: 7   LLEGMNDKQAEAVLTTE--GPLLVMAGAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++   +                                        +
Sbjct: 65  NKAAKEMQERVGKLLGEGAQ--------------------------------------DI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +      F IAD  + + L+++     
Sbjct: 87  WVSTFHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLMKQVCAEL 131


>gi|218130915|ref|ZP_03459719.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697]
 gi|217987259|gb|EEC53590.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697]
          Length = 760

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I +    Q  A       + V A AGSGKT +L  ++  LL  +  P  +L LT T  
Sbjct: 3   DYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                           + +ARHL            +
Sbjct: 63  AAREMKERIARQVG--------------------------VERARHL-----------WM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+     +   TS F I D   SK L+    K  
Sbjct: 86  GTFHSIFLRILHAEAAQIGFTSRFTIYDTADSKSLLRSIIKEM 128


>gi|42519596|ref|NP_965526.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533]
 gi|41583885|gb|AAS09492.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533]
          Length = 748

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            SE   L      ++           V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA+EM  RV +++   +                                      
Sbjct: 61  TFTNKAASEMKERVQKLLGPAA-------------------------------------- 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++   +   +++F+IAD  +   LI+  +K  
Sbjct: 83  DSVWMSTFHALCVRILRRDAKKIGYSNNFSIADSAEQLTLIKRIEKDL 130


>gi|313680112|ref|YP_004057851.1| ATP-dependent DNA helicase, rep family [Oceanithermus profundus DSM
           14977]
 gi|313152827|gb|ADR36678.1| ATP-dependent DNA helicase, Rep family [Oceanithermus profundus DSM
           14977]
          Length = 719

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 44/182 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+S    +Q  A       A V A AGSGKT  +V RV  LL     +P+ +L +T T 
Sbjct: 5   DLLSSLNEQQQAAVQHFLGPALVIAGAGSGKTRTVVHRVAYLLAEREVYPAEVLAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++   +                                      G L 
Sbjct: 65  KAAGEMRERLSRMVGRAA--------------------------------------GELW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+    I++++     +   F + D++  + L++E     L S+ L+      +A 
Sbjct: 87  VSTFHSASLRILRRYGERIGLKPGFVVYDDDDQRVLLKE----VLGSLGLEARPTYVRAV 142

Query: 193 YE 194
            +
Sbjct: 143 LD 144


>gi|293571853|ref|ZP_06682869.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
 gi|291608107|gb|EFF37413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
          Length = 744

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILASGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|152964726|ref|YP_001360510.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
           SRS30216]
 gi|151359243|gb|ABS02246.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
           SRS30216]
          Length = 773

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 39/192 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L+     ++           + A AGSGKT +L  R+  LL    A P  +L +T T  A
Sbjct: 34  LVGLNPQQRQAVEHAGSPLLIVAGAGSGKTRVLTHRIAYLLARGRATPGEVLAITFTNKA 93

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV  ++     +                                      + V 
Sbjct: 94  AAEMRERVGALVGDVVGMGARS----------------------------------MWVS 119

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++      + + F+I D   S++L+    +     + LD  +   +A   
Sbjct: 120 TFHSACVRILRREATHLGMRTSFSIYDSADSQRLMAMVGR----ELDLDPKKHAPRAMAA 175

Query: 195 ILEISNDEDIET 206
           ++    +E ++ 
Sbjct: 176 MVSNLKNELVDE 187


>gi|257878463|ref|ZP_05658116.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933]
 gi|257882882|ref|ZP_05662535.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502]
 gi|257889340|ref|ZP_05668993.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410]
 gi|257894352|ref|ZP_05674005.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408]
 gi|260560050|ref|ZP_05832228.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68]
 gi|314937828|ref|ZP_07845145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04]
 gi|314941626|ref|ZP_07848506.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C]
 gi|314948873|ref|ZP_07852242.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082]
 gi|314951009|ref|ZP_07854076.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A]
 gi|314993010|ref|ZP_07858406.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B]
 gi|314996457|ref|ZP_07861500.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01]
 gi|257812691|gb|EEV41449.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933]
 gi|257818540|gb|EEV45868.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502]
 gi|257825700|gb|EEV52326.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410]
 gi|257830731|gb|EEV57338.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408]
 gi|260073885|gb|EEW62209.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68]
 gi|313589439|gb|EFR68284.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01]
 gi|313592533|gb|EFR71378.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B]
 gi|313596864|gb|EFR75709.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A]
 gi|313599517|gb|EFR78360.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C]
 gi|313642859|gb|EFS07439.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04]
 gi|313644663|gb|EFS09243.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082]
          Length = 747

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 8   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 66  FTNKAAKEMKERVNAILASGGE-------------------------------------- 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 88  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134


>gi|325687712|gb|EGD29733.1| exonuclease RexA [Streptococcus sanguinis SK72]
          Length = 1224

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   +++  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E             + E +  F  +++ 
Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSCLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|289565872|ref|ZP_06446313.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF]
 gi|289162332|gb|EFD10191.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF]
          Length = 744

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILASGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|257865963|ref|ZP_05645616.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30]
 gi|257872296|ref|ZP_05651949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10]
 gi|257875590|ref|ZP_05655243.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20]
 gi|257799897|gb|EEV28949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30]
 gi|257806460|gb|EEV35282.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10]
 gi|257809756|gb|EEV38576.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20]
          Length = 747

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           SE ++ ++  + E ++         + A AGSGKT +L  R+  L+   N +P  +L +T
Sbjct: 5   SELLERMNPRQKEAVM--HTEGPLLLMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++ +                                         
Sbjct: 63  FTNKAAREMKERVSQLLGSGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++       + +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDRIGYSKNFTIIDSSEQNTLMKRVLKEL 131


>gi|163857120|ref|YP_001631418.1| DNA helicase II [Bordetella petrii DSM 12804]
 gi|163260848|emb|CAP43150.1| DNA helicase II [Bordetella petrii]
          Length = 752

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 45/222 (20%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++ Q   EQ  A     + A V A AGSGKT +L  R+  L+    A P  LL +T T  
Sbjct: 1   MLEQLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++   +                                       GL +
Sbjct: 61  AAREMLARMSAMLPIDTR--------------------------------------GLWI 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D          A K  L +  +D+ +   +   
Sbjct: 83  GTFHGLCNRMLRAHHRDAGLPQTFQILDTTDQLA----AIKRLLKANGIDDEKYPPRDVQ 138

Query: 194 EILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRRKII 234
             +  + ++ +    +    S+R  L  I+  +    +R+ +
Sbjct: 139 RFINGAKEDGLRPGDVEAHDSHRRRLIEIYQLYEAQCQREGV 180


>gi|163938296|ref|YP_001643180.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4]
 gi|163860493|gb|ABY41552.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4]
          Length = 747

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q H  T D  L      +Q        +  + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAHMSTTDKLLNGLNPQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+ +++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895704|gb|EFG75400.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 777

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 53/213 (24%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63
           N   E  + ++ ++  + + ++         + A AGSGKT +L +R+  L+ A      
Sbjct: 9   NLTSEADQLLEGLNPQQRQAVV--HEGTPLLIVAGAGSGKTAVLTRRIAYLIAARGVGVG 66

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AAAEM  RV+ ++                            ++AR     
Sbjct: 67  QILAITFTNKAAAEMRERVVRLVG---------------------------NRAR----- 94

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS------- 175
                  + V T H+ C  I++        + S+F+I D + S++L++   +        
Sbjct: 95  ------AMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMIGRDMGLDIKR 148

Query: 176 ----TLASIMLDNNEELKKAFYEILEISNDEDI 204
                LA+ + +   EL      + ++++D D 
Sbjct: 149 YSPRLLANAISNLKNELIDPAEAVAKLTDDSDD 181


>gi|289178716|gb|ADC85962.1| PcrA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 1037

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +LI     +Q  A         + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 144 ELIGDLNEQQAQAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTN 203

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 204 KAAAEMRERLGALIGGVA--------------------------------------DRMW 225

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I+++   +  + S F I D    ++LI+      
Sbjct: 226 VSTFHSACVRILRRDGEQIGLKSGFTIYDTADCERLIKLVCADF 269


>gi|288927546|ref|ZP_06421393.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330380|gb|EFC68964.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 823

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
             +D +++++ E ++ +D      V A AGSGKT +L  ++  LL     P  +L LT T
Sbjct: 3   NLLDKLNESQREAVVYTD--GPQLVIAGAGSGKTRVLTFKIAYLLQQGLKPWNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                              A+HL +         
Sbjct: 61  NKAANEMKARIGNLVGH--------------------------EGAKHLFM--------- 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H+    I++        +S+F I DE  S+ LI+   K  
Sbjct: 86  --GTFHSIFSRILRVEAPRIGFSSNFTIYDETDSRSLIKTICKEM 128


>gi|84497950|ref|ZP_00996747.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
 gi|84381450|gb|EAP97333.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
          Length = 838

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 41/171 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65
            Q+    ++ +++ + E ++ +       + A AGSGKT +L  R+  LL A    P  +
Sbjct: 75  AQDPEALLEGLNEEQREAVIHA--GGPLLIIAGAGSGKTRVLTHRIGYLLAARGVQPGQI 132

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AAAEM  RV +++                             +AR       
Sbjct: 133 LAITFTNKAAAEMRERVQDLVG---------------------------PRAR------- 158

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                + V T H+ C  I+++   +  + S F+I D   S++L+    +  
Sbjct: 159 ----AMWVMTFHSACVRILRREADKVGMKSTFSIYDAADSQRLMSMVIRDM 205


>gi|257884411|ref|ZP_05664064.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501]
 gi|257887195|ref|ZP_05666848.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733]
 gi|257820249|gb|EEV47397.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501]
 gi|257823249|gb|EEV50181.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733]
          Length = 747

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 8   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 66  FTNKAAKEMKERVNAILASGGE-------------------------------------- 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 88  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134


>gi|261855720|ref|YP_003263003.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
 gi|261836189|gb|ACX95956.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
          Length = 728

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 37/197 (18%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           ++ +D +++ + E    + P+ +  V A AGSGKT +L  R+  L         ++L +T
Sbjct: 3   NKILDPLNEAQRE--AVTSPSLATLVLAGAGSGKTRVLTHRMAWLHDEQGLSLHSMLAVT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++                      PN++          +     G
Sbjct: 61  FTNKAAGEMRQRLSTLLA---------------------PNEA---------SSASSGLG 90

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           GL V T H+    +++    EAN+ S F I D +   +L     K  L    +D      
Sbjct: 91  GLWVGTFHSLSNRLLRMHHQEANLPSSFQILDSDDQLRL----VKRMLREANMDETRWPP 146

Query: 190 KAFYEILEISNDEDIET 206
           +    ++    ++ +  
Sbjct: 147 RMVAGLINGWKEQGLRA 163


>gi|312130397|ref|YP_003997737.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132]
 gi|311906943|gb|ADQ17384.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132]
          Length = 757

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D ++     Q  A +       + A AGSGKT +L  R+  L+     P  +L LT T  
Sbjct: 3   DYLAGLNEPQREAVTHIDGPLMIIAGAGSGKTRVLTYRIAYLIEKGVDPFNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM HR+ ++I   +                                        L +
Sbjct: 63  AAEEMRHRIEKVIGPEAK--------------------------------------NLWM 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++    +   TS+F I D + SK L+    K  
Sbjct: 85  GTFHSVFSKILRFDGHKLGYTSNFTIYDTDDSKSLLRSIIKEM 127


>gi|289573579|ref|ZP_06453806.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           K85]
 gi|289538010|gb|EFD42588.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           K85]
          Length = 694

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             KAR+           
Sbjct: 76  TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|254829488|ref|ZP_05234175.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165]
 gi|284802203|ref|YP_003414068.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578]
 gi|284995345|ref|YP_003417113.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923]
 gi|258601903|gb|EEW15228.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165]
 gi|284057765|gb|ADB68706.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578]
 gi|284060812|gb|ADB71751.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923]
          Length = 733

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|257068093|ref|YP_003154348.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810]
 gi|256558911|gb|ACU84758.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810]
          Length = 932

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 46/192 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           E ++ ++  + E            + A AGSGKT +L +R+  LL    A P  +L +T 
Sbjct: 117 ELVEGLNPAQRE--AVEHRGSPLLIVAGAGSGKTRVLTRRIAHLLHSREALPGEILAITF 174

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV E++   +                                        
Sbjct: 175 TNKAAAEMRERVGELVGPVAR--------------------------------------S 196

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++    A + S F I D   S +LI    K     + LD  +   +
Sbjct: 197 MWVSTFHSACVRILRRDAAAAGLKSSFTIYDSADSLRLITTIAKD----LQLDTKKHAPR 252

Query: 191 AFY-EILEISND 201
           A    I  + ND
Sbjct: 253 ALASRISSLKND 264


>gi|194015861|ref|ZP_03054476.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061]
 gi|194012216|gb|EDW21783.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061]
          Length = 740

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            +  ++ ++  + E + A+D      + A AGSGKT +L  R+  L+   +  P  +L +
Sbjct: 5   SNHLLEGLNDAQKEAVKATD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 63  TFTNKAAREMRERVQAILGPGA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + + T H+ C  I+++      +  +F+I D      +I+   K 
Sbjct: 85  DDIWISTFHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVIKNILKE 131


>gi|157691415|ref|YP_001485877.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
 gi|157680173|gb|ABV61317.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
          Length = 740

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            +  ++ ++  + E + A+D      + A AGSGKT +L  R+  L+   +  P  +L +
Sbjct: 5   SNHLLEGLNDAQKEAVKATD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 63  TFTNKAAREMRERVQAILGPGA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + + T H+ C  I+++      +  +F+I D      +I+   K 
Sbjct: 85  DDIWISTFHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVIKNILKE 131


>gi|86358422|ref|YP_470314.1| DNA helicase II protein [Rhizobium etli CFN 42]
 gi|86282524|gb|ABC91587.1| DNA helicase II protein [Rhizobium etli CFN 42]
          Length = 808

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ  A +       V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 36  DYLAGLNPEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 95

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 96  KAAREMKERIALLVGGAVE-------------------------------------GMPW 118

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++      ++S F I D +   +LI++     + +  LD+     K F
Sbjct: 119 LGTFHSIGVKLLRRHAELVGLSSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 174

Query: 193 YEILEISNDEDI 204
             +++   ++ +
Sbjct: 175 AGMIDTWKNKGL 186


>gi|46907989|ref|YP_014378.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
           F2365]
 gi|46881259|gb|AAT04555.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 733

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|81300977|ref|YP_401185.1| ATP-dependent DNA helicase Rep [Synechococcus elongatus PCC 7942]
 gi|81169858|gb|ABB58198.1| ATP-dependent DNA helicase, Rep family [Synechococcus elongatus PCC
           7942]
          Length = 794

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 23/174 (13%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +SQ  + Q  A +  +    V A AGSGKT  L  R+  LL  +   P  +L +T T 
Sbjct: 4   DFLSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVDPENILAVTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGG 130
            AA EM  R+  +            + ++ ++Q  +P  +     +  L + +  E    
Sbjct: 64  KAAKEMKERLERLF-----------AQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKD 112

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSH-------FAIADEEQSKKLIEEAKKSTL 177
           L + T HA C  I++ F ++     +       F+I DE   + LI+E   + L
Sbjct: 113 LWIGTFHAICARILR-FDIDKYCDPNGRRWTKQFSIFDENDVQGLIKEIVGNQL 165


>gi|325300614|ref|YP_004260531.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
 gi|324320167|gb|ADY38058.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
          Length = 753

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 39/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            ++ +D +++++ E +L  D    + V A AGSGKT +L  ++  LL     P ++L LT
Sbjct: 1   MADFLDGLNESQREAVLYVD--GPSLVIAGAGSGKTRVLTYKIAYLLDQGYEPWSILALT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+   + A                           +AR+L         
Sbjct: 59  FTNKAAREMKERIAGQVGA--------------------------DRARYL--------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+    I++        +S F I D   SK LI+   K  
Sbjct: 84  --WMGTFHSIFSRILRFEAGALGFSSDFTIYDAADSKSLIKSIIKEM 128


>gi|226224362|ref|YP_002758469.1| ATP-dependent DNA helicase [Listeria monocytogenes Clip81459]
 gi|225876824|emb|CAS05533.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 731

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 5   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 63  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 85  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129


>gi|293377660|ref|ZP_06623849.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1]
 gi|292643660|gb|EFF61781.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1]
          Length = 744

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHND--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILASGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|322391963|ref|ZP_08065427.1| exonuclease RexA [Streptococcus peroris ATCC 700780]
 gi|321145189|gb|EFX40586.1| exonuclease RexA [Streptococcus peroris ATCC 700780]
          Length = 1215

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L        L   T T  AA E+ 
Sbjct: 26  TTEQIQAIYSSGQNILVSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELK 85

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                  KI  +     D+   +HL   + + P    + T+ +F
Sbjct: 86  ERLEK------------------KISQQIQETQDLELKKHLGRQLADLPNAA-IGTMDSF 126

Query: 140 CEAIMQQFPLEANITSHFAIAD-EEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            +  + +     N++ +F I + E +   L  E  +    S     +   K  F  +++ 
Sbjct: 127 TQKFLTKHGYLLNLSPNFRILENESEQLLLKNEVFRQVFESHYQGQD---KDNFSRLVKN 183

Query: 199 SNDEDIETLISDIISNRTALKLIF-FFFSYLWRRKIIEKSLW 239
                      D    R  + +I+ F  S    +  +E S  
Sbjct: 184 FAGRS-----KDARGLRKQVYMIYDFLQSTSNPQSWLEASFL 220


>gi|224476962|ref|YP_002634568.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421569|emb|CAL28383.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 731

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
            +  +D ++  +SE +  ++      + A AGSGKT +L  R+  LL      P  +L +
Sbjct: 1   MNALLDNMNTEQSEAVRTTE--GPLLIMAGAGSGKTRVLTHRIAYLLDEKGVSPYNVLAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV +++   +                                      
Sbjct: 59  TFTNKAAREMKERVEKLVGEEAQ------------------------------------- 81

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + + T H+ C  I+++      I  +F I D    K +I++  K 
Sbjct: 82  -AIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKR 127


>gi|47095685|ref|ZP_00233292.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254900736|ref|ZP_05260660.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J0161]
 gi|254913779|ref|ZP_05263791.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818]
 gi|254938166|ref|ZP_05269863.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900]
 gi|47015970|gb|EAL06896.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258610779|gb|EEW23387.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900]
 gi|293591795|gb|EFG00130.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818]
          Length = 733

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|222529276|ref|YP_002573158.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456123|gb|ACM60385.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
          Length = 714

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ++ + +   +Q  A         V A AGSGKT ++  R+  +L    A+P+ +L +T T
Sbjct: 1   MEWLKELNDQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPANILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +++                                      ++   +
Sbjct: 61  NKAADEMKERIKRLVST-------------------------------------QSFSEM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I++        +++F I D +   +L++E     
Sbjct: 84  WVSTFHAACARILRMEAHNIGFSNNFVIFDAQDRNQLLKECFDKL 128


>gi|119493842|ref|ZP_01624409.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106]
 gi|119452434|gb|EAW33623.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106]
          Length = 784

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 19/199 (9%)

Query: 10  HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
            ++T+D +S     Q  A +       V A AGSGKT  L  R+  LL  +  HP  +L 
Sbjct: 1   MTQTVDFLSHLNPSQRQAVEHFCGPMLVVAGAGSGKTRALTYRIANLLRTHRVHPENILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA E+  RV       +  S++    +  K      +    +    +  ++ + 
Sbjct: 61  VTFTNKAAREIKERVE------AIFSEQQAQTQYQKPFSALTSPEQTNLRSQVYRSVSKQ 114

Query: 128 PGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIM 181
              L + T H+ C  I++    ++  E       +F+I DE  ++ L+++     L   +
Sbjct: 115 ---LWMGTFHSLCARILRYDINKYTDEKGRQWQQNFSIFDESDAQSLVKQIVTKELN--L 169

Query: 182 LDNNEELKKAFYEILEISN 200
            D   E +K  Y+I    N
Sbjct: 170 DDKKFEPRKVRYQISNAKN 188


>gi|156564011|ref|YP_001429750.1| PcrA helicase [Bacillus phage 0305phi8-36]
 gi|154622708|gb|ABS83588.1| PcrA helicase [Bacillus phage 0305phi8-36]
          Length = 657

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 81/231 (35%), Gaps = 69/231 (29%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D ++  + E ++ +    S  V A AGSGKT +L +RV  +L     P  +L +T T 
Sbjct: 18  LLDGLNPAQKEAVVKTVKNPS-LVIAGAGSGKTRVLQKRVGYILENGIDPRRILTVTFTN 76

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+   +                            ++A+ ++           
Sbjct: 77  KAATEMKERIGNEVGE--------------------------ARAKKIM----------- 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS----------------- 175
           + T H+     + Q+  EA +  ++ I D E + K+I+E  KS                 
Sbjct: 100 IGTFHSLAVRWLHQYYSEAGLKKNWTIFDSEDTNKVIKELLKSNNMDDSKQNVYATQSRI 159

Query: 176 -------TLASIMLDNNEELKKAFYEILEISNDE-------DIETLISDII 212
                   L        E   K+F  I E   D        D + LI  ++
Sbjct: 160 SNLKNDMILPKDFRKQMEPQDKSFARIYERYQDRMARNNAVDFDDLIMKMV 210


>gi|16803799|ref|NP_465284.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e]
 gi|16411213|emb|CAC99837.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e]
          Length = 731

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 5   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 63  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 85  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129


>gi|169831771|ref|YP_001717753.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638615|gb|ACA60121.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 718

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +D +++    Q  A   P     V A AGSGKT +L  R+  L+ +    P  +L +T T
Sbjct: 7   LDFLTELNPAQAEAVCHPGGPLLVLAGAGSGKTRVLTSRIAYLVRVHRVEPHRILAITFT 66

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                            L
Sbjct: 67  NRAAREMKERVASLVP--------------------------------------HAVDDL 88

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I+++   +   + +F I DE   + +I++  K  
Sbjct: 89  WVMTFHAACLRILRREIEKLGYSKNFVIYDEADQQTVIKDCLKEL 133


>gi|49475840|ref|YP_033881.1| DNA helicase II [Bartonella henselae str. Houston-1]
 gi|49238648|emb|CAF27892.1| DNA helicase II [Bartonella henselae str. Houston-1]
          Length = 778

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 44/198 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q  ++ ++ ++    +Q    +      V A AG+GKT +L  R+  +L +  A P  +L
Sbjct: 38  QYSADYLEKLN--PEQQQAVMNTEGPLLVLAGAGTGKTRVLTTRISHILHSGLASPQQIL 95

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+ E+I                                        
Sbjct: 96  AVTFTNKAAREMKMRIGELIGEIVE----------------------------------- 120

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    I+++     N+ S+F I D +   +L+++     + +  LD+  
Sbjct: 121 --GMPWLGTFHSIGAKILRRHAELVNLKSNFTILDSDDVTRLLKQ----LIQAEGLDDKR 174

Query: 187 ELKKAFYEILEISNDEDI 204
              +    +++   ++ +
Sbjct: 175 WPARNLAIMIDSWKNQGL 192


>gi|314934070|ref|ZP_07841433.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87]
 gi|313653181|gb|EFS16940.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87]
          Length = 731

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +    +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +++   + +                                      + + T 
Sbjct: 67  EMKERVEQLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|261207461|ref|ZP_05922147.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6]
 gi|260078352|gb|EEW66057.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6]
          Length = 747

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 8   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 66  FTNKAAKEMKERVNAILASGGE-------------------------------------- 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 88  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134


>gi|47092912|ref|ZP_00230694.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
           H7858]
 gi|254825996|ref|ZP_05230997.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194]
 gi|254932795|ref|ZP_05266154.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262]
 gi|255521959|ref|ZP_05389196.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-175]
 gi|47018738|gb|EAL09489.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
           H7858]
 gi|293584348|gb|EFF96380.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262]
 gi|293595235|gb|EFG02996.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194]
 gi|328466511|gb|EGF37654.1| ATP-dependent DNA helicase [Listeria monocytogenes 1816]
          Length = 733

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|254853669|ref|ZP_05243017.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503]
 gi|300765955|ref|ZP_07075927.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017]
 gi|258607048|gb|EEW19656.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503]
 gi|300513341|gb|EFK40416.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017]
          Length = 733

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|301165556|emb|CBW25127.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
          Length = 752

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 39/158 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +DL    + ++           + A AGSGKT  LV R+  LL   +  P  +L LT + 
Sbjct: 4   MDLSGLNEQQRKAVLRTDGPVMILAGAGSGKTKTLVTRISYLLEELHVSPYQVLALTFSN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++ A                                        G L+
Sbjct: 64  KAAREMRDRIGSMVEADV--------------------------------------GALQ 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           + T HAFC  I++       ++ +F I D  + K +++
Sbjct: 86  ITTFHAFCARILRSEANYLGLSRNFTIYDTSEQKAVVK 123


>gi|289761084|ref|ZP_06520462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM
           1503]
 gi|289708590|gb|EFD72606.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM
           1503]
          Length = 702

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             KAR+           
Sbjct: 76  TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|217964093|ref|YP_002349771.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23]
 gi|217333363|gb|ACK39157.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23]
          Length = 731

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 5   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 63  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 85  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129


>gi|229119951|ref|ZP_04249206.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201]
 gi|228663417|gb|EEL19002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201]
          Length = 751

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMNMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|163741587|ref|ZP_02148978.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10]
 gi|161385321|gb|EDQ09699.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10]
          Length = 786

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  +   +   +      + A AG+GKT  L  R++ LL    A P+ +L +T T
Sbjct: 27  YLDGLNPAQRAAVECLE--GPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                          G  
Sbjct: 85  NKAAREMKERVAGMLGQAVE-------------------------------------GMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  ++++      + S+F I D +   +L+++     + +  +D+     + 
Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIKAEGIDDKRWPARM 163

Query: 192 FYEILEISNDEDI 204
              +++   +  +
Sbjct: 164 LAGVIDDWKNRAL 176


>gi|157149814|ref|YP_001450693.1| first chain of major exonuclease RexA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|251764541|sp|A8AY33|ADDA_STRGC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|157074608|gb|ABV09291.1| first chain of major exonuclease RexA [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 1216

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L       L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVSIQELFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + ++     S +                    + +  L   L       + T+ +F
Sbjct: 89  ERLEKELSKVLKESQD-------------------EELKQHLAKQLAAIATADIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     +  +F I     +   L  E  +           +E+   F ++++ 
Sbjct: 130 TQKLLNKYGYLLGLAPNFRILQSASEQTMLQNEVFQQLFEQYYTGEQKEI---FEKLVKN 186

Query: 199 SNDEDIETLISDIISNRTALKLIF-FFFSYLWRRKIIEKSLW 239
              +       +I   R  +  I+ F  S    ++ ++    
Sbjct: 187 FTGKK-----KNISGFRQQVYAIYQFLQSTSNPQRWLQDFFL 223


>gi|88811691|ref|ZP_01126945.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus
           mobilis Nb-231]
 gi|88791082|gb|EAR22195.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus
           mobilis Nb-231]
          Length = 1117

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 14/209 (6%)

Query: 10  HSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            SE ID       ++L A     S   V A AGSGKT ++  R++  L     P  +  +
Sbjct: 1   MSELID-----HRQRLRALTAIDSTLLVEAGAGSGKTALMAGRIVYSLAQGIEPGRIAAI 55

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AA ++  R+   +         +              +  ++ AR  L       
Sbjct: 56  TFTELAAGQLLIRIRGFLERALRGETPVELQAAFPKGLSDAERIRLTTARERLAE----- 110

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-E 187
             L   TIH FC+ +++ +P+EA+I    AI D   ++   ++  ++ L   +   +E +
Sbjct: 111 --LTATTIHGFCQQLIRPYPVEADIDPGAAIMDAPAAELAWQDLLEAFLRERLEAADEGD 168

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRT 216
              AF E    ++  +I+ +   +  +R+
Sbjct: 169 PLVAFIEAAGANSAAEIDRIARFLRRSRS 197


>gi|224499522|ref|ZP_03667871.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes Finland
           1988]
 gi|224503315|ref|ZP_03671622.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-561]
          Length = 733

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|302343284|ref|YP_003807813.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301639897|gb|ADK85219.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 1159

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 33/186 (17%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKAAAAEMSHRVLEI 85
            R+  V+A AG+GKT  LV+  + LL  N       P  ++ +T T+ AAAEM  RV++ 
Sbjct: 9   ERNYCVTAGAGAGKTSCLVKAYVGLLAGNDQRPPLAPRQIVAITFTEKAAAEMRGRVMDR 68

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           + A +       +  I +++                           + TIH FC A+++
Sbjct: 69  VAALAAKEGGRWAEIINQLEWSP------------------------ISTIHGFCAALLR 104

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           ++     +   FAI D +   +++ EA    L   M  ++  L +           +DIE
Sbjct: 105 EYGSLLGLDPDFAILDGQAFDEMLSEAVAEVLRQAMDHDDPALGRLLMH----HGMDDIE 160

Query: 206 TLISDI 211
             +  +
Sbjct: 161 AKLRAL 166


>gi|240850877|ref|YP_002972277.1| DNA helicase II [Bartonella grahamii as4aup]
 gi|240268000|gb|ACS51588.1| DNA helicase II [Bartonella grahamii as4aup]
          Length = 779

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 43/203 (21%)

Query: 4   HNSFQEHSETIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           H   ++ S   D + Q    +Q    +      V A AG+GKT +L  R+  +L +  A 
Sbjct: 30  HTLKEQKSYNTDYLKQLNPEQQQAVMNTEGPLLVLAGAGTGKTRVLTTRISHILRSGLAS 89

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P  +L +T T  AA EM  R+ E+I                                   
Sbjct: 90  PQQILAVTFTNKAAREMKTRIGELIGGVVE------------------------------ 119

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                  G   + T H+    I+++      +  +F I D +   +L+++     + +  
Sbjct: 120 -------GMPWLGTFHSTGAKILRRHAELVGLKRNFTILDSDDVLRLLKQ----LIQAEG 168

Query: 182 LDNNEELKKAFYEILEISNDEDI 204
           LD+     +    +++   ++ +
Sbjct: 169 LDDKRWPARNLAMMIDSWKNQGL 191


>gi|227551669|ref|ZP_03981718.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330]
 gi|257895731|ref|ZP_05675384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12]
 gi|227179232|gb|EEI60204.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330]
 gi|257832296|gb|EEV58717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12]
          Length = 747

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 8   AELLNGMNPRQKEAVLHND--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 66  FTNKAAKEMKERVNAILASGGE-------------------------------------- 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 88  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134


>gi|116630137|ref|YP_815309.1| superfamily I DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095719|gb|ABJ60871.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri ATCC 33323]
          Length = 757

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 40/178 (22%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA- 58
           M   +  +E      ++++   +Q  A         V A AGSGKT +L +R+  L+   
Sbjct: 1   MFRLSGKREAMSEETILAELNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEK 60

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
              P  +L +T T  AA EM  RV +++   +                            
Sbjct: 61  GVAPWNVLAITFTNKAATEMKERVQKLLGPAA---------------------------- 92

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                       + + T HA C  I+++   +   +++F+IAD  +   LI+  +K  
Sbjct: 93  ----------DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 140


>gi|313683463|ref|YP_004061201.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313156323|gb|ADR35001.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 900

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            A+AGSGKT  LV R L LL    +PS+++ LT T  AA EM  R++  +      S+  
Sbjct: 10  EASAGSGKTFNLVVRYLSLLFMGENPSSIIALTFTNKAANEMLERIILTLEELPKRSELS 69

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
             A ++ I   K     + +   +L   L     +++ TI  F   I+++F L A +   
Sbjct: 70  QIARLSGIDEAKI----LEERPKVLARFLR--SDIQISTIDKFFGRILRKFALNAGLMPT 123

Query: 157 FAIADEEQSKKLIEEAKKST 176
           F     +    L+E      
Sbjct: 124 FKTIQNQHETALLERFLNEV 143


>gi|242309299|ref|ZP_04808454.1| helicase [Helicobacter pullorum MIT 98-5489]
 gi|239524340|gb|EEQ64206.1| helicase [Helicobacter pullorum MIT 98-5489]
          Length = 921

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA---WS 90
             ++A+AGSGKT+ LV R L LL   A PS +L LT TK AA EM  R+ + I     + 
Sbjct: 6   LCLNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIAKSIGEIYQYR 65

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           +  D I   E   I+ K        K   +  + L+    LK+ TI +F + I++ F   
Sbjct: 66  NDIDYINKLECISIKDKNDFGKLQEKIHQIYHSFLK--EDLKITTIDSFFQRILKSFCWY 123

Query: 151 ANITSHFAIADEEQSKKL 168
             +   F I  +++ K +
Sbjct: 124 VGVEYDFEIQSDDREKII 141


>gi|206968237|ref|ZP_03229193.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134]
 gi|228950847|ref|ZP_04112970.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068047|ref|ZP_04201355.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185]
 gi|229077650|ref|ZP_04210280.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2]
 gi|229188562|ref|ZP_04315601.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876]
 gi|206737157|gb|EDZ54304.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134]
 gi|228594751|gb|EEK52531.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876]
 gi|228705591|gb|EEL57947.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2]
 gi|228715055|gb|EEL66922.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185]
 gi|228808776|gb|EEM55272.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 753

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|289550376|ref|YP_003471280.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179908|gb|ADC87153.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 746

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 44/189 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++    EQ  A         + A AGSGKT +L  R+  LL      P  +L +T T  
Sbjct: 4   LVANMNDEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAKEMKQRVEQLVGEEASV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++      I  +F I D    K +I    K  L +  +D+ +   + F 
Sbjct: 86  STFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVI----KDVLKNENIDSKKFEPRMFI 141

Query: 194 EILEISNDE 202
             +    +E
Sbjct: 142 SAISNLKNE 150


>gi|237741609|ref|ZP_04572090.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13]
 gi|229429257|gb|EEO39469.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13]
          Length = 735

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
              ++ ++  + E   AS    S  + A AGSGKT  +  R+  ++      P ++L +T
Sbjct: 1   MNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++   +                                       
Sbjct: 59  FTNKAAKEMRERVEDLVGDIAKAC------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
              + T H+F   +++ +  E    S+F I D +  K++++   K
Sbjct: 83  --TISTFHSFGMRLLRMYAKEVGYNSNFTIYDTDDQKRIVKAILK 125


>gi|225388641|ref|ZP_03758365.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme
           DSM 15981]
 gi|225045317|gb|EEG55563.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme
           DSM 15981]
          Length = 769

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 39/155 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q           V A AGSGKT +L  RV  L+     +P  ++ +T T  AA EM  R
Sbjct: 2   QQEAVFCTEGPLLVLAGAGSGKTRVLTHRVAYLIEEKEVNPWNIMAITFTNKAAGEMRER 61

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V +++   +                                        + V T H+ C 
Sbjct: 62  VDKLVGFGAE--------------------------------------SIWVSTFHSSCV 83

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            I+++       ++ F+I D +  + L+++  K+ 
Sbjct: 84  RILRRHIEALGYSTSFSIYDTDDQRTLMKQVFKTL 118


>gi|284045042|ref|YP_003395382.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283949263|gb|ADB52007.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 746

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 41/174 (23%)

Query: 6   SFQEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
           S   H   +D  L    + ++           + A AGSGKT +L  R+  L+    A P
Sbjct: 2   SANAHVADLDALLAGLNEPQREAVVHGEGPLLILAGAGSGKTRVLTHRIAYLVGTGQARP 61

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T  AA EM  RV  ++   +                                
Sbjct: 62  DEILAITFTNKAAQEMRERVEMLVGRRTR------------------------------- 90

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   + V T H+ C  +++        T  F I D+  +++L++ A +  
Sbjct: 91  -------AMWVMTFHSACARMLRADAHRLGYTRQFTIYDQSDARRLVKRAIEEL 137


>gi|290893415|ref|ZP_06556400.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071]
 gi|290557066|gb|EFD90595.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071]
 gi|307571339|emb|CAR84518.1| ATP-dependent DNA helicase [Listeria monocytogenes L99]
          Length = 733

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|229095008|ref|ZP_04226004.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29]
 gi|229113961|ref|ZP_04243387.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3]
 gi|228669420|gb|EEL24836.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3]
 gi|228688338|gb|EEL42220.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29]
          Length = 749

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|294618098|ref|ZP_06697695.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679]
 gi|291595670|gb|EFF26966.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679]
          Length = 744

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILASGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|154487471|ref|ZP_02028878.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
           L2-32]
 gi|154083989|gb|EDN83034.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
           L2-32]
          Length = 896

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 40/164 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            I+ ++  + E +      ++  + A AGSGKT +L +R+  LL      S++L +T T 
Sbjct: 28  LIEGLNPQQEEAVKYY--GQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTN 85

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R++ ++   +                                        + 
Sbjct: 86  KAAAEMRERLVTLVGPEAEH--------------------------------------MW 107

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   E  + S F+I D   S++L++      
Sbjct: 108 ISTFHSACVRILRRDGKEIGLKSGFSIYDTADSERLVKLIAADL 151


>gi|323490411|ref|ZP_08095623.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2]
 gi|323395910|gb|EGA88744.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2]
          Length = 737

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 78/217 (35%), Gaps = 45/217 (20%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L++    EQ  A         + A AGSGKT +L  R+  L+L    +PS +L +T T 
Sbjct: 7   NLLNGMNPEQAEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVLEKQVYPSNILAITFTN 66

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM +R+  ++                                        T   + 
Sbjct: 67  KAAREMRNRIDGLLGHG-------------------------------------TGQRMW 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H+ C  I+++   +  ++ +F+I D      +I    K+ L    LD  +   +  
Sbjct: 90  ASTFHSMCVRILRRDIDKLGMSKNFSILDTTDQLTVI----KNVLKQQNLDPKKYEPRTM 145

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLW 229
              +  S +E I+   +   ++           S ++
Sbjct: 146 LNAISSSKNECIDA--AQFAADMNQFNPYEKTVSDVY 180


>gi|320161958|ref|YP_004175183.1| ATP-dependent DNA helicase PcrA [Anaerolinea thermophila UNI-1]
 gi|319995812|dbj|BAJ64583.1| ATP-dependent DNA helicase PcrA [Anaerolinea thermophila UNI-1]
          Length = 737

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D +     +Q  A   +     V A  GSGKT +L  R+  LL      P  +L +T T
Sbjct: 1   MDSLEHLNPQQRAAVTASAGPVLVLAGPGSGKTRVLTFRIGYLLSQLGVAPHHILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                        +  G+
Sbjct: 61  NKAAREMQSRVEKLLG--------------------------------------HSLQGM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T HA C  I+++      + ++F I DE+  + LI+ A +  
Sbjct: 83  WLGTFHAICARILRREQQYLPLDANFVIFDEDDQQALIKRALRDL 127


>gi|227554836|ref|ZP_03984883.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis
           HH22]
 gi|227176036|gb|EEI57008.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis
           HH22]
          Length = 405

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 44/194 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILE 197
            C  I+++   +     +F I D  + K L+    K  L  + +D+ + + +     I  
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLM----KRILNDLNIDSKKYDPRSILGTISN 188

Query: 198 ISNDEDIETLISDI 211
             N+      ++++
Sbjct: 189 AKNELQTPEKVAEM 202


>gi|257898302|ref|ZP_05677955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15]
 gi|257836214|gb|EEV61288.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15]
          Length = 748

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 8   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 66  FTNKAAKEMKERVNAILASGGE-------------------------------------- 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 88  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134


>gi|228956727|ref|ZP_04118513.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802915|gb|EEM49747.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 761

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|329117216|ref|ZP_08245933.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD
           2020]
 gi|326907621|gb|EGE54535.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD
           2020]
          Length = 1212

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 85/221 (38%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R++  LL       +   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTSGQNVLVSASAGSGKTFVMVERIIDKLLRGVAIEEMFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +      SD+                    + +  L   L++     + T+ +F
Sbjct: 89  ERLEKKLVEAIKASDDY-------------------EMKSFLNYQLQSIHIADIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EI 198
            + ++ ++     I   + I  ++  + +I++     L  I + ++E     F  ++   
Sbjct: 130 TQKLISEYGYTLGIAPKYRIMQDKSEQDVIKDIIYKDLFEIYMASDETGD--FLRLVKNF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           S +        +I++     K+  F  S       +++   
Sbjct: 188 SGNRKDSNGFKEIVN-----KVYTFSQSTENPLLWLDEVFL 223


>gi|325860071|ref|ZP_08173197.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A]
 gi|325482356|gb|EGC85363.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A]
          Length = 842

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 42/188 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +++S     Q  A +  T  + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 9   EILSALNESQRAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILALTFTNK 68

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  I TA                           +A+ L +           
Sbjct: 69  AAREMKERIARITTAG--------------------------EAQRLYM----------- 91

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I+++       + +F I DE  S+ LI    KS + ++ LD       + +
Sbjct: 92  GTFHSIFSRILRREGQAVGFSGNFTIYDETDSRSLI----KSIVKALGLDEKAYKPSSVH 147

Query: 194 EILEISND 201
             + ++ +
Sbjct: 148 SFISMAKN 155


>gi|304317509|ref|YP_003852654.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779011|gb|ADL69570.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 716

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 53/205 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
              +D ++  + E ++ ++      + A AGSGKT +L  R+  L+      P+ +L +T
Sbjct: 1   MNILDKLNDRQKEAVVTTE--GPLLILAGAGSGKTRVLTHRIAYLIKEKRVSPANILAIT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++                                          G
Sbjct: 59  FTNKAAQEMKDRVESLLGYV---------------------------------------G 79

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LA 178
            + V T H+ C  I+++   +     +F I D +  K L+ +  K             + 
Sbjct: 80  DIWVSTFHSACVRILRRDIEKIGYDKNFVIYDTQDQKSLVSDCIKELDLNEKQYTPKSML 139

Query: 179 SIMLDNNEELKKAFYEILEISNDED 203
           S +    +++      +LE  ND  
Sbjct: 140 SAISKAKDKMISPDEYLLEFGNDYR 164


>gi|261409570|ref|YP_003245811.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10]
 gi|261286033|gb|ACX68004.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10]
          Length = 776

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 45/192 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + +  ++  + + + A+D      + A AGSGKT +L  R+  L+    A P ++L +T 
Sbjct: 8   DAVRRLNPQQRQAVEATD--GPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWSILAITF 65

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV +++                                            
Sbjct: 66  TNKAAREMQERVSKLVGREGQ--------------------------------------D 87

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++       TS+F+I D      +I    ++ +    +D  +   K
Sbjct: 88  IWVSTFHSMCVRILRRDIERIGFTSNFSILDSTDQLSVI----RNVMKQHNIDPKKFEPK 143

Query: 191 AFYEILEISNDE 202
           A    +  + +E
Sbjct: 144 AVQAAMSAAKNE 155


>gi|118443009|ref|YP_878906.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT]
 gi|118133465|gb|ABK60509.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT]
          Length = 760

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71
           +DL      EQ   A+       V A AGSGKT +L  R+  ++     P   +L +T T
Sbjct: 1   MDLKKLLNKEQYEAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ ++++                                           +
Sbjct: 61  NKAAGEMKDRIKKLVS--------------------------------------NNIDSM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +FAI D    K L+++  K  
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYNKNFAIYDSTDQKNLVKQCMKEL 127


>gi|323463999|gb|ADX76152.1| ATP-dependent DNA helicase PcrA [Staphylococcus pseudintermedius
           ED99]
          Length = 731

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 47/223 (21%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +  K +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  ++   + +                                      + + T 
Sbjct: 67  EMKERVQALVGEEAEV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+ C  I+++      I  +F I D    K +I++  K      +     E +    EI 
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKR---ENIDPKKYEPRIFIGEIS 145

Query: 197 EISND----EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++ ND       E    D  S R    +   +   L R + ++
Sbjct: 146 KLKNDLLTPAKAEAEADDFYS-RMVATVYKGYQQQLVRNQALD 187


>gi|190892554|ref|YP_001979096.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652]
 gi|190697833|gb|ACE91918.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652]
          Length = 832

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ  A +       V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 60  DYLAGLNPEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 119

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 120 KAAREMKERIALLVGGAVE-------------------------------------GMPW 142

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++      ++S F I D +   +LI++     + +  LD+     K F
Sbjct: 143 LGTFHSIGVKLLRRHAELVGLSSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 198

Query: 193 YEILEISNDEDI 204
             +++   ++ +
Sbjct: 199 AGMIDTWKNKGL 210


>gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
 gi|183177849|gb|ACC42959.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
          Length = 769

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 85/235 (36%), Gaps = 44/235 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           +  + ++ ++  + + ++         + A AGSGKT +L +R+  L+ A       +L 
Sbjct: 7   DADQLLEGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLIAARGVGVGQILA 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV+ ++   +                                     
Sbjct: 65  ITFTNKAAAEMRERVVSLVGGRAKY----------------------------------- 89

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
              + V T H+ C  I++        + S+F+I D + S++L++   +     I   +  
Sbjct: 90  ---MWVSTFHSTCVRILRNQAALIKGLNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPR 146

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            L  A   +     D D    +SD+  +   L          ++R++   +    
Sbjct: 147 LLANAISNLKNELIDPD--RAVSDLSEDSDDLARTVASVYAEYQRRLRAANALDF 199


>gi|318042807|ref|ZP_07974763.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CB0101]
          Length = 802

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 28/216 (12%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
            ++     Q  A D       V A AGSGKT  L  R+  L+      P+ LL +T T  
Sbjct: 5   FLAGLNDAQRRAVDHHVGPLLVVAGAGSGKTRALTHRIAHLIGQHGVDPAELLAVTFTNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++        ++  ++  +     P          +   +++    L +
Sbjct: 65  AAREMKERLELLLA------QKLAQSQFGQPWSTLPAVEQRQLRSRIYRDVIKD---LWI 115

Query: 134 QTIHAFCEAIMQQFPLEAN--ITS-------HFAIADEEQSKKLIEEAKKSTLASIMLDN 184
            T HA    +++    + +             F+I DE  ++ L++E        + LD 
Sbjct: 116 GTFHALFARLLR---FDIDKFRDPEGLTWTRQFSIYDEGDTQSLVKEIVTQ---ELGLDP 169

Query: 185 NEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218
                K     +  + ++    E L +D    R  L
Sbjct: 170 KRFEPKKVRWAISNAKNQGWIPEQLEADAGGQRGKL 205


>gi|254832504|ref|ZP_05237159.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes 10403S]
          Length = 733

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|229028144|ref|ZP_04184286.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271]
 gi|228733162|gb|EEL84002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271]
          Length = 751

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 40/168 (23%)

Query: 10  HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
            S+T  L++    +Q  A         + A AGSGKT +L  R+  LL      P  +L 
Sbjct: 5   MSKTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLA 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++   +                                     
Sbjct: 65  ITFTNKAAREMRERIDTLVGPEAE------------------------------------ 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  --DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|326798725|ref|YP_004316544.1| UvrD/REP helicase [Sphingobacterium sp. 21]
 gi|326549489|gb|ADZ77874.1| UvrD/REP helicase [Sphingobacterium sp. 21]
          Length = 1114

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 13/191 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AGSGKT  L    + LL  +  H S +L +T T  A AEM HR+L +I   +  S
Sbjct: 9   ILKASAGSGKTFSLAAHYISLLFTSKVHFSEILAVTFTNKATAEMKHRILTVIEGLALGS 68

Query: 94  D--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           +  E     I +   +   +    KA  +   IL       + TI  F + I++ F  E 
Sbjct: 69  EAVESYRNIILEAHPQLSRQDIQQKAMEVYRQILHNYSRFAISTIDGFYQKIIRSFSFEL 128

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF-YEILEISNDED------I 204
            + + + +  E  S K+ ++     L  ++ D ++ L+    Y   +I ND +      +
Sbjct: 129 GLNAAYRL--EMNSDKVKQDLVVR-LNKLLNDRDDLLQWIINYARKQIENDRNWNYTTVL 185

Query: 205 ETLISDIISNR 215
           + L  ++   R
Sbjct: 186 KKLADELFKER 196


>gi|319892948|ref|YP_004149823.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162644|gb|ADV06187.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 731

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 47/223 (21%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +  K +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  ++   + +                                      + + T 
Sbjct: 67  EMKERVQALVGEEAEV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+ C  I+++      I  +F I D    K +I++  K      +     E +    EI 
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKR---ENIDPKKYEPRIFIGEIS 145

Query: 197 EISND----EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++ ND       E    D  S R    +   +   L R + ++
Sbjct: 146 KLKNDLLTPAKAEAEADDFYS-RMVATVYKGYQQQLVRNQALD 187


>gi|228919227|ref|ZP_04082597.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840334|gb|EEM85605.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 753

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|220906933|ref|YP_002482244.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425]
 gi|219863544|gb|ACL43883.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425]
          Length = 797

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 18/169 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S   S++           V A AGSGKT  L  R+  L+L +   P  +L +T T  AA 
Sbjct: 10  SLNPSQRQAVKHYCGPLLVVAGAGSGKTRALTYRIANLVLTHRIAPENILAVTFTNKAAR 69

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ ++      L     S    K   +   ++       +  TI+     L + T 
Sbjct: 70  EMKERIKKLFAEQQALQQYGQSIASLKPFERNRLET------QVYKTIIRD---LWIGTF 120

Query: 137 HAFCEAIMQQFPLEANIT-------SHFAIADEEQSKKLIEEAKKSTLA 178
           H+ C  I++ F +E           S+F+I DE   + LI++   + L 
Sbjct: 121 HSLCARILR-FEIEKYRDSKGRQWQSNFSIFDESDVQSLIKDIVVNQLQ 168


>gi|260576875|ref|ZP_05844858.1| UvrD/REP helicase [Rhodobacter sp. SW2]
 gi|259020912|gb|EEW24225.1| UvrD/REP helicase [Rhodobacter sp. SW2]
          Length = 850

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 44/191 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +     EQ  A   P     + A AG+GKT  L  R++ LL    A P+ +L +T T  
Sbjct: 28  YLDDLNPEQRAAVLAPDGPVLMLAGAGTGKTKALTARIVHLLTTGKARPNEILAVTFTNK 87

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++     +                                        +
Sbjct: 88  AAREMKDRVGRMLGQVEGMP--------------------------------------WM 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I+++      + S+F I D +   +L+++     + +  +D      +   
Sbjct: 110 GTFHSISVKILRRHAELVGLKSNFTILDTDDQIRLLKQ----LIVAENIDEKRWPARLLA 165

Query: 194 EILEISNDEDI 204
            +++   +   
Sbjct: 166 GLIDSWKNRAW 176


>gi|218231540|ref|YP_002365134.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264]
 gi|218159497|gb|ACK59489.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264]
          Length = 753

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|206974372|ref|ZP_03235289.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97]
 gi|217957863|ref|YP_002336407.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187]
 gi|206747612|gb|EDZ59002.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97]
 gi|217067002|gb|ACJ81252.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187]
          Length = 751

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|297564148|ref|YP_003683121.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848597|gb|ADH70615.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 781

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 38/155 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++   +       + A AGSGKT +L  R+  L+ A    P  +L +T T  AAAEM  R
Sbjct: 15  QRDAVTHSGSPLLIVAGAGSGKTRVLTHRIAHLMAARGVRPGEILAITFTNKAAAEMRER 74

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  ++                                      +     +   T H+ C 
Sbjct: 75  IQALLG-------------------------------------VRAANSMWTMTFHSACV 97

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            I+++        S F I D   S +L++   K  
Sbjct: 98  RILRREAARLGYPSSFTIYDSADSARLMQLVCKEM 132


>gi|52144943|ref|YP_081887.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|229154058|ref|ZP_04282183.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342]
 gi|51978412|gb|AAU19962.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|228629338|gb|EEK86040.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342]
          Length = 751

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|169335318|ref|ZP_02862511.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258056|gb|EDS72022.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM
           17244]
          Length = 741

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
            + + ++++ + E +   D      + A AGSGKT  ++ R+  ++    A P  +L LT
Sbjct: 1   MDLLSMLNEKQQEAVTCVD--GPLLILAGAGSGKTRTIIHRIAYIIENGYAKPWEILALT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  +   ++                                       
Sbjct: 59  FTNKAAGEMRERIDSMGIPFT--------------------------------------S 80

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + + T H+ C  I++        TS+F+I D++ +K++++   K  
Sbjct: 81  DIWMGTFHSICARILRIEGHNLGFTSNFSIYDDDDTKRVVKSILKDL 127


>gi|89055268|ref|YP_510719.1| ATP-dependent DNA helicase Rep [Jannaschia sp. CCS1]
 gi|88864817|gb|ABD55694.1| ATP-dependent DNA helicase, Rep family [Jannaschia sp. CCS1]
          Length = 817

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +      Q+ A +       + A AG+GKT  L  R+  L+    A P+ +L +T T  
Sbjct: 30  YMDGLNPAQIAAVNQLDGPVLMLAGAGTGKTRALTARIAHLMSTGTARPNEILAVTFTNK 89

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   +                                      G   +
Sbjct: 90  AAREMKTRVGHLLGQPAE-------------------------------------GMPWL 112

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T HA C  ++++    A + S+F I D +   +L+++     + +  +D+     +A  
Sbjct: 113 GTFHAICVKLLRRHAELAGLKSNFTILDTDDQTRLMKQ----LIIAEEIDDKRWPARALG 168

Query: 194 EILEISNDEDI 204
            I++   +  +
Sbjct: 169 SIIDGWKNRAL 179


>gi|212638095|ref|YP_002314615.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1]
 gi|212559575|gb|ACJ32630.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1]
          Length = 726

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 45/191 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ +++ + E +  ++      + A AGSGKT +L  R+  L+      P  +L +T T
Sbjct: 13  LLEGLNEKQKEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLMAEKGVAPWNILAITFT 70

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  I+   +                                        +
Sbjct: 71  NKAAREMKERVERIVGKQAE--------------------------------------DI 92

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++      I ++F+I D      ++    K  L    +D  +   +A
Sbjct: 93  WISTFHSMCVRILRRDIDRIGIHANFSILDPTDQLSVL----KHILKDRNIDPKKYDPRA 148

Query: 192 FYEILEISNDE 202
               +  + ++
Sbjct: 149 LLGAISSAKND 159


>gi|315660158|ref|ZP_07913015.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590]
 gi|315494839|gb|EFU83177.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590]
          Length = 730

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 44/189 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++    EQ  A         + A AGSGKT +L  R+  LL      P  +L +T T  
Sbjct: 4   LVANMNDEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAKEMKQRVEQLVGEEASV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++      I  +F I D    K +I    K  L +  +D+ +   + F 
Sbjct: 86  STFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVI----KDVLKNENIDSKKFEPRMFI 141

Query: 194 EILEISNDE 202
             +    +E
Sbjct: 142 SAISNLKNE 150


>gi|260494743|ref|ZP_05814873.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33]
 gi|260197905|gb|EEW95422.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33]
          Length = 737

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           +   ++ ++  + E   AS    S  + A AGSGKT  +  R+  ++      P ++L +
Sbjct: 2   NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAV 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV E++   +                                      
Sbjct: 60  TFTNKAAKEMRERVEELVGDIAKAC----------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               + T H+F   +++ +  E    S+F I D +  K++++   K
Sbjct: 85  ---TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 127


>gi|253680774|ref|ZP_04861577.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873]
 gi|253562623|gb|EES92069.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873]
          Length = 761

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71
           +DL S    EQ   A+       V A AGSGKT +L  R+  ++     P   +L +T T
Sbjct: 1   MDLKSLLNKEQYKAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ ++++                                       +   +
Sbjct: 61  NKAAGEMKDRIKKLVS--------------------------------------NSIDSM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +   + +FAI D    K L+++  K  
Sbjct: 83  WVSTFHSCCVRILRREIDKLGYSKNFAIYDSSDQKNLVKQCMKEL 127


>gi|238060999|ref|ZP_04605708.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149]
 gi|237882810|gb|EEP71638.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149]
          Length = 799

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 39/155 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++           + A AGSGKT +L  R+  LL A + HP  ++ +T T  AA EM  R
Sbjct: 43  QRDAVVHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIAITFTNKAAGEMKER 102

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V +++   + L                                      + V T H+ C 
Sbjct: 103 VTQLVGPRARL--------------------------------------MWVSTFHSACV 124

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            I++     A + S F+I D + S++L++   +  
Sbjct: 125 RILRAEHEHAGLKSSFSIYDADDSRRLMQLVAREL 159


>gi|149916945|ref|ZP_01905446.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis
           pacifica SIR-1]
 gi|149822223|gb|EDM81614.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis
           pacifica SIR-1]
          Length = 1027

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 16/193 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHR 81
             +  ++A AG+GKTH LV   L L           A   P+ +  +T T+ AA E+  R
Sbjct: 24  DANLVLAAGAGAGKTHALVTVALGLYAGTPGEAGGRAPLEPTEVWAVTFTEKAARELRQR 83

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++   +A +   +  L+ E   +      +    + R +L  +   P    + T H+ C 
Sbjct: 84  IVARASALARDPEGALADEPELVAMLGDARPSAGRWRAILEQLPLAP----IGTFHSLCA 139

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++ + +EA +   F + +E  + +L++      L   + D +   + A   +      
Sbjct: 140 QVLRSYAVEAGVDPSFEVLEENGAAELLDGVLDEVLLRELEDPDSHTRAAARAL---GGP 196

Query: 202 EDIETLISDIISN 214
           E + T +  + + 
Sbjct: 197 EQLRTALRRLHAK 209


>gi|30018548|ref|NP_830179.1| DNA helicase II [Bacillus cereus ATCC 14579]
 gi|229042192|ref|ZP_04189946.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676]
 gi|229107966|ref|ZP_04237593.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15]
 gi|229125791|ref|ZP_04254817.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4]
 gi|229143089|ref|ZP_04271522.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24]
 gi|229148694|ref|ZP_04276944.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550]
 gi|29894089|gb|AAP07380.1| DNA helicase II [Bacillus cereus ATCC 14579]
 gi|228634702|gb|EEK91281.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550]
 gi|228640362|gb|EEK96759.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24]
 gi|228657648|gb|EEL13460.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4]
 gi|228675469|gb|EEL30686.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15]
 gi|228727127|gb|EEL78330.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676]
          Length = 753

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|229089419|ref|ZP_04220690.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42]
 gi|228693896|gb|EEL47588.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42]
          Length = 751

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|227548288|ref|ZP_03978337.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079606|gb|EEI17569.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 764

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 41/164 (25%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           DL+     +Q  A         + A AGSGKT +L +R+  LL   A  P  +L +T T 
Sbjct: 4   DLVLGLNPQQEAAVKHSGGPLLIVAGAGSGKTAVLTRRIAYLLQERAVAPWQILAITFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV  ++   +                                        + 
Sbjct: 64  KAAAEMKERVANLVGPEAQ--------------------------------------RMW 85

Query: 133 VQTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+ C  I++Q   L A + ++F+I D + S++L+    K 
Sbjct: 86  VATFHSVCVRILRQQAQLVAGLNTNFSIYDSDDSRRLLSMIAKD 129


>gi|196045338|ref|ZP_03112570.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108]
 gi|196023922|gb|EDX62597.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108]
          Length = 753

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|118476054|ref|YP_893205.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415279|gb|ABK83698.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
          Length = 753

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|75759917|ref|ZP_00739988.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218895412|ref|YP_002443823.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842]
 gi|74492584|gb|EAO55729.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218541975|gb|ACK94369.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842]
          Length = 753

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|294790788|ref|ZP_06755946.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304]
 gi|294458685|gb|EFG27038.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304]
          Length = 885

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++Q ++E +    P     + A AGSGKT +L +R+   L    A+PS +L +T T
Sbjct: 37  LLEGLNQQQAEAVRYQGPA--LLIGAGAGSGKTRVLTRRIAWALSQWGAYPSQILAITFT 94

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++   +                                        +
Sbjct: 95  NKAAREMKERLATLVGPVA--------------------------------------DRM 116

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +  + S F+I D    ++L++   +  
Sbjct: 117 WVSTFHSACVRILRRHGKDIGLQSGFSIYDTADCQRLVKLICQDL 161


>gi|119717815|ref|YP_924780.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614]
 gi|119538476|gb|ABL83093.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614]
          Length = 797

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 48/232 (20%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E ++ +++   ++           V A AGSGKT +L +R+  L+    AHP ++L +T 
Sbjct: 21  ELLEGLNE--PQRAAVVHEGAPLLVVAGAGSGKTRVLTRRIAWLISERKAHPGSILAITF 78

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV +++   + +                                      
Sbjct: 79  TNKAAAEMKERVEDLVGRRARI-------------------------------------- 100

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++   +    S+F+I D    K+L+           +     +   
Sbjct: 101 MWVSTFHSACVRILRKEVDKLGFKSNFSIYDAADQKRLMTLVCNDL---DLDPKRYQPGA 157

Query: 191 AFYEILEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
             + +    N+  D +    D    R  L+  +      ++R++ + +    
Sbjct: 158 LLHWVSNQKNELRDPDEATKDA---RNHLEETYAAAYTTYQRRLRQANALDF 206


>gi|240142707|ref|YP_002967220.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A)
           [Methylobacterium extorquens AM1]
 gi|240012654|gb|ACS43879.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A)
           [Methylobacterium extorquens AM1]
          Length = 1116

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 7/160 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            RS  V A AGSGKT ++  R+  +L +   P  +  ++ T+ AA+E+  RV +++    
Sbjct: 22  ERSMIVEAGAGSGKTALMSGRIALMLASGVAPGAIAAVSFTELAASELLERVGDVVAR-- 79

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                +L  E+ +                 L         L   TIH FC+ +++ +P+E
Sbjct: 80  -----LLDGEVPEELRLALPHGLSPLQGANLAEAEARLDELVCTTIHGFCQRLVKPYPVE 134

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           A+I     +ADE ++  +  +     L   +      + +
Sbjct: 135 ADIDPGARVADEAEADGIFRDLLDEWLRECLSGGGSLVAE 174


>gi|89901806|ref|YP_524277.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89346543|gb|ABD70746.1| ATP-dependent DNA helicase UvrD [Rhodoferax ferrireducens T118]
          Length = 814

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 47/236 (19%)

Query: 5   NSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           ++  + S   DL+ Q     ++   + P   A + A AGSGKT +L  R+  LL      
Sbjct: 15  SAITQQSPPDDLLLQHLNPEQRAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQTGQVT 74

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P  +L +T T  AA EM  R+  ++                                   
Sbjct: 75  PGGVLAVTFTNKAAKEMMTRLSSMLPV--------------------------------- 101

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                   G+ + T H  C   ++     AN+   F I D +     I+   K       
Sbjct: 102 -----NVRGMWIGTFHGLCNRFLRAHFKLANLPQSFQILDTQDQLSSIKRLYKQF----G 152

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
           +D+     K     +    ++ +   + ++     R  +++   +     R  +++
Sbjct: 153 IDDERFPPKQMQWFIGGCKEDGLRPNMVEVRDEETRKKVEIYQLYEDQCQREGVVD 208


>gi|297242864|ref|ZP_06926802.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
 gi|296889075|gb|EFH27809.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
          Length = 981

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 41/175 (23%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH 61
           +     +  + +D ++  +S+ +    P     + A AGSGKT +L +R+  +L    A 
Sbjct: 96  HSRVAVDAQKLLDGLNSQQSQAVQYDGPA--LLIGAGAGSGKTRVLTRRIAWILSQKGAW 153

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           PS +L +T T  AAAEM  R+  +I + +                               
Sbjct: 154 PSQILAITFTNKAAAEMRERLSNLIGSEA------------------------------- 182

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    + V T H+ C  I+++      + S F+I D    ++L++      
Sbjct: 183 -------NTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERLVKIIATEL 230


>gi|196040164|ref|ZP_03107466.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99]
 gi|196029019|gb|EDX67624.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99]
          Length = 751

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|196034734|ref|ZP_03102142.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W]
 gi|218901494|ref|YP_002449328.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820]
 gi|228925549|ref|ZP_04088638.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944101|ref|ZP_04106480.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195992777|gb|EDX56737.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W]
 gi|218539393|gb|ACK91791.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820]
 gi|228815490|gb|EEM61732.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228834027|gb|EEM79575.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 751

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|149004237|ref|ZP_01829024.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69]
 gi|147757787|gb|EDK64800.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69]
          Length = 1421

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+ 
Sbjct: 234 TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 293

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 294 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 334

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K++F  +L  
Sbjct: 335 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 391

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
                  E  +          K+  F  S    +K + +S  
Sbjct: 392 FVGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 428


>gi|156740410|ref|YP_001430539.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156231738|gb|ABU56521.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 759

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 44/198 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S  +D ++  + + + A+       V A  GSGKT +L +RV  L+ +    P  +L 
Sbjct: 3   DASTILDGLNPAQRQAVTAA--PGPVLVLAGPGSGKTRVLTRRVAYLIGVHGVDPHHILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ +++                                         
Sbjct: 61  VTFTNKAAREMRDRLEKLLGPGE------------------------------------- 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              L V T H+ C   +++  +       FAI D +   +      K  L  + LD  + 
Sbjct: 84  AAALTVGTFHSICARFLRRDSIHLGRERDFAIYDTDDQLR----VMKRVLRDLNLDEKKH 139

Query: 188 LKKAFYEILEISNDEDIE 205
             +A +  +  + +E I+
Sbjct: 140 APRAIHAAISRAKNELID 157


>gi|49479079|ref|YP_034625.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|225862343|ref|YP_002747721.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102]
 gi|49330635|gb|AAT61281.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|225788890|gb|ACO29107.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102]
          Length = 753

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|148544658|ref|YP_001272028.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016]
 gi|184154011|ref|YP_001842352.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227363781|ref|ZP_03847888.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3]
 gi|325682992|ref|ZP_08162508.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A]
 gi|148531692|gb|ABQ83691.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016]
 gi|183225355|dbj|BAG25872.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227071138|gb|EEI09454.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3]
 gi|324977342|gb|EGC14293.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A]
          Length = 757

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  +SE +L ++      V A AGSGKT +L  RV  L+      P  +L +T T
Sbjct: 7   LLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                       E+   +
Sbjct: 65  NKAAREMKERVGKLLG--------------------------------------ESANEI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I+++   +      F IAD  + + L++      
Sbjct: 87  WVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAEL 131


>gi|228906067|ref|ZP_04069956.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200]
 gi|228853476|gb|EEM98244.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200]
          Length = 753

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|297184355|gb|ADI20471.1| superfamily I DNA and RNA helicases [uncultured alpha
           proteobacterium EB080_L58F04]
          Length = 781

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 44/197 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
             S  +D ++  +   + A D      + A AG+GKT  L  R+  LL    A P  +L 
Sbjct: 23  RSSPYLDQLNPAQRAAVEALD--GPVLMLAGAGTGKTKALTCRIAHLLTTGRARPHEILS 80

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV E++                                         
Sbjct: 81  VTFTNKAAREMKSRVAELLRQSVE------------------------------------ 104

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G   + T H+ C  ++++      + S F I D +   +L+++     L +  +D+   
Sbjct: 105 -GMPWMGTFHSICVKLLRRHAELVGLKSSFTILDTDDQIRLLKQ----LLVASDVDDKRW 159

Query: 188 LKKAFYEILEISNDEDI 204
             +    I++   +   
Sbjct: 160 PARQLAGIIDQWKNRAW 176


>gi|227543585|ref|ZP_03973634.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A]
 gi|300909386|ref|ZP_07126847.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112]
 gi|227186425|gb|EEI66496.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A]
 gi|300893251|gb|EFK86610.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112]
          Length = 757

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  +SE +L ++      V A AGSGKT +L  RV  L+      P  +L +T T
Sbjct: 7   LLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                       E+   +
Sbjct: 65  NKAAREMKERVGKLLG--------------------------------------ESANEI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I+++   +      F IAD  + + L++      
Sbjct: 87  WVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAEL 131


>gi|183601527|ref|ZP_02962897.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190974|ref|YP_002968368.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196380|ref|YP_002969935.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219133|gb|EDT89774.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249366|gb|ACS46306.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250934|gb|ACS47873.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793963|gb|ADG33498.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 939

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +LI     +Q  A         + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 46  ELIGDLNEQQAQAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTN 105

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 106 KAAAEMRERLGALIGGVA--------------------------------------DRMW 127

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I+++   +  + S F I D    ++LI+      
Sbjct: 128 VSTFHSACVRILRRDGEQIGLKSGFTIYDTADCERLIKLVCADF 171


>gi|289766345|ref|ZP_06525723.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11]
 gi|289717900|gb|EFD81912.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11]
          Length = 735

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
              ++ ++  + E   AS    S  + A AGSGKT  +  R+  ++      P ++L +T
Sbjct: 1   MNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV E++   +                                       
Sbjct: 59  FTNKAAKEMRERVEELVGDIAKAC------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
              + T H+F   +++ +  E    S+F I D +  K++++   K
Sbjct: 83  --TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 125


>gi|126728959|ref|ZP_01744774.1| DNA helicase II, putative [Sagittula stellata E-37]
 gi|126710889|gb|EBA09940.1| DNA helicase II, putative [Sagittula stellata E-37]
          Length = 827

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  +D ++  + E +   D      + A AG+GKT  L  RV+ LL    A P+ +L +T
Sbjct: 25  NPYLDELNPAQREAVEHLD--GPVLMLAGAGTGKTKALTARVVHLLNTGRARPNEILSVT 82

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++                                          G
Sbjct: 83  FTNKAAREMKTRVGKVLGQVVE-------------------------------------G 105

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+ C  ++++      + S+F I D +   +L+++  +    +  +D+     
Sbjct: 106 MPWMGTFHSICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQLVQ----AHGIDDKRWPA 161

Query: 190 KAFYEILEISNDEDI 204
           +    I++   +  +
Sbjct: 162 RQLANIIDGWKNRAL 176


>gi|322389861|ref|ZP_08063402.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903]
 gi|321143442|gb|EFX38879.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903]
          Length = 1221

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 29/219 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++VQR+L  +        L   T T  AA E+ 
Sbjct: 29  TPEQIDAIYSSGTNILVSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +      SD+                    + +  L   +       + T+ +F
Sbjct: 89  ERLESELGKALQASDDP-------------------ELKQHLARQIADVATSDIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            + ++ ++     +   F I     + + L  E  ++         N+E   AF +++  
Sbjct: 130 TQKVLTRYGYLLGLAPQFRILQNASEQRLLQNEVFQAVFDRYYQGENQE---AFVQMVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +      TL  + I      ++  F  S     K +E+
Sbjct: 187 FTGQRKNLTLFKEQI-----YQIYDFLQSTSDPEKWLEE 220


>gi|256028421|ref|ZP_05442255.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11]
          Length = 737

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           +   ++ ++  + E   AS    S  + A AGSGKT  +  R+  ++      P ++L +
Sbjct: 2   NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAV 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV E++   +                                      
Sbjct: 60  TFTNKAAKEMRERVEELVGDIAKAC----------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               + T H+F   +++ +  E    S+F I D +  K++++   K
Sbjct: 85  ---TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 127


>gi|163738701|ref|ZP_02146115.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
 gi|161388029|gb|EDQ12384.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
          Length = 787

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  +   +   +      + A AG+GKT  L  R++ LL    A P+ +L +T T
Sbjct: 27  YLDGLNPAQRAAVECLE--GPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                          G  
Sbjct: 85  NKAAREMKERVAGMLGQAVE-------------------------------------GMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  ++++      + S+F I D +   +L+++     + +  +D+     + 
Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDADDQIRLLKQ----LIKAEGIDDKRWPARM 163

Query: 192 FYEILEISNDEDI 204
              +++   +  +
Sbjct: 164 LAGVIDDWKNRAL 176


>gi|295688867|ref|YP_003592560.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756]
 gi|295430770|gb|ADG09942.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756]
          Length = 806

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++    ++           V A AG+GKT +L  R+  +L    A P  LL +T T
Sbjct: 39  YLDGLN--PEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWELLAVTFT 96

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  II                      P    +                 
Sbjct: 97  NKAAREMRERITHIIG---------------------PEAEGLR---------------- 119

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+    I+++      + S++ I D +  ++L+++     + +  +D      + 
Sbjct: 120 WLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDQERLLKQ----LIEAENIDAKRWTPRI 175

Query: 192 FYEILEISNDEDI 204
             +I++   +   
Sbjct: 176 LSQIIDGWKNRGW 188


>gi|294614140|ref|ZP_06694061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636]
 gi|291592990|gb|EFF24578.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636]
          Length = 745

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILVSGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|311114987|ref|YP_003986208.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019]
 gi|310946481|gb|ADP39185.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019]
          Length = 964

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  +S+ +  + P     + A AGSGKT +L +R+  +L    A PS +L +T T
Sbjct: 100 LLEGLNPQQSKAVQYTGPA--LLIGAGAGSGKTRVLTRRIAWILANRKAWPSQILAITFT 157

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  +I                                        +   +
Sbjct: 158 NKAAAEMRERLASLIG--------------------------------------NSANSM 179

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I++       + S F+I D    ++L++      
Sbjct: 180 WVSTFHSACVKILRAHGDSIGLKSGFSIYDSSDCERLVKIIASEL 224


>gi|150015241|ref|YP_001307495.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149901706|gb|ABR32539.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 755

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++   +  P ++L +T T
Sbjct: 1   MDLKSLLNKEQYEGATTIDGQVLILAGAGSGKTRVLTHRMAHMIEDLDIAPYSILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  +I   +                                        +
Sbjct: 61  NKAAKEMKDRVKALIGERAE--------------------------------------NM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+ C  I+++   +    S F I D    K L++E  K+ 
Sbjct: 83  WISTFHSTCVRILRREIDKIGYKSSFTIYDSSDQKTLVKECMKTL 127


>gi|308235914|ref|ZP_07666651.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
           ATCC 14018]
          Length = 956

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  +S+ +  + P     + A AGSGKT +L +R+  +L    A PS +L +T T
Sbjct: 92  LLEGLNPQQSKAVQYTGPA--LLIGAGAGSGKTRVLTRRIAWILANRKAWPSQILAITFT 149

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+  +I                                        +   +
Sbjct: 150 NKAAAEMRERLASLIG--------------------------------------NSANSM 171

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I++       + S F+I D    ++L++      
Sbjct: 172 WVSTFHSACVKILRAHGDSIGLKSGFSIYDSSDCERLVKIIASEL 216


>gi|293557128|ref|ZP_06675682.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039]
 gi|291600697|gb|EFF30995.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039]
          Length = 745

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILVSGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|229194679|ref|ZP_04321472.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293]
 gi|228588782|gb|EEK46807.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293]
          Length = 753

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|324999173|ref|ZP_08120285.1| ATP-dependent DNA helicase PcrA [Pseudonocardia sp. P1]
          Length = 829

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 93/258 (36%), Gaps = 73/258 (28%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + ++ ++  + E    +       + A AGSGKT +L  R+  LL     HP  ++ +T 
Sbjct: 27  QLLEGLNDRQRE--AVTHAGSPLLIVAGAGSGKTRVLTHRIGWLLAERGVHPGEIMSITF 84

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV  ++   S                                      G 
Sbjct: 85  TNKAAAEMKERVDGLVGRRS--------------------------------------GP 106

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-------------- 176
           + V T H+ C  I+++      + S F++ D + S++L+    +                
Sbjct: 107 MWVSTFHSMCVRILRREAKHLGVRSAFSVYDADDSRRLVGIVGRDLELDPKKFAPRALAA 166

Query: 177 ----LASIMLDNNEELKKA--------------FYEILEISNDEDIETLISDIISNRTAL 218
               L + +L  ++  ++A              +   L  +N  D + LI + +S    +
Sbjct: 167 QISNLKNELLSPDDAAERAGTDHERRIAEVYGVYQSRLRQANAFDFDDLIMETVSLLDRM 226

Query: 219 KLIFFFFSYLWRRKIIEK 236
             +  ++   +R  ++++
Sbjct: 227 PAVAEYYRRRFRHVLVDE 244


>gi|270291088|ref|ZP_06197311.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4]
 gi|270280484|gb|EFA26319.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4]
          Length = 757

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 67/190 (35%), Gaps = 45/190 (23%)

Query: 15  DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      +Q           + A AGSGKT +L  RV  L+   + +P  +L +T T 
Sbjct: 5   DLLKGLNDMQQQAVQTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 65  KAAREMRERVANLLGEVA--------------------------------------SEIW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN-EELKKA 191
           V T HA C  I+++   +      F+IAD  + + LI    K  LA +  D    + +  
Sbjct: 87  VSTFHALCVRILRRDIEQIGYNRAFSIADPSEQRTLI----KHVLADLNYDPKVYDPRSV 142

Query: 192 FYEILEISND 201
             +I    ND
Sbjct: 143 LGKISNAKND 152


>gi|229021877|ref|ZP_04178447.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272]
 gi|228739423|gb|EEL89849.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272]
          Length = 747

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPEQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|229171137|ref|ZP_04298731.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3]
 gi|228612315|gb|EEK69543.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3]
          Length = 753

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 40/168 (23%)

Query: 10  HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
            S+T  L++    +Q  A         + A AGSGKT +L  R+  LL      P  +L 
Sbjct: 5   MSKTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLA 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+  ++   +                                     
Sbjct: 65  ITFTNKAAREMRERIDTLVGPEAE------------------------------------ 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  --DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|323341292|ref|ZP_08081537.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644]
 gi|323091286|gb|EFZ33913.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644]
          Length = 756

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 44/196 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           ++ ++ ++  + E ++ ++      + A AGSGKT +L  RV  L+   N +P  +L +T
Sbjct: 15  NDLLNGMNDKQREAVVCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEHQNVNPWNILAIT 72

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++   S                                       
Sbjct: 73  FTNKAAREMRERIDRLVEYGSE-------------------------------------- 94

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            + V T HA C  I+++   +   +  F I    + K L++     TL    LD  +   
Sbjct: 95  AVWVSTFHALCVRILRRDAEKVGFSKAFTIGSPSEQKTLMKHIVADTL---NLDTKQYDP 151

Query: 190 KAFYEILEISNDEDIE 205
           ++F   +    +E IE
Sbjct: 152 RSFLASISSWKNELIE 167


>gi|194466913|ref|ZP_03072900.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23]
 gi|194453949|gb|EDX42846.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23]
          Length = 757

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  +SE +L ++      V A AGSGKT +L  RV  L+      P  +L +T T
Sbjct: 7   LLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                       E+   +
Sbjct: 65  NKAAREMKERVGKLLG--------------------------------------ESANEI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I+++   +      F IAD  + + L++      
Sbjct: 87  WVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAEL 131


>gi|33239787|ref|NP_874729.1| superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237313|gb|AAP99381.1| Superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 807

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 17/173 (9%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           I  +     EQ  A D       V A AGSGKT  L  R+  L+      PS +L +T T
Sbjct: 5   ITFLDGLNKEQSKAVDHYEGPLLVVAGAGSGKTRALTHRIAHLISEYKVEPSEILAVTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++       +        KI  +   ++ + +         E    +
Sbjct: 65  NKAAREMKDRLEILLAQKLAKIEFGQPFSTLKISIQSELRTRIYR---------EVIKEI 115

Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
            + T HA    +++    ++  +  +  T HF+I DE+ +  LI+E     L 
Sbjct: 116 WIGTFHALFARLLRFDIEKYVDKEGLKWTRHFSIYDEKDALSLIKEIVTEDLQ 168


>gi|256847800|ref|ZP_05553245.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715489|gb|EEU30465.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis
           101-4-CHN]
          Length = 759

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +  ++  + E +LA++      V A AGSGKT +L  RV  L+   N  P  +L +T T
Sbjct: 4   ALAGMNDKQQEAVLATE--GPVLVMAGAGSGKTRVLTHRVAYLIEEKNVLPWHILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                                       ++   +
Sbjct: 62  NKAAREMKERIGKLLG--------------------------------------DSANDI 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I+++   +    + F IAD  + + L++      
Sbjct: 84  WVSTFHALCVRILRRDIDKLGFNTAFTIADPGEQRTLMKRICAEL 128


>gi|148554134|ref|YP_001261716.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1]
 gi|148499324|gb|ABQ67578.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1]
          Length = 892

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 42/190 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      ++           V A AG+GKT  L  R+  L+    A PS +L +T T  A
Sbjct: 146 LRGLNPPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATRRAWPSEILAVTFTNKA 205

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++                                          G   + 
Sbjct: 206 AREMRERVGRLLGQAVE-------------------------------------GMPWLG 228

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+    ++++      +T  F I D +   +L+++     LA+  LD      +    
Sbjct: 229 TFHSVAARMLRRHAELVGLTPSFTILDTDDQLRLLKQ----LLAAADLDEKRWPARQLAG 284

Query: 195 ILEISNDEDI 204
           +++   +  +
Sbjct: 285 LIDRWKNRGL 294


>gi|312867393|ref|ZP_07727602.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis
           F0405]
 gi|311097094|gb|EFQ55329.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis
           F0405]
          Length = 1221

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 29/219 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++VQR+L  +        L   T T  AA E+ 
Sbjct: 29  TPEQIDAIYSSGTNILVSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +      SD+                    + +  L   +       + T+ +F
Sbjct: 89  ERLESELGKALQASDDP-------------------ELKQHLARQIADVATSDIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            + ++ ++     +   F I     + + L  E  ++         N+E   AF +++  
Sbjct: 130 TQKVLTRYGYLLGLAPQFRILQNASEQRLLQNEVFQAVFDRYYQGENQE---AFVQMVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +      TL  +        ++  F  S     K +E+
Sbjct: 187 FTGQRKNLTLFKE-----QVYQIYDFLQSTSDPEKWLEE 220


>gi|225174502|ref|ZP_03728501.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
 gi|225170287|gb|EEG79082.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
          Length = 1069

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 20/165 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +   ++ Q + +  T +  V A AGSGKT  LVQR+  L+         +  +T T+ AA
Sbjct: 6   LQDEQARQAIKTRLTETFLVEAGAGSGKTTSLVQRMTALISTGQCQMENMAAVTFTRKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R  E +      + +  +                   +  L T L       + T
Sbjct: 66  GELRERFQEKLEKEYQSTTDPTT-------------------KQTLETALSQLDRAFIGT 106

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           IH+FC  ++++ P+EA ++  F   +  + K L + A +  L  +
Sbjct: 107 IHSFCSRLLRERPVEAGMSPDFTEIEGLEEKILAQTAWEEYLLEV 151


>gi|296876208|ref|ZP_06900262.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC
           15912]
 gi|296432919|gb|EFH18712.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC
           15912]
          Length = 1221

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 29/219 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++VQR+L  +        L   T T  AA E+ 
Sbjct: 29  TPEQIDAIYSSGTNILVSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +      SD+                    + +  L   +       + T+ +F
Sbjct: 89  ERLESELGKALQASDDP-------------------ELKQHLARQIADVATSDIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            + ++ ++     +   F I     + + L  E  ++         N+E   AF +++  
Sbjct: 130 TQKVLTRYGYLLGLAPQFRILQNASEQRLLQNEVFQAVFDRYYQGENQE---AFVQMVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +      TL  +        ++  F  S     K +E+
Sbjct: 187 FTGQRKNLTLFKE-----QVYQIYDFLQSTSDPEKWLEE 220


>gi|229176883|ref|ZP_04304279.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W]
 gi|228606556|gb|EEK63981.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W]
          Length = 749

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + ++ ++    +Q           + A AGSGKT +L  R+  LL      P  +L +T 
Sbjct: 6   KLLNGLN--PQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 64  TNKAAREMRERIDTLVGPEAE--------------------------------------D 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 86  IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|149179307|ref|ZP_01857868.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148841848|gb|EDL56250.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 693

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 28/167 (16%)

Query: 11  SETIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            +  DL  Q    +Q  A   T    + A AG+GKT  L  RV  L+     PS +L LT
Sbjct: 6   PQLEDLFKQLNPEQQAAACHDTGPLLIIAGAGTGKTTTLSHRVAYLIAQGIDPSRILLLT 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            ++ AA EM  RV  ++ A S   +   SA    I G                       
Sbjct: 66  FSRRAANEMVRRVDALLRAMSAGRENTASARSRSIWG----------------------- 102

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                T H+    +++++     +   F I D   ++ L+   +   
Sbjct: 103 ----GTFHSTAARLLRRYGQAIGLPDDFTIIDRSDAEDLMSALRSEL 145


>gi|311067135|ref|YP_003972058.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
 gi|310867652|gb|ADP31127.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
          Length = 739

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            ++ +  ++  + E +  +D      + A AGSGKT +L  R+  L+   +  P  +L +
Sbjct: 5   SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 63  TFTNKAAREMKERVESILGPGA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + + T H+ C  I+++      I  +F+I D      +I+   K 
Sbjct: 85  DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKE 131


>gi|291570130|dbj|BAI92402.1| ATP-dependent DNA helicase PcrA [Arthrospira platensis NIES-39]
          Length = 779

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 23/200 (11%)

Query: 11  SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            E++D ++     Q  A +       V A AGSGKT  L  RV  L+  +  +P  +L +
Sbjct: 1   MESVDFLTSLNPSQRQAVEHFCGPMLVVAGAGSGKTRALTYRVANLIDNHKVNPENILAV 60

Query: 69  THTKAAAAEMSHRVLEII--TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           T T  AA E+  R+  I           + LSA    IQ +  ++      +HL      
Sbjct: 61  TFTNKAAREIKDRIESIFAQQQAQKKYQKPLSALEPAIQTQLRSQIYRKLTKHL------ 114

Query: 127 TPGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180
                 + T H+ C  I++    ++  E       +F+I DE     L+++    TL   
Sbjct: 115 -----WMGTFHSLCARILRYDINKYQDEKGRQWKPNFSIFDESDVLALVKQIVTKTLN-- 167

Query: 181 MLDNNEELKKAFYEILEISN 200
           + D   + +K  Y+I    N
Sbjct: 168 LDDKKFDPRKTRYKISNAKN 187


>gi|113477645|ref|YP_723706.1| ATP-dependent DNA helicase Rep [Trichodesmium erythraeum IMS101]
 gi|110168693|gb|ABG53233.1| ATP-dependent DNA helicase, Rep family [Trichodesmium erythraeum
           IMS101]
          Length = 781

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 78/194 (40%), Gaps = 19/194 (9%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++Q    Q  A +       V A AGSGKT  L  RV+ L+  +  HP  +L +T T 
Sbjct: 5   DFLTQLNLSQRQAVEHFCGPMLVVAGAGSGKTRALTYRVVHLIRHHRVHPENILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ ++         E   A+  K      ++  +     +   I +    L 
Sbjct: 65  KAAQEMKDRIEKVFA------QEQAEAKYNKPFSALTSEEQIRLRSQVYKNITKH---LW 115

Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           V T H  C  I++    ++  E       +F+I DE  ++ LI++     L   + D   
Sbjct: 116 VGTFHNLCARILRFDINKYQDEKKRHWDKNFSIFDESDAQSLIKQIVTKQLN--LDDKKF 173

Query: 187 ELKKAFYEILEISN 200
           E +   Y I    N
Sbjct: 174 EPRSVRYAISNAKN 187


>gi|269977462|ref|ZP_06184434.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|306819108|ref|ZP_07452822.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
 gi|269934378|gb|EEZ90940.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|304648084|gb|EFM45395.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
          Length = 900

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 74/212 (34%), Gaps = 53/212 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++    + P  +  V A AGSGKT +L +R+  LL      P  +L +T T  AA EM
Sbjct: 59  NPAQYQAVTHPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEM 118

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 119 RERVETLVGNAAKY--------------------------------------MWVSTFHS 140

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK------------KSTLASIMLDNNE 186
            C  I++       IT  F+I D   +K L+                KS  A I    NE
Sbjct: 141 SCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNE 200

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTAL 218
            ++ A     E++  + I  L ++I +    L
Sbjct: 201 LVEPA--TFAEMAAPDKISQLTAEIYAEYQQL 230


>gi|227875827|ref|ZP_03993953.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|227843575|gb|EEJ53758.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243]
          Length = 900

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 74/212 (34%), Gaps = 53/212 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++    + P  +  V A AGSGKT +L +R+  LL      P  +L +T T  AA EM
Sbjct: 59  NPAQYQAVTHPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEM 118

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 119 RERVETLVGNAAKY--------------------------------------MWVSTFHS 140

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK------------KSTLASIMLDNNE 186
            C  I++       IT  F+I D   +K L+                KS  A I    NE
Sbjct: 141 SCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNE 200

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTAL 218
            ++ A     E++  + I  L ++I +    L
Sbjct: 201 LVEPA--TFAEMAAPDKISQLTAEIYAEYQQL 230


>gi|323705998|ref|ZP_08117568.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534612|gb|EGB24393.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 716

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 42/167 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
              ++ ++  + E ++ ++      + A AGSGKT +L  R+  L+   N  P+ ++ +T
Sbjct: 1   MNILEGLNDRQKEAVVTTE--GPVLILAGAGSGKTRVLTHRIAYLVREKNVSPANIIAIT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++                                          G
Sbjct: 59  FTNKAAKEMKDRVESLLGYV---------------------------------------G 79

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            L V T H+ C  I+++   +     +F I D +  K LI +  K  
Sbjct: 80  DLWVSTFHSACVRILRRDIEKIGYDRNFVIYDTQDQKTLISDCIKEL 126


>gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
 gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
          Length = 830

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 77/261 (29%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  + E ++ +       + A AGSGKT +L +R+  LL      P  +L +T T
Sbjct: 31  LLEGLNPQQREAVVHA--GSPLLIVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFT 88

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++   +                                        +
Sbjct: 89  NKAAAEMRERVAALVGPRA--------------------------------------NAM 110

Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST-------------- 176
            V T H+ C  I++ Q  L   + S+F+I D + S++L+    K                
Sbjct: 111 WVSTFHSSCVRILRAQAALLPGLNSNFSIYDSDDSRRLLTMISKDLELDTKRFSARLLAT 170

Query: 177 ----LASIMLDNNEELKKA-----------------FYEILEISNDEDIETLISDIISNR 215
               L + ++   E +  A                 + + L  +N  D + LI + ++  
Sbjct: 171 HISNLKNELVGPEEAVVAADQDPAELPRLIAKVYGHYQQRLRAANALDFDDLIGETVALL 230

Query: 216 TALKLIFFFFSYLWRRKIIEK 236
            A   I  ++   +R  ++++
Sbjct: 231 QAFPQIAEYYRRRFRHVLVDE 251


>gi|229003295|ref|ZP_04161125.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4]
 gi|228757913|gb|EEM07128.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4]
          Length = 747

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q H    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAHMSITDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+ +++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 134


>gi|57234053|ref|YP_181909.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195]
 gi|57224501|gb|AAW39558.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195]
          Length = 738

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + +  ++  + + + A +      + A  GSGKT ++  R+  L+ +   +P  ++ +T 
Sbjct: 3   DILTGLNPAQKQAVEAVE--GPVLILAGPGSGKTRVITHRIAYLIKVVGINPHRIMAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R                                      L +      G 
Sbjct: 61  TNKAAREMETR--------------------------------------LNLLAPSAAGR 82

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L + T HA C  I++Q  L   + + F I D++  + LI++A    
Sbjct: 83  LTMGTFHAICARILRQDGLPLGVPADFVIYDDDDQQSLIKQAMAEL 128


>gi|302871914|ref|YP_003840550.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574773|gb|ADL42564.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
          Length = 714

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ++ + +   +Q  A         V A AGSGKT ++  R+  +L    A+P  +L +T T
Sbjct: 1   MEWLKELNDQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                       ++   +
Sbjct: 61  NKAADEMKERIKRLVNT-------------------------------------QSFSEM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I++        +++F I D +   +L++E     
Sbjct: 84  WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDKNQLLKECFDKL 128


>gi|15678539|ref|NP_275654.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621583|gb|AAB85017.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 683

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 47/231 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           I  T  ++      T    V A  G+GKT I+V+RV  L+    A PS+L+ +T T+ AA
Sbjct: 8   IQLTDEQRRAVEHFTGPLLVVAGPGAGKTRIIVERVAHLIDERGAEPSSLVVITFTRKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R++  +   +                                        +++ T
Sbjct: 68  DELKERIIRRVGGRAE--------------------------------------EMQIST 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYE 194
           IH+FC  I++ +P    + S+F + DEE     I E ++   L ++  +    ++  F E
Sbjct: 90  IHSFCNRILRMYPDHHTLGSNFHVLDEENQLMFIYEHREQLGLGNVQRERFPLIQGFFSE 149

Query: 195 ILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIEKSLWSIA 242
             E  N  D ETLI    +    R  + +   +  YL      E  L   A
Sbjct: 150 CQE--NMVDPETLIQHYRNKGAGRFEMTVAEAYQRYLNLMD--ENGLLDFA 196


>gi|152974126|ref|YP_001373643.1| ATP-dependent DNA helicase PcrA [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152022878|gb|ABS20648.1| ATP-dependent DNA helicase PcrA [Bacillus cytotoxicus NVH 391-98]
          Length = 741

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPEQQKAVQTTEGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNILAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 130


>gi|307700275|ref|ZP_07637315.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
 gi|307614486|gb|EFN93715.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
          Length = 900

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 74/212 (34%), Gaps = 53/212 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++    + P  +  V A AGSGKT +L +R+  LL      P  +L +T T  AA EM
Sbjct: 59  NPAQYQAVTHPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEM 118

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 119 RERVETLVGNAAKY--------------------------------------MWVSTFHS 140

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK------------KSTLASIMLDNNE 186
            C  I++       IT  F+I D   +K L+                KS  A I    NE
Sbjct: 141 SCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNE 200

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTAL 218
            ++ A     E++  + I  L ++I +    L
Sbjct: 201 LVEPA--TFAEMAAPDKISQLTAEIYAEYQQL 230


>gi|215426220|ref|ZP_03424139.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
 gi|289749473|ref|ZP_06508851.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
 gi|289690060|gb|EFD57489.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
          Length = 632

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++   +                                        
Sbjct: 76  TNKAAAEMRERVVGLVGEKARY-------------------------------------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|72383505|ref|YP_292860.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str.
           NATL2A]
 gi|72003355|gb|AAZ59157.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus
           str. NATL2A]
          Length = 805

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 19/172 (11%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
            ++     Q  A D       V A AGSGKT  L  R+  L+      PS++L +T T  
Sbjct: 8   FLNGLNEAQSHAVDHFHGPLLVVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNK 67

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LK 132
           AA EM  R+  ++               +   GK      +++ R +   I       L 
Sbjct: 68  AAREMKDRLELLLAKRLS----------SLTHGKPWTALQVAEQREIRNRIHREISRELW 117

Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
           + T HA    +++    +F     +  T  F+I DE  ++ LI+E     L 
Sbjct: 118 IGTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDETDAQSLIKEIVTQDLQ 169


>gi|319744909|gb|EFV97242.1| ATP-dependent nuclease subunit A [Streptococcus agalactiae ATCC
           13813]
          Length = 1208

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++V+R+L  LL      +L   T T  AA E+ 
Sbjct: 30  TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIESLFISTFTVKAAGELK 89

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I                    +    ++    +  L   L       + T+ AF
Sbjct: 90  ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIATMDAF 130

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            + I+ Q+     I+  F I  D+ +   +  E      +  M   N     +F +++  
Sbjct: 131 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 187

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            S +        +++      K+  F  S    ++ ++
Sbjct: 188 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 220


>gi|312144162|ref|YP_003995608.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus']
 gi|311904813|gb|ADQ15254.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus']
          Length = 715

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D+I     EQ  A    +    + A AGSGKT +L +R+  L+      P  +L +T T 
Sbjct: 5   DIIKDLNKEQKKAVQHDKGPLLLLAGAGSGKTRVLTRRIAYLIKQRGVSPYNILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM +RV +++                                            L 
Sbjct: 65  KAAEEMKNRVAKMVDGVDK--------------------------------------SLL 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T H+FC  I+++   +    S+F I D    +KLI++  K 
Sbjct: 87  ISTFHSFCVRILRREAEKLGYQSNFVIFDSIDQRKLIKKILKE 129


>gi|229101109|ref|ZP_04231875.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28]
 gi|228682237|gb|EEL36348.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28]
          Length = 749

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDILVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|17231987|ref|NP_488535.1| DNA helicase II [Nostoc sp. PCC 7120]
 gi|17133631|dbj|BAB76194.1| DNA helicase II [Nostoc sp. PCC 7120]
          Length = 772

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 19/196 (9%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           T D +S     Q  A +       V A AGSGKT  L  R+  L+L +   P  +L +T 
Sbjct: 2   TTDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVAPENILAVTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  +      L++     ++     +   +S + K          T   
Sbjct: 62  TNKAAREMKERIQRLFAEQLALTEHGKRLDLLPEHEQTKLRSRVYKT---------TIKE 112

Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           L   T H+    I++    ++  E       +F+I DE   + LI+E     L   + D 
Sbjct: 113 LWCGTFHSLFSRILRFDIEKYQDEKGRQWNRNFSIFDESDVQGLIKEIVTKQLN--LDDK 170

Query: 185 NEELKKAFYEILEISN 200
             E +   Y I    N
Sbjct: 171 KFEPRSVRYAISNAKN 186


>gi|325479235|gb|EGC82331.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 731

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 45/188 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D ++    ++           V A AGSGKT +L   +  L+   N  P  ++ +T T 
Sbjct: 3   LDSLN--NMQKKAVLHDKGPLLVLAGAGSGKTRVLTTSIAYLIEEKNIDPRNIIAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                            L 
Sbjct: 61  KAANEMKERISNLLNMDV--------------------------------------SHLW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I++    +     +F I D    K L++E     +  +    +   ++A 
Sbjct: 83  IGTFHSICARILRMNIDKIGYDKNFTIYDSSDQKTLVKE----IINELGFKEDITPREAL 138

Query: 193 YEILEISN 200
             I +  N
Sbjct: 139 NVISQAKN 146


>gi|304413632|ref|ZP_07395076.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
           insecticola LSR1]
 gi|304283723|gb|EFL92117.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
           insecticola LSR1]
          Length = 715

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 46/193 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
            S  +D +++ + E +      +   V A AGSGK+ +LV R+  LL   +  P +++ +
Sbjct: 1   MSNLLDGLNEKQREAVA--TRYKHLLVLAGAGSGKSRVLVHRIAWLLSQEDISPFSIIAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  +AAEM HR+  +  A                                        
Sbjct: 59  TFTNKSAAEMRHRIENLGRA---------------------------------------H 79

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
            G+ V T H     +++   L AN+   F + D +   +      K  + S+ LD  +  
Sbjct: 80  NGMWVGTFHGLAHRLLRIHHLAANLPQDFQVLDSDDQLRF----VKRIIKSLDLDEKKWS 135

Query: 189 KKAFYEILEISND 201
            +     +    D
Sbjct: 136 PRQAISYINGKKD 148


>gi|222094063|ref|YP_002528120.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|229137129|ref|ZP_04265748.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26]
 gi|221238118|gb|ACM10828.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|228646301|gb|EEL02516.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26]
          Length = 747

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|240138235|ref|YP_002962707.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase
           [Methylobacterium extorquens AM1]
 gi|240008204|gb|ACS39430.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase
           [Methylobacterium extorquens AM1]
          Length = 1116

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            RS  V A AGSGKT ++  R+  +L +   P  +  ++ T+ AA+E+  RV +++    
Sbjct: 22  ERSMIVEAGAGSGKTALMSGRIALMLASGVAPGAIAAVSFTELAASELLERVGDVVAH-- 79

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                +L+ E+ +                 L         L   TIH FC+ +++ +P+E
Sbjct: 80  -----LLAGEVPEELRLALPHGLSPLQGANLAEAEARLDELVCTTIHGFCQRLVKPYPVE 134

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           A+I     +ADE ++  +  +     L   +
Sbjct: 135 ADIDPGARVADEAEADGIFRDLLDEWLRECL 165


>gi|237714589|ref|ZP_04545070.1| ATP-dependent DNA helicase [Bacteroides sp. D1]
 gi|262406455|ref|ZP_06083004.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22]
 gi|294643703|ref|ZP_06721503.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC
           2a]
 gi|229445358|gb|EEO51149.1| ATP-dependent DNA helicase [Bacteroides sp. D1]
 gi|262355158|gb|EEZ04249.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22]
 gi|292640941|gb|EFF59159.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC
           2a]
          Length = 792

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71
           + I +    Q  A       + V A AGSGKT +L  ++  LL      +P  +L LT T
Sbjct: 4   NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                           M +AR+L           
Sbjct: 64  NKAAREMKERIARQVG--------------------------MERARYL----------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++        TS F I D   SK L+    K  
Sbjct: 87  WMGTFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLLRSIIKEM 131


>gi|47569949|ref|ZP_00240614.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241]
 gi|228983546|ref|ZP_04143751.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|47553395|gb|EAL11781.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241]
 gi|228776142|gb|EEM24503.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 747

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|296330119|ref|ZP_06872601.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673364|ref|YP_003865036.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152708|gb|EFG93575.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411608|gb|ADM36727.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 739

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            ++ +  ++  + E +  +D      + A AGSGKT +L  R+  L+   +  P  +L +
Sbjct: 5   SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 63  TFTNKAAREMKERVESILGPGA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + + T H+ C  I+++      I  +F+I D      +I+   K 
Sbjct: 85  DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKE 131


>gi|228989471|ref|ZP_04149456.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442]
 gi|228770196|gb|EEM18775.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442]
          Length = 747

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q H    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAHMSITDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+ +++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 134


>gi|228995666|ref|ZP_04155329.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17]
 gi|228764043|gb|EEM12927.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17]
          Length = 747

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q H    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAHMSITDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+ +++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 134


>gi|167634189|ref|ZP_02392511.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442]
 gi|170688392|ref|ZP_02879601.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465]
 gi|254742291|ref|ZP_05199977.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Kruger B]
 gi|167530503|gb|EDR93218.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442]
 gi|170667724|gb|EDT18478.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465]
          Length = 751

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|229159445|ref|ZP_04287463.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803]
 gi|228624016|gb|EEK80824.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803]
          Length = 754

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDAGDQLTVVKKIMKE 134


>gi|228899022|ref|ZP_04063295.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
 gi|228860597|gb|EEN04984.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
          Length = 749

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + ++ ++    +Q           + A AGSGKT +L  R+  LL      P  +L +T 
Sbjct: 6   KLLNGLN--PQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 64  TNKAAREMRERIDTLVGPEAE--------------------------------------D 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 86  IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|311064185|ref|YP_003970910.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum PRL2010]
 gi|310866504|gb|ADP35873.1| PcrA ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 885

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 45/176 (25%)

Query: 8   QEHSETI-----DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NA 60
           Q+  + I     +L+     +Q  A         + A AGSGKT +L +R+  +L    A
Sbjct: 2   QQDPDLIARSAEELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGA 61

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            PS +L +T T  AAAEM  R+  +I   +                              
Sbjct: 62  WPSQILAITFTNKAAAEMRERLEGLIGPVAQ----------------------------- 92

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                     + V T H+ C  I+++      + S F+I D    ++L++      
Sbjct: 93  ---------RMWVSTFHSACVRILRRDGQSIGLASGFSIYDTADCERLVKLVGADL 139


>gi|227530244|ref|ZP_03960293.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC
           49540]
 gi|227349833|gb|EEJ40124.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC
           49540]
          Length = 761

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++  ++E +L ++      V A AGSGKT +L  R+  L+      P  +L +T T
Sbjct: 10  LLDGMNDKQTEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEEKGVLPWNILAITFT 67

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                       E+   +
Sbjct: 68  NKAAREMQERVGKLLG--------------------------------------ESARDI 89

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HA C  I+++   +      F IAD  + + L++      
Sbjct: 90  WVSTFHALCVRILRRDIEKLGYNRAFTIADTSEQRTLMKRICAEL 134


>gi|227512902|ref|ZP_03942951.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
 gi|227083902|gb|EEI19214.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
          Length = 743

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 54/211 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            K ++           + A AGSGKT +L  R+  ++  N   P  +L +T T  AA EM
Sbjct: 11  NKDQKDAVIHTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                       E+   + V T HA
Sbjct: 71  RERVSKLLD--------------------------------------ESGDDVWVSTFHA 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS------------TLASIMLDNNE 186
            C  I+++   +      F IAD  + + L++   +              L+SI    N+
Sbjct: 93  LCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKND 152

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTA 217
            L     +  +   D D + +++D+     A
Sbjct: 153 LLTP---KAFKAQADSDFDQIVADVYERYQA 180


>gi|254432144|ref|ZP_05045847.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001]
 gi|197626597|gb|EDY39156.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001]
          Length = 800

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 81/213 (38%), Gaps = 22/213 (10%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
            ++     Q  A D  T    V A AGSGKT  L  R+  L+    A P+ LL +T T  
Sbjct: 4   FLAGLNEAQRKAVDHHTGPLLVVAGAGSGKTRALTHRIAHLIGHHGADPAELLAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++        ++  ++  +     P          +   +++    L +
Sbjct: 64  AAREMKERLELLLA------QKLAQSQFGQPWSTLPLLEQRQLRSRIYREVIKD---LWI 114

Query: 134 QTIHAFCEAIMQ------QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            T HA    +++      + P   + T  F+I DE   + LI+E        + LD    
Sbjct: 115 GTFHALFARLLRFDIDKFRDPEGLSWTRQFSIYDEGDVQSLIKEIVTQ---ELGLDPKRF 171

Query: 188 LKKAFYEILEISNDEDI--ETLISDIISNRTAL 218
             K     +  + ++    E L +D    R  L
Sbjct: 172 EPKKVRWAISNAKNQGWMPEQLEADAGGQRGKL 204


>gi|219683935|ref|YP_002470318.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621585|gb|ACL29742.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 907

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +LI     +Q  A         + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELIGDLNEQQAQAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLGALIGGVA--------------------------------------DRMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I+++   +  + S F I D    ++LI+      
Sbjct: 96  VSTFHSACVRILRRDGEQIGLKSGFTIYDTADCERLIKLVCADF 139


>gi|253698715|ref|YP_003019904.1| UvrD/REP helicase [Geobacter sp. M21]
 gi|251773565|gb|ACT16146.1| UvrD/REP helicase [Geobacter sp. M21]
          Length = 731

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 44/190 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++           V A AGSGKT ++V R+  L+         +L +T T  A
Sbjct: 4   LHNLNPPQKEAVLHGEGPLLVLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++                   G+ P                       + 
Sbjct: 64  AGEMRERLAHMLG-----------------DGELPL----------------------IS 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I++         S+FAI D++  +KL+++        + LD      KA   
Sbjct: 85  TFHSTCARILRSEIRHLGYDSNFAIYDDKDCEKLLKDCA----TELNLDEKRYPAKALAG 140

Query: 195 ILEISNDEDI 204
            L+   ++ +
Sbjct: 141 ALDEFKNQGL 150


>gi|167461916|ref|ZP_02327005.1| PcrA [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382982|ref|ZP_08056812.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153005|gb|EFX45465.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 776

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 40/171 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65
            E    +D I +   +Q  A + T+    + A AGSGKT +L  R+  L+ +  A P ++
Sbjct: 2   NETKNILDAIQRLNPQQCKAVETTQGPLLIMAGAGSGKTRVLTHRIAYLIASRKAAPWSI 61

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  RV ++    +                                   
Sbjct: 62  LAITFTNKAAREMQDRVGKLAGPAAE---------------------------------- 87

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                + V T H+ C  I+++       TS+F+I D      +I+   K  
Sbjct: 88  ----DIWVSTFHSMCVRILRKDISRLGFTSNFSILDSSDQLSVIKTCMKEL 134


>gi|19703927|ref|NP_603489.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714099|gb|AAL94788.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 735

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
              ++ ++  + E  L  D   S  + A AGSGKT  +  R+  ++      P ++L +T
Sbjct: 1   MNLLEKLNDKQREAALQID--GSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV E++   +                                       
Sbjct: 59  FTNKAAKEMRERVEELVGDVAKAC------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
              + T H+F   +++ +  E    S+F I D +  K++++   K
Sbjct: 83  --TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 125


>gi|229055131|ref|ZP_04195559.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603]
 gi|228721207|gb|EEL72736.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603]
          Length = 743

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + ++ ++    +Q        +  + A AGSGKT +L  R+  LL      P  +L +T 
Sbjct: 6   KLLNGLN--PQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ +++   +                                        
Sbjct: 64  TNKAAREMRERIDKLVGPEAE--------------------------------------D 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 86  IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|222151885|ref|YP_002561045.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402]
 gi|222121014|dbj|BAH18349.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402]
          Length = 721

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            + ++           + A AGSGKT +L  R+  L+   +  P  +L +T T  AA EM
Sbjct: 9   NEEQRQAVMTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKDVSPYKILAITFTNKAAKEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +II   S +                                      + + T H+
Sbjct: 69  KERVKKIIGDESDV--------------------------------------IWISTFHS 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C  I+++      I  +F I D    + ++++  K 
Sbjct: 91  MCVRILRRDIDRIGIERNFTILDPTDQRSVVKDILKR 127


>gi|50843216|ref|YP_056443.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202]
 gi|50840818|gb|AAT83485.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202]
 gi|315106181|gb|EFT78157.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA1]
          Length = 810

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++     Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|75909567|ref|YP_323863.1| ATP-dependent DNA helicase Rep [Anabaena variabilis ATCC 29413]
 gi|75703292|gb|ABA22968.1| ATP-dependent DNA helicase, Rep family [Anabaena variabilis ATCC
           29413]
          Length = 772

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 19/196 (9%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           T D +S     Q  A +       V A AGSGKT  L  R+  L+L +   P  +L +T 
Sbjct: 2   TTDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVAPENILAVTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  +      L++     ++     +   +S + K          T   
Sbjct: 62  TNKAAREMKERIQRLFAEQLALTEHGKRLDLLPEHEQTKLRSRVYKT---------TIKE 112

Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           L   T H+    I++    ++  E       +F+I DE   + LI+E     L   + D 
Sbjct: 113 LWCGTFHSLFSRILRFDIEKYQDEKGRQWNRNFSIFDESDVQGLIKEIVTKQLN--LDDK 170

Query: 185 NEELKKAFYEILEISN 200
             E +   Y I    N
Sbjct: 171 KFEPRSVRYAISNAKN 186


>gi|317407330|gb|EFV87300.1| DNA helicase II [Achromobacter xylosoxidans C54]
          Length = 762

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 45/222 (20%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++ +   EQ  A     + A V A AGSGKT +L  R+  L+    A P  LL +T T  
Sbjct: 1   MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  I+   +                                       GL +
Sbjct: 61  AAREMLARMSAILPIDTR--------------------------------------GLWI 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D          A K  + +  +D+ +   +   
Sbjct: 83  GTFHGLCNRMLRAHHRDAGLPQTFQILDVTDQLA----AIKRLMKANGVDDEKYPPRDVQ 138

Query: 194 EILEISNDEDIETL-ISDIISNRTALKLIFFFFSYLWRRKII 234
             +  + +E +    +    ++R  L  I+  +    +R+ +
Sbjct: 139 RFINGAKEEGLRPADVEAYDAHRRRLIEIYQLYEAQCQREGV 180


>gi|302340231|ref|YP_003805437.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637416|gb|ADK82843.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 728

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 84/224 (37%), Gaps = 49/224 (21%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           +    +D +++ + E +L   P  S  + A AGSGKT ++  ++  ++      P ++L 
Sbjct: 5   DVPAYLDALNRAQQEAVLYEGP--SLLILAGAGSGKTRVITSKIAYMIDRLGYDPYSILA 62

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV  ++   + +                                   
Sbjct: 63  VTFTNKAAGEMRQRVAAMVPDGAKVM---------------------------------- 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                ++T H+F   + ++     ++  +F I D+E S  L+   ++      +      
Sbjct: 89  -----IRTFHSFGAWLCRRHAKLLDLDPNFTIYDDEDSLTLLHALEEGKKRRELAPYAHL 143

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
           + +A  +   +S D+++E+L  D          ++  +    R 
Sbjct: 144 ISRA--KDYALSPDDELESLSRD-----PDFPRLYHSYEERLRE 180


>gi|237744963|ref|ZP_04575444.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1]
 gi|229432192|gb|EEO42404.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1]
          Length = 735

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
              ++ ++  + E   AS    S  + A AGSGKT  +  R+  ++      P ++L +T
Sbjct: 1   MNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV E++   +                                       
Sbjct: 59  FTNKAAKEMRERVEELVGDVAKAC------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
              + T H+F   +++ +  E    S+F I D +  K++++   K
Sbjct: 83  --TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 125


>gi|172038900|ref|YP_001805401.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700354|gb|ACB53335.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 772

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 28/189 (14%)

Query: 10  HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
            + +++ +SQ    Q +A +       V A AGSGKT  L  R+  L+      P ++L 
Sbjct: 1   MTASVNFLSQLNPSQRIAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-E 126
           +T T  AA EM  R+  +      L          K  G+  N       + LL  +  +
Sbjct: 61  VTFTNKAAREMKDRLERLFAQEMAL----------KHHGQPFNSLSEYDQKRLLSQVYKK 110

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITS---------HFAIADEEQSKKLIEEAKKSTL 177
           T   L + T H+ C  I++    + N            +F+I DE   + L++      L
Sbjct: 111 TTKKLWIGTFHSLCARILR---YDINKYQDERKRTWERNFSIFDESDVQSLVKNI---VL 164

Query: 178 ASIMLDNNE 186
               LD+ +
Sbjct: 165 KQFNLDDKK 173


>gi|296444468|ref|ZP_06886433.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
 gi|296258115|gb|EFH05177.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
          Length = 777

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
            +     EQ  A +       V A AG+GKT +L  R+  +L +  A P  +L +T T  
Sbjct: 30  FLDALNPEQRAAVETIDGPLLVLAGAGTGKTRVLTTRIAHILASAKARPWEILAVTFTNK 89

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  +    +                                          +
Sbjct: 90  AAREMRERVETLAGPGAEALQ-------------------------------------WL 112

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T HA    I+++      + S+F I D +   +L+++     L +  +D+     +A  
Sbjct: 113 GTFHAISAKILRRHAELVGLKSNFTILDTDDQIRLLKQ----VLQAENVDDKRWPPRALA 168

Query: 194 EILEISNDEDI 204
             ++   +  +
Sbjct: 169 HQIDAWKNRGL 179


>gi|261414687|ref|YP_003248370.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371143|gb|ACX73888.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325603|gb|ADL24804.1| ATP-dependent DNA helicase, UvrD/REP family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 803

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 57/161 (35%), Gaps = 41/161 (25%)

Query: 18  SQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           S+   EQL A + T     V A AGSGKT  L  R L L+      P+ +LC+T T  AA
Sbjct: 19  SRLDKEQLEAVETTEGYVRVVAGAGSGKTRTLTHRYLYLVKEMGISPANILCVTFTNKAA 78

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+  I+                                              + T
Sbjct: 79  AEMKKRIRSILGGDDSGY---------------------------------------IST 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H FC   +++     N    F I DE+  K L+ +A    
Sbjct: 100 FHGFCVQFLREEIHVLNYPKEFMILDEDDQKSLLRKAYADL 140


>gi|228913033|ref|ZP_04076672.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846438|gb|EEM91451.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 747

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|126661311|ref|ZP_01732380.1| DNA helicase II [Cyanothece sp. CCY0110]
 gi|126617407|gb|EAZ88207.1| DNA helicase II [Cyanothece sp. CCY0110]
          Length = 772

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 32/242 (13%)

Query: 10  HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
            + +++ +SQ    Q LA +       V A AGSGKT  L  R+  L+      P ++L 
Sbjct: 1   MTASVNFLSQLNPSQRLAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-E 126
           +T T  AA EM  R+  +      L          K   +  N     + + LL  +  +
Sbjct: 61  VTFTNKAAREMKDRLERLFAQEMAL----------KQHSQPFNSLSEYEQKRLLSQVYKK 110

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITS---------HFAIADEEQSKKLIEEAKKSTL 177
           T   L + T H+ C  I++    + N            +F+I DE   + L++      L
Sbjct: 111 TTKKLWIGTFHSLCARILR---YDINKYQDERKRTWERNFSIFDESDVQSLVKNI---VL 164

Query: 178 ASIMLDNNEELKKAFYEILEISNDEDI--ETLISD--IISNRTALKLIFFFFSYLWRRKI 233
               LD+ +   +     +  + +  +  E  + +      R   ++   + + L     
Sbjct: 165 KQFNLDDKKFNPRNVRYTISNAKNLGLSPEAYLKENSYAKGRIIAEVYEEYQNQLAANNA 224

Query: 234 IE 235
           ++
Sbjct: 225 LD 226


>gi|229131293|ref|ZP_04260195.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196]
 gi|229165271|ref|ZP_04293058.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621]
 gi|228618096|gb|EEK75134.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621]
 gi|228652179|gb|EEL08114.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196]
          Length = 743

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + ++ ++    +Q        +  + A AGSGKT +L  R+  LL      P  +L +T 
Sbjct: 6   KLLNGLN--PQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ +++   +                                        
Sbjct: 64  TNKAAREMRERIDKLVGPEAE--------------------------------------D 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 86  IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|124025096|ref|YP_001014212.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
 gi|123960164|gb|ABM74947.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
          Length = 805

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 19/172 (11%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
            ++     Q  A D       V A AGSGKT  L  R+  L+      PS++L +T T  
Sbjct: 8   FLNGLNEAQSHAVDHFHGPLLVVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNK 67

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LK 132
           AA EM  R+  ++               +   GK      +++ R +   I       L 
Sbjct: 68  AAREMKDRLELLLAKRLS----------SLTHGKPWTALQVAEQREIRNRIHREISRELW 117

Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
           + T HA    +++    +F     +  T  F+I DE  ++ LI+E     L 
Sbjct: 118 IGTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDETDAQSLIKEIVTQDLQ 169


>gi|324324304|gb|ADY19564.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 749

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
           20162]
 gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
           20162]
          Length = 802

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 41/165 (24%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +L+     +Q  A     S   + A AGSGKT +L +R+  LL     HP  +L +T T 
Sbjct: 29  ELLEGLNPQQKAAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLLRARGMHPGQILAITFTN 88

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV ++I   +                                        + 
Sbjct: 89  KAAAEMRERVAQLIGPRA--------------------------------------NTMW 110

Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+ C  I++ Q  L   + S+F+I D + S++L+    K  
Sbjct: 111 VSTFHSTCVRILRAQAGLLPGMNSNFSIYDADDSRRLLTMIVKEM 155


>gi|257869252|ref|ZP_05648905.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2]
 gi|257803416|gb|EEV32238.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2]
          Length = 750

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++           + A AGSGKT +L  R+  L+   N +P  +L +T T  A
Sbjct: 12  LANMNPRQKEAVMHTEGPLLLMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++ +                                          + V 
Sbjct: 72  AREMKERVNQLLGSGGE--------------------------------------DVWVS 93

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C  I+++   +   + +F I D  +   L++   K  
Sbjct: 94  TFHSMCVRILRRDVDQIGYSRNFTIIDTSEQNTLMKRVLKEL 135


>gi|224539562|ref|ZP_03680101.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518843|gb|EEF87948.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 667

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 54/163 (33%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + I +    Q  A       + V A AGSGKT +L  ++  LL     P  +L LT T  
Sbjct: 4   NYIEELNEGQRAAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                             +ARHL            +
Sbjct: 64  AAREMKERIARQVGD--------------------------QRARHL-----------WM 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+         TS F I D   SK L+    K  
Sbjct: 87  GTFHSIFLRILHAEAANIGFTSQFTIYDTADSKSLVRSIIKEM 129


>gi|296501120|ref|YP_003662820.1| DNA helicase II [Bacillus thuringiensis BMB171]
 gi|296322172|gb|ADH05100.1| DNA helicase II [Bacillus thuringiensis BMB171]
          Length = 749

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|229182687|ref|ZP_04309928.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1]
 gi|228600772|gb|EEK58351.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1]
          Length = 749

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|228931796|ref|ZP_04094692.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827776|gb|EEM73514.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 747

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|49183319|ref|YP_026571.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne]
 gi|65317729|ref|ZP_00390688.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165871400|ref|ZP_02216048.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488]
 gi|167640142|ref|ZP_02398409.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193]
 gi|170708734|ref|ZP_02899171.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389]
 gi|177653645|ref|ZP_02935784.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174]
 gi|190567423|ref|ZP_03020337.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I]
 gi|227812969|ref|YP_002812978.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684]
 gi|229599888|ref|YP_002864922.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248]
 gi|254756067|ref|ZP_05208096.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Vollum]
 gi|49177246|gb|AAT52622.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne]
 gi|164712884|gb|EDR18413.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488]
 gi|167511953|gb|EDR87332.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193]
 gi|170126313|gb|EDS95203.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389]
 gi|172081225|gb|EDT66300.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174]
 gi|190561550|gb|EDV15521.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I]
 gi|227005824|gb|ACP15567.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684]
 gi|229264296|gb|ACQ45933.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248]
          Length = 751

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 8   QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           Q +    D  L      +Q           + A AGSGKT +L  R+  LL      P  
Sbjct: 2   QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T  AA EM  R+  ++   +                                  
Sbjct: 62  VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 89  -----DIWISTFHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKE 134


>gi|256826533|ref|YP_003150492.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Cryptobacterium curtum DSM 15641]
 gi|256582676|gb|ACU93810.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Cryptobacterium curtum DSM 15641]
          Length = 1262

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 40/218 (18%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPST 64
           +DL      +            + A AGSGKT  L QR+   LL  +             
Sbjct: 1   MDLSRLRPGQLASIKHLDGPLLICAGAGSGKTFTLTQRITWALLPGSGTNGSSFLNSIDE 60

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            L +T T  AA E+  R+   + A   +++ +                            
Sbjct: 61  ALVITFTNKAAGEIKDRIRAALRAEGMMTEALKV-------------------------- 94

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                G  + TIH  C  I+++  LEA++   F +A     +    EA    L  +   +
Sbjct: 95  ----DGAWISTIHGMCSRILREHALEADLDPAFELAMGADCQMARTEACACVLEEVKETD 150

Query: 185 NEELKKAFYEI-LEISNDEDIETLISDIISNRTALKLI 221
           +   +  F       + ++ I  L+ ++         +
Sbjct: 151 DNAYQALFAGFRTTQALEDSIGRLLDEVSYQTDGFASL 188


>gi|227523030|ref|ZP_03953079.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
 gi|227089848|gb|EEI25160.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
          Length = 743

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 54/211 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            K ++           + A AGSGKT +L  R+  ++  N   P  +L +T T  AA EM
Sbjct: 11  NKDQKDAVIHTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                       E+   + V T HA
Sbjct: 71  RERVSKLLD--------------------------------------ESGDDVWVSTFHA 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS------------TLASIMLDNNE 186
            C  I+++   +      F IAD  + + L++   +              L+SI    N+
Sbjct: 93  LCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKND 152

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTA 217
            L     +  +   D D + +++D+     A
Sbjct: 153 LLTP---KAFKAQADSDFDQIVADVYERYQA 180


>gi|304385365|ref|ZP_07367710.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM
           20284]
 gi|304328572|gb|EFL95793.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM
           20284]
          Length = 760

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 67/190 (35%), Gaps = 45/190 (23%)

Query: 15  DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      +Q           + A AGSGKT +L  RV  L+   + +P  +L +T T 
Sbjct: 8   DLLKGLNDMQQQAVQTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTN 67

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                        + 
Sbjct: 68  KAAREMRERVANLLGEVA--------------------------------------SEIW 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN-EELKKA 191
           V T HA C  I+++   +      F+IAD  + + LI    K  LA +  D    + +  
Sbjct: 90  VSTFHALCVRILRRDIEQIGYNRAFSIADPSEQRTLI----KHVLADLNYDPKVYDPRSV 145

Query: 192 FYEILEISND 201
             +I    ND
Sbjct: 146 LGKISNAKND 155


>gi|167756539|ref|ZP_02428666.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402]
 gi|237733137|ref|ZP_04563618.1| ATP-dependent DNA helicase [Mollicutes bacterium D7]
 gi|167702714|gb|EDS17293.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402]
 gi|229383819|gb|EEO33910.1| ATP-dependent DNA helicase [Coprobacillus sp. D7]
          Length = 714

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            E  +L+++ + E     D      + A AGSGKT ++  R+  L+      P  +L +T
Sbjct: 1   MELDELLNKNQKEAATYLD--SHLRIIAGAGSGKTRVVTYRIAYLIDEIGVDPRKILAIT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++                                          G
Sbjct: 59  FTNKAANEMKERITSLLGP-------------------------------------HALG 81

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            L V TIH+ C  I+++     N  S+F I DEE  K LI++   + 
Sbjct: 82  SL-VCTIHSLCVRILRRHINVINYPSNFMIMDEEDQKALIKKIYNNL 127


>gi|146296855|ref|YP_001180626.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410431|gb|ABP67435.1| ATP-dependent DNA helicase PcrA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 714

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 43/186 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ++ + +   EQL A         V A AGSGKT ++  R+  +L    A PS +L +T T
Sbjct: 1   MEWLKELNKEQLEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLAKPSNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ ++++                                     +E+   +
Sbjct: 61  NKAADEMKERIKKLVS-------------------------------------VESFAEM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+ C  I++        +++F I D +   +L++E        + +D  +   K 
Sbjct: 84  WVSTFHSACAKILRMEAHNIGFSNNFVIFDMQDRNQLLKEC----FTKLNIDEEKLELKF 139

Query: 192 FYEILE 197
              ++ 
Sbjct: 140 VSRLIS 145


>gi|188585469|ref|YP_001917014.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350156|gb|ACB84426.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 1161

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 20/171 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77
                  +  D  ++  V A AGSGKT  LV R++  +++       ++ +T T+ AAAE
Sbjct: 10  DQNQRDRIIEDLDQNILVEAGAGSGKTRSLVDRMVAQVVSGRYRVDEIVAITFTRKAAAE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R    +             +  +I                    L    G  + TIH
Sbjct: 70  LRERFQNRLEEEYQKDYSPEVKDNIEI-------------------ALRNIEGTFLGTIH 110

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +F   ++++ P+EA +   F   DE +S  + EE  +  L  + L+  + L
Sbjct: 111 SFAANLLRERPVEAGLDPEFQELDELESAIMEEEVFEEYLLYVRLNREDLL 161


>gi|289757034|ref|ZP_06516412.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85]
 gi|289712598|gb|EFD76610.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85]
          Length = 650

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++   +                                        
Sbjct: 76  TNKAAAEMRERVVGLVGEKARY-------------------------------------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|219556815|ref|ZP_03535891.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
 gi|289568920|ref|ZP_06449147.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
 gi|289542674|gb|EFD46322.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
          Length = 422

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 44/232 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++  + + ++         + A AGSGKT +L +R+  L+ A       +L +T 
Sbjct: 18  QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++   +                                        
Sbjct: 76  TNKAAAEMRERVVGLVGEKARY-------------------------------------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           + V T H+ C  I++        + S+F+I D + S++L++   +     I   +   L 
Sbjct: 98  MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            A   +     D      ++ +  +   L          ++R++   +    
Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207


>gi|42779415|ref|NP_976662.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987]
 gi|42735331|gb|AAS39270.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987]
          Length = 747

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|300118924|ref|ZP_07056635.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1]
 gi|298723540|gb|EFI64271.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1]
          Length = 747

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|16077729|ref|NP_388543.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221308498|ref|ZP_03590345.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221312821|ref|ZP_03594626.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221317745|ref|ZP_03599039.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221322024|ref|ZP_03603318.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|7674149|sp|O34580|PCRA_BACSU RecName: Full=ATP-dependent DNA helicase pcrA
 gi|2577965|emb|CAA75552.1| PcrA protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2632975|emb|CAB12481.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 739

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            ++ +  ++  + E +  +D      + A AGSGKT +L  R+  L+   +  P  +L +
Sbjct: 5   SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 63  TFTNKAAREMKERVESILGPGA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + + T H+ C  I+++      I  +F+I D      +I+   K 
Sbjct: 85  DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKE 131


>gi|148259238|ref|YP_001233365.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|326402391|ref|YP_004282472.1| DNA helicase II [Acidiphilium multivorum AIU301]
 gi|146400919|gb|ABQ29446.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5]
 gi|325049252|dbj|BAJ79590.1| DNA helicase II [Acidiphilium multivorum AIU301]
          Length = 728

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCL 68
            S+ +D ++  + E + A D      V A AG+GKT +L  R    LL   A P+ +L +
Sbjct: 1   MSDYLDRLNPAQREAVEAVD--GPVLVLAGAGTGKTRVLTTRFAHILLTRRAFPNQVLAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  ++   +                                      
Sbjct: 59  TFTNKAAREMRERVSALLGEPAE------------------------------------- 81

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            GL + T HA    ++++       TS+F+I D +   +L+++  ++
Sbjct: 82  -GLWLGTFHALAARMLRRHAELVGRTSNFSILDPDDQLRLLKQVMEA 127


>gi|301052017|ref|YP_003790228.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300374186|gb|ADK03090.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 747

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4]
 gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4]
          Length = 830

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 77/261 (29%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  + E ++ +       + A AGSGKT +L +R+  LL      P  +L +T T
Sbjct: 31  LLEGLNPQQREAVVHA--GSPLLIVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFT 88

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++   +                                        +
Sbjct: 89  NKAAAEMRERVAALVGPRA--------------------------------------NAM 110

Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST-------------- 176
            V T H+ C  I++ Q  L   + S+F+I D + S++L+    K                
Sbjct: 111 WVSTFHSSCVRILRAQAALLPGLNSNFSIYDSDDSRRLLTMISKDLELDTKRFSARLLAT 170

Query: 177 ----LASIMLDNNEELKKA-----------------FYEILEISNDEDIETLISDIISNR 215
               L + ++   E +  A                 + + L  +N  D + LI + ++  
Sbjct: 171 HISNLKNELVGPEEAVVAADQDPAELPRLIAKVYGHYQQRLRAANALDFDDLIGETVALL 230

Query: 216 TALKLIFFFFSYLWRRKIIEK 236
            A   I  ++   +R  ++++
Sbjct: 231 QAFPQIAEYYRRRFRHVLVDE 251


>gi|293606186|ref|ZP_06688550.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC
           43553]
 gi|292815446|gb|EFF74563.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC
           43553]
          Length = 764

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 45/222 (20%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++ +   EQ  A     + A V A AGSGKT +L  R+  L+    A P  LL +T T  
Sbjct: 2   MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  I+   +                                       GL +
Sbjct: 62  AAREMLARMSAILPIDTR--------------------------------------GLWI 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D          A K  + +  +D+ +   +   
Sbjct: 84  GTFHGLCNRMLRAHHRDAGLPQSFQILDVTDQLA----AIKRLMKANGVDDEKYPPRDVQ 139

Query: 194 EILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRRKII 234
             +  + +E +    +    ++R  L  ++  +    +R+ +
Sbjct: 140 RFINGAKEEGLRPQDVEAYDAHRRRLIEVYQLYEAQCQREGV 181


>gi|283956857|ref|ZP_06374330.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791583|gb|EFC30379.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 921

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 7/178 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L     + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGVRINEILALTFTKKAANEMQKRIIEAFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADEE-QSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           +S F +++E    +++     +  +    +  ++  +E +  F E+ +   +   + L
Sbjct: 125 SSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182


>gi|300361106|ref|ZP_07057283.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03]
 gi|300353725|gb|EFJ69596.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03]
          Length = 757

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 39/170 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           +  SE   L      ++           V A AGSGKT +L +R+  L+      P  +L
Sbjct: 9   EAMSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVL 68

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  RV +++   +                                    
Sbjct: 69  AITFTNKAATEMKERVQKLLGPAA------------------------------------ 92

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + + T HA C  I+++   +   +++F+IAD  +   LI+  +K  
Sbjct: 93  --DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 140


>gi|225861093|ref|YP_002742602.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230417|ref|ZP_06964098.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255440|ref|ZP_06979026.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502847|ref|YP_003724787.1| ATP-dependent deoxyribonuclease subunit A [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727192|gb|ACO23043.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238442|gb|ADI69573.1| ATP-dependent deoxyribonuclease, subunit A [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 1216

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K++F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|121998060|ref|YP_001002847.1| exodeoxyribonuclease V subunit beta [Halorhodospira halophila SL1]
 gi|121589465|gb|ABM62045.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Halorhodospira
           halophila SL1]
          Length = 1240

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 87/196 (44%), Gaps = 16/196 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT+ +    LRL+L +           P  +L +T T+AA  E+  R+
Sbjct: 19  GSRLIEASAGTGKTYTIAALYLRLVLNHGREAAYGQSLTPPQILVVTFTEAATRELRERI 78

Query: 83  LEIITAWSHLSDE-----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              +   +    +      L   +  +  + P +++ ++A  +L    E      V TIH
Sbjct: 79  RSRLAEAAAAFRDPDQAVELDPFLDGLLREYPQRAERAQAARVLELAAEWMDEAAVATIH 138

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A+C  ++++   ++   S F    E    +L+ E+ +    + +   + E  + F + + 
Sbjct: 139 AWCYRMLREHAFDSG--SLFTQDLETDPGELLAESVRDYWRTFVYPLDPEAFQLFRQAVG 196

Query: 198 ISNDEDIETLISDIIS 213
            ++ + ++  ++ +I 
Sbjct: 197 AADPDALQRALARLIG 212


>gi|223932475|ref|ZP_03624477.1| recombination helicase AddA [Streptococcus suis 89/1591]
 gi|302023673|ref|ZP_07248884.1| ATP-dependent exonuclease subunit A [Streptococcus suis 05HAS68]
 gi|223898929|gb|EEF65288.1| recombination helicase AddA [Streptococcus suis 89/1591]
          Length = 1217

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 43/227 (18%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR+L  L        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +                          DM   RHL    L       + T+ +F
Sbjct: 89  ERIEKNLNE------------------TIAETMDMDLRRHLSAQ-LADLTKADIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++  +     I+  F I  DE +   L +E                    F + LE 
Sbjct: 130 TQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQL---------------FADYLEQ 174

Query: 199 SNDEDIETLISDIISNRTA--------LKLIFFFFSYLWRRKIIEKS 237
             +     L+ +   NR           ++  F  S     K +++ 
Sbjct: 175 DENGAFRKLVRNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWLKEQ 221


>gi|315613168|ref|ZP_07888078.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC
           49296]
 gi|315314730|gb|EFU62772.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC
           49296]
          Length = 1217

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISQQIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIML-DNNEELKKAFYEILE 197
            +  + +     +I  +F I  +E +   L  E            +N E+  +       
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLLLKNEVFHQVFEEHYQGENKEKFSRLVKNFAG 189

Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              DE            R  + K+  F  S    +K +  S  
Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLSDSFL 223


>gi|258616015|ref|ZP_05713785.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO]
          Length = 706

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +E ++ ++  + E +L +D      + A AGSGKT +L  R+  L+     +P  +L +T
Sbjct: 5   AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  I+ +                                         
Sbjct: 63  FTNKAAKEMKERVNAILASGGE-------------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|255018267|ref|ZP_05290393.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL F2-515]
          Length = 241

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|225012823|ref|ZP_03703257.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
 gi|225003097|gb|EEG41073.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
          Length = 775

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 48/217 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ID +++  +++           V A AGSGKT +L  R+  L+ +     ++L LT T 
Sbjct: 8   YIDSLNE--AQRGPVLHKEGPLIVIAGAGSGKTRVLTYRIAHLMASGVDSFSILALTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++      +                                     L 
Sbjct: 66  KAAREMKARIGALVGEGEAKN-------------------------------------LW 88

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNE----- 186
           + T H+    I++Q   +    S+F I D + S +LI    K   L   +    +     
Sbjct: 89  MGTFHSVFARILRQEADKLGFPSNFTIYDTQDSDRLISSIIKEMGLDKDIYKYKQVRSRI 148

Query: 187 -ELKKAFYEILEISNDEDIETLISDIISNRTALKLIF 222
              K +   +    ND D++   SD +S R  +  I+
Sbjct: 149 SAFKNSLITVKAYFNDLDLQE--SDTMSKRPQMGEIY 183


>gi|307266291|ref|ZP_07547831.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918669|gb|EFN48903.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 440

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 63/168 (37%), Gaps = 42/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +  ++  + E ++ ++      + A AGSGKT +L +R+  L+      PS +L +
Sbjct: 1   MNSILGSLNDKQREAVMTTE--GPLLILAGAGSGKTRVLTRRIAYLIKEKKVSPSNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV +++                                          
Sbjct: 59  TFTNKAAEEMKTRVEDLLGYI--------------------------------------- 79

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           G L V T H+ C  I+++   +     +F I D    K LI+E  K  
Sbjct: 80  GDLWVSTFHSACVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127


>gi|159039726|ref|YP_001538979.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205]
 gi|157918561|gb|ABV99988.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205]
          Length = 794

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++    ++   +       + A AGSGKT +L  R+  LL A   HP  ++ +T T
Sbjct: 32  LLDGLNG--PQRDAVTHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARQVHPGEIIAITFT 89

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++   + L                                      +
Sbjct: 90  NKAAGEMKDRVAQLVGPRARL--------------------------------------M 111

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I++     A + S F+I D + S++L++   +  
Sbjct: 112 WVSTFHSACVRILRAEHEHAGVKSTFSIYDADDSRRLMQLVAREL 156


>gi|84501742|ref|ZP_00999914.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597]
 gi|84390363|gb|EAQ02922.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597]
          Length = 862

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D ++  + E + A D      + A AG+GKT  L  R++ LL  A A P+ +L +T T
Sbjct: 27  YLDELNPAQREAVEALD--GPVLMLAGAGTGKTKALTARIVHLLSTARAAPNEILAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                          G  
Sbjct: 85  NKAAKEMKARVGRMLGE-------------------------------------HVEGMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  ++++      + S F I D +   +L+++     + +  +D      + 
Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSSFTILDTDDQIRLMKQ----LIRANNIDEKRWPARQ 163

Query: 192 FYEILEISNDEDI 204
              I++   +   
Sbjct: 164 LAGIIDNWKNRAW 176


>gi|323357219|ref|YP_004223615.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273590|dbj|BAJ73735.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 826

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
            ++ +  ++  + E    +   ++  + A AGSGKT +L +R+  LL    A+PS +L +
Sbjct: 32  DADLLQGLNGPQRE--AVTYRGQALLIVAGAGSGKTSVLTRRIASLLRTREAYPSQILAI 89

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV ++I   +                                      
Sbjct: 90  TFTNKAAGEMRERVHQLIGQKA-------------------------------------- 111

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            G+ + T H+ C  I+++   +   T  F I D   S+ LI+   K 
Sbjct: 112 DGMWISTFHSACVRILRREAEQFGFTKAFTIYDSGDSRALIKRLVKE 158


>gi|291483101|dbj|BAI84176.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 739

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            ++ +  ++  + E +  +D      + A AGSGKT +L  R+  L+   +  P  +L +
Sbjct: 5   SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 63  TFTNKAAREMKERVESILGPGA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + + T H+ C  I+++      I  +F+I D      +I+   K 
Sbjct: 85  DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTGDQLSVIKGILKE 131


>gi|190576381|ref|YP_001974226.1| DNA-dependent helicase II [Stenotrophomonas maltophilia K279a]
 gi|190014303|emb|CAQ47950.1| putative DNA helicase II [Stenotrophomonas maltophilia K279a]
          Length = 730

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L  R+  L  +       +  
Sbjct: 2   DVSHLLDGLNPAQREAVSA--PPGHHLVLAGAGSGKTRVLTHRIAWLHEVEGVPTHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR+   +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRIDAQLPNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++    +A +   F + D +   +L     K  + ++ LD+ + 
Sbjct: 84  --GMWIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQLRL----VKRVVQALELDDGKY 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    DE 
Sbjct: 138 PAKQIAWWINAQKDEG 153


>gi|146318409|ref|YP_001198121.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 05ZYH33]
 gi|146320605|ref|YP_001200316.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 98HAH33]
 gi|253750625|ref|YP_003024062.1| exonuclease RexA [Streptococcus suis BM407]
 gi|251764567|sp|A4W0M7|ADDA_STRS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|251764570|sp|A4VUD2|ADDA_STRSY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|145689215|gb|ABP89721.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Streptococcus suis
           05ZYH33]
 gi|145691411|gb|ABP91916.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Streptococcus suis
           98HAH33]
 gi|251819057|emb|CAZ55679.1| exonuclease RexA [Streptococcus suis BM407]
 gi|292558201|gb|ADE31202.1| putative exonuclease RexA [Streptococcus suis GZ1]
          Length = 1227

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 29/220 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR+L  L        L   T T  AA E+ 
Sbjct: 40  TAEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELK 99

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +                         +DM   RHL    L       + T+ +F
Sbjct: 100 ERIEKKLNE------------------TIAETTDMELRRHLSAQ-LADLTKADIGTMDSF 140

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE- 197
            + ++  +     I+  F I  DE +   L +E      A  + ++      AF +++  
Sbjct: 141 TQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQLFADYLEEDE---NGAFRKLVRN 197

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            S +    +    ++      ++  F  S     K +++ 
Sbjct: 198 FSGNRKDNSGFRQVV-----YQVHDFSQSTSSPTKWLKEQ 232


>gi|15613211|ref|NP_241514.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
 gi|10173262|dbj|BAB04367.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 747

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      ++           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 17  LAGLNDRQREAVKHTEGPLLLMAGAGSGKTRVLTHRIAYLLREKGVAPWNVLAITFTNKA 76

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++   +                                        + + 
Sbjct: 77  AREMKDRVAQLVGPIA--------------------------------------DDIWIS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++       + +F I D      +I++  K+
Sbjct: 99  TFHSMCVRILRRDIDRIGYSRNFTILDSTDQLSVIKQILKN 139


>gi|321314390|ref|YP_004206677.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5]
 gi|320020664|gb|ADV95650.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5]
          Length = 739

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            ++ +  ++  + E +  +D      + A AGSGKT +L  R+  L+   +  P  +L +
Sbjct: 5   SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+   +                                      
Sbjct: 63  TFTNKAAREMKERVESILGPGA-------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + + T H+ C  I+++      I  +F+I D      +I+   K 
Sbjct: 85  DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKE 131


>gi|314964915|gb|EFT09014.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA2]
 gi|315103904|gb|EFT75880.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA2]
 gi|327325604|gb|EGE67403.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL103PA1]
          Length = 810

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++     Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|302874255|ref|YP_003842888.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307689481|ref|ZP_07631927.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302577112|gb|ADL51124.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 753

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL      EQ   A+       + A AGSGKT +L  R+  ++     + S +L +T T
Sbjct: 1   MDLRKLLNQEQYKAATTIEGPLLILAGAGSGKTRVLTYRIAHMIKELGIYSSQILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  I+                                       +    +
Sbjct: 61  NKAAQEMRERIRGIVG--------------------------------------DVVDNM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +F I D    K L+++  K  
Sbjct: 83  WVSTFHSSCVRILRREIDKIGYNKNFTIYDTYDQKTLLKQCMKEL 127


>gi|307067686|ref|YP_003876652.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Streptococcus
           pneumoniae AP200]
 gi|306409223|gb|ADM84650.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Streptococcus
           pneumoniae AP200]
          Length = 1216

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K++F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|224282901|ref|ZP_03646223.1| UvrD/REP helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140060|ref|ZP_07802253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132570|gb|EFR50187.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB
           41171]
          Length = 885

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A         + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQILAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLEGLIGPVAQ--------------------------------------RMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D    ++L++
Sbjct: 96  VSTFHSACVRILRRDGQSIGLASGFSIYDTADCERLVK 133


>gi|205372453|ref|ZP_03225266.1| PcrA [Bacillus coahuilensis m4-4]
          Length = 739

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 44/189 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQ  A         + A AGSGKT +L  R+  L++     P  +L +T T  
Sbjct: 8   LLNGMNPEQKKAVQTTDGPLLLMAGAGSGKTRVLTHRIAYLMVEKQIAPYNILAITFTNK 67

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +I+   +                                        + V
Sbjct: 68  AAREMKERISKILGGAAE--------------------------------------DIWV 89

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++         +F I D        +   KS L    +D  +   +A  
Sbjct: 90  STFHSMCVRILRRDIDRMGYNRNFTILDSGDQ----QSVVKSILKDKNIDPKKFDPRAIL 145

Query: 194 EILEISNDE 202
            I+  + +E
Sbjct: 146 GIISNAKNE 154


>gi|163746115|ref|ZP_02153474.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45]
 gi|161380860|gb|EDQ05270.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45]
          Length = 805

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +      Q  A +       + A AG+GKT  L  R++ LL    A P+ +L +T T  
Sbjct: 27  YLEGLNPAQRAAVETMDGPVLMLAGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFTNK 86

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM +RV +++                                          G   +
Sbjct: 87  AAREMKNRVGQMLGQQVE-------------------------------------GMPWL 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T HA C  ++++      + S+F I D +   +L+++     +A+  +D+     +   
Sbjct: 110 GTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LVAAEGIDDKRWPARMLA 165

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 166 GLIDGWKNRAL 176


>gi|330832698|ref|YP_004401523.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3]
 gi|329306921|gb|AEB81337.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3]
          Length = 1217

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 43/227 (18%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR+L  L        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +                          DM   RHL    L       + T+ +F
Sbjct: 89  ERIEKNLNE------------------TIAETMDMDLRRHLSAQ-LADLTKADIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++  +     I+  F I  DE +   L +E                    F + LE 
Sbjct: 130 TQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQL---------------FADYLEQ 174

Query: 199 SNDEDIETLISDIISNRTA--------LKLIFFFFSYLWRRKIIEKS 237
             +     L+ +   NR           ++  F  S     K +++ 
Sbjct: 175 DENGAFRKLVRNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWLKEQ 221


>gi|269215900|ref|ZP_06159754.1| ATP-dependent DNA helicase [Slackia exigua ATCC 700122]
 gi|269130850|gb|EEZ61926.1| ATP-dependent DNA helicase [Slackia exigua ATCC 700122]
          Length = 1239

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 43/209 (20%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCL 68
           +    +++         +V+A AGSGKT  L QR+   LL  +             ++ +
Sbjct: 5   AFNPDQRVCVETLDAPLFVAAGAGSGKTFTLTQRIAWALLDGSGSDGGPFASSIDEIMAI 64

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA+E+  RV   + A      E L+ E  K+                        
Sbjct: 65  TFTDKAASEIKARVKSTLRA------EGLAEESLKV------------------------ 94

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + TIH  C  ++++  LE  I   F +A +      + +A +  L      +    
Sbjct: 95  DSAWISTIHGACARVLREHALELGIDPDFQMASDGFVADALAQAVEEVLIGHEEGSANGS 154

Query: 189 KKAFYEIL----EISNDEDIETLISDIIS 213
             A +              +E ++ DI  
Sbjct: 155 VDALFAAYPPRSTGHGGTSVEDMLMDIAQ 183


>gi|7329749|emb|CAB82770.1| DNA helicase II [Prochlorococcus marinus str. PAC2]
          Length = 624

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 20/177 (11%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           S  I L    +S+ L          V A AGSGKT  L  R+  L++     PS++L +T
Sbjct: 4   SNNIFLNGLNQSQSLAVDHFDGPLLVIAGAGSGKTRALTHRIAHLIIEYKVDPSSILAVT 63

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETP 128
            T  AA EM  R+           + +L+  +  I  +KP +  ++++ R +   I    
Sbjct: 64  FTNKAAREMKDRL-----------ELLLAKRLAIITHEKPWSALEVAEQRQIRNRIYREI 112

Query: 129 GG-LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
              L + T HA    +++    +F     +  T  F+I DE  ++ LI+E     L 
Sbjct: 113 SRELWIGTFHALFARLLRFDIDKFKDPEGLTWTRQFSIYDETDAQSLIKEIVTQDLQ 169


>gi|331702041|ref|YP_004399000.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129384|gb|AEB73937.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL
           B-30929]
          Length = 744

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 43/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L    K ++           + A AGSGKT +L  R+  ++  N   P  +L +T T  A
Sbjct: 7   LAGLNKDQKDAVIHTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHIMPWRILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++                                            + V 
Sbjct: 67  AREMRERVSKLLGEGG--------------------------------------NDVWVS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I+++          F IAD  + + L     K  L  + +D  +   +A   
Sbjct: 89  TFHALCVRILRRHIDLLGYNKAFTIADTSEQRTL----VKRVLRDLNIDPKKFDPRAVLS 144

Query: 195 ILEISNDE 202
            +  + ++
Sbjct: 145 AISNAKND 152


>gi|314924241|gb|EFS88072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL001PA1]
          Length = 810

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++     Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLADLNEPQRDAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|16800937|ref|NP_471205.1| ATP-dependent DNA helicase [Listeria innocua Clip11262]
 gi|16414372|emb|CAC97101.1| ATP-dependent DNA helicase [Listeria innocua Clip11262]
          Length = 731

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 5   ELVDGLN--PEQRKAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 63  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 85  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129


>gi|228476304|ref|ZP_04061005.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119]
 gi|228269587|gb|EEK11093.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119]
          Length = 730

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +  K +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  ++   + +                                      + + T 
Sbjct: 67  EMKERVEHLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 89  HSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|114322010|ref|YP_743693.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228404|gb|ABI58203.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii MLHE-1]
          Length = 725

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 41/167 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + S+ I  ++  + E + A+     + V A AGSGKT +L +R   L+ +  A P  ++ 
Sbjct: 6   DVSDLIADLNDAQREAVCAA--LGRSLVLAGAGSGKTRVLTRRAAWLVRVEGASPFGIMA 63

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM HR+ E++   +                                     
Sbjct: 64  VTFTNKAAAEMRHRIGELLGIRT------------------------------------- 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             G+ V T H     +++    +A +   F I D +   +LI+   +
Sbjct: 87  -AGMWVGTFHGLSHRLLRMHAADAGLPETFQILDSDDQLRLIKRVMR 132


>gi|56751936|ref|YP_172637.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
 gi|56686895|dbj|BAD80117.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
          Length = 794

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 23/174 (13%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D +SQ  + Q  A +  +    V A AGSGKT  L  R+  LL  +   P  +L +T T 
Sbjct: 4   DFLSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVGPENILAVTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGG 130
            AA EM  R+  +            + ++ ++Q  +P  +     +  L + +  E    
Sbjct: 64  KAAKEMKERLERLF-----------AQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKD 112

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSH-------FAIADEEQSKKLIEEAKKSTL 177
           L + T HA C  I++ F ++     +       F+I DE   + LI+E   + L
Sbjct: 113 LWIGTFHAICARILR-FDIDKYCDPNGRRWTKQFSIFDENDVQGLIKEIVGNQL 165


>gi|258647140|ref|ZP_05734609.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259]
 gi|260853104|gb|EEX72973.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259]
          Length = 794

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 39/162 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D +++++ + +   D    + + A AGSGKT +L  +V  LL     P  +L LT T  A
Sbjct: 4   DFLNESQRQAVQYCD--GPSLIIAGAGSGKTRVLTYKVAYLLQNGYQPWEILALTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++   +                                        L   
Sbjct: 62  AREMRERIAQLVEPAAV-------------------------------------AMLWAG 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++       + S F+I D   +K L++   +  
Sbjct: 85  TFHSIFARILRIEHAALGLPSTFSIYDAADAKSLVKSIIREL 126


>gi|118466048|ref|YP_880325.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104]
 gi|118167335|gb|ABK68232.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104]
          Length = 774

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 83/216 (38%), Gaps = 52/216 (24%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-N 59
           ++    +  SE   L+     +Q  A     S   + A AGSGKT +L +RV  L+ A  
Sbjct: 3   VHVTDAKPVSEAEQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRVAYLIAARG 62

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
                +L +T T  AAAEM  RV+ ++                            ++AR 
Sbjct: 63  VGVGQVLAITFTNKAAAEMRERVVRLVG---------------------------NRAR- 94

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS--- 175
                      + V T H+ C  I++        + S+F+I D + S++L++   +    
Sbjct: 95  ----------AMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRRLLQMIGRDMGL 144

Query: 176 --------TLASIMLDNNEELKKAFYEILEISNDED 203
                    LA+ + +   EL      +  +++D D
Sbjct: 145 DIKRYSPRLLANAISNLKNELIDPAAAVANLTDDSD 180


>gi|310644241|ref|YP_003949000.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2]
 gi|309249192|gb|ADO58759.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2]
          Length = 774

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 45/192 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           E +  ++Q + + + A D      + A AGSGKT +L  R+  L+      P  +L +T 
Sbjct: 8   EAVARLNQPQRQAVEAVD--GPLLIMAGAGSGKTRVLTHRIAYLIATRKTAPWGILAITF 65

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV ++I                                            
Sbjct: 66  TNKAAREMQDRVSKLIGPQGR--------------------------------------D 87

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++       TS+F+I D      +I    +S +  + +D  +   K
Sbjct: 88  VWVSTFHSMCVRILRRDIERIGFTSNFSILDSTDQLSVI----RSCMKDLNIDTKKFEPK 143

Query: 191 AFYEILEISNDE 202
           A   ++  + +E
Sbjct: 144 AVQSMMSTAKNE 155


>gi|238854177|ref|ZP_04644524.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4]
 gi|238833253|gb|EEQ25543.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4]
          Length = 747

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            SE   L      ++           V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV +++   +                                      
Sbjct: 61  TFTNKAATEMKERVQKLLGPAA-------------------------------------- 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++   +   +++F+IAD  +   LI+  +K  
Sbjct: 83  DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 130


>gi|221632334|ref|YP_002521555.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159]
 gi|221156871|gb|ACM05998.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159]
          Length = 771

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 46/225 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           LI     + +  +       V A  GSGKT +L  RV  L+ +  A P  ++ +T T  A
Sbjct: 46  LIGLDADQCVAVTTTEGPVLVVAGPGSGKTRVLTHRVAYLIGSGRARPWQIVAVTFTNKA 105

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+  ++                                       E+   ++  
Sbjct: 106 AREIRERLGGLLGT-------------------------------------ESAQLVQAG 128

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK-AFY 193
           T H+ C  I+++      +   F I DEE    L+++A    L  + LD      +    
Sbjct: 129 TFHSLCVRILRRDGYRIGLEPAFTIYDEEDQLALVKQA----LRDLGLDPQRFSPRMLLG 184

Query: 194 EILEISNDEDIETLISDIISNRT---ALKLIFFFFSYLWRRKIIE 235
            +    ND+   + +  +  +     A ++   +  YL R + ++
Sbjct: 185 RLSRAKNDQHSPSDLQSMAQSYWDEVAARVYERYAQYLQRAQAVD 229


>gi|148998405|ref|ZP_01825847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70]
 gi|168576141|ref|ZP_02722035.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|168577182|ref|ZP_02722997.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|168577235|ref|ZP_02723036.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|168577251|ref|ZP_02723047.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|194397993|ref|YP_002037761.1| exonuclease RexA [Streptococcus pneumoniae G54]
 gi|251764542|sp|B5E4P5|ADDA_STRP4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|147755802|gb|EDK62847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70]
 gi|183577186|gb|EDT97714.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|183577191|gb|EDT97719.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|183577238|gb|EDT97766.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|183577934|gb|EDT98462.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|194357660|gb|ACF56108.1| exonuclease RexA [Streptococcus pneumoniae G54]
          Length = 1216

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K++F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|116334214|ref|YP_795741.1| superfamily I DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099561|gb|ABJ64710.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis ATCC 367]
          Length = 750

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           E +  ++  ++E +L ++      V A AGSGKT +L  RV  L+   N  P  +L +T 
Sbjct: 5   ELLTGMNDKQTEAVLQTE--GPLLVLAGAGSGKTRVLTHRVAYLIEHNNVMPWRILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV++++                                            
Sbjct: 63  TNKAAKEMRERVIKLLGPDG--------------------------------------ND 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + V T HA C  I+++   +      F IAD  + + LI+   + 
Sbjct: 85  VWVSTFHALCVRILRRDADKLGYNRAFTIADPGEQRTLIKRVLQQ 129


>gi|95930575|ref|ZP_01313310.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95133410|gb|EAT15074.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 747

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 41/159 (25%)

Query: 20  TKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +Q+ A + P     + A AGSGKT  L  RV+ L+      P  +L +T T  AA E
Sbjct: 8   LNPQQIEAVEHPGGPLLILAGAGSGKTSTLTGRVIHLIRQQGVPPWRILAVTFTNKAAKE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   +                                              V T H
Sbjct: 68  MKERIERALPEGEMP---------------------------------------WVATFH 88

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + C  I+++        + F I D++   +L++   K  
Sbjct: 89  STCVRILRRDISALGFDTSFTIYDDQDQDRLLKNILKEL 127


>gi|319399870|gb|EFV88117.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis FRI909]
          Length = 729

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +    +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  ++   + +                                      + + T 
Sbjct: 67  EMKARVEHLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I+E  KS
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKEVLKS 127


>gi|314936042|ref|ZP_07843391.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655859|gb|EFS19602.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 730

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +  K +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  ++   + +                                      + + T 
Sbjct: 67  EMKERVEHLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 89  HSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|253751554|ref|YP_003024695.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
           SC84]
 gi|253753455|ref|YP_003026596.1| ATP-dependent exonuclease subunit A [Streptococcus suis P1/7]
 gi|251815843|emb|CAZ51451.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
           SC84]
 gi|251819701|emb|CAR45515.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
           P1/7]
 gi|319757986|gb|ADV69928.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
           JS14]
          Length = 1216

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 29/220 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR+L  L        L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +                         +DM   RHL    L       + T+ +F
Sbjct: 89  ERIEKKLNE------------------TIAETTDMELRRHLSAQ-LADLTKADIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE- 197
            + ++  +     I+  F I  DE +   L +E      A  + ++      AF +++  
Sbjct: 130 TQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQLFADYLEEDE---NGAFRKLVRN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            S +    +    ++      ++  F  S     K +++ 
Sbjct: 187 FSGNRKDNSGFRQVV-----YQVHDFSQSTSSPTKWLKEQ 221


>gi|154174808|ref|YP_001407581.1| putative recombination protein RecB [Campylobacter curvus 525.92]
 gi|112803782|gb|EAU01126.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter curvus
           525.92]
          Length = 933

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           R   + A+AGSGKT  L  R + L+L+ A+ + ++ LT TK AA EM  RV+E       
Sbjct: 3   RYLALKASAGSGKTFALSVRFIALILSGANIAEIVALTFTKKAANEMKERVVETF----- 57

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L+ E   +E+  I+       D   A             LK+ T  +F   I++QF L  
Sbjct: 58  LNLEKKPSELAAIREILELGEDKILALRDERMADFLQSDLKIGTFDSFFTGILRQFSLNL 117

Query: 152 NITSHFAIADE---EQSKKLIEEAKKS-----TLASIMLDNNEELKKAFYEILEISNDED 203
            +++ F+++ +    Q +K +E+  +      +LA  ++   +     F  +     + D
Sbjct: 118 GLSADFSVSSDLTNLQRQKFVEKISRDPSLLRSLAEFIVAAEKSQNSFFETLERFYENFD 177


>gi|298492943|ref|YP_003723120.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708]
 gi|298234861|gb|ADI65997.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708]
          Length = 776

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 20/199 (10%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ID +S     Q  A +       V A AGSGKT  L  R+  L+L +  +P  ++ +T T
Sbjct: 5   IDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVNPENIIAVTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  + +    L +        K+      +    K++    TI +    +
Sbjct: 65  NKAAREMKDRIQRLFSEQLALKEYG-----QKLDSLPEYEQTQLKSKVYRTTIKD----M 115

Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
              T H+    I++    ++  E       +F+I DE   + LI+E        + LD+ 
Sbjct: 116 WCGTFHSLFSRILRYDIEKYQDEKGRRWNKNFSIFDESDVQSLIKEI---VTKDLNLDSK 172

Query: 186 EELKKAFYEILEISNDEDI 204
           +   K+    +  + ++  
Sbjct: 173 KFEPKSVRYAISNAKNQGF 191


>gi|15128573|dbj|BAB62752.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           criceti]
          Length = 495

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 33/233 (14%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           S+  + + +T  +         +  VSA+AGSGKT ++V+R++ +L    + S L   T 
Sbjct: 23  SQAEERLPRTPEQIEAIYSNGTNVLVSASAGSGKTFVMVERIIDMLKRGVNISQLFISTF 82

Query: 71  TKAAAAEMSHRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           T  AA E+  R+ + +    +   D+ L   ++   G   N                   
Sbjct: 83  TVKAAGELKERIEDKLIKEIAKTQDQALKQHLSAQLGDIQN------------------- 123

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEEL 188
              + T+ AF + ++  +     ++ +F I  D+ +   L  E       S M   +  +
Sbjct: 124 -ADIGTMDAFAQKLVNTYGYSLGVSPNFRIMQDKSEQDILKNEVYGDLFTSYMTGPDSHI 182

Query: 189 KKAFYEIL--EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            K        +  +      ++  + +         F  S    +  +E++  
Sbjct: 183 FKQTVRNFTGQGKDSTGFRQVVYAVHA---------FSQSTADPKAWLEETFL 226


>gi|294807341|ref|ZP_06766153.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294445471|gb|EFG14126.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71
           + I +    Q  A       + V A AGSGKT +L  ++  LL      +P  +L LT T
Sbjct: 4   NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                           M +AR+L           
Sbjct: 64  NKAAREMKERIARQVG--------------------------MERARYL----------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++        TS F I D   SK L+    K  
Sbjct: 87  WMGTFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLLRSIIKEM 131


>gi|315930994|gb|EFV09969.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 705

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 7/178 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDVKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADEE-QSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           +S F +++E    +++     +  +    +  ++  +E +  F E+ +   +   + L
Sbjct: 125 SSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182


>gi|315093785|gb|EFT65761.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL060PA1]
          Length = 810

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++     Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|310287344|ref|YP_003938602.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17]
 gi|309251280|gb|ADO53028.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17]
          Length = 885

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A         + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQILAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLEGLIGPVAQ--------------------------------------RMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D    ++L++
Sbjct: 96  VSTFHSACVRILRRDGQSIGLASGFSIYDTADCERLVK 133


>gi|289435096|ref|YP_003464968.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171340|emb|CBH27882.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 731

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+     +P  +L +T 
Sbjct: 5   ELVDGLN--PEQKRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 63  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 85  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129


>gi|227889452|ref|ZP_04007257.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC
           33200]
 gi|227849930|gb|EEJ60016.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC
           33200]
          Length = 772

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 41/230 (17%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           +  SE   L      ++           V A AGSGKT +L +R+  L+      P  +L
Sbjct: 23  EAMSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVL 82

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  RV +++   +                                    
Sbjct: 83  AITFTNKAATEMKERVQKLLGPAA------------------------------------ 106

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185
               + + T HA C  I+++   +   +++F+IAD  +   LI+  +K   +   M D  
Sbjct: 107 --DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPK 164

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             L        ++   +D +   + +    TA ++   +   L R KI++
Sbjct: 165 AILGAISNGKNDLLTPKDFKDQAASMFEKVTA-QVYSEYQHRLKRDKIMD 213


>gi|242371786|ref|ZP_04817360.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           M23864:W1]
 gi|242350487|gb|EES42088.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           M23864:W1]
          Length = 729

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +    +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV +++   + +                                      + + T 
Sbjct: 67  EMKQRVEQLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|153951355|ref|YP_001398782.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938801|gb|ABS43542.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 921

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++EI       +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIEIFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                 E+ K+ GK   +   +  A+      L T   LK+ T  AF   I++ F L   
Sbjct: 68  KTSECNELCKLLGKDKEELISLRNAKK--EEFLRT--ELKISTFDAFFGKILRVFALNLG 123

Query: 153 ITSHFAIADE 162
           ++S F +++E
Sbjct: 124 LSSDFTMSEE 133


>gi|254686688|ref|ZP_05150546.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724764|ref|ZP_05186547.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A1055]
          Length = 747

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [Desulfitobacterium hafniense Y51]
 gi|89336085|dbj|BAE85680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 760

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 48/234 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           SE   L      ++           + A AGSGKT +L  R+  L+     P  +L +T 
Sbjct: 4   SEMYRLEDLNPVQRQAVEHREGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++ +                                         G
Sbjct: 64  TNKAAQEMRDRVYSLVGSEGR--------------------------------------G 85

Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           L V T H+ C  I++ +       +  F I D      LI    KS +  + LD  +   
Sbjct: 86  LWVATFHSACVRILRSEIGYLPGYSRSFVIYDSGDQLALI----KSCMKELNLDEKKFAP 141

Query: 190 KAFYEILEISNDEDIETLISDIISNR--TALKLIFFFFSYLWRRKIIEKSLWSI 241
           +A   ++  + ++    L  +  S R     +        L+++K++  +    
Sbjct: 142 RAIEAVISDAKNK---LLTPEDFSRRAKDYFEQKAERVYELYQKKLLANNALDF 192


>gi|222086413|ref|YP_002544947.1| DNA helicase II protein [Agrobacterium radiobacter K84]
 gi|221723861|gb|ACM27017.1| DNA helicase II protein [Agrobacterium radiobacter K84]
          Length = 828

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ  A +       V A AG+GKT +L  R+  +L  N A PS +L +T T 
Sbjct: 51  DYLTGLNPEQTEAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTNRAFPSQILAVTFTN 110

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                                          G   
Sbjct: 111 KAAREMKERVALLVGGAVE-------------------------------------GMPW 133

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++      ++S F I D +   +LI++     + +  LD+     K F
Sbjct: 134 LGTFHSIGVKLLRRHSELVGLSSSFTILDTDDVIRLIKQ----LIQAEGLDDKRWPAKQF 189

Query: 193 YEILEISNDEDI 204
             +++   ++ +
Sbjct: 190 AGMIDTWKNKGL 201


>gi|196250519|ref|ZP_03149210.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
 gi|196210009|gb|EDY04777.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
          Length = 724

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L    K +Q           + A AGSGKT +L  R+  L+   +  P  +L +T T  A
Sbjct: 9   LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMRERVQALLGGAAE--------------------------------------DVWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F+I D      +I+   K 
Sbjct: 91  TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVIKAILKE 131


>gi|293569138|ref|ZP_06680445.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071]
 gi|291588185|gb|EFF20026.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071]
          Length = 744

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S+ + L      ++           + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 2   SSKAVLLNGMNPRQKEAVLHTDGPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAI 61

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  I+ +                                        
Sbjct: 62  TFTNKAAKEMKERVNAILASGGE------------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + V T H+ C  I+++         +F I D  +   L++   K  
Sbjct: 85  -DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131


>gi|282877529|ref|ZP_06286347.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
 gi|281300353|gb|EFA92704.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
          Length = 1082

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    ++ ++ N      +L +T T  A  EM  R+L  +   +H   + 
Sbjct: 19  ASAGSGKTFTLATEYMKRVIENPDAYRSILAVTFTNKATEEMKMRILSQLYGIAHGLPDS 78

Query: 97  LSAEITKIQGKKPNK--SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             + + KIQ   P        +A+  L  +L      +V+TI AF +++++    E ++T
Sbjct: 79  -DSYLHKIQESIPFPCVKIRERAQKALGQLLHNYNYFRVETIDAFFQSVLRNLARELDLT 137

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDI 211
           ++  I  E + K++ E+A    +  +    N++L +  YE +  + +D+    +I +I
Sbjct: 138 ANLRI--ELRDKQVKEKAVDELIEEL--QPNDKLLRWIYEYIRQNISDDKSWNVIGEI 191


>gi|268319977|ref|YP_003293633.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785]
 gi|262398352|emb|CAX67366.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785]
          Length = 748

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            SE   L      ++           V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV +++   +                                      
Sbjct: 61  TFTNKAATEMKERVQKLLGPAA-------------------------------------- 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++   +   +++F+IAD  +   LI+  +K  
Sbjct: 83  DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 130


>gi|255526474|ref|ZP_05393385.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296184847|ref|ZP_06853258.1| putative ATP-dependent DNA helicase PcrA [Clostridium
           carboxidivorans P7]
 gi|255509856|gb|EET86185.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296050629|gb|EFG90052.1| putative ATP-dependent DNA helicase PcrA [Clostridium
           carboxidivorans P7]
          Length = 754

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL      EQ   A        + A AGSGKT +L  R+  ++   N +PS +L +T T
Sbjct: 1   MDLKMLLNKEQYEAAVQVNGPLLILAGAGSGKTRVLTYRIAHMINDLNIYPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   +                                        +
Sbjct: 61  NKAAGEMKDRVRSLVGNEA--------------------------------------DNM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+ C  I+++   +     +FAI D    K LI++     
Sbjct: 83  WVSTFHSSCVRILRREIDKLGYNKNFAIYDTYDQKILIKQCMDEL 127


>gi|49474442|ref|YP_032484.1| DNA helicase II [Bartonella quintana str. Toulouse]
 gi|49239946|emb|CAF26350.1| DNA helicase II [Bartonella quintana str. Toulouse]
          Length = 776

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q    +      V A AG+GKT +L  R+  +L +  A P  +L +T T  AA EM
Sbjct: 48  NPEQQQAVINTEGPLLVLAGAGTGKTRVLTTRISHILRSGLASPKQILAVTFTNKAALEM 107

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E+I                                          G   + T H+
Sbjct: 108 KMRIGELIGEIVE-------------------------------------GMPWLGTFHS 130

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++     ++ ++F I D +   +L+++     + +  LD+     + F  +++ 
Sbjct: 131 TGAKILRRHAELVDLKTNFTILDNDDVIRLLKQ----LIQAEGLDDKRWPARCFAMMIDS 186

Query: 199 SNDEDI 204
             ++ +
Sbjct: 187 WKNQGL 192


>gi|282889815|ref|ZP_06298354.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500389|gb|EFB42669.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 677

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 40/176 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66
            +  E +D ++   S++   +       + A AGSGKT +L  R+  L+ +  A P ++L
Sbjct: 3   NDFKEELDALN--PSQRAAVTTTDGRVLILAGAGSGKTKVLTVRMAYLMSIKGASPKSIL 60

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T  AAAEM HR+                               ++K   L      
Sbjct: 61  GLTFTNKAAAEMRHRIGAF------------------------AAPHIAKQISL------ 90

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                   T H+FC  I++    +   T  F++ DE+  ++LI    +  L     
Sbjct: 91  -------CTFHSFCMQILRAEIHKLGYTPQFSLYDEKDVQRLIGLIARDVLEHEAE 139


>gi|310778912|ref|YP_003967245.1| ATP-dependent DNA helicase, Rep family [Ilyobacter polytropus DSM
           2926]
 gi|309748235|gb|ADO82897.1| ATP-dependent DNA helicase, Rep family [Ilyobacter polytropus DSM
           2926]
          Length = 725

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 39/163 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++  AS       + A AGSGKT  +  R+  ++      P  +L +T T  A
Sbjct: 4   LDNLNSEQKKAASKVEGPVLILAGAGSGKTRTVTYRIAHMVKEKEISPYKILAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  +I   S                                        + V 
Sbjct: 64  AREMRERVETLIGEDSK--------------------------------------RVMVS 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           T HAF   +++ + +E    S+F I D +  K+LI+   K  +
Sbjct: 86  TFHAFGVRLLRMYGVELGYNSNFNIYDGDDQKRLIKNIMKELV 128


>gi|302869847|ref|YP_003838484.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC
           27029]
 gi|302572706|gb|ADL48908.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC
           27029]
          Length = 803

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +  +D ++    ++   +       + A AGSGKT +L  R+  LL A + HP  ++ +T
Sbjct: 38  AALLDGLNG--PQRDAVTHAGSPLLIVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAIT 95

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++   + L                                     
Sbjct: 96  FTNKAAGEMKERVAALVGPRARL------------------------------------- 118

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I++     A + S F+I D + S++L++   +  
Sbjct: 119 -MWVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQMVAREL 164


>gi|188588674|ref|YP_001919827.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498955|gb|ACD52091.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 749

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++L S    EQ   A        + A AGSGKT +L  R+  ++      P  +L +T T
Sbjct: 1   MELKSLLNKEQYEGAITIDGQLLILAGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV+ +I + +                                        +
Sbjct: 61  NKAAKEMKDRVISLIGSKAE--------------------------------------NM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + T H+ C  I+++   +   TS+F I D    K LI+E  K
Sbjct: 83  WISTFHSTCVRILRREIDKIGYTSNFTIYDTSDQKVLIKECMK 125


>gi|110680547|ref|YP_683554.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114]
 gi|109456663|gb|ABG32868.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114]
          Length = 810

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + E +   D      + A AG+GKT  L  R++ LL    A P+ +L +T T
Sbjct: 27  YLDGLNPAQREAVEQLD--GPVLMLAGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM +RV E++                                          G  
Sbjct: 85  NKAAREMKNRVGEMLGQPIE-------------------------------------GMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  ++++      + S+F I D +   +L+++     +++  +D+     + 
Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LVSAEGIDDKRWPARQ 163

Query: 192 FYEILEISNDEDI 204
              I++   +   
Sbjct: 164 LASIIDGWKNSAF 176


>gi|289423398|ref|ZP_06425202.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
           653-L]
 gi|289156156|gb|EFD04817.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
           653-L]
          Length = 786

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 64/208 (30%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D ++  + + +  ++      + A AGSGKT +L  R+  L+   N +PS +L +T T 
Sbjct: 3   LDGLNPAQRQAVERTE--GPVLILAGAGSGKTKVLTTRISYLVEDKNINPSNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  II   S                                        + 
Sbjct: 61  KAANEMRERVESIIGEESR--------------------------------------DMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I+++   +      F I D      LI+E  K+                 
Sbjct: 83  ISTFHSCCVRILRKDINKIGYNRSFVIYDSTDQLTLIKECIKAL---------------- 126

Query: 193 YEILEISNDEDIE--TLISDIISNRTAL 218
                  ND+  E   LI++I S +  L
Sbjct: 127 -----DLNDKKFEPRALIAEISSAKDKL 149


>gi|154509660|ref|ZP_02045302.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799294|gb|EDN81714.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC
           17982]
          Length = 900

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++   +       + A AGSGKT +L  R+  LL    A    +L +T T  AAAEM
Sbjct: 90  NDRQREAVTHAGSPLLILAGAGSGKTRVLTHRIAYLLARGRARAGEILAITFTNKAAAEM 149

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R   ++   +                                        + V T H+
Sbjct: 150 RERAGALVGDDAR--------------------------------------RMWVSTFHS 171

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  +++     A ++S F I D + S++LI+   K+ 
Sbjct: 172 ACVRLLRYEHEAAGLSSSFTIYDAQDSQRLIQMVLKAM 209


>gi|30260477|ref|NP_842854.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames]
 gi|47525567|ref|YP_016916.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|254739087|ref|ZP_05196789.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254761884|ref|ZP_05213733.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Australia
           94]
 gi|30253845|gb|AAP24340.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames]
 gi|47500715|gb|AAT29391.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 747

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  LL      P  +L +T T  A
Sbjct: 8   LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++   +                                        + + 
Sbjct: 68  AREMRERIDTLVGPEAE--------------------------------------DIWIS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  TFHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKE 130


>gi|282898588|ref|ZP_06306576.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196456|gb|EFA71365.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii
           CS-505]
          Length = 777

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 23/184 (12%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-A 60
           ++ N+  + +  ++      S+++          V A AGSGKT  L  R+  L+L N  
Sbjct: 1   MHINTNNDFTSQLNF-----SQRIAVEHYCGPLLVVAGAGSGKTRALTYRIANLILQNRV 55

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           HP  +L +T T  AA EM  R+  +      ++            G+K +     +   +
Sbjct: 56  HPENILAVTFTNKAAREMKDRIQRLFADQFAINQY----------GQKLDLLPAQQQNEV 105

Query: 121 LITILETP-GGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAK 173
           + ++  T    +   T H+    I++    ++  E       +F+I DE   + LI+E  
Sbjct: 106 ISSVYRTYIKNIWCGTFHSLFSRILRFDVEKYQDEKGRHWQKNFSIFDESDVQTLIKEIV 165

Query: 174 KSTL 177
              L
Sbjct: 166 TKQL 169


>gi|170739391|ref|YP_001768046.1| UvrD/REP helicase [Methylobacterium sp. 4-46]
 gi|168193665|gb|ACA15612.1| UvrD/REP helicase [Methylobacterium sp. 4-46]
          Length = 789

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  +D ++  +   + A++      V A AG+GKT +L  R+  L+    A P  +L +T
Sbjct: 29  AAYLDGLNPEQRRAVEATE--GPVLVLAGAGTGKTRVLTTRIAHLIAIGRARPFDILAVT 86

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  +I A                                        G
Sbjct: 87  FTNKAAREMKERIGGLIGAAGE-------------------------------------G 109

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T HA    I+++      + S F I   +   +L+++     + +  +D      
Sbjct: 110 MPWLGTFHAIGTKILRRHAELVGLRSDFTILGTDDQLRLLKQ----VIEAAGIDEKRWPA 165

Query: 190 KAFYEILEISNDEDI 204
           +   + ++   +  +
Sbjct: 166 RGLAQAIDGWKNRGL 180


>gi|163868698|ref|YP_001609910.1| DNA helicase II [Bartonella tribocorum CIP 105476]
 gi|161018357|emb|CAK01915.1| DNA helicase II [Bartonella tribocorum CIP 105476]
          Length = 787

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 43/199 (21%)

Query: 8   QEHSETIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           ++ S   D + Q    +Q    +      V A AG+GKT +L  R+  +L +  A P  +
Sbjct: 42  EKKSYNTDYLGQLNPEQQQAVINTEGPLLVLAGAGTGKTRVLTTRISHILRSGLASPQQI 101

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  R+ E+I                                       
Sbjct: 102 LAVTFTNKAAREMKIRIGELIGEVVE---------------------------------- 127

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
              G   + T H+    I+++     ++  +F I D +   +L+++     + +  LD+ 
Sbjct: 128 ---GMPWLGTFHSTGAKILRRHAELVDLKRNFTILDSDDVLRLLKQ----LIQAAGLDDK 180

Query: 186 EELKKAFYEILEISNDEDI 204
               +    +++   ++  
Sbjct: 181 RWPARNLAMMIDSWKNQGF 199


>gi|251778648|ref|ZP_04821568.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082963|gb|EES48853.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 749

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++L S    EQ   A        + A AGSGKT +L  R+  ++      P  +L +T T
Sbjct: 1   MELKSLLNKEQYEGAITIDGQLLILAGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV+ +I + +                                        +
Sbjct: 61  NKAAKEMKDRVISLIGSKAE--------------------------------------NM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + T H+ C  I+++   +   TS+F I D    K LI+E  K
Sbjct: 83  WISTFHSTCVRILRREIDKIGYTSNFTIYDTSDQKVLIKECMK 125


>gi|237820788|ref|ZP_04596633.1| recombination helicase AddA [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1216

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K++F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
                  E  +          K+  F  S    +K + +S  
Sbjct: 187 FVGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|227501454|ref|ZP_03931503.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227077479|gb|EEI15442.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 795

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 41/159 (25%)

Query: 21  KSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
             +QL A +   R   + A AGSGKT +L +R+  L+     +P   L +T T  AAAEM
Sbjct: 2   NPQQLEAVTHTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWESLAITFTNKAAAEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 62  KERVGSLVGPVAE--------------------------------------RMWVSTFHS 83

Query: 139 FCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
            C  I++Q       + ++F I D + +++L+    K  
Sbjct: 84  ICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDM 122


>gi|325066848|ref|ZP_08125521.1| ATP-dependent DNA helicase PcrA [Actinomyces oris K20]
          Length = 649

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             +++   +       + A AGSGKT +L  R+  L+    A P  +L +T T  AAAEM
Sbjct: 3   NPAQESAVTHAGAPLLIIAGAGSGKTRVLTHRIAHLIATGRARPGEILAITFTNKAAAEM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                            + V T H+
Sbjct: 63  RERVTALVGPAGE--------------------------------------RMWVSTFHS 84

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++    A + S F+I D   S +LI    +  
Sbjct: 85  ACVRILRREHEAAGLRSTFSIYDAADSTRLITLIVREL 122


>gi|315501309|ref|YP_004080196.1| ATP-dependent DNA helicase pcra [Micromonospora sp. L5]
 gi|315407928|gb|ADU06045.1| ATP-dependent DNA helicase PcrA [Micromonospora sp. L5]
          Length = 803

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +  +D ++    ++   +       + A AGSGKT +L  R+  LL A + HP  ++ +T
Sbjct: 38  AALLDGLNG--PQRDAVTHAGSPLLIVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAIT 95

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++   + L                                     
Sbjct: 96  FTNKAAGEMKERVAALVGPRARL------------------------------------- 118

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I++     A + S F+I D + S++L++   +  
Sbjct: 119 -MWVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQMVAREL 164


>gi|121601965|ref|YP_989213.1| putative DNA helicase II [Bartonella bacilliformis KC583]
 gi|120614142|gb|ABM44743.1| putative DNA helicase II [Bartonella bacilliformis KC583]
          Length = 816

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 44/198 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q  S+ +  ++    +Q    +      V A AG+GKT +L  R+  +L    A+P  +L
Sbjct: 37  QYESDYLKKLN--PEQQQAVINTEGPILVLAGAGTGKTRVLTTRIAHILHLGLAYPRQIL 94

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+ E++                                        
Sbjct: 95  AVTFTNKAANEMKIRIGELVGKTVE----------------------------------- 119

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    I+++     ++ S+F I D +   +L+++     + +  LD+  
Sbjct: 120 --GMPWLGTFHSTGVKILRRHAELVDLKSNFTILDNDDVLRLLKQ----LIQAENLDDKR 173

Query: 187 ELKKAFYEILEISNDEDI 204
              ++   +++   ++ +
Sbjct: 174 WPARSLAMMIDSWKNQGL 191


>gi|299146105|ref|ZP_07039173.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23]
 gi|298516596|gb|EFI40477.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23]
          Length = 792

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71
           + I +    Q  A       + V A AGSGKT +L  ++  LL      +P  +L LT T
Sbjct: 4   NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                           M +AR+L           
Sbjct: 64  NKAAREMKERIARQVG--------------------------MERARYL----------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++        TS F I D   SK L+    K  
Sbjct: 87  WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131


>gi|319408809|emb|CBI82466.1| DNA helicase II [Bartonella schoenbuchensis R1]
          Length = 805

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++    +      V A AG+GKT +L  R+  +L    AHP  +L +T T  AA EM
Sbjct: 48  NPEQREAVINTEGPLLVLAGAGTGKTRVLTTRIFHILHLGLAHPKQILAITFTNKAAREM 107

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E++                                          G   + T H+
Sbjct: 108 KTRIAELVGEAIE-------------------------------------GMPWLGTFHS 130

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++     ++ S+F I D +   +L+++     + +  LD+     ++   +++ 
Sbjct: 131 IGAKILRRHAELIDLKSNFTILDTDDVVRLLKQ----LIQAAGLDDKRWSARSLATMIDA 186

Query: 199 SNDEDI 204
             ++ +
Sbjct: 187 WKNQGL 192


>gi|307748346|gb|ADN91616.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 921

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 7/178 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDVKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADEE-QSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           +S F +++E    +++     +  +    +  ++  +E +  F E+ +   +   + L
Sbjct: 125 SSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182


>gi|260592441|ref|ZP_05857899.1| ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260535487|gb|EEX18104.1| ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 843

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 37/161 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L +   S++      T  + V A AGSGKT +L  ++  LL     P  +L LT T  AA
Sbjct: 11  LATLNTSQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLSRGLKPWNILALTFTNKAA 70

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ ++ +                          +  AR L +            T
Sbjct: 71  REMKERIAQVTS--------------------------LRDARQLYM-----------GT 93

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+    I+++         +F I DE  S+ L++   K+ 
Sbjct: 94  FHSIFARILRREGEVIGFNGNFTIYDEADSRSLLKNIIKAL 134


>gi|313674951|ref|YP_004052947.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126]
 gi|312941649|gb|ADR20839.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126]
          Length = 754

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +D +S     Q     +      + A AGSGKT +L  R+  L+ + N  P ++L LT T
Sbjct: 1   MDYLSHLNPPQREGVENLEGPTMIIAGAGSGKTRVLTYRIAHLITVKNVDPFSILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +I+   +                                        L
Sbjct: 61  NKAAKEMRERIEKIVGTDAR--------------------------------------NL 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++    +    S+F I D E SK LI    +  
Sbjct: 83  WMGTFHSVFARILRAEADKLGYPSNFTIYDTEDSKSLIRAIVREM 127


>gi|223986797|ref|ZP_03636779.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM
           12042]
 gi|223961230|gb|EEF65760.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM
           12042]
          Length = 721

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 70/165 (42%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +I+++++ + + +L S  ++   + A AGSGKT +L  R+  L+   +  P+ +L +T T
Sbjct: 3   SIEMLNENQKKAVLTS--SQYVRIIAGAGSGKTRVLTMRIAHLIEQCHVWPNKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                                       E    +
Sbjct: 61  NKAANEMKERIRQMLP--------------------------------------EQGNAV 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + TIH+ C  I+++      +  +F + D +  + +++EA K  
Sbjct: 83  FISTIHSLCVRILREDIPAMGMPRNFTVMDADDQRSILKEAYKEF 127


>gi|52079148|ref|YP_077939.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52784515|ref|YP_090344.1| PcrA [Bacillus licheniformis ATCC 14580]
 gi|52002359|gb|AAU22301.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52347017|gb|AAU39651.1| PcrA [Bacillus licheniformis ATCC 14580]
          Length = 739

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            K +Q           + A AGSGKT +L  R+  L+      P  +L +T T  AA EM
Sbjct: 13  NKMQQEAVKTTDGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  I+   +                                        + + T H+
Sbjct: 73  KERVESILGPGA--------------------------------------DDIWISTFHS 94

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C  I+++      I  +F+I D      +I+   K 
Sbjct: 95  MCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKE 131


>gi|150388771|ref|YP_001318820.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF]
 gi|149948633|gb|ABR47161.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF]
          Length = 724

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 43/190 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ++L      ++           + A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 1   MNLTHLNDEQRKAVEHTKGPLLLLAGAGSGKTRVLTHRIAYLVEELGVSPYHILSITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++                                       +    L 
Sbjct: 61  KAAREMKERIHQLLG--------------------------------------DGFRDLW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I++    +   + +F I D    + +I+E     L  + LD+     +A 
Sbjct: 83  VSTFHSSCVRILRSEIDKLGYSKNFVIYDTTDQQIVIKEC----LKKLNLDDKMYQPRAV 138

Query: 193 YEILEISNDE 202
              +  + D+
Sbjct: 139 LAEIGKAKDQ 148


>gi|319784375|ref|YP_004143851.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170263|gb|ADV13801.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 697

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 31/162 (19%)

Query: 17  ISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           ++  + + +   A        V A AGSGKT+ L  RV  L++  A P  +L +T ++ A
Sbjct: 23  LNDAQRQAVEHGAGQIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRA 82

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM+ RV  I          +++  +T                                
Sbjct: 83  ASEMARRVERIAGEVLGRDAAVITDALT-----------------------------WAG 113

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H     +++ + LE  +   F I D E S  L+   +   
Sbjct: 114 TFHGIGARLLRDYALEIGLDPAFTIHDREDSADLMNLVRHEL 155


>gi|315166930|gb|EFU10947.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1341]
          Length = 791

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|315172193|gb|EFU16210.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1346]
          Length = 791

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|157415705|ref|YP_001482961.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|157386669|gb|ABV52984.1| putative helicase [Campylobacter jejuni subsp. jejuni 81116]
          Length = 921

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 7/178 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDVKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADEE-QSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           +S F +++E    +++     +  +    +  ++  +E +  F E+ +   +   + L
Sbjct: 125 SSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182


>gi|110637958|ref|YP_678165.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406]
 gi|110280639|gb|ABG58825.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406]
          Length = 749

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 88/234 (37%), Gaps = 49/234 (20%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D ++  + + +  +D      + A AGSGKT +L  R+  L+     P  +L LT T 
Sbjct: 3   YLDSLNDVQRQAVEQTD--GPVMIIAGAGSGKTRVLTYRIAHLIQKGVEPFNILSLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HR+  +                             S+AR++++          
Sbjct: 61  KAAKEMQHRIQAVCG---------------------------SEARNVMM---------- 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H+    I++    +    S+F I D E SK L+    ++ L    LD+        
Sbjct: 84  -GTFHSVFSRILRVESQKIGFPSNFTIYDTEDSKSLL----RTILKEQNLDDKVYKPNTV 138

Query: 193 YEILEISNDE--DIETLISD---IISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +  +  + +     +  I++   +  +R AL+        +++ ++I       
Sbjct: 139 FNRISAAKNRLISYKEYIANPNYMADDRAALRPEMGKLYQMYQERLIRAGAMDF 192


>gi|160884387|ref|ZP_02065390.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483]
 gi|156110126|gb|EDO11871.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483]
          Length = 792

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71
           + I +    Q  A       + V A AGSGKT +L  ++  LL      +P  +L LT T
Sbjct: 4   NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                           M +AR+L           
Sbjct: 64  NKAAREMKERIARQVG--------------------------MERARYL----------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++        TS F I D   SK L+    K  
Sbjct: 87  WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131


>gi|293373822|ref|ZP_06620166.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f]
 gi|298481100|ref|ZP_06999294.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22]
 gi|292631221|gb|EFF49855.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f]
 gi|298272674|gb|EFI14241.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22]
          Length = 792

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71
           + I +    Q  A       + V A AGSGKT +L  ++  LL      +P  +L LT T
Sbjct: 4   NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                           M +AR+L           
Sbjct: 64  NKAAREMKERIARQVG--------------------------MERARYL----------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++        TS F I D   SK L+    K  
Sbjct: 87  WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131


>gi|300766625|ref|ZP_07076542.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495725|gb|EFK30876.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 759

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 47/199 (23%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63
           NS  + S    +      +Q    D      + A AGSGKT +L  RV  L+     +P 
Sbjct: 3   NSVSKESLLAGM---NDKQQEAVLDTEGPLLIMAGAGSGKTRVLTHRVAYLIEEQGVNPW 59

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  RV +++                                     
Sbjct: 60  NVLAITFTNKAAREMRERVGKLLG------------------------------------ 83

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             E+   + V T HA C  I+++   +      F IA   + + L     K  L    +D
Sbjct: 84  --ESAQEVWVSTFHALCVRILRRDIEQIGYNRAFTIAGTSEQRTL----VKRILTEQNID 137

Query: 184 NNE-ELKKAFYEILEISND 201
           + + + +     I    ND
Sbjct: 138 SKKFDPRSILSAISNAKND 156


>gi|54026969|ref|YP_121211.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
 gi|54018477|dbj|BAD59847.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
          Length = 842

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 42/171 (24%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           ++    +D ++    ++           + A AGSGKT +L +R+  LL A +  P  +L
Sbjct: 45  EQVERLLDGLN--PQQRAAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQIL 102

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AAAEM  RV  ++   +                                    
Sbjct: 103 AITFTNKAAAEMRERVTGLVGPRA------------------------------------ 126

Query: 127 TPGGLKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + V T H+ C  I++ Q  L   + S+F+I D + S++L+    +  
Sbjct: 127 --ATMWVSTFHSSCVRILRMQAALLPGLNSNFSIYDADDSRRLLTMISRDL 175


>gi|328955224|ref|YP_004372557.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
 gi|328455548|gb|AEB06742.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
          Length = 1215

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 37/192 (19%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68
           +DL    + ++ +        +VSA AGSGKT  L +R+L  L   + P       +L +
Sbjct: 1   MDLAGLMERQREIVRALDCPLFVSAGAGSGKTFTLTRRILWALSERSGPYLDSLDQVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AA E+  RV   +      ++ +                                
Sbjct: 61  TFTRDAAQEIRERVRAALIEEGMRTEAL------------------------------AI 90

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + TIH  C  +++   LE  I   F+I  +    +L++ A +  L    L +   +
Sbjct: 91  DDAWISTIHGMCARMLRAHALELGIDPEFSILQDTD--ELMDAAVEHVLVRAELASKRAV 148

Query: 189 KKAFYEILEISN 200
           +       +   
Sbjct: 149 QADSQAAADTEG 160


>gi|325972020|ref|YP_004248211.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324027258|gb|ADY14017.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 754

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
            ++ + ++     +Q  A  +  R   V A AGSGKT ++  ++   +         +L 
Sbjct: 1   MADIVSMLEALNEQQREAVLENERPLLVLAGAGSGKTRVITTKIAYAVEKLGIPAYKILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA+EM  RV  ++   S + D                                 
Sbjct: 61  VTFTNKAASEMKERVGVMLDGNSQVED--------------------------------- 87

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                ++T H+F   ++++F  E  + S+F I D++ S  L        LAS   +  + 
Sbjct: 88  ---CTIRTFHSFGAWLLRRFGSEIGLASNFTIYDDDDSLSL--------LASCFPNYKKR 136

Query: 188 LKKAFYEILEISNDEDIE 205
                   +  + D  + 
Sbjct: 137 ELDPVMRKISYAKDRALR 154


>gi|168186071|ref|ZP_02620706.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str.
           Eklund]
 gi|169296014|gb|EDS78147.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str.
           Eklund]
          Length = 760

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69
            E  +L+++ + E   A +      V A AGSGKT +L  R+  ++     P   +L +T
Sbjct: 1   MELKELLNKEQYEAATAIE--GPVLVLAGAGSGKTRVLTYRIAHMIEDLEIPQYNILAIT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ ++++                                      E   
Sbjct: 59  FTNKAAGEMKDRIKKLVS--------------------------------------ENID 80

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++   +     +FAI D    K L+++  K  
Sbjct: 81  SMWVSTFHSCCVRILRREIDKLGYNKNFAIYDSSDQKNLVKQCMKEL 127


>gi|265753474|ref|ZP_06088829.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235188|gb|EEZ20712.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 796

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 56/163 (34%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + + +    Q  A       + V A AGSGKT +L  ++  LL     P ++L LT T  
Sbjct: 3   NYLEELNESQRDAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R++  +                                       +    L +
Sbjct: 63  AAREMKERIVRQVG--------------------------------------DQARYLWM 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        +S+F I D   SK LI+   K  
Sbjct: 85  GTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKSLIKSIVKEM 127


>gi|327402801|ref|YP_004343639.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
 gi|327318309|gb|AEA42801.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
          Length = 771

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 39/166 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
              +D +++  S+++   +      V A AGSGKT +L  R+  ++     P  +L LT 
Sbjct: 1   MNYLDGLNE--SQRVAVENFEGPTMVIAGAGSGKTRVLTMRIAFMIDRGVDPFNILALTF 58

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM+ R+  II +    +                                     
Sbjct: 59  TNKAAKEMTERIGSIIGSSEAKN------------------------------------- 81

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + + T H+    I++          +F I D + +K L+++  K  
Sbjct: 82  ITMGTFHSVFSRILRINADRLGYPQNFTIYDTQDTKSLLKDIIKEL 127


>gi|325977976|ref|YP_004287692.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177904|emb|CBZ47948.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 1168

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 27/206 (13%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            VSA+AGSGKT ++V+R++  +L       L   T T  AA E+  R+ + I+       
Sbjct: 1   MVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKIS------- 53

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                       +   ++  +  ++ L   L       + T+ AF + ++ Q+     I+
Sbjct: 54  ------------QALQETTDNDLKNYLNEQLLGLQTADIGTMDAFTQKLVNQYGYTLGIS 101

Query: 155 SHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
             F I  D+ +   L  E      +  M  N+ EL +        S +    T    I+ 
Sbjct: 102 PTFRIMTDKSEQDILKNEVFFDLFSDYMTGNDAELFRQLVR--NFSGNRKDSTAFRGIV- 158

Query: 214 NRTALKLIFFFFSYLWRRKIIEKSLW 239
                K+  F  +    +K + +   
Sbjct: 159 ----YKIYDFSQATDNPQKWLAEVFL 180


>gi|325570044|ref|ZP_08145969.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156872|gb|EGC69043.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC
           12755]
          Length = 785

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           SE +  ++  + E ++         + A AGSGKT +L  R+  L+   N +P  +L +T
Sbjct: 43  SELLKRMNPRQKEAVM--HTEGPLLLMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAIT 100

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++ +                                         
Sbjct: 101 FTNKAAREMKERVSQLLGSGGE-------------------------------------- 122

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T H+ C  I+++       + +F I D  +   L++   K  
Sbjct: 123 DVWVSTFHSMCVRILRRDVDRIGYSKNFTIIDSSEQNTLMKRVLKEL 169


>gi|295397183|ref|ZP_06807286.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563]
 gi|294974572|gb|EFG50296.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563]
          Length = 856

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L  R+  +L   + +P  +L +T T  AA EM
Sbjct: 26  NDRQKEAVEHTEGPLLIMAGAGSGKTRVLTHRMAYILSEKDVNPWNILAITFTNKAAKEM 85

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T HA
Sbjct: 86  KERVSALVGPDA--------------------------------------NDMWVSTFHA 107

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++       T  F IAD  + + LI+   K  
Sbjct: 108 MCVRILRREAEAIGFTRSFTIADPSEQQTLIKRIIKEL 145


>gi|229817712|ref|ZP_04447994.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
           20098]
 gi|229785501|gb|EEP21615.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
           20098]
          Length = 889

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A      +  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 33  ELVGDLNKQQSEAVQYRGAALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 92

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 93  KAAAEMRERLTALIGPVAQ--------------------------------------RMW 114

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 115 VSTFHSACVRILRRDGKALGLKSGFSIYDSADSERLVK 152


>gi|169833925|ref|YP_001694551.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6]
 gi|251764563|sp|B1IBR6|ADDA_STRPI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|168996427|gb|ACA37039.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6]
          Length = 1216

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAANELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K +  S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSDSFL 223


>gi|108803668|ref|YP_643605.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941]
 gi|108764911|gb|ABG03793.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941]
          Length = 694

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 48/149 (32%), Gaps = 39/149 (26%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
                  V A AGSGKT +L  R+  LL    A P  +L +T T  AA EM  RV  ++ 
Sbjct: 3   HTEGPLLVLAGAGSGKTRVLTHRIAYLLERGLAAPDEVLAITFTNKAADEMKERVALLVG 62

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             +                                        + V T H+FC  +++  
Sbjct: 63  QEAR--------------------------------------RMWVSTFHSFCARLLRAH 84

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKST 176
                    F I D+    +L++      
Sbjct: 85  AERLGYRRGFTIYDQGDGVRLVKRCIVEL 113


>gi|121999202|ref|YP_001003989.1| UvrD/REP helicase [Halorhodospira halophila SL1]
 gi|121590607|gb|ABM63187.1| ATP-dependent DNA helicase UvrD [Halorhodospira halophila SL1]
          Length = 725

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
             +++     P   A V A AGSGKT +L +R   L+ +  A P  +L +T T  AA EM
Sbjct: 11  NDAQREAVCLPPGRALVLAGAGSGKTRVLTRRAAYLVQVEGASPFAILAVTFTNKAAGEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E++   +                                       G+ V T H 
Sbjct: 71  RGRIGELLGIAT--------------------------------------AGMWVGTFHG 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               +++Q    A +   F I D +   ++++   ++
Sbjct: 93  IAHRLLRQHAQRAGLPEGFQILDADDQLRVVKRVLRA 129


>gi|315146962|gb|EFT90978.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4244]
          Length = 791

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|254455522|ref|ZP_05068951.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082524|gb|EDZ59950.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211]
          Length = 678

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 40/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCL 68
           +S+ +D ++  + E +L  D      + A AGSGKT +L  R+  ++      P+ +L +
Sbjct: 3   NSDYLDNLNNAQKEAVLHVD--GPLLIVAGAGSGKTKVLTSRIAHIIKKKKAFPNQILSV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV +I+ + +                                      
Sbjct: 61  TFTNKAAKEMQTRVSKILGSTAT------------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G   + T H+ C  I+++    AN+ S+F I D +   +LI+   KS
Sbjct: 84  GLSWLGTFHSICVKILRKHAKAANLNSNFTIIDTDDQIRLIKNICKS 130


>gi|149006188|ref|ZP_01829900.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74]
 gi|307127336|ref|YP_003879367.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B]
 gi|147761965|gb|EDK68927.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74]
 gi|306484398|gb|ADM91267.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B]
 gi|332075086|gb|EGI85557.1| recombination helicase AddA [Streptococcus pneumoniae GA17545]
          Length = 1216

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|302346510|ref|YP_003814808.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica
           ATCC 25845]
 gi|302150595|gb|ADK96856.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica
           ATCC 25845]
          Length = 851

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 38/161 (23%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S     Q  A +  T  + V A AGSGKT +L  ++  LL     P  +L LT T  AA
Sbjct: 11  LSALNESQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLKPWNILALTFTNKAA 70

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ +I TA                            A+HL +            T
Sbjct: 71  REMKERIAQITTA--------------------------KDAQHLYM-----------GT 93

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+    I+++        S+F I DE  S+ LI+   K+ 
Sbjct: 94  FHSIFARILRREGEAIGFGSNFTIYDENDSRSLIKSIVKAL 134


>gi|283768593|ref|ZP_06341505.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa
           W1219]
 gi|283104985|gb|EFC06357.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa
           W1219]
          Length = 1039

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 24/179 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78
           T  +QL   +   +  VSA+AG+GKT++L++R+  R++  +     +L +T TKAAA+EM
Sbjct: 2   TDPQQLAIQERNTNVLVSASAGAGKTYLLIERLAQRIVQDHISLDQILAVTFTKAAASEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +        +                      RH +   L      ++ TI +
Sbjct: 62  KTRLAMKLNRLRQTEIQE---------------------RHWIDQQLAILSKAEISTIDS 100

Query: 139 FCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           FC  +++Q+     +            Q K+L   A ++ L+     N ++  K     
Sbjct: 101 FCLNLIKQYYSMIGLNPTRLHQTLSNGQEKELKHLAFETALSHFYQQNPKKALKLSNHF 159


>gi|116511959|ref|YP_809175.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107613|gb|ABJ72753.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 758

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 47/234 (20%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +  +++ +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLQGMNEKQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                                   A  L     +T 
Sbjct: 59  TFTNKAAKEMRER-----------------------------------ALALTPRAQDTL 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-E 187
               + T H+ C  I+++         +F I D    K L+    K  L    LD  + E
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM----KRILKEANLDPKKWE 135

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            K     I    ND   ET     I+ R   +++      ++++++ +      
Sbjct: 136 PKGLLNTISNAKNDLLDETAYEAQITARHPYEMVVARVYKIYQKELRKAESMDF 189


>gi|149197452|ref|ZP_01874503.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
 gi|149139470|gb|EDM27872.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
          Length = 674

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 42/191 (21%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            S  +D ++    ++   +   +   + A AG+GKT ++  R+  ++ +  A P  +L +
Sbjct: 1   MSVLLDRLND--EQRQAVTTTEKPLLILAGAGTGKTMVVTSRIAFIVQSGRAEPGEILAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +I   +                                      
Sbjct: 59  TFTNKAANEMKERAGRLIGQKAVKD----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             L V T H+F   I++++  +A     F +A+      LI++        ++ D   + 
Sbjct: 84  --LWVSTFHSFGMKILRKYAYQAGYAPDFTLAEYGDQVGLIKQGLNEL--GLVEDGMSQD 139

Query: 189 KKAFYEILEIS 199
            KA   ++ ++
Sbjct: 140 PKAILSLISMA 150


>gi|121612796|ref|YP_001001130.1| putative recombination protein RecB [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006023|ref|ZP_02271781.1| ATP-dependent DNA helicase, UvrD/REP family protein [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249602|gb|EAQ72561.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 921

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADEE 163
           +S F +++E 
Sbjct: 125 SSDFTMSEER 134


>gi|330685592|gb|EGG97238.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU121]
          Length = 730

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+    +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LVKNMNAEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAKEMKARVEQLVGEEAQV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|327534311|gb|AEA93145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis OG1RF]
          Length = 791

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|312900317|ref|ZP_07759628.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470]
 gi|311292505|gb|EFQ71061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470]
 gi|315170713|gb|EFU14730.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1342]
          Length = 791

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|254521548|ref|ZP_05133603.1| DNA helicase II [Stenotrophomonas sp. SKA14]
 gi|219719139|gb|EED37664.1| DNA helicase II [Stenotrophomonas sp. SKA14]
          Length = 730

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L  R+  L  +       +  
Sbjct: 2   DVSHLLDGLNPAQREAVSA--PPGHHLVLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR+   +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRIDAQLPNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++    +A +   F + D +   +L     K  + ++ LD+ + 
Sbjct: 84  --GMWIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQLRL----VKRVVQALELDDGKY 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    DE 
Sbjct: 138 PAKQIAWWINAQKDEG 153


>gi|259502570|ref|ZP_05745472.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041]
 gi|259169460|gb|EEW53955.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041]
          Length = 752

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +            V A AGSGKT +L  RV  L+      P  +L +T T  AA EM
Sbjct: 2   NDKQAEAVLTTEGPLLVMAGAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   +                                        + V T H+
Sbjct: 62  QERVGKLLGEGAQ--------------------------------------DIWVSTFHS 83

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +      F IAD  + + L+++     
Sbjct: 84  LCVRILRRDIEKLGYNRAFTIADTSEQRTLMKQVCAEL 121


>gi|53690303|ref|ZP_00346176.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium
           longum DJO10A]
          Length = 454

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A     ++  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 96  VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133


>gi|315058935|gb|ADT73264.1| Helicase [Campylobacter jejuni subsp. jejuni S3]
          Length = 921

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADEE 163
           +S F +++E 
Sbjct: 125 SSDFTMSEER 134


>gi|307284517|ref|ZP_07564679.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860]
 gi|306503194|gb|EFM72448.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860]
          Length = 791

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|223934306|ref|ZP_03626227.1| UvrD/REP helicase [bacterium Ellin514]
 gi|223896769|gb|EEF63209.1| UvrD/REP helicase [bacterium Ellin514]
          Length = 689

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 34/194 (17%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++L +    +++ A        + A AG+GKT ++  R+  ++     P ++L +T T 
Sbjct: 1   MLNLSTLNPQQRMAAETIRGPVLILAGAGTGKTRVITFRIAHMIERGVAPGSILAVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV ++I   S  S +                              E P    
Sbjct: 61  KAAREMQERVNKLIPRPSKKSRD------------------------------EKPERPT 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I++Q   +     +F I D+ +       A K  L+ +     +    A 
Sbjct: 91  LCTFHSLCVRILRQHIEKLGYKKNFVIYDQTEQLG----AIKKILSQVSAKGEKTDPAAI 146

Query: 193 YEILEISNDEDIET 206
             +L    +   + 
Sbjct: 147 LAMLSKYKNGGSQA 160


>gi|260174597|ref|ZP_05761009.1| ATP-dependent DNA helicase [Bacteroides sp. D2]
 gi|315922861|ref|ZP_07919101.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696736|gb|EFS33571.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 792

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71
           + I +    Q  A       + V A AGSGKT +L  ++  LL      +P  +L LT T
Sbjct: 4   NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                           M +AR+L           
Sbjct: 64  NKAAREMKERIARQVG--------------------------MERARYL----------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++        TS F I D   SK L+    K  
Sbjct: 87  WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131


>gi|227517687|ref|ZP_03947736.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104]
 gi|229546558|ref|ZP_04435283.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322]
 gi|293385045|ref|ZP_06630879.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712]
 gi|293389316|ref|ZP_06633777.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613]
 gi|307272535|ref|ZP_07553788.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855]
 gi|307274690|ref|ZP_07555862.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134]
 gi|307296389|ref|ZP_07576213.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411]
 gi|312904260|ref|ZP_07763422.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635]
 gi|312906034|ref|ZP_07765047.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512]
 gi|312909380|ref|ZP_07768236.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516]
 gi|227074842|gb|EEI12805.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104]
 gi|229308303|gb|EEN74290.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322]
 gi|291077723|gb|EFE15087.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712]
 gi|291081338|gb|EFE18301.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613]
 gi|306496044|gb|EFM65629.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411]
 gi|306508619|gb|EFM77717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134]
 gi|306510820|gb|EFM79837.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855]
 gi|310628029|gb|EFQ11312.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512]
 gi|310632356|gb|EFQ15639.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635]
 gi|311290404|gb|EFQ68960.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516]
 gi|315025780|gb|EFT37712.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2137]
 gi|315029104|gb|EFT41036.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4000]
 gi|315031452|gb|EFT43384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0017]
 gi|315145224|gb|EFT89240.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2141]
 gi|315151577|gb|EFT95593.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0012]
 gi|315157733|gb|EFU01750.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0312]
 gi|315161923|gb|EFU05940.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0645]
 gi|315575349|gb|EFU87540.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309B]
 gi|315578806|gb|EFU90997.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0630]
 gi|315581379|gb|EFU93570.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309A]
          Length = 791

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|212692987|ref|ZP_03301115.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855]
 gi|237725615|ref|ZP_04556096.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212664456|gb|EEB25028.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855]
 gi|229436302|gb|EEO46379.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 796

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + + +    Q  A       + V A AGSGKT +L  ++  LL     P ++L LT T  
Sbjct: 3   NYLEELNESQRDAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                                       +    L +
Sbjct: 63  AAREMKERIARQVG--------------------------------------DQARYLWM 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        +S+F I D   SK LI+   K  
Sbjct: 85  GTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKSLIKSIVKEM 127


>gi|241205526|ref|YP_002976622.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859416|gb|ACS57083.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 826

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ  A +    S  V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 54  DYLAGLNPEQTEAVETLEGSVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 113

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 114 KAAREMKERIALLVGGAVE-------------------------------------GMPW 136

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++      + S F I D +   +LI++     + +  LD+     K F
Sbjct: 137 LGTFHSIGVKLLRRHGELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 192

Query: 193 YEILEISNDEDI 204
             +++   ++ +
Sbjct: 193 AGMVDTWKNKGL 204


>gi|296118283|ref|ZP_06836864.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968841|gb|EFG82085.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM
           20306]
          Length = 926

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 41/177 (23%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANA 60
           Y N  Q +     L+     +Q+ A   T S   + A AGSGKT +L +R+  L+     
Sbjct: 119 YRNRPQLNVNEDKLVEGLNPQQVEAVQHTGSPLLIIAGAGSGKTAVLTRRIAYLMGTRGV 178

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  +L +T T  AAAEM  RV +++   +                              
Sbjct: 179 APWEILAITFTNKAAAEMKERVGQLVGPVAE----------------------------- 209

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
                     + V T H+ C  I++Q       + ++F I D + S++L+    K  
Sbjct: 210 ---------RMWVATFHSICVRILRQQAQLVPGLNTNFTIYDGDDSRRLLTMIAKDM 257


>gi|213692487|ref|YP_002323073.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523948|gb|ACJ52695.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458632|dbj|BAJ69253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 897

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A     ++  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 96  VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133


>gi|187477915|ref|YP_785939.1| DNA helicase II [Bordetella avium 197N]
 gi|115422501|emb|CAJ49026.1| DNA helicase II [Bordetella avium 197N]
          Length = 750

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 77/224 (34%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++ +   +QL A       A V A AGSGKT +L  R+  L+    A P  +L +T T  
Sbjct: 2   MLDKLNPQQLAAVTLEPLHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGILAVTFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +   +                                       GL +
Sbjct: 62  AAREMLMRMAATMPIDTR--------------------------------------GLWI 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D          A K  L +  +D+ +   +   
Sbjct: 84  GTFHGLCNRMLRAHHRDAGLPQAFQILDTADQLA----AIKRLLKAQGIDDEKYPPRDVQ 139

Query: 194 EILEISNDEDIETLISDI--ISNRTALKLIFFFFSYLWRRKIIE 235
             +  S ++ +     +      R  +++   + +   R  +++
Sbjct: 140 RFINGSKEDGLRPAEVEAWDAHRRKLVEIYQLYEAQCQREGVVD 183


>gi|331699083|ref|YP_004335322.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953772|gb|AEA27469.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans
           CB1190]
          Length = 800

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 71/250 (28%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +    +       + A AGSGKT +L  R+  LL   + HP  ++ +T T  AAAEM
Sbjct: 28  NPRQVEAVTHAGSPLLIVAGAGSGKTRVLTHRIAWLLAERHVHPGEIMSITFTNKAAAEM 87

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 88  KERVDALVGRRA--------------------------------------NAMWVSTFHS 109

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------------LASI 180
            C  I+++      + S F++ D + S++L+    +                    L + 
Sbjct: 110 MCVRILRREAKHLGVRSAFSVYDADDSRRLVGIVARDLELDPKKFSARGLAAQISNLKNE 169

Query: 181 MLDNNEELKKA--------------FYEILEISNDEDIETLISDIISNRTALKLIFFFFS 226
           +L  ++  ++A              +   L  +N  D + LI + +S    L  +  ++ 
Sbjct: 170 LLSADDATERAGNDFERRVAEVYVGYQSRLRQANAFDFDDLIMETVSLLARLPAVAEYYR 229

Query: 227 YLWRRKIIEK 236
             +R  ++++
Sbjct: 230 RRFRHVLVDE 239


>gi|290580138|ref|YP_003484530.1| putative exonuclease [Streptococcus mutans NN2025]
 gi|254997037|dbj|BAH87638.1| putative exonuclease [Streptococcus mutans NN2025]
          Length = 1212

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++++R++  +L       L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + IT    L+++                      +  L   L       + T+ AF
Sbjct: 89  ERLEKKITEQLRLTNDTA-------------------LKQFLSEQLLGLQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ Q+     I+ +F I  D+ +   L  +            +  EL          
Sbjct: 130 TQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVR--NF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           + +    +    II      K+  F  +    ++ + ++  
Sbjct: 188 AGNRKDSSNFRQII-----YKIYDFSQATDNPQRWLLENFL 223


>gi|168483212|ref|ZP_02708164.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00]
 gi|168493077|ref|ZP_02717220.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06]
 gi|172043538|gb|EDT51584.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00]
 gi|183576624|gb|EDT97152.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06]
          Length = 1216

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGCQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K++F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|57238504|ref|YP_179635.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni RM1221]
 gi|218563082|ref|YP_002344861.1| putative recombination protein RecB [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|57167308|gb|AAW36087.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           RM1221]
 gi|112360788|emb|CAL35588.1| putative helicase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315927429|gb|EFV06767.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 921

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADEE 163
           +S F +++E 
Sbjct: 125 SSDFTMSEER 134


>gi|312898542|ref|ZP_07757932.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359]
 gi|310620461|gb|EFQ04031.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359]
          Length = 738

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 74/220 (33%), Gaps = 46/220 (20%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               QL A         V+A AGSGKT +L  R+ RLL     P  +L +T T  AA EM
Sbjct: 14  LNERQLEAVMHTEGPLSVTAGAGSGKTKVLTCRIARLLEIGTDPYRILAITFTNKAAKEM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + + T H+
Sbjct: 74  RERVQNLVGVAAE--------------------------------------RIWLSTFHS 95

Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  +++ +       T +F I D      L+    KS L  + LD+ +   +     + 
Sbjct: 96  FCAKLLRFEIDGFLGYTKNFTIYDSSDQVTLM----KSCLKELNLDDKQFPPRTVLGTVS 151

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            + +  +     +   +      +    +Y    K ++ +
Sbjct: 152 SAKNALLRA--DEFAKSADDFYTLKVSEAYTLYEKKLKDN 189


>gi|284040435|ref|YP_003390365.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
 gi|283819728|gb|ADB41566.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
          Length = 764

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            +D IS     Q  A    +    + A AGSGKT +L  R+  L+     P  +L LT T
Sbjct: 1   MVDYISGLNDPQREAVMHGSGPLMIIAGAGSGKTRVLTYRIAHLIENGVDPFRILSLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM +R+ +++   +                                        +
Sbjct: 61  NKAAGEMRNRIEKVVGTEAR--------------------------------------NI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++        TS+F+I D + SK L+    K  
Sbjct: 83  WMGTFHSVFAKILRIEAKAIGYTSNFSIYDTDDSKSLLRSIVKEM 127


>gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Streptococcus mutans UA159]
 gi|81588281|sp|Q8DT76|ADDA_STRMU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|24377868|gb|AAN59152.1|AE014982_1 putative exonuclease RexA [Streptococcus mutans UA159]
          Length = 1212

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++++R++  +L       L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + IT    L+++                      +  L   L       + T+ AF
Sbjct: 89  ERLEKKITEQLRLTNDTA-------------------LKQFLSEQLLGLQTADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ Q+     I+ +F I  D+ +   L  +            +  EL          
Sbjct: 130 TQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVR--NF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           + +    +    II      K+  F  +    ++ + ++  
Sbjct: 188 AGNRKDSSNFRQII-----YKIYDFSQATDNPQRWLLENFL 223


>gi|255531341|ref|YP_003091713.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366]
 gi|255344325|gb|ACU03651.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366]
          Length = 769

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 40/174 (22%)

Query: 14  IDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D ++    +Q  A + T+  A + A AGSGKT ++  RV  L+        +L LT T 
Sbjct: 1   MDYLAGLNPQQRAAVENTQGPAMIVAGAGSGKTRVITYRVAHLIEKGVDAFNILVLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+ +M  R++++I   +                                        + 
Sbjct: 61  KASKDMRERIMKVIGPEAK--------------------------------------NIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185
           + T H+    I++    +    S+F I D + SK LI    +   L   + + N
Sbjct: 83  MGTFHSVFAKILRVEAEKIGYPSNFTIYDTDDSKSLIRTILREMQLDDKLYNAN 136


>gi|239638038|ref|ZP_04678997.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603]
 gi|239596321|gb|EEQ78859.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603]
          Length = 730

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+    +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LVKNMNAEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAKEMKARVEQLVGEEAQV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|229548667|ref|ZP_04437392.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200]
 gi|307269775|ref|ZP_07551105.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248]
 gi|312953106|ref|ZP_07771955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102]
 gi|229306183|gb|EEN72179.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200]
 gi|306513885|gb|EFM82487.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248]
 gi|310628940|gb|EFQ12223.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102]
 gi|315036100|gb|EFT48032.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0027]
 gi|315153983|gb|EFT97999.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0031]
          Length = 791

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|187935645|ref|YP_001884643.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B]
 gi|187723798|gb|ACD25019.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B]
          Length = 750

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++L S    EQ   A        + A AGSGKT +L  R+  ++      P  +L +T T
Sbjct: 1   MELKSLLNKEQYEGAITIDGQLLILAGAGSGKTRVLTYRMAHMIENIGIAPYNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV+ +I + +                                        +
Sbjct: 61  NKAAKEMKDRVISLIGSKAE--------------------------------------NM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + T H+ C  I+++   +    S+F I D    K LI+E  K
Sbjct: 83  WISTFHSTCVRILRREIDKIGYNSNFTIYDTSDQKVLIKECMK 125


>gi|307289586|ref|ZP_07569530.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109]
 gi|306499400|gb|EFM68773.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109]
 gi|315164585|gb|EFU08602.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1302]
          Length = 791

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|237709818|ref|ZP_04540299.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455911|gb|EEO61632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 796

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + + +    Q  A       + V A AGSGKT +L  ++  LL     P ++L LT T  
Sbjct: 3   NYLEELNESQRDAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                                       +    L +
Sbjct: 63  AAREMKERIARQVG--------------------------------------DQARYLWM 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        +S+F I D   SK LI+   K  
Sbjct: 85  GTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKSLIKSIVKEM 127


>gi|99081864|ref|YP_614018.1| ATP-dependent DNA helicase Rep [Ruegeria sp. TM1040]
 gi|99038144|gb|ABF64756.1| ATP-dependent DNA helicase, Rep family [Ruegeria sp. TM1040]
          Length = 814

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D ++  + + +   D      + A AG+GKT  L  R++ LL    A  + +L +T T
Sbjct: 27  YLDGLNPAQRDAVETLD--GPVLMLAGAGTGKTKALTTRIVHLLNTNKARTNEILAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   +                                      G  
Sbjct: 85  NKAAREMKDRVGRMLGQPAE-------------------------------------GMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  ++++      + S+F I D +   +L+++     + +  +D+     + 
Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIQAAGIDDKRWPARM 163

Query: 192 FYEILEISNDEDI 204
              I++   +  +
Sbjct: 164 LANIIDDWKNRAL 176


>gi|308270800|emb|CBX27410.1| hypothetical protein N47_H22320 [uncultured Desulfobacterium sp.]
          Length = 657

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 89/242 (36%), Gaps = 43/242 (17%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           MI  N   +    I    +  + Q  A         V A AGSGKT  L  RV RL+   
Sbjct: 1   MIKENEIMQQKFCISYEKELNASQYEAVVHTKGPLLVIAGAGSGKTRTLTYRVARLVEEG 60

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P+++L LT T+ A+ EM                                   +++A +
Sbjct: 61  TPPASILLLTFTRKASQEM-----------------------------------LNRATN 85

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           LL    E   G    T H+F   I++++       S F I D + S+ LI   +K  L +
Sbjct: 86  LLDKRCEGVSG---GTFHSFANYILRRYSRYIGFDSGFNILDRDDSEALIGIVRKEMLNT 142

Query: 180 IMLDNNEELKKAFYEILEISNDE--DIETLIS-DIISNRTALKLIFFFFSYLWRRKIIEK 236
               +    K+    I   + ++   I  +I  D I     +++I        RRKI+  
Sbjct: 143 SKHSSFPR-KQTLANIFGKAANKVLSISDVIQNDYIHFEDDIEMIEMIHKEYARRKILHS 201

Query: 237 SL 238
            L
Sbjct: 202 YL 203


>gi|205356088|ref|ZP_03222855.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345931|gb|EDZ32567.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 921

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADEE 163
           +S F +++E 
Sbjct: 125 SSDFTMSEER 134


>gi|149928113|ref|ZP_01916360.1| UvrD/REP helicase [Limnobacter sp. MED105]
 gi|149823199|gb|EDM82436.1| UvrD/REP helicase [Limnobacter sp. MED105]
          Length = 743

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 46/226 (20%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           + L+     EQL A   P  SA + A AGSGKT +L  R+  L+      P+ +L +T T
Sbjct: 1   MSLLDSLNPEQLAAVTLPRESALILAGAGSGKTKVLTARIAWLIQTGQVGPNGVLAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM HR+  ++                                            +
Sbjct: 61  NKAAKEMLHRISTMLPI--------------------------------------NTRSM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H  C  +++    EA +   F I D +        A K     + +D  +   K 
Sbjct: 83  WVGTFHGLCNRMLRAHWKEAGLPQAFQILDMQDQLS----AIKRMYKVLGIDAEKFPPKQ 138

Query: 192 FYEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
               +  + D+ +     +     +R  ++L   + +   R  +++
Sbjct: 139 LSYFVGSAKDQGLRPKDVEAHDEYHRMMVRLYEAYEAQCQREGVVD 184


>gi|146300673|ref|YP_001195264.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
 gi|146155091|gb|ABQ05945.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
          Length = 778

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           + ID +++ + + +L  D      + A AGSGKT +L  R+  L+        +L LT T
Sbjct: 3   KYIDQLNEAQRQPVLKKD--GPMIIIAGAGSGKTRVLTIRIAYLMAQGVDAFNILSLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM HR+ +I+ A    +                                     L
Sbjct: 61  NKAAREMKHRIADIVGASEAKN-------------------------------------L 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S+F I D + S +LI    K  
Sbjct: 84  WMGTFHSIFARILRSESDHLGYPSNFTIYDSQDSARLISSIIKEM 128


>gi|329667843|gb|AEB93791.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 748

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            SE   L      ++           V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV +++   +                                      
Sbjct: 61  TFTNKAATEMKERVQKLLGPAA-------------------------------------- 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++   +   +++F+IAD  +   LI+  +K  
Sbjct: 83  DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 130


>gi|329929647|ref|ZP_08283344.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5]
 gi|328935973|gb|EGG32428.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5]
          Length = 673

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 45/192 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + +  ++  + + + A+D      + A AGSGKT +L  R+  L+    A P ++L +T 
Sbjct: 8   DAVRRLNPQQRQAVEATD--GPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWSILAITF 65

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV +++                                            
Sbjct: 66  TNKAAREMQERVSKLVGREGQ--------------------------------------D 87

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++       TS+F+I D      +I    ++ +    +D  +   K
Sbjct: 88  IWVSTFHSMCVRILRRDIERIGFTSNFSILDSTDQLSVI----RNVMKQHNIDPKKFEPK 143

Query: 191 AFYEILEISNDE 202
           A    +  + +E
Sbjct: 144 AIQAAMSAAKNE 155


>gi|289167909|ref|YP_003446178.1| exonuclease RexA [Streptococcus mitis B6]
 gi|288907476|emb|CBJ22313.1| exonuclease RexA [Streptococcus mitis B6]
          Length = 1216

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     SD                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISQQIQESD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L++         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQSKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
 gi|226243538|dbj|BAH53886.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
          Length = 827

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 75/254 (29%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L +R+  LL      P  +L +T T  AAAEM
Sbjct: 35  NPPQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEM 94

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T H+
Sbjct: 95  RERVAHLVGPRA--------------------------------------NSMWVSTFHS 116

Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST------------------LAS 179
            C  I++ Q  L   + S+F+I D + S++L+    K                    L +
Sbjct: 117 SCVRILRAQAALLPGLNSNFSIYDADDSRRLLTMISKDLNIDTKRYSARLLATHISNLKN 176

Query: 180 IMLDNNEELKKA-----------------FYEILEISNDEDIETLISDIISNRTALKLIF 222
            ++D  +    A                 + + L  +N  D + LI + ++   A   + 
Sbjct: 177 ELVDPEQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQVA 236

Query: 223 FFFSYLWRRKIIEK 236
            ++   +R  ++++
Sbjct: 237 EYYRRRFRHVLVDE 250


>gi|189502292|ref|YP_001958009.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497733|gb|ACE06280.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 913

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 39  NAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
            AGSGKT++LV+  L+L L A  +   +L +T T  A  EM  R+L  +   +   + +L
Sbjct: 10  AAGSGKTYVLVKAYLQLALRAPLYFQRILAVTFTNRATQEMKQRILNSLHDIAQGKESLL 69

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
           + E+ +  G   +K    +A+ +L  +L       V TI +F ++I++ F  E  I   F
Sbjct: 70  TQELNQANGWD-SKELQKRAQAVLSKVLHNYDHFSVGTIDSFLQSIVRNFSKELGIQHGF 128

Query: 158 AIADEEQSKKLIEEAKKSTLASIMLD 183
            I  E   + ++       + +   D
Sbjct: 129 TI--EMDQETILNYIIDDVINTANQD 152


>gi|255973804|ref|ZP_05424390.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2]
 gi|255966676|gb|EET97298.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2]
          Length = 746

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 6   NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 66  KERVNKLLETGGE--------------------------------------DVWVSTFHS 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 88  MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 125


>gi|49484146|ref|YP_041370.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295428487|ref|ZP_06821114.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|68605635|sp|Q6GFF2|PCRA_STAAR RecName: Full=ATP-dependent DNA helicase pcrA
 gi|49242275|emb|CAG40982.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295127469|gb|EFG57108.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 730

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAREMKERVQKLVGDQAEV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|311107257|ref|YP_003980110.1| DNA helicase II [Achromobacter xylosoxidans A8]
 gi|310761946|gb|ADP17395.1| DNA helicase II [Achromobacter xylosoxidans A8]
          Length = 764

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++ +   EQ  A     + A V A AGSGKT +L  R+  L+    A P  LL +T T  
Sbjct: 2   MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  I+   +                                       GL +
Sbjct: 62  AAREMLARMSAILPIDTR--------------------------------------GLWI 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C  +++    +A +   F I D          A K  + +  +D+ +   +   
Sbjct: 84  GTFHGLCNRMLRAHHRDAGLPQSFQILDVTDQLA----AIKRLMKANGVDDEKYPPRDVQ 139

Query: 194 EILEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIE 235
             +  + +E +     +      R  +++   + +   R  +++
Sbjct: 140 RFINGAKEEGLRPADVEAYDAHRRRLIEIYQLYEAQCLREGVVD 183


>gi|256844935|ref|ZP_05550393.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2]
 gi|256718494|gb|EEU32049.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2]
          Length = 737

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           +   ++ ++  + E   AS    S  + A AGSGKT  +  R+  ++      P ++L +
Sbjct: 2   NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAV 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV E++   +                                      
Sbjct: 60  TFTNKAAKEMRERVEELVGNIAKAC----------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               + T H+F   +++ +  E    S+F I D +  K++++   K
Sbjct: 85  ---TISTFHSFGMRLLRMYAKEVEYNSNFTIYDTDDQKRIVKAILK 127


>gi|86149295|ref|ZP_01067526.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86152901|ref|ZP_01071106.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88596029|ref|ZP_01099266.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|85840077|gb|EAQ57335.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85843786|gb|EAQ60996.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190870|gb|EAQ94842.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|284926688|gb|ADC29040.1| putative recombination protein RecB [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315930547|gb|EFV09587.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 921

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADEE 163
           +S F +++E 
Sbjct: 125 SSDFTMSEER 134


>gi|296327497|ref|ZP_06870043.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155323|gb|EFG96094.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 739

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++L+ +   +Q   AS    S  + A AG+GKT  +  R+  ++      P ++L +T T
Sbjct: 5   LNLLEKLNDKQKEAASQIDGSILILAGAGAGKTRTITYRIAHMIENVGISPYSILAVTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++   + +                                       
Sbjct: 65  NKAAKEMRERVEDLVGDIAKVC-------------------------------------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + T H+F   +++ +  EA   S+F I D +  KK+++   K
Sbjct: 87  TISTFHSFGMRLLRMYAKEAGYNSNFTIYDTDDQKKIVKAILK 129


>gi|255971180|ref|ZP_05421766.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1]
 gi|256761491|ref|ZP_05502071.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3]
 gi|255962198|gb|EET94674.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1]
 gi|256682742|gb|EEU22437.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3]
 gi|323479917|gb|ADX79356.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis 62]
          Length = 746

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 6   NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 66  KERVNKLLETGGE--------------------------------------DVWVSTFHS 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 88  MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 125


>gi|7007365|emb|CAB75588.1| putative DNA helicase [Prochlorococcus marinus str. PAC1]
          Length = 512

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 17/171 (9%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
            ++     Q  A D       V A AGSGKT  L  R+  L+      PS++L +T T  
Sbjct: 8   FLNGLNEAQSHAVDHFHGPLLVVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNK 67

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                ++  ++  ++ + +         E    L +
Sbjct: 68  AAREMKDRLELLLAKRLSSLTHGKPWRALQVAEQREIRNRIHR---------EISRELWI 118

Query: 134 QTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
            T HA    +++    +F     +  T  F+I DE  ++ LI+E     L 
Sbjct: 119 GTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDETDAQSLIKEIVTQDLQ 169


>gi|86133361|ref|ZP_01051943.1| UvrD/REP helicase [Polaribacter sp. MED152]
 gi|85820224|gb|EAQ41371.1| UvrD/REP helicase [Polaribacter sp. MED152]
          Length = 774

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 48/217 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D +++ + + +L  D      + A AGSGKT +L  R+  L+ +      +L LT T 
Sbjct: 4   YLDSLNEPQKQAVLQKD--GPMIIIAGAGSGKTRVLTYRIAHLMQSGVDAFNILSLTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++      +                                     L 
Sbjct: 62  KAAREMKERIAGVVGQSEAKN-------------------------------------LW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNE----- 186
           + T H+    I++    +    S+F I D + S +L+    K   L        +     
Sbjct: 85  MGTFHSVFARILRSEADKLGFPSNFTIYDTQDSVRLMGTIIKEMNLDKERYKPKQILGRI 144

Query: 187 -ELKKAFYEILEISNDEDIETLISDIISNRTALKLIF 222
              K +   +    N+ D++   +D+ ++R  +  I+
Sbjct: 145 SSFKNSLITVRAYFNNSDLQE--ADMHASRPKVGDIY 179


>gi|315605038|ref|ZP_07880092.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313317|gb|EFU61380.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 932

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++   +       + A AGSGKT +L  R+  LL    A    +L +T T  AAAEM
Sbjct: 91  NDRQREAVTHAGAPLLILAGAGSGKTRVLTHRIAYLLATGRARAGQILAITFTNKAAAEM 150

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R   ++   +                                        + V T H+
Sbjct: 151 RERAGALVGGDAR--------------------------------------RMWVSTFHS 172

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  +++     A ++S F I D + S++LI+   K+ 
Sbjct: 173 ACVRLLRYEHEAAGLSSSFTIYDAQDSQRLIQMVLKAM 210


>gi|288802440|ref|ZP_06407879.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18]
 gi|288334968|gb|EFC73404.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18]
          Length = 851

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 38/161 (23%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++     Q  A +  T  + V A AGSGKT +L  ++  LL     P  +L LT T  AA
Sbjct: 11  LAALNESQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLAPWNILALTFTNKAA 70

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ +I TA                            A+HL +            T
Sbjct: 71  REMKERIAQITTA--------------------------KDAQHLYM-----------GT 93

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+    I+++        S+F I DE  S+ LI+   K+ 
Sbjct: 94  FHSIFARILRREGEAIGFGSNFTIYDENDSRSLIKSIVKAL 134


>gi|237666682|ref|ZP_04526667.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237657881|gb|EEP55436.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 757

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 40/166 (24%)

Query: 13  TIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
            +DL +    EQ   A+       + A AGSGKT +L  R+  ++   N  P  +L +T 
Sbjct: 1   MLDLKNLLNKEQYEGATTIEGQVLILAGAGSGKTRVLTHRIAHMVEDLNIAPYNILAITF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  +I   +                                        
Sbjct: 61  TNKAAKEMKDRVRALIGECAE--------------------------------------N 82

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + + T H+ C  I+ +   +    S F I D    K L++E  K+ 
Sbjct: 83  MWISTFHSTCVKILIREIDKIGYKSSFTIYDSSDQKTLVKECMKTV 128


>gi|319937196|ref|ZP_08011603.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
 gi|319807562|gb|EFW04155.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
          Length = 715

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++  A+       + A AGSGKT +L  R+  L+      P  +L +T T  AA EM
Sbjct: 8   NPRQKEAATYLDSHLRIIAGAGSGKTRVLTYRIAYLIEEVGIEPRHILAITFTNKAANEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV+ ++  ++                                      GG  + TIH+
Sbjct: 68  KERVIGLLGDYA--------------------------------------GGSLLCTIHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C  I++Q     N  ++F I DEE  K L+++  K 
Sbjct: 90  LCVRILRQNIRALNYPNNFIIMDEEDQKSLLKKIFKE 126


>gi|298246492|ref|ZP_06970298.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297553973|gb|EFH87838.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 837

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 44/184 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
            E    +D +++ + +    +       + A  GSGKT ++  R+  L+   +  P  +L
Sbjct: 2   LEQINLLDGLNEPQRQ--AVTTTQGPVLILAGPGSGKTRVITHRIAYLVQHEHVSPWHIL 59

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+ +++   +                                    
Sbjct: 60  AVTFTNKAAREMRERMEKLVGVSASKD--------------------------------- 86

Query: 127 TPGGLKVQTIHAFCEAIMQQFP---LEANITSHFAIADEEQSKKLIEEAKKST-LASIML 182
               + + T HA C  +++      L   +   F I D +    L+++A +   L   + 
Sbjct: 87  ----MSIGTFHAICARVLRMEADALLPLGLNRSFVILDTDDQLSLVKQAIRELNLDEKLY 142

Query: 183 DNNE 186
             N 
Sbjct: 143 RPNA 146


>gi|148241321|ref|YP_001226478.1| UvrD/REP helicase [Synechococcus sp. RCC307]
 gi|147849631|emb|CAK27125.1| UvrD/REP helicase [Synechococcus sp. RCC307]
          Length = 784

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 17/173 (9%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+    A P+ +L +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R          L+ ++  ++  +  G  P          +   +++    L
Sbjct: 61  NKAAREMKER------LQLLLAQKLAQSQFGQPWGTLPAVEQRQLRSRIEREVIK---EL 111

Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
            + T HA    +++    +F     +  T  F+I DE  ++ L++E     L 
Sbjct: 112 WIGTFHALFSRLLRFDIDKFKDPEGLCWTKQFSIYDEADAQSLVKEIVTQELQ 164


>gi|315156747|gb|EFU00764.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0043]
          Length = 791

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 51  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170


>gi|257080987|ref|ZP_05575348.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol]
 gi|256989017|gb|EEU76319.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol]
          Length = 752

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 12  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 72  KERVNKLLETGGE--------------------------------------DVWVSTFHS 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 94  MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131


>gi|289577825|ref|YP_003476452.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9]
 gi|289527538|gb|ADD01890.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9]
          Length = 711

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 42/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +D ++  + E ++ ++      + A AGSGKT +L  R+  L+      PS +L +
Sbjct: 1   MNSILDNLNDKQKEAVMTTE--GPLLILAGAGSGKTRVLTHRIAYLIKEKKISPSNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV E++                                          
Sbjct: 59  TFTNKAAEEMKTRVEELLGYI--------------------------------------- 79

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           G L V T H+    I+++   +     +F I D    K LI+E  K  
Sbjct: 80  GDLWVSTFHSASVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127


>gi|86605998|ref|YP_474761.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab]
 gi|86554540|gb|ABC99498.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab]
          Length = 776

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 26/176 (14%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++  + +            V A AGSGKT  L  R+  L+      P  +L +T T
Sbjct: 1   MLDALNPAQRQ--AVHHFCGPLLVVAGAGSGKTRTLAYRIAHLIRHYRVDPEEILAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET-PGG 130
             AA EM  R+ ++              E  +  G    + + ++A  L   +       
Sbjct: 59  NKAAREMKERIEQLFAE----------QEAQEQFGIPLEELEPAQATRLKSAVYHRWIKP 108

Query: 131 LKVQTIHAFCEAIMQQFPLEAN--ITS-------HFAIADEEQSKKLIEEAKKSTL 177
           L + T H+    I++   LE              +F+I DE  ++ L++E     L
Sbjct: 109 LWIGTFHSLFAQILR---LEIEKYQDPKGRKWTRNFSIFDESDAQSLVKEIVTKQL 161


>gi|29375317|ref|NP_814471.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583]
 gi|256617608|ref|ZP_05474454.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200]
 gi|256854412|ref|ZP_05559776.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8]
 gi|256959857|ref|ZP_05564028.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96]
 gi|256964441|ref|ZP_05568612.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704]
 gi|257083649|ref|ZP_05578010.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1]
 gi|257086081|ref|ZP_05580442.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6]
 gi|257089148|ref|ZP_05583509.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188]
 gi|257415291|ref|ZP_05592285.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis AR01/DG]
 gi|257418333|ref|ZP_05595327.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11]
 gi|300861762|ref|ZP_07107842.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11]
 gi|29342777|gb|AAO80541.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583]
 gi|256597135|gb|EEU16311.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200]
 gi|256709972|gb|EEU25016.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8]
 gi|256950353|gb|EEU66985.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96]
 gi|256954937|gb|EEU71569.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704]
 gi|256991679|gb|EEU78981.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1]
 gi|256994111|gb|EEU81413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6]
 gi|256997960|gb|EEU84480.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188]
 gi|257157119|gb|EEU87079.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ARO1/DG]
 gi|257160161|gb|EEU90121.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11]
 gi|300848287|gb|EFK76044.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11]
          Length = 752

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 12  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 72  KERVNKLLETGGE--------------------------------------DVWVSTFHS 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 94  MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131


>gi|82751561|ref|YP_417302.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|82657092|emb|CAI81529.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 730

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAREMKERVQKLVGDQAEV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|194367719|ref|YP_002030329.1| DNA-dependent helicase II [Stenotrophomonas maltophilia R551-3]
 gi|194350523|gb|ACF53646.1| DNA helicase II [Stenotrophomonas maltophilia R551-3]
          Length = 730

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 45/196 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L  R+  L  +       +  
Sbjct: 2   DVSHLLDGLNPAQREAVSA--PPGHHLVLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR+   +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRIDAQLPNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
             G+ + T H     +++    +A +   F + D +   +L     K  + ++ LD+ + 
Sbjct: 84  --GMWIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQLRL----VKRVVQALELDDGKY 137

Query: 188 LKKAFYEILEISNDED 203
             K     +    DE 
Sbjct: 138 PAKQIAWWINAQKDEG 153


>gi|327438551|dbj|BAK14916.1| superfamily I DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 752

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 43/190 (22%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L++    +Q  A         + A AGSGKT +L  R+  L++    +PS +L +T T 
Sbjct: 7   NLVAGMNPQQAEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVVEREVYPSKILAITFTN 66

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  I+   +  S                                     + 
Sbjct: 67  KAAREMRERIDGILGNGTTES-------------------------------------MW 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I+++       +  F+I D      +I    K+ L    +D  +   +A 
Sbjct: 90  VSTFHSMCVRILRRNIDRIGYSKSFSILDSSDQLTVI----KNILKQDNIDPKKYDPRAI 145

Query: 193 YEILEISNDE 202
              +  + +E
Sbjct: 146 LNTISSAKNE 155


>gi|317968538|ref|ZP_07969928.1| UvrD/REP helicase [Synechococcus sp. CB0205]
          Length = 792

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 77/218 (35%), Gaps = 28/218 (12%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +  +S     Q  A D       V A AGSGKT  L  R+  ++      P+ LL +T T
Sbjct: 1   MSFLSGLNDAQRKAVDHHEGPLLVVAGAGSGKTRALTHRIAHMIGQHGVDPAELLAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++        + L+              D  + R  +    E    L
Sbjct: 61  NKAAREMKERLELLLA-------QKLAQSQFGQPWSTLAAVDQRQLRSRIYR--EVIKDL 111

Query: 132 KVQTIHAFCEAIMQQFPLEAN--ITS-------HFAIADEEQSKKLIEEAKKSTLASIML 182
            + T HA    +++    + +             F+I DE  ++ L++E        + L
Sbjct: 112 WIGTFHALFARLLR---FDIDKFRDPEGLTWTRQFSIYDEGDTQSLVKEIVTQ---ELGL 165

Query: 183 DNNEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218
           D      K     +  + ++    E L +D    R  L
Sbjct: 166 DPKRFEPKKVRWAISNAKNQGWMPEQLEADAGGQRGKL 203


>gi|149914444|ref|ZP_01902975.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b]
 gi|149811963|gb|EDM71796.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b]
          Length = 786

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +     EQ  A         + A AG+GKT  L +R++ LL    A PS +L +T T  
Sbjct: 27  YLDDLNPEQRAAVQALEGPVLMLAGAGTGKTKALTKRIVHLLNTGSARPSEILAVTFTNK 86

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++                                          G   +
Sbjct: 87  AAREMKSRVGRMLGEAVE-------------------------------------GMPWL 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++      + S+F I D +   +L+++     + +  +D+     +   
Sbjct: 110 GTFHSICVKILRRHQELVGLKSNFTILDTDDQIRLLKQ----LIQAANIDDKRWPARHLA 165

Query: 194 EILEISNDEDI 204
            +++   +   
Sbjct: 166 GVIDNWKNRAW 176


>gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134265444|gb|ABO65639.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 724

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L    K +Q           + A AGSGKT +L  R+  L+   +  P  +L +T T  A
Sbjct: 9   LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVVPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMRERVQALLGGAAE--------------------------------------DVWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F+I D      +I+   K 
Sbjct: 91  TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVIKAILKE 131


>gi|297590041|ref|ZP_06948681.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297577169|gb|EFH95883.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MN8]
          Length = 739

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAREMKERVQKLVGDQAEV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|296454009|ref|YP_003661152.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183440|gb|ADH00322.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 897

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A     ++  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 96  VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133


>gi|293378593|ref|ZP_06624754.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
 gi|292642783|gb|EFF60932.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
          Length = 425

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 46/193 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +  +D ++  +++ +  ++      + A AGSGKT +L  RV  L+   N  P  +L +T
Sbjct: 4   NNLLDKMNDKQAQAVRCTE--GPLLIMAGAGSGKTRVLTHRVAYLIQEKNVLPWHVLAIT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++                                       E   
Sbjct: 62  FTNKAAREMRERVDKLLG--------------------------------------EAGS 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-EL 188
            + V T HA C  I+++   +      F IA   + + L+    K  LA + +D    + 
Sbjct: 84  DIWVSTFHALCVRILRREAEKIGFNRSFTIASPSEQRTLM----KHILADLNVDTKRYDP 139

Query: 189 KKAFYEILEISND 201
           +     I    ND
Sbjct: 140 RMVLSNISNAKND 152


>gi|268315971|ref|YP_003289690.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333505|gb|ACY47302.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 768

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 40/169 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           +  +  ++ ++  + + +  ++      + A  GSGKT  L  R+  L+    A P  +L
Sbjct: 22  EAAARILEGLNPVQRQAVQVTE--GPVLIIAGPGSGKTRTLTHRIAYLIATGRARPHQIL 79

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T  AA EM  R+  ++ A +                          ARH       
Sbjct: 80  ALTFTNKAAREMMERIERLVGAEA--------------------------ARH------- 106

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               + + T HA    I+++       T  F+I D + S++L+ E    
Sbjct: 107 ----IWMGTFHAIFARILRREGHRIGYTPDFSIYDTDDSERLLRELMAR 151


>gi|149025505|ref|ZP_01836438.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72]
 gi|147929377|gb|EDK80374.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72]
          Length = 1216

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAANELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|328950824|ref|YP_004368159.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
 gi|328451148|gb|AEB12049.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
          Length = 716

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 40/162 (24%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
           +DL+      Q  A    T  A V A AGSGKT  +V R+  L+     +P+ +L +T T
Sbjct: 1   MDLLRDLNPAQREAVQHYTGPALVVAGAGSGKTRTVVHRIAYLIRHRGVYPTEILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++   +                                        L
Sbjct: 61  NKAAGEMKERLARMVGPAAR--------------------------------------EL 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            V T H+    I++ +     +   F + DE+    L++E  
Sbjct: 83  WVSTFHSAALRILRVYGEYIGLKPGFVVYDEDDQLALLKEVL 124


>gi|295114066|emb|CBL32703.1| ATP-dependent DNA helicase PcrA [Enterococcus sp. 7L76]
          Length = 752

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 12  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 72  KERVNKLLETGGE--------------------------------------DVWVSTFHS 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 94  MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131


>gi|256957408|ref|ZP_05561579.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5]
 gi|257077596|ref|ZP_05571957.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1]
 gi|294779926|ref|ZP_06745307.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1]
 gi|256947904|gb|EEU64536.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5]
 gi|256985626|gb|EEU72928.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1]
 gi|294452975|gb|EFG21396.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1]
          Length = 752

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 12  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 72  KERVNKLLETGGE--------------------------------------DVWVSTFHS 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 94  MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131


>gi|209523272|ref|ZP_03271828.1| UvrD/REP helicase [Arthrospira maxima CS-328]
 gi|209496423|gb|EDZ96722.1| UvrD/REP helicase [Arthrospira maxima CS-328]
          Length = 1070

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 39/223 (17%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75
           +S T  +Q  A+ P +S  V+A AG+GKT++LV+R L  L+     P  ++ +T T+ AA
Sbjct: 1   MSLTNEQQAAATSP-QSIIVTAGAGTGKTYMLVERYLYYLVEKGLSPLEIVAVTFTEKAA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+   +                    + PN+ D          IL       + T
Sbjct: 60  QELRSRIRSQVRQ------------------QLPNRPD----------ILAELEAAPIST 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHA    I ++ P  AN+ + F + ++ + K  + E  ++ L+ + +   E +  +    
Sbjct: 92  IHALASRICREHPQAANVAADFQVLEDLEGKIWLYEGLETALSKLPIQVFETIPYSLLSR 151

Query: 196 LEISNDEDIETLISD-IISNRTALKLIFFF-FSYLWRRKIIEK 236
           +       + TL+ D +++ R+  + I +   +   R + +E 
Sbjct: 152 I-------LATLLDDPLMAERSLNQQIDWSELAQQLRDRALED 187


>gi|146337792|ref|YP_001202840.1| putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278]
 gi|146190598|emb|CAL74600.1| Putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278]
          Length = 686

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 60/167 (35%), Gaps = 36/167 (21%)

Query: 16  LISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            +     EQ  A +       P     + A AGSGKT+ L  RV  LL+  A P  +L +
Sbjct: 8   YLDDLNPEQRRAVEHGGTSAAPGPPLLIIAGAGSGKTNTLAHRVAHLLVNGADPRRILLM 67

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AA+EMS RV  I         E ++A +T                          
Sbjct: 68  TFSRRAASEMSRRVERIARKVLGGQAEAITAGLT-------------------------- 101

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 T H     +++++     +   F I D E S  L+   +  
Sbjct: 102 ---WAGTFHGLGARMLREYAERIGLDPVFTIHDREDSADLMNLVRHE 145


>gi|15924895|ref|NP_372429.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927479|ref|NP_375012.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268378|ref|YP_001247321.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394440|ref|YP_001317115.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980221|ref|YP_001442480.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316914|ref|ZP_04840127.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006692|ref|ZP_05145293.2| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257426037|ref|ZP_05602459.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428710|ref|ZP_05605105.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431320|ref|ZP_05607696.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434038|ref|ZP_05610389.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436942|ref|ZP_05612984.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257793289|ref|ZP_05642268.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781]
 gi|258408883|ref|ZP_05681165.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763]
 gi|258421013|ref|ZP_05683944.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719]
 gi|258422982|ref|ZP_05685881.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635]
 gi|258430015|ref|ZP_05688385.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299]
 gi|258443467|ref|ZP_05691809.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115]
 gi|258445325|ref|ZP_05693516.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258447889|ref|ZP_05696023.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224]
 gi|258453322|ref|ZP_05701307.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937]
 gi|269203558|ref|YP_003282827.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894572|ref|ZP_06302800.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117]
 gi|282904536|ref|ZP_06312421.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906309|ref|ZP_06314161.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909225|ref|ZP_06317041.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911530|ref|ZP_06319330.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914703|ref|ZP_06322488.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282917252|ref|ZP_06325007.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919740|ref|ZP_06327472.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925144|ref|ZP_06332804.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282928078|ref|ZP_06335685.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102]
 gi|283771055|ref|ZP_06343946.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958666|ref|ZP_06376112.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293507780|ref|ZP_06667622.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510282|ref|ZP_06668988.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293539337|ref|ZP_06672016.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407286|ref|ZP_06817085.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819]
 gi|296275663|ref|ZP_06858170.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297246189|ref|ZP_06930040.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796]
 gi|54038823|sp|P64319|PCRA_STAAN RecName: Full=ATP-dependent DNA helicase pcrA
 gi|54041649|sp|P64318|PCRA_STAAM RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13701698|dbj|BAB42991.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247677|dbj|BAB58067.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741447|gb|ABQ49745.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946892|gb|ABR52828.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722356|dbj|BAF78773.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257271180|gb|EEV03337.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274354|gb|EEV05866.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277969|gb|EEV08625.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257280964|gb|EEV11108.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283731|gb|EEV13856.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257787261|gb|EEV25601.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781]
 gi|257840330|gb|EEV64792.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763]
 gi|257842961|gb|EEV67379.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719]
 gi|257846769|gb|EEV70784.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635]
 gi|257849609|gb|EEV73577.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299]
 gi|257851352|gb|EEV75292.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115]
 gi|257855843|gb|EEV78767.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257858821|gb|EEV81690.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224]
 gi|257864530|gb|EEV87273.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937]
 gi|262075848|gb|ACY11821.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282313102|gb|EFB43500.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316378|gb|EFB46755.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318879|gb|EFB49234.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321417|gb|EFB51743.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324539|gb|EFB54851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282326793|gb|EFB57090.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330506|gb|EFB60023.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590142|gb|EFB95223.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102]
 gi|282595092|gb|EFC00059.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763059|gb|EFC03191.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117]
 gi|283459649|gb|EFC06740.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471176|emb|CAQ50387.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789706|gb|EFC28528.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817586|gb|ADC38073.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus
           04-02981]
 gi|290919872|gb|EFD96941.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094843|gb|EFE25111.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466646|gb|EFF09166.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M809]
 gi|294967861|gb|EFG43891.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819]
 gi|297176896|gb|EFH36153.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796]
 gi|298695247|gb|ADI98469.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333570|gb|ADL23763.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|312437628|gb|ADQ76699.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312830278|emb|CBX35120.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129285|gb|EFT85279.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315193435|gb|EFU23832.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|329724791|gb|EGG61295.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 730

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAREMKERVQKLVGDQAEV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|282881333|ref|ZP_06290013.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304809|gb|EFA96889.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis
           CRIS 5C-B1]
          Length = 808

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 39/165 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E +  +++  S+Q   +       V A AGSGKT +L  ++   +     P  +L LT T
Sbjct: 3   ELLGQLNE--SQQAAVTYNDGPQLVIAGAGSGKTRVLTYKIAYQIQQGMKPWNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                                       +T   +
Sbjct: 61  NKAANEMKERIGQLVGH-------------------------------------QTARYI 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++         S F I DE  S+ L++   K  
Sbjct: 84  NMGTFHSIFARILRSEAARVGYRSGFTIYDESDSRSLLKAIIKEM 128


>gi|171059448|ref|YP_001791797.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
 gi|170776893|gb|ACB35032.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
          Length = 848

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 46/224 (20%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQ  A       A + A AGSGKT +L  R+  LL      P  L+ +T T  
Sbjct: 48  LLANLNPEQYAAVTLAAEPALILAGAGSGKTRVLTTRIAWLLQTGQIGPGGLMAVTFTNK 107

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM HR+  ++                                           G+ +
Sbjct: 108 AAKEMVHRLSTMLPY--------------------------------------NVRGMWI 129

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C   ++     A +   F I D   +      A K  + ++ LD    + K   
Sbjct: 130 GTFHGLCNRFLRAHWKMAGLPQSFQILDSGDTLS----AVKRVIKAMKLDEERFVPKQVS 185

Query: 194 EILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +  S D+      L +D    RT +++   +     R  +++
Sbjct: 186 WFIASSKDDGKRPKDLPTDDGQARTMVEIYQAYEDQCQREGVVD 229


>gi|163794460|ref|ZP_02188431.1| UvrD/REP helicase [alpha proteobacterium BAL199]
 gi|159180184|gb|EDP64707.1| UvrD/REP helicase [alpha proteobacterium BAL199]
          Length = 798

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 45/193 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +  ++  +   + A D      V A AG+GKT +L  R+  LL L  A P  +L +T T
Sbjct: 31  YLSGLNPAQRAAVEALD--GPVLVLAGAGTGKTRVLTTRLAHLLALGKARPWNVLAVTFT 88

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+ EM  RV  I+   +                                        +
Sbjct: 89  NRASREMKERVARIVGPAAE--------------------------------------QV 110

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA    I+++      + S+F I D +   +L+++     L +  +D+     + 
Sbjct: 111 WLGTFHALAARILRRHAEVVGLRSNFTILDADDQVRLLKQ----VLQAEDIDDKRWPARV 166

Query: 192 FYEILEISNDEDI 204
              +++   D  +
Sbjct: 167 VMGVIQRWKDRGL 179


>gi|323439849|gb|EGA97565.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
 gi|323443012|gb|EGB00633.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
          Length = 730

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAREMKERVQKLVGDQAEV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|299749616|ref|XP_002911398.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130]
 gi|298408518|gb|EFI27904.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130]
          Length = 966

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           DL+    S QL A+   P  S  + A  GSGKT +L  R+  L+   +  P+++  +T T
Sbjct: 4   DLLKGLNSAQLKAATYPPNTSLQILAGPGSGKTRVLTTRIAHLITNCHLPPNSICAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                                       E    L
Sbjct: 64  NKAANEMKERLTKLLGK-------------------------------------ERTAQL 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           K+ T H+ C   ++++  + ++  +F + D  +SKK+I    K 
Sbjct: 87  KLGTFHSLCARFLRKYSKQVSVPDNFTVCDAGESKKMITSILKE 130


>gi|253734985|ref|ZP_04869150.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253727167|gb|EES95896.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 730

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAREMKERVQKLVGDQAEV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|21283575|ref|NP_646663.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486724|ref|YP_043945.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650656|ref|YP_186790.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160459|ref|YP_494538.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195804|ref|YP_500614.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222055|ref|YP_001332877.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510128|ref|YP_001575787.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253729683|ref|ZP_04863848.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451029|ref|ZP_05699065.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948]
 gi|282923244|ref|ZP_06330925.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765]
 gi|284024952|ref|ZP_06379350.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus 132]
 gi|294849454|ref|ZP_06790196.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754]
 gi|297208935|ref|ZP_06925339.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300913008|ref|ZP_07130446.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304379093|ref|ZP_07361840.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|38604904|sp|Q8NVT1|PCRA_STAAW RecName: Full=ATP-dependent DNA helicase pcrA
 gi|68605626|sp|Q6G828|PCRA_STAAS RecName: Full=ATP-dependent DNA helicase pcrA
 gi|81694154|sp|Q5HEL7|PCRA_STAAC RecName: Full=ATP-dependent DNA helicase pcrA
 gi|110282982|sp|Q53727|PCRA_STAA8 RecName: Full=ATP-dependent DNA helicase pcrA
 gi|21205016|dbj|BAB95711.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245167|emb|CAG43633.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284842|gb|AAW36936.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126433|gb|ABD20947.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203362|gb|ABD31172.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374855|dbj|BAF68115.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368937|gb|ABX29908.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253726569|gb|EES95298.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257861271|gb|EEV84083.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948]
 gi|269941377|emb|CBI49774.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282593155|gb|EFB98154.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765]
 gi|294823591|gb|EFG40018.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754]
 gi|296886425|gb|EFH25354.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300885786|gb|EFK80993.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304342328|gb|EFM08220.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196225|gb|EFU26580.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139714|gb|EFW31583.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320142369|gb|EFW34183.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329314582|gb|AEB88995.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728640|gb|EGG65070.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329731448|gb|EGG67811.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 730

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAREMKERVQKLVGDQAEV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|227536350|ref|ZP_03966399.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243726|gb|EEI93741.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 1075

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 17/194 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AGSGKT  L    L LL  +      +L +T T  A  EM  R+L+++   ++  
Sbjct: 9   ILKASAGSGKTFSLAVHYLTLLFHHEYKYREILAVTFTNKATEEMKTRILDVLKGLANND 68

Query: 94  D----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                +     + K   +  N     +A+ +   IL       V TI  F + +++ F  
Sbjct: 69  PSPGTDNYRQLLLKAYPQYSNIELQDRAQKIYRRILHDYSHFSVSTIDGFVQKVIRGFAF 128

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED------ 203
           E  + + +++  E    K+ ++        + LD+  EL +   ++ +   D D      
Sbjct: 129 ELGLDAAYSL--EMNLDKVQDQLVNRL--DLELDDKPELVEWIVDLAKERIDNDKSWNYK 184

Query: 204 --IETLISDIISNR 215
             + +L  +I   R
Sbjct: 185 GELLSLTREIFKER 198


>gi|229083589|ref|ZP_04215918.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44]
 gi|228699721|gb|EEL52377.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44]
          Length = 745

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + ++ ++    +Q           + A AGSGKT +L  R+  LL      P  +L +T 
Sbjct: 10  KLLNGLN--PEQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 67

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 68  TNKAAREMRERIDTLVGPEAE--------------------------------------D 89

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++      I  +F I D      ++++  K 
Sbjct: 90  IWISTFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 134


>gi|330837148|ref|YP_004411789.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329749051|gb|AEC02407.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 808

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 40/181 (22%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +  +++ + E +L  + +    V A AGSGKT ++  ++   + A    P  +L +T 
Sbjct: 15  ELLAGLNEPQREAVL--ENSAPLLVLAGAGSGKTRVITTKIAWCIRALGIAPWKILAVTF 72

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RVL ++                                         P  
Sbjct: 73  TNKAAGEMRDRVLAMVPDA-------------------------------------NPQD 95

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             ++T H+F    +++      + S F I D+E S  L+  A        +    +++  
Sbjct: 96  FMIRTFHSFGAWFLRRHGELLGLNSGFTIYDDEDSLSLLASAYPEFKKKELSPYMKKIAA 155

Query: 191 A 191
           A
Sbjct: 156 A 156


>gi|313204216|ref|YP_004042873.1| uvrd/rep helicase [Paludibacter propionicigenes WB4]
 gi|312443532|gb|ADQ79888.1| UvrD/REP helicase [Paludibacter propionicigenes WB4]
          Length = 1086

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 12/210 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           A+AGSGKT+ L Q  + LL           +L +T T  A  EM  R+L+ + A S    
Sbjct: 7   ASAGSGKTYRLTQDYIHLLFDARRERTHRRILAVTFTNKATDEMKTRILKELLALSQGEK 66

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
               A +   +    ++   +KA+ +L  IL       + TI  F + +++ F  +  + 
Sbjct: 67  SDYRAGLIS-KDYPTDEGVNAKAKKILTGILHDYSSFSISTIDRFFQQVIRSFARDIGVH 125

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF----YEILEISNDEDIETLISD 210
             + +  E  +   +E++  +    +  D N++L +       E +E S   ++   I +
Sbjct: 126 GGYNL--ELDNTATLEQSVDNLFLDLSKDENKQLLQWLTAYAEERIEQSESWNMRNNIME 183

Query: 211 IISNRTALKLIFFFFSYLWRRKIIEKSLWS 240
           +   R   K  +   +    RK+ E+   +
Sbjct: 184 L--GREIFKESYQHKAEDTNRKLHEREFLT 211


>gi|294785780|ref|ZP_06751068.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27]
 gi|294487494|gb|EFG34856.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27]
          Length = 737

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           +   ++ ++  + E   AS    S  + A AGSGKT  +  R+  ++      P ++L +
Sbjct: 2   NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAV 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV E++   +                                      
Sbjct: 60  TFTNKAAKEMRERVEELVGDIAKAC----------------------------------- 84

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               + T H+F   +++ +  E    S+F I D +  K++++   K
Sbjct: 85  ---TISTFHSFGMRLLRMYAKEVEYNSNFTIYDTDDQKRIVKAILK 127


>gi|256369829|ref|YP_003107340.1| DNA helicase II [Brucella microti CCM 4915]
 gi|255999992|gb|ACU48391.1| DNA helicase II [Brucella microti CCM 4915]
          Length = 858

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 42/198 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+H E   L      ++           V A AG+GKT +L  R+  +L    A+PS +L
Sbjct: 37  QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T    AA EM  R+  ++                                        
Sbjct: 97  AVTFINKAAREMKERIGHLVGGAVE----------------------------------- 121

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    ++++     N+TS F I D +   +LI++     + +  LD+  
Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175

Query: 187 ELKKAFYEILEISNDEDI 204
              + F  +++   ++  
Sbjct: 176 WPARTFANMIDGWKNKGF 193


>gi|224541822|ref|ZP_03682361.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525245|gb|EEF94350.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1181

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 37/224 (16%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            + +    K +Q       ++  VSA AGSGKT ILV R++ L++  +      L LT T
Sbjct: 1   MMRMPKYNKEQQAAIDLRGKTILVSAPAGSGKTRILVARLISLIVNDHYSMDQFLVLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           KAA  EM  R               L+  + +      ++  +   +  +  +       
Sbjct: 61  KAAGNEMKQR---------------LNVSLHEEALADHDEETLRHIQEQIQLLPHAY--- 102

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN------ 185
            + T  +FC+ +++++     +   F +        + ++     L   + D +      
Sbjct: 103 -ITTFDSFCKTLLEKYGYLIGVMPGFKVNPSPD--LIKDQVLDQCLEKWVEDPDFKDYAY 159

Query: 186 --------EELKKAFYEILEISNDE-DIETLISDIISNRTALKL 220
                   ++LKK   +   I+N   D    +  +        L
Sbjct: 160 RHNTKNNFDDLKKTLIDFQNITNSFVDFHRFLDQVHERYYDFNL 203


>gi|157738272|ref|YP_001490956.1| putative recombination protein RecB [Arcobacter butzleri RM4018]
 gi|157700126|gb|ABV68286.1| ATP-dependent DNA helicase, UvrD/REP family [Arcobacter butzleri
           RM4018]
          Length = 910

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 29/192 (15%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + LLL  A P+ +L LT T  AA EMS R+ + +       
Sbjct: 5   LALKASAGSGKTFALTVRYICLLLLGAKPNEILTLTFTNKAANEMSERIYKTLLTLGDDE 64

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
             + + E         +K ++   +++LI        L + TI  F   I+++F     I
Sbjct: 65  AYLNAIE----NEVNLSKEEILGKKNILIKQFSNAN-LSIFTIDKFVNKILREFCGYIGI 119

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
           +  F I                         N++++K  YE L+  N++D +TLI     
Sbjct: 120 SDDFEI------------------------KNDDIEKLSYEFLKSLNEKDFQTLIDLSFY 155

Query: 214 NRTALKLIFFFF 225
            +     IF  F
Sbjct: 156 EKKKFNSIFELF 167


>gi|86151975|ref|ZP_01070188.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85841083|gb|EAQ58332.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 921

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 7/178 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+ GK   +    +        L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADE----EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           +S FA+++E     +    + +  +    +  ++  +E +  F E+ +   +   + L
Sbjct: 125 SSDFAMSEEKLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182


>gi|71082723|ref|YP_265442.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061836|gb|AAZ20839.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062]
          Length = 678

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 44/197 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCL 68
           +SE ++ ++  + E +L  D      + A AGSGKT +L  R+  ++      P+ +L +
Sbjct: 3   NSEYLNNLNNAQKEAVLYLD--GPLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM +RV  I+ +                                     E  
Sbjct: 61  TFTNKAAKEMQNRVSSILNS-------------------------------------EAI 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G   + T H+ C  ++++    A +TS+F I D +   +LI+   K    +  +D  +  
Sbjct: 84  GLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQVRLIKNICK----AENIDIKQLA 139

Query: 189 KKAFYEILEISNDEDIE 205
            K    I++   ++   
Sbjct: 140 PKFILSIIDRWKNKGFH 156


>gi|3024353|sp|P56255|PCRA_BACST RecName: Full=ATP-dependent DNA helicase pcrA
 gi|4930230|pdb|3PJR|A Chain A, Helicase Substrate Complex
 gi|15988533|pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
 gi|157833507|pdb|1PJR|A Chain A, Structure Of Dna Helicase
          Length = 724

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L    K +Q           + A AGSGKT +L  R+  L+   +  P  +L +T T  A
Sbjct: 9   LAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMRERVQSLLGGAAE--------------------------------------DVWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F+I D      +++   K 
Sbjct: 91  TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKE 131


>gi|297528689|ref|YP_003669964.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3]
 gi|297251941|gb|ADI25387.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3]
          Length = 724

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 44/188 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L    K +Q           + A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 9   LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMKERVQALLGGAAE--------------------------------------DVWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFY 193
           T H+ C  ++++      I  +F+I D      +I    K+ L    +D  + EL+    
Sbjct: 91  TFHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVI----KAILKDKNIDPKKFELRTILA 146

Query: 194 EILEISND 201
            I    ND
Sbjct: 147 TISGAKND 154


>gi|315636561|ref|ZP_07891797.1| UvrD/REP helicase [Arcobacter butzleri JV22]
 gi|315479210|gb|EFU69907.1| UvrD/REP helicase [Arcobacter butzleri JV22]
          Length = 911

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 29/192 (15%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + LLL  A P+ +L LT T  AA EMS R+ + +       
Sbjct: 5   LALKASAGSGKTFALTVRYICLLLLGAKPNEILTLTFTNKAANEMSERIYKTLLTLGDDE 64

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
             + + E         +K ++   +++LI        L + TI  F   I+++F     I
Sbjct: 65  AYLNAIE----NEVNLSKEEILGKKNILIKQFSNAN-LSIFTIDKFVNKILREFCGYIGI 119

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
           +  F I                         N++++K  YE L+  N++D +TLI     
Sbjct: 120 SDDFEI------------------------KNDDIEKLSYEFLKSLNEKDFQTLIDLSFY 155

Query: 214 NRTALKLIFFFF 225
            +     IF  F
Sbjct: 156 EKKKFNSIFELF 167


>gi|225856772|ref|YP_002738283.1| recombination helicase AddA [Streptococcus pneumoniae P1031]
 gi|225725942|gb|ACO21794.1| recombination helicase AddA [Streptococcus pneumoniae P1031]
          Length = 1216

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K++F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|225854627|ref|YP_002736139.1| recombination helicase AddA [Streptococcus pneumoniae JJA]
 gi|225723772|gb|ACO19625.1| recombination helicase AddA [Streptococcus pneumoniae JJA]
          Length = 1216

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K++F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|91762855|ref|ZP_01264820.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718657|gb|EAS85307.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002]
          Length = 678

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 44/196 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCL 68
           +SE ++ ++  + E +L  D      + A AGSGKT +L  R+  ++      P+ +L +
Sbjct: 3   NSEYLNNLNNAQKEAVLYLD--GPLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM +RV  I+ +                                     E  
Sbjct: 61  TFTNKAAKEMQNRVSSILNS-------------------------------------EAI 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G   + T H+ C  ++++    A +TS+F I D +   +LI+   K    +  +D  +  
Sbjct: 84  GLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQVRLIKNICK----AENIDIKQLA 139

Query: 189 KKAFYEILEISNDEDI 204
            K    I++   ++  
Sbjct: 140 PKFILSIIDRWKNKGF 155


>gi|270294147|ref|ZP_06200349.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275614|gb|EFA21474.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 784

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 39/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
             + I+ +++ +   +L +D    + V A AGSGKT +L  ++  LL     P  +L LT
Sbjct: 1   MPDYIEELNEGQRNAVLYND--GPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+   +                             +ARHL         
Sbjct: 59  FTNKAAREMKERIARQMGP--------------------------ERARHL--------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+    I+         TS F I D   SK LI    K  
Sbjct: 84  --WMGTFHSMFLRILHVEAGHIGFTSQFTIYDTADSKSLIRSIIKEM 128


>gi|296121632|ref|YP_003629410.1| exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776]
 gi|296013972|gb|ADG67211.1| Exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776]
          Length = 1226

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 97/232 (41%), Gaps = 40/232 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAA 76
           T  +    ++ + S  +SA AG GKT +L +R L  L         ++L+ +T T  AA 
Sbjct: 7   TPQQTRALTEKSVSIALSAGAGCGKTFVLTRRFLGYLKPGPEQYPLTSLVAITFTDKAAR 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV                  + +++   P ++D        +++L      ++ TI
Sbjct: 67  EMRDRVRATC--------------LQRVRECPPEEADH------WLSLLRDLDRARISTI 106

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC  I++   + + +   F   +   +  L+ ++ +++   +++++    +       
Sbjct: 107 HSFCGNILRSHAIASGLDPEFTTLEASVADSLLRQSIEASATRLLVNDQPAFRL------ 160

Query: 197 EISNDEDIETLISD---IISNRTALKLIFFF------FSYLWRRKIIEKSLW 239
            ++ D  IE L+     ++  R  + L  F        + +W R  ++++ W
Sbjct: 161 -LAVDYGIEKLLESSGILVRQRQLISLADFAEMTAEELAGIWHR-WLKETGW 210


>gi|322690920|ref|YP_004220490.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455776|dbj|BAJ66398.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 900

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A     ++  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 96  VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133


>gi|300950421|ref|ZP_07164344.1| DNA helicase II [Escherichia coli MS 116-1]
 gi|300450267|gb|EFK13887.1| DNA helicase II [Escherichia coli MS 116-1]
          Length = 689

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 43/166 (25%)

Query: 41  GSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
           GSGKT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++             
Sbjct: 1   GSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT----------- 49

Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159
                                      + GG+ V T H     +++   ++AN+   F I
Sbjct: 50  ---------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQI 82

Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
            D E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 83  LDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 124


>gi|319647077|ref|ZP_08001303.1| PcrA protein [Bacillus sp. BT1B_CT2]
 gi|317390901|gb|EFV71702.1| PcrA protein [Bacillus sp. BT1B_CT2]
          Length = 725

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 39/154 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
           +Q           + A AGSGKT +L  R+  L+      P  +L +T T  AA EM  R
Sbjct: 2   QQEAVKTTDGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKER 61

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  I+   +                                        + + T H+ C 
Sbjct: 62  VESILGPGA--------------------------------------DDIWISTFHSMCV 83

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            I+++      I  +F+I D      +I+   K 
Sbjct: 84  RILRRDIDRIGINRNFSILDTSDQLSVIKGILKE 117


>gi|57867385|ref|YP_189012.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A]
 gi|81673999|sp|Q5HN29|PCRA_STAEQ RecName: Full=ATP-dependent DNA helicase pcrA
 gi|57638043|gb|AAW54831.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A]
 gi|329734814|gb|EGG71119.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU028]
          Length = 729

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +    +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  ++   + +                                      + + T 
Sbjct: 67  EMKARVEHLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  KS
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKS 127


>gi|293189079|ref|ZP_06607806.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
 gi|292821993|gb|EFF80925.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
          Length = 944

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++   +       + A AGSGKT +L  R+  LL    A    +L +T T  AAAEM
Sbjct: 90  NDRQREAVTHAGSPLLILAGAGSGKTRVLTHRIAYLLATGRARAGEILAITFTNKAAAEM 149

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R   ++   +                                        + V T H+
Sbjct: 150 RERAGALVGDDAR--------------------------------------RMWVSTFHS 171

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  +++     A ++S F I D + S++LI+   K+ 
Sbjct: 172 ACVRLLRYKHEAAGLSSSFTIYDAQDSQRLIQMVLKAM 209


>gi|257420982|ref|ZP_05597972.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98]
 gi|257162806|gb|EEU92766.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98]
          Length = 752

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+     +P  +L +T T  AA EM
Sbjct: 12  NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                            + V T H+
Sbjct: 72  KERVNKLLETGGE--------------------------------------DVWVSTFHS 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +     +F I D  + K L++      
Sbjct: 94  MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131


>gi|254442638|ref|ZP_05056114.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198256946|gb|EDY81254.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 665

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 41/202 (20%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  ++   +Q  A +       + A AGSGKT  L  RV  LL     P  +L LT T 
Sbjct: 17  IDFRAELNDDQFAAVTAKPGPLLILAGAGSGKTRTLTYRVAYLLSQGVRPGEILLLTFTN 76

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV                 E+T ++G+                         
Sbjct: 77  KAAKEMLSRV----------------EELTTVEGR----------------------RFW 98

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H+    +++      ++  +F I D  +++ +++ A +S  ++   D         
Sbjct: 99  GGTFHSIGHRLLRMHGEAIDLPKNFTILDAGEAETVLKHAVESVNSAFFKDKTHPKPGPL 158

Query: 193 YEILEISND--EDIETLISDII 212
             I+ ++ +  E IE  I D  
Sbjct: 159 SSIISMARNTRESIERTILDFF 180


>gi|162448347|ref|YP_001610714.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So
           ce 56']
 gi|161158929|emb|CAN90234.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So
           ce 56']
          Length = 1254

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 23/175 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-----NAHPSTLLCLTHT 71
           ++   + + +  D   +  V A AG+GKT  LV R++ +L             ++ +T T
Sbjct: 14  LADEPARRRIRDDLRTTLVVEAAAGTGKTTALVSRIVAVLRRAPEEGGGTLDRIVAVTFT 73

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM  R+   I                      P      +AR  L   L      
Sbjct: 74  EKAAGEMKLRLRAEIERARS----------------DPGAGPAERAR--LDEALAHLEAA 115

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           ++ TIH+FC  +++++P+EA +   F +A  +Q++ L ++A  +     + D  E
Sbjct: 116 RIGTIHSFCADLLREWPVEARVDPLFQVAAADQAEALFDQAFDAWFQRTLNDPPE 170


>gi|86608842|ref|YP_477604.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557384|gb|ABD02341.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 787

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 26/179 (14%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           H+  +D ++ ++ + +          V A AGSGKT  L  R+  L+      P  +L +
Sbjct: 3   HASLLDALNPSQRQAVQ--HFCGPLLVVAGAGSGKTRALTHRIAYLVRHYRVDPGEILAV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET- 127
           T T  AA EM  R+ ++              E  +  G    + + ++A  L   +    
Sbjct: 61  TFTNKAAREMKERIEQLFAE----------QEAQEQFGIPLEELEPAQATRLKSAVYHRW 110

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEAN--ITS-------HFAIADEEQSKKLIEEAKKSTL 177
              L + T H+    I++   LE              HF+I DE  ++ L++E     L
Sbjct: 111 IKPLWIGTFHSLFAQILR---LEIEKYQDPKGRKWTRHFSIFDESDAQSLVKEIVTKQL 166


>gi|27468508|ref|NP_765145.1| ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|293367781|ref|ZP_06614430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|38604841|sp|Q8CRT9|PCRA_STAES RecName: Full=ATP-dependent DNA helicase pcrA
 gi|27316055|gb|AAO05189.1|AE016749_135 ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|291318120|gb|EFE58517.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726871|gb|EGG63329.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU144]
 gi|329734740|gb|EGG71046.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU045]
          Length = 729

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +    +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  ++   + +                                      + + T 
Sbjct: 67  EMKARVEHLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  KS
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKS 127


>gi|300771529|ref|ZP_07081404.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300761518|gb|EFK58339.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 1075

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 17/194 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AGSGKT  L    L LL  +      +L +T T  A  EM  R+L+++   ++  
Sbjct: 9   ILKASAGSGKTFSLAVHYLTLLFHHEYKYREILAVTFTNKATEEMKTRILDVLKGLANND 68

Query: 94  D----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                +     + K   +  +     +A+ +   IL       V TI  F + +++ F  
Sbjct: 69  PSPGTDNYRQLLLKAYPQYSHIELQERAQKIYRRILHDYSHFSVSTIDGFVQKVIRGFAF 128

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED------ 203
           E  + + +++  E    K+ ++        + LD+  EL +   ++ +   D D      
Sbjct: 129 ELGLDAAYSL--EMNLDKVQDQLVDRL--DVELDDKPELVEWIVDLAKERIDNDKSWNYK 184

Query: 204 --IETLISDIISNR 215
             + +L  +I   R
Sbjct: 185 GELLSLTREIFKER 198


>gi|149204193|ref|ZP_01881161.1| UvrD/REP helicase [Roseovarius sp. TM1035]
 gi|149142635|gb|EDM30680.1| UvrD/REP helicase [Roseovarius sp. TM1035]
          Length = 779

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +     EQ  A++       + A AG+GKT  L  R++ L+    A P  +L +T T  
Sbjct: 27  YLDDLNPEQRRAAETLDGPVLMLAGAGTGKTKALTTRIVHLMNTGRAGPGDILAVTFTNK 86

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   +                                      G   +
Sbjct: 87  AAREMKERVGRLLGQPAE-------------------------------------GMPWL 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  ++++     ++ S+F I D +   +L+++  ++
Sbjct: 110 GTFHSICVKLLRRHAELVDLKSNFTILDTDDQLRLLKQLVQA 151


>gi|317482225|ref|ZP_07941247.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916363|gb|EFV37763.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA]
          Length = 884

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A     ++  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 96  VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133


>gi|314963433|gb|EFT07533.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA1]
          Length = 810

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|189439490|ref|YP_001954571.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|312132895|ref|YP_004000234.1| uvrd2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688951|ref|YP_004208685.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|189427925|gb|ACD98073.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|311773868|gb|ADQ03356.1| UvrD2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460287|dbj|BAJ70907.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 900

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A     ++  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 96  VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133


>gi|270308367|ref|YP_003330425.1| UvrD/REP helicase [Dehalococcoides sp. VS]
 gi|270154259|gb|ACZ62097.1| UvrD/REP helicase [Dehalococcoides sp. VS]
          Length = 738

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + +  ++  + + +   +      + A  GSGKT ++  R+  L+ +   +P  ++ +T 
Sbjct: 3   DILTGLNPAQKQAVEVVE--GPVLILAGPGSGKTRVITHRIAYLIKIVGINPHRIMAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R                                      L +      G 
Sbjct: 61  TNKAAREMETR--------------------------------------LNLLAPSAAGR 82

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L + T HA C  I++Q  L   + + F I D++  + LI++A    
Sbjct: 83  LTMGTFHAICARILRQDGLPLGVPADFVIYDDDDQQSLIKQAMAEL 128


>gi|23465464|ref|NP_696067.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705]
 gi|239622010|ref|ZP_04665041.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|23326117|gb|AAN24703.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705]
 gi|239515201|gb|EEQ55068.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 881

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A     ++  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 14  ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 74  KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 96  VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133


>gi|73748886|ref|YP_308125.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1]
 gi|73660602|emb|CAI83209.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1]
          Length = 738

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + +  ++  + + + A +      + A  GSGKT ++  R+  L+ +    P  ++ +T 
Sbjct: 3   DILTGLNPAQKKAVEAVE--GPVLILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ ++  +                                        G 
Sbjct: 61  TNKAAREMETRLNQLAPSAV--------------------------------------GR 82

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L + T HA C  I++Q  L   + S F I D++  + LI++A    
Sbjct: 83  LTMGTFHAICARILRQDGLPLGVPSDFVIYDDDDQQSLIKQAMAEL 128


>gi|183221021|ref|YP_001839017.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911115|ref|YP_001962670.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775791|gb|ABZ94092.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779443|gb|ABZ97741.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 727

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 46/208 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ++L+     ++L          + A AGSGKT ++  R+  L+L  N +P+ +L +T T 
Sbjct: 1   MELVGLNSEQKLAVESVDGPLLILAGAGSGKTRVITYRIANLILNHNVYPNQILAVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R   ++   S+                                         
Sbjct: 61  KAAEEMRSRCRNLLPDGSYEP--------------------------------------F 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI-------MLDNN 185
           V+T H+ C  ++++      + S+F + D +  + LI+E  KS            + +  
Sbjct: 83  VRTFHSLCLYLLRREGKVLGLGSNFTVYDSDMQESLIKEILKSKEMDTKEFRPSSLANQF 142

Query: 186 EELKKAFYEILEISNDEDIETLISDIIS 213
            + K +F    E +  +  +     I S
Sbjct: 143 SQAKDSFLTAEEFAKKKADDAYTKTIAS 170


>gi|167645425|ref|YP_001683088.1| UvrD/REP helicase [Caulobacter sp. K31]
 gi|167347855|gb|ABZ70590.1| UvrD/REP helicase [Caulobacter sp. K31]
          Length = 804

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           + +     EQ  A +       V A AG+GKT +L  R+  +L    A P  LL +T T 
Sbjct: 42  NYLEGLNPEQRAAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVTFTN 101

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  II                                       E  G   
Sbjct: 102 KAAREMRERITHIIGD-------------------------------------EAEGLRW 124

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    I+++      + S + I D +  ++L+++     + +  +D+     +  
Sbjct: 125 LGTFHSVAAQILRRHAELVGLKSSYTIIDTDDQERLMKQ----LIEADNIDSKRWTPRIL 180

Query: 193 YEILEISNDEDI 204
             +++   +   
Sbjct: 181 AGLIDTWKNRGW 192


>gi|331266377|ref|YP_004326007.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit
           (contains helicase and exonuclease domains)
           [Streptococcus oralis Uo5]
 gi|326683049|emb|CBZ00666.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit
           (contains helicase and exonuclease domains)
           [Streptococcus oralis Uo5]
          Length = 1217

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                  KI  +    +D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEK------------------KISQQIQESNDVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            +  + +     +I  +F I  +E +   L  E       +     N+E    F  ++  
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLLLKNEVFHQVFEAHYQGENKE---NFSRLVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K +  S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSSPQKWLSNSFL 223


>gi|221231865|ref|YP_002511017.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae ATCC 700669]
 gi|251764564|sp|B8ZQ32|ADDA_STRPJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|220674325|emb|CAR68871.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae ATCC 700669]
          Length = 1216

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILNQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|172056503|ref|YP_001812963.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15]
 gi|171989024|gb|ACB59946.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15]
          Length = 741

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 44/189 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
           L+S    EQ  A         + A AGSGKT +L  RV  L+      P  +L +T T  
Sbjct: 8   LVSGLNPEQAKAVKHTDGPLLIMAGAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNK 67

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++   +                                        + V
Sbjct: 68  AAREMRDRISRLVGGVA--------------------------------------NDIWV 89

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  ++++   +     +F I D        + A K  L    LD  +   ++  
Sbjct: 90  STFHSMCVRMLRRDIEKIGYNRNFTILDSSDQ----QSALKLVLKEQNLDPKKWDPRSML 145

Query: 194 EILEISNDE 202
            I+    +E
Sbjct: 146 SIISSQKNE 154


>gi|221140358|ref|ZP_03564851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751778|gb|ADL65955.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus str. JKD6008]
          Length = 730

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 44/189 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAREMKERVQKLVGDQAEV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++      I  +F I D    K       K  L +  +D+ +   + F 
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKS----VVKDVLKNENIDSKKFEPRMFI 141

Query: 194 EILEISNDE 202
             +    +E
Sbjct: 142 GAISNLKNE 150


>gi|145589895|ref|YP_001156492.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048301|gb|ABP34928.1| ATP-dependent DNA helicase UvrD [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 787

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 51/198 (25%)

Query: 15  DLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           DL++    EQ  A            +SA + A AGSGKT +L  R+  L+      P  +
Sbjct: 4   DLLANLNPEQREAVTLPPVNPHGQAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPIGV 63

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  R+  ++                                       
Sbjct: 64  LAVTFTNKAAKEMMVRLSAMLPI------------------------------------- 86

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
               G+ + T H  C  +++    EA + S F I D +        A K  L  + +D+ 
Sbjct: 87  -NTRGMWIGTFHGLCNRLLRAHHKEAGLPSTFQILDTQDQLS----AIKRLLKGLKVDDE 141

Query: 186 EELKKAFYEILEISNDED 203
           +   K     +  + +  
Sbjct: 142 KYPPKQLQYFIAHAKERG 159


>gi|254556106|ref|YP_003062523.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
 gi|254045033|gb|ACT61826.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
          Length = 755

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 44/188 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q    D      + A AGSGKT +L  RV  L+     +P  +L +T T  A
Sbjct: 7   LAGMNDKQQEAVLDTEGPLLIMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++                                       E+   + V 
Sbjct: 67  AREMRERVGKLLG--------------------------------------ESAQEVWVS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFY 193
           T HA C  I+++   +      F IA   + + L     K  L    +D+ + + +    
Sbjct: 89  TFHALCVRILRRDIEQIGYNRAFTIAGTSEQRTL----VKRILTEQNIDSKKFDPRSILS 144

Query: 194 EILEISND 201
            I    ND
Sbjct: 145 AISNAKND 152


>gi|28377922|ref|NP_784814.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
 gi|308180103|ref|YP_003924231.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270756|emb|CAD63661.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
 gi|308045594|gb|ADN98137.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 755

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 44/188 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q    D      + A AGSGKT +L  RV  L+     +P  +L +T T  A
Sbjct: 7   LAGMNDKQQEAVLDTEGPLLIMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++                                       E+   + V 
Sbjct: 67  AREMRERVGKLLG--------------------------------------ESAQEVWVS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFY 193
           T HA C  I+++   +      F IA   + + L     K  L    +D+ + + +    
Sbjct: 89  TFHALCVRILRRDIEQIGYNRAFTIAGTSEQRTL----VKRILTEQNIDSKKFDPRSILS 144

Query: 194 EILEISND 201
            I    ND
Sbjct: 145 AISNAKND 152


>gi|270292732|ref|ZP_06198943.1| exonuclease RexA [Streptococcus sp. M143]
 gi|270278711|gb|EFA24557.1| exonuclease RexA [Streptococcus sp. M143]
          Length = 1217

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L        L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                  KI  +    SD+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEK------------------KISQQIQESSDVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIML-DNNEELKKAFYEILE 197
            +  + +     +I  +F I  +E +   L  E            +N E+  +       
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLILKNEVFHQVFEEHYQGENKEKFSRLVKNFAG 189

Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              DE            R  + K+  F  S    +K + +S  
Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLNESFL 223


>gi|237719544|ref|ZP_04550025.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4]
 gi|229451404|gb|EEO57195.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4]
          Length = 575

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71
           + I +    Q  A       + V A AGSGKT +L  ++  LL      +P  +L LT T
Sbjct: 4   NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                           M +AR+L           
Sbjct: 64  NKAAREMKERIARQVG--------------------------MERARYL----------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++        TS F I D   SK L+    K  
Sbjct: 87  WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131


>gi|160889899|ref|ZP_02070902.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492]
 gi|317478904|ref|ZP_07938052.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
 gi|156860891|gb|EDO54322.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492]
 gi|316904938|gb|EFV26744.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
          Length = 784

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 39/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
             + I+ +++ +   +L +D    + V A AGSGKT +L  ++  LL     P  +L LT
Sbjct: 1   MPDYIEELNEGQRNAVLYND--GPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+   +                             +ARHL         
Sbjct: 59  FTNKAAREMKERIARQMGP--------------------------ERARHL--------- 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+    I+         TS F I D   SK LI    K  
Sbjct: 84  --WMGTFHSMFLRILHVEAGHIGFTSQFTIYDTADSKSLIRSIIKEM 128


>gi|227545941|ref|ZP_03975990.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213575|gb|EEI81424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 910

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A     ++  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 24  ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 83

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +I   +                                        + 
Sbjct: 84  KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 105

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 106 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 143


>gi|323345276|ref|ZP_08085499.1| ATP-dependent helicase [Prevotella oralis ATCC 33269]
 gi|323093390|gb|EFZ35968.1| ATP-dependent helicase [Prevotella oralis ATCC 33269]
          Length = 1102

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 9   EHSETIDLIS---QTKSEQLLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANAH-PS 63
           E++  +DL     +T++   +  +  R   V  A+AG+GKT  L  R ++LL+ N     
Sbjct: 2   ENNSGLDLFHKGLETQTCSGVVQNRYRPITVYKASAGTGKTFTLATRYIKLLIDNPDSFR 61

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS-KARHLLI 122
            +L +T T  A  EM  R+L  +   +H   +        I+     +  ++ +A+  L 
Sbjct: 62  NILAVTFTNKATEEMKMRILSQLYGIAHHLPDSEEYLNKVIEITGATEEYIASQAKVALS 121

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            ++      +V+TI  F ++I++    E ++T++  I  E   +++ ++A  + +  ++ 
Sbjct: 122 NLVHNYSYFRVETIDTFFQSILRNLARELDLTANLRI--ELNDRQIEQQAVDTLIEELVP 179

Query: 183 DNNE 186
            + E
Sbjct: 180 ASKE 183


>gi|315077282|gb|EFT49344.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA2]
          Length = 810

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|314979801|gb|EFT23895.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA2]
 gi|315090029|gb|EFT62005.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA1]
          Length = 810

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|121604380|ref|YP_981709.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120593349|gb|ABM36788.1| ATP-dependent DNA helicase UvrD [Polaromonas naphthalenivorans CJ2]
          Length = 781

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 45/209 (21%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P   A + A AGSGKT +L  R+  LL      P  +L +T T  AA EM  R+  ++  
Sbjct: 4   PATHALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKAAKEMLTRLSAMLPI 63

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                    G+ + T H  C   ++   
Sbjct: 64  --------------------------------------NVRGMWIGTFHGLCNRFLRAHY 85

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE--T 206
             AN+ S F I D +     I+   K       +D+     K     +    ++ +    
Sbjct: 86  KLANLPSTFQILDTQDQLSAIKRLSKQF----GIDDERFPPKDLMRFIAGCKEDGLRAKD 141

Query: 207 LISDIISNRTALKLIFFFFSYLWRRKIIE 235
           + +   ++R  +++   +     R  +++
Sbjct: 142 VPAHDENSRKKVEIYDLYEQQCQREGVVD 170


>gi|86159793|ref|YP_466578.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776304|gb|ABC83141.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 671

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 54/164 (32%), Gaps = 38/164 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +DL +    ++           V A AGSGKT ++  RV  LL+    P  +L +T T 
Sbjct: 1   MLDLSTLNPPQREAVMTTEGPLLVLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +                                             + 
Sbjct: 61  KAAGEMRERVAALAGPPGV--------------------------------------DVF 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+F   ++QQ    A +   FAI D      L++   +  
Sbjct: 83  VSTFHSFGLWLLQQEHEAAGLPRRFAICDAGDQLALVKRCMREV 126


>gi|254462521|ref|ZP_05075937.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206679110|gb|EDZ43597.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 817

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +D ++  + E +          + A AG+GKT  L  R++ L+  A A P+ +L +T T
Sbjct: 29  YLDGLNPAQREAVETL--YGPVLMLAGAGTGKTKALTARIVHLMNAAKARPNEILAVTFT 86

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM +RV  ++                                          G  
Sbjct: 87  NKAAREMKNRVGGMLGQSIE-------------------------------------GMP 109

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  ++++      + S+F I D +   +L+++     L +  +D+     + 
Sbjct: 110 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LLRAESIDDKRWPARM 165

Query: 192 FYEILEISNDEDI 204
               ++   +  +
Sbjct: 166 LAGFIDGWKNRAL 178


>gi|289432882|ref|YP_003462755.1| UvrD/REP helicase [Dehalococcoides sp. GT]
 gi|288946602|gb|ADC74299.1| UvrD/REP helicase [Dehalococcoides sp. GT]
          Length = 738

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + +  ++  + + + A +      + A  GSGKT ++  R+  L+ +    P  ++ +T 
Sbjct: 3   DILTGLNPAQKKAVEAVE--GPVLILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ ++  +                                        G 
Sbjct: 61  TNKAAREMETRLNQLAPSAV--------------------------------------GR 82

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L + T HA C  I++Q  L   + S F I D++  + LI++A    
Sbjct: 83  LTMGTFHAICARILRQDGLPLGVPSDFVIYDDDDQQSLIKQAMAEL 128


>gi|260906166|ref|ZP_05914488.1| putative ATP-dependent DNA helicase II [Brevibacterium linens BL2]
          Length = 850

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 65/169 (38%), Gaps = 40/169 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
            S   +L++     Q  A   T S   + A AGSGKT +L +R+   L    AHP  +L 
Sbjct: 16  DSRAAELLTGLNPRQREAVAHTGSPLLIVAGAGSGKTTVLTRRIAYALATGRAHPGEVLA 75

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM+ RV  I+   S                                     
Sbjct: 76  ITFTNKAAKEMAERVRSIVGPASR------------------------------------ 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + V T H+ C  I+++      + S+F I D + +++L+ +  K  
Sbjct: 100 --AMWVSTFHSSCVRILRREAKVLGMKSNFTIYDSQDAQRLVSQILKEL 146


>gi|5542368|pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp
          Length = 167

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L    K +Q           + A AGSGKT +L  R+  L+   +  P  +L +T T  A
Sbjct: 9   LAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMRERVQSLLGGAAE--------------------------------------DVWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F+I D      +++   K 
Sbjct: 91  TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKE 131


>gi|153062|gb|AAA72091.1| helicase [Staphylococcus aureus]
 gi|742312|prf||2009360A helicase
          Length = 675

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++   +EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                      + +
Sbjct: 64  AAREMKERVQKLVGDQAEV--------------------------------------IWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|314969858|gb|EFT13956.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA1]
          Length = 810

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|220918612|ref|YP_002493916.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956466|gb|ACL66850.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 671

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 54/164 (32%), Gaps = 38/164 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +DL +    ++           V A AGSGKT ++  RV  LL+    P  +L +T T 
Sbjct: 1   MLDLSTLNPPQREAVMTTEGPLLVLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +                                             + 
Sbjct: 61  KAAGEMRERVAALAGPPGV--------------------------------------DVF 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+F   ++QQ    A +   FAI D      L++   +  
Sbjct: 83  VSTFHSFGLWLLQQEHEAAGLPRRFAICDAGDQLALVKRCMREV 126


>gi|327451777|gb|EGE98431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA2]
          Length = 810

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|313817909|gb|EFS55623.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA2]
          Length = 810

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|283778550|ref|YP_003369305.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283437003|gb|ADB15445.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 800

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 42/182 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           S  +D +  T +++           + A  GSGKT ++  RV  +L +      +L LT 
Sbjct: 20  SPLLDSL--TDAQRAAVCHIEGPLLILAGPGSGKTRVVTHRVAWMLASGIPARQILALTF 77

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  +    +                                        
Sbjct: 78  TNKAADEMRGRLERLAPRQA---------------------------------------- 97

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + + T H FC  +++ +     +  +F+I D + S+K+++ A       +   + + + +
Sbjct: 98  VWMGTFHRFCARMLRSYAELVGLRENFSIYDTDDSRKILQIALDEEGIDLTHTSPDAIAQ 157

Query: 191 AF 192
           A 
Sbjct: 158 AI 159


>gi|239916963|ref|YP_002956521.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
 gi|281414579|ref|ZP_06246321.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
 gi|239838170|gb|ACS29967.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
          Length = 858

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 51/157 (32%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +    +       + A AGSGKT +L  R+  LL    A P  +L +T T  AAAEM
Sbjct: 71  NPQQSAAVTHTGAPLLIVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNKAAAEM 130

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  +I                                        T   + + T H+
Sbjct: 131 RERVAGLIGP--------------------------------------TAQRMWISTFHS 152

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               +++       + S F I D   S +L+    K 
Sbjct: 153 SAVRLLRNEAANIGLKSTFTIYDSADSLRLVTTVAKQ 189


>gi|319957659|ref|YP_004168922.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319420063|gb|ADV47173.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 915

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 11/208 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             +SA+AGSGKT  L  R + LL      S++L  T T  AAAEM HRV+E +       
Sbjct: 7   LALSASAGSGKTFALSVRYVALLFLGESSSSILAATFTNKAAAEMRHRVVEALRRLDEAD 66

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K  G  P++  ++K   +L   L++P    + T+ +F  ++++   LE  +
Sbjct: 67  FAPFLGELAKQTGLSPDE-ILAKRPGVLRRFLDSPT--HIVTLDSFFVSVLKAGALEIGL 123

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
              F   +E      ++EA    L      + E +     E+        +E +   + S
Sbjct: 124 DPGFVTKEEASVG--LQEAFLEEL------DREGMLPVLVELAIQMERRRVEGMTESLAS 175

Query: 214 NRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 L+  F       + +E  + ++
Sbjct: 176 LYAQDPLLPPFPEGDGTLRGLEGEIEAL 203


>gi|170751333|ref|YP_001757593.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831]
 gi|170657855|gb|ACB26910.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831]
          Length = 797

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 43/195 (22%)

Query: 12  ETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           E+   +     EQ  A + T     V A AG+GKT +L  R+  L+    A P  +L +T
Sbjct: 30  ESAGYLEGLNPEQRRAVETTEGPVLVLAGAGTGKTRVLTTRIAHLIATGRARPFDILAVT 89

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM HR+  +I                                          G
Sbjct: 90  FTNKAAREMKHRIGALIGPAGE-------------------------------------G 112

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T HA    I+++      + S F I   +   +L+++     +A   +D      
Sbjct: 113 MPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VIADQNVDEKRWPA 168

Query: 190 KAFYEILEISNDEDI 204
           +A    ++   +  +
Sbjct: 169 RALSHAVDGWKNRGL 183


>gi|85703443|ref|ZP_01034547.1| DNA helicase II, putative [Roseovarius sp. 217]
 gi|85672371|gb|EAQ27228.1| DNA helicase II, putative [Roseovarius sp. 217]
          Length = 779

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +     EQ  A++       + A AG+GKT  L  R++ L+    A P  +L +T T  
Sbjct: 27  YLDDLNPEQRRAAETLDGPVLMLAGAGTGKTKALTTRIVHLMNTGRAGPGDILAVTFTNK 86

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   +                                      G   +
Sbjct: 87  AAREMKERVGRLLGQPAE-------------------------------------GMPWL 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  ++++     ++ S+F I D +   +L+++  ++
Sbjct: 110 GTFHSICVKLLRRHAELVDLKSNFTILDTDDQLRLLKQLVQA 151


>gi|123965572|ref|YP_001010653.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515]
 gi|123199938|gb|ABM71546.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515]
          Length = 802

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 28/225 (12%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q H+   + ++   ++    +       V A AGSGKT  L  R+  L+  +   P  +L
Sbjct: 3   QTHNFLFNSLN--NAQLKAVNHINGPLLVVAGAGSGKTKALTHRIANLIENHSVDPHNIL 60

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+  ++      +         K   +   ++++ + R        
Sbjct: 61  AVTFTNKAAKEMKARLQVLLAQELAFNQFGQPWATLKEFDQNQLRTNIDQER-------- 112

Query: 127 TPGGLKVQTIHAFCEAIMQ------QFPLEANITSHFAIADEEQSKKLIEEAKKSTLA-S 179
               L + T H+    +++      Q P     T  F+I DE  S+ L++E     ++  
Sbjct: 113 -LKDLWIGTFHSLFSRLLRYDIEKYQDPEGLRWTRQFSIYDETDSQTLVKEIISQDMSLD 171

Query: 180 IMLDNNEELKKAFYEI---------LEISNDEDIETLISDIISNR 215
               + +++K+A             LE   D   + +I+D     
Sbjct: 172 PKRFDPKKIKRAISNAKNQCFTAKELEEKADNHFDKVIADAYRRY 216


>gi|212550968|ref|YP_002309285.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549206|dbj|BAG83874.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 743

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 39/166 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            ++ +  +++++ E ++ +D    + V A AGSGKT ++  ++  LL     P ++L LT
Sbjct: 1   MADFLQQLNESQREAVIYND--GPSLVIAGAGSGKTRVITYKIAYLLKNGISPHSILALT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV EII                                           
Sbjct: 59  FTNKAAREMKVRVTEIIGENMTRL------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            L + T H+    I+++        S F I D++ SK LI+   K 
Sbjct: 83  -LWIGTFHSIFSKILRREASRIGFYSDFTIYDKQDSKNLIKNIIKE 127


>gi|116873192|ref|YP_849973.1| ATP-dependent DNA helicase PcrA [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742070|emb|CAK21194.1| ATP-dependent DNA helicase, PcrA family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 733

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L  R+  L+   + +P  +L +T 
Sbjct: 7   ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERSVNPYNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++   +                                        
Sbjct: 65  TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131


>gi|91201897|emb|CAJ74957.1| similar to ATP-dependent DNA helicase subunit AddA [Candidatus
           Kuenenia stuttgartiensis]
          Length = 1198

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 13/173 (7%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-------LLCLTHT 71
             K  +L  S+  ++  ++A AG+GKT ILVQR+L LLLA+    +       ++ LT T
Sbjct: 36  DRKIRELAVSEQHKNIVLTAGAGTGKTTILVQRILHLLLAHKSLQSEESPILKIIALTFT 95

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK------SDMSKARHLLITIL 125
           + AA+EM  R++E +         I   E +       +       +  S+     +  L
Sbjct: 96  EKAASEMKIRLMEELEKIVAAMKGICRPEESSQVNNFISDLQTTYHTTYSEIERRAVQSL 155

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
                  + TIH+F   I++ FP+E+ +   F + +    + L E+     L 
Sbjct: 156 ADMDKAMICTIHSFAAYILRMFPIESGVAPGFTVDEGSVFEDLFEKEWPDWLE 208


>gi|257459106|ref|ZP_05624225.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           gracilis RM3268]
 gi|257443491|gb|EEV18615.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           gracilis RM3268]
          Length = 479

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 16/175 (9%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L     + +L LT TK AAAEM  R++E       + 
Sbjct: 8   LALEASAGSGKTFNLAVRFIELVLKGEPINEILALTFTKKAAAEMKTRIVEKFQNLLIVR 67

Query: 94  DEIL--SAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           D  L  S E+ +I       +D  ++  R LL   L     L V T  AF    ++ F L
Sbjct: 68  DGALVPSPELAQICEDLNMSADEVLAAQRRLLPKFLN--ESLNVFTFDAFFAKALRSFAL 125

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
            + I   F   + ++S   +++  +  L++I  D          E+++  +D  +
Sbjct: 126 NSGIDPGF---ENDESILGVQQ--REFLSAICKDG-----AILREVVDYVSDSGM 170


>gi|225858940|ref|YP_002740450.1| recombination helicase AddA [Streptococcus pneumoniae 70585]
 gi|225720195|gb|ACO16049.1| recombination helicase AddA [Streptococcus pneumoniae 70585]
          Length = 1216

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVELKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|294787676|ref|ZP_06752920.1| DNA helicase II [Simonsiella muelleri ATCC 29453]
 gi|294483969|gb|EFG31652.1| DNA helicase II [Simonsiella muelleri ATCC 29453]
          Length = 735

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 49/230 (21%)

Query: 12  ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            T DL+     +Q  A   +P  SA + A AGSGKT +L  R+  LL   +A    ++ +
Sbjct: 6   NTPDLLRHLNPQQAQAVECNPKTSALILAGAGSGKTRVLTTRIAWLLQNQHAGVHNIMAV 65

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  ++                                          
Sbjct: 66  TFTNKAAKEMQTRLSAMLPY--------------------------------------NL 87

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             + + T H  C   ++    +A +   F I D      +I    K  L  + +D     
Sbjct: 88  RAMWLGTFHGICNRFLRLHYRDAGLPQTFQILDSSDQASII----KRLLKQLNIDEKSLA 143

Query: 189 KKAFYEILEISNDEDIETLISDI---ISNRTALKLIFFFFSYLWRRKIIE 235
            +     +    +  +   + D     + R  +K    +     R  +++
Sbjct: 144 PRTLQGFINAQKEAGLRANVLDAPDPFTQR-LIKCYAEYEQLCQREGVVD 192


>gi|282880688|ref|ZP_06289390.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305414|gb|EFA97472.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 1076

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 10/191 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA 88
           P+      A+AGSGKT  L    +++++ N +    +L +T T  A  EM  R+L  +  
Sbjct: 6   PSSLTISKASAGSGKTFKLATEYIKIVIDNPYAYRNILAVTFTNKATEEMKIRILSQLYG 65

Query: 89  WSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            +H LSD     +  K      +K    +A   L  +L      +V+TI +F +++++  
Sbjct: 66  IAHGLSDSESYLQEVKKALDLSDKQISERAEKALDLLLHNYSYFRVETIDSFFQSVLRNL 125

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDIE 205
             E ++T++  I  E   K++ E+A    +  +     ++L     + +E  I++D+   
Sbjct: 126 ARELDLTANLRI--ELNDKEIQEKAVDQLIEELH--PKQQLLGWILDFIEQKIADDKSWN 181

Query: 206 --TLISDIISN 214
              LI D  +N
Sbjct: 182 VIGLIKDFGNN 192


>gi|251799681|ref|YP_003014412.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2]
 gi|247547307|gb|ACT04326.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2]
          Length = 785

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           + +  ++  + + + A+D      + A AGSGKT +L  R+  L+      P ++L +T 
Sbjct: 9   QAVQKLNPPQRDAVQATD--GPLLIMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAITF 66

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  +I                                        T   
Sbjct: 67  TNKAAREMQARVAALIGP--------------------------------------TGQD 88

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + V T H+ C  I+++       TS+F+I D      +I    K  
Sbjct: 89  IWVSTFHSMCVRILRRDIDRIGFTSNFSILDSADQLSVIRNCMKEL 134


>gi|298208568|ref|YP_003716747.1| putative helicase [Croceibacter atlanticus HTCC2559]
 gi|83848491|gb|EAP86360.1| putative helicase [Croceibacter atlanticus HTCC2559]
          Length = 773

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 56/165 (33%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID +      Q         +  V A AGSGKT +L  R+  L+     P  +L LT T
Sbjct: 1   MIDYLKGLNDAQRAPVLQKDGAMIVIAGAGSGKTRVLTMRIAHLMKNGVDPFNILSLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ EI+ A    +                                     L
Sbjct: 61  NKAAKEMKKRISEIVGASEAKN-------------------------------------L 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I++    +    S+F I D + S+ LI    K  
Sbjct: 84  WMGTFHSIFAKILRFEADKLGYPSNFTIYDTQDSQSLIRAIIKEM 128


>gi|289424917|ref|ZP_06426696.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187]
 gi|289427700|ref|ZP_06429412.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165]
 gi|295131282|ref|YP_003581945.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137]
 gi|289154616|gb|EFD03302.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187]
 gi|289159191|gb|EFD07383.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165]
 gi|291375534|gb|ADD99388.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137]
 gi|313763127|gb|EFS34491.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA1]
 gi|313773164|gb|EFS39130.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL074PA1]
 gi|313793367|gb|EFS41425.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA1]
 gi|313800989|gb|EFS42257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA2]
 gi|313808729|gb|EFS47183.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA2]
 gi|313810354|gb|EFS48068.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA1]
 gi|313816467|gb|EFS54181.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA1]
 gi|313819821|gb|EFS57535.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA1]
 gi|313823311|gb|EFS61025.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA2]
 gi|313824786|gb|EFS62500.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA1]
 gi|313828273|gb|EFS65987.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA2]
 gi|313830207|gb|EFS67921.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL007PA1]
 gi|313832960|gb|EFS70674.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL056PA1]
 gi|313838057|gb|EFS75771.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL086PA1]
 gi|314917767|gb|EFS81598.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA1]
 gi|314919507|gb|EFS83338.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA3]
 gi|314925815|gb|EFS89646.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA3]
 gi|314930099|gb|EFS93930.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL067PA1]
 gi|314957100|gb|EFT01205.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA1]
 gi|314957690|gb|EFT01793.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA1]
 gi|314960758|gb|EFT04859.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA2]
 gi|314972985|gb|EFT17081.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA1]
 gi|314975621|gb|EFT19716.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL045PA1]
 gi|314984812|gb|EFT28904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA1]
 gi|314986165|gb|EFT30257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA2]
 gi|314988777|gb|EFT32868.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA3]
 gi|315079961|gb|EFT51937.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL078PA1]
 gi|315083289|gb|EFT55265.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA2]
 gi|315086938|gb|EFT58914.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA3]
 gi|315096648|gb|EFT68624.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL038PA1]
 gi|315097877|gb|EFT69853.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA2]
 gi|315100641|gb|EFT72617.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA1]
 gi|315109268|gb|EFT81244.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA2]
 gi|327325064|gb|EGE66870.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA3]
 gi|327325309|gb|EGE67114.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA2]
 gi|327443823|gb|EGE90477.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA1]
 gi|327449135|gb|EGE95789.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA2]
 gi|327449263|gb|EGE95917.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA2]
 gi|327451317|gb|EGE97971.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA3]
 gi|327451706|gb|EGE98360.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL092PA1]
 gi|328752262|gb|EGF65878.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA1]
 gi|328755353|gb|EGF68969.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA2]
 gi|328756392|gb|EGF70008.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL020PA1]
 gi|328761099|gb|EGF74648.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL099PA1]
          Length = 810

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|147669647|ref|YP_001214465.1| UvrD/REP helicase [Dehalococcoides sp. BAV1]
 gi|146270595|gb|ABQ17587.1| UvrD/REP helicase [Dehalococcoides sp. BAV1]
          Length = 738

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + +  ++  + + + A +      + A  GSGKT ++  R+  L+ +    P  ++ +T 
Sbjct: 3   DILTGLNPAQKKAVEAVE--GPVLILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ ++  +                                        G 
Sbjct: 61  TNKAAREMETRLNQLAPSAV--------------------------------------GR 82

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L + T HA C  I++Q  L   + S F I D++  + LI++A    
Sbjct: 83  LTMGTFHAICARILRQDGLPLGVPSDFVIYDDDDQQSLIKQAMAEL 128


>gi|229542654|ref|ZP_04431714.1| UvrD/REP helicase [Bacillus coagulans 36D1]
 gi|229327074|gb|EEN92749.1| UvrD/REP helicase [Bacillus coagulans 36D1]
          Length = 232

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 44/191 (23%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           ++    EQ  A         + A AGSGKT +L +RV  L++    +P  +L +T T  A
Sbjct: 9   LNGLNPEQKEAVKTTEGPLLILAGAGSGKTRVLTRRVAYLMVEKGVNPYNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  I+   +                                        + + 
Sbjct: 69  AREMKDRIAGIMGGAAE--------------------------------------EVWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++         +F+I D      +I    K+ L    LD  +   +A   
Sbjct: 91  TFHSMCVRILRRDIDRIGFNRNFSILDATDQLSVI----KNLLKEKNLDPKKFDPRAILG 146

Query: 195 ILEISNDEDIE 205
            +  + +E I+
Sbjct: 147 KISSAKNELID 157


>gi|314914443|gb|EFS78274.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA4]
          Length = 810

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|312887473|ref|ZP_07747072.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
 gi|311300113|gb|EFQ77183.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
          Length = 758

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 71/220 (32%), Gaps = 48/220 (21%)

Query: 14  IDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D +     S+Q           + A AGSGKT ++  RV  L+        +L LT T 
Sbjct: 1   MDYLKGLNPSQQQAVLQTEGPVMIIAGAGSGKTRVITYRVAHLVQKGVDSFNILVLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R++ +    +                                        + 
Sbjct: 61  KAAREMRERIMHVAGPDAK--------------------------------------NIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN------ 185
           + T H+    I++    +    S+F I D + SK ++    K   L   + + N      
Sbjct: 83  MGTFHSVFAKILRVEADKIGYPSNFTIYDTDDSKSVLRAIIKEMSLDDKLYNQNFVMSRI 142

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFF 225
              K       E   + DI+    D  S R  L  I+  +
Sbjct: 143 SASKNNLVSWQEYQQNPDIQA--DDFSSGRGQLGKIYENY 180


>gi|291459846|ref|ZP_06599236.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417636|gb|EFE91355.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 834

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 44/192 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL      EQL A         V A AGSGKT +L  R+  L+      P  +L +T T 
Sbjct: 53  DLEKILNKEQLSAVKQTEGPLLVLAGAGSGKTRVLTYRIAYLIENCGVAPWHILAITFTN 112

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV E++ A                                          + 
Sbjct: 113 KAAEEMRKRVDELLCAGG--------------------------------------AAVW 134

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+ C  I+++          F+I D E  + ++    +     + +D     ++A 
Sbjct: 135 VSTFHSMCVRILRRRIEAIGYGPDFSIYDAEDQRTVM----RQLFKELQIDPKSFRERAV 190

Query: 193 YEILEISNDEDI 204
              +  + +  I
Sbjct: 191 LSAISAAKNAGI 202


>gi|311029280|ref|ZP_07707370.1| ATP-dependent DNA helicase PcrA [Bacillus sp. m3-13]
          Length = 767

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
             ++ ++  + E +  +D      + A AGSGKT +L  R+  L+      P  +L +T 
Sbjct: 7   RLLEGLNPMQKEAVKKTD--GPLLIMAGAGSGKTKVLTHRIAYLMAEKQVAPWNILAITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV +++   +                                        
Sbjct: 65  TNKAAREMKERVEKLLGPAAE--------------------------------------D 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+ C  I+++      +  +F I D      +I+   K 
Sbjct: 87  IWISTFHSMCVRILRRDIDRIGMNRNFTILDTTDQLSVIKNILKD 131


>gi|125624253|ref|YP_001032736.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493061|emb|CAL98025.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071034|gb|ADJ60434.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 758

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 47/234 (20%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +  +++ +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLQGMNEKQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                                   A  L     +T 
Sbjct: 59  TFTNKAAKEMRER-----------------------------------ALSLTPRAQDTL 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D    K L+    K  L    LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM----KRILKEANLDPKKWE 135

Query: 189 KKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            K     +    ND   ET     I+ R   +++      ++++++ +      
Sbjct: 136 PKGLLNAISNAKNDLLDETAYEAQITARHPYEMVVARVYKIYQKELRKAESMDF 189


>gi|315498764|ref|YP_004087568.1| uvrd/rep helicase [Asticcacaulis excentricus CB 48]
 gi|315416776|gb|ADU13417.1| UvrD/REP helicase [Asticcacaulis excentricus CB 48]
          Length = 772

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 39/172 (22%)

Query: 6   SFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           S    S + D       EQ  A         V A AG+GKT +L  R+  +L    A P 
Sbjct: 14  SVNGASFSSDFFKGLNPEQADAVRSTEGPVLVLAGAGTGKTRVLTTRIAHILAQGLARPW 73

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +LC+T T  AA EM  R   ++   +     +                           
Sbjct: 74  EILCVTFTNKAAREMRERTTRLVGPSAEGLSNL--------------------------- 106

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                      T H+    ++++      + S F I D++   +L+++  ++
Sbjct: 107 ----------GTFHSIAAQMLRRHAELVGLKSSFNIIDDDDQTRLLKQIMEA 148


>gi|325955681|ref|YP_004239341.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
 gi|323438299|gb|ADX68763.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
          Length = 772

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + + Q    Q LA +       + A AGSGKT +L  R+  L+     P  +L LT T  
Sbjct: 3   NYLEQLNEPQRLAVEATEGPVMIIAGAGSGKTRVLTYRIAHLMNKGVDPFNILSLTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++ A    +                                     L +
Sbjct: 63  AAREMKERISSVVGASEAKN-------------------------------------LWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++         S+F I D++ +  ++ +     
Sbjct: 86  GTFHSVFARILRTEAPLLGYPSNFTIYDQQDAVSVMSKVINEL 128


>gi|229095725|ref|ZP_04226704.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29]
 gi|228687558|gb|EEL41457.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29]
          Length = 1195

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 35/189 (18%)

Query: 52  VLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
           +++ ++   +P     LL +T T AAA EM +R+ E +                K+   +
Sbjct: 1   MIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDE 45

Query: 109 PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           P    + K   LL           + TIH+FC  +++ +    ++   F IA++ +++ L
Sbjct: 46  PGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELL 98

Query: 169 IEEAKKSTLASIM-LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
            EE     L     +++N    +         +D+D++ +I         L L     ++
Sbjct: 99  KEEVLDDILEEEYGIEDNSIFFELVDRYTSDRSDDDLQRMI---------LALHTESRAH 149

Query: 228 LWRRKIIEK 236
               K ++K
Sbjct: 150 PNPEKWLDK 158


>gi|124514961|gb|EAY56472.1| putative exodeoxyribonuclease V, beta subunit [Leptospirillum
           rubarum]
          Length = 1101

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII---TAWSHL 92
           + A+AG+GKT  L    L ++L+   P  +L +T T+AAA ++  R+ +++     W   
Sbjct: 21  IEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAAQDVRERIQKLLEDVRQWRSG 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           S   +  ++            +   R  L   L       +QTIH+FC++++ Q      
Sbjct: 81  SKAEILPDLRAYLETLETDPLLLDMR--LREALVVFDRAPIQTIHSFCQSLLSQMSFLLG 138

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
             ++  +  E+Q   ++ E+      S+    +  L + F  + E 
Sbjct: 139 APANLVLVPEDQ--PVLYESSVRLWRSLFYGRDSRLAEFFLSVWED 182


>gi|5734491|emb|CAB52698.1| DNA helicase [Prochlorococcus marinus]
          Length = 519

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 17/173 (9%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           I  +     EQ  A D       V A AGSGKT  L  R+  L+      PS +L +T T
Sbjct: 5   ITFLDGLNKEQSKAVDHYEGPLLVVAGAGSGKTRALTHRIAHLISEYKVEPSEILAVTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++       +        KI  +   ++ + +         E    +
Sbjct: 65  NKAAREMKDRLEILLAQKLAKIEFGQPFSTLKISIQSELRTRIYR---------EVIKEI 115

Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
            + T HA    +++    ++  +  +  T HF+I DE+ +  LI+E     L 
Sbjct: 116 WIGTFHALFARLLRFDIEKYVDKEGLKWTRHFSIYDEKDALSLIKEIVTGDLQ 168


>gi|290967937|ref|ZP_06559487.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str.
           28L]
 gi|290782076|gb|EFD94654.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str.
           28L]
          Length = 738

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 45/163 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            +   + +            ++A AGSGKT +L  R+  LL     P  +L +T T  AA
Sbjct: 5   FLGLNERQAEAVRQTEGPLLITAGAGSGKTKVLTCRIAYLLEKGVAPYRILAITFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                       ET   + + T
Sbjct: 65  KEMRERVEKLVG--------------------------------------ETAKSMWLST 86

Query: 136 IHAFCEAIMQQFPLEA----NITSHFAIADEEQSKKLIEEAKK 174
            H+FC  +++    E       T +F I D      +++E  K
Sbjct: 87  FHSFCAKLLR---FEIDGHFGYTRNFTIYDSTDQLTVVKECVK 126


>gi|168492513|ref|ZP_02716656.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04]
 gi|183573318|gb|EDT93846.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04]
          Length = 1216

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TTDQIEAIYTSGQNILVSASAGSGKTFVMAERILNQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K +  S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSDSFL 223


>gi|313812190|gb|EFS49904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA1]
          Length = 810

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164


>gi|294671393|ref|ZP_06736243.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306941|gb|EFE48184.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 735

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|288554983|ref|YP_003426918.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
 gi|288546143|gb|ADC50026.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
          Length = 742

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           ++S    EQ  A+        + A AGSGKT +L  R+  LL   A  P  +L +T T  
Sbjct: 9   MLSGLNPEQRQATTHTEGPLLLMAGAGSGKTRVLTHRIAYLLREKAIAPWNVLAITFTNK 68

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   +                                        + +
Sbjct: 69  AAREMKDRVAKLVGPVAE--------------------------------------DIWI 90

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++         +F I D      +I++  K+
Sbjct: 91  STFHSMCVRILRRDIDRIGYNRNFTILDSSDQLSVIKQILKN 132


>gi|168486450|ref|ZP_02710958.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00]
 gi|183570541|gb|EDT91069.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00]
          Length = 1216

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVELKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + KS  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSKSFL 223


>gi|197123847|ref|YP_002135798.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196173696|gb|ACG74669.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 671

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 54/164 (32%), Gaps = 38/164 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +DL +    ++           V A AGSGKT ++  RV  LL+    P  +L +T T 
Sbjct: 1   MLDLSTLNPPQREAVMTTEGPLLVLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +                                             + 
Sbjct: 61  KAAGEMRERVAALAGPPGV--------------------------------------DVF 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+F   ++QQ    A +   FAI D      L++   +  
Sbjct: 83  VSTFHSFGLWLLQQEHEAAGLPRRFAICDAGDQLALVKRCMREV 126


>gi|325287669|ref|YP_004263459.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
 gi|324323123|gb|ADY30588.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
          Length = 773

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 56/163 (34%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + I+Q    Q            V A AGSGKT +L  R+  L+     P  +L LT T  
Sbjct: 3   EFIAQLNEAQKAPVLHTKGPLMVIAGAGSGKTRVLTYRIAYLIQQGVDPYNILSLTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +I  +    S                                     L +
Sbjct: 63  AAREMKVRIADIAGSAETKS-------------------------------------LWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    +++    +    ++F I D + S++LI    K  
Sbjct: 86  GTFHSIFAKLLRYEADKLGYPNNFTIYDTQDSQRLIASIIKEM 128


>gi|320334525|ref|YP_004171236.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211]
 gi|319755814|gb|ADV67571.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211]
          Length = 768

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 41/164 (25%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++Q    Q  A+D  T  A V A AGSGKT  LV R+  L+   + HP  +L +T T 
Sbjct: 31  DLLAQLNPNQAQAADHHTGPALVIAGAGSGKTRTLVYRIAHLIQHYDVHPGEILAVTFTN 90

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R                                          +++    L 
Sbjct: 91  KAAAEMRER---------------------------------------ASHLVQGANQLW 111

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++ +     +   F I D++    ++++   + 
Sbjct: 112 MSTFHSAGVRILRAYGEYIGLKRGFVIYDDDDQLDILKDLIGNV 155


>gi|309379347|emb|CBX22120.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 735

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|78186341|ref|YP_374384.1| DNA helicase II [Chlorobium luteolum DSM 273]
 gi|78166243|gb|ABB23341.1| ATP-dependent DNA helicase PcrA [Chlorobium luteolum DSM 273]
          Length = 735

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 39/164 (23%)

Query: 15  DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           D +      +Q   S       V A AGSGKT ++  R+  L+         +L LT T 
Sbjct: 3   DFLRDLSPVQQSAVSTTEGPVMVLAGAGSGKTRVITYRIAHLIGTKGVPSKNILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HRV  ++   +                                       GL 
Sbjct: 63  KAAGEMRHRVDTLLGPGAS-------------------------------------SGLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    +++ +      +  F+I D + SK LI ++    
Sbjct: 86  IGTFHSVFARLLRDYIERLGYSRSFSIFDSDDSKSLIRQSMTEL 129


>gi|295702475|ref|YP_003595550.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319]
 gi|294800134|gb|ADF37200.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319]
          Length = 749

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 58/210 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 17  LTGLNPQQQEAVKTTDGPLLLMAGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKA 76

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  I+   +                                        + + 
Sbjct: 77  AREMRERVSNIVGGVAE--------------------------------------DIWIS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++         +F I D             S + +I+ D N + KK    
Sbjct: 99  TFHSMCVRILRRDIDRIGFNRNFTILDSTDQL--------SVIKNILKDQNIDPKKF--- 147

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFF 224
                   D  +L+  I S +  LK+   F
Sbjct: 148 --------DPRSLLGSISSAKNELKVAEEF 169


>gi|254489019|ref|ZP_05102224.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101]
 gi|214045888|gb|EEB86526.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101]
          Length = 806

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  +   +   D      + A AG+GKT  L  R++ L+    A P+ +L +T T
Sbjct: 27  YLDGLNPAQRAAVEQMD--GPVLMLAGAGTGKTKALTARIVHLMNTGRARPNEILAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM +RV  ++                                          G  
Sbjct: 85  NKAAREMKNRVGGMLGQSIE-------------------------------------GMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  ++++      + S+F I D +   +L+++     + +  +D+     + 
Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LIKAEGIDDKRWPARM 163

Query: 192 FYEILEISNDEDI 204
              I++   +  +
Sbjct: 164 LAGIIDGWKNRAL 176


>gi|326383701|ref|ZP_08205386.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197465|gb|EGD54654.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 834

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 42/167 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++    ++           + A AGSGKT +L +R+  LL   +  P  +L +T 
Sbjct: 19  ELLDGLN--PQQRDAVLHTGSPLLIVAGAGSGKTAVLTRRIAFLLAERDVTPGQILAITF 76

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV++++   +                                        
Sbjct: 77  TNKAAAEMRERVIDLVGPRA--------------------------------------AY 98

Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + V T H+ C  I++ Q  L  N  S+F+I D + S++L+    +  
Sbjct: 99  MWVSTFHSTCVRILRAQSGLLGNRNSNFSIYDADDSRRLLGMVVRDL 145


>gi|309792836|ref|ZP_07687278.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
 gi|308225148|gb|EFO78934.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
          Length = 741

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 72/235 (30%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           +    ++  +   + A D      V A  GSGKT +L  RV  L+ A    P  +L +T 
Sbjct: 4   DLFTGLNPAQQRAVQAVD--GPVLVLAGPGSGKTRVLTHRVAYLIRALQVDPYQILAVTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R++ ++                                       E    
Sbjct: 62  TNKAAREMKQRLVHLVGE-------------------------------------EAAYA 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------LA 178
           L V T H+ C   +++  +       F I D +  ++L+    +              LA
Sbjct: 85  LTVGTFHSLCARFLRRDSVHLGRERDFVIYDGDDQERLMRRVVRELNLDEKKYAPRAMLA 144

Query: 179 SIMLDNNEELKKA--------------------FYEILEISNDEDIETLISDIIS 213
            I    NE +  A                    + ++L  SN  D + L+ +++ 
Sbjct: 145 RISSAKNELVGPAEYARLNRTYLDEIVARCYERYQQLLRQSNALDFDDLLVEMVH 199


>gi|229821506|ref|YP_002883032.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333]
 gi|229567419|gb|ACQ81270.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333]
          Length = 829

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 45/194 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            ++ ++  +   ++ S P     + A AGSGKT +L  R+  LL    A P  +L +T T
Sbjct: 58  LLEGLNPHQRAAVVHSGP--PLLIIAGAGSGKTRVLTHRIAYLLATRRARPGEILAITFT 115

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++   +                                        +
Sbjct: 116 NKAAAEMRERVEALVGPPAR--------------------------------------AM 137

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+ C  I+++      + S F+I D   S +L+    +     + LD      KA
Sbjct: 138 WVSTFHSACVRILRREHAVLGLRSSFSIYDAADSLRLMTLVCR----ELGLDPKRYPPKA 193

Query: 192 FYEILEISNDEDIE 205
           F   +    +E ++
Sbjct: 194 FIHRVSDLKNELVD 207


>gi|149013113|ref|ZP_01833959.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75]
 gi|147763058|gb|EDK70001.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75]
          Length = 1216

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|118474774|ref|YP_891588.1| putative recombination protein RecB [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414000|gb|ABK82420.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 921

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +R   + A+AGSGKT  L  R + L+L     + +L LT TK AA EM  R+++      
Sbjct: 4   SRYLALEASAGSGKTFALSVRFIALILQGNDIAKILALTFTKKAANEMKSRIIDAFCNLH 63

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             S +    E+ KI           + +++   +      LK+ T  +F   I++QF L 
Sbjct: 64  ESSKKNELNELEKILELSAVDILSLRDKYMGNFL---KNELKISTFDSFFTMILRQFSLN 120

Query: 151 ANITSHF 157
             I   F
Sbjct: 121 LGIMPDF 127


>gi|182684115|ref|YP_001835862.1| exonuclease RexA [Streptococcus pneumoniae CGSP14]
 gi|303255773|ref|ZP_07341815.1| exonuclease RexA [Streptococcus pneumoniae BS455]
 gi|251764565|sp|B2IPX3|ADDA_STRPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|182629449|gb|ACB90397.1| exonuclease RexA [Streptococcus pneumoniae CGSP14]
 gi|301801979|emb|CBW34707.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae INV200]
 gi|302597285|gb|EFL64389.1| exonuclease RexA [Streptococcus pneumoniae BS455]
          Length = 1216

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + KS  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSKSFL 223


>gi|229114675|ref|ZP_04244089.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3]
 gi|228668740|gb|EEL24168.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3]
          Length = 1195

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 35/189 (18%)

Query: 52  VLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
           +++ ++   +P     LL +T T AAA EM +R+ E +                K+   +
Sbjct: 1   MIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDE 45

Query: 109 PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           P    + K   LL           + TIH+FC  +++ +    ++   F IA++ +++ L
Sbjct: 46  PGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELL 98

Query: 169 IEEAKKSTLASIM-LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
            EE     L     +++N    +         +D+D++ +I         L L     ++
Sbjct: 99  KEEVLDDILEEEYGIEDNSIFFELVDRYTSDRSDDDLQRMI---------LALHTESRAH 149

Query: 228 LWRRKIIEK 236
               K ++K
Sbjct: 150 PNPEKWLDK 158


>gi|322387878|ref|ZP_08061485.1| exonuclease RexA [Streptococcus infantis ATCC 700779]
 gi|321141151|gb|EFX36649.1| exonuclease RexA [Streptococcus infantis ATCC 700779]
          Length = 1216

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 86/222 (38%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L        L   T T  AA E+ 
Sbjct: 26  TAEQIQAIYSSGQNILVSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELK 85

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                  KI  +     DM   +HL   + + P    + T+ +F
Sbjct: 86  ERLEK------------------KISQQIQETQDMELKKHLGRQLADLPNAA-IGTMDSF 126

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEI 198
            +  + +     ++  +F I + E  + L++         +   + + + ++ F +++  
Sbjct: 127 TQKFLAKHGYLIDLAPNFRILENESEQLLLK---NDVFRQVFESHYQSKEQEQFSQLV-- 181

Query: 199 SNDEDIETLISDIISNRTALKLIF-FFFSYLWRRKIIEKSLW 239
              ++      D    R  + +I+ F  S    +  +++S  
Sbjct: 182 ---KNFAGKSKDARGLRKQVYMIYDFLQSTSNPQAWLQESFL 220


>gi|301794254|emb|CBW36675.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae INV104]
          Length = 1216

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|254819357|ref|ZP_05224358.1| ATP-dependent DNA helicase PcrA [Mycobacterium intracellulare ATCC
           13950]
          Length = 780

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 52/216 (24%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-N 59
           ++    +  SE   L+     +Q  A     S   + A AGSGKT +L +R+  L+ A  
Sbjct: 3   VHATDTKLASEADQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLIAARG 62

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
                +L +T T  AAAEM  RV+ ++                            ++AR 
Sbjct: 63  VGVGQVLAITFTNKAAAEMRERVVRLVG---------------------------NRAR- 94

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS--- 175
                      + V T H+ C  I++        + S+F+I D + S++L++   +    
Sbjct: 95  ----------AMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRRLLQMIGRDMGL 144

Query: 176 --------TLASIMLDNNEELKKAFYEILEISNDED 203
                    LA+ + +   EL      + ++++D D
Sbjct: 145 DIKRYSPRLLANAISNLKNELIDPADAVSKLTDDSD 180


>gi|157163878|ref|YP_001466192.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           concisus 13826]
 gi|112801470|gb|EAT98814.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter concisus
           13826]
          Length = 939

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 10/180 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L   + + ++ LT TK AA EM  R+   I  +  L 
Sbjct: 5   LALKASAGSGKTFALSVRYIALVLRGENINEIVALTFTKKAANEMKERI---IATFLDLQ 61

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           ++    E    Q        + +    L   L+    LK+ T  AF   I+++F     I
Sbjct: 62  NKKGELEAVCAQLNISQDEAIKRRDERLGVFLQ--SELKIYTFDAFFSGILKKFSQNLGI 119

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
              +++ D      L + A K  +     D     + A   I+    +      ++    
Sbjct: 120 NPDYSVQDS-----LQDLAWKKFVKEASKDKKLLSELALMMIISSQKEASFSQTLAKFYE 174


>gi|303260559|ref|ZP_07346525.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293]
 gi|303262692|ref|ZP_07348631.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292]
 gi|303265228|ref|ZP_07351139.1| exonuclease RexA [Streptococcus pneumoniae BS397]
 gi|303266991|ref|ZP_07352865.1| exonuclease RexA [Streptococcus pneumoniae BS457]
 gi|303269649|ref|ZP_07355407.1| exonuclease RexA [Streptococcus pneumoniae BS458]
 gi|302636124|gb|EFL66620.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292]
 gi|302638272|gb|EFL68741.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293]
 gi|302640820|gb|EFL71209.1| exonuclease RexA [Streptococcus pneumoniae BS458]
 gi|302643471|gb|EFL73744.1| exonuclease RexA [Streptococcus pneumoniae BS457]
 gi|302645199|gb|EFL75435.1| exonuclease RexA [Streptococcus pneumoniae BS397]
          Length = 1216

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + KS  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSKSFL 223


>gi|237736785|ref|ZP_04567266.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC
           9817]
 gi|229420647|gb|EEO35694.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC
           9817]
          Length = 726

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 41/166 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++  + E   A+    +  + A AGSGKT  +  R+  ++      P  +L +T T
Sbjct: 3   ILDKLNDKQRE--AAAKIEGALLILAGAGSGKTRTITYRIAHMIDEIGISPYKILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   +                                        +
Sbjct: 61  NKAAKEMKERVESLVGEDAK--------------------------------------RV 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            + T H+F   +++ +       ++F I D +  K++ +   K  +
Sbjct: 83  MISTFHSFGLRLLRVYGDRLGYNANFTIYDTDDQKRVAKNIMKDLV 128


>gi|306829519|ref|ZP_07462709.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249]
 gi|304428605|gb|EFM31695.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249]
          Length = 1217

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 78/223 (34%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I      +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKIGQQIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLA-SIMLDNNEELKKAFYEILE 197
            +  + +     +I  +F I  +E +   L  E            +N E   +       
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLLLKNEVFHQVFEVHYQGENKENFSRLVKNFAG 189

Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              DE            R  + K+  F  S    +K + +S  
Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLNESFL 223


>gi|74317324|ref|YP_315064.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056819|gb|AAZ97259.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 702

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 36/168 (21%)

Query: 16  LISQTKSEQLLASDPT-------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            +S+   EQ  A +             V A AGSGKT++L  RV  L+   A P+ +L L
Sbjct: 20  YLSRLNPEQRRAVEHDVAGDACAGPLLVIAGAGSGKTNVLAHRVAHLVAHGADPAAILLL 79

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AA EM  RV  I+   +     +  A++                           
Sbjct: 80  TFSRRAADEMVRRVERILRQVAAGRPRLAGAKL--------------------------- 112

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 T H+    +++++     +   F I D E S  L+   +   
Sbjct: 113 --AWAGTFHSIGARLLREYAPRIGLDPAFTIHDREDSADLLNLVRHEL 158


>gi|319765417|ref|YP_004130918.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52]
 gi|317110283|gb|ADU92775.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52]
          Length = 724

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L    K +Q           + A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 9   LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMKERVQALLGGAAE--------------------------------------DVWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  ++++      I  +F+I D      +I+   K 
Sbjct: 91  TFHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKD 131


>gi|261418602|ref|YP_003252284.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61]
 gi|261375059|gb|ACX77802.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61]
          Length = 725

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L    K +Q           + A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 10  LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 70  AREMKERVQALLGGAAE--------------------------------------DVWIS 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  ++++      I  +F+I D      +I+   K 
Sbjct: 92  TFHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKD 132


>gi|116621025|ref|YP_823181.1| DNA helicase/exodeoxyribonuclease V subunit A [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224187|gb|ABJ82896.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 1045

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 35/185 (18%)

Query: 23  EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           +QL A D  +   +A V A  GSGKT +LV+   RL+ A+  P  +L +T T+ AA  M 
Sbjct: 9   DQLDAVDVEKRHLNACVVAGPGSGKTTVLVEYFRRLVEADVDPLRILAITFTEKAAGNMR 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++ +       +                       +AR              V T+H F
Sbjct: 69  KKLGQAFQDQPQI-----------------------RAR---------LERAWVSTVHGF 96

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++++  + A +   F + D  +S ++ +EA ++ + S+  D+ E ++     +    
Sbjct: 97  CARLLRENAVFAGVDPEFRVLDATESWRMQQEAMRTAIDSLFADHLEGMRGLIRGLSSFE 156

Query: 200 NDEDI 204
            ++ +
Sbjct: 157 FEQAV 161


>gi|15826976|ref|NP_301239.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN]
 gi|221229454|ref|YP_002502870.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
 gi|13632801|sp|Q9CD72|PCRA_MYCLE RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13092523|emb|CAC29661.1| putative ATP-dependent DNA helicase [Mycobacterium leprae]
 gi|219932561|emb|CAR70246.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 778

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 51/217 (23%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-N 59
           ++    +  SE   L+     +Q  A     S   + A AGSGKT +L +R+  L+ A +
Sbjct: 3   VHTTDAKPDSEVDRLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTTVLARRIAYLIAARS 62

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
              S +L +T T  AAAEM  RV  ++                                 
Sbjct: 63  VGVSQILAITFTNKAAAEMRERVARLVGD------------------------------- 91

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS--- 175
                  T   + V T H+ C  I++        + S+F+I D + S+ L++   +    
Sbjct: 92  ------HTGPSMWVSTFHSTCVRILRNQASLIGGLNSNFSIYDVDDSRSLLQMIGQDMGL 145

Query: 176 --------TLASIMLDNNEELKKAFYEILEISNDEDI 204
                    +A+ + +   EL  A   +  +S+D D 
Sbjct: 146 DIKRYSPRLMANAISNLKNELIDAESAVANLSSDTDD 182


>gi|227819648|ref|YP_002823619.1| DNA helicase [Sinorhizobium fredii NGR234]
 gi|227338647|gb|ACP22866.1| UvrD2 DNA helicase [Sinorhizobium fredii NGR234]
          Length = 688

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 55/169 (32%), Gaps = 37/169 (21%)

Query: 16  LISQTKSEQLLAS--------DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
            + +    Q  A         D      + A AGSGKT+ L  RV  L++  A P  +L 
Sbjct: 5   YLEKLNERQRSAVEHGVASGVDSGGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRILL 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T ++ AAAEM  RV  I +          S  +                          
Sbjct: 65  MTFSRRAAAEMGRRVERICSQVLGAKAGSFSDAL-------------------------- 98

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                  T H     ++++   E  I   F I D E S  L+   +   
Sbjct: 99  ---AWAGTFHGIGARLLREHATEIGIDPSFTIHDREDSADLMNIVRHEL 144


>gi|42524707|ref|NP_970087.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39576917|emb|CAE78146.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 762

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 37/169 (21%)

Query: 11  SETIDLI--SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLC 67
            + +D +  +   +++           + A AGSGKT +L  R+  ++         +LC
Sbjct: 1   MDVLDFVTKNLNPAQKDAVETLEGPLLILAGAGSGKTRVLTHRMANMIGQGVAASDEILC 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR+ +I++    +                                   
Sbjct: 61  VTFTNKAAKEMEHRIYKILSDMGAVVQT-------------------------------- 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              L + T H+FC  +++Q     +    F I D       I++   + 
Sbjct: 89  --QLWISTFHSFCVRVLRQHITLLDYKPFFGIYDSSDQLSQIKKVMTAL 135


>gi|225010263|ref|ZP_03700735.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
 gi|225005742|gb|EEG43692.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
          Length = 1043

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 8/178 (4%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
              +A+AGSGKT+ L +  L+L+LA   + +   +L LT T  A  EM  R+L  +  +S
Sbjct: 14  LIYNASAGSGKTYTLTKVYLKLILAPNAHNNFGHILALTFTNKAVNEMKERILTGLADFS 73

Query: 91  HLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                  S  +     K+     +    K+  +L+ +L      +V TI  F   +++ F
Sbjct: 74  LTPCPKKSEALFSDVVKELGCSREVLQKKSEKVLMQLLHNYAFFEVSTIDKFNHRLIRTF 133

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             +  +  +F +  +  +  ++ E   + +     D         + + +IS D+  +
Sbjct: 134 AKDLKLPQNFEV--QLDTDLVLTEGVNALIDRAGNDAALTDILVAFALEKISEDKSWD 189


>gi|326517054|dbj|BAJ96519.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 774

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 45/193 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           ++ E +  ++  + E    SD      + A  GSGKT  +V RVL LL     PS +L +
Sbjct: 299 KYYEYLHSLNDKQREA-SCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGISPSNILAM 357

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T AAA+EM  R+  ++                              A+ ++       
Sbjct: 358 TFTTAAASEMRDRIGAVVGKAV--------------------------AKEII------- 384

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------STLASIM 181
               + T H+FC  + +    +   TS F I    Q ++ I EA++         L   +
Sbjct: 385 ----ISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGDAV 440

Query: 182 LDNNEELKKAFYE 194
              + ++K +F +
Sbjct: 441 KQCDGDIKNSFKD 453


>gi|317125678|ref|YP_004099790.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
 gi|315589766|gb|ADU49063.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
          Length = 1186

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 20/171 (11%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S  + +  +DL   T  +  +     R   V A AGSGKT  +  RV+ L+      P  
Sbjct: 18  SALDIARALDLPPPTDEQAAVVEAGPRPLLVVAGAGSGKTETMAARVVWLVANGLVAPDQ 77

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AAAE+S R+ + +              + +     P + D   A  L    
Sbjct: 78  VLGLTFTRKAAAELSQRIAKRLRG------------LVRAGVWSPPEDDGGGAEVLG--- 122

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               G   V T H++   ++++  L   I   F +  E  + +L  EA   
Sbjct: 123 ----GTPTVSTYHSYAGRLVREHALRLGIEPEFRVLTEAGAWQLAAEAVSR 169


>gi|119356509|ref|YP_911153.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
           266]
 gi|119353858|gb|ABL64729.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
           266]
          Length = 734

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 40/161 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++  + + + A++      V A AGSGKT ++  R+  L+    A    +L LT T  AA
Sbjct: 8   LNDVQRQAVRATE--GPVMVLAGAGSGKTRVITYRIAWLIKNGYASAKNILALTFTNKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM HRV  ++   S                                      GGL + T
Sbjct: 66  GEMRHRVDVLLQQGS-------------------------------------AGGLWIGT 88

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+    +++          +F+I D + SK LI ++    
Sbjct: 89  FHSIFARLLRNDIHLLGYDRNFSIFDADDSKSLIRQSMGEL 129


>gi|86143639|ref|ZP_01062015.1| putative helicase [Leeuwenhoekiella blandensis MED217]
 gi|85829682|gb|EAQ48144.1| putative helicase [Leeuwenhoekiella blandensis MED217]
          Length = 1047

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEIITAWSH-- 91
           +A+AG+GKT  LV+  L +L  +++      +L +T T  A AEM  R+++ +  +S   
Sbjct: 11  NASAGAGKTFALVKNYLSILFKSSNDFKYRRILAITFTNKAVAEMKTRIIKNLQDFSSDA 70

Query: 92  -LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             + +       + +         +KA+ +L  I++      V TI  F   I++ F  +
Sbjct: 71  IFTQDNPMLSAVEEETGLERSEIQNKAKRILKHIVQDYASFDVVTIDNFTHRIIRTFAYD 130

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             I  +F +  E  ++ ++E+A  S +     D N       Y + +I ND+  +
Sbjct: 131 LKIPQNFEV--ELNTQDVLEQAVDSLIDKAGKDQNITRVLLDYALEKIDNDKSWD 183


>gi|242241668|ref|ZP_04796113.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus
           epidermidis W23144]
 gi|242234878|gb|EES37189.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus
           epidermidis W23144]
          Length = 295

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +    +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  ++   + +                                      + + T 
Sbjct: 67  EMKTRVEHLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  KS
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKS 127


>gi|116253019|ref|YP_768857.1| ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257667|emb|CAK08764.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 829

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ  A +       V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 57  DYLAGLNPEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 116

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 117 KAAREMKERIALLVGGAVE-------------------------------------GMPW 139

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++      + S F I D +   +LI++     + +  LD+     K F
Sbjct: 140 LGTFHSIGVKLLRRHGELVGLRSDFTILDTDDVVRLIKQ----IIQAEGLDDKRWPAKQF 195

Query: 193 YEILEISNDEDI 204
             +++   ++ +
Sbjct: 196 AGMIDTWKNKGL 207


>gi|42525604|ref|NP_970702.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405]
 gi|41815615|gb|AAS10583.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola
           ATCC 35405]
          Length = 1139

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 40/225 (17%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           +++      Q  A    +++ ++A AGSGKT +L  R +  ++        ++ LT T+ 
Sbjct: 7   NIMDSLNENQKNAVSVEKNSVIAAGAGSGKTKVLAARYVYFVVEKGVSVEKIIALTFTEK 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+   +    H + +                             +E     K+
Sbjct: 67  AAAEMHKRIYNELKKIDHPNAK---------------------------NAIEKFHLAKI 99

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  I +       I+  F I D  +S+KL           +  D   +      
Sbjct: 100 STIDSFCNRIARDACRNLGISPDFNI-DNTESEKLAYRIGLDFFLKMRSDKTMQF----- 153

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                  D  I+  +S +      L         +  +K +E  +
Sbjct: 154 ----FLGDNGIDDFVSGLFVK--LLSNYVLISRPIDFKKSLEDQI 192


>gi|91217344|ref|ZP_01254304.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755]
 gi|91184452|gb|EAS70835.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755]
          Length = 772

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 56/162 (34%), Gaps = 39/162 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D I Q    Q  A         V A AGSGKT +L  R+  L+        +L LT T  
Sbjct: 3   DYIKQLNEAQREAVLQKDGPMIVIAGAGSGKTRVLTYRIAYLMSEGVDSFNILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM +R+ +I+ A +                                        L +
Sbjct: 63  AAKEMKNRISKIVGAEAK--------------------------------------NLWM 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+    I++    +    S+F I D   S++LI    K 
Sbjct: 85  GTFHSVFAKILRFEGGKLGFPSNFTIYDSNDSQQLIRSIIKE 126


>gi|291166490|gb|EFE28536.1| ATP-dependent DNA helicase PcrA [Filifactor alocis ATCC 35896]
          Length = 725

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 39/161 (24%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           I++   EQL A      +  + A AGSGKT ++  R+  L+     PS +L LT T  AA
Sbjct: 3   IAELNKEQLDAVQTAGGNMLILAGAGSGKTRVITYRIAYLINHGVSPSNILALTFTNKAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+  I++                                      E      + T
Sbjct: 63  NEMKDRLSSILS--------------------------------------EEFSPSWIGT 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+ C  I++    + N    F I D      +I++  K  
Sbjct: 85  FHSICLRILRMNIEKVNYKKEFVIYDTYDQTAIIKDCMKQL 125


>gi|254517672|ref|ZP_05129728.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
 gi|226911421|gb|EEH96622.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
          Length = 749

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 58/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL S    EQ   A+       + A AGSGKT +L  R+  ++      P  +L +T T
Sbjct: 11  MDLKSLLNKEQYEGATTIEGQVLILAGAGSGKTRVLTHRMAHMIDDLGILPYKILAITFT 70

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  +I   +                                        +
Sbjct: 71  NKAAKEMKDRVKALIGERAE--------------------------------------DM 92

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+ C  I+++   +      F I D    K LI+E  K+ 
Sbjct: 93  WISTFHSTCVRILRREIEKLGYKKSFTIYDTSDQKTLIKECMKAL 137


>gi|87302003|ref|ZP_01084837.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701]
 gi|87283571|gb|EAQ75526.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701]
          Length = 797

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
           +  ++     Q  A D       V A AGSGKT  L  R+  L+      P  LL +T T
Sbjct: 1   MSFLAGLNDAQRRAVDHHNGPLLVVAGAGSGKTRALTHRIAHLIGHHGVDPHQLLAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++      S         + Q ++  ++ + +         E    L
Sbjct: 61  NKAAREMKERLELLLAQRLAGSQFGQPFSTLQPQQQRQLRNRIYR---------EVTKEL 111

Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTL 177
            + T HA    +++    ++     +  T  F+I DE  ++ L++E     L
Sbjct: 112 WIGTFHALFARLLRFDIDKYKDPEGLTWTRQFSIYDESDAQTLVKEIVTQEL 163


>gi|294497110|ref|YP_003560810.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551]
 gi|294347047|gb|ADE67376.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551]
          Length = 741

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 58/210 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q           + A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 9   LTGLNPQQQEAVKTTDGPLLLMAGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  I+   +                                        + + 
Sbjct: 69  AREMRERVASIVGGVAE--------------------------------------DIWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++         +F I D             S + +I+ D N + KK    
Sbjct: 91  TFHSMCVRILRRDIDRIGFNRNFTILDSTDQL--------SVIKNILKDQNIDPKKF--- 139

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFF 224
                   D  +L+  I S +  LK+   F
Sbjct: 140 --------DPRSLLGSISSAKNELKVAEEF 161


>gi|253575957|ref|ZP_04853291.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844751|gb|EES72765.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 661

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           E +  ++  + + + A++      + A AGSGKT +L  R+  L+    A P  +L +T 
Sbjct: 14  EAVSRLNPQQRQAVEATE--GPLLIMAGAGSGKTRVLTHRIAYLIATRKAPPWAILAITF 71

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++                                            
Sbjct: 72  TNKAAREMQDRVSRLVGGPEGRD------------------------------------- 94

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + V T H+ C  I+++       TS+F+I D      +I    K 
Sbjct: 95  IWVSTFHSMCVRILRRDIERIGFTSNFSILDSTDQLSVIRNCMKE 139


>gi|327332323|gb|EGE74059.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL097PA1]
          Length = 810

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+      Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+LI    + 
Sbjct: 122 VSTFHSAAVRILRTDIDGLGISRNFSIYDDTDAKRLITLVARD 164


>gi|323140468|ref|ZP_08075396.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT
           12067]
 gi|322415036|gb|EFY05827.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT
           12067]
          Length = 741

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 72/205 (35%), Gaps = 53/205 (25%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D +     EQL A         + A AGSGKT +L  R+  LL     P  +L +T T  
Sbjct: 3   DTMQGLNKEQLDAVQTINGPMLILAGAGSGKTKVLTCRIAHLLQQGVRPYRILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV  +  A +                                        + +
Sbjct: 63  AAAEMRERVDRMAGAAAR--------------------------------------DVWL 84

Query: 134 QTIHAFCEAIMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            T HAFC  +++    E        ++FAI D   SK LI++  K         N +E +
Sbjct: 85  FTFHAFCARLLR---YELENLNGYANNFAIYDTSDSKNLIKQVMKEM-------NLDEKR 134

Query: 190 KAFYEILEISNDEDIETLISDIISN 214
                I+   ++     L+ D  + 
Sbjct: 135 FPLPAIISHISNAKNALLLPDAYAR 159


>gi|312132140|ref|YP_003999480.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132]
 gi|311908686|gb|ADQ19127.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132]
          Length = 1028

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 37  SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           S++AGSGKT  L +  +  +L    + +   +L +T T  AA +M  R++  +   ++  
Sbjct: 11  SSSAGSGKTFTLTREYISTVLAAQEDDYFKRILAMTFTNEAAEQMKERIISTLKGLANQD 70

Query: 94  DEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               + +         +  D+++ +R +L  IL+      ++TI +F   ++Q F ++  
Sbjct: 71  GAAEAYKEQIQDATGLSDEDLARKSRKVLHEILQNYNDFAIKTIDSFVNQVIQSFAIDLK 130

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDIETLISD 210
           +  ++ I  +  +  LIEEA       +  D  EEL   + +  E  + N+     L  +
Sbjct: 131 LPYNYEIVLDTNT--LIEEAVNRLTDKVGQD--EELTLLYSDFAEGILENEGSWNNLREE 186

Query: 211 IIS 213
           II 
Sbjct: 187 IIK 189


>gi|88802827|ref|ZP_01118354.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
 gi|88781685|gb|EAR12863.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
          Length = 773

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 39/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            +  +D ++  + + +L  D      + A AGSGKT +L  R+  L+        +L LT
Sbjct: 1   MNSYLDSLNDAQKQAVLQKD--GPMIIIAGAGSGKTRVLTYRIAHLMKQGVDSFNILSLT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++      +                                    
Sbjct: 59  FTNKAAKEMKKRIASVVGDGEAKN------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            L + T H+    I++    +    S+F I D + S +LI    K  
Sbjct: 83  -LWMGTFHSVFARILRSEADKLGFPSNFTIYDTQDSVRLISAIIKEM 128


>gi|261400922|ref|ZP_05987047.1| DNA helicase II [Neisseria lactamica ATCC 23970]
 gi|269209154|gb|EEZ75609.1| DNA helicase II [Neisseria lactamica ATCC 23970]
          Length = 735

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|322375244|ref|ZP_08049757.1| exonuclease RexA [Streptococcus sp. C300]
 gi|321279507|gb|EFX56547.1| exonuclease RexA [Streptococcus sp. C300]
          Length = 562

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISQQIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIML-DNNEELKKAFYEILE 197
            +  + +     +I  +F I  +E +   L  E            +N E+  +       
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLLLKNEVFHQVFEDHYQGENKEKFSRLVKNFAG 189

Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              DE            R  + K+  F  S    +K + +S  
Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLNESFL 223


>gi|255066057|ref|ZP_05317912.1| DNA helicase II [Neisseria sicca ATCC 29256]
 gi|255049602|gb|EET45066.1| DNA helicase II [Neisseria sicca ATCC 29256]
          Length = 736

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSSDQLSLIKRLLKSL 134


>gi|148995044|ref|ZP_01823987.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68]
 gi|168488979|ref|ZP_02713178.1| recombination helicase AddA [Streptococcus pneumoniae SP195]
 gi|147926887|gb|EDK77936.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68]
 gi|183572407|gb|EDT92935.1| recombination helicase AddA [Streptococcus pneumoniae SP195]
 gi|332073494|gb|EGI83973.1| recombination helicase AddA [Streptococcus pneumoniae GA17570]
          Length = 1216

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGCQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K++F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|330427927|gb|AEC19261.1| DNA helicase II [Pusillimonas sp. T7-7]
          Length = 761

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 46/224 (20%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            ID ++    +Q   + P   A V A AGSGKT +L  R+  L+  + A P  L+ +T T
Sbjct: 1   MIDSLN--PQQQAAVTLPPAHALVLAGAGSGKTRVLTTRMAWLIQTSQASPFGLMAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             +A EM  R+  ++                                           G+
Sbjct: 59  NKSAREMLTRLSALLPI--------------------------------------NTRGM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H  C  +++    +A +   F I D          + K  L    +D+ +   + 
Sbjct: 81  WVGTFHGLCNRLLRAHHRDAGLPQTFQILDSADQLA----SIKRLLKGAGIDDEKFPPRD 136

Query: 192 FYEILEISNDEDIETLISDII-SNRTALKLIFFFFSYLWRRKII 234
               +  + ++       +I  ++R  L  I+  +     R+ +
Sbjct: 137 VQRFINGAKEDGQRPADVEIYDAHRRRLVDIYQLYQDQCEREGV 180


>gi|254670947|emb|CBA07597.1| DNA helicase II [Neisseria meningitidis alpha153]
          Length = 735

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|325954156|ref|YP_004237816.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
 gi|323436774|gb|ADX67238.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
          Length = 1033

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
             +A+AG+GKT+ LV+ +L +LL N+       +L +T T  AA EM  R+L  +   + 
Sbjct: 9   LYNASAGAGKTYTLVRNLLIILLQNSRDNWFEYILAITFTNKAANEMKERILLNLKELAD 68

Query: 92  LSDEILSA-EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            + +     +      K        KA  +L +IL       + TI  F   +++ F  +
Sbjct: 69  PTKKQNDYIQGIAKDTKLSIDEIQQKAHRILTSILHNYSKFSISTIDKFNLRLIKSFAQD 128

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
             ++  F +  E   K LIEEA     + I  D  EEL ++  ++   + +ED
Sbjct: 129 LGLSMSFDV--EMDVKTLIEEAVNLVYSKIGKD--EELTESILDMSLSNMEED 177


>gi|288802442|ref|ZP_06407881.1| putative UvrD/REP helicase domain protein [Prevotella
           melaninogenica D18]
 gi|288334970|gb|EFC73406.1| putative UvrD/REP helicase domain protein [Prevotella
           melaninogenica D18]
          Length = 1099

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 6/168 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    + L++ N      +L +T T  A  EM  R+L  +   +H L D 
Sbjct: 10  ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKTRILSQLYGIAHKLPDS 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E    +   P  +    A   L  +       +VQTI AF +++++    E N+T+
Sbjct: 70  QAYYEQVLRKTGFPELTIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 129

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  I   ++  +   +A    + S+  +  EE+     + ++ + ++D
Sbjct: 130 NLRIDLNDEQVE--AQAVDELINSL--EEGEEVLTWIRDYIDKNIEDD 173


>gi|229101824|ref|ZP_04232539.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28]
 gi|228681617|gb|EEL35779.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28]
          Length = 1195

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 35/189 (18%)

Query: 52  VLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
           +++ ++   +P     LL +T T AAA EM +R+ E +                K+   +
Sbjct: 1   MIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDE 45

Query: 109 PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           P    + K   LL           + TIH+FC  +++ +    ++   F IA++ +++ L
Sbjct: 46  PGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELL 98

Query: 169 IEEAKKSTLASIM-LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
            EE     L     +++N    +         +D+D++ +I         L L     ++
Sbjct: 99  KEEVLDDILEEEYGIEDNSIFFELVDRYTSDRSDDDLQRMI---------LALHTESRAH 149

Query: 228 LWRRKIIEK 236
               K ++K
Sbjct: 150 PNPEKWLDK 158


>gi|261379427|ref|ZP_05984000.1| DNA helicase II [Neisseria subflava NJ9703]
 gi|284797877|gb|EFC53224.1| DNA helicase II [Neisseria subflava NJ9703]
          Length = 735

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|325143147|gb|EGC65493.1| DNA helicase II [Neisseria meningitidis 961-5945]
 gi|325197521|gb|ADY92977.1| DNA helicase II [Neisseria meningitidis G2136]
          Length = 735

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|320527942|ref|ZP_08029108.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei
           F0204]
 gi|320131568|gb|EFW24132.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei
           F0204]
          Length = 743

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 39/163 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            ID+ S  ++++       +   + A AGSGKT +L  R++ L+   +  P+ +L +T T
Sbjct: 19  MIDINSLNENQKDAVLSKEKYLRIIAGAGSGKTRVLTMRIVHLIEDEDVWPTKILAITFT 78

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++ + +                                         
Sbjct: 79  NKAANEMKERVRNMLASQTSAP-------------------------------------- 100

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            V TIH+ C  I+++  +      +F I D E  K +++EA K
Sbjct: 101 WVSTIHSLCVRILREDIIAMGYPRNFTIMDTEDQKSVLKEAYK 143


>gi|56418810|ref|YP_146128.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
 gi|56378652|dbj|BAD74560.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 724

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L    K +Q           + A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 9   LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMKERVQALLGGAAE--------------------------------------DVWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  ++++      I  +F+I D      +I+   K 
Sbjct: 91  TFHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKD 131


>gi|325294300|ref|YP_004280814.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064748|gb|ADY72755.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 705

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 85/245 (34%), Gaps = 71/245 (28%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L+     +Q  A         + A AGSGKT ++  ++  ++      P  +L +T T  
Sbjct: 4   LLKGLNPQQKKAVTYFDSPLLILAGAGSGKTRVITYKIAYMIEKLRYKPERILAVTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   + +                                        V
Sbjct: 64  AAKEMKERVEKLVGNSAPVL---------------------------------------V 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI-- 180
            T H+FC  +++   +      +F I D +  K+L+ E  +             +AS+  
Sbjct: 85  STFHSFCVRLLRTHSVRVGYQPNFLILDTDDKKRLVREIIRDMNLDSELYNPSAIASVIS 144

Query: 181 --------------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIFF 223
                           D  +++ + + + L+ +N  D + L+    +++ +    +    
Sbjct: 145 NIKNGLYSPESMTTYYDRIKDIFEIYNKRLKENNAFDFDDLLIYGRELLKSEELQRKYSD 204

Query: 224 FFSYL 228
           FF Y+
Sbjct: 205 FFQYV 209


>gi|322376656|ref|ZP_08051149.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334]
 gi|321282463|gb|EFX59470.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334]
          Length = 1216

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                  KI  +    +D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEK------------------KISQQIQETNDVELKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L++         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|255262981|ref|ZP_05342323.1| DNA helicase II [Thalassiobium sp. R2A62]
 gi|255105316|gb|EET47990.1| DNA helicase II [Thalassiobium sp. R2A62]
          Length = 797

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  ++ ++  + E + A        + A AG+GKT  L  R++ L+    A P+ +L +T
Sbjct: 27  APYLNDLNPAQREAVEAL--KGPVLMLAGAGTGKTKALTSRIVHLMSTGNARPNEILAVT 84

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++                                          G
Sbjct: 85  FTNKAAREMKIRVGRMLGETVE-------------------------------------G 107

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T HA C  ++++      + S+F I D +   +L+++     +A+  +D+     
Sbjct: 108 MPWLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LVAAENIDDKRWPA 163

Query: 190 KAFYEILEISNDEDI 204
           +    I++   +   
Sbjct: 164 RMLAGIIDSWKNRAW 178


>gi|306825212|ref|ZP_07458554.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432648|gb|EFM35622.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 1217

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TTEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                  KI  +    +D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEK------------------KISQQIQETNDVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197
            +  + +     +I  +F I  +E +   L  E       +     N+E    F  ++  
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLILKNEVFHQVFEAHYQGENKE---NFSRLVKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSSPQKWLNESFL 223


>gi|317495222|ref|ZP_07953592.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424]
 gi|316914644|gb|EFV36120.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424]
          Length = 728

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++L+      QL A      +  V A AGSGKT +L  R+  L+   N   S +L +T T
Sbjct: 1   MELVQNMNENQLKAILKTQGAVMVIAGAGSGKTRVLTNRIAYLIAEKNVLESNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                       ET   +
Sbjct: 61  NKAAKEMKERIYSLVG--------------------------------------ETSKYI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+ C  I++Q         +F I D  + K +I+   K  
Sbjct: 83  WINTFHSMCVRILRQHIDLLGYNKNFTILDISEQKTIIKNIVKEL 127


>gi|297544110|ref|YP_003676412.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841885|gb|ADH60401.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 711

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 55/162 (33%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++           + A AGSGKT +L  R+  L+      PS +L +T T  A
Sbjct: 5   LNNLNDKQKEAVMTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV E++                                          G L V 
Sbjct: 65  AEEMKTRVEELLGYI---------------------------------------GDLWVS 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I+++   +     +F I D    K LI+E  K  
Sbjct: 86  TFHSASVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127


>gi|254412445|ref|ZP_05026219.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180755|gb|EDX75745.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 1139

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 17/178 (9%)

Query: 8   QEHSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
              +++ D ++     Q  A +       V A AGSGKT  L  R+  L+L +   P  +
Sbjct: 4   LAMTQSTDFLTHLNPSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIANLILTHKVAPENI 63

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  R+  +      +       E+     +       S+     I   
Sbjct: 64  LAVTFTNKAAREMKSRIETLFAQQLAVQTRGQRLEL---LPELEQTQLRSRVYKKYIK-- 118

Query: 126 ETPGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTL 177
                L + T H+    I++    ++  E       +F+I DE  ++ L++      L
Sbjct: 119 ----PLWIGTFHSLFARILRYDINKYTDEKGRQWKRNFSIFDESDAQTLVKTIVTKQL 172


>gi|325690487|gb|EGD32490.1| exonuclease RexA [Streptococcus sanguinis SK115]
          Length = 1224

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L       L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVRQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   ++   + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEAKSPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + +  ++     +  +F I     +   L  E             ++ L   F  +++ 
Sbjct: 130 TQKVFSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDCYYASEHQAL---FSRLVKN 186

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +       D+   R  + ++  F  S    ++ +E++  
Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|307244600|ref|ZP_07526704.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
           stomatis DSM 17678]
 gi|306491981|gb|EFM64030.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
           stomatis DSM 17678]
          Length = 787

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 45/190 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           ID ++  + + +  ++      + A AGSGKT +L  R+  L+      P+ +L +T T 
Sbjct: 3   IDDLNPAQRQAVERTE--GPVLILAGAGSGKTKVLTTRIAYLVEDKQVMPANILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  II                                       E    + 
Sbjct: 61  KAANEMRERVENIIG--------------------------------------ENSRDMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I+++   +      F I D      L+++     L  + LD+ +   K+ 
Sbjct: 83  ISTFHSCCVRILRKDINKIGYNRSFVIYDASDQLTLVKDC----LKELNLDDKKFEPKSI 138

Query: 193 YEILEISNDE 202
              +  + D+
Sbjct: 139 ISYISSAKDK 148


>gi|302392793|ref|YP_003828613.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
 gi|302204870|gb|ADL13548.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
          Length = 707

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 41/169 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            E +D ++    ++           V A AGSGKT +L  R+  L+   N  P  LL +T
Sbjct: 1   MEILDGLN--PQQKKAVKHKDGPLLVLAGAGSGKTMVLTHRIAYLIQQCNVEPYNLLAVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ ++I   S                                       
Sbjct: 59  FTNKAAEEMRERIEKLIAQDSE-------------------------------------- 80

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            + + T H+    I+++   +     +F I D    + LI++  K+ L 
Sbjct: 81  DIWMSTFHSIAVRILRREINKLGYDRNFTIYDTTDQQALIKDIIKNQLD 129


>gi|209550144|ref|YP_002282061.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535900|gb|ACI55835.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 825

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    EQ  A +       V A AG+GKT +L  R+  +L    A PS +L +T T 
Sbjct: 53  DYLAGLNPEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 112

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                          G   
Sbjct: 113 KAAREMKERIALLVGGAVE-------------------------------------GMPW 135

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    ++++      + S F I D +   +LI++     + +  LD+     K F
Sbjct: 136 LGTFHSIGVKLLRRHGELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 191

Query: 193 YEILEISNDEDI 204
             +++   ++ +
Sbjct: 192 AGMIDTWKNKGL 203


>gi|307706581|ref|ZP_07643388.1| recombination helicase AddA [Streptococcus mitis SK321]
 gi|307618036|gb|EFN97196.1| recombination helicase AddA [Streptococcus mitis SK321]
          Length = 1216

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 27/221 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D +                   + +  L   L       + T+ +F
Sbjct: 89  ERLEKKISQQIQETDGV-------------------ELKQHLGRQLADLPNAAIGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            +  + +     +I  +F I  ++ +   L  E       +      +E       +   
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNQSEQLLLKNEVFHEVFEAHYQGKQKETFSHL--LKNF 187

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
           +     E  +          K+  F  S    +K + +S  
Sbjct: 188 AGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|298369602|ref|ZP_06980919.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282159|gb|EFI23647.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314]
          Length = 735

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|254510735|ref|ZP_05122802.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221534446|gb|EEE37434.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 837

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            ++     Q  A +       + A AG+GKT  L  R+  LL ++    + +L +T T  
Sbjct: 27  YLNDLNPAQREAVERLEGPVLMLAGAGTGKTKALTARITHLLRSHRVRENEILAVTFTNK 86

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   +                                      G   +
Sbjct: 87  AAREMKERVGRMLGRPAE-------------------------------------GMPWL 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T HA C  ++++      + S+F I D +  K+L+++  +    +  +D+     +   
Sbjct: 110 GTFHAICVKLLRRHAELVGLKSNFTILDTDDQKRLLKQLTQ----AANIDDKRWPARMLA 165

Query: 194 EILEISNDEDI 204
            I++   +  +
Sbjct: 166 GIIDDWKNRAL 176


>gi|327482104|gb|AEA85414.1| exodeoxyribonuclease V beta chain [Pseudomonas stutzeri DSM 4166]
          Length = 1227

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 17/198 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    +RL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSRLIEASAGTGKTFTIALLYVRLVLGHGGDAAFKQALTPPQILVVTFTDAATQELRDRI 74

Query: 83  LEIITAWS---HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
              +   +      DE     + K++   P     + AR L +   E      V TIH +
Sbjct: 75  RARLNEAAQCFQAPDERHDPLLVKLRNGYPADQWPACARRLQL-ASEWMDEAAVSTIHGW 133

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++++   ++   S F    E   ++L++E  +            E+ +   +     
Sbjct: 134 CYRMLREHAFDSG--SLFTQTLETDQRELLDEVVRDYWRQQFYGLPPEVARVVTD--SFK 189

Query: 200 NDEDIETLISDIISNRTA 217
           +  ++   ++ ++S   A
Sbjct: 190 SPTELREALTPLLSRSDA 207


>gi|307565702|ref|ZP_07628171.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A]
 gi|307345528|gb|EFN90896.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A]
          Length = 845

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 57/160 (35%), Gaps = 38/160 (23%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L+S+    Q  A +     + V A AGSGKT +L  ++  LL +   P  +L LT T  A
Sbjct: 8   LLSELNPHQREAVEYCDGPSLVVAGAGSGKTRVLTYKIAYLLESGLKPWNILALTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +I                                             + + 
Sbjct: 68  AREMKDRIAKITNQ-------------------------------------SDANRIYMG 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+    I+++        S F I DE  S+ L++   K
Sbjct: 91  TFHSIFSRILRKESQYIGYNSSFTIYDESDSRSLLKNIIK 130


>gi|45657496|ref|YP_001582.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600735|gb|AAS70219.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 732

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 77/230 (33%), Gaps = 55/230 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            +S    EQ  A         + A AGSGKT ++  R+  LL+ +     +  +T T  A
Sbjct: 5   FLSDLNEEQKKAVLQVNGPVLILAGAGSGKTRVITHRIANLLINHG-IDRICAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +I+                                         P  ++++
Sbjct: 64  AAEMVERVKKIVPFL--------------------------------------PANVQIK 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS-----------TLASIMLD 183
           T H+ C  I+++        + F I D    + L+++  K            TL + +  
Sbjct: 86  TFHSLCLYILRREASFFGFDNGFTIYDTTLQESLLKQVIKDLSLDPKFYKPSTLGNYISG 145

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIIS---NRTALKLIFFFFSYLWR 230
             +++       LE     D    +S I      R      F F   +W+
Sbjct: 146 LKDKMLSP-ESYLEKEGRNDFSKAVSAIYKEYEKRKDANYAFDFGDLIWK 194


>gi|325145300|gb|EGC67578.1| DNA helicase II [Neisseria meningitidis M01-240013]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|189218921|ref|YP_001939562.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum
           V4]
 gi|189185779|gb|ACD82964.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum
           V4]
          Length = 636

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 38/160 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   + ++   + P     V A AGSGKT  L  RV  L+    +P  +L  T T  AA 
Sbjct: 6   VELNEEQKKAVTAPLGPILVIAGAGSGKTRTLTYRVAYLIEKGINPGRILLATFTNKAAR 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM +RV  ++   +                                        +   T 
Sbjct: 66  EMLNRVDRLVNTDT--------------------------------------SQIWGGTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H  C  I++          +F I D E S +L+    +  
Sbjct: 88  HHLCHKILRNHAKTIGFEQNFTIIDREDSIQLLTGCIEEL 127


>gi|310826557|ref|YP_003958914.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612]
 gi|308738291|gb|ADO35951.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612]
          Length = 734

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHT 71
            +D +++ + E   A+       + A AGSGKT  ++ R+  ++ +    PS +L +T T
Sbjct: 3   LLDGLNEQQRE--AAATTEGPVLILAGAGSGKTRTIIHRIAYIIESKKAWPSQILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+                                          +E    +
Sbjct: 61  NKAAGEMRERIA--------------------------------------AMNVEESDRI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T HA C  IM+          +F I D +  K+L +   K  
Sbjct: 83  WMYTFHAMCARIMRIHSQWLGYEDNFVIYDTDDQKRLYKTLIKEL 127


>gi|296314732|ref|ZP_06864673.1| DNA helicase II [Neisseria polysaccharea ATCC 43768]
 gi|296838466|gb|EFH22404.1| DNA helicase II [Neisseria polysaccharea ATCC 43768]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|254441324|ref|ZP_05054817.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307]
 gi|198251402|gb|EDY75717.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307]
          Length = 833

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 43/193 (22%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           +D  +     Q  A +       + A AG+GKT  L  R+  L+    A P  +L +T T
Sbjct: 34  VDYFAGLNPAQRQAVETLDGPVLMLAGAGTGKTKALTCRIAHLMATGRARPDEILAVTFT 93

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM +R+  +    S                                      G  
Sbjct: 94  NKAAREMKNRISGLTQGASE-------------------------------------GMR 116

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  ++++      + S F I D +   +L+++     L +  +D      + 
Sbjct: 117 WLGTFHAICVKLLRRHSELVGLKSSFTILDTDDQMRLLKQ----LLRASDIDEKRWPPRM 172

Query: 192 FYEILEISNDEDI 204
              I++   ++  
Sbjct: 173 LAGIIDGWKNKAW 185


>gi|194100011|ref|YP_002003150.1| UvrD [Neisseria gonorrhoeae NCCP11945]
 gi|193935301|gb|ACF31125.1| UvrD [Neisseria gonorrhoeae NCCP11945]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|59802078|ref|YP_208790.1| hypothetical protein NGO1757 [Neisseria gonorrhoeae FA 1090]
 gi|240017454|ref|ZP_04723994.1| UvrD [Neisseria gonorrhoeae FA6140]
 gi|240118830|ref|ZP_04732892.1| UvrD [Neisseria gonorrhoeae PID1]
 gi|260439632|ref|ZP_05793448.1| UvrD [Neisseria gonorrhoeae DGI2]
 gi|268604542|ref|ZP_06138709.1| DNA helicase II [Neisseria gonorrhoeae PID1]
 gi|291042871|ref|ZP_06568612.1| DNA helicase II [Neisseria gonorrhoeae DGI2]
 gi|293398115|ref|ZP_06642320.1| DNA helicase II [Neisseria gonorrhoeae F62]
 gi|59718973|gb|AAW90378.1| putative DNA helicase II [Neisseria gonorrhoeae FA 1090]
 gi|268588673|gb|EEZ53349.1| DNA helicase II [Neisseria gonorrhoeae PID1]
 gi|291013305|gb|EFE05271.1| DNA helicase II [Neisseria gonorrhoeae DGI2]
 gi|291611378|gb|EFF40448.1| DNA helicase II [Neisseria gonorrhoeae F62]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|41406991|ref|NP_959827.1| hypothetical protein MAP0893 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395342|gb|AAS03210.1| UvrD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 774

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 52/216 (24%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-N 59
           ++    +  SE   L+     +Q  A     S   + A AGSGKT +L +RV  L+ A  
Sbjct: 3   VHVTDAKPVSEAEQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRVAYLIAARG 62

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
                +L +T T  AAAEM  RV+ ++                            ++AR 
Sbjct: 63  VGVGQVLAITFTNKAAAEMRERVVRLVG---------------------------NRAR- 94

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS--- 175
                      + V T H+ C  I++        + S+F+I D + S++L++   +    
Sbjct: 95  ----------AMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRRLLQMIGRDMGL 144

Query: 176 --------TLASIMLDNNEELKKAFYEILEISNDED 203
                    LA+ + +   EL      +  +++  D
Sbjct: 145 DIKRYSPRLLANAISNLKNELIDPAAAVANLTDGSD 180


>gi|241759542|ref|ZP_04757645.1| DNA helicase II [Neisseria flavescens SK114]
 gi|241320099|gb|EER56460.1| DNA helicase II [Neisseria flavescens SK114]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +      +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQTSVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|254805722|ref|YP_003083943.1| DNA helicase II [Neisseria meningitidis alpha14]
 gi|254669264|emb|CBA08172.1| DNA helicase II [Neisseria meningitidis alpha14]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|24215017|ref|NP_712498.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|24196064|gb|AAN49516.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
          Length = 732

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 77/230 (33%), Gaps = 55/230 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            +S    EQ  A         + A AGSGKT ++  R+  LL+ +     +  +T T  A
Sbjct: 5   FLSDLNEEQKKAVLQVNGPVLILAGAGSGKTRVITHRIANLLINHG-IDRICAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +I+                                         P  ++++
Sbjct: 64  AAEMVERVKKIVPFL--------------------------------------PANVQIK 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS-----------TLASIMLD 183
           T H+ C  I+++        + F I D    + L+++  K            TL + +  
Sbjct: 86  TFHSLCLYILRREASFFGFDNGFTIYDTTLQESLLKQVIKDLSLDPKFYKPSTLGNYISG 145

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIIS---NRTALKLIFFFFSYLWR 230
             +++       LE     D    +S I      R      F F   +W+
Sbjct: 146 LKDKMLSP-ESYLEKEGRNDFSKAVSAIYKEYEKRKDANYAFDFGDLIWK 194


>gi|116493117|ref|YP_804852.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC
           25745]
 gi|116103267|gb|ABJ68410.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC
           25745]
          Length = 757

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 46/192 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
             I  ++  + E +  ++      + A AGSGKT +L  RV  L+     +P  +L +T 
Sbjct: 5   NLIKGLNDMQKEAVQTTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNVLAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++                                       +    
Sbjct: 63  TNKAAREMRERVTSLLG--------------------------------------DEAAE 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELK 189
           + V T HA C  I+++   +      F+IAD  + + L     K  LA +  D  + + +
Sbjct: 85  IWVSTFHALCVRILRRNIDQLGYNRAFSIADPSEQRTL----VKHILADLNYDPKKFDPR 140

Query: 190 KAFYEILEISND 201
                I    ND
Sbjct: 141 SVLGTISNAKND 152


>gi|319411282|emb|CBY91690.1| DNA helicase II [Neisseria meningitidis WUE 2594]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|240129046|ref|ZP_04741707.1| UvrD [Neisseria gonorrhoeae SK-93-1035]
 gi|268687424|ref|ZP_06154286.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035]
 gi|268627708|gb|EEZ60108.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|163732146|ref|ZP_02139592.1| UvrD/REP helicase [Roseobacter litoralis Och 149]
 gi|161394444|gb|EDQ18767.1| UvrD/REP helicase [Roseobacter litoralis Och 149]
          Length = 868

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + E +   D      + A AG+GKT  L  R++ LL    A P+ +L +T T
Sbjct: 27  YLDGLNPAQREAVEQLD--GPVLMLAGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM +RV  ++                                          G  
Sbjct: 85  NKAAREMKNRVGAMLGQPVE-------------------------------------GMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  ++++      + S+F I D +   +L+++     +++  +D+     + 
Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LVSAESIDDKRWPARQ 163

Query: 192 FYEILEISNDEDI 204
              I++   +   
Sbjct: 164 LASIIDGWKNSAF 176


>gi|307704790|ref|ZP_07641686.1| recombination helicase AddA [Streptococcus mitis SK597]
 gi|307621699|gb|EFO00740.1| recombination helicase AddA [Streptococcus mitis SK597]
          Length = 1216

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TVEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLTRGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                  KI  +    SD+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEK------------------KISQQIQESSDVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L++         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|282855099|ref|ZP_06264431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139]
 gi|282581687|gb|EFB87072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139]
          Length = 810

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++     Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+L     + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLTTLVARD 164


>gi|15639883|ref|NP_219333.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026121|ref|YP_001933893.1| ATP-dependent nuclease, subunit A [Treponema pallidum subsp.
           pallidum SS14]
 gi|3323214|gb|AAC65853.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018696|gb|ACD71314.1| possible ATP-dependent nuclease, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291060257|gb|ADD72992.1| ATP-dependent DNA helicase UvrD [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 1239

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 15/168 (8%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71
                    +EQ  A   + +A V+A AGSGKT ++  R + L++  A P   ++ LT T
Sbjct: 5   LFSFFQSLNAEQRRAVFSSHNAVVTAGAGSGKTKVISARYIHLVVERAIPVERIVVLTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM+ R+ E +          L  +    Q +  +++ + +AR  L       G  
Sbjct: 65  RKAAMEMARRIYEDLR---------LCVQSASAQPEPGHEAYLLRAREALARF----GEA 111

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           ++ T+ AF   I +       I   F+   EE+++ L  E  +     
Sbjct: 112 RIMTLDAFSHEIARVGARFFGIAPDFS-LSEEENRALAHECAEDFFLE 158


>gi|16330097|ref|NP_440825.1| DNA helicase II [Synechocystis sp. PCC 6803]
 gi|1652584|dbj|BAA17505.1| DNA helicase II [Synechocystis sp. PCC 6803]
          Length = 793

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++     Q  A +       V A AGSGKT  L  R+  L+  +  +P  +L +T T 
Sbjct: 8   DYLAHLNPSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIAHLIRQHRINPENILAVTFTN 67

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +I   ++    +   ++  ++ GK   K  +S+    +         L 
Sbjct: 68  KAAKEMKERLEKI---FAQAWAQQEFSQRWELLGKYEQKQLLSRVYKTVTK------PLW 118

Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIE 170
           + T H+ C  I++    ++   +    T  F+I DE   + L +
Sbjct: 119 IGTFHSLCSRILRYDIDKYQDSSGRRWTKQFSIFDESDVQSLFK 162


>gi|308388456|gb|ADO30776.1| DNA helicase II [Neisseria meningitidis alpha710]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|229917962|ref|YP_002886608.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b]
 gi|229469391|gb|ACQ71163.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b]
          Length = 738

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 53/223 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
           +    E +  ++  ++E +  +D      + A AGSGKT +L  RV  L+      P  +
Sbjct: 2   YNLSEELVKGMNPEQAEAVKHTD--GPLLIMAGAGSGKTRVLTHRVAYLMAAKQVAPWNI 59

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  R+  ++   +                                   
Sbjct: 60  LAITFTNKAAREMKDRIARLVGGVAE---------------------------------- 85

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------- 175
                + + T H+ C  I+++          F+I D       I++  K           
Sbjct: 86  ----DIWISTFHSMCVRILRRDIDRIRYDRSFSILDASDQLTAIKQVLKELNLDPKKYEP 141

Query: 176 -TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
            TL  ++ ++  EL+ A  +   +  +   E +ISD+ +    
Sbjct: 142 RTLLGMISNHKNELRTA-KDAAALVGNNPYERIISDVYTAYEK 183


>gi|327478847|gb|AEA82157.1| DNA-dependent helicase II [Pseudomonas stutzeri DSM 4166]
          Length = 729

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 43/185 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A AGSGKT +LV R+  L  +  A   ++L +T T  AAAEM  
Sbjct: 15  AQRQAVAALLGRQLVLAGAGSGKTRVLVHRIAWLHQVERASLHSILSVTFTNKAAAEMRQ 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                         P G+ V T H   
Sbjct: 75  RIEQLLHV--------------------------------------NPQGMWVGTFHGLA 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++    EA +  +F I D +  ++L     K  +  + LD      +     +    
Sbjct: 97  HRLLRAHWREAKLAENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWWINAQK 152

Query: 201 DEDIE 205
           DE + 
Sbjct: 153 DEGLR 157


>gi|325205321|gb|ADZ00774.1| DNA helicase II [Neisseria meningitidis M04-240196]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|288800136|ref|ZP_06405595.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333384|gb|EFC71863.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 1076

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 11/206 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    ++LL+ +      +L +T T  A  EM  R+L  +   S  L D 
Sbjct: 10  ASAGSGKTFTLTIEYIKLLIKDPLSYKQILAVTFTNKATEEMKMRILSQLYGLSRLLPDS 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               EI K   +   +    ++   L  ++      ++QTI  F + ++     E ++T+
Sbjct: 70  NAYLEIIKKDTELSEEQIRQRSSLALGYLIHNYSYFQIQTIDTFFQGVLNNLARELDLTA 129

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE-TLISDIISN 214
              +   ++   L E A    +  +  D   ++ K   ++LE + +E+    +IS++ S 
Sbjct: 130 KLRVTLNDEQ--LKERAVDRLIEEL--DPKNKVLKWVLDLLEENQEENKAWNVISELKS- 184

Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240
                   F   Y    K +   L  
Sbjct: 185 ---FGKNIFSDLYKQNEKQLSSFLED 207


>gi|300173630|ref|YP_003772796.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888009|emb|CBL91977.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG
           18811]
          Length = 747

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 42/176 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E I  ++  ++E +  +       + A AGSGKT +L  R+  L+   N  P  +L +T 
Sbjct: 5   ELISGMNDKQAEAVQIT--QGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  +++                                      +    
Sbjct: 63  TNKAAKEMRERISSLLSE-------------------------------------DVARD 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           + V T HA    I+++      +  +F I D    + L++        ++  D  +
Sbjct: 86  IWVSTFHALAVRILRRDGESIGLARNFTIIDTSAQRTLMKRVISDL--NLNTDQYD 139


>gi|261378597|ref|ZP_05983170.1| DNA helicase II [Neisseria cinerea ATCC 14685]
 gi|269144930|gb|EEZ71348.1| DNA helicase II [Neisseria cinerea ATCC 14685]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|297583056|ref|YP_003698836.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10]
 gi|297141513|gb|ADH98270.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10]
          Length = 773

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
            K +Q           + A AGSGKT +L  R+  L+     P  ++L +T T  AA EM
Sbjct: 36  NKEQQEAVVHNEGPLLIMAGAGSGKTRVLTNRIAYLIGEKGVPHWSILAITFTNKAAREM 95

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +   +                                        + + T H+
Sbjct: 96  KDRVKKNVGYEAE--------------------------------------EMWISTFHS 117

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C  I+++         +F I D      +I+   K 
Sbjct: 118 MCVRILRRDIDRIGYNRNFTILDASDQLTVIKRIIKE 154


>gi|94967078|ref|YP_589126.1| ATP-dependent DNA helicase Rep [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549128|gb|ABF39052.1| ATP-dependent DNA helicase, Rep family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 849

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 44/170 (25%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  + +   +Q  A +       + A AGSGKT ++  R+  L+      P ++L +T T
Sbjct: 1   MQFLEKLNPQQREAVETVHGPVLILAGAGSGKTRVITYRIAYLIEKVGVSPDSILAMTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++   +                                         
Sbjct: 61  NKAAAEMQERVEHLVGGRTLAKPV------------------------------------ 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITS-----HFAIADEEQSKKLIEEAKKST 176
            + T H+FC  ++++      I        FAI DE   + L++ A K  
Sbjct: 85  -ISTFHSFCVRVLRRDIEALQINGKGYRKDFAIYDESDQQSLVKSAMKRL 133


>gi|119713303|gb|ABL97368.1| DNA helicase II [uncultured marine bacterium HF10_45G01]
          Length = 428

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72
           D +      Q  A         + A AGSGKT +L  R+  ++      P+ +L +T T 
Sbjct: 5   DYLKNLNDAQKEAVLHLDGPLLIVAGAGSGKTKVLTSRIANIIKEKKAFPNQILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM +RV +I+ + +                                      G   
Sbjct: 65  KAAKEMQNRVSKILGSTAV-------------------------------------GLSW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T H+ C  ++++    AN+ S+F I D +   +LI+   K+
Sbjct: 88  LGTFHSICAKLLRKHASAANLNSNFTIIDTDDQIRLIKNICKA 130


>gi|73662195|ref|YP_300976.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494710|dbj|BAE18031.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 738

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+++   EQ  A         + A AGSGKT +L  R+  LL   +  P  +L +T T  
Sbjct: 4   LVNKMNDEQSQAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   + +                                      L +
Sbjct: 64  AAKEMKARVETLVGEQAQV--------------------------------------LWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+ C  I+++      I  +F I D    K +I++  K+
Sbjct: 86  STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127


>gi|27381672|ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA 110]
 gi|27354841|dbj|BAC51826.1| DNA helicase II [Bradyrhizobium japonicum USDA 110]
          Length = 872

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L    A P+ +L +T T  
Sbjct: 50  YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPAEILSVTFTNK 109

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM HR+ +++                                          G   +
Sbjct: 110 AAREMKHRLGQMLGHAVE-------------------------------------GMPWL 132

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++     A + S+F + D +   +L+++     L +  +D+     +   
Sbjct: 133 GTFHSIGGRILRTHAELAQLKSNFTVLDVDDQVRLLKQ----LLQAENIDDKRWPARMLA 188

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 189 GLIDGWKNRGL 199


>gi|261391767|emb|CAX49221.1| DNA helicase II [Neisseria meningitidis 8013]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|188585100|ref|YP_001916645.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349787|gb|ACB84057.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 726

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 62/188 (32%), Gaps = 45/188 (23%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +++   EQ  A         V A AGSGKT +L  R+  LL     HP  +L LT T  A
Sbjct: 7   LAELNQEQTAAVTAGDGPVLVLAGAGSGKTKVLTYRIAYLLETKGIHPEQILALTFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV                                        TI+E      V 
Sbjct: 67  AGEMKERV---------------------------------------QTIVEGDAPSWVS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I+++          F I D     K+     K  LA   LD  +   +A  +
Sbjct: 88  TFHAACVRILRREIDLLGYGKDFLIYDTRDKTKI----VKDLLADFNLDKKKYPHQAVAK 143

Query: 195 ILEISNDE 202
            +    + 
Sbjct: 144 KISGVKNN 151


>gi|314982168|gb|EFT26261.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA3]
 gi|315090399|gb|EFT62375.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA4]
          Length = 810

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++     Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    I++       I+ +F+I D+  +K+L     + 
Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLTTLVARD 164


>gi|254674097|emb|CBA09881.1| DNA helicase II [Neisseria meningitidis alpha275]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|304314626|ref|YP_003849773.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588085|gb|ADL58460.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 916

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 43/205 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T++++           + A  G+GKT +LV+R   L+      P  +L +T T+ AA E+
Sbjct: 13  TENQKRAVKKTDGPLVIVAGPGAGKTRVLVERTAYLVKRKGVSPENILVITFTEKAADEL 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++  +   + L                                      +++ TIH+
Sbjct: 73  KSRLINCVGLDAEL--------------------------------------MQISTIHS 94

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIM-LDNNEELKKAFYEIL 196
           FC  I+++ P E ++ + F I DEE     +        L S M +    E  + F    
Sbjct: 95  FCSTILREHPEEHDLGAGFEILDEESQLMFLRSVFYRIGLNSFMKMGEVHEAIEFFNRCT 154

Query: 197 EISNDEDIETLISDIISNRTALKLI 221
           E   D D   L+  +       K  
Sbjct: 155 ENCVDPD--ELMEALKKRYPDKKRY 177


>gi|296110659|ref|YP_003621040.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154]
 gi|295832190|gb|ADG40071.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154]
          Length = 749

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 52/206 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E I+ ++  ++E +  +       + A AGSGKT +L  R+  L+   N  P  +L +T 
Sbjct: 5   ELINGMNDKQAEAVQTT--QGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  +++                                      +    
Sbjct: 63  TNKAAKEMRERISALLSE-------------------------------------DVARD 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T HA    I+++      ++ +F I D    K L+    K  ++ + LD N+   +
Sbjct: 86  IWVSTFHALAVRILRRDGENIGLSRNFTIIDTSAQKTLM----KRVISDLNLDTNQYDPR 141

Query: 191 AFYEILEISNDEDIETLISDIISNRT 216
               ++  + +        D++  R 
Sbjct: 142 TILGMISNAKN--------DMLRPRD 159


>gi|219667567|ref|YP_002458002.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
           DCB-2]
 gi|219537827|gb|ACL19566.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
           DCB-2]
          Length = 755

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 74/222 (33%), Gaps = 48/222 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++           + A AGSGKT +L  R+  L+     P  +L +T T  AA EM  RV
Sbjct: 11  QRQAVEHREGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITFTNKAAQEMRDRV 70

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             ++ +                                         GL V T H+ C  
Sbjct: 71  YSLVGSEGR--------------------------------------GLWVATFHSACVR 92

Query: 143 IMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           I++ +       +  F I D      LI    KS +  + LD  +   +A   ++  + +
Sbjct: 93  ILRSEIGYLPGYSRSFVIYDSGDQLALI----KSCMKELNLDEKKFAPRAIEAVISDAKN 148

Query: 202 EDIETLISDIISNR--TALKLIFFFFSYLWRRKIIEKSLWSI 241
           +    L  +  S R     +        L+ +K++  +    
Sbjct: 149 K---LLTPEDFSRRAKDYFEQKAERVYELYLKKLLANNALDF 187


>gi|319788397|ref|YP_004147872.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
 gi|317466909|gb|ADV28641.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
          Length = 726

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L  R+  L  +       +L 
Sbjct: 2   DVSHLLDGLNSAQREAVSA--PPGHYLVLAGAGSGKTRVLTHRIAWLNEVHGVPAHGILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R    +   S                                     
Sbjct: 60  VTFTNKAAGEMRSRADMQLRNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H     +++    EA +   F + D +  ++L++   +  
Sbjct: 84  --GMWIGTFHGIAHRLLRLHWNEARLPESFQVLDSDDQQRLVKRVVQQL 130


>gi|298292379|ref|YP_003694318.1| UvrD/REP helicase [Starkeya novella DSM 506]
 gi|296928890|gb|ADH89699.1| UvrD/REP helicase [Starkeya novella DSM 506]
          Length = 690

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q  A +               V A AGSGKT+ L  RV  L++  A P  ++
Sbjct: 6   YLDKLNPQQRRAVEHGIAGPGDVTGGPLLVIAGAGSGKTNTLAHRVAHLIVNGADPRRIM 65

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT ++ AAAEM+ RV  I       +  +L+  +T                        
Sbjct: 66  LLTFSRRAAAEMTRRVERIAAHVLGPNAAVLTEGLTFA---------------------- 103

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     +++ + ++  +  +F I D E S  LI   +   
Sbjct: 104 -------GTFHGVGARLLRDYAVQIGLDPNFTIHDREDSADLINLVRHEL 146


>gi|328946442|gb|EGG40582.1| exonuclease RexA [Streptococcus sanguinis SK1087]
          Length = 1224

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 79/228 (34%), Gaps = 41/228 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++VQR++  +L     S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                   + K  G+   +++  + +  L   L       + T+ AF
Sbjct: 89  ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            + ++ +         +F I      + +++              NE   + F    +  
Sbjct: 130 TQKVLSRHGYLLGWAPNFRILQSASEQLILQ--------------NEVFSQVFDRYYDSK 175

Query: 200 NDEDIETLISDIISNRTAL--------KLIFFFFSYLWRRKIIEKSLW 239
                  L+ +    R  L        ++  F  S    ++ +E++  
Sbjct: 176 RQALFSRLVKNFTGKRKDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223


>gi|254881794|ref|ZP_05254504.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641188|ref|ZP_07995889.1| helicase [Bacteroides sp. 3_1_40A]
 gi|254834587|gb|EET14896.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387162|gb|EFV68040.1| helicase [Bacteroides sp. 3_1_40A]
          Length = 796

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + + +    Q  A       + V A AGSGKT +L  ++  LL     P ++L LT T  
Sbjct: 3   NYLEELNESQRNAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                                       +    L +
Sbjct: 63  AAREMKERIARQVG--------------------------------------DQARYLWM 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS+F I D   SK LI+   K  
Sbjct: 85  GTFHSIFSRILRCEAQAVGFTSNFTIYDSSDSKSLIKSIVKEM 127


>gi|124266478|ref|YP_001020482.1| DNA helicase/exodeoxyribonuclease V subunit A [Methylibium
           petroleiphilum PM1]
 gi|124259253|gb|ABM94247.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylibium
           petroleiphilum PM1]
          Length = 1086

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 9/200 (4%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +A DP RS  V A AG+GKT +LV R+LR LL  A P  +L +T T+ AA EM  R+  
Sbjct: 22  RVACDPRRSVVVEACAGAGKTWMLVSRILRALLDGAAPQEILAITFTRKAAGEMRERLQG 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAI 143
            +  ++   D      +      +     +      L + L + G L +++T H +   +
Sbjct: 82  WLHEFALCDDAQREQALVDRGCTRQEAGVLVPRLAALYSELLSGGRLVEIRTFHGWFSQL 141

Query: 144 MQQFPLE----ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           ++  PL       + S   + ++     L     +  L+++  D    L++ F  ++   
Sbjct: 142 LRAAPLALLEPLGLQSEVDLLEDR--SDLQPHYWRRFLSAVSAD--AALREDFAALVHDR 197

Query: 200 NDEDIETLISDIISNRTALK 219
                +  +   +  R  ++
Sbjct: 198 GRHVAQQWLEAALDQRVEIE 217


>gi|254453679|ref|ZP_05067116.1| UvrD/REP helicase [Octadecabacter antarcticus 238]
 gi|198268085|gb|EDY92355.1| UvrD/REP helicase [Octadecabacter antarcticus 238]
          Length = 837

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           +D        Q  A +       + A AG+GKT  L  R+  L+    A P  +L +T T
Sbjct: 34  VDYFEGLNPAQRQAVETLNGPVLMLAGAGTGKTKALTCRIAHLMATGGARPDEILAVTFT 93

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM +R+  +    S                                      G  
Sbjct: 94  NKAAREMMNRIGGLTQGASD-------------------------------------GMR 116

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            + T HA C  ++++      + S+F I D +   +L+++  ++
Sbjct: 117 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQLIRA 160


>gi|92119222|ref|YP_578951.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91802116|gb|ABE64491.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis
           X14]
          Length = 689

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 33/172 (19%)

Query: 8   QEHSETIDLISQTKSEQL----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           Q  +  +D ++  +   +        P     V A AGSGKT+ L  RV  L++  A P 
Sbjct: 2   QPAAPYLDSLNPEQRRAVEHGTAGPGPFAPLLVIAGAGSGKTNTLAHRVAHLIVNGADPR 61

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T ++ AA+EM+ RV  I       +  +L+  +T                     
Sbjct: 62  RILLMTFSRRAASEMTRRVERIARKVMGDNAGVLTDALT--------------------- 100

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                      T H     +++ +  +  +   F I D E S  L+   +  
Sbjct: 101 --------WSGTFHGIGARLLRDYSDQIGLDPQFTIHDREDSADLMNLIRHE 144


>gi|228904778|ref|ZP_04068832.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
 gi|228854792|gb|EEM99396.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
          Length = 644

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 74/219 (33%), Gaps = 50/219 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             S+Q           V A AGSGKT +L  R+  LL     P  +L +T T  +A EM 
Sbjct: 5   NSSQQRAVLTTEGRVLVLAGAGSGKTKVLTTRIAYLLQQGVDPWRILAITFTNKSAKEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV  + +  S                                          + T H+ 
Sbjct: 65  ERVTGMDSRASKS---------------------------------------WIGTFHSI 85

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEELKKA 191
           C  I+        +   F + D+   K L++        EA K+ + +++   +    +A
Sbjct: 86  CNRILSTNIHHLGMD-MFTLMDDTDQKALVKTAAVQLGLEADKNIVYNLLSQISLWKNEA 144

Query: 192 FY-EILEISNDEDIETL-ISDIISNRTALKLIFFFFSYL 228
                 + ++  D E L +S I      LK I  +F Y 
Sbjct: 145 ISPGQAQSNSTGDKEKLAVSHIYQKYEDLKAIHNYFDYD 183


>gi|75758386|ref|ZP_00738509.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74494112|gb|EAO57205.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 653

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 74/219 (33%), Gaps = 50/219 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             S+Q           V A AGSGKT +L  R+  LL     P  +L +T T  +A EM 
Sbjct: 14  NSSQQRAVLTTEGRVLVLAGAGSGKTKVLTTRIAYLLQQGVDPWRILAITFTNKSAKEMK 73

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV  + +  S                                          + T H+ 
Sbjct: 74  ERVTGMDSRASKS---------------------------------------WIGTFHSI 94

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEELKKA 191
           C  I+        +   F + D+   K L++        EA K+ + +++   +    +A
Sbjct: 95  CNRILSTNIHHLGMD-MFTLMDDTDQKALVKTAAVQLGLEADKNIVYNLLSQISLWKNEA 153

Query: 192 FY-EILEISNDEDIETL-ISDIISNRTALKLIFFFFSYL 228
                 + ++  D E L +S I      LK I  +F Y 
Sbjct: 154 ISPGQAQSNSTGDKEKLAVSHIYQKYEDLKAIHNYFDYD 192


>gi|259416911|ref|ZP_05740831.1| DNA helicase II [Silicibacter sp. TrichCH4B]
 gi|259348350|gb|EEW60127.1| DNA helicase II [Silicibacter sp. TrichCH4B]
          Length = 811

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  ++ ++  + E +   D      + A AG+GKT  L  R++ LL  N A  + +L +T
Sbjct: 25  TPYMEGLNAAQREAVETLD--GPVLMLAGAGTGKTKALTTRIVHLLTTNRARTNEILAVT 82

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++   +                                      G
Sbjct: 83  FTNKAAREMKERVGRMLGQPAE-------------------------------------G 105

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+ C  ++++      + S+F I D +   +L+++     + +  +D+     
Sbjct: 106 MPWLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIQAAGIDDKRWPA 161

Query: 190 KAFYEILEISNDEDI 204
           +    I++   +  +
Sbjct: 162 RMLANIIDDWKNRAL 176


>gi|325135039|gb|EGC57667.1| DNA helicase II [Neisseria meningitidis M13399]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|218767076|ref|YP_002341588.1| DNA helicase II [Neisseria meningitidis Z2491]
 gi|6900436|emb|CAB72035.1| DNA helicase II [Neisseria meningitidis]
 gi|121051084|emb|CAM07354.1| DNA helicase II [Neisseria meningitidis Z2491]
          Length = 735

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|83954004|ref|ZP_00962725.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841949|gb|EAP81118.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1]
          Length = 806

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  +   +   D      + A AG+GKT  L  R++ L+    A P+ +L +T T
Sbjct: 27  YLDGLNPAQRAAVEQMD--GPVLMLAGAGTGKTKALTARIVHLMNTGRARPNEILAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM +RV  ++                                          G  
Sbjct: 85  NKAAREMKNRVGHMLGQSIE-------------------------------------GMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  ++++      + S+F I D +   +L+++     + +  +D+     + 
Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LIKAEGIDDKRWPARL 163

Query: 192 FYEILEISNDEDI 204
              +++   +  +
Sbjct: 164 LSGVIDGWKNRAL 176


>gi|326387191|ref|ZP_08208801.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208372|gb|EGD59179.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 764

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 49/223 (21%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           +  E +  +++ + E +L++D      + A AG+GKT  L  R+  LL    A PS +LC
Sbjct: 11  DLPEWLSRLNEPQREAVLSTD--GPVLMLAGAGTGKTAALTARLAWLLRQRLAWPSEILC 68

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV  +I                                         
Sbjct: 69  VTFTNKAAREMRERVGHLIGPAVE------------------------------------ 92

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G   + T HA    ++++      +TS+F I D +   +L+++     + +  +D+   
Sbjct: 93  -GMPWLGTFHAIAAKMLRRHAELVGLTSNFTILDTDDQLRLLKQ----LIQAEGVDDKRW 147

Query: 188 LKKAFYEILEISNDE-----DIETLISDIISNRTALKLIFFFF 225
             +    +++   +      D++ L ++  +N    +    + 
Sbjct: 148 PARQLAGLIDRWKNRGLNPADLDALENEAYANGRGQRFYALYQ 190


>gi|325474933|gb|EGC78119.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola
           F0402]
          Length = 745

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 41/160 (25%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D ++    EQL A     S   + A AGSGKT ++  ++  L+   N  P  +L +T T 
Sbjct: 5   DYLNILNEEQLAAVKHQGSPLLILAGAGSGKTRVITTKIAYLIAEHNIEPERILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EMS R                                          + +      
Sbjct: 65  KAAKEMSER---------------------------------------ASNLDKRAERAM 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           ++T H+F   I++ +   A ++ +F I D++ +  L+ +A
Sbjct: 86  IRTFHSFGAWILRMYAEWAGLSHNFTIYDDDDALSLLTQA 125


>gi|150006034|ref|YP_001300778.1| putative helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934458|gb|ABR41156.1| putative helicase [Bacteroides vulgatus ATCC 8482]
          Length = 796

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + + +    Q  A       + V A AGSGKT +L  ++  LL     P ++L LT T  
Sbjct: 3   NYLEELNESQRNAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                                       +    L +
Sbjct: 63  AAREMKERIARQVG--------------------------------------DQARYLWM 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS+F I D   SK LI+   K  
Sbjct: 85  GTFHSIFSRILRCEAQAVGFTSNFTIYDSSDSKSLIKSIVKEM 127


>gi|37521963|ref|NP_925340.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212962|dbj|BAC90335.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
          Length = 793

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 26/170 (15%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q           V A AGSGKT +L  R+  L+      P  +L +T T  AA EM
Sbjct: 10  NPSQQKAVERFNGPLLVVAGAGSGKTRVLTYRIAHLIETYQVDPEHILAVTFTNKAAGEM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+L++        +    +   +     P+    + A  +   +++    L V T HA
Sbjct: 70  KERILQL------FCERTARSRGGEAFAALPDPERRAIAGRVRRELIQ---PLWVGTFHA 120

Query: 139 FCEAIMQQFPLEANITS-----------HFAIADEEQSKKLIEEAKKSTL 177
            C  +++      +I             +F I DE   +  I++     L
Sbjct: 121 LCARMLRY-----DIDKYTDQRGRTWQRNFTIFDESDVQDQIKDIVTKQL 165


>gi|325283117|ref|YP_004255658.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
 gi|324314926|gb|ADY26041.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
          Length = 767

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 41/160 (25%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+SQ   +Q  A+D  T  A V A AGSGKT  L+ R+  L+         +L +T T 
Sbjct: 34  DLLSQLNEQQAAAADHFTGPALVIAGAGSGKTRTLIYRIAHLINHYGVDAGEILAVTFTN 93

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R   ++                                            L 
Sbjct: 94  KAAAEMRERAGRLVPEA---------------------------------------DRLW 114

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           + T H+    I++ +     +   F I D++    ++++ 
Sbjct: 115 MSTFHSAGVRILRAYGEHIGLKRGFVIYDDDDQLDILKQI 154


>gi|93569010|gb|ABF13475.1| helicase [Arcanobacterium pyogenes]
          Length = 868

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT +L  R+  L+ +    PS +L +T T  AA EM
Sbjct: 69  NAEQRRAVIHSGGHLLVVAGAGSGKTRVLTTRIYHLISSGSVRPSEILAITFTNKAAKEM 128

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +I                                        T   + + T H+
Sbjct: 129 RERLESMIGP--------------------------------------TAQRMWISTFHS 150

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C  I++       + S F I D   S +L+    + 
Sbjct: 151 ACVRILRAEHEALGMRSTFTIYDSADSNRLMTMVARE 187


>gi|218296511|ref|ZP_03497239.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218243053|gb|EED09585.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 701

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 59/167 (35%), Gaps = 40/167 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           SE   L S  ++++         A V A AGSGKT  +V RV  L+      PS +L +T
Sbjct: 7   SEEALLSSLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLIARRGVFPSEILAVT 66

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++                                          G
Sbjct: 67  FTNKAAEEMKARLKAMVRGA---------------------------------------G 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            L V T HA    I++ +     +   F + DE+    L++E  K  
Sbjct: 88  ELWVSTFHAAALRILRVYGERVGLKPGFVVYDEDDQTALLKEVLKEL 134


>gi|313678484|ref|YP_004056224.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45]
 gi|312950464|gb|ADR25059.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45]
          Length = 734

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 39/198 (19%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + ++  + +++ ++E L   D      + A AGSGKT +L +++  L+ +    P+ +L 
Sbjct: 10  QKAKIFEGLNEEQTEALYYFD--GPLRIIAGAGSGKTRVLTRKIAYLINVLGISPNHILA 67

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEMS RV +                                           
Sbjct: 68  VTFTNKAAAEMSERVKQ------------------------------------YTNTKFN 91

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G  ++ T H+ C  I+++     N+ + F I D+   KK++++  K         N + 
Sbjct: 92  KGTAEISTFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDLYKEHDLIPTDSNFKN 151

Query: 188 LKKAFYEILEISNDEDIE 205
           L + F  +     D D E
Sbjct: 152 LIRLFSWLKNKLYDSDEE 169


>gi|302036648|ref|YP_003796970.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
 gi|300604712|emb|CBK41044.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
          Length = 717

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++D   +  ++Q  A +     A V A AGSGKT  LV RV  L+ +   PS +L LT T
Sbjct: 65  SLDYAKELNAQQYAAVTAADGPALVIAGAGSGKTRTLVHRVAYLIDSGVDPSQILLLTFT 124

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + ++ EM  RV  +I + S                                         
Sbjct: 125 RKSSEEMLERVGALIGSRSQRVCG------------------------------------ 148

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H+    ++++      I   F I D   ++ LI   +   
Sbjct: 149 --GTFHSVANMLLRRHGRVLGIEPGFTIMDRGDAEDLIALLRAQL 191


>gi|170099549|ref|XP_001880993.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644518|gb|EDR08768.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1055

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 76/200 (38%), Gaps = 46/200 (23%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     + A  GSGKT +L  R+  L+L +   P ++  +T T  AA EM  R+ ++I  
Sbjct: 40  PETPLQILAGPGSGKTKVLTSRIAHLILNHHLPPFSICAVTFTNKAANEMRERLTKLIGK 99

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                E    L++ T HA C   ++++ 
Sbjct: 100 -------------------------------------ERTSQLRMGTFHALCARFLRKYA 122

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDED---- 203
               +  +F + D E+SKK+I+   K   A +  +N + +  +    I +  + E     
Sbjct: 123 HLVKLAENFTVCDAEESKKIIQALLKPYTAYLASENLDLQPGRVVSSISKAKSKEQSGSV 182

Query: 204 -IETLISD--IISNRTALKL 220
            +E +I     I  R  L L
Sbjct: 183 FLEEVIKAERRIRQRNGLPL 202


>gi|81429165|ref|YP_396166.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610808|emb|CAI55859.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K]
          Length = 749

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +            + A AGSGKT +L  RV  L+   +  P  +L +T T  AA EM
Sbjct: 11  NPEQAEAVLTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEKHVLPWRILAITFTNKAAREM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                        + V T HA
Sbjct: 71  RERVGNLLGEGAQ--------------------------------------DVWVSTFHA 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I+++   +      F IAD  +   L+    +  
Sbjct: 93  LCVRILRREIEQIGYNRAFTIADPSEQLTLMRHVCRDL 130


>gi|328957929|ref|YP_004375315.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4]
 gi|328674253|gb|AEB30299.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4]
          Length = 748

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + ++ ++  + + ++ +       + A AGSGKT +L  R+  L+   N +P  +L +T 
Sbjct: 6   DLLNGMNPKQKDAVVCT--KGPLLIMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++                                            
Sbjct: 64  TNKAAKEMKERVTRLMKEGG--------------------------------------SD 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + V T H+ C  I+++       T  F I+D  + + L++   K 
Sbjct: 86  VWVSTFHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILKE 130


>gi|39935869|ref|NP_948145.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39649723|emb|CAE28244.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009]
          Length = 687

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 32/169 (18%)

Query: 11  SETIDLISQTKS---EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +  +D ++  +    E      P     V A AGSGKT+ L  RV  L++  A P  +L 
Sbjct: 5   APILDGLNPEQRCAVEHGAGPAPCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILL 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T ++ AAAEM+ RV  I           LS  +                          
Sbjct: 65  MTFSRRAAAEMTRRVERIARKVLGDRASALSGGLH------------------------- 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                  T H     +++ +     +   F I D E S  L+   +   
Sbjct: 100 ----WAGTFHGIGARLLRDYAERIGLDPGFTIHDREDSADLMNLVRHDL 144


>gi|307709426|ref|ZP_07645883.1| recombination helicase AddA [Streptococcus mitis SK564]
 gi|307619740|gb|EFN98859.1| recombination helicase AddA [Streptococcus mitis SK564]
          Length = 1216

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                  KI  +     D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEK------------------KISQQIQESGDVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILE- 197
            +  + +     +I  +F I   +  + L++         +   + + + K+ F  +L+ 
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
              + +D   L   +       K+  F  S    +K + +S  
Sbjct: 187 FAGSGKDERGLRQQVY------KIYDFLQSTSNPQKWLSESFL 223


>gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1]
 gi|119958641|gb|ABM15646.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1]
          Length = 775

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 42/160 (26%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++  + + +L         + A AGSGKT +L +R+  LL A +     +L +T 
Sbjct: 15  ELLDGLNPQQRQAVL--HQGTPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITF 72

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             +AR+           
Sbjct: 73  TNKAAAEMRERVVSLVG---------------------------PRARN----------- 94

Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169
           + V T H+ C  I++ Q  L   + S+F+I D + S++L+
Sbjct: 95  MWVSTFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 134


>gi|119387000|ref|YP_918055.1| UvrD/REP helicase [Paracoccus denitrificans PD1222]
 gi|119377595|gb|ABL72359.1| ATP-dependent DNA helicase, Rep family [Paracoccus denitrificans
           PD1222]
          Length = 799

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 49/198 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  +D ++  +   + A D      + A AG+GKT  L  R+  LL    A P  +L +T
Sbjct: 29  TPYLDGLNPAQRAAVEALD--GPVLLLAGAGTGKTRALTTRIAHLLNLGLARPGQILAVT 86

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++                                          G
Sbjct: 87  FTNKAAREMKDRIGRLLGEMVE-------------------------------------G 109

Query: 130 GLKVQTIHAFCEAIMQQFPLEAN-----ITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
              + T H+    I+++           +   F I D +   +L+++     + +  +D 
Sbjct: 110 MPWLGTFHSISVKILRRHAELIGDGELHLKPSFTILDTDDQIRLLKQ----LIQAENIDE 165

Query: 185 NEELKKAFYEILEISNDE 202
                +    +++   + 
Sbjct: 166 KRWPARQLAHLIDGWKNR 183


>gi|315452894|ref|YP_004073164.1| DNA helicase [Helicobacter felis ATCC 49179]
 gi|315131946|emb|CBY82574.1| DNA helicase [Helicobacter felis ATCC 49179]
          Length = 926

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 16/193 (8%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
            +      + A+AGSGKT  LV R + LLL       +L +T T  AAAEM  RVL+ + 
Sbjct: 5   INTNPHLVLRASAGSGKTFALVLRYVALLLQGVRAHEILAITFTNKAAAEMQGRVLKALE 64

Query: 88  AW--------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                         +  L   +    G         +   +    ++     ++ TI AF
Sbjct: 65  ELLIDATSNPVEFKNPALLQALQDTYGLDLGFIA-PRIPAVYARFIQ--DKPQIMTIDAF 121

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            + ++++F     +++ F ++  +  +KL+     S + ++   + E L++    +L  S
Sbjct: 122 FQRVLRKFSHFVGVSAQFVLSHLDPQEKLL-----SFIQALKSKDKESLRRFCAHVLNAS 176

Query: 200 NDEDIETLISDII 212
              +    +  I+
Sbjct: 177 KSFNATEALKSIL 189


>gi|299144359|ref|ZP_07037439.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518844|gb|EFI42583.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 730

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 42/176 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++  +SE LL ++      + A AGSGKT ++  ++  L+     +PS++L +T T  AA
Sbjct: 6   LNNKQSEALLKTE--GPVLILAGAGSGKTKVVTNKIAYLIDEKRVYPSSILAITFTNKAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV ++I                                            + + T
Sbjct: 64  NEMKERVAKLIDV--------------------------------------NVDAMWIGT 85

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKK 190
            H+ C  I+++     + +S+F+I D +    +I +  K   L   M  N   + K
Sbjct: 86  FHSICLRILRRNIERIDYSSNFSIYDRDDQNTVIRDCIKELNLNKEMYKNKSIIAK 141


>gi|58336855|ref|YP_193440.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM]
 gi|227903414|ref|ZP_04021219.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58254172|gb|AAV42409.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM]
 gi|227868890|gb|EEJ76311.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 746

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++           V A AGSGKT +L +R+  L+   N  P  +L +T T  A
Sbjct: 7   LANLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENNVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R  +++   +                                        + + 
Sbjct: 67  ASEMREREQDLLGPAAE--------------------------------------NIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   + N   +F+IAD  +   L++  +K  
Sbjct: 89  TFHALCVRILRRDADKINYDHNFSIADSAEQLTLVKHIEKDL 130


>gi|325269864|ref|ZP_08136474.1| helicase [Prevotella multiformis DSM 16608]
 gi|324987837|gb|EGC19810.1| helicase [Prevotella multiformis DSM 16608]
          Length = 1099

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    + L++ N      +L +T T  A  EM  R+L  +   +H LSD 
Sbjct: 10  ASAGSGKTFTLASEYIALVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHGLSDS 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               +    +   P  +    A   L  +       +VQTI AF +++++    E N+T+
Sbjct: 70  QAYFDQVVKKTGFPETTIREHAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLAHELNLTA 129

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  I   +   +   +A    + S+  +  EE+ K   + ++ + ++D
Sbjct: 130 NLRIDLNDDQVE--AQAVDEMINSL--EEGEEVLKWIRDYIDKNIEDD 173


>gi|299136332|ref|ZP_07029516.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
 gi|298602456|gb|EFI58610.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
          Length = 982

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 44/169 (26%)

Query: 15  DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++    +Q    +       + A AGSGKT ++  R+  L+    A P ++L +T T 
Sbjct: 45  DLLANMNPQQREGITSVDGPVLLLAGAGSGKTRVITHRIAYLIKERGAAPDSILAVTFTN 104

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ RV +I+   +  S  +                                    
Sbjct: 105 KAAKEMAERVEKILGHSTLASPTLA----------------------------------- 129

Query: 133 VQTIHAFCEAIMQQFPLEA-----NITSHFAIADEEQSKKLIEEAKKST 176
             T H+FC  ++++           +T  FAI DE   + ++++A K  
Sbjct: 130 --TFHSFCVRVLRRDIEALRVGNVGLTRSFAIYDENDQQAVVKQALKRL 176


>gi|83942766|ref|ZP_00955227.1| DNA helicase II, putative [Sulfitobacter sp. EE-36]
 gi|83846859|gb|EAP84735.1| DNA helicase II, putative [Sulfitobacter sp. EE-36]
          Length = 806

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  +   +   D      + A AG+GKT  L  R++ L+    A P+ +L +T T
Sbjct: 27  YLDGLNPAQRAAVEQMD--GPVLMLAGAGTGKTKALTARIVHLMNTGRARPNEILAVTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM +RV  ++                                          G  
Sbjct: 85  NKAAREMKNRVGHMLGQSIE-------------------------------------GMP 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  ++++      + S+F I D +   +L+++     + +  +D+     + 
Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LIKAEGIDDKRWPARL 163

Query: 192 FYEILEISNDEDI 204
              +++   +  +
Sbjct: 164 LSGVIDGWKNRAL 176


>gi|124266334|ref|YP_001020338.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1]
 gi|124259109|gb|ABM94103.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1]
          Length = 788

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 44/196 (22%)

Query: 12  ETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           E   L+     EQL A   P  +A + A AGSGKT +L  R+  L+      P+ ++ +T
Sbjct: 14  EAAGLLRHLNPEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLVQTGQVSPAGVMAVT 73

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  ++                                         P 
Sbjct: 74  FTNKAAKEMLTRLSTLLPV--------------------------------------NPR 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G+ + T H  C   ++     A +   F I D + S      A K  + ++ LD    + 
Sbjct: 96  GMWIGTFHGLCNRFLRAHWKLAGLPQGFQILDAQDSVS----AVKRIVKAMKLDEERYIP 151

Query: 190 KAFYEILEISNDEDIE 205
           K     +  + ++ + 
Sbjct: 152 KQCAWFIAGAKEDGLR 167


>gi|319407484|emb|CBI81134.1| DNA helicase II [Bartonella sp. 1-1C]
          Length = 815

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 44/198 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q     ++ ++    ++    +      V A AG+GKT +L  R+  +L    AHP  +L
Sbjct: 37  QHKPNYLEKLN--PEQKQAVINTEGPVLVLAGAGTGKTRVLTTRISHILHLGLAHPKQIL 94

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+ E++                                        
Sbjct: 95  AVTFTNKAAHEMKIRIGELVGETVENMP-------------------------------- 122

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T H+    I+++      + S+F I D +   +L+++     + +  LD+  
Sbjct: 123 -----WLGTFHSTGAKILRRHAELIGLKSNFTILDRDDVIRLLKQ----LIQAEALDDKR 173

Query: 187 ELKKAFYEILEISNDEDI 204
              +    +++   ++ +
Sbjct: 174 WPARNLAMMIDSWKNQGL 191


>gi|317165456|gb|ADV08997.1| hypothetical protein NGTW08_2046 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 735

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|315224086|ref|ZP_07865926.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287]
 gi|314945819|gb|EFS97828.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287]
          Length = 789

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 37/164 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
             +L S    ++           V A AGSGKT +L  R+  L+        +L LT T 
Sbjct: 5   LKELESLNAPQRAAVLQKDGPIIVIAGAGSGKTRVLTYRIANLMREGVDAFNILALTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                            L 
Sbjct: 65  KAANEMKKRIASLVGN-------------------------------------NEAKNLW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++    +     +F I D + S++LI    K  
Sbjct: 88  MGTFHSVFAKILRIEADKLGYPQNFTIYDTQDSQRLINGIIKEM 131


>gi|293365449|ref|ZP_06612158.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037]
 gi|291315817|gb|EFE56261.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037]
          Length = 1217

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 31/223 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +                  KI  +    +D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEK------------------KISQQIQEGNDVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIML-DNNEELKKAFYEILE 197
            +  + +     +I  +F I  +E +   L  E            +N E+  +       
Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLILKNEVFHQVFEDHYQGENKEKFSRLVKNFAG 189

Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              DE            R  + K+  F  S    +K +  S  
Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLNGSFL 223


>gi|228471345|ref|ZP_04056146.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3]
 gi|228306846|gb|EEK15959.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3]
          Length = 778

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 37/164 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +DL +  +++++        A V A AGSGKT ++  ++  L+    +P  L  LT T 
Sbjct: 1   MVDLTALNEAQRVAVVYNEGPALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV E++                                            L+
Sbjct: 61  KAAGEMRSRVSEMLGEGI-------------------------------------AYRLR 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I++++      +  ++I D   +K LI    K  
Sbjct: 84  MGTFHSICGRILRRYAPLLGYSQDYSIYDTSDTKALIRNCIKEL 127


>gi|329118654|ref|ZP_08247358.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465389|gb|EGF11670.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 805

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 40/172 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPST 64
           F   S +  L+     EQL A   P +SA V A AGSGKT +L  R+  LL  + A   +
Sbjct: 74  FSTESPSSALLQGLNPEQLAAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSSQASVHS 133

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++ +T T  AA EM  R+  +I                                      
Sbjct: 134 IMAVTFTNKAAKEMQTRLGAMIPV------------------------------------ 157

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 + + T H  C   ++    +A + + F I D      LI+   K+ 
Sbjct: 158 --NIRAMWLGTFHGLCHRFLRLHHRDAGLPASFQILDSGDQLSLIKRLLKTL 207


>gi|291456654|ref|ZP_06596044.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213]
 gi|291381931|gb|EFE89449.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213]
          Length = 901

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 40/158 (25%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +L+     +Q  A     ++  + A AGSGKT +L +R+  +L    A PS +L +T T 
Sbjct: 24  ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 83

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I   +                                        + 
Sbjct: 84  KAAVEMRERLGSLIGPVAQ--------------------------------------RMW 105

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           V T H+ C  I+++      + S F+I D   S++L++
Sbjct: 106 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 143


>gi|116328207|ref|YP_797927.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330931|ref|YP_800649.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120951|gb|ABJ78994.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124620|gb|ABJ75891.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 730

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           LI   + ++      T    + A AGSGKT ++  R+  LL+ +     +  LT T  AA
Sbjct: 6   LIGLNEEQKKAVLQITGPVLILAGAGSGKTRVITHRIANLLVNHG-IDRICALTFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  RV  ++                                         P  L+++T
Sbjct: 65  AEMVERVKNLVPFL--------------------------------------PTNLQIKT 86

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+ C  I+++        S F + D    + L+++  K  
Sbjct: 87  FHSLCLYILRREAFFFGFDSAFTVYDTTLQESLLKQVVKDL 127


>gi|256820896|ref|YP_003142175.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
 gi|256582479|gb|ACU93614.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
          Length = 789

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 37/164 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
             +L S    ++           V A AGSGKT +L  R+  L+        +L LT T 
Sbjct: 5   LKELESLNAPQRAAVLQKDGPIIVIAGAGSGKTRVLTYRIANLMREGVDAFNILALTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++                                            L 
Sbjct: 65  KAANEMKKRIASLVGN-------------------------------------NEAKNLW 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++    +     +F I D + S++LI    K  
Sbjct: 88  MGTFHSVFAKILRIEADKLGYPQNFTIYDTQDSQRLINGIIKEM 131


>gi|325203353|gb|ADY98806.1| DNA helicase II [Neisseria meningitidis M01-240355]
          Length = 735

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPVDVR--------------------------------------AMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|262047039|ref|ZP_06019998.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US]
 gi|293381896|ref|ZP_06627864.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1]
 gi|260572616|gb|EEX29177.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US]
 gi|290921543|gb|EFD98577.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1]
          Length = 748

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 46/224 (20%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 7   LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R  +++   +                                        + + 
Sbjct: 67  ASEMREREQKLLGPAA--------------------------------------NDIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA C  I+++   +     +F+IAD  +   L++  +K      +     + +     
Sbjct: 89  TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL---NINPKMYDPRGILAA 145

Query: 195 ILEISND-EDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
           I    ND  D E  +   +S   + A K+   +   L R +I++
Sbjct: 146 ISNGKNDLLDPEAFMQSALSPFEKMAAKVYEEYQRRLRRDQIMD 189


>gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2
           155]
 gi|118172641|gb|ABK73537.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2
           155]
          Length = 783

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 42/163 (25%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           E  + +D ++  + + +L         + A AGSGKT +L +R+  LL         +L 
Sbjct: 12  ETDQLLDGLNPQQRQAVL--HEGSPLLIVAGAGSGKTAVLTRRIAYLLAEREVGVGQVLA 69

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AAAEM  RV++++   +                                     
Sbjct: 70  ITFTNKAAAEMRERVVQLVGPRAK------------------------------------ 93

Query: 128 PGGLKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169
              + V T H+ C  I++ Q  L   + S+F+I D + S++L+
Sbjct: 94  --AMWVSTFHSTCVRILRNQASLLPGLNSNFSIYDSDDSRRLL 134


>gi|9257172|pdb|2PJR|A Chain A, Helicase Product Complex
 gi|9257173|pdb|2PJR|F Chain F, Helicase Product Complex
          Length = 548

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L    K +Q           + A AGSGKT +L  R+  L+   +  P  +L +T T  A
Sbjct: 9   LAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 69  AREMRERVQSLLGGAAE--------------------------------------DVWIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C  I+++      I  +F+I D      +++   K 
Sbjct: 91  TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKE 131


>gi|217967779|ref|YP_002353285.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
 gi|217336878|gb|ACK42671.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
          Length = 625

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           +D +++   EQL A  +  R   + A AGSGKT ++  ++  L+  N A P  ++ LT T
Sbjct: 1   MDFLNELNKEQLEAVFEIERPVLILAGAGSGKTRVITYKIAYLIKNNFAKPENIVALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                      ++    +
Sbjct: 61  NKAAEEMKRRIDNLLG-------------------------------------VKNVDKV 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H F   +++ F    N+  +F I DE   + LI++  K  
Sbjct: 84  WAGTFHGFGLYLLKNFGRYWNLCPNFVIYDENDQEDLIKDILKDL 128


>gi|87311977|ref|ZP_01094086.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
 gi|87285281|gb|EAQ77206.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
          Length = 701

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 38/163 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D +S     QL A +  +    V A AGSGKT ++  R+  L+     PS +L +T T  
Sbjct: 36  DPVSGLNQAQLDAVNTLSGPMLVLAGAGSGKTRVVTFRIANLIKHGVRPSRILAVTFTNK 95

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R L ++   +                                          V
Sbjct: 96  AAAEMRERALGLLGKKATEQPV-------------------------------------V 118

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C  ++++          FAI D    + +I  A +  
Sbjct: 119 STFHSHCVRVLRRHINRLGYPLKFAIYDRGDQESVIRAALREI 161


>gi|89891413|ref|ZP_01202919.1| DNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516444|gb|EAS19105.1| DNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 775

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 47/216 (21%)

Query: 15  DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D ISQ    Q         +  V A AGSGKT +L  R+  L+        +L LT T  
Sbjct: 3   DYISQLNDAQREPVLQKEGAMIVIAGAGSGKTRVLTLRIAYLMQQGVDAFNILSLTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +I+      +                                     L +
Sbjct: 63  AAREMKKRIADIVGQSEAKN-------------------------------------LWM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL----- 188
            T H+    +++    +    S+F I D + S++L+    K       +   +++     
Sbjct: 86  GTFHSVFARLLRMEADKLGYPSNFTIYDSQDSQRLVSAIIKEMGLDKDVYKYKQIASRIS 145

Query: 189 --KKAFYEILEISNDEDIETLISDIISNRTALKLIF 222
             K +   +    ND D++   +D ++ R     I+
Sbjct: 146 SMKNSLITVRAYFNDADLQE--ADAMARRPRFGDIY 179


>gi|309775326|ref|ZP_07670334.1| exonuclease RexA [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916908|gb|EFP62640.1| exonuclease RexA [Erysipelotrichaceae bacterium 3_1_53]
          Length = 281

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 79/197 (40%), Gaps = 31/197 (15%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81
           +        R+  VSA+AGSGKT +L+ R++ L++  +    ++L +T T+AAA EM  R
Sbjct: 2   QLKAIQTKERNILVSASAGSGKTTVLIARLMDLVMKDHVSIDSILAMTFTEAAANEMKKR 61

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   + +                       +   + +  +   L +     + TIH+FC 
Sbjct: 62  LATELQSAML-------------------TAQTEEEKAYITRQLTSIQTAHISTIHSFCL 102

Query: 142 AIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI---- 195
           +I+Q++     +      +I D        ++A    L        +     F ++    
Sbjct: 103 SIIQEYYYILGLDPQRIKSIMDNGTMVLFQQQA----LEEAFAKQYQLQDPVFLQLCQMF 158

Query: 196 -LEISNDEDIETLISDI 211
                ND+ + ++I ++
Sbjct: 159 SARAENDDALRSMIMNL 175


>gi|220920723|ref|YP_002496024.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060]
 gi|219945329|gb|ACL55721.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060]
          Length = 816

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++           V A AG+GKT +L  R+  L+    A P  +L +T T  AA EM
Sbjct: 73  NAEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIAIGRARPFDILAVTFTNKAAREM 132

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +I +                                        G   + T HA
Sbjct: 133 KERIGALIGSAGE-------------------------------------GMPWLGTFHA 155

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S F I   +   +L+++     + +  +D      ++  + ++ 
Sbjct: 156 IGTKILRRHAELVGLKSDFTILGTDDQLRLLKQ----VIEAANVDEKRWPARSLAQAIDG 211

Query: 199 SNDEDI 204
             +  +
Sbjct: 212 WKNRGL 217


>gi|126461535|ref|YP_001042649.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103199|gb|ABN75877.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 786

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 45/193 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ID ++  +   +LA D      + A AG+GKT  L  R++ LL +  A P+ +L +T T
Sbjct: 31  YIDELNPAQRAAVLALD--GPVLMLAGAGTGKTKALTARIVHLLDSGKARPNEILAVTFT 88

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++     +                                       
Sbjct: 89  NKAAREMKDRVARLLGQVEGMP-------------------------------------- 110

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA    I+++      + S+F I D +   +L+++     + +  +D      + 
Sbjct: 111 WMGTFHAISVKILRRHAELVGLKSNFTILDTDDQLRLLKQ----LIVAANIDEKRWPARM 166

Query: 192 FYEILEISNDEDI 204
              +++   +   
Sbjct: 167 LAGLIDHWKNRAW 179


>gi|304405679|ref|ZP_07387338.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9]
 gi|304345718|gb|EFM11553.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9]
          Length = 801

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AGSGKT +L  R+  L+      P ++L +T T  AA EM
Sbjct: 16  NPQQQAAVQATEGPLLIMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREM 75

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                        +   + V T H+
Sbjct: 76  QDRVAKLVGP--------------------------------------SGSDIWVSTFHS 97

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C  I+++       TS F+I D      +I    K 
Sbjct: 98  MCVRILRKDISRIGFTSSFSILDSGDQLSVIRTIMKE 134


>gi|182677780|ref|YP_001831926.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633663|gb|ACB94437.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 800

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 68/194 (35%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  +   + A +      V A AG+GKT +L  R+  +L    A    +L +T T
Sbjct: 41  YLDGLNPEQRRAVEALE--GPVLVLAGAGTGKTRVLTTRIAHILATGRARAHEILAVTFT 98

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   +                                      G  
Sbjct: 99  NKAAREMKERVAALVGPVAE-------------------------------------GMP 121

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA    I+++      + S F I D +   +L+++     L +  +D      ++
Sbjct: 122 WLGTFHAISTKILRRHAELVGLQSTFTILDTDDQIRLLKQ----VLQAANIDEKRWPARS 177

Query: 192 FYEILEISNDEDIE 205
               ++   +  ++
Sbjct: 178 LSYQIDAWKNRGLD 191


>gi|324993214|gb|EGC25134.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK405]
 gi|327461484|gb|EGF07815.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|299820618|ref|ZP_07052508.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601]
 gi|299818113|gb|EFI85347.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601]
          Length = 730

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 39/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L  R+  L+      P  +L +T T  AA EM
Sbjct: 13  NPEQRKAVETTEGPLLIMAGAGSGKTRVLTHRIAYLVREKGVSPYNILAITFTNKAAREM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                            + + T H+
Sbjct: 73  KARVGSLMGGEGE--------------------------------------SIWISTFHS 94

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C  I+++         +F I D      +I+   K 
Sbjct: 95  MCVRILRRDIDRIGYERNFTILDSGDQLSVIKGILKD 131


>gi|148258686|ref|YP_001243271.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1]
 gi|146410859|gb|ABQ39365.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1]
          Length = 686

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 36/167 (21%)

Query: 16  LISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            +     EQ  A +       P     + A AGSGKT+ L  RV  LL+  A P  +L +
Sbjct: 8   YLDDLNPEQRRAVEHGGACAAPGPPLLIIAGAGSGKTNTLAHRVAHLLVNGADPRRILLM 67

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AAAEMS RV  I         E ++A +T                          
Sbjct: 68  TFSRRAAAEMSRRVERIARKVLGGQAEAITAGLT-------------------------- 101

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 T H     +++ +     I + F I D E S  L+   +  
Sbjct: 102 ---WAGTFHGLGARMLRDYAERIGIDAVFTIHDREDSADLMNLVRHE 145


>gi|94984975|ref|YP_604339.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
 gi|94555256|gb|ABF45170.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
          Length = 741

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 58/159 (36%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L     ++   A+  T  A V A AGSGKT  LV R+  L+      P  +L +T T  A
Sbjct: 10  LAQLNPNQAQAANHYTGPALVIAGAGSGKTRTLVYRIAHLIGHYGVDPGEILAVTFTNKA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R                                   ARHL    +E    L + 
Sbjct: 70  AAEMRER-----------------------------------ARHL----VEGADRLWMS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H+    I++ +     +   F I D++    +++E  
Sbjct: 91  TFHSAGVRILRAYGEHIGLKRGFVIYDDDDQLDILKEIM 129


>gi|294778328|ref|ZP_06743753.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510]
 gi|294447835|gb|EFG16410.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510]
          Length = 796

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + + +    Q  A       + V A AGSGKT +L  ++  LL     P ++L LT T  
Sbjct: 3   NYLEELNESQRNAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+   +                                       +    L +
Sbjct: 63  AAREMKERIARQVG--------------------------------------DQARYLWM 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++        TS+F I D   SK LI+   K  
Sbjct: 85  GTFHSIFSRILRCESQSIGFTSNFTIYDSSDSKSLIKSIVKEM 127


>gi|192291516|ref|YP_001992121.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
 gi|192285265|gb|ACF01646.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
          Length = 687

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 32/169 (18%)

Query: 11  SETIDLISQTKS---EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +  +D ++  +    E      P     V A AGSGKT+ L  RV  L++  A P  +L 
Sbjct: 5   APILDGLNPEQRCAVEHGAGPAPCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILL 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T ++ AAAEM+ RV  I           LS  +                          
Sbjct: 65  MTFSRRAAAEMTRRVERIARKVLGDRASALSGGLH------------------------- 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                  T H     +++ +     +   F I D E S  L+   +   
Sbjct: 100 ----WAGTFHGIGARLLRDYAERIGLDPGFTIHDREDSADLMNLVRHDL 144


>gi|169349910|ref|ZP_02866848.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552]
 gi|169293478|gb|EDS75611.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552]
          Length = 1236

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 33/227 (14%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           IS     Q  A      S  VSA AGSGKT ILV R+L L+   N +   LL LT T AA
Sbjct: 5   ISPLNDGQYEAVITRNCSILVSAPAGSGKTKILVNRILALIEEENYNVDELLVLTFTNAA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +       D+ L  +IT         + + K + LL           + 
Sbjct: 65  ALEMKQRLQVAL-------DQRLQDDITNEL-----SNHLLKQKQLLPKAY-------IT 105

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
             H FC  +++Q+     I S F I  +  +  +  +     +   + D+       F E
Sbjct: 106 NFHGFCSTLLKQYGYLIGINSKFDICTDPTT--IKHQILDQCIEKWINDDE------FME 157

Query: 195 ILEIS-NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240
            + +   +   ++  + I+        I+ F+ Y+     IEK+++ 
Sbjct: 158 FINLYFPEYYFKSFKNAILKFENLSNTIYNFYDYINE---IEKNIYD 201


>gi|308071013|ref|YP_003872618.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681]
 gi|305860292|gb|ADM72080.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681]
          Length = 774

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 45/192 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           E +  ++  + + + A +      + A AGSGKT +L  R+  L+      P  +L +T 
Sbjct: 8   EAVARLNPPQRQAVEAVE--GPLLIMAGAGSGKTRVLTHRIAYLIATRKTAPWGILAITF 65

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV ++I                                            
Sbjct: 66  TNKAAREMQDRVSKLIGPQGR--------------------------------------D 87

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++        S+F+I D      +I    +S +  + +D  +   K
Sbjct: 88  VWVSTFHSMCVRILRRDIERIGFISNFSILDSTDQLSVI----RSCMKDLNIDTKKFEPK 143

Query: 191 AFYEILEISNDE 202
           A   ++  + +E
Sbjct: 144 AVQSMMSTAKNE 155


>gi|148985758|ref|ZP_01818886.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71]
 gi|147922062|gb|EDK73185.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71]
 gi|301800092|emb|CBW32693.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           pneumoniae OXC141]
          Length = 1216

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVELKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L+E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K +  S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNSQKWLSDSFL 223


>gi|320529158|ref|ZP_08030250.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399]
 gi|320138788|gb|EFW30678.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399]
          Length = 747

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 44/191 (23%)

Query: 14  IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL       +Q   +       + A AGSGKT +L  R+  LL  +  P  +L +T T 
Sbjct: 1   MDLFQGLNEPQQRAVACLEGPLLIVAGAGSGKTRVLTYRIANLLAHDVPPYRILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +I   +H                                       + 
Sbjct: 61  KAAREMRDRVDTLIGEAAH--------------------------------------DVW 82

Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           + T H+FC   ++ +         +F I D   SK LI E     L  + +D       A
Sbjct: 83  LSTFHSFCARFLRIEIEHLKGYEKNFVIYDAADSKGLIREC----LKELNIDEKHTAPGA 138

Query: 192 FYEILEISNDE 202
               +  + + 
Sbjct: 139 VQSHISDAKNN 149


>gi|7414502|emb|CAB86224.1| putative DNA helicase [Prochlorococcus marinus subsp. pastoris str.
           NATL2]
          Length = 304

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
            ++     Q  A D         A AGSGKT  L  R+  L+      PS++L +T T  
Sbjct: 8   FLNGLNEAQSHAVDHFHGPLLAVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNK 67

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LK 132
           AA EM  R+  ++               +   GK      +++ R +   I       L 
Sbjct: 68  AAREMKDRLELLLAKRLS----------SLTHGKPWTALQVAEQREIRNRIHREISRELW 117

Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
           + T HA    +++    +F     +  T  F+I DE  ++ LI+E     L 
Sbjct: 118 IGTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDETDAQSLIKEIVTQDLQ 169


>gi|77462643|ref|YP_352147.1| ATP-dependent DNA helicase Rep [Rhodobacter sphaeroides 2.4.1]
 gi|77387061|gb|ABA78246.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           2.4.1]
          Length = 783

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 45/193 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ID ++  +   +LA D      + A AG+GKT  L  R++ LL +  A P+ +L +T T
Sbjct: 28  YIDELNPAQRAAVLALD--GPVLMLAGAGTGKTKALTARIVHLLDSGKARPNEILAVTFT 85

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++     +                                       
Sbjct: 86  NKAAREMKDRVARLLGQVEGMP-------------------------------------- 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA    I+++      + S+F I D +   +L+++     + +  +D      + 
Sbjct: 108 WMGTFHAISVKILRRHAELVGLKSNFTILDTDDQLRLLKQ----LIVAANIDEKRWPARM 163

Query: 192 FYEILEISNDEDI 204
              +++   +   
Sbjct: 164 LAGLIDHWKNRAW 176


>gi|325689990|gb|EGD31994.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK115]
          Length = 766

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|167631048|ref|YP_001681547.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1]
 gi|167593788|gb|ABZ85536.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1]
          Length = 731

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 43/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L S    ++           + A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 6   LHSLNPVQREAVLHQEGPLLLLAGAGSGKTRVLTHRIGHLIEQCRVSPFHILAITFTNKA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+  +I   +H                                       + V 
Sbjct: 66  AAEMRERLGRLIGPRAH--------------------------------------DVWVS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++   +      F I D +  ++L++E     L  + +D      +A   
Sbjct: 88  TFHSTCMRILRKDGEKLGYDRSFVIYDYDDQQRLLKEC----LKELNIDEKRFKPQAVGA 143

Query: 195 ILEISNDE 202
            +  + + 
Sbjct: 144 AISSAKNR 151


>gi|221638499|ref|YP_002524761.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           KD131]
 gi|221159280|gb|ACM00260.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           KD131]
          Length = 786

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 45/193 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ID ++  +   +LA D      + A AG+GKT  L  R++ LL +  A P+ +L +T T
Sbjct: 31  YIDELNPAQRAAVLALD--GPVLMLAGAGTGKTKALTARIVHLLDSGKARPNEILAVTFT 88

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++     +                                       
Sbjct: 89  NKAAREMKDRVARLLGQVEGMP-------------------------------------- 110

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA    I+++      + S+F I D +   +L+++     + +  +D      + 
Sbjct: 111 WMGTFHAISVKILRRHAELVGLKSNFTILDTDDQLRLLKQ----LIVAANIDEKRWPARM 166

Query: 192 FYEILEISNDEDI 204
              +++   +   
Sbjct: 167 LAGLIDHWKNRAW 179


>gi|78189378|ref|YP_379716.1| DNA helicase II [Chlorobium chlorochromatii CaD3]
 gi|78171577|gb|ABB28673.1| ATP-dependent DNA helicase PcrA [Chlorobium chlorochromatii CaD3]
          Length = 743

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 39/164 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           + +      Q  A +  +    V A AGSGKT ++  R+  L+      P  +L LT T 
Sbjct: 3   NFLHDLNEVQRSAVEATSGPVMVLAGAGSGKTRVITYRIAHLINNEGIAPRNILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++   +                                       GL 
Sbjct: 63  KAAGEMRERVDTLLHHGASR-------------------------------------GLW 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    +++          +F+I D + S+ LI ++    
Sbjct: 86  IGTFHSIFARLLRNSIDRIGYDRNFSIFDADDSRSLIRQSMAEL 129


>gi|324990953|gb|EGC22888.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK353]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|327459916|gb|EGF06256.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1057]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|313896178|ref|ZP_07829731.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974977|gb|EFR40439.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 747

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 44/191 (23%)

Query: 14  IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL       +Q   +       + A AGSGKT +L  R+  LL  +  P  +L +T T 
Sbjct: 1   MDLFQGLNEPQQRAVACLEGPLLIVAGAGSGKTRVLTYRIANLLAHDVPPYRILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +I   +H                                       + 
Sbjct: 61  KAAREMRDRVDTLIGEAAH--------------------------------------DVW 82

Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           + T H+FC   ++ +         +F I D   SK LI E     L  + +D       A
Sbjct: 83  LSTFHSFCARFLRIEIEHLKGYEKNFVIYDAADSKGLIREC----LKELNIDEKHTAPGA 138

Query: 192 FYEILEISNDE 202
               +  + + 
Sbjct: 139 VQSHISDAKNN 149


>gi|316934039|ref|YP_004109021.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315601753|gb|ADU44288.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 687

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 11  SETIDLISQTKS---EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +  +D ++  +    E   A+       V A AGSGKT+ L  RV  L++  A P  +L 
Sbjct: 5   APILDGLNPEQRCAVEHGAATASCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILL 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T ++ AAAEM+ RV  I           LS  +                          
Sbjct: 65  MTFSRRAAAEMTRRVERIARKVLGDRASALSGGLH------------------------- 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                  T H     +++ +     +   F I D E S  L+   +   
Sbjct: 100 ----WAGTFHGIGARLLRDYAERIGLDPGFTIHDREDSADLMNLVRHDL 144


>gi|90424242|ref|YP_532612.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90106256|gb|ABD88293.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
          Length = 687

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 62/170 (36%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            +     EQ LA +         P  +  V A AGSGKT+ L  RV  LL+  A P  LL
Sbjct: 5   YLDGLNPEQRLAVEHGIGANTASPAPALLVIAGAGSGKTNTLAHRVAHLLVDGADPRRLL 64

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T ++ AAAEMS RV  I+         ++S  +T                        
Sbjct: 65  LMTFSRRAAAEMSRRVERIVRKALGAQAGVVSDALT------------------------ 100

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     ++++   +  +   F I D E S  LI   +   
Sbjct: 101 -----WAGTFHGIGARLLREHAEQLGLDPAFTIHDREDSADLINLVRHEL 145


>gi|289670782|ref|ZP_06491857.1| DNA-dependent helicase II [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 728

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  
Sbjct: 2   DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR    +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H     +++    +A +   F + D +   +L++   +S 
Sbjct: 84  --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 130


>gi|261879280|ref|ZP_06005707.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334111|gb|EFA44897.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 1115

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 7/170 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHL--SD 94
           A+AGSGKT  L    ++LL+        +L +T T  A  EM  R+L  +   ++     
Sbjct: 13  ASAGSGKTFTLAVEYIKLLVQEPQNYRYILAVTFTNKATEEMKRRILGQLYGIANALPDS 72

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E     + K      +++   + +  L  IL      +V+TI +F + I+     E  +T
Sbjct: 73  ESYMDALHKAFPAMADRAIRERVKEALGLILHHYHEFRVETIDSFFQRILHNLSRELGLT 132

Query: 155 SHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++  +  ++ + +    +A  + + +I  DN+  L      I E  NDE 
Sbjct: 133 ANLQVGLNDFEVES---QAVDNIIDNIQQDNDPLLAWLMDFIKEKVNDEK 179


>gi|323139146|ref|ZP_08074203.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322395617|gb|EFX98161.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 718

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   EQ  A +         P     V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 34  YLEKLNPEQRQAVEHGVWEKRCAPGGPLLVIAGAGSGKTNTLAHRVAHLIVNGADPRRIL 93

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T ++ AAAEM+ RV  I       S  IL                             
Sbjct: 94  LMTFSRRAAAEMTRRVERICAEALGASAGIL----------------------------- 124

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T G     T H     +++++     + + F I D E +  L+   +   
Sbjct: 125 TNGLAWAGTFHGVGARLLREYAGGIGLNADFTIHDREDAADLMNLVRHEL 174


>gi|327489339|gb|EGF21132.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1058]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|229551867|ref|ZP_04440592.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
 gi|258539285|ref|YP_003173784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
 gi|229314811|gb|EEN80784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
 gi|257150961|emb|CAR89933.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
          Length = 750

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +  ++  ++E +LA++      + A AGSGKT +L  R+  L+   N +P  +L +T T
Sbjct: 6   ALKGMNDKQAEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                       E    +
Sbjct: 64  NKAAREMRERVGKLVDP-------------------------------------EIARDI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++   +      F IAD  +   L     K  LA   LD      K+
Sbjct: 87  WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142

Query: 192 FYEILEISNDEDIE 205
               +  + +E I+
Sbjct: 143 ILGAISGAKNELID 156


>gi|261365712|ref|ZP_05978595.1| DNA helicase II [Neisseria mucosa ATCC 25996]
 gi|288565733|gb|EFC87293.1| DNA helicase II [Neisseria mucosa ATCC 25996]
          Length = 735

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNLEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|121533515|ref|ZP_01665343.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1]
 gi|121308074|gb|EAX48988.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1]
          Length = 733

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
              D +++ + E    +       V A AGSGKT +L  R+  LL     P  +L +T T
Sbjct: 3   NLFDRLNEKQLE--AVTHINGPLLVLAGAGSGKTRVLTCRIAYLLEQGVRPYNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  ++   +                                        +
Sbjct: 61  NKAAAEMRERVNAMVGIQAK--------------------------------------EV 82

Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T HAFC   ++ +    A    +F I D   +  LI+   K  
Sbjct: 83  WLSTFHAFCARFLRMEIDHLAGFNRNFVIYDASDALALIKSCLKEL 128


>gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc7942_1157 [Synechococcus elongatus PCC
           7942]
 gi|23957809|gb|AAN40822.1| unknown [Synechococcus elongatus PCC 7942]
 gi|81168847|gb|ABB57187.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 1061

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 42/215 (19%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAA 76
              EQ  A     S  V+A AG+GKT +L QR L  L     +  P  ++ LT T+ AAA
Sbjct: 3   LTEEQRQAVQAAGSVAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKAAA 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ + +                    K P++SD           L      ++ T 
Sbjct: 63  ELRSRIRKAVG------------------NKWPDRSDW----------LAEVEAAQISTF 94

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+ C  I ++ P  A   + F I D+   K   +        +++    +EL  + ++++
Sbjct: 95  HSLCARICREHPAAAGQPADFTILDDLAGKLWQQ--------TVLTAAMQELDPSCFDVM 146

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
           + S   +  +L+  ++ +    + +    S  WR 
Sbjct: 147 DYS---EWRSLLETLLDDPVRSQALLAVESEQWRE 178


>gi|283782302|ref|YP_003373057.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283440755|gb|ADB19197.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 669

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 37/157 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +Q           V A AGSGKT ++  R+  L+     P  +L +T T  AAAEM 
Sbjct: 6   NPEQQEAVDTLRGPLLVLAGAGSGKTRVVTFRMANLIKHGTQPDRILAVTFTNKAAAEMQ 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           HR+  ++   S +                                       +V T H+ 
Sbjct: 66  HRLSALLKTKSKIKP-------------------------------------QVSTFHSH 88

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           C  ++++          FAI D    + L     +  
Sbjct: 89  CVRLLRRHARVLGYPEKFAIYDRGDQESLARGVLRDI 125


>gi|260437266|ref|ZP_05791082.1| ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus DSM 2876]
 gi|292810576|gb|EFF69781.1| ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus DSM 2876]
          Length = 748

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 45/211 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++        +  + A AGSGKT +L  R+  L+     +   +L +T T  AA EM
Sbjct: 8   NEQQKEGVFTTEGAVLILAGAGSGKTGVLTHRIAHLIDDLGVNSYNILAITFTNKAAKEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                          + T HA
Sbjct: 68  KERVDRLVGMGA--------------------------------------DSAWIMTFHA 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I++++       ++F I D +  K +I    K  L    LD  +   +    ++  
Sbjct: 90  ACVRILRRYICRIGYDNNFTIYDTDDQKSVI----KDILKRKNLDPKQYKDRTILSVISN 145

Query: 199 SNDEDI--ETLISDIISNRTALKLIFFFFSY 227
           + D  I  + +      N   +K    +  Y
Sbjct: 146 AKDNLISPDDMYQSSGGNYNTMKTAEIYREY 176


>gi|198284778|ref|YP_002221099.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666705|ref|YP_002427463.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249299|gb|ACH84892.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518918|gb|ACK79504.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 709

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 42/187 (22%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +    +    + P+  A V A AGSGKT +L  R+  LL  + +P  +L +T T  AA  
Sbjct: 6   ALNPRQMEAVTLPSGPALVLAGAGSGKTRVLTSRIAHLLEGDVYPGAILAVTFTNKAARA 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+  ++                                            L + T H
Sbjct: 66  MRGRLDGMVAM--------------------------------------DLRALWMGTFH 87

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
                +++       + + F + D + S++L+    +  +    +D  +   +A    + 
Sbjct: 88  GIAHRLLRMHHEVLGLPADFQVLDADDSQRLL----RRIMREAQMDEKQWPPRAMAGRIG 143

Query: 198 ISNDEDI 204
              DE  
Sbjct: 144 RWKDEGW 150


>gi|144575164|gb|AAZ43952.2| atp-dependent helicase [Mycoplasma synoviae 53]
          Length = 734

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 38/161 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           DL+     +Q  A +   S   + A AG+GKT +L +++L L+L     PS +L +T T 
Sbjct: 8   DLLDDLNEKQREAVEYFDSHLRIIAGAGTGKTKVLTRKILYLILEKKVDPSKILAVTFTN 67

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+                           N     K + L            
Sbjct: 68  KAAKEMKDRI---------------------------NSKYYDKQKVLFE---------N 91

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           V T+H+FC  +++++      + +F I DE   K+++++  
Sbjct: 92  VFTLHSFCAQVLRKYINLIGFSRNFPILDELDKKQVLQDLY 132


>gi|329767008|ref|ZP_08258536.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341]
 gi|328837733|gb|EGF87358.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341]
          Length = 728

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++ +      QL A      +  V A AGSGKT +L  R+  L+   N   S +L +T T
Sbjct: 1   MNFVQNMNDNQLKAILKTDGAVMVIAGAGSGKTRVLTNRIAYLIAEKNVLESNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                       ET   +
Sbjct: 61  NKAAKEMKERIYALVG--------------------------------------ETSKYI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+ C  I++Q         +F I D  + K +I+   K+ 
Sbjct: 83  WINTFHSMCVRILRQHIELLGYNKNFTILDTSEQKSIIKTIVKNL 127


>gi|327469639|gb|EGF15108.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK330]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|325129035|gb|EGC51885.1| DNA helicase II [Neisseria meningitidis N1568]
          Length = 735

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134


>gi|238926784|ref|ZP_04658544.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531]
 gi|238885316|gb|EEQ48954.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531]
          Length = 746

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 52/230 (22%)

Query: 14  IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL+      +Q   +       + A AGSGKT +L  R+  LL     P  +L +T T 
Sbjct: 1   MDLMQGLNEPQQRAVACLQGPLLIVAGAGSGKTRVLTFRIANLLEHGVPPYRILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +I   +                                        + 
Sbjct: 61  KAAREMRERVDTLIGDAAQ--------------------------------------DVW 82

Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           + T H+FC  +++ +         +F I D   SK LI E     L  + +D       A
Sbjct: 83  LSTFHSFCARLLRMELEHYGRYAKNFVIYDAADSKGLIREC----LKELNIDEKHTAPGA 138

Query: 192 FYEILEISNDEDIETLISDIISNRTAL------KLIFFFFSYLWRRKIIE 235
               +  + +  ++  ++   +  T        K+   + S L     ++
Sbjct: 139 VQAHISDAKNRLLD--VAAFTAQATDFFAEQVAKIYALYQSKLQENNALD 186


>gi|154252878|ref|YP_001413702.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
 gi|154156828|gb|ABS64045.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
          Length = 778

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +  ++ ++  + E + A D      V A AG+GKT +L  R+  LL    A P  +L +T
Sbjct: 30  APYLEGLNAEQREAVEALD--GPVLVLAGAGTGKTRVLTTRLAHLLATRKAWPGQILAVT 87

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  +I                                           
Sbjct: 88  FTNKAAREMRDRIGALIGGVVEGMQ----------------------------------- 112

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T HA    I+++    A + S F I D +   +L+++     + +  +D      
Sbjct: 113 --WLGTFHALGAKILRRHAELAGLRSDFTILDADDQMRLMKQ----IIVAEGIDEKRWPA 166

Query: 190 KAFYEILEISNDEDI 204
           +     ++   +  +
Sbjct: 167 RQLASHIDGWKNRGL 181


>gi|328945990|gb|EGG40137.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1087]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|324995484|gb|EGC27396.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK678]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|281491616|ref|YP_003353596.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375334|gb|ADA64847.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis
           KF147]
          Length = 758

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 47/234 (20%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +  +++ ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLQGMNEKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                                   A  L     +T 
Sbjct: 59  TFTNKAAKEMRER-----------------------------------ALSLTPRAQDTL 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D    K L+    K  L    LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM----KRILKEANLDPKKWE 135

Query: 189 KKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            K     +    ND   E+      S R   +++      ++++++ +      
Sbjct: 136 PKGLLNAISNAKNDLLDESAYEAQTSARHPYEMVVARVYKIYQKELRKAESMDF 189


>gi|74318467|ref|YP_316207.1| ATP-dependent DNA helicase UvrD [Thiobacillus denitrificans ATCC
           25259]
 gi|74057962|gb|AAZ98402.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 726

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           H   +D ++    ++   + P  SA + A AGSGKT +L  R++ L+      P  +L +
Sbjct: 8   HQRLLDSLN--PEQRAAVTLPHESALILAGAGSGKTRVLTTRIVWLVQTGQVSPHGILAV 65

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  ++                                          
Sbjct: 66  TFTNKAAKEMLTRISAMLPI--------------------------------------NT 87

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            G+ V T H     +++    EA +   F I D       I+   K+ 
Sbjct: 88  RGMWVGTFHGLANRLLRTHWREAGLPQSFQILDASDQLSAIKRLMKAM 135


>gi|323467081|gb|ADX70768.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus H10]
          Length = 753

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 12  LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R  +++   +                                        + + 
Sbjct: 72  ANEMREREQKLLGPAAQ--------------------------------------NIWMS 93

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +   + +F+IAD  +   L++  +K  
Sbjct: 94  TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 135


>gi|262282913|ref|ZP_06060680.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA]
 gi|262261165|gb|EEY79864.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|241890126|ref|ZP_04777424.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379]
 gi|241863748|gb|EER68132.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379]
          Length = 727

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++L+      QL A      +  V A AGSGKT +L  R+  L+   N   + +L +T T
Sbjct: 1   MNLVQNMNDNQLKAILKTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNILENNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                       ET   +
Sbjct: 61  NKAAKEMKERIYALVG--------------------------------------ETSKYI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+ C  I++Q         +F I D  + K +I+   +S 
Sbjct: 83  WINTFHSMCVRILRQHIELLGYNKNFTILDTSEQKSIIKNIVRSL 127


>gi|325696764|gb|EGD38652.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK160]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|291320248|ref|YP_003515509.1| ATP dependent helicase [Mycoplasma agalactiae]
 gi|290752580|emb|CBH40552.1| ATP dependent helicase [Mycoplasma agalactiae]
          Length = 734

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 46/230 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + ++  + +++ ++E L   D      + A AGSGKT +L +++  L+ +    P  +L 
Sbjct: 10  QKAKIFESLNEEQTEALYYFD--GPLRIIAGAGSGKTRVLTRKIAYLINVLGISPDHILA 67

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA+EMS RV +                                           
Sbjct: 68  VTFTNKAASEMSERVKQ------------------------------------YTNTKFN 91

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G  ++ T H+ C  I+++     N+ + F I D+   KK++++  K         N + 
Sbjct: 92  KGTAEISTFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDIYKEHDLVPTDSNFKN 151

Query: 188 LKKAFYEILE--ISNDEDIETLI-----SDIISNRTALKLIFFFFSYLWR 230
           L + F  +     ++DE+I   I     S+   +   +  I+ F++   +
Sbjct: 152 LTRFFSWLKNKLYASDEEIIDFINSDPESEFYGDGETVVKIYNFYNEQLK 201


>gi|167754673|ref|ZP_02426800.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402]
 gi|167705505|gb|EDS20084.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402]
          Length = 1233

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 24/172 (13%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           I+ ++  + E ++      S  VSA AGSGKT ILV R++ L+     +   LL LT T 
Sbjct: 3   INSLNDGQYEAVV--TRGCSILVSAPAGSGKTKILVNRIMALIEDDGYNVDQLLVLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+   +       DE L  +I K     P +  + K + LL           
Sbjct: 61  AAALEMKQRLQVAL-------DERLQEDINK-----PLEQHLLKQKQLLPKAY------- 101

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +   H FC  +++Q+    N+ S F I        +  +   + + +   D 
Sbjct: 102 ITNFHGFCSTLLKQYGYLINLNSKFDIC--TDPSLIKHQILDNCIETWAEDQ 151


>gi|42527836|ref|NP_972934.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405]
 gi|41818664|gb|AAS12853.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola
           ATCC 35405]
          Length = 745

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 41/160 (25%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D ++    EQL A     S   + A AGSGKT ++  ++  L+   N  P  +L +T T 
Sbjct: 5   DYLNILNEEQLSAVKHQGSPLLILAGAGSGKTRVITTKIAYLIAEHNIEPERILAVTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EMS R                                          + +      
Sbjct: 65  KAAKEMSER---------------------------------------ASNLDKRAERAM 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           ++T H+F   I++ +   A ++ +F I D++ +  L+ +A
Sbjct: 86  IRTFHSFGAWILRMYAEWAGLSHNFTIYDDDDALSLLTQA 125


>gi|327473788|gb|EGF19206.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK408]
          Length = 762

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|323136051|ref|ZP_08071134.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322399142|gb|EFY01661.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 778

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
            +     EQ  A +       V A AG+GKT  L  R+  +L L  A    +L +T T  
Sbjct: 27  YLEGLNPEQRAAVETLDGPVLVLAGAGTGKTRALTTRIAHILQLGKARAYEILAVTFTNK 86

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   +                                          +
Sbjct: 87  AAREMRERVEALVGEGAQAMQ-------------------------------------WL 109

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T HA    IM++      +  +F I D +   +L+++     L +  +D+     +A  
Sbjct: 110 GTFHAISAKIMRRHAELVGLKPNFTILDTDDQIRLLKQ----VLQAENIDDKRWPARALA 165

Query: 194 EILEISNDEDI 204
             ++   +  +
Sbjct: 166 MRIDGWKNRGL 176


>gi|15673102|ref|NP_267276.1| ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724080|gb|AAK05218.1|AE006344_7 ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406669|gb|ADZ63740.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactococcus
           lactis subsp. lactis CV56]
          Length = 758

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 47/234 (20%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +  +++ ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLQGMNEKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                                   A  L     +T 
Sbjct: 59  TFTNKAAKEMRER-----------------------------------ALSLTPRAQDTL 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D    K L+    K  L    LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM----KRILKEANLDPKKWE 135

Query: 189 KKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            K     +    ND   E+      S R   +++      ++++++ +      
Sbjct: 136 PKGLLNAISNAKNDLLDESAYEAQTSARHPYEMVVARVYKIYQKELRKAESMDF 189


>gi|313890533|ref|ZP_07824161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121050|gb|EFR44161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 1217

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 25/220 (11%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R++  ++       +   T T  AA E+ 
Sbjct: 29  TPEQIEAIYCNGQNILVSASAGSGKTFVMVERIIDKVMRGIAIDEMFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +   A    S +                   ++ +  L   L+      + T+ AF
Sbjct: 89  ERLEKRFLALIKESSD-------------------AEWKAYLNQQLQGISQADIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            + ++ Q+     I+  F I  ++  + +++     ++ +  +D+ E L      +   S
Sbjct: 130 TQKLLSQYSYTLGISPKFRIMQDKSEQDILKNRIYESIFANYMDSKESLT-FMKTVKNFS 188

Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
                      I+      K+  F  S     + +EK+  
Sbjct: 189 GHRKDSKGFRAIV-----YKIYEFSQSTEDPLEWLEKTFL 223


>gi|261880622|ref|ZP_06007049.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361]
 gi|270332663|gb|EFA43449.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361]
          Length = 847

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 39/164 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           + ++Q    Q  A +       V A AG+GKT +L  ++  LL      P  +L LT T 
Sbjct: 6   EFLAQLNDSQREAVEYCDGPQLVIAGAGAGKTRVLTYKIAWLLEHHGMKPWNILALTFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +++                           M +AR+L           +
Sbjct: 66  KAAKEMKQRIGQLVG--------------------------MERARYL-----------Q 88

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++         S F I DE  S+ LI+   K+ 
Sbjct: 89  MGTFHSVFAKILRMEARNVGYGSDFTIYDEMDSRSLIKNIVKAM 132


>gi|150024958|ref|YP_001295784.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771499|emb|CAL42968.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum
           JIP02/86]
          Length = 777

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 54/157 (34%), Gaps = 37/157 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            +++Q           V A AGSGKT +L  R+  L+  N     +L LT T  AA EM 
Sbjct: 9   NEAQQAPVLQKDGPMIVIAGAGSGKTRVLTVRIANLMSQNVDAFNILALTFTNKAAREMK 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +I+      +                                     L + T H+ 
Sbjct: 69  KRIADIVGNAEAKN-------------------------------------LWMGTFHSV 91

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              I++    +    S+F I D + S +L+    K  
Sbjct: 92  FARILRSEADKLGYPSNFTIYDAQDSVRLLGAIIKEM 128


>gi|218258215|ref|ZP_03474617.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225664|gb|EEC98314.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1075

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 6/206 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AG+GKTH L    L LL         +L +T T  A  EM  R+++ +   +      
Sbjct: 7   ASAGAGKTHKLTGEYLTLLFTGPGAFRRILAVTFTNKATDEMKTRIVDELYNLASGRKSD 66

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              E+              +A  +LI IL       + TI  F +  M+ F  E  +   
Sbjct: 67  Y-VELLTSTYSLTEDQVRKQAAKILIDILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE-TLISDIIS-N 214
           + I  E   + ++  A  + L+ +    +++L        E   +   E  L  DI++ +
Sbjct: 126 YGI--EMDQELVLTTAIDNLLSDLEKPESKDLLGWLLRFAEDKIENGGEWNLRKDIMALS 183

Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240
           R   K  +  FS    R I +K    
Sbjct: 184 REVFKESYKAFSEAVGRDIEDKKALD 209


>gi|199597352|ref|ZP_03210783.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|199591868|gb|EDY99943.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
          Length = 750

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +  ++  ++E +LA++      + A AGSGKT +L  R+  L+   N +P  +L +T T
Sbjct: 6   ALKGMNDKQAEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                       E    +
Sbjct: 64  NKAAREMRERVGKLVDP-------------------------------------EIARDI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++   +      F IAD  +   L     K  LA   LD      K+
Sbjct: 87  WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142

Query: 192 FYEILEISNDEDIE 205
               +  + +E I+
Sbjct: 143 ILGAISGAKNELID 156


>gi|304389059|ref|ZP_07371104.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC
           13091]
 gi|304336989|gb|EFM03178.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC
           13091]
          Length = 735

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134


>gi|301066102|ref|YP_003788125.1| superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
 gi|300438509|gb|ADK18275.1| Superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
          Length = 751

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +  ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T
Sbjct: 6   ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++ A                                     E    +
Sbjct: 64  NKAAREMRERVGKLVDA-------------------------------------EIARDI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++   +      F IAD  +   L     K  LA   LD      K+
Sbjct: 87  WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142

Query: 192 FYEILEISNDEDIE 205
               +  + +E +E
Sbjct: 143 ILGAISSAKNELVE 156


>gi|295426521|ref|ZP_06819171.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM
           11664]
 gi|295063889|gb|EFG54847.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM
           11664]
          Length = 749

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            SE   L      ++           V A AGSGKT +L +R+  L+  N  +P  +L +
Sbjct: 1   MSEESILAGLNPQQKQAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEKNNVNPWNILAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R  +++   +                                      
Sbjct: 61  TFTNKAANEMREREQKLLGPAAE------------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++   + N + +F+IAD  +   L++  +K  
Sbjct: 84  -SIWMSTFHALCVRILRRDADKINYSHNFSIADSAEQLTLVKHIEKDL 130


>gi|237733547|ref|ZP_04564028.1| ATP-dependent deoxyribonuclease subunit A [Mollicutes bacterium D7]
 gi|229383380|gb|EEO33471.1| ATP-dependent deoxyribonuclease subunit A [Coprobacillus sp. D7]
          Length = 1233

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 24/172 (13%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           I+ ++  + E ++      S  VSA AGSGKT ILV R++ L+     +   LL LT T 
Sbjct: 3   INSLNDGQYEAVV--TRGCSILVSAPAGSGKTKILVNRIMALIEDDGYNVDQLLVLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R+   +       DE L  +I K     P +  + K + LL           
Sbjct: 61  AAALEMKQRLQVAL-------DERLQEDINK-----PLEQHLLKQKQLLPKAY------- 101

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +   H FC  +++Q+    N+ S F I        +  +   + + +   D 
Sbjct: 102 ITNFHGFCSTLLKQYGYLINLNSKFDIC--TDPSLIKHQILDNCIETWAEDQ 151


>gi|78223920|ref|YP_385667.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
 gi|78195175|gb|ABB32942.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
          Length = 678

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +DL +    ++  A        V A AGSGKT ++  R+  LLL        +L +T T
Sbjct: 1   MLDLSTLNPPQRAAAEHTEGPLLVLAGAGSGKTRVITYRIGHLLLDKKVKAEDILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV E++                                           G+
Sbjct: 61  NKAAGEMKERVRELVGRGKAK-------------------------------------GM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I+++         +F+I        LI +A +  
Sbjct: 84  VISTFHSLGVRILRRDIERLGYKKNFSIYTTSDQIGLIRQAMREV 128


>gi|332177326|gb|AEE13016.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707]
          Length = 789

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 40/188 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +DL +  ++++         A V A AGSGKT ++  ++  L+    +P  L  LT T 
Sbjct: 1   MVDLTALNEAQRAAVVYNEGPALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV +++                                            L+
Sbjct: 61  KAAGEMRSRVSDMLGESI-------------------------------------AYRLR 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  I++++      +  ++I D   +K LI    K      + D N    +  
Sbjct: 84  MGTFHAICGRILRRYAPLLGYSQDYSIYDTSDTKALIRNCIKEL---DLSDKNYTPTRVL 140

Query: 193 YEILEISN 200
             I +  N
Sbjct: 141 KRISDAKN 148


>gi|330431031|gb|AEC16090.1| exonuclease V beta subunit [Gallibacterium anatis UMN179]
          Length = 1199

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 76/180 (42%), Gaps = 19/180 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRV 82
            ++  + A+AG+GKT+ +V   LRLLL               +L +T T+ A  E+  R+
Sbjct: 13  AQNNIIEASAGTGKTYTMVTLYLRLLLQAGENNFPTPLDIEQILVVTFTRDATRELRQRI 72

Query: 83  LEIITAWSHL-------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E   +W  L        D+    +   +      +  ++ A   L    E      + T
Sbjct: 73  RERTQSWLKLLESYQQNRDKSEIKDNELLALLPYLEDHLALAIQRLSFACEYIDKAAIFT 132

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE---EAKKSTLASIMLDNNEELKKAF 192
           IH FC+ I++Q+  ++ +   F    E+  ++L +   +  +    SI  +  + +++ F
Sbjct: 133 IHGFCQRILRQYAFDSGLGFKFE-LSEQNQEQLRQVNYQLWRDKFYSISAEQAQIVRQVF 191


>gi|146276730|ref|YP_001166889.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554971|gb|ABP69584.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 783

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 45/193 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  + E +LA D      + A AG+GKT  L  R++ LL +  A P+ +L +T T
Sbjct: 28  YLEDLNPAQREAVLALD--GPVLMLAGAGTGKTKALTARIVHLLDSGRARPNEILAVTFT 85

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++     +                                       
Sbjct: 86  NKAAREMKDRVARMLGQVEGMP-------------------------------------- 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+    I+++      + S+F I D +   +L+++     + +  +D      + 
Sbjct: 108 WMGTFHSISVKILRRHAELVGLKSNFTILDTDDQLRLLKQ----LIVAANIDEKRWPARM 163

Query: 192 FYEILEISNDEDI 204
              +++   +   
Sbjct: 164 LAGLIDHWKNRAW 176


>gi|193216394|ref|YP_001997593.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
 gi|193089871|gb|ACF15146.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
          Length = 765

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 41/223 (18%)

Query: 16  LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+    +EQ  A + T+    + A AGSGKT ++  R+  ++   N  P+ +L LT T  
Sbjct: 18  LLKSLNTEQKKAVETTKGPVMIIAGAGSGKTRVITFRIAYIINKENCAPNQILALTFTNK 77

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV EI+   S                                       GL +
Sbjct: 78  AANEMRSRVEEILGTGSTR-------------------------------------GLWI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAF 192
            T H+    +++Q       TS + I D + SK LI++      +A+ +L  N    K  
Sbjct: 101 GTFHSNFARLLRQHADRLGFTSDYTIYDADDSKNLIKQIITELGIATDVLAPNAVQGKIS 160

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
                +   E +    SD IS +TA ++ + +   L +   ++
Sbjct: 161 MAKNRLVTPEQMSQNASDFISEKTA-EVFYKYNERLQKNNALD 202


>gi|297622053|ref|YP_003710190.1| DNA helicase [Waddlia chondrophila WSU 86-1044]
 gi|297377354|gb|ADI39184.1| DNA helicase [Waddlia chondrophila WSU 86-1044]
          Length = 712

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 45/183 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + +Q   +       V A AGSGKT ++  R+  L+ +    S +L LT T  AA EM 
Sbjct: 8   NEPQQDAVNTFNGPLLVLAGAGSGKTRVVTYRIAALIESGVPASQILGLTFTNKAAGEMQ 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +I  +                                            + T H+ 
Sbjct: 68  ERIRKIANSHVL-----------------------------------------ISTFHSL 86

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              I+++   E    S F I DE+   KL+    K+ L  + + + +   K F  ++  +
Sbjct: 87  GARILRESIHELGYRSDFTIYDEDDVLKLL----KACLEELKIRDKKMEPKVFRSLISKA 142

Query: 200 NDE 202
            ++
Sbjct: 143 KNQ 145


>gi|256751132|ref|ZP_05492014.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750038|gb|EEU63060.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 119

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 25/134 (18%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75
            T+ ++   +    +  V+A AGSGKT +LV+R++ L+    +P     LL +T T AAA
Sbjct: 5   WTEEQKQAITTRGSNLLVAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ E + A               I  + P    ++    LL           + T
Sbjct: 65  SEMRERIAEALIA---------------ILDQNPEDKRLANQLTLL-------NKATITT 102

Query: 136 IHAFCEAIMQQFPL 149
           IH+FC  +++    
Sbjct: 103 IHSFCLEVVRNNFF 116


>gi|91977214|ref|YP_569873.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91683670|gb|ABE39972.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
          Length = 688

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 16  LISQTKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            +     EQ  A +      P     V A AGSGKT+ L  RV  L++  A P  +L +T
Sbjct: 7   YLDGLNPEQRCAVEHGVGAGPCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMT 66

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            ++ AAAEM+ RV  I               ++                           
Sbjct: 67  FSRRAAAEMTRRVERIARRVMGDGARGGYGALS--------------------------- 99

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                T H     ++++      +   F I D E S  L+   +   
Sbjct: 100 --WAGTFHGIGARLLREHAERIGLDPAFTIHDREDSADLMNLVRHDL 144


>gi|325694248|gb|EGD36164.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK150]
          Length = 762

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 45/193 (23%)

Query: 16  LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++     Q  A   T+    + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 4   LLNGMNDRQAEAVQTTKGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R                                   A  L     +      +
Sbjct: 64  AAREMRER-----------------------------------AEKLKTEAQDCL----I 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A  
Sbjct: 85  ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 140

Query: 194 EILEISNDEDIET 206
             +  + ++ I+ 
Sbjct: 141 GTISNAKNDLIDE 153


>gi|325137063|gb|EGC59659.1| DNA helicase II [Neisseria meningitidis M0579]
 gi|325202934|gb|ADY98388.1| DNA helicase II [Neisseria meningitidis M01-240149]
 gi|325207267|gb|ADZ02719.1| DNA helicase II [Neisseria meningitidis NZ-05/33]
          Length = 735

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPVDVR--------------------------------------AMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134


>gi|313886343|ref|ZP_07820068.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924212|gb|EFR34996.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 785

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 40/188 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +DL +  ++++         A V A AGSGKT ++  ++  L+    +P  L  LT T 
Sbjct: 1   MVDLTALNEAQRAAVVYNEGPALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV +++                                            L+
Sbjct: 61  KAAGEMRSRVSDMLGESI-------------------------------------AYRLR 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  I++++      +  ++I D   +K LI    K      + D N    +  
Sbjct: 84  MGTFHAICGRILRRYAPLLGYSQDYSIYDTSDTKALIRNCIKEL---DLSDKNYTPTRVL 140

Query: 193 YEILEISN 200
             I +  N
Sbjct: 141 KRISDAKN 148


>gi|210635292|ref|ZP_03298488.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279]
 gi|210158453|gb|EEA89424.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279]
          Length = 1197

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 50/197 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-------------- 62
           I     ++ +        +VSA AGSGKT  L QR++  L   + P              
Sbjct: 4   IKLDAKQERIVKTLEGPLFVSAGAGSGKTFTLTQRIMYALRPGSKPQGQWADPQVPEPFL 63

Query: 63  ---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
                +L +T T+ AA E+  R+       + L DE + AE  K+               
Sbjct: 64  DSIDQVLAITFTEKAAEELKERIR------AALIDEGMDAEAAKVDN------------- 104

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                        + TIH  C  I++   L+  +   F +A+  +   L   A +  L  
Sbjct: 105 -----------AWISTIHGMCSRIIRAHALDLGLDPAFGVAEYAE--DLKRAAVEHVLRR 151

Query: 180 IMLDNNEELKKAFYEIL 196
            + + +     A+ ++L
Sbjct: 152 AIAE-DATGAGAYDDLL 167


>gi|162448187|ref|YP_001621319.1| DNA helicase II [Acholeplasma laidlawii PG-8A]
 gi|161986294|gb|ABX81943.1| DNA helicase II [Acholeplasma laidlawii PG-8A]
          Length = 703

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 42/170 (24%)

Query: 11  SETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            +  + + Q   +Q   A+  +   +V A AG+GKT  L  R+  L+      P ++L +
Sbjct: 1   MKMTNWLEQLNPQQKKAATHISGPLFVVAGAGTGKTRTLTTRIAYLIEELGVAPDSILAV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R++E+   ++  +                                   
Sbjct: 61  TFTNKAAREMKERIVEMAGPYATNT----------------------------------- 85

Query: 129 GGLKVQTIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T HAF   ++++    L+   T +F I DE+ +K ++ +  K  
Sbjct: 86  ---WIYTFHAFGVKVLRRDIEHLKMGYTVNFNIIDEDDAKAMVRKIIKDL 132


>gi|163789389|ref|ZP_02183828.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7]
 gi|159875243|gb|EDP69308.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7]
          Length = 750

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
             ++ ++  + + ++ +       + A AGSGKT +L  R+  L+   N +P  +L +T 
Sbjct: 6   NLLNGMNPKQKDAVVCT--QGPLLIMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++                                            
Sbjct: 64  TNKAAKEMKERVTRLMKEGG--------------------------------------SD 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + V T H+ C  I+++       T  F I+D  + + L++   K 
Sbjct: 86  VWVSTFHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILKE 130


>gi|319404491|emb|CBI78098.1| DNA helicase II [Bartonella rochalimae ATCC BAA-1498]
          Length = 815

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++    +      V A AG+GKT +L  R+  +L    AHP  +L +T T  AA EM
Sbjct: 47  NPEQKQAVINTEGPVLVLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEM 106

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E++                                              + T H+
Sbjct: 107 KTRIGELVGETVENMP-------------------------------------WLGTFHS 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F I D +   +L+++     + +  LD+     +    +++ 
Sbjct: 130 TGAKILRRHAELVGLKSNFTILDRDDVIRLLKQ----LIQAEGLDDKRWPARNLAMMIDS 185

Query: 199 SNDEDI 204
             ++ +
Sbjct: 186 WKNQGL 191


>gi|218780684|ref|YP_002432002.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
 gi|218762068|gb|ACL04534.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
          Length = 638

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 58/165 (35%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I         Q  A         V A AGSGKT  L  RV RL+ + A P+ +L LT T+
Sbjct: 5   IQYEKDLNESQYEAVTTLEGPMLVIAGAGSGKTRTLTYRVARLVDSGAPPARILLLTFTR 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+ EM                                   + +A  LL    +   G  
Sbjct: 65  KASEEM-----------------------------------LRRAGVLLGMDCDDVAG-- 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
             T H+F   +++++  +      F I D    + LI+  KK  +
Sbjct: 88  -GTFHSFSHQMLRRYAFKLGFDPGFVILDRPDCEALIDRLKKELV 131


>gi|147678864|ref|YP_001213079.1| superfamily I DNA/RNA helicase [Pelotomaculum thermopropionicum SI]
 gi|146274961|dbj|BAF60710.1| superfamily I DNA and RNA helicases [Pelotomaculum
           thermopropionicum SI]
          Length = 710

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 44/190 (23%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL+SQ   +Q+ A +       V A AGSGKT +L  RV  LL      P  +L +T T
Sbjct: 1   MDLLSQLNPDQVAAVTHGEGPLLVLAGAGSGKTRVLTCRVAYLLKEFKVLPHQILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                       ET   L
Sbjct: 61  NKAAGEMRERVGALVP--------------------------------------ETARDL 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  I+++         +F I D +    ++++  K     + LD+ +   +A
Sbjct: 83  WICTFHAACLRILRRQESFYGRDRNFVIYDADDQLTVLKDCIK----ELKLDDKKHPPRA 138

Query: 192 FYEILEISND 201
               +  + +
Sbjct: 139 VAAAISQAKN 148


>gi|153002977|ref|YP_001377302.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152026550|gb|ABS24318.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 779

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 45/177 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  + E +L  D      V A AGSGKT ++V R+ RL+      P  +L +T T
Sbjct: 7   LLEGLNDAQREAVLHGD--GPLLVLAGAGSGKTRVIVHRIARLVRDERVMPWHVLAVTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                            L
Sbjct: 65  NKAAGEMKDRLEALLGT--------------------------------------QASEL 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
            VQT HAF    +++    A +   FAI D++   +      K     + +++ E L
Sbjct: 87  WVQTFHAFGARFLRREAARAGLPPSFAIYDDDDQIR----VVKRIFQELRVEDGEPL 139


>gi|313835931|gb|EFS73645.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA2]
 gi|314927226|gb|EFS91057.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL044PA1]
 gi|314970659|gb|EFT14757.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA3]
 gi|328906126|gb|EGG25901.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. P08]
          Length = 810

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 40/163 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++     Q  A         V A AGSGKT +L +R+  L+     HP ++L +T T 
Sbjct: 40  DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV++++   +                                        + 
Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           V T H+    +++       I+ +F+I D+  +K+L+    + 
Sbjct: 122 VSTFHSAAVRMLRTDIDRLGISRNFSIYDDTDAKRLVTLVTRD 164


>gi|262276890|ref|ZP_06054683.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114]
 gi|262223993|gb|EEY74452.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114]
          Length = 742

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 40/179 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           L S    ++L  S+      V A AGSGKT +L  R+  L+         +LC+T T  A
Sbjct: 5   LNSLNNQQKLAVSNTEGPLQVLAGAGSGKTKVLTSRIAYLIQQKKCFGQQILCVTFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  RVL+++ + S                                          + 
Sbjct: 65  ASEMRERVLKLVNSKSVAFP-------------------------------------WLG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           T H+ C  ++++      +  +F I D     KLI+    +   +I +  N   + AFY
Sbjct: 88  TFHSICNKMLRKNSEAVGLKPNFTIIDTLDQIKLIKNILSA--ENIDIKKNPPKQIAFY 144


>gi|118602354|ref|YP_903569.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567293|gb|ABL02098.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 718

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 44/199 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
             SE  + ++  +  Q +  +  ++A + A AGSGKT +L  R+  L+   +     +L 
Sbjct: 2   NLSEITNDLNDKQC-QSVTFNNEKNALILAGAGSGKTRVLTHRIAYLITQKDIRIDAILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+                                     LL   +++
Sbjct: 61  VTFTNKAATEMRERLS-----------------------------------TLLRRPIQS 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              + + T H+    +++    ++ +TS F I D +   ++     K  +    +D ++ 
Sbjct: 86  ---MWMGTFHSLAHRLLRTHYEKSKLTSGFQILDAQDQFRI----VKRLMKENSIDESKF 138

Query: 188 LKKAFYEILEISNDEDIET 206
             K     +    +EDI  
Sbjct: 139 PIKKVQWFINNQKNEDIRA 157


>gi|255020481|ref|ZP_05292546.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC
           51756]
 gi|254970091|gb|EET27588.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC
           51756]
          Length = 1185

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 14/164 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-------STLLCLTHTKAAAAEMSHRVL 83
             SA + A+AG+GKT+ +    LRLLL +  P         +L +T T+AA  E+  R+ 
Sbjct: 13  QGSALIEASAGTGKTYTIATLYLRLLLGHGEPATPPRQPREILVMTFTRAATEELRERIA 72

Query: 84  EIITA-----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +                 A + ++    P+ +  + A   L     +     + TI A
Sbjct: 73  LRLYETITALREGAPPASSDALLQRLLRDYPDPATRAAAIIRLENAFNSVDEASIHTIDA 132

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           +C  ++++  L         I     S  L   A +      + 
Sbjct: 133 WCHRVLREHALATGHDPEAEIL--TDSAPLRIRAVQDFWRREIY 174


>gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c [Synechococcus elongatus PCC 6301]
 gi|56685361|dbj|BAD78583.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1061

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 42/215 (19%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAA 76
              EQ  A     S  V+A AG+GKT +L QR L  L     +  P  ++ LT T+ AAA
Sbjct: 3   LTEEQRQAVQAAGSVAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKAAA 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ + +                    K P++SD           L      ++ T 
Sbjct: 63  ELRSRIRKAVG------------------NKWPDRSDW----------LAEVEAAQISTF 94

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+ C  I ++ P  A   + F I D+   K   +        +++    +EL  + ++++
Sbjct: 95  HSLCARICREHPAAAGQPADFTILDDLAGKLWQQ--------TVLTAAMQELDPSCFDVM 146

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
           + S   +   L+  ++ +    + +    S  WR 
Sbjct: 147 DYS---EWRPLLETLLDDPVRSQALLAVESEQWRE 178


>gi|269218850|ref|ZP_06162704.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211961|gb|EEZ78301.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 831

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
            S    +++    +QL A +       V A AGSGKT +L  R+  L+ +  A P  +L 
Sbjct: 2   DSRVQRIVAGLNPQQLEAVTHSGAPLLVVAGAGSGKTRVLTSRIGYLIASGRAAPGQILA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+   +   +  +                                  
Sbjct: 62  ITFTNKAAREMRERLESALGGSAIRT---------------------------------- 87

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + V T H+ C +I++       + S F I D + +++L++   + 
Sbjct: 88  ---MWVSTFHSACVSILRSEHDALGMRSTFTIYDAQDAQRLMKLVCRE 132


>gi|332075466|gb|EGI85935.1| recombination helicase AddA [Streptococcus pneumoniae GA41301]
          Length = 1216

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSAQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + ++E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLILE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|239998017|ref|ZP_04717941.1| UvrD [Neisseria gonorrhoeae 35/02]
 gi|240113875|ref|ZP_04728365.1| UvrD [Neisseria gonorrhoeae MS11]
 gi|240116607|ref|ZP_04730669.1| UvrD [Neisseria gonorrhoeae PID18]
 gi|240124760|ref|ZP_04737646.1| UvrD [Neisseria gonorrhoeae SK-92-679]
 gi|268593866|ref|ZP_06128033.1| DNA helicase II [Neisseria gonorrhoeae 35/02]
 gi|268599941|ref|ZP_06134108.1| DNA helicase II [Neisseria gonorrhoeae MS11]
 gi|268602276|ref|ZP_06136443.1| DNA helicase II [Neisseria gonorrhoeae PID18]
 gi|268683334|ref|ZP_06150196.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679]
 gi|268547255|gb|EEZ42673.1| DNA helicase II [Neisseria gonorrhoeae 35/02]
 gi|268584072|gb|EEZ48748.1| DNA helicase II [Neisseria gonorrhoeae MS11]
 gi|268586407|gb|EEZ51083.1| DNA helicase II [Neisseria gonorrhoeae PID18]
 gi|268623618|gb|EEZ56018.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679]
          Length = 735

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R   +I                                            + 
Sbjct: 69  KAAKEMQTRFGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|240015007|ref|ZP_04721920.1| UvrD [Neisseria gonorrhoeae DGI18]
 gi|240122076|ref|ZP_04735038.1| UvrD [Neisseria gonorrhoeae PID24-1]
 gi|254494631|ref|ZP_05107802.1| DNA helicase II [Neisseria gonorrhoeae 1291]
 gi|226513671|gb|EEH63016.1| DNA helicase II [Neisseria gonorrhoeae 1291]
          Length = 735

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R   +I                                            + 
Sbjct: 69  KAAKEMQTRFGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|111657164|ref|ZP_01407943.1| hypothetical protein SpneT_02001617 [Streptococcus pneumoniae
           TIGR4]
          Length = 1177

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSAQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + ++E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLILE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|257452062|ref|ZP_05617361.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R]
 gi|257466139|ref|ZP_05630450.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917297|ref|ZP_07913537.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317058610|ref|ZP_07923095.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R]
 gi|313684286|gb|EFS21121.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R]
 gi|313691172|gb|EFS28007.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 717

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 45/193 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  + E   A+       + A AGSGKT  +  R+  ++      P  +L +T T
Sbjct: 3   LLEKLNDKQRE--AAATVEGPLLILAGAGSGKTRTITYRIAHMIEELGIPPYLILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV+ +I   +                                         
Sbjct: 61  NKAAKEMKERVISLIGEEAE--------------------------------------RA 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+F   +++ +  +    ++F I D E  K++I    K  +  + L N +  +K 
Sbjct: 83  TISTFHSFGVRLLRMYGSKLGYQANFTIYDVEDQKRII----KGIMKELNLQNTDLSEKK 138

Query: 192 FYEILEISNDEDI 204
              ++    +E +
Sbjct: 139 LASLISKLKEEGV 151


>gi|126741390|ref|ZP_01757064.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6]
 gi|126717526|gb|EBA14254.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6]
          Length = 794

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 44/195 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  ++ ++  + E +   +      + A AG+GKT  L  R++ LL    A  + +L +T
Sbjct: 25  TPYLEGLNPAQREAVECLE--GPVLMLAGAGTGKTKALTARIVHLLNTGSARTNEILAVT 82

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++   +                                      G
Sbjct: 83  FTNKAAREMKERVGGMLGQPAE-------------------------------------G 105

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T H+ C  ++++    A + S+F I D +   +L+++     + +  +D+     
Sbjct: 106 MPWLGTFHSICVKLLRRHAELAGLKSNFTILDTDDQIRLLKQ----LIKAEGIDDKRWPA 161

Query: 190 KAFYEILEISNDEDI 204
           +    I++   +  +
Sbjct: 162 RMLANIIDDWKNRAL 176


>gi|73539989|ref|YP_294509.1| UvrD/REP helicase [Ralstonia eutropha JMP134]
 gi|72117402|gb|AAZ59665.1| UvrD/REP helicase [Ralstonia eutropha JMP134]
          Length = 725

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 31/163 (19%)

Query: 16  LISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
            +S+   EQ  A +        + A AGSGKT+ L  RV  L+L  A P  +L LT ++ 
Sbjct: 48  YLSRLNPEQRAAVEHHSDGPLLIIAGAGSGKTNTLAHRVAHLVLNGADPRRILLLTFSRR 107

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV  I+      +     A +                                
Sbjct: 108 AAAEMGRRVERIVDQALGTNTGAGRAALQ-----------------------------WS 138

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA    +++++     ++  F I D   +  L+   +   
Sbjct: 139 GTFHAIGARLLREYAETLGLSPAFTICDRGDAADLMHVVRHDL 181


>gi|227486420|ref|ZP_03916736.1| ATP-dependent exoDNAse beta subunit [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235601|gb|EEI85616.1| ATP-dependent exoDNAse beta subunit [Anaerococcus lactolyticus ATCC
           51172]
          Length = 1121

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 25/194 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           +  T  ++    +  ++  VSA AGSGKT +LV RV+ +++        ++ +T T  +A
Sbjct: 4   LRLTDGQRTAIYERDKNIIVSAAAGSGKTMVLVNRVISMMVEEGIDIDKMIIVTFTNKSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  ++ E +   +   D        K+                           +++T
Sbjct: 64  QDMKDKIREALEKRATDFDPAFIKRQFKLLKL-----------------------AQIKT 100

Query: 136 IHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           +H+FC  ++++     + ++ +F +  +   K  + +A            + +       
Sbjct: 101 LHSFCSDMLRENFYYLDKLSPNFKVMPDSTGKIYMADAIDEVFDRQYEKMDPDFVYFLQN 160

Query: 195 ILEISNDEDIETLI 208
                +D + + +I
Sbjct: 161 FSGERSDYNAKQII 174


>gi|157363798|ref|YP_001470565.1| UvrD/REP helicase [Thermotoga lettingae TMO]
 gi|157314402|gb|ABV33501.1| UvrD/REP helicase [Thermotoga lettingae TMO]
          Length = 627

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 83/224 (37%), Gaps = 42/224 (18%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           D + Q   EQ  A      RS  + A  GSGKT ++  ++L LL     PS +L +T T+
Sbjct: 3   DYLQQLDDEQRTAVLKSAGRSIII-AGPGSGKTRVITYKLLHLLKTGIKPSEILLVTFTR 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R                                   AR L    LE   G+ 
Sbjct: 62  AAANEMIDR-----------------------------------ARMLTGIDLE---GIT 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H  C  I++++  +  +  +F I DEE SK LI+  +   L       +       
Sbjct: 84  AGTFHHICNLILRRYARKVGLFPNFTILDEEDSKSLIKHVRTMVLERTGEIKHFPSHGVL 143

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +I   + +  + TL S ++               ++R   IEK
Sbjct: 144 QKIFSYATN-TMSTLHSALLKINPKYIDYEKIIEDIYREYTIEK 186


>gi|15901017|ref|NP_345621.1| exonuclease RexA [Streptococcus pneumoniae TIGR4]
 gi|15903084|ref|NP_358634.1| exonuclease RexA [Streptococcus pneumoniae R6]
 gi|116515444|ref|YP_816490.1| exonuclease RexA [Streptococcus pneumoniae D39]
 gi|81531934|sp|Q97QP9|ADDA_STRPN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA; AltName:
           Full=Exonuclease RexA
 gi|81588100|sp|Q8DPR6|ADDA_STRR6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|122278624|sp|Q04KF8|ADDA_STRP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|14972629|gb|AAK75261.1| exonuclease RexA [Streptococcus pneumoniae TIGR4]
 gi|15458659|gb|AAK99844.1| First subunit of major exonuclease [Streptococcus pneumoniae R6]
 gi|116076020|gb|ABJ53740.1| exonuclease RexA [Streptococcus pneumoniae D39]
          Length = 1216

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSAQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + ++E         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLILE---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|315655665|ref|ZP_07908563.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333]
 gi|315489729|gb|EFU79356.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333]
          Length = 877

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +  +D ++    +    +  +    V A AGSGKT +L +R+  LL      P  +L +T
Sbjct: 59  AAIVDGLN--PEQHAAVTHESGPLLVMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAIT 116

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV  ++   +                                       
Sbjct: 117 FTNKAAAEMRQRVESLVGNAAKY------------------------------------- 139

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + V T H+ C  I++       +T  F+I D   +K L+    K
Sbjct: 140 -MWVSTFHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIK 183


>gi|242279801|ref|YP_002991930.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
 gi|242122695|gb|ACS80391.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
          Length = 707

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID  ++    Q   A+ P     V A AGSGKT  +V R+  L+     P ++L +T T
Sbjct: 1   MIDFKNELNPAQYEAATHPQGPVLVIAGAGSGKTRTIVYRLAWLVEQGIPPESILLMTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM  R   I+                                           G 
Sbjct: 61  RKAAQEMLQRTELILGR--------------------------------------NLHGT 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           +  T HAF  ++++Q   E    +   + D   S+  ++E K   
Sbjct: 83  QGGTFHAFAYSVLRQNAAEIGFPNGITLMDRSDSEAAVKEVKDQL 127


>gi|323139776|ref|ZP_08074812.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322394980|gb|EFX97545.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 687

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 38/167 (22%)

Query: 16  LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +  +EQ  A +         P     V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 3   YLEKLNAEQRQAVEHGVWDKRCAPGGPLLVIAGAGSGKTNTLAHRVAHLIVNGADPRRIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T ++ AAAEM+ RV  I       S  IL                             
Sbjct: 63  LMTFSRRAAAEMTRRVERICAEALGASAGIL----------------------------- 93

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T G     T +     +++ +  E  +T  F I D E +  L+   +
Sbjct: 94  TNGLAWAGTFNGVGARLLRDYAGEIGLTPDFTIHDREDAADLMNLVR 140


>gi|163758971|ref|ZP_02166057.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
 gi|162283375|gb|EDQ33660.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
          Length = 840

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            ++    EQ  A +       V A AG+GKT +L  R+  +L    A PS +L +T T  
Sbjct: 55  YLAGLNPEQADAVESIEGPVLVLAGAGTGKTRVLTTRIAHILNLGLAFPSQILSVTFTNK 114

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                          G   +
Sbjct: 115 AAREMKERIGVLVGGAVE-------------------------------------GMPWL 137

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    ++++    AN+ S F I D +   +L+++     + +  +D+     + F 
Sbjct: 138 GTFHSIGVKLLRRHAELANLRSDFTILDTDDVIRLVKQ----LIQAEGIDDKRWPARQFA 193

Query: 194 EILEISNDEDI 204
           ++++   ++ +
Sbjct: 194 QMIDGWKNKGL 204


>gi|239631845|ref|ZP_04674876.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239526310|gb|EEQ65311.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 751

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +  ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T
Sbjct: 6   ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++ A                                     E    +
Sbjct: 64  NKAAREMRERVGKLVDA-------------------------------------EIARDI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++   +      F IAD  +   L     K  LA   LD      K+
Sbjct: 87  WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142

Query: 192 FYEILEISNDEDIE 205
               +  + +E ++
Sbjct: 143 ILGAISSAKNELVD 156


>gi|191637996|ref|YP_001987162.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|190712298|emb|CAQ66304.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|327382072|gb|AEA53548.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei LC2W]
 gi|327385216|gb|AEA56690.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei BD-II]
          Length = 751

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +  ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T
Sbjct: 6   ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++ A                                     E    +
Sbjct: 64  NKAAREMRERVGKLVDA-------------------------------------EIARDI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++   +      F IAD  +   L     K  LA   LD      K+
Sbjct: 87  WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142

Query: 192 FYEILEISNDEDIE 205
               +  + +E ++
Sbjct: 143 ILGAISSAKNELVD 156


>gi|116494556|ref|YP_806290.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116104706|gb|ABJ69848.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei ATCC 334]
          Length = 751

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +  ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T
Sbjct: 6   ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++ A                                     E    +
Sbjct: 64  NKAAREMRERVGKLVDA-------------------------------------EIARDI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++   +      F IAD  +   L     K  LA   LD      K+
Sbjct: 87  WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142

Query: 192 FYEILEISNDEDIE 205
               +  + +E ++
Sbjct: 143 ILGAISSAKNELVD 156


>gi|161507067|ref|YP_001577021.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
 gi|160348056|gb|ABX26730.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
          Length = 748

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 7   LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R  +++   +                                        + + 
Sbjct: 67  ANEMREREQKLLGPAAQ--------------------------------------NIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +   + +F+IAD  +   L++  +K  
Sbjct: 89  TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130


>gi|332180280|gb|AEE15968.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 765

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 85/230 (36%), Gaps = 68/230 (29%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
             H    + +S    EQ  A + + S   + A AGSGKT ++  ++  L+   +  P ++
Sbjct: 3   NTHPTAAEYLSVLNPEQRAAVEHSGSPLLILAGAGSGKTRVITTKIAYLIGEKDVDPYSI 62

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T TK AAAEM+ R                                   ARHL     
Sbjct: 63  LAVTFTKKAAAEMASR-----------------------------------ARHLEPRAA 87

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI---------EEAKKST 176
            T     ++T H+F    ++    EA +   F + DE+    L+         +EA ++ 
Sbjct: 88  NT----AIRTFHSFGAWFLRLHAQEAGLDPSFTVYDEDDMVTLLTKALPALSRQEASRAV 143

Query: 177 -----------------LASI-MLDNNEELKKAFYEILEISNDEDIETLI 208
                            LA I   +N  ++ +A+   L+ + + D   LI
Sbjct: 144 HKISLAKDYCLTPDSPDLAEIDAAENFPDVYRAYQNRLKETGNVDFGDLI 193


>gi|328462071|gb|EGF34244.1| ATP-dependent helicase [Lactobacillus helveticus MTCC 5463]
          Length = 745

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 7   LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R  +++   +                                        + + 
Sbjct: 67  ANEMREREQKLLGPAAQ--------------------------------------NIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +   + +F+IAD  +   L++  +K  
Sbjct: 89  TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130


>gi|300245038|gb|ADJ94112.1| UvrD helicase [Hordeum vulgare subsp. vulgare]
          Length = 1185

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 45/193 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           ++ E +  ++  + E    SD      + A  GSGKT  +V RVL LL     PS +L +
Sbjct: 299 KYYEYLHSLNDKQREA-SCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGISPSNILAM 357

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T AAA+EM  R+  ++                              A+ ++       
Sbjct: 358 TFTTAAASEMRDRIGAVVGKAV--------------------------AKEII------- 384

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------STLASIM 181
               + T H+FC  + +    +   TS F I    Q ++ I EA++         L   +
Sbjct: 385 ----ISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGDAV 440

Query: 182 LDNNEELKKAFYE 194
              + ++K +F +
Sbjct: 441 KQCDGDIKNSFKD 453


>gi|306820669|ref|ZP_07454297.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551279|gb|EFM39242.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 729

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +++    + +    +    +  + A AGSGKT ++  ++  L+   N +P  +L +T T 
Sbjct: 5   MEINKLNEMQHRAVTTTDGAILILAGAGSGKTRVITNKIAYLIEEKNVNPYNILAITFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV E+I   S                                        + 
Sbjct: 65  KAAKEMLSRVEEMIGEDSR--------------------------------------RVW 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T HAFC  +++      +  ++F I D    + LI+   ++ 
Sbjct: 87  ISTFHAFCSKVLRIEAHHLDYDNNFTIYDTTDKQTLIKNCMEAL 130


>gi|299783521|gb|ADJ41519.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum CECT 5716]
          Length = 756

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 41/168 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           ++   ++ ++  +SE +L ++      V A AGSGKT +L  R+  L+   +  P  +L 
Sbjct: 2   QNQSMLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++                                       E 
Sbjct: 60  ITFTNKAAREMKERVAKLLG--------------------------------------EA 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + V T HA C  I+++   +      F IAD  + + LI+   + 
Sbjct: 82  GNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEE 129


>gi|282851210|ref|ZP_06260575.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1]
 gi|282557178|gb|EFB62775.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1]
          Length = 730

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 39/147 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT +L +R+  L+      P  +L +T T  AA EM  RV +++   
Sbjct: 5   EGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPA 64

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +                                        + + T HA C  I+++   
Sbjct: 65  A--------------------------------------DSVWMSTFHALCVRILRRDAE 86

Query: 150 EANITSHFAIADEEQSKKLIEEAKKST 176
           +   +++F+IAD  +   LI+  +K  
Sbjct: 87  KIGYSNNFSIADSAEQLTLIKRIEKDL 113


>gi|227535467|ref|ZP_03965516.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186877|gb|EEI66944.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 751

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +  ++  +SE +LA++      + A AGSGKT +L  R+  L+   + +P  +L +T T
Sbjct: 6   ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++ A                                     E    +
Sbjct: 64  NKAAREMRERVGKLVDA-------------------------------------EIARDI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++   +      F IAD  +   L     K  LA   LD      K+
Sbjct: 87  WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142

Query: 192 FYEILEISNDEDIE 205
               +  + +E ++
Sbjct: 143 ILGAISSAKNELVD 156


>gi|294012133|ref|YP_003545593.1| DNA helicase II [Sphingobium japonicum UT26S]
 gi|292675463|dbj|BAI96981.1| DNA helicase II [Sphingobium japonicum UT26S]
          Length = 758

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 74/197 (37%), Gaps = 44/197 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           +    +  +++ + E +L+++      V A AG+GKT  L  R+  L+    A+PS +L 
Sbjct: 9   DDPAYLQGLNEPQREAVLSTE--GPVLVLAGAGTGKTAALTARLAHLIATRRAYPSEILA 66

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV  +I                                         
Sbjct: 67  VTFTNKAAREMRERVGRMIGPAVE------------------------------------ 90

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G   + T HA    ++++      + S+F I D +   +L+++     + +  +D    
Sbjct: 91  -GMPWLGTFHAIAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQ----LIQAEGIDEKRW 145

Query: 188 LKKAFYEILEISNDEDI 204
             +    +++   ++ +
Sbjct: 146 PARQLAGLIDQWKNKGL 162


>gi|255323065|ref|ZP_05364201.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae
           RM3277]
 gi|255299927|gb|EET79208.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae
           RM3277]
          Length = 931

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + +LL+ A    +  LT TK AA EM  R+++         
Sbjct: 5   LALEASAGSGKTFALSVRFIAILLSGADAREITALTFTKKAANEMKERIVQTFLRLEEKG 64

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            E+  AE+ +I G   +K    +        LE    LK+ T  +F   I++ F L   +
Sbjct: 65  AEL--AELEQILGAGRDKILAMRDARA-THFLE--SDLKIGTFDSFFVGILRSFCLNLGL 119

Query: 154 TSHFAIADE 162
           ++ F +++ 
Sbjct: 120 SADFEVSEN 128


>gi|58584193|ref|YP_203209.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625962|ref|YP_453334.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58428787|gb|AAW77824.1| DNA helicase II [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369902|dbj|BAE71060.1| DNA helicase II [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 728

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  
Sbjct: 2   DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR    +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H     +++    +A +   F + D +   +L++   ++ 
Sbjct: 84  --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 130


>gi|240081594|ref|ZP_04726137.1| UvrD [Neisseria gonorrhoeae FA19]
 gi|240124369|ref|ZP_04737325.1| UvrD [Neisseria gonorrhoeae PID332]
 gi|268597691|ref|ZP_06131858.1| DNA helicase II [Neisseria gonorrhoeae FA19]
 gi|268682996|ref|ZP_06149858.1| DNA helicase II [Neisseria gonorrhoeae PID332]
 gi|268551479|gb|EEZ46498.1| DNA helicase II [Neisseria gonorrhoeae FA19]
 gi|268623280|gb|EEZ55680.1| DNA helicase II [Neisseria gonorrhoeae PID332]
          Length = 735

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R   +I                                            + 
Sbjct: 69  KAAKEMQTRFGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|229496489|ref|ZP_04390203.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316386|gb|EEN82305.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 536

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 4/179 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           A+AG+GKT+ L    L L L         +L +T T  A  EM  R++E++   +   + 
Sbjct: 9   ASAGAGKTYTLALEYLTLALKYPEDKFRHILAMTFTNKATNEMKSRIVEVLYQLTTEREP 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
              A     +     +    +A+  L +IL      +V TI +F + +++ F  E N   
Sbjct: 69  SPLALALGERLDLSPEQITDRAQRTLRSILGDYSSFRVSTIDSFFQEVVRSFAFELNFAG 128

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
           ++ +  E   +  + +A    L S+  +   + ++  Y++ +   +      I   +SN
Sbjct: 129 NYKV--EMDQELWLHKAIVLLLHSLAEEQMSDTREWVYQLAQEEINAGRSIQIDQALSN 185


>gi|227515526|ref|ZP_03945575.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC
           14931]
 gi|227086139|gb|EEI21451.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC
           14931]
          Length = 760

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 41/168 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           ++   ++ ++  +SE +L ++      V A AGSGKT +L  R+  L+   +  P  +L 
Sbjct: 6   QNQSMLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILA 63

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++                                       E 
Sbjct: 64  ITFTNKAAREMKERVAKLLG--------------------------------------EA 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + V T HA C  I+++   +      F IAD  + + LI+   + 
Sbjct: 86  GNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEE 133


>gi|87309169|ref|ZP_01091306.1| probable helicase [Blastopirellula marina DSM 3645]
 gi|87288160|gb|EAQ80057.1| probable helicase [Blastopirellula marina DSM 3645]
          Length = 1040

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 12/199 (6%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           P +   + A+AGSGKT  L  R L +L +   P+ +L  T T+ AA E+  R++  +   
Sbjct: 3   PFQHRLIRASAGSGKTFQLSNRFLGVLASGDAPAEILATTFTRKAAGEILDRIMIRLAEA 62

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +   +++  AE+       P       A   L  + +    L+VQT+ +F   + Q F  
Sbjct: 63  ARDPNKL--AELNSFIEAAPVTPAACVAT--LRELTQQLHRLRVQTLDSFFIQVAQCFSF 118

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
           E      ++IADE    +L   A +  L     +    + +  + + +      +  L+ 
Sbjct: 119 EMGFPPGWSIADEVDDSELRINAIEELLRE---NEAALVLEIVHLMSKGETTRGVSQLML 175

Query: 210 DIISNRTALKLIFFFFSYL 228
           D  S     +    F    
Sbjct: 176 DAAS-----QFYGLFQETP 189


>gi|302684905|ref|XP_003032133.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8]
 gi|300105826|gb|EFI97230.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8]
          Length = 697

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 45/207 (21%)

Query: 14  IDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           ++ +      Q  A   DP     + A  GSGKT +L  R+  L+L +   P  +  +T 
Sbjct: 1   MEFLQALNEAQSKAVHHDPAIPLQILAGPGSGKTKVLTSRIAYLILHHKIPPYAICAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ +++                                       E    
Sbjct: 61  TNKAANEMRERLTKLLGP-------------------------------------EQTSQ 83

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +++ T HA C   ++++  +  + S+F I D +++KK+I        A +    +  LK 
Sbjct: 84  IRMGTFHALCAQFLRRYGSKIGVDSNFTICDIDEAKKIISNHLSRYKADL---KDNTLKD 140

Query: 191 AFYEILEISNDEDIETLISDIISNRTA 217
           A   +L   ++   + L SD +  R  
Sbjct: 141 A--TVLASISNAKAKGLTSDDLFRRQQ 165


>gi|125717696|ref|YP_001034829.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36]
 gi|125497613|gb|ABN44279.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 762

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|322372977|ref|ZP_08047513.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150]
 gi|321278019|gb|EFX55088.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150]
          Length = 775

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +SE +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 7   MNPLLNGMNDKQSEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 64

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R + +  A S                                      
Sbjct: 65  TFTNKAAREMRERAMALNPATSETL----------------------------------- 89

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 90  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 141

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ ++ 
Sbjct: 142 ERAILGTISNAKNDLLDE 159


>gi|260102795|ref|ZP_05753032.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM
           20075]
 gi|260083399|gb|EEW67519.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM
           20075]
          Length = 748

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 7   LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R  +++   +                                        + + 
Sbjct: 67  ANEMREREQKLLGPAAQ--------------------------------------NIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +   + +F+IAD  +   L++  +K  
Sbjct: 89  TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130


>gi|198277205|ref|ZP_03209736.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135]
 gi|198269703|gb|EDY93973.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135]
          Length = 1075

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 16/180 (8%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    +R L+ + +    +L +T T  A AEM  R+LE +   +  
Sbjct: 8   LVYKASAGSGKTFTLAVHYIRQLIEDPYAYRRILAVTFTNKATAEMKERILEQLYGIAT- 66

Query: 93  SDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           +DE     + +IQ       +     AR  L  I+      +++TI +F +++M+    E
Sbjct: 67  ADEGSDGYLKEIQKTSAKSVEEIRESAREALRHIIHDYSRFRIETIDSFFQSVMRNLARE 126

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI-----SNDEDIE 205
             + ++ +I  E  + +++ +A  + +  +     +      Y +LE       ND   +
Sbjct: 127 LELGANLSI--ELNNTEVLSDAVDAMIEKL-----DRRSPVLYWLLEYIEERIVNDRRWD 179


>gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
 gi|118571902|gb|ABL06653.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
          Length = 769

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 42/224 (18%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L +R+  L+ A       +L +T T  AAAE+
Sbjct: 16  NPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFTNKAAAEV 75

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV+ ++   +                                        + V T H+
Sbjct: 76  RERVVSLVGGRAKY--------------------------------------MWVSTFHS 97

Query: 139 FCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
            C  I++        + S+F+I D + S++L++   +     I   +   L  A   +  
Sbjct: 98  TCVRILRNQAALIKGLNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLTNAISNLKN 157

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
              D D    +SD+  +   L          ++R++   +    
Sbjct: 158 ELIDPD--RAVSDLSEDSDDLARTVASVYAEYQRRLRAANALDF 199


>gi|149198486|ref|ZP_01875531.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa
           HTCC2155]
 gi|149138492|gb|EDM26900.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa
           HTCC2155]
          Length = 1198

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 6/192 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ +    L  +L     S +L +T T+ A  E+  RV + ++       
Sbjct: 18  LIEASAGTGKTYSIANIFLHFILKGRDVSEILVVTFTEDATKELRDRVRKNLSKALLQIR 77

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             ++ E   ++          + R  L   L       + TIH FC+ ++++   E++  
Sbjct: 78  GDVTEEDPTLKAIIEIYPHQDENRRRLELALVNFDQAVISTIHGFCQRMLKENAFESH-- 135

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILEISNDEDIETLIS-D 210
           S F +       KLI+E  +  +     D+        +    ++++   + IE     D
Sbjct: 136 STFDMELVTDDSKLIDELVEDFIRIESYDHQSAFNYDAEQLKSLIKLYKGQAIEEAEEFD 195

Query: 211 IISNRTALKLIF 222
           + + +     ++
Sbjct: 196 LEARKQKFIELY 207


>gi|294786844|ref|ZP_06752098.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305]
 gi|315226480|ref|ZP_07868268.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM
           10105]
 gi|294485677|gb|EFG33311.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305]
 gi|315120612|gb|EFT83744.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM
           10105]
          Length = 901

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 39/144 (27%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             + A AGSGKT +L +R+   L   +A+PS +L +T T  AA EM  R+  +I   +  
Sbjct: 69  LLIGAGAGSGKTRVLTRRIAWALSQWHAYPSQILAITFTNKAAREMKERLGSLIGPVAET 128

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                                 + V T H+ C  I+++   +  
Sbjct: 129 --------------------------------------MWVSTFHSACVRILRRHGKDIG 150

Query: 153 ITSHFAIADEEQSKKLIEEAKKST 176
           ++S F+I D    ++L++   +  
Sbjct: 151 LSSGFSIYDTADCQRLVKLICQDF 174


>gi|257458469|ref|ZP_05623609.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580]
 gi|257444170|gb|EEV19273.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580]
          Length = 809

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 41/164 (25%)

Query: 12  ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           ET   +S    EQL A         + A AGSGKT ++  ++  L+      P ++L +T
Sbjct: 3   ETCKYLSVLNPEQLEAVCHTGSPLLILAGAGSGKTRVITTKIAWLIAEQGVRPESILAVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM+ R        + + DE  +  +                            
Sbjct: 63  FTNKAAREMAER--------ARVLDERTARSV---------------------------- 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
              ++T H+F   +++++   A ++ +F I D+E S  L+ +A 
Sbjct: 87  ---IRTFHSFGAWMLRRYAEWAGLSPNFTIYDDEDSVTLLMKAL 127


>gi|322417957|ref|YP_004197180.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M18]
 gi|320124344|gb|ADW11904.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M18]
          Length = 1116

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 10/148 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +    LRL+L      S +L +T T+AA  E+  RV + +   +   
Sbjct: 16  LIEASAGTGKTFTIAGVYLRLVLEEELDVSRILVVTFTEAATKELKERVRKKLKE-AESG 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            E  ++E   I G   + SD  KAR LL + + +     + TIH FC+ ++Q  P E+  
Sbjct: 75  FEAGASEDFLIAGLLQSSSDHHKARRLLASAVRSFDEAAIFTIHGFCQRMLQDNPFESG- 133

Query: 154 TSHFAIADEE---QSKKLIEEAKKSTLA 178
               ++ D E      K++ E  +    
Sbjct: 134 ----SLCDTELVTDQGKILTEIAQDYWR 157


>gi|223039071|ref|ZP_03609362.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus
           RM3267]
 gi|222879710|gb|EEF14800.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus
           RM3267]
          Length = 931

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + +LL+ A    +  LT TK AA EM  R+++         
Sbjct: 5   LALEASAGSGKTFALSVRFIAILLSGADAREITALTFTKKAANEMKERIVQTFLRLEEKG 64

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            E+  AE+ +I G   ++    +        LE    LK+ T  +F   I++ F L   +
Sbjct: 65  AEL--AELEQILGAGRDEILAMRDARA-THFLE--SDLKIGTFDSFFVGILRSFCLNLGL 119

Query: 154 TSHFAIADE 162
           ++ F +++ 
Sbjct: 120 SADFEVSEN 128


>gi|237749150|ref|ZP_04579630.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes
           OXCC13]
 gi|229380512|gb|EEO30603.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes
           OXCC13]
          Length = 757

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 46/223 (20%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           +     EQL A   P++SA + A AGSGKT +L  R+  LL       S ++ +T T  A
Sbjct: 5   LDNLNPEQLAAVTLPSQSALILAGAGSGKTRVLTTRIAWLLKTGQVSTSGIMAVTFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R                                      L +       G+ + 
Sbjct: 65  AKEMLSR--------------------------------------LSVMFPVNARGMWIG 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H  C  +++    +A +   F I D +          K  L +  +D+++   +    
Sbjct: 87  TFHGLCNRLLRTHYQDAALPQSFNILDSQDQLS----TVKRLLKTNNIDDDKYPPRNLVY 142

Query: 195 ILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235
            +  + +        +   +  R  ++L   +     R  +++
Sbjct: 143 FINHAKESGYRASHVEPQDDYERKMVELYSLYEDQCQREGVVD 185


>gi|21233448|ref|NP_639365.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770412|ref|YP_245174.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21115293|gb|AAM43247.1| DNA helicase II [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575744|gb|AAY51154.1| DNA helicase II [Xanthomonas campestris pv. campestris str. 8004]
          Length = 728

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  
Sbjct: 2   DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR    +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H     +++    +A +   F + D +   +L++   +S 
Sbjct: 84  --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 130


>gi|325130964|gb|EGC53691.1| DNA helicase II [Neisseria meningitidis OX99.30304]
          Length = 735

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPVDVR--------------------------------------AMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134


>gi|157151050|ref|YP_001450617.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075844|gb|ABV10527.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 762

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|316985163|gb|EFV64115.1| DNA helicase II [Neisseria meningitidis H44/76]
 gi|325141072|gb|EGC63575.1| DNA helicase II [Neisseria meningitidis CU385]
 gi|325199439|gb|ADY94894.1| DNA helicase II [Neisseria meningitidis H44/76]
          Length = 735

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134


>gi|188579666|ref|YP_001923111.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179343164|gb|ACB78576.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 798

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 11  SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            E    +S    EQ  A +       V A AG+GKT +L  R+  L+    A P  +L +
Sbjct: 38  PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM HR+  +I                                          
Sbjct: 98  TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G   + T HA    I+++      + S F I   +   +L+++     +A   +D     
Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VIADQNIDEKRWP 176

Query: 189 KKAFYEILEISNDEDI 204
            ++    ++   +  +
Sbjct: 177 ARSLAHTIDGWKNRGL 192


>gi|253998105|ref|YP_003050168.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253984784|gb|ACT49641.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 720

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 46/232 (19%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           N+    +  ++ ++  + E    + P +SA + A AGSGKT +L  R+  L+      P+
Sbjct: 2   NAQHPSTSLLEGLNDKQLE--AVTLPHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPN 59

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            LL +T T  AA EM  R+  ++                                     
Sbjct: 60  GLLAVTFTNKAAKEMLTRLSAMLPI----------------------------------- 84

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                 G+   T H  C  +++    EA + + F I D          + K  +  + +D
Sbjct: 85  ---NVRGMWAGTFHGLCNRLLRAHHREALLPATFQILDTADQLS----SIKRLMKQMNVD 137

Query: 184 NNEELKKAFYEILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRRKII 234
           + +   K     +    +E +    +    ++   ++ IF  +    +R+ +
Sbjct: 138 DEKFPPKQVMGYINSCKEEGLRANAVDAYDAHSQRMREIFEEYDRQCQREGV 189


>gi|296123691|ref|YP_003631469.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296016031|gb|ADG69270.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 700

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 28/157 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              ++  A        + A AG+GKT  LV RV  L+     P  +L LT T+ AAAEM 
Sbjct: 27  NPEQRAAAQAGPAPLLIIAGAGTGKTTTLVHRVAHLIATGIDPGEILLLTFTRRAAAEMI 86

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +++   +          I +I G+                           T HA 
Sbjct: 87  RRVEQLLAVAAKSPG------IARIHGRHVVG----------------------GTFHAI 118

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               +++F     + + F I D   ++ L+ + +   
Sbjct: 119 ATRHLREFGQYLGLDADFTILDRSDAEDLMNQLRSEL 155


>gi|184155952|ref|YP_001844292.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183227296|dbj|BAG27812.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 756

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 41/168 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           ++   ++ ++  +SE +L ++      V A AGSGKT +L  R+  L+   +  P  +L 
Sbjct: 2   QNQSMLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++                                       E 
Sbjct: 60  ITFTNKAAREMKERVAKLLG--------------------------------------EA 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + V T HA C  I+++   +      F IAD  + + LI+   + 
Sbjct: 82  GNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEE 129


>gi|15676157|ref|NP_273289.1| DNA helicase II [Neisseria meningitidis MC58]
 gi|7225454|gb|AAF40687.1| DNA helicase II [Neisseria meningitidis MC58]
          Length = 735

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134


>gi|227877012|ref|ZP_03995104.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01]
 gi|227863383|gb|EEJ70810.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01]
          Length = 753

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 12  LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R  +++   +                                        + + 
Sbjct: 72  ASEMREREQKLLGPAA--------------------------------------NDIWMS 93

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +     +F+IAD  +   L++  +K  
Sbjct: 94  TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL 135


>gi|154494054|ref|ZP_02033374.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC
           43184]
 gi|154086314|gb|EDN85359.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC
           43184]
          Length = 1075

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 6/206 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AG+GKTH L    L LL         +L +T T  A  EM  R+++ +   +      
Sbjct: 7   ASAGAGKTHKLTGEYLTLLFTGPGAFRRILAVTFTNKATDEMKTRIVDELYNLASGRKSD 66

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              E+ K            +A  +LI IL       + TI  F +  M+ F  E  +   
Sbjct: 67  Y-VELLKSAYSLTEIQVRKQAAQILIDILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE-TLISDIIS-N 214
           + I  E   + ++  A  + L+ +    +++L        E   +   E  L  DI++ +
Sbjct: 126 YGI--EMDQELVLTTAIDNLLSDLEKPESKDLLGWLLRFAEDKIESGGEWNLRKDIMALS 183

Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240
           R   K  +  FS    R I +K    
Sbjct: 184 REVFKESYKAFSEAVGRDIEDKKALE 209


>gi|302346508|ref|YP_003814806.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150979|gb|ADK97240.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 1100

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    + L++        +L +T T  A  EM  R+L  +   +H L D 
Sbjct: 11  ASAGSGKTFTLASEYITLVVKYPQDYKKILAVTFTNKATQEMKTRILSQLYGIAHKLPDS 70

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E    +   P  +    A   L  +       +VQTI AF +++++    E N+T+
Sbjct: 71  QAYYEQVLRKTGFPELTIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  I   ++  +   +A    + S+  +  EE+     + ++ + ++D
Sbjct: 131 NLRIDLNDEQVE--AQAVDELINSL--EEGEEVLTWIRDYIDKNIEDD 174


>gi|313200171|ref|YP_004038829.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312439487|gb|ADQ83593.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 720

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 46/232 (19%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           N+    +  ++ ++  + E    + P +SA + A AGSGKT +L  R+  L+      P+
Sbjct: 2   NAQHPSTSLLEGLNDKQLE--AVTLPHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPN 59

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            LL +T T  AA EM  R+  ++                                     
Sbjct: 60  GLLAVTFTNKAAKEMLTRLSAMLPI----------------------------------- 84

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                 G+   T H  C  +++    EA + + F I D          + K  +  + +D
Sbjct: 85  ---NVRGMWAGTFHGLCNRLLRAHHREALLPATFQILDTADQLS----SIKRLMKQMNVD 137

Query: 184 NNEELKKAFYEILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRRKII 234
           + +   K     +    +E +    +    ++   ++ IF  +    +R+ +
Sbjct: 138 DEKFPPKQVMGYINSCKEEGLRANAVDAYDAHSQRMREIFEEYDRQCQREGV 189


>gi|298345243|ref|YP_003717930.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235304|gb|ADI66436.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063]
          Length = 877

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +  +D ++    +    +  +    V A AGSGKT +L +R+  LL      P  +L +T
Sbjct: 59  AAIVDGLN--PEQHAAVTHESGPLLVMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAIT 116

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV  ++   +                                       
Sbjct: 117 FTNKAAAEMRQRVESLVGNAAKY------------------------------------- 139

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + V T H+ C  I++       +T  F+I D   +K L+    K
Sbjct: 140 -MWVSTFHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIK 183


>gi|148377565|ref|YP_001256441.1| ATP-dependent helicase [Mycoplasma agalactiae PG2]
 gi|148291611|emb|CAL58997.1| ATP dependent helicase [Mycoplasma agalactiae PG2]
          Length = 734

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 46/230 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + ++  + +++ ++E L   D      + A AGSGKT +L +++  L+ +    P  +L 
Sbjct: 10  QKAKIFESLNEEETEALYYFD--GPLRIIAGAGSGKTRVLTRKIAYLINVLGISPDHILA 67

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA+EMS RV +                                           
Sbjct: 68  VTFTNKAASEMSERVKQ------------------------------------YTNTKFN 91

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G  ++ T H+ C  I+++     N+ + F I D+   KK++++  K         N + 
Sbjct: 92  KGTAEISTFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDIYKEHDLVPTDSNFKN 151

Query: 188 LKKAFYEILE--ISNDEDIETLI-----SDIISNRTALKLIFFFFSYLWR 230
           L + F  +     ++DE+I   I     S+   +   +  I+ F++   +
Sbjct: 152 LTRFFSWLKNKLYASDEEIIDFINSDPESEFYGDGETVVKIYNFYNEQLK 201


>gi|251809891|ref|ZP_04824364.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874545|ref|ZP_06283430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135]
 gi|251806556|gb|EES59213.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296684|gb|EFA89193.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135]
          Length = 729

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +    +            + A AGSGKT +L  R+  LL   +  P  +L +T T  AA 
Sbjct: 7   NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM+ RV  ++   + +                                      + + T 
Sbjct: 67  EMNARVEHLVGEEAQV--------------------------------------IWMSTF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+ C  I+++      I  +F I D    K +I++  KS
Sbjct: 89  HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKS 127


>gi|326693832|ref|ZP_08230837.1| ATP-dependent DNA helicase PcrA [Leuconostoc argentinum KCTC 3773]
          Length = 748

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 40/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E I+ ++  ++E +  +       + A AGSGKT +L  R+  L+   N  P  +L +T 
Sbjct: 5   ELINGMNDKQAEAVQTT--QGPLLIMAGAGSGKTRVLTHRIAHLVKDLNVMPWRILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  +++                                      +    
Sbjct: 63  TNKAAKEMRERIGALLSE-------------------------------------DVARD 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + V T HA    I+++      ++ +F I D    + L++      
Sbjct: 86  IWVSTFHALAVRILRRDGENIGLSRNFTIIDTSAQRTLMKRVINDL 131


>gi|297568687|ref|YP_003690031.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924602|gb|ADH85412.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1303

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 8/207 (3%)

Query: 26  LASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL 83
            A+ P+     + A+AG+GKT+ +    LR +L    P   +L L+ T+AA AE+  R+ 
Sbjct: 9   AAALPSAPLQLIEASAGTGKTYSITSLYLRFILEQELPVEKILVLSFTEAATAELHGRLR 68

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             + A +    +        +Q    N     +   LL   +       V TIH+FC  +
Sbjct: 69  ARLQAAATAFQQGGGTNDPFLQELVRNSRRPERDLRLLQRAVSDIDQAAVTTIHSFCHRV 128

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +QQ   E+ +   F +    +    I+E     LA++   ++  L   +  +  ++   +
Sbjct: 129 LQQGAFESGMP--FELELLGEVTPFIDELIYDFLATLHHRDDPRLLALWRRVYSLT---E 183

Query: 204 IETLISDIISNRTALKLIFFFFSYLWR 230
           +  L+ + + +R    L+        R
Sbjct: 184 LRALVREGLRHR-HFPLLTGVSEQPHR 209


>gi|21244868|ref|NP_644450.1| DNA-dependent helicase II [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110576|gb|AAM38986.1| DNA helicase II [Xanthomonas axonopodis pv. citri str. 306]
          Length = 730

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  
Sbjct: 4   DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR    +   S                                     
Sbjct: 62  VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 85

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H     +++    +A +   F + D +   +L++   ++ 
Sbjct: 86  --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 132


>gi|322385749|ref|ZP_08059393.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC
           51100]
 gi|321270487|gb|EFX53403.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC
           51100]
          Length = 762

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AAALNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ I+ 
Sbjct: 136 ERAILGTISNAKNDLIDE 153


>gi|150009169|ref|YP_001303912.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503]
 gi|149937593|gb|ABR44290.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503]
          Length = 1055

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AG+GKTH L    L LL +       +L +T T  A  EM  R+++ +   +      
Sbjct: 7   ASAGAGKTHKLTGEYLMLLFSQPGVYRRILAVTFTNKATDEMKTRIVQELYHLAS-GRAS 65

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              ++         +    +AR +L+ IL       + TI  F +  M+ F  E  +   
Sbjct: 66  DYIQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214
           + I  E   + ++ EA  + LA +    +++L        E    D    +L  DI+S +
Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAEDKIEDGGGWSLRQDIMSLS 183

Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240
           R   K  +  FS    + I +K    
Sbjct: 184 REVFKESYKAFSEEVGKDIADKQALD 209


>gi|119896636|ref|YP_931849.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
 gi|119669049|emb|CAL92962.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
          Length = 700

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 36/170 (21%)

Query: 13  TIDLISQTKSEQL-------LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            +D ++  + E +          D      V A AGSGKT+ L  RV  L+   A P  +
Sbjct: 15  YLDRLNAAQREAVEYGVRGNAGRDIPGPLLVIAGAGSGKTNTLAHRVAHLIANGADPGRI 74

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT ++ AA EM  RV  I+   +  +  +  A +                        
Sbjct: 75  LLLTFSRRAADEMGRRVQRILAQVAVDTPWLAQATLQWS--------------------- 113

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                    T H     +++++     +   F I D E S  L+  A+  
Sbjct: 114 --------GTFHGIGARLLREYAGRIGLDPAFTIHDREDSADLMNLARHE 155


>gi|320581966|gb|EFW96185.1| DNA helicase and DNA-dependent ATPase [Pichia angusta DL-1]
          Length = 775

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 37/167 (22%)

Query: 16  LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
            +      Q  A  + P     V A  G+GKT ++  RV  LLL +   P  ++  T TK
Sbjct: 4   FVDDLNEHQRAAVTASPNGVVLVLAGPGTGKTKVITARVAYLLLHHKLPPQDVVVATFTK 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  ++  +  +                        A+ LL           
Sbjct: 64  KAANEMVERLAVLLQPYPEID-----------------------AKKLL----------- 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           + T H+ C  I++++     + + F IADE  +K+LI++  ++   S
Sbjct: 90  IGTFHSICVRILRKYGGLVGLNTGFKIADETDAKQLIKKVLRAMAES 136


>gi|171779530|ref|ZP_02920494.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282147|gb|EDT47578.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 783

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 50/206 (24%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           F   +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +
Sbjct: 11  FYTMNPLLNGMNDKQAEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNI 68

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  R                           P  +D            
Sbjct: 69  LAITFTNKAAREMRER----------------------AMALNPATADTL---------- 96

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                  + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  
Sbjct: 97  -------IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPK 145

Query: 186 EELKKAFYEILEISNDEDIETLISDI 211
           +  ++A    +  + ++    L+ +I
Sbjct: 146 KWNERAILGTISNAKND----LLDEI 167


>gi|118595284|ref|ZP_01552631.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
 gi|118441062|gb|EAV47689.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
          Length = 725

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 47/202 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            +Q   +   +SA + A AGSGKT +L  R   L+    A P  +L +T T  AA EM  
Sbjct: 19  KQQEAVTLSDQSALILAGAGSGKTKVLTSRFAWLIQNQIASPGGILAVTFTNKAAKEMLV 78

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+   +                                         P G+ V T H  C
Sbjct: 79  RISAQLPI--------------------------------------NPRGMWVGTFHGLC 100

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
              +++   +A++   F I D    K     A K  +  + +D +    K     +  + 
Sbjct: 101 NRFLKKHYQDASLPQIFQILDSADQKS----AIKRVMKKMNIDEDFLPSKEVLYFINGNK 156

Query: 201 DEDIE----TLISDIISNRTAL 218
           +E +         DI   + A+
Sbjct: 157 EEGVRSNAYKAFDDISEKKNAI 178


>gi|325475282|gb|EGC78467.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola
           F0402]
          Length = 1128

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 40/225 (17%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           +++      Q  A    +++ ++A AGSGKT +L  R +  ++        ++ LT T+ 
Sbjct: 7   NIMDSLNENQKNAVSVEKNSVIAAGAGSGKTKVLAARYVYFVVEKGVSVEKIIALTFTEK 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+   +    H +                               +E     K+
Sbjct: 67  AAAEMHKRIYNELKKIDHPNA---------------------------RNAIEKFHLAKI 99

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +FC  I +       I+  F I D  +S+KL           +  D   +      
Sbjct: 100 STIDSFCNRIARDACKSFGISPDF-IIDNAESEKLAYRIGLDFFLKMRSDKTMQF----- 153

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                  D  I+  +S +      L         +  +K +E  +
Sbjct: 154 ----FLGDNGIDDFVSGLFVK--LLSNYVLISRPIDFKKSLEAQI 192


>gi|254526415|ref|ZP_05138467.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221537839|gb|EEE40292.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 802

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 18/166 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S    +    +       V A AGSGKT  L  R+  L+  N   P  +L +T T  AA 
Sbjct: 11  SLNNQQLQAVTHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAK 70

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+  ++      +         K   +   ++++ + R            L + T 
Sbjct: 71  EMKARLEVLLAQELAFNQFGQPWTTLKEIDQNQLRANVHQER---------LQNLWIGTF 121

Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175
           H+    +++ + +E             F+I DE  S+ L++E    
Sbjct: 122 HSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166


>gi|307708679|ref|ZP_07645142.1| recombination helicase AddA [Streptococcus mitis NCTC 12261]
 gi|307615253|gb|EFN94463.1| recombination helicase AddA [Streptococcus mitis NCTC 12261]
          Length = 1216

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 29/222 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGIEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+                 Q ++ +  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISQ----------------QIQETHNVDLK--QHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197
            +  + +     +I  +F I   +  + L++         +   + + + K+ F  +L  
Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQGKQKETFSHLLKN 186

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239
            +     E  +          K+  F  S    +K + +S  
Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223


>gi|289523886|ref|ZP_06440740.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502542|gb|EFD23706.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 1191

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 12/169 (7%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E    I L + T +++           VSA AGSGKT  L  R   L+    A    +L 
Sbjct: 6   EAMAEIFLATATPNQREAVLAEDDLVVVSAGAGSGKTRTLSWRFAWLVATGRARHDEILT 65

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T+ AA EM  ++L  +  W           +  ++    ++         L      
Sbjct: 66  ITFTEKAAQEMEDKILSTLGDW-----------LNAVRSSNLSRQKREDTEKRLELACSR 114

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               ++ TIH+F   +++ +     I+  F I   +Q     + A  + 
Sbjct: 115 FDEAQISTIHSFAMNLLKSYSQFLEISPAFNIVTPQQEDLFYQSALSAL 163


>gi|222637066|gb|EEE67198.1| hypothetical protein OsJ_24304 [Oryza sativa Japonica Group]
          Length = 1186

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 45/194 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +++ E +  ++  + E    SD T    + A  GSGKT  +V RVL LL     PS +L 
Sbjct: 278 KKYYEYLQSLNDRQREA-ACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNILA 336

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T AAA+EM  R+  ++                                         
Sbjct: 337 MTFTTAAASEMRDRIGTVVGKAVAKE---------------------------------- 362

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE-------QSKKLIEEAKKSTLASI 180
              + + T H+FC  + +    +   TS F I           ++++L+E  K + L   
Sbjct: 363 ---IVISTFHSFCLQLCRTHAEKLGRTSEFIIYGNGQQRRAVIEAERLLESDKNNGLGDA 419

Query: 181 MLDNNEELKKAFYE 194
             + + ++K +F +
Sbjct: 420 NKNCDGDIKNSFKD 433


>gi|159045024|ref|YP_001533818.1| DNA helicase II [Dinoroseobacter shibae DFL 12]
 gi|157912784|gb|ABV94217.1| DNA helicase II [Dinoroseobacter shibae DFL 12]
          Length = 807

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 44/193 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + + + + D      + A AG+GKT  L  R+  LLL   A P+ +L +T T
Sbjct: 38  YLDTLNPAQRQAVESLD--GPVLMLAGAGTGKTKALTCRIAHLLLTGTARPNEILAVTFT 95

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                          G  
Sbjct: 96  NKAAREMKERVATLMNQPVE-------------------------------------GMP 118

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA    ++++      + S+F I D +   +L+++     + +  +D      + 
Sbjct: 119 WLGTFHAIGVKLLRRHAELVGLKSNFTILDTDDQVRLLKQ----IIVAENIDEKRWPARQ 174

Query: 192 FYEILEISNDEDI 204
              I++   +   
Sbjct: 175 LAHIIDGWKNRAW 187


>gi|301310959|ref|ZP_07216888.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3]
 gi|300831022|gb|EFK61663.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3]
          Length = 1055

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AG+GKTH L    L LL +       +L +T T  A  EM  R+++ +   +      
Sbjct: 7   ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              ++         +    +AR +L+ IL       + TI  F +  M+ F  E  +   
Sbjct: 67  Y-IQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214
           + I  E   + ++ EA  + LA +    +++L        E    D    +L  DI+S +
Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAEDKIEDGGGWSLRKDIMSLS 183

Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240
           R   K  +  FS    + I +K    
Sbjct: 184 REVFKESYKAFSEEVGKDIADKQALD 209


>gi|256844677|ref|ZP_05550162.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN]
 gi|256613218|gb|EEU18422.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN]
          Length = 748

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 7   LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R  +++   +                                        + + 
Sbjct: 67  ASEMREREQKLLGPAA--------------------------------------NDIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +     +F+IAD  +   L++  +K  
Sbjct: 89  TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL 130


>gi|256850561|ref|ZP_05555987.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US]
 gi|256712584|gb|EEU27579.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US]
          Length = 748

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 7   LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R  +++   +                                        + + 
Sbjct: 67  ASEMREREQKLLGPAA--------------------------------------NDIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +     +F+IAD  +   L++  +K  
Sbjct: 89  TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL 130


>gi|313891747|ref|ZP_07825352.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus
           UPII 345-E]
 gi|313119741|gb|EFR42928.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus
           UPII 345-E]
          Length = 735

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 40/163 (24%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            ++    +Q  A +       + A AGSGKT  L  R+  +L     P  +L +T T  A
Sbjct: 4   YLNSLNEQQRKAVEHLYGPVLIMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 64  AQEMKERVQNLVGVIA--------------------------------------NKIWMY 85

Query: 135 TIHAFCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKST 176
           T H+F    +++      I TS F I D + SK+L++   K  
Sbjct: 86  TFHSFGVRFLRREIENGGIYTSKFTIYDSDDSKQLLKNILKEL 128


>gi|296876758|ref|ZP_06900806.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
           15912]
 gi|296432260|gb|EFH18059.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
           15912]
          Length = 767

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 46/203 (22%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           N   E +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P 
Sbjct: 2   NGENEMNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPW 59

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  R  ++  A                                   
Sbjct: 60  NILAITFTNKAAREMKERAYQLNPATQDCL------------------------------ 89

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                    + T H+ C  I+++         +F I D  + + L+    K  L S+ LD
Sbjct: 90  ---------IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKSLNLD 136

Query: 184 NNEELKKAFYEILEISNDEDIET 206
             +  ++     +  + ++ I+ 
Sbjct: 137 PKKWNERTILGTISNAKNDLIDE 159


>gi|299131903|ref|ZP_07025098.1| UvrD/REP helicase [Afipia sp. 1NLS2]
 gi|298592040|gb|EFI52240.1| UvrD/REP helicase [Afipia sp. 1NLS2]
          Length = 830

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L    A P  +L +T T  
Sbjct: 34  YLSALNPEQREAVETLDGPVLVLAGAGTGKTRVLTSRIAHILSQGRARPFEILSVTFTNK 93

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM HR+ E++                                          G   +
Sbjct: 94  AAREMKHRLGEMLGQTVE-------------------------------------GMPWL 116

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T HA    I++     A + S+F + D +   +L+++     L +  +D+     +   
Sbjct: 117 GTFHAIAGRILRVHAELAQLKSNFTVLDVDDQIRLLKQ----LLQAEGIDDKRWPARMLA 172

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 173 GLIDGWKNRGL 183


>gi|183221122|ref|YP_001839118.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911213|ref|YP_001962768.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775889|gb|ABZ94190.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779544|gb|ABZ97842.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 664

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 41/182 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            ++++ +   P     V A AG+GKT  LV R+  L+    +P ++L LT T+ AA EM 
Sbjct: 6   NEAQKQVVLAPKGPILVVAGAGTGKTKTLVHRLAHLVKNGTNPESILLLTFTRRAAKEML 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R  +I+                                            ++  T H+F
Sbjct: 66  GRASQILD--------------------------------------HRMMSVRGGTFHSF 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL---ASIMLDNNEELKKAFYEIL 196
           C   ++++    ++ SHF I DEE +   +  A+   +     +     E L + F    
Sbjct: 88  CHLFLRKYANALSLDSHFTILDEEDTIGFVGMARDQVVTTGTKVRFPKKETLAEIFSSCF 147

Query: 197 EI 198
            +
Sbjct: 148 NL 149


>gi|283780044|ref|YP_003370799.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283438497|gb|ADB16939.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 1049

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 13/200 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AG+GKT+ L    L+LL+    P  +L  T T+ AA E+  R+L  +   +   
Sbjct: 15  VVIRASAGTGKTYRLTGHYLQLLVDGVPPRNILATTFTRKAAGEIFDRILLRLAQAALTD 74

Query: 94  D--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           +  + L+A I + Q        ++K + LL +IL     L+V T+ +F   I     LE 
Sbjct: 75  EACQQLAAAIARPQ------LTVTKCQELLTSILSQLDALQVGTLDSFFARIATSLALEL 128

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++   ++I + E+  ++  +A ++ L     +   +L      + +      +  L+ D 
Sbjct: 129 SLPLGWSICEYEEDLRMRRDAIEAVLD---TEKTSDLLTLVNLLFKGEARRGVSDLVLDT 185

Query: 212 ISNRTALKLIFFFFSYLWRR 231
           ++  +   L        W++
Sbjct: 186 VN--SLYSLYRETSRDAWQK 203


>gi|262384055|ref|ZP_06077191.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B]
 gi|262294953|gb|EEY82885.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B]
          Length = 1055

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AG+GKTH L    L LL +       +L +T T  A  EM  R+++ +   +      
Sbjct: 7   ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLAS-GRAS 65

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              ++         +    +AR +L+ IL       + TI  F +  M+ F  E  +   
Sbjct: 66  DYIQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214
           + I  E   + ++ EA  + LA +    +++L        E    D    +L  DI+S +
Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAEDKIEDGGGWSLRKDIMSLS 183

Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240
           R   K  +  FS    + I +K    
Sbjct: 184 REVFKESYKAFSEEVGKDIADKQALD 209


>gi|309800338|ref|ZP_07694507.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302]
 gi|308116035|gb|EFO53542.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302]
          Length = 149

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 46/187 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +E +  ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNELLKGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD    +
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKNGM 135

Query: 189 KKAFYEI 195
              F+E+
Sbjct: 136 NGLFWEL 142


>gi|309389840|gb|ADO77720.1| ATP-dependent DNA helicase PcrA [Halanaerobium praevalens DSM 2228]
          Length = 715

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 41/168 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           E S+ +  ++   ++            V A AGSGKT +L +R+  L+         +L 
Sbjct: 2   EDSQILKDLN--PAQAKAVKHHQGPELVLAGAGSGKTRVLTRRIGYLINHYQVSAYNILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV  II                                        T
Sbjct: 60  VTFTNKAANEMKERVKNIIGV--------------------------------------T 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              L V T H+FC  I+++   +     +F I D    +KL++E  KS
Sbjct: 82  NTNLWVSTFHSFCVRILRREAEKLGYNKNFVIFDSLDQRKLVKEILKS 129


>gi|121634106|ref|YP_974351.1| DNA helicase II [Neisseria meningitidis FAM18]
 gi|120865812|emb|CAM09544.1| DNA helicase II [Neisseria meningitidis FAM18]
 gi|325131618|gb|EGC54325.1| DNA helicase II [Neisseria meningitidis M6190]
 gi|325139127|gb|EGC61673.1| DNA helicase II [Neisseria meningitidis ES14902]
          Length = 735

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T T 
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPVDVR--------------------------------------AMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134


>gi|329121051|ref|ZP_08249682.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM
           19965]
 gi|327471213|gb|EGF16667.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM
           19965]
          Length = 735

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 40/163 (24%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            ++    +Q  A +       + A AGSGKT  L  R+  +L     P  +L +T T  A
Sbjct: 4   YLNSLNEQQRKAVEHLYGPVLIMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                        + + 
Sbjct: 64  AQEMKERVQNLVGVIA--------------------------------------NKIWMY 85

Query: 135 TIHAFCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKST 176
           T H+F    +++      I TS F I D + SK+L++   K  
Sbjct: 86  TFHSFGVRFLRREIENGGIYTSKFTIYDSDDSKQLLKNILKEL 128


>gi|260881142|ref|ZP_05893318.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544]
 gi|260849631|gb|EEX69638.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544]
          Length = 773

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 40/167 (23%)

Query: 12  ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           + +D+ S     Q  A +       + A AGSGKT +L  R+  LL     P ++L +T 
Sbjct: 3   DILDIFSGLNPAQKKAVAHTEGPLLIMAGAGSGKTKVLTCRIANLLAQGVAPYSILAITF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  +I   +                                        
Sbjct: 63  TNKAATEMRERVDRMIGDAAK--------------------------------------D 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKST 176
           + + T H+FC   +++      I   +F I D   S+ +I+E  K  
Sbjct: 85  VWLSTFHSFCARFLRREIEATGIYKRNFVIYDASDSQTVIKECLKEM 131


>gi|320531567|ref|ZP_08032515.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136218|gb|EFW28218.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 692

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 39/147 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                + A AGSGKT +L  R+ RL+    A P  +L +T T  AAAEM  RV  ++   
Sbjct: 1   GAPLLIIAGAGSGKTRVLTHRIARLIATGRARPGEILAITFTNKAAAEMRERVTALVGPA 60

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                                    + V T H+ C  I+++   
Sbjct: 61  GE--------------------------------------RMWVSTFHSACVRILRREHE 82

Query: 150 EANITSHFAIADEEQSKKLIEEAKKST 176
            A + S F+I D   S +LI    +  
Sbjct: 83  AAGLRSTFSIYDAADSTRLITLIVREL 109


>gi|325687804|gb|EGD29824.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK72]
          Length = 762

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 45/205 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     E     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQECL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  ++++         +F I    + + L++    +   ++  D  +  ++A
Sbjct: 84  -ITTFHSLCIRVLRREADHIGYNRNFTIVGPSEQRTLMKRILNNI--NLNSDEEKWNERA 140

Query: 192 FY-EILEISNDEDIETLISDIISNR 215
               I    ND   E   +++  ++
Sbjct: 141 ILGTISNAKNDLIDEEAYANLAGDK 165


>gi|300694290|ref|YP_003750263.1| ATP-dependent DNA helicase ii protein (uvrd) [Ralstonia
           solanacearum PSI07]
 gi|299076327|emb|CBJ35640.2| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum PSI07]
          Length = 710

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 62/171 (36%), Gaps = 31/171 (18%)

Query: 15  DLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D ++Q   +Q  A +          T    V A AGSGKTH L  RV  L+   A P  +
Sbjct: 15  DYLAQLNDQQRQAVEFGISGADAAETGPLLVLAGAGSGKTHTLGWRVAHLVANGADPQRI 74

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT ++ AA+E+S R   ++    H S    SA  T  Q   P                
Sbjct: 75  LLLTFSRRAASELSSRAGHLLARAMHGSTGARSAAGTTYQTALP---------------- 118

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    T H     +++++     +   F I D   S  L+   +   
Sbjct: 119 ------WAGTFHGIGARLLREYAQRIGLAPDFTIHDRSDSADLLNVVRHEL 163


>gi|295692389|ref|YP_003600999.1| ATP-dependent DNA helicase pcra [Lactobacillus crispatus ST1]
 gi|295030495|emb|CBL49974.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus ST1]
          Length = 748

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 7   LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R  +++   +                                        + + 
Sbjct: 67  ASEMREREQKLLGPAA--------------------------------------NDIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +     +F+IAD  +   L++  +K  
Sbjct: 89  TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL 130


>gi|15806776|ref|NP_295498.1| DNA helicase II [Deinococcus radiodurans R1]
 gi|6459549|gb|AAF11329.1|AE002019_2 DNA helicase II [Deinococcus radiodurans R1]
          Length = 745

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 42/164 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            + +  ++ T+++   A   T  A V A AGSGKT  L+ R+  L+     HP  +L +T
Sbjct: 7   PDLLQALNPTQAQ--AADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVT 64

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  R   ++                                          G
Sbjct: 65  FTNKAAAEMRERAGHLVPGA---------------------------------------G 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            L + T H+    I++ +     +   F I D++    +I+E  
Sbjct: 86  DLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVM 129


>gi|228990221|ref|ZP_04150190.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM
           12442]
 gi|228769504|gb|EEM18098.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM
           12442]
          Length = 1182

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 32/175 (18%)

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             LL +T T AAA EM +R+ E +                K+   +P    + K   LL 
Sbjct: 2   DRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSGHVRKQLSLL- 45

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                     + TIH+FC  +++ +    ++   F IA++ +++ L EE     L     
Sbjct: 46  ------NKASISTIHSFCLQVIRTYYYMLDVDPRFRIANQTENELLKEEVLDDILEE--- 96

Query: 183 DNNEELKKAFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           +   E    F+E+++  ++D   + L       R  L L     ++    K ++K
Sbjct: 97  EYGIEGNDIFFELVDRYTSDRSDDDL------QRMILALHTESRAHPDPEKWLDK 145


>gi|310657865|ref|YP_003935586.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519]
 gi|308824643|emb|CBH20681.1| ATP-dependent DNA helicase [Clostridium sticklandii]
          Length = 720

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 39/163 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +DL    K +    +       + A AGSGKT ++  R+  ++      P ++L +T T 
Sbjct: 1   MDLTGLNKDQLSAVTRVEGPLLILAGAGSGKTRVITYRIAHMIEDLKISPYSILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +I   +                                        + 
Sbjct: 61  KAAKEMKERVSALIGDRAK--------------------------------------DMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T H+ C  I+++          F I D +    LI+E  K 
Sbjct: 83  ISTFHSLCVRILRRDIERIGYNRSFVIYDTQDQLSLIKECIKE 125


>gi|294625145|ref|ZP_06703789.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600564|gb|EFF44657.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 728

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  
Sbjct: 2   DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR    +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H     +++    +A +   F + D +   +L++   ++ 
Sbjct: 84  --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 130


>gi|188579188|ref|YP_001916117.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523640|gb|ACD61585.1| DNA helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 728

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  
Sbjct: 2   DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR    +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H     +++    +A +   F + D +   +L++   ++ 
Sbjct: 84  --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 130


>gi|329960510|ref|ZP_08298898.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
 gi|328532740|gb|EGF59527.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
          Length = 1156

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 15/213 (7%)

Query: 34  AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L V+ +  L+L       +L +T T  A AEM  R+L+ +      
Sbjct: 78  LVYKASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIWKS 137

Query: 93  SDEI------LSAEITKIQGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                     +  E+ +I G   + +++  +A   L  +L      +V+TI +F +++M+
Sbjct: 138 DPASEAYLSRIQEELKRIDGGTLDTAEIRQRAGMALQYMLHDYSRFRVETIDSFFQSVMR 197

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E  ++ +  I  E  + +++ +A  S +  +              +L+  N+   +
Sbjct: 198 NLARELELSPNLNI--ELNNTEVLSDAVDSLIEKLTS-----TSPVLAWLLDYINERIAD 250

Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
               ++ +         F  SY+ R + + + L
Sbjct: 251 DKRWNVSNEVKNFGRNIFDESYIERGEGLRQCL 283


>gi|253698974|ref|YP_003020163.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M21]
 gi|251773824|gb|ACT16405.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M21]
          Length = 1129

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +    LRL+L      S +L +T T+AA  E+  R+   +   +   
Sbjct: 16  LIEASAGTGKTFTIAGVYLRLVLEEKFDVSRILVVTFTEAATKELKERIRNKLKE-AENG 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
               +AE   I G   +  D S+AR LL + + +     + TIH FC+ ++Q  P E+  
Sbjct: 75  FLTGAAEDFLIDGLLKSTPDHSEARRLLGSAVRSFDEAAIFTIHGFCQRMLQDNPFESG- 133

Query: 154 TSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEELKKA 191
               ++ D E      K++ E  +           E+   A
Sbjct: 134 ----SLCDTELVTDQGKILMEIAQDYWRINCYGQPEDRIAA 170


>gi|330836710|ref|YP_004411351.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329748613|gb|AEC01969.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 668

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 46/190 (24%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           + DL  +   EQ L AS       + A AGSGKT +L  RV  +L     P ++L LT T
Sbjct: 2   SFDLRRELNPEQYLAASTIDGPLLIIAGAGSGKTRMLTFRVAHMLENGISPHSILALTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM+ R+ ++                                             L
Sbjct: 62  NKAAAEMAERIHDLTGVSRK--------------------------------------EL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              T HAF   +++++        +F I D    + L+ +   +          EE    
Sbjct: 84  MATTFHAFGMKLLKKYIHLLGYKDNFTIFDASDVQTLLSDVIHNL-------GYEEADYN 136

Query: 192 FYEILEISND 201
           F+E+  + +D
Sbjct: 137 FFELASLFSD 146


>gi|158319600|ref|YP_001512107.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs]
 gi|158139799|gb|ABW18111.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs]
          Length = 739

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
             +    ++           V A AGSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 19  YHTLNPMQKNAVLTTEGPVLVLAGAGSGKTRVLTHRIAYLVEEKGVSPYHILAITFTNKA 78

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++  +                                         L V 
Sbjct: 79  AKEMKERVEALLGDYHR--------------------------------------DLWVS 100

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C  I++    +     +F I D    + L+++  K  
Sbjct: 101 TFHSSCVRILRMEIDKLGYEKNFVIYDTTDQQVLMKDCLKKF 142


>gi|166710261|ref|ZP_02241468.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 728

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  
Sbjct: 2   DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR    +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H     +++    +A +   F + D +   +L++   ++ 
Sbjct: 84  --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAM 130


>gi|33860862|ref|NP_892423.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33633804|emb|CAE18763.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 802

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 28/216 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S   ++            V A AGSGKT  L  R+  L+  N   P  +L +T T  AA 
Sbjct: 11  SLNNAQLNAVKHINGPLLVVAGAGSGKTKALTHRIANLIENNSVDPHNILAVTFTNKAAK 70

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+  ++     L+         K   +   ++++ + R            L + T 
Sbjct: 71  EMKARLQVLLAQEIALNQFGQPWSTLKEFDQNQLRTNIDQER---------LRDLWIGTF 121

Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKSTLA-SIMLDNNEEL 188
           HA    +++ + +E             F+I DE  S+ L++E     ++      + +++
Sbjct: 122 HALFSRLLR-YDIEKYQDPEGLTWTRQFSIYDETDSQTLVKEIVGQDMSLDPKRFDPKKI 180

Query: 189 KKAFYEI---------LEISNDEDIETLISDIISNR 215
           K+A             LE   D   + +I+D     
Sbjct: 181 KRAISNAKNQCFTANDLEEKADNHFDKVIADAYRRY 216


>gi|319405990|emb|CBI79622.1| DNA helicase II [Bartonella sp. AR 15-3]
          Length = 781

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 68/186 (36%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++    +      V A AG+GKT +L  R+  +L    AHP  +L +T T  AA EM
Sbjct: 13  NPEQKQAVINTEGPILVLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ E++    +                                         + T H+
Sbjct: 73  KIRIGELVGKTVNDMP-------------------------------------WLGTFHS 95

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++     ++ S+F I D +   +L+++     + +  LD+     +    +++ 
Sbjct: 96  TGAKILRRHAELVDLKSNFTILDRDDVTRLLKQ----LIQAEGLDDKRWPARNLAAMIDS 151

Query: 199 SNDEDI 204
             ++ +
Sbjct: 152 WKNQGL 157


>gi|303237262|ref|ZP_07323832.1| putative ATP-dependent helicase PcrA [Prevotella disiens
           FB035-09AN]
 gi|302482649|gb|EFL45674.1| putative ATP-dependent helicase PcrA [Prevotella disiens
           FB035-09AN]
          Length = 841

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 39/175 (22%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +  N+ ++  E +  +++ +   +       ++ V A AGSGKT +L  ++  L++    
Sbjct: 1   MQDNTEEKIKELLSGLNENQRAAVEYC--QGASLVVAGAGSGKTRVLTYKIAYLMMCGVL 58

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P  +L LT T  AA EM  R+ ++++                             A+ L 
Sbjct: 59  PYRILALTFTNKAAKEMQSRIGQLVSH--------------------------DDAKQLY 92

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           +            T H+    I++    +     +F I DE  S+ LI+   KS 
Sbjct: 93  M-----------GTFHSVFSRILRAEADKLGYERNFTIYDESDSRSLIKTIVKSL 136


>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 876

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++      PS +LC+T T  A
Sbjct: 7   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 67  CKEMSDRVMKIVGGEAK--------------------------------------EITIR 88

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  K++I +       S ++  N +++K   
Sbjct: 89  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCKEVINKLSYYYATSNLMATNMQIQKVID 148

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216
                 A  E LE    ++ +T+I +I   R 
Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 180


>gi|51598860|ref|YP_073048.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           garinii PBi]
 gi|51573431|gb|AAU07456.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           garinii PBi]
          Length = 658

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 65/232 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 9   SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+                                            L + T H
Sbjct: 69  MKDRIKKILK--------------------------------------NPLSNLMISTFH 90

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST--------LASI--------- 180
           AF    +++         +F+I D+     L++E             L+S+         
Sbjct: 91  AFGLFFLKENYKLLGYKKNFSIYDDNDRISLLKEILLDEGLFNKKVSLSSLSNAISLLKN 150

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIF 222
                  + + +  + + + + L + N  D + LI    +++SN + ++  +
Sbjct: 151 GILTFDDLKEEDIHIFRLYEDRLRLYNSFDFDDLILKPKELLSNNSDIRSKY 202


>gi|218528416|ref|YP_002419232.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
 gi|218520719|gb|ACK81304.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
          Length = 795

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 11  SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            E    +S    EQ  A +       V A AG+GKT +L  R+  L+    A P  +L +
Sbjct: 38  PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM HR+  +I                                          
Sbjct: 98  TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G   + T HA    I+++      + S F I   +   +L+++     ++   +D     
Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLRSDFTILGTDDQLRLMKQ----VISDQNIDEKRWP 176

Query: 189 KKAFYEILEISNDEDI 204
            ++    ++   +  +
Sbjct: 177 ARSLAHTIDGWKNRGL 192


>gi|116617682|ref|YP_818053.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096529|gb|ABJ61680.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 766

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 45/191 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            I  ++  +SE +  ++      + A AGSGKT +L  R+  L+   N +P  +L +T T
Sbjct: 23  LIQGMNDKQSEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAHLVQDKNVYPWRILAITFT 80

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                          D   AR            +
Sbjct: 81  NKAAREMRERIAQLV--------------------------DPEIARE-----------I 103

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKK 190
            V T HA    I+++      +  +F I D    + L+    K  +  + LD N+ + + 
Sbjct: 104 WVSTFHAMAVRILRRDGERIGLARNFTIIDTSAQRTLM----KRVINDLNLDTNQYDPRT 159

Query: 191 AFYEILEISND 201
               +    ND
Sbjct: 160 ILGTVSNAKND 170


>gi|123967864|ref|YP_001008722.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601]
 gi|123197974|gb|ABM69615.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601]
          Length = 802

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 18/166 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S    +            V A AGSGKT  L  R+  L+  N   P  +L +T T  AA 
Sbjct: 11  SLNNQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAK 70

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+  ++      +         K   +   ++++ K R            L + T 
Sbjct: 71  EMKARLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHKDR---------LQNLWIGTF 121

Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175
           H+    +++ + +E             F+I DE  S+ L++E    
Sbjct: 122 HSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166


>gi|217976782|ref|YP_002360929.1| UvrD/REP helicase [Methylocella silvestris BL2]
 gi|217502158|gb|ACK49567.1| UvrD/REP helicase [Methylocella silvestris BL2]
          Length = 790

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  +   + A D      V A AG+GKT +L  R+  +L    A    +L +T T
Sbjct: 33  YLDGLNPEQRAAVEAID--GPVLVLAGAGTGKTRVLTTRIAHILAEGRARAHEILAVTFT 90

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  +                                           G  
Sbjct: 91  NKAAREMRDRVALLAGPVGE-------------------------------------GMP 113

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA    I+++      + S F I D +   +L+++     L +  +D+     ++
Sbjct: 114 WLGTFHAISTKILRRHAELVGLKSSFTILDTDDQIRLLKQ----VLKAEDIDDKRWPARS 169

Query: 192 FYEILEISNDEDIE 205
               ++   +  ++
Sbjct: 170 LAYQIDAWKNRGLD 183


>gi|90021650|ref|YP_527477.1| DNA helicase/exodeoxyribonuclease V subunit A [Saccharophagus
           degradans 2-40]
 gi|89951250|gb|ABD81265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Saccharophagus
           degradans 2-40]
          Length = 1155

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 13/212 (6%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            +S +  A D ++S  V+A AGSGKT +L  RVL+LL     P  +L +T T+ AAAEM 
Sbjct: 5   DQSARDSALDISQSWVVTAPAGSGKTGLLTLRVLKLLAVVESPEEILAITFTRKAAAEML 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNK----------SDMSKARHLLITILETPG 129
            R++  +     L+     A+  +   +  ++          + +++ +     +L+   
Sbjct: 65  ERIVGALIEADELTRNCSPAQALEKINQIDDEHTLRFMQSAYAALARDKTQGWNLLQNTH 124

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            LK+ TI  FC  +  Q P+ +    +  I DE   + L E+A  + + S      E+  
Sbjct: 125 RLKITTIDGFCRELSNQLPMLSGAGVNPQICDEP--RLLYEQAVMNLIESYKTGACEQAI 182

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLI 221
                 L+   D  ++ L+ D++ +R     +
Sbjct: 183 NQVLTHLDNDLDR-VKRLLVDLLGSREQWLPL 213


>gi|306833580|ref|ZP_07466707.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
 gi|304424350|gb|EFM27489.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
          Length = 771

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  +D      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDKQAEAVKTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P  +D               
Sbjct: 59  TFTNKAAREMRER----------------------AMALNPATADTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ ++ 
Sbjct: 136 ERAILGTISNAKNDLLDE 153


>gi|257468110|ref|ZP_05632206.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185]
 gi|317062395|ref|ZP_07926880.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185]
 gi|313688071|gb|EFS24906.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185]
          Length = 725

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      ++  A     +  + A AGSGKT  +  R+  ++      P  +L +T T  A
Sbjct: 4   LEKLNDRQRKAAEKIEGALLILAGAGSGKTRTITYRIAHMIQELGISPYKILAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV ++I                                       E      V 
Sbjct: 64  AKEMKERVEDLIG--------------------------------------EDGKRTMVS 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+F   +++ +       ++F I D +  K++++   K  
Sbjct: 86  TFHSFGVRLLRTYGDRLGYGANFTIYDADDQKRVVKGIMKEL 127


>gi|163849774|ref|YP_001637817.1| UvrD/REP helicase [Methylobacterium extorquens PA1]
 gi|163661379|gb|ABY28746.1| UvrD/REP helicase [Methylobacterium extorquens PA1]
          Length = 795

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 11  SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            E    +S    EQ  A +       V A AG+GKT +L  R+  L+    A P  +L +
Sbjct: 38  PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM HR+  +I                                          
Sbjct: 98  TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G   + T HA    I+++      + S F I   +   +L+++     ++   +D     
Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VISDQNIDEKRWP 176

Query: 189 KKAFYEILEISNDEDI 204
            ++    ++   +  +
Sbjct: 177 ARSLAHTIDGWKNRGL 192


>gi|328948419|ref|YP_004365756.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328448743|gb|AEB14459.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 675

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 58/163 (35%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL  +   EQ  A         + A AGSGKT ++  R+  +L      S +L LT T  
Sbjct: 6   DLKDKLNPEQYKAVSTIEGPILIIAGAGSGKTRVITYRIANMLEKGIPQSQILALTFTNK 65

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ E+                                             L V
Sbjct: 66  AAKEMEERIKELTGK--------------------------------------KLNNLTV 87

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HAF   I++Q   +     +F+I DE   K LI+E+ +  
Sbjct: 88  STFHAFGVRILRQEITKLGYRENFSIYDETDKKALIKESGREL 130


>gi|289450713|ref|YP_003474825.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185260|gb|ADC91685.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 849

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           DL++     Q  A         + A AGSGKT ++  R+  L+   N   S++L +T T 
Sbjct: 39  DLLAGLNEPQKKAVLHKDGPLLILAGAGSGKTKVITHRIAYLVEHENVPASSILAITFTN 98

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R++++I                                           G+ 
Sbjct: 99  KAAQEMRQRIIKLIGNRVQ--------------------------------------GMW 120

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T HA    I++        T  F +AD +   K+I+      
Sbjct: 121 VGTFHAMFLRILRNHAELLGFTKRFTVADTDDQLKMIKACLDEL 164


>gi|254558836|ref|YP_003065931.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           DM4]
 gi|254266114|emb|CAX21866.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           DM4]
          Length = 795

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 11  SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            E    +S    EQ  A +       V A AG+GKT +L  R+  L+    A P  +L +
Sbjct: 38  PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM HR+  +I                                          
Sbjct: 98  TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G   + T HA    I+++      + S F I   +   +L+++     ++   +D     
Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VISDQNIDEKRWP 176

Query: 189 KKAFYEILEISNDEDI 204
            ++    ++   +  +
Sbjct: 177 ARSLAHTIDGWKNRGL 192


>gi|240136984|ref|YP_002961453.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           AM1]
 gi|240006950|gb|ACS38176.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           AM1]
          Length = 795

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 11  SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            E    +S    EQ  A +       V A AG+GKT +L  R+  L+    A P  +L +
Sbjct: 38  PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM HR+  +I                                          
Sbjct: 98  TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G   + T HA    I+++      + S F I   +   +L+++     ++   +D     
Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VISDQNIDEKRWP 176

Query: 189 KKAFYEILEISNDEDI 204
            ++    ++   +  +
Sbjct: 177 ARSLAHTIDGWKNRGL 192


>gi|149177760|ref|ZP_01856360.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148843410|gb|EDL57773.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 755

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +    S       V A  GSGKT ++  R+  L+ A+     +L +T T  AA EM 
Sbjct: 8   TPPQFAAVSHHQGPLLVLAGPGSGKTRVITHRIASLIHAHVPAHQILGITFTNKAADEMG 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV ++I                                            +++ T H F
Sbjct: 68  ERVRQLIPD----------------------------------------SRVEISTFHKF 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           C  I++++     + S+F+I D    ++LI       
Sbjct: 88  CVKILRRYGRGVGLDSNFSIFDTTDQQQLIRFVLNEL 124


>gi|148257387|ref|YP_001241972.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1]
 gi|146409560|gb|ABQ38066.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1]
          Length = 855

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            ++    EQ  A +       V A AG+GKT +L  R+  +L    A P  +L +T T  
Sbjct: 36  YLAGLNPEQRDAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPGEILSVTFTNK 95

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ E++                                          G   +
Sbjct: 96  AAREMKTRLAEMLGQAVE-------------------------------------GMPWL 118

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       + S+F + D +   +L+++     L +  +D+     +   
Sbjct: 119 GTFHSIAGRILRSHAELVQLKSNFTVLDVDDQIRLLKQ----LLQAENIDDKRWPARMLA 174

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 175 GLIDGWKNRGL 185


>gi|325956252|ref|YP_004286862.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC]
 gi|325332817|gb|ADZ06725.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC]
 gi|327183068|gb|AEA31515.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1118]
          Length = 748

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 7   LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R  +++   +                                        + + 
Sbjct: 67  ATEMREREQKLLGPAAE--------------------------------------NIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +   + +F+IAD  +   L++  +K  
Sbjct: 89  TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130


>gi|256841725|ref|ZP_05547231.1| ATP-dependent helicase [Parabacteroides sp. D13]
 gi|256736619|gb|EEU49947.1| ATP-dependent helicase [Parabacteroides sp. D13]
          Length = 1055

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AG+GKTH L    L LL +       +L +T T  A  EM  R+++ +   +      
Sbjct: 7   ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLAS-GRAS 65

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              ++         +    +AR +L+ IL       + TI  F +  M+ F  E  +   
Sbjct: 66  DYIQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214
           + I  E   + ++ EA  + LA +    +++L        E    D    +L  DI+S +
Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAEDKIEDGGGWSLRKDIMSLS 183

Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240
           R   K  +  FS    + I +K    
Sbjct: 184 REVFKESYKAFSEEVGKDISDKQALD 209


>gi|313890094|ref|ZP_07823729.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121455|gb|EFR44559.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 759

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +D ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLDGMNDKQTEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKCINPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAHEMRER----------------------ALALNPATQDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L S+ +D+ +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKSLNIDSKKWS 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ ++ 
Sbjct: 136 ERSILATISNAKNDLLDE 153


>gi|197116744|ref|YP_002137171.1| exodeoxyribonuclease V subunit beta [Geobacter bemidjiensis Bem]
 gi|197086104|gb|ACH37375.1| exodeoxyribonuclease V, beta subunit [Geobacter bemidjiensis Bem]
          Length = 1130

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +    LRL+L      S +L +T T+AA  E+  R+   +   +   
Sbjct: 16  LIEASAGTGKTFTIAGVYLRLVLEQKFDVSRILVVTFTEAATKELKERIRNKLKE-AENG 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
               + +   I+G   +  D S+AR LL + + +     + TIH FC+ ++Q  P E+  
Sbjct: 75  FLTGATDDFLIEGLLKSTQDHSEARRLLSSAIRSFDEAAIFTIHGFCQRMLQDNPFESG- 133

Query: 154 TSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEELKKA 191
               ++ D E      K++ E  +           EE   A
Sbjct: 134 ----SLCDTELVTDQGKILMEIAQDYWRINCYGQPEERIAA 170


>gi|227893040|ref|ZP_04010845.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM
           16047]
 gi|227865153|gb|EEJ72574.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM
           16047]
          Length = 748

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            SE   L S    ++           V A AGSGKT +L +R+  L+  N   P  +L +
Sbjct: 1   MSENSILASLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   ++   +                                      
Sbjct: 61  TFTNKAATEMRDREQGLLGPAAE------------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++   +   + +F+IAD  +   L++  +K  
Sbjct: 84  -NIWMSTFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130


>gi|254570639|ref|XP_002492429.1| DNA helicase and DNA-dependent ATPase [Pichia pastoris GS115]
 gi|238032227|emb|CAY70223.1| DNA helicase and DNA-dependent ATPase [Pichia pastoris GS115]
 gi|328353556|emb|CCA39954.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Pichia pastoris
           CBS 7435]
          Length = 802

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 34/157 (21%)

Query: 16  LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +++   S+Q  A  +D  +   + A  G+GKT +L  RV  LL+ +   PS ++  T TK
Sbjct: 1   MLASLNSQQYEAVTADIHKPLQIIAGPGTGKTKVLTSRVAYLLIEHKIPPSNIIVTTFTK 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +    +   D+ L                                GL 
Sbjct: 61  KAANEMVERLQVLFAKENLDPDKYLK-------------------------------GLL 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           + T H+ C  +++++  +  +T  F IADE  S  ++
Sbjct: 90  IGTFHSICVKLLRRYGTQIGLTPKFKIADERDSNTIL 126


>gi|254426856|ref|ZP_05040563.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881]
 gi|196193025|gb|EDX87984.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881]
          Length = 1198

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 19/189 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  L    LRL+L +           P  +L +T T+AA  E+  R+ + 
Sbjct: 18  LIEASAGTGKTFTLAALYLRLVLGHGDENGFSRPLLPPEILVVTFTEAATEELRERIRDR 77

Query: 86  ITA----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +      ++  + E     + ++        D ++    L    +      + TIH FC 
Sbjct: 78  LADAARIFADSNAEADDPVLAELLNDYSAPDDRARCAQRLEAAAQWMDEAAIYTIHGFCN 137

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++Q   ++   S F++  +E +    + A +    +I+     +   +    L+  N 
Sbjct: 138 RMLKQHAFDSG--SLFSLELQEDASDEQQMAARDYWRTII----SKFPVSAANALQSDNL 191

Query: 202 EDIETLISD 210
            + + L+  
Sbjct: 192 GNPDALLEA 200


>gi|258510684|ref|YP_003184118.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477410|gb|ACV57729.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 756

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 50/235 (21%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S+ +  +++ + E + A+D      V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 7   ASDILKGLNEKQREAVTATD--GPVLVIAGAGSGKTSVLTRRIAYLIAERRVPPWAILAI 64

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  ++   +                                      
Sbjct: 65  TFTNKAAREMEERIERLVGPVA-------------------------------------- 86

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             +   T HA C  I+++       TS F + D      L     +  +  + +D  +  
Sbjct: 87  SDIWTSTFHAMCARILRRDIHHLGYTSAFTVLDAADQVSL----VRRLMQEMNIDVRKFE 142

Query: 189 KKAFYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            +A    +    +E    E  +    S    +    +     + R++ E      
Sbjct: 143 PRAVLHAISQHKNELRSAEKALDLAGSPYDKMVGDVYL---AYERRLRENQALDF 194


>gi|206896426|ref|YP_002246429.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206739043|gb|ACI18121.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 696

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 44/173 (25%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65
           + E  +++DL    ++++   + P +   + A  GSGKT +L  R L  +   +  P  +
Sbjct: 32  YNEDVDSVDLSKLNEAQKQAVTAPPKPLAIIAGPGSGKTRVLTYRALFAVKEWHLPPERI 91

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA E+  R+  +I                                       
Sbjct: 92  LAITFTNKAADELKERLGRLI--------------------------------------- 112

Query: 126 ETPGGLKVQ--TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             P G ++   T+H+F   +++ F   A I+ +F I D++ SK LIE+  K  
Sbjct: 113 --PEGDRIFAATMHSFAARMLRYFAPYAGISQNFVIYDDDDSKGLIEDILKQM 163


>gi|146342459|ref|YP_001207507.1| DNA helicase II [Bradyrhizobium sp. ORS278]
 gi|146195265|emb|CAL79290.1| DNA helicase II [Bradyrhizobium sp. ORS278]
          Length = 865

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            ++    EQ  A +       V A AG+GKT +L  R+  +L    A P  +L +T T  
Sbjct: 36  YLAGLNPEQRDAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSMGRARPGEILSVTFTNK 95

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ E++                                          G   +
Sbjct: 96  AAREMKTRLAEMLGQAVE-------------------------------------GMPWL 118

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       + S+F + D +   +L+++     L +  +D+     +   
Sbjct: 119 GTFHSIAGRILRSHAELVQLKSNFTVLDVDDQIRLLKQ----LLQAENIDDKRWPARMLA 174

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 175 NLIDGWKNRGL 185


>gi|329770497|ref|ZP_08261875.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325]
 gi|328836246|gb|EGF85915.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325]
          Length = 728

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ++L+      QL A      +  V A AGSGKT +L  R+  L+   N   S +L +T T
Sbjct: 1   MNLVQNMNENQLKAILKTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNVLESNILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                       ET   +
Sbjct: 61  NKAAKEMKERIYSLVG--------------------------------------ETSKYI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+ C  I++Q         +F I D  + K +I+   K  
Sbjct: 83  WINTFHSMCVRILRQNIELLGYNKNFTILDVSEQKSIIKNILKEL 127


>gi|171464032|ref|YP_001798145.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193570|gb|ACB44531.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 788

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 51/198 (25%)

Query: 15  DLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           DL++    EQ  A           ++SA + A AG GKT +L  R+  L+      P  +
Sbjct: 4   DLLANLNPEQREAVTLPPVNENGQSQSALILAGAGGGKTRVLTTRIAWLIQTGQVSPIGV 63

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  R+  ++                                       
Sbjct: 64  LAVTFTNKAAKEMMLRLSAMLPI------------------------------------- 86

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
               G+ + T H  C  +++    EA + S F I D +        A K  L  + +D+ 
Sbjct: 87  -NTRGMWIGTFHGLCNRLLRAHHKEAGLPSTFQILDTQDQLS----AIKRLLKGLKVDDE 141

Query: 186 EELKKAFYEILEISNDED 203
           +   K     +  + +  
Sbjct: 142 KYPAKQLQYFIAHAKERG 159


>gi|302023661|ref|ZP_07248872.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68]
 gi|330832685|ref|YP_004401510.1| superfamily I DNA/RNA helicase [Streptococcus suis ST3]
 gi|329306908|gb|AEB81324.1| superfamily I DNA/RNA helicase [Streptococcus suis ST3]
          Length = 759

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 51/211 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYALNPATQACL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRSLM----KRILKNLNLDPKKWS 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISN 214
           +++    +     ++ +D+  E    D+ + 
Sbjct: 136 ERSILGTISNAKNDLIDDKAFEAQAGDLYTQ 166


>gi|315037777|ref|YP_004031345.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112]
 gi|312275910|gb|ADQ58550.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112]
          Length = 748

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++    +Q  A + T     V A AGSGKT +L +R+  L+  N   P  +L +T T  A
Sbjct: 7   LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R  +++   +                                        + + 
Sbjct: 67  ATEMREREQKLLGPAAE--------------------------------------NIWMS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++   +   + +F+IAD  +   L++  +K  
Sbjct: 89  TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130


>gi|296132369|ref|YP_003639616.1| ATP-dependent DNA helicase PcrA [Thermincola sp. JR]
 gi|296030947|gb|ADG81715.1| ATP-dependent DNA helicase PcrA [Thermincola potens JR]
          Length = 741

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 43/185 (23%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +    ++           + A AGSGKT +L  R+  L+      P  +L +T T  AA 
Sbjct: 5   NLNPEQKEAVEWTEGPLLILAGAGSGKTRVLTYRIAHLIHRKGVSPRNILAITFTNKAAQ 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV   +   S                                        L V T 
Sbjct: 65  EMKERVERFLGYDSR--------------------------------------DLWVCTF 86

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+ C  I++    +     +F I D    + L+    K+ L  + +D+ +   +A   ++
Sbjct: 87  HSACVRILRMEIEKLGYGRNFVIYDSADQQTLL----KNCLKELNIDDKKYPPRAMQVLI 142

Query: 197 EISND 201
             + +
Sbjct: 143 SQAKN 147


>gi|323351871|ref|ZP_08087522.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66]
 gi|322121928|gb|EFX93660.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66]
          Length = 762

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 46/195 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++ ++  ++E +  ++      + A AGSGKT +L+ R+  L+     +P  +L +T T
Sbjct: 4   LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLIHRIAYLIDEKMVNPWNILAITFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R                                   A  L     +     
Sbjct: 62  NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A
Sbjct: 84  -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138

Query: 192 FYEILEISNDEDIET 206
               +  + ++ I+ 
Sbjct: 139 ILGTISNAKNDLIDE 153


>gi|260662791|ref|ZP_05863685.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN]
 gi|260552872|gb|EEX25871.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN]
          Length = 756

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 41/168 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           ++   ++ ++  +SE +L ++      V A AGSGKT +L  R+  L+   +  P  +L 
Sbjct: 2   QNQSMLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV +++                                       E 
Sbjct: 60  ITFTNKAAREMKERVAKLLG--------------------------------------EA 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + V T HA C  I+++   +      F IAD  + + LI+   + 
Sbjct: 82  GNDVWVSTFHAMCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEE 129


>gi|305667011|ref|YP_003863298.1| putative helicase [Maribacter sp. HTCC2170]
 gi|88709246|gb|EAR01480.1| putative helicase [Maribacter sp. HTCC2170]
          Length = 787

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 38/172 (22%)

Query: 6   SFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           + Q+     + + +    Q            V A AGSGKT +L  R+  L+        
Sbjct: 5   TVQKIIVLKNFLDELNDAQKAPVLHKDGPLMVIAGAGSGKTRVLTYRIAHLMAQGVDSFN 64

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T  AA EM  R+ EI+ +    +                               
Sbjct: 65  ILALTFTNKAAREMKKRIAEIVGSSEAKN------------------------------- 93

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 L + T H+    +++    +    S+F I D + S++LI    K  
Sbjct: 94  ------LWMGTFHSVFAKLLRFDGDKLGYPSNFTIYDTQDSQRLIASIIKEM 139


>gi|2618592|dbj|BAA23380.1| UvrD [Thermus thermophilus]
          Length = 692

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 56/163 (34%), Gaps = 41/163 (25%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L++     Q  A       A V A AGSGKT  +V RV  L+      PS +L +T T  
Sbjct: 5   LLAPLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                          G + V
Sbjct: 65  AAEEMRERLRGLVPGA---------------------------------------GEVWV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA    I++ +     +   F + DE+    L++E  K  
Sbjct: 86  STFHAAALRILRVYGERVGLRPGFVVYDEDDQTALLKEVLKEL 128


>gi|304314662|ref|YP_003849809.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588121|gb|ADL58496.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 918

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 57/240 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           I  T  ++      T    V A  G+GKT I+V+RV +L+      P +L+ +T TK AA
Sbjct: 5   IQLTDEQRRAVEHFTGPMLVVAGPGAGKTRIIVERVAQLIEERGVDPGSLVVITFTKKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+L  + + +                                        +++ T
Sbjct: 65  DELKERILGRVGSRAE--------------------------------------EMQIST 86

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------LASIMLD 183
           IH+FC  I++ +P    + SHF + DEE+    I + ++              L +   +
Sbjct: 87  IHSFCNRILRTYPDHHPLGSHFHVLDEEKQLMFIYDHREELGLAHTPRERFVKLQAFFSE 146

Query: 184 NNEEL--KKAFYEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLWR-RKIIEKS 237
             E +   +A  E       + IE + +        L   K +  F    W+  K++E  
Sbjct: 147 CQENMIEPEALLEYHRSHGSKRIEIVAAKAYGKYLKLMEEKRVLDFSGMQWQVVKLLESD 206


>gi|227498671|ref|ZP_03928815.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21]
 gi|226904127|gb|EEH90045.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21]
          Length = 750

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 42/166 (25%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL+S   ++Q  A         + A AGSGKT  L  R+  LL     P ++L +T T  
Sbjct: 3   DLLSSLNTQQAEAVKHVAGPILILAGAGSGKTKALTTRIAYLLEKGVPPYSILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++   +                                        + +
Sbjct: 63  AAKEMRERVDKLVGPLAK--------------------------------------DVWL 84

Query: 134 QTIHAFCEAIMQQFPLEA---NITSHFAIADEEQSKKLIEEAKKST 176
            T H FC  ++++           + F+I D    K +++   K  
Sbjct: 85  YTFHGFCNQLLRREIKHLSHYGYGTGFSIYDTTDCKNVLKGILKDL 130


>gi|86749818|ref|YP_486314.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86572846|gb|ABD07403.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
          Length = 686

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 58/168 (34%), Gaps = 38/168 (22%)

Query: 16  LISQTKSEQLLASDPT------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            +     EQ  A +            V A AGSGKT+ L  RV  L++  A P  +L +T
Sbjct: 7   YLDGLNPEQRCAVEHGVGQSSCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMT 66

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            ++ AAAEM+ RV  I                               AR ++       G
Sbjct: 67  FSRRAAAEMTRRVERI-------------------------------ARRVMGDGAARGG 95

Query: 130 GL-KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            L    T H     ++++      +   F I D E S  L+   +   
Sbjct: 96  ALSWAGTFHGIGARLLREHAERIGLDPAFTIHDREDSADLMNLVRHDL 143


>gi|254362549|ref|ZP_04978650.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213]
 gi|153094150|gb|EDN75046.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213]
          Length = 1174

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 17/179 (9%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHRVLEII 86
            +S  + A+AG+GKT  +    LRLLL    +P     +L +T TKAA  E+ +R+ + I
Sbjct: 12  NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71

Query: 87  TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV----------QT 135
              +  L D+    E+   +  + N   +++   L+  I E    L +           T
Sbjct: 72  QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           IH FC+ ++ QF  E+ +   F +  +     L+++  +          +  +  A  E
Sbjct: 132 IHGFCQKMLVQFAFESGV--RFDLDLQPNQSDLLKKLSEEVWREQFYPQDLAITYAVAE 188


>gi|315656421|ref|ZP_07909310.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492980|gb|EFU82582.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 877

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +  +D ++    +    +  +    V A AGSGKT +L +R+  LL      P  +L +T
Sbjct: 59  AAIVDGLN--PEQHAAVTHESGPLLVMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAIT 116

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV  ++   +                                       
Sbjct: 117 FTNKAAAEMRQRVESLVGNAAKY------------------------------------- 139

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + V T H+ C  I++       +T  F+I D   +K L+    K
Sbjct: 140 -MWVSTFHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIK 183


>gi|312278340|gb|ADQ62997.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus ND03]
          Length = 770

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 49/198 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    +Q  A         + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 4   LLTGMNDQQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R + +  A S                                          +
Sbjct: 64  AAREMRERAVALNPATSETL---------------------------------------I 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A  
Sbjct: 85  ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 140

Query: 194 EILEISNDEDIETLISDI 211
             +  + ++    L+ +I
Sbjct: 141 GTISNAKND----LLDEI 154


>gi|313673050|ref|YP_004051161.1| ATP-dependent DNA helicase pcra [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939806|gb|ADR18998.1| ATP-dependent DNA helicase PcrA [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 677

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 41/161 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D ++ T+ + +L +D      V A AG+GKT ++  ++  LL      P  +L +T T  
Sbjct: 7   DDLNSTQKDAILYND--GPLLVIAGAGTGKTRVITYKIAYLLKEMGIPPENILAVTFTNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV+ ++                                           G+ +
Sbjct: 65  AADEMLKRVVHLVGKSGK--------------------------------------GIWI 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            T H+    ++++      + S+F++ D++    +I E  K
Sbjct: 87  GTFHSVALRMLRRDGHLLGLPSNFSVIDQDDRIAVIREILK 127


>gi|297566348|ref|YP_003685320.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296850797|gb|ADH63812.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 726

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            +++Q         A V A AGSGKT  +V R+  LL  +  +   +L +T T  AA EM
Sbjct: 16  NEAQQAAVKHFEGPALVVAGAGSGKTRTVVHRIAYLLREHRVYAGEILAVTFTNKAAGEM 75

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +++   +H                                       L V T H+
Sbjct: 76  KERLGKMVGRAAH--------------------------------------DLWVSTFHS 97

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               I++ +     +   F + D++    L++E  K  
Sbjct: 98  AALRILRVYGEWVGLKPGFVVYDDDDQNTLLKEILKDL 135


>gi|255015776|ref|ZP_05287902.1| ATP-dependent helicase [Bacteroides sp. 2_1_7]
 gi|298377090|ref|ZP_06987044.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19]
 gi|298266074|gb|EFI07733.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19]
          Length = 1055

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AG+GKTH L    L LL +       +L +T T  A  EM  R+++ +   +      
Sbjct: 7   ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLAS-GRAS 65

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              ++         +    +AR +L+ IL       + TI  F +  M+ F  E  +   
Sbjct: 66  DYIQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214
           + I  E   + ++ EA  + LA +    +++L        E    D    +L  DI+S +
Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAENKIEDGGGWSLRQDIMSLS 183

Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240
           R   K  +  FS    + I +K    
Sbjct: 184 REVFKESYKAFSEEVGKDIADKQALD 209


>gi|262198052|ref|YP_003269261.1| exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
 gi|262081399|gb|ACY17368.1| Exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
          Length = 1284

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHR 81
             L A DP R   V A+AG+GKT+++  RV+ LLL+   P   +L +T T+ A AE+  R
Sbjct: 36  RALAALDPERHQVVEASAGTGKTYLIEHRVVDLLLSTDTPIEQILVVTFTEKATAELRFR 95

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V  +I   +       +A         P+    ++AR  L   +       + TIHAFC+
Sbjct: 96  VRRLIENVA-------AARQHTAAEDAPHWRIDAEARRKLTDAMLGFDRAAIHTIHAFCQ 148

Query: 142 AIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            ++ +    +  + +   +A E       + A +  LA    D+++    A+Y      +
Sbjct: 149 RVLTENAFSSRRLFAQTQVAGEAAFGDAFKAALREELAR--EDDHKRYLAAWYRSGRSVD 206

Query: 201 DEDIETLI 208
           D  +E L+
Sbjct: 207 D--LEKLL 212


>gi|319638964|ref|ZP_07993722.1| DNA helicase II [Neisseria mucosa C102]
 gi|317399868|gb|EFV80531.1| DNA helicase II [Neisseria mucosa C102]
          Length = 735

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +L+    +EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T 
Sbjct: 9   NLLQGLNTEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A +   F I D      LI+   K+ 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPLSFQILDSGDQLSLIKRLLKNL 134


>gi|258545647|ref|ZP_05705881.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
 gi|258519114|gb|EEV87973.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
          Length = 723

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 41/168 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           + SE +  +++ + E    + P R+  V A AGSGKT +LVQR+  L+ +    P  LL 
Sbjct: 2   DVSEILQGLNERQRE--AVTHPARAMRVIAGAGSGKTRVLVQRMQWLMAVEGVSPYGLLA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  AA EM  R+   +                                         
Sbjct: 60  LTFTNKAAREMRQRLEAALQRP-------------------------------------- 81

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            G L + T H  C  I+++  L       F I D +   +L++   ++
Sbjct: 82  LGQLWMGTFHGICHRILRRHALLMQWPEQFVIMDSDDQLRLVKRMMRA 129


>gi|261495059|ref|ZP_05991526.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309301|gb|EEY10537.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 1174

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 17/179 (9%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHRVLEII 86
            +S  + A+AG+GKT  +    LRLLL    +P     +L +T TKAA  E+ +R+ + I
Sbjct: 12  NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71

Query: 87  TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV----------QT 135
              +  L D+    E+   +  + N   +++   L+  I E    L +           T
Sbjct: 72  QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           IH FC+ ++ QF  E+ +   F +  +     L+++  +          +  +  A  E
Sbjct: 132 IHGFCQKMLVQFAFESGV--RFDLDLQPNQSDLLKKLSEEVWREQFYPQDLAITYAVAE 188


>gi|323342977|ref|ZP_08083208.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463041|gb|EFY08236.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 715

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 52/195 (26%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D I     EQ  A     +   V A AGSGKT +L  R++ L+     +PS +  +T T
Sbjct: 1   MDYIQGLNKEQKEAVLTKAKHVRVIAGAGSGKTRVLTTRIVHLIADLGYYPSKICAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                                         P  +
Sbjct: 61  NKAANEMKERMEAML-----------------------------------------PDAI 79

Query: 132 KV--QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           +V   TIH+ C  I+++     N+  +F I D    + ++ EA K         + +   
Sbjct: 80  RVHTSTIHSLCVRIIREEYEALNLVRNFTILDTSDQQAVMREAYKQF-------DYDRKD 132

Query: 190 KAFYEILEISNDEDI 204
            +F E L   ++   
Sbjct: 133 ISFREALTYISNNKF 147


>gi|227432451|ref|ZP_03914438.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351772|gb|EEJ42011.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 749

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 45/191 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            I  ++  +SE +  ++      + A AGSGKT +L  R+  L+   N +P  +L +T T
Sbjct: 6   LIQGMNDKQSEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAHLVQDKNVYPWRILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +++                          D   AR            +
Sbjct: 64  NKAAREMRERIAQLV--------------------------DPEIARE-----------I 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKK 190
            V T HA    I+++      +  +F I D    + L+    K  +  + LD N+ + + 
Sbjct: 87  WVSTFHAMAVRILRRDGERIGLARNFTIIDTSAQRTLM----KRVINDLNLDTNQYDPRT 142

Query: 191 AFYEILEISND 201
               +    ND
Sbjct: 143 ILGTVSNAKND 153


>gi|304390802|ref|ZP_07372754.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325685|gb|EFL92931.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 877

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
           +  +D ++    +    +  +    V A AGSGKT +L +R+  LL      P  +L +T
Sbjct: 59  AAIVDGLN--PEQHAAVTHESGPLLVMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAIT 116

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV  ++   +                                       
Sbjct: 117 FTNKAAAEMRQRVESLVGNAAKY------------------------------------- 139

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + V T H+ C  I++       +T  F+I D   +K L+    K
Sbjct: 140 -MWVSTFHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIK 183


>gi|283953895|ref|ZP_06371425.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794674|gb|EFC33413.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 392

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 3/129 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + ++AGSGKT  L  R + L+L  A  + +L LT TK AA EM  R++E        +
Sbjct: 8   LALESSAGSGKTFALSVRFVALILKGAKINEILALTFTKKAANEMQKRIVETFLNLEKEN 67

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 E+ K+  K   K  +S         L T   LK+ T  AF   I++ F L   +
Sbjct: 68  KTSECNELCKLLDKSK-KELISLRDTKKEEFLRT--ELKISTFDAFFGKILRVFALNLGL 124

Query: 154 TSHFAIADE 162
           +S F +++E
Sbjct: 125 SSDFTMSEE 133


>gi|255994849|ref|ZP_05427984.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
 gi|255993562|gb|EEU03651.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
          Length = 753

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 38/176 (21%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59
           M+      E SE +  ++  + +   A        V A AGSGKT ++  R+  L+L  N
Sbjct: 1   MLEKPKINEESEILKSLNDMQKQ--GAVTTEGPLLVLAGAGSGKTKMMTHRMAYLILEKN 58

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P  +L +T T  AA EM  R                                   A  
Sbjct: 59  VDPQNILAVTFTNKAANEMKQR-----------------------------------AEF 83

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           L+ +   +  GL ++T HA C AI++          +F I      K  ++ A K 
Sbjct: 84  LIHSRGRSLKGLWIKTFHATCLAILKNHAGALGYGENFLIYTASDQKAAVKRAIKE 139


>gi|225848053|ref|YP_002728216.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644159|gb|ACN99209.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 700

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 43/198 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++  + E +L         V A AGSGKT ++  +++ L+ +       +L +T T
Sbjct: 6   ILDGLNDRQKEAVL--HFESPLLVLAGAGSGKTKVITHKIMYLVKSLGIPIHRILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV + +                                             
Sbjct: 64  NKAAEEMKERVEKALGERPQ---------------------------------------- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+F    ++    +     +F I DE+ SKKLI++  K    +  L   +++K  
Sbjct: 84  WVMTFHSFAAKFLRFEAEKVGYDRNFVIYDEDDSKKLIKKVLKDLNLNEELIKPDKVKDY 143

Query: 192 FYEILEISNDEDIETLIS 209
             +I +  N E+   L+S
Sbjct: 144 ISKIKQEDNPEEYLDLLS 161


>gi|116627783|ref|YP_820402.1| superfamily I DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101060|gb|ABJ66206.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus LMD-9]
          Length = 770

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 49/198 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    +Q  A         + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 4   LLTGMNDQQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R + +  A S                                          +
Sbjct: 64  AAREMRERAVALNPATSETL---------------------------------------I 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A  
Sbjct: 85  ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 140

Query: 194 EILEISNDEDIETLISDI 211
             +  + ++    L+ +I
Sbjct: 141 GTISNAKND----LLDEI 154


>gi|56962858|ref|YP_174585.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16]
 gi|56909097|dbj|BAD63624.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii
           KSM-K16]
          Length = 751

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 43/184 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q   +       + A AGSGKT +L  R+  LL  +   P  +L LT T  AA EM
Sbjct: 17  NPEQQKAVTHSNGPLLLMAGAGSGKTRVLTYRISYLLRRHSTPPWAVLALTFTNKAAREM 76

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   +                                        + + T H+
Sbjct: 77  KDRVAQLVGPIAE--------------------------------------DIWISTFHS 98

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++++       + +F I D      +I++     L S  +D  +   KA   ++  
Sbjct: 99  MCVRMLRRDIDRIGYSRNFTILDSSDQLSVIKQ----ILKSQNVDPKKFDPKAILGMISA 154

Query: 199 SNDE 202
           + +E
Sbjct: 155 AKNE 158


>gi|229003980|ref|ZP_04161785.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4]
 gi|228757256|gb|EEM06496.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4]
          Length = 1182

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 32/175 (18%)

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             LL +T T AAA EM +R+ E +                K+   +P    + K   LL 
Sbjct: 2   DRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSGHVRKQLSLL- 45

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM- 181
                     + TIH+FC  +++ +    ++   F IA++ +++ L EE     L     
Sbjct: 46  ------NKASISTIHSFCLQVIRTYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYG 99

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++ N+   +         +D D++ +I         L L     ++    K ++K
Sbjct: 100 IEGNDIFFELVDRYTSDRSDNDLQRMI---------LALHTESRAHPDPEKWLDK 145


>gi|299069674|emb|CBJ40950.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CMR15]
          Length = 710

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 64/177 (36%), Gaps = 31/177 (17%)

Query: 9   EHSETIDLISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           E +   D ++Q   +Q LA +          T    V A AGSGKTH L  RV  L+   
Sbjct: 9   ETAPAPDYLAQLNDQQRLAVEFGISGPDAAQTGPLLVLAGAGSGKTHTLGWRVAHLVANG 68

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  +L LT ++ AA+E+S R   ++      S    SA  T  +   P          
Sbjct: 69  ADPQRILLLTFSRRAASELSSRAGHLLARALQGSAGARSAAGTAYRTALP---------- 118

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                          T H     +++++     +   F I D   +  L+   +   
Sbjct: 119 ------------WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDAADLLNVVRHEL 163


>gi|315652267|ref|ZP_07905259.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986]
 gi|315485390|gb|EFU75780.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986]
          Length = 733

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
            S   D ++  + +            + A AGSGKT +L+ R+  L+   +  P  ++ +
Sbjct: 1   MSTIYDKLNDKQKQ--AVFTTEGPLLLLAGAGSGKTGVLMHRIAYLINEKHIDPYNIMAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  +I    +                                     
Sbjct: 59  TFTNKAAKEMKERITNLIGGDGNF------------------------------------ 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + V T H+ C   +++F  +    ++F I D +  + L+++  K 
Sbjct: 83  --VWVMTFHSSCVRFLRRFIDKIGFDNNFTIYDSDDQRTLMKKIFKE 127


>gi|261493834|ref|ZP_05990348.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261310537|gb|EEY11726.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 1174

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 17/179 (9%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHRVLEII 86
            +S  + A+AG+GKT  +    LRLLL    +P     +L +T TKAA  E+ +R+ + I
Sbjct: 12  NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71

Query: 87  TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV----------QT 135
              +  L D+    E+   +  + N   +++   L+  I E    L +           T
Sbjct: 72  QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           IH FC+ ++ QF  E+ +   F +  +     L+++  +          +  +  A  E
Sbjct: 132 IHGFCQKMLVQFAFESGV--RFDLDLQPNQSDLLKKLSEEVWREQFYPQDLAITYAVAE 188


>gi|55822939|ref|YP_141380.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55738924|gb|AAV62565.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 775

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 49/198 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    +Q  A         + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 10  LLTGMNDQQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNK 69

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R + +  A S                                          +
Sbjct: 70  AAREMRERAVALNPATSETL---------------------------------------I 90

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A  
Sbjct: 91  ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 146

Query: 194 EILEISNDEDIETLISDI 211
             +  + ++    L+ +I
Sbjct: 147 GTISNAKND----LLDEI 160


>gi|17549495|ref|NP_522835.1| ATP-dependent DNA helicase II protein [Ralstonia solanacearum
           GMI1000]
 gi|17431748|emb|CAD18427.1| probable atp-dependent dna helicase II protein [Ralstonia
           solanacearum GMI1000]
          Length = 710

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 64/177 (36%), Gaps = 31/177 (17%)

Query: 9   EHSETIDLISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           E +   D ++Q   +Q LA +          T    V A AGSGKTH L  RV  L+   
Sbjct: 9   ETAPAPDYLAQLNDQQRLAVEFGISGADAAQTGPLLVLAGAGSGKTHTLGWRVAHLVANG 68

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  +L LT ++ AA+E+S R   ++      S    SA  T  +   P          
Sbjct: 69  ADPQRILLLTFSRRAASELSSRAGHLLARALQGSAGARSAAGTAYRTALP---------- 118

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                          T H     +++++     +   F I D   +  L+   +   
Sbjct: 119 ------------WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDAADLLNVVRHEL 163


>gi|195941740|ref|ZP_03087122.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia
           burgdorferi 80a]
          Length = 659

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNDSDIR 200


>gi|169824265|ref|YP_001691876.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328]
 gi|167831070|dbj|BAG07986.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328]
          Length = 725

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 42/198 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ++L +    ++    +      + A AGSGKT +L  ++   L         +L +T T
Sbjct: 1   MMNLDNLNDRQREAVENTDGPMLILAGAGSGKTKVLTTKIAYCLEKGLCSKYEILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  I+                                       E    +
Sbjct: 61  NKAAKEMKERVENILQ--------------------------------------ENVDSM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T HA C  I++          +F + D      L++E  K      +   N E+K  
Sbjct: 83  WIGTFHAICSRILRVEIERIGFERNFTVYDRADQISLVKECLKDM---GVDPKNVEIKNE 139

Query: 192 FYEILEISNDEDIETLIS 209
              I  + N    E  I 
Sbjct: 140 INTISRLKNAGATEKNID 157


>gi|115472169|ref|NP_001059683.1| Os07g0492100 [Oryza sativa Japonica Group]
 gi|34393626|dbj|BAC83302.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group]
 gi|50508450|dbj|BAD30552.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group]
 gi|113611219|dbj|BAF21597.1| Os07g0492100 [Oryza sativa Japonica Group]
 gi|218199642|gb|EEC82069.1| hypothetical protein OsI_26061 [Oryza sativa Indica Group]
          Length = 1165

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 45/194 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +++ E +  ++  + E    SD T    + A  GSGKT  +V RVL LL     PS +L 
Sbjct: 278 KKYYEYLQSLNDRQREA-ACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNILA 336

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T AAA+EM  R+  ++                                         
Sbjct: 337 MTFTTAAASEMRDRIGTVVGKAVAKE---------------------------------- 362

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE-------QSKKLIEEAKKSTLASI 180
              + + T H+FC  + +    +   TS F I           ++++L+E  K + L   
Sbjct: 363 ---IVISTFHSFCLQLCRTHAEKLGRTSEFIIYGNGQQRRAVIEAERLLESDKNNGLGDA 419

Query: 181 MLDNNEELKKAFYE 194
             + + ++K +F +
Sbjct: 420 NKNCDGDIKNSFKD 433


>gi|320102499|ref|YP_004178090.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644]
 gi|319749781|gb|ADV61541.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644]
          Length = 1214

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 82/207 (39%), Gaps = 29/207 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-----RLLLANAH-PSTLLCLTHTKA 73
           T+ +            +S+ AG GKT +L +R++     RLL  + H    ++ +T T A
Sbjct: 15  TEQQAEAVKYRAGHLALSSGAGCGKTTVLSERLIAEYRERLLHTDFHDLRRVVAVTFTDA 74

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+ +R+                        K  +     +   +   +L       +
Sbjct: 75  AARELLNRIRHC-------------------AWKSVDSKTNDRLACVWKNMLRGLDAAPI 115

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+FC  ++++  L   I   F IA+E  +  L   A    L  ++ +N+++L+    
Sbjct: 116 GTFHSFCGRLIRRHALALGIDPAFTIANETLTPTLKSRAVVRCLRHLLTNNDDDLQI--- 172

Query: 194 EILEISNDEDIETLISDIISNRTALKL 220
                     +  ++ +I+ +R A+ L
Sbjct: 173 -FAVEEGLPAVRAMLEEILDDRDAVDL 198


>gi|195978018|ref|YP_002123262.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974723|gb|ACG62249.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 765

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +D ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLDGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMRER----------------------ALALSPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L++   K    ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVK----ALNLDPKKWS 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ ++ 
Sbjct: 136 ERSILATISNAKNDLLDE 153


>gi|322411887|gb|EFY02795.1| DNA helicase II [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 772

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIIDTGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++    +     ++ +++  E   +D+ S   A +    +   L R + ++
Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186


>gi|225012049|ref|ZP_03702486.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
 gi|225003604|gb|EEG41577.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
          Length = 1059

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 8/185 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            ++A AGSGKT+ LV R L  LL    +     LL LT T  A  EM  R+LE +   S+
Sbjct: 20  IINAAAGSGKTYTLVLRYLIQLLGSKNSKSYRNLLALTFTNKAVNEMKERILETLLDLSN 79

Query: 92  LSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            S +  +   T          ++++ A  +L  IL   G   + T+  F   I++ F  E
Sbjct: 80  NSLKENNIGETLCSELNIEPIELARKADKMLHQILFEYGSFDIITLDKFTHRIIRSFSRE 139

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE--LKKAFYEILEISNDEDIETLI 208
             +   F +      K L+EE   S +  +  + +    L     + +  +   +I+  +
Sbjct: 140 LQLPYGFEVV--LDPKSLLEETVNSIIDKVGKEESLTRLLTDFSLDKVNQNQSWNIQKDL 197

Query: 209 SDIIS 213
            D  S
Sbjct: 198 DDFAS 202


>gi|255037536|ref|YP_003088157.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
 gi|254950292|gb|ACT94992.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
          Length = 755

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 40/167 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            H++ +  +++ + E +L         + A AGSGKT +L  R+ RL+     P  +L L
Sbjct: 2   NHNDYLSTLNEPQREAVL--HGNGPLMIIAGAGSGKTRVLTYRIARLIETGVDPFRILSL 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  A+ EM  R+   +   +                                      
Sbjct: 60  TFTNKASGEMRSRIEGAVGTEAR------------------------------------- 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + + T H+    I++        TS F+I D + SK L+    K 
Sbjct: 83  -NIWMGTFHSVFAKILRIEARYLGYTSDFSIYDTDDSKSLLRSIIKE 128


>gi|228996315|ref|ZP_04155959.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17]
 gi|228763419|gb|EEM12322.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17]
          Length = 1182

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 32/175 (18%)

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             LL +T T AAA EM +R+ E +                K+   +P    + K   LL 
Sbjct: 2   DRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSGHVRKQLSLL- 45

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM- 181
                     + TIH+FC  +++ +    ++   F IA++ +++ L EE     L     
Sbjct: 46  ------NKASISTIHSFCLQVIRTYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYG 99

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++ N+   +         +D D++ +I         L L     ++    K ++K
Sbjct: 100 IEGNDIFFELVDRYTSDRSDNDLQRMI---------LALHTESRAHPDPEKWLDK 145


>gi|325281708|ref|YP_004254250.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
 gi|324313517|gb|ADY34070.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
          Length = 756

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++ I++  S +Q    +    + V A AGSGKT +L  R+ +LL        +L LT T 
Sbjct: 1   MNFINELNSSQQEAVINTEGPSLVIAGAGSGKTRVLTYRIAQLLSQGVPAYKILALTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ E++                                       E    L 
Sbjct: 61  KAAREMQKRIAELVGQ-------------------------------------EIAANLW 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++    +   TS + I D + SK +I+   K  
Sbjct: 84  MGTFHSIFSKILRFEAEKLGYTSSYTIYDTQDSKNMIKAIVKDM 127


>gi|66360164|ref|XP_627217.1| UvrD like super family I helicase involved in nucleotide excision
           repair, possible bacterial horizontal transfer
           [Cryptosporidium parvum Iowa II]
 gi|46228624|gb|EAK89494.1| UvrD like super family I helicase involved in nucleotide excision
           repair, possible bacterial horizontal transfer
           [Cryptosporidium parvum Iowa II]
          Length = 917

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 14/161 (8%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++ + ++   S  + A  G+GKT  L  R++R LL+   P  +L LT TK AA E+ 
Sbjct: 36  LEQKKAVFTNHESSLLIVAGPGTGKTATLTSRIVRFLLSGYSP--ILALTFTKKAANELK 93

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV  + ++ S +           ++ +K                + TP  + + TIH+F
Sbjct: 94  SRVSIVYSSSSKIIYSKSKQIKNDLRNEKG-----------FSDFVPTP-EIFIGTIHSF 141

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           C  +++++     +    AI D+E + KL++      L+ +
Sbjct: 142 CWKLLKEYGSFIGLPKDIAIIDKELAIKLLKSCLSENLSKV 182


>gi|55821019|ref|YP_139461.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737004|gb|AAV60646.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 775

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 49/198 (24%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    +Q  A         + A AGSGKT +L  R+  L+     +P  +L +T T  
Sbjct: 10  LLTGMNDQQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNK 69

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R + +  A S                                          +
Sbjct: 70  AAREMRERAVALNPATSETL---------------------------------------I 90

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A  
Sbjct: 91  ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 146

Query: 194 EILEISNDEDIETLISDI 211
             +  + ++    L+ +I
Sbjct: 147 GTISNAKND----LLDEI 160


>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
 gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
          Length = 870

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 49/212 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++      PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV+ I+   +                                        + ++
Sbjct: 61  CKEMSDRVMRIVGGEAK--------------------------------------DITIR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREIISKLSYYYATSNLMATNMQIQKVID 142

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216
                 A  E LE    ++ +T+I +I   R 
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174


>gi|325266832|ref|ZP_08133503.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella
           denitrificans ATCC 33394]
 gi|324981573|gb|EGC17214.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella
           denitrificans ATCC 33394]
          Length = 782

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 64/203 (31%), Gaps = 44/203 (21%)

Query: 6   SFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           SF E +    L++    EQL A   P +S  V A AGSGKT +L  R+  LL    A  +
Sbjct: 46  SFSEQNPHFSLLNHLNPEQLSAVTYPAQSVLVLAGAGSGKTRVLTTRIAWLLQNGMAGVN 105

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  R+  ++                                     
Sbjct: 106 NILAVTFTNKAAKEMQTRLGAMLPV----------------------------------- 130

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              +   + + T H  C   +     +A +   F I D            K  L  + + 
Sbjct: 131 ---SLRAMWLGTFHGLCHRFLCLHYRDAQLPQSFQILDASDQLA----VVKRLLKQLGIA 183

Query: 184 NNEELKKAFYEILEISNDEDIET 206
                 +     +    +  +  
Sbjct: 184 EETVAPRVLQGFINAQKESGLRA 206


>gi|223932458|ref|ZP_03624460.1| ATP-dependent DNA helicase PcrA [Streptococcus suis 89/1591]
 gi|223898912|gb|EEF65271.1| ATP-dependent DNA helicase PcrA [Streptococcus suis 89/1591]
          Length = 759

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 51/211 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYALNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRSLM----KRILKNLNLDPKKWS 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISN 214
           +++    +     ++ +D+  E    D+ + 
Sbjct: 136 ERSILGTISNAKNDLIDDKAFEAQAGDLYTQ 166


>gi|315649755|ref|ZP_07902838.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453]
 gi|315274729|gb|EFU38110.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453]
          Length = 776

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 45/192 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           E +  ++  + + + A+D      + A AGSGKT +L  R+  L+    A P ++L +T 
Sbjct: 8   EAVKRLNPEQRKAVEATD--GPLLIMAGAGSGKTRVLTHRIGYLIATRKAAPWSILAITF 65

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV +++                                            
Sbjct: 66  TNKAAREMQERVSKLVGREGQ--------------------------------------D 87

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H+ C  I+++       TS+F+I D      +I    ++ +    +D  +   K
Sbjct: 88  IWVSTFHSMCVRILRKDIERIGFTSNFSILDSTDQLSVI----RNVMKHHNIDPKKFEPK 143

Query: 191 AFYEILEISNDE 202
           A    +  + +E
Sbjct: 144 AVQAAMSAAKNE 155


>gi|322516818|ref|ZP_08069720.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC
           49124]
 gi|322124655|gb|EFX96119.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC
           49124]
          Length = 773

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +  ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 5   MNPLLTGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAI 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R + +  A S                                      
Sbjct: 63  TFTNKAAREMRERAMALNPATSETL----------------------------------- 87

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 88  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 139

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ ++ 
Sbjct: 140 ERAILGTISNAKNDLLDE 157


>gi|217076812|ref|YP_002334528.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus
           TCF52B]
 gi|217036665|gb|ACJ75187.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus
           TCF52B]
          Length = 1041

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 28/159 (17%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH------PSTLLCLTHTKAAAAEMSHRV 82
           D  ++ ++SA+AG+GKT  +    + +L              ++ +T T+ AAAEM  R+
Sbjct: 10  DINKNYFISASAGTGKTFTITNYYVEILKKYEKENYPEIVDEIVVVTFTRKAAAEMKERI 69

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           ++++                        +   SK +     +        + TI +FC+ 
Sbjct: 70  VKLVNE----------------------EFSQSKNKEYWSKVKNNLSRAIISTIDSFCQR 107

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           I+++  + A I   F+I    + +K IE A   TL  + 
Sbjct: 108 ILREENINAKIDPSFSIISNAKMEKYIERAVFLTLRYVF 146


>gi|224532709|ref|ZP_03673326.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23]
 gi|224512327|gb|EEF82711.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23]
          Length = 659

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|332035180|gb|EGI71690.1| exodeoxyribonuclease V beta chain [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 1192

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 14/172 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LR LL                +L +T T AA  E+  RV   
Sbjct: 16  LIEASAGTGKTYTITGLYLRYLLGMQIEGELNTPLSVEQILVVTFTDAATQEIKDRVRSR 75

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I A           +   I+G      D  +A  LL    ++     + TIH FC+ +++
Sbjct: 76  IIAARDALLGQDPND-ELIEGVIAKIDDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134

Query: 146 QFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           Q   E+ +  +   I DE     ++ E  K    + +   N+E   A  ++ 
Sbjct: 135 QHAFESGVAFNLEFILDERD---ILLETIKDFWRAFVYPLNKERTDAILDVF 183


>gi|227485018|ref|ZP_03915334.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237015|gb|EEI87030.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC
           51172]
          Length = 731

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +D ++  + E +L  D      V A AGSGKT +L   +   +      P  ++ +T T 
Sbjct: 3   LDRLNDRQKEAVLHKD--GPLLVLAGAGSGKTSVLTSSIAYKIKEESVDPRNIIAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                                            L 
Sbjct: 61  KAANEMKERVSSLLDMDV--------------------------------------AYLW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I++    +   +++F I D +  + LI +  K  
Sbjct: 83  IGTFHSICARILRMNIEKIGYSNNFTIYDTQDQRTLIRDIIKDL 126


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++      PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 61  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216
                 A  E LE    ++ +T+I +I   R 
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174


>gi|303233897|ref|ZP_07320546.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna
           BVS033A4]
 gi|302494822|gb|EFL54579.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna
           BVS033A4]
          Length = 724

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 42/197 (21%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           ++L +    ++    +      + A AGSGKT +L  ++   L         +L +T T 
Sbjct: 1   MNLDNLNDRQREAVENTDGPMLILAGAGSGKTKVLTTKIAYCLEKGLCSKYEILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  I+                                       E    + 
Sbjct: 61  KAAKEMKERVENILQ--------------------------------------ENVDSMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  I++          +F + D +    L++E  K      +   N E+K   
Sbjct: 83  IGTFHAICSRILRVEIERIGFERNFTVYDRQDQISLVKECLKDM---GVDPKNVEIKNEI 139

Query: 193 YEILEISNDEDIETLIS 209
             I  + N    E  I 
Sbjct: 140 NTISRLKNAGATEKNID 156


>gi|218289369|ref|ZP_03493603.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240475|gb|EED07656.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 757

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 50/235 (21%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S+ +  +++ + E + A+D      V A AGSGKT +L +R++ L+      P  +L +
Sbjct: 7   ASDILKGLNEKQREAVTATD--GPVLVIAGAGSGKTSVLTRRIVYLIAERRVPPWAILAI 64

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  ++   +                                      
Sbjct: 65  TFTNKAAREMEERIERLVGPVA-------------------------------------- 86

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             +   T HA C  I+++       TS F + D      L     +  +  + +D  +  
Sbjct: 87  SDIWTSTFHAMCARILRRDIHHLGYTSAFTVLDAADQVSL----VRRLMQEMNIDVRKFE 142

Query: 189 KKAFYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            +A    +    +E    E  +    S    +    +     + R++ E      
Sbjct: 143 PRAVLHAISQHKNELRSAEKALDLAGSPYDKMVGDVYL---AYERRLRENQALDF 194


>gi|312862860|ref|ZP_07723100.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396]
 gi|311101720|gb|EFQ59923.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396]
          Length = 769

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +  ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLTGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R + +  A S                                      
Sbjct: 59  TFTNKAAREMRERAMALNPATSETL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKTLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ ++ 
Sbjct: 136 ERAILGTISNAKNDLLDE 153


>gi|304436816|ref|ZP_07396782.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370188|gb|EFM23847.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 746

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 52/230 (22%)

Query: 14  IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL+      +Q   +       + A AGSGKT +L  R+  LL     P  +L +T T 
Sbjct: 1   MDLMQGLNEPQQRAVACLQGPLLIVAGAGSGKTRVLTFRIANLLEHGVPPYRILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +I   +                                        + 
Sbjct: 61  KAAREMRERVDALIGDAAQ--------------------------------------DVW 82

Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           + T H+FC   ++ +         +F I D   SK L+ E     L  + +D       A
Sbjct: 83  LSTFHSFCARFLRMELEHYGRYAKNFVIYDAADSKGLLREC----LKELNIDEKHTAPGA 138

Query: 192 FYEILEISNDEDIETLISDIISNRTAL------KLIFFFFSYLWRRKIIE 235
               +  + +  ++  ++   +  T        K+   + S L     ++
Sbjct: 139 VQAHISDAKNRLLD--VAAFTAQATDFFAEQVAKIYALYQSKLQENNALD 186


>gi|329770175|ref|ZP_08261566.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325]
 gi|328837076|gb|EGF86718.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325]
          Length = 1221

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 37/223 (16%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T  +    S       V+A AGSGKT +L +R+ R +         +L LT T AAA  
Sbjct: 18  PTPPQWQAISITGADILVAAAAGSGKTEVLSERIARKVACDRWDIDKMLVLTFTTAAAKN 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   IT      + +L+ E+ +      ++  + K R L+   L       V TI 
Sbjct: 78  MLVRIENKIT------ERLLATELEE------DRLFLRKQRMLMNNAL-------VTTID 118

Query: 138 AFCEAIMQQFPLEAN---------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +FC +++++F              ++ +F++     SK L+ +A    L       ++ +
Sbjct: 119 SFCLSVLKKFYYLVEEKIDGEYKYLSPNFSVLPN--SKNLLVDAINEVLEQ-YAKEDKNI 175

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
             + + IL   N+     ++S II     L  I  F  YL + 
Sbjct: 176 TDSLFTILGDKNN-----IVSSIIDVYYKLLTIPNFEEYLDKD 213


>gi|224533580|ref|ZP_03674169.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a]
 gi|224513253|gb|EEF83615.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a]
          Length = 659

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 870

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++      PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 61  CKEMSDRVMKIVGGEAK--------------------------------------EITIR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216
                 A  E LE    ++ +T+I +I   R 
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174


>gi|78778691|ref|YP_396803.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str. MIT
           9312]
 gi|78712190|gb|ABB49367.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus
           str. MIT 9312]
          Length = 802

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 18/166 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S  K +            V A AGSGKT  L  R+  L+  N   P  +L +T T  AA 
Sbjct: 11  SLNKQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAK 70

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+  ++      +         K   +   ++++ + R            L + T 
Sbjct: 71  EMKARLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHQER---------LQNLWIGTF 121

Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175
           H+    +++ + +E             F+I DE  S+ L++E    
Sbjct: 122 HSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166


>gi|94309177|ref|YP_582387.1| UvrD/REP helicase [Cupriavidus metallidurans CH34]
 gi|93353029|gb|ABF07118.1| putative ATP-dependent DNA helicase [Cupriavidus metallidurans
           CH34]
          Length = 702

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 31/163 (19%)

Query: 16  LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
            +S+   EQ  A   D      + A AGSGKT+ L  RV  L++  A P  +L LT ++ 
Sbjct: 24  YLSRLNPEQRAAVEYDGDAPLLIIAGAGSGKTNTLAHRVAHLVVNGADPRRILLLTFSRR 83

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+EM  RV  I+     +      A +                                
Sbjct: 84  AASEMGRRVERIVDQALGIQTGAGRAALQ-----------------------------WS 114

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA    +++++     +   F I+D   +  L+   +   
Sbjct: 115 GTFHAIGARLLREYAETLGLAPTFTISDRGDAADLMHVVRHDL 157


>gi|146318385|ref|YP_001198097.1| superfamily I DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146320577|ref|YP_001200288.1| superfamily I DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253751530|ref|YP_003024671.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|253753431|ref|YP_003026572.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|253755741|ref|YP_003028881.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|145689191|gb|ABP89697.1| Superfamily I DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145691383|gb|ABP91888.1| Superfamily I DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251815819|emb|CAZ51427.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|251818205|emb|CAZ56006.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251819677|emb|CAR45461.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|319757962|gb|ADV69904.1| superfamily I DNA/RNA helicase [Streptococcus suis JS14]
          Length = 759

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 51/211 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYALNPATQACL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRSLM----KRILKNLNLDPKKWS 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISN 214
           +++    +     ++ +D+  E    D+ + 
Sbjct: 136 ERSILGTISNAKNDLIDDKAFEAQAGDLYTQ 166


>gi|222084834|ref|YP_002543363.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84]
 gi|221722282|gb|ACM25438.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84]
          Length = 689

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   EQ LA +               V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 5   YLEKLNPEQRLAVEHGTTVEGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 64

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T ++ AAAEM  RV  I       +  I++  +                         
Sbjct: 65  LMTFSRRAAAEMGRRVERICREVLGANAGIMADAL------------------------- 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     +++ +  +  +   F I D E S  L+   +   
Sbjct: 100 ----AWTGTFHGIGARLLRDYAEQIGLDPAFTIHDREDSADLMNLIRHDL 145


>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040629|gb|ACT57425.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
          Length = 685

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 44/194 (22%)

Query: 15  DLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
           + +    ++Q  A          + A AG+GKT +L+ R+L L+      PS +L +T T
Sbjct: 25  NYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A  EM +R+   +                                             
Sbjct: 85  NQAIQEMKNRLACYLGEKIP---------------------------------------- 104

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKK 190
           ++QT H+FC +I+++      + + FAI D  +S+ +I++  K   +     D +E ++K
Sbjct: 105 RIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEK 164

Query: 191 AFYEILEISNDEDI 204
             Y      N +DI
Sbjct: 165 IDYWQNRGWNPKDI 178


>gi|83309824|ref|YP_420088.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82944665|dbj|BAE49529.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 864

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 43/186 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +    +       V + AG+GKT +L  R+  +L +N A P   L +T T  AA EM
Sbjct: 140 NPEQFQAVTTTDGPVLVLSGAGTGKTKVLTSRLAHILASNLAQPWQCLAVTFTNRAAREM 199

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   S                                       G+ + T H+
Sbjct: 200 KERVGQLVGPVS--------------------------------------DGIWLGTFHS 221

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I++       +   F + D +   +++++     +A   +D      +     ++ 
Sbjct: 222 LCLRILRSHAEAVGLGGDFTVLDSDDQMRVLKQ----VMAEAHVDPKGTPPQGLMATIQR 277

Query: 199 SNDEDI 204
             D  +
Sbjct: 278 WKDRAV 283


>gi|319947280|ref|ZP_08021513.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
           700641]
 gi|319746522|gb|EFV98782.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
           700641]
          Length = 767

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 46/203 (22%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           N   E +  ++ +++ ++E +  ++      + A AGSGKT +L  R+  L+     +P 
Sbjct: 2   NEEYEMNPLLNGMNERQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPW 59

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  R  ++  A                                   
Sbjct: 60  NILAITFTNKAAREMKERAYQLNPATQDCL------------------------------ 89

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                    + T H+ C  I+++         +F I D  + + L+    K  L  + LD
Sbjct: 90  ---------IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLD 136

Query: 184 NNEELKKAFYEILEISNDEDIET 206
             +  ++     +  + ++ I+ 
Sbjct: 137 PKKWNERTILGTISNAKNDLIDE 159


>gi|312149185|gb|ADQ29256.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi N40]
          Length = 659

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|8928266|sp|Q9S3Q0|PCRA_LEUCI RecName: Full=ATP-dependent DNA helicase pcrA
 gi|5762478|gb|AAD51119.1|AF176554_1 DNA helicase PcrA [Leuconostoc citreum]
          Length = 749

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +            + A AGSGKT +L  R+  L+   N  P  +L +T T  AA EM
Sbjct: 11  NNKQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +++                                      +    + V T HA
Sbjct: 71  RERIAALLSE-------------------------------------DVARDIWVSTFHA 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               I+++      +  +F I D    + L++      
Sbjct: 94  LAVRILRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDL 131


>gi|329116495|ref|ZP_08245212.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD
           2020]
 gi|326906900|gb|EGE53814.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD
           2020]
          Length = 764

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 46/203 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ +++ ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNEKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                                   A  L    ++T 
Sbjct: 59  TFTNKAAREMRDR-----------------------------------ALALNPATIDTL 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L S+ LD  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKSLNLDPKKWS 135

Query: 189 KKAFYEILEISNDEDIETLISDI 211
           +++    +  + ++ ++  I + 
Sbjct: 136 ERSILGTISNAKNDLLDEKIFEA 158


>gi|315126291|ref|YP_004068294.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas sp.
           SM9913]
 gi|315014805|gb|ADT68143.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas sp.
           SM9913]
          Length = 1188

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 14/172 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP---------STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LR LL    P           +L +T T AA  E+  RV   
Sbjct: 16  LIEASAGTGKTYTITGLYLRYLLGMQIPGELSTPLSVEQILVVTFTDAATQEIKDRVRSR 75

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I A        +  +   I+G      D  +A  LL    ++     + TIH FC+ +++
Sbjct: 76  IIAARDALLGQVPND-ELIEGVIAGVDDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134

Query: 146 QFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           Q   E+ +  +   I DE +   ++ E  K    + +   N++   A  E+ 
Sbjct: 135 QHAFESGVAFNLEFILDERE---ILLETIKDFWRAFVYPLNKQKTNAILEVF 183


>gi|284047984|ref|YP_003398323.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
           20731]
 gi|283952205|gb|ADB47008.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
           20731]
          Length = 750

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL++    +Q  A         + A AGSGKT  L  ++  LL     P  +L +T T  
Sbjct: 3   DLLASLNEQQAEAVRQIAGPILILAGAGSGKTKALTTKIAYLLEKGVKPWNILAITFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   +                                        + +
Sbjct: 63  AAKEMRQRVDALVGPSAK--------------------------------------DVWL 84

Query: 134 QTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176
            T H FC  ++++        T+ F+I D    K +++EA K  
Sbjct: 85  YTFHGFCNQLLRRDINALPGYTTSFSIYDPSDCKNVLKEALKKL 128


>gi|163756230|ref|ZP_02163345.1| ATP-dependent DNA helicase II [Kordia algicida OT-1]
 gi|161323842|gb|EDP95176.1| ATP-dependent DNA helicase II [Kordia algicida OT-1]
          Length = 778

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            I+Q    Q   +     +  V A AGSGKT +L  R+  L+        +L LT T  A
Sbjct: 8   YINQLNDAQRAPTLHKDGALMVIAGAGSGKTRVLTYRIAYLMSQGIDAFNILSLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM +R+  I+      +                                     L + 
Sbjct: 68  AREMKNRIANIVGGSEAKN-------------------------------------LWMG 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++    +    S+F I D + S++LI    K  
Sbjct: 91  TFHSIFAKILRFEADKLGYPSNFTIYDTQDSERLIRSIIKEM 132


>gi|307730566|ref|YP_003907790.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307585101|gb|ADN58499.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 812

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 38/174 (21%)

Query: 11  SETIDLISQTKSEQLLASDPTRS--------AWVSANAGSGKTHILVQRVLRLLLANAHP 62
           S+    +++    Q  A D              V A AGSGKT+ L  RV  L++  A P
Sbjct: 42  SDATAWLAKLNDAQRQAVDHGADMRGALPGALLVIAGAGSGKTNTLAHRVANLVVKGADP 101

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L LT ++ AA EM+ RV  I TA                               L  
Sbjct: 102 RRILLLTFSRRAAQEMTRRVTRIATA------------------------------ALGT 131

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 G     T H+    +++++     +   F I D E S  L+   +   
Sbjct: 132 RAALAQGLTWAGTFHSVGARLLREYAELIGLAPAFTINDREDSADLMNLVRHEL 185


>gi|258508010|ref|YP_003170761.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
 gi|257147937|emb|CAR86910.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
 gi|259649338|dbj|BAI41500.1| DNA helicase [Lactobacillus rhamnosus GG]
          Length = 750

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 44/194 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +  ++  ++E +LA++      + A AGSGKT +L  R+  L+   N +P  +L +T T
Sbjct: 6   ALKGMNDKQAEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                       E    +
Sbjct: 64  NKAAREMRERVGKLVDP-------------------------------------EIARDI 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T HA C  I+++   +      F IAD  +   L     K  LA   LD      K+
Sbjct: 87  WVSTFHALCVRILRRDIDKLGYNRAFMIADPAEQLTL----VKHILADFNLDPKRYDPKS 142

Query: 192 FYEILEISNDEDIE 205
               +  + +E I+
Sbjct: 143 ILGAISGAKNELID 156


>gi|221218096|ref|ZP_03589562.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a]
 gi|221192044|gb|EEE18265.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a]
          Length = 659

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175
           AF    +++         +F+I D+     L++E                          
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNIISLLKN 151

Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                + + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|151945237|gb|EDN63486.1| DNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 1174

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%)

Query: 13  TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
            + L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T
Sbjct: 8   LLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ E++        E+L                                
Sbjct: 68  FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+ C  I+ +F    ++   + I DE++   ++++  +  
Sbjct: 96  ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139


>gi|255009003|ref|ZP_05281129.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12]
 gi|313146743|ref|ZP_07808936.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12]
 gi|313135510|gb|EFR52870.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12]
          Length = 1057

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   IVYKASAGSGKTFTLATEYIKLLIQNPRAYRQILAVTFTNKATAEMKERILSQLYGIHIV 64

Query: 93  SDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             +  +     I     ++ ++ K A   L  +L      +V+TI +F +++M+    E 
Sbjct: 65  DPDSDAYLKRIIAETGRSEDEIRKTAGIALSYMLHDYSRFRVETIDSFFQSVMRNLAREL 124

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            ++ +  I  E  + +++ +A  S +  +  +           +L+  N+   + 
Sbjct: 125 ELSPNLNI--ELNNIEVLSDAVDSMIEKLGPN-----SPVLAWLLDYINERIADD 172


>gi|225549593|ref|ZP_03770559.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a]
 gi|225369870|gb|EEG99317.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a]
          Length = 659

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|46199364|ref|YP_005031.1| DNA helicase uvrD [Thermus thermophilus HB27]
 gi|46196989|gb|AAS81404.1| DNA helicase uvrD [Thermus thermophilus HB27]
          Length = 692

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 56/163 (34%), Gaps = 41/163 (25%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L++     Q  A       A V A AGSGKT  +V RV  L+      PS +L +T T  
Sbjct: 5   LLAPLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                          G + V
Sbjct: 65  AAEEMRERLRGLVPGA---------------------------------------GEVWV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA    I++ +     +   F + DE+    L++E  K  
Sbjct: 86  STFHAAALRILRVYGERVGLRPGFVVYDEDDQTALLKEVLKEL 128


>gi|116619175|ref|YP_821331.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
 gi|116222337|gb|ABJ81046.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1088

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           +D  RS  V A+AG+GKT  LV R++ ++ A     T++ +T T AAA  M  RV   + 
Sbjct: 8   ADLERSWVVEASAGTGKTTALVDRMVEVIAAGTPVETIVAVTFTHAAAGNMKLRVRHEL- 66

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                              ++         R  L     +     + TIHAFC  ++++ 
Sbjct: 67  ------------------ERRRAAETDEAIRLRLADAARSLDRAFIGTIHAFCAQLLRRR 108

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           P+EA +   F    +  + ++     +  +   +   +  L +A   +
Sbjct: 109 PVEAQVDPVFQELAQADALRVFGRMFRRWIEGKLARPSPALSRALARM 156


>gi|317050280|ref|YP_004111396.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
 gi|316945364|gb|ADU64840.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
          Length = 643

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 41/170 (24%)

Query: 8   QEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           Q+ S+ I   SQ  ++Q  A +     A + A AGSGKT +L  R++ LL     P  +L
Sbjct: 5   QDISQAI--FSQLNTQQGAAVAHVDGPALILAGAGSGKTRVLTARIMNLLQQGVAPWNIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+   +   +                                    
Sbjct: 63  AVTFTNKAAGEMRQRIRSRLGPVA------------------------------------ 86

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + + T H+    I++         S F I D     K++ +  K  
Sbjct: 87  --SDIWIGTFHSIALRILRIECHHIGYESDFVIYDPADGLKVVTKVLKRL 134


>gi|91069901|gb|ABE10830.1| UvrD/REP helicase [uncultured Prochlorococcus marinus clone
           ASNC2150]
          Length = 802

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 18/166 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S    +            V A AGSGKT  L  R+  L+  N   P  +L +T T  AA 
Sbjct: 11  SLNNQQLQAVKHVYGPLLVIAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAK 70

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+  ++      +         K   +   ++++ + R            L + T 
Sbjct: 71  EMKARLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHQER---------LQNLWIGTF 121

Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175
           H+    +++ + +E             F+I DE  S+ L++E    
Sbjct: 122 HSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166


>gi|228477389|ref|ZP_04062025.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126]
 gi|228250824|gb|EEK10012.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126]
          Length = 769

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +  ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLTGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R + +  A S                                      
Sbjct: 59  TFTNKAAREMRERAMALNPATSETL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ ++ 
Sbjct: 136 ERAILGTISNAKNDLLDE 153


>gi|218249903|ref|YP_002375114.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7]
 gi|226321913|ref|ZP_03797439.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26]
 gi|218165091|gb|ACK75152.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7]
 gi|226233102|gb|EEH31855.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26]
          Length = 659

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|15594952|ref|NP_212741.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia
           burgdorferi B31]
 gi|223889056|ref|ZP_03623646.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b]
 gi|2688535|gb|AAC66967.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia
           burgdorferi B31]
 gi|223885482|gb|EEF56582.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b]
          Length = 659

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|225870395|ref|YP_002746342.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699799|emb|CAW93615.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi
           4047]
          Length = 763

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +D ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLDGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMRER----------------------ALALSPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L++   K    ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVK----ALNLDPKKWS 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ ++ 
Sbjct: 136 ERSILATISNAKNDLLDE 153


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++      PS +LC+T T  A
Sbjct: 7   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 67  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 88

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 89  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLNYYYATSNLMATNMQIQKVID 148

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216
                 A  E LE    ++ +T+I +I   R 
Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 180


>gi|225548716|ref|ZP_03769763.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a]
 gi|225370746|gb|EEH00182.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a]
          Length = 659

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|148654325|ref|YP_001274530.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148566435|gb|ABQ88580.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
          Length = 751

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 42/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L +   ++Q   +       V A  GSGKT +L  RV  L+ +    P T+L +T T  A
Sbjct: 8   LSALNPAQQQAVTVDPGPVLVLAGPGSGKTRVLTHRVAYLIGVQGVDPHTILAVTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R++ +I A                                          L V 
Sbjct: 68  AREMRDRLVALIGAGQS-------------------------------------AALTVG 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C   +++  +       FAI D +   +++    K  L  + LD  +   +A + 
Sbjct: 91  TFHSICARFLRRDIVHLGRERDFAIYDTDDQLRVM----KRVLRDLNLDEKKHPPRAIHA 146

Query: 195 ILEISNDE 202
            +  + +E
Sbjct: 147 AISRAKNE 154


>gi|124005926|ref|ZP_01690764.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC
           23134]
 gi|123988609|gb|EAY28250.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC
           23134]
          Length = 949

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           S++AGSGKT+ L +  L+L L    P     +L +T T  AA EM  R++  +  ++   
Sbjct: 7   SSSAGSGKTYTLTREYLKLALQGDQPHYFKYILAITFTNDAANEMKARIVNALQGFAQPD 66

Query: 94  ---------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                     + L   I +  G  P K   ++A+ + + I+       V TI  F   I 
Sbjct: 67  TLDDKARKGSDQLLFGIAEELGVAPEKL-RTRAQKVFVKIIYNYSDFAVSTIDRFVNKIT 125

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED- 203
             F  E +I  ++ +  +  + KL+E A    LA +  +  E L     +  E   +E  
Sbjct: 126 TAFTQELDIPYNYDV--DLDTDKLLETAIDRVLAKVGRETKENLSNILVDWAEKKAEEGK 183

Query: 204 --------IETLISDIISNRT 216
                   +     D+++ R+
Sbjct: 184 NWAQIAPELADFSKDLMNERS 204


>gi|322389226|ref|ZP_08062787.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
           903]
 gi|321144131|gb|EFX39548.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
           903]
          Length = 767

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 46/203 (22%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           N   E +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P 
Sbjct: 2   NEEYEMNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPW 59

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  R  ++  A                                   
Sbjct: 60  NILAITFTNKAAREMKERAYQLNPATQDCL------------------------------ 89

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                    + T H+ C  I+++         +F I D  + + L+    K  L S+ LD
Sbjct: 90  ---------IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKSLNLD 136

Query: 184 NNEELKKAFYEILEISNDEDIET 206
             +  ++     +  + ++ I+ 
Sbjct: 137 PKKWNERTILGTISNAKNDLIDE 159


>gi|253583576|ref|ZP_04860774.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725]
 gi|251834148|gb|EES62711.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725]
          Length = 725

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 39/159 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++  A     +  + A AGSGKT  +  R+  ++      P  +L +T T  AA EM
Sbjct: 8   NDRQRKAAEKIEGALLILAGAGSGKTRTITYRIAHMIQELGISPYKILAVTFTNKAAKEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++                                       E      V T H+
Sbjct: 68  KERVEDLVG--------------------------------------EDGRRTMVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           F   +++ +       ++F I D +  K++++   K  +
Sbjct: 90  FGVRLLRTYGDRLGYGANFTIYDADDQKRVVKGIMKELV 128


>gi|254468181|ref|ZP_05081587.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13]
 gi|207086991|gb|EDZ64274.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13]
          Length = 715

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           +D +     +Q  A      SA + A AGSGKT +L  R+  L+      P+ +L +T T
Sbjct: 3   LDYLKDLNEKQSEAVQLQNESALILAGAGSGKTKVLTSRISWLIHNQIVSPNGILAVTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                                         P G+
Sbjct: 63  NKAANEMLSRISLQLGM--------------------------------------NPRGM 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            V T H  C   ++    EA++   F I D       I+   K
Sbjct: 85  WVGTFHGLCNRFLRLHYKEASLPQTFQILDSSDQLSAIKRLCK 127


>gi|167957596|ref|ZP_02544670.1| ATP-dependent DNA helicase PcrA [candidate division TM7 single-cell
           isolate TM7c]
          Length = 702

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 35/155 (22%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
           +Q           + A AGSGKT  L  R+  ++    A PS +L +T T  AA EM  R
Sbjct: 9   QQKAVETTEGPLLILAGAGSGKTKTLTHRIAYIISRGLAWPSQILAVTFTNKAAREMRER 68

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  ++       + +                                    + T H  C 
Sbjct: 69  LGSMLNQDYTQRNFMP----------------------------------WMGTFHGICV 94

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            I++      NI S+F I DE   K ++++A KS 
Sbjct: 95  KILRIEGGIINIPSNFVIYDESDKKGVVKQAMKSL 129


>gi|188591039|ref|YP_001795639.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
 gi|170937933|emb|CAP62917.1| putative ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG
           19424]
          Length = 702

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 31/163 (19%)

Query: 16  LISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
            +S+   EQ  A +        + A AGSGKT+ L  RV  L+L  A P  +L LT ++ 
Sbjct: 25  YLSRLNPEQRAAVEHGSEAPLLIIAGAGSGKTNTLAHRVAHLVLGGADPRRILLLTFSRR 84

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV  I+      S     A +                                
Sbjct: 85  AAAEMGRRVERIVDQALGTSTGAGRAALQ-----------------------------WS 115

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA    +++++     ++  F I+D   S  L+   +   
Sbjct: 116 GTFHAIGARLLREYAETLGLSPAFTISDRGDSADLMHVVRHDL 158


>gi|71894555|ref|YP_278663.1| ATP-dependent helicase [Mycoplasma synoviae 53]
          Length = 726

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 38/160 (23%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++     +Q  A +   S   + A AG+GKT +L +++L L+L     PS +L +T T  
Sbjct: 1   MLDDLNEKQREAVEYFDSHLRIIAGAGTGKTKVLTRKILYLILEKKVDPSKILAVTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+                           N     K + L            V
Sbjct: 61  AAKEMKDRI---------------------------NSKYYDKQKVLFE---------NV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            T+H+FC  +++++      + +F I DE   K+++++  
Sbjct: 85  FTLHSFCAQVLRKYINLIGFSRNFPILDELDKKQVLQDLY 124


>gi|157412666|ref|YP_001483532.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215]
 gi|157387241|gb|ABV49946.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215]
          Length = 802

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 22/168 (13%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S    +            V A AGSGKT  L  R+  L+  N   P  +L +T T  AA 
Sbjct: 11  SLNNQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIENNSIDPYNILAVTFTNKAAK 70

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQ 134
           EM  R+           + +L+ E+   Q  +P  +     ++ L T +  E    L + 
Sbjct: 71  EMKARL-----------EVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVYQERLQNLWIG 119

Query: 135 TIHAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175
           T H+    +++ + +E             F+I DE  S+ L++E    
Sbjct: 120 TFHSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166


>gi|224539625|ref|ZP_03680164.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518716|gb|EEF87821.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 916

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 12/210 (5%)

Query: 34  AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW--- 89
               A+AGSGKT  L V+ +  L+L       +L +T T  A AEM  R+L+ +      
Sbjct: 4   LVYKASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIWLS 63

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              S+  L+     ++ K  + SD+ +A    L  +L      +V+TI +F +++M+   
Sbjct: 64  DPASEPYLNRIREDLRQKNLSDSDIRRAAGTALQYMLHDYSRFRVETIDSFFQSVMRNLA 123

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            E  ++ +  I  E  +  ++ +A  S +  +              +L+  N+   +   
Sbjct: 124 RELELSPNLNI--ELNNADVLSDAVDSLIEKL-----TPSSPVLAWLLDYINERIADDKR 176

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            ++           F   Y+ R + + + L
Sbjct: 177 WNVSDEIKRFGWNIFDEGYIERGEGLRQQL 206


>gi|55981396|ref|YP_144693.1| UvrD protein [Thermus thermophilus HB8]
 gi|55772809|dbj|BAD71250.1| UvrD protein [Thermus thermophilus HB8]
          Length = 692

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 56/163 (34%), Gaps = 41/163 (25%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L++     Q  A       A V A AGSGKT  +V RV  L+      PS +L +T T  
Sbjct: 5   LLAPLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  ++                                          G + V
Sbjct: 65  AAEEMRERLRGLVPGA---------------------------------------GEVWV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA    I++ +     +   F + DE+    L++E  K  
Sbjct: 86  STFHAAALRILRVYGERVGLRPGFVVYDEDDQTALLKEVLKEL 128


>gi|312148323|gb|ADQ30982.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi JD1]
          Length = 659

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|225868652|ref|YP_002744600.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701928|emb|CAW99448.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 763

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +D ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLDGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMRER----------------------ALALSPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L++   K    ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVK----ALNLDPKKWS 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ ++ 
Sbjct: 136 ERSILATISNAKNDLLDE 153


>gi|207344042|gb|EDZ71311.1| YJL092Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 987

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%)

Query: 13  TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
            + L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T
Sbjct: 8   WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ E++        E+L                                
Sbjct: 68  FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+ C  I+ +F    ++   + I DE++   ++++  +  
Sbjct: 96  ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139


>gi|167752257|ref|ZP_02424384.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216]
 gi|167660498|gb|EDS04628.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216]
          Length = 813

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 39/166 (23%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           S+ +  ++Q + + ++  D    + + A AGSGKT +L  R+  ++     P  +L LT 
Sbjct: 3   SQILKGLNQAQRDAVVNYD--SPSLIIAGAGSGKTRVLTSRIAYMIEQGVAPYNILALTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA +M  R+ +++    H                                       
Sbjct: 61  TNKAAEQMRERIAQMLPDGRHR-------------------------------------Y 83

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           +++ T H+    I++           F I +    K L++   K  
Sbjct: 84  IRMGTFHSVFSRILRDNAERIGFPQSFTIYEPSDCKNLLKTIVKEL 129


>gi|302380742|ref|ZP_07269207.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311685|gb|EFK93701.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna
           ACS-171-V-Col3]
          Length = 724

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 42/197 (21%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           ++L +    ++    +      + A AGSGKT +L  ++   L         +L +T T 
Sbjct: 1   MNLDNLNDRQREAVENTDGPMLILAGAGSGKTKVLTTKIAYCLEKGLCSKYEILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  I+                                       E    + 
Sbjct: 61  KAAKEMKERVENILQ--------------------------------------ENVDSMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  I++          +F + D      L++E  K      +   N E+K   
Sbjct: 83  IGTFHAICSRILRVEIERIGFERNFTVYDRADQISLVKECLKDM---GVDPKNVEIKNEI 139

Query: 193 YEILEISNDEDIETLIS 209
             I  + N    E  I 
Sbjct: 140 NTISRLKNAGATEKNID 156


>gi|300813299|ref|ZP_07093654.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512570|gb|EFK39715.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 720

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ID ++  + E LL ++      + A AGSGKT ++  ++  L+        +L +T T  
Sbjct: 3   IDSLNDKQKEALLYNE--GPLLILAGAGSGKTKVVTSKIAYLIENEVPSWRILAITFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  +I                                       E    + +
Sbjct: 61  AAREMRERVAMLID--------------------------------------EDVSPMWI 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA C  I+++        S++ I D      +I+E+ K  
Sbjct: 83  GTFHAICVRILRKNIENLGYGSNYNIYDRADQNTIIKESYKEL 125


>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 876

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++      PS +LC+T T  A
Sbjct: 7   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 67  CKEMSDRVMKIVGGEAK--------------------------------------EITIR 88

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 89  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 148

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216
                 A  E LE    ++ +T+I +I   R 
Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 180


>gi|322387882|ref|ZP_08061489.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
           700779]
 gi|321141155|gb|EFX36653.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
           700779]
          Length = 762

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ I+ 
Sbjct: 136 ERSILGTISNAKNDLIDD 153


>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 876

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +R+  ++      PS +LC+T T  A
Sbjct: 7   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERITSIIKNGNSKPSEILCITFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 67  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 88

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 89  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 148

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216
                 A  E LE    ++ +T+I +I   R 
Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 180


>gi|331004225|ref|ZP_08327704.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411498|gb|EGG90909.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 735

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 41/167 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S   D ++  + +            + A AGSGKT +L+ R+  L+   +  P  ++ +
Sbjct: 1   MSGIYDKLNDKQKQ--AVFTTEGPVLLLAGAGSGKTGVLMHRIAYLIEEKHIDPYNIMAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+ ++I    +                                     
Sbjct: 59  TFTNKAAKEMKERIGKLIGEEGNF------------------------------------ 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + V T H+ C   +++F       + F I D +  + L+++  K 
Sbjct: 83  --VWVMTFHSSCVRFLRRFIDRIGFDNSFTIYDSDDQRTLMKKIFKE 127


>gi|188995178|ref|YP_001929430.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188594858|dbj|BAG33833.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 765

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D +S     Q  A       A V A AGSGKT +LV ++L L+ +   P+ L+ LT T  
Sbjct: 4   DYLSSLNDSQKAAVLYNDGPALVIAGAGSGKTRVLVYKLLHLIRSGYDPARLMALTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV   I                                        T   +++
Sbjct: 64  AAKEMKERVASEIGP--------------------------------------TAYRIQM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+++  +    T  F+I D   +K L+    K  
Sbjct: 86  GTFHSVFSRILRENAIHLGYTRDFSIYDTNDTKSLLRHVMKRM 128


>gi|19746195|ref|NP_607331.1| DNA helicase II [Streptococcus pyogenes MGAS8232]
 gi|19748377|gb|AAL97830.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS8232]
          Length = 772

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + +D  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++    +     ++ +++  E   +D+ S   A +    +   L R + ++
Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186


>gi|294085888|ref|YP_003552648.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665463|gb|ADE40564.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 743

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 69/201 (34%), Gaps = 43/201 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           N   ++  +  L     S+    +       V + AG+GKT +L  R+  L+ +  A P 
Sbjct: 3   NDLNQNPVSPWLAGLNTSQSDAVTSLQGPLLVLSGAGTGKTRVLTSRLAELVASGTAKPW 62

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  R+ +++                                     
Sbjct: 63  NILAVTFTNKAAREMKSRIGDMVGPMVE-------------------------------- 90

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                  + + T H+    ++++      + S F I D +   +L+++     +A+  +D
Sbjct: 91  ------QVWLGTFHSLAAKMLRRHADLVGLKSDFTILDSDDQVRLVKQ----LMAAENID 140

Query: 184 NNEELKKAFYEILEISNDEDI 204
                 +    ++    D  +
Sbjct: 141 PKRWPARMVAGVISRWKDRGL 161


>gi|94994523|ref|YP_602621.1| DNA helicase II [Streptococcus pyogenes MGAS10750]
 gi|94548031|gb|ABF38077.1| DNA helicase II [Streptococcus pyogenes MGAS10750]
          Length = 772

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 52/232 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R L +                       P   D               
Sbjct: 59  TFTNKAAREMKERALSL----------------------NPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + +D  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++    +     ++ +++  E   +D+ S   A +    +   L R + ++
Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186


>gi|282882802|ref|ZP_06291407.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B]
 gi|281297213|gb|EFA89704.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B]
          Length = 720

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 40/163 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ID ++  + E LL ++      + A AGSGKT ++  ++  L+        +L +T T  
Sbjct: 3   IDSLNDKQKEALLYNE--GPLLILAGAGSGKTKVVTSKIAYLIENEVPSWRILAITFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  +I                                       E    + +
Sbjct: 61  AAREMRERVAMLID--------------------------------------EDVSPMWI 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA C  I+++        S++ I D      +I+E+ K  
Sbjct: 83  GTFHAICVRILRKNIENLGYGSNYNIYDRADQNTIIKESYKEL 125


>gi|224372404|ref|YP_002606776.1| putative recombination protein RecB [Nautilia profundicola AmH]
 gi|223588940|gb|ACM92676.1| helicase [Nautilia profundicola AmH]
          Length = 878

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 30/206 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R L LL    +PS++L +T T  AA EM  RV++ +       + 
Sbjct: 7   LKASAGSGKTFSLALRYLALLFRGVNPSSILAVTFTNKAANEMKERVIKFLDLLKEDEEL 66

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +     T    +   K  + K   +L   L     + + TI AF + ++++F     +  
Sbjct: 67  LEILCGTSGLNE---KEILKKREFVLKEFL--TSDIHITTIDAFIQKVLRKFGYYVGVDV 121

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
            F I  +                         L+  F  ++E  ++++  +LI       
Sbjct: 122 DFDIKSDN------------------------LENIFELLIESLDNKEFNSLIEFAKIEN 157

Query: 216 TALKLIFFFFSYLWRRKIIEKSLWSI 241
              K I   F  L+  K  E S W +
Sbjct: 158 KKSKSIVELFEMLY-EKEKELSKWKM 182


>gi|170016834|ref|YP_001727753.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20]
 gi|169803691|gb|ACA82309.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20]
          Length = 749

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +            + A AGSGKT +L  R+  L+   N  P  +L +T T  AA EM
Sbjct: 11  NNKQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +++                                      +    + V T HA
Sbjct: 71  RERIAALLSE-------------------------------------DVARDIWVSTFHA 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               I+++      +  +F I D    + L++      
Sbjct: 94  LAVRILRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDL 131


>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
 gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
           13]
          Length = 870

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++      PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 61  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++K   
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216
                 A  E LE    ++ +T+I +I   R 
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174


>gi|323697750|ref|ZP_08109662.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323457682|gb|EGB13547.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 718

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 43/213 (20%)

Query: 13  TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +ID  ++    Q  A +       V A AGSGKT  +V R+  L+     P+ +L LT T
Sbjct: 2   SIDFENELNDAQREAVTTTEGPVLVIAGAGSGKTRTIVYRLANLVQKGVDPAQILLLTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM                                   +++A  +L   L    G 
Sbjct: 62  RKAAQEM-----------------------------------LARAETILGRPLHGTSG- 85

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              T H+F  A +++   +      F + D   S+ + +E +      +   +    KKA
Sbjct: 86  --GTFHSFAYATLRRNAADIGFAGGFTLMDRADSENVCKEVRDEL--KLGKGDRSYPKKA 141

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFF 224
              +L++      + L  + +  R A  L  + 
Sbjct: 142 --TLLDMITKSRNKELTIEAVMEREAYHLSPYL 172


>gi|301163214|emb|CBW22764.1| putative helicase [Bacteroides fragilis 638R]
          Length = 1057

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D    A + +I  +  +  D  +  A   L  +L      +V+TI +F ++IM+    E
Sbjct: 64  GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSIMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
             ++ +  I  E  + +++ +A  S +  +    N  +     + ++    +D    +SD
Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179

Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240
            I +  R      +       RR++ + ++  
Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211


>gi|315222686|ref|ZP_07864575.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211]
 gi|315188372|gb|EFU22098.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211]
          Length = 777

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 46/207 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           ++ +  +  ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L
Sbjct: 16  KKMNPLLTGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNIL 73

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R   +  A                                      
Sbjct: 74  AITFTNKAAREMKERAYTLNPATEDCL--------------------------------- 100

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +
Sbjct: 101 ------IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKTLNLDPKK 150

Query: 187 ELKKAFYEILEISNDEDIETLISDIIS 213
             ++A    +  + ++ I+ +    ++
Sbjct: 151 WNERAILGTISNAKNDLIDEVAYAALA 177


>gi|254446951|ref|ZP_05060418.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium
           HTCC5015]
 gi|198263090|gb|EDY87368.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium
           HTCC5015]
          Length = 1215

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 20/176 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-------------PSTLLCLTHTKAAAAEMSHR 81
            + A+AG+GKT  L    LRL+L +               P  +L +T T+AA  E+  R
Sbjct: 10  LIEASAGTGKTFTLAGLYLRLVLGHGDSLQSADGHAQALRPQDILVMTFTEAATQELRER 69

Query: 82  VLEIIT----AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           + E +     A+S    + L   +T +    P++   S+  HLL    +      + TIH
Sbjct: 70  IRERLAEAAEAFSGRLKDKLDPLLTTLLNDYPDEQH-SRCAHLLNAAAQDMDEAAITTIH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            FC+ ++++   ++   S F ++ +E  K L +++      S  L    +  K F 
Sbjct: 129 GFCQRMLREHAFDSR--SLFNLSLQEDEKTLTDDSFLDYWRSFALPLEGDAFKEFE 182


>gi|50914312|ref|YP_060284.1| DNA helicase II [Streptococcus pyogenes MGAS10394]
 gi|94990600|ref|YP_598700.1| DNA helicase II [Streptococcus pyogenes MGAS10270]
 gi|50903386|gb|AAT87101.1| DNA helicase II [Streptococcus pyogenes MGAS10394]
 gi|94544108|gb|ABF34156.1| DNA helicase II [Streptococcus pyogenes MGAS10270]
          Length = 772

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + +D  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++    +     ++ +++  E   +D+ S   A +    +   L R + ++
Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186


>gi|306827259|ref|ZP_07460546.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782]
 gi|304430406|gb|EFM33428.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782]
          Length = 772

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 52/232 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R L +                       P   D               
Sbjct: 59  TFTNKAAREMKERALSL----------------------NPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + +D  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++    +     ++ +++  E   +D+ S   A +    +   L R + ++
Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186


>gi|257463715|ref|ZP_05628104.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
 gi|317061259|ref|ZP_07925744.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
 gi|313686935|gb|EFS23770.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
          Length = 717

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 45/193 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ +++ + E   A+       + A AGSGKT  +  R+  ++         +L +T T
Sbjct: 3   LLERLNEKQRE--AAATIEGPLLILAGAGSGKTRTITYRIAHMIEELGIPAYLILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV+ +I   +                                         
Sbjct: 61  NKAAKEMKERVISLIGEEAE--------------------------------------RA 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+F   +++ +  +    ++F I D E  K++I    K+ +  + L N +  +K 
Sbjct: 83  TISTFHSFGVRLLRIYGNKLGYQANFTIYDVEDQKRII----KAIMKELNLQNTDLSEKK 138

Query: 192 FYEILEISNDEDI 204
              ++    +E I
Sbjct: 139 LASLISKLKEEGI 151


>gi|315613237|ref|ZP_07888147.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC
           49296]
 gi|315314799|gb|EFU62841.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC
           49296]
          Length = 763

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      V A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLVMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|160914774|ref|ZP_02076988.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991]
 gi|158433314|gb|EDP11603.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991]
          Length = 1080

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 81/204 (39%), Gaps = 31/204 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +      ++       ++  VSA+AGSGKT +L+ R++ L++  +     +  +T T+AA
Sbjct: 12  MPKWNAQQKKAIETKQKNILVSASAGSGKTTVLIARLMDLVMKDHISIDEICAMTFTEAA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +      +  +                     +  +   L       + 
Sbjct: 72  ANEMKKRLASELQKAYAAAQSMEE-------------------KAFITKQLTNLQTAHIS 112

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL--IEEAKKSTLASIMLDNNEELKKAF 192
           TIH+FC +I+Q++     ++    IA+   +  +   ++A    ++       E+    F
Sbjct: 113 TIHSFCLSIIQKYYYIIGLSKK-RIANIMDNAAMTHYQDAA---MSQAFQRQYEQQDPIF 168

Query: 193 YEI-----LEISNDEDIETLISDI 211
            E+         ND+ ++  I+ +
Sbjct: 169 LELCMMFSSRPENDDMLQKTIAKL 192


>gi|187939873|gb|ACD39011.1| helicase-related protein [Pseudomonas aeruginosa]
          Length = 1126

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 45/214 (21%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           QE S     I   + ++  A+    +  + A  G+GKT  LV RV  LL     P  +L 
Sbjct: 186 QEPSALEAEIPLNEEQRQAAAHRGNAFLLQAGPGTGKTRTLVARVENLLDEGVDPRRILL 245

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT +  A+AEM+ R+                                ++ R L    L  
Sbjct: 246 LTFSNRASAEMAERI--------------------------------ARKRPLEAAAL-- 271

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE-EAKKSTLASI--MLDN 184
                + T H F   ++++F   A++ +   + D  ++ +L+E E  +  L     + D 
Sbjct: 272 ----WIGTFHRFGLDLLRRFHDLADLPADPRLMDRTEAVELLEYEFSRLGLEHYRDLYDP 327

Query: 185 NEELKKAFYEILEISND----EDIETLISDIISN 214
           ++ +      I    ++         L   ++ +
Sbjct: 328 SQNISDILSAISRAKDEVVDARRYRELAQQMLDD 361


>gi|237738470|ref|ZP_04568951.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC
           9817]
 gi|229420350|gb|EEO35397.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC
           9817]
          Length = 1017

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 12/196 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   + A+AG+GKT+ L    +  L+       +L +T TK A AE+  R+L+ +    
Sbjct: 2   GKKLILKASAGTGKTYRLSLEYIASLMVGIDFKDILVMTFTKKATAEIKERILKFLKEIC 61

Query: 91  HLSDEILSAEITKIQGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-P 148
              ++ +  E           S ++SK + +   I+E    LK+ TI +F   I ++   
Sbjct: 62  ESEEKRVEIEKNLQNIYGDVFSFEISKVKKIYKNIVENKDKLKIYTIDSFTNTIFKKAIA 121

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET-- 206
               I   + I DEE+++K++    +          N E    F   LE ++++D++   
Sbjct: 122 PYLKI-YSYEIVDEEENRKILIRTFEKLFE------NREDFNLFKSFLEDNSEKDMDRYV 174

Query: 207 -LISDIISNRTALKLI 221
            LI +II+ R  + L+
Sbjct: 175 ELIRNIINQRWKMILL 190


>gi|104773602|ref|YP_618582.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422683|emb|CAI97296.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 753

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            SE   L      +            V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R ++++                                       +  
Sbjct: 61  TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++          F+IAD  +   L++   +  
Sbjct: 83  ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130


>gi|92118249|ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91801143|gb|ABE63518.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis
           X14]
          Length = 833

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            ++    EQ  A +       V A AG+GKT +L  R+  +L    A P  +L +T T  
Sbjct: 34  YLAGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPGEILSVTFTNK 93

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM HR+ +++                                          G   +
Sbjct: 94  AAREMKHRLGQMLGHAVE-------------------------------------GMPWL 116

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++      ++ S+F + D +   +L+++     L +  +D+     +   
Sbjct: 117 GTFHSIGGRILRVHAELVHLKSNFTVLDVDDQIRLLKQ----LLQADNIDDKRWPARMLA 172

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 173 GLIDGWKNRGL 183


>gi|313159744|gb|EFR59101.1| putative ATP-dependent helicase PcrA [Alistipes sp. HGB5]
          Length = 858

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 39/169 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
            + S  +  ++   +++    +    + + A AGSGKT +L  R+  ++     P  +L 
Sbjct: 16  SKESPILQGLN--PAQRAAVVNYDAPSLIIAGAGSGKTRVLTSRIAYMIEQGVAPFNILA 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  AA +M  R+ ++I                                         
Sbjct: 74  LTFTNKAAEQMRERIAQMIPD-------------------------------------NR 96

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              +++ T H+    I+++          F I +    K L++   +  
Sbjct: 97  SRYIRMGTFHSVFSRILRENADRIGFPDSFTIYEPSDCKNLLKTIVREL 145


>gi|316933213|ref|YP_004108195.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315600927|gb|ADU43462.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 863

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L    A P+ +L +T T  
Sbjct: 34  YLSGLNPEQRDAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +++                                          G   +
Sbjct: 94  AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       +TS+F + D +   +L+++     LA+  +D+     +   
Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 173 GLIDGWKNRGL 183


>gi|251782494|ref|YP_002996796.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391123|dbj|BAH81582.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|323127381|gb|ADX24678.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 772

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + +D  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++    +     ++ +++  E   +D+ S   A +    +   L R + ++
Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186


>gi|323347961|gb|EGA82220.1| Srs2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1174

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%)

Query: 13  TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
            + L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T
Sbjct: 8   WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ E++        E+L                                
Sbjct: 68  FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+ C  I+ +F    ++   + I DE++   ++++  +  
Sbjct: 96  ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139


>gi|71903614|ref|YP_280417.1| DNA helicase II [Streptococcus pyogenes MGAS6180]
 gi|139473666|ref|YP_001128382.1| DNA helicase II [Streptococcus pyogenes str. Manfredo]
 gi|71802709|gb|AAX72062.1| DNA helicase II [Streptococcus pyogenes MGAS6180]
 gi|134271913|emb|CAM30151.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str.
           Manfredo]
          Length = 772

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 52/232 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R L +                       P   D               
Sbjct: 59  TFTNKAAREMKERALSL----------------------NPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + +D  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++    +     ++ +++  E   +D+ S   A +    +   L R + ++
Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186


>gi|269120962|ref|YP_003309139.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
 gi|268614840|gb|ACZ09208.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
          Length = 724

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++  K ++  A        + A AGSGKT  +  R+  ++      P  +L LT T
Sbjct: 3   ILDGLN--KEQREAAEHIDGPVLILAGAGSGKTRTVTYRIAHMVREKGVSPLNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R   ++                                            L
Sbjct: 61  NKAAKEMKERAEALVG--------------------------------------NDIHNL 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           ++ T H+F   +++ +  +     +F I D +  K LI +  K  
Sbjct: 83  QISTFHSFSVRLLRIYGEKLGYGKNFNIYDTDDQKSLISKIMKEL 127


>gi|15675225|ref|NP_269399.1| DNA helicase II [Streptococcus pyogenes M1 GAS]
 gi|21910437|ref|NP_664705.1| DNA helicase II [Streptococcus pyogenes MGAS315]
 gi|28896013|ref|NP_802363.1| DNA helicase II [Streptococcus pyogenes SSI-1]
 gi|71910790|ref|YP_282340.1| DNA helicase II [Streptococcus pyogenes MGAS5005]
 gi|94988710|ref|YP_596811.1| DNA helicase II [Streptococcus pyogenes MGAS9429]
 gi|94992533|ref|YP_600632.1| DNA helicase II [Streptococcus pyogenes MGAS2096]
 gi|13622394|gb|AAK34120.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS]
 gi|21904635|gb|AAM79508.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811263|dbj|BAC64196.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1]
 gi|71853572|gb|AAZ51595.1| DNA helicase II [Streptococcus pyogenes MGAS5005]
 gi|94542218|gb|ABF32267.1| DNA helicase II [Streptococcus pyogenes MGAS9429]
 gi|94546041|gb|ABF36088.1| DNA helicase II [Streptococcus pyogenes MGAS2096]
          Length = 772

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + +D  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++    +     ++ +++  E   +D+ S   A +    +   L R + ++
Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186


>gi|293365526|ref|ZP_06612235.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
 gi|291315894|gb|EFE56338.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
          Length = 763

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ I+ 
Sbjct: 136 ERSILGTISNAKNDLIDD 153


>gi|119472177|ref|ZP_01614379.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Alteromonadales bacterium
           TW-7]
 gi|119445096|gb|EAW26390.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Alteromonadales bacterium
           TW-7]
          Length = 1188

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 14/172 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP---------STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LR LL    P           +L +T T AA  E+  RV   
Sbjct: 16  LIEASAGTGKTYTITGLYLRYLLGMQIPGELNAPLSVEQILVVTFTDAATQEIKDRVRNR 75

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I A           +   I+G      D  +A  LL    ++     + TIH FC+ +++
Sbjct: 76  IIAARDALLGQTPND-ELIEGVIAAIGDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134

Query: 146 QFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           Q   E+ +  +   I DE     ++ E  K    S +   +E+   A  ++ 
Sbjct: 135 QHAFESGVAFNLEFILDERD---ILLETIKDFWRSFVYPLSEDRTGAILDVF 183


>gi|116073017|ref|ZP_01470279.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916]
 gi|116068322|gb|EAU74074.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916]
          Length = 1222

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 8/151 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            + A+AG+GKT  L   VLRLL    +P     LL +T T+AAAAE+  R+   +     
Sbjct: 19  LLEASAGTGKTFALAHLVLRLLSEGPNPLQVEQLLVVTFTEAAAAELRDRIARRLQQALA 78

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHL---LITILETPGGLKVQTIHAFCEAIMQQFP 148
           L     +  + +   +       +  R +   L+  LE      + TIH FC   +Q+  
Sbjct: 79  LLQGADADAMDRPLQEWITAQSQTLHRTMEGRLLLALERLDRADITTIHGFCRRTLQRQA 138

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           LEA +    A++ E Q     E+        
Sbjct: 139 LEAGLGP--AVSLESQGHDRREQLVHDYWQQ 167


>gi|242045726|ref|XP_002460734.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor]
 gi|241924111|gb|EER97255.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor]
          Length = 1185

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 38/167 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +++ E +  ++  + E    +D      + A  GSGKT  +V RVL LL     PS +L 
Sbjct: 298 KKYYEYLHSLNDRQKEA-ACNDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGIPPSNILA 356

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T AAA+EM  R+  ++                                         
Sbjct: 357 MTFTTAAASEMRERIGTVVGKAVAKE---------------------------------- 382

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
              + + T H+FC  + +    +   TS F I    Q ++ + EA++
Sbjct: 383 ---IAISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAVIEAER 426


>gi|322379132|ref|ZP_08053529.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
 gi|322380437|ref|ZP_08054639.1| ATP-dependent helicase [Helicobacter suis HS5]
 gi|321147148|gb|EFX41846.1| ATP-dependent helicase [Helicobacter suis HS5]
 gi|321148428|gb|EFX42931.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
          Length = 900

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + LL   A P+T+L LT T  AA+EM  R+   + +    S
Sbjct: 11  LALKASAGSGKTFALTLRYIALLFEGAKPNTILTLTFTNKAASEMRERIYNTLASLHTES 70

Query: 94  D--EILSAEITKIQGKKPNKSDMSKARHLLITILE----------TPGGLKVQTIHAFCE 141
                    I      +     + K  +L  + +                 +QTI AF +
Sbjct: 71  QIWARNKKYIPSDSKIQAILESLQKNYNLSWSQIAPKSEDVYTQFLKADPAIQTIDAFFQ 130

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKL 168
            ++++F     + S F +++  +  KL
Sbjct: 131 KVLRKFSYFVGVRSEFQVSNVSKEDKL 157


>gi|296393904|ref|YP_003658788.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296181051|gb|ADG97957.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 789

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 40/159 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +            + A AGSGKT ++ +RV  LL    A P  +L +T T  AA E+
Sbjct: 12  NPQQAEAVVHLGAPLCIIAGAGSGKTSVITRRVAWLLAEGHARPGEILAITFTNKAAGEL 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                            + V T H+
Sbjct: 72  KERVGALVGG--------------------------------------RMWEMWVSTFHS 93

Query: 139 FCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKST 176
            C  +++     +A    +F I D + SK+L+    +  
Sbjct: 94  SCARLLRAEAGPQAGFDQNFTIYDADDSKRLLAMVAEEL 132


>gi|67624459|ref|XP_668512.1| helicase  [Cryptosporidium hominis TU502]
 gi|54659721|gb|EAL38286.1| helicase-like protein nhl [Cryptosporidium hominis]
          Length = 916

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 19/208 (9%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++ + ++   S  + A  G+GKT  L  R++R LL+   P  +L LT T+ AA E+ 
Sbjct: 36  LEQKKAVFTNHESSLLIVAGPGTGKTATLTSRIVRFLLSGYSP--ILALTFTRKAANELK 93

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV  + ++ S +           ++ +K            L   + TP  + + TIH+F
Sbjct: 94  SRVSIVYSSSSKIIYSKSKQIKNDLRNEKS-----------LSDFVPTP-EIFIGTIHSF 141

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI--MLDNNEEL---KKAFYE 194
           C  +++++     +    AI D+E + KL++       + +   L N   L      F E
Sbjct: 142 CWKLLKEYGSFIGLPKDIAIIDKELAIKLLKSCLSENSSKVTSQLSNYSPLIFDPANFDE 201

Query: 195 ILEISNDEDIETLISDIISNRTALKLIF 222
           I     D++I     DI       K ++
Sbjct: 202 IERDDFDDNICDQTHDIKGENEQCKNLY 229


>gi|86749146|ref|YP_485642.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86572174|gb|ABD06731.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           HaA2]
          Length = 845

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L    A P+ +L +T T  
Sbjct: 34  YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +++                                          G   +
Sbjct: 94  AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       +TS+F + D +   +L+++     LA+  +D+     +   
Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 173 GLIDGWKNRGL 183


>gi|289666094|ref|ZP_06487675.1| DNA-dependent helicase II [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 723

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71
            +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  +T T
Sbjct: 1   MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM HR    +   S                                       G+
Sbjct: 59  NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H     +++    +A +   F + D +   +L++   +S 
Sbjct: 81  WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 125


>gi|209559530|ref|YP_002286002.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131]
 gi|209540731|gb|ACI61307.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131]
          Length = 772

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  +++ +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + +D  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135

Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +++    +     ++ +++  E   +D+ S   A +    +   L R + ++
Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186


>gi|190409409|gb|EDV12674.1| DNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|256271681|gb|EEU06720.1| Srs2p [Saccharomyces cerevisiae JAY291]
 gi|290771135|emb|CAY80687.2| Srs2p [Saccharomyces cerevisiae EC1118]
          Length = 1174

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%)

Query: 13  TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
            + L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T
Sbjct: 8   WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ E++        E+L                                
Sbjct: 68  FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+ C  I+ +F    ++   + I DE++   ++++  +  
Sbjct: 96  ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139


>gi|209884405|ref|YP_002288262.1| DNA helicase II [Oligotropha carboxidovorans OM5]
 gi|209872601|gb|ACI92397.1| DNA helicase II [Oligotropha carboxidovorans OM5]
          Length = 857

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 42/190 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +    ++           V A AG+GKT +L  R+  +L    A PS +L +T T  A
Sbjct: 35  LTALNPEQREAVETLDGPVLVLAGAGTGKTRVLTSRIAHILSEGRARPSEILSVTFTNKA 94

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++                                          G   + 
Sbjct: 95  AREMKQRLGVMLGQTVE-------------------------------------GMPWLG 117

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA    I++     A + S+F + D +   +L+++     L +  +D+     +    
Sbjct: 118 TFHAIAGRILRVHAELAQLKSNFTVLDVDDQIRLLKQ----LLQAEGIDDKRWPARMLAG 173

Query: 195 ILEISNDEDI 204
           +++   +  +
Sbjct: 174 LIDGWKNRGL 183


>gi|288905388|ref|YP_003430610.1| ATP-dependent DNA helicase (DNA helicase II) [Streptococcus
           gallolyticus UCN34]
 gi|325978377|ref|YP_004288093.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732114|emb|CBI13679.1| Putative ATP-dependent DNA helicase (DNA helicase II)
           [Streptococcus gallolyticus UCN34]
 gi|325178305|emb|CBZ48349.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 771

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDKQAEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P  +D               
Sbjct: 59  TFTNKAAREMRER----------------------AMALNPATADTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ ++ 
Sbjct: 136 ERAILGTISNAKNDLLDE 153


>gi|313888327|ref|ZP_07821998.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845730|gb|EFR33120.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 734

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
           I+ ++  + E LLA++      + A AGSGKT ++  ++  L+     PS  +L +T T 
Sbjct: 3   INTLNDKQKEALLATE--GPLLILAGAGSGKTKVVTSKIAYLIEELQVPSWKILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV ++I                                       E    + 
Sbjct: 61  KAANEMRDRVSKLID--------------------------------------EDISSMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++   +   +S F I D +    +++EA    
Sbjct: 83  IGTFHSICVRILRKNIDKIGYSSSFTIYDRDDQLTVVKEAIGEL 126


>gi|6322369|ref|NP_012443.1| Srs2p [Saccharomyces cerevisiae S288c]
 gi|83305803|sp|P12954|SRS2_YEAST RecName: Full=ATP-dependent DNA helicase SRS2
 gi|4277|emb|CAA33706.1| helicase [Saccharomyces cerevisiae]
 gi|521096|emb|CAA54361.1| RADH [Saccharomyces cerevisiae]
 gi|1008264|emb|CAA89385.1| HPR5 [Saccharomyces cerevisiae]
 gi|285812810|tpg|DAA08708.1| TPA: Srs2p [Saccharomyces cerevisiae S288c]
          Length = 1174

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%)

Query: 13  TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
            + L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T
Sbjct: 8   WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ E++        E+L                                
Sbjct: 68  FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+ C  I+ +F    ++   + I DE++   ++++  +  
Sbjct: 96  ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139


>gi|319955254|ref|YP_004166521.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319423914|gb|ADV51023.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 794

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 47/215 (21%)

Query: 16  LISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            I+Q    Q            V A AGSGKT +L  R+  L+        +L LT T  A
Sbjct: 22  YINQLNDAQRAPVLHKDGPLIVIAGAGSGKTRVLTYRIAYLMSLGIDSFNILALTFTNKA 81

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  I+                            ++A++L++            
Sbjct: 82  AREMKARIAAIVGN--------------------------AEAKNLMM-----------G 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL------ 188
           T H+    I++    +    S+F I D + S++LI    K       +   +++      
Sbjct: 105 TFHSVFARILRYDGDKLGYPSNFTIYDTQDSQRLIASIIKEMGLDKDVYKYKQVQNRISS 164

Query: 189 -KKAFYEILEISNDEDIETLISDIISNRTALKLIF 222
            K +   +    ND +++   +D ++ R  +  I+
Sbjct: 165 YKNSLITVRAYFNDAELQE--ADAMAKRPRMGDIY 197


>gi|221369980|ref|YP_002521076.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221163032|gb|ACM04003.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 679

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 55/165 (33%), Gaps = 38/165 (23%)

Query: 16  LISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            + +    Q  A +       P     V A AGSGKT  L  RV  LL+  A P  +L +
Sbjct: 3   YLERLNERQRQAVEFGVSGTQPAPPLLVIAGAGSGKTSTLAHRVAHLLVKGADPRRILLM 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AAAE++ RV  I                                RH L       
Sbjct: 63  TFSRRAAAELTRRVERIT-------------------------------RHALGQAHAAE 91

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                 T H     I+++      +   F I D E S  L+   +
Sbjct: 92  ALTWAGTFHGIGARILRENAALIGLNPDFTIHDREDSADLMNLVR 136


>gi|327314682|ref|YP_004330119.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326944136|gb|AEA20021.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 1094

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    + L++ N      +L +T T  A  EM  R+L  +   +H L D 
Sbjct: 10  ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHHLPDS 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               +    +           A   L  +       +VQTI AF +++++    E N+T+
Sbjct: 70  QAYFDQVVRKTGFQETVIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 129

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  I   +   +   +A    + S+  +  EE+ K   + ++ + ++D
Sbjct: 130 NLRIDLNDDQVE--AQAVDEMIDSL--EEGEEVLKWIRDYIDKNIEDD 173


>gi|319745133|gb|EFV97457.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae ATCC
           13813]
          Length = 766

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 42/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  I  ++  ++E +  +D      + A AGSGKT +L  R+  L+     +P  +L 
Sbjct: 7   EMNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILA 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R                           P   D              
Sbjct: 65  ITFTNKAAREMRER----------------------AIALNPATQDTL------------ 90

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                + T H+ C  I+++         +F I D  + + L++   K  
Sbjct: 91  -----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 134


>gi|323354422|gb|EGA86261.1| Srs2p [Saccharomyces cerevisiae VL3]
          Length = 1143

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%)

Query: 13  TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
            + L+SQ  ++Q  A+  D TR   V A  G+GKT +L  RV  L+L +  HP  ++  T
Sbjct: 8   WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+ E++        E+L                                
Sbjct: 68  FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T H+ C  I+ +F    ++   + I DE++   ++++  +  
Sbjct: 96  ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139


>gi|313675649|ref|YP_004053645.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126]
 gi|312942347|gb|ADR21537.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126]
          Length = 1084

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 7/201 (3%)

Query: 39  NAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           +AGSGKT  L +  L+L   N  H   +L +T T  A  EM  R+++ +  +S  +   +
Sbjct: 13  SAGSGKTFTLTREYLKLAFQNPDHFKKILAVTFTNKATQEMKERIIQNLFDFSRKTPSDM 72

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
             ++  I     +     K++ LL++IL       VQTI  F + +M+ F  E ++    
Sbjct: 73  GEQLKSILDLT-DTELKEKSQKLLVSILHNYSRFSVQTIDRFFQNVMRSFARELSLQGDG 131

Query: 158 AIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEI-LEISNDEDIETLISDIISNR 215
            +         + +A    +   + D     LK    +  +    D+    +  DI+S  
Sbjct: 132 ELLLNTDE---VRQAVLDLMMEDISDPKHVALKNWIIDFSVNKLEDKGKWDVRKDILSFT 188

Query: 216 TALKLIFFFFSYLWRRKIIEK 236
             L    F        K I  
Sbjct: 189 EELMKDDFKVIEDALDKEISD 209


>gi|15678500|ref|NP_275615.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621541|gb|AAB84978.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 916

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 44/182 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           T+ +++          V A  G+GKT +LV+RV  L+      P  +L +T T+ AA E+
Sbjct: 13  TEKQKMAVKKTEGPLVVVAGPGAGKTRVLVERVAYLVKRKGVSPENILVITFTEKAAGEL 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++  +   + L                                      +++ TIH+
Sbjct: 73  KARLINCVGLDAEL--------------------------------------MQISTIHS 94

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  ++   P E    + F I DEE     +    ++    I LD   ++ +  +  +E 
Sbjct: 95  FCSKVLSDHPEEHEFGAGFEILDEESQLIFL----RTVFYKIGLDRYMKMGE-VHRAIEF 149

Query: 199 SN 200
            N
Sbjct: 150 FN 151


>gi|169824301|ref|YP_001691912.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
 gi|167831106|dbj|BAG08022.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
          Length = 967

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 36/164 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I  +++++L  S   ++  V+A AG+GKT ++ +R   +        +++C+T T  AA
Sbjct: 1   MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+++ +     + D                                    + V T
Sbjct: 61  DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           I +FC+ I+       +I   F I +++Q+ KL+ E     L +
Sbjct: 85  ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNEIFDKILEN 128


>gi|160914437|ref|ZP_02076652.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991]
 gi|158433595|gb|EDP11884.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991]
          Length = 729

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 39/147 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R   + A AGSGKT ++  R+  L+   + +P+ +L +T T  AA EM  RV   +   
Sbjct: 19  DRHLRIIAGAGSGKTRVVTTRIAYLIEQCHIYPNKILAITFTNKAAREMKERVEGFLG-- 76

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                               +T   + + TIH+FC  ++++  L
Sbjct: 77  ------------------------------------DTAQAVMISTIHSFCVRLLREDIL 100

Query: 150 EANITSHFAIADEEQSKKLIEEAKKST 176
                 +F I D +  + ++ +A K  
Sbjct: 101 VHGYPRNFTILDADDQRSILRDAYKQL 127


>gi|116490506|ref|YP_810050.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1]
 gi|290889906|ref|ZP_06552993.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429]
 gi|116091231|gb|ABJ56385.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1]
 gi|290480516|gb|EFD89153.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429]
          Length = 748

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 45/193 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            ++ +  ++  + E +L ++      + A AGSGKT +L  RV  L+   +  P ++L +
Sbjct: 1   MNDLLTGLNDKQKEAVLTTE--GPLLIMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  ++                                       E  
Sbjct: 59  TFTNKAAREMKERIAGLVDE-------------------------------------EDA 81

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-E 187
             + V T HA    I+++   +   T+ F+I D    + L+    K  L  +  D+N+ +
Sbjct: 82  RSIWVSTFHALSARILRRDVDKIGFTTSFSILDSSGQRTLM----KHVLNDLNYDSNQYD 137

Query: 188 LKKAFYEILEISN 200
            K     I    N
Sbjct: 138 PKSILASISNFKN 150


>gi|186475566|ref|YP_001857036.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184192025|gb|ACC69990.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 750

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 35/165 (21%)

Query: 17  ISQTKSEQL-----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +       + P+ +  V A AGSGKT+ L  RV  L++    P  +L LT +
Sbjct: 51  LNDAQREAVEYGADRVAHPSGALLVIAGAGSGKTNTLAHRVANLVVKGVDPRRILLLTFS 110

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM+ RV   I   +  +   L+  +T                             
Sbjct: 111 RRAALEMTRRVT-RIAGMALGTRGALAQGLT----------------------------- 140

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H+    +++++     ++  F I D E S  L+   +   
Sbjct: 141 WSGTFHSVGARLLREYADLIGLSPSFTINDREDSADLLNLVRHEL 185


>gi|116513593|ref|YP_812499.1| superfamily I DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092908|gb|ABJ58061.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 753

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            SE   L      +            V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R ++++                                       +  
Sbjct: 61  TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++          F+IAD  +   L++   +  
Sbjct: 83  ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130


>gi|325125238|gb|ADY84568.1| ATP-dependent helicase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 753

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            SE   L      +            V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R ++++                                       +  
Sbjct: 61  TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++          F+IAD  +   L++   +  
Sbjct: 83  ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130


>gi|313123176|ref|YP_004033435.1| ATP-dependent DNA helicase pcra [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279739|gb|ADQ60458.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 753

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            SE   L      +            V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R ++++                                       +  
Sbjct: 61  TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++          F+IAD  +   L++   +  
Sbjct: 83  ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130


>gi|295396697|ref|ZP_06806843.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970443|gb|EFG46372.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 769

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 43/169 (25%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
              E ++ ++  + + ++ S    +  + A AGSGKT +L +R+  +L    AHP  +L 
Sbjct: 24  HQDELLEGLNPQQRQAVMHS--GSALLIVAGAGSGKTTVLTRRIAHILATGQAHPGQILA 81

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV  ++                             +AR         
Sbjct: 82  ITFTNKAAREMLDRVTSLVG---------------------------ERAR--------- 105

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H+ C  I+++     + TS+F+I D + S +LI +  K  
Sbjct: 106 --GMWISTFHSACVRILRREAR--DRTSNFSIYDAQDSLRLITQVTKEL 150


>gi|192292387|ref|YP_001992992.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
 gi|192286136|gb|ACF02517.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
          Length = 848

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L    A P+ +L +T T  
Sbjct: 34  YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +++                                          G   +
Sbjct: 94  AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       +TS+F + D +   +L+++     LA+  +D+     +   
Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 173 GLIDGWKNRGL 183


>gi|300813139|ref|ZP_07093516.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495893|gb|EFK31038.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 753

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            SE   L      +            V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R ++++                                       +  
Sbjct: 61  TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++          F+IAD  +   L++   +  
Sbjct: 83  ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130


>gi|213962690|ref|ZP_03390951.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno]
 gi|213954685|gb|EEB66006.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno]
          Length = 783

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 75/218 (34%), Gaps = 49/218 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +L      ++           V A AGSGKT +L  R+  L+        +L LT T  A
Sbjct: 7   ELNRLNAPQRAAVLQKEGPIIVIAGAGSGKTRVLTYRIANLMRQGVDAFHILALTFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +I+      +                                     L + 
Sbjct: 67  ANEMKKRIADIVGNSEAKN-------------------------------------LWMG 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+    I++    +     +F I D + S++LI    K           +EL K  Y+
Sbjct: 90  TFHSVFAKILRFEADKLGYPQNFTIYDTQDSQRLINGIIKE----------KELDKDVYK 139

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232
             +I   + I +L +++I+ R          +   R++
Sbjct: 140 YKQIQ--QRISSLKNNLITVRAYFNNPELVENDAIRKQ 175


>gi|39936568|ref|NP_948844.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39650424|emb|CAE28947.1| DNA helicase II [Rhodopseudomonas palustris CGA009]
          Length = 848

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L    A P+ +L +T T  
Sbjct: 34  YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +++                                          G   +
Sbjct: 94  AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       +TS+F + D +   +L+++     LA+  +D+     +   
Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 173 GLIDGWKNRGL 183


>gi|325684643|gb|EGD26798.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 753

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            SE   L      +            V A AGSGKT +L +R+  L+      P  +L +
Sbjct: 1   MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R ++++                                       +  
Sbjct: 61  TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T HA C  I+++          F+IAD  +   L++   +  
Sbjct: 83  ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130


>gi|225023801|ref|ZP_03712993.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC
           23834]
 gi|224943456|gb|EEG24665.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC
           23834]
          Length = 720

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 72/210 (34%), Gaps = 45/210 (21%)

Query: 21  KSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            +EQL A   P +SA V A AGSGKT +L  R+  LL +  A   +++ +T T  AA EM
Sbjct: 2   NNEQLSAVTWPAQSALVLAGAGSGKTKVLTTRIAWLLHSGQASLHSVMAVTFTNKAAKEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++                                            + + T H 
Sbjct: 62  RARLEAMLP--------------------------------------LNIRAMWLGTFHG 83

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C   ++    EA + + F I D      L     K  L ++ +       +A    +  
Sbjct: 84  LCHRFLRLHHKEAGLPAAFQILDSSDQLAL----VKRLLKALNISEEIIAPRALQGFINA 139

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYL 228
             +  +   +    SN    +LI  +  Y 
Sbjct: 140 QKEAGLRAAVLHA-SNPFEQRLIECYAEYD 168


>gi|160947380|ref|ZP_02094547.1| hypothetical protein PEPMIC_01314 [Parvimonas micra ATCC 33270]
 gi|158446514|gb|EDP23509.1| hypothetical protein PEPMIC_01314 [Parvimonas micra ATCC 33270]
          Length = 750

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 42/193 (21%)

Query: 14  IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL+    ++QL A +   S   V A AGSGKT +L  ++   +L  N     +L +T T
Sbjct: 1   MDLLKGLNNKQLEAVEHFGSPLLVLAGAGSGKTKVLTTKIAYAVLEKNVSEYEILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A  EM  R+  I                                             +
Sbjct: 61  NKAGKEMKERIENIFKR--------------------------------------DISSM 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I++    +   +++F I D +  K +++E  K  L         E K A
Sbjct: 83  WIGTFHSICSKILRFNIEKIGYSNNFTIYDRDDQKLVLKEIFKQNLT--WESVLGEFKNA 140

Query: 192 FYEILEISNDEDI 204
              I+  +  +++
Sbjct: 141 IIGIISDAKGKNV 153


>gi|118587527|ref|ZP_01544951.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163]
 gi|118431978|gb|EAV38720.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163]
          Length = 748

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 45/193 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            ++ +  ++  + E +L ++      + A AGSGKT +L  RV  L+   +  P ++L +
Sbjct: 1   MNDLLTGLNDKQKEAVLTTE--GPLLIMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+  ++                                       E  
Sbjct: 59  TFTNKAAREMKERIAGLVDE-------------------------------------EDA 81

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-E 187
             + V T HA    I+++   +   T+ F+I D    + L+    K  L  +  D+N+ +
Sbjct: 82  RSIWVSTFHALSARILRRDVDKIGFTTSFSILDSSGQRTLM----KHVLNDLNYDSNQYD 137

Query: 188 LKKAFYEILEISN 200
            K     I    N
Sbjct: 138 PKSILASISNFKN 150


>gi|304440549|ref|ZP_07400436.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371027|gb|EFM24646.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 729

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 80/227 (35%), Gaps = 45/227 (19%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
              ++ ++  + E    +       V A AGSGKT ++ +++  L+     +PS +L +T
Sbjct: 1   MNLLEGLNDRQRE--AVTTTEGPVLVLAGAGSGKTSVVTKKIAYLMEEKKVYPSKILAIT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV                                         ++ T  
Sbjct: 59  FTNKAANEMKTRVE---------------------------------------RLIHTDF 79

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            + + T H+    I+++         +F I D +  + ++++  K    S        ++
Sbjct: 80  NMWIGTFHSIAVRILRRDIDRLGYDRNFTIYDTKDQQTVVKDIIKRMDLSADSYKPRTIQ 139

Query: 190 KAFYEILEISNDEDIETLISD-IISNRTALKLIFFFFSYLWRRKIIE 235
                I        +E ++S+ I S R   ++ + +   L +   ++
Sbjct: 140 AKISSIKNSGG--RVEDVLSESIYSERITKEIYYEYEKELKKNNALD 184


>gi|260584785|ref|ZP_05852530.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC
           700633]
 gi|260157442|gb|EEW92513.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC
           700633]
          Length = 755

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 45/191 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L  R+  +L     HP  +L +T T  AA EM
Sbjct: 2   NDRQKEAVQHTQGPLLIMAGAGSGKTRVLTHRMAYILAEEEVHPWNILAITFTNKAAREM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   +                                        + V T H+
Sbjct: 62  KERVSQLVGPQAE--------------------------------------DMWVSTFHS 83

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILE 197
            C  I+++          F I D  +     + A K  L  + +D+ + + +     I +
Sbjct: 84  MCVRILRRDIELLGYQRSFTICDPSEQ----QTAMKRILKKLDIDSEKYDYRMILNRISQ 139

Query: 198 ISND-EDIETL 207
             ND ED+E  
Sbjct: 140 AKNDLEDVEEF 150


>gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 829

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 45/188 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++ + +    +  V A  GSGKT +L +RVLR + +   P  +LCLT T  AA EMS
Sbjct: 6   NQEQESIINHIQGALLVLAPVGSGKTWVLSERVLRAVNSGIPPQQILCLTFTNRAAQEMS 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +                                       E    L ++T H  
Sbjct: 66  DRLRAYLP--------------------------------------EQANQLTIKTFHGL 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  +++    +A + + F+I DE   K+L++E    T         ++L+K F  ++   
Sbjct: 88  CAWMLRLEGQQAGLAADFSIYDENDCKELLKEISGRT-------KPQDLQKLFAALIACK 140

Query: 200 NDEDIETL 207
            +     L
Sbjct: 141 TEATPAQL 148


>gi|325923795|ref|ZP_08185410.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
 gi|325545728|gb|EGD16967.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
          Length = 723

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71
            +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  +T T
Sbjct: 1   MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM HR    +   S                                       G+
Sbjct: 59  NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H     +++    +A +   F + D +   +L++   +S 
Sbjct: 81  WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 125


>gi|189423552|ref|YP_001950729.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189419811|gb|ACD94209.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 736

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 41/165 (24%)

Query: 14  IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +DL++   + ++           + A AGSGKT ++  R++ L+      P  +L +T T
Sbjct: 1   MDLLAHLNTPQKQAVLHTEGPLLILAGAGSGKTRVITHRIVHLIREHGIRPWNILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM+ RV  ++ +                                           
Sbjct: 61  NKAAKEMAERVRHLLGSHDTPL-------------------------------------- 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T HA C  I++Q   +    S FAI D++ S++L+++  K  
Sbjct: 83  -IATFHATCGRILRQDIHQLGYESSFAIYDDKDSERLLKDLIKEL 126


>gi|238796709|ref|ZP_04640215.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969]
 gi|238719440|gb|EEQ11250.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969]
          Length = 1136

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 38/151 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              ++  A+    +  + A  G+GKT  LV RV  LL     P  +L LT +  AA EM+
Sbjct: 198 NAEQEKAAAHRGPAFLLEAGPGTGKTQTLVGRVKGLLADGVDPRKILLLTFSNKAAGEMA 257

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  + T                                      E    + + T H+F
Sbjct: 258 ERIARVDT--------------------------------------EAAAAIWIGTFHSF 279

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
              ++++F  E N+     + D  ++ +L+E
Sbjct: 280 GLDLIRRFHDELNLPLDPRLLDRTEAVELLE 310


>gi|332042510|gb|EGI78712.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4]
          Length = 779

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 55/162 (33%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            +SQ    QL  +        V A AGSGKT +L  R+  L+        +L LT T  A
Sbjct: 4   YLSQLNEAQLAPTIQKDGPMIVIAGAGSGKTRVLTYRIAYLMNQGVDSFNILALTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ EI+      +                                     L + 
Sbjct: 64  AKEMKGRIAEIVGDGEAKN-------------------------------------LWMG 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++         S+F I D + S+KL+    K  
Sbjct: 87  TFHSVFAKILRFEGHHLGFPSNFTIYDTQDSQKLLGSIIKEM 128


>gi|91977833|ref|YP_570492.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91684289|gb|ABE40591.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           BisB5]
          Length = 847

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L    A P+ +L +T T  
Sbjct: 34  YLSGLNPEQREAVESLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +++                                          G   +
Sbjct: 94  AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       +TS+F + D +   +L+++     LA+  +D+     +   
Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 173 GLIDGWKNRGL 183


>gi|150005966|ref|YP_001300710.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934390|gb|ABR41088.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
          Length = 1058

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91
               A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L  +   W  
Sbjct: 8   LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D     +    + + P +   + A   L  ++      +V+TI +F +++M+    E 
Sbjct: 68  DKDSDPYLQKITEELEMPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            + ++  I  E  + +++ +A  S +  +     +      Y +LE   +   + 
Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175


>gi|113866335|ref|YP_724824.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113525111|emb|CAJ91456.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16]
          Length = 699

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 31/163 (19%)

Query: 16  LISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
            +S+   EQ  A +        + A AGSGKT+ L  RV  L+LA A P  +L LT ++ 
Sbjct: 22  YLSRLNPEQRAAVEHGSDAPLLIIAGAGSGKTNTLAHRVAHLVLAGADPRRILLLTFSRR 81

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV  I+            A +                                
Sbjct: 82  AAAEMGRRVERIVDQALGTQTGAGRAALQ-----------------------------WS 112

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA    +++++     ++  F I+D   +  L+   +   
Sbjct: 113 GTFHAIGARLLREYAETLGLSPAFTISDRGDAADLMHVVRHDL 155


>gi|330813748|ref|YP_004357987.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486843|gb|AEA81248.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 744

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           + ++   ++Q  A         + A AGSGKT +L  RV  L+       + +LC+T T 
Sbjct: 9   NYLNTLNNQQKEAVLHTDGPLLILAGAGSGKTKVLTTRVTHLIQSKKCFSNQILCVTFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                                        T     
Sbjct: 69  KAANEMRERVQGLVVG-------------------------------------NTNSVPW 91

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    I+++      +   F I D     KLI    K+ LA+  +D  +   K  
Sbjct: 92  LGTFHSISNKILRKHAEAVGLKPSFTILDTLDQLKLI----KNILAAENIDIKKNPPKLI 147

Query: 193 YEILEISNDEDI 204
             +++   ++ +
Sbjct: 148 AHLIDHWKNKAL 159


>gi|149372162|ref|ZP_01891432.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49]
 gi|149354929|gb|EDM43491.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49]
          Length = 780

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            + Q    QL  +     +  V A AGSGKT +L  R+  L+     P  +L LT T  A
Sbjct: 12  YLDQLNEAQLAPTIQKDGAMIVIAGAGSGKTRVLTFRIAYLMSQGVDPFNILALTFTNKA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  I+ A    +                                     L + 
Sbjct: 72  AREMKSRITTIVGASEGKN-------------------------------------LWMG 94

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++    +     +F I D + S+ +I    K  
Sbjct: 95  TFHSIFAKILRFEADKLGYPGNFTIYDTQDSQSVIRAVIKEM 136


>gi|307706682|ref|ZP_07643488.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321]
 gi|307617926|gb|EFN97087.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321]
          Length = 763

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDTGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ I+ 
Sbjct: 136 ERSILGTISNAKNDLIDD 153


>gi|284052478|ref|ZP_06382688.1| ATP-dependent nuclease subunit A [Arthrospira platensis str.
           Paraca]
 gi|291571372|dbj|BAI93644.1| putative helicase [Arthrospira platensis NIES-39]
          Length = 1070

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 30/179 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +S T ++Q  A+ P +S  V+A AG+GKT++LV+R L  L      P  ++ +T T+ AA
Sbjct: 1   MSLTNAQQAAATSP-QSIMVTAGAGTGKTYMLVERYLYYLREKGLSPLEIVAVTFTEKAA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+   +                    + PN+ D          IL       + T
Sbjct: 60  QELRSRIRSQVRQ------------------QLPNRPD----------ILAELEAAPIST 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           IHA    I ++ P  A + + F I +  + K  + E  ++ L+ + +   E +  +   
Sbjct: 92  IHALASRICREHPQAAKVPADFQILEYLEGKIWLYEGLETALSKLPIQVFETIDYSLLS 150


>gi|188993614|ref|YP_001905624.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167735374|emb|CAP53588.1| DNA helicase II [Xanthomonas campestris pv. campestris]
          Length = 723

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71
            +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  +T T
Sbjct: 1   MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM HR    +   S                                       G+
Sbjct: 59  NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H     +++    +A +   F + D +   +L++   +S 
Sbjct: 81  WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 125


>gi|283852748|ref|ZP_06370012.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283571829|gb|EFC19825.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 733

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL       Q  A         V A AGSGKT  +V R+ RL+     P+++L LT T+
Sbjct: 1   MDLERDLNPAQRQAVLTTEGPVLVIAGAGSGKTRTIVYRLARLVAGGVDPASILLLTFTR 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM                                   +S+A  LL    +   G+ 
Sbjct: 61  KAAQEM-----------------------------------LSRAGLLLAMGPDGVSGVS 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T HAF  A ++++   A     F + D+  S+ ++ +A K  L     D +   + A 
Sbjct: 86  GGTFHAFAFATLRRYHAAAGYPDGFTVLDQADSEDVLGQA-KDKLGIGKGDRSFPRRSAI 144

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFF 223
             +L  + ++  E  ++D++S R A  L+ +
Sbjct: 145 LGLLSKARNK--EMAVADVLS-REAFHLLPY 172


>gi|152990115|ref|YP_001355837.1| putative recombination protein RecB [Nitratiruptor sp. SB155-2]
 gi|151421976|dbj|BAF69480.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp.
           SB155-2]
          Length = 855

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 7/126 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AG+GKT+ L    L  L   A+P  ++ +T T  AA EM  RV++ +       
Sbjct: 4   IALKASAGTGKTYSLALYYLARLFEGANPYDIVAITFTNKAANEMRERVIDFLFDL---- 59

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           DE    +I  I  K P    M K + ++   L     L + TI AF + I+++F   A++
Sbjct: 60  DEEKLEQIASIIQKDPKTLSM-KQQQVIRKFL--VSRLNILTIDAFVQKILRKFAFFASL 116

Query: 154 TSHFAI 159
           +  F I
Sbjct: 117 SPDFTI 122


>gi|291279137|ref|YP_003495972.1| exodeoxyribonuclease V subunit beta [Deferribacter desulfuricans
           SSM1]
 gi|290753839|dbj|BAI80216.1| exodeoxyribonuclease V, beta subunit [Deferribacter desulfuricans
           SSM1]
          Length = 1098

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 6/180 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +    LRL++  +  P  +L +T T  AA E+ +R+ + +       
Sbjct: 18  LIEASAGTGKTYTIAVIYLRLIIEKSMLPENILVVTFTVDAAEELKNRIRKFLVNAYRFI 77

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           +E      + ++          K    L   L       + TIH FC+ ++ + PLE   
Sbjct: 78  NEESDDIDSNLKLYLEGFKGDKKVLSHLKMALFMMDESAIFTIHKFCKKVLVENPLETKS 137

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
             ++ I  E   K+LIE++       +    + ++    + I   +   D E  I D + 
Sbjct: 138 LFNYEI--ESSDKELIEDSVYHLFRKVFYGEDPKIIDLLFRIYSPT---DFENFIEDFLR 192


>gi|116620297|ref|YP_822453.1| ATP-dependent DNA helicase Rep [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223459|gb|ABJ82168.1| ATP-dependent DNA helicase, Rep family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 788

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 45/194 (23%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D +    ++Q  A +       + A AGSGKT ++  R+  ++ + +  PS +L +T T
Sbjct: 1   MDFLKGLNAQQREAVTHIDGPLLILAGAGSGKTRVITHRIAHIITSRHVPPSAVLAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++       D  L +  T                             
Sbjct: 61  NKAAKEMRERVAALL------EDVPLDSMPT----------------------------- 85

Query: 132 KVQTIHAFCEAIMQQFPL-EANITSH----FAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            V T H+FC  ++++     A +       F I D+E   ++I+ A ++           
Sbjct: 86  -VSTFHSFCVRLLRRDGDPLARVRPGFTRRFTIYDDEDQLQIIKAAYRTL--GFDEKEFM 142

Query: 187 ELKKAFYEILEISN 200
           + + A   I    N
Sbjct: 143 QYRAALSRISHAKN 156


>gi|322437047|ref|YP_004219259.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
 gi|321164774|gb|ADW70479.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 929

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 45/173 (26%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S  ++ ++    +Q           + A AGSGKT ++  R+  L+      P  +L +
Sbjct: 1   MSRLLEKMN--PQQQQGIQTVDGPVLLLAGAGSGKTRVITHRIAYLIEERGVSPDAILAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM+ RV +II   S     +                                
Sbjct: 59  TFTNKAAKEMAERVDKIIGHSSLAKPTL-------------------------------- 86

Query: 129 GGLKVQTIHAFCEAIMQQFPLEA-----NITSHFAIADEEQSKKLIEEAKKST 176
                 T H+FC  ++++           +T  FAI DE   + +++ A K  
Sbjct: 87  -----STFHSFCVRVLRRDIEALQVGGKGLTRTFAIYDETDQQAVVKSALKRL 134


>gi|163846878|ref|YP_001634922.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222524699|ref|YP_002569170.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163668167|gb|ABY34533.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222448578|gb|ACM52844.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 746

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 43/193 (22%)

Query: 15  DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL++     +Q   +  T    V A  GSGKT +L  R+  L+      P  +L +T T 
Sbjct: 4   DLLANLNEPQQRAVTTVTGPVLVLAGPGSGKTRVLTHRIAYLIAETGIDPLQILAVTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R+  ++                                            + 
Sbjct: 64  KAAREIRERLNLLVGETV-------------------------------------AHEIT 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C   +++  +       F I D +  ++L+    K  L  + L+  +   +A 
Sbjct: 87  IGTFHAICTRWLRRDIVHLGRERDFVIYDSDDQERLM----KRVLRELNLNEKQYPPRAI 142

Query: 193 YEILEISNDEDIE 205
             ++  + +E ++
Sbjct: 143 LGVISRAKNELVD 155


>gi|87199314|ref|YP_496571.1| ATP-dependent DNA helicase Rep [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134995|gb|ABD25737.1| ATP-dependent DNA helicase, Rep family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 765

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 49/223 (21%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  +D ++  + E    +       + A AG+GKT  L  R+  LL    A PS +LC+
Sbjct: 12  SNAWLDGLNPPQRE--AVTTTEGPVLMLAGAGTGKTAALTARLANLLRQRLAWPSEILCV 69

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  +I                                          
Sbjct: 70  TFTNKAAREMRERVGNLIGPAVE------------------------------------- 92

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G   + T HA    ++++      + S+F I D +   +L+++     + +  +D     
Sbjct: 93  GMPWLGTFHAIAAKMLRRHAELVGLQSNFTIIDTDDQLRLLKQ----LVVAEGIDEKRWP 148

Query: 189 KKAFYEILE-----ISNDEDIETLISDIISNRTALKLIFFFFS 226
            +    +++       N  D++ L ++  +N    +    + +
Sbjct: 149 ARQLAGLIDKWKNRGLNPADLDALENEAYANGKGQRFYALYQN 191


>gi|294775536|ref|ZP_06741046.1| UvrD/REP helicase [Bacteroides vulgatus PC510]
 gi|294450586|gb|EFG19076.1| UvrD/REP helicase [Bacteroides vulgatus PC510]
          Length = 1058

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91
               A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L  +   W  
Sbjct: 8   LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D     +    + + P +   + A   L  ++      +V+TI +F +++M+    E 
Sbjct: 68  DKDSDPYLQKITEELEMPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            + ++  I  E  + +++ +A  S +  +     +      Y +LE   +   + 
Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175


>gi|325916758|ref|ZP_08179012.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537012|gb|EGD08754.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
           35937]
          Length = 723

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71
            +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  +T T
Sbjct: 1   MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM HR    +   S                                       G+
Sbjct: 59  NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H     +++    +A +   F + D +   +L++   +S 
Sbjct: 81  WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 125


>gi|189466027|ref|ZP_03014812.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM
           17393]
 gi|189434291|gb|EDV03276.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM
           17393]
          Length = 1073

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 12/210 (5%)

Query: 34  AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW--- 89
               A+AGSGKT  L V+ +  L+L       +L +T T  A AEM  R+L+ +      
Sbjct: 4   LVYKASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIWVS 63

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              S+  L+     +Q K  ++ D+  A    L  +L      +V+TI +F +++M+   
Sbjct: 64  DPASEPYLNRIREDLQRKNLSEDDIRLAAGTALQYMLHDYSRFRVETIDSFFQSVMRNLA 123

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            E  ++ +  I  E  + +++ +A  S +  +              +L+  N+   +   
Sbjct: 124 RELELSPNLNI--ELNNTEVLSDAVDSLIEKL-----TPSSPVLAWLLDYINERIADDKR 176

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            ++ +         F   Y+ + + + + L
Sbjct: 177 WNVSNEIKRFGWNIFDEGYIEQGEGLRQQL 206


>gi|303233965|ref|ZP_07320614.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
 gi|302494890|gb|EFL54647.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
          Length = 967

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 36/164 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I  +++++L  S   ++  V+A AG+GKT ++ +R   +        +++C+T T  AA
Sbjct: 1   MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+++ +     + D                                    + V T
Sbjct: 61  DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           I +FC+ I+       +I   F I +++Q+ KL+ E     L +
Sbjct: 85  ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNEIFDKILEN 128


>gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS]
 gi|119870445|ref|YP_940397.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS]
 gi|108771713|gb|ABG10435.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS]
 gi|119696534|gb|ABL93607.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS]
          Length = 785

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 42/160 (26%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++  + + +L         + A AGSGKT +L +R+  LL A +     +L +T 
Sbjct: 18  ELLDGLNPQQRQAVL--HEGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ ++                             +AR            
Sbjct: 76  TNKAAAEMRERVVHLVG---------------------------PRARS----------- 97

Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169
           + V T H+ C  I++ Q  L   + S+F+I D + S++L+
Sbjct: 98  MWVATFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 137


>gi|320546849|ref|ZP_08041154.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812]
 gi|320448513|gb|EFW89251.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812]
          Length = 770

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDKQAEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFINPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P  +D               
Sbjct: 59  TFTNKAAREMRER----------------------AMALNPATADTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKTLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ ++ 
Sbjct: 136 ERAILGTISNAKNDLLDE 153


>gi|265753493|ref|ZP_06088848.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA]
 gi|263235207|gb|EEZ20731.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA]
          Length = 1058

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91
               A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L  +   W  
Sbjct: 8   LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D     +    + + P +   + A   L  ++      +V+TI +F +++M+    E 
Sbjct: 68  DKDSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            + ++  I  E  + +++ +A  S +  +     +      Y +LE   +   + 
Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175


>gi|254881838|ref|ZP_05254548.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA]
 gi|319641141|ref|ZP_07995844.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A]
 gi|254834631|gb|EET14940.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387272|gb|EFV68148.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A]
          Length = 1058

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91
               A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L  +   W  
Sbjct: 8   LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D     +    + + P +   + A   L  ++      +V+TI +F +++M+    E 
Sbjct: 68  DKDSDPYLQKITEELEIPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            + ++  I  E  + +++ +A  S +  +     +      Y +LE   +   + 
Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175


>gi|319899138|ref|YP_004159231.1| DNA helicase II [Bartonella clarridgeiae 73]
 gi|319403102|emb|CBI76660.1| DNA helicase II [Bartonella clarridgeiae 73]
          Length = 817

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 44/198 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q   E ++ ++    ++    +      V A AG+GKT +L  R+  +L    AHP  +L
Sbjct: 38  QYEPEYLEKLN--PEQKQAVINTEGPILVLAGAGTGKTRVLTTRISHILHLGLAHPKQIL 95

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  +A EM  R+ E+I                                        
Sbjct: 96  AVTFTNKSAHEMKMRIGELIGKTVE----------------------------------- 120

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    I++++    ++ S+F I D +   +L+++     + +  LD+  
Sbjct: 121 --GMPWLGTFHSTGVKILRRYAELVDLKSNFTILDRDDVIRLLKQ----LIQAEGLDDKR 174

Query: 187 ELKKAFYEILEISNDEDI 204
              +    +++   ++ +
Sbjct: 175 WPARNLAMMIDSWKNQGL 192


>gi|291456202|ref|ZP_06595592.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213]
 gi|291381479|gb|EFE88997.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213]
          Length = 1311

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 18/180 (10%)

Query: 22  SEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
            +  + + P +    V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  
Sbjct: 9   EQAAIINAPAQDDVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLE 68

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV   ++                   + P  S  +  R  L           + T  AF 
Sbjct: 69  RVSAAVSR---------EDSPAAQGAQTPGASTPNFDRAFLKPA--------IFTYDAFF 111

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           + I++Q+ L      +     E  + +L  E     +   + ++          +L +S 
Sbjct: 112 QTIVRQYGLLVGFDQNTQPLSEAGALQLATEVIDEHMDQALSEDLGAFTSLARSVLALSG 171


>gi|153806228|ref|ZP_01958896.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185]
 gi|149130905|gb|EDM22111.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185]
          Length = 1056

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +      
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGIQTG 64

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                +      +     + ++ +A  + L  +L      +V+TI +F +++M+    E 
Sbjct: 65  DKGSEAYLNRIKEETGKTEQEIREAASIALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            ++ +  I  E  + +++ EA  S +  +              +L+  N+   + 
Sbjct: 125 ELSPNLNI--ELNNTEVLSEAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|299140513|ref|ZP_07033651.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735]
 gi|298577479|gb|EFI49347.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735]
          Length = 1075

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L  + ++LL+ N H     L +T T  A  EM  R+L  +   S  L + 
Sbjct: 9   ASAGSGKTFTLAVQYIKLLVENPHAYRHTLAVTFTNKATEEMKMRILSQLYGISRGLKES 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E  K Q      + ++ A + L  ++      +V+TI AF + +++    E  +T+
Sbjct: 69  KPYLESVKQQTSLDETTIINNASYALSELIHNYSYFRVETIDAFFQTVLRNLARELELTA 128

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  I   +Q  +  ++A    +  +  +++  L     + +  + D+D
Sbjct: 129 NLRIELNDQQVE--QQAVDQLIEDL--NDSSLLLSWILDYIHENMDDD 172


>gi|126664112|ref|ZP_01735105.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38]
 gi|126623826|gb|EAZ94521.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38]
          Length = 778

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 52/157 (33%), Gaps = 38/157 (24%)

Query: 12  ETIDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E    ISQ    +QL          V A AGSGKT +L  R+  L+        +L LT 
Sbjct: 3   EMQKYISQLNEAQQLPVLQKDGPMIVIAGAGSGKTRVLTVRIANLMSQGVDAFNILALTF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ +I+                                            
Sbjct: 63  TNKAAREMKKRIADIVGN-------------------------------------NEAKN 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167
           L + T H+    I++    +    S+F I D + S +
Sbjct: 86  LWMGTFHSVFAKILRSEADKLGYPSNFTIYDSQDSLR 122


>gi|322375316|ref|ZP_08049829.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300]
 gi|321279579|gb|EFX56619.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300]
          Length = 763

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|307292736|ref|ZP_07572582.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
 gi|306880802|gb|EFN12018.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
          Length = 770

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
              ++           V A AG+GKT  L  R+  L+    A PS +L +T T  AA EM
Sbjct: 30  NTPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLIATRRAWPSEILAVTFTNKAAREM 89

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  +I                                          G   + T HA
Sbjct: 90  RERVGRMIGPAVE-------------------------------------GMPWLGTFHA 112

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               ++++      + S+F I D +   +L+++     + +  +D      +    +++ 
Sbjct: 113 IAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQ----LIQAEGIDEKRWPARQLAGLIDQ 168

Query: 199 SNDEDI 204
             ++ +
Sbjct: 169 WKNKGL 174


>gi|302380542|ref|ZP_07269007.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
 gi|302311485|gb|EFK93501.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
          Length = 967

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 36/164 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I  +++++L  S   ++  V+A AG+GKT ++ +R   +        +++C+T T  AA
Sbjct: 1   MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+++ +     + D                                    + V T
Sbjct: 61  DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           I +FC+ I+       +I   F I +++Q+ KL+ E     L +
Sbjct: 85  ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNEIFDKILEN 128


>gi|212693031|ref|ZP_03301159.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855]
 gi|212664398|gb|EEB24970.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855]
          Length = 1058

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91
               A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L  +   W  
Sbjct: 8   LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D     +    + + P +   + A   L  ++      +V+TI +F +++M+    E 
Sbjct: 68  DKDSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            + ++  I  E  + +++ +A  S +  +     +      Y +LE   +   + 
Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175


>gi|330718929|ref|ZP_08313529.1| ATP-dependent DNA helicase PcrA [Leuconostoc fallax KCTC 3537]
          Length = 745

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 42/184 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +            + A AGSGKT +L  R+  L+   N  P  +L +T T  AA EM
Sbjct: 11  NDKQAEAVQTTQGPLLIMAGAGSGKTRVLTHRIAHLIEDLNIFPWRILAITFTNKAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++                                       +    + V T HA
Sbjct: 71  KERIARLVDE-------------------------------------DVARDIWVSTFHA 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++   +  ++ +F I D    + L+    K  +  + LD N+   +A    +  
Sbjct: 94  LAVRILRRDGEKIGLSRNFTIVDTSAQRTLM----KRVINDLNLDTNQYDPRAILGAISN 149

Query: 199 SNDE 202
           + ++
Sbjct: 150 AKND 153


>gi|78049804|ref|YP_365979.1| DNA-dependent helicase II [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325926001|ref|ZP_08187367.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
 gi|78038234|emb|CAJ25979.1| DNA helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325543597|gb|EGD15014.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
          Length = 723

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71
            +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  +T T
Sbjct: 1   MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM HR    +   S                                       G+
Sbjct: 59  NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H     +++    +A +   F + D +   +L++   ++ 
Sbjct: 81  WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 125


>gi|103488489|ref|YP_618050.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
 gi|98978566|gb|ABF54717.1| ATP-dependent DNA helicase, Rep family [Sphingopyxis alaskensis
           RB2256]
          Length = 770

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 42/183 (22%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           ++           + A AG+GKT  L  R+  ++    A PS +L +T T  AA EM  R
Sbjct: 29  QRQAVLTTEGPVLMLAGAGTGKTAALTARLAHIIATRRAWPSEILAVTFTNKAAREMRER 88

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  +I                                          G   + T H+ C 
Sbjct: 89  IGRMIGDAVE-------------------------------------GMPWLGTFHSICA 111

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++      + S+F I D +   +++++     + +  LD      +    +++   +
Sbjct: 112 RMLRRHAELVGLQSNFTILDTDDQLRVLKQ----LIQAEGLDEKRWPARQLAGLIDKWKN 167

Query: 202 EDI 204
             +
Sbjct: 168 RGL 170


>gi|322391967|ref|ZP_08065431.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780]
 gi|321145193|gb|EFX40590.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780]
          Length = 763

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|320108905|ref|YP_004184495.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319927426|gb|ADV84501.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 1126

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 44/164 (26%)

Query: 14  IDLISQTKS------EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +  +  T+       ++L A     +  + A  G+GKT  LV RV  LL     P  +L 
Sbjct: 186 LRPLEWTQEAPLNELQELAAKHRGEAYLLEAGPGTGKTRTLVARVEGLLADGVDPRRILV 245

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT +  AA+EM  R+                                           E 
Sbjct: 246 LTFSNKAASEMGERIARKHR--------------------------------------EA 267

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
              + V T HAF   ++++F  E  +     + D  ++ +L+E+
Sbjct: 268 AAAMWVGTFHAFGLDLVRRFFTELGLPRDPRMMDRTEAVELLED 311


>gi|237709837|ref|ZP_04540318.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA]
 gi|229455930|gb|EEO61651.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA]
          Length = 1058

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91
               A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L  +   W  
Sbjct: 8   LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D     +    + + P +   + A   L  ++      +V+TI +F +++M+    E 
Sbjct: 68  DKDSNPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            + ++  I  E  + +++ +A  S +  +     +      Y +LE   +   + 
Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175


>gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
 gi|315442898|ref|YP_004075777.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1]
 gi|145214937|gb|ABP44341.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
 gi|315261201|gb|ADT97942.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1]
          Length = 780

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 41/158 (25%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           DL+     +Q  A         + A AGSGKT +L +R+  LL A +     +L +T T 
Sbjct: 17  DLLEGLNPQQRQAVLHEGTPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTN 76

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  RV+ ++                             +AR+           + 
Sbjct: 77  KAAAEMRERVVGLVG---------------------------PRARN-----------MW 98

Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169
           V T H+ C  I++ Q  L   + S+F+I D + S++L+
Sbjct: 99  VSTFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 136


>gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS]
 gi|126237075|gb|ABO00476.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS]
          Length = 784

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 42/160 (26%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E +D ++  + + +L         + A AGSGKT +L +R+  LL A +     +L +T 
Sbjct: 18  ELLDGLNPQQRQAVL--HEGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV+ +I                             +AR            
Sbjct: 76  TNKAAAEMRERVVGLIG---------------------------PRARS----------- 97

Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169
           + V T H+ C  I++ Q  L   + S+F+I D + S++L+
Sbjct: 98  MWVATFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 137


>gi|319938934|ref|ZP_08013298.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV]
 gi|319811984|gb|EFW08250.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV]
          Length = 760

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 44/192 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L      +            + A AGSGKT +L  R+  L+     +P  +L +T T  A
Sbjct: 5   LTGMNDRQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R   +  A                                            + 
Sbjct: 65  AREMKERAYTLNPATEDCL---------------------------------------IA 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  ++A   
Sbjct: 86  TFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKTLNLDPKKWNERAILG 141

Query: 195 ILEISNDEDIET 206
            +  + ++ I+ 
Sbjct: 142 TISNAKNDLIDE 153


>gi|288926530|ref|ZP_06420448.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17]
 gi|288336672|gb|EFC75040.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17]
          Length = 1116

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII-TAWSHLSDE 95
           A+AGSGKT  L    +RL++ N      +L +T T  A  EM  R+L  +   W      
Sbjct: 9   ASAGSGKTFTLATEYIRLVIDNPTAYRTILAVTFTNKATEEMKLRILSQLYGIWRADKAS 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  K   + P +    +A   L  ++      +V+TI  F +++++    E ++T+
Sbjct: 69  EGYYNKVKETSELPEREIRKRAGMALRNLIHNYNYFRVETIDTFFQSVLRNLARELDLTA 128

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +  I   +   +  ++A    +  +   N
Sbjct: 129 NLRIGLNDYQVE--QQAVDRLIEDLDAKN 155


>gi|60681671|ref|YP_211815.1| putative helicase [Bacteroides fragilis NCTC 9343]
 gi|60493105|emb|CAH07886.1| putative helicase [Bacteroides fragilis NCTC 9343]
          Length = 1057

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D    A + +I  +  +  D  +  A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
             ++ +  I  E  + +++ +A  S +  +    N  +     + ++    +D    +SD
Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179

Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240
            I +  R      +       RR++ + ++  
Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211


>gi|265763690|ref|ZP_06092258.1| ATP-dependent helicase [Bacteroides sp. 2_1_16]
 gi|263256298|gb|EEZ27644.1| ATP-dependent helicase [Bacteroides sp. 2_1_16]
          Length = 1057

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D    A + +I  +  +  D  +  A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
             ++ +  I  E  + +++ +A  S +  +    N  +     + ++    +D    +SD
Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179

Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240
            I +  R      +       RR++ + ++  
Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211


>gi|218281364|ref|ZP_03487842.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989]
 gi|218217456|gb|EEC90994.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989]
          Length = 725

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            +  +D +++   ++  A+       + A AGSGKT +L+ R++ L+      P+ +L +
Sbjct: 2   SNSILDTLNEN--QRTAATTINEHVRIIAGAGSGKTRVLMARIVYLVQDCGILPNRILAI 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+   + + + +                                    
Sbjct: 60  TFTNKAANEMKTRLTAQLGSMTSV------------------------------------ 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             +++ TIH+ C  ++++          FAI D E  K +++   K+ 
Sbjct: 84  --VRISTIHSLCVRMLREDADLIGYPKTFAIMDPEDQKAILKPIYKTL 129


>gi|325860059|ref|ZP_08173185.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325482344|gb|EGC85351.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 1111

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    + L++ N      +L +T T  A  EM  R+L  +   +H     
Sbjct: 27  ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHHLPGS 86

Query: 97  LSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +     ++     ++ + + A   L  +       +VQTI AF +++++    E N+T+
Sbjct: 87  QAYFDQVVRKTGFQETVIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 146

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  I   +   +   +A    + S+  +  EE+ K   + ++ + ++D
Sbjct: 147 NLRIDLNDDQVE--AQAVDEMIDSL--EEGEEVLKWIRDYIDKNIEDD 190


>gi|270292792|ref|ZP_06199003.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143]
 gi|270278771|gb|EFA24617.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143]
          Length = 763

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 46/200 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIETLI 208
           ++     +  + ++ I+ ++
Sbjct: 136 ERTILGTISNAKNDLIDDVV 155


>gi|53713424|ref|YP_099416.1| ATP-dependent helicase [Bacteroides fragilis YCH46]
 gi|52216289|dbj|BAD48882.1| ATP-dependent helicase [Bacteroides fragilis YCH46]
          Length = 1057

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D    A + +I  +  +  D  +  A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
             ++ +  I  E  + +++ +A  S +  +    N  +     + ++    +D    +SD
Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179

Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240
            I +  R      +       RR++ + ++  
Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211


>gi|27380604|ref|NP_772133.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27353769|dbj|BAC50758.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 685

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 36/168 (21%)

Query: 16  LISQTKSEQLLASDPT--------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
            +    +EQ  A +              V A AGSGKT+ L  RV  L++A A P  +L 
Sbjct: 4   YLDTLNAEQRRAVEHGVADGATVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRRILL 63

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T ++ AAAEM+ RV                  I +    + N + M  A          
Sbjct: 64  MTFSRRAAAEMAGRVER----------------IARKVLGENNAAIMRDALT-------- 99

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                  T H     +++++     +   F I D E S  L+   +  
Sbjct: 100 ----WAGTFHGIGARLLREYAERIGVDPAFTIHDREDSADLMNLVRHE 143


>gi|307703485|ref|ZP_07640427.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
 gi|307622892|gb|EFO01887.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
          Length = 739

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ I+ 
Sbjct: 136 ERSILGTISNAKNDLIDD 153


>gi|294666234|ref|ZP_06731487.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604007|gb|EFF47405.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 728

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L+ R+  L  +       +  
Sbjct: 2   DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR    +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSRW----------------------------------- 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + + T H     +++    +A +   F + D +   +L++   ++ 
Sbjct: 85  ---IWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 130


>gi|237725569|ref|ZP_04556050.1| ATP-dependent helicase [Bacteroides sp. D4]
 gi|229436256|gb|EEO46333.1| ATP-dependent helicase [Bacteroides dorei 5_1_36/D4]
          Length = 1058

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91
               A+AGSGKT  L    ++LL+ N      +L +T T  A  EM  R+L  +   W  
Sbjct: 8   LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D     +    + + P +   + A   L  ++      +V+TI +F +++M+    E 
Sbjct: 68  DKDSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            + ++  I  E  + +++ +A  S +  +     +      Y +LE   +   + 
Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSIIEKL-----DRQSPVLYWLLEYIEERIADD 175


>gi|163788705|ref|ZP_02183150.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1]
 gi|159875942|gb|EDP70001.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1]
          Length = 776

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            +SQ    QL  +        + A AGSGKT +L  R+  L+        +L LT T  A
Sbjct: 4   YLSQLNDAQLAPTLQKDGPMIIIAGAGSGKTRVLTYRIAYLMAQGVDAFNILALTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +I+      +                                     L + 
Sbjct: 64  AKEMKGRIADIVGDGEAKN-------------------------------------LWMG 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++         S+F I D + S+KL+    K  
Sbjct: 87  TFHSVFAKILRFEGHHLGFPSNFTIYDTQDSQKLLGSIIKEM 128


>gi|323526899|ref|YP_004229052.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323383901|gb|ADX55992.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 741

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 38/174 (21%)

Query: 11  SETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           S+    +++    Q  A +        P  +  V A AGSGKT+ L  RV  L++  A P
Sbjct: 41  SDAAAWLAKLNDAQREAVEYGADTPHAPPGALLVIAGAGSGKTNTLAHRVANLMVKGADP 100

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L LT ++ AA EM+ RV  I TA                               L  
Sbjct: 101 RRILLLTFSRRAALEMTRRVTRIATA------------------------------ALGT 130

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 G     T H+    +++++     +   F I D E S  L+   +   
Sbjct: 131 RAALAQGLSWAGTFHSVGARLLREYAELIGLAPAFTINDREDSADLMNLVRHEL 184


>gi|306825147|ref|ZP_07458489.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432583|gb|EFM35557.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 763

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|217968983|ref|YP_002354217.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506310|gb|ACK53321.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 745

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 57/175 (32%), Gaps = 38/175 (21%)

Query: 11  SETIDLISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAH 61
               D ++     Q  A                 V A AGSGKT  L  RV RL  A A 
Sbjct: 24  PPAADPLAALDPAQRAAVGHGIGADGRIDAGPLLVIAGAGSGKTGTLAHRVARLAAAGAD 83

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P+ +L LT ++ AA EM  RV  I+   +     +  AE+                    
Sbjct: 84  PARILLLTFSRRAADEMGRRVRRILAQAAADRPGLARAELQ------------------- 124

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                        T HA    +++       +   F+I D E S  L+   +   
Sbjct: 125 ----------WAGTFHAIGARLLRDHAGRIGLDPGFSIHDREDSADLMNLVRHEL 169


>gi|320536129|ref|ZP_08036182.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
           F0421]
 gi|320147046|gb|EFW38609.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
           F0421]
          Length = 664

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 54/157 (34%), Gaps = 38/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              ++   S       + A AGSGKT ++  R+  +L      S +L LT T  AA EM 
Sbjct: 8   NPEQRKAVSTIEGPVLIIAGAGSGKTRVITFRIAHMLDRGIPQSQILALTFTNKAAREME 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ E+                                             L V T HAF
Sbjct: 68  ERIKELTGK--------------------------------------KLQNLTVSTFHAF 89

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              I+++        S+F+I DE    +LI+E  K  
Sbjct: 90  GVKILREHIAALGWRSNFSIYDETDRNQLIKELGKEL 126


>gi|239617417|ref|YP_002940739.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1]
 gi|239506248|gb|ACR79735.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1]
          Length = 991

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 36/225 (16%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPSTL 65
           +  DL      E  +     R  ++SA+AG+GKT+ LV   +++               +
Sbjct: 5   KIKDLFGYFVEEGRIIVSVNRDIFISASAGTGKTYRLVSHYVQIFEEAFRHGEKLDVHNV 64

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           + +T T+ A+ EM  RV   I                KI+  +P      ++R +     
Sbjct: 65  VAITFTRKASKEMKERVHLRINE--------------KIENNEPGDWKNLRSRLIY---- 106

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                  + TIH+FCE I+++  +   I   F I    +   L  +  ++     +    
Sbjct: 107 -----AWISTIHSFCERILRESSIFLGIDPGFEILSGVRRVALEAQVVRTYFEQHL---- 157

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
           +EL+  F  I     D+  E     +   R  L++I  +     +
Sbjct: 158 DELEPLFDLI---GVDKTFELFKKALSGMRVNLRIISPYEEEPLK 199


>gi|206900332|ref|YP_002251111.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12]
 gi|206739435|gb|ACI18493.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12]
          Length = 625

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           +D + +   EQL A  +  R   + A AGSGKT ++  ++  L+  N A P  ++ LT T
Sbjct: 1   MDFLKELNKEQLEAVLEIERPVLILAGAGSGKTRVITYKIAYLIKNNIAKPENIVALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++ A                                     +    +
Sbjct: 61  NKAAEEMKKRINNMLGA-------------------------------------KDADKV 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H F   +++ F    +++ +F I DE   + LI++  K  
Sbjct: 84  WAGTFHGFGLYLLKNFGKYWSLSPYFVIYDENDQEDLIKDILKDL 128


>gi|219684438|ref|ZP_03539382.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr]
 gi|219672427|gb|EED29480.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr]
          Length = 658

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 65/232 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 9   SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 69  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 90

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175
           AF    +++         +F+I D+     L++E                          
Sbjct: 91  AFGLFFLKENYKLLGYKKNFSIYDDNDRISLLKEILLDEGLLNKKVSLNSLSNTISLLKN 150

Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIF 222
                + + + +  + K + E L + N  D + LI    +++SN + ++  +
Sbjct: 151 GILTLNDLKEEDISIFKLYEERLRLYNSFDFDDLILKPKELLSNNSDIRSKY 202


>gi|315609029|ref|ZP_07883999.1| ATP-dependent helicase [Prevotella buccae ATCC 33574]
 gi|315249233|gb|EFU29252.1| ATP-dependent helicase [Prevotella buccae ATCC 33574]
          Length = 1121

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII-TAWSHLSDE 95
           A+AGSGKT  L    +RL++ N      +L +T T  A  EM  R+L  +   W      
Sbjct: 14  ASAGSGKTFTLATEYIRLVIDNPTAYRTILAVTFTNKATEEMKLRILSQLYGIWRADKAS 73

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                  K   + P +    +A   L  ++      +V+TI  F +++++    E ++T+
Sbjct: 74  EGYYNKVKETSELPEREIRKRAGMALRNLIHNYNYFRVETIDTFFQSVLRNLARELDLTA 133

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +  I   +   +  ++A    +  +   N
Sbjct: 134 NLRIGLNDYQVE--QQAVDRLIEDLDAKN 160


>gi|188996189|ref|YP_001930440.1| UvrD/REP helicase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931256|gb|ACD65886.1| UvrD/REP helicase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 706

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 41/158 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++           V A AGSGKT ++  +++ L+       + +L +T T  AA EM
Sbjct: 11  NERQKEAVLHFDSPLLVLAGAGSGKTKVITHKIMYLVKHYGIPLNRILAITFTNKAAEEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + I                                              V T H+
Sbjct: 71  KERIEKAIGEKPQ----------------------------------------WVMTFHS 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           F    ++          +F I DEE SKKLI++  K  
Sbjct: 91  FAAKFLRMEAENIGYDRNFVIYDEEDSKKLIKKVLKDL 128


>gi|253565411|ref|ZP_04842866.1| ATP-dependent helicase [Bacteroides sp. 3_2_5]
 gi|251945690|gb|EES86097.1| ATP-dependent helicase [Bacteroides sp. 3_2_5]
          Length = 1057

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D    A + +I  +  +  D  +  A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
             ++ +  I  E  + +++ +A  S +  +    N  +     + ++    +D    +SD
Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179

Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240
            I +  R      +       RR++ + ++  
Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211


>gi|217979456|ref|YP_002363603.1| UvrD/REP helicase [Methylocella silvestris BL2]
 gi|217504832|gb|ACK52241.1| UvrD/REP helicase [Methylocella silvestris BL2]
          Length = 694

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            +     EQ  A +         P     + A AGSGKT+ L  RV  L++  AHP  +L
Sbjct: 10  YLETLNPEQRRAVEHGVCENDASPAAPLLIIAGAGSGKTNTLAHRVAHLIVNGAHPHRIL 69

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T ++ AAAEM+ RV  I           ++  +                         
Sbjct: 70  LMTFSRRAAAEMTRRVETIARKAMGDRAGQMTQALR------------------------ 105

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T HA    +++ +  +  +   F I D E S  L+   +   
Sbjct: 106 -----WSGTFHAIGARLLRDYADQIGLDPAFTIHDREDSADLMNLVRHEL 150


>gi|149193951|ref|ZP_01871049.1| HELICASE [Caminibacter mediatlanticus TB-2]
 gi|149135904|gb|EDM24382.1| HELICASE [Caminibacter mediatlanticus TB-2]
          Length = 905

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 29/190 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           + A+AGSGKT  L  R + LLL  A+P  ++ +T T  +A EM  R++  +       DE
Sbjct: 7   LKASAGSGKTFSLANRYISLLLKGANPKEIVAITFTNKSAREMEERIIRYLRDIKK--DE 64

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               ++ +  G    K  + KA  +L   L+    + + TI +F + I ++F        
Sbjct: 65  NFLKKLVENTGMS-EKEIIKKAPIILDKFLK--SDIHITTIDSFIQKIARKFSYYGGFDI 121

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
            F +  +                         L+  F + ++  ND++ E L++   +  
Sbjct: 122 DFDVKSDN------------------------LEAVFSKFVDSLNDKEFEELVNFSKNEE 157

Query: 216 TALKLIFFFF 225
             L  +   +
Sbjct: 158 NILSFLESLY 167


>gi|111115437|ref|YP_710055.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           afzelii PKo]
 gi|216263384|ref|ZP_03435379.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1]
 gi|110890711|gb|ABH01879.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           afzelii PKo]
 gi|215980228|gb|EEC21049.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1]
          Length = 659

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 9   SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 69  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 90

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 91  AFGLFFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLLNKKVSLNSLSNVISLFKN 150

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 151 GILTLNDLKEEDINIFRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 199


>gi|297588238|ref|ZP_06946881.1| ATP-dependent DNA helicase PcrA [Finegoldia magna ATCC 53516]
 gi|297573611|gb|EFH92332.1| ATP-dependent DNA helicase PcrA [Finegoldia magna ATCC 53516]
          Length = 724

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 42/197 (21%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           ++L +    ++    +      + A AGSGKT +L  +++  L         +L +T T 
Sbjct: 1   MNLDNLNDRQREAVENTDGPMLILAGAGSGKTKVLTTKIVYCLEKGLCSKYEILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  I+                                       E    + 
Sbjct: 61  KAAKEMKERVENILQ--------------------------------------EDVDSMW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C  I++          +F + D      L++E  K      +   N E+K   
Sbjct: 83  IGTFHAICSRILRVEIERIGFERNFTVYDRADQISLVKECLKDM---GVDPKNVEIKNEI 139

Query: 193 YEILEISNDEDIETLIS 209
             I  + N    E  I 
Sbjct: 140 NTISRLKNAGATEKNID 156


>gi|223983369|ref|ZP_03633555.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM
           12042]
 gi|223964541|gb|EEF68867.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM
           12042]
          Length = 1076

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 21/188 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75
           I  ++ +         +  VSA+AG+GKT +LV R++ R+L  +     ++ +T T+AAA
Sbjct: 3   IQWSEEQLKAIHTTDHNILVSASAGAGKTTVLVARLMKRMLEDHISIDRIVAMTFTEAAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+L+ +                K+Q    ++++    R  LI +        + T
Sbjct: 63  SEMKKRLLQSLND--------------KLQEPDLDEAEAQYCRQQLILL----QSAHIST 104

Query: 136 IHAFCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           IH+FC +I++       +       I D+    ++ ++A        M  + +       
Sbjct: 105 IHSFCLSIIKADYALIGLNPARIQHIFDDAALAQMKDQAFTQACRRQMAHDPDSFTTLLQ 164

Query: 194 EILEISND 201
                S D
Sbjct: 165 TFSSRSED 172


>gi|218130936|ref|ZP_03459740.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697]
 gi|217987280|gb|EEC53611.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697]
          Length = 1087

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +      
Sbjct: 4   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWK- 62

Query: 93  SDEILSAEITKIQGKKP-----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            D    A + +I+         +K    +A   L  +L      +V+TI +F +++M+  
Sbjct: 63  EDPASDAYLKRIKEDLASSPLSDKELRRRAGMALQYMLHDYSRFRVETIDSFFQSVMRNL 122

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
             E  ++ +  I  E  +  ++ +A  S +  +
Sbjct: 123 ARELELSPNLNI--ELNNTDVLSDAVDSMIEKL 153


>gi|148244458|ref|YP_001219152.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326285|dbj|BAF61428.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 717

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 46/211 (21%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
             SE  + ++  +  Q +  +  ++A + A AGSGKT +L+ R+  L+   + H   +L 
Sbjct: 2   NLSEITNGLNDKQC-QSVTLNNEKNALILAGAGSGKTKVLIHRIAYLITQKDIHIDAILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+ +++                                         
Sbjct: 61  VTFTNKAATEMCERLSKLLR--------------------------------------HP 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              +   T H+    +++    +A +T +F I D +   ++I    K+ +    +D ++ 
Sbjct: 83  ITSMWTGTFHSLAHRLLRTHYEQAQLTYNFQILDAQDQFRII----KNLMKENNIDESKF 138

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTAL 218
             K   + +    ++ I   + DI S+    
Sbjct: 139 PIKKVQQFINNQKNKGIH--LHDIDSSYNYF 167


>gi|307708772|ref|ZP_07645234.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261]
 gi|307615138|gb|EFN94349.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261]
          Length = 763

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ I+ 
Sbjct: 136 ERSILGTISNAKNDLIDD 153


>gi|331266303|ref|YP_004325933.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5]
 gi|326682975|emb|CBZ00592.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5]
          Length = 763

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|299145467|ref|ZP_07038535.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23]
 gi|298515958|gb|EFI39839.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23]
          Length = 1056

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D+   A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
             ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|281423244|ref|ZP_06254157.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302]
 gi|281402580|gb|EFB33411.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302]
          Length = 1075

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L  + ++LL+ N H     L +T T  A  EM  R+L  +   S  L + 
Sbjct: 9   ASAGSGKTFTLAVQYIKLLVENPHAYRHTLAVTFTNKATEEMKMRILSQLYGISRGLKES 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E  K Q      + ++ A + L  ++      +V+TI AF + +++    E  +T+
Sbjct: 69  KPYLESVKQQTSLDETTIINNASYALSELIHNYSYFRVETIDAFFQTVLRNLARELELTA 128

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  I   +Q  +  ++A    + ++  D +  L     + +  + D+D
Sbjct: 129 NLRIELNDQQVE--QQAVDQLIENL--DASSLLLSWILDYIHENMDDD 172


>gi|33863357|ref|NP_894917.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33640806|emb|CAE21261.1| similar to UvrD/REP helicase [Prochlorococcus marinus str. MIT
           9313]
          Length = 1274

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 12/170 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L   VLRLL    H  S LL +T T+AAAAE+  R+ + +       
Sbjct: 25  LLEASAGTGKTFALAHLVLRLLTEGGHQISELLVVTFTEAAAAELRSRIGQRLEHALEGL 84

Query: 94  DEI------LSAEITKIQGKKPNKSDMSKARHLLIT---ILETPGGLKVQTIHAFCEAIM 144
           + +         ++   Q  + N  D+S+    + +    LE+     + TIH FC   +
Sbjct: 85  EALDHGATDQPPDLVLKQWLQCNGHDLSQRHQWISSLLVALESLDLADITTIHGFCRRTL 144

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           ++  LE+       + D  Q   L++E         +L  + +  +    
Sbjct: 145 RRQALESGAVMDPRLDDSGQQ--LVQEVVHDYWQQQVLTLDAQHLRGLLH 192


>gi|90424770|ref|YP_533140.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90106784|gb|ABD88821.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           BisB18]
          Length = 866

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 44/198 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q     +  ++  +S+ +   D      V A AG+GKT +L  R+  +L +  A P  +L
Sbjct: 30  QAMPAYLAGLNPEQSDAVQTLD--GPVLVLAGAGTGKTRVLTSRIAHILSSGRARPGEIL 87

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  R+ +++                                        
Sbjct: 88  SVTFTNKAAREMKLRLGQMLGQAVE----------------------------------- 112

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G   + T H+    I++       +TS+F + D +   +L+++     LA+  +D+  
Sbjct: 113 --GMPWLGTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKR 166

Query: 187 ELKKAFYEILEISNDEDI 204
              +    +++   +  +
Sbjct: 167 WPARMLAGLIDGWKNRGL 184


>gi|313887981|ref|ZP_07821659.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845936|gb|EFR33319.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 975

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 46/203 (22%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++       +   + A AG+GKT +L  R + ++  N  P  +L +T TK AA EM  R+
Sbjct: 7   QKKAVYTLDKDLSLMAGAGTGKTRVLTSRFINIVKNNISPKHILAITFTKKAAQEMLGRI 66

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + +                                 +L  I      L V TIH+F   
Sbjct: 67  SKEL---------------------------------VLNNIEFEERDLNVMTIHSFAHE 93

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-----------ELKKA 191
           I+  +     I   F I +E +   L+EEA K +  +   +  +           E K  
Sbjct: 94  IVGNYSFILGINPRFKILEEGEGDYLLEEAVKESFNNFEDERFKNYLLDFKSSPFEEKNN 153

Query: 192 FYEILEISNDEDIETLISDIISN 214
           F  +    N+ +++    DI++ 
Sbjct: 154 FINLYRDFNNNNLD--FDDILNK 174


>gi|294012022|ref|YP_003545482.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
 gi|292675352|dbj|BAI96870.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
          Length = 1134

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 38/148 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +   A+    +  + A  G+GKT  L  RV  LL     P  +L LT +  AA EM+ R+
Sbjct: 201 QASAAAHRGEAFLLEAGPGTGKTQTLTARVEGLLAEGVDPRRILLLTFSNKAAGEMAERI 260

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
                  +                                        + + T HAF   
Sbjct: 261 GRKHKVAA--------------------------------------AAMWIGTFHAFGLD 282

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIE 170
           I+++F +E  +     + D  ++ +L+E
Sbjct: 283 IIRRFHIELGLPKDPRMMDRTEAVELLE 310


>gi|332168825|gb|AEE18080.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 795

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 37/157 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            ++++        +  V A AGSGKT +L  R+  L+        +L LT T  AA EM 
Sbjct: 30  NEAQRAPTLHKEGALIVIAGAGSGKTRVLTLRIAYLMSQGVDAFNILSLTFTNKAAREMK 89

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +I+ +    +                                     L + T H+ 
Sbjct: 90  KRISDIVGSSEAKN-------------------------------------LWMGTFHSI 112

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              I++    +    S+F I D + S++LI    K  
Sbjct: 113 FAKILRIEADKLGYPSNFTIYDTQDSQRLISAIIKEL 149


>gi|312867706|ref|ZP_07727912.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405]
 gi|311096769|gb|EFQ55007.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405]
          Length = 761

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R  ++  A                                        
Sbjct: 59  TFTNKAAREMKERAYQLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L S+ LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKSLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDE 153


>gi|254037294|ref|ZP_04871371.1| I DNA and RNA helicase [Escherichia sp. 1_1_43]
 gi|226840400|gb|EEH72402.1| I DNA and RNA helicase [Escherichia sp. 1_1_43]
          Length = 1131

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 39/186 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +   A+    +  + A  G+GKT  LV RV  LL     P  +L LT +  AA EM+
Sbjct: 193 NAEQDKAAAHRGPAFLLEAGPGTGKTQTLVGRVKGLLSDGVDPRKILLLTFSNKAAGEMA 252

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  + T                                      E    + + T H+F
Sbjct: 253 ERIARVDT--------------------------------------EAAAAIWIGTFHSF 274

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              ++++F  E N+     + D  ++ +L+E      L  +   N  +  +   +IL   
Sbjct: 275 GLDLIRRFHDELNLPLDPRLLDRTEAVELLEHEF-PVLDLVHYRNLYDPTRMIADILTGI 333

Query: 200 NDEDIE 205
           +    E
Sbjct: 334 SRAKDE 339


>gi|293369068|ref|ZP_06615665.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
 gi|292635836|gb|EFF54331.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
          Length = 1056

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D+   A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
             ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|160886083|ref|ZP_02067086.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483]
 gi|156108896|gb|EDO10641.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483]
          Length = 1056

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D+   A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
             ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|164687737|ref|ZP_02211765.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM
           16795]
 gi|164603511|gb|EDQ96976.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM
           16795]
          Length = 746

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 40/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           ETI++++  + E            + A AGSGKT +L  R+  L+         +L +T 
Sbjct: 4   ETIEMLNPAQRE--AVEQTEGPILILAGAGSGKTRVLTTRIGYLMKEKKVKAENILAITF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV E +                                       E    
Sbjct: 62  TNKAANEMRERVDETLND-------------------------------------EDTSA 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + + T H+ C  I+++   +      F I D      L+++  +  
Sbjct: 85  MWITTFHSCCVRILRKSINKIGYNRSFVIYDSSDQVTLVKDCLREL 130


>gi|284032499|ref|YP_003382430.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283811792|gb|ADB33631.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1239

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 32/208 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKA 73
           +L+     EQ+  +D   + +V A AGSGKTH LV RV  L+L +  P  T+  +T T+ 
Sbjct: 3   ELLDDAAREQIR-TDTDTTLFVEAGAGSGKTHALVDRVTTLVLRDEVPLRTIAAVTFTEK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A AE+  R+                                   R L    L+      +
Sbjct: 62  AGAELRDRLRVEFEKARKGPH-----------------------RALADEALDDLDSASI 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN---EELKK 190
            T+H+F + I+   P+EA +     + DE  S    EE + S L   +LD++   E L  
Sbjct: 99  GTLHSFAQQILLAHPIEAGLPPLIDVLDEVGSSVAFEE-RWSELQQQLLDDDAIAEPLLL 157

Query: 191 AFYEILEISNDEDIETLIS---DIISNR 215
           A    +E+ +   +  L     D+I  R
Sbjct: 158 AMAVGVELKHLRSLARLFGNDWDLIEER 185


>gi|320526748|ref|ZP_08027938.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei
           F0204]
 gi|320132716|gb|EFW25256.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei
           F0204]
          Length = 1107

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 20/192 (10%)

Query: 18  SQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKA 73
           +Q  +EQ +A + +     VSA+AG+GKT +LV R+++  + +      S +L LT T+A
Sbjct: 7   NQLSAEQSVACNSSGMGIVVSASAGAGKTKVLVSRLVKRCIEDNPRVPLSRILALTFTEA 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+EM  RV + +     L+++    +   IQ               +   +       +
Sbjct: 67  AASEMKKRVAQELNEIKQLAEKEEPVDQELIQ--------------YIDDQIIALASANI 112

Query: 134 QTIHAFCEAIMQQFPLEANITSHFA--IADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            TI +FC +I++++     +       I    Q++ +  +A    L      + +E    
Sbjct: 113 TTIDSFCLSIIKKYYNIIGLDPATTENILSSGQNQNIQRDAFMRALEYAYQISPQETIML 172

Query: 192 FYEILEISNDED 203
                  +++ D
Sbjct: 173 ASYFSSRADEYD 184


>gi|306831468|ref|ZP_07464626.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426253|gb|EFM29367.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 771

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  + E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDKQVEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P  +D               
Sbjct: 59  TFTNKAAREMRER----------------------AMALNPATADTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ ++ 
Sbjct: 136 ERAILGTISNAKNDLLDE 153


>gi|260170417|ref|ZP_05756829.1| ATP-dependent helicase [Bacteroides sp. D2]
 gi|315918773|ref|ZP_07915013.1| ATP-dependent helicase [Bacteroides sp. D2]
 gi|313692648|gb|EFS29483.1| ATP-dependent helicase [Bacteroides sp. D2]
          Length = 1056

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D+   A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
             ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|83816263|ref|YP_444681.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber DSM 13855]
 gi|83757657|gb|ABC45770.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber DSM 13855]
          Length = 786

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 41/164 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
             +D ++  + E    +       + A  GSGKT  L  R+  LL A  A P  +L LT 
Sbjct: 24  RILDGLNDKQRE--AVTTTEGPVMIIAGPGSGKTRALTHRIAYLLAAGKAQPRDILALTF 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++   +                                       G
Sbjct: 82  TNKAANEMQERVEALVGDDAR--------------------------------------G 103

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           + V T H+    +++    +   +  F+I D   SK+LI +  K
Sbjct: 104 MWVGTFHSSFARLLRMEGDKIGYSEDFSIYDTADSKRLIRQQMK 147


>gi|268316024|ref|YP_003289743.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333558|gb|ACY47355.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 681

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 41/201 (20%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           T+D   Q   +Q  + +       V A AG+GKT  LV RV  L+     P  ++ LT T
Sbjct: 19  TVDYAGQLNPQQYAVVTAGGGPILVVAGAGTGKTRTLVYRVAYLVETGTPPEEIVLLTFT 78

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM  R           +  +L     ++QG                         
Sbjct: 79  RRAAREMLAR-----------AAALLDGRCERVQG------------------------- 102

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEELK 189
              T HAFC  +++++       S+F + D   +  +I+  + +     S      ++  
Sbjct: 103 --GTFHAFCLGLLRRYAGRLGYPSNFTVLDASDAADVIDLLRTAHGLHRSGRRFPRKQTI 160

Query: 190 KAFYEILEISNDEDIETLISD 210
           +A +       D D+ET++  
Sbjct: 161 QAIFSAAASHPDADLETILEA 181


>gi|149012920|ref|ZP_01833833.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763209|gb|EDK70149.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP19-BS75]
          Length = 218

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|29346464|ref|NP_809967.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338360|gb|AAO76161.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1057

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +      
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGIQIG 64

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             +  +      +  K  + ++ +A  + L  +L      +V+TI +F +++M+    E 
Sbjct: 65  DKDSEAYLNRIKEETKKTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 125 ELSPNLNI--ELNNAEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|117926757|ref|YP_867374.1| ATP-dependent DNA helicase Rep [Magnetococcus sp. MC-1]
 gi|117610513|gb|ABK45968.1| ATP-dependent DNA helicase, Rep family [Magnetococcus sp. MC-1]
          Length = 673

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 35/162 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L      ++   +       V A AGSGKT +L +R+  ++    A P  +L +T T  A
Sbjct: 6   LHHLNAPQRQAVTTLDGPLMVLAGAGSGKTRVLTRRLAWIIQQQQASPEEVLAVTFTNKA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM +RV  ++                                   +          + 
Sbjct: 66  AKEMRNRVQALLG----------------------------------LDAPAQAHRFWIG 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H     +++Q+         F I D    ++L +   +  
Sbjct: 92  TFHGMSARMLRQYADRLGFERDFTILDSSDQERLFKRLCEEL 133


>gi|317476247|ref|ZP_07935498.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907658|gb|EFV29361.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 1087

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 7/152 (4%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW--- 89
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +      
Sbjct: 4   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKE 63

Query: 90  SHLSDEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            H SD  L      +     +  ++  +A   L  +L      +V+TI +F +++M+   
Sbjct: 64  DHASDAYLKRIKEDLASSPLSDKELRRRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLA 123

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            E  ++ +  I  E  +  ++ +A  S +  +
Sbjct: 124 RELELSPNLNI--ELNNTDVLSDAVDSMIEKL 153


>gi|224023774|ref|ZP_03642140.1| hypothetical protein BACCOPRO_00490 [Bacteroides coprophilus DSM
           18228]
 gi|224016996|gb|EEF75008.1| hypothetical protein BACCOPRO_00490 [Bacteroides coprophilus DSM
           18228]
          Length = 360

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 11/176 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L  + ++LL+ +      +L +T T  A  EM  R+L  +   +  
Sbjct: 61  LVYKASAGSGKTFTLAVQYIKLLIEDTSAYRKILAVTFTNKATTEMKKRILYQLYGIATA 120

Query: 93  SDEILS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           S E      EI K  GK  ++   + AR  L  I+      +++TI +F +++M+    E
Sbjct: 121 SPESEGYLKEILKTSGKSVDEIRQA-ARTALKNIIHDYSRFRIETIDSFFQSVMRNLSRE 179

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
             + ++  I  E  + +++ +A  S +  +     +      Y +LE   +   + 
Sbjct: 180 LELGANLNI--ELNNTEVLSDAVDSMIEKL-----DRRSPVLYWLLEYIEERIADD 228


>gi|317502900|ref|ZP_07960997.1| ATP-dependent helicase [Prevotella salivae DSM 15606]
 gi|315665983|gb|EFV05553.1| ATP-dependent helicase [Prevotella salivae DSM 15606]
          Length = 1075

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 6/188 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L  + + LL+ N       L +T T  A  EM  R+L  +   S  L++ 
Sbjct: 9   ASAGSGKTFTLAVQYITLLVENPQAYRHTLAVTFTNKATEEMKMRILSQLYGISVGLNES 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E  K       K+ ++ A + L  ++      +V+TI AF + +++    E  +T+
Sbjct: 69  KPYLECVKQLSGLDEKTIIANAGYALRELIHHYSYFRVETIDAFFQTVLRNLARELELTA 128

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS-N 214
           +  I   ++  +  ++A    +  +  D++  L      I E  +D+    +I+ I    
Sbjct: 129 NLRIELNDEQVE--QQAVDQLIEDLN-DSSLLLSWILDYIQENIDDDKSWNVIAQIKQFG 185

Query: 215 RTALKLIF 222
           R  LK  +
Sbjct: 186 RNILKDYY 193


>gi|312621145|ref|YP_004022758.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201612|gb|ADQ44939.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 756

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 9/211 (4%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAA 75
           S     Q          ++ A AG+GKT +LV+ +++ L  N  A  S  + +T T  A 
Sbjct: 13  SPLTETQQNILKVNFPFYLKAGAGTGKTELLVELIIKCLNENPKASISNFVVITFTNKAT 72

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +E+  R++E +     L+ +      +       N++ M++        ++    L V T
Sbjct: 73  SEVKRRLVERLYFDYSLNHK---KLSSLSSLLADNRNIMNRQEDEKRKFVDLTSMLNVYT 129

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLD--NNEELKKAF 192
           IH FCE I++Q+     I+  F I     +  ++I +A  +   +  L+   +  L +  
Sbjct: 130 IHGFCEIILRQYGYLIGISPKFEIKSVTWKLNEIIRKAIDNYAENEFLNVLPSYRLHQLV 189

Query: 193 YEILEISNDEDIETLISDIISN-RTALKLIF 222
             + E  +++  E    DI +  R   +  F
Sbjct: 190 RTLYEECDNKGDEITEKDIKNKFRKNQEQYF 220


>gi|167762884|ref|ZP_02435011.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC
           43183]
 gi|167699224|gb|EDS15803.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC
           43183]
          Length = 1151

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 11/156 (7%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +      
Sbjct: 28  LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKE 87

Query: 93  SDEILS--AEITKIQGKKP------NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                +    I +   KKP      ++    +A   L  +L      +V+TI +F +++M
Sbjct: 88  DPASDAYLKRIKEDLAKKPETASLSDRELRQRAGMALQYMLHDYSRFRVETIDSFFQSVM 147

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           +    E  ++ +  I  E  + +++ +A  S +  +
Sbjct: 148 RNLARELELSPNLNI--ELNNAEVLSDAVDSMIEKL 181


>gi|115524150|ref|YP_781061.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115518097|gb|ABJ06081.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           BisA53]
          Length = 846

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L +  A P  +L +T T  
Sbjct: 38  YLSGLNPEQSEAVETLEGPVLVLAGAGTGKTRVLTSRIAHILSSGRARPGEILSVTFTNK 97

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +++                                          G   +
Sbjct: 98  AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 120

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       + S+F + D +   +L+++     LA+  +D+     +   
Sbjct: 121 GTFHSIGGRILRYHAELVQLKSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 176

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 177 GLIDGWKNRGL 187


>gi|292670877|ref|ZP_06604303.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541]
 gi|292647498|gb|EFF65470.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541]
          Length = 747

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 64/194 (32%), Gaps = 44/194 (22%)

Query: 14  IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL       +Q   +       + A AGSGKT +L  R+  LL     P  +L +T T 
Sbjct: 1   MDLFQGLNEPQQRAVACLEGPLLIVAGAGSGKTRVLTFRIANLLEHAVPPYRILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +I                                       ++   + 
Sbjct: 61  KAAREMRDRVDTLIG--------------------------------------DSARDVW 82

Query: 133 VQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           + T H+FC   ++           +F I D   +K LI E     L  + +D       A
Sbjct: 83  LSTFHSFCARFLRMEIEHLGTYAKNFVIYDASDTKGLIREC----LKELNIDEKHTAPGA 138

Query: 192 FYEILEISNDEDIE 205
               +  + +  ++
Sbjct: 139 VQSHISDAKNRLLD 152


>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
 gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
          Length = 870

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +I+  + +Q + ++   +  + A+AG+GKT+ L +RV  ++      PS +LC+T T  A
Sbjct: 1   MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAKRVTSIIKNGNSKPSEILCITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EMS RV++I+   +                                        + ++
Sbjct: 61  CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK---- 189
           T H+FC  +++ +     +I S F I DE+  +++I +       S ++  N +++    
Sbjct: 83  TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQRVID 142

Query: 190 -----KAFYEILEISNDEDIETLISDIISNRT 216
                +A  E LE    ++ +T+I +I   R 
Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174


>gi|237720843|ref|ZP_04551324.1| ATP-dependent helicase [Bacteroides sp. 2_2_4]
 gi|229449678|gb|EEO55469.1| ATP-dependent helicase [Bacteroides sp. 2_2_4]
          Length = 1056

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++L++ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLIILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D+   A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
             ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|229496641|ref|ZP_04390355.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC
           35406]
 gi|229316538|gb|EEN82457.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC
           35406]
          Length = 809

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 56/165 (33%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID   +    Q  A       A V A AGSGKT +L  ++  LL     P  L+ LT T
Sbjct: 1   MIDYEKELNPAQAEAVLYDDGPALVIAGAGSGKTRVLTYKLAHLLEEGYDPHKLMALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++ +                                          +
Sbjct: 61  NKAAREMLSRVESMVGSRDTF-------------------------------------RM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           K+ T H+     ++ +      T +F+I D   SK L++   K  
Sbjct: 84  KLGTFHSVFSRYLRIYAPLLGFTPNFSIYDTSDSKSLVKRIVKDM 128


>gi|126695666|ref|YP_001090552.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301]
 gi|126542709|gb|ABO16951.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301]
          Length = 802

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 23  EQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           +QL A         V A AGSGKT  L  R+  L+  N   P  +L +T T  AA EM  
Sbjct: 15  QQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKG 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+  ++      +         K   +   ++++ + R            L + T H+  
Sbjct: 75  RLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHQER---------LQNLWIGTFHSLF 125

Query: 141 EAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKSTLA 178
             +++ + +E             F+I DE  S+ L++E     ++
Sbjct: 126 SRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQDMS 169


>gi|329955053|ref|ZP_08296034.1| UvrD/REP helicase [Bacteroides clarus YIT 12056]
 gi|328526343|gb|EGF53358.1| UvrD/REP helicase [Bacteroides clarus YIT 12056]
          Length = 1128

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +      
Sbjct: 4   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWK- 62

Query: 93  SDEILSAEITKIQGKKP-----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           +D    A + +I+         +K    +A   L  +L      +V+TI +F +++M+  
Sbjct: 63  ADPASDAYLKRIKEDLNSSSLSDKELRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRNL 122

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
             E  ++ +  I  E  +  ++ +A  S +  +
Sbjct: 123 ARELELSPNLNI--ELNNADVLSDAVDSMIEKL 153


>gi|307709461|ref|ZP_07645918.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564]
 gi|307619775|gb|EFN98894.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564]
          Length = 763

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ I+ 
Sbjct: 136 ERSILGTISNAKNDLIDD 153


>gi|294674328|ref|YP_003574944.1| UvrD/REP family ATP-dependent DNA helicase [Prevotella ruminicola
           23]
 gi|294472390|gb|ADE81779.1| ATP-dependent DNA helicase, UvrD/REP family [Prevotella ruminicola
           23]
          Length = 1075

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 7/214 (3%)

Query: 27  ASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE 84
            ++  +S  V  A+AGSGKT  L    +RLL+ N      +L +T T  A  EM  R+L 
Sbjct: 2   VNETQKSLTVYKASAGSGKTFTLATEYIRLLVENPQSYRNILAVTFTNKATEEMKMRILS 61

Query: 85  II-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            +   W  L +     +  + +     +    +A   L  +       +V+TI  F +++
Sbjct: 62  QLYGIWKQLPESDNYLQNIQTKTGLKPEVISERAGIALNNLTHNYNYFRVETIDTFFQSV 121

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++    E ++T++  I   +     +EE     L   +   +  L+     I+E  +D+ 
Sbjct: 122 LRNMARELDLTTNLRIGLNDYQ---VEELAVDQLIEDLTTTDVMLQWILKYIMENISDDK 178

Query: 204 IETLISDIIS-NRTALKLIFFFFSYLWRRKIIEK 236
              +I+ I    +   K  +   S    +K+ E+
Sbjct: 179 SWNVIAQIKKFGQNIFKDYYKEVSLTLEQKMGEE 212


>gi|289705135|ref|ZP_06501539.1| UvrD/REP helicase [Micrococcus luteus SK58]
 gi|289558163|gb|EFD51450.1| UvrD/REP helicase [Micrococcus luteus SK58]
          Length = 1176

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 23/172 (13%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           +S ++ +  + L   T+ +  + + P     V A AGSGKT  +  RV+ L+      P 
Sbjct: 22  HSPEDIAARLRLPPPTQEQAEVVTAPLTPRLVLAGAGSGKTATMADRVVWLVANGLVRPD 81

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T+ AA E++ R+   + A      E        I G      D+         
Sbjct: 82  EVLGVTFTRKAAGELAERINGRVDALLRSGLE--------IPGFDGEPEDL--------- 124

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                G   V T H++  A+++   L   +     +  +  + +L+    +S
Sbjct: 125 -----GRASVSTYHSYAGALVRDHGLRIGVEPEARLLGDADAHRLMGAVVRS 171


>gi|325062285|gb|ADY65975.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
          Length = 688

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q  A +               + A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 5   YLDKLNEQQRKAVEHGVGLSGGHTAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRIL 64

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T ++ AA+EMS RV  I       +   L+  +                         
Sbjct: 65  LMTFSRRAASEMSRRVERICKQVIGANAGALTDAM------------------------- 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     +++ +  +  +   F I D E S  L+  A+   
Sbjct: 100 ----AWSGTFHGIGARLLRIYAEQIGLDVDFTIHDREDSADLMNLARHEL 145


>gi|298387758|ref|ZP_06997309.1| UvrD/REP helicase domain-containing protein [Bacteroides sp.
           1_1_14]
 gi|298259614|gb|EFI02487.1| UvrD/REP helicase domain-containing protein [Bacteroides sp.
           1_1_14]
          Length = 1057

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +      
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGIQIG 64

Query: 93  S-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D        K + K+  +     A   L  +L      +V+TI +F +++M+    E 
Sbjct: 65  DKDSEAYLNRIKEETKRTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 125 ELSPNLNI--ELNNAEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|222055070|ref|YP_002537432.1| UvrD/REP helicase [Geobacter sp. FRC-32]
 gi|221564359|gb|ACM20331.1| UvrD/REP helicase [Geobacter sp. FRC-32]
          Length = 678

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +DL +    +         +  V A AGSGKT ++  R+  LLL     P+ +L +T T
Sbjct: 1   MLDLFNLNPQQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLLLDKKVPPANILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++   +                                       GL
Sbjct: 61  NKAAKEMRERVDGLVGRAACK-------------------------------------GL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    I+++         +F+I        LI++  +  
Sbjct: 84  IISTFHSLGVRILRRDIERLGYKKNFSIYSTTDQIGLIKQIMREV 128


>gi|222153135|ref|YP_002562312.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
 gi|222113948|emb|CAR42197.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 755

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 50/203 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++    +            + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMND--RQAEAVETTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKCVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                      +      +  +              
Sbjct: 59  TFTNKAAREMRER---------------------ALLLNPATQETL-------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIETLISDI 211
           +++    +  + ++    L+ ++
Sbjct: 136 ERSILGTISNAKND----LLDEM 154


>gi|322376782|ref|ZP_08051275.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334]
 gi|321282589|gb|EFX59596.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334]
          Length = 763

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ +++ ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNERQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +                       P+  D               
Sbjct: 59  TFTNKAAREMKERAYNL----------------------NPSTQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           +++    +  + ++ I+ 
Sbjct: 136 ERSILGTISNAKNDLIDD 153


>gi|253568133|ref|ZP_04845544.1| ATP-dependent helicase [Bacteroides sp. 1_1_6]
 gi|251842206|gb|EES70286.1| ATP-dependent helicase [Bacteroides sp. 1_1_6]
          Length = 1057

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +      
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLVLNPRAYRQILAVTFTNKATAEMKERILSQLYGIQIG 64

Query: 93  S-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D        K + K+  +     A   L  +L      +V+TI +F +++M+    E 
Sbjct: 65  DKDSEAYLNRIKEETKRTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 125 ELSPNLNI--ELNNAEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|83719895|ref|YP_443754.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264]
 gi|83653720|gb|ABC37783.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264]
          Length = 848

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 157 GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 214

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 215 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 249

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 250 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 286


>gi|34540779|ref|NP_905258.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Porphyromonas
           gingivalis W83]
 gi|34397093|gb|AAQ66157.1| ATP-dependent DNA helicase UvrD/PcrA/Rep Family [Porphyromonas
           gingivalis W83]
          Length = 765

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D +S     Q  A       A V A AGSGKT +LV ++L L+ +   P+ L+ LT T  
Sbjct: 4   DYLSSLNDSQKAAVLYNDGPALVIAGAGSGKTRVLVYKLLHLIHSGYDPARLMALTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV   I   +                                        +++
Sbjct: 64  AAKEMKERVASEIGPAA--------------------------------------YRIQM 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+++       T  F+I D   +K L+    K  
Sbjct: 86  GTFHSVFSRILRENATHLGYTRDFSIYDTNDTKSLLRHVMKRM 128


>gi|85708952|ref|ZP_01040018.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85690486|gb|EAQ30489.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 771

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
              ++           + A AG+GKT  L  R+  L+    A PS +LC+T T  AA EM
Sbjct: 26  NPPQREAVLTTEGPVLMLAGAGTGKTAALTSRLAHLVATRRAWPSQILCVTFTNKAAREM 85

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +   +                                          + T H+
Sbjct: 86  RERVAGHLGPGAEGIP-------------------------------------WLGTFHS 108

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++++      +  ++ I D +   +L+++     +    +D      +    +++ 
Sbjct: 109 ICAKMLRRHAELVGLEQNYTIIDTDDQLRLLKQ----LINDNGVDEKRWPARQLAGLIDR 164

Query: 199 SNDEDI 204
             +  +
Sbjct: 165 WKNRGL 170


>gi|225856731|ref|YP_002738242.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031]
 gi|225724965|gb|ACO20817.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031]
          Length = 763

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A  +                                     
Sbjct: 59  TFTNKAAREMKERAYSLNPATQNCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|291295632|ref|YP_003507030.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279]
 gi|290470591|gb|ADD28010.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279]
          Length = 833

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 31/161 (19%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
              EQ  A +      V A AG+GKTH++  R L L+      P  ++ +T T+ AA E+
Sbjct: 3   LNPEQRAAVEHDGPVAVEAGAGTGKTHLMAHRYLWLVEHKGFSPLEIVAVTFTEKAAREL 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                      P +    +A               + T+H+
Sbjct: 63  RARVRRVLQGQV-----------------APERVYEVEA-------------APIGTLHS 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               I Q++P EA +   F I DE +S   + E     L  
Sbjct: 93  LAARICQEYPEEAGVHPAFRILDEVESALWLSEHLDEALEE 133


>gi|148989130|ref|ZP_01820520.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73]
 gi|147925353|gb|EDK76431.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73]
          Length = 763

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDSGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|187924915|ref|YP_001896557.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187716109|gb|ACD17333.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 720

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 59/168 (35%), Gaps = 38/168 (22%)

Query: 17  ISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           +++    Q  A D        P  +  V A AGSGKT+ L  RV  L++  A P  +L L
Sbjct: 28  LAKLNDAQREAVDYGADTPTAPPGALLVIAGAGSGKTNTLAHRVANLVVKGADPRRILLL 87

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AA EM+ RV  I  A                               L        
Sbjct: 88  TFSRRAALEMTRRVTRIAGA------------------------------ALGSRAALAQ 117

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           G     T H+    +++++     +   F I D E S  L+   +   
Sbjct: 118 GLTWSGTFHSVGARLLREYADLIGLAPAFTINDREDSADLMNLVRHEL 165


>gi|76787976|ref|YP_329845.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909]
 gi|77407064|ref|ZP_00784070.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B]
 gi|77413012|ref|ZP_00789214.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515]
 gi|76563033|gb|ABA45617.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909]
 gi|77160910|gb|EAO72019.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515]
 gi|77174333|gb|EAO77196.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B]
          Length = 759

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  I  ++  ++E +  +D      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T H+ C  I+++         +F I D  + + L++   K  
Sbjct: 84  ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127


>gi|207724952|ref|YP_002255349.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           MolK2]
 gi|206590179|emb|CAQ37140.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           MolK2]
          Length = 710

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 60/171 (35%), Gaps = 31/171 (18%)

Query: 15  DLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D ++Q   +Q  A +          T    V A AGSGKT  L  RV  L+   A P  +
Sbjct: 15  DYLAQLNDQQRQAVEFGVSGADAAETGPLLVLAGAGSGKTQTLGWRVAHLVAHGADPQRI 74

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT ++ AA+E+S R   ++      +    SA  T  Q   P                
Sbjct: 75  LLLTFSRRAASELSSRAGHLLARAMQGNTGTRSAAGTTYQTALP---------------- 118

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    T H     +++++     +   F I D   S  L+   +   
Sbjct: 119 ------WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDSADLLNVVRHEL 163


>gi|168483162|ref|ZP_02708114.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043466|gb|EDT51512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC1873-00]
          Length = 763

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++   S  + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GSLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|83643128|ref|YP_431563.1| exodeoxyribonuclease V subunit beta [Hahella chejuensis KCTC 2396]
 gi|83631171|gb|ABC27138.1| exodeoxyribonuclease V, beta subunit [Hahella chejuensis KCTC 2396]
          Length = 1181

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 3/151 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +    LRLLL        +L +T T+AA  E+  R+ + I       
Sbjct: 16  LIEASAGTGKTYTITTLYLRLLLERQLDVRQILVVTFTRAATEELRTRIRQRIREVMQTL 75

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 +I +      +      A  LL   L       + TIH FC+  +Q    E+ +
Sbjct: 76  QAPPETDIAEWLQPWRDPERNGDALALLQQALLNMDEASIFTIHGFCQRALQDNAFESGL 135

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
              F +  +E    L+++A + T   +   +
Sbjct: 136 --LFDLRLQEDLGPLLQQAAEDTWRKLFYPD 164


>gi|212710202|ref|ZP_03318330.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM
           30120]
 gi|212687201|gb|EEB46729.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM
           30120]
          Length = 675

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q           V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEYVDGPCLVLAGAGSGKTRVITNKIAHLIRHCGYQPRQIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR L+           + T H 
Sbjct: 64  KERVGQTLGK--------------------------KEARGLI-----------ISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      I ++F++ D++    L++E     L     ++ + L++    I   
Sbjct: 87  LGLEIIKREYKALGIKANFSLFDDQDQMALLKELTFDLLE----EDKDLLQQLISAISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|307718485|ref|YP_003874017.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM
           6192]
 gi|306532210|gb|ADN01744.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM
           6192]
          Length = 665

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 73/219 (33%), Gaps = 55/219 (25%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  ++    Q  A         + A AGSGKT ++  R+  +L ++     +L LT T 
Sbjct: 3   IDYRAELNPAQYEAVTTIDGPLLIIAGAGSGKTRVITYRIAYMLDSHIPQKAILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +                                             L 
Sbjct: 63  KAAREMWERVRTLTGK--------------------------------------KLTNLT 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H+F   I+++          F+I D +  K LI++     +  + L+ +       
Sbjct: 85  VGTFHSFGAQILREHIHLLGYRPTFSIYDTQDQKALIKQC----IQEVGLNPD------- 133

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
                ++N   I TLIS I + R         +  ++  
Sbjct: 134 -----LANISAIRTLISAIKTGRAGWNAENEVYRPVYEE 167


>gi|295697356|ref|YP_003590594.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912]
 gi|295412958|gb|ADG07450.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912]
          Length = 755

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 45/191 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            +  ++  + E +  ++      + A AGSGKT +L  RV  L+    A P  +L +T T
Sbjct: 14  LLAGLNDAQREAVRQTE--GPLLILAGAGSGKTRVLTHRVAYLVATRKAPPWGILAITFT 71

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++   +                                        +
Sbjct: 72  NKAAREMRERIGRLVGPEAE--------------------------------------EI 93

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H++C  ++++       T  F+I D          A K  L  + LD  +   + 
Sbjct: 94  WVSTFHSYCVRVLRRHIEPLGFTRSFSILDASDQTT----AVKQVLGEMNLDTKKFDPRR 149

Query: 192 FYEILEISNDE 202
               +    +E
Sbjct: 150 MAGAISALKNE 160


>gi|189501505|ref|YP_001957222.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189496946|gb|ACE05493.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2]
          Length = 757

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +D++++ + +   A +      + A AG+GKT +L  R+  L+      P  +L LT T 
Sbjct: 5   LDMLNEQQRQ--AAVNTEGPCMIIAGAGAGKTKVLTTRIAYLIQEKKVDPFKILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ ++I   +                                        + 
Sbjct: 63  KAANEMKKRIEQVIGPAAK--------------------------------------NVW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    +++    +    S F+I D   SK L++   K  
Sbjct: 85  LGTFHSCFAKLLRIEADKIGYPSSFSIYDTTDSKSLLKSIIKEM 128


>gi|281358424|ref|ZP_06244905.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548]
 gi|281315047|gb|EFA99079.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548]
          Length = 679

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 37/157 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +   A        V A AG+GKT ++  R+  +L     P  +L +T T  AA EM 
Sbjct: 11  NPEQASAAGTVNGPVLVLAGAGTGKTRVITFRIAYMLACGIPPQMILGMTFTNKAAREMR 70

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ +++                        +  +++   L              T H+F
Sbjct: 71  ERLAQLV------------------------QPQIARKVTL-------------GTFHSF 93

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           C  I+++   +      F IADE   + ++++A    
Sbjct: 94  CIKILRRDIAKLGYLPSFTIADESDQQGVLKQAAGQL 130


>gi|126697900|ref|YP_001086797.1| ATP-dependent DNA helicase [Clostridium difficile 630]
 gi|254973999|ref|ZP_05270471.1| ATP-dependent DNA helicase [Clostridium difficile QCD-66c26]
 gi|255099501|ref|ZP_05328478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-63q42]
 gi|255305356|ref|ZP_05349528.1| ATP-dependent DNA helicase [Clostridium difficile ATCC 43255]
 gi|255313045|ref|ZP_05354628.1| ATP-dependent DNA helicase [Clostridium difficile QCD-76w55]
 gi|255515802|ref|ZP_05383478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-97b34]
 gi|255654387|ref|ZP_05399796.1| ATP-dependent DNA helicase [Clostridium difficile QCD-23m63]
 gi|306519010|ref|ZP_07405357.1| ATP-dependent DNA helicase [Clostridium difficile QCD-32g58]
 gi|115249337|emb|CAJ67150.1| DNA helicase, UvrD/REP type [Clostridium difficile]
          Length = 754

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 43/190 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ++L +   +++           + A AGSGKT +L  R+  L+         +L +T T 
Sbjct: 1   MNLDTLNPAQREAVEKTEGPVLILAGAGSGKTKVLTTRIAYLIEDKGVQAPNILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV + I                      P   D                 + 
Sbjct: 61  KAANEMRERVEQNIG---------------------PETKD-----------------MW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I+++   +      F I D      L+++     L  + L +     KA 
Sbjct: 83  ISTFHSCCVRILRKDINKIGYNRSFVIYDSADQVTLVKDC----LKELNLSDKVFEPKAV 138

Query: 193 YEILEISNDE 202
              +  + D+
Sbjct: 139 ISAISGAKDK 148


>gi|77409591|ref|ZP_00786269.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1]
 gi|77171802|gb|EAO74993.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1]
          Length = 759

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  I  ++  ++E +  +D      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T H+ C  I+++         +F I D  + + L++   K  
Sbjct: 84  ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127


>gi|25011258|ref|NP_735653.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae NEM316]
 gi|23095682|emb|CAD46868.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 759

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  I  ++  ++E +  +D      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T H+ C  I+++         +F I D  + + L++   K  
Sbjct: 84  ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127


>gi|295111139|emb|CBL27889.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Synergistetes
           bacterium SGP1]
          Length = 1213

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 23/194 (11%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSH 80
           ++   +       V A AG+GKT +L  R  RLLL +A   P  +L LT+T AAA EM  
Sbjct: 23  QRAAVTSSDGLITVGAGAGTGKTWVLSNRYARLLLTDADCLPCDILTLTYTDAAAGEMRR 82

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ + + A   + D  +S E  +                    +LE      + TIHAF 
Sbjct: 83  RIEDRVRALMDVPDAPVSQERRR-------------------EVLEGFSEAWISTIHAFA 123

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             ++++  L  ++    A+    Q+++     + +   + + +  +    +    +    
Sbjct: 124 ARLVRESGLALDVDPRSAVVSGPQTERFWARVRDALEEAGLGELADACGSSHLRAVAREL 183

Query: 201 DEDIETLISDIISN 214
           D+D   LIS  +  
Sbjct: 184 DQD--PLISAAVGR 195


>gi|198284627|ref|YP_002220948.1| exodeoxyribonuclease V subunit beta [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666658|ref|YP_002427300.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249148|gb|ACH84741.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518871|gb|ACK79457.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 1198

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 17/190 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHR 81
            S  + A+AG+GKT  +    LR++L +            P  +L +T T+AA  E+  R
Sbjct: 14  GSRLIEASAGTGKTWTIAALYLRMILGHGSEGEHFPRPLLPEDILVMTFTRAATQELKER 73

Query: 82  VLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           + + +   +               +  +    P+    ++A H L    +      + TI
Sbjct: 74  IRDRLQTAARYFRGTEHPAQPDPFLEALLADHPDPEVRARAAHQLTLAADAMDDSAIFTI 133

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            A+C+  +++        S F          L ++A +      +    E       ++ 
Sbjct: 134 DAWCQRTLREHAFATG--SDFRETLLLDETDLRDDAVRDFWRQEIYPLGEPALDEVLQLF 191

Query: 197 EISNDEDIET 206
              +    ET
Sbjct: 192 SGPDKIRQET 201


>gi|32267142|ref|NP_861174.1| putative recombination protein RecB [Helicobacter hepaticus ATCC
           51449]
 gi|32263195|gb|AAP78240.1| putative helicase [Helicobacter hepaticus ATCC 51449]
          Length = 971

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + LL   A+P  +L LT TK A+ EM HR+ + +      +
Sbjct: 9   FALKASAGSGKTFNLSLRFIYLLFQGANPHQILTLTFTKKASKEMYHRIHDYLKFLYDFT 68

Query: 94  DEILSAEITKIQGKKP-----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            +  + E   I          ++    K   +    +++    ++ TI AF  A++++F 
Sbjct: 69  QDKHTKEGMNIYAALIKEGLSDEFLRDKIESIYYEFIQSNP--RITTIDAFFHAVLKKFC 126

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               I+SHF + +        +E  +  L+++ L +  E+
Sbjct: 127 WYVGISSHFEVGNVS-----KDEINERFLSTLSLQDVREI 161


>gi|22537300|ref|NP_688151.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R]
 gi|22534170|gb|AAN00024.1|AE014244_1 ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R]
          Length = 759

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  I  ++  ++E +  +D      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T H+ C  I+++         +F I D  + + L++   K  
Sbjct: 84  ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127


>gi|260682110|ref|YP_003213395.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260685708|ref|YP_003216841.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
 gi|296449111|ref|ZP_06890898.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08]
 gi|296880912|ref|ZP_06904860.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07]
 gi|260208273|emb|CBA60686.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260211724|emb|CBE02039.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
 gi|296261930|gb|EFH08738.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08]
 gi|296428199|gb|EFH14098.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07]
          Length = 762

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 43/190 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ++L +   +++           + A AGSGKT +L  R+  L+         +L +T T 
Sbjct: 9   MNLDTLNPAQREAVEKTEGPVLILAGAGSGKTKVLTTRIAYLIEDKGVQAPNILAITFTN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV + I                      P   D                 + 
Sbjct: 69  KAANEMRERVEQNIG---------------------PETKD-----------------MW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I+++   +      F I D      L+++     L  + L +     KA 
Sbjct: 91  ISTFHSCCVRILRKDINKIGYNRSFVIYDSADQVTLVKDC----LKELNLSDKVFEPKAV 146

Query: 193 YEILEISNDE 202
              +  + D+
Sbjct: 147 ISAISGAKDK 156


>gi|170694337|ref|ZP_02885491.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170140760|gb|EDT08934.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 701

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++Q      +   F+I D +    +I+E   ST
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138


>gi|77412397|ref|ZP_00788706.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111]
 gi|77161557|gb|EAO72559.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111]
          Length = 759

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 49/161 (30%), Gaps = 40/161 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           I     +            + A AGSGKT +L  R+  L+     +P  +L +T T  AA
Sbjct: 6   IGMNDKQAKAVQTTDGPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R                           P   D                   + T
Sbjct: 66  REMRER----------------------AIALNPATQDTL-----------------IAT 86

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+ C  I+++         +F I D  + + L++   K  
Sbjct: 87  FHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127


>gi|23014129|ref|ZP_00053963.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 760

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 43/186 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +    +       V + AG+GKT +L  R+  +L +N A P   L +T T  AA EM
Sbjct: 37  NPEQFQAVTTTEGPVLVLSGAGTGKTKVLTSRLAHILASNLAQPWQCLAVTFTNRAAREM 96

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   S                                       G+ + T H+
Sbjct: 97  KERVAQLVGPVS--------------------------------------DGIWLGTFHS 118

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I++       ++  F + D +   +++++     ++   +D      +     ++ 
Sbjct: 119 LCLRILRSHAEAVGLSGDFTVLDADDQMRVLKQ----VMSEAHVDPKATPPQGLMATIQR 174

Query: 199 SNDEDI 204
             D  +
Sbjct: 175 WKDRAV 180


>gi|298481368|ref|ZP_06999561.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22]
 gi|298272572|gb|EFI14140.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22]
          Length = 1056

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D+   A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDKDSEAYLNRIKEETGKTEQEIREAAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
             ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|294506436|ref|YP_003570494.1| DNA helicase II [Salinibacter ruber M8]
 gi|294342764|emb|CBH23542.1| DNA helicase II [Salinibacter ruber M8]
          Length = 786

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 41/164 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
             +D ++  + E    +       + A  GSGKT  L  R+  LL A  A P  +L LT 
Sbjct: 24  RILDGLNDKQRE--AVTTTEGPVMIIAGPGSGKTRALTHRIAYLLAAGKAQPRDILALTF 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++   +                                       G
Sbjct: 82  TNKAANEMQERVEALVGDDAR--------------------------------------G 103

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           + V T H+    +++    +   +  F+I D   SK+LI +  K
Sbjct: 104 MWVGTFHSSFARLLRMEGDKIGYSEDFSIYDTADSKRLIRQQMK 147


>gi|295084357|emb|CBK65880.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Bacteroides
           xylanisolvens XB1A]
          Length = 1056

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D+   A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDKDSEAYLNRIKEETGKTEQEIREAAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
             ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|313667543|ref|YP_004047827.1| DNA helicase II [Neisseria lactamica ST-640]
 gi|313005005|emb|CBN86435.1| DNA helicase II [Neisseria lactamica 020-06]
          Length = 735

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 58/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +L+     EQL A   P +SA V A AGSGKT +L  R+  LL    A   +++ +T   
Sbjct: 9   NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTDQASVHSIMAVTFIN 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  +I                                            + 
Sbjct: 69  KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H  C   ++    +A + S F I D      LI+   KS 
Sbjct: 91  LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134


>gi|226310272|ref|YP_002770166.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226093220|dbj|BAH41662.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
          Length = 782

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 42/184 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
              ++           + A AGSGKT +L QR+  L+      P ++L +T T  AA EM
Sbjct: 12  NPEQREAVLTTEGPVLILAGAGSGKTKVLTQRIAYLISAKQVAPWSILAITFTNKAAREM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +RV  II   +                                          + T H+
Sbjct: 72  QNRVAAIIGGAAAQD-------------------------------------AWLSTFHS 94

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  I+++      I   F+I D      ++++     L  + +D  +   ++    +  
Sbjct: 95  LCVRILRRDIDRLGINRSFSILDAGDQLSVVKQC----LKELNIDPKQYEPRSILAAISG 150

Query: 199 SNDE 202
           + +E
Sbjct: 151 AKNE 154


>gi|83749766|ref|ZP_00946741.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551]
 gi|83723556|gb|EAP70759.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551]
          Length = 710

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 60/171 (35%), Gaps = 31/171 (18%)

Query: 15  DLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D ++Q   +Q  A +          T    V A AGSGKT  L  RV  L+   A P  +
Sbjct: 15  DYLAQLNDQQRQAVEFGVSGADAAETGPLLVLAGAGSGKTQTLGWRVAHLVAHGADPQRI 74

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT ++ AA+E+S R   ++      S    SA  T  Q   P                
Sbjct: 75  LLLTFSRRAASELSSRAGHLLARAMQGSTGTRSAAGTTYQTALP---------------- 118

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    T H     +++++     +   F I D   S  L+   +   
Sbjct: 119 ------WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDSADLLNVVRHEL 163


>gi|182684161|ref|YP_001835908.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14]
 gi|182629495|gb|ACB90443.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14]
          Length = 763

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIIAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|224534767|ref|ZP_03675339.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S]
 gi|224514015|gb|EEF84337.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S]
          Length = 658

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 9   SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 69  MKDRIKKILKSP--------------------------------------LSSLMVSTFH 90

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 91  AFGLFFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLLNKKVSLNSLSNVISLLKN 150

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 151 GILTLNDLKEEDINIFRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 199


>gi|218893376|ref|YP_002442245.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa LESB58]
 gi|218773604|emb|CAW29418.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa LESB58]
          Length = 1245

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 21  KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66
           + +  +A DP       S  + A+AG+GKT  +    +RL+L +           P  +L
Sbjct: 3   QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +T T AA  E+  R+   +   +       E     +  ++ + P +     AR LL  
Sbjct: 63  VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             E      V TIH++C  ++++   ++   S F    E    +L+ E  +         
Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
                 +A       S  E +   +  +++ + A
Sbjct: 180 LTAPAAQAVASC--YSGPETLGKALQPLLARQDA 211


>gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
 gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
          Length = 1200

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 68/206 (33%), Gaps = 36/206 (17%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEM 78
             ++     P     V A AG+GKTH L  R   LL ++       +L LT T+ AA EM
Sbjct: 22  PEQRQGVISPRSLVVVQAGAGTGKTHTLSSRFAWLLASDPTCRVEQILTLTFTEKAAREM 81

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +  W     E L                       L           + T+HA
Sbjct: 82  RDRIRCRLLQWLEAEPEKLGH---------------------LRDAAARIDEGYISTLHA 120

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLDNNEE 187
           F   ++++  L  ++     IA       L EE +              L     D  ++
Sbjct: 121 FALRVIRESGLVLDLDPESRIASPCGEGALFEEMEGAFDRLDPAWFLRLLEDPWRDRCQD 180

Query: 188 L--KKAFYEILEISNDEDIETLISDI 211
           L    AF  ++   +   +  L+ + 
Sbjct: 181 LFGDPAFPRLVNALSPRRLAELVREA 206


>gi|237716370|ref|ZP_04546851.1| ATP-dependent helicase [Bacteroides sp. D1]
 gi|262407972|ref|ZP_06084520.1| ATP-dependent helicase [Bacteroides sp. 2_1_22]
 gi|294644255|ref|ZP_06722024.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a]
 gi|294807965|ref|ZP_06766744.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b]
 gi|229444017|gb|EEO49808.1| ATP-dependent helicase [Bacteroides sp. D1]
 gi|262354780|gb|EEZ03872.1| ATP-dependent helicase [Bacteroides sp. 2_1_22]
 gi|292640419|gb|EFF58668.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a]
 gi|294444849|gb|EFG13537.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b]
          Length = 1056

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
            D+   A + +I+ +  K  +     A   L  +L      +V+TI +F +++M+    E
Sbjct: 64  GDKDSEAYLNRIKEETGKTEQEIREAAGVALNYMLHDYSRFRVETIDSFFQSVMRNLARE 123

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
             ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|317047247|ref|YP_004114895.1| UvrD/REP helicase [Pantoea sp. At-9b]
 gi|316948864|gb|ADU68339.1| UvrD/REP helicase [Pantoea sp. At-9b]
          Length = 1130

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 38/151 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +   A+    +  + A  G+GKT  LV RV  LL     P  +L LT +  AA EM+
Sbjct: 198 NDEQAKAAAHRGVAFLLEAGPGTGKTQTLVGRVKGLLNEGVDPRKILLLTFSNKAAGEMA 257

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  + +  +                                        + + T H+F
Sbjct: 258 ERIARVDSGAA--------------------------------------AAMWIGTFHSF 279

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
              ++++F  + N+     + D  ++ +L+E
Sbjct: 280 GLDLVRRFHDKLNLPQSPRMLDRTEAVELLE 310


>gi|209515754|ref|ZP_03264617.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209503781|gb|EEA03774.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 696

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTAPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++Q      +   F+I D +    +I+E   ST
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138


>gi|260592504|ref|ZP_05857962.1| putative UvrD/REP helicase domain protein [Prevotella veroralis
           F0319]
 gi|260535550|gb|EEX18167.1| putative UvrD/REP helicase domain protein [Prevotella veroralis
           F0319]
          Length = 1098

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 10/171 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    + L++ N    S +L +T T  A  EM  R+L  +   +H   E 
Sbjct: 10  ASAGSGKTFTLASEYITLVVKNPQDYSRILAVTFTNKATQEMKMRILTQLYGIAHSLKES 69

Query: 97  LSA-EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               E  + +   P  +    A   L  +       +V TI AF +AI++    E N+T+
Sbjct: 70  QPYFEQVQTKTDLPEITIRENAAEALSLLTHHYNYFRVLTIDAFFQAILRNLARELNLTA 129

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           +  I   +   +   +A  + +  +     EE K     I +   D +IE 
Sbjct: 130 NLRIDLNDTQVE--AQAVDNLVNDL-----EEGKDVLIWISDYI-DRNIED 172


>gi|260062807|ref|YP_003195887.1| putative helicase [Robiginitalea biformata HTCC2501]
 gi|88784375|gb|EAR15545.1| putative helicase [Robiginitalea biformata HTCC2501]
          Length = 771

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 39/163 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D ++   +++           V A AGSGKT +L  R+  L+        +L LT T  
Sbjct: 3   LDELND--AQKAPVLHKDGPLMVIAGAGSGKTRVLTYRIAHLMNQGVDAFNILSLTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +I+ +    +                                     L +
Sbjct: 61  AAREMKKRIADIVGSGEAKN-------------------------------------LWM 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    +++    +    S+F I D + S++LI    K  
Sbjct: 84  GTFHSVFARLLRYDGDKLGYPSNFTIYDTQDSQRLIASIIKEM 126


>gi|308051314|ref|YP_003914880.1| ATP-dependent DNA helicase Rep [Ferrimonas balearica DSM 9799]
 gi|307633504|gb|ADN77806.1| ATP-dependent DNA helicase Rep [Ferrimonas balearica DSM 9799]
          Length = 671

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++Q   +  +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQQEAVNYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                            ++AR           GL + T
Sbjct: 61  REMKERVAQTLGK--------------------------AEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E     L     ++ ++L+    +I
Sbjct: 84  FHTLGLDIIRREHKVLGLKPGFSLFDDQDTLALLKELTADELN----EDKDQLRMLITQI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|320535846|ref|ZP_08035924.1| UvrD/REP helicase [Treponema phagedenis F0421]
 gi|320147309|gb|EFW38847.1| UvrD/REP helicase [Treponema phagedenis F0421]
          Length = 760

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 43/166 (25%)

Query: 11  SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            + +D +     EQL A         + A AGSGKT ++  ++  L+      P  +L +
Sbjct: 1   MKELDYLKVLNPEQLEAVCHLGSPLLILAGAGSGKTRVITTKIAWLIAEQGIMPEQILAV 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-T 127
           T T  AA EM  R                                          +LE +
Sbjct: 61  TFTNKAANEMRER----------------------------------------AEMLEPS 80

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                ++T H+F   +++++     +TS F I DEE +  L+ +A 
Sbjct: 81  ASRAMLRTFHSFGAWLLRRYGDRIGLTSSFTIYDEEDTVVLLMKAM 126


>gi|170696350|ref|ZP_02887480.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170138756|gb|EDT06954.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 738

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 38/174 (21%)

Query: 11  SETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           S+    +++    Q  A +        P  +  V A AGSGKT+ L  RV  L++  A P
Sbjct: 28  SDAAAWLAKLNDAQREAVEYGADTPHAPPGALLVIAGAGSGKTNTLAHRVANLMVKGADP 87

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L LT ++ AA EM+ RV  I TA                               L  
Sbjct: 88  GRILLLTFSRRAALEMTRRVTRIATA------------------------------ALGT 117

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 G     T H+    +++++     +   F I D E S  L+   +   
Sbjct: 118 RAALAQGLTWAGTFHSVGARLLREYAELIGLAPAFTINDREDSADLMNLVRHEL 171


>gi|78223100|ref|YP_384847.1| DNA helicase/exodeoxyribonuclease V subunit beta [Geobacter
           metallireducens GS-15]
 gi|78194355|gb|ABB32122.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter
           metallireducens GS-15]
          Length = 1200

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +    LRL++     P  +L +T T+AA  E+  R+ E +     + 
Sbjct: 16  LIEASAGTGKTYAIACLYLRLVVERGLKPEEILVVTFTEAATKELRSRIRERLREARDVF 75

Query: 94  DEILSAEITKIQGKKPNKSDM---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               + +   ++    N+ +     +A   L   L T     + TIH FC   +Q+   E
Sbjct: 76  AGAGTTDDFLLKMGDTNRKEWPGTEEALRRLDLALRTFDCAAISTIHGFCSRALQENAFE 135

Query: 151 ANITSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +      ++ D E       LI+E                L      +
Sbjct: 136 SG-----SLYDTELLADQNPLIQEIVDDFWRQSFFGAEAPLLPHALRL 178


>gi|289168033|ref|YP_003446302.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6]
 gi|288907600|emb|CBJ22437.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6]
          Length = 763

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|15599480|ref|NP_252974.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAO1]
 gi|9950504|gb|AAG07672.1|AE004844_4 exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAO1]
          Length = 1245

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 21  KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66
           + +  +A DP       S  + A+AG+GKT  +    +RL+L +           P  +L
Sbjct: 3   QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +T T AA  E+  R+   +   +       E     +  ++ + P +     AR LL  
Sbjct: 63  VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPTERWPGCAR-LLRL 121

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             E      V TIH++C  ++++   ++   S F    E    +L+ E  +         
Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
                 +A       S  E +   +  +++ + A
Sbjct: 180 LTAPAAQAVASC--YSGPEALGKALQPLLARQDA 211


>gi|317508740|ref|ZP_07966393.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974]
 gi|316252988|gb|EFV12405.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974]
          Length = 804

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 54/163 (33%), Gaps = 40/163 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +            + A AGSGKT ++ +RV  LL    A P  +L +T T  A
Sbjct: 17  LHGLNPQQAEAVVHLGAPLCIIAGAGSGKTSVITRRVAWLLAERQARPGEILAITFTNKA 76

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  RV  ++                                            + V 
Sbjct: 77  AGELKERVGALVGG--------------------------------------RMWEMWVS 98

Query: 135 TIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C   ++ +   EA    +F I D + SK+L+    +  
Sbjct: 99  TFHSSCARFLRAEASAEAGFDRNFTIYDSDDSKRLLSMVAEEL 141


>gi|254244904|ref|ZP_04938226.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 2192]
 gi|126198282|gb|EAZ62345.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 2192]
          Length = 1245

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 21  KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66
           + +  +A DP       S  + A+AG+GKT  +    +RL+L +           P  +L
Sbjct: 3   QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGESAFGRPLSPPEIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +T T AA  E+  R+   +   +       E     +  ++ + P +     AR LL  
Sbjct: 63  VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPTERWPGCAR-LLRL 121

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             E      V TIH++C  ++++   ++   S F    E    +L+ E  +         
Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
                 +A       S  E +   +  +++ + A
Sbjct: 180 LTAPAAQAVASC--YSGPETLGKALQPLLARQDA 211


>gi|224531919|ref|ZP_03672551.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116]
 gi|224511384|gb|EEF81790.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116]
          Length = 658

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 9   SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAHLLLKGIAQKEILALTFTNKAANE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 69  MKDRIKKILKSPLT--------------------------------------NLMVSTFH 90

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175
           AF    +++         +F+I D+     L++E                          
Sbjct: 91  AFGLFFLKENYKLLGYRKNFSIYDDNDKISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 150

Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 151 GILTIDDLKEEDINIFRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 199


>gi|116052318|ref|YP_792629.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587539|gb|ABJ13554.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 1245

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 21  KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66
           + +  +A DP       S  + A+AG+GKT  +    +RL+L +           P  +L
Sbjct: 3   QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGESAFGRPLSPPEIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +T T AA  E+  R+   +   +       E     +  ++ + P +     AR LL  
Sbjct: 63  VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPTERWPGCAR-LLRL 121

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             E      V TIH++C  ++++   ++   S F    E    +L+ E  +         
Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
                 +A       S  E +   +  +++ + A
Sbjct: 180 LTAPAAQAVASC--YSGPEALGKALQPLLARQDA 211


>gi|260887265|ref|ZP_05898528.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185]
 gi|260863327|gb|EEX77827.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185]
          Length = 766

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 43/167 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +    ++  + E +   D      + A AGSGKT +L  R+  LL     P ++L +T T
Sbjct: 13  DIFQGLNPMQREAVAHID--GPLLIMAGAGSGKTKVLTCRIANLLAHGVPPYSILAITFT 70

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  RV  +I                                            +
Sbjct: 71  NKAAAEMRERVDRMIGGLGK--------------------------------------DV 92

Query: 132 KVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKST 176
            + T H+FC   +++  +EA      +F I D   SK +I+   K  
Sbjct: 93  WLSTFHSFCARFLRRE-IEAGEVYKKNFVIYDTSDSKTVIKACLKEL 138


>gi|297588277|ref|ZP_06946920.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516]
 gi|297573650|gb|EFH92371.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516]
          Length = 967

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 36/164 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I  + +++L  S   ++  V+A AG+GKT ++ +R   +        +++C+T T  AA
Sbjct: 1   MIKFSDNQKLAYSTIDKNVCVNAGAGTGKTEVVSERFRYMYENGIDIKSIVCITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+++ +     + D                                    + V T
Sbjct: 61  DEMKDRIIQKLNNPRLVDD------------------------------------INVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           I +FC+ I+       +I   F I +++Q+ K+I E     L +
Sbjct: 85  ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKMINEIFDKILEN 128


>gi|86141573|ref|ZP_01060119.1| putative helicase [Leeuwenhoekiella blandensis MED217]
 gi|85832132|gb|EAQ50587.1| putative helicase [Leeuwenhoekiella blandensis MED217]
          Length = 773

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 39/164 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +++  +++        +  V A AGSGKT +L  R+  L+        +L LT T 
Sbjct: 4   LLEGLNE--AQRAPVLQKEGAMMVIAGAGSGKTRVLTMRIAHLMQQGVDAFNILSLTFTN 61

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+  I+      +                                     L 
Sbjct: 62  KAAREMKSRIGTIVGNSEAKN-------------------------------------LW 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I++          +F I D + S++LI    K  
Sbjct: 85  MGTFHSVFAKILRIEGHHLGFPPNFTIYDSQDSQRLISAIIKEM 128


>gi|254239046|ref|ZP_04932369.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa C3719]
 gi|126170977|gb|EAZ56488.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa C3719]
          Length = 1245

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 21  KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66
           + +  +A DP       S  + A+AG+GKT  +    +RL+L +           P  +L
Sbjct: 3   QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +T T AA  E+  R+   +   +       E     +  ++ + P +     AR LL  
Sbjct: 63  VVTFTDAATQELRERIRSRLGEAARCFSEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             E      V TIH++C  ++++   ++   S F    E    +L+ E  +         
Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
                 +A       S  E +   +  +++ + A
Sbjct: 180 LTAPAAQAVASC--YSGPETLGKALQPLLARQDA 211


>gi|255691765|ref|ZP_05415440.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565]
 gi|260622481|gb|EEX45352.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565]
          Length = 1056

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 9/175 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +      
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGIQIG 64

Query: 93  S-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D     +  K +  +  +     A   L  +L      +V+TI +F +++M+    E 
Sbjct: 65  DRDSQAYLDRIKKETGRAEQEIREAAGVALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            ++ +  I  E  + +++ +A  S +  +              +L+  N+   + 
Sbjct: 125 ELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172


>gi|296390981|ref|ZP_06880456.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAb1]
          Length = 1245

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 21  KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66
           + +  +A DP       S  + A+AG+GKT  +    +RL+L +           P  +L
Sbjct: 3   QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGESAFGRPLSPPEIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +T T AA  E+  R+   +   +       E     +  ++ + P +     AR LL  
Sbjct: 63  VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             E      V TIH++C  ++++   ++   S F    E    +L+ E  +         
Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
                 +A       S  E +   +  +++ + A
Sbjct: 180 LTAPAAQAVASC--YSGPEALGKALQPLLARQDA 211


>gi|148994163|ref|ZP_01823478.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68]
 gi|168488930|ref|ZP_02713129.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195]
 gi|147927406|gb|EDK78436.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68]
 gi|183572486|gb|EDT93014.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195]
 gi|332073447|gb|EGI83926.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17570]
          Length = 763

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|149006240|ref|ZP_01829952.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP18-BS74]
 gi|307127381|ref|YP_003879412.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B]
 gi|147762017|gb|EDK68979.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484443|gb|ADM91312.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B]
 gi|332075042|gb|EGI85513.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17545]
          Length = 763

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|307731432|ref|YP_003908656.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307585967|gb|ADN59365.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 699

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++Q      +   F+I D +    +I+E   ST
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138


>gi|261345272|ref|ZP_05972916.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541]
 gi|282566971|gb|EFB72506.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541]
          Length = 675

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q           V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEYVDGPCLVLAGAGSGKTRVITNKIAHLIRHCGYQPRQIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR L+           + T H 
Sbjct: 64  KERVGQTLGK--------------------------KEARGLI-----------ISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      I S+F++ D++    L++E     L     ++ + LK+    I   
Sbjct: 87  LGLEIIKREYKALGIKSNFSLFDDQDQIALLKELTFDLLE----EDKDLLKQLISTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|319947223|ref|ZP_08021457.1| exonuclease RexA [Streptococcus australis ATCC 700641]
 gi|319747271|gb|EFV99530.1| exonuclease RexA [Streptococcus australis ATCC 700641]
          Length = 1227

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 28/222 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +         +  VSA+AGSGKT ++VQR+L  L        L   T T  AA E+ 
Sbjct: 29  TPEQIEAIYSSGTNILVSASAGSGKTFVMVQRILDQLHRGISIQQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +      S +                    + +H L   +       + T+ AF
Sbjct: 89  ERLEKELEKSLKASQD-------------------EELKHHLAQQIAELPTSDIGTMDAF 129

Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            + ++ ++     ++  F I     +   L  +  +            +  + F  +++ 
Sbjct: 130 TQRLVSKYGYLLGLSPTFRILQSASEQSLLKNDCFEQVFERFYEVQGPD--RLFSRLVKN 187

Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
              +        +   +  +  L+ F  S    +  +E+S  
Sbjct: 188 FTGKG-----KSLAGFKDQVYALVDFLQSTADPQAWLEESFL 224


>gi|315187021|gb|EFU20778.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 665

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  ++  S Q  A         + A AGSGKT ++  R+  +L ++     +L LT T 
Sbjct: 3   IDYRAELNSAQYEAVTTIDGPLLIIAGAGSGKTRVITYRIAYMLDSHIPQKAILALTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +                                             L 
Sbjct: 63  KAAREMWERVRTLTGK--------------------------------------KLTNLT 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+F   I+++          F+I D +  K L+++  +  
Sbjct: 85  VGTFHSFGAQILREHIHLLGYRPTFSIYDTQDQKALLKQCIQEV 128


>gi|297744967|emb|CBI38559.3| unnamed protein product [Vitis vinifera]
          Length = 951

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 38/166 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           E+S+ +  ++ T+ E    SD +    + A  GSGKT  +V R+L LL     PS +L +
Sbjct: 4   EYSKYLQSLNDTQREA-ACSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILAM 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T AAA+EMS R+  +                                        ET 
Sbjct: 63  TFTTAAASEMSGRIAAVAGK-------------------------------------ETA 85

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             + V T H+F   + +    +   TS F I    Q ++ I EA +
Sbjct: 86  KEVTVSTFHSFALQLCRSHAEKLGRTSEFLIYGHGQQRRAIIEAVR 131


>gi|224437387|ref|ZP_03658358.1| putative recombination protein RecB [Helicobacter cinaedi CCUG
           18818]
 gi|313143850|ref|ZP_07806043.1| helicase [Helicobacter cinaedi CCUG 18818]
 gi|313128881|gb|EFR46498.1| helicase [Helicobacter cinaedi CCUG 18818]
          Length = 991

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE----IITAW 89
             + A+AGSGKT  L  R + LL   A+P  +L LT TK A+ EM  R+ E    ++ ++
Sbjct: 6   LALKASAGSGKTFSLSLRFIYLLFQGANPHQILTLTFTKKASNEMYRRIYEHLKSLLLSF 65

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              + E        +Q    +         L  T +++    ++ TI +F  +++++F  
Sbjct: 66  ETGTFESNDIYKALLQKGLSHNQISENIAALYHTFMQSSS--RITTIDSFFHSVLKKFCW 123

Query: 150 EANITSHFAI--ADEEQSKKLI 169
              ++S F I   D+ +  ++ 
Sbjct: 124 YVGVSSRFEIGQIDKGEMYEMF 145


>gi|85714693|ref|ZP_01045680.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
 gi|85698578|gb|EAQ36448.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
          Length = 814

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L    A P  +L +T T  
Sbjct: 32  YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPGEVLSVTFTNK 91

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM HR+ +++                                          G   +
Sbjct: 92  AAREMKHRLGQMLGQSVE-------------------------------------GMPWL 114

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       + S+F I D +   +L+++     L +  +D+     +   
Sbjct: 115 GTFHSIAGRILRVHAELVQLKSNFTILDVDDQIRLLKQ----LLQADNIDDKRWPARMLA 170

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 171 GLIDGWKNRGL 181


>gi|313106801|ref|ZP_07793015.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 39016]
 gi|310879517|gb|EFQ38111.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 39016]
          Length = 1245

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 21  KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66
           + +  +A DP       S  + A+AG+GKT  +    +RL+L +           P  +L
Sbjct: 3   QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGESAFGRPLSPPEIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +T T AA  E+  R+   +   +       E     +  ++ + P +     AR LL  
Sbjct: 63  VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             E      V TIH++C  ++++   ++   S F    E    +L+ E  +         
Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
                 +A       S  E +   +  +++ + A
Sbjct: 180 LTAPAAQAVASC--YSGPEALGKALQPLLARQDA 211


>gi|330838978|ref|YP_004413558.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185]
 gi|329746742|gb|AEC00099.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185]
          Length = 755

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 43/168 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            +    ++  + E +   D      + A AGSGKT +L  R+  LL     P ++L +T 
Sbjct: 1   MDIFQGLNPMQREAVAHID--GPLLIMAGAGSGKTKVLTCRIANLLAHGVPPYSILAITF 58

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  RV  +I                                            
Sbjct: 59  TNKAAAEMRERVDRMIGGLGK--------------------------------------D 80

Query: 131 LKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKST 176
           + + T H+FC   +++  +EA      +F I D   SK +I+   K  
Sbjct: 81  VWLSTFHSFCARFLRRE-IEAGEVYKKNFVIYDTSDSKTVIKACLKEL 127


>gi|107100131|ref|ZP_01364049.1| hypothetical protein PaerPA_01001152 [Pseudomonas aeruginosa PACS2]
          Length = 1245

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 21  KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66
           + +  +A DP       S  + A+AG+GKT  +    +RL+L +           P  +L
Sbjct: 3   QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEIL 62

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +T T AA  E+  R+   +   +       E     +  ++ + P +     AR LL  
Sbjct: 63  VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             E      V TIH++C  ++++   ++   S F    E    +L+ E  +         
Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
                 +A       S  E +   +  +++ + A
Sbjct: 180 LTAPAAQAVASC--YSGPETLGKALQPLLARQDA 211


>gi|257456971|ref|ZP_05622152.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
 gi|257445680|gb|EEV20742.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
          Length = 661

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 38/163 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ++  +    +    +       + A AGSGKT ++  R+  +L +    S +L LT T  
Sbjct: 1   MNTENLNPEQAKAVNTINGPVLIIAGAGSGKTRVITFRIAHMLESGIPQSQILALTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ E+                                             L +
Sbjct: 61  AAREMEQRIKELTGK--------------------------------------KLQNLTI 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T HA    I++++        +F+I DE    +LI+E+ K  
Sbjct: 83  STFHALGVKILREYIDRLGWRQNFSIYDEVDRNQLIKESAKEL 125


>gi|312864740|ref|ZP_07724971.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415]
 gi|311099867|gb|EFQ58080.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415]
          Length = 764

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 71/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  +       + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLLNGMNDKQAEAVRTT--QGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                      +      +  +              
Sbjct: 59  TFTNKAAREMRER---------------------AMLLNPATEETL-------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L++   K       +D+ +  
Sbjct: 84  ----IATFHSMCVRILRREADHIGYDRNFTIVDPGEQRTLMKRIIKGF----NMDSKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++A    +  + ++ I+ 
Sbjct: 136 ERAILGTISNAKNDLIDE 153


>gi|225552476|ref|ZP_03773416.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1]
 gi|225371474|gb|EEH00904.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1]
          Length = 659

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180
           AF    +++         +F+I D+     L++E                L+++      
Sbjct: 92  AFGLFFLKENYKLLGCRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                  + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|167582799|ref|ZP_02375673.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis TXDOH]
          Length = 695

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|77360798|ref|YP_340373.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875709|emb|CAI86930.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 1213

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 18/176 (10%)

Query: 35  WVSANAGSGKTHILVQRVLR-------------LLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + A+AG+GKT+ +    LR             LL        +L +T T AA  E+  R
Sbjct: 16  LIEASAGTGKTYTITGLYLRYLLGMQIADDANSLLNKPLSVEQILVVTFTDAATQEIKDR 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V   I             +   I G      D  +A  LL    ++     + TIH FC+
Sbjct: 76  VRNRIITARDALLGQDPKD-ELIAGVIAAVDDKHRAFDLLDAAAKSMDEAAIFTIHGFCQ 134

Query: 142 AIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            +++Q   E+ +  +   I DE     ++ E  K    + +   N+E   A   + 
Sbjct: 135 RMLKQHAFESGVAFNLEFILDERD---ILLETIKDFWRAFVYPLNKEKTDAILGVF 187


>gi|186477746|ref|YP_001859216.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184194205|gb|ACC72170.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 731

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 40  GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKA 97

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 98  AAEMRERVGKLLEGKTLTAPGKEGRKVP-------------------------VNQLTVC 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++Q      +   F+I D +    +I+E   ST
Sbjct: 133 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 174


>gi|157803783|ref|YP_001492332.1| DNA helicase II [Rickettsia canadensis str. McKiel]
 gi|157785046|gb|ABV73547.1| DNA helicase II [Rickettsia canadensis str. McKiel]
          Length = 661

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 44/164 (26%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D ++    +Q  A         + A AG+GKT +L  R+  ++  N A P  +L +T T 
Sbjct: 15  DFLNTLNPQQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIYQNLASPHNILAVTFTN 74

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +I                                           GL 
Sbjct: 75  KAAKEMVERVHSLI----------------------------------------NCDGLN 94

Query: 133 VQTIHAFCEAIMQQF--PLEANITSHFAIADEEQSKKLIEEAKK 174
           + T H+    I+++    L   + + F I  +++  KL+++  K
Sbjct: 95  IGTFHSMAARILREHIEHLNLGLNNRFTIISQDEQLKLVKDIVK 138


>gi|256831952|ref|YP_003160679.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
 gi|256685483|gb|ACV08376.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
          Length = 1103

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 9/179 (5%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S ++ ++ +DL   T  +Q +   P  S  V A AGSGKT  +  RV+ L+      P  
Sbjct: 7   SARDIAQLLDLPHPTVEQQAIIEAPLESMLVIAGAGSGKTETMSARVVWLIANQIIAPER 66

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA E++ R+   +     ++  + S  I     +                 
Sbjct: 67  VLGLTFTRKAAGELTERIRARLAHLDRVAPGLTSRRIDTNNDRHTTADTPP--------A 118

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           L       + T +++  +++ +  L         +  E     ++ +        +  D
Sbjct: 119 LSALARPTISTYNSYAASLVTEHGLRIGREPGARLLTEASIWAMVSDIVDHWQEDLDTD 177


>gi|300697919|ref|YP_003748580.1| atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CFBP2957]
 gi|299074643|emb|CBJ54200.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CFBP2957]
          Length = 710

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 60/171 (35%), Gaps = 31/171 (18%)

Query: 15  DLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D ++Q   +Q  A +          T    V A AGSGKT  L  RV  L+   A P  +
Sbjct: 15  DYLAQLNDQQRQAVEFGVSGADAAETGPLLVLAGAGSGKTQTLGWRVAHLVAHGADPQRI 74

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT ++ AA+E+S R   ++      +    SA  T  Q   P                
Sbjct: 75  LLLTFSRRAASELSSRAGHLLARAMQGNTGTRSAAGTTYQTALP---------------- 118

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    T H     +++++     +   F I D   S  L+   +   
Sbjct: 119 ------WAGTFHGIGARLLREYADRIGLAPDFTIHDRSDSADLLNVVRHEL 163


>gi|295678114|ref|YP_003606638.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295437957|gb|ADG17127.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 696

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTAPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++Q      +   F+I D +    +I+E   ST
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138


>gi|169832763|ref|YP_001694512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995265|gb|ACA35877.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 763

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|225454963|ref|XP_002277737.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1151

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 38/166 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           E+S+ +  ++ T+ E    SD +    + A  GSGKT  +V R+L LL     PS +L +
Sbjct: 244 EYSKYLQSLNDTQREA-ACSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILAM 302

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T AAA+EMS R+  +                                        ET 
Sbjct: 303 TFTTAAASEMSGRIAAVAGK-------------------------------------ETA 325

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             + V T H+F   + +    +   TS F I    Q ++ I EA +
Sbjct: 326 KEVTVSTFHSFALQLCRSHAEKLGRTSEFLIYGHGQQRRAIIEAVR 371


>gi|189485139|ref|YP_001956080.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287098|dbj|BAG13619.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 1024

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V A+AG+GKT+ L +R L LLL    N     ++ +T T  AA EM +RV++ +   +  
Sbjct: 9   VLASAGTGKTYNLAKRYLYLLLSSNDNTSIKNIIAVTFTNKAAVEMKYRVIDYLKKAALS 68

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            D     +  ++   K       ++  +L  I +      + TI +F   I++   +  +
Sbjct: 69  LDTGDFFDELELTKDKIA----QRSAAVLKDIFKFYDNFNISTIDSFKNRILKSCAMSID 124

Query: 153 ITSHFAIADEEQSKKLI 169
           I+ +F I  +     L 
Sbjct: 125 ISPNFVIEQDYSDNLLF 141


>gi|46445668|ref|YP_007033.1| ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399309|emb|CAF22758.1| probable ATP-dependent DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 761

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 45/187 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +L +  K ++   +       V A AGSGKT ++  R++ L+     PS +L +T T  A
Sbjct: 39  NLFNLNKEQKDAVTTLEGPVLVLAGAGSGKTRVVTSRIVNLIENGISPSNILGVTFTNKA 98

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV ++                                               + 
Sbjct: 99  AQEMRERVCKLTQHHVL-----------------------------------------IC 117

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+    I+++          F I DEE   KL     K+ L  +   + +   K F +
Sbjct: 118 TFHSLGAKILRESIHVLGYQRDFTIYDEEDVNKL----VKACLMELNWQDKKVDAKPFRQ 173

Query: 195 ILEISND 201
           ++  + +
Sbjct: 174 MISQAKN 180


>gi|307131099|ref|YP_003883115.1| exonuclease V (RecBCD complex), subunit beta [Dickeya dadantii
           3937]
 gi|306528628|gb|ADM98558.1| exonuclease V (RecBCD complex), beta subunit [Dickeya dadantii
           3937]
          Length = 1224

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHR 81
             S  + A+AG+GKT  +    +RL+L +          +P  +L +T T AA  E+  R
Sbjct: 18  AGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPDILVVTFTDAATRELRDR 77

Query: 82  VLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +   +   +        D+ +   + +++   P +     AR L +   E      V TI
Sbjct: 78  IRARLAQAAAYFQPDGKDDAVDPLLGELRADYPPEQWPDCARKLQLAA-EWMDEAAVSTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN----------- 185
           H++C  ++ +   ++   S F    E     L+ E  +    +     +           
Sbjct: 137 HSWCNRMLGEHAFDSG--SLFNQTLETDQSDLLLEVVRDYWRTFFFPLDARDVLELRYSW 194

Query: 186 ---EELKKAFYEILEISNDEDIETLISDIISN-RTALKLIFFFFSYLWRR 231
              E   ++   +LE +++  I+ L + I S  R             W +
Sbjct: 195 PSPEHFYRSVTPLLEYADEIGIDDLPAQIFSAVREEKTRRLSALKAPWPQ 244


>gi|226320834|ref|ZP_03796387.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805]
 gi|226233776|gb|EEH32504.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805]
          Length = 242

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 65/229 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 10  SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 70  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175
           AF    +++         +F+I D+     L++E                          
Sbjct: 92  AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151

Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219
                + + + +  + + + E L + N  D + LI    +++SN + ++
Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200


>gi|307704751|ref|ZP_07641647.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597]
 gi|307621660|gb|EFO00701.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597]
          Length = 763

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|194397544|ref|YP_002037718.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54]
 gi|194357211|gb|ACF55659.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54]
          Length = 763

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|114563702|ref|YP_751215.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina
           NCIMB 400]
 gi|114334995|gb|ABI72377.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina
           NCIMB 400]
          Length = 1276

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA--NAHP---STLLCLTHTKAAAAEMSHRVLEI 85
           + S+ + A+AG+GKT+ +    LRLLL      P     +L +T T AA  E+  R+ + 
Sbjct: 17  SGSSLIEASAGTGKTYTISGLYLRLLLGHGGKAPLSCEQILVVTFTNAATEELRDRIRKR 76

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       ++ E  +   +  ++ +   A   L   L++     + TIHAFC+ ++
Sbjct: 77  INLAFKRFLGLAVNDEFIEQLYQDTSEDERPIALRRLDLALKSLDEAAIFTIHAFCQRVL 136

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
                E+++   S F + D E     +  A +     +       L +A  ++ 
Sbjct: 137 SDMAFESSLLFESEFTLDDSE----FLHHAVRDFWREVCYPLPPFLAQAISDVF 186


>gi|91203329|emb|CAJ72968.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 729

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 44/186 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  ++   +       + A AGSGKT ++ +R+  L+     P  +L +T T  AA EM+
Sbjct: 8   TDKQREAITHIDGPLLIVAGAGSGKTRVITRRIGYLMSEGISPYNILAITFTNKAANEMA 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV +                                          +  G+ V T H  
Sbjct: 68  ERVKKF----------------------------------------SSHKGMWVSTFHKM 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  I+++       +  F I D            KS +A + +D      ++    +  +
Sbjct: 88  CSRILRKDIELLGYSKDFTIYDTVDQL----NRIKSIMADLEIDTAHWKPRSIISSISNA 143

Query: 200 NDEDIE 205
            ++ I+
Sbjct: 144 KNKLID 149


>gi|157827215|ref|YP_001496279.1| DNA helicase II [Rickettsia bellii OSU 85-389]
 gi|157802519|gb|ABV79242.1| DNA helicase II [Rickettsia bellii OSU 85-389]
          Length = 653

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 43/162 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L S  + +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  A
Sbjct: 7   LHSLNEQQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  +++++                                        GL + 
Sbjct: 67  AKEMQERVHNLVSSY----------------------------------------GLNIG 86

Query: 135 TIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+    I++     L   + S F I  ++   +LI++  K
Sbjct: 87  TFHSMAARILRDQIEHLNLGLNSRFTIISQDDQLRLIKDIVK 128


>gi|225010856|ref|ZP_03701324.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
 gi|225005064|gb|EEG43018.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
          Length = 773

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 37/159 (23%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  ++++           V A AGSGKT +L  R+  L+        +L LT T  AA E
Sbjct: 7   SLNEAQKAPVLHKDGPLMVIAGAGSGKTRVLTIRIAHLMSLGVDSFNILALTFTNKAARE 66

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M HR+  I+      +                                     L + T H
Sbjct: 67  MKHRISSIVGGAEAKN-------------------------------------LWMGTFH 89

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           +    +++    +    S+F I D + S++LI    K  
Sbjct: 90  SVFAKLLRFDGDKLGYPSNFTIYDTQDSQRLIASIIKEM 128


>gi|149921796|ref|ZP_01910242.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149817357|gb|EDM76831.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 683

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            +DL      +Q    + P     V A AG+GKT  L  RV +L+     P  ++ +T T
Sbjct: 14  AVDLQRDLNPQQRAVVEAPAGKILVLAGAGTGKTRTLTYRVAKLVAGGCQPERIMLVTFT 73

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM HRV  ++T                         DM ++              
Sbjct: 74  NRAAREMVHRVESLLTI------------------------DMRRSAS------------ 97

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H     I++++     +   F I D E ++ L+       
Sbjct: 98  --GTFHHVGNRILRRYGEAVGLGPDFGILDPEDARDLMGSVVSEL 140


>gi|91205500|ref|YP_537855.1| DNA helicase II [Rickettsia bellii RML369-C]
 gi|122425652|sp|Q1RIP8|UVRD_RICBR RecName: Full=Probable DNA helicase II homolog
 gi|91069044|gb|ABE04766.1| DNA helicase II [Rickettsia bellii RML369-C]
          Length = 653

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 43/162 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L S  + +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  A
Sbjct: 7   LHSLNEQQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  +++++                                        GL + 
Sbjct: 67  AKEMQERVHNLVSSY----------------------------------------GLNIG 86

Query: 135 TIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+    I++     L   + S F I  ++   +LI++  K
Sbjct: 87  TFHSMAARILRDQIEHLNLGLNSRFTIISQDDQLRLIKDIVK 128


>gi|285016934|ref|YP_003374645.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283472152|emb|CBA14659.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 733

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
           + S  +D ++  + E + A  P     V A AGSGKT +L  R+  L  +       +  
Sbjct: 2   DVSHLLDDLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLTHRIAWLHEVHGVPVHGMFA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM HR    +   S                                     
Sbjct: 60  VTFTNKAAGEMRHRADLQLRNGSR------------------------------------ 83

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G+ + T H     +++    +A +   F + D +   +L++   +  
Sbjct: 84  --GMWIGTFHGLAHRLLRLHWQDARLPESFQVLDADDQLRLVKRVVQQL 130


>gi|15903039|ref|NP_358589.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae R6]
 gi|116515714|ref|YP_816449.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39]
 gi|15458610|gb|AAK99799.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
 gi|116076290|gb|ABJ54010.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39]
          Length = 763

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|325298044|ref|YP_004257961.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
 gi|324317597|gb|ADY35488.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
          Length = 1071

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 12/216 (5%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86
           +D  +     A+AGSGKT  L    ++ L+ +      +L +T T  A AEM +R+LE +
Sbjct: 2   TDYPQLLVYKASAGSGKTFTLALHYIKQLVEDPTAYRHILAVTFTNKATAEMKNRILEQL 61

Query: 87  TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
               + L       +  K      +      A   L  I+      +++TI +F +A+++
Sbjct: 62  YGLGYGLPTSKSYLQELKKTCALSDTEIRQAAIRALHNIIHDYSRFRIETIDSFFQAVLR 121

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDED 203
               E  + ++  I  E  +  ++ +   + +  +  D    L     E +E  IS+D+ 
Sbjct: 122 NLARELELGANMTI--ELNNADVLSDTVDAMIEKL--DRLSPLLSWLLEYIEQRISDDKR 177

Query: 204 IETLISDIIS--NRTALKLIFFFFSYLWRRKIIEKS 237
            +  ISD I    R  L   +       RRK+ + +
Sbjct: 178 WD--ISDEIKGFGRNILDERYIEKGEGLRRKLADPA 211


>gi|225858900|ref|YP_002740410.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585]
 gi|225721717|gb|ACO17571.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585]
          Length = 763

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|15900955|ref|NP_345559.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4]
 gi|111657604|ref|ZP_01408340.1| hypothetical protein SpneT_02001214 [Streptococcus pneumoniae
           TIGR4]
 gi|14972562|gb|AAK75199.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4]
          Length = 763

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|301794204|emb|CBW36623.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
           INV104]
          Length = 763

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|168486496|ref|ZP_02711004.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570538|gb|EDT91066.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC1087-00]
          Length = 763

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|319791122|ref|YP_004152762.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315593585|gb|ADU34651.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 705

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 30/152 (19%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
              +D  R   V A AGSGKT  L  RV  L+     P  LL LT ++ AA EM  R  +
Sbjct: 41  AAVADDHRPLLVIAGAGSGKTSTLAHRVAHLIADGVDPQRLLLLTFSRRAAQEMERRAGQ 100

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           ++     L  E                                P      T H     ++
Sbjct: 101 VLAKVLGLKSERP------------------------------PALPWAGTFHGIGARLL 130

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           +++  +  +  +F I D   ++ L+   +   
Sbjct: 131 REYAQQIGLDENFTIHDRGDAEDLMGLVRHEL 162


>gi|254250937|ref|ZP_04944255.1| UvrD/REP helicase [Burkholderia dolosa AUO158]
 gi|124893546|gb|EAY67426.1| UvrD/REP helicase [Burkholderia dolosa AUO158]
          Length = 714

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 23  GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 80

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 81  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 115

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 116 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 152


>gi|269123730|ref|YP_003306307.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
 gi|268315056|gb|ACZ01430.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
          Length = 735

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 40/161 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++  A        + A AGSGKT  L  ++  ++   N +P  +L LT T  A
Sbjct: 4   LDNLNTEQRQAAKLVEGQTLILAGAGSGKTRTLTFKIAYMIKEKNINPRNILALTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++                                            + + 
Sbjct: 64  AKEMKERVETLVGD---------------------------------------NNEILIS 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+F   +++ +      T++F I D    K +I++  KS
Sbjct: 85  TFHSFAVRLLRTYSERIGYTNNFNIYDNNDQKSIIKKILKS 125


>gi|268592938|ref|ZP_06127159.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131]
 gi|291311730|gb|EFE52183.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131]
          Length = 674

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q           V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVDGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPRQIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR L+           + T H 
Sbjct: 64  KERVAQTLGK--------------------------KEARGLI-----------ISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      I ++F++ D++    L++E     L     ++ + LK+    I   
Sbjct: 87  LGLEIIKREYKALGIKANFSLFDDQDQMALLKELTFDLLE----EDKDLLKQLISAISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|303247358|ref|ZP_07333631.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302491272|gb|EFL51161.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 725

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 39/204 (19%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++  A        V A AGSGKT  +V R+  L+     P+ +L LT T+ AA EM 
Sbjct: 8   NPAQRQAALTTEGPMLVIAGAGSGKTRTIVYRLAHLVSDGVDPAAILLLTFTRKAAQEM- 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                                             +++A  LL         +   T HAF
Sbjct: 67  ----------------------------------LTRAGMLLAMGPSGVASVSGGTFHAF 92

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             A ++++   A     F + D+  S+ ++ +A K TL     D +   K A   +L  +
Sbjct: 93  AFATLRRYHAAAGFPDGFTVLDQADSEDILGQA-KDTLGIGKGDRSFPRKSAVLGLLSKA 151

Query: 200 NDEDIETLISDIISNRTALKLIFF 223
            +++++  + D++S R A  L+ +
Sbjct: 152 RNKELD--VGDVLS-REAFHLLPY 172


>gi|167623786|ref|YP_001674080.1| exodeoxyribonuclease V subunit beta [Shewanella halifaxensis
           HAW-EB4]
 gi|167353808|gb|ABZ76421.1| exodeoxyribonuclease V, beta subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 1240

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT  +    +RLLL +    P     +L +T T AA  E+  R+ + 
Sbjct: 34  GGSRLIEASAGTGKTFTIAGLYVRLLLGHGIESPLTCEQILVVTFTNAATGELRDRIRKK 93

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       +  E+        ++S+++ AR  L   L++     + TIH FC+ I+
Sbjct: 94  IQLAYRRFIGLEVDDELINALYAATDESELAIARKRLDLALKSLDEAAIFTIHGFCQRIL 153

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179
                E+++   S F + D E     +  A +     
Sbjct: 154 ADMAFESSLLFESEFTLDDSE----FLHHAVRDFWRE 186


>gi|251767077|ref|ZP_02265907.2| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20]
 gi|243063896|gb|EES46082.1| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20]
          Length = 738

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 42  GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 99

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 100 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 134

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 135 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 171


>gi|149024889|ref|ZP_01836290.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72]
 gi|147929512|gb|EDK80506.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72]
          Length = 763

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|149003797|ref|ZP_01828629.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP14-BS69]
 gi|225861053|ref|YP_002742562.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650760|ref|ZP_04525012.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI
           1974]
 gi|237822347|ref|ZP_04598192.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298230846|ref|ZP_06964527.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255795|ref|ZP_06979381.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502897|ref|YP_003724837.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254202|ref|ZP_07340314.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455]
 gi|303259750|ref|ZP_07345725.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293]
 gi|303262925|ref|ZP_07348860.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264888|ref|ZP_07350804.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397]
 gi|303266868|ref|ZP_07352746.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457]
 gi|303268905|ref|ZP_07354690.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458]
 gi|147758243|gb|EDK65245.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP14-BS69]
 gi|225727044|gb|ACO22895.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238492|gb|ADI69623.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301802021|emb|CBW34750.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
           INV200]
 gi|302598873|gb|EFL65907.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455]
 gi|302635902|gb|EFL66402.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638955|gb|EFL69415.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293]
 gi|302641523|gb|EFL71885.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458]
 gi|302643566|gb|EFL73835.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457]
 gi|302645576|gb|EFL75807.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397]
 gi|327389355|gb|EGE87700.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04375]
 gi|332075421|gb|EGI85890.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41301]
          Length = 763

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|312794911|ref|YP_004027833.1| ATP-dependent DNA helicase rep [Burkholderia rhizoxinica HKI 454]
 gi|312166686|emb|CBW73689.1| ATP-dependent DNA helicase rep (EC 3.6.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 714

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 26/153 (16%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
             ++    +       V A AGSGKT ++ Q++  L+      P  +  +T T  AAAEM
Sbjct: 5   NPAQSAAVTYLDGPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   +  +      ++                             L V T H+
Sbjct: 65  RERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVCTFHS 99

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
               I++Q      +   F+I D +    +I+E
Sbjct: 100 LGVQILRQEAAHVGLKPQFSIMDADDCFAMIQE 132


>gi|221202128|ref|ZP_03575163.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M]
 gi|221209064|ref|ZP_03582059.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2]
 gi|221171059|gb|EEE03511.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2]
 gi|221177922|gb|EEE10334.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M]
          Length = 781

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 90  GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 147

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 148 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 182

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 183 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 219


>gi|183600255|ref|ZP_02961748.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827]
 gi|188020043|gb|EDU58083.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827]
          Length = 673

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q           V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVDGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPRQIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR L+           + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEARGLI-----------ISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      I ++F++ D++    L++E     L     ++ + L++    I   
Sbjct: 87  LGLEIIKREYKALGIKANFSLFDDQDQMALLKELTFDLLE----EDKDLLQQLISSISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|281355725|ref|ZP_06242219.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548]
 gi|281318605|gb|EFB02625.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548]
          Length = 1235

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 7/188 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             + A AG+GKT+ +   V+R +L    P   LL +T+T+AAAAE++ R+ ++++     
Sbjct: 18  FLIEAAAGTGKTYNIQNLVVRAVLERDIPIEKLLVVTYTRAAAAELAGRIRQVLSGTLAA 77

Query: 93  SDEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
            ++ L  E     ++  +        + R  L T L       V TIH FC+ ++++   
Sbjct: 78  LEKRLPPESGREAQLVARALETLTSEECRKRLRTALFDFDAATVTTIHGFCQKVLRENAF 137

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
           E+ I   F+   +    +L+E+            +++    A  + L        E L +
Sbjct: 138 ESGI--LFSRELDNDCAELLEKLADDLYRREFYPDDDARHSALRQALLRQAGYTAERL-A 194

Query: 210 DIISNRTA 217
           ++   R A
Sbjct: 195 ELALRRIA 202


>gi|325473361|gb|EGC76556.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402]
          Length = 674

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 38/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +    +       + A AGSGKT ++  R+  +L      S +L LT T  AA EM 
Sbjct: 9   NPEQFKAVTTINGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFTNKAAKEMQ 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ E+                                             L V T HAF
Sbjct: 69  ERIKELTGK--------------------------------------KLQNLTVSTFHAF 90

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              +++    +    S+F+I DE    +LI+E  +  
Sbjct: 91  GVKVLRSHIDKIGWRSNFSIYDETDRNQLIKECGREL 127


>gi|148998353|ref|ZP_01825795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70]
 gi|307067730|ref|YP_003876696.1| superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200]
 gi|147755750|gb|EDK62795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70]
 gi|306409267|gb|ADM84694.1| Superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200]
          Length = 763

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|301800058|emb|CBW32653.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
           OXC141]
          Length = 763

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|168576188|ref|ZP_02722082.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016]
 gi|183577923|gb|EDT98451.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016]
          Length = 763

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|149375448|ref|ZP_01893218.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893]
 gi|149360153|gb|EDM48607.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893]
          Length = 1234

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 27/222 (12%)

Query: 22  SEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLL----------ANAHPSTLL 66
           +E +   DP       S  + A+AG+GKT  L    +RL+L              P  LL
Sbjct: 2   TEAIRKLDPLTLPLRGSQLIEASAGTGKTFTLALLYVRLVLGHRTVAEPLGEGIMPPNLL 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN--------KSDMSKAR 118
            +T T+AA  E+  R+   +T  + L         T +  K P          +D    R
Sbjct: 62  VVTFTEAATKELRDRIRARLTEAAALFAAEPDTADTTVMSKDPLVNLRNACPAADWPACR 121

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
             L+   E      V TIH +C  ++ +   ++   S F    E     L+++  +    
Sbjct: 122 RKLLLAAEWMDEAAVSTIHGWCNRMLSEHAFDSG--SLFRQTLETSQTDLLDDVVRDYWR 179

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220
           + +     EL     +       E +   + +++ +  AL +
Sbjct: 180 TFIYPMPPELMGEVLDTW--KTPESLRQSVRNLLPHVDALPV 219


>gi|154249408|ref|YP_001410233.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
 gi|154153344|gb|ABS60576.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
          Length = 656

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 39/192 (20%)

Query: 8   QEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + S   D   +  SEQ  A  +    + V A  GSGKT ++  ++  LLL    PS +L
Sbjct: 16  SKDSNIEDFFKELDSEQRRAVMESNGKSVVIAGPGSGKTRVITYKIAYLLLNGVMPSEIL 75

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T+AAA EM  R                         +   K D+            
Sbjct: 76  LVTFTRAAAREMIER------------------------AQIVTKKDL------------ 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
               +   T H  C  +++++     + S+F I DEE +K L++ A+   + S  ++   
Sbjct: 100 --SDMMAGTFHHVCNLLLRKYGSSIGLKSNFTILDEEDAKDLMKIARSRYVTSKQMNKAF 157

Query: 187 ELKKAFYEILEI 198
                 Y I   
Sbjct: 158 PTHSELYSIYSY 169


>gi|313667279|ref|YP_004049680.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
 gi|313153910|gb|ADR37760.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 889

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT  L QR L  L  +  P  +  +T T  AAAE+  R+ E +   S    
Sbjct: 3   VIVASAGTGKTTRLTQRYLEHLEQH-PPQRVAAVTFTNKAAAELRERIFEALGRGSFYD- 60

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                         P+ +   +     + +LE P    + TIH+F   +++       + 
Sbjct: 61  ------------FTPSPALAERLADYQVRVLEAP----IGTIHSFFGYLLRLTAPMLGLD 104

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            HF + D   ++    E  ++       + +E +  A  E+ +  +
Sbjct: 105 PHFEVIDPATARAWFLEEVRNLAIIEGAEVDETVTTALVELFKRRS 150


>gi|108762524|ref|YP_631669.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108466404|gb|ABF91589.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK
           1622]
          Length = 692

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 37/157 (23%)

Query: 14  IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  +    EQL A +       V A AGSGKT  L  RV R+L     P+ +L LT T 
Sbjct: 19  IDYAALLNEEQLRAVEAGEGPVLVIAGAGSGKTRTLTFRVARMLERGVPPAGILLLTFTN 78

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ RV E+  A+  +                         R +L           
Sbjct: 79  KAAREMTRRVEELAGAFVDV-------------------------RRILG---------- 103

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             T H     +++Q+      +++F + D E ++ L+
Sbjct: 104 -GTFHHAAHVLLRQYAGVLGFSTNFTVLDREDARDLM 139


>gi|261337676|ref|ZP_05965560.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM
           20093]
 gi|270277115|gb|EFA22969.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM
           20093]
          Length = 1406

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 54/242 (22%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + T  +  +   P   +  V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+
Sbjct: 5   TPTAEQAAIIEAPHDDTFLVVAGAGSGKTYTMTERIIHLIDQGVPPQHILGLTFTRKAAS 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV    T   H  D   +A   K +                           V T 
Sbjct: 65  ELLQRVTSAYTKSLHADDTSNAARFMKPE---------------------------VLTY 97

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML--DNNEELKKAFYE 194
            AF + I++++ L      +     E  + +LI +   + +  ++    +         +
Sbjct: 98  DAFFQGIVRRYGLLVGFDQNVQPLSEAGAHQLISDVVDANMQQVLEASKDYGSFSTMVND 157

Query: 195 ILEISN------------------------DEDIETLISDIISNRTALKLIFFFFSYLWR 230
           +  +SN                        D+    L+ ++I  R   + I  F S   R
Sbjct: 158 VYALSNNIASSMIGGDCHTFDQAVQRVHEWDQAFLDLLDELIGERELPEKIPNFKSVPKR 217

Query: 231 RK 232
            K
Sbjct: 218 TK 219


>gi|332181236|gb|AEE16924.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 710

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +++L  +   EQ  A +    +  + A AGSGKT ++  R+  +L      S +L LT T
Sbjct: 2   SVNLRDELNQEQYEAVTTTEGALLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV E                                              L
Sbjct: 62  NKAAREMEERVKEHTGK--------------------------------------KLQNL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T HAF   I++Q   +     +F+I DE    +LI+E  +  
Sbjct: 84  TVSTFHAFGVKILRQDIEQLGWRPNFSIYDETDRNQLIKETGREL 128


>gi|221214244|ref|ZP_03587216.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1]
 gi|221165899|gb|EED98373.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1]
          Length = 745

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 54  GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 111

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 112 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 146

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 147 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 183


>gi|298530797|ref|ZP_07018199.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510171|gb|EFI34075.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 713

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 39/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID        QL A   TR    V A AGSGKT  +V R+  L+     P ++L LT T
Sbjct: 1   MIDYEKSLNPAQLEAVTTTRGPVLVIAGAGSGKTRTIVYRLAYLVEQGVPPESILLLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA++M                                   + +A  LL   +    G 
Sbjct: 61  RKAASQM-----------------------------------LRRAGELLNREMGMVSG- 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H F   I+++F         F++ D   +++L +  +   
Sbjct: 85  --GTFHGFSYMILKKFAPALGFPQGFSVMDAADAEELFKGVRNEL 127


>gi|212550653|ref|YP_002308970.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548891|dbj|BAG83559.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 1038

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 13/180 (7%)

Query: 38  ANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           A+AGSGKT+ LV   ++ LL +    +   +L ++ TK A  EM  R+L  +   +  ++
Sbjct: 9   ASAGSGKTYTLVLEYIKCLLISDFSDYFQYILAVSFTKDATNEMKERILSELYGLALNTN 68

Query: 95  EILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           +      +     +             +A+    TI+     L + TI +F + I++   
Sbjct: 69  DSKRFRSSLQILWEEEGLHWDEKLINMRAKTAFQTIIHNYSRLNITTIDSFFQCIIRSLV 128

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFYEILEISNDEDIET 206
            E   ++HF++  E  ++++I E+  + +     DN   + L      ++    +  IE 
Sbjct: 129 RELGYSNHFSL--ETNTQRVIRESIHNVIEKSSHDNKLIKWLTIYVEHLINEGKNWRIEK 186


>gi|118594717|ref|ZP_01552064.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
 gi|118440495|gb|EAV47122.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
          Length = 1074

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 92/195 (47%), Gaps = 19/195 (9%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           +  A++P +S  V+A AGSGKT +LV R+L+LL     PS ++ +T TK AAA+M  +++
Sbjct: 11  RERATNPLQSFVVNAPAGSGKTTLLVTRILKLLTIIEKPSEIIAITFTKKAAAQMRRKLI 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +++    +  ++ +     K +    N       R      +E+   + + TI +    I
Sbjct: 71  DVMGKNENKINDEVRTLALKAKENAIN-------RGWEANFIES---MDIITIDSLASKI 120

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +++ P+   ++S F     E   +  EEA K T+  +  ++ E         L     + 
Sbjct: 121 IRKAPI---LSSSFFANITEDPSEQYEEAAKRTILEMNENDME-----LITFLNYDT-KK 171

Query: 204 IETLISDIISNRTAL 218
           I++ + +++  R   
Sbjct: 172 IKSYLIELLKKRDQW 186


>gi|53724405|ref|YP_104505.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344]
 gi|121598749|ref|YP_994582.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1]
 gi|124385848|ref|YP_001027516.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229]
 gi|126450982|ref|YP_001082587.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247]
 gi|238561590|ref|ZP_00441881.2| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4]
 gi|254174927|ref|ZP_04881588.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399]
 gi|254201583|ref|ZP_04907947.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH]
 gi|254206917|ref|ZP_04913268.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU]
 gi|254357473|ref|ZP_04973747.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280]
 gi|52427828|gb|AAU48421.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344]
 gi|121227559|gb|ABM50077.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1]
 gi|124293868|gb|ABN03137.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229]
 gi|126243852|gb|ABO06945.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247]
 gi|147747477|gb|EDK54553.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH]
 gi|147752459|gb|EDK59525.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU]
 gi|148026537|gb|EDK84622.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280]
 gi|160695972|gb|EDP85942.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399]
 gi|238524389|gb|EEP87822.1| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4]
          Length = 700

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|42561294|ref|NP_975745.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492792|emb|CAE77387.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|301321313|gb|ADK69956.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 722

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 44/226 (19%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L+    S+QL A  +  +   + A AGSGKT ++  ++  L+   +  P+ +L +T T  
Sbjct: 6   LLDLLNSQQLAAVLNTDKPVRIIAGAGSGKTRVITTKIAYLIEKKDIDPTRILAVTFTNK 65

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RVL+                ITK Q K P                       +
Sbjct: 66  AAKEMKERVLQ----------------ITKNQKKSP----------------------FI 87

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T HA+C  +++       +   F I D +  K++I+ A K +   +  ++ +   K   
Sbjct: 88  STFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKESNIELSENDKKTFDKKIL 147

Query: 194 EILEISNDE--DIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
             ++   +E  D +  I +  S  +R +  +   +   L +   I+
Sbjct: 148 YKIKEWKEELVDPDEAILNANSTYDRNSAIIYKLYQETLLKNNSID 193


>gi|86132275|ref|ZP_01050870.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
 gi|85817194|gb|EAQ38377.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
          Length = 778

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 37/157 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++        +  V A AGSGKT +L  R+  L+        +L LT T  AA EM 
Sbjct: 13  NDAQRAPTLHKDGALIVIAGAGSGKTRVLTMRIAYLMSQGVDAFNILSLTFTNKAAREMK 72

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  I+                                            L + T H+ 
Sbjct: 73  KRIAGIVGN-------------------------------------NEAKNLWMGTFHSI 95

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              I++    +    S+F I D + S++LI    K  
Sbjct: 96  FAKILRIEADKLGYPSNFTIYDTQDSQRLISAIIKEM 132


>gi|281425747|ref|ZP_06256660.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302]
 gi|281400155|gb|EFB30986.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302]
          Length = 761

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 39/160 (24%)

Query: 19  QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76
           +    Q  A +       V A AGSGKT +L  ++  L+      P ++L LT T  AA 
Sbjct: 4   ELNEGQRAAVEYCDGPQLVIAGAGSGKTRVLTYKIAYLIDEKQFEPWSILALTFTNKAAN 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ +++                             + R+L +            T 
Sbjct: 64  EMRSRIGKVVGQ--------------------------DRTRYLYM-----------GTF 86

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+    I++    +   T  F I DE  S+ L++   K  
Sbjct: 87  HSIFSRILRIEAEKLGYTKQFTIYDEADSRSLLKNIIKEM 126


>gi|160902262|ref|YP_001567843.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
 gi|160359906|gb|ABX31520.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
          Length = 706

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 41/186 (22%)

Query: 16  LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
             ++   EQ  A      RS  V A  GSGKT ++  ++  LL     P  +L +T T+A
Sbjct: 61  FENELDEEQREAVIKSEGRSIIV-AGPGSGKTRVITYKIAYLLNNGVEPENILLVTFTRA 119

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  +                                             +  
Sbjct: 120 AAREMIERVKNVTNR--------------------------------------NIDKMLA 141

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C +I++++    +  ++++I D+E SK L++ AK   +  I  +     ++   
Sbjct: 142 GTFHHVCNSILRKYATLLDYKNNYSILDKEDSKDLLKMAKSEYIKEISDNYKLPKEEVIM 201

Query: 194 EILEIS 199
           +I+  S
Sbjct: 202 KIISYS 207


>gi|166157034|emb|CAO79491.1| putative UvrD/REP helicase [uncultured candidate division WWE3
           bacterium EJ0ADIGA11YD11]
          Length = 710

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 44/198 (22%)

Query: 18  SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++   EQL A    +    V A AG+GKT ++ +R+  L+   N  P  +L LT T+ AA
Sbjct: 9   TELNEEQLKAVKHKSGPVLVVAGAGTGKTRVITERIRYLIKEKNVDPQEILALTFTEKAA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +I+                                              V T
Sbjct: 69  QEMVDRVGDIMPLGYEEP--------------------------------------WVYT 90

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM--LDNNEELKKAFY 193
            H+F + I+++  +E  I   + I        L+ +            L N  +   A  
Sbjct: 91  FHSFADRILKEKGIEIGIDPSYKILSPSDQWLLLRKNLFDLKLKYFRPLGNPTKFISAIL 150

Query: 194 EILEISNDEDI--ETLIS 209
             +    DE++  E L+ 
Sbjct: 151 TFISRLQDENVSPEELLE 168


>gi|168494521|ref|ZP_02718664.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC3059-06]
 gi|225854583|ref|YP_002736095.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA]
 gi|183575566|gb|EDT96094.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC3059-06]
 gi|225724045|gb|ACO19898.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA]
          Length = 763

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + +  I+ 
Sbjct: 136 ERTILGTISNAKNNLIDD 153


>gi|257094702|ref|YP_003168343.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047226|gb|ACV36414.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 704

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 43/173 (24%)

Query: 15  DLISQTKSEQLLAS--------DPT------RSAWVSANAGSGKTHILVQRVLRLLLANA 60
           D +++  + Q  A+        DP+      R+  + A AGSGKT  L  RV  L+   A
Sbjct: 14  DPLARLNAAQRAAATFGIGRPADPSGEAPDSRALLIIAGAGSGKTSTLAHRVAHLVAQGA 73

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  +L LT ++ AA+EM+ RV  I+                               R  
Sbjct: 74  DPGRILLLTFSRRAASEMTRRVERILVR-----------------------------RAA 104

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
             T   TP      T H     +++++     +   F I D + S  L+   +
Sbjct: 105 DRTPAGTPALAWSGTFHGIGARLLREYAGRIGLDPAFTIHDRQDSGDLMNLVR 157


>gi|115524887|ref|YP_781798.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115518834|gb|ABJ06818.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
          Length = 700

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 58/172 (33%), Gaps = 35/172 (20%)

Query: 11  SETIDLISQTKSEQLLASDPT------RSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           S     +     +Q  A +            V A AGSGKT+ L  RV  LL+  A P  
Sbjct: 17  SPIAAYLDDLNPQQRCAVEHGIDGSLASPLLVIAGAGSGKTNTLAHRVAHLLVHGADPRR 76

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T ++ AA+EM  RV  I          I++  ++                      
Sbjct: 77  LLLMTFSRRAASEMIRRVERIARKAIGEPAAIMTGAMS---------------------- 114

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                     T H     ++++   +  +   F I D E +  LI   +   
Sbjct: 115 -------WAGTFHGVGARLLRERAEQLGLDPGFTIHDREDAADLINLVRHQL 159


>gi|149177805|ref|ZP_01856404.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148843295|gb|EDL57659.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 657

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 37/161 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L S   +++  AS  +    V A AG+GKT ++  R++ L+     P  +L +T T  AA
Sbjct: 13  LASLNPAQREAASTLSGPLLVLAGAGTGKTRVITYRMVELIRTGVAPDKILSVTFTNKAA 72

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+  ++                                         P    + T
Sbjct: 73  KEMQERMAALLGK-------------------------------------RLPAKPFIST 95

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+ C  I+++          F I D    +     A +  
Sbjct: 96  FHSLCVRILREEISLLGYPEKFVIYDRGDQESAARTALREI 136


>gi|219685122|ref|ZP_03539942.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04]
 gi|219673218|gb|EED30237.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04]
          Length = 658

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 65/232 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S  + +    +    +  + A AGSGKT ++  R+  LLL       +L LT T  AA E
Sbjct: 9   SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ +I+ +                                          L V T H
Sbjct: 69  MKDRIKKILKSP--------------------------------------LSNLMVSTFH 90

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175
           AF    +++          F+I D+     L++E                          
Sbjct: 91  AFGLFFLKENYKLLGYKKSFSIYDDNDRISLLKEILLDEGLLNKKVSLNSLSNTISLLKN 150

Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIF 222
                + + + +  + K + E L + N  D + LI    +++SN + ++  +
Sbjct: 151 GILTLNDLKEEDISIFKLYEERLRLYNSFDFDDLILKPKELLSNNSDIRSKY 202


>gi|254246736|ref|ZP_04940057.1| UvrD/REP helicase [Burkholderia cenocepacia PC184]
 gi|124871512|gb|EAY63228.1| UvrD/REP helicase [Burkholderia cenocepacia PC184]
          Length = 775

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 84  GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 141

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 142 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 176

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 177 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 213


>gi|134294278|ref|YP_001118013.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
 gi|134137435|gb|ABO53178.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
          Length = 695

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|330995679|ref|ZP_08319577.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329574738|gb|EGG56299.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 1082

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 16/210 (7%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93
           A+AGSGKT  L  + ++ L+        S +L +T T  A  EM  R+L+ +   W  L 
Sbjct: 10  ASAGSGKTFTLAIQYIKTLIEQESRHAYSHILAVTFTNKATTEMKDRILQQLYGIWKGLP 69

Query: 94  D-----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E L  E+     + P +   S+A   L  IL      +V+TI +F +++++   
Sbjct: 70  SSTNYLESLQKELRADSIELPEEEIRSRAGAALCHILHDYNRFRVETIDSFFQSVLKNLA 129

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
            E ++T++  +  +   K+++  A    +  + L            ILE  ND       
Sbjct: 130 HELSLTANLKV--DLNDKEVLHAAVDRIMERLHLTP-----TVLNWILEYVNDRISNNER 182

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            DI     +     F  +YL R   + + L
Sbjct: 183 WDIAREVKSFAAWIFKEAYLAREHEMREVL 212


>gi|237814293|ref|YP_002898744.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346]
 gi|237505661|gb|ACQ97979.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346]
          Length = 695

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|311696604|gb|ADP99477.1| exodeoxyribonuclease V, beta subunit [marine bacterium HP15]
          Length = 1234

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 23/209 (11%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL---------CLTHTKAAA 75
           LA     SA + A+AG+GKT  +    +RL+L     P + L          +T T+AA 
Sbjct: 15  LALTLNGSALIEASAGTGKTFTIAILYVRLVLGQGQSPDSPLQNLLPPNLLVVTFTEAAT 74

Query: 76  AEMSHRVLEIITA----WSHLSDEILSAEITKI-----QGKKPNKSDMSKARHLLITILE 126
            E+  R+   +T     +S   DE      T +         P+ +   + R  L+   E
Sbjct: 75  KELRDRIRTRLTQAAEVFSDAPDEPNPPAETALIYQLRDESYPDPASWPECRKKLLLAAE 134

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 V TIH+FC  ++ +   ++   S F +  E    +L++E  +    + +     
Sbjct: 135 WMDEAAVSTIHSFCNRMLSEHAFDSG--SLFKLTLETDQSELLDEVARDYWRTFVYPLPP 192

Query: 187 ELKKAFYEILEISND--EDIETLISDIIS 213
            L        +   D  + +  LI D +S
Sbjct: 193 ALMDEALSHWKTPGDLRQGVRNLIDDPLS 221


>gi|253991620|ref|YP_003042976.1| ATP-dependent DNA helicase Rep [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783070|emb|CAQ86235.1| Rep helicase, a single-stranded DNA dependent ATPase [Photorhabdus
           asymbiotica]
          Length = 675

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+ +    P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRICGYQPRHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                       +   GL + T H 
Sbjct: 64  KERVAQTLGR-------------------------------------QEAKGLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ DE+    L+++     L     ++ E L+K    I   
Sbjct: 87  LGLEIIKREYKALGMKSNFSLFDEQDQMALLKDLTADLLE----EDKELLQKLIASISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|221231829|ref|YP_002510981.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC
           700669]
 gi|220674289|emb|CAR68831.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC
           700669]
          Length = 763

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + +  I+ 
Sbjct: 136 ERTILGTISNAKNNLIDD 153


>gi|110834680|ref|YP_693539.1| exodeoxyribonuclease V subunit beta [Alcanivorax borkumensis SK2]
 gi|110647791|emb|CAL17267.1| Exodeoxyribonuclease V beta chain [Alcanivorax borkumensis SK2]
          Length = 1206

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 15/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  L    LRL+L +           P  +L +T T+AA  E+  R+ + 
Sbjct: 18  LIEASAGTGKTFTLAALYLRLVLGHGGENGFSRPLLPPEILVVTFTEAATEELRERIRDR 77

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR----HLLITILETPGGLKVQTIHAFCE 141
           +   + +  +  +     +     +    ++ R      L    +      + TIH FC 
Sbjct: 78  LADAARIFADPHAEADDPVLAALLSDYSENEQRTSCAQRLDAAAQWMDEAAIYTIHGFCN 137

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            +++Q   ++   S F++  +E + +  + A +    S++  
Sbjct: 138 RMLKQHAFDSG--SLFSLELQEDASEEQQLAARDYWRSVISQ 177


>gi|303237389|ref|ZP_07323959.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302482776|gb|EFL45801.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 1112

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95
           A+AGSGKT  L    + LL+ + +    +L +T T  A  EM  R+L  +   +  L   
Sbjct: 13  ASAGSGKTFTLAVEYISLLVKDPNNYRQILAVTFTNKATQEMKMRILSQLFGIAKGLKSS 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               +  K +      +  S A   L  ++      ++ TI AF + I++    E  +T+
Sbjct: 73  DAYLQQVKNKTGLNEATIKSNATTALTLLIHKYNEFRIHTIDAFFQQILRNLAHELGLTA 132

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +  +  +  +K +  +A    +  +  + 
Sbjct: 133 NLKV--DLNNKDIEGKAVDQMIEELQEEQ 159


>gi|126668208|ref|ZP_01739169.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17]
 gi|126627357|gb|EAZ97993.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17]
          Length = 1241

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 24/202 (11%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----------TLLCLTHTKAAAAEMS 79
             S  + A+AG+GKT  +    +RL+L +  P             LL +T T AA  E+ 
Sbjct: 19  NGSTLIEASAGTGKTFTIAILYVRLVLGHGQPEGGALAAGLVPPNLLVVTFTDAATKELR 78

Query: 80  HRVLEIITAWSHL-----SDEILSAEITKIQGKK----PNKSDMSKARHLLITILETPGG 130
            R+   +T  + +      +   +AE   I   +    P+ +     R  L+   E    
Sbjct: 79  DRIRIRLTQAAEVFSNVAGNTTPTAETALIHQLRDDSYPDPATWPDCRKKLLLAAEWMDE 138

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             V TIHA+C  ++ +   ++   S F +  E     L++E  +    + +   + EL  
Sbjct: 139 AAVSTIHAWCNRMLSEHAFDSG--SLFRLTLETDQSSLMDEVVRDYWRTFIYPLSPELMD 196

Query: 191 AFYEILEISNDEDIETLISDII 212
              +       + ++  + +++
Sbjct: 197 EVID--HWKTPDQLQKAVRNLL 216


>gi|306829578|ref|ZP_07462768.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249]
 gi|304428664|gb|EFM31754.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249]
          Length = 763

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                        G  P   D               
Sbjct: 59  TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I++          +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRHDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|270297067|ref|ZP_06203266.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273054|gb|EFA18917.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1112

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 13/165 (7%)

Query: 27  ASDPTRSAWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           A++        A+AGSGKT  L V+ +  L++       +L +T T  A AEM  R+L  
Sbjct: 10  AANYMELLVYKASAGSGKTFTLAVEYIKHLIINPHAYRQILAVTFTNKATAEMKERILTQ 69

Query: 86  ITAW------SHLSDEILSAEITKIQGK----KPNKSDMSKARHLLITILETPGGLKVQT 135
           +         S    E +     KI+G+      +K    +A   L  +L      +V+T
Sbjct: 70  LYGIWKGAPSSEAYLERIKNYKLKIKGEGGGGLTDKEIRQRAGIALQYMLHDYSRFRVET 129

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           I +F +++M+    E  ++ + +I  E  + +++ +A  S +  +
Sbjct: 130 IDSFFQSVMRNLARELELSPNLSI--ELNNSEVLSDAVDSLIEKL 172


>gi|223939230|ref|ZP_03631111.1| UvrD/REP helicase [bacterium Ellin514]
 gi|223892062|gb|EEF58542.1| UvrD/REP helicase [bacterium Ellin514]
          Length = 692

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 55/163 (33%), Gaps = 39/163 (23%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D   +   +Q  A + P   + V A AGSGKT  L  RV  LL        +L LT T 
Sbjct: 18  VDYARELNEQQHAAVTAPPGPSLVIAGAGSGKTRTLTFRVGFLLEQGIPADRILLLTFTN 77

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV +++                                       +    L 
Sbjct: 78  KAAREMMRRVSDLLG--------------------------------------QDLPSLW 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             T H+    I++Q          F+I D E +K L++     
Sbjct: 100 GGTFHSIGNRILRQHAPLLGYQRDFSIMDREDAKDLVDACVAE 142


>gi|15836655|ref|NP_297343.1| DNA-dependent helicase II [Xylella fastidiosa 9a5c]
 gi|9104818|gb|AAF82863.1|AE003859_4 DNA helicase II [Xylella fastidiosa 9a5c]
          Length = 728

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLT 69
           S  +D ++Q + E + A+       + A AGSGKT +L  R++ L  +      +++ +T
Sbjct: 4   SHVLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVHGVPTHSMMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA E+  R+                                       + +     
Sbjct: 62  FTNKAAGEIQQRID--------------------------------------LQLRHGKR 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           G+ + T H+    +++    +A +  +F + D +   +L++   +S 
Sbjct: 84  GMWIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 130


>gi|325279393|ref|YP_004251935.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
 gi|324311202|gb|ADY31755.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
          Length = 1054

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 38  ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L     R +  + A    +L +T T  A  EM  R++  +   +      
Sbjct: 7   ASAGSGKTFALTLEYFRTIFASPAEYKNILAVTFTNKATEEMKSRIINELHRLADGKTSD 66

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
               + +  G   ++   ++A  L   +L   G L V TI  F + I++ F  E  I   
Sbjct: 67  YGEALKQEFGFT-DEQLKNRAVLLRTMLLHDYGRLAVTTIDRFFQRIIKAFTRELGIFPG 125

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + +  E  S  ++ +A    +  +   +N  LK    E++  + +E 
Sbjct: 126 YNV--ELDSDFVLLKAVDKVMQQV--KDNPGLKNWISELMSSNVEEG 168


>gi|323527814|ref|YP_004229967.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323384816|gb|ADX56907.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 699

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++Q      +   F+I D +    +I+E   ST
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138


>gi|257126152|ref|YP_003164266.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
 gi|257050091|gb|ACV39275.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
          Length = 735

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 56/168 (33%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S  +D +++   ++  A        + A AGSGKT  +  R+  ++      P  +L L
Sbjct: 1   MSSILDELNE--EQRKAAEKIEGPVLILAGAGSGKTRTVTYRIAHMVKEIGISPLNILAL 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +I                                          
Sbjct: 59  TFTNKAAREMKERAAALIG--------------------------------------HEA 80

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             L V T H+F   +++ +        +F I D +  K +I + KK  
Sbjct: 81  NNLVVSTFHSFSVRLLKTYSERIGYGRNFNIYDVDDQKSIITKIKKEM 128


>gi|170698717|ref|ZP_02889782.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
 gi|171321304|ref|ZP_02910265.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
 gi|170136342|gb|EDT04605.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
 gi|171093411|gb|EDT38595.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
          Length = 695

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|254194688|ref|ZP_04901119.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13]
 gi|254298751|ref|ZP_04966202.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e]
 gi|157808603|gb|EDO85773.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e]
 gi|169651438|gb|EDS84131.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13]
          Length = 733

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 42  GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 99

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 100 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 134

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 135 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 171


>gi|15639096|ref|NP_218542.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025336|ref|YP_001933108.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema
           pallidum subsp. pallidum SS14]
 gi|3322363|gb|AAC65097.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189017911|gb|ACD70529.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059520|gb|ADD72255.1| ATP-dependent helicase PcrA [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 657

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 38/161 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L +    ++   +       + A AGSGKT ++  R+  +L      S +L LT T  AA
Sbjct: 2   LSTLNPEQRRAVTTLEGPLLIIAGAGSGKTRVITARIAYMLECGILQSRILALTFTNKAA 61

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EMS R+  +       +                                       V T
Sbjct: 62  HEMSERIKALTGKPLRNT--------------------------------------TVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            HAF   I+++         +F+I DE   + LI EA K  
Sbjct: 84  FHAFGVTILREHIHVLGWRKNFSIYDENDKRALIREAAKEV 124


>gi|325524957|gb|EGD02885.1| UvrD/REP helicase [Burkholderia sp. TJI49]
          Length = 696

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|167847823|ref|ZP_02473331.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei B7210]
          Length = 639

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|2462092|emb|CAA72103.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 10987]
          Length = 254

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 32/177 (18%)

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
               LL +T T AAA EM +R+ E +                K+   +P    + K   L
Sbjct: 5   QVDRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSL 49

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           L           + TIH+FC  +++ +    ++   F IA++ +++ L EE     L   
Sbjct: 50  L-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEE 102

Query: 181 MLDNNEELKKAFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
               +  +   F+E+++  ++D   + L       R  L L     ++    K ++K
Sbjct: 103 YGIEDNTI---FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 150


>gi|172059215|ref|YP_001806867.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
 gi|171991732|gb|ACB62651.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
          Length = 695

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|118581858|ref|YP_903108.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
 gi|118504568|gb|ABL01051.1| ATP-dependent DNA helicase PcrA [Pelobacter propionicus DSM 2379]
          Length = 762

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 41/156 (26%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D +      Q  A         + A AGSGKT ++  R+  L+      P  +L +T T
Sbjct: 1   MDFVKHLNQPQKSAVLHGEGPLLILAGAGSGKTRVITHRIAHLIHNHGVRPWNILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EMS RV  ++       D  L                                  
Sbjct: 61  NKAAREMSERVSRLLGG----GDAPL---------------------------------- 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167
            + T HA C  I+++        S FAI DE   ++
Sbjct: 83  -IATFHAACGRILRREIHHLGFDSSFAIYDERDCER 117


>gi|168491981|ref|ZP_02716124.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573779|gb|EDT94307.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC0288-04]
          Length = 763

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+ C  I+++         +F I D  + + L+    K  L  + LD  +  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKRN 135

Query: 189 KKAFYEILEISNDEDIET 206
           ++     +  + ++ I+ 
Sbjct: 136 ERTILGTISNAKNDLIDD 153


>gi|162148662|ref|YP_001603123.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787239|emb|CAP56832.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
          Length = 699

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 39/172 (22%)

Query: 15  DLISQTKSEQLLASDPTR----------SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           D +++    Q  A                  V A AGSGKT+ L  RV  L+     P  
Sbjct: 13  DPLARLNPAQREAVTHGAGVAPDVGGSPPLLVIAGAGSGKTNTLAHRVAHLIATGTDPRR 72

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT ++ A+ EM+ RV  I  A        L+  +                       
Sbjct: 73  ILLLTFSRRASTEMTRRVERICRAVLGDKAGPLADAL----------------------- 109

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                     T H+    +++++  +  +   F+I D E S  L+   +   
Sbjct: 110 ------AWAGTFHSIGARLLREYAEQIGMDPAFSIHDREDSADLMNLVRHDL 155


>gi|115350193|ref|YP_772032.1| UvrD/REP helicase [Burkholderia ambifaria AMMD]
 gi|115280181|gb|ABI85698.1| UvrD/REP helicase [Burkholderia ambifaria AMMD]
          Length = 695

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|304321353|ref|YP_003854996.1| DNA helicase II [Parvularcula bermudensis HTCC2503]
 gi|303300255|gb|ADM09854.1| DNA helicase II [Parvularcula bermudensis HTCC2503]
          Length = 775

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 44/201 (21%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           +  +    ++ ++  + E +L ++      + A AG+GKT  L  R+  LL++  A+P  
Sbjct: 15  TASDAPAYLEGLNPPQKEAVLTTE--GPVLMLAGAGTGKTRALTTRLAHLLISGRANPWD 72

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           LL +T T  AA EM  RV  ++                                      
Sbjct: 73  LLAVTFTNKAAREMRERVGVLVGDQVE--------------------------------- 99

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
               G   + T H+    I+++      +T  F I D +   +L     K  +++  +D 
Sbjct: 100 ----GMRWMGTFHSVAALILRRHAELVGLTPAFTIIDTDDQIRL----CKQVISAAGVDE 151

Query: 185 NEELKKAFYEILEISNDEDIE 205
                +    +L+   +  + 
Sbjct: 152 KRWPGRGLAGVLDAWKNRGLR 172


>gi|57242577|ref|ZP_00370515.1| helicase, putative [Campylobacter upsaliensis RM3195]
 gi|57016862|gb|EAL53645.1| helicase, putative [Campylobacter upsaliensis RM3195]
          Length = 909

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A    +L +T TK A  EM  RV+E    +    
Sbjct: 8   LALEASAGSGKTFALSMRFVALILNGAKIDEILAITFTKKATNEMKKRVIENFLTFDK-- 65

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            E  + E+ K+ GK   +    +       + +    LK+ T  A    I++ F L   +
Sbjct: 66  KEAETKELCKLLGKDKEELIRLRDAKKEEFLRKN---LKIYTFDALFSQILRSFALNLGL 122

Query: 154 TSHFAIADEEQSKK 167
            S F   +  Q  +
Sbjct: 123 MSDFESVENSQDVR 136


>gi|76809077|ref|YP_331538.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b]
 gi|76578530|gb|ABA48005.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b]
          Length = 733

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 42  GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 99

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 100 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 134

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 135 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 171


>gi|325972063|ref|YP_004248254.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324027301|gb|ADY14060.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 1104

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 28/162 (17%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           ++  + QL A     +  VSA AGSGKT +L  R LRL+L   A    +L LT T+ AA 
Sbjct: 13  ARLDAHQLEAVHCDVNCVVSAGAGSGKTTVLSYRFLRLVLEGKAQVGEILTLTFTRKAAR 72

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   +                             K    ++  L T     + T+
Sbjct: 73  EMQERIHRHLLCC--------------------------KNDERIVGQLATFSEASISTL 106

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            +FC  I++   +   I   F + D+EQ+ +         L 
Sbjct: 107 DSFCSQIVRSDSIRYGIAQDF-VIDDEQNLRNARRCATELLD 147


>gi|315637850|ref|ZP_07893040.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter
           upsaliensis JV21]
 gi|315482091|gb|EFU72705.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter
           upsaliensis JV21]
          Length = 909

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 16/219 (7%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AGSGKT  L  R + L+L  A    +L +T TK A  EM  RV+E    +    
Sbjct: 8   LALEASAGSGKTFALSMRFVALILNGAKIDEILAITFTKKATNEMKKRVIENFLTFDK-- 65

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            E  + E+ K+  K   +    +       + +    LK+ T  A    I++ F L   +
Sbjct: 66  KEAETKELCKLLAKDKEELIRLRDAKKEEFLRKN---LKIYTFDALFSQILRSFALNLGL 122

Query: 154 TSHFA-IADEEQSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL-- 207
            S F  I + +  ++        ++    +  +   +E +  F E+  +  +   ++L  
Sbjct: 123 MSDFESIENSQDVRRTFLKKLSKEELKKLATYILKIDEKEHFFSELESLYQNAYFKSLNI 182

Query: 208 -----ISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                +S + S    L+     F     +   +     +
Sbjct: 183 TNQPGLSKLQSAYDDLRKYCLSFDNKNLKSNFKSEKLHL 221


>gi|304312501|ref|YP_003812099.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains
           helicaseand exonuclease domains) [gamma proteobacterium
           HdN1]
 gi|301798234|emb|CBL46456.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains
           helicaseand exonuclease domains) [gamma proteobacterium
           HdN1]
          Length = 1272

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 12/162 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-------PSTLLCLTHTKAAAAEMSHRVLEIIT 87
            + A+AG+GKT  +    LRL+L +         P  +L +T T+AAA E+  R+   + 
Sbjct: 25  LIEASAGTGKTFTIAALYLRLILGHQSTLGRPLTPRDILVVTFTQAAAEELRGRIRARLY 84

Query: 88  AWSHLSDEIL---SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
             +     +     + +  +  +   +    +A +LL    E      + TIHA+C+ ++
Sbjct: 85  EGAQAMRGVELPSESILCALYQEYEAQGMRERAGYLLQQAAENMDEAAIYTIHAWCQQVL 144

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           QQ    +   + F    ++  K L+E   +    S      E
Sbjct: 145 QQHAFASG--ASFGKTLQQDEKVLLEVCVRDYWRSFFYSQGE 184


>gi|281420135|ref|ZP_06251134.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM
           18205]
 gi|281405935|gb|EFB36615.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM
           18205]
          Length = 1070

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 10/172 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L +  + L++AN A   T+L +T T  A  EM  R+L  +   +H   E 
Sbjct: 10  ASAGSGKTFTLAREYMTLVIANPASYRTILAVTFTNKATEEMKMRILGKLYEIAHGLPEA 69

Query: 97  LS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                +I +      +K     A   L  ++      +V TI  F +++++    E ++T
Sbjct: 70  NDYVNQIQQALPYLSSKQIQKNAESALHLLIHNYNYFRVMTIDTFFQSVLRNLARELDLT 129

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           ++  I  E    ++ + A    + S+     E+  +  + I++   +   + 
Sbjct: 130 ANLRI--ELNDYQIEQHAVDELIESL-----EDTDRLLFWIMDYIKENIDDD 174


>gi|298706895|emb|CBJ25859.1| ATP-dependent DNA helicase [Ectocarpus siliculosus]
          Length = 1196

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 84/217 (38%), Gaps = 46/217 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS- 63
           ++F   S   D +++++ + + A     +  V A  GSGKT +L +R+  L+     P+ 
Sbjct: 74  DAFYGASALDDELNESQRDAVFAE--VGAVRVVAGPGSGKTRVLTRRIAHLVRNVGAPAW 131

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           ++L +T TK A+ EM  RV + +                                     
Sbjct: 132 SILAVTFTKKASEEMRARVRKTVGE----------------------------------- 156

Query: 124 ILETPGGLKVQTIHAFCEAIMQQF-----PLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
             +  G + + T H+ C  ++++       +   +   F+I D E S++L+ +  K    
Sbjct: 157 --DVSGQVALGTFHSICARLLRRHGDALPAVVPGLDGRFSIFDTEDSRRLLTDIIKEMGQ 214

Query: 179 SIMLDNNEELKKAFYEI-LEISNDEDIETLISDIISN 214
            I       ++ +  ++  +    +DI     D++  
Sbjct: 215 DIKEVKPNMMRSSISKLKSQGLGPQDIAKKSEDMLER 251


>gi|104779936|ref|YP_606434.1| exonuclease V subunit beta [Pseudomonas entomophila L48]
 gi|95108923|emb|CAK13619.1| exonuclease V, beta subunit [Pseudomonas entomophila L48]
          Length = 1223

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 79/214 (36%), Gaps = 31/214 (14%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFARELLPPQILVVTFTDAATKELRERI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140
              +   +    + L      +   + +  +    +  + L   ++      V TIH +C
Sbjct: 75  RTRLAEAARFFRDELDDADPLLHQLRDDYPQEHWPRCANRLEIAVQWMDEAAVSTIHGWC 134

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE------------- 187
           + ++++   ++   S F  + E    +L+ +  +            E             
Sbjct: 135 QRMLREHAFDSG--SLFTQSLETDHSELLGQVMRDYWRRFCYGMRGEALAWVRGNWGSPD 192

Query: 188 -----LKKAFYEILEISNDEDIETLISDIISNRT 216
                ++  F  + +  +D + + LI   +  RT
Sbjct: 193 ALLPRIRPLFGRVRDAQDDAEPQALIEATLRQRT 226


>gi|295677216|ref|YP_003605740.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295437059|gb|ADG16229.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 731

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 35/173 (20%)

Query: 12  ETIDLISQTKSEQLLASDPTRS--------AWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +T   +++    Q  A +              V A AGSGKT+ L  RV  L++  A P 
Sbjct: 31  DTAAWLAKLNDAQREAVEYGTDTPDALPGALLVIAGAGSGKTNTLAHRVANLVVKGADPQ 90

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT ++ AA EM+ RV  I  A +                          AR  L  
Sbjct: 91  RILLLTFSRRAALEMTRRVTRITGAAATSVG----------------------ARAALAQ 128

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            L         T H+    +++++     +   F I D E S  L+   +   
Sbjct: 129 GLT-----WAGTFHSVGARLLREYADLIGLAPAFTINDREDSADLMNLVRHEL 176


>gi|260889954|ref|ZP_05901217.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254]
 gi|260860560|gb|EEX75060.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254]
          Length = 735

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 56/168 (33%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S  +D +++   ++  A        + A AGSGKT  +  R+  ++      P  +L L
Sbjct: 1   MSSILDELNE--EQRKAAEKIEGPVLILAGAGSGKTRTVTYRIAHMVKEIGISPLNILAL 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +I                                          
Sbjct: 59  TFTNKAAREMKERATALIG--------------------------------------HEA 80

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             L V T H+F   +++ +        +F I D +  K +I + KK  
Sbjct: 81  NNLVVSTFHSFSVRLLKTYSERIGYGRNFNIYDVDDQKSIITKIKKDM 128


>gi|254467915|ref|ZP_05081321.1| UvrD/REP helicase, putative [beta proteobacterium KB13]
 gi|207086725|gb|EDZ64008.1| UvrD/REP helicase, putative [beta proteobacterium KB13]
          Length = 1015

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 15/207 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +S    +  +     +S  V A AGSGKT +L QR ++LL     P  +L +T T  AAA
Sbjct: 1   MSSNDIQNRIKCLDLKSIIVQAPAGSGKTELLTQRFIKLLAHVNSPREILAVTFTNKAAA 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM +R+   +   +   ++     I  +           +     IT+ E      + TI
Sbjct: 61  EMKNRITNYLQNKTTPKNDTTKKLIDLLN---------KEIARRGITVDEIISEFNILTI 111

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            A  + I+   PL        +I ++     +  E  K  +     ++N +        L
Sbjct: 112 DALNQQIINSTPLLTQYGYQSSIIEDP--SPIHSEIIKKVI---YAESNSDHIHKMLHTL 166

Query: 197 EISNDEDIETLISDIISNRTALKLIFF 223
            I     +E  + ++++NR       F
Sbjct: 167 NIEF-PQLEKYLLELMTNRDKWIHYIF 192


>gi|206890688|ref|YP_002249662.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742626|gb|ACI21683.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 699

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           L     ++Q           V A AGSGKT ++  +   L       PS++  +T T  A
Sbjct: 6   LRDLNPAQQEAVVYCEGPLLVLAGAGSGKTRVITYKYAYLTKSKGLLPSSIFTVTFTNKA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ ++                                               + 
Sbjct: 66  ADEMKERIFKMCNG--------------------------------------NWKNTWIG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C  I++           F I D++    LI+   K  
Sbjct: 88  TFHSLCVRILRAHIDNIGYKRDFIIYDDDDQAGLIKRILKDL 129


>gi|196228173|ref|ZP_03127040.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196227576|gb|EDY22079.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 678

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 37/164 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L      ++           + A AG+GKT ++  RV  L+     PS +L +T T  AA
Sbjct: 6   LFDLNPEQEQAVRTTEGPLLILAGAGTGKTRVITMRVAFLISQGVDPSHILAVTFTNKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ ++I                                            + + T
Sbjct: 66  DEMRERLAKMIEP-------------------------------------SQAKKVTMST 88

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            HA C  I++Q   +     +F+I DE     LI++    T A 
Sbjct: 89  FHALCVRILRQDIEKLGWKKNFSIYDEGDQMGLIKKIITRTAAK 132


>gi|78064806|ref|YP_367575.1| UvrD/REP helicase [Burkholderia sp. 383]
 gi|77965551|gb|ABB06931.1| UvrD/REP helicase [Burkholderia sp. 383]
          Length = 695

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|161523326|ref|YP_001578338.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|160340755|gb|ABX13841.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
          Length = 721

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 30  GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 87

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 88  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 122

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 123 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 159


>gi|206558483|ref|YP_002229243.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315]
 gi|198034520|emb|CAR50385.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315]
          Length = 695

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|149184424|ref|ZP_01862742.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148831744|gb|EDL50177.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 196

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
              ++           + A AG+GKT  L  R+  L+    A PS +LC+T T  AA EM
Sbjct: 24  NAPQREAVLTTEGPVLMLAGAGTGKTAALTARLAHLIATRRAWPSEILCVTFTNKAAREM 83

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   I                                          G   + T H+
Sbjct: 84  RERVGRHIGDAVD-------------------------------------GMPWLGTFHS 106

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               ++++      + S++ I D +   +L+++     +    LD      +    +++ 
Sbjct: 107 IGARMLRRHAELVGLQSNYTIIDTDDQLRLLKQ----LIQENDLDEKRWPARQLAGLIDR 162

Query: 199 SNDEDI 204
             +  +
Sbjct: 163 WKNRGL 168


>gi|299140726|ref|ZP_07033864.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735]
 gi|298577692|gb|EFI49560.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735]
          Length = 761

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 39/160 (24%)

Query: 19  QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76
           +    Q  A +       V A AGSGKT +L  ++  L+      P ++L LT T  AA 
Sbjct: 4   ELNEGQRAAVEYCDGPQLVIAGAGSGKTRVLTYKIAYLIDEKQFEPWSILALTFTNKAAN 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ +++                             + R+L +            T 
Sbjct: 64  EMRSRIGKVVGQ--------------------------DRTRYLYM-----------GTF 86

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+    I++    +   T  F I DE  S+ L++   K  
Sbjct: 87  HSIFSRILRIEAEKLGYTKQFTIYDEADSRSLLKNIIKEM 126


>gi|170731518|ref|YP_001763465.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
 gi|169814760|gb|ACA89343.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
          Length = 695

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|75676545|ref|YP_318966.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255]
 gi|74421415|gb|ABA05614.1| ATP-dependent DNA helicase, Rep family [Nitrobacter winogradskyi
           Nb-255]
          Length = 816

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 43/191 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +S    EQ  A +       V A AG+GKT +L  R+  +L    A    +L +T T  
Sbjct: 34  YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARSGEILSVTFTNK 93

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM HR+ +++                                          G   +
Sbjct: 94  AAREMKHRLGQMLGQAVE-------------------------------------GMPWL 116

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++       + S+F I D +   +L+++     L +  +D+     +   
Sbjct: 117 GTFHSIAGRILRVHAELVQLKSNFTILDVDDQIRLLKQ----LLQADNIDDKRWPARMLA 172

Query: 194 EILEISNDEDI 204
            +++   +  +
Sbjct: 173 GLIDGWKNRGL 183


>gi|159186244|ref|NP_356043.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159141378|gb|AAK88828.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 688

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q  A +               + A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 5   YLDKLNEQQRKAVEHGVGLADGETAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRIL 64

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T ++ AA+EMS RV  I       +  I++  +                         
Sbjct: 65  LMTFSRRAASEMSRRVERICKQVIGANSAIMTDAL------------------------- 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     +++ +  +  +   F I D E S  L+   +   
Sbjct: 100 ----AWSGTFHGIGARLLRIYAEQIGLNIDFTIHDREDSADLMNLVRHEL 145


>gi|302340417|ref|YP_003805623.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637602|gb|ADK83029.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 1137

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 40/198 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q  A+    SA VSA AGSGKT IL +R + L+    A    +L LT T+ AAAEM
Sbjct: 5   LDPQQQEAAFTHHSAVVSAGAGSGKTTILSRRFVYLVETGRASVDEILTLTFTRKAAAEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                               R+ +    +      + T+ +
Sbjct: 65  YERIYREL-------------------------------RNAVPDAAKAYDQATISTLDS 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  I++       I S F + D+++++ +   A   TL             A  + +++
Sbjct: 94  FCARIVRDRSDRFGIPSDF-VQDDQKAEDIARAAALETLLR------HRGSDALEQYIDL 146

Query: 199 SNDED-IETLISDIISNR 215
              E  +E L   + +  
Sbjct: 147 FGFEGVLEGLFVALATRY 164


>gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
          Length = 867

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 80/197 (40%), Gaps = 40/197 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +   K +QLL ++   +  + A+AG+GKT  L +R+ R++ +    P  +LC+T T  A 
Sbjct: 5   MKLNKEQQLLINEDENNILLLASAGTGKTDTLSKRIARIIESGKGKPEEILCITFTNKAC 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ ++I   S                                        + ++T
Sbjct: 65  REMKERIEKVIGDSSR--------------------------------------NITIRT 86

Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+FC  I++ +   + +I + F I DEE  K++I+       +   +    +  K    
Sbjct: 87  FHSFCFDILKVEAKKKTDIFTDFIIFDEEDCKEMIKVCAPPGFSIAPMQRFIDSVKNIRV 146

Query: 195 ILEISNDEDIETLISDI 211
             +I +D  +E   + I
Sbjct: 147 KYDIYSDNSLEDYKNAI 163


>gi|148985058|ref|ZP_01818301.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP3-BS71]
 gi|147922756|gb|EDK73873.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP3-BS71]
          Length = 131

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 42/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R   +  A                                        
Sbjct: 59  TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T H+ C  I+++         +F I D  + + L++   K  
Sbjct: 84  ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMKRILKQL 127


>gi|325105548|ref|YP_004275202.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
 gi|324974396|gb|ADY53380.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
          Length = 1072

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 11/209 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AGSGKT  L    L LL +N      +L +T T  A  EM  R+LE++ + +  + 
Sbjct: 8   LQASAGSGKTFSLAVHYLTLLFSNESKYREILAVTFTNKATEEMKSRILEVLKSLAENNG 67

Query: 95  EILSAEITKIQGKK----PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           +       K+  +       +    KA  +   IL       V TI  F + +++ F  E
Sbjct: 68  DTGIESYRKLILEAYPAFTREKLSEKADKIYRRILHDYSRFSVNTIDGFVQKVIRGFAFE 127

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETLIS 209
             + + +++  E    K+ E   +     +  D   EL +    +  E   D       S
Sbjct: 128 LGLDASYSL--EMNIDKVKENLVERLDKEL--DRQPELVQWVIRLAKERIEDNKSWNYKS 183

Query: 210 DIISNR-TALKLIFFFFSYLWRRKIIEKS 237
           +++S      K  F  F    ++  +E +
Sbjct: 184 ELLSLTGEIFKERFAVFEQALQQIGLENA 212


>gi|53720964|ref|YP_109950.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243]
 gi|126441529|ref|YP_001060912.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668]
 gi|126451499|ref|YP_001068210.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a]
 gi|134281638|ref|ZP_01768346.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305]
 gi|217424087|ref|ZP_03455587.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576]
 gi|226193195|ref|ZP_03788805.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan
           9]
 gi|242314228|ref|ZP_04813244.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b]
 gi|254183976|ref|ZP_04890567.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655]
 gi|254186442|ref|ZP_04892959.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261078|ref|ZP_04952132.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a]
 gi|52211378|emb|CAH37368.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243]
 gi|126221022|gb|ABN84528.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668]
 gi|126225141|gb|ABN88681.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a]
 gi|134247305|gb|EBA47391.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305]
 gi|157934127|gb|EDO89797.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur
           52237]
 gi|184214508|gb|EDU11551.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655]
 gi|217393150|gb|EEC33172.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576]
 gi|225934795|gb|EEH30772.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan
           9]
 gi|242137467|gb|EES23869.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b]
 gi|254219767|gb|EET09151.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a]
          Length = 695

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|311748551|ref|ZP_07722336.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1]
 gi|126577070|gb|EAZ81318.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1]
          Length = 752

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 41/165 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
            + ++ ++  + E +  +D      + A AGSGKT +L  R+  L+         +L LT
Sbjct: 1   MDYLESLNPPQREAVEHTD--GPVMIIAGAGSGKTRVLTYRIAHLIYAKGVDAFNILSLT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA+EM HR+  +    +  +                                    
Sbjct: 59  FTNKAASEMKHRIESLAGLEARNT------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
              + T H+    I++    +    S+F I D + SK LI    K
Sbjct: 83  --WMGTFHSVFAKILRVESEKIGYPSNFTIYDADDSKSLIRSIVK 125


>gi|187736051|ref|YP_001878163.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426103|gb|ACD05382.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 1054

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 22/186 (11%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKAAAAEMSHRVL---- 83
           P  +  +SA+AG+GKT+ L  R L LL   +  HP  L+ +T T+ AA E   R+L    
Sbjct: 3   PLTNMLISASAGTGKTYQLSLRFLGLLALNSGNHPERLIAITFTRKAAGEFKDRILTDLA 62

Query: 84  -------------EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
                        E + A    +D          +  K       +  HLL  +++    
Sbjct: 63  AGATDEAGAARLKERLWAVIKGTDGEPGLWPGAPEAWKEENLHRERFLHLLHILVQNLAR 122

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS--IMLDNNEEL 188
           L + TI +    I      E  ++  F++ D    K    EA  S      +  +  ++ 
Sbjct: 123 LNLCTIDSLFAQIASASTFELGVS-GFSMIDPTAEKLARREALLSLYRECSVNKERRKDF 181

Query: 189 KKAFYE 194
           + AF  
Sbjct: 182 EDAFLS 187


>gi|107024447|ref|YP_622774.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054]
 gi|116688174|ref|YP_833797.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424]
 gi|105894636|gb|ABF77801.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054]
 gi|116646263|gb|ABK06904.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424]
          Length = 695

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|313665602|ref|YP_004047473.1| ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50]
 gi|312949842|gb|ADR24438.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50]
          Length = 722

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 47/225 (20%)

Query: 22  SEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
           ++QL A  +  +   + A AGSGKT ++  ++  L+   N  PS +L +T T  AA EM 
Sbjct: 12  TQQLAAVLNTDKPVRIIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKEMK 71

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RVL+I                                         +     + T H++
Sbjct: 72  ERVLQITN--------------------------------------NSFKSPFISTFHSW 93

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  +++       +   F I D +  K++I+ A    L    ++ NE  KK F + +   
Sbjct: 94  CSKVLRIDGKHIGLEDKFLIIDSDDQKRIIKSA----LKESNIELNENDKKTFDKKILYK 149

Query: 200 NDEDIETLIS---DIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
             E  E L+     I++  + L+  F     L++  +++ +    
Sbjct: 150 IKEWKEELVDPSEAILNATSTLEKNFAAIYRLYQNTLLKNNSLDF 194


>gi|254293049|ref|YP_003059072.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
 gi|254041580|gb|ACT58375.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
          Length = 1134

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 39/183 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           + + AS    +  + A  G+GKT  LV RV  LL     P  +L LT +  AA EM+ R+
Sbjct: 201 QAVAASHRGNAYLLEAGPGTGKTQTLVARVDALLEEGVDPRRILLLTFSNKAAGEMADRI 260

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
               ++ +                                        + + T HAF   
Sbjct: 261 ARKHSSAAT--------------------------------------AMWIGTFHAFGLD 282

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           I+++F  E  + +   + D  ++ +L+EE     L      N  +  +   +IL+  +  
Sbjct: 283 IVRRFHGELGLPTDPRMMDRIEAVELLEEEFPR-LDLAHYRNLYDPTQIISDILQAISRA 341

Query: 203 DIE 205
             E
Sbjct: 342 KDE 344


>gi|332184910|ref|ZP_08386659.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
 gi|332014634|gb|EGI56690.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
          Length = 765

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 42/190 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L +   +++           V A AG+GKT  L  R+  LL    A PS +L +T T  A
Sbjct: 18  LRTLNPAQREAVLTTDGPVLVLAGAGTGKTAALTARLAHLLYTRKAWPSEILSVTFTNKA 77

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++                                          G   + 
Sbjct: 78  AREMRERVGRLVGDAVE-------------------------------------GMPWLG 100

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA    ++++      + S+F I D +   +L+++     + +  +D      +A   
Sbjct: 101 TFHAIGAKMLRRHAELVGLQSNFTILDTDDQLRLLKQ----LIVAADIDEKRFPARALGG 156

Query: 195 ILEISNDEDI 204
           +++   ++ +
Sbjct: 157 LIDEWKNKGL 166


>gi|256384179|gb|ACU78749.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385011|gb|ACU79580.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296456014|gb|ADH22249.1| UvrD/REP helicase domain protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 722

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 45/229 (19%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
             +DL++    +     +  +   + A AGSGKT ++  ++  L+   +  P+ +L +T 
Sbjct: 5   HLLDLLN--PQQLAAVINTDKPVRIIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RVL+                ITK Q K P                     
Sbjct: 63  TNKAAKEMKERVLQ----------------ITKNQKKSP--------------------- 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T HA+C  +++       +   F I D +  K++I+ A K +   +  ++ +   K
Sbjct: 86  -FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKESNIELSENDKKTFDK 144

Query: 191 AFYEILEISNDE--DIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
                ++   +E  D +  I +  S  +R +  +   +   L +   I+
Sbjct: 145 KILYKIKEWKEELVDPDEAILNANSTYDRNSAIIYKLYQETLLKNNSID 193


>gi|124010006|ref|ZP_01694669.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
 gi|123983964|gb|EAY24352.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
          Length = 743

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           + I  ++  + E +L  D      + A AGSGKT +L  R+  L+        +L LT T
Sbjct: 3   DYIKGLNDPQREAVLHKD--GPIMIIAGAGSGKTRVLTNRIAHLIGTGVPAYNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ +II   +                                        +
Sbjct: 61  NKAAGEMRLRIEKIIGDKAK--------------------------------------DI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            + T H+    I++    +   TS F+I D + SK LI    K 
Sbjct: 83  WMGTFHSVFAKILRFEADKIGYTSSFSIYDTDDSKSLIRSIVKE 126


>gi|331703738|ref|YP_004400425.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802293|emb|CBW54447.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 722

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 45/229 (19%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
             +DL++    +     +  +   + A AGSGKT ++  ++  L+   +  P+ +L +T 
Sbjct: 5   HLLDLLN--PQQLAAVINTDKPVRIIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RVL+                ITK Q K P                     
Sbjct: 63  TNKAAKEMKERVLQ----------------ITKNQKKSP--------------------- 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T HA+C  +++       +   F I D +  K++I+ A K +   +  ++ +   K
Sbjct: 86  -FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKESNIELSENDKKTFDK 144

Query: 191 AFYEILEISNDE--DIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235
                ++   +E  D +  I +  S  +R +  +   +   L +   I+
Sbjct: 145 KILYKIKEWKEELVDPDEAILNANSTYDRNSAIIYKLYQETLLKNNSID 193


>gi|189351901|ref|YP_001947529.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
 gi|189335923|dbj|BAG44993.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 695

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|218780688|ref|YP_002432006.1| exodeoxyribonuclease V, beta subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762072|gb|ACL04538.1| exodeoxyribonuclease V, beta subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1167

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 5/153 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ L    +RLL+        +L +T T AA  E+  R+   +       
Sbjct: 17  LIEASAGTGKTYTLTSLYIRLLIEKGLLVDQILVVTFTVAATQELKDRIRNRLKIARDAF 76

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D     +       K + +  S+ R  +   +       V TIH FC+ ++ +   E+  
Sbjct: 77  DGKEVDDDLVQAVVKEHNNPQSRLR--VEDAIRRFDEAAVFTIHGFCQRVLGENAFESGA 134

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           +    +A    ++  + E  +        +  E
Sbjct: 135 SFDAELA--TDNQDFLMEIARDFWRREFYEAPE 165


>gi|324007528|gb|EGB76747.1| DNA helicase II [Escherichia coli MS 57-2]
          Length = 696

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 11  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 56

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 57  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 92

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 93  EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 131


>gi|300900636|ref|ZP_07118795.1| DNA helicase II [Escherichia coli MS 198-1]
 gi|300355867|gb|EFJ71737.1| DNA helicase II [Escherichia coli MS 198-1]
          Length = 695

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 10  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 55

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 56  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 91

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 92  EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 130


>gi|167587899|ref|ZP_02380287.1| UvrD/REP helicase [Burkholderia ubonensis Bu]
          Length = 696

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +I+E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133


>gi|315293210|gb|EFU52562.1| DNA helicase II [Escherichia coli MS 153-1]
          Length = 699

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 14  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 59

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 60  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 95

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 96  EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 134


>gi|300939966|ref|ZP_07154595.1| DNA helicase II [Escherichia coli MS 21-1]
 gi|300455228|gb|EFK18721.1| DNA helicase II [Escherichia coli MS 21-1]
 gi|315284765|gb|EFU44210.1| DNA helicase II [Escherichia coli MS 110-3]
          Length = 695

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 10  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 55

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 56  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 91

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 92  EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 130


>gi|300985670|ref|ZP_07177557.1| DNA helicase II [Escherichia coli MS 45-1]
 gi|300408054|gb|EFJ91592.1| DNA helicase II [Escherichia coli MS 45-1]
          Length = 699

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 14  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 59

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 60  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 95

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 96  EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 134


>gi|300979415|ref|ZP_07174544.1| DNA helicase II [Escherichia coli MS 200-1]
 gi|300308006|gb|EFJ62526.1| DNA helicase II [Escherichia coli MS 200-1]
          Length = 698

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 13  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 58

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 59  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 94

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 95  EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 133


>gi|313157484|gb|EFR56903.1| UvrD/REP helicase [Alistipes sp. HGB5]
          Length = 1047

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 76/173 (43%), Gaps = 6/173 (3%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90
           R+  ++A+AGSGKT+ L  + +R ++        +L +T T  A  EM  R+L+ I   +
Sbjct: 2   RAKILNASAGSGKTYQLAYKYVRDVVEQPSIYRHILAVTFTNKATEEMKSRILKEIHLLA 61

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +      + +        +   +A  +   IL       V TI  F + I++ F  E
Sbjct: 62  SGGESSYLENLCRELDMD-AATVRRRAAEVRSKILHDYSRFTVLTIDTFFQRILRAFIKE 120

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
             I  ++ +  E ++  ++ ++  + +  I  D +  L++   + ++   DE 
Sbjct: 121 LGIDLNYNV--EIETASVLTKSADTLIEQITTDRD--LQRWLTDFVQERIDEG 169


>gi|260424687|ref|ZP_05732964.2| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470]
 gi|260402848|gb|EEW96395.1| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470]
          Length = 746

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 51/178 (28%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D +++   ++           + A AGSGKT  L  R+  +L     P  +L +T T 
Sbjct: 13  YLDTLNE--RQRQAVEQIEGPVLIMAGAGSGKTKALTCRIAYMLEQGIRPQNILAITFTN 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++ A +                                        L 
Sbjct: 71  KAAQEMRERVHHLVGAEA--------------------------------------DKLW 92

Query: 133 VQTIHAFCEAIMQQ----FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           + T H+F    +++     P   +    F I D + SK++I    K+ L  + LD+ +
Sbjct: 93  MYTFHSFGARFLRREINNHPPFTD---KFTIYDSDDSKQMI----KNILKELNLDDKQ 143


>gi|304440181|ref|ZP_07400071.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371230|gb|EFM24846.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 1076

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 90/215 (41%), Gaps = 30/215 (13%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           I+ I     + L+  D  ++  V A AG+GKT +LV R++ L++  N  P  ++ +T T 
Sbjct: 7   INEIENNNRDNLITGD--KNFLVEAGAGAGKTFLLVNRLIDLIINKNIKPKEIVAITFTV 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA ++  R+ +     +   ++                         +  ILE    ++
Sbjct: 65  KAATDLKKRIYDEFAKRAKTDNK-------------------------IKNILEFIPEIQ 99

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+FC +I+ + P +A ++ ++ + ++ +  + + +  +    +     ++     F
Sbjct: 100 IGTIHSFCNSIISRRPFDAGLSMNYRLLEDSEYDRYLSKMYEEFEENSYKYVDKYTADIF 159

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
             +   S    IE      ++      +I  F ++
Sbjct: 160 LHLNHRS--RIIENFSKFAMNESVDFPVIEGFENF 192


>gi|254796732|ref|YP_003081568.1| DNA helicase II, UvrD/Rep family, C-terminal fragment
           [Neorickettsia risticii str. Illinois]
 gi|254590533|gb|ACT69895.1| DNA helicase II, UvrD/Rep family, C-terminal fragment
           [Neorickettsia risticii str. Illinois]
          Length = 161

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 40/160 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++    ++L          + A AG+GKT  LV R+  L+ +  AHP+ ++ +T    AA
Sbjct: 35  MNLNDEQRLAVETVNGPVLILAGAGTGKTKTLVHRIAHLIKSGYAHPNQIMAVTFANKAA 94

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV EI+                                              + T
Sbjct: 95  NEMIQRVNEIVGEMKFH---------------------------------------WIGT 115

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            HA    I++    +      F I D +   +++++  + 
Sbjct: 116 FHAAAAKILRIEADKLGFKPDFTILDVDDQVRMLQKVAQE 155


>gi|301328420|ref|ZP_07221506.1| DNA helicase II [Escherichia coli MS 78-1]
 gi|300845170|gb|EFK72930.1| DNA helicase II [Escherichia coli MS 78-1]
          Length = 700

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +LV R+  L+ + N  P +++ +T T  AAAEM HR+ +++                
Sbjct: 15  KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 60

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                   + GG+ V T H     +++   ++AN+   F I D 
Sbjct: 61  ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 96

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           E   +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 97  EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 135


>gi|152984144|ref|YP_001350187.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PA7]
 gi|150959302|gb|ABR81327.1| exodeoxyribonuclease V, beta subunit [Pseudomonas aeruginosa PA7]
          Length = 1244

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 17/198 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    +RL+L +           P  +L +T T AA  E+  R+
Sbjct: 18  GSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEILVVTFTDAATRELRERI 77

Query: 83  LEIITAWSHLSDEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
              +T  +    E  ++    +  ++ + P +     AR LL    E      V TIH++
Sbjct: 78  RSRLTEAARCFAEPQASHDGLLVALRQQYPAERWPGCAR-LLRLAAEWMDEAAVSTIHSW 136

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++++   ++   S F    E    +L+ E  +            +  +A       S
Sbjct: 137 CYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYGLTAQAAQAVASC--YS 192

Query: 200 NDEDIETLISDIISNRTA 217
             E +   +  +++ + A
Sbjct: 193 GPEALGKALQPLLARQDA 210


>gi|325288901|ref|YP_004265082.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964302|gb|ADY55081.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM
           8271]
          Length = 745

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
             +++ ++  + E     D      + A AGSGKT  L  R+  L+    +   +L +T 
Sbjct: 1   MYSLEDLNPVQREAAEYLD--GPLLILAGAGSGKTKALTYRIAHLIAKGVNSWNILAITF 58

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RVL ++ +                                         G
Sbjct: 59  TNKAAREMRERVLALVGSEGE--------------------------------------G 80

Query: 131 LKVQTIHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L + T H+ C  I+++        +  F I D      L+    K  
Sbjct: 81  LWISTFHSACVKILRREIAHLEGYSRSFVIYDASDQLSLLRSCYKEL 127


>gi|262038007|ref|ZP_06011419.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264]
 gi|261747960|gb|EEY35387.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264]
          Length = 733

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           + ++ +  SEQ  A++       + A AGSGKT  +  R+  ++      P  +L LT T
Sbjct: 1   MSILDELNSEQKKAAEKTEGPILILAGAGSGKTRTVTYRIAHMIKEIGISPMNILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R   +I A S                                        L
Sbjct: 61  NKAAREMKERAEALIGADS--------------------------------------YNL 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H+F   +++ +        +F I D +  K +I + KK  
Sbjct: 83  VVSTFHSFSVKLLKTYADRIGFGRNFNIYDVDDQKSIITKIKKDL 127


>gi|298505648|gb|ADI84371.1| exodeoxyribonuclease V, beta subunit [Geobacter sulfurreducens
           KN400]
          Length = 1204

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII-TAWSH 91
            V A+AG+GKT  +    LRL++      P  +L +T T+AA  E+  R+ + +  A   
Sbjct: 19  LVEASAGTGKTFAIACLYLRLVVEGEGLLPDNILVVTFTEAATKELRARIRQRLRQARDR 78

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            +      E              + A   + + L+T     + TIH FC   +Q+   E+
Sbjct: 79  FAGGGAPDEFLDRLALGERWPGHATALARIDSALQTFDCAAISTIHGFCLRALQENAFES 138

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
              S F        + L+ +             +  L      +    + E++   + +I
Sbjct: 139 G--SLFDTELAADQEPLLRQVADDFWRHHFFGADAPLLPL--ALGRRWSPEELAAFLRNI 194

Query: 212 ISN 214
              
Sbjct: 195 AGK 197


>gi|282890111|ref|ZP_06298642.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499962|gb|EFB42250.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 721

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 52/191 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + +    +            V A AGSGKT ++ QR+  L+     PS +L +T T  AA
Sbjct: 1   MKNLNDQQVRAIQALEGPFLVLAGAGSGKTRVVTQRIAHLIDEGIPPSQILAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM +RV E+                                         T   + + T
Sbjct: 61  SEMQNRVKEL-----------------------------------------TFHSVLIST 79

Query: 136 IHAFCEAIMQQ----FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            H+    I+++    FP  +    +F I DEE   K+I    K+ +  + + + +   KA
Sbjct: 80  FHSLGARILRESIHAFPHYSR---NFVIYDEEDVLKVI----KNCMEELHISDKKLEPKA 132

Query: 192 FYEILEISNDE 202
           F  ++  + + 
Sbjct: 133 FKHLISQAKNA 143


>gi|296158274|ref|ZP_06841106.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295891610|gb|EFG71396.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 708

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 38/173 (21%)

Query: 12  ETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +T   +++    Q  A +        P  +  V A AGSGKT+ L  RV  L++  A P 
Sbjct: 11  DTAAWLARLNDAQREAVEYGADTPTAPPGALLVIAGAGSGKTNTLAHRVANLVVNGADPR 70

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT ++ AA EM  RV  I  A                               L   
Sbjct: 71  RILLLTFSRRAALEMIRRVTRIAGA------------------------------ALGTR 100

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                G     T H+    +++++     +   F I D E S  L+   +   
Sbjct: 101 AALAQGLTWSGTFHSVGARLLREYADLIGLAPAFTINDREDSADLMNLVRHEL 153


>gi|28897857|ref|NP_797462.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838039|ref|ZP_01990706.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810]
 gi|260877018|ref|ZP_05889373.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034]
 gi|260899090|ref|ZP_05907531.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466]
 gi|28806070|dbj|BAC59346.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748573|gb|EDM59432.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810]
 gi|308089138|gb|EFO38833.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466]
 gi|308093677|gb|EFO43372.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034]
          Length = 1139

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 44/201 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++  A    +   + A  G+GKT  LV+RV  LL     P  +L LT +  AA EM+
Sbjct: 198 NEQQKHAADHRGKPYLLEAGPGTGKTQTLVKRVEGLLDEGVDPRRILILTFSNKAAGEMA 257

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+                                           E    + + T HAF
Sbjct: 258 ERLASKNK--------------------------------------EAVASMWIGTFHAF 279

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              ++++F  E        + +  ++     EA +     + L++   L      I  + 
Sbjct: 280 GLDLVRRFYSELGFEKEPRLLERTEAV----EALEDEFPRLGLEHFRNLYDPTEHITNLL 335

Query: 200 NDEDIETLISDIISNRTALKL 220
           +   I     +++ +R   +L
Sbjct: 336 S--AISRAKDEVVDHRDYFRL 354


>gi|170726988|ref|YP_001761014.1| exodeoxyribonuclease V subunit beta [Shewanella woodyi ATCC 51908]
 gi|169812335|gb|ACA86919.1| exodeoxyribonuclease V, beta subunit [Shewanella woodyi ATCC 51908]
          Length = 1229

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT  +    +RLLL +  P       +L +T T AA  E+  R+   
Sbjct: 23  GGSRLIEASAGTGKTFTIAGLYVRLLLGHEIPTPLTCEQILVVTFTNAATGELRDRIRRK 82

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+          E+ +   +   +S+   A   L   L++     + TIH FC+ I+
Sbjct: 83  IQLAYRCFIGLDTGDELIESLYRLTPESERPLALKRLDLALKSLDEASIFTIHGFCQRIL 142

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179
                E+++   S F + D E     +  A +     
Sbjct: 143 ADMAFESSLLFESEFTLDDSE----FLHHAVRDFWRE 175


>gi|84516406|ref|ZP_01003765.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53]
 gi|84509442|gb|EAQ05900.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53]
          Length = 797

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
               +D ++  + + +   D      + A AG+GKT  L  R+  +L   +A P  +L +
Sbjct: 26  AMPYLDGLNPAQRQAVETLD--GPVLMLAGAGTGKTKALTSRIAHVLATRSARPQEVLAV 83

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM HR+  ++                                          
Sbjct: 84  TFTNKAAREMKHRIAALMGEAVEGLP---------------------------------- 109

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
               + T H+    ++++      + S F I D +   +L+++  
Sbjct: 110 ---WLGTFHSVSAKLLRRHAELVGLQSSFTILDTDDQLRLLKQLV 151


>gi|190346242|gb|EDK38280.2| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 830

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 38/177 (21%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           E +  +++ +   + A   +R   V A  G+GKT +LV RV  LLL     P  ++  T 
Sbjct: 7   ELLSSLNENQRTAVTAPLNSR-ICVIAGPGTGKTKVLVSRVAHLLLHDQIPPQQIIVTTF 65

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TK AA EM  R+  ++                                            
Sbjct: 66  TKKAANEMVSRLRLVLQDTDI-----------------------------------DVNR 90

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           L V T H+ C  I++++     +   F IADE+ S  L+EE  +    +   +++E+
Sbjct: 91  LMVGTFHSICYRIIKKYGHLIGLE-GFTIADEKDSIHLLEECLEKIGKNPQQNDDEK 146


>gi|76798891|ref|ZP_00781098.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21]
 gi|76585760|gb|EAO62311.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21]
          Length = 644

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            +  I  ++  ++E +  +D      + A AGSGKT +L  R+  L+     +P  +L +
Sbjct: 1   MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R                           P   D               
Sbjct: 59  TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T H+ C  I+++         +F I D  + + L++   K  
Sbjct: 84  ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127


>gi|241761119|ref|ZP_04759208.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374738|gb|EER64199.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 768

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59
           +Y +   E     D +++   EQ  +      +  V A AG+GKT  L  R+  L+    
Sbjct: 5   LYSSFSAETPPEPDYLARLNPEQKEVVRTTEGALLVLAGAGTGKTAALTARLAYLVETLK 64

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A PS +L +T T  AA EM  RV +++ + +                             
Sbjct: 65  AWPSQILAVTFTNKAAREMQMRVGDLLGSQAENMP------------------------- 99

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                        + T H+    ++++      + S F I D +   +L+++     +  
Sbjct: 100 ------------WLGTFHSIAAKMLRRHAELVGLKSDFIILDTDDQIRLLKQ----LIQG 143

Query: 180 IMLDNNEELKKAFYEILEISNDEDI 204
             +D  +   K    I++   +  +
Sbjct: 144 QGIDEKQWPAKQLAGIIDRWKNRGL 168


>gi|56551470|ref|YP_162309.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543044|gb|AAV89198.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 768

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59
           +Y +   E     D +++   EQ  +      +  V A AG+GKT  L  R+  L+    
Sbjct: 5   LYSSFSAETPPEPDYLARLNPEQKEVVRTTEGALLVLAGAGTGKTAALTARLAYLVETLK 64

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A PS +L +T T  AA EM  RV +++ + +                             
Sbjct: 65  AWPSQILAVTFTNKAAREMQMRVGDLLGSQAENMP------------------------- 99

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                        + T H+    ++++      + S F I D +   +L+++     +  
Sbjct: 100 ------------WLGTFHSIAAKMLRRHAELVGLKSDFIILDTDDQIRLLKQ----LIQG 143

Query: 180 IMLDNNEELKKAFYEILEISNDEDI 204
             +D  +   K    I++   +  +
Sbjct: 144 QGIDEKQWPAKQLAGIIDRWKNRGL 168


>gi|94497982|ref|ZP_01304546.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94422565|gb|EAT07602.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 758

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
              ++           V A AG+GKT  L  R+  L+    A PS +L +T T  AA EM
Sbjct: 18  NTPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATRRAWPSEILAVTFTNKAAREM 77

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  +I                                          G   + T HA
Sbjct: 78  RARVGAMIGDAVE-------------------------------------GMPWLGTFHA 100

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               ++++      + S+F I D +   +L+++     + +  +D      +    +++ 
Sbjct: 101 IAARMLRRHAELVGLQSNFTILDTDDQLRLMKQ----LIQAEGIDEKRWPARQLGGLIDQ 156

Query: 199 SNDEDI 204
             ++ +
Sbjct: 157 WKNKGL 162


>gi|23428614|gb|AAM12391.1| helicase II [Zymomonas mobilis subsp. mobilis CP4]
          Length = 777

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59
           +Y +   E     D +++   EQ  +      +  V A AG+GKT  L  R+  L+    
Sbjct: 4   LYSSFSAETPPEPDYLARLNPEQKEVVRTTEGALLVLAGAGTGKTAALTARLAYLVETLK 63

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A PS +L +T T  AA EM  RV  ++ +++                             
Sbjct: 64  AWPSQILAVTFTNKAAREMQMRVGYLLGSFAENMP------------------------- 98

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                        + T H+    ++++      + S F I D +   +L+++     +  
Sbjct: 99  ------------WLGTFHSIAAKMLRRHAELVGLKSDFIILDTDDQIRLLKQ----LIQG 142

Query: 180 IMLDNNEELKKAFYEILEISNDEDI 204
             +D  +   K    I++   +  +
Sbjct: 143 QGIDEKQWPAKQLAGIIDRWKNRGL 167


>gi|39996634|ref|NP_952585.1| exodeoxyribonuclease V subunit beta [Geobacter sulfurreducens PCA]
 gi|39983515|gb|AAR34908.1| exodeoxyribonuclease V, beta subunit [Geobacter sulfurreducens PCA]
          Length = 1204

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII-TAWSH 91
            V A+AG+GKT  +    LRL++      P  +L +T T+AA  E+  R+ + +  A   
Sbjct: 19  LVEASAGTGKTFAIACLYLRLVVEGEGLLPDNILVVTFTEAATKELRARIRQRLRQARDR 78

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            +      E              + A   + + L+T     + TIH FC   +Q+   E+
Sbjct: 79  FAGGGAPDEFLDRLALGERWPGHATALARIDSALQTFDCAAISTIHGFCLRALQENAFES 138

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
              S F        + L+ +             +  L      +    + E++   + +I
Sbjct: 139 G--SLFDTELAADQEPLLRQVADDFWRHHFFGADAPLLPL--ALGRRWSPEELAAFLRNI 194

Query: 212 ISN 214
              
Sbjct: 195 AGK 197


>gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23]
 gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23]
          Length = 723

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71
            +D ++Q + E + A+       + A AGSGKT +L  R++ L  +      +++ +T T
Sbjct: 1   MLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA E+  R+                                       + +     G+
Sbjct: 59  NKAAGEIQQRID--------------------------------------LQLRHGKRGM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    +++    +A +  +F + D +   +L++   +S 
Sbjct: 81  WIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 125


>gi|149241203|ref|XP_001526284.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450407|gb|EDK44663.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 939

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 29/181 (16%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLL-A 58
           +   S     E    +    + Q +A     +    + A  G+GKT +L+ RV  LLL  
Sbjct: 1   MSEGSTDSTPEIEMFLRGLNANQRIAVTSPANGRLQIIAGPGTGKTKVLISRVAYLLLHE 60

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
              P  ++  T TK AA EM  R+ +++      +  +    I                 
Sbjct: 61  RIKPEHIIVTTFTKKAANEMVDRLGKMLGNTGDGTGVVPGTSIE---------------- 104

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
                       L + T H+ C  I+++F  +  +   F IADE     LI+E  +  L+
Sbjct: 105 ---------LDKLLIGTFHSICFRIIKKFGHKVGL-GGFTIADERDKDILIKEMFEKNLS 154

Query: 179 S 179
            
Sbjct: 155 D 155


>gi|309778890|ref|ZP_07673660.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp.
           5_7_47FAA]
 gi|308922237|gb|EFP67864.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp.
           5_7_47FAA]
          Length = 716

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 29/177 (16%)

Query: 9   EHSETIDLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLAN 59
               T   ++Q   +Q  A +          T    V A AGSGKTH L  RV  L+   
Sbjct: 12  NAPATPGYLAQLNDQQRQAVEFGISGADAAETGPLLVLAGAGSGKTHTLGWRVAHLVANG 71

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  +L LT ++ AA+E+S+R   ++                 +QG++ N + ++ A  
Sbjct: 72  ADPQRILLLTFSRRAASELSNRAGHLLAR--------------AMQGERSNNA-LNSAGT 116

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T L         T H     +++++     +   F I D   S  L+   +   
Sbjct: 117 SYKTTLP-----WAGTFHGIGARLLREYAERVGLAPDFTIHDRSDSADLLNVVRHEL 168


>gi|295133070|ref|YP_003583746.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia
           profunda SM-A87]
 gi|294981085|gb|ADF51550.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia
           profunda SM-A87]
          Length = 773

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            +++    Q   +        V A AGSGKT +L  R+  ++        +L LT T  A
Sbjct: 4   YLAELNDAQRAPTLQIDGPMIVIAGAGSGKTRVLTYRIAYMMSKGIDAFNILALTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM HR+ +I+      +                                     L + 
Sbjct: 64  AREMQHRISQIVGRSEAKN-------------------------------------LWMG 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++    +    S+F I D + S+ +I    K  
Sbjct: 87  TFHSVFAKILRFEADKLGYPSNFTIYDTQDSQSVIRAIIKDM 128


>gi|187926312|ref|YP_001892657.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|241665800|ref|YP_002984159.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|187728066|gb|ACD29230.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|240867827|gb|ACS65487.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 716

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 29/177 (16%)

Query: 9   EHSETIDLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLAN 59
               T   ++Q   +Q  A +          T    V A AGSGKTH L  RV  L+   
Sbjct: 12  NAPATPGYLAQLNDQQRQAVEFGISGADAAETGPLLVLAGAGSGKTHTLGWRVAHLVANG 71

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  +L LT ++ AA+E+S+R   ++                 +QG++ N + ++ A  
Sbjct: 72  ADPQRILLLTFSRRAASELSNRAGHLLAR--------------AMQGERSNNA-LNSAGT 116

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T L         T H     +++++     +   F I D   S  L+   +   
Sbjct: 117 SYKTTLP-----WAGTFHGIGARLLREYAERVGLAPDFTIHDRSDSADLLNVVRHEL 168


>gi|298372853|ref|ZP_06982843.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275757|gb|EFI17308.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 776

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 53/158 (33%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               QL A       + + A AGSGKT +L  ++  L+      S++L LT T  AA EM
Sbjct: 15  LNPAQLAAVTYCDGPSVIVAGAGSGKTRVLTYKIAYLIAQGFPASSILALTFTNKAANEM 74

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+++I+                                            L   T H+
Sbjct: 75  KERIMQIVGEKYTR-------------------------------------YLWAGTFHS 97

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               I++Q          F I D + SK L++   K  
Sbjct: 98  VFLRILRQEVDAIGFLPDFTIYDTQDSKSLVKSIVKDM 135


>gi|289208791|ref|YP_003460857.1| exodeoxyribonuclease V subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288944422|gb|ADC72121.1| exodeoxyribonuclease V, beta subunit [Thioalkalivibrio sp. K90mix]
          Length = 1240

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 74/191 (38%), Gaps = 19/191 (9%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT+ +    LRL+L +           P  +L +T T+AA  E+  R+
Sbjct: 17  GSRLIEASAGTGKTYTIAALYLRLVLGHGELPEGTGELTPPQILVMTFTEAATRELRERI 76

Query: 83  LEIITAWSHL----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++   + +          A    +    P  +  + A   L    E      V TIH 
Sbjct: 77  RAVLARGARILRGEPAPAHEALWPALLDAYPEPAARAGAARRLELAAEWMDEAAVSTIHG 136

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           +C  ++++   ++    +  +  E    +L+ EA +      +     +       +L  
Sbjct: 137 WCYRMLREHAFDSGSLFNQRL--EADQGELVAEAARDYWRRFVYPQPADH----LRLLRQ 190

Query: 199 SNDEDIETLIS 209
           +  E  + L++
Sbjct: 191 AFGEGPDDLLA 201


>gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
 gi|41816608|gb|AAS11394.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
          Length = 662

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 38/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +    +       + A AGSGKT ++  R+  +L      S +L LT T  AA EM+
Sbjct: 9   NPEQFKAVTTINGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFTNKAAKEMA 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV E+                                             L V T HAF
Sbjct: 69  DRVKELTGK--------------------------------------KLQNLTVSTFHAF 90

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              +++    +    S+F+I DE    +LI+E  +  
Sbjct: 91  GVKVLRSHIDKIGWRSNFSIYDETDRNQLIKECGREL 127


>gi|58584885|ref|YP_198458.1| superfamily I DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419201|gb|AAW71216.1| Superfamily I DNA and RNA helicase, UvrD [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 638

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 43/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            ++ + L++    +Q   +       + A AG+GKT  +  R+  ++    AH   +L +
Sbjct: 1   MNDYLSLLN--PEQQSAVTKVDGPVLILAGAGTGKTRTITSRIAHIIRNGYAHSDEILAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RVL++                                           
Sbjct: 59  TFTNKAANEMVSRVLKLTGT---------------------------------------- 78

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             L + T HA    I+++      +  +F I   +   ++I+      
Sbjct: 79  NILWLGTFHAIAAKILRRHADIVGLNPNFTIIGVDDQLQVIKNIINEV 126


>gi|226226951|ref|YP_002761057.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
 gi|226090142|dbj|BAH38587.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
          Length = 820

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 58/181 (32%), Gaps = 43/181 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           +          A V A AGSGKT +L  R+ RL+   N  P  +L +T T  AA EM  R
Sbjct: 33  QTEAVFHDDGPALVLAGAGSGKTRVLTTRIARLIGTMNVAPHEILAVTFTNKAAGEMRAR 92

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + +                                         P G+   T HA   
Sbjct: 93  IAKFLG--------------------------------------HEPKGMWCGTFHALGA 114

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +++          +F I DE+ +      A K  +    L   E   KA    +  + +
Sbjct: 115 RMLRGVAPLVGREQNFTIYDEDDAIG----AVKRVMERRNLSPKEFAPKAILSAISSAKN 170

Query: 202 E 202
            
Sbjct: 171 A 171


>gi|224369743|ref|YP_002603907.1| RecB [Desulfobacterium autotrophicum HRM2]
 gi|223692460|gb|ACN15743.1| RecB [Desulfobacterium autotrophicum HRM2]
          Length = 1242

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 12/189 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    +RL+L +           P  +L +T T AA  E+  R+   
Sbjct: 17  LIEASAGTGKTYTIAALYIRLVLGHGKENGFSRPLVPPEILVVTFTNAATQELRERIRAR 76

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           +T            +      K   +  D+    +LL           + TIHA+C+ ++
Sbjct: 77  LTEACAFFRGRGGGDPFLQGLKDDYSPGDLPAMANLLERAALWMDESAIHTIHAWCQRML 136

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
            Q   ++   S F +  E     L+EEA      +     + E  +A  +   ++   D+
Sbjct: 137 FQHAFDS--LSLFDLTLEPGDDDLLEEAVWDFWRTNFYPRDVETLQALGQATGLTTPADL 194

Query: 205 ETLISDIIS 213
              +  +++
Sbjct: 195 LKKVRPLMA 203


>gi|260654704|ref|ZP_05860194.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
 gi|260630720|gb|EEX48914.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
          Length = 1181

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 16/159 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S    +   A+   R   VSA AG+GKT  L  R L  +   A   ++L LT T+ AA E
Sbjct: 22  SALPEQAEAATSSERLTVVSAGAGTGKTWTLAWRFLWCMAQGAPAPSILTLTFTEKAAEE 81

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+  +    +  + E     ++++         +++ R  L +         + TIH
Sbjct: 82  MRSRIAALTEGVARQAKEAGCVRLSEV---------LNEGRRCLDSAY-------ISTIH 125

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            FC  ++++  L   ++    +    + +    +   + 
Sbjct: 126 GFCLRVIKETGLSLPVSPSCRLVSAPEEEFFWRQVADAL 164


>gi|159901112|ref|YP_001547359.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894151|gb|ABX07231.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 758

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           LI     +Q           V A  GSGKT +L  R+  L+      P  +L +T T  A
Sbjct: 6   LIGLNAQQQRAVQAIHGPVLVLAGPGSGKTRVLTHRIAYLINEVGVRPYNILAVTFTNKA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  +I                            S+A  +++            
Sbjct: 66  AREMRERIGNLIGE--------------------------SRAHDVMM-----------G 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C   +++        + F + D +  ++++++  +  
Sbjct: 89  TFHSICARWLRRDIQHLQRANDFVVYDADDQQRVMKQILREL 130


>gi|328541555|ref|YP_004301665.1| UvrD/REP helicase [Polymorphum gilvum SL003B-26A1]
 gi|326415759|gb|ADZ72821.1| UvrD/REP helicase [Polymorphum gilvum SL003B-26A1]
          Length = 426

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 38/149 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +   A     +  + A  G+GKT  LV RV  LL     P  +L LT +  AA EM+ R+
Sbjct: 201 QATAAGHRGGAYLLEAGPGTGKTQTLVARVEGLLADGVDPRRILLLTFSNKAAGEMAERI 260

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
                                   K+P+ +                  + + T HAF   
Sbjct: 261 AR----------------------KRPDAA----------------AAMWIGTFHAFGLD 282

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171
           I+++F  E  +     + D  ++ +L+EE
Sbjct: 283 IIRRFYAELGLQKDPRMMDRTEAVELLEE 311


>gi|119945195|ref|YP_942875.1| exodeoxyribonuclease V, beta subunit [Psychromonas ingrahamii 37]
 gi|119863799|gb|ABM03276.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychromonas
           ingrahamii 37]
          Length = 1226

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 15/207 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    +RLLL +              +L +T T+AA AE+ +R+ E 
Sbjct: 31  LIEASAGTGKTYTIASLFIRLLLGHGEQAAHQGPLTVDQILVVTFTEAATAELRNRIRER 90

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I     L      ++    Q       D   A  LL           + TIH FC+ ++ 
Sbjct: 91  IQD-VRLDFIQGESDNPFTQSLLKEVVDHQVAIRLLRFAELQMDEAAIFTIHGFCQRMLM 149

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           Q   E+   S F     E   +L++ A      +     +  L +  +   E  N   ++
Sbjct: 150 QNAFESG--SLFEQNLLEDDAQLLQLACNDFWRTFFYGLSTPLTELIFSYWE--NPGQLQ 205

Query: 206 TLISDIISNRTALKLIFFFFSYLWRRK 232
             +   +S R+ L  +     + ++ K
Sbjct: 206 KNLRPFLS-RSDLHFLPKINDFDFKAK 231


>gi|42522842|ref|NP_968222.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574038|emb|CAE79215.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 672

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AGSGKT +LV R  RL+    A    +  LT T  AA E+
Sbjct: 8   NPEQQKAVKHNFGPLLILAGAGSGKTTVLVSRTGRLISERVAQAQEICVLTFTNKAAREL 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HRV   + +                                      +  G+   T H+
Sbjct: 68  KHRVGAKLGS--------------------------------------SGSGMWAGTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           F   I+++F   A ++ +F I D+     ++++  K  
Sbjct: 90  FGLQILRRFHKHAGLSPYFGIVDQSDCNAIVKDLIKDI 127


>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
 gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
          Length = 866

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 75/186 (40%), Gaps = 40/186 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L +  + ++++  D   S  + A AG+GKT  L +RV  L+++  A P  +LCLT T  A
Sbjct: 20  LHAPNEQQRVVIGDTAHSILLLAGAGTGKTDTLARRVANLIVSGAAAPEEILCLTFTNRA 79

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             EM  R+  +    +                                        + V 
Sbjct: 80  CREMIERIETVAGEAAR--------------------------------------DVAVH 101

Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           T+H+FC  ++++ P    ++   F + D   + +++  A + TL   +   + ++   F 
Sbjct: 102 TVHSFCARMLRETPAARTDLGRDFTVCDAADALEIVRLAVERTLGREIDGRSAQILLDFI 161

Query: 194 EILEIS 199
            +++ +
Sbjct: 162 GLVKDA 167


>gi|88608415|ref|YP_506245.1| UvrD/Rep family helicase [Neorickettsia sennetsu str. Miyayama]
 gi|88600584|gb|ABD46052.1| helicase, UvrD/Rep family [Neorickettsia sennetsu str. Miyayama]
          Length = 630

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 44/189 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++    ++L          + A AG+GKT  LV R+  L+ +  AHP+ ++ +T    AA
Sbjct: 14  MNLNDEQRLAVETVNGPVLILAGAGTGKTKTLVHRIAHLIRSGYAHPNQIMAVTFANKAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV EI+                                              + T
Sbjct: 74  NEMIQRVNEIVGEMKFH---------------------------------------WIGT 94

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            HA    I++    +      F I D +   +++++  +       ++ ++ L K +  +
Sbjct: 95  FHAAAAKILRIEAEKLGFKPDFTILDVDDQVRMLQKVAQ----EKKIEADKALLKKYLSV 150

Query: 196 LEISNDEDI 204
           +    D+  
Sbjct: 151 ISAWKDKAF 159


>gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12]
 gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12]
          Length = 723

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71
            +D ++Q + E + A+       + A AGSGKT +L  R++ L  +      +++ +T T
Sbjct: 1   MLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA E+  R+                                       + +     G+
Sbjct: 59  NKAAGEIQQRID--------------------------------------LQLRHGKRGM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    +++    +A +  +F + D +   +L++   +S 
Sbjct: 81  WIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 125


>gi|251789629|ref|YP_003004350.1| exodeoxyribonuclease V subunit beta [Dickeya zeae Ech1591]
 gi|247538250|gb|ACT06871.1| exodeoxyribonuclease V, beta subunit [Dickeya zeae Ech1591]
          Length = 1224

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 32/230 (13%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHR 81
           + S  + A+AG+GKT  +    +RL+L +          +P  +L +T T AA  E+  R
Sbjct: 18  SGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPEILVVTFTDAATRELRDR 77

Query: 82  VLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +   +   +       +D+     + +++   P +     AR L +   E      V TI
Sbjct: 78  IRARLAQAAAYFQPGGNDKQDDPLLHELRADYPPEQWPDCARKLQLAA-EWMDEAAVSTI 136

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN----------- 185
           H++C  ++ +   ++   S F    E     ++ E  +    +     +           
Sbjct: 137 HSWCNRMLGEHAFDSG--SLFNQTLETDQSDVLLEVVRDYWRTFFFPLDARDVLELRDNW 194

Query: 186 ---EELKKAFYEILEISNDEDIETLISDIIS-NRTALKLIFFFFSYLWRR 231
              E   ++   +LE +++  I+ L + I S  R             W +
Sbjct: 195 LSPESFYRSVTPLLEYADEIGIDELPAQIFSVARDEKTRRLAALKAPWPQ 244


>gi|170719947|ref|YP_001747635.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida W619]
 gi|169757950|gb|ACA71266.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida W619]
          Length = 1223

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 77/215 (35%), Gaps = 31/215 (14%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSQLIEASAGTGKTFTISALYLRLILGHGGEQAFGRELLPPQILVVTFTDAATKELRERI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140
              +   +      L      +   + +  +    +  + L   ++      V TIH +C
Sbjct: 75  RARLAEAARFFRGELQEADPLLHQLRDDYPQEHWPRCANRLEIAVQWMDEAAVSTIHGWC 134

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE------------- 187
           + ++++   ++   S F  + E     L+ +  +          + E             
Sbjct: 135 QRMLREHAFDSG--SLFTQSLETDHSDLLGQVMRDYWRRFCYGMHGEALGWVRSHWGSPD 192

Query: 188 -----LKKAFYEILEISNDEDIETLISDIISNRTA 217
                ++  F  +    ++++ + LI   +  R  
Sbjct: 193 ALLPRIRPLFGRLRAQQDEQEPQALIDAALQQRAD 227


>gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
          Length = 723

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 41/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71
            +D ++Q + E + A+       + A AGSGKT +L  R++ L  +      +++ +T T
Sbjct: 1   MLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA E+  R+                                       + +     G+
Sbjct: 59  NKAAGEIQQRID--------------------------------------LQLRHGKRGM 80

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    +++    +A +  +F + D +   +L++   +S 
Sbjct: 81  WIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 125


>gi|163785183|ref|ZP_02179869.1| Superfamily I DNA and RNA helicase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879550|gb|EDP73368.1| Superfamily I DNA and RNA helicase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 226

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 72/201 (35%), Gaps = 45/201 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S  ++ +++ + E +L  D      V A AGSGKT ++  +++ L          +L +
Sbjct: 1   MSSILEGLNEAQKEAVLYFD--SPLLVLAGAGSGKTRVITHKIMFLTQEFGIDIDRILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA+EM  RV   +                    K+PN                  
Sbjct: 59  TFTNKAASEMKERVKNALG-----------------LEKEPN------------------ 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+    I++           FAI DEE SKKL+    K  +    LD +   
Sbjct: 84  ---WITTFHSLSAKILRIEAQRLGYNRDFAIYDEEDSKKLL----KDIVEEANLDKDLYK 136

Query: 189 KKAFYEILEISNDEDIETLIS 209
            +    I+        E+L+ 
Sbjct: 137 PERLKNIISQIKQNLDESLLD 157


>gi|291060388|gb|ADD73123.1| ATP-dependent helicase PcrA [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 685

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 42/156 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  ++++           + A AGSGKT ++  ++  L+ +    P  +L +T T  A
Sbjct: 20  LSALNEAQRQAVCHYGSPLLILAGAGSGKTRVITTKIAHLIRSRQVRPEQILAVTFTNKA 79

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKV 133
           A EM  R                                           LE+   G  +
Sbjct: 80  AREMRTR----------------------------------------ACALESAAQGATI 99

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            T HA    I++++ +   +  HF+I D+   + L+
Sbjct: 100 CTFHALGVWILRRYAVRLGLNPHFSIYDDHDVRALL 135


>gi|91784748|ref|YP_559954.1| putative DNA helicase [Burkholderia xenovorans LB400]
 gi|91688702|gb|ABE31902.1| Putative DNA helicase [Burkholderia xenovorans LB400]
          Length = 708

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 38/173 (21%)

Query: 12  ETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +T   +++    Q  A +        P  +  V A AGSGKT+ L  RV  L++  A P 
Sbjct: 11  DTAAWLARLNDAQREAVEYGADTPTAPPGALLVIAGAGSGKTNTLAHRVANLVVNGADPR 70

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT ++ AA EM  RV  I  A                               L   
Sbjct: 71  RILLLTFSRRAALEMIRRVTRIAGA------------------------------ALGTR 100

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                G     T H+    +++++     +   F I D E S  L+   +   
Sbjct: 101 AALAQGLTWSGTFHSVGARLLREYADLIGLAPAFTINDREDSADLMNLVRHEL 153


>gi|15640012|ref|NP_219465.1| DNA helicase II (uvrD) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026251|ref|YP_001934023.1| DNA helicase II [Treponema pallidum subsp. pallidum SS14]
 gi|3323356|gb|AAC65978.1| DNA helicase II (uvrD) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018826|gb|ACD71444.1| DNA helicase II [Treponema pallidum subsp. pallidum SS14]
          Length = 670

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 42/156 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  ++++           + A AGSGKT ++  ++  L+ +    P  +L +T T  A
Sbjct: 5   LSALNEAQRQAVCHYGSPLLILAGAGSGKTRVITTKIAHLIRSRQVRPEQILAVTFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKV 133
           A EM  R                                           LE+   G  +
Sbjct: 65  AREMRTR----------------------------------------ACALESAAQGATI 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            T HA    I++++ +   +  HF+I D+   + L+
Sbjct: 85  CTFHALGVWILRRYAVRLGLNPHFSIYDDHDVRALL 120


>gi|308189989|ref|YP_003922920.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER]
 gi|307624731|gb|ADN69036.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER]
          Length = 723

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E ++ ++  + E L+  D      + A AGSGKT +L ++V  L+      P ++L +T 
Sbjct: 6   EILNSLNAEQKEALMYFD--GPLRIIAGAGSGKTRVLTRKVAYLINELGISPRSILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EMS RV + +   ++  D                                    
Sbjct: 64  TNKAANEMSERVKQYVGEEANQID------------------------------------ 87

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + T H+    I+++  +  N+++ F I DE   K +I +  K+
Sbjct: 88  --ICTFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130


>gi|319777271|ref|YP_004136922.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64]
 gi|318038346|gb|ADV34545.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64]
          Length = 723

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E ++ ++  + E L+  D      + A AGSGKT +L ++V  L+      P ++L +T 
Sbjct: 6   EILNSLNAEQKEALMYFD--GPLRIIAGAGSGKTRVLTRKVAYLINELGISPRSILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EMS RV + +   ++  D                                    
Sbjct: 64  TNKAANEMSERVKQYVGEEANQID------------------------------------ 87

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + T H+    I+++  +  N+++ F I DE   K +I +  K+
Sbjct: 88  --ICTFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130


>gi|209694270|ref|YP_002262198.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238]
 gi|208008221|emb|CAQ78366.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238]
          Length = 1208

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 17/175 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIASLYLRLLLGHGDENSRHSEELTVDKILVVTFTEAATAELRERIRA 81

Query: 85  IITAWSHLSDEILSAEITK-----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            I          +     K     I       SD   A H+L+    +     + TIH F
Sbjct: 82  KIHDARLAFARAVHKSDYKSGDPVIDPLLAAISDHKSAAHILLNAERSMDEASIFTIHGF 141

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           C+ ++ Q   E+   + F         KL+ +              + + ++ Y+
Sbjct: 142 CQRMLTQNAFESG--AQFESEFVTDQAKLMHQVAADFWRRSFYHLPKMVAESVYD 194


>gi|323453081|gb|EGB08953.1| hypothetical protein AURANDRAFT_63493 [Aureococcus anophagefferens]
          Length = 787

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 38/156 (24%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + + T+ +Q            + A AGSGKT  L +RV R + + A P  +L LT +  A
Sbjct: 1   MRALTEEQQAAVDYRFDAPLAIVAGAGSGKTETLTRRVARAISSGARPEGVLVLTFSNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ + +        E                                       
Sbjct: 61  ARELRGRLAKHLGEAVAARVECA------------------------------------- 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H+FC  ++++F  EA +   F+I  +   + L++
Sbjct: 84  TFHSFCLRLLRRFGREAGLGPDFSIFGDAAQRALVK 119


>gi|258593628|emb|CBE69969.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 991

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 41/200 (20%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66
            E +  + +     ++Q   +       + A AG+GKT ++  R+  L+    A P  +L
Sbjct: 9   SERNPAMGVEGLNAAQQAAVTHGDGPLLIIAGAGTGKTTVIAHRIAHLINSRRARPEQVL 68

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+ AAAEM  RV  ++      +                                 
Sbjct: 69  ALTFTEKAAAEMERRVDLLVPYGFTDT--------------------------------- 95

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T HAF + ++++  L   ++  F +    +     +E               
Sbjct: 96  -----WISTFHAFGDRVLREHALVLGLSPDFRLLTVPEQVIFFQEHLFELPLDYFRPLGS 150

Query: 187 ELK--KAFYEILEISNDEDI 204
            L+  +A  ++   + DED+
Sbjct: 151 PLRHVQALLQLFSRAKDEDV 170


>gi|238809942|dbj|BAH69732.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 723

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 41/165 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E ++ ++  + E L+  D      + A AGSGKT +L ++V  L+      P ++L +T 
Sbjct: 6   EILNSLNAEQKEALMYFD--GPLRIIAGAGSGKTRVLTRKVAYLINELGISPRSILAVTF 63

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EMS RV + +                                       E    
Sbjct: 64  TNKAANEMSERVKQYVG--------------------------------------EEANQ 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + + T H+    I+++  +  N+++ F I DE   K +I +  K+
Sbjct: 86  IDICTFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130


>gi|146284345|ref|YP_001174498.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501]
 gi|145572550|gb|ABP81656.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501]
          Length = 1182

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 9/151 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L     RLLL        +L +T+T AA AE+  R+   +     + 
Sbjct: 15  LIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELRERIRARLADLLAVY 74

Query: 94  DEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           D   S++  + ++  + P+ +    +R  L+  +       + TIH FC+  +Q    EA
Sbjct: 75  DGTPSSDDFLNRLHARYPDDA----SRRRLLLAVHGFDEAAIFTIHGFCQRALQDAAFEA 130

Query: 152 N--ITSHFAIADEEQSKKLIEEAKKSTLASI 180
                S     D E    L+ +A +S LA  
Sbjct: 131 GGDFDSELTADDREIIDALLADAWRSELADA 161


>gi|71909490|ref|YP_287077.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB]
 gi|71849111|gb|AAZ48607.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB]
          Length = 663

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 39/162 (24%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +S    +Q  A         V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 1   MSGLNPQQREAIHYLDGPLLVLAGAGSGKTRVITQKIAYLVQDCGFQPRNIAAITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +I++                                           L++ 
Sbjct: 61  AKEMQERIGKILSK-------------------------------------PQADDLQIS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I+++          F+I D      +I EA K+ 
Sbjct: 84  TFHSLGVRILREEAKALGYKPRFSIFDSADCAGIISEAAKTV 125


>gi|251772975|gb|EES53533.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum]
          Length = 1166

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 6/154 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT  L Q  L  +L+      +L +T T+AA  E+  R+  +++     + 
Sbjct: 17  LIEASAGTGKTFALTQLYLAAVLSGVPVEQILVVTFTEAATDELRGRLRTLLSHARSHAL 76

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
            +                 +     LL   L       V TIH+FC  +++++  E    
Sbjct: 77  GVAPPPEILPLVADVRPEHL----TLLSRALFDFDRAPVATIHSFCRRVLREYAFE--FD 130

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           + F++  E   +   + + +     ++   +  +
Sbjct: 131 APFSLELESSDRAFKKASVREVWRRLVYREDPRI 164


>gi|298372545|ref|ZP_06982535.1| helicase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275449|gb|EFI17000.1| helicase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 1036

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 7/155 (4%)

Query: 34  AWVSANAGSGKTHILVQR-VLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH 91
             + A+AGSGKT+ L  + +LRL++        +L +T TK A AEM  R+L  + + ++
Sbjct: 2   LILKASAGSGKTYNLAMQFILRLVVEGDEAFRHILAVTFTKDATAEMKLRILADLYSIAN 61

Query: 92  LSDEILSAEITKIQGKKPNKSDMS---KARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            +++ L   I +    + + +D      A   L+ IL   G   V TI +F + +++   
Sbjct: 62  GNNQSLIDNIKRELPGRRSITDEQIKVVAHRALLKILHDYGNFNVGTIDSFFQRVLRNLA 121

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            E    S F I  +    K + EA +  +A    D
Sbjct: 122 RELGKGSRFNI--DLNDIKAVAEAVREVIAQAHND 154


>gi|239917997|ref|YP_002957555.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|281415827|ref|ZP_06247569.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|239839204|gb|ACS31001.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
          Length = 1176

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           +S ++ +  + L   T+ +  + + P     V A AGSGKT  +  RV+ L+      P 
Sbjct: 22  HSPEDIAARLRLPPPTEEQAEVVTAPLTPRLVLAGAGSGKTATMADRVVWLVANGLVRPD 81

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T+ AA E++ R+   + A      E        I G      D+         
Sbjct: 82  EVLGVTFTRKAAGELAERINGRVDALLRSGLE--------IPGFDGEPEDL--------- 124

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                G   V T H++  A+++   L   +     +     + +L+    +S
Sbjct: 125 -----GRASVSTYHSYAGALVRDHGLRIGVEPEARLLGGADAHRLMGAVVRS 171


>gi|291542836|emb|CBL15946.1| ATP-dependent DNA helicase PcrA [Ruminococcus bromii L2-63]
          Length = 749

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 41/161 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++  + + +  ++      + A AGSGKT +LV R+  +L      P  +L +T T  AA
Sbjct: 13  MNDMQKQAVFCTE--GPLLILAGAGSGKTTVLVNRIAYILQCELCKPWQILAITFTNKAA 70

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+   +                                            +   T
Sbjct: 71  GELKERICAAVPEGG--------------------------------------ADIWAAT 92

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+ C  I++++      TSHF +   +  KKL+++  K  
Sbjct: 93  FHSTCARILRRYGDRIGYTSHFTVYGTDDQKKLVKDILKQL 133


>gi|108757579|ref|YP_629768.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622]
 gi|108461459|gb|ABF86644.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622]
          Length = 783

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 41/168 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
             S  ++ ++  + E +L  D      V + AGSGKT ++ +RV  L+ + N +P  +L 
Sbjct: 7   HESALLEDLNAPQREAVLHGD--GPLLVLSGAGSGKTRVITRRVAYLVKVHNVYPWRILA 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  R+++++ A                                       
Sbjct: 65  VTFTNKAAREMRERLVQLLGA--------------------------------------Q 86

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              L V T H+    I+++      +T  F I D+     +++ A + 
Sbjct: 87  ANELVVSTFHSAAAQILRREAEHVGLTRSFVIYDDSDQLNVVKRAMRE 134


>gi|308049020|ref|YP_003912586.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM
           9799]
 gi|307631210|gb|ADN75512.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM
           9799]
          Length = 1218

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 14/173 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRL+L +           P  +L +T TKAA  E+  R+   
Sbjct: 17  LIEASAGTGKTYTIAALYLRLVLGHGGSAAHPHPLTPEQILVVTFTKAATEELKDRIRAR 76

Query: 86  ITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +   +     +   +  +  +    P +     A  +L    +      V TIH +C+ +
Sbjct: 77  LVEGAACFRGLAEPDPYLASLMADFPAEQHPHCAL-VLDQAAQLMDLAAVHTIHGWCQRM 135

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           +++   ++   S F+   E  +  L EEA +      +      +  A   + 
Sbjct: 136 LREHAFDSG--SLFSQEMEADTTPLREEAVRDYWRRFLYPQPRAVLAAITGLY 186


>gi|222100309|ref|YP_002534877.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|221572699|gb|ACM23511.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 649

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 39/178 (21%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +  +     EQ  A  +      V A  GSGKT ++  ++  LL     PS +L +T T+
Sbjct: 14  LSFLEDLDEEQRKAVVESEGRCIVIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTR 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R           +  +   E++++                            
Sbjct: 74  AAAREMVER-----------AKMVTGRELSEMLA-------------------------- 96

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             T H  C   ++++     +  +++I D E S+ L+  A+   L     +  +   +
Sbjct: 97  -GTFHHVCNYFLRKYAPYVGLDRNYSILDREDSESLMRHARSKFLERKGREERKNFPQ 153


>gi|260752918|ref|YP_003225811.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552281|gb|ACV75227.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 768

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 43/198 (21%)

Query: 9   EHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           E     D +++   EQ  +      +  V A AG+GKT  L  R+  L+    A PS +L
Sbjct: 12  ETPPEPDYLARLNPEQKEVVRTTEGALLVLAGAGTGKTAALTARLAYLVETLKAWPSQIL 71

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  RV +++ + +                                    
Sbjct: 72  AVTFTNKAAREMQMRVGDLLGSQAENMP-------------------------------- 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T H+    ++++      + S F I D +   +L+++     +    +D  +
Sbjct: 100 -----WLGTFHSIAAKMLRRHAELVGLKSDFIILDTDDQIRLLKQ----LIQGQGIDEKQ 150

Query: 187 ELKKAFYEILEISNDEDI 204
              K    I++   +  +
Sbjct: 151 WPAKQLAGIIDRWKNRGL 168


>gi|238025782|ref|YP_002910013.1| UvrD/REP helicase [Burkholderia glumae BGR1]
 gi|237874976|gb|ACR27309.1| UvrD/REP helicase [Burkholderia glumae BGR1]
          Length = 694

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNAAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +++E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMVQE 133


>gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
 gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
          Length = 865

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 43/153 (28%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + ++ +  +  R+  + A AG+GKT+ L  R+++LL    A P  +LCLT T  A  EM
Sbjct: 12  NQQQKYVVDELGRNILLLAAAGTGKTNTLALRIVKLLREGRAAPEQVLCLTFTNRACKEM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV--QTI 136
             R++  +                                         P GLK+  +T 
Sbjct: 72  KERIVSAVG----------------------------------------PEGLKIEVRTF 91

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           H+FC  ++Q F    ++ S F I DE+  ++L+
Sbjct: 92  HSFCYELIQAFVKTTDLPSGFVIYDEDDCRELL 124


>gi|319902330|ref|YP_004162058.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108]
 gi|319417361|gb|ADV44472.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108]
          Length = 1104

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 27/193 (13%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW--- 89
               A+AGSGKT  L    ++ L+ N H    +L +T T  A AEM  R+L+ +      
Sbjct: 4   LVYKASAGSGKTFTLAVEYIKHLIQNPHAYRQILAVTFTNKATAEMKERILQQLYGIWKG 63

Query: 90  SHLSDEILSAEITKIQGKKPN----------------KSDMSKARHLLITILETPGGLKV 133
              SD  LS     +  +K N                +    +A   L  +L      +V
Sbjct: 64  DPASDAYLSRIKEDLGKRKDNLSETEVISPFTAGSEDEELRKRAGMALQYMLHDYSRFRV 123

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           +TI +F +++M+    E  ++ +  I  E  + +++ +A  S +  +             
Sbjct: 124 ETIDSFFQSVMRNLARELELSPNLNI--ELNNTEVLSDAVDSLIEKL-----TATSPVLA 176

Query: 194 EILEISNDEDIET 206
            +LE  N+   + 
Sbjct: 177 WLLEYINERIADD 189


>gi|225873408|ref|YP_002754867.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793677|gb|ACO33767.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 943

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 45/171 (26%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +D ++    ++    +      + A AGSGKT ++  R+  L+      P ++L +T 
Sbjct: 3   QLLDKLN--PQQRAGVENVDGPVLILAGAGSGKTRVITHRIAYLIQERGVAPDSILAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM+ RV + +   S L+  +L+                                
Sbjct: 61  TNKAAKEMAERV-DALIGHSTLAKPVLA-------------------------------- 87

Query: 131 LKVQTIHAFCEAIMQQFPLEA-----NITSHFAIADEEQSKKLIEEAKKST 176
               T H+FC  ++++           +T  FAI DE   + L+++  +  
Sbjct: 88  ----TFHSFCVRMLRRDIEALRIGNEGLTKTFAIYDESDQQSLVKQIMRRM 134


>gi|327482729|gb|AEA86039.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri DSM
           4166]
          Length = 1182

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 9/151 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L     RLLL        +L +T+T AA AE+  R+   +     + 
Sbjct: 15  LIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELRERIRARLADLLAVY 74

Query: 94  DEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           D   S++  + ++  + P+ +    +R  L+  +       + TIH FC+  +Q    EA
Sbjct: 75  DGTPSSDDFLNRLHARYPDDA----SRRRLLLAVHGFDEAAIFTIHGFCQRALQDAAFEA 130

Query: 152 N--ITSHFAIADEEQSKKLIEEAKKSTLASI 180
                S     D E    L+ +A +S LA  
Sbjct: 131 GGDFDSELTADDREIIDALLADAWRSELADA 161


>gi|171915021|ref|ZP_02930491.1| ATP-dependent DNA helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 665

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 39/170 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S   D ++  + E +          + A AG+GKT  +  R+  ++     PS +L +T
Sbjct: 1   MSFAFDQLNLPQREAVKTIH--GPVLILAGAGTGKTRTVTMRIAHMVDEGISPSNILSVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++                                           
Sbjct: 59  FTNKAANEMRERVKDMLGPAKGKD------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            + + T HAFC  +++         ++F+I  + +   L+++     +  
Sbjct: 83  -ITLGTFHAFCMKLLRVHAEAIGYKTNFSIYSQSEQISLVKKILARLMTK 131


>gi|120436669|ref|YP_862355.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella
           forsetii KT0803]
 gi|117578819|emb|CAL67288.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella
           forsetii KT0803]
          Length = 787

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 38/175 (21%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Y + F+        +++    Q            V A AGSGKT +L  R+  L+     
Sbjct: 5   YLSVFKNGENLEAYLAELNDAQRAPVLQKDGPMIVIAGAGSGKTRVLTYRIAYLMNQGVD 64

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
              +L LT T  AA EM  R+ +I+ +    +                            
Sbjct: 65  AFNILSLTFTNKAAREMKQRISKIVGSSEAKN---------------------------- 96

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    L + T H+    I++    +    S+F I D + S  +I    K  
Sbjct: 97  ---------LWMGTFHSVFAKILRFEADKMGYPSNFTIYDTQDSHSVIRAIIKEM 142


>gi|160875207|ref|YP_001554523.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS195]
 gi|160860729|gb|ABX49263.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS195]
 gi|315267400|gb|ADT94253.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS678]
          Length = 1273

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 17/184 (9%)

Query: 10  HSETIDLISQTKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP 62
            SE I L +        A DP       S  + A+AG+GKT+ +    LRLLL +  A P
Sbjct: 1   MSEQIQLNAAALHSAPQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAP 60

Query: 63  ---STLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
                +L +T T AA  E+  R+   I  A+       ++    +       +S+ + A 
Sbjct: 61  LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL 120

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKST 176
                 L++     + TIH FC+ I+     E+++   S F + D E     +  A +  
Sbjct: 121 RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSE----FLHHAVRDF 176

Query: 177 LASI 180
               
Sbjct: 177 WREA 180


>gi|290580396|ref|YP_003484788.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254997295|dbj|BAH87896.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 758

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 44/193 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L    + +            + A AGSGKT +L  R+  L+     +P  +L +T T  A
Sbjct: 5   LHGMNEKQAQAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFINPWNILAITFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R      A +  + E L                                   + 
Sbjct: 65  ACEMKERAF----ALNAATQETL-----------------------------------IA 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I+++         +F I D  + + L++   K+      +D+ +  ++A   
Sbjct: 86  TFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMKRIFKNF----NIDSKKWNERAVLA 141

Query: 195 ILEISNDEDIETL 207
            +  + ++ ++ +
Sbjct: 142 AISNAKNDLLDEI 154


>gi|148285059|ref|YP_001249149.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong]
 gi|146740498|emb|CAM81056.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong]
          Length = 716

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 40/156 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L+     ++           V A AG+GKT ++  R+  ++    A P  +L +T T  A
Sbjct: 5   LLDLNPEQREAVITTNGPLLVLAGAGTGKTRVITYRIAYIIDQFMASPEEILAVTFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV E                                       I     G+ + 
Sbjct: 65  ATEMQSRVAE---------------------------------------ITNNTTGIYIG 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T HA    I++       +TS F+I D+ +  ++I+
Sbjct: 86  TFHAIATKILKAHAELVGLTSSFSIIDQSEQVRVIK 121


>gi|293606508|ref|ZP_06688866.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter
           piechaudii ATCC 43553]
 gi|292815131|gb|EFF74254.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter
           piechaudii ATCC 43553]
          Length = 699

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 37/169 (21%)

Query: 15  DLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           D ++     Q  A++              V A AGSGKT+ L  RV  L+L  A P  +L
Sbjct: 13  DPLADLNPAQREAAEFGVGATAGDDGPLLVIAGAGSGKTNTLAHRVAHLILNGADPQRML 72

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT ++ AA EM  RV  ++    +L                                 +
Sbjct: 73  LLTFSRRAAQEMDRRVGSVLQRVMNLRGSQ-----------------------------Q 103

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            P      T HA    +++   L   ++  F I D   ++ L+   +  
Sbjct: 104 APSLPWAGTFHAIGARLLRDCALRIGLSEAFTIHDRGDAEDLMGMVRHE 152


>gi|237750192|ref|ZP_04580672.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374086|gb|EEO24477.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 276

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 28/193 (14%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           T   +++A+AGSGKT  L  R + LL      + +L LT TK AA EM  R+ + +    
Sbjct: 6   TNHIFLNASAGSGKTFALCVRYIALLFQGVPANEILTLTFTKKAANEMKERITQNLFLLY 65

Query: 91  HLSDEILSAE------------------ITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
              D  L                     I  + G    K  +      +          K
Sbjct: 66  ITQDSKLKEAKEIYKENYKKILKQRDDIIESLLGYNLTKEHIEAQTTKVYKHFLQADK-K 124

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TI +F   ++++F     I   F    + Q   L +E  +  L  I  D++       
Sbjct: 125 ISTIDSFYTQMLRKFAFFIGIRRDF----DMQESGLDDEIFECFLEKIYTDSHLH----- 175

Query: 193 YEILEISNDEDIE 205
             +L ++ND +I 
Sbjct: 176 ETLLSLTNDLNIH 188


>gi|77920551|ref|YP_358366.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77546634|gb|ABA90196.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
          Length = 678

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTK 72
           +DL +  + ++           + A AGSGKT ++  R+  LL     PS  +L +T T 
Sbjct: 1   MDLSALNEQQRAAVRHTEGPLLLLAGAGSGKTRVITSRIAFLLQDRGVPSQAILAVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  I+                                       +   G+ 
Sbjct: 61  KAAREMRERVEGIVGR-------------------------------------KQAKGMV 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T HA C  I+++   +     +F+I       +LI +  +  
Sbjct: 84  ISTFHALCVRILKEDIEQLGYKKNFSIYGGADQLRLIRDLLQEV 127


>gi|330815075|ref|YP_004358780.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
 gi|327367468|gb|AEA58824.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
          Length = 694

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNAAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  RV +++   +  +      ++                             L V 
Sbjct: 62  AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q      +   F+I D +    +++E
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMVQE 133


>gi|317502698|ref|ZP_07960810.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606]
 gi|315666184|gb|EFV05739.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606]
          Length = 761

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 39/160 (24%)

Query: 19  QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76
           +    Q  A +       V A AGSGKT +L  ++  L+      P ++L LT T  AA 
Sbjct: 4   ELNDGQRAAVEYCDGPQLVIAGAGSGKTRVLTYKIAYLIDEKQYEPWSILALTFTNKAAN 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM +R+  ++                             + R+L +            T 
Sbjct: 64  EMRNRIARVVGQ--------------------------DRTRYLYM-----------GTF 86

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+    I++    +   +  F I DE  S+ L++   K  
Sbjct: 87  HSIFSRILRVEAEKLGYSKQFTIYDESDSRSLLKSIIKEM 126


>gi|37528484|ref|NP_931829.1| ATP-dependent DNA helicase Rep [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787922|emb|CAE17039.1| ATP-dependent DNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 675

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRTCGYQPRHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKEAK-------------------------------------GLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L+++     L     ++ + L+K    I   
Sbjct: 87  LGLEIIKREYKTLGMKSNFSLFDDQDQMALLKDLTADLLE----EDKDLLQKLISTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|283769206|ref|ZP_06342110.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219]
 gi|283104182|gb|EFC05561.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219]
          Length = 710

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D+ S    ++    D  +   V A AGSGKT +L  R+  L+      PS +L +T T
Sbjct: 1   MLDIQSLNPQQKEAVLDEHQYLRVIAGAGSGKTRVLTMRIAYLMEEKKVWPSKILAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RVL ++                                             
Sbjct: 61  NKAAREMETRVLSLMKEEVSKP-------------------------------------- 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            V TIH+ C  I++Q          F I D E  K +++E  K 
Sbjct: 83  TVCTIHSLCVRILRQEIEAMGYPKSFTILDVEDQKAILKEYYKE 126


>gi|59711189|ref|YP_203965.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri
           ES114]
 gi|59479290|gb|AAW85077.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri
           ES114]
          Length = 1208

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 22/192 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIASLYLRLLLGHGDEGTRHQEELTVDRILVVTFTEAATAELRERIRA 81

Query: 85  IITAWSHLSDEILSAEITK-----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            I          +     K     I     +  D   A  +L+    +     + TIH F
Sbjct: 82  KIHDARLAFARAVHNNGYKSGDPVIDPLLASIGDHKSAAQILLNAERSMDEASIFTIHGF 141

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C+ ++ Q   E+   + F         KL+ +              + + ++ Y+     
Sbjct: 142 CQRMLTQNAFESG--AQFESEFVTDQAKLMHQVAADFWRRSFYHLPKMVAESVYDCWSSP 199

Query: 200 NDEDIETLISDI 211
           +      L+ D+
Sbjct: 200 S-----ALLGDM 206


>gi|296115456|ref|ZP_06834090.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978029|gb|EFG84773.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 700

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 45/175 (25%)

Query: 15  DLISQTKSEQLLASDPTR----------SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           D +S+    Q  A                  V A AGSGKT+ L  RV  L+ + A P  
Sbjct: 13  DYLSRLNDAQRQAVTHGTGVSPGGADSSPLLVIAGAGSGKTNTLAHRVAHLIASGADPRR 72

Query: 65  LLCLTHTKAAAAEMS---HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           +L LT ++ A+ EM+    R+ + +                                  L
Sbjct: 73  ILLLTFSRRASVEMTRCVERICKTVLGDKAGP---------------------------L 105

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              L         T H+    +++++  +  +   F+I D E S  L+   +   
Sbjct: 106 ADAL-----AWAGTFHSIGARLLREYAQQIGMDPAFSIHDREDSADLMNLIRHDL 155


>gi|163816456|ref|ZP_02207820.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759]
 gi|158448156|gb|EDP25151.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759]
          Length = 768

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 41/163 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           + +S     QL A   T     + A AG+GKT  L  R   L+       S +LC+T T 
Sbjct: 56  NYLSTLNERQLDAVTTTEGYVRIIAGAGTGKTKALTHRYAYLVNELGISTSNILCVTFTN 115

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EMS R+ ++I                                              
Sbjct: 116 KAAREMSKRIRQMIGDSDTGY--------------------------------------- 136

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T H FC  ++++     N   +F + D+E ++++++   ++
Sbjct: 137 ICTFHGFCVKLLREDIHAINFPQNFVVMDDEDTEEILKTVYEN 179


>gi|241896132|ref|ZP_04783428.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC
           33313]
 gi|241870646|gb|EER74397.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC
           33313]
          Length = 759

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 40/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            +  +  ++  ++E ++ ++      + A AGSGKT +L  RV  L+   +  P  +L +
Sbjct: 1   MNPLLAGMNDKQAEAVMTTE--GPLLIMAGAGSGKTRVLTHRVAHLIQDLDVLPWRILAI 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+ +++                                          
Sbjct: 59  TFTNKAAREMKERISQLVEE-------------------------------------SDA 81

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + V T HA    I+++   +      F+I D    + LI+   K  
Sbjct: 82  EAVWVSTFHALAVRILRRDIDKLGYKKDFSIIDASAQRTLIKRILKDF 129


>gi|217077082|ref|YP_002334798.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B]
 gi|217036935|gb|ACJ75457.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B]
          Length = 632

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 39/166 (23%)

Query: 13  TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID  ++   EQ  A  +      V A  GSGKT ++  ++  L+ +   PS +L +T T
Sbjct: 1   MIDFKAELDDEQYEAVVNSKGKTLVIAGPGSGKTRVITYKIAHLISSGVKPSEILLVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           KAAA EM                                   + +A+ +  + L+   G+
Sbjct: 61  KAAAKEM-----------------------------------LQRAKLVSRSTLD---GI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
              T H  C   ++++     +  +F I D E +K ++E A+   +
Sbjct: 83  TAGTFHHICNLFLRKYGTIIGLKPNFTILDSEDAKDVMESARSQII 128


>gi|297571780|ref|YP_003697554.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932127|gb|ADH92935.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 1156

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 7/153 (4%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  + +   ++  V A AGSGKT  +  R+  LL +  A P+ +L LT T+ AA E
Sbjct: 14  PTDEQAAVITSDHQATLVIAGAGSGKTATMANRIAWLLASGKAQPNHILGLTFTRKAAGE 73

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTI 136
           ++ RV + I   +       S+ +T       N  D  + ++ + + +  T     + T 
Sbjct: 74  LAERVNKKIREITRRGIYTPSSMLT-----DGNIGDGEEGKNQIASAVHDTLSRPTISTY 128

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           ++F   I   + +         +  E +  +L+
Sbjct: 129 NSFASQIATSYAMLIGEDPGARLMSEAERYQLM 161


>gi|153000571|ref|YP_001366252.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS185]
 gi|151365189|gb|ABS08189.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS185]
          Length = 1273

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 17/184 (9%)

Query: 10  HSETIDLISQTKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP 62
            SE I L +        A DP       S  + A+AG+GKT+ +    LRLLL +  A P
Sbjct: 1   MSEQIQLNAAALHSAPQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAP 60

Query: 63  ---STLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
                +L +T T AA  E+  R+   I  A+       ++    +       +S+ + A 
Sbjct: 61  LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL 120

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKST 176
                 L++     + TIH FC+ I+     E+++   S F + D E     +  A +  
Sbjct: 121 RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSE----FLHHAVRDF 176

Query: 177 LASI 180
               
Sbjct: 177 WREA 180


>gi|326435120|gb|EGD80690.1| DNA and RNA helicase [Salpingoeca sp. ATCC 50818]
          Length = 1191

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 38/163 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           +D+    + +         +  V A  GSGKT ++  RV  LL+ +   P  ++ +T T 
Sbjct: 111 LDVTGLNEQQCEAVCSTAPALLVLAGPGSGKTRVITSRVAWLLVNDTCSPHGVVLVTFTN 170

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                                       E    L 
Sbjct: 171 KAANEMRTRVETLVGR-------------------------------------EKAAALH 193

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T H+     +++   +  + S++ I D+  +++++E+  KS
Sbjct: 194 MGTFHSIANKFLRKHAAKVGLPSNYTIIDQSDAQRVVEKLMKS 236


>gi|114319965|ref|YP_741648.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226359|gb|ABI56158.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 1242

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 16/164 (9%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T+AA  E+  R+
Sbjct: 18  GSRLIEASAGTGKTFTIAALYLRLVLGHGEQRAGGGPLVPPQILVVTFTEAATRELRDRI 77

Query: 83  LEIITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            E ++  +    +         +  ++ +       + AR L     E      V TIH+
Sbjct: 78  RERLSQAAAAFRDPARYPDDPVLPALRAEYDEHERPAMARRL-ELAAEWMDESAVSTIHS 136

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           +C  ++++   ++   S F    E     L+ EA +    S + 
Sbjct: 137 WCYRMLREHAFDSG--SLFTQDLEADQTALLAEAVRDYWRSFLY 178


>gi|121603267|ref|YP_980596.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120592236|gb|ABM35675.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 709

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 38/151 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++Q   +       V A AGSGKT ++  ++ RL+     P  +  +T T  AAAEM  R
Sbjct: 17  AQQEAVNYLHGPCLVLAGAGSGKTRVITHKIGRLIQMGMKPEQIAAITFTNKAAAEMRER 76

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              +I   +                                       G+ + T HA   
Sbjct: 77  AKSLIGKSAK--------------------------------------GVLICTFHALGV 98

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            +++Q      +   F+I D +    ++++A
Sbjct: 99  RMLRQDGAALGLKPQFSILDSDDVTSILKDA 129


>gi|212635558|ref|YP_002312083.1| exodeoxyribonuclease V subunit beta [Shewanella piezotolerans WP3]
 gi|212557042|gb|ACJ29496.1| Exodeoxyribonuclease V, beta subunit [Shewanella piezotolerans WP3]
          Length = 1232

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 14/181 (7%)

Query: 9   EHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---- 62
           + SE  D  SQ  T+    L      S  + A+AG+GKT+ +    +RLLL +       
Sbjct: 13  KLSELTDGQSQFVTEPLNTLTLPFGGSRLIEASAGTGKTYTIAGLYVRLLLGHGTEQALS 72

Query: 63  -STLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
              +L +T T AA  E+  R+ + I  A+       +  E+      +  +SD + AR  
Sbjct: 73  CEQILVVTFTNAATGELRDRIRKKIQLAYRCFIGLKVDDELISQLYNETRESDKALARKR 132

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178
           L   L++     + TIH FC+ I+     E+++   S F + D E     +  A +    
Sbjct: 133 LDLALKSLDEAAIFTIHGFCQRILADMAFESSLLFESEFTLDDSE----FLHHAVRDFWR 188

Query: 179 S 179
            
Sbjct: 189 E 189


>gi|187925846|ref|YP_001897488.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187717040|gb|ACD18264.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 696

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 28/162 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++   +  +      ++                             L V 
Sbjct: 62  ALEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++Q      +   F+I D +    +I+E   ST
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138


>gi|114766742|ref|ZP_01445680.1| ATP-dependent DNA helicase [Pelagibaca bermudensis HTCC2601]
 gi|114541061|gb|EAU44117.1| ATP-dependent DNA helicase [Roseovarius sp. HTCC2601]
          Length = 680

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 35/168 (20%)

Query: 13  TIDLISQTKSEQL----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            +D ++  +   +    +         V A AGSGKT+ L  RV  LL+  A P  +L +
Sbjct: 6   YLDKLNDNQRAAVEFGVVRDAVAPPLLVIAGAGSGKTNTLAHRVAHLLVNGADPQRILLM 65

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AA E++ RV  I                 +  G+      ++ A           
Sbjct: 66  TFSRRAATELTRRVARI---------------TEQAMGRGVAAEALTWA----------- 99

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 T H     I+++  L   +   F+I D E S  L+   + + 
Sbjct: 100 -----GTFHGIGARILREHALAIGLHPEFSIHDREDSADLMNLCRNAL 142


>gi|91785713|ref|YP_560919.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400]
 gi|91689667|gb|ABE32867.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400]
          Length = 696

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 28/162 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++   +  +      ++                             L V 
Sbjct: 62  ALEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++Q      +   F+I D +    +I+E   ST
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138


>gi|296157515|ref|ZP_06840350.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295892287|gb|EFG72070.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 696

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 28/162 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            ++  ++E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++   +  +      ++                             L V 
Sbjct: 62  ALEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I++Q      +   F+I D +    +I+E   ST
Sbjct: 97  TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138


>gi|183602118|ref|ZP_02963486.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219683030|ref|YP_002469413.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191350|ref|YP_002968744.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196756|ref|YP_002970311.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218611|gb|EDT89254.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219620680|gb|ACL28837.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249742|gb|ACS46682.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251310|gb|ACS48249.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289177477|gb|ADC84723.1| Putative ATP-dependent DNA helicase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794343|gb|ADG33878.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 1378

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++++ +D   +  V A AGSGKT  + +RV+ L+     P  +L LT T  AA+E+ 
Sbjct: 11  AEQQRIVDADANANVIVVAGAGSGKTFTMTERVIHLIHEGVPPEHILGLTFTNKAASELL 70

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +   +            ++   KP+                      V+T  AF
Sbjct: 71  SRVSKAVLDDARERAREGGPHPARLAFMKPD----------------------VRTYDAF 108

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            ++I++Q+ L               ++++I       +  I
Sbjct: 109 FQSIVRQYGLLVGFDPQTQPLSVAGARQIIASVVGRHVDEI 149


>gi|91775555|ref|YP_545311.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT]
 gi|91709542|gb|ABE49470.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT]
          Length = 690

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 39/171 (22%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           I++++    +Q  A         V A AGSGKT ++ Q++  L+      P  +  +T T
Sbjct: 21  INMLNSMNPQQREAVKYLDGPLLVLAGAGSGKTRVITQKISYLIEQCGYAPKEIAAITFT 80

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                           GL
Sbjct: 81  NKAAREMQERVGQLLQGT-------------------------------------NAKGL 103

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            + T H+    +++Q          F+I D   S K++ +A  +T   ++ 
Sbjct: 104 TIATFHSLGLQMLRQEAELLGYKPQFSILDSSDSFKILSDALATTDKQLLR 154


>gi|239905341|ref|YP_002952080.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239795205|dbj|BAH74194.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 739

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 40/211 (18%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D  ++    QL A S       V A AGSGKT  +V R+  L+L    P+++L LT T+
Sbjct: 1   MDCTNELNPAQLEAVSTTEGPVLVIAGAGSGKTRTIVYRLAHLVLKGVEPASILLLTFTR 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM                                   +++A  LL    +   G+ 
Sbjct: 61  KAAQEM-----------------------------------LTRAGLLLALGAQGISGVA 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T HAF  A ++++   A     F   D    + ++ + K   L     D +   K A 
Sbjct: 86  GGTFHAFAFAALRRYSEAAGFPGGFTCLDAADCEDILGQCKDR-LGLGKGDRSFPRKSAI 144

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFF 223
             +L  + ++++E  + D+I+ R A  L+ +
Sbjct: 145 LGLLSKARNKELE--VGDVIA-REAFHLLPY 172


>gi|325108966|ref|YP_004270034.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305]
 gi|324969234|gb|ADY60012.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305]
          Length = 665

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 38/161 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L S   S++  A        V A AG+GKT ++  R+  L+        +L +T T  AA
Sbjct: 7   LESLNPSQREAAETREGPLLVLAGAGTGKTRVITTRMALLIGTGTQADRILSVTFTNKAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM+ R+  I+                                              + T
Sbjct: 67  KEMAQRLQAILGRRKTKP--------------------------------------WIST 88

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            HA C  I++Q        S F I D    + L  +  +S 
Sbjct: 89  FHALCVRILRQEIEALGYRSTFTIVDRGDQESLARDVLRSI 129


>gi|33152201|ref|NP_873554.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP]
 gi|33148423|gb|AAP95943.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP]
          Length = 1198

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 11/181 (6%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHR 81
           LA     ++ + A+AG+GKT  +    LRLLL     P     +L +T TKAA  E+  R
Sbjct: 7   LALPLNGTSLIEASAGTGKTFTMANLYLRLLLGIGCQPLTVEEILVVTFTKAATEELRDR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNK-----SDMSKARHLLITILETPGGLKVQTI 136
           +   I A      +    +I + +    ++      ++ +A+  L           + TI
Sbjct: 67  IRRNIKACREFFCDYDPNQIDQNKDNFYSQLYERVDNLDEAKLRLRIAEREIDLASIFTI 126

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+FC+ I+ QF  ++ I   F    +     L+++  +          + +  +  Y  L
Sbjct: 127 HSFCQKILSQFAFDSGI--RFDNDWQTDESHLLQQLSEEIWREQFYPLSLQECEIIYNEL 184

Query: 197 E 197
           E
Sbjct: 185 E 185


>gi|317403517|gb|EFV84017.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 696

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 62/183 (33%), Gaps = 37/183 (20%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVL 53
           M   NS    S   D ++     Q  A++             V A AGSGKT+ L  RV 
Sbjct: 1   MSDQNSAHPSSRP-DPLADLNPAQREAAEFGVGGAGDDGPLLVIAGAGSGKTNTLAHRVA 59

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
            L+L  A P  +L LT ++ AA EM  RV  ++    +L                     
Sbjct: 60  HLILNGADPQRMLLLTFSRRAAQEMERRVGSVLQRVMNLRGTQ----------------- 102

Query: 114 MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                       + P      T HA    +++       ++  F I D   ++ L+   +
Sbjct: 103 ------------QAPSLPWAGTFHAIGARLLRDCAQRIGLSEAFTIHDRGDAEDLMGMVR 150

Query: 174 KST 176
              
Sbjct: 151 HEL 153


>gi|189485729|ref|YP_001956670.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287688|dbj|BAG14209.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 772

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 38/159 (23%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +   S+            + A AG+GKT ++  R+  LL       ++L +T T  AA+E
Sbjct: 8   NLNPSQAEAVLCTEGPLIIFAGAGTGKTRVITHRIAYLLSLGVVSQSVLAVTFTNKAASE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ ++I                                            + V T H
Sbjct: 68  MKKRISDLIPGVGV--------------------------------------NVWVSTFH 89

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           +FC   ++      ++  +F I D    K ++++  K  
Sbjct: 90  SFCAHFLRAEASRISLNPYFLIYDFIDQKSVVKDCVKEL 128


>gi|146417360|ref|XP_001484649.1| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 830

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 38/177 (21%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           E +  +++ +   + A   +R   V A  G+GKT +LV RV  LLL     P  ++  T 
Sbjct: 7   ELLSSLNENQRTAVTAPLNSR-ICVIAGPGTGKTKVLVSRVAHLLLHDQIPPQQIIVTTF 65

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TK AA EM  R+  ++                                            
Sbjct: 66  TKKAANEMVLRLRLVLQDTDI-----------------------------------DVNR 90

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           L V T H+ C  I++++     +   F IADE+ S  L+EE  +    +   +++E+
Sbjct: 91  LMVGTFHSICYRIIKKYGHLIGLE-GFTIADEKDSIHLLEECLEKIGKNPQQNDDEK 146


>gi|271500543|ref|YP_003333568.1| exodeoxyribonuclease V subunit beta [Dickeya dadantii Ech586]
 gi|270344098|gb|ACZ76863.1| exodeoxyribonuclease V, beta subunit [Dickeya dadantii Ech586]
          Length = 1230

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 85/216 (39%), Gaps = 37/216 (17%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    +RL+L +          +P  +L +T T AA  E+  R+
Sbjct: 19  GSRLIEASAGTGKTFTIAMLYVRLVLGHGGEHAFSRPLNPPDILVVTFTDAATRELRDRI 78

Query: 83  LEIITAWSHL-----------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
              +   +              D+ +   + +++   P++     AR L +   E     
Sbjct: 79  RARLAQAAAYFQPNDKGGTAGEDDEVDPLLRELRADYPSEQWPDCARKLQLAA-EWMDEA 137

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN------ 185
            V TIH++C  ++ +   ++   S F    E    +L+ E  +    +     +      
Sbjct: 138 AVSTIHSWCNRMLGEHAFDSG--SLFNQTLETDQSELLLEVVRDYWRTFFFPLDARDVLE 195

Query: 186 --------EELKKAFYEILEISNDEDIETLISDIIS 213
                   E+  ++   +L+ +++  I+ L + I S
Sbjct: 196 LRDSWAAPEDFYRSVTPLLDYADEIGIDDLPAQIFS 231


>gi|159040530|ref|YP_001539783.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157919365|gb|ABW00793.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 1062

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 67/207 (32%), Gaps = 39/207 (18%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +++ AS P     + A  G+GKT  L  R+  L    N  P   L +T T+ AA E+ HR
Sbjct: 517 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPEHCLAITFTRRAAEELRHR 576

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  ++   +                                        + V T H+   
Sbjct: 577 LDGLLGPVAE--------------------------------------DVTVGTFHSVGL 598

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++    A +   F IAD+        EA     A + L   ++L      +      
Sbjct: 599 QILRENREAAGLPVDFRIADDADRTAARAEAGDDHDAYLALLRKQDLVDLDELLTLPLAL 658

Query: 202 EDIETLISDIISNRTALKLIFFFFSYL 228
              +  ++D   +R     +  +    
Sbjct: 659 LRADQRLADSYRDRWRWIFVDEYQDVD 685


>gi|311107647|ref|YP_003980500.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8]
 gi|310762336|gb|ADP17785.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8]
          Length = 707

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 37/180 (20%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++    +E  D ++     Q  A++              V A AGSGKT+ L  RV  L+
Sbjct: 12  DTSSPSAERPDPLADLNPAQREAAEFGVAGAPGDDGPLLVIAGAGSGKTNTLAHRVAHLI 71

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           L  A P  +L LT ++ AA EM  RV  ++                              
Sbjct: 72  LNGADPQRMLLLTFSRRAALEMERRVGSVLQRVMR------------------------- 106

Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               L    + P      T HA    +++       ++  F I D   ++ L+   +   
Sbjct: 107 ----LRATQQAPSLPWAGTFHAIGARLLRDCAQRIGLSEAFTIHDRGDAEDLMGMVRHEL 162


>gi|197334387|ref|YP_002155339.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11]
 gi|197315877|gb|ACH65324.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11]
          Length = 1208

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 22/192 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIASLYLRLLLGHGDEGTRHQEELTVDRILVVTFTEAATAELRERIRA 81

Query: 85  IITAWSHLSDEILSAEITK-----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            I          +     K     I     +  D   A  +L+    +     + TIH F
Sbjct: 82  KIHDARLAFARAVHNNDYKSSDPVIDPLLASIGDHKSATQILLNAERSMDEASIFTIHGF 141

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C+ ++ Q   E+   + F         KL+ +              + + ++ Y+     
Sbjct: 142 CQRMLTQNAFESG--AQFESEFVTDQAKLMHQVAADFWRRSFYHLPKMVAESVYDCWSSP 199

Query: 200 NDEDIETLISDI 211
           +      L+ D+
Sbjct: 200 S-----ALLGDM 206


>gi|189183408|ref|YP_001937193.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda]
 gi|189180179|dbj|BAG39959.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda]
          Length = 716

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 40/156 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L+     ++           V A AG+GKT ++  R+  ++    A P  +L +T T  A
Sbjct: 5   LLDLNPEQREAVITTNGPLLVLAGAGTGKTRVITYRIAYIIDQFMALPEEILAVTFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ E                                       I     G+ + 
Sbjct: 65  ATEMQSRIAE---------------------------------------ITNNTTGIYIG 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T HA    I++       +TS F+I D+ +  ++I+
Sbjct: 86  TFHAIATKILKAHAELVGLTSSFSIIDQSEQVRVIK 121


>gi|164658916|ref|XP_001730583.1| hypothetical protein MGL_2379 [Malassezia globosa CBS 7966]
 gi|159104479|gb|EDP43369.1| hypothetical protein MGL_2379 [Malassezia globosa CBS 7966]
          Length = 876

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 44/176 (25%)

Query: 16  LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL-----LANAHPSTLLCL 68
           ++S     Q  A  SD +R   + A  GSGKT +L  RV  L+          PS  + +
Sbjct: 2   MLSGLSDAQRTAVTSDASRPLQILAGPGSGKTRVLTTRVAWLVQGAPDRKPIPPSQCVVV 61

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AAAEM  R+  +I                             + R L++      
Sbjct: 62  TFTNKAAAEMRSRLQALIGE--------------------------ERTRMLIL------ 89

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                 T HA C   ++++     ++  F IAD + +K++I++      A +  D+
Sbjct: 90  -----GTFHATCARFLRRWGERIGLSRQFTIADADDAKRIIKDICADFDADMASDD 140


>gi|148243810|ref|YP_001220049.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|146400373|gb|ABQ28907.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5]
          Length = 717

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 39/171 (22%)

Query: 16  LISQTKSEQLLA----------SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            + +   EQ  A          +       V A AGSGKT  L  RV  L++    P  +
Sbjct: 25  YLDKLNVEQRSAVVHGIDSATTTHIGAPLLVIAGAGSGKTSTLAHRVAHLIVNGVDPRRI 84

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L ++ ++ AAAEM  R   I           ++  +T                       
Sbjct: 85  LLMSFSRRAAAEMIRRAERISVQAMGGKTGAMTDALT----------------------- 121

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                    T H     +++ +  +  +   F I D E S  L+   +   
Sbjct: 122 ------WAGTFHGIGARLLRDYAEQIGLDPAFTIHDREDSADLMNLVRHEL 166


>gi|319934767|ref|ZP_08009212.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1]
 gi|319810144|gb|EFW06506.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1]
          Length = 1203

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   + +         S  VSA AGSGKT ILV R++ LL         L LT T+AA  
Sbjct: 1   MPFNEGQLKAIQQRDASILVSAPAGSGKTKILVSRIVELLKEGYEIFDFLVLTFTQAAGN 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+ E +                          D++   HL   IL  P    +   
Sbjct: 61  EMKQRLSEELHQLVSTD------------------IDLTLKEHLEKQILNLPH-AYMTNF 101

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H FC  ++ ++    N+   F I        + +   +  L   +L+  E +K+      
Sbjct: 102 HGFCNLLLMKYGYLVNVMPGFEI--NSDPSMIKKAVLQECLEKWILE--EHIKEFLSLYF 157

Query: 197 EISNDEDIETLISDI 211
              + +   +L+  I
Sbjct: 158 PGYSLDAFSSLLLSI 172


>gi|300726045|ref|ZP_07059503.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14]
 gi|299776652|gb|EFI73204.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14]
          Length = 1115

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 4/156 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI 85
            + P       A+AGSGKT  L +  ++L++ +      +L +T T  A  EM  R+L  
Sbjct: 2   INHPKPLTVYKASAGSGKTFTLTKEYIKLVIKDPTCYRNILAVTFTNKATEEMKMRILST 61

Query: 86  I-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           +   W  L D +   +    +     +   ++A   L  ++      +V+TI  F ++++
Sbjct: 62  LYGIWKQLPDSVDYLKQITKEIDVSPELASAQAGKALSLLVHNYNYFRVETIDTFFQSVL 121

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           +    E ++T++  I  E    ++ + A    + ++
Sbjct: 122 RNLARELDLTANLRI--ELNDYQVEDMAVDELIENL 155


>gi|163750873|ref|ZP_02158107.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99]
 gi|161329431|gb|EDQ00426.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99]
          Length = 1249

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 29/235 (12%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT+ +    +RLLL +    P     +L +T T AA  E+  R+   
Sbjct: 31  GGSRLIEASAGTGKTYTIAGLYVRLLLGHGIVKPLTCQQILVVTFTNAATGELRDRIRNK 90

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+ H        E+         +S+   A   L   L++     + TIH FC+ I+
Sbjct: 91  IQLAYRHFIGIDTGDELLASLHSATPESERPLALKRLDLALKSLDEASIFTIHGFCQRIL 150

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKS-------TLASIMLD---NNEELKKAF 192
                E+++   S F + D E     + +  +         LA I+     + + L K  
Sbjct: 151 ADMAFESSLLFESEFTLDDSEFLHHAVRDFWREHCYPLPGCLAEIIQKKFADPDALSKQL 210

Query: 193 YEILEIS------NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
             +L  S        ED   L   +  + + LKLI     +   R+ IE  L S+
Sbjct: 211 KPLLGASQANAHPQPEDFNKLQGTLTQSMSRLKLI-----WPREREAIETLLHSL 260


>gi|325959374|ref|YP_004290840.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
 gi|325330806|gb|ADZ09868.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
          Length = 933

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 39/152 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           T +++  A        + A  G+GKT +LV+RV  L+      PS +L +T T  AA E+
Sbjct: 12  TSAQREAAKHFEGPLLIVAGPGAGKTRVLVERVAYLVKKKKVDPSNILVITFTVKAAEEL 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                                            +++ TIH+
Sbjct: 72  KARLSHCVGQEIV--------------------------------------SMQISTIHS 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           FC  I++ +     + + F + D E     + 
Sbjct: 94  FCHEILRDYSDYHELGATFDVLDSEMQLMFMR 125


>gi|296121490|ref|YP_003629268.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296013830|gb|ADG67069.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 680

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 51/162 (31%), Gaps = 37/162 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D+    + +Q           V A AG+GKT ++  R+  L+ A   P  +L +T T 
Sbjct: 1   MLDISHLNRPQQEAVRTHRGPLLVLAGAGTGKTRVITYRMADLIAAGVDPERILSVTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R   ++                                              
Sbjct: 61  KAAREMLDRTSLLLGRTMKKRP-------------------------------------T 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           + T H++C  I++Q          F I D    +    +A +
Sbjct: 84  ISTFHSWCVGILRQEIDSLGYPKQFVIYDRGDQESAARKALQ 125


>gi|148263393|ref|YP_001230099.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
 gi|146396893|gb|ABQ25526.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
          Length = 678

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 39/162 (24%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74
           +S    +QL A      +  V A AGSGKT ++  R+  LLL    P+  +L +T T  A
Sbjct: 4   LSTLNPQQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLLLNKKVPAMNILAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++   +                                       G+ + 
Sbjct: 64  AKEMRERVDSLVGRQACK-------------------------------------GIIIS 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I+++         +F+I        L+++  +  
Sbjct: 87  TFHSLGVRILRRNIELLGYKRNFSIYSTSDQIGLVKQIMREV 128


>gi|83319825|ref|YP_424677.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|90110084|sp|P45612|UVRD_MYCCT RecName: Full=Probable DNA helicase II homolog
 gi|83283711|gb|ABC01643.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 722

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 81/218 (37%), Gaps = 40/218 (18%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83
               +  +   + A AGSGKT ++  ++  L+   N  PS +L +T T  AA EM  RVL
Sbjct: 16  AAVLNIDKPVRIIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKEMKERVL 75

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +I                                         +     + T H++C  +
Sbjct: 76  QITN--------------------------------------NSFKSPFISTFHSWCSKV 97

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++       +   F I D +  K++I+ A K +   +  ++ +   K     ++   +E 
Sbjct: 98  LRIDGKHIGLEDKFLIIDSDDQKRIIKSALKESNIELSENDKKTFDKKILYKIKEWKEEL 157

Query: 204 IETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           ++     I++  + L+  F     L++  +++ +    
Sbjct: 158 VDP-SEAILNATSTLEKNFAVIYRLYQNTLLKNNSLDF 194


>gi|307320004|ref|ZP_07599426.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|306894381|gb|EFN25145.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
          Length = 689

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 38/169 (22%)

Query: 17  ISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           + +    Q  A +               + A AGSGKT+ L  RV  L++  A P  +L 
Sbjct: 7   LEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRILL 66

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T ++ AAAEMS RV  I       S  +++  ++                         
Sbjct: 67  MTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALS------------------------- 101

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                  T H     +++ +  +  + + F I D E S  LI   +   
Sbjct: 102 ----WAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIRHEL 146


>gi|225620718|ref|YP_002721976.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
 gi|225215538|gb|ACN84272.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
          Length = 659

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 48/211 (22%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D++      Q            + A AGSGKT ++ +++  L+      P  ++ +T T
Sbjct: 1   MDILENVSEVQREGILHTGSPLLLLAGAGSGKTLVITRKIAYLINELEVAPENIMAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                         P  L
Sbjct: 61  NKAAHEMKERVCSLLPDIK-------------------------------------PSRL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            ++T H+ C  I+++        S+F I DE     +I+   K     +     +++   
Sbjct: 84  FIRTFHSACLRILKENAHFLGYKSNFLILDEGDKASVIKRIMKE--EEVPKSIGQKIITR 141

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIF 222
           F   ++   D+        I+ +R   + ++
Sbjct: 142 FISNVKNGMDDG-------IVFDRDIFENVY 165


>gi|113869553|ref|YP_728042.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113528329|emb|CAJ94674.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16]
          Length = 726

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 32/167 (19%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64
           +          ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  
Sbjct: 22  ASNRIPRMTHGLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEDKGFEPRH 79

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +  +T T  AA EM  R+ +++   +    + +  +                        
Sbjct: 80  IAAVTFTNKAAKEMQERIGKLMEGKTTREGKRIPLK------------------------ 115

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
                 L V T H+    I++       +   F+I D +    LI+E
Sbjct: 116 -----QLTVCTFHSLGVQILRMEAEHVGLKPQFSIMDSDDCFGLIQE 157


>gi|269115227|ref|YP_003302990.1| ATP-dependent helicase [Mycoplasma hominis]
 gi|268322852|emb|CAX37587.1| ATP-dependent helicase [Mycoplasma hominis ATCC 23114]
          Length = 745

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 40/167 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            IDL    + ++           + A AGSGKT +L  ++  L+      P+ +L LT +
Sbjct: 1   MIDLKDLNEQQKSAVIYNEGPLRIIAGAGSGKTRVLTYKIAYLIQKLGVLPNRILALTFS 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                       + P  L
Sbjct: 61  NKAANEMKQRVFNLLAE-------------------------------------DNPSNL 83

Query: 132 K--VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T HA C  I+++        + F I DE   K++++      
Sbjct: 84  SPYISTFHAMCAKILRKEIYNFGYENDFQILDELDQKEILKIVYSEL 130


>gi|307300863|ref|ZP_07580638.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
 gi|306904397|gb|EFN34982.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
          Length = 689

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 38/169 (22%)

Query: 17  ISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           + +    Q  A +               + A AGSGKT+ L  RV  L++  A P  +L 
Sbjct: 7   LEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRILL 66

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T ++ AAAEMS RV  I       S  +++  ++                         
Sbjct: 67  MTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALS------------------------- 101

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                  T H     +++ +  +  + + F I D E S  LI   +   
Sbjct: 102 ----WAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIRHEL 146


>gi|78188740|ref|YP_379078.1| exodeoxyribonuclease V, beta subunit [Chlorobium chlorochromatii
           CaD3]
 gi|78170939|gb|ABB28035.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium
           chlorochromatii CaD3]
          Length = 1207

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 15/185 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS----HRVLEIITAW 89
            + A+AG+GKT+ +    +RLLL     P  +L +T+T+AA  E+      R+ E++  +
Sbjct: 18  LIEASAGTGKTYAIASLYVRLLLEKQLLPEQILVVTYTEAATQELRGRIRSRIREVLEVF 77

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              +      +    Q  +     + +AR  L+  L       + TIH FC  ++Q+   
Sbjct: 78  EGAATSDAIVQRLYDQALEQGDDMVERARMALVQALALFDTAAIFTIHGFCLRVLQEHAF 137

Query: 150 EANITSHFAIADE---EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E+      ++ D       + L+ E  +    +        L    Y +    + E    
Sbjct: 138 ESG-----SLYDTTLVTDQRALLLEIVEDFWRTHFFGEASPLLA--YTLQCGGSPESFLA 190

Query: 207 LISDI 211
           L+  +
Sbjct: 191 LLQKL 195


>gi|307298415|ref|ZP_07578218.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915580|gb|EFN45964.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 969

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 36/213 (16%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRL------LLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +  +V+A+AG+GKT  LV+  + +      +        ++ +T T  AA EM  RV+ 
Sbjct: 2   NKDIFVTASAGTGKTFSLVKEYVGVFDRSFRIGERLDVHNVVAITFTNKAAREMKDRVIT 61

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I                +I    P              +        + TIH+FCE I+
Sbjct: 62  EID--------------HRIASGHPGS---------WKPLRNKMSYAWISTIHSFCERIL 98

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           ++  L A I   F I    +   L E+  ++       ++N E  +   ++  +  D+  
Sbjct: 99  RESALFAGIDPGFQILSGMRRATLEEKVVRT-----YFEDNLESLEPLIQLTGL--DKAF 151

Query: 205 ETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
             +   I S R +L L       L    II   
Sbjct: 152 RIVKEAISSKRHSLALNPSPVGSLLGDSIISDD 184


>gi|327399219|ref|YP_004340088.1| UvrD/REP helicase [Hippea maritima DSM 10411]
 gi|327181848|gb|AEA34029.1| UvrD/REP helicase [Hippea maritima DSM 10411]
          Length = 667

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 51/186 (27%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+ +  ID ++  + + +L  + + +  + A AGSGKT  L  ++  +L    A P  +L
Sbjct: 2   QQKNYIIDELNPQQRQAVL--ENSCNLLILAGAGSGKTKTLTHKIAFILNEGLAKPYQIL 59

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T  AA EM  R+ ++I +                                      
Sbjct: 60  ALTFTNKAAGEMKERIGKLIGS-------------------------------------- 81

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
               + + T H+    I+++            I D +  + LI+E     L  + +D+ +
Sbjct: 82  QASDMWIGTFHSIALKILRKEGFR------PTIYDSKDQENLIKE----ILKKLNIDSKK 131

Query: 187 ELKKAF 192
              +AF
Sbjct: 132 YTPRAF 137


>gi|16263702|ref|NP_436495.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021]
 gi|14524418|gb|AAK65907.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021]
          Length = 689

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 38/169 (22%)

Query: 17  ISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           + +    Q  A +               + A AGSGKT+ L  RV  L++  A P  +L 
Sbjct: 7   LEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRILL 66

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T ++ AAAEMS RV  I       S  +++  ++                         
Sbjct: 67  MTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALS------------------------- 101

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                  T H     +++ +  +  + + F I D E S  LI   +   
Sbjct: 102 ----WAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIRHEL 146


>gi|320535504|ref|ZP_08035607.1| UvrD/REP helicase [Treponema phagedenis F0421]
 gi|320147643|gb|EFW39156.1| UvrD/REP helicase [Treponema phagedenis F0421]
          Length = 1138

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 47/197 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKA 73
           D I      Q  A+    +A +SA AGSGKT +L  R + L++    P   ++ LT TK 
Sbjct: 3   DFIESLNQNQKAAALIDVNAVISAGAGSGKTRVLTARYIHLVINKKIPIEKIVALTFTKK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  R+   +        +                             + +    ++
Sbjct: 63  AAAEMYQRIYRELLTCDSPEAK---------------------------QAINSFHLARI 95

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI +F  A+ +       I+  F+I  ++ +  L+ E                 + A  
Sbjct: 96  MTIDSFSLAVARTGCKNFGISPDFSI--DKNAGDLLAE-----------------QIALD 136

Query: 194 EILEISNDEDIETLISD 210
             L+  N++ ++T + +
Sbjct: 137 FFLKHRNNKSLQTFMGE 153


>gi|309389723|gb|ADO77603.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 1051

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 13/193 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L    L  LL     S ++ +T TK A AE+ +R+L+ + A    S 
Sbjct: 4   VIKASAGTGKTYRLSLEYLAALLKGIDFSEIIVMTFTKKATAEIKNRILKHLRALILGSP 63

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E         + +   K ++ +   +   ++     +K+ TI AF   I  +      I 
Sbjct: 64  EKEDIIAALAEIQPELKVEVEQLEKIYKKMILNDEDIKIYTIDAFINQIFSR-----GIA 118

Query: 155 S-----HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
                 ++ I D++Q++K+IEE  K  L         +  ++F E     N +     I 
Sbjct: 119 PFLEIYNYQIIDQKQNEKIIEELLKKILNK---QKYYQKLESFLEANTARNLDPYLEFIQ 175

Query: 210 DIISNRTALKLIF 222
           +I++N     L+ 
Sbjct: 176 EIVNNAWKFMLLE 188


>gi|301062532|ref|ZP_07203175.1| conserved hypothetical protein TIGR00375 [delta proteobacterium
           NaphS2]
 gi|300443389|gb|EFK07511.1| conserved hypothetical protein TIGR00375 [delta proteobacterium
           NaphS2]
          Length = 1107

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 48/207 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + ++           + A  G+GKT  L  R+  LL A       +L LT T
Sbjct: 486 ILDPLN--REQRRAVIHGHGHLLIVAGPGTGKTMTLTHRIAYLLNAGPTGGGNILALTFT 543

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +    S                          A+ +           
Sbjct: 544 NKAAREMKERLFRLEGHES--------------------------AKTVF---------- 567

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H FC  +++      ++   F++  E  +  L   A+ + L +    N +   + 
Sbjct: 568 -VSTFHGFCLNVLRSDGHFLDLPDPFSLCSETDTYIL---AEGAVLEAANDKNRKNATRR 623

Query: 192 FYEI-----LEISNDEDIETLISDIIS 213
           F +      L   ++++ ++ + D+ S
Sbjct: 624 FLKNLPQFKLNSISNKESDSALDDLFS 650


>gi|85374356|ref|YP_458418.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84787439|gb|ABC63621.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 776

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 42/183 (22%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           ++           + A AG+GKT  L  R+  L+    A PS +LC+T T  AA EM  R
Sbjct: 35  QREAVLTSEGPVLMLAGAGTGKTAALTARLAHLIATRKAWPSEILCVTFTNKAAREMRSR 94

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + I                                          G   + T H+ C 
Sbjct: 95  VGQHIGDAVE-------------------------------------GMPWLGTFHSICA 117

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++      + S++ I D +   +L+++     +    LD      +    +++   +
Sbjct: 118 RMLRRHAELVKLQSNYTIIDTDDQLRLLKQ----LIQQNDLDEKRWPARQLAGLIDRWKN 173

Query: 202 EDI 204
             +
Sbjct: 174 RGL 176


>gi|298505014|gb|ADI83737.1| ATP-dependent helicase, UvrD superfamily [Geobacter sulfurreducens
           KN400]
          Length = 680

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 38/175 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            +DL +    ++   +       V A AGSGKT ++  R+  L+L     P ++L +T T
Sbjct: 1   MLDLSTLNPPQREAVNCTEGPLLVLAGAGSGKTRVITCRIGHLVLHRKVAPESILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV E++                                           G+
Sbjct: 61  NKAAGEMKERVRELVGQGRTK-------------------------------------GM 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            V T H+    I+++         +F I        L+ +A +     +   + E
Sbjct: 84  IVSTFHSLGVRILRRDIERLGYKRNFGIYTTSDQLGLVRQALREVSDDVRKADAE 138


>gi|258545084|ref|ZP_05705318.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826]
 gi|258519661|gb|EEV88520.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826]
          Length = 1287

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 36/211 (17%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           A + A+AG+GKT  L   +LRLL+     P  ++  T T+ AAAEM  RV + + A    
Sbjct: 19  ALIEASAGTGKTWTLTGIILRLLIEGGYPPREIIATTFTRKAAAEMQQRVHKRLHALREN 78

Query: 93  SDEILSAEITKIQGKKPNKSDMSK-------------ARHLLITIL-------------- 125
              I +  + +      +    ++              RHL++  +              
Sbjct: 79  LKAIAARYLAEETVLNDDDGLATRLDDIIGGSGGDLINRHLILNAVAKHGLDGLIAIFSR 138

Query: 126 -----ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                     L + TI + C+  + +F LE        I +   +   +EE    TL  +
Sbjct: 139 VESLQARLDELFIGTIDSLCQRWLAEFALETGNDERLQINENSPA---LEETIHDTLRRL 195

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDI 211
           + +N++   + F ++L      D +  ++  
Sbjct: 196 LHENHQHDPETFAQMLADGAYHDSDAYLAAA 226


>gi|253584027|ref|ZP_04861225.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725]
 gi|251834599|gb|EES63162.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725]
          Length = 1036

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 92/192 (47%), Gaps = 11/192 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AG+GKT+ L    +  L        +L +T TK A AE+  R+L+ +   +  +
Sbjct: 18  LVLKASAGTGKTYRLSLEYVGALCRGTDFKDILVMTFTKKATAEIKERILKFLKELAENA 77

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEAN 152
            +  S +    +     + +  K   +   +++    LKV TI AF   I ++       
Sbjct: 78  KDGESIKENLKKIYPDMEFNQQKISAVYQDLIQNRDKLKVYTIDAFTNLIFKKAIAPYLK 137

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLIS 209
           I   + I D+++++K++ +  +         +N+E  +AF   LE ++++D+E   TLI 
Sbjct: 138 I-YSYEIIDDDENRKILIKTFQKIF------DNKEDFRAFKGFLEDNSEKDMENYLTLIK 190

Query: 210 DIISNRTALKLI 221
           +I++ R  + ++
Sbjct: 191 NILNERWKVIVL 202


>gi|332179303|gb|AEE14992.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796]
          Length = 610

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 56/211 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++  + ++      +R+  + A AG+GKT +L  R  RL+  N   +  L LT TK AA 
Sbjct: 3   LNLNEDQKRAVYSDSRALLIVAGAGTGKTRVLTTRAARLIKENPD-ARYLLLTFTKKAAR 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM+ RV E+I                                       +T   L   T 
Sbjct: 62  EMTTRVRELIEE-------------------------------------DTKNRLYSGTF 84

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------------LA 178
           H+FC  I+++      +T+ F I DE  S  L+++                       L 
Sbjct: 85  HSFCSNIIRRRSERVGLTNDFVIIDESDSLDLMKKVFSRIYSKEKIDSLIFKPKDILSLY 144

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLIS 209
           S   +NN++  +      +  N EDI+ +IS
Sbjct: 145 SYARNNNQDFIEIVQRKYKYVNFEDIKKIIS 175


>gi|123968742|ref|YP_001009600.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. AS9601]
 gi|123198852|gb|ABM70493.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           AS9601]
          Length = 1208

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 10/197 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L          
Sbjct: 14  LVEASAGTGKSFTLAHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKILSRFLNLKLYL 73

Query: 94  DEILSAEI-TKIQGKKPNKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQFP 148
                 +I   ++    N  D  K++  +I+     +     LKV T HAFC  I+ ++ 
Sbjct: 74  QSYKECKIDNTLKDWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDEYS 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY--EILEISNDEDIET 206
           +E  +T    I +   +  L ++   +      L+ N EL  A Y  +I         ++
Sbjct: 134 IEIGLTQDPYIENNIDN--LYKDVIDNLWIDDFLNLNHELISAVYKKKISSRFGSRINKS 191

Query: 207 LISDIISNRTALKLIFF 223
              +I+ N     +  F
Sbjct: 192 FFVEILKNIDQENIYKF 208


>gi|167523216|ref|XP_001745945.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775746|gb|EDQ89369.1| predicted protein [Monosiga brevicollis MX1]
          Length = 654

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 26/173 (15%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L+    +EQ LA      +  V A  GSGKT ++ +R   L+     PS ++ +T T+ A
Sbjct: 17  LLKGLNAEQRLAVTAGEGATVVVAGPGSGKTRVITRRAAWLIEHGVAPSEVVLMTFTRKA 76

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++      S    + +                            G +   
Sbjct: 77  AREMRERLDQLLAQSGAASGAAAAGQ-------------------------HRAGQIMAG 111

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           T H+     ++++    N++ +F   D E   +++ +  K    +       E
Sbjct: 112 TFHSLALRFLRRYSHLLNLSQNFTQIDTESRNRILRDFIKECKKAAPEGEESE 164


>gi|94500333|ref|ZP_01306866.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65]
 gi|94427632|gb|EAT12609.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65]
          Length = 1184

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 27/220 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN----AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            + A+AG+GKT  +    LRL+L +      P  +L +T TKAA  E+  R+   +    
Sbjct: 18  LIEASAGTGKTFTIAALYLRLVLGHGCNPISPENILVVTFTKAATEELRGRIRNRLRQAY 77

Query: 91  HL---SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           +     DE L   +  +  +  + S + +    L   ++      + TIH F + ++ Q+
Sbjct: 78  NAIQTQDESLDPFVFSLLKELDHTSALER----LKDAVQIMDIAAIYTIHGFAQKVLSQY 133

Query: 148 PLEANITSHFAIADEEQSKKL-------------IEEAKKSTLASIMLDNNEELKKAFYE 194
            +E+++   F +  ++Q  ++             + EA+   +      +   L +    
Sbjct: 134 SVESHVDDEFELILDQQEIEMTAVNDVWRKFVYPLSEAELDIVLDAW-GSPSVLLRDVST 192

Query: 195 ILEISNDEDIETL--ISDIISNRTALKLIFFFFSYLWRRK 232
           ++    +     +  + DI       K  F  F   W+ +
Sbjct: 193 LVRRDVEFKDSNIKNLQDIDVAHKRFKDAFDKFCQDWQDQ 232


>gi|302338886|ref|YP_003804092.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301636071|gb|ADK81498.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 670

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 39/163 (23%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            IDL  +   EQ + AS       + A AGSGKT ++  R+  +L      S++L LT T
Sbjct: 2   AIDLAKELNKEQFIAASTIDGPLLIIAGAGSGKTRMITFRIAHMLEEGIPQSSILALTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EMS R+  +                                             L
Sbjct: 62  NKAAREMSDRIRSLTGK--------------------------------------RLSNL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            V T HAF   ++++     +  S+F+I D+     LI+E+ +
Sbjct: 84  TVSTFHAFGVKVLRKSIEYLDYKSNFSIYDQVDKTALIKESAR 126


>gi|304384333|ref|ZP_07366744.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973]
 gi|304334649|gb|EFM00931.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973]
          Length = 789

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 37/161 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L +   S++         + V A AGSGKT +L  ++  LL     P  +L LT T  AA
Sbjct: 6   LETLNDSQRRAVEHIDGPSIVIAGAGSGKTRVLTYKIAHLLNNGFEPWHILALTFTNKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+  +++                          M +AR+L            + T
Sbjct: 66  TEMKTRIGHLVS--------------------------MERARYL-----------NMGT 88

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+    I++           + I DE  S+ L +   K  
Sbjct: 89  FHSVFSHILRTEAERIGFGKQYTIYDENDSRSLCKVIIKEM 129


>gi|167856609|ref|ZP_02479309.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755]
 gi|167852265|gb|EDS23579.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755]
          Length = 1195

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 14/184 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
            +S+ + A+AG+GKT+ +    LRL+L    P       +L +T TKAA  E+  R+ E 
Sbjct: 12  NQSSLIEASAGTGKTYTMANLYLRLILGVRCPSPLTVEQILVVTFTKAATQELRDRIREK 71

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-------GGLKVQTIHA 138
           +        +  S E  +   +        + +  L   L              + TI +
Sbjct: 72  LVNVGKWFRDPSSKEAQEALQEPFLAELYQEVQPRLNECLLRLKIAEREIDLASIFTIDS 131

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC+ ++ QF   + I   F I       +L+    + T   +          A  E L+ 
Sbjct: 132 FCQKMLFQFAFSSGI--RFDIDLLTNESELLNRLSEETWRELFYPMGLAETVAVAEELKT 189

Query: 199 SNDE 202
            +D 
Sbjct: 190 PSDA 193


>gi|300088001|ref|YP_003758523.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527734|gb|ADJ26202.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 747

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L     +++           + A  GSGKT ++  R+  L+      P  ++ +T T  A
Sbjct: 4   LADLNTAQRQAVEAIEGPVLIVAGPGSGKTRVITYRIAYLIKEVGIAPHRIMAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ ++                                             + + 
Sbjct: 64  AREMKERLEKLAPGSVK--------------------------------------DITMG 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++      I   F I D +  +KL++ + +  
Sbjct: 86  TFHAICAGILRKEGQAIGIAREFVIFDADDQEKLLKRSAEEI 127


>gi|260429772|ref|ZP_05783748.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45]
 gi|260419255|gb|EEX12509.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45]
          Length = 680

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 35/168 (20%)

Query: 13  TIDLISQTKSEQLL----ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            +D ++  +   +     A        V A AGSGKT  L  RV  LL+  A P  +L +
Sbjct: 6   YLDTLNDNQRAAVEFGVGAEGLPPPLLVIAGAGSGKTMTLAHRVAHLLVNGADPQRILLM 65

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AA E++ RV  I                 K  GK      +S A           
Sbjct: 66  TFSRRAATELTRRVERI---------------TAKAMGKGVVAEALSWA----------- 99

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 T HA    I+++  L   +   F+I D E S  L+   +   
Sbjct: 100 -----GTFHAIGARILREHALSIGLHPDFSIHDREDSADLMNLCRNGL 142


>gi|317478934|ref|ZP_07938081.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
 gi|316904911|gb|EFV26718.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
          Length = 1099

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 15/159 (9%)

Query: 34  AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L V+ +  L++       +L +T T  A AEM  R+L  +      
Sbjct: 4   LVYKASAGSGKTFTLAVEYIKHLIINPRAYRQILAVTFTNKATAEMKERILTQLYGIWKG 63

Query: 93  SDEILSAEITKIQGKKP-----------NKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +     A + +I+  K            +     +A   L  +L      +V+TI +F +
Sbjct: 64  APSS-EAYLERIKNYKLKIKEEGGDGLTDGEIRQRAGMALQYMLHDYSRFRVETIDSFFQ 122

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           ++M+    E  ++ +  I  E  + +++ +A  S +  +
Sbjct: 123 SVMRNLARELELSPNLNI--ELNNSEVLSDAVDSLIEKL 159


>gi|255076889|ref|XP_002502109.1| ATP-dependent DNA helicase [Micromonas sp. RCC299]
 gi|226517374|gb|ACO63367.1| ATP-dependent DNA helicase [Micromonas sp. RCC299]
          Length = 907

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 71/230 (30%), Gaps = 46/230 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +      P     V A  GSGKT +LV RV  L+      PS +LC+T T  AA EM
Sbjct: 60  NDEQIAAIVAPVAPMKVLAGPGSGKTRVLVGRVTHLINELGVPPSHILCITFTNKAAREM 119

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++  +                                       E    +   T H+
Sbjct: 120 RERLVASVGE-------------------------------------ENARQITAGTFHS 142

Query: 139 FCEAIMQQFPLEA---NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
               ++++           + F I DE  +K +I +             +  L K+    
Sbjct: 143 VASRMLRKHVHLLDGYGRGNDFVIYDEADTKSIIRKIMVDVFMEDKKKADPALAKSRISA 202

Query: 196 LEISNDE----DIETLISDIISNRTALKLIFFFF-SYLWRRKIIEKSLWS 240
            + + D     D   +   +   R +LK   +    +       E +L S
Sbjct: 203 AKSAVDACVGMDGRRMARALCDTRPSLKRDPYIRDQFPRLYDEYEANLRS 252


>gi|160888166|ref|ZP_02069169.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492]
 gi|156862301|gb|EDO55732.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492]
          Length = 1099

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 15/159 (9%)

Query: 34  AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L V+ +  L++       +L +T T  A AEM  R+L  +      
Sbjct: 4   LVYKASAGSGKTFTLAVEYIKHLIINPRAYRQILAVTFTNKATAEMKERILTQLYGIWKG 63

Query: 93  SDEILSAEITKIQGKKP-----------NKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +     A + +I+  K            +     +A   L  +L      +V+TI +F +
Sbjct: 64  APSS-EAYLERIKNYKLKIKEEGGDGLTDGEIRQRAGMALQYMLHDYSRFRVETIDSFFQ 122

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           ++M+    E  ++ +  I  E  + +++ +A  S +  +
Sbjct: 123 SVMRNLARELELSPNLNI--ELNNSEVLSDAVDSLIEKL 159


>gi|149279369|ref|ZP_01885500.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39]
 gi|149229895|gb|EDM35283.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39]
          Length = 747

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 47/198 (23%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A AGSGKT ++  RV  L+        +L LT T  A+ +M  R++ +I   +    
Sbjct: 1   MIVAGAGSGKTRVITYRVAHLIEKGVDAFNILVLTFTNKASKDMRERIMNVIGPEAK--- 57

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + + T H+    I++    +    
Sbjct: 58  -----------------------------------NIWMGTFHSVFAKILRVEAEKIGYP 82

Query: 155 SHFAIADEEQSKKLIEEAKKST-LASIMLDNN------EELKKAFYEILEISNDEDIETL 207
           S+F I D + SK LI    +   L   + + N         K       E   + +I+  
Sbjct: 83  SNFTIYDSDDSKSLIRAILREMQLDDKLYNANFVHNRISSAKNNLVSHFEYMENPEIQA- 141

Query: 208 ISDIISNRTALKLIFFFF 225
             D+ + R  L +I+  +
Sbjct: 142 -EDVANKRPLLGVIYETY 158


>gi|158521072|ref|YP_001528942.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans
           Hxd3]
 gi|158509898|gb|ABW66865.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans
           Hxd3]
          Length = 1203

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-L 92
            V A+AG+GKT+ +V   LRL+   +A    +L +T+T+AA  E+  ++   +   +   
Sbjct: 21  LVEASAGTGKTYAIVGLFLRLIAETDAGVDNILAVTYTEAATQELKGKIRTALRKAATAF 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               +S +       K  ++  + A   L   LE      + TIH FC  ++ +F  E+ 
Sbjct: 81  KTGTMSGDPLIDGLLKKRETTRAVAARRLKRALEAFDQAAIFTIHGFCSRMLGEFAFESG 140

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           +     +   +   +L+++  +         
Sbjct: 141 VLFGAEMVTNQD--ELVQQVARDFWRQRFYG 169


>gi|318040198|ref|ZP_07972154.1| UvrD/REP helicase [Synechococcus sp. CB0101]
          Length = 1204

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 17/145 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            + A+AG+GKT  L   VLRLL     P     LL +T T AAAAE+  R+   +     
Sbjct: 19  LLEASAGTGKTFALAHLVLRLLSEGRAPLAVEQLLVVTFTDAAAAELRDRIARRLQDALQ 78

Query: 92  L---------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           L          D  L+A +  +    P            +  LE      + TIH FC  
Sbjct: 79  LLEPGSSATPGDAPLAAWLEALGPNPPALLRGRL-----LLALEQLDRADITTIHGFCRR 133

Query: 143 IMQQFPLEANITSHFAIADEEQSKK 167
            +Q+  LEA +    ++  E + ++
Sbjct: 134 TLQRQALEAGLGPAVSLESEGRERR 158


>gi|229592597|ref|YP_002874716.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens SBW25]
 gi|229364463|emb|CAY52290.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens SBW25]
          Length = 1224

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 16/167 (9%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74
            LA     S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA
Sbjct: 7   ALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILVVTFTDAA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILS---AEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             E+  R+   +   +    E +    A I  ++ + P +   + A  L I   +     
Sbjct: 67  TKELRERIRIRLAEAARFFREEIEQPDALIADLRAEYPPEQWPACANRLDIAA-QWMDEA 125

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            V TIH++C+ ++++   ++   S F    E     L+ E  +    
Sbjct: 126 AVSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWR 170


>gi|167035662|ref|YP_001670893.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida GB-1]
 gi|166862150|gb|ABZ00558.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida GB-1]
          Length = 1224

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 13/159 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFDRELLPPQILVVTFTDAATKELRERI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140
              +   +      L      +   + +  +    +    L   ++      V TIH +C
Sbjct: 75  RARLAEAARFFRGELEGADPLLHQLRDDYPQEAWPRCAGRLEIAVQWMDEAAVSTIHGWC 134

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           + ++++   ++   S F    E    +L+ +  +     
Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171


>gi|325274372|ref|ZP_08140466.1| exodeoxyribonuclease V, beta subunit [Pseudomonas sp. TJI-51]
 gi|324100494|gb|EGB98246.1| exodeoxyribonuclease V, beta subunit [Pseudomonas sp. TJI-51]
          Length = 1224

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 13/159 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFARELLPPQILVVTFTDAATKELRERI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140
              +   +      L      +   + +  +    +    L   ++      V TIH +C
Sbjct: 75  RARLAEAARFFRGELEGADPLLHQLRDDYPQEAWPRCAGRLEIAVQWMDEAAVSTIHGWC 134

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           + ++++   ++   S F    E    +L+ +  +     
Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171


>gi|308125359|ref|ZP_07663372.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308113235|gb|EFO50775.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 738

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 44/201 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++  A    +   + A  G+GKT  LV+RV  LL     P  +L LT +  AA EM+
Sbjct: 198 NEQQKHAADHRGKPYLLEAGPGTGKTQTLVKRVEGLLDEGVDPRRILILTFSNKAAGEMA 257

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+                                           E    + + T HAF
Sbjct: 258 ERLASKNK--------------------------------------EAVASMWIGTFHAF 279

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              ++++F  E        + +  ++     EA +     + L++   L      I  + 
Sbjct: 280 GLDLVRRFYSELGFEKEPRLLERTEAV----EALEDEFPRLGLEHFRNLYDPTEHITNLL 335

Query: 200 NDEDIETLISDIISNRTALKL 220
           +   I     +++ +R   +L
Sbjct: 336 S--AISRAKDEVVDHRDYFRL 354


>gi|124265321|ref|YP_001019325.1| putative ATP-dependent DNA helicase rep protein [Methylibium
           petroleiphilum PM1]
 gi|124258096|gb|ABM93090.1| putative ATP-dependent DNA helicase rep protein [Methylibium
           petroleiphilum PM1]
          Length = 693

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 37/148 (25%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
                      V A AGSGKT ++  ++ RLL A   PS +  +T T  AAAEM  R   
Sbjct: 2   QAVHHLAGPCLVLAGAGSGKTRVITHKIARLLEAGLAPSQIAAITFTNKAAAEMRER--- 58

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                              + G +P K                  GL + T H+    ++
Sbjct: 59  ----------------AKALVGARPAK------------------GLLISTFHSLGVRLL 84

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEA 172
           ++      +   F+I D +    ++ +A
Sbjct: 85  REDGAALGLKPQFSILDSDDVLGILRDA 112


>gi|157962241|ref|YP_001502275.1| exodeoxyribonuclease V subunit beta [Shewanella pealeana ATCC
           700345]
 gi|157847241|gb|ABV87740.1| exodeoxyribonuclease V, beta subunit [Shewanella pealeana ATCC
           700345]
          Length = 1238

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT  +    +RLLL +    P     +L +T T AA  E+  R+ + 
Sbjct: 38  GGSRLIEASAGTGKTFTIAGLYVRLLLGHGIEAPLTCEQILVVTFTNAATGELRDRIRKK 97

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       +  E+     +   ++ +  AR  L   L++     + TIH FC+ I+
Sbjct: 98  IQLAYRCFIGLEVDDELINSLYQATPEASLPIARKRLDLALKSLDEAAIFTIHGFCQRIL 157

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179
                E+++   S F + D E     +  A +     
Sbjct: 158 ADMAFESSLLFESEFTLDDSE----FLHHAVRDFWRE 190


>gi|255713190|ref|XP_002552877.1| KLTH0D03498p [Lachancea thermotolerans]
 gi|238934257|emb|CAR22439.1| KLTH0D03498p [Lachancea thermotolerans]
          Length = 1090

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 38/164 (23%)

Query: 16  LISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           L+S     Q   +  D T++  V A  G+GKT +L  RV  LLL    +P  ++  T TK
Sbjct: 4   LLSSLNERQCESVTFDHTKALQVVAGPGTGKTKVLTTRVAYLLLEKGINPGDIIITTFTK 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A  EM  R+  ++   +                                     P  L 
Sbjct: 64  KATLEMIERLSFLLEGTNI-----------------------------------NPSSLW 88

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I++Q   +  +   +    +  +  +I +  +  
Sbjct: 89  IGTFHSICARILRQHGWKIGLPKDWRTFSDSDTDPIIHKLVEKV 132


>gi|330879358|gb|EGH13507.1| UvrD/REP helicase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 564

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 38/149 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           S+Q+ AS       + A  G+GKT  LVQRV +L+L    PS +L LT +  AA+E+S R
Sbjct: 203 SQQVAASHRDSPFQLQAGPGTGKTRTLVQRVEKLILDGEDPSAILVLTFSNKAASELSER 262

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +              LS  +                             + + T HAF  
Sbjct: 263 I-------------ALSNPLAA-------------------------AAMWIGTFHAFGL 284

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIE 170
            I+++F     +     + D  +  +L+E
Sbjct: 285 DIIRRFHQILKLPPEPRLIDRLEGIELLE 313


>gi|262276563|ref|ZP_06054372.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886]
 gi|262220371|gb|EEY71687.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886]
          Length = 1187

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-----AHP-----STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +     AHP       +L +T T+AA  E+  R+  
Sbjct: 18  LIEASAGTGKTFTIAGLYLRLLLGHGNKDTAHPRPLSVDKILVVTFTEAATQELRDRIRS 77

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + L+     ++   I+    + +D  +A  LL+          + TIH FC+ ++
Sbjct: 78  RIHD-ARLAFSRGHSDDPVIKPLLDDIADHVQAERLLLQAERQMDEAAIYTIHGFCQRML 136

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F          L E A          
Sbjct: 137 TQNAFESG--SLFTNEFITDESALRERAVADYWRRQFY 172


>gi|289209414|ref|YP_003461480.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945045|gb|ADC72744.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 685

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 69/221 (31%), Gaps = 45/221 (20%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           S    +Q   +   R   V A AGSGKT ++ +++  L+         ++ +T T  AA 
Sbjct: 5   SLNPQQQAAVTTTDRPLLVLAGAGSGKTRVITEKIAYLIEQRGLEARRIVAITFTNKAAR 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV   ++                                      E   GL V T 
Sbjct: 65  EMRERVQGRLSK-------------------------------------EQARGLGVSTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H F    +++    + + + F+I D    + L+ E           D   E+      I 
Sbjct: 88  HTFGLNFLRRELAASGLRAGFSILDPGDCRSLLREITYR------DDTGSEVDALIGHIS 141

Query: 197 EISNDE-DIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              ND    E  + +    R A + I     Y      +  
Sbjct: 142 RWKNDLMTPEEALHEASQMRDAPEAIAAANLYPRYEDALRA 182


>gi|152991783|ref|YP_001357504.1| putative recombination protein RecB [Sulfurovum sp. NBC37-1]
 gi|151423644|dbj|BAF71147.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
           NBC37-1]
          Length = 911

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           SA+AGSGKT  L  R + LL       ++L  T T  AAAEM  RV++ +    HL +  
Sbjct: 10  SASAGSGKTFALSVRYISLLFMGEPAGSILAATFTNKAAAEMRQRVVDSLR---HLGENK 66

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              +  +++          K   +L   L +     + T+ +F   I++   LE  +   
Sbjct: 67  AFLDAIEVETGMSRDVLFRKQPEVLKRFLSSTS--HIVTLDSFFSKILRSASLELGLEPD 124

Query: 157 FAIAD---EEQSKKLIEEA----KKSTLASIMLDNNEELKKAFYEILE 197
           F   +   EE  K  ++E       S L  + +D  ++  K  +++++
Sbjct: 125 FVTKEQPKEELEKHFLDEVDANGMLSDLVKLAMDIEDKRFKKIFDLMQ 172


>gi|320108652|ref|YP_004184242.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319927173|gb|ADV84248.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 927

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 45/171 (26%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
             +D ++  + E +L  D      + A AGSGKT ++  R+  L+        ++L +T 
Sbjct: 3   HLLDQMNPQQREGVLQVD--GPVLLLAGAGSGKTRVITHRIAYLIQERGVAADSILAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV ++I   S                                        
Sbjct: 61  TNKAAKEMGERVDKLIGHTSLAKPL----------------------------------- 85

Query: 131 LKVQTIHAFCEAIMQQFPLE-----ANITSHFAIADEEQSKKLIEEAKKST 176
             + T H+ C  I+++           +T  FAI DE   + ++++A K  
Sbjct: 86  --IATFHSLCVRILRRDIEAMRVNGIGLTKSFAIYDENDQQAVVKQALKRL 134


>gi|308271533|emb|CBX28141.1| hypothetical protein N47_G34650 [uncultured Desulfobacterium sp.]
          Length = 1228

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 18/195 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A AG+GKT+ +    LRL++ N      +L +T TKAA  ++  R+   +       
Sbjct: 17  LIEAGAGTGKTYTIESLFLRLIIENKLTIDQILVVTFTKAATEKLKERIRSKLAKAKEAF 76

Query: 94  DEILSAEI-------------TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            E L  +                I        + + A  L+   L       + TIH FC
Sbjct: 77  SEGLKDKRPDDTLSEDALPKDALIDALCEKYENHTLAYDLINNALINFNEAAIFTIHGFC 136

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             I+  +  E    + F          L++E  +            E     Y + +IS 
Sbjct: 137 ARILSDYSFETG--NLFDTELVTDQTDLVQEIAEDFWRINFYRAEPEFIN--YCLTKISG 192

Query: 201 DEDIETLISDIISNR 215
            +    L+S  +S+R
Sbjct: 193 PDYFSRLVSKQVSSR 207


>gi|28197981|ref|NP_778295.1| DNA-dependent helicase II [Xylella fastidiosa Temecula1]
 gi|28056041|gb|AAO27944.1| DNA helicase II [Xylella fastidiosa Temecula1]
 gi|307579063|gb|ADN63032.1| DNA-dependent helicase II [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 728

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLT 69
           S  +  ++Q + E + A+       + A AGSGKT +L  R++ L  +      +++ +T
Sbjct: 4   SHVLYHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA E+  R+                                       + +     
Sbjct: 62  FTNKAAGEIQQRID--------------------------------------LQLRHGKR 83

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           G+ + T H+    +++    +A +  +F + D +   +L++   +S 
Sbjct: 84  GMWIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 130


>gi|326801224|ref|YP_004319043.1| UvrD/REP helicase [Sphingobacterium sp. 21]
 gi|326551988|gb|ADZ80373.1| UvrD/REP helicase [Sphingobacterium sp. 21]
          Length = 729

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I+   +   +QL A     +   V A AG+GKT ++  +V  L+     P+ +L LT T+
Sbjct: 94  INYKKELNPQQLAAVCTLDKPLLVIAGAGTGKTRVITYKVSYLIEKGFEPNEILLLTFTR 153

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +A EM +RV +++ A S          IT + G                          
Sbjct: 154 KSANEMLNRVQKLLHAKS----------ITNVLG-------------------------- 177

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             T H+F    ++++     +  +F I D E    +I   K   
Sbjct: 178 -GTFHSFANYALRKYHALVGLPPNFTIIDGEDVVDIISLLKTEL 220


>gi|300869706|ref|YP_003784577.1| exodeoxyribonuclease V beta chain [Brachyspira pilosicoli 95/1000]
 gi|300687405|gb|ADK30076.1| exodeoxyribonuclease V beta chain [Brachyspira pilosicoli 95/1000]
          Length = 308

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 32/229 (13%)

Query: 20  TKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
             S+Q    D   +    +VSA+AG+GKT  + +  L+LL       S ++ +T TKAAA
Sbjct: 3   LNSKQQEIIDLFLNEGICFVSASAGTGKTTTITEAYLKLLENKKQKVSNIVVITFTKAAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+                    KI+ K     D    + +   IL      K+ T
Sbjct: 63  NEMLIRIRR------------------KIREKINEGKDTDYWKDIYKEILTN---AKIST 101

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFY 193
           IH+F  +I++++ +  N+     I +E        E   + +  ++ DN   EE++K + 
Sbjct: 102 IHSFANSIVKEYSIYLNMPPKITILEENND---FYEVIHNKILELLNDNEFSEEIRKNYR 158

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              + S D+ I  + + +I  +  L+ I  F       KI+E  L+  A
Sbjct: 159 IFTDESKDKFINDIFNFLIKIKPRLENIKTFEEEA--NKILEIELYDNA 205


>gi|163857713|ref|YP_001632011.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804]
 gi|163261441|emb|CAP43743.1| ATP-dependent DNA helicase [Bordetella petrii]
          Length = 707

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 35/171 (20%)

Query: 11  SETIDLISQTKSEQLLASD-----PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPST 64
            +  D +S+    Q  A++     P      V A AGSGKT  L  RV  L+L  A P  
Sbjct: 20  PDPADYLSELNPAQRAAAEFGVGQPDAPALLVIAGAGSGKTSTLAHRVAHLILNGADPQR 79

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT ++ AA EM  RV  ++                                  L   
Sbjct: 80  MLLLTFSRRAAQEMERRVGMVLRRVMK-----------------------------LHAT 110

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            + P      T H     +++       ++  F I D   ++ L+   +  
Sbjct: 111 QQAPALPWAGTFHGIGARLLRDCATRIGLSESFTIHDRGDAEDLMGMVRHE 161


>gi|317063871|ref|ZP_07928356.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC
           49185]
 gi|313689547|gb|EFS26382.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC
           49185]
          Length = 1030

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AG+GKT+ L    +  L        +L +T TK A AE+  R+L+ +      +
Sbjct: 12  LVLKASAGTGKTYRLSLEYVGALCRGIDFKDILVMTFTKKATAEIKERILKFLKELEENT 71

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEAN 152
            +  S +    +     + +  K   +   +++    LKV TI AF   I ++       
Sbjct: 72  KDGESIKENLKKIYPDMEFNHEKISSIYRDLIQNRDKLKVYTIDAFTNLIFKKAIAPYLK 131

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLIS 209
           I   + I D+++++K++ +  +         +N++  +AF   LE ++++D+E   TLI 
Sbjct: 132 I-YSYEIIDDDENRKILIKTFQKIF------DNKDDFRAFKGFLEDNSEKDMENYLTLIK 184

Query: 210 DIISNRTALKLI 221
           ++++ R  + ++
Sbjct: 185 NLLNERWKVIVL 196


>gi|304382260|ref|ZP_07364767.1| ATP-dependent helicase [Prevotella marshii DSM 16973]
 gi|304336617|gb|EFM02846.1| ATP-dependent helicase [Prevotella marshii DSM 16973]
          Length = 1088

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 4/160 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEI 85
              P       A+AGSGKT  L    ++LL+ + +  +++L +T T  A  EM  R+L  
Sbjct: 13  VETPKSLTIYKASAGSGKTFTLAVEYMKLLIRDPYAYASILAVTFTNKATEEMKMRILGQ 72

Query: 86  I-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           +   W  L D     +      +        +A   L  +L      +V+TI  F ++++
Sbjct: 73  LYGIWKLLPDSQAYTDRICHTLELSPAVAAERAGIALRLLLHNYSYFRVETIDTFFQSVL 132

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +    E ++ ++  +  E   +++ ++A    +  +   N
Sbjct: 133 RNLARELDLNANLRV--ELNDRQVEQQAVDKLIEELDEHN 170


>gi|224371313|ref|YP_002605477.1| PcrA2 [Desulfobacterium autotrophicum HRM2]
 gi|223694030|gb|ACN17313.1| PcrA2 [Desulfobacterium autotrophicum HRM2]
          Length = 1157

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 48/185 (25%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLA-NAH 61
           H +    SE++D++     EQ LA         + A  G+GKT  L  R+  L+      
Sbjct: 482 HRASPVASESMDIVESLNPEQRLAVKGQGVPLLIEAGPGTGKTRTLTARIAWLIRDQGVA 541

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P T+L LT T  AA EM  R+  ++                                   
Sbjct: 542 PGTILALTFTNRAAGEMQERLNTLLPG--------------------------------- 568

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK---KSTLA 178
                  G +   T H FC  +++++           I D+   K+++ +A       L+
Sbjct: 569 -----QQGSVWAGTFHRFCLMVLKEYAGFKGF-----IVDDPARKEMLNQAVAHADVALS 618

Query: 179 SIMLD 183
           S +LD
Sbjct: 619 SALLD 623


>gi|190571383|ref|YP_001975741.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018782|ref|ZP_03334590.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357655|emb|CAQ55099.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995733|gb|EEB56373.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 637

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 52/223 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            ++ + L++    +QL  ++      + A AG+GKT  +  R+  ++    A+   +L +
Sbjct: 1   MNDYLSLLN--PEQQLAVTNINGPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RVLE+                                           
Sbjct: 59  TFTNKAANEMVSRVLELTGT---------------------------------------- 78

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T HA    I++       +  +F I   +       +  K+ +  I  D   E 
Sbjct: 79  NIPWLGTFHAIAAKILRMHAEIVGLNPNFTIIGVDDQL----QVIKNIINEINPDYLSEK 134

Query: 189 KKAFYEILEISNDE-DIETLISDIISNR----TALKLIFFFFS 226
            K    I++   ++  + + + D+ S R    TALK+ + +  
Sbjct: 135 YKTIMNIIQQWKEKCLLPSEVEDVQSFRPVYVTALKVYYQYQE 177


>gi|312963039|ref|ZP_07777525.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6]
 gi|311282808|gb|EFQ61403.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6]
          Length = 1224

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 16/167 (9%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74
            LA     S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA
Sbjct: 7   ALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGEVSGFGRELLPPQILVVTFTDAA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILS---AEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             E+  R+   +   +    + +    A I  ++ + P +   + A  L I   +     
Sbjct: 67  TKELRERIRIRLAEAARFFRDEIDQPDALIADLREEYPAEQWPACANRLDIAA-QWMDEA 125

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            V TIH++C+ ++++   ++   S F    E     L+ E  +    
Sbjct: 126 AVSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWR 170


>gi|26991357|ref|NP_746782.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida KT2440]
 gi|24986421|gb|AAN70246.1|AE016664_2 exodeoxyribonuclease V, beta subunit [Pseudomonas putida KT2440]
          Length = 1224

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 13/159 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATKELRERI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140
              +   +      L      +   + +  + +  +    L   ++      V TIH +C
Sbjct: 75  RARLAEAARFFRGELEGADPLLHQLRDDYPQENWPRCAGRLEIAVQWMDEAAVSTIHGWC 134

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           + ++++   ++   S F    E    +L+ +  +     
Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171


>gi|24373706|ref|NP_717749.1| exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1]
 gi|24348071|gb|AAN55193.1|AE015657_5 exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1]
          Length = 1259

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 20/228 (8%)

Query: 24  QLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKA 73
           Q L  DP       S  + A+AG+GKT+ +    LRLLL +    P     +L +T T A
Sbjct: 8   QALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLSCEQILVVTFTNA 67

Query: 74  AAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A  E+  R+   I  A+       ++    +    K  +S+ + A       L++     
Sbjct: 68  ATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPESERAIALRRFDLALKSLDEAA 127

Query: 133 VQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + TIH FC+ I+     E+++   S F + D E     +  A +           E L +
Sbjct: 128 IFTIHGFCQRILADLAFESSLLFESDFTLDDSE----FLHHAVRDFWREACYPLPEYLAQ 183

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
                 E  + + +   +  ++    A K +     +    + + +S+
Sbjct: 184 IIAS--EFGDPDGLVKQLRALLGASEA-KPLKPVQPFARLAESLSQSV 228


>gi|126090202|ref|YP_001041683.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155]
 gi|126174495|ref|YP_001050644.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS155]
 gi|125997700|gb|ABN61775.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS155]
 gi|125999858|gb|ABN63928.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155]
          Length = 1273

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 17/184 (9%)

Query: 10  HSETIDLISQTKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP 62
            SE I L +        A DP       S  + A+AG+GKT+ +    LRLLL +  A P
Sbjct: 1   MSEPIQLNAAALHSAAQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAP 60

Query: 63  ---STLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
                +L +T T AA  E+  R+   I  A+       ++    +       +S+ + A 
Sbjct: 61  LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL 120

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKST 176
                 L++     + TIH FC+ I+     E+++   S F + D E     +  A +  
Sbjct: 121 RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSE----FLHHAVRDF 176

Query: 177 LASI 180
               
Sbjct: 177 WREA 180


>gi|226326730|ref|ZP_03802248.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198]
 gi|225204951|gb|EEG87305.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198]
          Length = 519

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 38/158 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHR 81
           +Q      +    V A AGSGKT ++  ++  L+    +P   +  +T T  AA EM  R
Sbjct: 13  QQKAVEYVSGPCLVLAGAGSGKTRVITHKIAHLIRQCQYPAKQIAAVTFTNKAAREMKER 72

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                                       +   GL + T H    
Sbjct: 73  VAQTLGR-------------------------------------QEAKGLMISTFHTLGL 95

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            I+++      I + F++ D++    L++E     L  
Sbjct: 96  EIIKREYKALGIKAKFSLFDDQDQSALLKELTADLLEE 133


>gi|257469635|ref|ZP_05633727.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 1023

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A+AG+GKT+ L    +  L        +L +T TK A AE+  R+L+ +      +
Sbjct: 5   LVLKASAGTGKTYRLSLEYVGALCRGIDFKDILVMTFTKKATAEIKERILKFLKELEENT 64

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEAN 152
            +  S +    +     + +  K   +   +++    LKV TI AF   I ++       
Sbjct: 65  KDGESIKENLKKIYPDMEFNHEKISSIYRDLIQNRDKLKVYTIDAFTNLIFKKAIAPYLK 124

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLIS 209
           I   + I D+++++K++ +  +         +N++  +AF   LE ++++D+E   TLI 
Sbjct: 125 I-YSYEIIDDDENRKILIKTFQKIF------DNKDDFRAFKGFLEDNSEKDMENYLTLIK 177

Query: 210 DIISNRTALKLI 221
           ++++ R  + ++
Sbjct: 178 NLLNERWKVIVL 189


>gi|115378130|ref|ZP_01465306.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310821254|ref|YP_003953612.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364872|gb|EAU63931.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309394326|gb|ADO71785.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 692

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 60/163 (36%), Gaps = 37/163 (22%)

Query: 14  IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  +    EQL A +     A V A AG+GKT  L  RV RLL     P  +L LT T 
Sbjct: 19  IDYAALLNEEQLRAVEAGEGPALVIAGAGTGKTRTLTFRVARLLERGIPPEGVLLLTFTN 78

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM+ RV E+   +  +                         R +L           
Sbjct: 79  KAAREMTRRVEELAGGFVDV-------------------------RRILG---------- 103

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             T H    A+++QF       + F + D E ++ L+      
Sbjct: 104 -GTFHHAAHALLRQFAPTLGFATSFTVLDREDARDLMASCVSE 145


>gi|26554344|ref|NP_758278.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2]
 gi|26454354|dbj|BAC44682.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2]
          Length = 738

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 44/164 (26%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D  ++ + E + A D      V A AGSGKT +L  R + LL   N     +L  T T  
Sbjct: 7   DSFNEKQYEAITAPD-DVPLMVIAGAGSGKTAVLTYRAVYLLNELNYVSDRILGFTFTNK 65

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ ++I   S                                          +
Sbjct: 66  AANEMKDRITKVIPNRSFKY---------------------------------------I 86

Query: 134 QTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKLIEEAKK 174
            T H+ C  I+++   E N   I S+F I DE+    +++E  K
Sbjct: 87  GTFHSVCLRILREDIKELNIGKINSNFTIIDEDDQNSILKEIYK 130


>gi|149923566|ref|ZP_01911966.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149815585|gb|EDM75117.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 693

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 37/162 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +DL S   +++           V A AGSGKT ++  R+ RL+     P  ++ L+ T  
Sbjct: 1   MDLSSLNPAQREAVLHTEGPLLVLAGAGSGKTRVITHRIARLMELGTQPEEIVALSFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +++                            +KA+ L++           
Sbjct: 61  AAEEMRERLAKMVGR--------------------------AKAKALVL----------- 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+    +M++ P    +   F I D+     ++    + 
Sbjct: 84  GTFHSLGARMMREDPKGFEVPPRFQILDQGDVNGIVRALLRE 125


>gi|304408643|ref|ZP_07390264.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183]
 gi|307305472|ref|ZP_07585220.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175]
 gi|304352464|gb|EFM16861.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183]
 gi|306911775|gb|EFN42200.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175]
          Length = 1273

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT+ +    LRLLL +  A P     +L +T T AA  E+  R+   
Sbjct: 27  GGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRR 86

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       ++    +       +S+ + A       L++     + TIH FC+ I+
Sbjct: 87  IQVAFKCFLGLTIADPFVQALYDNTPESERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 146

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180
                E+++   S F + D E     +  A +      
Sbjct: 147 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 180


>gi|226226146|ref|YP_002760252.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
 gi|226089337|dbj|BAH37782.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
          Length = 702

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 38/159 (23%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +   ++   A+       + A AGSGKT  L+ RV  L+     P  +L LT T+ +A E
Sbjct: 26  ALNPAQAEAANHGDAPLLIVAGAGSGKTRTLIHRVAALIRRGIPPHRILLLTFTRRSAQE 85

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R   ++   S                                            T H
Sbjct: 86  MLSRCERLVGPASQSVQG--------------------------------------GTFH 107

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                ++++F   A + + F I D+  +  L+  A+ + 
Sbjct: 108 GVAHRLLRRFGPSAGLPADFTILDQSDAGDLMGLARSAL 146


>gi|219871763|ref|YP_002476138.1| exodeoxyribonuclease V subunit beta [Haemophilus parasuis SH0165]
 gi|219691967|gb|ACL33190.1| exodeoxyribonuclease V, beta subunit [Haemophilus parasuis SH0165]
          Length = 1195

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 14/184 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
            +S+ + A+AG+GKT+ +    LRL+L    P       +L +T TKAA  E+  R+ E 
Sbjct: 12  NQSSLIEASAGTGKTYTMANLYLRLILGVRCPSPLTVEQILVVTFTKAATQELRDRIREK 71

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-------GGLKVQTIHA 138
           +        +  S E  +   +        + +  L   L              + TI +
Sbjct: 72  LVNVGKWFRDPSSKEAQEALQEPFLAELYQEVQPRLNECLLRLKIAEREIDLASIFTIDS 131

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC+ ++ QF   + I   F I       +L+    + T   +          A  E L+ 
Sbjct: 132 FCQKMLFQFAFSSGI--RFDIDLLTNESELLNRFSEETWRELFYPMGLAETVAVAEELKT 189

Query: 199 SNDE 202
            +D 
Sbjct: 190 PSDA 193


>gi|317495616|ref|ZP_07953983.1| UvrD/REP helicase [Gemella moribillum M424]
 gi|316914235|gb|EFV35714.1| UvrD/REP helicase [Gemella moribillum M424]
          Length = 1214

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 79/220 (35%), Gaps = 37/220 (16%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
            T ++    +       V+A AGSGKT +L +R+ R + L       LL LT T AAA  
Sbjct: 18  PTSAQWQAIALTGADVLVAAAAGSGKTEVLSERIARKVALDRWDIDKLLVLTFTTAAAKN 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV   IT                   ++   S + K R  L         + V TI 
Sbjct: 78  MLVRVENKIT-------------------ERLLASGLEKDRLFLRKQSMLMNDVYVSTID 118

Query: 138 AFCEAIMQQFPLEAN---------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +FC  I+++F              ++ +F I     SK ++  +    L     +N    
Sbjct: 119 SFCLNILRKFYYLVEEEIAGSKKYLSPNFNILPN--SKNMLINSANEVLERFARENKIIT 176

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
            + F    +  N      +I  +I     L  I  F  YL
Sbjct: 177 DELFTIFGDKKN------IIDSLIDTYYKLLTIPNFEQYL 210


>gi|28493047|ref|NP_787208.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476087|gb|AAO44177.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
          Length = 743

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72
           DL+     +Q+        +  +SA AGSGKT +L  R+   L         +L +T T 
Sbjct: 6   DLLKGLNPQQVEGVCYRGPTLLISAGAGSGKTKVLTHRIAGFLATGEASCDQILAITFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA+EM HR  +++                                            ++
Sbjct: 66  KAASEMRHRTGDLVGLSVR--------------------------------------DMQ 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++         +F I D    + +I++  +ST
Sbjct: 88  ISTFHSVCVRILRECVGHLGKAKNFTIYDAADQRAIIKQICQST 131


>gi|302135046|ref|ZP_07261036.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 1230

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + +SA  E+     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEISAPDELISQLREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|254432659|ref|ZP_05046362.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001]
 gi|197627112|gb|EDY39671.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001]
          Length = 1248

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 10/171 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L   VLR +     P   LL +T T AAAAE+  R+ + +       
Sbjct: 18  LLEASAGTGKTFSLAHLVLRYVSEAEVPLRQLLVVTFTNAAAAELRDRIGQRLQTALGHL 77

Query: 94  DEILSAEITKIQGKKPNKSDMS-------KARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           D   +A  T        ++ +          R  L+  LE   G  + TIH FC   +Q+
Sbjct: 78  DRGEAAVETGNPVDPSLEAWLQWARPRAALLRAPLLLALEDLDGADITTIHGFCLRTLQR 137

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
             LEA       +  +  +  L+ +         +L     L      +++
Sbjct: 138 QALEAGQPPELQL--DSDAAPLVRQVCHDYWRQQVLALPPHLLDGVQRLVK 186


>gi|222054488|ref|YP_002536850.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32]
 gi|221563777|gb|ACM19749.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32]
          Length = 1083

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +    LRL+L    P   +L +T T+AA  E+  R+ + +T  +   
Sbjct: 16  LIEASAGTGKTFAIAALYLRLVLEQHLPVEQILVVTFTEAATKELRERIRKRLTEAAEAF 75

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            +  S + + +       +D S A   L   L +     + TIH FC+ ++Q+ P E+  
Sbjct: 76  GQGTSTD-SFLMCLIGRITDRSAAGQALTNALRSFDEAAIFTIHGFCQRMLQENPFESG- 133

Query: 154 TSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEELKK 190
               ++ D E     + ++ +       +   +    L +
Sbjct: 134 ----SLYDTELVTDERPVLRQIAADYWRTHCYNAPPALAR 169


>gi|303233117|ref|ZP_07319790.1| UvrD/REP helicase [Atopobium vaginae PB189-T1-4]
 gi|302480702|gb|EFL43789.1| UvrD/REP helicase [Atopobium vaginae PB189-T1-4]
          Length = 1349

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 41/199 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLC 67
           +    ++  +A   +   +V A AGSGKT  L QR++  L   +           S  L 
Sbjct: 36  MGLNDNQARIAEMLSSPVFVEAGAGSGKTFTLTQRIVWALTKGSLDANHAYISDLSQALI 95

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T AAA  +  +  E +      +  +   E                           
Sbjct: 96  ITFTHAAARSIKEKTREALRRAGMHAQALQVDE--------------------------- 128

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                + TIH  C  +++ + LE  I  +  IA    S+ L+ +A    + SIM  N+ E
Sbjct: 129 ---AWISTIHGMCFRLIKLYALELGIDPNSTIASSANSEYLLHQAFNDVMRSIMDSNHCE 185

Query: 188 LKKAFYEILEISNDEDIET 206
             +A  ++L +   +D  T
Sbjct: 186 --QAICDLLAMYPLKDKRT 202


>gi|42713|emb|CAA28481.1| rep helicase [Escherichia coli]
          Length = 637

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 43/200 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                                           GL + T H    
Sbjct: 67  VGQTLGHKEQR-------------------------------------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTALKL 220
            +      +  I  R  L L
Sbjct: 146 LKTPSQAAASAIGERDRLLL 165


>gi|320353670|ref|YP_004195009.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
 gi|320122172|gb|ADW17718.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
          Length = 731

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 38/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             ++   A+       V A AGSGKT  LV R+  L+     P ++L LT T+ AA EM 
Sbjct: 26  NPAQYAAATHGDGPILVIAGAGSGKTRTLVYRMAYLIEQGVEPESILLLTFTRRAAQEML 85

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           HR           + E+ +    +I G                            T HA 
Sbjct: 86  HR-----------AGELTAGSCRRIMG---------------------------GTFHAT 107

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              +++++     + S+F I D   ++ +I   K S 
Sbjct: 108 ANILLRRYGHHLGLGSNFTIIDRGDAEGIINLLKSSL 144


>gi|217973462|ref|YP_002358213.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS223]
 gi|217498597|gb|ACK46790.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS223]
          Length = 1273

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT+ +    LRLLL +  A P     +L +T T AA  E+  R+   
Sbjct: 27  GGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRR 86

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       ++    +       +S+ + A       L++     + TIH FC+ I+
Sbjct: 87  IQVAFKCFLGLTIADPFVQALYDNTPESERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 146

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180
                E+++   S F + D E     +  A +      
Sbjct: 147 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 180


>gi|261749558|ref|YP_003257244.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497651|gb|ACX84101.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 707

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D  S   S Q    +       V A AGSGKT ++  R++ ++      PS +L LT T
Sbjct: 1   MDYRSSLNSSQRKIIETIHGPVLVIAGAGSGKTRVITHRIVHMINNLGIDPSRILALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++                       N++D+                +
Sbjct: 61  NKAAKEMKMRISNML-----------------------NQTDL--------------NQI 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    ++++        S++ I D+  S+ +I++     
Sbjct: 84  SLGTFHSIFSWVLRKESHWLGYKSNYTIYDQRDSENVIKKILDDF 128


>gi|28572258|ref|NP_789038.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
 gi|28410389|emb|CAD66775.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
          Length = 743

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 15  DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72
           DL+     +Q+        +  +SA AGSGKT +L  R+   L         +L +T T 
Sbjct: 6   DLLKGLNPQQVEGVCYRGPTLLISAGAGSGKTKVLTHRIAGFLATGEASCDQILAITFTN 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA+EM HR  +++                                            ++
Sbjct: 66  KAASEMRHRTGDLVGLSVR--------------------------------------DMQ 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C  I+++         +F I D    + +I++  +ST
Sbjct: 88  ISTFHSVCVRILRECVGHLGKAKNFTIYDAADQRAIIKQICQST 131


>gi|213971096|ref|ZP_03399216.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           tomato T1]
 gi|301384181|ref|ZP_07232599.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060529|ref|ZP_07252070.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           tomato K40]
 gi|213924204|gb|EEB57779.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           tomato T1]
          Length = 1230

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + +SA  E+     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEISAPDELISQLREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|262340924|ref|YP_003283779.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272261|gb|ACY40169.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 709

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 44/199 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +S   S++ +         V A AGSGKT ++  R++ ++     +PS +L LT TK AA
Sbjct: 1   MSLNSSQRKIIETINGPILVLAGAGSGKTRVITYRIVHMIQNIGINPSNILALTFTKKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM HR+  +I                                       +    + + T
Sbjct: 61  KEMKHRISNMIDQ-------------------------------------KKLNQITLGT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE- 194
            H+    ++++        S++ I D+  S+ +I++  +     I L    E+++   E 
Sbjct: 84  FHSIFSILLRKESHLLGYKSNYTIYDQRDSENVIKKILEDINLDISLSTK-EIRRIISEY 142

Query: 195 ----ILEISNDEDIETLIS 209
                +   N++  E LI 
Sbjct: 143 KNNLYINKKNNKQSECLIK 161


>gi|94502048|ref|ZP_01308553.1| ATP-dependent DNA helicase Rep [Oceanobacter sp. RED65]
 gi|94425802|gb|EAT10805.1| ATP-dependent DNA helicase Rep [Oceanobacter sp. RED65]
          Length = 673

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 38/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++  ++  L+         ++ +T T  AA EM
Sbjct: 7   NPRQKESVLHIDGPLLVLAGAGSGKTSVITTKIAYLIEECGVPARNIMAVTFTNKAAKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++   +                                       GL V T H 
Sbjct: 67  KERVGKLVQGKAT-------------------------------------NGLTVSTFHN 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               I+++      +   F+I D+  +K L+++    
Sbjct: 90  LGLNIIRKECKHLGLRPGFSIFDDGDTKSLLKDIMHR 126


>gi|134291623|ref|YP_001115392.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Burkholderia
           vietnamiensis G4]
 gi|134134812|gb|ABO59137.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Burkholderia
           vietnamiensis G4]
          Length = 1264

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 20/166 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPS---------TLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    +RL+L +  P           +L +T T AA  E+  R+   
Sbjct: 29  LIEASAGTGKTFTIAMLYVRLVLGHEPPGARAEPLTPPEILVVTFTDAATKELRDRIRAR 88

Query: 86  ITAWSHL---------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +   +                  ++          SD       L    E      V TI
Sbjct: 89  LNEAAACFQVEADAVTPQGAGETDLLHALRSDYPPSDWPACARRLQLAAEWMDDAAVSTI 148

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           H +C  ++++   ++   S F+ A E    +L+ E  +    + M 
Sbjct: 149 HGWCNRMLREHAFDS--DSLFSQALETDQTELLAEVVRDYWRTFMT 192


>gi|255034929|ref|YP_003085550.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
 gi|254947685|gb|ACT92385.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
          Length = 1112

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 21/185 (11%)

Query: 37  SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           S++AGSGKT+ L +  L+L L   +  +   +L +T T AAA EM  R+L ++  ++  +
Sbjct: 6   SSSAGSGKTYTLTKEYLKLALHSNSELYFRHILAVTFTNAAANEMKDRILLMLRTFAAYT 65

Query: 94  DEI---------------LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           +                    E          +   ++A+ +   IL       V TI  
Sbjct: 66  ETDAQPHPMMRDVVVEMYPDTEHNTELFAGACQLIAARAQMVFGQILHRYSDFSVMTIDK 125

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           F + ++  F  E  I   F    +     L++ A    LA I  +  E L     +    
Sbjct: 126 FTQRLISSFTDELGIPFIFETQLDSD---LLDGAVDRLLARIGQEGEEVLTDIVEKYYRE 182

Query: 199 SNDED 203
           + +E 
Sbjct: 183 NAEEG 187


>gi|302392152|ref|YP_003827972.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501]
 gi|302204229|gb|ADL12907.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501]
          Length = 1033

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 14/193 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93
            + A+AG+GKT+ L    +  LL       ++ +T T+ A AE+  R+ E +    +  +
Sbjct: 4   VLKASAGTGKTYRLSLEYVAALLRGEDFGKIVVMTFTRKATAEIRERIFEHLEDILAEGA 63

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEAN 152
           +  +   + +I      + D+S+   +   +L     +KV TI +F   I ++       
Sbjct: 64  ESEVVKNLEEIYNDL--EVDLSQLEEVYEKMLCNKDQIKVYTIDSFINHIFREAIAPYLG 121

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLIS 209
           I   + I D++Q+++++E   K  L      NN    K   + L  + + DI+   TLI 
Sbjct: 122 I-YSYEIVDDDQNREIVERVFKELL------NNPADFKLMEDFLLENVERDIDNYLTLID 174

Query: 210 DIISNRTALKLIF 222
            +I +R    LI 
Sbjct: 175 RLIKDRWKFLLIE 187


>gi|313673705|ref|YP_004051816.1| uvrd/rep helicase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940461|gb|ADR19653.1| UvrD/REP helicase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 1029

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 28/217 (12%)

Query: 36  VSANAGSGKTHILVQRVLRLL-------------LANAHPSTLLCLTHTKAAAAEMSHRV 82
           + A+AGSGKT+ L  R + LL             +     S+++ +T T  A+ EM  RV
Sbjct: 20  IKASAGSGKTYNLASRFIELLGLYLKNKNFSVAIIPPKDLSSIIAITFTNKASLEMKDRV 79

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           ++ +     +    L            +      AR LLI IL+    + V TI +F   
Sbjct: 80  MKFLKGLGGIRKNELEK----------SDITKEDARKLLIHILKNFEHINVTTIDSFMNT 129

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           + + F ++  +   + I     S+K+ E A +         N E+L      +L +  D 
Sbjct: 130 LHKAFAVDLGVYPDYDIT--FDSEKIFESAVEMLFED--EKNFEDLINFLNTLLILDKDG 185

Query: 203 -DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            D E +I   +     ++L     SY    K I+  +
Sbjct: 186 MDGEKIIIKNLKEYHKIELPENVISYDELEKRIKGDI 222


>gi|288927884|ref|ZP_06421731.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330718|gb|EFC69302.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 1075

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    +++LL N H    +L +T T  A  EM  R+L  +     L    
Sbjct: 11  ASAGSGKTFTLAVNYIKILLNNPHSYRNILAVTFTNKATEEMKLRILSQLYGIWKLLPSS 70

Query: 97  LS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                +IT   G  P  +   +A   L  +L      +V+TI  F +A+++    E ++T
Sbjct: 71  KGYLDKITNELGISPEYAS-QQAGTALSNLLHNYNYFRVETIDTFFQAVLRNLARELDLT 129

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASI 180
           ++  +   +   +  ++A    +  +
Sbjct: 130 ANLHVGLNDSQVE--QQAVDKLIEDL 153


>gi|20384889|gb|AAL79572.1| exonuclease V beta subunit RecB [Pseudomonas syringae]
          Length = 1227

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 14/174 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLL 66
           +++ K+   LA     S  + A+AG+GKT  +    LRL+L +            P  +L
Sbjct: 1   MNEQKTPLALAFPLRGSQLIEASAGTGKTFTISALYLRLILGHGAGESGFGRELLPPQIL 60

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITI 124
            +T T AA  E+  R+   +   +    + + A   +      +      +     L   
Sbjct: 61  VVTFTDAATKELRDRIRTRLAEAARFFRDEIEAPDALVAQLRDQFAPGQWAACAGRLDIA 120

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            +      V TIH++C+ ++++   ++   S F    E     L+ E  +    
Sbjct: 121 AQWMDEAAVSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWR 172


>gi|329767683|ref|ZP_08259202.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341]
 gi|328839033|gb|EGF88621.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341]
          Length = 1212

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 43/229 (18%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77
            T  +    +       V+A AGSGKT +L +R+ R +         LL LT T AAA  
Sbjct: 18  PTPPQWQAIAITGADVLVAAAAGSGKTEVLSERIARKVATKRWDIDRLLVLTFTTAAAKN 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ + I+     +             K+ +   + K R L+           V TI 
Sbjct: 78  MIVRIEDKISERLLST------------NKEEDLLFLRKQRMLM-------NDAYVSTID 118

Query: 138 AFCEAIMQQFPLEAN---------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +FC  ++++F              ++ +F I     SK L+ E   + L  ++ D++   
Sbjct: 119 SFCLNVLKKFYYLVEEKIDNQIKYLSPNFGIL--ANSKGLLSETIGNVLEELVKDDSSST 176

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
              F       + ++I + I DI          +   +    +K +E+ 
Sbjct: 177 DLLFTVF---DSKQNISSFIIDI---------YYKLLNIPNFQKYLEED 213


>gi|238755779|ref|ZP_04617111.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473]
 gi|238706006|gb|EEP98391.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473]
          Length = 672

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      PS +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYKPSHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D +    L+++  +  L     ++  +L++    I   
Sbjct: 87  LGLEIIKKEYKALGMKSNFSLFDAQDQMGLLKDLTQKWLE----EDKTQLQQLISTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|46447235|ref|YP_008600.1| ATP-dependent DNA helicase, mutU [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400876|emb|CAF24325.1| probable ATP-dependent DNA helicase, mutU [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 668

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 38/165 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
           +L +    ++           + A AGSGKT +L  R+  L+   N  P  +L LT T  
Sbjct: 4   ELETLNPEQKHAVKLINGRVLILAGAGSGKTRVLTMRMAYLIRYLNVSPRAILGLTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM HR+   +                         S ++K   L             
Sbjct: 64  AAAEMRHRLANFV------------------------DSKLAKQVTL------------- 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            T H FC  I++Q   +   T+ F++ DE+  ++LI    +  L 
Sbjct: 87  CTFHGFCMQILRQDIAKLGYTTKFSLYDEQDVQRLINMIVRDILQ 131


>gi|149192179|ref|ZP_01870398.1| ATP-dependent DNA helicase Rep [Vibrio shilonii AK1]
 gi|148833993|gb|EDL51011.1| ATP-dependent DNA helicase Rep [Vibrio shilonii AK1]
          Length = 185

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     + +     +    V A AGSGKT ++  ++  L+ +       +  +T T  AA
Sbjct: 1   MKLNPQQDMAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQSCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKNESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L ++    
Sbjct: 84  FHTMGLNIIRREYKALGLKAGFSLFDDQDQMALLKE-----LTEQQLDGDKDLLRSLLGA 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|53805125|ref|YP_113202.1| exodeoxyribonuclease V subunit beta [Methylococcus capsulatus str.
           Bath]
 gi|53758886|gb|AAU93177.1| exodeoxyribonuclease V, beta subunit [Methylococcus capsulatus str.
           Bath]
          Length = 1200

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 8/185 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA---WS 90
            + A+AG+GKT  +    LRLLL        +L +T T AA AE+  R+   I     + 
Sbjct: 19  LIEASAGTGKTWNICGLYLRLLLEQEREVQNILVVTFTNAATAELRERIRSRIVETLVYL 78

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                     +T +        D +  R  L   L       + TIH FC+  +   P  
Sbjct: 79  RGGGGAADPFVTGLVAALEGGFDRALLRQRLERALLAFDEAAIFTIHGFCQRALAGTPFA 138

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLIS 209
           A +   FA+   +    L +E         +       +     +LE  +D E   +L+ 
Sbjct: 139 AGLP--FALELVQDDAMLAQEVANDFWRRRVAAGGLS-RAMIAHLLEAGDDPEKYASLLG 195

Query: 210 DIISN 214
             ++ 
Sbjct: 196 HALAK 200


>gi|33440279|ref|ZP_00141864.1| COG0210: Superfamily I DNA and RNA helicases [Pasteuria nishizawae
           str. North American]
          Length = 160

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 40/147 (27%)

Query: 13  TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
             D ++    +Q  A         V A AGSGKT +L  RV  ++ +  A P ++LC+T 
Sbjct: 11  LQDTLATLNEQQRRAVITTEGPLLVMAGAGSGKTRVLTYRVGHIVASQLAKPWSVLCITF 70

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM HR+  +++  +                                       G
Sbjct: 71  TNKAATEMRHRIHALLSGQTT--------------------------------------G 92

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF 157
           + V T H  C  I++          +F
Sbjct: 93  VWVHTFHGLCARILRTDIQHLGYDPYF 119


>gi|327542150|gb|EGF28643.1| ATP-dependent DNA helicase PcrA [Rhodopirellula baltica WH47]
          Length = 787

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 40/156 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T ++            + A  GSGKT ++  R+  +L +   P  +  LT T  AA EM 
Sbjct: 9   TAAQAEAVQHIDGPLLIIAGPGSGKTRVVTHRIAYMLRSGIRPWQIAALTFTNKAADEMR 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV                                         +L     + + T H F
Sbjct: 69  SRV----------------------------------------NLLAPNQPVWMGTFHRF 88

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           C   ++++     +  +++I D   SK  ++ A  S
Sbjct: 89  CAQQLRRYAPMVGLAENYSIYDSSDSKSAMKRAIAS 124


>gi|296282686|ref|ZP_06860684.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 769

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 42/186 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++           + A AG+GKT  L  R+  L+    A PS +LC+T T  AA EM
Sbjct: 24  NPPQREAVLTTEGPVLMLAGAGTGKTSALTARLAHLVAMRLAWPSEILCVTFTNKAAREM 83

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   I                                          G   + T HA
Sbjct: 84  RERVGRHIGDAVE-------------------------------------GMPWLGTFHA 106

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               ++++      + S+F I D +   +L+    K+ +A   LD      +    +++ 
Sbjct: 107 IGAKMLRRHAELVGLQSNFTIIDPDDQLRLL----KTLIAEADLDEKRWPARQLAGLIDR 162

Query: 199 SNDEDI 204
             +  +
Sbjct: 163 WKNRGL 168


>gi|15643994|ref|NP_229043.1| ATP-dependent DNA helicase [Thermotoga maritima MSB8]
 gi|4981792|gb|AAD36313.1|AE001779_15 ATP-dependent DNA helicase [Thermotoga maritima MSB8]
          Length = 648

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 39/178 (21%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +  +     EQ  A  +      V A  GSGKT ++  ++  LL     PS +L +T T+
Sbjct: 13  LSFLEDLDEEQRRAVVESEGRCIVIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTR 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R           +  +   E++++                            
Sbjct: 73  AAAREMVER-----------AKAVTGRELSEMLA-------------------------- 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             T H  C   ++++     +  +++I D E ++ L+  A+   L     +  +   +
Sbjct: 96  -GTFHHVCNHFLRKYAPYVGLERNYSILDREDAESLMRHARSKYLERKSKEERKNFPQ 152


>gi|77456917|ref|YP_346422.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|77380920|gb|ABA72433.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens Pf0-1]
          Length = 1229

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 14/166 (8%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74
            LA     S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA
Sbjct: 8   ALAFPLKGSQLIEASAGTGKTFTISALYLRLILGHGGEGSGFGRELLPPQILVVTFTDAA 67

Query: 75  AAEMSHRVLEIITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             E+  R+   +   +     +      +      + +        + L    +      
Sbjct: 68  TKELRERIRTRLAEAARFFRDETSPPDALIDELRAQFDPQQWPGCANRLDIAAQWMDEAA 127

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           V TIH++C+ ++++   ++   S F    E     L+ E  +    
Sbjct: 128 VSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWR 171


>gi|73543009|ref|YP_297529.1| ATP-dependent DNA helicase Rep [Ralstonia eutropha JMP134]
 gi|72120422|gb|AAZ62685.1| ATP-dependent DNA helicase Rep [Ralstonia eutropha JMP134]
          Length = 704

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 32/157 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNAAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEDKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++   +    + L  +                              L V 
Sbjct: 62  AKEMQERIGKLMEGKTTREGKRLPLK-----------------------------QLTVC 92

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++       +   F+I D +    LI+E
Sbjct: 93  TFHSLGVQILRMEAEHVGLKPQFSIMDSDDCFGLIQE 129


>gi|148270656|ref|YP_001245116.1| UvrD/REP helicase [Thermotoga petrophila RKU-1]
 gi|170289362|ref|YP_001739600.1| UvrD/REP helicase [Thermotoga sp. RQ2]
 gi|281412966|ref|YP_003347045.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10]
 gi|147736200|gb|ABQ47540.1| UvrD/REP helicase [Thermotoga petrophila RKU-1]
 gi|170176865|gb|ACB09917.1| UvrD/REP helicase [Thermotoga sp. RQ2]
 gi|281374069|gb|ADA67631.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10]
          Length = 648

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 39/178 (21%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +  +     EQ  A  +      V A  GSGKT ++  ++  LL     PS +L +T T+
Sbjct: 13  LSFLEDLDEEQRKAVVESEGRCIVIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTR 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R           +  +   E++++                            
Sbjct: 73  AAAREMVER-----------AKTVTGRELSEMLA-------------------------- 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             T H  C   ++++     +  +++I D E ++ L+  A+   L     +  +   +
Sbjct: 96  -GTFHHVCNYFLRKYAPYVGLERNYSILDREDAESLMRHARSKYLERKSKEERKNFPQ 152


>gi|195953827|ref|YP_002122117.1| UvrD/REP helicase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933439|gb|ACG58139.1| UvrD/REP helicase [Hydrogenobaculum sp. Y04AAS1]
          Length = 715

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 45/207 (21%)

Query: 13  TIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCL 68
             DL+     EQ  +     +   V A AGSGKT  ++ + L L+    +    S LL +
Sbjct: 6   LKDLLEGLNEEQRRVVLSNGKPILVVAGAGSGKTKTIIHKALYLIFNQEYKIRGSRLLMI 65

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA E+  R+ +                   + GK  N                  
Sbjct: 66  TFTNKAANEIKERIQKY----------------ASVLGKNINIE---------------- 93

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               + T H+    I+++      +++ F + DEE S +L +   K     I  D  ++L
Sbjct: 94  ---WIGTFHSVASRIIRKHHAIFGLSNDFRVLDEEDSVRLFKSILKD--QDIKKDEAKKL 148

Query: 189 KKAFYEILE----ISNDEDIETLISDI 211
             A  + +E    +  D   +  + ++
Sbjct: 149 YIAVNQAIEGIRFLDEDNKFDRKVLEL 175


>gi|194291146|ref|YP_002007053.1| DNA helicase and single-stranded DNA-dependent atpase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224981|emb|CAQ70992.1| DNA helicase and single-stranded DNA-dependent ATPase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 698

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 32/157 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEDKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++   +    + +  +                              L V 
Sbjct: 62  AKEMQERIAKLMEGKTTREGKRIPLK-----------------------------QLTVC 92

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++       +   F+I D +    LI+E
Sbjct: 93  TFHSLGVQILRMEAEHVGLKPQFSIMDSDDCFGLIQE 129


>gi|157375075|ref|YP_001473675.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3]
 gi|157317449|gb|ABV36547.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3]
          Length = 1251

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT  +    +RLLL +    P     +L +T T AA  E+  R+   
Sbjct: 40  GGSRLIEASAGTGKTFTIAGLYVRLLLGHEIEKPLSCEQILVVTFTNAATGELRDRIRRK 99

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+          ++ +   +   +S+   A   L   L++     + TIH FC+ I+
Sbjct: 100 IQLAYRRFIGLETDDDLIESLYRLTPESERHLALKRLDLALKSLDEASIFTIHGFCQRIL 159

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179
                E+++   S F + D E     +  A +     
Sbjct: 160 ADMAFESSLLFESEFTLDDSE----FLHHAVRDFWRE 192


>gi|114798822|ref|YP_761616.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444]
 gi|114738996|gb|ABI77121.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444]
          Length = 781

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 52/220 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            ++    EQ  A         V A AG+GKT +L  R+  ++    A+PS  L +T T  
Sbjct: 31  YLNGLNPEQRDAVLHTEGPLLVLAGAGTGKTRVLTSRLAHIVATRLAYPSQTLTVTFTNK 90

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R   ++                                              +
Sbjct: 91  AAREMRERAQALLGDAGEGLR-------------------------------------WL 113

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I+++      + S F I D +   +L     K  + +  LD      +   
Sbjct: 114 GTFHSISAQILRKHAELVGLKSSFTILDTDDQIRL----CKQIVQAENLDPKRWTPRYLA 169

Query: 194 EILEISNDEDI-------ETLISDIISNRTALKLIFFFFS 226
            +++   +  +       E   +++  N  A+K    + +
Sbjct: 170 GLIDGWKNRALTPSKVPPEE--AELFGNGKAIKCYEIYQA 207


>gi|47459324|ref|YP_016186.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
 gi|47458654|gb|AAT27975.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
          Length = 723

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
             +D ++  K ++L          + A AGSGKT +LV ++  L+   N  P  +L +T 
Sbjct: 7   NLLDSLN--KDQKLAVVFNDSPLRIIAGAGSGKTRVLVHKIAYLIQKMNVKPYQILAVTF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+  ++                                            
Sbjct: 65  TNKAANEMKERIKTLVDNHESEPL------------------------------------ 88

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + T HA C  I+++         +F I D      +++   +  
Sbjct: 89  --ISTFHALCVYILRRDIDVLKYPKNFTILDVADQFDILKNIYEKF 132


>gi|293189192|ref|ZP_06607916.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309]
 gi|292821864|gb|EFF80799.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309]
          Length = 1142

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 31/186 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAA 75
           + T  +  +   P R   V A AGSGKT  +  RVL LL  +    PS++L LT T+ AA
Sbjct: 17  TPTPEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLSPSSILGLTFTRKAA 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+ E I   S                             L   + E P  L   T
Sbjct: 77  GELGERLRERIRLLSREMP------------------------QLRERLDEDPVSL---T 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            ++F E I+ +  +   I   F++  E  +  L+ +  ++    +  D +     A  +I
Sbjct: 110 YNSFAERIVSEHGMRIGIDPDFSMLSEAGALDLMLQIVEAWPTDL--DEDLTPLGAVGQI 167

Query: 196 LEISND 201
           L ++ +
Sbjct: 168 LHLAGE 173


>gi|50292981|ref|XP_448923.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528236|emb|CAG61893.1| unnamed protein product [Candida glabrata]
          Length = 1088

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 38/158 (24%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           D++     +Q  A   DPT++  V A  G+GKT +L  RV  L+L     P  ++  T T
Sbjct: 16  DILGGLNQQQRAAVTFDPTKALQVIAGPGTGKTKVLTSRVAYLILHYRIDPRDIIVTTFT 75

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  ++      S +I+                                  
Sbjct: 76  NKAAKEMKDRLAVLLENTEFRSSDIM---------------------------------- 101

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + T H+ C  I+ +F     +   + I DE++ + ++
Sbjct: 102 -IGTFHSICLKILARFGSRVGLQEGWRIVDEKEIEVIM 138


>gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
 gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
          Length = 862

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 44/212 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM
Sbjct: 4   NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++ + +   +                                      V T H+
Sbjct: 64  KGRIQSLVGSPAKAVE--------------------------------------VSTFHS 85

Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  I+QQ       + +   I DEE  K+L E  +   L  +   N   + K +  + E
Sbjct: 86  FCFFILQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANVIAMVKEYRSLYE 145

Query: 198 ISNDE---DIETLISDI-ISNRTALKLIFFFF 225
             +D+   D +  I  +    R A++  F  F
Sbjct: 146 FYSDDLVGDYKRTIERLQKEQREAIEQQFSSF 177


>gi|297569240|ref|YP_003690584.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925155|gb|ADH85965.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2]
          Length = 760

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 39/167 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            +E +  ++  + E + A  P     V A AGSGKT  LV R+  L+     P +LL LT
Sbjct: 18  AAEALAGLNPAQREAVSA--PAGPILVIAGAGSGKTRTLVHRLAYLVEQGVAPESLLLLT 75

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA EM                                   +++A HLL     +  
Sbjct: 76  FTRKAAQEM-----------------------------------IARAGHLLPDA--SCR 98

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            +   T HA    I++++       ++F I D+  ++ +I   K S 
Sbjct: 99  QVTGGTFHATANLILRRYAAHVGYRANFTILDQGDAEGIINLLKSSL 145


>gi|154509554|ref|ZP_02045196.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799188|gb|EDN81608.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC
           17982]
          Length = 1142

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 33/203 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAA 75
           + T  +  +   P R   V A AGSGKT  +  RVL LL  +    PS++L LT T+ AA
Sbjct: 17  TPTHEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLSPSSILGLTFTRKAA 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+ E I   S                             L   + E P  L   T
Sbjct: 77  GELGERLRERIRLLSREMP------------------------QLRERLDEDPVSL---T 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            ++F E I+ +  +   I   F++  E  +  L+ +  ++    +  D +     A  +I
Sbjct: 110 YNSFAERIVSEHGMRIGIDPDFSMLSEAGALDLMLQIVEAWPTDL--DEDLTPLGAVGQI 167

Query: 196 LEISNDEDIETLISDIISNRTAL 218
           L ++ +        +  S R AL
Sbjct: 168 LHLAGEFAEHGYTVE--SAREAL 188


>gi|294141179|ref|YP_003557157.1| exodeoxyribonuclease V subunit beta [Shewanella violacea DSS12]
 gi|293327648|dbj|BAJ02379.1| exodeoxyribonuclease V, beta subunit [Shewanella violacea DSS12]
          Length = 1230

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 17/172 (9%)

Query: 21  KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTH 70
           + +Q  A D        S  + A+AG+GKT+ +    +RLLL +    P     +L +T 
Sbjct: 5   EPKQSQALDTLTLPFGGSRLIEASAGTGKTYTIAGLYVRLLLGHGIDKPLTCQQILVVTF 64

Query: 71  TKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           T AA  E+  R+   I  A+ H        E+         +S    A   L   L++  
Sbjct: 65  TNAATGELRDRIRNKIQLAYRHFIGIDTGDELLASLHSATPESARPLALKRLDLALKSLD 124

Query: 130 GLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179
              + TIH FC+ I+     E+++   S F + D E     +  A +     
Sbjct: 125 EASIFTIHGFCQRILADMAFESSLLFESEFTLDDSE----YLHHAVRDFWRE 172


>gi|241889348|ref|ZP_04776649.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella
           haemolysans ATCC 10379]
 gi|241863891|gb|EER68272.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella
           haemolysans ATCC 10379]
          Length = 1217

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 37/221 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76
           S +  +    +       V+A AGSGKT +L +R+ R + +N      LL LT T AAA 
Sbjct: 17  SYSAPQWQAIAITGADVLVAAAAGSGKTEVLSERIARKVASNRWDIDRLLVLTFTTAAAK 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
            M  R+   I+     +             K+ +   + K R L+           + TI
Sbjct: 77  NMIVRIENKISERLLST------------NKEEDLIYLRKQRMLM-------NDAYISTI 117

Query: 137 HAFCEAIMQQFPLEAN---------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            +FC  ++++F              ++ +F+I     S+ L+ E   + L  ++ +++  
Sbjct: 118 DSFCLNVLKKFYYLVEEKIDNEIKYLSPNFSIL--ANSRGLLNETVGNVLEELVQEDSNT 175

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
               F       N          II     L  I  F +YL
Sbjct: 176 TDLLFTVFGSKQNISSY------IIDLYYKLLNIPNFQNYL 210


>gi|168069914|ref|XP_001786623.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660850|gb|EDQ48563.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 25/133 (18%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75
            +  +    S       V+A AGSGKT +LV+R++R +L          LL  T TKAAA
Sbjct: 176 WSDDQWKAISLHGDHILVAAAAGSGKTAVLVERIIRKILNEEQGFSVDRLLVATFTKAAA 235

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ + +                +   K P  + + +   LL       G   + T
Sbjct: 236 AEMRERIRDAL---------------DRQLEKDPENTHLRRQLSLL-------GRASITT 273

Query: 136 IHAFCEAIMQQFP 148
           +H+FC  ++++  
Sbjct: 274 LHSFCLEVIRRLY 286


>gi|207738731|ref|YP_002257124.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           IPO1609]
 gi|206592099|emb|CAQ59005.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           IPO1609]
          Length = 691

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 56/165 (33%), Gaps = 31/165 (18%)

Query: 21  KSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
             +Q  A +          T    V A AGSGKT  L  RV  L+   A P  +L LT +
Sbjct: 2   NDQQRQAVEFGVSGADAAETGPLLVLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFS 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA+E+S R   ++      S    SA  T  Q   P                      
Sbjct: 62  RRAASELSSRAGHLLARAMQGSTGTRSAAGTTYQTALP---------------------- 99

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H     +++++     +   F I D   S  L+   +   
Sbjct: 100 WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDSADLLNVVRHEL 144


>gi|148549739|ref|YP_001269841.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida F1]
 gi|148513797|gb|ABQ80657.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
           putida F1]
          Length = 1224

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 13/159 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATKELRERI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140
              +   +      L      +   + +  +    +    L   ++      V TIH +C
Sbjct: 75  RARLAEAARFFRGELEGADPLLHQLRDDYPQETWLRCAGRLEIAVQWMDEAAVSTIHGWC 134

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           + ++++   ++   S F    E    +L+ +  +     
Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171


>gi|28868005|ref|NP_790624.1| exodeoxyribonuclease V subunit beta [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851241|gb|AAO54319.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 1230

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + + A  E+     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEICAPDELISQLREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|300721421|ref|YP_003710692.1| Rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627909|emb|CBJ88455.1| Rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 676

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+ A       +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRACGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKETK-------------------------------------GLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L+++     L     ++ + L+K    I   
Sbjct: 87  LGLEIIKREYQALGMKSNFSLFDDQDQMALLKDLTADLLE----EDKDLLQKLISSISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|297243751|ref|ZP_06927681.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis AMD]
 gi|296888172|gb|EFH26914.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis AMD]
          Length = 1417

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 74/193 (38%), Gaps = 36/193 (18%)

Query: 22  SEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
            +      P  ++  + A AGSGKT+ + +RV+ L+     P ++L LT T  AA+E+  
Sbjct: 18  EQAAAIQAPTNKNMIIVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAASELLA 77

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV + ++  S   +++++   +                              V T  AF 
Sbjct: 78  RVAQAVSQHSSEINKLINNGNSASSSGFLKPE--------------------VMTYDAFF 117

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           ++I++Q+ L      +     +  +++LI+                          EI +
Sbjct: 118 QSIVRQYGLLVGFDQNTQPLSDAGARELIKPLVNDY---------------VTNHAEILS 162

Query: 201 DEDIETLISDIIS 213
               + LI D+++
Sbjct: 163 WYSFDALIDDVLA 175


>gi|291454013|ref|ZP_06593403.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356962|gb|EFE83864.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1201

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 24/182 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 26  GIPFTPEQMACVTAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +T       E L+      Q +                   TPG   + 
Sbjct: 86  AGELAERVRKALTEAGVTEPEPLAPPGAGPQDE------------------HTPGEPVIS 127

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +          +  L ++F +
Sbjct: 128 TYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLRE-----APGAHPALTRSFPD 182

Query: 195 IL 196
           ++
Sbjct: 183 LV 184


>gi|160933076|ref|ZP_02080465.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753]
 gi|156868150|gb|EDO61522.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753]
          Length = 740

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 40/169 (23%)

Query: 10  HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
            S   + + +    QL A         + A AGSGKT +L+ R+  ++  + A P  +L 
Sbjct: 1   MSTMQEKLKKMNPRQLEAVLHTEGPLLILAGAGSGKTTVLINRIAYIIDQSLAKPWQILA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA E+  R+  ++                                       +T
Sbjct: 61  ITFTNKAAGELKERLTAMLG--------------------------------------DT 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            G +   T H+ C  I+++       +SHF + D + SK+L+++ +K+ 
Sbjct: 83  GGDVWAATFHSTCARILRRDGDRIGYSSHFTVYDTDDSKRLVKDCQKAL 131


>gi|327398224|ref|YP_004339093.1| UvrD/REP helicase [Hippea maritima DSM 10411]
 gi|327180853|gb|AEA33034.1| UvrD/REP helicase [Hippea maritima DSM 10411]
          Length = 1025

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 35/170 (20%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA-----------------------NAHPSTLLCLT 69
           +  + A+AGSGKT+ L +R L +L                              +++ +T
Sbjct: 11  NLSIEASAGSGKTYRLAERFLLMLTEYLKSKATLKSLKFCGGNQETCQTPTSIDSIIAIT 70

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AAAEM  RV+  +   + +          K         D   +  LL+ I+E   
Sbjct: 71  FTNKAAAEMKERVISFLKCLAGI----------KSDNVPDVGLDKDSSFKLLVEIVEKFS 120

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
              + TI +F   I++ F  + NI   + I  +  +  + +EA ++ +A 
Sbjct: 121 DFHITTIDSFMNRILKAFAADLNIHPDYEITFDRDT--IFDEAFETLVAD 168


>gi|291280321|ref|YP_003497156.1| ATP-dependent DNA helicase PcrA [Deferribacter desulfuricans SSM1]
 gi|290755023|dbj|BAI81400.1| ATP-dependent DNA helicase PcrA [Deferribacter desulfuricans SSM1]
          Length = 683

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 44/192 (22%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
            I L+      Q  A +       V + AG+GKT ++  ++  L+    A P  +  +T 
Sbjct: 1   MISLLENLNESQKEAVEYIDSPLLVLSGAGTGKTRVITYKIAYLIKKKIAQPERIFAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ ++I   S                                        
Sbjct: 61  TNKAADEMKKRIYDLIGEKSF--------------------------------------D 82

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + + T H+    I+++      + S+F I D++    LI    ++ L  + +D+ +   K
Sbjct: 83  IWLGTFHSNALRILRRDGHLLGLPSNFTIIDQDDRLALI----RNILKRVGIDDKKYPPK 138

Query: 191 AFYEILEISNDE 202
            +  I+    + 
Sbjct: 139 MYLNIISNYKNS 150


>gi|288941210|ref|YP_003443450.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
 gi|288896582|gb|ADC62418.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
          Length = 669

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 39/201 (19%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +++    QL A         V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 1   MAELNPRQLDAVHYTAGPLLVLAGAGSGKTRVITQKIAHLIEQIGLAPRHIRAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV   +                                           GL + 
Sbjct: 61  AREMRERVSHQLKGTQTR-------------------------------------GLAIS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     I+++ P  A + S FA+ D + ++ L++E  +    +  L       +    
Sbjct: 84  TFHRLGLEILRRHPEAAGLHSGFALLDAQDAESLLKEGLRGLAEADALSPGAVQHRISRW 143

Query: 195 ILEISNDEDIETLISDIISNR 215
             ++ + E    L  D    R
Sbjct: 144 KNDLVDPERAAQLAEDAFEAR 164


>gi|154244726|ref|YP_001415684.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154158811|gb|ABS66027.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1143

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 38/154 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             S+   A+       + A  G+GKT  LV+RVL LL     P+ +L LT +  AA E+S
Sbjct: 202 DPSQDRAAAHRDTPFQLQAGPGTGKTRTLVKRVLSLLADGIDPAAILVLTFSNRAAGELS 261

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                                      L+    +    L + T HAF
Sbjct: 262 ER--------------------------------------LIAAAPDAAPKLWIGTFHAF 283

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
              +++++  +  +T + A+ D   +  ++EE  
Sbjct: 284 GLDLVRRYHDKLGLTPNPALFDRSDAIAVLEEIL 317


>gi|331019804|gb|EGH99860.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1230

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + + A  E+     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEICAPDELISQLREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|146307014|ref|YP_001187479.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
           mendocina ymp]
 gi|145575215|gb|ABP84747.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
           mendocina ymp]
          Length = 1209

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSRLIEASAGTGKTFTISALYLRLILGHGGDAAFREPLLPPQILVVTFTDAATRELRDRI 74

Query: 83  LEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              +   + +   +    ++ +       ++   +    L    +      V TIH +C+
Sbjct: 75  RARLVEAATVFRGDAQGDDLLRELRSDFAQTQWDECARRLELAAQWMDEAAVSTIHGWCQ 134

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            ++++   ++   S F+   E    +L+ E  +     
Sbjct: 135 RMLREHAFDSG--SLFSQTLETDHSELLAEVVRDYWRQ 170


>gi|330967151|gb|EGH67411.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 1230

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + +SA  ++     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEISAPDDLINELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|300870941|ref|YP_003785812.1| ATP-dependent DNA helicase [Brachyspira pilosicoli 95/1000]
 gi|300688640|gb|ADK31311.1| ATP-dependent DNA helicase [Brachyspira pilosicoli 95/1000]
          Length = 666

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 40/169 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
            + ++ ++ +++ + E +L  D      + A AGSGKT ++ +++  L+   +  P  ++
Sbjct: 4   NKQNDLLNGLNENQKEGVLHID--SPLLLLAGAGSGKTLVITKKIAYLITEKHIRPENIM 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  RV  ++                                        
Sbjct: 62  AVTFTNKAANEMKERVCSMLPEIK------------------------------------ 85

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            P  L ++T H+ C  I++      N    F I DE     +I++  K 
Sbjct: 86  -PFRLFIRTFHSACLRILKDNAQYLNYREDFLILDEGDRLSVIKKIMKE 133


>gi|239982165|ref|ZP_04704689.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1191

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 24/182 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 16  GIPFTPEQMACVTAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +T       E L+      Q +                   TPG   + 
Sbjct: 76  AGELAERVRKALTEAGVTEPEPLAPPGAGPQDE------------------HTPGEPVIS 117

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +          +  L ++F +
Sbjct: 118 TYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLRE-----APGAHPALTRSFPD 172

Query: 195 IL 196
           ++
Sbjct: 173 LV 174


>gi|254559023|ref|YP_003066118.1| ATP-dependent DNA helicase [Methylobacterium extorquens DM4]
 gi|254266301|emb|CAX22062.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
           DM4]
          Length = 1139

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 41/188 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++   S+    +       + A  G+GKT  L++RV  L+     P+++L LT +  AA 
Sbjct: 193 LTPDPSQDAAVAHRGSPYLLQAGPGTGKTRTLIRRVTSLIDEGIDPNSILVLTFSNKAAG 252

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R                                      L ++  E    + + T 
Sbjct: 253 ELMDR--------------------------------------LALSHPEAAASVWIGTF 274

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML---DNNEELKKAFY 193
           HAF   I+++F     +     + D+  +  ++EE   +          D  E L +   
Sbjct: 275 HAFGLDIVRRFHDRLGLPPGPRLVDKATAITMLEEVVPTLDLDHYRDLWDPEENLSEILA 334

Query: 194 EILEISND 201
            I    ++
Sbjct: 335 AISRAKDE 342


>gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
 gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
          Length = 862

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 40/185 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM
Sbjct: 4   NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++ + +   +                                      + T H+
Sbjct: 64  KDRIQSLVGSPAKAVE--------------------------------------ISTFHS 85

Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++QQ       + +   I DEE  K+L E  +   L  +   N   + K +  +  
Sbjct: 86  FCFFVLQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANIIGMVKEYRSLYG 145

Query: 198 ISNDE 202
             +D+
Sbjct: 146 FYSDD 150


>gi|89076421|ref|ZP_01162746.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34]
 gi|89047889|gb|EAR53482.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34]
          Length = 1203

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 15/166 (9%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLC 67
           +QT   Q +A     +  + A+AG+GKT  +V   LRLLL +               +L 
Sbjct: 5   TQTNILQPMAFPLHGTRLIEASAGTGKTFTIVSLYLRLLLGHGNDDCAHLKPLDVDQILV 64

Query: 68  LTHTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +T T+AA AE+  R+ + I     S    E +      I     +  D   A  +L    
Sbjct: 65  VTFTEAATAELRDRIRKGIRDAYVSFSRGESVGPFKDTISALLNDIHDHKYAARVLKDAE 124

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169
                  V TIH FC+ ++ Q   E+     + F + DE Q K L+
Sbjct: 125 RRMDEASVYTIHGFCQRMLTQNAFESGCRFNNEF-VTDESQLKNLV 169


>gi|83592871|ref|YP_426623.1| ATP-dependent DNA helicase Rep [Rhodospirillum rubrum ATCC 11170]
 gi|83575785|gb|ABC22336.1| ATP-dependent DNA helicase, Rep family [Rhodospirillum rubrum ATCC
           11170]
          Length = 768

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 43/190 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      ++   +       V + AG+GKT +L  R+ ++L      P  +L +T T  A
Sbjct: 25  LAGLNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRA 84

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R   +I   +                                        + + 
Sbjct: 85  AREMRERAGAMIGPMAE--------------------------------------QVWLG 106

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA    ++++      + S F I D +   +L+++     L +  +D  +   +A   
Sbjct: 107 TFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQ----ILEAEGIDTKKWTPQAGMG 162

Query: 195 ILEISNDEDI 204
           +++   D+ +
Sbjct: 163 LIQRWKDKGL 172


>gi|329894920|ref|ZP_08270719.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088]
 gi|328922649|gb|EGG29984.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088]
          Length = 1097

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++  A DPT S  V A AGSGKT +LVQR+L LL   +HP  ++ +T T+ AAAEM 
Sbjct: 3   DQVQRDRAIDPTASCCVVAPAGSGKTSLLVQRMLALLARVSHPEQIVAITFTRKAAAEMR 62

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
              +  +   + +       E  ++  +   K  +S A     ++ E    L+  TI +F
Sbjct: 63  A-RMAEVFELAQVKQLSEVPEYERVSLEL-AKHALSNASERGWSLPEQLERLQFMTIDSF 120

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C ++++Q PL + +      A  E    L   A    L S      E L      +    
Sbjct: 121 CASLVRQMPLASRMGGVMTPA--EPVADLYRAAVLDLLQSSEPQIREHLPPILAALGNRW 178

Query: 200 NDEDIETLISDIISNRTALKLIFF 223
            D  I+ L S++++ R   +L  F
Sbjct: 179 -DSAIDWL-SELLTKRDQWQLALF 200


>gi|32477472|ref|NP_870466.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
 gi|32448023|emb|CAD77543.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
          Length = 787

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 40/154 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T ++            + A  GSGKT ++  R+  +L +   P  +  LT T  AA EM 
Sbjct: 9   TAAQAEAVQHIDGPLLIIAGPGSGKTRVVTHRIAYMLQSGIRPWQIAALTFTNKAADEMR 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV                                         +L     + + T H F
Sbjct: 69  SRV----------------------------------------NLLAPNQPVWMGTFHRF 88

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           C   ++++     +  +++I D   SK  ++ A 
Sbjct: 89  CAQQLRRYAPMVGLAENYSIYDSSDSKSAMKRAI 122


>gi|294660411|ref|NP_853162.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)]
 gi|284812070|gb|AAP56730.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)]
 gi|284930644|gb|ADC30583.1| DNA helicase II [Mycoplasma gallisepticum str. R(high)]
          Length = 751

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 44/203 (21%)

Query: 15  DLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
           D +     +Q  + +      +V A AG+GKT +L  R+  L+     P   +L +T T 
Sbjct: 3   DYLKSLNKQQYDVVTSDLIPIFVVAGAGTGKTKVLTSRIAYLIEHFKIPEYKILAITFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HR+ +++                                            + 
Sbjct: 63  KAAKEMQHRLEKLLNKEKT--------------------------------------QVS 84

Query: 133 VQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            +T H FC  ++++     + +   F I DE    KLIE+  KS           + KK 
Sbjct: 85  FRTFHGFCAQVLREEVNNVDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDFKK- 143

Query: 192 FYEILEISNDEDIETL-ISDIIS 213
             +++ I ND     L +++ ++
Sbjct: 144 -NKVMSIINDAKTYNLDVAEFLA 165


>gi|171912577|ref|ZP_02928047.1| probable helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 1067

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 19/169 (11%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           ++  + A+AG+GKTH LVQR L LL   A P  +  +T T+ AA E   R+L+ +   S 
Sbjct: 5   KNELIRASAGTGKTHSLVQRYLWLLEHGAEPERIAAMTFTRKAAGEFFERILQELATRSM 64

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            +   L                      LL  ++     L++ TI +F   + Q  P E 
Sbjct: 65  KAGGGLPL-------------------TLLRKVVRRMDQLRLGTIDSFFATMTQCLPFEL 105

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            +T   A+  E ++ +  EE   S L +I   N+        E  + ++
Sbjct: 106 GLTGKAALMSEAEATRAEEEVMDSLLLAIGRMNDAAALDELREAWKAAS 154


>gi|284931444|gb|ADC31382.1| DNA helicase II [Mycoplasma gallisepticum str. F]
          Length = 751

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 71/196 (36%), Gaps = 43/196 (21%)

Query: 15  DLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
           D +     +Q  + +      +V A AG+GKT +L  R+  L+     P   +L +T T 
Sbjct: 3   DYLKSLNKQQYDVVTSDLIPIFVVAGAGTGKTKVLTSRIAYLIEHFKIPEYKILAITFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM HR+ +++                          D  K +              
Sbjct: 63  KAAKEMQHRLEKLL--------------------------DKEKTQVSFR---------- 86

Query: 133 VQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
             T H FC  ++++     + +   F I DE    KLIE+  KS           + KK 
Sbjct: 87  --TFHGFCAQVLREEVNNVDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDFKK- 143

Query: 192 FYEILEISNDEDIETL 207
             +++ I ND     L
Sbjct: 144 -NKVMSIINDAKTYNL 158


>gi|114769364|ref|ZP_01446990.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255]
 gi|114550281|gb|EAU53162.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255]
          Length = 800

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 39/151 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
            +    S Q  A +       + A AG+GKT  L  R++ L+ +  A P+ +L +T T  
Sbjct: 30  YLEDLNSAQRSAVETLNGPVLMLAGAGTGKTKALTTRIVHLMNMNQAWPNEILAVTFTNK 89

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++                                              +
Sbjct: 90  AAREMKSRVGAMLGNVGDGLP-------------------------------------WL 112

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
            T H+ C  I+++      + S+F I D + 
Sbjct: 113 GTFHSLCVKILRRHSEIVGLKSNFTILDTDD 143


>gi|317494805|ref|ZP_07953216.1| ATP-dependent DNA helicase Rep [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917130|gb|EFV38478.1| ATP-dependent DNA helicase Rep [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 674

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D++    L+ +  +  L      + + LK+    I    ND
Sbjct: 90  EIIKREYKALGMKANFSLFDDQDQLALLTDLTEQWLEK----DKDLLKQLISTISNWKND 145

Query: 202 E-DIETLISDIISNRTAL 218
             D +   +   S R  +
Sbjct: 146 LIDPQQAATHAFSERDKI 163


>gi|90580937|ref|ZP_01236738.1| putative exodeoxyribonuclease V [Vibrio angustum S14]
 gi|90437815|gb|EAS63005.1| putative exodeoxyribonuclease V [Vibrio angustum S14]
          Length = 1203

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 15/166 (9%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLC 67
           +QT   Q +A     +  + A+AG+GKT  +V   LRLLL +               +L 
Sbjct: 5   TQTNILQPMAFPLHGTRLIEASAGTGKTFTIVSLYLRLLLGHGNDDCAHLKPLDVDQILV 64

Query: 68  LTHTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +T T+AA AE+  R+ + I     S    E +      I     +  D   A  +L    
Sbjct: 65  VTFTEAATAELRDRIRKGIRDAYVSFSRGESVGPFKDTISALLNDIHDHKYAARVLKDAE 124

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169
                  V TIH FC+ ++ Q   E+     + F + DE Q K L+
Sbjct: 125 RRMDEASVYTIHGFCQRMLTQNAFESGCRFNNEF-VTDESQLKNLV 169


>gi|312884293|ref|ZP_07744002.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368066|gb|EFP95609.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 1204

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 13/161 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHR 81
            S  + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R
Sbjct: 20  GSRLIEASAGTGKTFTIAGLYLRLLLGHGSSSTRHASPLTVDQILVVTFTEAATAELKDR 79

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   I + + L+     ++   I     +  D   A  +L+          + TIH FC+
Sbjct: 80  IRSRIHS-ARLAFSRGESDDPVIAPLLTDIQDHQAASEILLQAERQIDEAAIFTIHGFCQ 138

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            +++Q   E+   S F         ++  +           
Sbjct: 139 RVLKQNAFESG--SRFQNEFITDETRIKAQVVADYWRQHFY 177


>gi|331644512|ref|ZP_08345632.1| ATP-dependent DNA helicase Rep [Escherichia coli H736]
 gi|331036184|gb|EGI08419.1| ATP-dependent DNA helicase Rep [Escherichia coli H736]
          Length = 690

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 24  QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 83

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 84  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 106

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 107 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 162

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 163 LKTPSQAAASAIGERDRI 180


>gi|296269401|ref|YP_003652033.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296092188|gb|ADG88140.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1089

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 55/212 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            +D +   +      +D      + A  G+GKT  L  R+  L+      P   L +T T
Sbjct: 494 LLDGLDPDQRAAAEITD--GPLLIIAGPGTGKTRTLTHRIAHLVTGRGVPPEQCLAITFT 551

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM  R+  ++                                       +    +
Sbjct: 552 RRAAEEMRERLTALVP--------------------------------------DQAPRV 573

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIA--------------DEEQSKKLIEEAKKSTL 177
            V T H+    I+++    A ++  F IA              DE+++++L+    +   
Sbjct: 574 TVATFHSLGLQILREQHERAGLSPSFGIADHARQLAVATEVTGDEKEARRLLAALSRHRR 633

Query: 178 ASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
                    E  + + + L   +  D + LI 
Sbjct: 634 TGEGGPEQAEFAERYGKALRGQDLVDFDDLIE 665


>gi|194434624|ref|ZP_03066880.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1012]
 gi|194417143|gb|EDX33256.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1012]
          Length = 690

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 24  QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 83

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 84  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 106

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 107 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 162

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 163 LKTPSQAAASAIGERDRI 180


>gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300074875|gb|ADJ64274.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 707

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 39/171 (22%)

Query: 15  DLISQTKSEQLLASDPTR--------SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           D  ++  ++Q  A +              + A AGSGKT+ L  RV RL+L  A P  +L
Sbjct: 21  DPFARLNAQQREAVEHGGKLPPSQQPPLLIVAGAGSGKTNTLAHRVARLVLEGADPQRIL 80

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            L+ ++ AAA+M  RV ++I                              A+ L +   +
Sbjct: 81  LLSFSRRAAADMGRRVGQVI------------------------------AQVLGLAASD 110

Query: 127 TPGGL-KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           TP  L    T HA    +++++     +   F I D   S+ L+   +   
Sbjct: 111 TPPQLHWSGTFHAIGARLLREYAKVIGLEEDFTIQDRGDSEDLMGLLRHDM 161


>gi|62184654|ref|YP_219439.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3]
 gi|62147721|emb|CAH63465.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3]
          Length = 1045

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 24/205 (11%)

Query: 27  ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80
              P  S     ++ A+AG+GKT  + Q VLR LL  +  H   +L +T T AA  E+  
Sbjct: 6   IFHPQTSIQGKYFLEASAGTGKTFTIEQIVLRALLEGSVSHVENILIVTFTNAATNELKL 65

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ E +          ++     +     +  D+      +   L T   + + TIH FC
Sbjct: 66  RISENLKQAGAQLKSAITDPEQPLPPYLHHPCDVKLLYMQVRNALATIDRMAIFTIHGFC 125

Query: 141 EAIMQQFPLEANITSHFAIADEEQS------KKLIEEAKKSTLASIMLDNNEELKKAFYE 194
             ++QQ   E  I+   +     Q+      K L ++  ++ L            + FY 
Sbjct: 126 NYVLQQHFPEIQISQKNSALTHSQAVLHHIRKYLSQDLWENIL----------FPEQFYL 175

Query: 195 ILEISNDEDIET--LISDIISNRTA 217
           +    N     T  L   ++S+ TA
Sbjct: 176 LAARYNSHGKHTSFLTDKLLSSYTA 200


>gi|150377933|ref|YP_001314528.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
 gi|150032480|gb|ABR64595.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
          Length = 689

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 35/173 (20%)

Query: 10  HSETIDLISQTKSEQLL------ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +   ++ ++  + E +       +S+      + A AGSGKT+ L  RV  L++  A P 
Sbjct: 2   NPAYLEKLNDRQREAVEHGIGRPSSEIGGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPR 61

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T ++ AA EM+ RV  I           +   +T                     
Sbjct: 62  RILLMTFSRRAAYEMTRRVKSICRQVLGNQAAAIGDALT--------------------- 100

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                      T H     +++ +  +  +   F I D E +  L+   +   
Sbjct: 101 --------WAGTFHGIGARLLRIYAEQIGVNVDFTIHDREDAADLMNLIRHEL 145


>gi|330807373|ref|YP_004351835.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375481|gb|AEA66831.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1229

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 14/166 (8%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74
            LA     S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA
Sbjct: 8   ALAFPLHGSQLIEASAGTGKTFTISALYLRLVLGHGGSASGFGRELLPPQILVVTFTDAA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLK 132
             E+  R+   +   +    + + A  + I   +   N        + L    +      
Sbjct: 68  TKELRERIRTRLAEAARFFRDEIPAPDSLIVALRDEFNADQWPGCANRLDIAAQWMDEAA 127

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           V TIH++C+ ++++   ++   S F    E    +L+ E  +    
Sbjct: 128 VSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSELLGEVLRDYWR 171


>gi|330503685|ref|YP_004380554.1| DNA helicase/exodeoxyribonuclease V subunit beta [Pseudomonas
           mendocina NK-01]
 gi|328917971|gb|AEB58802.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
           mendocina NK-01]
          Length = 1209

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSRLIEASAGTGKTFTISALYLRLILGHGGDAAFCEALLPPQILVVTFTDAATRELRDRI 74

Query: 83  LEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              +   + +   +    ++ +       ++   +    L    +      V TIH +C+
Sbjct: 75  RARLVEAATVFRGDAQGDDLLRELRGDFAQTQWDECARRLELAAQWMDEAAVSTIHGWCQ 134

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            ++++   ++   S F+   E    +L+ E  +     
Sbjct: 135 RMLREHAFDSG--SLFSQTLETDHSELLAEVVRDYWRQ 170


>gi|206890945|ref|YP_002248960.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742883|gb|ACI21940.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 1015

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITAW 89
             + A+AGSGKT  L +R +  LL++  P+     +L +T +  A+ EM  R++E +   
Sbjct: 13  IILKASAGSGKTTALTERFVYFLLSDDIPNNSLKNILAITFSNNASYEMKDRIIEWLKNL 72

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
               +  L+  ++++    P +  + KA  +L  IL      +V+TI +F  ++ +   +
Sbjct: 73  YCKEENSLN-RLSELLSLSPEELSL-KAGQILDEILNNYSDFQVKTIDSFMTSVFKASAI 130

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           + +    F I    QS  L++ +    L  I  + N      F ++++I +
Sbjct: 131 DFDYNPDFEILMNNQS--LMQYSYDLFLKDI--EENSIKADFFEKVIKIIS 177


>gi|167753572|ref|ZP_02425699.1| hypothetical protein ALIPUT_01849 [Alistipes putredinis DSM 17216]
 gi|167658197|gb|EDS02327.1| hypothetical protein ALIPUT_01849 [Alistipes putredinis DSM 17216]
          Length = 1053

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 6/183 (3%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90
           R+  ++A+AGSGKT+ L  + +R ++        +L +T T  A  EM  R+L  I   +
Sbjct: 2   RARILNASAGSGKTYQLAYKYVRDVVEQPTLYRHILAVTFTNKATEEMRSRILSEIHTLA 61

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                   A +         ++  ++AR     IL       + TI  F + I++ F  E
Sbjct: 62  SGGKSGYLASLCAELSLD-ERTVRTRAREARTRILHDYSRFTILTIDTFFQRILRAFIQE 120

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFYEILEISNDEDIETLI 208
             +  ++ +  E ++  ++ ++  + +  I +D      L     E +E     D+   I
Sbjct: 121 LGLDLNYNV--EIETASVLSKSADALVEQIRIDEELQRWLTAFVQERIEDGKRWDVREGI 178

Query: 209 SDI 211
             +
Sbjct: 179 LAL 181


>gi|260911842|ref|ZP_05918409.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634053|gb|EEX52176.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 1074

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 4/145 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSHLSDE 95
           A+AGSGKT  L    +++LL N H    +L +T T  A  EM  R+L  +   W  L   
Sbjct: 10  ASAGSGKTFTLAVNYIKILLRNPHSYRNILAVTFTNKATEEMKLRILSQLYGIWKLLPSS 69

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               +    +     +    +A   L  +L      +V+TI  F +A+++    E ++T+
Sbjct: 70  KGYLDKVTSELDITPEYASQQAGAALSNLLHNYNYFRVETIDTFFQAVLRNLARELDLTA 129

Query: 156 HFAIADEEQSKKLIEEAKKSTLASI 180
           +  +   +   +  ++A    +  +
Sbjct: 130 NLHVGLNDSQVE--QQAVDKLIEEL 152


>gi|50365383|ref|YP_053808.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum
           L1]
 gi|50363939|gb|AAT75924.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum
           L1]
          Length = 723

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 51/206 (24%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83
              +   +   + A AGSGKT ++  ++  L+      P  +L +T T  AA EM  RV 
Sbjct: 14  AAVTITDKPLRIVAGAGSGKTKVITTKIAYLIEELKMAPYKILAVTFTNKAAREMRDRVT 73

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +II                                              + T HA+C  +
Sbjct: 74  KIIPDLKSNP--------------------------------------HISTFHAWCSRV 95

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201
           +++      +  +F I D+     ++        + +        KK  Y I    ND  
Sbjct: 96  LREDFELVGLNKNFLIIDQGDQIAILRSLINEHFSHLPELKKYTEKKIIYRIGNWKNDLT 155

Query: 202 ----------EDIETLISDIISNRTA 217
                       IE  I+ +      
Sbjct: 156 SPLEATEECYSGIERAIATLYQKYED 181


>gi|242237657|ref|YP_002985838.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech703]
 gi|242129714|gb|ACS84016.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech703]
          Length = 674

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 43/201 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      +    V A AGSGKT ++ Q++  L+         +  +T T  AA EM
Sbjct: 4   NASQQHAVESVSGPCLVLAGAGSGKTRVITQKIAYLIRTCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKETR-------------------------------------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  L   + S+F++ D++    L++E  +  L     ++ + L++    I   
Sbjct: 87  LGLEIIKREYLALGMKSNFSLFDDQDQLALLKELTEQWLQ----NDKDLLQQLISAISNW 142

Query: 199 SNDE-DIETLISDIISNRTAL 218
            ND    E  +    S R  L
Sbjct: 143 KNDLMGPEQAMGMARSERDRL 163


>gi|323964026|gb|EGB59516.1| ATP-dependent DNA helicase Rep [Escherichia coli M863]
 gi|327250630|gb|EGE62336.1| ATP-dependent DNA helicase Rep [Escherichia coli STEC_7v]
          Length = 673

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++ +  R  +
Sbjct: 146 LKTPAQAAAEAMGERDRI 163


>gi|302869750|ref|YP_003838387.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572609|gb|ADL48811.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1134

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 49/255 (19%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L + T+ +  + + P     V A AGSGKT  +  RV+ L+  +   P  +L 
Sbjct: 29  ELARLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVMWLVANSYVRPEHILG 88

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA E++HRV   +                  QG+ P+   ++            
Sbjct: 89  LTFTRKAAGELAHRVRTRLDQLIRRLGR---------QGRDPHDDPLA------------ 127

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST----------- 176
            G   V T H++   I+ +  L A       +  E    +L++   ++            
Sbjct: 128 -GEPTVSTYHSYAGRIVTEHGLRAGYEPTTRLLTEASRWQLVDLLVRNYDGDMSEVDRMP 186

Query: 177 -------------LASIMLDNNE--ELKKAFYEILEISNDEDIETLISDIISNRTALKLI 221
                        L   ++D +E       F+  ++         +   +   RT LKL+
Sbjct: 187 STITDAVLALAGELDEHLVDPDELAAWTGRFFADVQSRPGRVYADVRKALQLQRTRLKLL 246

Query: 222 FFFFSYLWRRKIIEK 236
               +Y  R+   E 
Sbjct: 247 PLVRAYARRKDDFEA 261


>gi|91793704|ref|YP_563355.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans
           OS217]
 gi|91715706|gb|ABE55632.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans
           OS217]
          Length = 1355

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEII 86
            S+ + A+AG+GKT+ +    LRLLL +          +L +T T AA  E+  R+ + I
Sbjct: 46  GSSLIEASAGTGKTYTISGLYLRLLLGHGELPPLSCEQILVVTFTNAATQELRDRIRKRI 105

Query: 87  T-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
             A+       +  E      +   +S+   A   L   L++     + TIH FC+ I+ 
Sbjct: 106 QVAFKCFLGVAVEDEFVNALKQAFPESERQIALKRLDLALKSLDEAAIFTIHGFCQRILA 165

Query: 146 QFPLEANI--TSHFAIADEE 163
               E+++   S F + D E
Sbjct: 166 DLAFESSLLFESEFTLDDSE 185


>gi|313847563|emb|CBY16551.1| putative UvrD/REP helicase [Chlamydophila psittaci RD1]
 gi|325507206|gb|ADZ18844.1| exodeoxyribonuclease V subunit beta [Chlamydophila psittaci 6BC]
 gi|328914196|gb|AEB55029.1| exodeoxyribonuclease V, beta subunit [Chlamydophila psittaci 6BC]
          Length = 1045

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 27  ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80
              P  S     ++ A+AG+GKT  + Q VLR LL  +  H   +L +T T AA  E+  
Sbjct: 6   IFHPETSIQGKYFLEASAGTGKTFTIEQIVLRALLEGSVSHVENILVVTFTNAATNELKL 65

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ E +   +      ++     +        D+ +    +   L +   + + TIH FC
Sbjct: 66  RIQENLKQAASQLKSAITNPEHPLPPYLSPPCDVKQLYMQVRNALASIDRMAIFTIHGFC 125

Query: 141 EAIMQQFPLEANITS 155
             ++QQ   E  I+ 
Sbjct: 126 NYVLQQHFPEMQISQ 140


>gi|328953552|ref|YP_004370886.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
 gi|328453876|gb|AEB09705.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
          Length = 652

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 62/197 (31%), Gaps = 40/197 (20%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID   +    Q  A         V A AGSGKT  LV R+  L+     P  +L LT T+
Sbjct: 13  IDYQHELNPAQYEAVTLTEGPVLVIAGAGSGKTRTLVYRLAYLVEHGIPPWNILLLTFTR 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+ EM HR                                   A  L+   L    G  
Sbjct: 73  KASQEMLHR-----------------------------------ASQLINRPLHQVSG-- 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T HA C   ++++         F + D      L+   +      +        +   
Sbjct: 96  -GTFHAVCHGWLRRYGARIGYDCGFTLLDRHDQGDLVRLLRDRLELKVSPGQFPRRQTIV 154

Query: 193 YEILEISN-DEDIETLI 208
                + N + D+ETL+
Sbjct: 155 EIFGALVNKNLDLETLL 171


>gi|298252946|ref|ZP_06976740.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis 5-1]
 gi|297533310|gb|EFH72194.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis 5-1]
          Length = 1401

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 76/197 (38%), Gaps = 36/197 (18%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +      P  ++  + A AGSGKT+ + +RV+ L+     P ++L LT T  AA+
Sbjct: 14  TDSAEQAAAIQAPTNKNMIIVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAAS 73

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV + ++  S   +++++   +                              V T 
Sbjct: 74  ELLARVAQAVSQHSSEINKLINNGNSASSSGFLKPE--------------------VMTY 113

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF ++I++Q+ L      +     +  +++LI+                          
Sbjct: 114 DAFFQSIVRQYGLLVGFDQNTQPLSDAGARELIKPLVNDY---------------VTNHA 158

Query: 197 EISNDEDIETLISDIIS 213
           E+ +    + LI D+++
Sbjct: 159 EVLSWYSFDALIDDVLA 175


>gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 862

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 40/185 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM
Sbjct: 4   NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++ + +   +                                      + T H+
Sbjct: 64  KDRIQSLVGSPAKAVE--------------------------------------ISTFHS 85

Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  ++QQ       + +   I DEE  K+L E  +   L  +   N   + K +  +  
Sbjct: 86  FCFFVLQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANIIGMVKEYRSLYG 145

Query: 198 ISNDE 202
             +D+
Sbjct: 146 FYSDD 150


>gi|313500580|gb|ADR61946.1| RecB [Pseudomonas putida BIRD-1]
          Length = 874

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 13/159 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 15  GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATKELRERI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140
              +   +      L      +   + +  +    +    L   ++      V TIH +C
Sbjct: 75  RARLAEAARFFRGELEGADPLLHQLRDDYPQETWPRCAGRLEIAVQWMDEAAVSTIHGWC 134

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           + ++++   ++   S F    E    +L+ +  +     
Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171


>gi|293393861|ref|ZP_06638168.1| ATP-dependent DNA helicase Rep [Serratia odorifera DSM 4582]
 gi|291423688|gb|EFE96910.1| ATP-dependent DNA helicase Rep [Serratia odorifera DSM 4582]
          Length = 674

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIHHCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D+     L++E  K  L     ++   L +    I   
Sbjct: 87  LGLDIIKREYKALGMKSNFSLFDDRDQLALLKELTKQWLE----EDKTLLAQLITTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|315503768|ref|YP_004082655.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410387|gb|ADU08504.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1134

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 49/255 (19%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L + T+ +  + + P     V A AGSGKT  +  RV+ L+  +   P  +L 
Sbjct: 29  ELARLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVMWLVANSYVRPEHILG 88

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA E++HRV   +                  QG+ P+   ++            
Sbjct: 89  LTFTRKAAGELAHRVRTRLDQLIRRLGR---------QGRDPHDDPLA------------ 127

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST----------- 176
            G   V T H++   I+ +  L A       +  E    +L++   ++            
Sbjct: 128 -GEPTVSTYHSYAGRIVTEHGLRAGYEPTTRLLTEASRWQLVDLLVRNYDGDMSEVDRMP 186

Query: 177 -------------LASIMLDNNE--ELKKAFYEILEISNDEDIETLISDIISNRTALKLI 221
                        L   ++D +E       F+  ++         +   +   RT LKL+
Sbjct: 187 STITDAVLALAGELDEHLVDPDELAAWTGRFFADVQSRPGRVYADVRKALQLQRTRLKLL 246

Query: 222 FFFFSYLWRRKIIEK 236
               +Y  R+   E 
Sbjct: 247 PLVRAYARRKDDFEA 261


>gi|124026183|ref|YP_001015299.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. NATL1A]
 gi|123961251|gb|ABM76034.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           NATL1A]
          Length = 1261

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 34/240 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI----ITAW 89
            + A+AG+GKT  L   VLRLL       + +L ++ T+A A+E+  R++E     +   
Sbjct: 20  LIEASAGTGKTFSLSHLVLRLLTEKEYSINEILVVSFTEATASEIKARIIERLILALKII 79

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARH-----LLITILETPGGLKVQTIHAFCEAIM 144
             ++  +   +I  +  +  + +  SK R      LL+  LE      + TIH FC   +
Sbjct: 80  ESINTTVKPHKIDNVLNEWVDLNITSKERALYIASLLLEALERIDNADITTIHGFCSKTL 139

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD-NNEELKKAFY---------- 193
           ++  +E     + +I  E+ S  LI E  +      +L+    ELK  F           
Sbjct: 140 RRESIENGNNLNPSI--EKDSNSLINEIVEEYWKKEILEIEISELKGLFKSNFNRKNLIE 197

Query: 194 -----------EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
                         +  ND  IE  +S+ ++N +    I F   +  + + +E S   IA
Sbjct: 198 VLSSLDNDPNNSFKQTFNDLKIEESLSNQLNNYSESLWIKFTTLWEEKGQELEDSFREIA 257


>gi|117920689|ref|YP_869881.1| exodeoxyribonuclease V subunit beta [Shewanella sp. ANA-3]
 gi|117613021|gb|ABK48475.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. ANA-3]
          Length = 1263

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 15/216 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT+ +    LRLLL +    P     +L +T T AA  E+  R+   
Sbjct: 18  GGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVVTFTNAATEELRDRIRRR 77

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       ++    +    K  +++ + A       L++     + TIH FC+ I+
Sbjct: 78  IQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 137

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
                E+++   S F + D E     +  A +           E L +      E  + +
Sbjct: 138 ADLAFESSLLFESDFTLDDSE----FLHHAVRDFWREACYPLPEYLAQIIAS--EFGDPD 191

Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            +   +  ++    A K +     +    + + +S+
Sbjct: 192 GLVKQLRALLGASEA-KPLKPVQPFARLAESLSQSV 226


>gi|152968347|ref|YP_001364131.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151362864|gb|ABS05867.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1123

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAA 76
              +   + +    + +V A AG+GKT  LV RV+ ++      H   L  +T T+ AA+
Sbjct: 7   DQSARDRVRTSHAETLFVEAGAGTGKTTALVARVVHMVATGHLQHVGELAAITFTENAAS 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ E +   +       + E  +              R    T         + T+
Sbjct: 67  ELRSRIREGLEDAARGEHRGTTYEPQE--------------RDCCRTAAAALDDAAIGTL 112

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           H     I+Q+ PLEA +   FA+A      +L ++A +  LA ++ D 
Sbjct: 113 HGTAIRILQEAPLEAGLPPGFAVASATGGDELDDDAWEDFLADLLADP 160


>gi|113970112|ref|YP_733905.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-4]
 gi|113884796|gb|ABI38848.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-4]
          Length = 1274

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 85/216 (39%), Gaps = 15/216 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT+ +    LRLLL +      +   +L +T T AA  E+  R+   
Sbjct: 18  GGSRLIEASAGTGKTYTISGLYLRLLLGDGLSESLNCEQILVVTFTNAATEELRDRIRRR 77

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       ++    +    K  +++ + A       L++     + TIH FC+ I+
Sbjct: 78  IQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 137

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
                E+++   S F + D E     +  A +           E L +      E  + +
Sbjct: 138 ADLAFESSLLFESDFTLDDSE----FLHHAVRDFWREACYPLPEYLAQIIAS--EFGDPD 191

Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            +   +  ++    A K +     +    + + +S+
Sbjct: 192 GLVKQLRALLGASEA-KPLKPVQPFARLAESLSQSV 226


>gi|253701545|ref|YP_003022734.1| UvrD/REP helicase [Geobacter sp. M21]
 gi|251776395|gb|ACT18976.1| UvrD/REP helicase [Geobacter sp. M21]
          Length = 678

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +DL      +            V A AGSGKT ++  R+  L+L     P  +L +T T
Sbjct: 1   MLDLSRLNPEQLAAVKHTEGPLLVLAGAGSGKTGVITYRIAHLVLDKKVPPDQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                       +   G+
Sbjct: 61  NKAAKEMKERVEHLVGR-------------------------------------KQSKGI 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    ++++         +F+I        L+ +  +  
Sbjct: 84  VLSTFHSLGVRVLKRDIERLGYKKNFSIYSTADQVGLVRQIVREV 128


>gi|114047350|ref|YP_737900.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-7]
 gi|113888792|gb|ABI42843.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-7]
          Length = 1269

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 15/216 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT+ +    LRLLL +    P     +L +T T AA  E+  R+   
Sbjct: 18  GGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVVTFTNAATEELRDRIRRR 77

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       ++    +    K  +++ + A       L++     + TIH FC+ I+
Sbjct: 78  IQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 137

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
                E+++   S F + D E     +  A +           E L +      E  + +
Sbjct: 138 ADLAFESSLLFESDFTLDDSE----FLHHAVRDFWREACYPLPEYLAQIIAS--EFGDPD 191

Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            +   +  ++    A K +     +    + + +S+
Sbjct: 192 GLVKQLRALLGASEA-KPLQPVQPFARLAESLSQSV 226


>gi|332173435|gb|AEE22689.1| exodeoxyribonuclease V, beta subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1315

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            + A+AG+GKT+ +V   LRLLL +         +L +T T AA AE+  R+ + +   +
Sbjct: 16  LIEASAGTGKTYTIVNLYLRLLLGDECTPLSVDKILVVTFTNAATAELKQRIRQRLQR-A 74

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           +       ++    Q       ++    H L+  ++      V TIH FC+ ++     E
Sbjct: 75  YFDFYAHKSDDEFTQYLIDRSENIELDCHRLLLAIKQMDDASVFTIHGFCQRMLSLHAFE 134

Query: 151 ANITSHFA-IADEEQSKKL 168
           +      + + DE Q  KL
Sbjct: 135 SGAMYEQSLVLDESQWLKL 153


>gi|330880227|gb|EGH14376.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 1230

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + +SA  ++     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEISAPDDLISELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|88860009|ref|ZP_01134648.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas
           tunicata D2]
 gi|88818003|gb|EAR27819.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Pseudoalteromonas
           tunicata D2]
          Length = 1183

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 18/218 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA---------NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LR LL                +L +T T+AA AE+  RV + 
Sbjct: 16  LIEASAGTGKTYTITALYLRHLLGLQVAGQTGVPLTVEQILVVTFTEAATAEIKDRVRKR 75

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I   +  +      +   +Q      S+   A  LL    ++     + TIH FC+ +++
Sbjct: 76  I-ILARDALMGGDCDDAVVQAILSEVSETKMAFALLDAAAKSMDDAAIFTIHGFCQRMLK 134

Query: 146 QFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           Q   E+ +  +   I D+ +   L+ EA K    + +    +E       +      E +
Sbjct: 135 QHAFESGVAFNLTFIMDQSE---LLTEALKDYWRTFVYGLTKERTAHV--LAYFPAPERL 189

Query: 205 ETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              ++ ++S   A          +W+    E+ L  +A
Sbjct: 190 YKKVAALLSRSGAKIQPQINLDEVWQ--WQEQYLSLLA 225


>gi|87302318|ref|ZP_01085143.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701]
 gi|87283243|gb|EAQ75199.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701]
          Length = 1285

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 12/162 (7%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           DP     + A+AG+GKT  L   VLRL+         LL +T TKAAAAE+  R+   + 
Sbjct: 15  DPGVH-LIEASAGTGKTFTLAHLVLRLVGERQLSLRALLVVTFTKAAAAELRDRIGRRLQ 73

Query: 88  AWSH-------LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                         E L  E+ +  G  P   +  + R  L+  LE      + TIH FC
Sbjct: 74  QAQQLLQTPDPAGHEGLDQELKEWLGNIP-PQNYERLRAQLLLALEELDAADITTIHGFC 132

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
              +Q+  LEA +     +  +     L E+         +L
Sbjct: 133 HRSLQRQALEAGLAP--EVELDNDGALLQEQVVHDYWQQQVL 172


>gi|283783598|ref|YP_003374352.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
 gi|283441008|gb|ADB13474.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
          Length = 1397

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 76/197 (38%), Gaps = 36/197 (18%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +      P  ++  + A AGSGKT+ + +RV+ L+     P ++L LT T  AA+
Sbjct: 14  TDSAEQAAAIQAPTNKNMIIVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAAS 73

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV + ++  S   +++++   +                              V T 
Sbjct: 74  ELLARVAQAVSQHSSEINKLINNGNSASSSGFLKPE--------------------VMTY 113

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF ++I++Q+ L      +     +  +++LI+                          
Sbjct: 114 DAFFQSIVRQYGLLVGFDQNTQPLSDAGARELIKPLVNDY---------------VTNHA 158

Query: 197 EISNDEDIETLISDIIS 213
           E+ +    + LI D+++
Sbjct: 159 EVLSWYSFDALIDDVLA 175


>gi|110807532|ref|YP_691052.1| ATP-dependent DNA helicase Rep [Shigella flexneri 5 str. 8401]
 gi|110617080|gb|ABF05747.1| ATP-dependent DNA helicase rep [Shigella flexneri 5 str. 8401]
          Length = 678

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 12  QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                                           GL + T H    
Sbjct: 72  VGQTLGRKE-------------------------------------AHGLMISTFHTLGL 94

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +A    D+   L++    I    ND
Sbjct: 95  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIA----DDKVLLQQLISTISNWKND 150

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 151 LKTPSQAAASAIGERDRI 168


>gi|72382484|ref|YP_291839.1| DNA helicase/exodeoxyribonuclease V subunit beta [Prochlorococcus
           marinus str. NATL2A]
 gi|72002334|gb|AAZ58136.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus
           marinus str. NATL2A]
          Length = 1261

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 34/240 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII----TAW 89
            + A+AG+GKT  L   VLRLL       + +L ++ T+A A+E+  R++E +       
Sbjct: 20  LIEASAGTGKTFSLSHLVLRLLTEKEYSINEILVVSFTEATASEIKARIIERLILALKII 79

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHL-----LITILETPGGLKVQTIHAFCEAIM 144
             ++  +   +I  +  +  + +  SK + L     L+  LE      + TIH FC   +
Sbjct: 80  ESINTNVKPYKIDNVLNEWVDLNITSKEKALYIASLLLEALERIDNADITTIHGFCSKTL 139

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD-NNEELKKAFY---------- 193
           ++  +E     +  I  E+ S  LI E  +      +L+    ELK  F           
Sbjct: 140 RREAIENGNNLNPTI--EKDSYSLINEIVEEYWKKEILEIEISELKGLFKSNFNRKNLID 197

Query: 194 -----------EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
                         +  ND  IE  +S  ++N +    I F   +  + + +E S   IA
Sbjct: 198 VLSSLDNDPNNSFKQTFNDLKIEESLSSQLNNYSESLWIKFTTIWEEKGQELEDSFREIA 257


>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 861

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 50/216 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q +  +  R+  + A+AG+GKT+ L  RV  ++ +       +LC+T T  AA EM
Sbjct: 4   NSEQQRVIDELDRNILLLASAGTGKTNTLAYRVAHIIESGRCEAHQILCMTFTNKAAQEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++   +   +                                      + T H+
Sbjct: 64  KSRIESLVGQPAKAVE--------------------------------------ISTFHS 85

Query: 139 FCEAIM-----QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           FC  ++     +   L  ++     I DEE  K+L    K   +  +   +   + K + 
Sbjct: 86  FCFYVLQQEGKRDESLYTDV----TIFDEEDCKELYLPYKPRNMRDMNFASLISMVKEYR 141

Query: 194 EILEISNDEDIETLISDIIS-NRTALKLIF-FFFSY 227
            + E  ++  I+     I    R   K I   F++Y
Sbjct: 142 SVYEFYSESLIDDYKRTIQRLEREQSKQIEKLFYNY 177


>gi|254292798|ref|YP_003058821.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
 gi|254041329|gb|ACT58124.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
          Length = 793

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 43/192 (22%)

Query: 15  DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           D +    +EQ  A + T  +  V A AG+GKT +L  R+  +L    A  S  L +T T 
Sbjct: 29  DYLDGLNAEQRDAVETTDGALLVLAGAGTGKTRVLTTRLAHILNQRKAWASQTLTVTFTN 88

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R  ++I                                       E      
Sbjct: 89  KAAREMRERAEKLIGD-------------------------------------EAQSLSW 111

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+    I+++      + S+F I D +   +L+++     + +  +D      +  
Sbjct: 112 LGTFHSVSSKILRRHAEIVGLESNFTIIDTDDQLRLLKQ----IIEAENIDTKRWTPRFM 167

Query: 193 YEILEISNDEDI 204
             +++   +  +
Sbjct: 168 AGLIDGWKNRAV 179


>gi|307566117|ref|ZP_07628575.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A]
 gi|307345305|gb|EFN90684.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A]
          Length = 1140

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 6/180 (3%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLE 84
           +A+         A+AGSGKT  L    + +L+      + +L +T T  A +EM  R+L 
Sbjct: 4   IANSNKTLTVYKASAGSGKTFTLTVEFISILVKYPEDYNKMLAVTFTNKATSEMKLRILS 63

Query: 85  IITAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            +    H L+      E  K        +  + A ++L  +       +VQTI AF +A+
Sbjct: 64  QLYGIGHGLASSKSYLEKVKANTALTEATIRNNALYVLEKLTHEYHYFRVQTIDAFFQAV 123

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++    E  +T++  +  +  + ++  +A    + ++    N+ + K   + +  + +ED
Sbjct: 124 LRNLGKELGLTANLRV--DLNTAQVEAKAVDELIDNL--KENDPVLKWIDDYISSNIEED 179


>gi|166154823|ref|YP_001654941.1| DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|166155698|ref|YP_001653953.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301336102|ref|ZP_07224346.1| DNA helicase [Chlamydia trachomatis L2tet1]
 gi|165930811|emb|CAP04309.1| DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|165931686|emb|CAP07263.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 634

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 38/163 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2   LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+        +    +                                    V
Sbjct: 62  AANELKERIQSQCRELGYSDVPM------------------------------------V 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+++     +  S+F I D+  S+KLI++  +  
Sbjct: 86  STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKLIKQCLRKL 128


>gi|331655462|ref|ZP_08356455.1| ATP-dependent DNA helicase Rep [Escherichia coli M718]
 gi|331046783|gb|EGI18867.1| ATP-dependent DNA helicase Rep [Escherichia coli M718]
          Length = 690

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 24  QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 83

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 84  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 106

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 107 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 162

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 163 LKTPAQAAAEAKGERDRI 180


>gi|319788629|ref|YP_004148104.1| exodeoxyribonuclease V subunit beta [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467141|gb|ADV28873.1| exodeoxyribonuclease V, beta subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1205

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS- 93
           + A+AG+GKT  L   V+RL+L  A P   +L +T T+AA  E+  RV + +   + ++ 
Sbjct: 18  IEASAGTGKTFTLATLVVRLVLERALPVERILAVTFTEAATQELRSRVRKRLVLAAEVAA 77

Query: 94  ---------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                    +  L+A++ +       +     AR L     ++     V TIH FC  ++
Sbjct: 78  GTVPADGPGEAQLTAQLLQAHLDASGEEITQVARRL-RLAADSIDQAAVFTIHGFCARVL 136

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           ++  LE+     F   +   +   + EA  + L
Sbjct: 137 REHALESG--QGFDPPELLANDIGLREAVAADL 167


>gi|316933463|ref|YP_004108445.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315601177|gb|ADU43712.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 1133

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 55/191 (28%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +   A+    +  + A  G+GKT  L+ RV  LL     P  +L LT +  AA EM+ R+
Sbjct: 201 QAAAAAHRGEAYLLEAGPGTGKTQTLIARVEGLLEEGIDPRRILLLTFSNKAAGEMAERI 260

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
                                                      E    + + T HAF   
Sbjct: 261 ARKRP--------------------------------------EAAAAMWIGTFHAFGLD 282

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           I+++F  E  ++    + D  ++ +L+EE                       +    N  
Sbjct: 283 IIRRFHAELGLSKDPRMMDRTEAVELLEEEFPRL-----------------RLAHYRNLY 325

Query: 203 DIETLISDIIS 213
           D   +I+D+++
Sbjct: 326 DPTQIIADMLA 336


>gi|189218845|ref|YP_001939486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Methylacidiphilum
           infernorum V4]
 gi|189185703|gb|ACD82888.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Methylacidiphilum
           infernorum V4]
          Length = 1055

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 22/173 (12%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           TR   V A+AG+GKTH LV+R L LLL    P +LL +T T+ A+ E+  R+   +    
Sbjct: 9   TRRLVVVASAGAGKTHQLVERALDLLLEGVAPHSLLIITFTRKASQEIVDRIFSTLAQRV 68

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             S E       K+          S+A   L T++E    L+  TI +F   +++     
Sbjct: 69  LASKE-------KVDPSPEESLLKSRAYRCLQTLIEDLPFLRFGTIDSFLYHLLRY---- 117

Query: 151 ANITSH-------FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
             I          F++ D++  K L +E  +  L +   +       +F    
Sbjct: 118 --IPPDKKPTFAPFSLLDDKGKKSLQQEIVRRILTA--REFESPFLDSFEMFY 166


>gi|118580949|ref|YP_902199.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
 gi|118503659|gb|ABL00142.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
          Length = 672

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 40/161 (24%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           + +   +Q LA         + A AGSGKT ++  R++ L+     P   +L +T T  A
Sbjct: 1   MKKLNPQQFLAVRHTEGPLLILAGAGSGKTQVITTRIVHLIKDRQVPAENILAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  +    S                                       G+ + 
Sbjct: 61  AREMRERVASMAGKSSE--------------------------------------GIIIS 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+    I+++         +F+I        ++ +A + 
Sbjct: 83  TFHSLGVRILRRDIRSLGFKPNFSIYSSSDQAGVLRQAMRE 123


>gi|114331347|ref|YP_747569.1| exodeoxyribonuclease V, beta subunit [Nitrosomonas eutropha C91]
 gi|114308361|gb|ABI59604.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Nitrosomonas
           eutropha C91]
          Length = 1228

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLCLTHTKAAAAEMSH 80
           T S  + A+AG+GKT  +    +RL+L +            P  +L +T T+AA  E+  
Sbjct: 16  TGSHLIEASAGTGKTFTIAMLYVRLILGHQGEFAFSGGALTPPEILVVTFTEAATKELRD 75

Query: 81  RVLEIITAWSHL-------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           R+   +T  + L       +  +   +  +    + + ++ +     L    E      +
Sbjct: 76  RIRARLTEAARLFRADPINAQSLNDTDPLQQLLFEYSPAEWAACARKLELAAEWMDEAAI 135

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            TIH +C  ++++   ++   S F    E    +L  E  +    
Sbjct: 136 STIHGWCNRMLREHAFDSQ--SLFTQELETDQTELRAEVVRDYWR 178


>gi|240256061|ref|NP_194242.6| ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase
           [Arabidopsis thaliana]
          Length = 1149

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 38/160 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           ++S    ++  A S+ +    V A  GSGKT  +V RVL LL     PS +L +T TKAA
Sbjct: 244 MLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKAA 303

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            +EM  R+ +     +                                        + + 
Sbjct: 304 TSEMRERIGKSAGKKAAKD-------------------------------------ITIS 326

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+F   + +    +   TS F++    Q ++ I EA +
Sbjct: 327 TFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAIIEAVR 366


>gi|33240542|ref|NP_875484.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238070|gb|AAQ00137.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 1256

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 10/158 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ L   VLRLL       + +L ++ TKA A+E+  R+   +       
Sbjct: 19  LLEASAGTGKTYSLAHLVLRLLTEKGCPINKILVISFTKATASEIKARISSRLVLALKGL 78

Query: 94  DEILSAEI---------TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           +      +           ++ K  ++S   +   LLI  LE      + TIH FC   +
Sbjct: 79  ESYTPKSLASCTDQVMNEWLESKVIDESTRLQWASLLIKALENIDSADITTIHGFCSRNL 138

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           ++  ++           EE +K+LI E         +L
Sbjct: 139 KREAIDVGNNIETEALSEEDNKELILEIIHEYWREEVL 176


>gi|127513058|ref|YP_001094255.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4]
 gi|126638353|gb|ABO23996.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4]
          Length = 1223

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH--P---STLLCLTHTKAAAAEMSHRVLEIIT-A 88
            + A+AG+GKT+ +    +RLLL ++   P     +L +T T AA  E+  R+ + I  A
Sbjct: 18  LIEASAGTGKTYTIAGLYVRLLLGDSQRAPLSCEQILVVTFTNAATQELRDRIRKKIQLA 77

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           +       +   +      +      S+A   L   L++     + TIH FC+ I+    
Sbjct: 78  YRAFLGMEVDDPLINTLYSEAEPEARSQALKRLDLALKSLDEAAIFTIHGFCQRILSDMA 137

Query: 149 LEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180
            E+++   S F + D E     +  A +      
Sbjct: 138 FESSLLFESEFTLDDSE----YLHHAVRDFWREA 167


>gi|284923883|emb|CBG36982.1| ATP-dependent DNA helicase [Escherichia coli 042]
          Length = 678

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 12  QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 72  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 94

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 95  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 150

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 151 LKTPSQAAASAIGERDRI 168


>gi|262385344|gb|ACY64665.1| SRS2 [Arabidopsis thaliana]
          Length = 1147

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 38/160 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           ++S    ++  A S+ +    V A  GSGKT  +V RVL LL     PS +L +T TKAA
Sbjct: 244 MLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKAA 303

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            +EM  R+ +     +                                        + + 
Sbjct: 304 TSEMRERIGKSAGKKAAKD-------------------------------------ITIS 326

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+F   + +    +   TS F++    Q ++ I EA +
Sbjct: 327 TFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAIIEAVR 366


>gi|218697495|ref|YP_002405162.1| ATP-dependent DNA helicase Rep [Escherichia coli 55989]
 gi|218354227|emb|CAV00880.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli 55989]
          Length = 673

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|323142809|ref|ZP_08077522.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei YIT
           12066]
 gi|322417454|gb|EFY08075.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei YIT
           12066]
          Length = 671

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 39/210 (18%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78
             ++Q   +       V A AGSGKT ++  +++ L+  +  P+  +  +T T  AAAEM
Sbjct: 4   NDAQQQAVTYIDGPCLVLAGAGSGKTRVITAKIVNLITGHKLPAKTVCAVTFTNKAAAEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                       +    + + T H+
Sbjct: 64  RERVAQELGQ-------------------------------------DCAKEIWISTFHS 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I++    +  +  +F + DE    K++ +  +     +MLD   E    F  + +I
Sbjct: 87  LGLGILRIEHNKVGLKRNFTLFDESDQFKIVRDLIREKY-PLMLDGKAERDCIFDALQQI 145

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYL 228
           S  +       DI    T   L   + +YL
Sbjct: 146 SLWKGELRAPQDITPKTTLSSLYEEYQTYL 175


>gi|68171270|ref|ZP_00544672.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657941|ref|YP_507655.1| UvrD/Rep family helicase [Ehrlichia chaffeensis str. Arkansas]
 gi|67999317|gb|EAM85964.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599398|gb|ABD44867.1| helicase, UvrD/Rep family [Ehrlichia chaffeensis str. Arkansas]
          Length = 639

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 42/164 (25%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D I+    +Q  A  +      + A AG+GKT  +  R+  ++  N A PS +L +T T 
Sbjct: 3   DYITSLNEDQREAVININGPILILAGAGTGKTRTITSRIAYIINNNFALPSQILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ E+   ++                                        + 
Sbjct: 63  KAANEMLSRISELTPVYN----------------------------------------IW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T HA    I++Q      + + F I + +   ++I+      
Sbjct: 83  LGTFHAIAAKILRQHAEVVGLKNDFTIINTDDQLQVIKNIVNDM 126


>gi|288942789|ref|YP_003445029.1| exodeoxyribonuclease V subunit beta [Allochromatium vinosum DSM
           180]
 gi|288898161|gb|ADC63997.1| exodeoxyribonuclease V, beta subunit [Allochromatium vinosum DSM
           180]
          Length = 1284

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 17/193 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  L    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 17  GSRLIEASAGTGKTFTLAMLYLRLVLGHGGETAFARQLMPPEILVVTFTNAATEELRDRI 76

Query: 83  LEIITA----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
              +      + + S    S  +      +    D++ +   L    E      + TIHA
Sbjct: 77  RRRLVEASLVFRNQSSPGSSDPLLLDLRDQMAGGDLAHSARRLELAAEWMDEAAISTIHA 136

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           +C  ++++   ++   + F    E    + ++ A +    + +L    E  +   E    
Sbjct: 137 WCYRMLREHAFDS--ANAFEQTLENDDAERLQHAAEDYWRTFLLGLPAERLEPILEQWSQ 194

Query: 199 SND--EDIETLIS 209
            +D  + +  L+S
Sbjct: 195 PSDLAKAVRGLLS 207


>gi|254038990|ref|ZP_04873041.1| ATP-dependent DNA helicase Rep [Escherichia sp. 1_1_43]
 gi|226838681|gb|EEH70709.1| ATP-dependent DNA helicase Rep [Escherichia sp. 1_1_43]
 gi|309704217|emb|CBJ03564.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
 gi|323934169|gb|EGB30600.1| ATP-dependent DNA helicase Rep [Escherichia coli E1520]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|281603168|gb|ADA76152.1| ATP-dependent DNA helicase rep [Shigella flexneri 2002017]
          Length = 678

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 12  QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                                           GL + T H    
Sbjct: 72  VGQTLGRKE-------------------------------------AHGLMISTFHTLGL 94

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 95  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 150

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 151 LKTPSQAAASAIGERDRI 168


>gi|82546132|ref|YP_410079.1| ATP-dependent DNA helicase Rep [Shigella boydii Sb227]
 gi|187733202|ref|YP_001882397.1| ATP-dependent DNA helicase Rep [Shigella boydii CDC 3083-94]
 gi|81247543|gb|ABB68251.1| rep helicase [Shigella boydii Sb227]
 gi|187430194|gb|ACD09468.1| ATP-dependent DNA helicase Rep [Shigella boydii CDC 3083-94]
 gi|320176021|gb|EFW51090.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae CDC 74-1112]
 gi|320185439|gb|EFW60208.1| ATP-dependent DNA helicase Rep [Shigella flexneri CDC 796-83]
 gi|332089063|gb|EGI94174.1| ATP-dependent DNA helicase Rep [Shigella boydii 3594-74]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
 gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
          Length = 862

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 44/212 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM
Sbjct: 4   NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++ + +   +                                      V T H+
Sbjct: 64  KGRIQSLVGSPAKAVE--------------------------------------VSTFHS 85

Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  I+QQ       + +   + DEE  K+L E  +   L  +   N   + K +  +  
Sbjct: 86  FCFFILQQEGKRNETLYTDVTVFDEEDCKELSEPYRPGKLREMSFANVISMVKEYRSLYG 145

Query: 198 ISNDE---DIETLISDI-ISNRTALKLIFFFF 225
             +D+   D +  I  +    R A++ +F  F
Sbjct: 146 FYSDDLVGDYKRTIERLQKEQREAIEQLFSSF 177


>gi|331679887|ref|ZP_08380550.1| ATP-dependent DNA helicase Rep [Escherichia coli H591]
 gi|331072434|gb|EGI43766.1| ATP-dependent DNA helicase Rep [Escherichia coli H591]
          Length = 690

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 24  QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 83

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 84  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 106

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 107 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 162

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 163 LKTPAQAAAEAKGERDRI 180


>gi|295698460|ref|YP_003603115.1| DNA helicase II [Candidatus Riesia pediculicola USDA]
 gi|291157481|gb|ADD79926.1| DNA helicase II [Candidatus Riesia pediculicola USDA]
          Length = 651

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 47/227 (20%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            I+ ++  + E + A     +  V A AGSGKT +LV R++ LL       +++L LT +
Sbjct: 1   MIEKLNSKQKEAVTAPS-EENILVLAGAGSGKTRVLVHRIIWLLKKIRVSSTSILTLTFS 59

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A  E+  RV +II                                            L
Sbjct: 60  NKAVLEIRRRVNDIINLCQE--------------------------------------NL 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H      ++    E N+  +F I D E  K  I +A + +     L++   L + 
Sbjct: 82  IIDTFHGLAYRFLRVHYSEVNLPYNFQILDSEDQKYFIRKAIRDS----QLEHKRGLLQK 137

Query: 192 FYEILEISNDEDIETLISDII-SNRTALKLIFFFFSYLWRRKIIEKS 237
             E +  + ++ I     DI+  NR     + +F  YL  +KI + S
Sbjct: 138 STEYINKNKEKGIRP--KDILKKNRIDSSNMDYFKIYLTYQKICDHS 182


>gi|70734238|ref|YP_257878.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens Pf-5]
 gi|68348537|gb|AAY96143.1| exodeoxyribonuclease V, beta subunit [Pseudomonas fluorescens Pf-5]
          Length = 1230

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 16/167 (9%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74
            LA     S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA
Sbjct: 8   ALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEAAGFGRELLPPQILVVTFTDAA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             E+  R+   +   +    +  SA    I +++ + P +   + A  L I   +     
Sbjct: 68  TKELRERIRTRLAEAARFFRDETSAPDGLIVELREQYPVEQWAACANRLDIAA-QWMDEA 126

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            V TIH++C+ ++++   ++   S F    E     L+ +  +    
Sbjct: 127 AVSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGQVLRDYWR 171


>gi|301021431|ref|ZP_07185455.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 69-1]
 gi|300398067|gb|EFJ81605.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 69-1]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|154244732|ref|YP_001415690.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154158817|gb|ABS66033.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1107

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             V A AG+GKT ++  RV  LL++ A P ++  +T T+ AA+ +  RV   +       
Sbjct: 21  LLVEAAAGTGKTALMAGRVTMLLMSGAEPRSIAAITFTELAASALGARVHRYV------- 73

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D++L+  + K   +          R +L         L   TIHAFC+ I+  + +EA+I
Sbjct: 74  DDLLAGRVPKPLREALPDGLTDAQRRILSEAAGKLDELTATTIHAFCQTIICSYAVEADI 133

Query: 154 TSHFAIAD 161
                I D
Sbjct: 134 DPGARILD 141


>gi|330445114|ref|ZP_08308766.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489305|dbj|GAA03263.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 1210

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 15/166 (9%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLC 67
           +QT   Q +A     +  + A+AG+GKT  +V   LRLLL +               +L 
Sbjct: 5   TQTNILQPMAFPLHGTRLIEASAGTGKTFTIVSLYLRLLLGHGNDDCAHIKPLDVDQILV 64

Query: 68  LTHTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +T T+AA AE+  R+ + I     S    E +      I     +  D   A  +L    
Sbjct: 65  VTFTEAATAELRDRIRKGIRDAYVSFSRGESVGPFKDTISVLLNDIHDHKYAARVLKDAE 124

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169
                  V TIH FC+ ++ Q   E+     + F + DE Q K L+
Sbjct: 125 RRMDEASVYTIHGFCQRMLTQNAFESGCRFNNEF-VTDESQLKSLV 169


>gi|49176407|ref|YP_026251.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89110239|ref|AP_004019.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. W3110]
 gi|170083265|ref|YP_001732585.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238902859|ref|YP_002928655.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli BW2952]
 gi|54041576|sp|P09980|REP_ECOLI RecName: Full=ATP-dependent DNA helicase rep
 gi|48994965|gb|AAT48209.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. MG1655]
 gi|85676270|dbj|BAE77520.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K12 substr. W3110]
 gi|169891100|gb|ACB04807.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238860820|gb|ACR62818.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli BW2952]
 gi|260451377|gb|ACX41799.1| ATP-dependent DNA helicase Rep [Escherichia coli DH1]
 gi|315138356|dbj|BAJ45515.1| ATP-dependent DNA helicase Rep [Escherichia coli DH1]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|3318688|pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX
 gi|3318689|pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX
 gi|148182|gb|AAA67579.1| rep helicase [Escherichia coli str. K-12 substr. MG1655]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|74314292|ref|YP_312711.1| ATP-dependent DNA helicase Rep [Shigella sonnei Ss046]
 gi|157154755|ref|YP_001465258.1| ATP-dependent DNA helicase Rep [Escherichia coli E24377A]
 gi|188492589|ref|ZP_02999859.1| ATP-dependent DNA helicase Rep [Escherichia coli 53638]
 gi|191166128|ref|ZP_03027963.1| ATP-dependent DNA helicase Rep [Escherichia coli B7A]
 gi|194438642|ref|ZP_03070730.1| ATP-dependent DNA helicase Rep [Escherichia coli 101-1]
 gi|218556340|ref|YP_002389254.1| ATP-dependent DNA helicase Rep [Escherichia coli IAI1]
 gi|253775597|ref|YP_003038428.1| ATP-dependent DNA helicase Rep [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163722|ref|YP_003046830.1| ATP-dependent DNA helicase Rep [Escherichia coli B str. REL606]
 gi|293413221|ref|ZP_06655883.1| ATP-dependent DNA helicase Rep [Escherichia coli B354]
 gi|293468096|ref|ZP_06664508.1| ATP-dependent DNA helicase Rep [Escherichia coli B088]
 gi|300921517|ref|ZP_07137861.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 115-1]
 gi|300923277|ref|ZP_07139326.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 182-1]
 gi|300930059|ref|ZP_07145489.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 187-1]
 gi|301303672|ref|ZP_07209793.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 124-1]
 gi|301325467|ref|ZP_07218950.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 78-1]
 gi|307313645|ref|ZP_07593265.1| ATP-dependent DNA helicase Rep [Escherichia coli W]
 gi|309796282|ref|ZP_07690692.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 145-7]
 gi|331649602|ref|ZP_08350684.1| ATP-dependent DNA helicase Rep [Escherichia coli M605]
 gi|331675248|ref|ZP_08375999.1| ATP-dependent DNA helicase Rep [Escherichia coli TA280]
 gi|73857769|gb|AAZ90476.1| rep helicase, a single-stranded DNA dependent ATPase [Shigella
           sonnei Ss046]
 gi|157076785|gb|ABV16493.1| ATP-dependent DNA helicase Rep [Escherichia coli E24377A]
 gi|188487788|gb|EDU62891.1| ATP-dependent DNA helicase Rep [Escherichia coli 53638]
 gi|190903904|gb|EDV63618.1| ATP-dependent DNA helicase Rep [Escherichia coli B7A]
 gi|194422446|gb|EDX38445.1| ATP-dependent DNA helicase Rep [Escherichia coli 101-1]
 gi|218363109|emb|CAR00749.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli IAI1]
 gi|242379311|emb|CAQ34122.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia
           coli BL21(DE3)]
 gi|253326641|gb|ACT31243.1| ATP-dependent DNA helicase Rep [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975623|gb|ACT41294.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli B str. REL606]
 gi|253979779|gb|ACT45449.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli BL21(DE3)]
 gi|291321474|gb|EFE60912.1| ATP-dependent DNA helicase Rep [Escherichia coli B088]
 gi|291468169|gb|EFF10666.1| ATP-dependent DNA helicase Rep [Escherichia coli B354]
 gi|300411585|gb|EFJ94895.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 115-1]
 gi|300420422|gb|EFK03733.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 182-1]
 gi|300462047|gb|EFK25540.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 187-1]
 gi|300840972|gb|EFK68732.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 124-1]
 gi|300847694|gb|EFK75454.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 78-1]
 gi|306906626|gb|EFN37138.1| ATP-dependent DNA helicase Rep [Escherichia coli W]
 gi|308120164|gb|EFO57426.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 145-7]
 gi|315063074|gb|ADT77401.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli W]
 gi|315254141|gb|EFU34109.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 85-1]
 gi|323167632|gb|EFZ53337.1| ATP-dependent DNA helicase Rep [Shigella sonnei 53G]
 gi|323182551|gb|EFZ67955.1| ATP-dependent DNA helicase Rep [Escherichia coli 1357]
 gi|323380863|gb|ADX53131.1| ATP-dependent DNA helicase Rep [Escherichia coli KO11]
 gi|323943819|gb|EGB39914.1| ATP-dependent DNA helicase Rep [Escherichia coli H120]
 gi|323959035|gb|EGB54704.1| ATP-dependent DNA helicase Rep [Escherichia coli H489]
 gi|323969380|gb|EGB64679.1| ATP-dependent DNA helicase Rep [Escherichia coli TA007]
 gi|324115758|gb|EGC09693.1| ATP-dependent DNA helicase Rep [Escherichia coli E1167]
 gi|330908080|gb|EGH36599.1| ATP-dependent DNA helicase Rep [Escherichia coli AA86]
 gi|331041472|gb|EGI13620.1| ATP-dependent DNA helicase Rep [Escherichia coli M605]
 gi|331067534|gb|EGI38938.1| ATP-dependent DNA helicase Rep [Escherichia coli TA280]
 gi|332084707|gb|EGI89895.1| ATP-dependent DNA helicase Rep [Shigella boydii 5216-82]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|300940007|ref|ZP_07154632.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 21-1]
 gi|300455140|gb|EFK18633.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 21-1]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|256021480|ref|ZP_05435345.1| ATP-dependent DNA helicase Rep [Shigella sp. D9]
 gi|332105066|gb|EGJ08412.1| DNA helicase and single-stranded DNA-dependent ATPase [Shigella sp.
           D9]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 872

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 84/199 (42%), Gaps = 40/199 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++  + + L+ ++   +  + A+AG+GKT+ L  R+  ++ +N A  S +LC+T T  A 
Sbjct: 1   MTLNQEQALVVNELENNILLLASAGTGKTNTLSSRISNIIKSNKAKASEILCITFTNKAC 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ +I+   +                                        + ++T
Sbjct: 61  AEMRERIEKIVGEEAK--------------------------------------DITIRT 82

Query: 136 IHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+FC  +++    +  +I + F + DEE S+++I+E      +   L    EL K    
Sbjct: 83  FHSFCYDLIKSDAKKRTDIFTDFIVFDEEDSREIIKECNYYNYSVFKLQQFIELTKIERA 142

Query: 195 ILEISNDEDIETLISDIIS 213
            L+  ++  ++     I +
Sbjct: 143 KLDFYSNNILDDYSKTIAN 161


>gi|78213176|ref|YP_381955.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus
           sp. CC9605]
 gi|78197635|gb|ABB35400.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus
           sp. CC9605]
          Length = 1226

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 19/171 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L    LRL+    HP   LL +T T AAA E+  R+ + +       
Sbjct: 34  LLEASAGTGKTFALAHLCLRLITEADHPLEALLVVTFTDAAAEELRSRIGQRLQQALQGL 93

Query: 94  DEILSAEIT---------KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           +++                + G +P  +     RHLL+  LE      + TIH FC   +
Sbjct: 94  EQLDQGMKAYAPDPVLADWLAGSEPGDARQRWIRHLLV-ALEQLDRADITTIHGFCRRSL 152

Query: 145 QQFPLEANITSHFAIAD---EEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++  L     S+ A  +   +  +  L  E  +      +L    +  KA 
Sbjct: 153 RRLAL-----SNAAAMEPQLDTDATALQAEVVQDLWQQELLSLPPDQFKAL 198


>gi|157163251|ref|YP_001460569.1| ATP-dependent DNA helicase Rep [Escherichia coli HS]
 gi|170022195|ref|YP_001727149.1| ATP-dependent DNA helicase Rep [Escherichia coli ATCC 8739]
 gi|170680827|ref|YP_001746097.1| ATP-dependent DNA helicase Rep [Escherichia coli SMS-3-5]
 gi|256026126|ref|ZP_05439991.1| ATP-dependent DNA helicase Rep [Escherichia sp. 4_1_40B]
 gi|300947366|ref|ZP_07161562.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 116-1]
 gi|300955220|ref|ZP_07167615.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 175-1]
 gi|301028989|ref|ZP_07192146.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 196-1]
 gi|301646157|ref|ZP_07246056.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 146-1]
 gi|307140478|ref|ZP_07499834.1| ATP-dependent DNA helicase Rep [Escherichia coli H736]
 gi|312971940|ref|ZP_07786114.1| ATP-dependent DNA helicase Rep [Escherichia coli 1827-70]
 gi|331665424|ref|ZP_08366323.1| ATP-dependent DNA helicase Rep [Escherichia coli TA143]
 gi|157068931|gb|ABV08186.1| ATP-dependent DNA helicase Rep [Escherichia coli HS]
 gi|169757123|gb|ACA79822.1| ATP-dependent DNA helicase Rep [Escherichia coli ATCC 8739]
 gi|170518545|gb|ACB16723.1| ATP-dependent DNA helicase Rep [Escherichia coli SMS-3-5]
 gi|299878032|gb|EFI86243.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 196-1]
 gi|300317874|gb|EFJ67658.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 175-1]
 gi|300453028|gb|EFK16648.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 116-1]
 gi|301075626|gb|EFK90432.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 146-1]
 gi|310334317|gb|EFQ00522.1| ATP-dependent DNA helicase Rep [Escherichia coli 1827-70]
 gi|315618523|gb|EFU99109.1| ATP-dependent DNA helicase Rep [Escherichia coli 3431]
 gi|323938917|gb|EGB35136.1| ATP-dependent DNA helicase Rep [Escherichia coli E482]
 gi|331057322|gb|EGI29311.1| ATP-dependent DNA helicase Rep [Escherichia coli TA143]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|184200505|ref|YP_001854712.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201]
 gi|183580735|dbj|BAG29206.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201]
          Length = 1145

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S Q+ +E +     T+ +  + + P     V A AGSGKT  +  RV  L+    A P  
Sbjct: 14  SPQDIAEALGDFPPTEQQAEVIASPLTPRLVVAGAGSGKTTTMSDRVTWLVANGLARPEE 73

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T+ AA E+S R+   +    H               ++P   D + A       
Sbjct: 74  ILGVTFTRKAAGELSQRIATKLRMLRHAG-----------LIEEPGGDDDAPA------A 116

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           ++ P    V T H++  ++++ + L   I S   +  + Q+ +L  E  +
Sbjct: 117 VQEP---TVSTYHSYANSLVRSYGLRLGIESDTVLLGQAQAWQLASELVR 163


>gi|30064927|ref|NP_839098.1| ATP-dependent DNA helicase Rep [Shigella flexneri 2a str. 2457T]
 gi|56480432|ref|NP_709581.2| ATP-dependent DNA helicase Rep [Shigella flexneri 2a str. 301]
 gi|30043188|gb|AAP18909.1| rep helicase [Shigella flexneri 2a str. 2457T]
 gi|56383983|gb|AAN45288.2| rep helicase [Shigella flexneri 2a str. 301]
 gi|313647777|gb|EFS12224.1| ATP-dependent DNA helicase Rep [Shigella flexneri 2a str. 2457T]
          Length = 673

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                                           GL + T H    
Sbjct: 67  VGQTLGRKE-------------------------------------AHGLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|99034367|ref|ZP_01314391.1| hypothetical protein Wendoof_01000810 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 149

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 43/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            ++ + L++    +Q   ++  R   + A AG+GKT  +  R+  ++    A+   +L +
Sbjct: 1   MNDYLSLLN--PEQQSAVTNIDRPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RVLE+                                           
Sbjct: 59  TFTNKAANEMVSRVLELTGT---------------------------------------- 78

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T HA    I++       +  +F I   +   ++I+      
Sbjct: 79  NIPWLGTFHAIAAKILRLHAEIVGLNPNFTIIGVDDQLQVIKNIINEI 126


>gi|256828187|ref|YP_003156915.1| exodeoxyribonuclease V, beta subunit [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577363|gb|ACU88499.1| exodeoxyribonuclease V, beta subunit [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1168

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 4/150 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKT+ L    +RLLL  N     +L +T T AA  E+  R+ + ++  
Sbjct: 12  DGTTLIEASAGTGKTYTLTGLFVRLLLEKNLTVDQILVVTFTDAATEELRGRIRKRLSDV 71

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           + +    L A+  +++     +   + A   L   L      ++ TIH FC+ ++ +   
Sbjct: 72  AGVLAGELEAD-EELEWDLLARFGGTDAARRLELALRNFDLAQIFTIHGFCQRMLGRNGF 130

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           E   ++ F    E     L  +       S
Sbjct: 131 EC--SALFDTQLEPDLSDLRRQVCVDFWRS 158


>gi|59713128|ref|YP_205904.1| DNA helicase and single-stranded DNA-dependent ATPase [Vibrio
           fischeri ES114]
 gi|59481229|gb|AAW87016.1| DNA helicase and single-stranded DNA-dependent ATPase [Vibrio
           fischeri ES114]
          Length = 671

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPQQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKQESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+    I+++      + + F++ D++    L++E  +  +      + + L++    I
Sbjct: 84  FHSLGLDIIRREYKVLGLKAGFSLFDDQDQLALLKELTEKQID----GDKDLLRQLLSSI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|320354828|ref|YP_004196167.1| exodeoxyribonuclease V subunit beta [Desulfobulbus propionicus DSM
           2032]
 gi|320123330|gb|ADW18876.1| exodeoxyribonuclease V, beta subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 1172

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ L    +RLLL        +L +T T+AA AE+  R+   +     + 
Sbjct: 16  LLEASAGTGKTYTLALLFVRLLLERGLAIDQILVVTFTRAATAELRDRIRTRLREALDVL 75

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                A+   ++      +  S+ R  L   L       + TIH FC+ I++    E+++
Sbjct: 76  HGRRDADPLLLRLLTALPAARSRQR--LEDALVRMDEAAIHTIHGFCQRILRDHAFESSL 133

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              F +   E    L++E  +    + +   +EE
Sbjct: 134 P--FDLELRESEAALVQEVLEDFWRTHLYPASEE 165


>gi|123446867|ref|XP_001312180.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
 gi|121894018|gb|EAX99250.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
          Length = 727

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 43/166 (25%)

Query: 16  LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
            +     EQ  A  +      ++ A AGSGKT  L+ R+  ++    +P  +L +T T+ 
Sbjct: 5   YLDDLNEEQRAAVTASIEDPLFIYAGAGSGKTRTLICRIAYMIDQGVNPENILAMTFTRK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+   I   +                                           
Sbjct: 65  AADEIRERLKTFIGPKASSVTT-------------------------------------- 86

Query: 134 QTIHAFCEAIMQQFPLEANITSH---FAIADEEQSKKLIEEAKKST 176
            T H  C  I++Q P     + +   F IAD  + +K+I+ A  + 
Sbjct: 87  STFHQLCLNILKQNPFILGFSGNDQTFHIADNTEQRKIIKNAVNAL 132


>gi|197336384|ref|YP_002157309.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
 gi|197317874|gb|ACH67321.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
          Length = 671

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPQQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKQESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+    I+++      + + F++ D++    L++E  +  +      + + L++    I
Sbjct: 84  FHSLGLDIIRREYKVLGLKAGFSLFDDQDQLALLKELTEKQID----GDKDLLRQLLSSI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|313682829|ref|YP_004060567.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313155689|gb|ADR34367.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 1102

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 28/216 (12%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLL------------------LANAHPSTLLCLTH 70
           D      +SA AGSGKT+ L +R + +L                  L+ A P+ ++ +T+
Sbjct: 5   DIFNHVAISAGAGSGKTYTLSRRYINILVGFNLFYEGESSRPMLEALSPARPNEIVTITY 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG-----KKPNKSDMSKARHLLITIL 125
           T+A A EM  R+  +I       +  L  +              ++  +   + +L   L
Sbjct: 65  TEAGALEMKSRIFSLIQNTLRYIEGKLDLKHDDYDSIHKALNPLDQPWIEHVQSMLEHSL 124

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA---SIML 182
                  + TIH++C  +++QF     + S   I  +++      +A ++ L+    I+ 
Sbjct: 125 RYLSSATISTIHSYCLDLIEQFGDYLKLDSKPQIIGDDEKILAYTDAYRAVLSDEPEIIK 184

Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
           + N+ +  + Y++ +I+          +  +N   L
Sbjct: 185 EINQTI--SLYKLSQIAQKYSFNAQFREAFNNYALL 218


>gi|258652355|ref|YP_003201511.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555580|gb|ACV78522.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 1106

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 25/218 (11%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S  + +  + L + T  +  +   P     V A AGSGKT  +  RV+ L+      P  
Sbjct: 3   SAIDLARELGLPAPTAEQAAVIEAPLEPGLVVAGAGSGKTETMAARVVYLIATGQVRPEQ 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AAA ++ R+ + +   + L             G   + +D+          
Sbjct: 63  VLGLTFTRKAAAALAQRIRQRLALLTTLRPRT---------GSGRSPADLP--------- 104

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD- 183
               G   V T HAF   ++  F   A I     +     + +L           ++ D 
Sbjct: 105 ---AGDPDVSTYHAFGGRLIADFGPLAGIEPAARVLTPTGAWQLARRVVGRWDGDLLTDL 161

Query: 184 NNEELKKAFYEILEISNDE--DIETLISDIISNRTALK 219
             +++ +    I     D   D++ L  ++ +    L+
Sbjct: 162 GPDQVTERLLAISSALADHLTDVDLLSDELATVLDRLR 199


>gi|115377513|ref|ZP_01464713.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|310820075|ref|YP_003952433.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365453|gb|EAU64488.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309393147|gb|ADO70606.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 688

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 41/165 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTH 70
           +DL      ++           V A AGSGKT ++  R++ +L      A    +L +T 
Sbjct: 1   MDLSKLNPPQREAVITTEGPLLVLAGAGSGKTRVITHRIVHILNERPGGALARNILAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R++++                              +A+ +L         
Sbjct: 61  TNKAATEMKERLVKMAG---------------------------PRAQGVL--------- 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             V T HAF   ++++          FAIAD      LI  A + 
Sbjct: 85  --VCTFHAFGAEMLREDIHRLGWPRKFAIADMGDQLALIRRAMRD 127


>gi|218701309|ref|YP_002408938.1| ATP-dependent DNA helicase Rep [Escherichia coli IAI39]
 gi|218371295|emb|CAR19128.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli IAI39]
          Length = 673

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|293364067|ref|ZP_06610803.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma alligatoris
           A21JP2]
 gi|292552557|gb|EFF41331.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma alligatoris
           A21JP2]
          Length = 722

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHT 71
           ++L+     EQ LA     S   + A AGSGKT +L +++  L+   A  P  +L +T T
Sbjct: 6   VNLLKDLNPEQKLAVQYFDSHLRIIAGAGSGKTKVLTRKIAYLINEMAILPRQILAVTFT 65

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+ EM  R+ +  +                                           L
Sbjct: 66  NKASNEMHQRIAQYCSGE--------------------------------------MNKL 87

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            V T H  C  I+++   +      F I DE     +I+   K  
Sbjct: 88  NVFTFHGLCVHILRREAEKLGYKQDFQIIDESDKTLIIKNIYKRF 132


>gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
 gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
          Length = 862

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 44/212 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + +Q +  +  ++  + A+AG+GKT+ L  RV  L+    A    +LC+T T  AA EM
Sbjct: 4   NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++ + +   +                                      V T H+
Sbjct: 64  KGRIQSLVGSPAKAVE--------------------------------------VSTFHS 85

Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  I+QQ       + +   I DEE  K+L E  +   L  +   N   + K +  +  
Sbjct: 86  FCFFILQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANVIAMVKEYRSLYG 145

Query: 198 ISNDE---DIETLISDI-ISNRTALKLIFFFF 225
             +D+   D +  I  +    R A++  F  F
Sbjct: 146 FYSDDLLGDYKRTIERLQKEQREAIEQQFSSF 177


>gi|242280176|ref|YP_002992305.1| exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638]
 gi|242123070|gb|ACS80766.1| Exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638]
          Length = 1059

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 75/214 (35%), Gaps = 49/214 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS----------------TLLCLTHTKAAAAEMS 79
           V A+AGSGKT+ L  R L LL                        ++ +T T  AAAEM 
Sbjct: 5   VKASAGSGKTYELTGRFLSLLAGAQEEDSVPVCKSSQGKGYCWPEIMAVTFTNKAAAEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV+  +   +   +        K             A+  LI IL+    L ++TI + 
Sbjct: 65  ERVIRSLKNRALDIEGDGLGADWKPLD----------AKKQLIPILQRYNRLNIRTIDSL 114

Query: 140 CEAIMQQFPLEANITSHFAIADE----------------EQSKKLIEEAKKSTLASIMLD 183
              +++ F LE  ++  F +  E                E+   L +E     + S++L 
Sbjct: 115 LNLLVRIFALELGLSPEFELLFEPQALFEPNFNKFLAQCEEGDLLRKELLDDAVDSLVLK 174

Query: 184 NN-------EELKKAFYEILEISNDEDIETLISD 210
                    E+++     IL    D   E L   
Sbjct: 175 EEKQGFWLAEQMRMRLLSILTHVIDHPAERLTDQ 208


>gi|294789337|ref|ZP_06754575.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453]
 gi|294482762|gb|EFG30451.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453]
          Length = 663

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q        + +V A AGSGKT ++ +++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPEQQQAVEYIGGALFVLAGAGSGKTRVITEKIAYLITQAGYKPHHIAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +                                           GL V T
Sbjct: 61  KEMQERISHRLGK-------------------------------------NQTRGLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            HA    I+++     N   +F+I D   S KLI E   S
Sbjct: 84  FHALGMRILREEATNLNYKKNFSILDSSDSAKLIGEMLAS 123


>gi|301057782|ref|ZP_07198851.1| UvrD/REP helicase [delta proteobacterium NaphS2]
 gi|300448093|gb|EFK11789.1| UvrD/REP helicase [delta proteobacterium NaphS2]
          Length = 719

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 44/199 (22%)

Query: 18  SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +    EQL A    +    V A AGSGKT  LV RV RL+     P  +L LT T+ +A 
Sbjct: 9   NVLNPEQLKAVMTLSGPVLVIAGAGSGKTRTLVYRVARLVETGVPPEAILLLTFTRKSAQ 68

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM +R                              S++S  R   ++           T 
Sbjct: 69  EMLNR-----------------------------ASELSDKRCRFVSG---------GTF 90

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HA    +++    E    + F I D       +EE  +S +  + + +          + 
Sbjct: 91  HALAFRVLRNHAKELGYQNSFTILDRSD----MEEVLRSLVPDLKMSDKPARFPKRGTLA 146

Query: 197 EISND-EDIETLISDIISN 214
            I +   ++E  I  ++ N
Sbjct: 147 NIISKAANLEQPIEALMMN 165


>gi|120552955|ref|YP_957306.1| exodeoxyribonuclease V, beta subunit [Marinobacter aquaeolei VT8]
 gi|120322804|gb|ABM17119.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Marinobacter
           aquaeolei VT8]
          Length = 1241

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 23/207 (11%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSH 80
             SA + A+AG+GKT  +    +RL+L +               LL +T T+AA  E+  
Sbjct: 20  NGSALIEASAGTGKTFTIAILYVRLVLGHGQSEDSPLQNLLPPNLLVVTFTEAATKELRD 79

Query: 81  RVLEIITAWSH--------LSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGL 131
           R+   +T  +         L     +A I K++    P+ +   + R  L+   E     
Sbjct: 80  RIRTRLTQAAEVFSEAADSLEPTPETALIHKLRDDSYPDPASWPECRKKLLLAAEWMDEA 139

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V TIH FC  ++ +   ++   S F +  E    +L+E+  +    + +      L   
Sbjct: 140 AVSTIHGFCNRMLSEHAFDSG--SLFKLTLETDQSELLEDVARDYWRTFVYPLPPALMD- 196

Query: 192 FYEILEISNDEDIETLISDIISNRTAL 218
              +       D+   + ++I +  AL
Sbjct: 197 -EALSHWKTPTDLRKAVRNLIDDPAAL 222


>gi|253998774|ref|YP_003050837.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253985453|gb|ACT50310.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 665

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 39/177 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           ++S+  S Q  A         V A AGSGKT ++ Q++  L+      P  +  +T T  
Sbjct: 1   MLSKLNSPQREAVKYLDGPLLVLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   S                                       GL +
Sbjct: 61  AAREMQERVGHLLEGKSAK-------------------------------------GLTI 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            T H+    +++Q          F+I D   S K++ +   +T   ++     ++ +
Sbjct: 84  ATFHSLGLQMLRQEAALLGYKPQFSILDSSDSYKILADVLATTDKQLLRRTQSQISQ 140


>gi|238918066|ref|YP_002931580.1| ATP-dependent DNA helicase Rep [Edwardsiella ictaluri 93-146]
 gi|238867634|gb|ACR67345.1| ATP-dependent DNA helicase Rep, putative [Edwardsiella ictaluri
           93-146]
          Length = 726

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+ +       +  +T T  AA EM  R
Sbjct: 58  QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRVCGYQARHIAAVTFTNKAAREMKER 117

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 118 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 140

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D++    L+ +  +  L      +  +L++    I    ND
Sbjct: 141 EIIKREYKALGMKSNFSLFDDQDQLALLTDLTERWLEK----DKTQLQQLIATISNWKND 196


>gi|90407425|ref|ZP_01215609.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3]
 gi|90311456|gb|EAS39557.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3]
          Length = 1196

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 12/170 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    +RLLL +              +L +T T+AA AE+  R+ + 
Sbjct: 22  LIEASAGTGKTYTIASLFIRLLLGHGDENSHQTPLSVDKILVVTFTEAATAELRSRIRDR 81

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I +   L   +  +    +Q    +  ++     LL           V TIH FC+ ++ 
Sbjct: 82  IIS-VRLDFMLGKSADPFVQALLDSSLEIDADIRLLRFAELQMDEAAVYTIHGFCQRMLM 140

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           Q   E+   S F     E    LIE+A      +     ++ L +  Y  
Sbjct: 141 QNAFESG--SLFEQKLLEDDSLLIEQACNDFWRTHFYGLSDNLTELIYSY 188


>gi|225023329|ref|ZP_03712521.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC
           23834]
 gi|224943974|gb|EEG25183.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC
           23834]
          Length = 1241

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 6/172 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
             L   P  +  V A+AG+GKT+ +     RL+ L    P  +L +T T+AA AE+ +R+
Sbjct: 7   AQLPLPPQGTHLVEASAGTGKTYSIAALFTRLVVLEGWAPENILVVTFTEAATAELKNRL 66

Query: 83  LEIIT---AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
              +    A     +      +  +  +   K + SK    L   L       + TIH F
Sbjct: 67  RARLGEVLAALQSGETPADEFLQHLLAEALAKQERSKLILQLQAALSGFDTAAIYTIHGF 126

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           C  ++  +     +         + + +L+  A +      + D+ +  + A
Sbjct: 127 CLRVLGDYAFLCGVPFELETGPVDTAARLV--AAQDFWREHVADHPQNARIA 176


>gi|146329291|ref|YP_001209094.1| DNA helicase II [Dichelobacter nodosus VCS1703A]
 gi|146232761|gb|ABQ13739.1| DNA helicase II [Dichelobacter nodosus VCS1703A]
          Length = 712

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 58/160 (36%), Gaps = 40/160 (25%)

Query: 17  ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +S   + Q  A         V A AGSGKT +LVQR+  L+ +A   P  LL LT T  A
Sbjct: 7   LSGLNAAQRDAVTTKERIVRVIAGAGSGKTRVLVQRMQWLMTVAGCMPYQLLALTFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +                                      +   +   L + 
Sbjct: 67  AQEMRQRLEQ--------------------------------------SAACSLNQLWMG 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+ C  I++Q+         F + D +   +LI+   +
Sbjct: 89  TFHSICLRILRQYAELVGWEKSFIVIDSDDQLRLIKRLLQ 128


>gi|288817811|ref|YP_003432158.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288787210|dbj|BAI68957.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308751409|gb|ADO44892.1| UvrD/REP helicase [Hydrogenobacter thermophilus TK-6]
          Length = 657

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 42/189 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S++       +   + A AGSGKT  L  ++  L++        +L LT T  AA E+
Sbjct: 3   NPSQERAVKHFGKPLLIVAGAGSGKTKTLTYKLEHLVVKRGLRQDRILILTFTNKAAREI 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++++                                                 T H+
Sbjct: 63  RERIVKLTNKEVP----------------------------------------WAGTFHS 82

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYEILE 197
               I++Q   +  I   F+I DE+  KK+++E  +   L+  ML+       +  E L 
Sbjct: 83  IALKILRQEGYKMGIDPSFSIIDEDDRKKILKEVLRRMNLSKDMLEVANNYITSRRESLR 142

Query: 198 ISNDEDIET 206
              D  +E 
Sbjct: 143 EPEDSTLEE 151


>gi|118580565|ref|YP_901815.1| exodeoxyribonuclease V, beta subunit [Pelobacter propionicus DSM
           2379]
 gi|118503275|gb|ABK99757.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pelobacter
           propionicus DSM 2379]
          Length = 1203

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 12/161 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +    LRL++  +  P  +L +T+T+AA  E+  R+   I       
Sbjct: 16  LIEASAGTGKTYAIACLYLRLVIESDLTPEQILVVTYTEAATEELRGRIRSRIRQALDTF 75

Query: 94  DEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +S +   +  +Q           AR+ L   L++     + TIH FC   +Q    E
Sbjct: 76  SGTVSKDPFLLGLVQKVNKEGPGEDIARNRLDRALKSFDLASIFTIHGFCLRALQDNAFE 135

Query: 151 ANITSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEEL 188
           +      ++ D E       L++E                L
Sbjct: 136 SG-----SLYDTELITDQADLLQEVVDDFWRRTFFSEPAPL 171


>gi|261343043|ref|ZP_05970901.1| ATP-dependent DNA helicase Rep [Enterobacter cancerogenus ATCC
           35316]
 gi|288314606|gb|EFC53544.1| ATP-dependent DNA helicase Rep [Enterobacter cancerogenus ATCC
           35316]
          Length = 674

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKTVLQQLISTISNWKND 145


>gi|226947150|ref|YP_002802223.1| exodeoxyribonuclease V subunit beta [Azotobacter vinelandii DJ]
 gi|226722077|gb|ACO81248.1| exodeoxyribonuclease V, beta subunit [Azotobacter vinelandii DJ]
          Length = 1226

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 12/158 (7%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T AA  E+  R+
Sbjct: 19  GSRLIEASAGTGKTFTISALYLRLVLGHGGEAGFSRELLPPEILVVTFTDAATRELRDRI 78

Query: 83  LEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              +   + +  +E     + +      +          L    +      V TIH +C+
Sbjct: 79  RARLVEAAKVFREEAPGDGLLRQLRADFSAERWPACARRLDIAAQWMDEAAVSTIHGWCQ 138

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            ++++   ++   S F    E    +L+ E  +     
Sbjct: 139 RMLREHAFDSG--SLFTQTLETDHGELLAEVVRDYWRQ 174


>gi|313200859|ref|YP_004039517.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312440175|gb|ADQ84281.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 665

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 39/177 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           ++S+  S Q  A         V A AGSGKT ++ Q++  L+      P  +  +T T  
Sbjct: 1   MLSKLNSPQREAVKYLDGPLLVLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   S                                       GL +
Sbjct: 61  AAREMQERVGHLLEGKSAK-------------------------------------GLTI 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            T H+    +++Q          F+I D   S K++ +   +T   ++     ++ +
Sbjct: 84  ATFHSLGLQMLRQEAALLGYKPQFSILDSSDSYKILADVLATTDKQLLRRTQSQISQ 140


>gi|262193706|ref|YP_003264915.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262077053|gb|ACY13022.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 688

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 53/164 (32%), Gaps = 36/164 (21%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            + +DL      ++      +    V A AGSGKT ++  R++RLL +   P  +  LT 
Sbjct: 1   MQNMDLAKLNTPQREAVLHGSGPVLVLAGAGSGKTRVITYRIVRLLRSGIPPQAIAALTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++                                        T   
Sbjct: 61  TNRAAEEMRERVAALLGDRK------------------------------------TASM 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           L + T H+    I++           F I D      ++ E  +
Sbjct: 85  LTMGTFHSLGLRILRSEHEAMGYPRGFVIYDTSDQLGVVRELLR 128


>gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95135000|gb|EAT16654.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 676

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 38/161 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +DL+   + ++        +  V A AGSGKT ++  R+  LL        ++ LT T  
Sbjct: 1   MDLMQLNEPQRQAVLHTEGALLVLAGAGSGKTRVITCRIGHLL-ERVPAEQIVALTFTNK 59

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV+E +                                           GL +
Sbjct: 60  AAREMRDRVVEQVGRGKAK-------------------------------------GLTI 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            T H+    I++Q   +     +F+I       +L+ +  +
Sbjct: 83  STFHSLGVRILRQEIEQLGYKKNFSIYPTSDQLRLVRDMVQ 123


>gi|282858262|ref|ZP_06267448.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588971|gb|EFB94090.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 1131

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AGSGKT  L    + +L+ N    + +L +T T  A  EM  R+L  +    +     
Sbjct: 15  ASAGSGKTFTLTVEYISILVKNPEDYNKMLAVTFTNKATQEMKLRILSQLYGIGNGLPSS 74

Query: 97  LSAEIT-KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +  +  K +      S  + A ++L  +       +VQTI AF + +++    E  +T+
Sbjct: 75  DNYLLQVKAKTGLTETSIRNNALYILEKLTHEYQNFRVQTIDAFFQTVLRNLGKELGLTA 134

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +  +  +  ++++  +A    + S+    N+ + +   E +  + +ED
Sbjct: 135 NLRV--DLNTQQVEAKAVDQLIDSL--RENDPMLRWIDEYISSNIEED 178


>gi|149910376|ref|ZP_01899018.1| putative exodeoxyribonuclease V [Moritella sp. PE36]
 gi|149806524|gb|EDM66493.1| putative exodeoxyribonuclease V [Moritella sp. PE36]
          Length = 1190

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 26/194 (13%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------------HPSTLLCLTHTKAAAAEMSH 80
            + A+AG+GKT  +    LRLLL +               +   +L +T T+AA AE+  
Sbjct: 19  LIEASAGTGKTFTIASLYLRLLLGHGGDNAYNKEGQIEALNVDQILVVTFTEAATAELRD 78

Query: 81  RVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           R+   I  A    S       +  +     N+ D ++    L+          + TIH F
Sbjct: 79  RIRARIHQARIAFSIGNSDDPVISLLLTDINELDYARCAKSLLAAERQMDEAAIYTIHGF 138

Query: 140 CEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           C+ +++Q   E+     S F I DE Q   L   A      S      + +    +    
Sbjct: 139 CQRMLKQNAFESGALFESEF-ITDESQ---LKFNAIADFWRSHFYRYKDGMIDMVHSFWS 194

Query: 198 ISNDEDIETLISDI 211
                  + L+ DI
Sbjct: 195 SP-----QALLRDI 203


>gi|57238970|ref|YP_180106.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
 gi|57161049|emb|CAH57956.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
          Length = 639

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 42/174 (24%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D I+    +Q  A ++      + A AG+GKT  +  R+  +L  N A PS +L +T T 
Sbjct: 3   DYITSLNEDQKKAVTNINGPILILAGAGTGKTRTITSRIAYILNNNFALPSQILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ E                                        L     + 
Sbjct: 63  KAANEMLSRINE----------------------------------------LTCASNIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           + T HA    I++Q      + S F I   +   ++I+            D  +
Sbjct: 83  LGTFHAIATKILRQHAEAVGLKSDFTIIGTDDQLQVIKTIVNDMHPEYASDAYK 136


>gi|300904028|ref|ZP_07121910.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 84-1]
 gi|300403980|gb|EFJ87518.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 84-1]
          Length = 673

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKPPSQAAASAIGERDRI 163


>gi|237806835|ref|YP_002891275.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187]
 gi|237499096|gb|ACQ91689.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187]
          Length = 1175

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRLLL +               +L +T T+AA AE+  R+L+
Sbjct: 17  LIEASAGTGKTYTIAGLYLRLLLGHGSGDAAFGTPLPVDRILVVTFTEAATAELRQRILK 76

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   +  + E+  ++   IQ       D   A   L+T         + TIH FC+ ++
Sbjct: 77  AIRD-TRRALEVGHSDDQLIQNLISECPDQKLALRQLLTAERQMDEAAIYTIHGFCQRML 135

Query: 145 QQFPLEANITSHFAIADEE---QSKKLIEEAKKSTLASI 180
            Q   E+      ++ D E   + + L   A       I
Sbjct: 136 TQNAFESG-----SLFDNEFLTEEQTLRAGAVADFWRHI 169


>gi|254586149|ref|XP_002498642.1| ZYRO0G15224p [Zygosaccharomyces rouxii]
 gi|238941536|emb|CAR29709.1| ZYRO0G15224p [Zygosaccharomyces rouxii]
          Length = 1161

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 38/163 (23%)

Query: 17  ISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            S    +Q +A+  DP  +  V A  G+GKT +L  RV  L+L +   P  ++  T T  
Sbjct: 11  FSSLNLQQQVAAKYDPDLAVQVIAGPGTGKTKVLTSRVAYLMLHHKIRPQDIIVTTFTNK 70

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R++ ++   S                                        L +
Sbjct: 71  AAKEMIDRLVSMLRDTSI-----------------------------------RVSDLMI 95

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C  I+ ++     +   + I DE++ + ++    +  
Sbjct: 96  GTFHSVCLRILSRYGHRIGLMKDWRIIDEKEIEVIVHNMVEKM 138


>gi|281180827|dbj|BAI57157.1| DNA helicase Rep [Escherichia coli SE15]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+ +       +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRSCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|218885868|ref|YP_002435189.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756822|gb|ACL07721.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1161

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 46/203 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS---------------TLLCLTHTKAAAAEMSH 80
           + A+AGSGKT+ L +R L LL                       +L +T T  AA+EM  
Sbjct: 9   IKASAGSGKTYTLTRRFLSLLAGARDEDGRACSLAVEGGHCWPDILAVTFTNKAASEMKE 68

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV+ ++   + L+D   + +        P     ++A   +  IL   G L ++TI +  
Sbjct: 69  RVIRLLKEHA-LADPAQARKDGGDGAWPP-----ARAARWVDIILRRYGALNIRTIDSLL 122

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++   LE ++   F  +                          E  +  Y+++    
Sbjct: 123 TMLVRLAALELSLPPDFEPSFSPD----------------------EYFEPLYDLILDRA 160

Query: 201 DEDIETLISDIISNRTALKLIFF 223
                 L  D+   R A +L+ F
Sbjct: 161 RRGDAQLRDDV---RDACRLLLF 180


>gi|170769825|ref|ZP_02904278.1| ATP-dependent DNA helicase Rep [Escherichia albertii TW07627]
 gi|170121263|gb|EDS90194.1| ATP-dependent DNA helicase Rep [Escherichia albertii TW07627]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRDCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|302553996|ref|ZP_07306338.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302471614|gb|EFL34707.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 1044

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 31/182 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 24  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 83

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAE++ RV + +        + +  +                           PG   + 
Sbjct: 84  AAELAERVRKALVKAGVTDPDAIDPD-------------------------NPPGEPVIS 118

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +             L ++F +
Sbjct: 119 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRFQLAARVLRE-----APGPYPALTRSFPD 173

Query: 195 IL 196
           ++
Sbjct: 174 LV 175


>gi|283787540|ref|YP_003367405.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
 gi|282950994|emb|CBG90671.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
          Length = 677

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  L     ++   L++    I    ND
Sbjct: 90  EIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLLE----EDKVLLQQLISTISNWKND 145


>gi|15605339|ref|NP_220125.1| DNA helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789347|ref|YP_328433.1| DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|237804958|ref|YP_002889112.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|3329053|gb|AAC68211.1| DNA Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167877|gb|AAX50885.1| DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|231273258|emb|CAX10173.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436144|gb|ADH18318.1| DNA helicase [Chlamydia trachomatis G/9768]
 gi|296437072|gb|ADH19242.1| DNA helicase [Chlamydia trachomatis G/11222]
 gi|296438004|gb|ADH20165.1| DNA helicase [Chlamydia trachomatis G/11074]
 gi|297140506|gb|ADH97264.1| DNA helicase [Chlamydia trachomatis G/9301]
 gi|297748738|gb|ADI51284.1| PcrA [Chlamydia trachomatis D-EC]
 gi|297749618|gb|ADI52296.1| PcrA [Chlamydia trachomatis D-LC]
          Length = 634

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 38/163 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2   LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  RV        +    +                                    V
Sbjct: 62  AANELKERVQSQCRELGYSDVPM------------------------------------V 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+++     +  S+F I D+  S+KLI++  +  
Sbjct: 86  STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKLIKQCLRKL 128


>gi|237749450|ref|ZP_04579930.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13]
 gi|229380812|gb|EEO30903.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13]
          Length = 685

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 38/162 (23%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
           ++  ++  ++Q  A         V A AGSGKT ++ Q++  L+ +       +  LT T
Sbjct: 1   MNAPARLNAQQHDAVTYMDGPCLVLAGAGSGKTRVITQKIAHLIDSGVYEAKNIAALTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AAAEM  R+ +++T                                           L
Sbjct: 61  NKAAAEMQERISKLLTEPK------------------------------------QASQL 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            + T H+    I++Q   E N+   F+I D +    L+++  
Sbjct: 85  TISTFHSLGVKILRQEAAELNLKDRFSILDSDDCFSLVQDLA 126


>gi|255311430|ref|ZP_05354000.1| DNA helicase [Chlamydia trachomatis 6276]
 gi|255317731|ref|ZP_05358977.1| DNA helicase [Chlamydia trachomatis 6276s]
          Length = 634

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 38/163 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2   LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  RV        +    +                                    V
Sbjct: 62  AANELKERVQSQCRELGYSDVPM------------------------------------V 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+++     +  S+F I D+  S+KLI++  +  
Sbjct: 86  STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKLIKQCLRKL 128


>gi|329942325|ref|ZP_08291135.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10]
 gi|328815235|gb|EGF85223.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10]
          Length = 724

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 27  ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80
              P  S     ++ A+AG+GKT  + Q VLR LL  +  H   +L +T T AA  E+  
Sbjct: 6   IFHPETSIQGKYFLEASAGTGKTFTIEQIVLRALLEGSVSHVENILVVTFTNAATNELKL 65

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ E +   +      ++     +        D+ +    +   L +   + + TIH FC
Sbjct: 66  RIQENLKQAASQLKSAITNPEHPLPPYLSPPCDVKQLYMQVRNALASIDRMAIFTIHGFC 125

Query: 141 EAIMQQFPLEANITS 155
             ++QQ   E  I+ 
Sbjct: 126 NYVLQQHFPEMQISQ 140


>gi|321310796|ref|YP_004193125.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802640|emb|CBY93286.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
          Length = 639

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            K ++     P +   V A AG+GKT +L++R+LR +     PS +L +T T  +  E+S
Sbjct: 4   NKGQREAVEAPFKPTLVIAGAGTGKTTVLIERILRYIDEGIEPSRILAITFTNKSKDEIS 63

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           HR+ +     S                                         ++ T HAF
Sbjct: 64  HRIRKRSPVESSP---------------------------------------RIYTFHAF 84

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              ++++   +      F + DE   + +     K 
Sbjct: 85  FYWVLRKDIGKLGRDKDFRVIDENDQRAIFRMILKE 120


>gi|290477141|ref|YP_003470056.1| rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus
           bovienii SS-2004]
 gi|289176489|emb|CBJ83298.1| Rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus
           bovienii SS-2004]
          Length = 676

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+ A       +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRACGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKETR-------------------------------------GLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++  + L+++     L     ++ + L+K    I   
Sbjct: 87  LGLEIIKREYKALGMKSNFSLFDDQDQRVLLKDLTADLLE----EDKDLLQKLNSSISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 864

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 38/155 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             S++   +    S  V+A  G+GKT ++  R    ++    P+ +LCLT T  AA EM 
Sbjct: 17  NDSQKQAVNQIEGSLLVTAPVGTGKTSVISLRAANAIVNGFDPNKILCLTFTNRAAREMK 76

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+++ +   +  +                                       ++T HA 
Sbjct: 77  ERIIQDLGPRAQNT--------------------------------------TIKTFHAL 98

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           C  I++       I + F I DEE +K ++ +  K
Sbjct: 99  CAEIIRIESDILGIPADFNIFDEEDAKTILNDVIK 133


>gi|324111005|gb|EGC04992.1| ATP-dependent DNA helicase Rep [Escherichia fergusonii B253]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|313894811|ref|ZP_07828371.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976492|gb|EFR41947.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 643

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++   +Q L   +    + + A AG+GKT  +V R   ++     P+ +L  T T+ AA
Sbjct: 9   LAELNEQQRLPVQEYKTPSLIIAGAGAGKTKTIVSRTAYMIEDGVSPANILLFTFTQKAA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV++ +   +                                       G+ V T
Sbjct: 69  DEMRTRVIQALGDEAR--------------------------------------GIFVGT 90

Query: 136 IHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKST 176
            H+FC  +++ F    +  T+ F+I DE+ +  L+++A +S 
Sbjct: 91  YHSFCAKLLRYFQNRFSGYTNQFSIYDEKDAMNLLKKAMRSI 132


>gi|239995612|ref|ZP_04716136.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii ATCC
           27126]
          Length = 1321

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 17/206 (8%)

Query: 15  DLISQTKSE--QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
           D  S T+++   ++A        + A+AG+GKT  + +  LRLLL        +L +T T
Sbjct: 21  DDHSGTEAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLYLRLLLEKKLTVKEILVMTFT 80

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP------NKSDMSKARHLLITIL 125
           KAA  E+  R+   +     +  +          G  P      N  D+ ++  LL    
Sbjct: 81  KAATEEIKGRIAATLREALLIWQQAKDNGNEIDSGCDPVYQYLFNSCDIDESLALLKAAQ 140

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                  V TIH FC+ ++ Q    +       + +   +  L  EA +  +  I    +
Sbjct: 141 LELDEASVFTIHGFCQHVITQLAFNSGFAMSLNLGN--DTSDLYLEAAEDFIRKISKSED 198

Query: 186 EELKKAFYEILEISNDEDIETLISDI 211
           E      + +L  S     + L+ + 
Sbjct: 199 E------FRLLAESGWHTPDRLLQEF 218


>gi|319426281|gb|ADV54355.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens 200]
          Length = 1256

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT+ +    LRLLL +    P     +L +T T AA  E+  R+   
Sbjct: 33  GGSRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRR 92

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       +     +         + S A       L++     + TIH FC+ I+
Sbjct: 93  IQVAFKCFLGLPIEDPFVQALYDNTPVDERSIALRRFDLALKSLDEAAIFTIHGFCQRIL 152

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180
                E+++   S F + D E     +  A +      
Sbjct: 153 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 186


>gi|325499250|gb|EGC97109.1| ATP-dependent DNA helicase Rep [Escherichia fergusonii ECD227]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|218550997|ref|YP_002384788.1| ATP-dependent DNA helicase Rep [Escherichia fergusonii ATCC 35469]
 gi|218358538|emb|CAQ91186.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           fergusonii ATCC 35469]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|88606993|ref|YP_505476.1| UvrD/Rep family helicase [Anaplasma phagocytophilum HZ]
 gi|88598056|gb|ABD43526.1| helicase, UvrD/Rep family [Anaplasma phagocytophilum HZ]
          Length = 659

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 41/162 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           +++    ++           + A AG+GKT  +  R+  ++    A P  +L +T T  A
Sbjct: 25  MLNLNAEQKEAVLQVAGPVLILAGAGTGKTRTITARMGHIIKEGYAQPHEILAVTFTNKA 84

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  I+                                        T  G+ + 
Sbjct: 85  AKEMLSRVNNIV----------------------------------------TASGIWLG 104

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA    I++       ++S+F I   +   ++ +      
Sbjct: 105 TFHAIAARILRSHAELVGLSSNFTIISPDDQLQITKTIAADM 146


>gi|282866610|ref|ZP_06275652.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558512|gb|EFB64072.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 1164

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 31/184 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 24  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 83

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + + A      +++  +                           PG   + 
Sbjct: 84  AGELAERVRKALVAAGVTDPDVIDPD-------------------------NPPGEPSIS 118

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++ +  L   +     +  +    +L     +             L ++F  
Sbjct: 119 TYHAFAGRLLTEHGLRIGLEPTTRLLADATRYQLAARVLRE-----APGPYPALTRSFPT 173

Query: 195 ILEI 198
           ++  
Sbjct: 174 LVSD 177


>gi|153004883|ref|YP_001379208.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152028456|gb|ABS26224.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 745

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 42/206 (20%)

Query: 11  SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +  ++       +Q+   +       V A AGSGKT  L  RV RLL   A P ++L LT
Sbjct: 27  ARALNYQGLLNDQQIAVVEAGDGPILVVAGAGSGKTRTLTWRVARLLAEGASPESILLLT 86

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV            E+   +  +I G                       
Sbjct: 87  FTNKAAQEMLRRVG-----------EVCRLDTRQITG----------------------- 112

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                T H     ++++   E      ++I D E S  ++  A      ++      +  
Sbjct: 113 ----GTFHHVAHQLLREHGGELGYRKGYSILDREDSSDVMSAAIADCGLAVGARRFPK-A 167

Query: 190 KAFYEILEISNDEDIETLISDIISNR 215
               +++ ++ +   +T ++D++++R
Sbjct: 168 DVLIDLVSMAVNT--QTPLADVLADR 191


>gi|116328254|ref|YP_797974.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330978|ref|YP_800696.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120998|gb|ABJ79041.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124667|gb|ABJ75938.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 665

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 39/153 (25%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +  + QL A         V A AG+GKT  +V R+ +L+ +    S++L LT T+ AA E
Sbjct: 6   ELNAAQLEAVLTQEGPVLVLAGAGTGKTKTIVSRLAQLVSSGVPTSSILLLTFTRKAARE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R           +  I     T++QG                            T H
Sbjct: 66  MLLR-----------ASSIGDKRCTEVQG---------------------------GTFH 87

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           +FC  ++++F     ++S F I DE  +  + +
Sbjct: 88  SFCSGVLRKFAPVLGLSSGFTILDESDTLDVFQ 120


>gi|294102168|ref|YP_003554026.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261]
 gi|293617148|gb|ADE57302.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261]
          Length = 660

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 44/168 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D ++  + E +   D      V A AGSGKT +L  ++  L+    A P  +L +T T
Sbjct: 7   ILDKLNPRQQEAVRYCD--GPLLVLAGAGSGKTRVLAHKIAYLIEKGYASPKGILAVTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++ A +                                        +
Sbjct: 65  NKAAREMGERVQALVGAKA--------------------------------------SAM 86

Query: 132 KVQTIHAFCEAIMQQFP---LEANITSHFAIADEEQSKKLIEEAKKST 176
           +V T H+F    + +         +   FAI D   S+ L+++  +  
Sbjct: 87  QVSTFHSFGLHFLFRNSDQLEFLGLRKGFAIFDRNDSRSLVKKIMEDL 134


>gi|218960875|ref|YP_001740650.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729532|emb|CAO80444.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas
           acidaminovorans]
          Length = 732

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
             SQ    QL + +D      V A AGSGKT  L+ R   L+     HP  +L +T T  
Sbjct: 13  YASQLNERQLEVVTDTENPVLVLAGAGSGKTRSLIYRTAYLIKEKQVHPWNILIVTFTNK 72

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+ +++                                            L V
Sbjct: 73  AARELQERLEKLLNIPVR--------------------------------------SLWV 94

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T HA C  I++         ++F+I DE+  K L+++  K 
Sbjct: 95  GTFHAICCRILRFESAHLPFNANFSIYDEDTQKSLLKKIYKE 136


>gi|146293207|ref|YP_001183631.1| exodeoxyribonuclease V subunit beta [Shewanella putrefaciens CN-32]
 gi|145564897|gb|ABP75832.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens
           CN-32]
          Length = 1251

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT+ +    LRLLL +    P     +L +T T AA  E+  R+   
Sbjct: 28  GGSRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRR 87

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       +     +         + S A       L++     + TIH FC+ I+
Sbjct: 88  IQVAFKCFLGLPIEDPFVQALYDNTPVDERSIALRRFDLALKSLDEAAIFTIHGFCQRIL 147

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180
                E+++   S F + D E     +  A +      
Sbjct: 148 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 181


>gi|120598716|ref|YP_963290.1| exodeoxyribonuclease V subunit beta [Shewanella sp. W3-18-1]
 gi|120558809|gb|ABM24736.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. W3-18-1]
          Length = 1256

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85
             S  + A+AG+GKT+ +    LRLLL +    P     +L +T T AA  E+  R+   
Sbjct: 33  GGSRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRR 92

Query: 86  IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  A+       +     +         + S A       L++     + TIH FC+ I+
Sbjct: 93  IQVAFKCFLGLPIEDPFVQALYDNTPVDERSIALRRFDLALKSLDEAAIFTIHGFCQRIL 152

Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180
                E+++   S F + D E     +  A +      
Sbjct: 153 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 186


>gi|157368405|ref|YP_001476394.1| ATP-dependent DNA helicase Rep [Serratia proteamaculans 568]
 gi|157320169|gb|ABV39266.1| ATP-dependent DNA helicase Rep [Serratia proteamaculans 568]
          Length = 674

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 43/201 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIHNCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTMGR--------------------------KEAR-----------GLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D++    L++E  +  L     ++   + +    I   
Sbjct: 87  LGLEIIKREYVALGMKSNFSLFDDQDQLALLKELTEKWLE----NDKTLVAQLISTISNW 142

Query: 199 SNDE-DIETLISDIISNRTAL 218
            ND  D +  +    S R  L
Sbjct: 143 KNDLVDPQKAMELARSERDKL 163


>gi|145219721|ref|YP_001130430.1| exodeoxyribonuclease V, beta subunit [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205885|gb|ABP36928.1| exodeoxyribonuclease V, beta subunit [Chlorobium phaeovibrioides
           DSM 265]
          Length = 1167

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 17/213 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA-WSHL 92
            V A+AG+GKT+ L +  LRL++     P ++L +T+T+AA  E+  ++ E I    + L
Sbjct: 16  LVEASAGTGKTYALTELYLRLIIEKELLPESILVVTYTEAATKELRQKIRERIRDTTAML 75

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +  +   +     G    +    +   LL   L       V TIH FC   +Q    E+ 
Sbjct: 76  ASPLECTKRLASLGSLAMEKGAGEVSSLLENALYLLDTASVFTIHGFCLRALQDNAFESG 135

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--------NEELKKAFYEILEISNDEDI 204
                 IA     ++L          S    +         +E  ++F   L        
Sbjct: 136 SLYDTEIA--ADERELAGSIVDDFWRSRYFSSTAVLPGYAMKESPESFLRFLGEVRASSG 193

Query: 205 ETLI-----SDIISNRTALKLIFFFFSYLWRRK 232
           E +I     SDI++     + ++   + +WR +
Sbjct: 194 ERIIPQFSSSDIVAIEDECQSLYSQIAEMWRDE 226


>gi|218692056|ref|YP_002400268.1| ATP-dependent DNA helicase Rep [Escherichia coli ED1a]
 gi|218429620|emb|CAR10442.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli ED1a]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|110644106|ref|YP_671836.1| ATP-dependent DNA helicase Rep [Escherichia coli 536]
 gi|191174367|ref|ZP_03035872.1| ATP-dependent DNA helicase Rep [Escherichia coli F11]
 gi|300979305|ref|ZP_07174489.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 200-1]
 gi|110345698|gb|ABG71935.1| ATP-dependent DNA helicase Rep [Escherichia coli 536]
 gi|190905344|gb|EDV64978.1| ATP-dependent DNA helicase Rep [Escherichia coli F11]
 gi|300308058|gb|EFJ62578.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 200-1]
 gi|324014722|gb|EGB83941.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 60-1]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|319788731|ref|YP_004090046.1| UvrD/REP helicase [Ruminococcus albus 7]
 gi|315450598|gb|ADU24160.1| UvrD/REP helicase [Ruminococcus albus 7]
          Length = 1231

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 25/176 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKA 73
           +S T+ +Q       R   VSA AGSGKT +L++R++RLL           LL +T T  
Sbjct: 3   VSWTEDQQKAIDSYGRGVTVSAAAGSGKTAVLIERIIRLLTDKEKAIPADRLLAVTFTID 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAA+M  +               L+A   K   + P    + + + L           ++
Sbjct: 63  AAAQMRDK---------------LNAAFEKKLREDPENVWVLQQQDLAQLA-------RI 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            TI +FC  ++++   +   T +  I  E +   + + A +     +  ++ +E K
Sbjct: 101 STIDSFCFDMVKENLNKFEFTGNLKILSEAECDMIFDTAFEQAAEELCANDPDEYK 156


>gi|260857816|ref|YP_003231707.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O26:H11 str. 11368]
 gi|257756465|dbj|BAI27967.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O26:H11 str. 11368]
 gi|323155180|gb|EFZ41364.1| ATP-dependent DNA helicase Rep [Escherichia coli EPECa14]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|239813421|ref|YP_002942331.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239799998|gb|ACS17065.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 712

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 57/170 (33%), Gaps = 40/170 (23%)

Query: 17  ISQTKSEQLLASDPT----------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           +S    EQ  A +            R   V A AGSGKT  L  RV  L+        LL
Sbjct: 30  LSALNDEQRAAVEHGVGTLTAGRDERPLLVIAGAGSGKTSTLAHRVAHLIAGGVDLQRLL 89

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT ++ AA EM  R  +++                              AR L +   +
Sbjct: 90  LLTFSRRAAQEMERRAGQVL------------------------------ARVLGLKSDK 119

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            P      T H     +++++     +  HF I D   ++ L+   +   
Sbjct: 120 PPALPWAGTFHGIGARLLREYAAHIGLNDHFTIHDRGDAEDLMGLVRHEL 169


>gi|82779041|ref|YP_405390.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae Sd197]
 gi|309784490|ref|ZP_07679128.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1617]
 gi|81243189|gb|ABB63899.1| rep helicase [Shigella dysenteriae Sd197]
 gi|308927596|gb|EFP73065.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1617]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|323974362|gb|EGB69490.1| ATP-dependent DNA helicase Rep [Escherichia coli TW10509]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|300900679|ref|ZP_07118832.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 198-1]
 gi|300355828|gb|EFJ71698.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 198-1]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|91213298|ref|YP_543284.1| ATP-dependent DNA helicase Rep [Escherichia coli UTI89]
 gi|117626039|ref|YP_859362.1| ATP-dependent DNA helicase Rep [Escherichia coli APEC O1]
 gi|218560843|ref|YP_002393756.1| ATP-dependent DNA helicase Rep [Escherichia coli S88]
 gi|237702787|ref|ZP_04533268.1| rep helicase [Escherichia sp. 3_2_53FAA]
 gi|91074872|gb|ABE09753.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia
           coli UTI89]
 gi|115515163|gb|ABJ03238.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli APEC O1]
 gi|218367612|emb|CAR05396.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli S88]
 gi|226902958|gb|EEH89217.1| rep helicase [Escherichia sp. 3_2_53FAA]
 gi|294491804|gb|ADE90560.1| ATP-dependent DNA helicase Rep [Escherichia coli IHE3034]
 gi|307628841|gb|ADN73145.1| ATP-dependent DNA helicase Rep [Escherichia coli UM146]
 gi|315284673|gb|EFU44118.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 110-3]
 gi|323949337|gb|EGB45227.1| ATP-dependent DNA helicase Rep [Escherichia coli H252]
 gi|323954092|gb|EGB49889.1| ATP-dependent DNA helicase Rep [Escherichia coli H263]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|15892547|ref|NP_360261.1| DNA helicase II [Rickettsia conorii str. Malish 7]
 gi|81595570|sp|Q92HZ6|UVRD_RICCN RecName: Full=Probable DNA helicase II homolog
 gi|15619709|gb|AAL03162.1| DNA helicase II [Rickettsia conorii str. Malish 7]
          Length = 653

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM
Sbjct: 11  NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV  +I  +                                        GL + T H+
Sbjct: 71  AERVNSLINCY----------------------------------------GLNIGTFHS 90

Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
               I++     L   + + F I   +   KL+++  K
Sbjct: 91  MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128


>gi|15804368|ref|NP_290408.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 EDL933]
 gi|12518638|gb|AAG58972.1|AE005609_4 rep helicase, a single-stranded DNA dependent ATPase [Escherichia
           coli O157:H7 str. EDL933]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VXQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|326443255|ref|ZP_08217989.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1198

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 41/221 (18%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 16  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV   +        + +  +                           PG  ++ 
Sbjct: 76  AGELAERVRTALVRAGVTDPDAIDPD-------------------------RPPGEPRIS 110

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIM 181
           T HAF   ++    L   +     +  +    +L  +  +             STL   +
Sbjct: 111 TYHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDL 170

Query: 182 LDNNEELKKAFY--EILEISNDEDIETLISDIISNRTALKL 220
           L  + EL +     E+L   ++E +ETL S  ++N    +L
Sbjct: 171 LALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRL 211


>gi|294814880|ref|ZP_06773523.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327479|gb|EFG09122.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1200

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 41/221 (18%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 18  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 77

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV   +        + +  +                           PG  ++ 
Sbjct: 78  AGELAERVRTALVRAGVTDPDAIDPD-------------------------RPPGEPRIS 112

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIM 181
           T HAF   ++    L   +     +  +    +L  +  +             STL   +
Sbjct: 113 TYHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDL 172

Query: 182 LDNNEELKKAFY--EILEISNDEDIETLISDIISNRTALKL 220
           L  + EL +     E+L   ++E +ETL S  ++N    +L
Sbjct: 173 LALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRL 213


>gi|157825751|ref|YP_001493471.1| DNA helicase II [Rickettsia akari str. Hartford]
 gi|157799709|gb|ABV74963.1| DNA helicase II [Rickettsia akari str. Hartford]
          Length = 653

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM
Sbjct: 11  NPQQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHKNLAPPQNILAVTFTNKAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV  +I  +                                        GL + T H+
Sbjct: 71  AERVNSLINCY----------------------------------------GLNIGTFHS 90

Query: 139 FCEAIMQ--QFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I++     L   + + F I   +   KL+++  K
Sbjct: 91  MAARILRDQSEHLNLGLNNRFTIISHDDQLKLVKDIVK 128


>gi|302669040|ref|YP_003832865.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302397380|gb|ADL36283.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 643

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 52/216 (24%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++   +Q  A+        + A AGSGKT  +  R+  ++ A      +L +T T  AA
Sbjct: 5   LNELNEDQKKAATCIEGPVIILAGAGSGKTRTITYRIAYMIDAGIDTRNILAITFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R      A + L D++L   +                                 T
Sbjct: 65  KEMKER------ALALLDDKVLPPTL--------------------------------TT 86

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+F   IM++  +      +  + D E S K I++  K+          +EL   F ++
Sbjct: 87  FHSFGLTIMRKSGILLGYRKNIQVCDAEDSVKRIKKIVKN------KGFEKELVSQFADM 140

Query: 196 LEISNDE-----DIETLISDIISNRTALKLIFFFFS 226
           +  + D+     DIE  + +  S     K +++ + 
Sbjct: 141 ISRAKDKLLEPSDIE--VYEQGSVYDQFKQVYYAYQ 174


>gi|261252168|ref|ZP_05944741.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891]
 gi|260935559|gb|EEX91548.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891]
          Length = 1205

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP----------STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +  P            +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGSPETKHQVPLTVDQILVVTFTEAATAELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + L+     +    I+      SD  +A  +L+          V TIH FC+ ++
Sbjct: 82  RIHD-ARLAFARGKSSDPVIEPLLDEVSDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 140

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 141 TQNAFESG 148


>gi|215489106|ref|YP_002331537.1| ATP-dependent DNA helicase Rep [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969493|ref|ZP_07783695.1| ATP-dependent DNA helicase Rep [Escherichia coli 2362-75]
 gi|215267178|emb|CAS11626.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312286040|gb|EFR13958.1| ATP-dependent DNA helicase Rep [Escherichia coli 2362-75]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|15833965|ref|NP_312738.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           Sakai]
 gi|168751735|ref|ZP_02776757.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753671|ref|ZP_02778678.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764145|ref|ZP_02789152.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768055|ref|ZP_02793062.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775675|ref|ZP_02800682.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780673|ref|ZP_02805680.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786612|ref|ZP_02811619.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC869]
 gi|168800994|ref|ZP_02826001.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC508]
 gi|193066130|ref|ZP_03047185.1| ATP-dependent DNA helicase Rep [Escherichia coli E22]
 gi|193071046|ref|ZP_03051973.1| ATP-dependent DNA helicase Rep [Escherichia coli E110019]
 gi|194429767|ref|ZP_03062282.1| ATP-dependent DNA helicase Rep [Escherichia coli B171]
 gi|195938066|ref|ZP_03083448.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808178|ref|ZP_03250515.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813347|ref|ZP_03254676.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819670|ref|ZP_03259990.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398850|ref|YP_002273296.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4115]
 gi|209921251|ref|YP_002295335.1| ATP-dependent DNA helicase Rep [Escherichia coli SE11]
 gi|217324229|ref|ZP_03440313.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795776|ref|YP_003080613.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           TW14359]
 gi|260870503|ref|YP_003236905.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O111:H- str. 11128]
 gi|261255598|ref|ZP_05948131.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285193|ref|YP_003502011.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str.
           CB9615]
 gi|293417244|ref|ZP_06659869.1| ATP-dependent DNA helicase Rep [Escherichia coli B185]
 gi|300818753|ref|ZP_07098960.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 107-1]
 gi|300823309|ref|ZP_07103440.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 119-7]
 gi|331660120|ref|ZP_08361056.1| ATP-dependent DNA helicase Rep [Escherichia coli TA206]
 gi|331670623|ref|ZP_08371460.1| ATP-dependent DNA helicase Rep [Escherichia coli TA271]
 gi|331685497|ref|ZP_08386081.1| ATP-dependent DNA helicase Rep [Escherichia coli H299]
 gi|13364186|dbj|BAB38134.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia
           coli O157:H7 str. Sakai]
 gi|187768815|gb|EDU32659.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014262|gb|EDU52384.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001612|gb|EDU70598.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359080|gb|EDU77499.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362630|gb|EDU81049.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365803|gb|EDU84219.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373350|gb|EDU91766.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC869]
 gi|189376792|gb|EDU95208.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC508]
 gi|192926227|gb|EDV80866.1| ATP-dependent DNA helicase Rep [Escherichia coli E22]
 gi|192955633|gb|EDV86109.1| ATP-dependent DNA helicase Rep [Escherichia coli E110019]
 gi|194412179|gb|EDX28486.1| ATP-dependent DNA helicase Rep [Escherichia coli B171]
 gi|208727979|gb|EDZ77580.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734624|gb|EDZ83311.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739793|gb|EDZ87475.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160250|gb|ACI37683.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4115]
 gi|209753538|gb|ACI75076.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209753540|gb|ACI75077.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209753542|gb|ACI75078.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209753544|gb|ACI75079.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209753546|gb|ACI75080.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209914510|dbj|BAG79584.1| DNA helicase Rep [Escherichia coli SE11]
 gi|217320450|gb|EEC28874.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           TW14588]
 gi|222035480|emb|CAP78225.1| ATP-dependent DNA helicase rep [Escherichia coli LF82]
 gi|254595176|gb|ACT74537.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli O157:H7 str. TW14359]
 gi|257766859|dbj|BAI38354.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O111:H- str. 11128]
 gi|290765066|gb|ADD59027.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str.
           CB9615]
 gi|291431012|gb|EFF04007.1| ATP-dependent DNA helicase Rep [Escherichia coli B185]
 gi|300524095|gb|EFK45164.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 119-7]
 gi|300528719|gb|EFK49781.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 107-1]
 gi|312948333|gb|ADR29160.1| ATP-dependent DNA helicase Rep [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315300851|gb|EFU60073.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 16-3]
 gi|320191128|gb|EFW65778.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198514|gb|EFW73115.1| ATP-dependent DNA helicase Rep [Escherichia coli EC4100B]
 gi|320639262|gb|EFX08884.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           G5101]
 gi|320644647|gb|EFX13697.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H- str.
           493-89]
 gi|320649972|gb|EFX18475.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H- str. H
           2687]
 gi|320655318|gb|EFX23260.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660943|gb|EFX28386.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666067|gb|EFX33081.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323161158|gb|EFZ47076.1| ATP-dependent DNA helicase Rep [Escherichia coli E128010]
 gi|323173395|gb|EFZ59024.1| ATP-dependent DNA helicase Rep [Escherichia coli LT-68]
 gi|323189500|gb|EFZ74780.1| ATP-dependent DNA helicase Rep [Escherichia coli RN587/1]
 gi|324016173|gb|EGB85392.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 117-3]
 gi|326344236|gb|EGD67996.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. 1125]
 gi|326347937|gb|EGD71651.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. 1044]
 gi|331052688|gb|EGI24723.1| ATP-dependent DNA helicase Rep [Escherichia coli TA206]
 gi|331062096|gb|EGI34018.1| ATP-dependent DNA helicase Rep [Escherichia coli TA271]
 gi|331077198|gb|EGI48412.1| ATP-dependent DNA helicase Rep [Escherichia coli H299]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|269137454|ref|YP_003294154.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda EIB202]
 gi|267983114|gb|ACY82943.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda EIB202]
 gi|304557528|gb|ADM40192.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda FL6-60]
          Length = 726

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+ +       +  +T T  AA EM  R
Sbjct: 58  QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRVCGYQARHIAAVTFTNKAAREMKER 117

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 118 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 140

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D++    L+ +  +  L      +  +L++    I    ND
Sbjct: 141 EIIKREYKALGMKSNFSLFDDQDQLALLTDLTERWLEK----DKTQLQQLIATISNWKND 196


>gi|260846446|ref|YP_003224224.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O103:H2 str. 12009]
 gi|257761593|dbj|BAI33090.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O103:H2 str. 12009]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|237727902|ref|ZP_04558383.1| ATP-dependent DNA helicase Rep [Citrobacter sp. 30_2]
 gi|226910351|gb|EEH96269.1| ATP-dependent DNA helicase Rep [Citrobacter sp. 30_2]
          Length = 673

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKLILQQLISTISNWKND 145


>gi|225351772|ref|ZP_03742795.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158116|gb|EEG71399.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1377

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 27/166 (16%)

Query: 18  SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P+     V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+
Sbjct: 8   TDSPEQAAVVQAPSYADVVVVAGAGSGKTYTMTRRIITLIEQGVSPEKILGLTFTRKAAS 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +T                            +    L +   T    +V T 
Sbjct: 68  ELLSRVSAAVTR--------------------------DQRERGLKSANMTFLKPEVSTY 101

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            AF ++I++Q+ L      +     E  + +LI       +  +M 
Sbjct: 102 DAFFQSIVRQYGLLVGFDQNTQPLSEAGAMQLIHTVLDRHMDDLMA 147


>gi|317046371|ref|YP_004114019.1| ATP-dependent DNA helicase Rep [Pantoea sp. At-9b]
 gi|316947988|gb|ADU67463.1| ATP-dependent DNA helicase Rep [Pantoea sp. At-9b]
          Length = 673

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM  R
Sbjct: 7   QQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRDCGYQARHIAAVTFTNKASREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S F++ D++    L+++  K  L     ++  +L++    I    ND
Sbjct: 90  EIIKREYAALGMKSTFSLFDDQDQLALLKDLTKQWLE----EDKTQLQQLISTISNWKND 145

Query: 202 E-DIETLISDIISNRTAL 218
             D +  +    S R  +
Sbjct: 146 LVDPQAAVGGAKSQRDQI 163


>gi|94265519|ref|ZP_01289267.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
 gi|93453960|gb|EAT04306.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
          Length = 775

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 38/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++     P     V A AGSGKT  LV R+  L+     P  LL LT T+ AA EM+
Sbjct: 35  NSAQREAVCAPPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMT 94

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R           +  +L     ++ G                            T HA 
Sbjct: 95  AR-----------AGWLLDGSCRRVTG---------------------------GTFHAT 116

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              +++++       ++F+I D+  ++ +I   K S 
Sbjct: 117 ANLLLRRYATRIGYQANFSIIDQSDAEGIINLLKSSL 153


>gi|26250516|ref|NP_756556.1| ATP-dependent DNA helicase Rep [Escherichia coli CFT073]
 gi|218707414|ref|YP_002414933.1| ATP-dependent DNA helicase Rep [Escherichia coli UMN026]
 gi|227888639|ref|ZP_04006444.1| ATP-dependent DNA helicase Rep [Escherichia coli 83972]
 gi|293407408|ref|ZP_06651328.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1412]
 gi|298383148|ref|ZP_06992742.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1302]
 gi|300985811|ref|ZP_07177603.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 45-1]
 gi|301047343|ref|ZP_07194428.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 185-1]
 gi|26110946|gb|AAN83130.1|AE016769_245 ATP-dependent DNA helicase rep [Escherichia coli CFT073]
 gi|218434511|emb|CAR15438.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli UMN026]
 gi|227834478|gb|EEJ44944.1| ATP-dependent DNA helicase Rep [Escherichia coli 83972]
 gi|291425519|gb|EFE98557.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1412]
 gi|298276384|gb|EFI17903.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1302]
 gi|300300760|gb|EFJ57145.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 185-1]
 gi|300407962|gb|EFJ91500.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 45-1]
 gi|307555906|gb|ADN48681.1| rep helicase a single-stranded DNA dependent ATPase [Escherichia
           coli ABU 83972]
 gi|315293139|gb|EFU52491.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 153-1]
 gi|320197590|gb|EFW72202.1| ATP-dependent DNA helicase Rep [Escherichia coli WV_060327]
          Length = 673

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|58616965|ref|YP_196164.1| DNA helicase II [Ehrlichia ruminantium str. Gardel]
 gi|58416577|emb|CAI27690.1| DNA helicase II [Ehrlichia ruminantium str. Gardel]
          Length = 639

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 42/174 (24%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D I+    +Q  A ++      + A AG+GKT  +  R+  +L  N A P+ +L +T T 
Sbjct: 3   DYITSLNEDQKKAVTNINGPILILAGAGTGKTRTITSRIAYILNNNFALPNQILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ E                                        L     + 
Sbjct: 63  KAANEMLSRINE----------------------------------------LTCASNIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           + T HA    I++Q      + S F I   +   ++I+            D  +
Sbjct: 83  LGTFHAIATKILRQHAEAVGLKSDFTIIGTDDQLQVIKTIVNDMHPEYASDAYK 136


>gi|72163277|ref|YP_290934.1| DNA and RNA helicase [Thermobifida fusca YX]
 gi|71917009|gb|AAZ56911.1| DNA and RNA helicase [Thermobifida fusca YX]
          Length = 1050

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 51/230 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +  +D +     ++  A        + A  G+GKT  L  R+  ++       S  L +T
Sbjct: 481 ASLLDGLD--PDQRAAAEHTGGPLLIVAGPGTGKTRTLTHRIAYVVAERGVPASQCLAIT 538

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA E+  R+  ++                                       E   
Sbjct: 539 FTRRAADELRERLHALLG--------------------------------------ERAA 560

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK------KSTLAS---I 180
            + + T+H     I+++    A ++  F IAD+   +++  E        +  LA     
Sbjct: 561 DMTITTLHGLGALILREQYARAGLSPDFTIADDSLRQEIAAEIAGSAGEGRRLLARRETA 620

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
           + +++ E+ + F   L  +N  D   LI   +   +A + +   +   W 
Sbjct: 621 LHEDDAEIAR-FDARLREANLVDFTDLIRLPVRLLSADEELVAHYRSRWP 669


>gi|212639014|ref|YP_002315534.1| Superfamily I helicase domain and RecB family exonuclease domain
           [Anoxybacillus flavithermus WK1]
 gi|212560494|gb|ACJ33549.1| Superfamily I helicase domain and RecB family exonuclease domain
           [Anoxybacillus flavithermus WK1]
          Length = 965

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 34/161 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +   K ++ +         + A  GSGKT  LV+R+  ++   N +P  +L  T T+ AA
Sbjct: 3   VELNKQQKQVVHTTEGPLLIIAGPGSGKTFTLVERIKYIITTKNVNPENILVATFTEKAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +E+  R+   +                                     I      + + T
Sbjct: 63  SELLTRISNRLNE---------------------------------ENISINLNEMYIGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           IH+ C  I+++      +  ++ + D+   + LI +  K  
Sbjct: 90  IHSICLRILEENREYTRLKKNYRVLDQFDQQYLIYQNIKKF 130


>gi|209521793|ref|ZP_03270474.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209497763|gb|EDZ97937.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 471

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 32/173 (18%)

Query: 12  ETIDLISQTKSEQLLASDPT--------RSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +T   +++    Q  A +           +  V A AGSGKT+ L  RV  L++  A P 
Sbjct: 26  DTAAWLAKLNDAQREAVEYGTGTPDALPGALLVIAGAGSGKTNTLAHRVANLVVKGADPQ 85

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT ++ AA EM+ RV                   T+I G     +        L  
Sbjct: 86  RILLLTFSRRAALEMTRRV-------------------TRITGAAAATAGTPSVGTALAQ 126

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            L         T H+    +++++     +   F I D E S  L+   +   
Sbjct: 127 GLT-----WAGTFHSVGARLLREYADLIGLVPAFTINDREDSADLMNLVRHEL 174


>gi|94264521|ref|ZP_01288308.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
 gi|93455080|gb|EAT05307.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
          Length = 771

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 38/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++     P     V A AGSGKT  LV R+  L+     P  LL LT T+ AA EM+
Sbjct: 35  NSAQREAVCAPPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMT 94

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R           +  +L     ++ G                            T HA 
Sbjct: 95  AR-----------AGWLLDGSCRRVTG---------------------------GTFHAT 116

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              +++++       ++F+I D+  ++ +I   K S 
Sbjct: 117 ANLLLRRYATRIGYQANFSIIDQSDAEGIINLLKSSL 153


>gi|288937796|ref|YP_003441855.1| ATP-dependent DNA helicase Rep [Klebsiella variicola At-22]
 gi|288892505|gb|ADC60823.1| ATP-dependent DNA helicase Rep [Klebsiella variicola At-22]
          Length = 673

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145


>gi|120600524|ref|YP_965098.1| ATP-dependent DNA helicase Rep [Shewanella sp. W3-18-1]
 gi|120560617|gb|ABM26544.1| ATP-dependent DNA helicase Rep [Shewanella sp. W3-18-1]
          Length = 670

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + +                             +AR           GL + T
Sbjct: 61  REMKERIAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L     D +++L K+    
Sbjct: 84  FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKSLAST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|171742279|ref|ZP_02918086.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC
           27678]
 gi|283456614|ref|YP_003361178.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|171277893|gb|EDT45554.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC
           27678]
 gi|283103248|gb|ADB10354.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium
           dentium Bd1]
          Length = 1346

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 28/166 (16%)

Query: 18  SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P+     V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+
Sbjct: 8   TDSPEQAAVVQAPSYADVVVVAGAGSGKTYTMTRRIINLIEQGVSPERILGLTFTRKAAS 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   + +          A   K +                           + T 
Sbjct: 68  ELLSRVSAAVVSNQGGRTGSAGAAFLKPE---------------------------ISTY 100

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            AF + I++Q+ L      +     E  + +LI       +  IM 
Sbjct: 101 DAFFQTIVRQYGLLVGFDQNTQPLSEAGAMQLIYAVLDKHMDEIMR 146


>gi|91790119|ref|YP_551071.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91699344|gb|ABE46173.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 716

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 38/151 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++Q   +       V A AGSGKT ++  ++ RL+ +      +  +T T  AAAEM  R
Sbjct: 28  AQQEAVNYLHGPCLVLAGAGSGKTRVITHKIGRLIQSGLKAEQIAAITFTNKAAAEMRER 87

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              +I   +                                       G+ + T HA   
Sbjct: 88  AKSLIGKQAK--------------------------------------GVLICTFHALGV 109

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            +++Q      +   F+I D +    ++++A
Sbjct: 110 RMLRQDGQALGLKQQFSILDSDDVTSILKDA 140


>gi|290513192|ref|ZP_06552554.1| ATP-dependent DNA helicase Rep [Klebsiella sp. 1_1_55]
 gi|289774403|gb|EFD82409.1| ATP-dependent DNA helicase Rep [Klebsiella sp. 1_1_55]
          Length = 673

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145


>gi|206577442|ref|YP_002241158.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae 342]
 gi|206566500|gb|ACI08276.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae 342]
          Length = 673

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145


>gi|157828499|ref|YP_001494741.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933219|ref|YP_001650008.1| DNA helicase II [Rickettsia rickettsii str. Iowa]
 gi|157800980|gb|ABV76233.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908306|gb|ABY72602.1| DNA helicase II [Rickettsia rickettsii str. Iowa]
          Length = 653

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM
Sbjct: 11  NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV  +I  +                                        GL + T H+
Sbjct: 71  AERVNSLINCY----------------------------------------GLNIGTFHS 90

Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
               I++     L   + + F I   +   KL+++  K
Sbjct: 91  MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128


>gi|157964534|ref|YP_001499358.1| DNA helicase II [Rickettsia massiliae MTU5]
 gi|157844310|gb|ABV84811.1| DNA helicase II [Rickettsia massiliae MTU5]
          Length = 653

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM
Sbjct: 11  NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV  +I  +                                        GL + T H+
Sbjct: 71  AERVNSLINCY----------------------------------------GLNIGTFHS 90

Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
               I++     L   + + F I   +   KL+++  K
Sbjct: 91  MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128


>gi|310780023|ref|YP_003968355.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
 gi|309749346|gb|ADO84007.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
          Length = 1041

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 80/190 (42%), Gaps = 11/190 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L    +  LL   +   ++ LT T+ A  E+  R+L  +   +   +
Sbjct: 6   ILKASAGTGKTYRLSLEYIASLLLGENFQEIMVLTFTRKATGEIRERILSFLKEITTDGE 65

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEANI 153
           +         +       D  K   +   I++    LK+ TI +F   I ++       I
Sbjct: 66  DAQEIVENIKKLYPDLVVDTEKLVDVYSEIMKNKDRLKIHTIDSFTNIIFKKSIAPSLGI 125

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLISD 210
              + I D++++K    +  +  L        +   ++F + L  + ++DIE    LI +
Sbjct: 126 -YSYEIIDDDRNKDFHLKILEKLLEK------KTYFESFKDFLYENAEKDIEAYLKLIKN 178

Query: 211 IISNRTALKL 220
           I++ R    L
Sbjct: 179 ILNERWKFLL 188


>gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 837

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 44/224 (19%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D  +    ++ +     ++  V A AG+GKT ++  R   L+     P  +LCLT T  A
Sbjct: 5   DYRALNNEQKQVVDTLDQNLLVLAPAGTGKTKVIALRTAYLVQHQQEPEKILCLTFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   I                                       E    + ++
Sbjct: 65  AKEMKERIQLYIP--------------------------------------EQIKKMTIK 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+FC  ++      ++ +    + DE  S  +IE+  ++   +      +++   F  
Sbjct: 87  TFHSFCYHLINHEKENSHFSFPCTLIDEADSLAIIEKIIQTNKLNDDSVYYQQIISFFEN 146

Query: 195 ILEISNDEDIET------LISDIISNRTALKLIFFFFSYLWRRK 232
           I   S    +E       ++ D   ++  L  +       + R+
Sbjct: 147 IKRHSLTFPLEERYHYKMIVEDYFKSQDQLGQLGRRREDSFLRR 190


>gi|255726244|ref|XP_002548048.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240133972|gb|EER33527.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 935

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 43/229 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
             ++ +++ + E +  S       + A  G+GKT +LV RV  LL +    P  ++  T 
Sbjct: 11  RILESLNENQREAVT-SPCNGRLQIIAGPGTGKTKVLVSRVAHLLIVDKVRPDNMIVTTF 69

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TK AA EM+ R+  ++   +   D+++                                 
Sbjct: 70  TKKAANEMTDRLHRLLAGTNISVDKLI--------------------------------- 96

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK----STLASIMLDNNE 186
             + T H+ C  I++++     +  H  IADE   + ++++       S L  +   ++ 
Sbjct: 97  --IGTFHSVCYRIIKRYGKFLGLEKH-TIADETDKRSIMKKIISGLQPSELTMLQRMSSA 153

Query: 187 ELKKAFY-EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
              +    ++L    D D++++   I S ++    +  +     R K +
Sbjct: 154 TTSQFTSGKVLNSYKDFDLDSISKQISSLKSKAISLEAYAKSPKRNKAL 202


>gi|262166384|ref|ZP_06034121.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223]
 gi|262026100|gb|EEY44768.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223]
          Length = 1208

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|229586731|ref|YP_002845232.1| DNA helicase II [Rickettsia africae ESF-5]
 gi|228021781|gb|ACP53489.1| DNA helicase II [Rickettsia africae ESF-5]
          Length = 653

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM
Sbjct: 11  NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV  +I  +                                        GL + T H+
Sbjct: 71  AERVNSLINCY----------------------------------------GLNIGTFHS 90

Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
               I++     L   + + F I   +   KL+++  K
Sbjct: 91  MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128


>gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
 gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
          Length = 862

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 44/212 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + +Q +  +  ++  + A+AG+GKT+ L  RV  L+  + A    +LC+T T  AA EM
Sbjct: 4   NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGDYAKAENILCMTFTNKAANEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++ + +   +                                      V T H+
Sbjct: 64  KGRIQSLVGSPAKAVE--------------------------------------VSTFHS 85

Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           FC  I+QQ       + +   I DEE  K+L E  +   L  +   N   + K +  +  
Sbjct: 86  FCFFILQQEGKRNETLYTDVTIFDEEDCKELFEPYRPGKLREMSFANVIAMVKEYRSLYG 145

Query: 198 ISNDE---DIETLISDI-ISNRTALKLIFFFF 225
             +D+   D +  I  +    R A++  F  F
Sbjct: 146 FYSDDLLGDYKRTIERLQKEQREAIEQQFSSF 177


>gi|262375119|ref|ZP_06068353.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145]
 gi|262310132|gb|EEY91261.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145]
          Length = 1367

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 79/190 (41%), Gaps = 21/190 (11%)

Query: 23  EQLLASDPTRSA------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ ++++P +        W+ A+AG+GKT+ L   ++R+ L   +P  ++  T T+ A A
Sbjct: 2   QKAISTNPIQDMKFRGLHWIEASAGTGKTYTLSSLMVRIFLDQYYPHQVIATTFTRKATA 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-------------MSKARHLLIT 123
           E+ +RV   +                +I  K  N++D             +  AR  L  
Sbjct: 62  ELKNRVRLRVEETLAYIQRHQQLNSVEITAKIQNETDPLFQQVLKDYGSRLDYARRRLRL 121

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           +L     L V T+ +F + ++++F  E+       + +++     I++     L   +  
Sbjct: 122 VLNQLDELFVGTLDSFSQKLLREFAFESGKIERAELTEDQD--LYIQQLIHDVLRDWIQQ 179

Query: 184 NNEELKKAFY 193
             + +    Y
Sbjct: 180 QPQYMVNHLY 189


>gi|260222507|emb|CBA32139.1| ATP-dependent DNA helicase rep [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 709

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 38/153 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             ++Q   +       V A AGSGKT ++  ++ RL+      + +  +T T  AAAEM 
Sbjct: 11  NPAQQEAVNYLHGPCLVLAGAGSGKTRVITHKIARLIQMGMPANRIAAITFTNKAAAEMR 70

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                                   A+HL+    +    + V T HA 
Sbjct: 71  ER-----------------------------------AKHLIGKAAKD---VVVCTFHAL 92

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
              ++++      +   F+I D +    +I++A
Sbjct: 93  GVRMLREDGAVLGLKPQFSILDSDDVTSIIKDA 125


>gi|297580957|ref|ZP_06942882.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385]
 gi|297534783|gb|EFH73619.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385]
          Length = 1208

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|292486654|ref|YP_003529524.1| ATP-dependent DNA helicase RepA [Erwinia amylovora CFBP1430]
 gi|292897891|ref|YP_003537260.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197739|emb|CBJ44834.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291552071|emb|CBA19108.1| ATP-dependent DNA helicase RepA [Erwinia amylovora CFBP1430]
 gi|312170720|emb|CBX78982.1| ATP-dependent DNA helicase RepA [Erwinia amylovora ATCC BAA-2158]
          Length = 672

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  A+ EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQPRHIAAVTFTNKASREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D++    L+++  +  L     ++   L++    I    ND
Sbjct: 90  EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEQWLE----NDKNLLQQLVSTISNWKND 145

Query: 202 E-DIETLISDIISNRTAL 218
             D     +  +S R  L
Sbjct: 146 LMDPSRAAAGALSERDRL 163


>gi|258627298|ref|ZP_05722082.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603]
 gi|258580336|gb|EEW05301.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603]
          Length = 1208

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|227357186|ref|ZP_03841555.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
 gi|227162718|gb|EEI47685.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
          Length = 679

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 38/158 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      +    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 13  QQKAVEYVSGPCLVLAGAGSGKTRVITNKIAYLIRQCRYSAKQIAAVTFTNKAAREMKER 72

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                                       +   GL + T H    
Sbjct: 73  VAQTLGK-------------------------------------QEAKGLMISTFHTLGL 95

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            I+++      I S+F++ D++    L++E     L  
Sbjct: 96  EIIKREYKALGIKSNFSLFDDQDQSALLKELTVDLLEE 133


>gi|330891622|gb|EGH24283.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 1230

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|320095790|ref|ZP_08027434.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977274|gb|EFW08973.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 1196

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 33/204 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAA 75
           + T  +  +   P R   V A AGSGKT  +  RVL L+  +    PS++L LT T+ AA
Sbjct: 32  TPTDEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLVANHEDIAPSSVLGLTFTRKAA 91

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+ + +   +                         +   L   + E P  L   T
Sbjct: 92  GELGDRLRQRLALLA------------------------RRVPSLRERLDEDPVSL---T 124

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            ++F E I+ +  +   I   F +  E  +  L+ +  +     +  D +     A    
Sbjct: 125 YNSFAERIVAEHGMRIGIDPDFTMLTEAGAVDLMTQIVEGWPTDL--DEDLSPSAAVGHC 182

Query: 196 LEISNDEDIETLISDIISNRTALK 219
           L ++ +        +    R AL+
Sbjct: 183 LHLAGEVGEHGYTVE--EARDALE 204


>gi|298245873|ref|ZP_06969679.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297553354|gb|EFH87219.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 1233

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 41/154 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82
           Q  A +    A + A  GSGKT  L+ R+  ++      P+ +L LT ++ AA EM  R+
Sbjct: 263 QQAAIEAPTPALIVAGPGSGKTSTLIGRIEYMVHTLQVPPAQILALTFSRKAAQEMEERL 322

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            +++T                                            KV T HAFC  
Sbjct: 323 AQVLTRQLP----------------------------------------KVSTFHAFCAD 342

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           +++++     +   F + DE +   L+ +   S 
Sbjct: 343 LLRRYGELVGLRPGFTLLDEAEGYFLLRQLSHSM 376


>gi|260774508|ref|ZP_05883422.1| ATP-dependent DNA helicase Rep [Vibrio metschnikovii CIP 69.14]
 gi|260610635|gb|EEX35840.1| ATP-dependent DNA helicase Rep [Vibrio metschnikovii CIP 69.14]
          Length = 672

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNSRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKDRVGQTLGKAESR-------------------------------------GLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++    L++E  +S L      + + L++    I
Sbjct: 84  FHTLGLTIIRREYKALGLKPGFSLFDDQDQLALLKELTESQLE----GDKDLLRQLLSTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|71893767|ref|YP_279213.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J]
          Length = 748

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 55/239 (23%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++ Q   +Q +A     S   + A AG+GKT +L +++  ++  + A+PS +L LT T  
Sbjct: 1   MLLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM +RV +++   S                                        +++
Sbjct: 61  AAEEMRNRVEKLVGEKSK--------------------------------------DIQI 82

Query: 134 QTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            T H+ C  I++          E  +    F I DE+  KK++E+     L     D +E
Sbjct: 83  LTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRDE 141

Query: 187 ELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
               AF  I  ISN    ++  E L+  I +    +K+  +     +  K  E ++   
Sbjct: 142 TKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 197


>gi|323491621|ref|ZP_08096800.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546]
 gi|323314197|gb|EGA67282.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546]
          Length = 1205

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP----------STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +  P            +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGSPETKHQVPLTVDQILVVTFTEAATAELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S +   IQ      SD  +A  +L+          V TIH FC+ ++
Sbjct: 82  RIHDARLAFARGQSGDPV-IQPLLEEVSDHKQAADILLQAERQMDEAAVYTIHGFCQRML 140

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 141 TQNAFESG 148


>gi|254525779|ref|ZP_05137831.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221537203|gb|EEE39656.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 1208

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L          
Sbjct: 14  LVEASAGTGKSFTLSHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKILSRFHNLKLYL 73

Query: 94  DEILSAEI-TKIQGKKPNKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQFP 148
                 +I   ++    N  D  K++  +I+     +     LKV T HAFC  I+ ++ 
Sbjct: 74  QSHNEIKIDNTLKDWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDEYS 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +E  +T    I +   +  L ++   +      L+ N EL
Sbjct: 134 IEIGLTQDPYIENNIDN--LYKDVIDNLWIDDFLNLNHEL 171


>gi|212716229|ref|ZP_03324357.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660741|gb|EEB21316.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1398

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 27/166 (16%)

Query: 18  SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P+     V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+
Sbjct: 8   TDSPEQAAVIQAPSYEDVVVVAGAGSGKTYTMTRRIITLIEQGVSPEKILGLTFTRKAAS 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   ++                           ++    L +   T    +V T 
Sbjct: 68  ELLSRVSAAVSR--------------------------NQRERGLKSANMTFLKPEVSTY 101

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            AF ++I++Q+ L      +     E  + +LI       +  +M 
Sbjct: 102 DAFFQSIVRQYGLLVGFDQNTQPLSEAGAMQLIHTVLDKHMVDLMA 147


>gi|298488371|ref|ZP_07006402.1| Exodeoxyribonuclease V beta chain [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156996|gb|EFH98085.1| Exodeoxyribonuclease V beta chain [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1230

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTERSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|72080737|ref|YP_287795.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448]
          Length = 748

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 55/239 (23%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           ++ Q   +Q +A     S   + A AG+GKT +L +++  ++  + A+PS +L LT T  
Sbjct: 1   MLLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM +RV +++   S                                        +++
Sbjct: 61  AAEEMRNRVEKLVGEKSK--------------------------------------DIQI 82

Query: 134 QTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            T H+ C  I++          E  +    F I DE+  KK++E+     L     D +E
Sbjct: 83  LTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRDE 141

Query: 187 ELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
               AF  I  ISN    ++  E L+  I +    +K+  +     +  K  E ++   
Sbjct: 142 TKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 197


>gi|254225834|ref|ZP_04919438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51]
 gi|125621648|gb|EAZ49978.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51]
          Length = 1208

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASEDLLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|301060341|ref|ZP_07201204.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2]
 gi|300445537|gb|EFK09439.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2]
          Length = 1223

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 14/200 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRL+L +           P  +L +T T AA  E+ HR+ + 
Sbjct: 17  LIEASAGTGKTYTIGALYLRLVLGHGGKNGFHRALMPPEILVVTFTNAATEELRHRIRQK 76

Query: 86  ITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +   +   +     +  +  + G  P  S   KAR L  + L       + TIH++   +
Sbjct: 77  LVEAAGYFNGTCKGDGFLEGLAGAFPKASWPEKARVLEQSSL-WMDEAAIHTIHSWSSRM 135

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           ++Q        S F +      + L+EEA      S +             +++ S  E 
Sbjct: 136 LRQHAFLCG--SLFDLELAPDDENLLEEAACDYWRSHLYHLPPRQLADLLALIQCSTPEA 193

Query: 204 IETLISDIISNRTALKLIFF 223
           +   +  I+     L+   F
Sbjct: 194 LLDRVRPILRRDPLLEGDPF 213


>gi|152972769|ref|YP_001337915.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892380|ref|YP_002917114.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae NTUH-K2044]
 gi|330012126|ref|ZP_08307288.1| ATP-dependent DNA helicase Rep [Klebsiella sp. MS 92-3]
 gi|150957618|gb|ABR79648.1| Rep helicase, a single-stranded DNA-dependent ATPase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238544696|dbj|BAH61047.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328533941|gb|EGF60600.1| ATP-dependent DNA helicase Rep [Klebsiella sp. MS 92-3]
          Length = 673

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145


>gi|90413496|ref|ZP_01221487.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK]
 gi|90325428|gb|EAS41911.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK]
          Length = 1227

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 14/178 (7%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--- 61
           NS   + + +D  +     Q +      +  + A+AG+GKT  +    LRLLL + +   
Sbjct: 13  NSSDLNHQPMDSANTPTKLQPMTFPLHGARLIEASAGTGKTFTIASLYLRLLLGHGNAET 72

Query: 62  -------PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
                     +L +T T+AA AE+  R+   I           S +   I+      SD 
Sbjct: 73  RHASELTVDQILVVTFTEAATAELRDRIRARIHDAQIAFCRGFSNDPV-IEPLLTAISDH 131

Query: 115 SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIE 170
             A  +L+          + TIH FC+ ++ Q   E+     + F + DE Q K L+ 
Sbjct: 132 KAAAQILLNAERQMDEAAIYTIHGFCQRMLTQNAFESGSRFNNEF-VTDESQLKSLVA 188


>gi|146294682|ref|YP_001185106.1| ATP-dependent DNA helicase Rep [Shewanella putrefaciens CN-32]
 gi|145566372|gb|ABP77307.1| ATP-dependent DNA helicase Rep [Shewanella putrefaciens CN-32]
          Length = 670

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + +                             +AR           GL + T
Sbjct: 61  REMKERIAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L     D +++L K+    
Sbjct: 84  FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKSLAST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|213423081|ref|ZP_03356099.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 222

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|319427918|gb|ADV55992.1| ATP-dependent DNA helicase Rep [Shewanella putrefaciens 200]
          Length = 670

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + +                             +AR           GL + T
Sbjct: 61  REMKERIAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L     D +++L K+    
Sbjct: 84  FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKSLAST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|283852071|ref|ZP_06369345.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283572461|gb|EFC20447.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 1062

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 39/227 (17%)

Query: 34  AWVSANAGSGKTHILVQRVLRL---------------LLANAHPSTLLCLTHTKAAAAEM 78
             V A+AGSGKTH L +R + L               L A      ++ +T T  AAAEM
Sbjct: 3   IQVKASAGSGKTHALTERFIALALGTKGNLPRICADSLEAGYALPEIMAVTFTNKAAAEM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +   +             +     + +  +KAR  L  +L     L ++TI +
Sbjct: 63  RERVFHRLKTMA-------------LGLGGTDPASRAKARDELEELLIHAERLNIRTIDS 109

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS--KKLIEEAKKST-----LASIMLDNNEELKKA 191
               + + F LE  +   F  A ++ +    L +    S      L+ +  +    L + 
Sbjct: 110 LLFLLARAFALELGLRPDFEPAFDDSAILADLYDRLAASLPEDPALSRLFGEAQAALLQG 169

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
               L +      E L++  ++ R  ++ +         R  +E+ L
Sbjct: 170 VTGFLPMDRFR--ERLMA--VAGRLLVEPLGHAADADALRLGLERRL 212


>gi|297157455|gb|ADI07167.1| ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 1221

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 13/160 (8%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 16  GIPFTPEQIACITAPPSPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+S RV + +        + +         +     + +             G   + 
Sbjct: 76  AGELSERVRKALVKAGVTDPDPVPPPAGAQAPEAAQAPETA------------AGEPNIS 123

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T HAF   ++++  L   +     +  +    +L     +
Sbjct: 124 TYHAFAGQLLKEHGLRIGLEPGARLLADATRFQLAARVLR 163


>gi|34580461|ref|ZP_00141941.1| DNA helicase II [Rickettsia sibirica 246]
 gi|28261846|gb|EAA25350.1| DNA helicase II [Rickettsia sibirica 246]
          Length = 653

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM
Sbjct: 11  NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV  ++  +                                        GL + T H+
Sbjct: 71  AERVNSLVNCY----------------------------------------GLNIGTFHS 90

Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
               I++     L   + + F I   +   KL+++  K
Sbjct: 91  MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128


>gi|238650278|ref|YP_002916130.1| DNA helicase II [Rickettsia peacockii str. Rustic]
 gi|238624376|gb|ACR47082.1| DNA helicase II [Rickettsia peacockii str. Rustic]
          Length = 653

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM
Sbjct: 11  NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV  +I  +                                        GL + T H+
Sbjct: 71  AERVNSLINCY----------------------------------------GLNIGTFHS 90

Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
               I++     L   + + F I   +   KL+++  K
Sbjct: 91  MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128


>gi|296105331|ref|YP_003615477.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059790|gb|ADF64528.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 674

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|294155500|ref|YP_003559884.1| ATP-dependent DNA helicase [Mycoplasma crocodyli MP145]
 gi|291600036|gb|ADE19532.1| ATP-dependent DNA helicase [Mycoplasma crocodyli MP145]
          Length = 724

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           I+LI    ++Q  A         + A AG+GKT +L +++  L+      P  +L +T T
Sbjct: 6   INLIKDLNTQQAEAVKYFDTHLRIIAGAGAGKTKVLTRKIAYLINEMGVLPRQILAVTFT 65

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A  EM  RV +  +                                       +   +
Sbjct: 66  NKACKEMYQRVAQYCST--------------------------------------SIHQI 87

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T HAFC  I+++        + F I DE     +++   K  
Sbjct: 88  NIFTFHAFCGHILRREAALLGYKNDFQIIDEADKTMILKNIYKDL 132


>gi|257488080|ref|ZP_05642121.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013532|gb|EGH93588.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 1230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|307299290|ref|ZP_07579091.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915086|gb|EFN45472.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 652

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 40/174 (22%)

Query: 8   QEHSETIDLISQ-TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            + SE    +++    EQL A  + +  + + A  GSGKT ++  ++  L+  + +P  +
Sbjct: 6   LKSSEIPGFLTEGLDEEQLKAVIESSGRSLIVAGPGSGKTRVITYKIAHLVSNSINPQNI 65

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T+AA+ EM  R   +  +                                     
Sbjct: 66  LLVTFTRAASREMIDRARRVSGS------------------------------------- 88

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               G+   T H  C   ++++   A +  +F I D E +K LI+  +   L  
Sbjct: 89  -NLKGMLSGTFHHVCNYFLRKYAKAAGLAENFTILDREDAKDLIKHCRTELLEE 141


>gi|261225551|ref|ZP_05939832.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli O157:H7 str. FRIK2000]
          Length = 237

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + ++F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      ++    R  +
Sbjct: 146 LKTPAQAAAEAKGERDRI 163


>gi|258620942|ref|ZP_05715976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573]
 gi|258586330|gb|EEW11045.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573]
          Length = 1208

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|239947646|ref|ZP_04699399.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921922|gb|EER21946.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 653

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM
Sbjct: 11  NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV  +I  +                                        GL + T H+
Sbjct: 71  AERVNSLINCY----------------------------------------GLNIGTFHS 90

Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
               I++     L   + + F I   +   KL+++  K
Sbjct: 91  MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128


>gi|330962479|gb|EGH62739.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 1230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + + A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIPAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|262040910|ref|ZP_06014136.1| ATP-dependent helicase PcrA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041799|gb|EEW42844.1| ATP-dependent helicase PcrA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 673

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145


>gi|262170720|ref|ZP_06038398.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451]
 gi|261891796|gb|EEY37782.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451]
          Length = 1208

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    ++E   ++      +D S A  LL+          + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|258406127|ref|YP_003198869.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798354|gb|ACV69291.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 714

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 44/205 (21%)

Query: 11  SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            + I+        QL A         V A AGSGKT  +V R+ RL+  +  P ++L LT
Sbjct: 1   MDHIEYERHLNQAQLEAVQTLQGPVLVIAGAGSGKTRTVVYRLARLVENSVPPESILLLT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA EM                                   +++A HL    L    
Sbjct: 61  FTRKAANEM-----------------------------------LTRAAHLAGQGLHGVA 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           G    T HAF   ++++F          +I D   ++ ++++ ++  +  +   +    +
Sbjct: 86  G---GTFHAFAFGMLRRFGQRLGYDQGVSIMDRSDAEGVVKQVRE--MEGVGKGDRSFPR 140

Query: 190 K-AFYEILEISNDEDIETLISDIIS 213
           K A   ++  + ++  E  + DI++
Sbjct: 141 KGAVLSLMSKARNK--ERDLEDILA 163


>gi|88797062|ref|ZP_01112652.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297]
 gi|88779931|gb|EAR11116.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297]
          Length = 1130

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92
            + A+AG+GKT+ +V+  LRLLL        +L +T TKAA AE+ +R+   +     + 
Sbjct: 22  LIEASAGTGKTYNIVRIYLRLLLEKELTVDQILVMTFTKAATAEIRNRLSAFLREALQIW 81

Query: 93  -SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            +      +          + D  KAR  +   L       + TIH FC+  + Q    +
Sbjct: 82  ETQNYRDDKERAFYETIRRRVDPEKARLQMRQALLQLDEAAIYTIHGFCKRALSQQAFFS 141

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
            ++  F    E  S++L+ +A +     I   +
Sbjct: 142 GLS--FHANMEADSQELMLQATQDWYRRIQQAD 172


>gi|320008691|gb|ADW03541.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 1174

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 31/184 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 26  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV   + A      ++L  +                           PG   + 
Sbjct: 86  AGELAERVRRALVAAGVTDPDVLDPD-------------------------NPPGEPSIS 120

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +             L ++F  
Sbjct: 121 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----APGPYPALTRSFPT 175

Query: 195 ILEI 198
           ++  
Sbjct: 176 LVSD 179


>gi|320540197|ref|ZP_08039852.1| DNA helicase and single-stranded DNA-dependent ATPase [Serratia
           symbiotica str. Tucson]
 gi|320029863|gb|EFW11887.1| DNA helicase and single-stranded DNA-dependent ATPase [Serratia
           symbiotica str. Tucson]
          Length = 674

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 45/202 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIHHCGYQARHIAAVTFTNKAAHEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV++ +                             +AR           GL + T H 
Sbjct: 64  KERVVQTMGR--------------------------KEAR-----------GLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      +  HF++ D++    L+++     L    L+N++ L       +  
Sbjct: 87  LGLEIIKREYAVLEMKPHFSLFDDQDQLALLKD-----LTEKWLENDKTLVAQLISTISH 141

Query: 199 SNDEDIE--TLISDIISNRTAL 218
             ++ I+    I+   S R  L
Sbjct: 142 WKNDLIDPTQAIALAHSERDKL 163


>gi|319947958|ref|ZP_08022138.1| UvrD/REP helicase [Dietzia cinnamea P4]
 gi|319438386|gb|EFV93326.1| UvrD/REP helicase [Dietzia cinnamea P4]
          Length = 1140

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 30/207 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           +    +   + +D   + +V A AG+GKT+ LV+R+  LLL +A P   +  +T T+ AA
Sbjct: 4   LPDQAARDRVETDTAATLFVEAGAGTGKTYALVRRLSTLLLDDAVPIDRIAAITFTEKAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+   +       D                              L       + T
Sbjct: 64  AELRDRLRVHLVERRAEGD------------------------TRADKALAGLDTAAIGT 99

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-----LDNNEELKK 190
           +H+F   ++ + PLEA I        +      +E   +     +       + +  L +
Sbjct: 100 LHSFALRLLSENPLEAGIPPKVTAQQDTAEAAAVEALWQECATVLFGSGPTAERSGNLAR 159

Query: 191 AFYEILEISNDEDIETLISDIISNRTA 217
           A  ++L+          + + +     
Sbjct: 160 AVDDMLDAGVGARAFRGVVEALHRDWD 186


>gi|197287123|ref|YP_002152995.1| ATP-dependent DNA helicase Rep [Proteus mirabilis HI4320]
 gi|194684610|emb|CAR46496.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320]
          Length = 673

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 38/158 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      +    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQKAVEYVSGPCLVLAGAGSGKTRVITNKIAYLIRQCRYSAKQIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                                       +   GL + T H    
Sbjct: 67  VAQTLGK-------------------------------------QEAKGLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            I+++      I S+F++ D++    L++E     L  
Sbjct: 90  EIIKREYKALGIKSNFSLFDDQDQSALLKELTVDLLEE 127


>gi|13358064|ref|NP_078338.1| DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762416|ref|YP_001752584.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920094|ref|ZP_02931516.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|183508498|ref|ZP_02958027.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701747|ref|ZP_02971434.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|11267430|pir||D82883 DNA helicase II UU501 [imported] - Ureaplasma urealyticum
 gi|6899500|gb|AAF30913.1|AE002148_5 DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827993|gb|ACA33255.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902450|gb|EDT48739.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|182675926|gb|EDT87831.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701018|gb|EDU19300.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 743

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 72/215 (33%), Gaps = 59/215 (27%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ID     + ++   +       V A AG+GKT +L  R+  L+   N HPS +L  T T 
Sbjct: 5   IDYSRLNQEQKEAVTADLGPQLVIAGAGTGKTSVLTLRIAYLITEKNIHPSRILGFTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV + I                                              
Sbjct: 65  KAADEMKERVGKTIGVSIPYL--------------------------------------- 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST---------------- 176
             T H+ C  I+QQ     N  ++  I D +  + L++E                     
Sbjct: 86  -STFHSMCVKILQQDIHYLNYHNNIKIIDTDDQEVLLKEIFDQLNIEKKSQVIKKIIKTI 144

Query: 177 --LASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
             + +   D N+ L +  ++ LE+ +  D + L+ 
Sbjct: 145 SKVKNKFFDQNDMLNEKNHKYLELVDLNDAQRLVD 179


>gi|302188703|ref|ZP_07265376.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           syringae 642]
          Length = 1230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++ + S        L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFDASLWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|320326111|gb|EFW82168.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 1230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|71735593|ref|YP_272988.1| exodeoxyribonuclease V subunit beta [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556146|gb|AAZ35357.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 1230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEHSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|295095198|emb|CBK84288.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 674

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|289624489|ref|ZP_06457443.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330870390|gb|EGH05099.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 1230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|289649175|ref|ZP_06480518.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 1230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|94312409|ref|YP_585619.1| ATP-dependent DNA helicase Rep [Cupriavidus metallidurans CH34]
 gi|93356261|gb|ABF10350.1| DNA helicase and single-stranded DNA-dependent ATPase [Cupriavidus
           metallidurans CH34]
          Length = 695

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 32/157 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  +T T  A
Sbjct: 4   GLNSAQSEAVRYFD--GPCLVLAGAGSGKTRVITQKIAHLIEDKGFEPRHIAAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++   +    + +  +                              L V 
Sbjct: 62  AKEMQERIGKLMEGKTTREGKRIPLK-----------------------------QLTVC 92

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++       +   F+I D +    L++E
Sbjct: 93  TFHSLGVQILRMEAEHLGLKPQFSIMDSDDCFGLVQE 129


>gi|330941258|gb|EGH44122.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 1230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++   S        L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|320330698|gb|EFW86674.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 1230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|328947216|ref|YP_004364553.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328447540|gb|AEB13256.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 736

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 43/163 (26%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           D +S    EQ  A +   S   + A AGSGKT ++  ++  ++     +P+++L +T TK
Sbjct: 5   DYLSVLNKEQREAVEHEGSPLLILAGAGSGKTRVITTKIAYMISELGINPASILAVTFTK 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R + +                                               
Sbjct: 65  KAAEEMKERAINLEPRAQKS---------------------------------------H 85

Query: 133 VQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAK 173
           ++T H+F    ++    ++ I   ++F + D++ +  LI +A 
Sbjct: 86  IRTFHSFGAWFLRLCAEDSGIGIQNNFTVYDDDDACSLISKAV 128


>gi|213582501|ref|ZP_03364327.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 486

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|109898077|ref|YP_661332.1| exodeoxyribonuclease V, beta subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700358|gb|ABG40278.1| DNA helicase/exodeoxyribonuclease V, beta subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 1320

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA----HPSTLLCLTHTKAAAAEMSHRVLEIIT-AW 89
            + A+AG+GKT+ +V   LRLLL +         +L +T T AA AE+  R+ + +  A+
Sbjct: 16  LIEASAGTGKTYTIVNLYLRLLLGDECTPLSVDKILVVTFTNAATAELKQRIRQRLQRAY 75

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 + S + T+   ++ +  ++   R LL   ++      V TIH FC+ ++     
Sbjct: 76  LDFYAGVSSDDFTQYLIERSDNIELDCHRLLL--AIKQMDDAAVYTIHGFCQRMLSLHAF 133

Query: 150 EANITSHFA-IADEEQSKKL 168
           E+      + + DE Q  KL
Sbjct: 134 ESGAMYEQSLVLDESQWLKL 153


>gi|332039001|gb|EGI75430.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624]
          Length = 714

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 38/151 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++Q   +       V A AGSGKT ++  ++ RL+ A   P  +  +T T  AAAEM  R
Sbjct: 8   AQQDAVNHLHGPCLVLAGAGSGKTRVITHKIGRLIQAGLEPQRITAITFTNKAAAEMRER 67

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              +I   +                                        +++ T HA   
Sbjct: 68  TKGLIGRDAK--------------------------------------KVRICTFHALGV 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            +++       + ++F+I D +    ++++A
Sbjct: 90  HLLRGDGEALGLKANFSIMDSDDVTSILKDA 120


>gi|283834549|ref|ZP_06354290.1| ATP-dependent DNA helicase Rep [Citrobacter youngae ATCC 29220]
 gi|291069679|gb|EFE07788.1| ATP-dependent DNA helicase Rep [Citrobacter youngae ATCC 29220]
          Length = 673

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DVIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKLILQQLISTISNWKND 145


>gi|149194062|ref|ZP_01871160.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2]
 gi|149136015|gb|EDM24493.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2]
          Length = 677

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 38/185 (20%)

Query: 11  SETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           SE +D + +    Q   A+    +  + A AGSGKT  L  R+  LL     P+  L LT
Sbjct: 13  SEKMDFLEELNEAQKKAATHIDGALLILAGAGSGKTKTLTSRLAYLLSLGIDPANTLTLT 72

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA+EM  R L +I         +L                                
Sbjct: 73  FTNKAASEMRERALSLIQQNIPHPPLLL-------------------------------- 100

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                T H F    ++ +    N  ++F I D +  KK+++        + M     + K
Sbjct: 101 -----TFHKFGLLFLKLYIHLINRDNNFVIIDSDDQKKILKSISADLPPNFMSKEISKYK 155

Query: 190 KAFYE 194
            +F  
Sbjct: 156 NSFLT 160


>gi|324007448|gb|EGB76667.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 57-2]
          Length = 673

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E     +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTDGLIE----DDKLILQQLISTISNWKND 145


>gi|304390836|ref|ZP_07372788.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325719|gb|EFL92965.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 1191

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 11/196 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T+ +  + + P     V A AGSGKT  +  R++  ++     P  +L LT T+ AAAE
Sbjct: 25  PTREQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAE 84

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILE---TPGGLK 132
           M+ R    +  ++ L + +     T       K    D+++ R    T+++   TP  L+
Sbjct: 85  MAARFSLRLDRFASLLESVQERRQTAEVNAVLKAADFDLNQLRQRFDTLVQRGMTPEMLR 144

Query: 133 ----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               V T  ++   ++ +F       S F    +    +++ +  +S   ++      E 
Sbjct: 145 HPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGEN 204

Query: 189 KKAFYE-ILEISNDED 203
            +     +L ++ND +
Sbjct: 205 AENLVNILLSLANDTN 220


>gi|144227619|gb|AAZ44502.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J]
          Length = 753

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 55/240 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +++ Q   +Q +A     S   + A AG+GKT +L +++  ++  + A+PS +L LT T 
Sbjct: 5   NILLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM +RV +++   S                                        ++
Sbjct: 65  KAAEEMRNRVEKLVGEKSK--------------------------------------DIQ 86

Query: 133 VQTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           + T H+ C  I++          E  +    F I DE+  KK++E+     L     D +
Sbjct: 87  ILTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRD 145

Query: 186 EELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           E    AF  I  ISN    ++  E L+  I +    +K+  +     +  K  E ++   
Sbjct: 146 ETKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 202


>gi|312601375|gb|ADQ90630.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 168]
          Length = 753

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 55/240 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +++ Q   +Q +A     S   + A AG+GKT +L +++  ++  + A+PS +L LT T 
Sbjct: 5   NILLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM +RV +++   S                                        ++
Sbjct: 65  KAAEEMRNRVEKLVGEKSK--------------------------------------DIQ 86

Query: 133 VQTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           + T H+ C  I++          E  +    F I DE+  KK++E+     L     D +
Sbjct: 87  ILTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRD 145

Query: 186 EELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           E    AF  I  ISN    ++  E L+  I +    +K+  +     +  K  E ++   
Sbjct: 146 ETKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 202


>gi|326776760|ref|ZP_08236025.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
 gi|326657093|gb|EGE41939.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 1199

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 84/237 (35%), Gaps = 52/237 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 48  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 107

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + + A      +++  +                           PG   + 
Sbjct: 108 AGELAERVRKALIAAGVTDPDVIDPD-------------------------NPPGEPTIS 142

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS-------------TLASIM 181
           T HAF   ++ +  L   +     +  +    +L  +  +              TL S +
Sbjct: 143 TYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLREAPGPYPALTRSFSTLVSDL 202

Query: 182 LDNNEELKKAFYEILEISNDEDIET-LISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           L  + EL +    ++     E  +T L+ D+ + R          S    RKI E +
Sbjct: 203 LALDGELSE---HLVRPGTLETYDTELLRDLAAAR---------LSNADLRKIPEAA 247


>gi|224823759|ref|ZP_03696868.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
 gi|224604214|gb|EEG10388.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
          Length = 586

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA---NAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
            + A+AG+GKT  +     RLLL     A P     +L +T+TKAA AE+  R+   +  
Sbjct: 18  LIEASAGTGKTWTIAALYTRLLLEERDGAPPPSIEQILVVTYTKAATAELRERLRHRLAE 77

Query: 89  WSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            + + D   + +  +  +  +    +    AR  L   +       + TIH FC+ ++  
Sbjct: 78  LAAVLDGTPTRDGFLLAMAQRFAEPAARELARQRLTAAITGFDAAAIYTIHGFCQRVLTD 137

Query: 147 FPLEANITSHFA-IADEEQS-KKLIEEAKKS------TLASIMLDNNEELKKAFYEI 195
              E+  T     IAD+ +   +++++  +        LA ++ +  E       ++
Sbjct: 138 AAFESGQTFTAELIADDAERLTEVVDDFWRRRVVADALLARVLAEAGETPDSWLAQV 194


>gi|144575418|gb|AAZ53772.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448]
          Length = 753

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 55/240 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +++ Q   +Q +A     S   + A AG+GKT +L +++  ++  + A+PS +L LT T 
Sbjct: 5   NILLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM +RV +++   S                                        ++
Sbjct: 65  KAAEEMRNRVEKLVGEKSK--------------------------------------DIQ 86

Query: 133 VQTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           + T H+ C  I++          E  +    F I DE+  KK++E+     L     D +
Sbjct: 87  ILTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRD 145

Query: 186 EELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           E    AF  I  ISN    ++  E L+  I +    +K+  +     +  K  E ++   
Sbjct: 146 ETKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 202


>gi|86148764|ref|ZP_01067035.1| ATP-dependent DNA helicase Rep [Vibrio sp. MED222]
 gi|85833442|gb|EAQ51629.1| ATP-dependent DNA helicase Rep [Vibrio sp. MED222]
          Length = 260

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKGESK-------------------------------------GLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    +D +++L +A    
Sbjct: 84  FHTMGLTIIRREYKALGLKAGFSLFDDQDQLALLKE-----LTERQIDGDKDLLRALMST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|229521160|ref|ZP_04410580.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80]
 gi|229341692|gb|EEO06694.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80]
          Length = 1208

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D S A  LL+          + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|306815184|ref|ZP_07449337.1| ATP-dependent DNA helicase Rep [Escherichia coli NC101]
 gi|305851553|gb|EFM52007.1| ATP-dependent DNA helicase Rep [Escherichia coli NC101]
          Length = 673

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E     +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTDGLIE----DDKLILQQLISTISNWKND 145


>gi|213022136|ref|ZP_03336583.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 321

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|269793285|ref|YP_003318189.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100920|gb|ACZ19907.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 1125

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 26/164 (15%)

Query: 16  LISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTK 72
           L +    +QL A   T     V A AG+GKTH L  RV  L+          +  LT T+
Sbjct: 12  LEANYSPDQLRAVTSTGPVTVVKAGAGTGKTHTLSGRVAYLMATQEGLELDQVAVLTFTE 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +I+  W                G++     + +A   +       G   
Sbjct: 72  KAAQEMGERIRDILLHW----------------GRELKMPRLEEASRRV-------GEAY 108

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + TIH+F   ++++ P EA +    ++A    + +   E   + 
Sbjct: 109 ISTIHSFALRLIRENPAEAKLPVDASVAPRCSTDEFRAELAMAF 152


>gi|194367786|ref|YP_002030396.1| exodeoxyribonuclease V subunit beta [Stenotrophomonas maltophilia
           R551-3]
 gi|194350590|gb|ACF53713.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 1226

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 20  TKSEQLLASDPTRSA------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
            K  Q +A DP  +        + A+AG+GKT  L     RL++        +L +T T 
Sbjct: 7   DKETQRMAGDPYLALPLDGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTD 66

Query: 73  AAAAEMSHRVLEIITAWSHLSD------EILSAEITKIQGKKPNKSDMSKA---RHLLIT 123
           AA  E+  R+ E +   + L D      E   A +T+   ++  +     A   +  L  
Sbjct: 67  AATQELRKRIRERLALAARLVDLEPAEGEAPDARLTRDVLQRHLQGGSESASALKRRLQV 126

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
             +      + TIH FC  ++++  LE+  T           ++L+EE       
Sbjct: 127 AADEIDLASIFTIHGFCTRVLREHALESGHTFDPPELLASD-RELLEELAADLWR 180


>gi|330977542|gb|EGH77487.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 575

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 47  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 106

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++   S        L    +      V TIH+
Sbjct: 107 RIRTRLAEAARFFRDEIAAPDGLIADLREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 166

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 167 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 205


>gi|54020194|ref|YP_115928.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 232]
 gi|53987367|gb|AAV27568.1| ATP-dependent DNA helicase [Mycoplasma hyopneumoniae 232]
          Length = 769

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 55/240 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +++ Q   +Q +A     S   + A AG+GKT +L +++  ++  + A+PS +L LT T 
Sbjct: 21  NILLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTN 80

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM +RV +++   S                                        ++
Sbjct: 81  KAAEEMRNRVEKLVGEKSK--------------------------------------DIQ 102

Query: 133 VQTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           + T H+ C  I++          E  +    F I DE+  KK++E+     L     D +
Sbjct: 103 ILTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRD 161

Query: 186 EELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           E    AF  I  ISN    ++  E L+  I +    +K+  +     +  K  E ++   
Sbjct: 162 ETKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 218


>gi|262191393|ref|ZP_06049582.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93]
 gi|262032724|gb|EEY51273.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93]
          Length = 1208

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCVETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D S A  LL+          + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|302536761|ref|ZP_07289103.1| UvrD/REP helicase [Streptomyces sp. C]
 gi|302445656|gb|EFL17472.1| UvrD/REP helicase [Streptomyces sp. C]
          Length = 832

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 29/207 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 23  GIPFTPEQLACVTAPAAPQVIVAGAGSGKTTVMAARVVWLVGTGTVAPEQVLGLTFTNKA 82

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +        +   A++                           G  ++ 
Sbjct: 83  AGELAERVRKALAQAGVTDPDPSPADVEAGTAG---------------------GEPRIS 121

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   +++   L   +     +  +    +L  +  +             L K+  +
Sbjct: 122 TYHAFAGQLLKDHGLRIGLEPSARLLADATRFQLAAKVLRE-----APGPYPSLTKSVPD 176

Query: 195 ILEISNDEDIETLISDIISNRTALKLI 221
           ++  S+   ++  +S+ +    AL+  
Sbjct: 177 LV--SDLLALDGELSEHLVEPDALRAY 201


>gi|237747303|ref|ZP_04577783.1| rep helicase [Oxalobacter formigenes HOxBLS]
 gi|229378654|gb|EEO28745.1| rep helicase [Oxalobacter formigenes HOxBLS]
          Length = 687

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 38/161 (23%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           D+ ++  ++Q  A         V A AGSGKT ++ Q++  L+ +       +  LT T 
Sbjct: 4   DVFAKLNAQQHEAVYYMEGPCLVLAGAGSGKTRVITQKIAHLIGSGQYEARHIAALTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R+  +++  +                                        L 
Sbjct: 64  KAAAEMQERISRLLSEPA------------------------------------DASQLT 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           + T H+    I++Q   E N+   F+I D +    L+++  
Sbjct: 88  ISTFHSLGVKILRQEAKELNLKDRFSILDSDDCFSLVQDLA 128


>gi|194734421|ref|YP_002116848.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197301058|ref|ZP_02663427.2| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194709923|gb|ACF89144.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288746|gb|EDY28121.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|267996194|gb|ACY91079.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|323132265|gb|ADX19695.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326625637|gb|EGE31982.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 707

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 40  QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 99

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 100 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 122

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 123 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 178


>gi|29839776|ref|NP_828882.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC]
 gi|29834123|gb|AAP04760.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC]
          Length = 1045

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 27  ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80
             +P  S     ++ A+AG+GKT  + Q VLR LL  +  H   +L +T T AA  E+  
Sbjct: 6   IFNPQTSIRGKYFLEASAGTGKTFTIEQIVLRALLEGSVSHVENILAVTFTNAATNELKL 65

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ + +         +L      +     + S++      +   L T   + + TIH FC
Sbjct: 66  RIQDNLKQALCQIKSVLEDPSKSLPPYLKDTSNVKLLYMQVRNALATIDRMAIFTIHGFC 125

Query: 141 EAIMQQFP 148
             ++QQ  
Sbjct: 126 NYVLQQHF 133


>gi|46445643|ref|YP_007008.1| putative exodeoxyribonuclease V beta chain [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399284|emb|CAF22733.1| putative exodeoxyribonuclease V beta chain [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 1166

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 29/235 (12%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTHTKAAAAEMSHRVLEI 85
           +   + A+AG+GKT  +   V+RLL+ N         S +L +T TKAA  ++  R+   
Sbjct: 10  QHYLLEASAGTGKTFSIQNIVVRLLIENQLEQEALPLSKILVVTFTKAATRDLKLRIRLN 69

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMS-------KARHLLITILETPGGLKVQTIHA 138
           I     + +E LS            K+ +        KA+  L   L      ++ TIHA
Sbjct: 70  IEYALEVFNEWLSHSNVLENTPDYLKAVIEAGIESVLKAKKKLQQALFEFDQAQIFTIHA 129

Query: 139 FCEAIMQQFPLEANITSHFAIADEE----QSKKLIEEAKKSTLA---------SIMLDNN 185
           FC  +++Q+ +E++I  H +  +E     +   +I++  ++ +           I+L ++
Sbjct: 130 FCARMLRQYAIESDIGFHASYGEETFPPSEILAVIQDFFRTEIRLENFSPAQLEIILKHD 189

Query: 186 EELKKAFYEI---LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            + KK    I    E       + +    +     L+  +   S L      E++
Sbjct: 190 PDQKKLLRAIQSGYEFEELPTFQQIYQQFLEGMQNLQRTYSISSSLLMEDFQEQA 244


>gi|145635681|ref|ZP_01791377.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA]
 gi|145267076|gb|EDK07084.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA]
          Length = 671

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T S  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAIEYVTGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|213864699|ref|ZP_03386818.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 549

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|42520776|ref|NP_966691.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410516|gb|AAS14625.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 638

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 43/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            ++ + L++    +Q   ++      + A AG+GKT  +  R+  ++    A+   +L +
Sbjct: 1   MNDYLSLLN--PEQQSAVTNIDGPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RVLE+                                           
Sbjct: 59  TFTNKAANEMVSRVLELTGT---------------------------------------- 78

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T HA    I++       +  +F I   +   ++I+      
Sbjct: 79  NIPWLGTFHAIAAKILRLHAEIVGLNPNFTIIGVDDQLQVIKNIINEI 126


>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
          Length = 861

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 79/216 (36%), Gaps = 50/216 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q +  +  R+  + A+AG+GKT+ L  RV  ++ +       +LC+T T  AA EM
Sbjct: 4   NSEQQRVIDELDRNILLLASAGTGKTNTLAYRVAHIIESGRCEAHQILCMTFTNKAAQEM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++   +   +                                      + T H+
Sbjct: 64  KSRIEFLVGQPAKAVE--------------------------------------ISTFHS 85

Query: 139 FCEAIM-----QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           FC  ++     +   L  ++     I DEE  K+L    K   +  +   +   + K + 
Sbjct: 86  FCFYVLQQEGKRDESLYTDV----TIFDEEDCKELYLPYKPRNMRDMNFASLISMVKEYR 141

Query: 194 EILEISNDEDIETLISDI--ISNRTALKLIFFFFSY 227
            + E  ++  I+     I  +    + ++   F++Y
Sbjct: 142 SVYEFYSESLIDDYKRTIQRLEQEQSKQIEKLFYNY 177


>gi|83816462|ref|YP_444656.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83757856|gb|ABC45969.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 712

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 45/209 (21%)

Query: 13  TIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           TI+       +Q  A+   +    + A AG+GKT  L+ R+  L+     P  ++ LT T
Sbjct: 22  TIEYAEALNEQQYAAATAGKGPLLIVAGAGTGKTRTLIYRLAYLVETGTRPQQIVLLTFT 81

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA +M+ R           +  +L     K++G                         
Sbjct: 82  RRAANDMTAR-----------ASNLLDGRCEKVRG------------------------- 105

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--K 189
              T HAFC  +++Q         +F + D   +  ++   +         D  E    K
Sbjct: 106 --GTFHAFCLEVLRQHAEALGFPRNFTVLDAADAADVLSVIRTR---GEYGDGEERFPQK 160

Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218
              Y +   + + D ETL   I       
Sbjct: 161 NTLYSMFSSATNRD-ETLGETITKRYPQF 188


>gi|157413574|ref|YP_001484440.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9215]
 gi|157388149|gb|ABV50854.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9215]
          Length = 1208

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L          
Sbjct: 14  LIEASAGTGKSFTLSHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKILSRFHNLKLYL 73

Query: 94  DEILSAEI-TKIQGKKPNKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQFP 148
                 +I   ++    N  D  K++  +I+     +     LKV T HAFC  I+ ++ 
Sbjct: 74  QSHNEIKIDNTLKEWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDEYS 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +E  +T    I +   +  L ++   +      L+ N E+  A 
Sbjct: 134 IEIGVTQDPYIENNIDN--LYKDVIDNLWIDDFLNLNHEIISAV 175


>gi|254286015|ref|ZP_04960976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226]
 gi|150423925|gb|EDN15865.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226]
          Length = 1208

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D S A  LL+          + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|330988759|gb|EGH86862.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1230

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +     +      +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIATPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|237801822|ref|ZP_04590283.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024681|gb|EGI04737.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 1230

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    +RL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYVRLVLGHGSEESGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLADAARFFRDEIAAPDGLIAELREQFEVEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|332180434|gb|AEE16122.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 1299

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 31/203 (15%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71
           T  + S+   EQ  A    R++ V+A AGSGKT +L  R   L+L    P   +L LT T
Sbjct: 3   TAGIFSKLNEEQTAAVTAARNSVVAAGAGSGKTTVLAGRFAYLVLYRDIPAEKILTLTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           K AAAEM  R+   +   +                          A+    T +E+    
Sbjct: 63  KKAAAEMYARIYRTLKTVAENGSG--------------------DAQRKARTAIESFFKT 102

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           ++QT+ ++  +I++       I   F    E  ++   E A+   L  ++   ++   + 
Sbjct: 103 RIQTLDSYGASIVKLAAHRYGIAPDF----ETDNEACKEAARTQALQFLIEHRSQPALRQ 158

Query: 192 FYEILEISNDEDIETLISDIISN 214
           F +          E L  ++ ++
Sbjct: 159 FLQTTRP------ERLAQELFAD 175


>gi|326629652|gb|EGE35995.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 707

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 40  QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 99

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 100 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 122

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 123 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 178


>gi|46143262|ref|ZP_00135577.2| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207854|ref|YP_001053079.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           L20]
 gi|303252613|ref|ZP_07338776.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247370|ref|ZP_07529417.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|126096646|gb|ABN73474.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302648581|gb|EFL78774.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306856067|gb|EFM88223.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 1202

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             +A + A+AG+GKT  +    LRLLL    A+     +L +T TKAA  E+  R+   I
Sbjct: 12  NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71

Query: 87  TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            A      E  + +   I             + +A   L           + TIH+FC+ 
Sbjct: 72  KACRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++ QF  ++ +   F    +     L+    +     +          A  E L   N+ 
Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYLGTPNNA 189


>gi|260881254|ref|ZP_05404011.2| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544]
 gi|260848967|gb|EEX68974.1| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544]
          Length = 745

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 51/166 (30%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           E  DL++     Q  A   T     V A AGSGKT  L  R   L+      P  +LC+T
Sbjct: 28  EEQDLLAGLNDAQREAVTTTEGFVRVLAGAGSGKTRALTHRFAYLVEELGILPGNILCVT 87

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  +                                            
Sbjct: 88  FTNKAATEMRSRIHALTGDNDTGY------------------------------------ 111

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + T H FC +I+Q+          F + D      ++ +  + 
Sbjct: 112 ---INTFHGFCVSILQEDSHAVGYPKSFLVLDNADIDDMLAKIYEE 154


>gi|153213940|ref|ZP_01949136.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587]
 gi|124115593|gb|EAY34413.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587]
          Length = 1208

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|15642318|ref|NP_231951.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121586166|ref|ZP_01675957.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80]
 gi|153817895|ref|ZP_01970562.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|153821518|ref|ZP_01974185.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33]
 gi|227082444|ref|YP_002810995.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2]
 gi|229507609|ref|ZP_04397114.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286]
 gi|229512195|ref|ZP_04401674.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33]
 gi|229519331|ref|ZP_04408774.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9]
 gi|229607115|ref|YP_002877763.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236]
 gi|254849444|ref|ZP_05238794.1| exodeoxyribonuclease V [Vibrio cholerae MO10]
 gi|255746995|ref|ZP_05420940.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101]
 gi|262161463|ref|ZP_06030573.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1]
 gi|298500312|ref|ZP_07010117.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757]
 gi|9656886|gb|AAF95464.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549578|gb|EAX59602.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80]
 gi|126511603|gb|EAZ74197.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|126521011|gb|EAZ78234.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33]
 gi|227010332|gb|ACP06544.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2]
 gi|229344020|gb|EEO08995.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9]
 gi|229352160|gb|EEO17101.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33]
 gi|229355114|gb|EEO20035.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286]
 gi|229369770|gb|ACQ60193.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236]
 gi|254845149|gb|EET23563.1| exodeoxyribonuclease V [Vibrio cholerae MO10]
 gi|255735397|gb|EET90797.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101]
 gi|262028774|gb|EEY47428.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1]
 gi|297541005|gb|EFH77059.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757]
          Length = 1208

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|153825966|ref|ZP_01978633.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2]
 gi|149740283|gb|EDM54424.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2]
          Length = 1208

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|67459079|ref|YP_246703.1| DNA helicase II [Rickettsia felis URRWXCal2]
 gi|75536488|sp|Q4ULN5|UVRD_RICFE RecName: Full=Probable DNA helicase II homolog
 gi|67004612|gb|AAY61538.1| DNA helicase II [Rickettsia felis URRWXCal2]
          Length = 654

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q           + A AG+GKT +L  R+  ++  N A P  +L +T T  AA EM
Sbjct: 12  NPQQQKAVLHTKGPLLLLAGAGTGKTKVLTSRIANIVHQNLASPQNILAVTFTNKAAKEM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV  +I  +                                        GL + T H+
Sbjct: 72  AERVNSLINCY----------------------------------------GLNIGTFHS 91

Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174
               I++     L   + + F I   +   KL+++  K
Sbjct: 92  MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 129


>gi|319775408|ref|YP_004137896.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           influenzae F3047]
 gi|317449999|emb|CBY86212.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           influenzae F3047]
          Length = 670

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T S  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAIEYVTGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|307249590|ref|ZP_07531577.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858445|gb|EFM90514.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 1202

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             +A + A+AG+GKT  +    LRLLL    A+     +L +T TKAA  E+  R+   I
Sbjct: 12  NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71

Query: 87  TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            A      E  + +   I             + +A   L           + TIH+FC+ 
Sbjct: 72  KACRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++ QF  ++ +   F    +     L+    +     +          A  E L   N+ 
Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYLGTPNNA 189


>gi|261884575|ref|ZP_06008614.1| putative recombination protein RecB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 135

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +R   + A+A SG T  L  R + L+L     + +L LT TK AA EM  R+++      
Sbjct: 4   SRYLALEASAASGITFALSVRFIALILQGNDIAEILALTFTKKAANEMKSRIIDAFCNLH 63

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             S +    E+ KI           + +++   +      LK+ T  +F   I++QF L 
Sbjct: 64  ESSKKNELNELEKILELSAVDILSLRDKYMGNFL---KNELKISTFDSFFTMILRQFSLN 120

Query: 151 ANITSHF 157
             I   F
Sbjct: 121 LGIMPDF 127


>gi|1075208|pir||D64084 helicase (EC 3.6.1.-) rep - Haemophilus influenzae (strain Rd KW20)
          Length = 698

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 42/187 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L+     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  A
Sbjct: 28  LMKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKA 87

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV   I                                       E   GL V 
Sbjct: 88  AREMKERVAHSIGK-------------------------------------EQSKGLLVS 110

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     I+++        S+  + DE     L++E     L     ++ + L++    
Sbjct: 111 TFHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISV 166

Query: 195 ILEISND 201
           I    ND
Sbjct: 167 ISNWKND 173


>gi|330954206|gb|EGH54466.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae Cit 7]
          Length = 1230

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++   S        L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIADLREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
 gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
          Length = 862

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 40/156 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +S  + ++LL ++  ++  + A+AG+GKT  L +RV  ++    A PS +LC+T T  A 
Sbjct: 1   MSMNEQQELLINELEKNVILLASAGTGKTETLSKRVANIIDKGKAEPSQILCITFTNKAC 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+  I+ A +                                        + V+T
Sbjct: 61  KEIRERIEGIVGASAK--------------------------------------DITVKT 82

Query: 136 IHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIE 170
            H+FC  +++Q   +  ++ + F I DEE  ++L++
Sbjct: 83  FHSFCFDVIKQEAKKGTDVFTDFTIFDEEDCRELVK 118


>gi|237748331|ref|ZP_04578811.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
 gi|229379693|gb|EEO29784.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
          Length = 1246

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL----EIITA 88
             + A+AG+GKT  +    LRLLL        +L +T T+AA AE+  R+     + ++ 
Sbjct: 18  ILIEASAGTGKTWNIGGLYLRLLLEKQLEVKQILVVTFTRAATAELRDRIRGRIAKALSY 77

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            + + D      + ++ G++    +  ++    L    E+     + TIH+FC+  +   
Sbjct: 78  LNGVDDLADDTFLLELLGRQLETGNTHAELTSRLQLAFESFDQAAIFTIHSFCQRALATT 137

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              A +   F +  E   ++++ EA +      +   N  L  AF   LE
Sbjct: 138 AFSAGVA--FTVRTETVDEEMVLEAVQDFWRRHIA--NGHLSAAFSAWLE 183


>gi|153828214|ref|ZP_01980881.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39]
 gi|148876303|gb|EDL74438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39]
          Length = 1208

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|182676893|ref|YP_001831040.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182636523|gb|ACB97296.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 730

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 70/196 (35%), Gaps = 46/196 (23%)

Query: 7   FQEHSETIDLISQ-TKSEQLLASDPTRSAWVSANAGSGKTHIL----VQRVLRLLLANAH 61
           +   SE   +++Q     Q+ A+    +  V A AG+GKT  L    V R+    +    
Sbjct: 55  YAPSSEAFTVLTQGLTPRQIEAASAPGAVVVLAGAGTGKTSTLTCAVVHRIA---VEGLS 111

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
            S +L +T T  AA+EMS R+   +   S  S                            
Sbjct: 112 ASRILAVTFTNKAASEMSDRIRAALQGGSTPS---------------------------- 143

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                      + T H      ++  P  A +  +F I D + S++LI+   +S   +  
Sbjct: 144 ----------WLGTFHGLGARQLRAEPEVAGLRPNFEILDADDSRRLIKRIMQSLNLNTD 193

Query: 182 LDNNEELKKAFYEILE 197
             +NE   +    ++ 
Sbjct: 194 EQDNESGPEPIKRMIN 209


>gi|315655698|ref|ZP_07908596.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
 gi|315489762|gb|EFU79389.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
          Length = 1191

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 11/196 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T+ +  + + P     V A AGSGKT  +  R++  ++     P  +L LT T+ AAAE
Sbjct: 25  PTQEQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAE 84

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILE---TPGGLK 132
           M+ R    +  ++ L + +     T       K    D+++ R    T+++   TP  L+
Sbjct: 85  MAARFSLRLDRFASLLESVQERRQTAEVTAVLKAADFDLNQLRQRFDTLVQRGMTPEMLR 144

Query: 133 ----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               V T  ++   ++ +F       S F    +    +++ +  +S   ++      E 
Sbjct: 145 HPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGEN 204

Query: 189 KKAFYE-ILEISNDED 203
            +     +L ++ND +
Sbjct: 205 AENLVNILLSLANDTN 220


>gi|306822220|ref|ZP_07455602.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679]
 gi|309802289|ref|ZP_07696397.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
 gi|304554602|gb|EFM42507.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679]
 gi|308221172|gb|EFO77476.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
          Length = 1346

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 28/166 (16%)

Query: 18  SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P+     V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+
Sbjct: 8   TDSPEQAAVVQAPSYADVVVVAGAGSGKTYTMTRRIINLIEQGVSPERILGLTFTRKAAS 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   + +          A   K +                           + T 
Sbjct: 68  ELLSRVSAAVVSNQGGRTGSAGAAFLKPE---------------------------ISTY 100

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            AF + I++Q+ L      +     E  + +LI       +  IM 
Sbjct: 101 DAFFQTIVRQYGLLVGFDQNTQPLSEAGAMQLIYAMLDKHMDEIMR 146


>gi|209693716|ref|YP_002261644.1| ATP-dependent DNA helicase rep [Aliivibrio salmonicida LFI1238]
 gi|208007667|emb|CAQ77777.1| ATP-dependent DNA helicase rep [Aliivibrio salmonicida LFI1238]
          Length = 671

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 43/179 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +       +    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPQQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                          +  ++R LL           V T H+
Sbjct: 64  KERVGQTL--------------------------NKQESRGLL-----------VSTFHS 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
               I+++      + + F++ D++    L++E     L    +D +++L +     + 
Sbjct: 87  LGLDIIRREYKILGLKAGFSLFDDQDQLALLKE-----LTEKQIDGDKDLLRQLLSCIS 140


>gi|239787415|emb|CAX83890.1| Exodeoxyribonuclease V, beta subunit [uncultured bacterium]
          Length = 1228

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            +  + A+AG+GKT+ +    +RL+L +           P  +L +T T+AA  E+  R+
Sbjct: 17  GNRLIEASAGTGKTYTIALLYVRLVLGHGAGSTGRAPLTPPEILVVTFTRAATRELRERI 76

Query: 83  LEIITAWSHLSDEILSAE------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
              +   +    +  +        +  ++   P ++    AR L +   E      V+TI
Sbjct: 77  RARLAEAAACFRDAATDAAGWDPLLRALRAAYPPEAWTGCARRLQLAA-EWMDEASVETI 135

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           H +C  ++Q+   +++    F        + L+ E  +    
Sbjct: 136 HGWCHRMLQEHAFDSDTP--FTRELAADQRALLTEVVRDYWR 175


>gi|310819562|ref|YP_003951920.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392634|gb|ADO70093.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 781

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 43/195 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      ++           V + AGSGKT ++ +RV  L+ +    P  +L +T T  A
Sbjct: 16  LEDLNPPQKEAVLHGEGPLLVLSGAGSGKTRVITRRVAHLVKVRRVFPWRILAVTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+++++ A +H                                       L V 
Sbjct: 76  AREMRERLVQLLGAQAH--------------------------------------ELVVS 97

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+    I+++      +T  F I D+     +++ A +       ++ + + ++  + 
Sbjct: 98  TFHSSAAMILRREAEAVGLTRSFVIYDDGDQLNIVKRAMR----EARVEPSMQPREILHR 153

Query: 195 ILEISNDEDIETLIS 209
           I +  N   +   + 
Sbjct: 154 IDQEKNAARLPDAMQ 168


>gi|260581374|ref|ZP_05849189.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW]
 gi|260091969|gb|EEW75917.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW]
          Length = 676

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 42/187 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L+     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  A
Sbjct: 6   LMKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV   I                                       E   GL V 
Sbjct: 66  AREMKERVAHSIGK-------------------------------------EQSKGLLVS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     I+++        S+  + DE     L++E     L     ++ + L++    
Sbjct: 89  TFHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISV 144

Query: 195 ILEISND 201
           I    ND
Sbjct: 145 ISNWKND 151


>gi|220931259|ref|YP_002508167.1| UvrD/REP helicase [Halothermothrix orenii H 168]
 gi|219992569|gb|ACL69172.1| UvrD/REP helicase [Halothermothrix orenii H 168]
          Length = 1036

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L    +  LL       ++ +T T+ A AE+  R+ E I        
Sbjct: 4   VLKASAGTGKTYRLSLEYVNSLLRGQSFDEIVVMTFTRKATAEIRERIFEHIEDLLEHGM 63

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEANI 153
           E       K      +  +    +     +L     L + TI +F   + +Q       +
Sbjct: 64  ESKVYNSLKEIYHDISF-NRDNLQKKYKAMLINKDKLHIYTIDSFINRVFKQAIAPYLGV 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLISD 210
              + I +++++ +++E+  K  L      +N +      + L  + +  I+    LI  
Sbjct: 123 -YKYEIVEDDKNTEIVEKVFKEIL------DNPDDFALMEKFLSDNPERKIKEYINLIKS 175

Query: 211 IISNRTALKLI 221
           +++NR    LI
Sbjct: 176 MLNNRWKFLLI 186


>gi|171057030|ref|YP_001789379.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
 gi|170774475|gb|ACB32614.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
          Length = 687

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 38/156 (24%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           S     QL A +   S   V A AGSGKT ++  ++ RLL A   P  +  +T T  AA 
Sbjct: 6   STLNPAQLEAVNHLHSPCLVLAGAGSGKTRVITHKIARLLQAGLKPDQIAAITFTNKAAQ 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R   +I A +                          A+HL+           + T 
Sbjct: 66  EMRERARSLIGARA--------------------------AKHLV-----------IATF 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           H+    ++++      +   F+I D +    ++ +A
Sbjct: 89  HSLGVRMLREDGECMGLKPKFSILDADDVLGVLRDA 124


>gi|187735472|ref|YP_001877584.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425524|gb|ACD04803.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 668

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 37/164 (22%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            +++  + S   +++           + A AG+GKT  +  R+  ++     P ++L +T
Sbjct: 1   MAKSFSMESLNAAQRKAVQTLQGPVLILAGAGTGKTRTVTCRIAHMVDRGISPKSILAVT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++   +                          AR ++        
Sbjct: 61  FTNKAALEMRERVGQMVERKA--------------------------ARQIM-------- 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
              V T H+ C  I+++        ++F I    +   LI    
Sbjct: 87  ---VSTFHSLCVRILREDIGRLGYKTNFTIYSGSEQSGLIRRLI 127


>gi|220917224|ref|YP_002492528.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955078|gb|ACL65462.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 726

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 42/206 (20%)

Query: 11  SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +  ++       +Q+   +       V A AGSGKT  L  RV RL+     P  +L LT
Sbjct: 14  ARALNYQGLLNDQQIAVVEAGDGPILVIAGAGSGKTRTLTWRVARLVADGVAPEGILLLT 73

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV           +E+   +  +I G                       
Sbjct: 74  FTNKAAREMLRRV-----------EEVCRVDTRRISG----------------------- 99

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                T H     ++++   E      ++I D E S+ ++  A      ++      +  
Sbjct: 100 ----GTFHHVAHEVLREHAAELGYQRGYSILDREDSRDVMTAAIAECGLAVGARRFPK-A 154

Query: 190 KAFYEILEISNDEDIETLISDIISNR 215
               +++ ++ +   +T ++D++++R
Sbjct: 155 DVLIDLVSMAVNT--QTPLADVLADR 178


>gi|153004223|ref|YP_001378548.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152027796|gb|ABS25564.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 1196

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 20/140 (14%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEI 85
                VSA AGSGKT  LV+   RLL   A      P+ +  +T T+ AA E++ R+   
Sbjct: 20  DAPTAVSAGAGSGKTTALVELCARLLSGEALGTPCAPAEIAAITFTEKAAEELAQRLRGA 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   +  + E                   S+A    +  L+    L   TIH FC  +++
Sbjct: 80  VAERARAACEADPG---------------SEAARAWLERLDGLERLSAGTIHGFCGRLLR 124

Query: 146 QFPLEANITSHFAIADEEQS 165
           +   EA +   FA+ADEE+S
Sbjct: 125 EHAPEAGLDPEFAVADEERS 144


>gi|295112231|emb|CBL28981.1| Superfamily I DNA and RNA helicases [Synergistetes bacterium SGP1]
          Length = 682

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 45/171 (26%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           ++ ++ +S  + E +   D      + A AGSGKT +L  +V  L+    A P  +  +T
Sbjct: 4   NDILERLSPRQREAVTYVD--GPLLILAGAGSGKTRVLTHKVAWLIAEGLARPWEITAVT 61

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++   +                                       
Sbjct: 62  FTNKAAGEMRERVSALVPDGA--------------------------------------D 83

Query: 130 GLKVQTIHAFCEAIMQQFP----LEANITSHFAIADEEQSKKLIEEAKKST 176
            + V T HAF    + + P        + + FA+ D   S+ L+ +  +  
Sbjct: 84  KVWVSTFHAFGLRFLFRNPEAVERLTGLRTGFAVLDRGDSRSLVGQIMERL 134


>gi|150020672|ref|YP_001306026.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
 gi|149793193|gb|ABR30641.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
          Length = 630

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 39/164 (23%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL  +   EQ  A  + +    V A  GSGKT ++  ++  L+ +   P+ ++ +T TKA
Sbjct: 4   DLKLKLDEEQYKAVVESSGKTLVIAGPGSGKTRVITYKIAHLIDSGIKPNEIMLVTFTKA 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R   +  +                                         G+  
Sbjct: 64  AAREMLQRAKVVSKS--------------------------------------NLNGITA 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            T H  C   ++++     + S+F I D E +K L+E  +   +
Sbjct: 86  GTFHHVCNLFLRRYGRLIGLKSNFTILDSEDAKDLMESTRSQLI 129


>gi|58696814|ref|ZP_00372342.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225630630|ref|YP_002727421.1| DNA helicase II [Wolbachia sp. wRi]
 gi|58536984|gb|EAL60139.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592611|gb|ACN95630.1| DNA helicase II [Wolbachia sp. wRi]
          Length = 638

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 43/168 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
            ++ + L++    +Q   ++      + A AG+GKT  +  R+  ++    A+   +L +
Sbjct: 1   MNDYLSLLN--PEQQSAVTNIDGPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RVLE+                                           
Sbjct: 59  TFTNKAANEMVSRVLELTGT---------------------------------------- 78

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + T HA    I++       +  +F I   +   ++I+      
Sbjct: 79  NIPWLGTFHAIAAKILRLHAEIVGLNPNFTIIGVDDQLQVIKNIINEI 126


>gi|262404646|ref|ZP_06081201.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586]
 gi|262349678|gb|EEY98816.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586]
          Length = 1208

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|298345279|ref|YP_003717966.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235340|gb|ADI66472.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
          Length = 1191

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 11/196 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T+ +  + + P     V A AGSGKT  +  R++  ++     P  +L LT T+ AAAE
Sbjct: 25  PTQEQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAE 84

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILE---TPGGLK 132
           M+ R    +  ++ L + +     T       K    D+++ R    T+++   TP  L+
Sbjct: 85  MAARFSLRLDRFASLLESVQERRQTAEVTAVLKAADFDLNQLRQRFDTLVQRGMTPEMLR 144

Query: 133 ----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
               V T  ++   ++ +F       S F    +    +++ +  +S   ++      E 
Sbjct: 145 HPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGEN 204

Query: 189 KKAFYE-ILEISNDED 203
            +     +L ++ND +
Sbjct: 205 AENLVNILLSLANDTN 220


>gi|229524317|ref|ZP_04413722.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis
           VL426]
 gi|229337898|gb|EEO02915.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis
           VL426]
          Length = 1208

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|197364702|ref|YP_002144339.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197096179|emb|CAR61775.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 674

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|21223553|ref|NP_629332.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714472|emb|CAC01314.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 1222

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           +    ++  E +  I  T  +      P     + A AGSGKT ++  RV+ L+      
Sbjct: 55  HITDPEQLKELL-GIPFTPEQTACIVAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVA 113

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P  +L LT T  AA E++ RV   +        +++  +                     
Sbjct: 114 PEQVLGLTFTNKAAGELAERVRTALIRAGVTDPDVIDPD--------------------- 152

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                 PG   + T HAF   ++    L   +     +  +    +L     +       
Sbjct: 153 ----HPPGEPAISTYHAFAGRLLTDHGLRLGLEPTSRLLADATRYQLAARVLRE-----A 203

Query: 182 LDNNEELKKAFYEILEI 198
                 L ++F +++  
Sbjct: 204 PGPYPALTRSFADLVSD 220


>gi|295836625|ref|ZP_06823558.1| UvrD/Rep family helicase [Streptomyces sp. SPB74]
 gi|197699603|gb|EDY46536.1| UvrD/Rep family helicase [Streptomyces sp. SPB74]
          Length = 1221

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 36/235 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+   A  P  +L LT T  A
Sbjct: 107 GIPFTPEQLHCVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGAVAPEQVLGLTFTNKA 166

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAE++ RV   +            A   ++ G+                         + 
Sbjct: 167 AAELADRVRRSLVRAGFSDPGAPPAPGAELPGEPL-----------------------IS 203

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+F   ++    L   +     +  +    +L     +             L + F +
Sbjct: 204 TYHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLRE-----APGPYPALTRGFSD 258

Query: 195 ILEI---SNDEDIETLISDIISNRTALKLIFFF----FSYLWRRKIIEKSLWSIA 242
           ++      + E  E L+     +R   +L+        S    RK+ E +   +A
Sbjct: 259 LVSDLLALDGELSEHLVDPAALSRYDEELLRTLAGARLSNDQLRKVPEAAAARLA 313


>gi|58578906|ref|YP_197118.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
 gi|58417532|emb|CAI26736.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
          Length = 639

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 42/174 (24%)

Query: 15  DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D I+    +Q    ++      + A AG+GKT  +  R+  +L  N A PS +L +T T 
Sbjct: 3   DYITSLNEDQKKGVTNINGPILILAGAGTGKTRTMTSRIAYVLNNNFALPSQILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ E                                        L     + 
Sbjct: 63  KAANEMLSRINE----------------------------------------LTCASNIW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           + T HA    I++Q      + S F I   +   ++I+            D  +
Sbjct: 83  LGTFHAIATKILRQHAEAVGLKSDFTIIGTDDQLQVIKTIVNDMHPEYASDAYK 136


>gi|229513960|ref|ZP_04403422.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21]
 gi|229349141|gb|EEO14098.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21]
          Length = 1208

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|330723317|gb|AEC45687.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis MCLD]
          Length = 751

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 47/224 (20%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72
           D++S   + Q  A  +      + A AG+GKT +L +++  L+ A       +L LT T 
Sbjct: 12  DILSGLNTNQKAAVLENEHHLRIIAGAGTGKTSVLTKKIAYLIAAKITTAKKILALTFTN 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +I A +                                         K
Sbjct: 72  KAANEMKERVKNVIGADA--------------------------------------NETK 93

Query: 133 VQTIHAFCEAIMQ---QFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           + T H+ C  I++   Q   +     N+  +F I DE   KK++++  +    S+  +  
Sbjct: 94  IFTFHSLCNLILKIESQQFKKIKEFENLDKNFNIIDERDQKKILKDVYEKLQFSLSNEEI 153

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLW 229
              +KA   I  + N E     I     N T  KL+  + +Y++
Sbjct: 154 PNFRKAIDFISYVKNKELTFEQIQANAQNSTEKKLVKIYKNYVY 197


>gi|307133008|ref|YP_003885024.1| ATP-dependent DNA helicase Rep [Dickeya dadantii 3937]
 gi|306530537|gb|ADN00468.1| ATP-dependent DNA helicase Rep [Dickeya dadantii 3937]
          Length = 674

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 43/207 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++ Q++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQHAVEFVTGPCLVLAGAGSGKTRVITQKIAHLIRGCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRQETR-------------------------------------GLLIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L++E     L  + L N+++L +     L  
Sbjct: 87  LGLEIIKREYAALGMKSNFSLFDDQDQLALLKE-----LTELWLQNDKDLLQQLVSALSN 141

Query: 199 SNDEDIETLISDIISNRTALKLIFFFF 225
             ++ I+   +  ++     +L    +
Sbjct: 142 WKNDLIDPAQAAALARSERDRLFAHCY 168


>gi|62182388|ref|YP_218805.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62130021|gb|AAX67724.1| rep helicase, a single-stranded DNA dependent ATPase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716881|gb|EFZ08452.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 707

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 40  QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 99

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 100 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 122

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 123 DIIKREYAALGMKSNFSLFDDSDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 178


>gi|315122506|ref|YP_004062995.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495908|gb|ADR52507.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 681

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 15  DLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71
           + +     +Q+ A          + A AG+GKT +L+ R+L L+     P S +L +T T
Sbjct: 29  NYLEGLNPQQVHAITFTDKYPLLILAGAGTGKTTVLIARMLHLIYQKKIPASKILAMTFT 88

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A  EM +R                   +  + G  P                      
Sbjct: 89  NQAIQEMKNR-------------------LACLSGHIP---------------------- 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           ++QT H+F  +I++Q      + + F I D   S+ +I+E  K
Sbjct: 108 QIQTFHSFSASILRQHGNVVGLPTDFTILDSGDSRTIIKEILK 150


>gi|257095814|ref|YP_003169455.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048338|gb|ACV37526.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 661

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 40/164 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           + L +  + E +   D      V A AGSGKT ++ +++  L+ +    PS +  +T T 
Sbjct: 1   MSLPNPPQREAIRYLD--GPLLVLAGAGSGKTRVITEKIAYLIESCGFSPSNIAAITFTN 58

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++                                           GL 
Sbjct: 59  KAAREMQERVTRLLAGRPAK-------------------------------------GLT 81

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T HA    I+++         +F+I D   +  ++ E   S 
Sbjct: 82  ISTFHALGVRILREEAKALGYKPNFSILDASDTFAIVSELAGSV 125


>gi|16767188|ref|NP_462803.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161617030|ref|YP_001590995.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167553318|ref|ZP_02347068.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994608|ref|ZP_02575699.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168234233|ref|ZP_02659291.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168244964|ref|ZP_02669896.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263196|ref|ZP_02685169.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168467671|ref|ZP_02701508.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822967|ref|ZP_02834967.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194447607|ref|YP_002047933.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194468767|ref|ZP_03074751.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251744|ref|YP_002148842.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197264134|ref|ZP_03164208.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198245972|ref|YP_002217850.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388093|ref|ZP_03214705.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207859124|ref|YP_002245775.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238912922|ref|ZP_04656759.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|17865672|sp|Q9L6S1|REP_SALTY RecName: Full=ATP-dependent DNA helicase rep
 gi|6960284|gb|AAF33474.1| 96% identity with E. coli ATP-dependent DNA helicase (REP)
           (SP:P09980); contains similarity to Pfam family PF00580
           (UvrD/REP helicase), score=817.3, E=5.5e-242, N=1
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422480|gb|AAL22762.1| rep helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161366394|gb|ABX70162.1| hypothetical protein SPAB_04858 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405911|gb|ACF66130.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194455131|gb|EDX43970.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195629985|gb|EDX48645.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197215447|gb|ACH52844.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197242389|gb|EDY25009.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197940488|gb|ACH77821.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605191|gb|EDZ03736.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205322218|gb|EDZ10057.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327553|gb|EDZ14317.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205331806|gb|EDZ18570.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336232|gb|EDZ22996.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340705|gb|EDZ27469.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348144|gb|EDZ34775.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710927|emb|CAR35293.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261249041|emb|CBG26901.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301160433|emb|CBW19962.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312915036|dbj|BAJ39010.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225438|gb|EFX50495.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322612996|gb|EFY09947.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617416|gb|EFY14316.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625592|gb|EFY22414.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627015|gb|EFY23808.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631269|gb|EFY28032.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638302|gb|EFY35001.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642848|gb|EFY39434.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646996|gb|EFY43498.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650384|gb|EFY46797.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656326|gb|EFY52620.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657551|gb|EFY53821.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665962|gb|EFY62143.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666701|gb|EFY62878.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671056|gb|EFY67186.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679237|gb|EFY75289.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681641|gb|EFY77668.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686032|gb|EFY82020.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192658|gb|EFZ77886.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197835|gb|EFZ82966.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203724|gb|EFZ88745.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205401|gb|EFZ90375.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210772|gb|EFZ95648.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215938|gb|EGA00671.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221431|gb|EGA05849.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227331|gb|EGA11498.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231736|gb|EGA15847.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236151|gb|EGA20228.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239612|gb|EGA23660.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244292|gb|EGA28300.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249611|gb|EGA33523.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250297|gb|EGA34183.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256504|gb|EGA40235.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259798|gb|EGA43431.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265206|gb|EGA48704.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268365|gb|EGA51837.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 674

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|87120740|ref|ZP_01076633.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121]
 gi|86163968|gb|EAQ65240.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121]
          Length = 682

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 39/171 (22%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +S+    QL A         V A AGSGKT ++  ++  L+       + ++ +T T  A
Sbjct: 12  MSKLNDRQLDAVKRIDGPLLVLAGAGSGKTSVITTKIAYLIQECGYKATNIVAVTFTNKA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV+ +++                                      +   GLK+ 
Sbjct: 72  AREMKERVVSMLSK-------------------------------------DESRGLKIS 94

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           T H     I+++   +A +   F + D + S  LI+E           + N
Sbjct: 95  TFHNLGLTILRKEYAKAGLKQGFTLFDSQDSLTLIKEILDKEFNEQTDEAN 145


>gi|332107681|gb|EGJ08905.1| UvrD/REP helicase [Rubrivivax benzoatilyticus JA2]
          Length = 675

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 38/154 (24%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               QL A         V A AGSGKT ++V ++ RLL A   P  +  +T T  AAAEM
Sbjct: 8   LNPAQLAAVHHLEGPCLVLAGAGSGKTRVIVHKIARLLQAGLEPRQIAAITFTNKAAAEM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R  +I+   +                                        L + T H+
Sbjct: 68  RERAKQIVGGRAAKD-------------------------------------LAISTFHS 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
               +++       +   F+I D +    ++ EA
Sbjct: 91  LGVRMLKTDGSRLGLKEQFSIFDSDDVLGVLREA 124


>gi|304373063|ref|YP_003856272.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1]
 gi|304309254|gb|ADM21734.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1]
          Length = 754

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 47/224 (20%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72
           D++S   + Q  A  +      + A AG+GKT +L +++  L+ A       +L LT T 
Sbjct: 15  DILSGLNTNQKAAVLENEHHLRIIAGAGTGKTSVLTKKIAYLIAAKITTAKKILALTFTN 74

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  +I A +                                         K
Sbjct: 75  KAANEMKERVKNVIGADA--------------------------------------NETK 96

Query: 133 VQTIHAFCEAIMQ---QFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           + T H+ C  I++   Q   +     N+  +F I DE   KK++++  +    S+  +  
Sbjct: 97  IFTFHSLCNLILKIESQQFKKIKEFENLDKNFNIIDERDQKKILKDVYEKLQFSLSNEEI 156

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLW 229
              +KA   I  + N E     I     N T  KL+  + +Y++
Sbjct: 157 PNFRKAIDFISYVKNKELTFEQIQANAQNSTEKKLVKIYKNYVY 200


>gi|241953371|ref|XP_002419407.1| ATP-dependent DNA helicase, putative [Candida dubliniensis CD36]
 gi|223642747|emb|CAX43001.1| ATP-dependent DNA helicase, putative [Candida dubliniensis CD36]
          Length = 859

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 84/211 (39%), Gaps = 38/211 (18%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPST 64
           S Q   + ++ ++  + + + A    R   + A  G+GKT +L+ RV  LL+  N  P  
Sbjct: 4   SNQVLGKILESLNANQRKAVTAPFNGR-LQIIAGPGTGKTKVLISRVAYLLIAENIRPDN 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           L+  T TK AA EM  R+ +++       D+++                           
Sbjct: 63  LIVTTFTKRAANEMIERLTKLVEGTDVNIDKLI--------------------------- 95

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                   + T H+ C  I++++    ++   + IADE    ++++    +     ++  
Sbjct: 96  --------IGTFHSICYRIIRKYGKLIDLE-DYTIADERDKSQILKTVLTNLSGEEVVTL 146

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNR 215
           N   + A  ++     +E+   L   +IS +
Sbjct: 147 NSFSEVALQKLRSHKANENYYGLDLAVISKK 177


>gi|145642218|ref|ZP_01797785.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021]
 gi|145273078|gb|EDK12957.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 22.4-21]
          Length = 670

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 43/186 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L       +++L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLKE-----DKDLRELISVI 138

Query: 196 LEISND 201
               ND
Sbjct: 139 SNWKND 144


>gi|296453651|ref|YP_003660794.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183082|gb|ADG99963.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 1340

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA 
Sbjct: 5   TPSAEQAAIIDAPVNADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +      S     ++   ++                           + T 
Sbjct: 65  ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF + I++Q+ L      +        + +L  E   S +     ++          +L
Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159

Query: 197 EISN 200
            +S+
Sbjct: 160 ALSD 163


>gi|260596007|ref|YP_003208578.1| ATP-dependent DNA helicase Rep [Cronobacter turicensis z3032]
 gi|260215184|emb|CBA27013.1| ATP-dependent DNA helicase rep [Cronobacter turicensis z3032]
          Length = 673

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             ++Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPAQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTMGR--------------------------KEAR-----------GLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D+     LI+E  +  +     ++   L++    I   
Sbjct: 87  LGLEIIKREYVALGMKSNFSLFDDTDQMALIKELTEGLVE----NDKVLLQQLISTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|330971986|gb|EGH72052.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 1230

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + + +   +     ++   S        L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIPSPDGLIAELREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|171920710|ref|ZP_02695904.2| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185179010|ref|ZP_02964760.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024022|ref|ZP_02996781.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518328|ref|ZP_03003841.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524317|ref|ZP_03004355.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867968|ref|ZP_03079965.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273561|ref|ZP_03206097.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554036|ref|YP_002284945.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550706|ref|ZP_03771655.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551585|ref|ZP_03772531.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903451|gb|EDT49740.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209099|gb|EDU06142.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188019050|gb|EDU57090.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998009|gb|EDU67106.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660157|gb|EDX53537.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660364|gb|EDX53624.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198250081|gb|EDY74861.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209541537|gb|ACI59766.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379400|gb|EEH01765.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379860|gb|EEH02222.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 743

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 55/164 (33%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ID     + ++   +       V A AG+GKT +L  R+  L+   + HPS +L  T T 
Sbjct: 5   IDYSRLNQEQKEAVTADLGPQLVIAGAGTGKTSVLTLRIAHLITEKHIHPSRILGFTFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV + I                                              
Sbjct: 65  KAADEMKERVGKTIGVSIPYL--------------------------------------- 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             T H+ C  I+QQ     N  ++  I D +  + L++E     
Sbjct: 86  -STFHSMCVKILQQDIHYLNYHNNIKIIDADDQEVLLKEIFDQL 128


>gi|86158232|ref|YP_465017.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774743|gb|ABC81580.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 725

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 42/206 (20%)

Query: 11  SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +  ++       +Q+   +       V A AGSGKT  L  RV RL+     P  +L LT
Sbjct: 14  ARALNYQGLLNDQQIAVVEAGDGPILVIAGAGSGKTRTLTWRVARLVADGVAPEGILLLT 73

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV           +E+   +  +I G                       
Sbjct: 74  FTNKAAREMLRRV-----------EEVCRVDTRRISG----------------------- 99

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                T H     ++++   E      ++I D E S+ ++  A      ++      +  
Sbjct: 100 ----GTFHHVAHEVLREHAAELGYQRGYSILDREDSRDVMTAAIAECGLAVGARRFPK-A 154

Query: 190 KAFYEILEISNDEDIETLISDIISNR 215
               +++ ++ +   +T ++D++++R
Sbjct: 155 DVLIDLVSMAVNT--QTPLADVLADR 178


>gi|260583198|ref|ZP_05850977.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127]
 gi|260093755|gb|EEW77664.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127]
          Length = 677

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 62/187 (33%), Gaps = 42/187 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L+     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  A
Sbjct: 6   LMKLNSQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIGKCGYSPKQIAAVTFTNKA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV   I                                       E   GL V 
Sbjct: 66  AREMKERVAHSIGK-------------------------------------EQSKGLLVS 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     I+++        S+  + DE+    L++E     L     ++ + L++    
Sbjct: 89  TFHTLGFDIIKREYKALGFKSNMTLFDEQDQFALLKELTADVLK----EDKDLLRELISV 144

Query: 195 ILEISND 201
           I    ND
Sbjct: 145 ISNWKND 151


>gi|165975830|ref|YP_001651423.1| exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165875931|gb|ABY68979.1| exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 1202

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             +A + A+AG+GKT  +    LRLLL    A+     +L +T TKAA  E+  R+   I
Sbjct: 12  NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71

Query: 87  TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            A      E  + +   I             + +A   L           + TIH+FC+ 
Sbjct: 72  KACRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++ QF  ++ +   F    +     L+    +     +          A  E L   N+ 
Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYLGTPNNA 189


>gi|153801076|ref|ZP_01955662.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3]
 gi|124123430|gb|EAY42173.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3]
          Length = 1208

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|254448414|ref|ZP_05061875.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015]
 gi|198262027|gb|EDY86311.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015]
          Length = 671

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 62/185 (33%), Gaps = 43/185 (23%)

Query: 19  QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           Q   +Q  A+        V A AGSGKT ++ +++ RL+      P  +  +T T  AA 
Sbjct: 2   QLNPQQHEATTYCAGHVLVLAGAGSGKTRVITEKIARLIGREGYEPQQIFAVTFTNKAAR 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   +                                      +E   GL + T 
Sbjct: 62  EMLERIHLQLG-------------------------------------IEASRGLSISTF 84

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H     I++Q          F I D   S  ++ E     L       N +   A ++I 
Sbjct: 85  HTLGLHIIRQEHELLGYKRGFTIFDSADSSAVLRE----LLRDGNEGFNGDEDSARWQIS 140

Query: 197 EISND 201
           ++ ND
Sbjct: 141 QLKND 145


>gi|194443787|ref|YP_002043150.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194402450|gb|ACF62672.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 674

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|204930185|ref|ZP_03221162.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320589|gb|EDZ05791.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 674

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|229847430|ref|ZP_04467530.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1]
 gi|229809668|gb|EEP45394.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1]
          Length = 671

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T S  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|197122458|ref|YP_002134409.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196172307|gb|ACG73280.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 726

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 42/206 (20%)

Query: 11  SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +  ++       +Q+   +       V A AGSGKT  L  RV RL+     P  +L LT
Sbjct: 14  ARALNYQGLLNDQQIAVVEAGDGPILVIAGAGSGKTRTLTWRVARLVADGVAPEGILLLT 73

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV           +E+   +  +I G                       
Sbjct: 74  FTNKAAREMLRRV-----------EEVCRVDTRRISG----------------------- 99

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                T H     ++++   E      ++I D E S+ ++  A      ++      +  
Sbjct: 100 ----GTFHHVAHEVLREHAAELGYQRGYSILDREDSRDVMTAAIAECGLAVGARRFPK-A 154

Query: 190 KAFYEILEISNDEDIETLISDIISNR 215
               +++ ++ +   +T ++D++++R
Sbjct: 155 DVLIDLVSMAVNT--QTPLADVVADR 178


>gi|56415773|ref|YP_152848.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56130030|gb|AAV79536.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 674

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|54310114|ref|YP_131134.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9]
 gi|46914553|emb|CAG21332.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9]
          Length = 1227

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 14/148 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL + +             +L +T T+AA AE+  R+  
Sbjct: 43  LIEASAGTGKTFTIASLYLRLLLGHGNAETRHASELTVDQILVVTFTEAATAELRDRIRA 102

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S +   I        D   A  +L+          + TIH FC+ ++
Sbjct: 103 RIHDAQIAFRRGFSNDPV-IAPLLTAIRDHKAAAQILLNAERQMDEAAIYTIHGFCQRML 161

Query: 145 QQFPLEAN--ITSHFAIADEEQSKKLIE 170
            Q   E+     + F + DE Q K L+ 
Sbjct: 162 TQNAFESGSRFNNEF-VTDESQLKSLVA 188


>gi|271502415|ref|YP_003335441.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech586]
 gi|270345970|gb|ACZ78735.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech586]
          Length = 674

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 43/207 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++ Q++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQHAVEFVTGPCLVLAGAGSGKTRVITQKIAHLIRGCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKETR-------------------------------------GLLIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L++E     L  + L N+++L +     L  
Sbjct: 87  LGLEIIKREYAALGMKSNFSLFDDQDQLALLKE-----LTELWLQNDKDLLQQLVSALSN 141

Query: 199 SNDEDIETLISDIISNRTALKLIFFFF 225
             ++ I+   +  ++     +L    +
Sbjct: 142 WKNDLIDPAQAAALARSERDRLFAHCY 168


>gi|115372354|ref|ZP_01459663.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|115370567|gb|EAU69493.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 774

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 43/195 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L      ++           V + AGSGKT ++ +RV  L+ +    P  +L +T T  A
Sbjct: 9   LEDLNPPQKEAVLHGEGPLLVLSGAGSGKTRVITRRVAHLVKVRRVFPWRILAVTFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+++++ A +H                                       L V 
Sbjct: 69  AREMRERLVQLLGAQAH--------------------------------------ELVVS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+    I+++      +T  F I D+     +++ A +       ++ + + ++  + 
Sbjct: 91  TFHSSAAMILRREAEAVGLTRSFVIYDDGDQLNIVKRAMR----EARVEPSMQPREILHR 146

Query: 195 ILEISNDEDIETLIS 209
           I +  N   +   + 
Sbjct: 147 IDQEKNAARLPDAMQ 161


>gi|66043948|ref|YP_233789.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254655|gb|AAY35751.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           syringae B728a]
          Length = 1230

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQCGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + + +   +     ++   S        L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIPSPDGLIAELREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|121726748|ref|ZP_01679966.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52]
 gi|121630782|gb|EAX63166.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52]
          Length = 1208

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|296127434|ref|YP_003634686.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563]
 gi|296019250|gb|ADG72487.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563]
          Length = 1124

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 24/209 (11%)

Query: 20  TKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
              +Q    +        +V+A+AG+GKT  + +  ++LL      S+++ +T TKAAA 
Sbjct: 5   LNKQQEDIINCFFDNGICFVNASAGTGKTSTITELYIKLLENREKVSSIVVITFTKAAAN 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   +       +                  +    + +   IL      K+ TI
Sbjct: 65  EMLLRIRLKVRNKISFVN---------------TAKEKDYWQKVYKDILTN---AKISTI 106

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            +F  +I  +  L   +  + +I   E +  + E  K   L  +   +  E  +  Y I 
Sbjct: 107 DSFANSIAMENALSLAMPPNASIL--EDNSDIKETLKDEILNVLNEVSYSETIRTIYRIY 164

Query: 197 EISNDEDI-ETLISDIISNRTALKLIFFF 224
              + +D  + ++S ++  +  LK I  F
Sbjct: 165 TEESKDDFADKILSFLLKIKPRLKTIDEF 193


>gi|310827141|ref|YP_003959498.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612]
 gi|308738875|gb|ADO36535.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612]
          Length = 1065

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 44/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              +Q       R+  V A  G+GKT  LV R+L LL      P+ +  +T T  AAAEM
Sbjct: 464 NAEQQEAVITARRAIAVIAGPGTGKTKTLVSRILHLLNERRVKPTEITAVTFTNKAAAEM 523

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +++   S                          AR +            + T H+
Sbjct: 524 RERLEKVLGKRS--------------------------ARQV-----------NIGTFHS 546

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  ++++          F +AD  ++ +  EE  +  
Sbjct: 547 LCHKLLKEH------RGGFTLADAFETLETAEETIRHF 578


>gi|251787802|ref|YP_003002523.1| ATP-dependent DNA helicase Rep [Dickeya zeae Ech1591]
 gi|247536423|gb|ACT05044.1| ATP-dependent DNA helicase Rep [Dickeya zeae Ech1591]
          Length = 674

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 45/202 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++ Q++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQHAVEFVTGPCLVLAGAGSGKTRVITQKIAHLIRGCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRQETR-------------------------------------GLLIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L++E     L  + L+N+++L +     L  
Sbjct: 87  LGLEIIKREYAALGMKSNFSLFDDQDQLALLKE-----LTELWLENDKDLLQQLVSALSN 141

Query: 199 SNDEDIE--TLISDIISNRTAL 218
             ++ I+     +   S R  L
Sbjct: 142 WKNDLIDPAQAAAQARSERDRL 163


>gi|205354517|ref|YP_002228318.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274298|emb|CAR39319.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 674

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|156935891|ref|YP_001439807.1| ATP-dependent DNA helicase Rep [Cronobacter sakazakii ATCC BAA-894]
 gi|156534145|gb|ABU78971.1| hypothetical protein ESA_03779 [Cronobacter sakazakii ATCC BAA-894]
          Length = 673

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             ++Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPAQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D+     LI+E  +  +     ++   L++    I   
Sbjct: 87  LGLEIIKREYAALGMKSNFSLFDDTDQMALIKELTEGLVE----NDKVLLQQLISTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|226358112|ref|YP_002787851.1| ATP-dependent nuclease subunit A (AddA),; UvrD/REP helicase,;
           ATP-dependent exoDNAse (Exonuclease V) beta subunit
           (RecB) [Deinococcus deserti VCD115]
 gi|226319755|gb|ACO47749.1| putative ATP-dependent nuclease subunit A (AddA),; putative
           UvrD/REP helicase,; putative ATP-dependent exoDNAse
           (Exonuclease V) beta subunit (RecB) [Deinococcus deserti
           VCD115]
          Length = 114

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 25/133 (18%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
             D    T ++      P  S  +SA AGSGKT +L +R+L L+     P  ++ +T T+
Sbjct: 7   LQDAAGFTPAQAQAIFSPG-SVAISAGAGSGKTRVLAERILNLVQLGVDPGQIVAVTFTE 65

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAAAE+  R+   + A +                               +  L +   ++
Sbjct: 66  AAAAELRERITRFVEARAEAQGGE------------------------WLGALASLPLMQ 101

Query: 133 VQTIHAFCEAIMQ 145
           V TIH  C  + +
Sbjct: 102 VSTIHGLCGRVAR 114


>gi|33242131|ref|NP_877072.1| hypothetical protein CpB0800 [Chlamydophila pneumoniae TW-183]
 gi|33236641|gb|AAP98729.1| UvrD [Chlamydophila pneumoniae TW-183]
          Length = 639

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 37/160 (23%)

Query: 17  ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           IS+    Q  A + P     V A AG+GKT ++  R+L L+     P  +L +T T  AA
Sbjct: 4   ISELNEAQRKAVTAPLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R++    + +     +                                    V T
Sbjct: 64  RELKERIVNQCASTNEFDVPM------------------------------------VCT 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            H+    I+++     N  ++F I D+  ++KLI+ A + 
Sbjct: 88  FHSLGVFILRRSINLLNRENNFTIYDQSDAEKLIKHALQQ 127


>gi|145637780|ref|ZP_01793430.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH]
 gi|145269025|gb|EDK08978.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH]
          Length = 671

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T S  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|322690607|ref|YP_004220177.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455463|dbj|BAJ66085.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 1343

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA 
Sbjct: 5   TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +      S     ++   ++                           + T 
Sbjct: 65  ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF + I++Q+ L      +        + +L  E   S +     ++          +L
Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159

Query: 197 EISN 200
            +S+
Sbjct: 160 ALSD 163


>gi|328884882|emb|CCA58121.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 919

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 31/182 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     V A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 26  GIPFTPEQTACITAPLAPQVVVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV   +        +++  +                         E PG  ++ 
Sbjct: 86  AGELAERVRTALVRAGVTDPDVIDPD-------------------------EPPGEPRIS 120

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +             L ++F  
Sbjct: 121 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----APGPYPALTRSFTT 175

Query: 195 IL 196
           ++
Sbjct: 176 LI 177


>gi|320178069|gb|EFW53049.1| ATP-dependent DNA helicase Rep [Shigella boydii ATCC 9905]
          Length = 673

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      +  +F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKVNFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  I  R  +
Sbjct: 146 LKTPSQAAASAIGERDRI 163


>gi|160895970|ref|YP_001561552.1| exodeoxyribonuclease V subunit beta [Delftia acidovorans SPH-1]
 gi|160361554|gb|ABX33167.1| exodeoxyribonuclease V, beta subunit [Delftia acidovorans SPH-1]
          Length = 1274

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 25/202 (12%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH----------------PSTLLCLTHTKAAA 75
            S  + A+AG+GKT  +    LRL+L +                  P  +L +T T+AA 
Sbjct: 24  GSRLIEASAGTGKTWTIAALYLRLVLGHGEGSLDGISSTAFERPLMPPDILVMTFTRAAT 83

Query: 76  AEMSHRVLEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            E+S R+ + +                 A +  ++   P  +   +A   L    E    
Sbjct: 84  RELSDRIRKRLIEAVQCFRGEAEPAPHDAFLHALREAYPEGAARERAAWRLAMAAECMDD 143

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + TI A+C+ ++++   ++   + F    E    +   EA +          ++EL  
Sbjct: 144 AAIHTIDAWCQRMLREHAFDSG--NLFDETLEPDESQRQTEAAQDYWRQQCYPLSDELLD 201

Query: 191 AFYEILEISND--EDIETLISD 210
              +I        +D+  L+ +
Sbjct: 202 EVLKIWPHVGALVDDMRALLRE 223


>gi|294506408|ref|YP_003570466.1| ATP-dependent DNA helicase [Salinibacter ruber M8]
 gi|294342736|emb|CBH23514.1| ATP-dependent DNA helicase [Salinibacter ruber M8]
          Length = 712

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 45/209 (21%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           TI+       +Q   A+       + A AG+GKT  L+ R+  L+     P  ++ LT T
Sbjct: 22  TIEYAEALNEQQYAAATAGEGPLLIVAGAGTGKTRTLIYRLAYLVETGTRPQQIVLLTFT 81

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA +M+ R           +  +L     K++G                         
Sbjct: 82  RRAANDMTAR-----------ASNLLDGRCEKVRG------------------------- 105

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--K 189
              T HAFC  +++Q         +F + D   +  ++   +         D  E    K
Sbjct: 106 --GTFHAFCLEVLRQHAEALGFPRNFTVLDAADAADVLSVIRTR---GEYGDGEERFPQK 160

Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218
              Y +   + + D ETL   I       
Sbjct: 161 NTLYSMFSSATNRD-ETLGETITKRYPQF 188


>gi|237803037|ref|YP_002888231.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274271|emb|CAX11066.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 634

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 38/163 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2   LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  RV        +    +                                    V
Sbjct: 62  AANELKERVQSQCRELGYSDVPM------------------------------------V 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I++      +  S+F I D+  S+KLI++  +  
Sbjct: 86  STFHSLSVYILRCSIHLLDRQSNFVIYDQSDSEKLIKQCLRKL 128


>gi|213692896|ref|YP_002323482.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524357|gb|ACJ53104.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320459071|dbj|BAJ69692.1| DNA helicase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 1343

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA 
Sbjct: 5   TPSAEQAAIIDAPVNADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +      S     ++   ++                           + T 
Sbjct: 65  ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF + I++Q+ L      +        + +L  E   S +     ++          +L
Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159

Query: 197 EISN 200
            +S+
Sbjct: 160 ALSD 163


>gi|182436134|ref|YP_001823853.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464650|dbj|BAG19170.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1162

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 31/184 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 16  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + + A      +++  +                           PG   + 
Sbjct: 76  AGELAERVRKALIAAGVTDPDVIDPD-------------------------NPPGEPTIS 110

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++ +  L   +     +  +    +L  +  +             L ++F  
Sbjct: 111 TYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLRE-----APGPYPALTRSFST 165

Query: 195 ILEI 198
           ++  
Sbjct: 166 LVSD 169


>gi|15618681|ref|NP_224967.1| DNA helicase [Chlamydophila pneumoniae CWL029]
 gi|15836305|ref|NP_300829.1| DNA helicase [Chlamydophila pneumoniae J138]
 gi|16752269|ref|NP_445637.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39]
 gi|4377080|gb|AAD18910.1| DNA Helicase [Chlamydophila pneumoniae CWL029]
 gi|7190013|gb|AAF38869.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39]
 gi|8979145|dbj|BAA98980.1| DNA helicase [Chlamydophila pneumoniae J138]
          Length = 639

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 37/160 (23%)

Query: 17  ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           IS+    Q  A + P     V A AG+GKT ++  R+L L+     P  +L +T T  AA
Sbjct: 4   ISELNEAQRKAVTAPLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R++    + +     +                                    V T
Sbjct: 64  RELKERIVNQCASTNEFDVPM------------------------------------VCT 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            H+    I+++     N  ++F I D+  ++KLI+ A + 
Sbjct: 88  FHSLGVFILRRSINLLNRENNFTIYDQSDAEKLIKHALQQ 127


>gi|134108923|ref|XP_776576.1| hypothetical protein CNBC0690 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259256|gb|EAL21929.1| hypothetical protein CNBC0690 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1089

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 40/163 (24%)

Query: 16  LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
            ++     QL A  + P+    + A  GSGKT +L  RV  L+  +   P+ ++ +T T 
Sbjct: 13  YLASLNQAQLKAVTASPSVPLQILAGPGSGKTRVLTCRVAYLVQHHKYSPNEIVAVTFTN 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +A EM  R+ +++                                       +    L 
Sbjct: 73  KSANEMRKRLQKLLGD-------------------------------------KQADQLV 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T HA C   ++++    N++++F IAD E  KK++    KS
Sbjct: 96  LGTFHATCVKYLRRYGKLINLSNNFVIADAEDCKKIMSGILKS 138


>gi|325265844|ref|ZP_08132530.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394]
 gi|324982482|gb|EGC18108.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394]
          Length = 684

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 38/158 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q          +V A AGSGKT +++++++ ++      P  +  +T T  AA
Sbjct: 20  MKLNPPQQEAVEYLGGPLFVLAGAGSGKTRVIIEKIVHMITRCGYKPYHIAAITFTNKAA 79

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +                                       E   GL + T
Sbjct: 80  NEMQERIAHRLGK-------------------------------------EQTRGLTIST 102

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            H+    I+++         +F++ D   S+K++ E  
Sbjct: 103 FHSLGMRILREDAPSVGYKRNFSVLDASDSQKILTEIL 140


>gi|320088329|emb|CBY98089.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 674

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|291615695|ref|YP_003518437.1| Rep [Pantoea ananatis LMG 20103]
 gi|291150725|gb|ADD75309.1| Rep [Pantoea ananatis LMG 20103]
 gi|327395960|dbj|BAK13382.1| ATP-dependent DNA helicase Rep [Pantoea ananatis AJ13355]
          Length = 702

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM
Sbjct: 33  NSSQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREM 92

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 93  KERVAQTLGR--------------------------KEAR-----------GLMISTFHT 115

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D++    L+++     L     ++   L++    I   
Sbjct: 116 LGLEIIKREYVALGMKSNFSLFDDQDQMALLKDLTSEWLE----EDKTLLQQLISTISNW 171

Query: 199 SND 201
            ND
Sbjct: 172 KND 174


>gi|16762217|ref|NP_457834.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143706|ref|NP_807048.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213051683|ref|ZP_03344561.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213621483|ref|ZP_03374266.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213648366|ref|ZP_03378419.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|25290776|pir||AI0922 ATP-dependent DNA helicase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504521|emb|CAD09403.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139341|gb|AAO70908.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 674

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|330827758|ref|YP_004390710.1| ATP-dependent DNA helicase Rep [Aeromonas veronii B565]
 gi|328802894|gb|AEB48093.1| ATP-dependent DNA helicase Rep [Aeromonas veronii B565]
          Length = 670

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 44/186 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  ++E +     +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 3   LNPNQNEAVKYV--SGPCLVLAGAGSGKTRVITNKIAYLVQQCGYSARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL V T
Sbjct: 61  REMKERVGQTLGR--------------------------KEAR-----------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++     N+ ++F++ D+     L++E  +  L     ++ ++L     +I
Sbjct: 84  FHTLGLDIIRREHKSLNLKANFSLFDDTDQLALLKELTEDELD----NDKDKLSALISQI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|294655436|ref|XP_457572.2| DEHA2B14410p [Debaryomyces hansenii CBS767]
 gi|199429955|emb|CAG85583.2| DEHA2B14410p [Debaryomyces hansenii]
          Length = 934

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 39/193 (20%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
             ++ ++  + + ++A    R   + A  G+GKT +L+ RV  LL+     P  ++  T 
Sbjct: 14  RVLEGLNAKQKQAVVAPSVER-LQIIAGPGTGKTKVLISRVAYLLIKEKLSPQCIIVTTF 72

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TK AA EM  R+ E++       D+IL                                 
Sbjct: 73  TKKAANEMIERLGELLKDTPIKVDKIL--------------------------------- 99

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T H+ C  I++ +  +  I+  + IADE  SK+++EE     L+   L    EL  
Sbjct: 100 --IGTFHSICYRIIKIYGKKIAIS-DYNIADERDSKQILEEMIMK-LSETDLKYISELPD 155

Query: 191 AFYEILEISNDED 203
              EI + + ++D
Sbjct: 156 RQTEIFKSNKEDD 168


>gi|254520983|ref|ZP_05133038.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14]
 gi|219718574|gb|EED37099.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14]
          Length = 1226

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 17/175 (9%)

Query: 20  TKSEQLLASDPTRSA------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
            +  Q +A DP  +        + A+AG+GKT  L     RL++        +L +T T 
Sbjct: 7   DEESQRMAGDPYLTLPLQGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTD 66

Query: 73  AAAAEMSHRVLEIITAWSHLSD------EILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           AA  E+  R+ E +   + L D      E     +T+   ++  +     A  L   +  
Sbjct: 67  AATQELRKRIRERLALAARLVDLEPAEGEAPDVRLTREVLQRHLQGGTESAATLKRRLQV 126

Query: 127 TPGG---LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
                    + TIH FC  ++++  LE+  T           ++L+EE       
Sbjct: 127 AADEIDLASIFTIHGFCTRVLREHALESGHTFDPPELLASD-RELLEELAADLWR 180


>gi|225621491|ref|YP_002722750.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1]
 gi|225216312|gb|ACN85046.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1]
          Length = 1131

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 14/196 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++  + + +   +     +V+A+AG+GKT  + +  L+LL      S ++ +T TKAAA 
Sbjct: 5   LNDKQKDIIKCFEDNGLCFVNASAGTGKTSTITEIYLKLLENKEKVSNIVVITFTKAAAN 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   +    +  DEI +    K   +K    D+ K         +     K+ TI
Sbjct: 65  EMLFRIRSKVR---NKIDEIKNTNDEKSIKEKKYWQDVYK---------DILTSAKISTI 112

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           +AF  +I  +  +  +I  + +I   E S  + E  K   L  +    + E+ +  Y I 
Sbjct: 113 NAFANSIAMENAMYLSIPPNMSIL--EDSIDIQETLKSEILNILRQSKHAEIIRTLYRIS 170

Query: 197 EISNDEDIETLISDII 212
              +       I   +
Sbjct: 171 TEDSKNQFAQRILHFL 186


>gi|167947687|ref|ZP_02534761.1| DNA helicase II [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 127

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
          + S  +D +++ + + + A  P  +  + A AGSGKT +LV R+  L+ +    P ++L 
Sbjct: 2  DVSPILDPLNEAQRDAVSA--PVGNLLILAGAGSGKTRVLVHRIAWLMAVEATSPWSILA 59

Query: 68 LTHTKAAAAEMSHRVLEIITA 88
          +T T  AA EM  R+ E++  
Sbjct: 60 VTFTNKAAKEMRGRIEELMGQ 80


>gi|224585735|ref|YP_002639534.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470263|gb|ACN48093.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 674

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDSDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145


>gi|159039658|ref|YP_001538911.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918493|gb|ABV99920.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 1162

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 32/179 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E ++ + L + T+ +  + + P     V A AGSGKT  +  RV+ L+  +  HP  +L 
Sbjct: 27  ELAKLLRLPAPTREQAAVIAAPVEPLLVVAGAGSGKTETMAARVVWLVANSYVHPEQVLG 86

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA E++HRV   ++               +    +P                  
Sbjct: 87  LTFTRKAAGELAHRVRARLSQLVRRLGRRGRDPQDESLAGEP------------------ 128

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                + T H++   ++ +  L A             + +L+ EA +  L  +++ N +
Sbjct: 129 ----TIATYHSYAGRVVTEHGLRAGYEP---------ATRLLTEASRWQLVDLIVRNYD 174


>gi|256830236|ref|YP_003158964.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
 gi|256579412|gb|ACU90548.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
          Length = 724

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ID  +     Q   A+       V A AGSGKT  +V R+ RL+ +   P+ +L LT T+
Sbjct: 3   IDYQNDLNPAQYEAATTLEGPVLVIAGAGSGKTRTVVYRLARLVESGVSPAEILLLTFTR 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A++EM HR   ++                                            ++
Sbjct: 63  KASSEMLHRAGGLLGHQGLGH-------------------------------------VR 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             T H F  ++++Q            + D   +++++ +AK   
Sbjct: 86  GGTFHGFAYSLLKQHAGLLGFERGATVMDRSDAEEILSQAKDRL 129


>gi|148826716|ref|YP_001291469.1| ATP-dependent DNA helicase [Haemophilus influenzae PittEE]
 gi|148716876|gb|ABQ99086.1| ATP-dependent DNA helicase [Haemophilus influenzae PittEE]
          Length = 671

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAYLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE+    L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEQDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|330901566|gb|EGH32985.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 784

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++   S        L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIADLREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|322688621|ref|YP_004208355.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459957|dbj|BAJ70577.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
          Length = 1343

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA 
Sbjct: 5   TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +      S     ++   ++                           + T 
Sbjct: 65  ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF + I++Q+ L      +        + +L  E   S +     ++          +L
Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159

Query: 197 EISN 200
            +S+
Sbjct: 160 ALSD 163


>gi|160877210|ref|YP_001556526.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS195]
 gi|160862732|gb|ABX51266.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS195]
          Length = 685

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 16  MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIGYLVEKCGYKARNIAAVTFTNKAA 75

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 76  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L     D +++L KA    
Sbjct: 99  FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKALAST 153

Query: 196 LE 197
           + 
Sbjct: 154 IS 155


>gi|145297194|ref|YP_001140035.1| ATP-dependent DNA helicase Rep [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849966|gb|ABO88287.1| ATP-dependent DNA helicase Rep [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 670

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT ++  ++  L+     +   +  +T T  AA
Sbjct: 1   MKLNPNQNEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYNARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL V T
Sbjct: 61  REMKERVGQTLGR--------------------------KEAR-----------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++     N+ ++F++ D+     L++E  ++ L     ++ ++L     +I
Sbjct: 84  FHTLGLDIIRREHKSLNLKANFSLFDDTDQLALLKELTEAELD----NDKDKLSALISQI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|239813731|ref|YP_002942641.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239800308|gb|ACS17375.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 701

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 38/151 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++Q   +       V A AGSGKT ++  ++ RL+ A   P  +  +T T  AA+EM  R
Sbjct: 8   AQQEAVNYLHGPCLVLAGAGSGKTRVITHKIGRLIQAGLEPKRIAAITFTNKAASEMRER 67

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              +I                             +A+H++           + T HA   
Sbjct: 68  AKGLIG---------------------------REAKHVV-----------ICTFHALGV 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            +M++      +   F+I D +   K++++A
Sbjct: 90  RMMREDGAVLGLKPAFSILDSDDVTKILKDA 120


>gi|319791429|ref|YP_004153069.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315593892|gb|ADU34958.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 704

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 38/151 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++Q   +       V A AGSGKT ++  ++ RL+ A   P  +  +T T  AAAEM  R
Sbjct: 8   AQQEAVNYMHGPCLVLAGAGSGKTRVITHKIGRLIQAGLEPKRIAAITFTNKAAAEMRER 67

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
             ++I                              AR ++           V T HA   
Sbjct: 68  AKDLIG---------------------------RDARKVI-----------VCTFHALGV 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            +M++      +   F+I D +   K++++A
Sbjct: 90  RMMREDGAVLGLKPAFSILDSDDVTKILKDA 120


>gi|291517284|emb|CBK70900.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Bifidobacterium
           longum subsp. longum F8]
          Length = 1343

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA 
Sbjct: 5   TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +      S     ++   ++                           + T 
Sbjct: 65  ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF + I++Q+ L      +        + +L  E   S +     ++          +L
Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159

Query: 197 EISN 200
            +S+
Sbjct: 160 ALSD 163


>gi|32033668|ref|ZP_00133979.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207767|ref|YP_001052992.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae L20]
 gi|126096559|gb|ABN73387.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 672

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L        L  ++ +N  E K     +
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135

Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +   ++   + L  +++    R   + +F  F  L++ ++   +    
Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYQLYQNQLKAYNALDF 183


>gi|307260740|ref|ZP_07542429.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869579|gb|EFN01367.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 672

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L        L  ++ +N  E K     +
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135

Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +   ++   + L  +++    R   + +F  F  L++ ++   +    
Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYQLYQNQLKAYNALDF 183


>gi|227546375|ref|ZP_03976424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622378|ref|ZP_04665409.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|227213356|gb|EEI81228.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514375|gb|EEQ54242.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 1343

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA 
Sbjct: 5   TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +      S     ++   ++                           + T 
Sbjct: 65  ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF + I++Q+ L      +        + +L  E   S +     ++          +L
Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159

Query: 197 EISN 200
            +S+
Sbjct: 160 ALSD 163


>gi|197117725|ref|YP_002138152.1| UvrD superfamily ATP-dependent helicase [Geobacter bemidjiensis
           Bem]
 gi|197087085|gb|ACH38356.1| ATP-dependent helicase, UvrD superfamily [Geobacter bemidjiensis
           Bem]
          Length = 678

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +DL      +         +  V A AGSGKT ++  R+  L+L     P  +L +T T
Sbjct: 1   MLDLSRLNPEQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLILDKKVPPDQVLAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                       +   G+
Sbjct: 61  NKAAKEMKERVEHLVGR-------------------------------------KQSKGI 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    ++++         +F+I        L+ +  +  
Sbjct: 84  VLSTFHSLGVRVLKRDIERLGYKKNFSIYSTADQVGLVRQIVREV 128


>gi|254821918|ref|ZP_05226919.1| hypothetical protein MintA_18442 [Mycobacterium intracellulare ATCC
           13950]
          Length = 400

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 24/162 (14%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
            E +  + L   T+ +  + + P     V A AG+GKT  +  RV+ L+    A P+ +L
Sbjct: 27  SELACALGLFPPTEEQSAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAEPAQVL 86

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+ AA ++  RV   +   + +    +     + +G                    
Sbjct: 87  GLTFTRKAAGQLLRRVRSRLARLAGVGLGPVGDAAAEPEGAPV----------------- 129

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                 + T HAF  ++++ + L   +     +  E +  +L
Sbjct: 130 ------ISTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQL 165


>gi|320103549|ref|YP_004179140.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
 gi|319750831|gb|ADV62591.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
          Length = 686

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 40/163 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L+   + ++L A+ P     + A  GSGKT ++  RV  L+     P ++L  T T+ AA
Sbjct: 20  LVGLNEVQRLAAAAPDGVNLILAGPGSGKTRVITHRVAWLIGQGVAPESILLTTFTRRAA 79

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+  ++   +                                        +   T
Sbjct: 80  REMVARLSSLVGPAA--------------------------------------DQVWAGT 101

Query: 136 IHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H     ++++  F       S+F+I D E +  L+ +A    
Sbjct: 102 FHQIANRLLRRREFAEALGYQSNFSILDAEDALDLVAQAIDEL 144


>gi|23465762|ref|NP_696365.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705]
 gi|23326449|gb|AAN25001.1| widely conserved ATP-dependent DNA helicase; Rep-like protein
           [Bifidobacterium longum NCC2705]
          Length = 1343

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA 
Sbjct: 5   TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +      S     ++   ++                           + T 
Sbjct: 65  ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF + I++Q+ L      +        + +L  E   S +     ++          +L
Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159

Query: 197 EISN 200
            +S+
Sbjct: 160 ALSD 163


>gi|303248300|ref|ZP_07334562.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302490325|gb|EFL50237.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 1078

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 61/166 (36%), Gaps = 30/166 (18%)

Query: 34  AWVSANAGSGKTHILVQRVLRL---------------LLANAHPSTLLCLTHTKAAAAEM 78
             V A+AGSGKTH L +R + L               L A      +L +T T  AAAEM
Sbjct: 3   IQVKASAGSGKTHALTERFISLALRTARNLPRSCAGSLEAGYALPEILAVTFTNKAAAEM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +   +   D               +     KAR  L  +L     L ++TI +
Sbjct: 63  RERVFTRLKKIALGLDGA-------------DADSRGKARDELEELLVHAERLNIRTIDS 109

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
               + + F L+  +   F  A  +   +L+ +      A +  D 
Sbjct: 110 LLFLLARIFALDLGLRPDFEPAFND--AELLSDVYDRLAARLPEDP 153


>gi|312133222|ref|YP_004000561.1| uvrd3 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772423|gb|ADQ01911.1| UvrD3 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1343

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 26/180 (14%)

Query: 22  SEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
            +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA E+  
Sbjct: 9   EQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLE 68

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV   +      S     ++   ++                           + T  AF 
Sbjct: 69  RVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTYDAFF 103

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           + I++Q+ L      +        + +L  E   S +     ++          +L +S+
Sbjct: 104 QTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVLALSD 163


>gi|58265500|ref|XP_569906.1| ATP-dependent DNA helicase pcra [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57226138|gb|AAW42599.1| ATP-dependent DNA helicase pcra, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 982

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 40/163 (24%)

Query: 16  LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
            ++     QL A  + P+    + A  GSGKT +L  RV  L+  +   P+ ++ +T T 
Sbjct: 13  YLASLNQAQLKAVTASPSVPLQILAGPGSGKTRVLTCRVAYLVQHHKYSPNEIVAVTFTN 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +A EM  R+ +++                                       +    L 
Sbjct: 73  KSANEMRKRLQKLLGD-------------------------------------KQADQLV 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + T HA C   ++++    N++++F IAD E  KK++    KS
Sbjct: 96  LGTFHATCVKYLRRYGKLINLSNNFVIADAEDCKKIMSGILKS 138


>gi|238794290|ref|ZP_04637903.1| ATP-dependent DNA helicase rep [Yersinia intermedia ATCC 29909]
 gi|238726374|gb|EEQ17915.1| ATP-dependent DNA helicase rep [Yersinia intermedia ATCC 29909]
          Length = 673

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 43/201 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D +    L+++     L     D+   L++   +I   
Sbjct: 87  LGLEIIKKEYVALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142

Query: 199 SND-EDIETLISDIISNRTAL 218
            ND  D     +   S R  L
Sbjct: 143 KNDLLDPAGAAAQARSERDKL 163


>gi|317498206|ref|ZP_07956507.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894561|gb|EFV16742.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 655

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 54/162 (33%), Gaps = 41/162 (25%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L+ Q    QL A   T     V A AGSGKT  L  R   L+      P  +LC+T T  
Sbjct: 32  LLCQLNQAQLEAVTSTEGFIRVIAGAGSGKTRALSHRFAFLVNEIGILPGNILCVTFTNK 91

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM HR+  +I                                              +
Sbjct: 92  AANEMRHRIHNLIADNDTGY---------------------------------------I 112

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H FC +I+Q+         +F + D +    +++   + 
Sbjct: 113 NTFHGFCVSILQEDSHAIQYPKNFLVLDNQDIDSMLKIIYEE 154


>gi|303252517|ref|ZP_07338680.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247266|ref|ZP_07529315.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648485|gb|EFL78678.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306856239|gb|EFM88393.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 672

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L        L  ++ +N  E K     +
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135

Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +   ++   + L  +++    R   + +F  F  L++ ++   +    
Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYQLYQNQLKAYNALDF 183


>gi|46191135|ref|ZP_00206689.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium
           longum DJO10A]
 gi|189439817|ref|YP_001954898.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|189428252|gb|ACD98400.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
          Length = 1343

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 26/184 (14%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA 
Sbjct: 5   TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +      S     ++ + ++                           + T 
Sbjct: 65  ELLERVSAAVAGDMAGSTTATVSDRSFLKPA-------------------------IFTY 99

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF + I++Q+ L      +        + +L  E   S +     ++          +L
Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159

Query: 197 EISN 200
            +S+
Sbjct: 160 ALSD 163


>gi|325963968|ref|YP_004241874.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470055|gb|ADX73740.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 1201

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 24/213 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  + S P     V A AGSGKT  +  RV+ L+      P  +L +T T+ AA E
Sbjct: 48  PTPEQSAIISSPLAPRLVIAGAGSGKTATMADRVVWLVANGWVKPEEVLGVTFTRKAAGE 107

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL--KVQT 135
           ++ R+   +            A + ++ G+     D      L    L     L  KV T
Sbjct: 108 LASRIRAKL------------AALQRLAGQDTVSQDQEN--RLFPDGLPGSDALEPKVST 153

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI--MLDNNEELKKAFY 193
            H+F   I+  + L   +     +    Q+ +L  E  ++              L KA  
Sbjct: 154 YHSFASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVVEAYDGEYGHFRAAKSTLVKAVI 213

Query: 194 EIL-----EISNDEDIETLISDIISNRTALKLI 221
           ++       +   ED+E  +   +S+  AL  +
Sbjct: 214 QLAGECAEHLQEPEDVEAWLMARLSDFEALPYL 246


>gi|261211432|ref|ZP_05925720.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341]
 gi|260839387|gb|EEX66013.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341]
          Length = 1208

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL++        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVIGHGCVETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F         +L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178


>gi|237746116|ref|ZP_04576596.1| ATP-dependent exoDNAse beta subunit [Oxalobacter formigenes HOxBLS]
 gi|229377467|gb|EEO27558.1| ATP-dependent exoDNAse beta subunit [Oxalobacter formigenes HOxBLS]
          Length = 1253

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 16/190 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT  +    LRLLL        +L +T T+AA  E+  R+   I       
Sbjct: 19  LIEASAGTGKTWNIGGLYLRLLLEKKREVREILVVTFTRAATDELRDRIRSRIGRALAYL 78

Query: 87  -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
               +   D  +   + K      +  +M+    LL    ++     + TIH+FC+  + 
Sbjct: 79  EGRAADTDDGFVEKLLEKRMAAGDDPQEMT---ALLRLAFQSFDQAAIFTIHSFCQRALA 135

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFYEILEISNDEDI 204
                +     F++  E    +L+ EA        +          A+ E    + D  +
Sbjct: 136 LSAFSSG--QAFSVKAEADDSELVREAVNDFWRRHVAGGRLSPALSAWLEKKRFTPDR-L 192

Query: 205 ETLISDIISN 214
           E L+   ++ 
Sbjct: 193 EALLRRHLAR 202


>gi|300689860|ref|YP_003750855.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
 gi|299076920|emb|CBJ49533.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
          Length = 705

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++   
Sbjct: 21  DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRNIAAVTFTNKAAKEMQERVAKLMDGK 80

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +    + +  +                              L V T H+    I++    
Sbjct: 81  TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111

Query: 150 EANITSHFAIADEEQSKKLIEE 171
              +   F+I D +    +I+E
Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133


>gi|241759897|ref|ZP_04757997.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114]
 gi|241319905|gb|EER56301.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114]
          Length = 561

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 37/203 (18%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92
            + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R+   +     + 
Sbjct: 19  LIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVL 78

Query: 93  ---------------------------SDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
                                       D+ L+  I    G++  +    +    L   L
Sbjct: 79  NEIQTLGGEPEHISDGLNTYYDKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAAL 138

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--------EEAKKSTL 177
                  + TIH FC+ +++ +           ++D+ + + LI        + A  +TL
Sbjct: 139 SQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTL 198

Query: 178 ASIMLDNNEELKKAFYEILEISN 200
           A ++ D     ++   EI   + 
Sbjct: 199 AQLVFDRKCTPEEMLAEIKSYTG 221


>gi|33593011|ref|NP_880655.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33563386|emb|CAE42260.1| probable ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
          Length = 697

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 35/168 (20%)

Query: 15  DLISQTKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           D +++    Q  A+        +++  V A AGSGKT+ L  RV  L+L  A P  +L L
Sbjct: 14  DPLAELNPAQREAAAYGVDAPASQALLVIAGAGSGKTNTLAHRVAHLILHGADPQRMLLL 73

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AA EM  RV  ++                                  L      P
Sbjct: 74  TFSRRAAQEMERRVGGVLQRVMG-----------------------------LRAGHAAP 104

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 T H+    +++       ++  F + D   ++ L+   +   
Sbjct: 105 ALPWAGTFHSVGARLLRDCAPRIGLSEAFTVHDRGDAEDLMGIVRHEL 152


>gi|297202230|ref|ZP_06919627.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148066|gb|EDY54287.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 31/191 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 35  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 94

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +        +++  +                           PG   + 
Sbjct: 95  AGELAERVRKALVKAGVTDPDVIDPD-------------------------NPPGEPVIS 129

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +             L ++F +
Sbjct: 130 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----APGPYPALTRSFAD 184

Query: 195 ILEISNDEDIE 205
           ++      D E
Sbjct: 185 LVSDLLTLDAE 195


>gi|332184092|gb|AEE26346.1| ATP-dependent DNA helicase Rep [Francisella cf. novicida 3523]
          Length = 671

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 38/161 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           L +  K +Q           V A AGSGKT ++++++  L+    +P  ++L +T T  A
Sbjct: 2   LNNLNKQQQQAVKYIATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV   +                          D  K++           GL + 
Sbjct: 62  AKEMQERVKSRL--------------------------DKEKSK-----------GLMIS 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+   +I+++   E     +F + D   S  LI +    
Sbjct: 85  TFHSLGLSILKKHFSELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|121605345|ref|YP_982674.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120594314|gb|ABM37753.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 1141

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 38/150 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++   A+    +  + A  G+GKT  LVQR+  LL     P ++L LT +  AA E+S R
Sbjct: 203 TQIAAANHRNTAFQLQAGPGTGKTRTLVQRIQSLLTDGVDPMSILVLTFSNKAANELSER 262

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
                                                 L  +  +    + + T HAF  
Sbjct: 263 --------------------------------------LAASNPKAAAAMWIGTFHAFGL 284

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            I+++F  +  + +   + D  +  +L+E+
Sbjct: 285 DIVRRFHDKLGLPAGPRLIDRSEGIELLED 314


>gi|311281536|ref|YP_003943767.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae SCF1]
 gi|308750731|gb|ADO50483.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae SCF1]
          Length = 673

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------QEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  EIIKREFAALGMKSNFSLFDDTDQTALLKELTEGLID----DDKVVLQQLISTISNWKND 145

Query: 202 -EDIETLISDIISNRTAL 218
            +      +  +  R  +
Sbjct: 146 LKTPAQAAAGALGERDRI 163


>gi|85859303|ref|YP_461505.1| exodeoxyribonuclease V subunit beta [Syntrophus aciditrophicus SB]
 gi|85722394|gb|ABC77337.1| exodeoxyribonuclease V beta chain [Syntrophus aciditrophicus SB]
          Length = 1230

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW--SH 91
            + ANAG+GKT+ +    LRL++ +A     +L +T+T AA  E+  R+   ++    + 
Sbjct: 16  LIEANAGTGKTYAISGLFLRLIVEHALQVGEILVMTYTVAATEELKDRIRCTLSRALEAL 75

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               +    +     +       + AR  L T L       + TIH FC+  +Q+   E+
Sbjct: 76  GHGRVEDLFLDSFVRRLAEDDRTNSARRRLATALRDFDEAAIFTIHGFCQRTLQENAFES 135

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           + T +  +    +S+K+ +   +        +   EL    Y +   +N     + +  I
Sbjct: 136 HSTFNAELI--TESEKITDLILQDFWRRHFYEAQPELVA--YALETKNNLAGYRSFLRQI 191

Query: 212 ISNRT 216
            S+  
Sbjct: 192 SSHPD 196


>gi|256421211|ref|YP_003121864.1| exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588]
 gi|256036119|gb|ACU59663.1| Exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588]
          Length = 1152

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%)

Query: 26  LASDPTR-SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83
            A+ P + S  + A+AG+GKT+ +   VLRL+L        +L +T TKAA AE+  R+ 
Sbjct: 12  AATVPLQDSNLIEASAGTGKTYSIAILVLRLVLENGLSIKEILMVTFTKAAVAELEERIR 71

Query: 84  EIITAWSHLSD--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
             +     +S   E     I ++  +   ++ ++  +  L   +       V TIH+FC+
Sbjct: 72  LFVRTAYKISQGQETRDENIFRLVEEAVERNGLAAVQQQLRDAVLFLDETAVLTIHSFCQ 131

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
             + +F  E +      +   + +K LI E  +      +             +LE   +
Sbjct: 132 KTLNEFAFETDQLFGAEMI--QDTKTLIAEEVQKFWRKYVT-------TLHIRLLEKVWE 182

Query: 202 EDIETLISDIISNRTALKLIFFFF-SYLWRRKIIEKSLW 239
            D+   I+  ++     K  + +     +  K  E+  W
Sbjct: 183 PDMMEGINVALNEHMGGKRYYAYQPGKRYAIKQKEQEEW 221


>gi|237807041|ref|YP_002891481.1| ATP-dependent DNA helicase Rep [Tolumonas auensis DSM 9187]
 gi|237499302|gb|ACQ91895.1| ATP-dependent DNA helicase Rep [Tolumonas auensis DSM 9187]
          Length = 676

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 41/184 (22%)

Query: 20  TKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
               QL A    +    V A AGSGKT ++  ++  L+   +     +  +T T  AA E
Sbjct: 3   LNPRQLDAMHYVSGPCLVLAGAGSGKTRVITAKIAYLIRECSYQARHIFAVTFTNKAARE 62

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV + +                             +AR           GL V T H
Sbjct: 63  MKERVAQTLGR--------------------------REAR-----------GLTVSTFH 85

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +    ++++      + ++F++ D+     LI+E  ++     +  N E L++    I  
Sbjct: 86  SLGLDLIRREHQHLQLKANFSLFDDTDQMSLIKELTEA--DPELQGNKELLQQLVQTISR 143

Query: 198 ISND 201
             ND
Sbjct: 144 YKND 147


>gi|89898806|ref|YP_515916.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta
           [Chlamydophila felis Fe/C-56]
 gi|89332178|dbj|BAE81771.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta
           [Chlamydophila felis Fe/C-56]
          Length = 1045

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 27  ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSH 80
             +P  S     ++ A+AG+GKT  + Q +LR LL         +L +T T AA  E+  
Sbjct: 6   IFNPQTSIHGKYFLEASAGTGKTFTIEQIILRALLEGSVTRTENILAVTFTNAATNELKL 65

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ + +          LS     +    P   D+ +    +   L T   + + TIH FC
Sbjct: 66  RIQDNLKRALSQLKSSLSDPSQPLPPYLPEPCDVKQLYMQIRNALATIDRMAIFTIHGFC 125

Query: 141 EAIMQQFPLEANITS 155
             ++Q    +  IT 
Sbjct: 126 NHVLQLHFPDMQITQ 140


>gi|329939647|ref|ZP_08288948.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301217|gb|EGG45112.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 1244

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 31/184 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +      P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 16  GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +        + +  +                           PG   + 
Sbjct: 76  AGELAERVRKALVRAGVTDPDAIDPD-------------------------NPPGEPLIS 110

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +             L ++F +
Sbjct: 111 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----APGPYPALTRSFPD 165

Query: 195 ILEI 198
           ++  
Sbjct: 166 LVSD 169


>gi|304412235|ref|ZP_07393844.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS183]
 gi|307306979|ref|ZP_07586719.1| ATP-dependent DNA helicase Rep [Shewanella baltica BA175]
 gi|304349501|gb|EFM13910.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS183]
 gi|306910557|gb|EFN40987.1| ATP-dependent DNA helicase Rep [Shewanella baltica BA175]
          Length = 670

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIGYLVEKCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L     D +++L KA    
Sbjct: 84  FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKALAST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|153002493|ref|YP_001368174.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS185]
 gi|151367111|gb|ABS10111.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS185]
          Length = 670

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIGYLVEKCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L     D +++L KA    
Sbjct: 84  FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKALAST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|167767205|ref|ZP_02439258.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1]
 gi|167711180|gb|EDS21759.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1]
          Length = 745

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 55/162 (33%), Gaps = 41/162 (25%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L+ Q   +QL A   T     V A AGSGKT  L  R   L+      P  +LC+T T  
Sbjct: 32  LLCQLNQKQLEAVTSTEGFIRVIAGAGSGKTRALSHRFAFLVNEIGILPGNILCVTFTNK 91

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM HR+  +I                                              +
Sbjct: 92  AANEMRHRIHNLIADNDTGY---------------------------------------I 112

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H FC +I+Q+         +F + D +    +++   + 
Sbjct: 113 NTFHGFCVSILQEDSHAVQYPKNFLVLDNQDIDSMLKIIYEE 154


>gi|146313639|ref|YP_001178713.1| ATP-dependent DNA helicase Rep [Enterobacter sp. 638]
 gi|145320515|gb|ABP62662.1| ATP-dependent DNA helicase Rep [Enterobacter sp. 638]
          Length = 673

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGRIE----DDKLILQQLISTISNWKND 145


>gi|78484557|ref|YP_390482.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
 gi|78362843|gb|ABB40808.1| ATP-dependent DNA helicase Rep [Thiomicrospira crunogena XCL-2]
          Length = 677

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 40/209 (19%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           +      +          A V A AGSGKT ++ +++  L+  +   P  +  LT T  A
Sbjct: 1   MFGLNDRQLKGVMHIETPALVLAGAGSGKTRVITEKIAYLIRKHDVQPHHIYALTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++                                       +   GL V 
Sbjct: 61  AKEMKERVSKLLKD-------------------------------------DPSKGLNVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNEELKKAFY 193
           T H     I++Q        S F+I D   +K++++E   K  L+   LD  +     + 
Sbjct: 84  TFHNLGLNIIRQEYHALGYKSTFSIMDATDTKQILKELMKKQQLSEEELDGVQWDISNWK 143

Query: 194 EILEISNDEDIETLISDIISNRTALKLIF 222
               IS ++ +E    ++   R  L   +
Sbjct: 144 N-AHISPEKALEMAEDNLQQARAILYDYY 171


>gi|238759818|ref|ZP_04620975.1| ATP-dependent DNA helicase rep [Yersinia aldovae ATCC 35236]
 gi|238701961|gb|EEP94521.1| ATP-dependent DNA helicase rep [Yersinia aldovae ATCC 35236]
          Length = 673

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 43/204 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA
Sbjct: 1   MQLNPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQTLGR--------------------------KEAR-----------GLMIAT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + S+F++ D +    L+++     L     D+   L++   +I
Sbjct: 84  FHTLGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQI 139

Query: 196 LEISND-EDIETLISDIISNRTAL 218
               ND  D  +  + + S R  L
Sbjct: 140 SNWKNDLLDPASAAAQVRSERDKL 163


>gi|149189144|ref|ZP_01867432.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1]
 gi|148837107|gb|EDL54056.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1]
          Length = 1205

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 13/177 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGSDQSRHKQPLTVDQILVVTFTEAATAELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + ++     ++   I+    + +D   A   L+          V TIH FC+ ++
Sbjct: 82  RIHQ-ARIAFARGDSDDPVIKPLLNDITDHRFAVDTLLQAERQMDEAAVYTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            Q   E+   S F         +L  +       S       EL     ++    ND
Sbjct: 141 TQNAFESG--SRFNNEFITDESRLKAQVVADFWRSQFYPLGLELASEVRKLWATPND 195


>gi|291447590|ref|ZP_06586980.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350537|gb|EFE77441.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 1201

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 31/184 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +      P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 26  GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + + A      +++  +                           PG   + 
Sbjct: 86  AGELAERVRKALIAAGVTDPDVIDPD-------------------------NPPGEPTIS 120

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++ +  L   +     +  +    +L  +  +             L ++F  
Sbjct: 121 TYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLRE-----APGPYPALTRSFST 175

Query: 195 ILEI 198
           ++  
Sbjct: 176 LVSD 179


>gi|161505570|ref|YP_001572682.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866917|gb|ABX23540.1| hypothetical protein SARI_03740 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 674

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E  +  +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLID----DDKVVLQQLISTISNWKND 145


>gi|126176198|ref|YP_001052347.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS155]
 gi|217975060|ref|YP_002359811.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS223]
 gi|125999403|gb|ABN63478.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS155]
 gi|217500195|gb|ACK48388.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS223]
 gi|315269414|gb|ADT96267.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS678]
          Length = 670

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIGYLVEKCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L     D +++L KA    
Sbjct: 84  FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKALAST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|237737235|ref|ZP_04567716.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229421097|gb|EEO36144.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 518

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 83/241 (34%), Gaps = 52/241 (21%)

Query: 6   SFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           S       ID  S    EQ  A         V A AGSGKT  +V R   L+        
Sbjct: 53  SLLSKGYKIDYSSLLNEEQKKALLSTEGQYLVIAGAGSGKTRTIVYRTAWLIENGVSEEK 112

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T+ A+ EM  R+  I+             E+  +                    
Sbjct: 113 ILMVTFTRKASEEMKERLKNILNV----------EELKTV-------------------- 142

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA------ 178
                   V T H+FC  ++ ++     +  +  I +E + +K++ +  +          
Sbjct: 143 --------VTTFHSFCARLIFKYKALFEVD-NLNIMEEGEREKILLKIVERFELNKKYKG 193

Query: 179 -----SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKI 233
                  + +  E+L+ A   + +I   E I+ +I  I S     K I   + Y    +I
Sbjct: 194 KFYDIEELSNRLEKLQNARLRLEDIFPKEHIDDIIK-IKSEYRKYKKIKNVYEYDDLVEI 252

Query: 234 I 234
           +
Sbjct: 253 V 253


>gi|157144411|ref|YP_001451730.1| ATP-dependent DNA helicase Rep [Citrobacter koseri ATCC BAA-895]
 gi|157081616|gb|ABV11294.1| hypothetical protein CKO_00120 [Citrobacter koseri ATCC BAA-895]
          Length = 673

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D+     L++E     +     D+   L++    I    ND
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTDQVALLKELTDGLIE----DDKVILQQLISTISNWKND 145


>gi|17548006|ref|NP_521408.1| ATP-dependent DNA helicase REP protein [Ralstonia solanacearum
           GMI1000]
 gi|17430312|emb|CAD17077.1| probable atp-dependent dna helicase rep protein [Ralstonia
           solanacearum GMI1000]
          Length = 705

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++   
Sbjct: 21  DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +    + +  +                              L V T H+    I++    
Sbjct: 81  TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111

Query: 150 EANITSHFAIADEEQSKKLIEE 171
              +   F+I D +    LI+E
Sbjct: 112 HVGLKPRFSIMDSDDCFGLIQE 133


>gi|327484827|gb|AEA79234.1| Exodeoxyribonuclease V beta chain RecB [Vibrio cholerae LMA3894-4]
          Length = 1208

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F          L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESSLKAQVVADYWRRQFY 178


>gi|322834953|ref|YP_004214980.1| ATP-dependent DNA helicase Rep [Rahnella sp. Y9602]
 gi|321170154|gb|ADW75853.1| ATP-dependent DNA helicase Rep [Rahnella sp. Y9602]
          Length = 674

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR LL           + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEARGLL-----------IATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L++E  +  L     ++   L++    I   
Sbjct: 87  LGLEIIKREFAALGMKSNFSLFDDQDQLALLKELSEKWLE----NDKTLLQQLVSTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|296126522|ref|YP_003633774.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
 gi|296018338|gb|ADG71575.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
          Length = 659

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 39/164 (23%)

Query: 14  IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D++      Q            + + AGSGKT ++ +++  L+      P  ++ +T T
Sbjct: 1   MDILQNVSEVQREGILHRGSPLLLLSGAGSGKTLVITRKIAYLINELETPPENIIAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV  ++                                         P  L
Sbjct: 61  NKAAYEMKERVSALVPDIK-------------------------------------PSRL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            ++T H+ C  I+++        S+F I DE     +I+   K 
Sbjct: 84  FIRTFHSACLRILKENAHFLGYKSNFLILDEGDKLSVIKRIMKE 127


>gi|24375807|ref|NP_719850.1| ATP-dependent DNA helicase Rep [Shewanella oneidensis MR-1]
 gi|24350759|gb|AAN57294.1|AE015866_1 ATP-dependent DNA helicase Rep [Shewanella oneidensis MR-1]
          Length = 671

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+     +   +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L       +++L KA    
Sbjct: 84  FHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQKELQE-----DKDLLKALAGA 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|297538070|ref|YP_003673839.1| UvrD/REP helicase [Methylotenera sp. 301]
 gi|297257417|gb|ADI29262.1| UvrD/REP helicase [Methylotenera sp. 301]
          Length = 677

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 39/176 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           +++   + Q  A         V A AGSGKT ++ Q++  L+  A   P  +  +T T  
Sbjct: 1   MLNSLNAPQRDAVKYLDGPLLVLAGAGSGKTRVITQKISYLIDEAGYSPKEIAAITFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV +++                                       +   GL +
Sbjct: 61  AAREMQERVGKLMVG-------------------------------------KNIKGLTI 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            T H+    +++           F+I D   S K++ +   +T   ++     ++ 
Sbjct: 84  ATFHSLGLQMLRAEASLLGYKPQFSILDSSDSFKILADILATTDKQLLRKTQSQIS 139


>gi|330429421|gb|AEC20755.1| DNA helicase [Pusillimonas sp. T7-7]
          Length = 639

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 42/172 (24%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-T 64
           S    +  I+ ++  + +    +D   +  + A  GSGKT +L  R+ RLL+ +      
Sbjct: 4   SGNRLNNLIESLTPIQRQASAWND--GAFLLLAGPGSGKTRVLTARIARLLVESLDDRWR 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T  AA EM  R+++I+                                      
Sbjct: 62  ILALTFTNRAADEMRSRIIDIVP------------------------------------- 84

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKS 175
            E    L + T H+F   I++Q      I + F I        +L+E A   
Sbjct: 85  -EAEDRLFIGTFHSFAGEILRQNGTLLGIKTDFRIYSTTADRIELLERAMME 135


>gi|319897816|ref|YP_004136013.1| DNA helicase and single-stranded DNA-dependent atpase [Haemophilus
           influenzae F3031]
 gi|317433322|emb|CBY81698.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           influenzae F3031]
          Length = 671

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|317482570|ref|ZP_07941585.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915992|gb|EFV37399.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1343

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P      V A AGSGKT  + QR++ L+     P  +L LT T+ AA 
Sbjct: 5   TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +      S     ++   ++                           + T 
Sbjct: 65  ELLERVSAAVAGDMAGSTTDTVSDRAFLKPA-------------------------IFTY 99

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
            AF + I++Q+ L      +        + +L  E   S +     ++          +L
Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159

Query: 197 EISN 200
            +S+
Sbjct: 160 ALSD 163


>gi|313680462|ref|YP_004058201.1| uvrd/rep helicase [Oceanithermus profundus DSM 14977]
 gi|313153177|gb|ADR37028.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 917

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 13/164 (7%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            A+AG+GKT+ L  R    L  +  P  L  +T T++AAAE+  R+ E + A +    + 
Sbjct: 5   IASAGTGKTYALTSRFTAALAEH-PPYRLAAVTFTRSAAAELKARLRERLLAIAAGRFQP 63

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
             AE        P ++ + +A  L   +L    G  V TIH F   +++Q  L   +   
Sbjct: 64  SGAE------DVPPEAVVRRAGALATEVL----GATVTTIHGFFAELLRQNALALGLEPD 113

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           F   D  +S+++  E  ++ +   + + ++ L +    +    +
Sbjct: 114 FLRIDASESQQIFAEEARAYV--YLNEEDDALAEVLGRLFAKRS 155


>gi|145631680|ref|ZP_01787443.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021]
 gi|144982703|gb|EDJ90239.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021]
          Length = 671

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|269966191|ref|ZP_06180280.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B]
 gi|269829106|gb|EEZ83351.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B]
          Length = 1227

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 37  LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S++   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 97  RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 156 TQNAFESG 163


>gi|229528683|ref|ZP_04418073.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)]
 gi|229332457|gb|EEN97943.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)]
          Length = 1208

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F          L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESSLKAQVVADYWRRQFY 178


>gi|218708138|ref|YP_002415759.1| ATP-dependent DNA helicase rep [Vibrio splendidus LGP32]
 gi|218321157|emb|CAV17107.1| ATP-dependent DNA helicase rep [Vibrio splendidus LGP32]
          Length = 672

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKGESK-------------------------------------GLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    +D +++L +A    
Sbjct: 84  FHTMGLTIIRREYKALGLKAGFSLFDDQDQLALLKE-----LTERQIDGDKDLLRALMST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|239616541|ref|YP_002939863.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1]
 gi|239505372|gb|ACR78859.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1]
          Length = 652

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 38/167 (22%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S    +     +      + A  GSGKT ++  ++  L+ +  +P  +L +T T+AA+ E
Sbjct: 18  SLDNEQLNAVLNSKGRTLIVAGPGSGKTRVITFKIAYLVSSGVNPQNILLVTFTRAASRE 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R                         ++ + SD+               G+   T H
Sbjct: 78  MIER------------------------ARRVSGSDLR--------------GMLAGTFH 99

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
             C   ++++     I+S F I D E SK LI+  K   +     D 
Sbjct: 100 HVCNHFLRKYATHLGISSDFTILDREDSKDLIKHCKAQLMEQRGNDG 146


>gi|16272592|ref|NP_438809.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20]
 gi|1172905|sp|P44804|REP_HAEIN RecName: Full=ATP-dependent DNA helicase rep
 gi|1573648|gb|AAC22309.1| ATP-dependent DNA helicase (rep) [Haemophilus influenzae Rd KW20]
          Length = 670

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|193217029|ref|YP_002000271.1| ATP-dependent DNA helicase [Mycoplasma arthritidis 158L3-1]
 gi|193002352|gb|ACF07567.1| ATP-dependent DNA helicase [Mycoplasma arthritidis 158L3-1]
          Length = 726

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 39/163 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D  S  + ++        +  + A AGSGKT +L  ++  L+   N  P  +L LT +  
Sbjct: 5   DFDSLNEQQKSAVIFTDGALRIIAGAGSGKTRVLTYKIAYLIENRNVSPGDILALTFSNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R    +   +                                          V
Sbjct: 65  AANEMRDRAYGALEKTNEYP--------------------------------------TV 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C  I++      +  + F I DE   K++++      
Sbjct: 87  STFHSLCARILRSEIHNFDYPNDFQILDESDQKQVLKIVYTEL 129


>gi|238021168|ref|ZP_04601594.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC 51147]
 gi|237868148|gb|EEP69154.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC 51147]
          Length = 666

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 38/158 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q        + +V A AGSGKT ++ +++  ++      P  +  +T T  AA
Sbjct: 1   MKLNPEQQAAVEYLGGALFVLAGAGSGKTRVITEKIAYMITQAGYKPHHIAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   +                                       E   GL V T
Sbjct: 61  KEMQERVSARLGR-------------------------------------EQTRGLTVCT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            H+    I+++         +F+I D   S ++I E  
Sbjct: 84  FHSLGMRILREEAQHVGYKKNFSILDASDSARIIGELL 121


>gi|91223408|ref|ZP_01258673.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus
           12G01]
 gi|91191494|gb|EAS77758.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus
           12G01]
          Length = 1227

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 37  LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S++   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 97  RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 156 TQNAFESG 163


>gi|33600795|ref|NP_888355.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33568395|emb|CAE32307.1| probable ATP-dependent DNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 697

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 35/168 (20%)

Query: 15  DLISQTKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           D +++    Q  A+        +++  V A AGSGKT+ L  RV  L+L  A P  +L L
Sbjct: 14  DPLAELNPAQREAAAYGVDAPASQALLVIAGAGSGKTNTLAHRVAHLILHGADPQRMLLL 73

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AA EM  RV  ++                                  L      P
Sbjct: 74  TFSRRAAQEMERRVGGVLQRVMG-----------------------------LRAGHAAP 104

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 T H+    +++       ++  F + D   ++ L+   +   
Sbjct: 105 ALPWAGTFHSVGARLLRDCAPRIGLSEAFTVHDRGDAEDLMGIVRHEL 152


>gi|117918831|ref|YP_868023.1| ATP-dependent DNA helicase Rep [Shewanella sp. ANA-3]
 gi|117611163|gb|ABK46617.1| ATP-dependent DNA helicase Rep [Shewanella sp. ANA-3]
          Length = 671

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+     +   +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L       +++L KA    
Sbjct: 84  FHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQKELQE-----DKDLLKALAGA 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|284800229|ref|ZP_06390624.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava
           NJ9703]
 gi|284795654|gb|EFC51001.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava
           NJ9703]
          Length = 561

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 37/203 (18%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92
            + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R+   +     + 
Sbjct: 19  LIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVL 78

Query: 93  ---------------------------SDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
                                       D+ L+  I    G++  +    +    L   L
Sbjct: 79  NEIQTLGGEPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAAL 138

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--------EEAKKSTL 177
                  + TIH FC+ +++ +           ++D+ + + LI        + A  +TL
Sbjct: 139 SQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTL 198

Query: 178 ASIMLDNNEELKKAFYEILEISN 200
           A ++ D     ++   EI   + 
Sbjct: 199 AQLVFDRKCTPEEMLAEIKSYTG 221


>gi|188532349|ref|YP_001906146.1| ATP-dependent DNA helicase Rep [Erwinia tasmaniensis Et1/99]
 gi|188027391|emb|CAO95238.1| ATP-dependent DNA helicase Rep [Erwinia tasmaniensis Et1/99]
          Length = 672

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++  +   + S+F++ D++    L+++  +  L     ++   L++    I    ND
Sbjct: 90  EIIKREYVALGMKSNFSLFDDQDQLALLKDLTERWLE----NDKNLLQQLISTISNWKND 145

Query: 202 E-DIETLISDIISNRTAL 218
             D     +  +S R  L
Sbjct: 146 LMDPPRAAAGALSERDKL 163


>gi|45657598|ref|YP_001684.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600837|gb|AAS70321.1| atp-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 672

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 40/156 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + ++  + E +L  D      V A AG+GKT  +V R+ +L+ +    S++L LT ++ A
Sbjct: 12  EELNPAQMEAVLTLD--GPVLVLAGAGTGKTKTIVSRLAQLVASGIPASSILLLTFSRKA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R           +  I + + +++QG                            
Sbjct: 70  AREMILR-----------ASMIGNKKCSEVQG---------------------------G 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H+FC  ++++F    +I+S F I DE     + +
Sbjct: 92  TFHSFCNGVLRKFAPVLDISSGFTILDESDCLDVFQ 127


>gi|332142120|ref|YP_004427858.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552142|gb|AEA98860.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1336

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 76/201 (37%), Gaps = 15/201 (7%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76
           +  +   ++A        + A+AG+GKT  + +  LRLLL        +L +T TKAA  
Sbjct: 26  NDAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLYLRLLLEKKLTVKEILVMTFTKAATE 85

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGG 130
           E+  R+ + +     +  +    +        P    +       ++  LL         
Sbjct: 86  EIKGRIAKTLREAFLIWQQAKENDNQIDSNCDPVYQHLFTRCNTDESMALLKAAQLELDE 145

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             V TIHAFC+ ++ Q    +       + +   +  L  +A +  +  +  + ++    
Sbjct: 146 ASVFTIHAFCQHVITQLAFNSGFAMSLNLGN--DTSDLYLQAAEDYIRKVSKNEDD---- 199

Query: 191 AFYEILEISNDEDIETLISDI 211
             + +L  S     E L+ + 
Sbjct: 200 --FRLLAESGWHTPERLLLEF 218


>gi|148981244|ref|ZP_01816335.1| ATP-dependent DNA helicase Rep [Vibrionales bacterium SWAT-3]
 gi|145960940|gb|EDK26267.1| ATP-dependent DNA helicase Rep [Vibrionales bacterium SWAT-3]
          Length = 672

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKGEAK-------------------------------------GLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    +D +++L +A    
Sbjct: 84  FHTMGLTIIRREYKALGLKAGFSLFDDQDQLALLKE-----LTERQIDGDKDLLRALMSA 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|145633860|ref|ZP_01789582.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
 gi|144985302|gb|EDJ92141.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
          Length = 670

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|238789353|ref|ZP_04633139.1| ATP-dependent DNA helicase rep [Yersinia frederiksenii ATCC 33641]
 gi|238722496|gb|EEQ14150.1| ATP-dependent DNA helicase rep [Yersinia frederiksenii ATCC 33641]
          Length = 672

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA
Sbjct: 1   MQLNPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQTLGR--------------------------KEAR-----------GLMIAT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + S+F++ D +    L+++     L     D+   L++   +I
Sbjct: 84  FHTLGLEIIKKEYAALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|294637927|ref|ZP_06716196.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685]
 gi|291088953|gb|EFE21514.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685]
          Length = 700

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 42/180 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+    +P   +  +T T  AA EM  R
Sbjct: 34  QQQAVEYVTGPCLVLAGAGSGKTRVITNKIAHLIRVCGYPARQIAAVTFTNKAAREMKER 93

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 94  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 116

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      +  +F++ D++    L+ +  +  L      +  +L++    I    ND
Sbjct: 117 EIIKREYKALAMKPNFSLFDDQDQLALLTDLTERWLEK----DKTQLQQLIATISNWKND 172


>gi|68249227|ref|YP_248339.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP]
 gi|68057426|gb|AAX87679.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 86-028NP]
          Length = 670

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|323359568|ref|YP_004225964.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323275939|dbj|BAJ76084.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 1095

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 27/230 (11%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S    +  +     T  +  +   P   A V A AGSGKT  +  RV+ L+         
Sbjct: 6   SAATIAAALGQFPPTPEQTAVIESPLAPALVVAGAGSGKTETMAGRVVWLVANGIVRRDE 65

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG----------KKPNKSDM 114
           +L LT T+ AA E++ R+   +   S      L   + ++                 +  
Sbjct: 66  VLGLTFTRKAAGELAERIQRRLQRLSEFETRGLLPLLPELHASGRLGVFAELAAQQGARG 125

Query: 115 SKARHLLITIL---------------ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159
             AR  ++  L               +      V T ++F ++++++  L     +  AI
Sbjct: 126 DAARRAVLDALADEYATLGTGESDGDQLLHRPTVSTYNSFADSLVREHGLRIGRDAESAI 185

Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
             E  +  L+     ++    + +  E  +      L I+ D  ++ L+ 
Sbjct: 186 LSESAAWLLMRRVVFASDDPRLEERQESPRTLIDAALRIARD-GVDNLVD 234


>gi|28899148|ref|NP_798753.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260364728|ref|ZP_05777315.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           K5030]
 gi|260876768|ref|ZP_05889123.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260898155|ref|ZP_05906651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28807372|dbj|BAC60637.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308089095|gb|EFO38790.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091467|gb|EFO41162.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308115342|gb|EFO52882.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           K5030]
          Length = 1227

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 37  LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S++   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 97  RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 156 TQNAFESG 163


>gi|113968720|ref|YP_732513.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-4]
 gi|113883404|gb|ABI37456.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-4]
          Length = 671

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+     +   +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L       +++L KA    
Sbjct: 84  FHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQKELQE-----DKDLLKALAGA 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|114049137|ref|YP_739687.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-7]
 gi|113890579|gb|ABI44630.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-7]
          Length = 671

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+     +   +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ +  L++E  +  L       +++L KA    
Sbjct: 84  FHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQKELQE-----DKDLLKALAGA 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|260773436|ref|ZP_05882352.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14]
 gi|260612575|gb|EEX37778.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14]
          Length = 1204

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL + +             +L +T T+AA AE+  R+ +
Sbjct: 24  LIEASAGTGKTFTIAALYLRLLLGHGNADTRHPTPLTVDQILVVTFTEAATAELRDRIRQ 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + ++    S++   IQG   + +D      +L+          V TIH FC+ ++
Sbjct: 84  RIHQ-ARIAFLRGSSDDPVIQGLLADYADRPGVAKVLLQAERQMDEAAVYTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F+        +L  +           
Sbjct: 143 TQNAFESG--SRFSNEFVTDESQLKAQVVADYWRRQFY 178


>gi|238750650|ref|ZP_04612149.1| ATP-dependent DNA helicase rep [Yersinia rohdei ATCC 43380]
 gi|238711040|gb|EEQ03259.1| ATP-dependent DNA helicase rep [Yersinia rohdei ATCC 43380]
          Length = 673

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D +    L+++     L     D+   L++   +I   
Sbjct: 87  LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|148656349|ref|YP_001276554.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148568459|gb|ABQ90604.1| ATP-dependent DNA helicase, Rep family [Roseiflexus sp. RS-1]
          Length = 659

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 41/163 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
             S    ++   + P     V A AGSGKT +L  R+  L++     PS +L LT T  A
Sbjct: 9   FASLNPEQRTAVAAPPGPILVRAGAGSGKTRVLTLRIAYLIVEHGVSPSNILALTFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ ++                                         +  GL   
Sbjct: 69  AREMRQRLRDMPGV--------------------------------------SIRGLTAG 90

Query: 135 TIHAFCEAIMQQF-PLEAN-ITSHFAIADEEQSKKLIEEAKKS 175
           T H+ C +++++         T+ F I  E++   L   A  +
Sbjct: 91  TFHSVCASVLREHIAGRIGSYTADFTIYAEDEQVHLASAALDA 133


>gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
 gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
          Length = 874

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           ++      +++    D T +  + A AG+GKT+ L  R+  +L    A P  +LCLT T 
Sbjct: 13  MEFAELNPAQREAVEDLTDNILLLAPAGTGKTNTLAYRIANILAEGRAEPEEILCLTFTN 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A  EM  R++                                  R +L           
Sbjct: 73  KACREMKERIVLRAGEGG---------------------------RRVL----------- 94

Query: 133 VQTIHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEAKKS 175
           V+T H FC  +++      +++ + F I DE     +I +    
Sbjct: 95  VRTFHGFCYDVIKTEAKRHSDLFADFTIFDEADCLSIIRDLLSE 138


>gi|50123135|ref|YP_052302.1| ATP-dependent DNA helicase Rep [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613661|emb|CAG77112.1| ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 673

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 43/208 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKETR-------------------------------------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D++    L++E     L    L+N++ L +     +  
Sbjct: 87  LGLEIIKREYVALGMKSNFSLFDDQDQMALLKE-----LTEQWLENDKVLLQQLISTISN 141

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFS 226
             ++ I+   +   +     KL    +S
Sbjct: 142 WKNDLIDPAGAAATARSERDKLFVHCYS 169


>gi|227325835|ref|ZP_03829859.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 673

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 43/208 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQAKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKETR-------------------------------------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D++    L++E     L    L+N++ L +     +  
Sbjct: 87  LGLEIIKREYVALGMKSNFSLFDDQDQMALLKE-----LTEQWLENDKVLLQQLISTISN 141

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFS 226
             ++ I+   +   +     KL    +S
Sbjct: 142 WKNDLIDPAGAAATARSERDKLFVHCYS 169


>gi|309973857|gb|ADO97058.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2846]
          Length = 673

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|238765155|ref|ZP_04626088.1| ATP-dependent DNA helicase rep [Yersinia kristensenii ATCC 33638]
 gi|238696645|gb|EEP89429.1| ATP-dependent DNA helicase rep [Yersinia kristensenii ATCC 33638]
          Length = 674

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D +    L+++     L     D+   L++   +I   
Sbjct: 87  LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|330859831|emb|CBX70163.1| hypothetical protein YEW_DC12990 [Yersinia enterocolitica W22703]
          Length = 311

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 38/161 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               I+++      + S+F++ D +    L+++     L  
Sbjct: 87  LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLED 127


>gi|297182254|gb|ADI18424.1| superfamily I DNA and RNA helicases [uncultured delta
           proteobacterium HF4000_08N17]
          Length = 674

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 40/164 (24%)

Query: 14  IDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           ++ +S   S+Q  A   T+    + A AGSGKT +++QR+  L+      P  +L +T T
Sbjct: 1   MNSLSLLNSQQKEAVTTTQGPVLILAGAGSGKTQVIIQRIAYLIRKKQVPPQQILAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ E ++                                          G+
Sbjct: 61  NKAAEEMRERLKETLSGKQ--------------------------------------NGV 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            + T HA    ++++         +F I D+     +I+   + 
Sbjct: 83  HLSTFHALGVNMLRKSIHHLGYRPNFIIYDKNDQLSVIKTIMED 126


>gi|226940129|ref|YP_002795202.1| RecB [Laribacter hongkongensis HLHK9]
 gi|226715055|gb|ACO74193.1| RecB [Laribacter hongkongensis HLHK9]
          Length = 1216

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 23/176 (13%)

Query: 27  ASDPTRS-----AWVSANAGSGKTHILVQRVLRLLLA-------------NAHPSTLLCL 68
           A DP R        + A+AG+GKT  +    LRL+L                 P  +L +
Sbjct: 7   ALDPRRFPLHGLRLIEASAGTGKTFTIAALYLRLVLGARSEDDGLAFNAGGLLPPQILVV 66

Query: 69  THTKAAAAEMSHRVLEIITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           T T+AA  E+  R+   +   +     ++   A +  +    P       A H L    +
Sbjct: 67  TFTEAATEELRERIRSRLVEAARAFRQNDSDDAFLRGLLDDYPAGQRGRHA-HQLELAAQ 125

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                 + TIHA+C+ +++    ++   S F +        L E+A          
Sbjct: 126 WMDEAAIFTIHAYCQKMLRTHAFDSG--SLFELTVNTDESALREQAVNDYWRRHFY 179


>gi|24214893|ref|NP_712374.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|24195918|gb|AAN49392.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
          Length = 672

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 40/156 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + ++  + E +L  D      V A AG+GKT  +V R+ +L+ +    S++L LT ++ A
Sbjct: 12  EELNPAQMEAVLTLD--GPVLVLAGAGTGKTKTIVSRLAQLVASGIPASSILLLTFSRKA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R           +  I + + +++QG                            
Sbjct: 70  AREMILR-----------ASMIGNKKCSEVQG---------------------------G 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H+FC  ++++F    +I+S F I DE     + +
Sbjct: 92  TFHSFCNGVLRKFAPVLDISSGFTILDESDCLDVFQ 127


>gi|329122565|ref|ZP_08251146.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116]
 gi|327473116|gb|EGF18542.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116]
          Length = 670

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|262393458|ref|YP_003285312.1| exodeoxyribonuclease V subunit beta [Vibrio sp. Ex25]
 gi|262337052|gb|ACY50847.1| exodeoxyribonuclease V beta chain [Vibrio sp. Ex25]
          Length = 1224

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 34  LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 93

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S++   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 94  RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 152

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 153 TQNAFESG 160


>gi|170079561|ref|YP_001736194.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002]
 gi|169887230|gb|ACB00939.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002]
          Length = 1075

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 36/202 (17%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
               +Q  A     S  ++A AG+GKTH+L  R L  L      P  ++ +T T+ AA E
Sbjct: 2   PLTKQQEKAVTSKTSVSITAGAGTGKTHMLAARYLHHLENDGLSPLQVVAMTFTEKAATE 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++I                    + P+K D           L      ++ T H
Sbjct: 62  LRARIRQVIAQ------------------EHPDKFDW----------LAEVEAAQISTFH 93

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A    I Q+ P  A + ++F   DE +      E     LA +  +   E+  +  +   
Sbjct: 94  AVAMRICQEHPEAAGVPANFQPLDEWEGSIWQAEQLNVALAEMPPELYGEIPYSTLKTA- 152

Query: 198 ISNDEDIETLISDIISNRTALK 219
                 I  L+ D +S R AL+
Sbjct: 153 ------IAALLGDPLSAREALE 168


>gi|15839269|ref|NP_299957.1| ATP-dependent DNA helicase [Xylella fastidiosa 9a5c]
 gi|9107919|gb|AAF85477.1|AE004074_1 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c]
          Length = 680

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 39/191 (20%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Y + +  + E + L+    S Q  A         V A AGSGKTH++V+++  L+ ++ +
Sbjct: 9   YTDRYNTYPENVSLMHGLNSPQRAAVLYREGPLLVLAGAGSGKTHVIVEKIAYLITSDCY 68

Query: 62  P-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           P   +  +T T  +A EM  RV + I +                                
Sbjct: 69  PAKRIAAITFTNKSAKEMRERVAKQIKS-------------------------------- 96

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                    GL + T HA     +Q       +   F++ D + +   I +        +
Sbjct: 97  -----SRADGLTICTFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHGAKQDV 151

Query: 181 MLDNNEELKKA 191
           + D    + +A
Sbjct: 152 IDDTKRRISRA 162


>gi|254229524|ref|ZP_04922938.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25]
 gi|151937989|gb|EDN56833.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25]
          Length = 1227

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 37  LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S++   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 97  RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 156 TQNAFESG 163


>gi|147674146|ref|YP_001217828.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|262168313|ref|ZP_06036010.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27]
 gi|146316029|gb|ABQ20568.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|227014216|gb|ACP10426.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|262023205|gb|EEY41909.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27]
          Length = 1208

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ +    LRL+L        +AHP     +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +   + L+    +++   ++      +D + A  LL++         + TIH FC+ ++
Sbjct: 84  RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            Q   E+   S F          L  +           
Sbjct: 143 TQNAFESG--SRFENEFVTDESSLKAQVVADYWRRQFY 178


>gi|269122166|ref|YP_003310343.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
 gi|268616044|gb|ACZ10412.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
          Length = 995

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 16/193 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L    ++ L+       +  +T TK A +E+  RVL  +   S  ++
Sbjct: 4   IIKASAGTGKTYSLALEYIKELILGTDFRKIYVMTFTKKATSEIRERVLLFLEEISEGTE 63

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF----CEAIM--QQFP 148
                     +       +  K + +   I+     +K+ TI +F     + I+  ++  
Sbjct: 64  AGDEILENIRKSDPGLTVNQEKMKIIYKDIIYNKDKIKIYTIDSFIKIIFDRIVAEKKHI 123

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
              N        D +++K++IE      +++     + E  K+F       N E+ E LI
Sbjct: 124 YTYN-------TDNDENKEVIENVLAELISNRY---HMEKVKSFLLKERRRNLEEYEELI 173

Query: 209 SDIISNRTALKLI 221
             +I NR   + I
Sbjct: 174 DQLIKNRWKFEFI 186


>gi|301169366|emb|CBW28966.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           influenzae 10810]
          Length = 670

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|148654248|ref|YP_001274453.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148566358|gb|ABQ88503.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
          Length = 1177

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 35/185 (18%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
             EQ  A D      ++A  G+GKT  +V + + L+     P+++L LT +  AA EM  
Sbjct: 200 DPEQQAAVDAPLPLLLAAGPGTGKTRSIVAKYVSLVHQGVDPASILALTFSNRAAEEMRE 259

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R++  +   +                                      G +++ T H++ 
Sbjct: 260 RIIAALRQAAP----------------------------------RLAGRVEISTFHSWG 285

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             I++ +     + +   + D      L+ +     L      +  E  +    I++  +
Sbjct: 286 LNILRIYGARLGLPADVRLLDTADLFLLLSKRLDD-LRLAYFKDLREPTRHLVTIIQAIS 344

Query: 201 DEDIE 205
               E
Sbjct: 345 RIKDE 349


>gi|330881403|gb|EGH15552.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 418

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T AA  E+  
Sbjct: 15  RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74

Query: 81  RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+   +   +    + ++A   +     ++            L    +      V TIH+
Sbjct: 75  RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +C+ ++++   ++   S F    E     L+ E  +     
Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173


>gi|307328515|ref|ZP_07607689.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885783|gb|EFN16795.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 1232

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 30/190 (15%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           +E  E +  I  T  +    +       + A AGSGKT ++  RV+ L+      P  +L
Sbjct: 19  EELKELL-GIPFTPEQVACITARPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPDRVL 77

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T  AA E++ RV   +     +  +       +  G+                   
Sbjct: 78  GLTFTNKAAGELAERVRRALVTAGIVDQDPDPGATEEAAGEPV----------------- 120

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 + T HAF   +++   L   +     +  +    +L     +S           
Sbjct: 121 ------ISTYHAFAGQLLKDHGLRVGLEPSARLLADATRFQLAARVLRS-----APGPYP 169

Query: 187 ELKKAFYEIL 196
            L + F +++
Sbjct: 170 ALTRPFSDLV 179


>gi|239944122|ref|ZP_04696059.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239990574|ref|ZP_04711238.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 1191

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 31/184 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +      P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 16  GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + + A      +++  +                           PG   + 
Sbjct: 76  AGELAERVRKALIAAGVTDPDVIDPD-------------------------NPPGEPTIS 110

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++ +  L   +     +  +    +L  +  +             L ++F  
Sbjct: 111 TYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLRE-----APGPYPALTRSFST 165

Query: 195 ILEI 198
           ++  
Sbjct: 166 LVSD 169


>gi|165975735|ref|YP_001651328.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165875836|gb|ABY68884.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 672

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 73/220 (33%), Gaps = 48/220 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L        L  ++ +N  E K     +
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135

Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKI 233
           +   ++   + L  +++    R   + +F  F  L++ ++
Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYQLYQNQL 175


>gi|332139482|ref|YP_004425220.1| ATP-dependent DNA helicase Rep [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549504|gb|AEA96222.1| ATP-dependent DNA helicase Rep [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 671

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 38/163 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75
           +   ++++   +  +    V A AGSGKT ++  ++  L+     P+  +  +T T  AA
Sbjct: 1   MKLNEAQESAVTYVSGPCLVLAGAGSGKTRVITNKIAHLVRNCDMPARYIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GLKV T
Sbjct: 61  REMKERVAQTLGK--------------------------PEAR-----------GLKVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            H     I++    +  +   F++ D++ S  L+ +    TL 
Sbjct: 84  FHTMGLTIIKAHVKDLGLKPGFSLFDDKDSFALLNDLTSDTLD 126


>gi|190149550|ref|YP_001968075.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307245094|ref|ZP_07527187.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307262870|ref|ZP_07544494.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914681|gb|ACE60933.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306853983|gb|EFM86195.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306871775|gb|EFN03495.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 672

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L        L  ++ +N  E K     +
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135

Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +   ++   + L  +++    R   + +F  F  L++ ++   +    
Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYRLYQNQLKAYNALDF 183


>gi|269103841|ref|ZP_06156538.1| ATP-dependent DNA helicase Rep [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163739|gb|EEZ42235.1| ATP-dependent DNA helicase Rep [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 672

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+   +     +  LT T  AA
Sbjct: 1   MKLNPRQNEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQHCDYKARNIAALTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKQESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + ++F++ D++    L++E  +  L      + + LK+    I
Sbjct: 84  FHTLGLNIIRREYKALGLKANFSLFDDQDQMALLKELTEDELE----GDKDLLKQLLSSI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|209521655|ref|ZP_03270348.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160]
 gi|209497914|gb|EDZ98076.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160]
          Length = 1239

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 9/151 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   +       +
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 +     + +      N  +   A  ++   L T     + TIHAFC+  +Q+ P
Sbjct: 88  MDDDGGDPFIRRLFETTLAPQNGIEREAALKVVRRALRTFDQAAIHTIHAFCQRALQEAP 147

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
             A +   F +  E     L  E        
Sbjct: 148 FAAAMPFVFEM--EADDASLRFELAADFWRE 176


>gi|89094047|ref|ZP_01166991.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92]
 gi|89081721|gb|EAR60949.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92]
          Length = 1179

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 85/186 (45%), Gaps = 18/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-------PSTLLCLTHTKAAAAEMSHRVLEII- 86
            + A+AG+GKT+ +    LRLLL           P  +L +T T+AA  E+  R+ + I 
Sbjct: 19  LIEASAGTGKTYTITALYLRLLLGLGQVGDKPLGPDQILVVTFTEAATEELRDRIRQRIV 78

Query: 87  -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
               S L+D++    +  ++ +    +D+++A  LL   +       + TIH FC+ +++
Sbjct: 79  DARNSFLTDQVSDPFLAALKAQV---NDIAQAVKLLDQAIRQMDEAAIFTIHGFCQRMLK 135

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           +   E+       +  ++QS        +S +     +N   ++ A  +++     +  E
Sbjct: 136 RHAFESGSLFDTELTQDDQS------LVRSAVLDYWRNNIYPMQGAVADLVFNHCWQSPE 189

Query: 206 TLISDI 211
            LI D+
Sbjct: 190 QLIMDL 195


>gi|301167220|emb|CBW26800.1| Rep helicase, a single-stranded DNA-dependent ATPase [Bacteriovorax
           marinus SJ]
          Length = 683

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 38/174 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71
            I L     +++  A        + A AGSGKT  +  R+  ++   A P  ++L ++ T
Sbjct: 1   MISLSGLNAAQRQAAETIDGPLLILAGAGSGKTRTITYRIAHMVDNLALPQKSILAVSFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R++ ++                             KAR           GL
Sbjct: 61  NKAAKEMRERIIGLLGK--------------------------KKAR-----------GL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + T H+    I+++   +     +F+I D      ++ EA KS  A    D  
Sbjct: 84  TMATFHSLGVKILKKEISKLGYHKNFSIYDSADQSAIMREALKSFKAGKQFDQK 137


>gi|148827827|ref|YP_001292580.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG]
 gi|148719069|gb|ABR00197.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG]
          Length = 670

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|114799490|ref|YP_761244.1| UvrD/REP helicase domain-containing protein [Hyphomonas neptunium
           ATCC 15444]
 gi|114739664|gb|ABI77789.1| UvrD/REP helicase domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 1137

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 38/152 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++  A    ++  + A  G+GKT  LV R+  L      P ++L LT +  AA EM+
Sbjct: 198 NEEQKRAAGHDGKAVLLKAGPGTGKTQTLVGRLSVLKNRGVDPESILLLTFSNKAAGEMT 257

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R +    A +  +                                       + T H+F
Sbjct: 258 DRAIAAWPAAAGSA--------------------------------------WIGTFHSF 279

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
              ++++F   A +     + D  ++  L+E+
Sbjct: 280 GLDLLRRFHDRAGLPPDPRLIDATEAIALLED 311


>gi|322831718|ref|YP_004211745.1| exodeoxyribonuclease V, subunit beta [Rahnella sp. Y9602]
 gi|321166919|gb|ADW72618.1| exodeoxyribonuclease V, beta subunit [Rahnella sp. Y9602]
          Length = 1227

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 30/204 (14%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHR 81
           T S  + A+AG+GKT  +    +RL+L +           P  +L +T T AA  E+  R
Sbjct: 18  TGSRLIEASAGTGKTFTIAALYVRLVLGHGGDNAFSRPLTPPEILVVTFTDAATKELRDR 77

Query: 82  VLEIITAWS-----HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +   ++  +     +   E  S E  +    +            L    E      V TI
Sbjct: 78  IRARLSQAAGYFLGNPDAENDSDEFLQNLRAEYTPEQWPGCARKLQLAAEWMDESAVSTI 137

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD------------- 183
           H +C  ++ +   ++   S F    E    +L+    +    S                 
Sbjct: 138 HGWCNRMLGEHAFDS--DSLFTQTLETDQTELLMNVVRDYWRSFYFPLGEQEIRMLRGWW 195

Query: 184 -NNEELKKAFYEILEISNDEDIET 206
            + E+L ++   +LE + +   + 
Sbjct: 196 RSPEDLHRSVMPLLEYAGELGSDQ 219


>gi|307249494|ref|ZP_07531482.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858487|gb|EFM90555.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 672

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L        L  ++ +N  E K     +
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135

Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +   ++   + L  +++    R   + +F  F  L++ ++   +    
Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYRLYQNQLKAYNALDF 183


>gi|303249563|ref|ZP_07335770.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307251810|ref|ZP_07533712.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651637|gb|EFL81786.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306860717|gb|EFM92728.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 672

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L        L  ++ +N  E K     +
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135

Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +   ++   + L  +++    R   + +F  F  L++ ++   +    
Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYRLYQNQLKAYNALDF 183


>gi|304398128|ref|ZP_07380003.1| ATP-dependent DNA helicase Rep [Pantoea sp. aB]
 gi|304354414|gb|EFM18786.1| ATP-dependent DNA helicase Rep [Pantoea sp. aB]
          Length = 673

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM
Sbjct: 4   NPSQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR LL           + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEARGLL-----------ISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L++E  K  L     ++   L++    I   
Sbjct: 87  LGLEIIKRETAALGMKSNFSLFDDQDQLALLKELTKEWLE----EDKTLLQQLISTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|229845640|ref|ZP_04465765.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
 gi|229811440|gb|EEP47144.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
          Length = 670

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|24379604|ref|NP_721559.1| ATP-dependent DNA helicase [Streptococcus mutans UA159]
 gi|24377553|gb|AAN58865.1|AE014954_4 ATP-dependent DNA helicase [Streptococcus mutans UA159]
          Length = 733

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 44/171 (25%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT +L  R+  L+     +P  +L +T T  AA EM  R      A +  + E 
Sbjct: 2   AGAGSGKTRVLTHRIAYLIDEKFINPWNILAITFTNKAAREMKERAF----ALNAATQET 57

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           L                                   + T H+ C  I+++         +
Sbjct: 58  L-----------------------------------IATFHSMCVRILRRDADHIGYNRN 82

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           F I D  + + L++   K+      +D+ +  ++A    +  + ++ ++ +
Sbjct: 83  FTIVDPGEQRTLMKRIFKNF----NIDSKKWNERAVLAAISNAKNDLLDEI 129


>gi|309751752|gb|ADO81736.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2866]
          Length = 671

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFVLLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|269302561|gb|ACZ32661.1| ATP-dependent DNA helicase pcrA [Chlamydophila pneumoniae LPCoLN]
          Length = 639

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 37/160 (23%)

Query: 17  ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           IS+    Q  A + P     V A AG+GKT ++  R+L L+     P  +L +T T  AA
Sbjct: 4   ISELNEAQRKAVTAPLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R++    + +     +                                    V T
Sbjct: 64  RELKERIVNQCASTNEFDVPM------------------------------------VCT 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            H+    I+++     N  ++F I D+  ++KLI+ A + 
Sbjct: 88  FHSLGVFILRRSINLLNRENNFTIYDQSDAEKLIKYALQQ 127


>gi|68465639|ref|XP_723181.1| potential DNA repair helicase [Candida albicans SC5314]
 gi|68465932|ref|XP_723034.1| potential DNA repair helicase [Candida albicans SC5314]
 gi|46445047|gb|EAL04318.1| potential DNA repair helicase [Candida albicans SC5314]
 gi|46445203|gb|EAL04473.1| potential DNA repair helicase [Candida albicans SC5314]
          Length = 862

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 85/215 (39%), Gaps = 38/215 (17%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANA 60
           +   S Q   + ++ ++  + + + A    R   + A  G+GKT +L+ RV  LL+  N 
Sbjct: 1   MMSTSNQVLDKILESLNANQRKAVTAPCNGR-LQIIAGPGTGKTKVLISRVAYLLISENI 59

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  ++  T TK AA EM  R+ +++       D+++                       
Sbjct: 60  RPDNMIVTTFTKRAANEMIERLTKLVEGTDINIDKLI----------------------- 96

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                       + T H+ C  I++++    ++  ++ IADE     +++    +  A  
Sbjct: 97  ------------IGTFHSICFRIIKKYGKLIDLE-NYTIADERDKSYILKTMLTNLSAKD 143

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
           +   +   +++  ++     +E    L   +IS +
Sbjct: 144 IERLDSFGEESLQKLRSHKANEKYHGLDLSVISKK 178


>gi|307254049|ref|ZP_07535896.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258505|ref|ZP_07540242.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862974|gb|EFM94921.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867409|gb|EFM99260.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 672

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L        L  ++ +N  E K     +
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135

Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +   ++   + L  +++    R   + +F  F  L++ ++   +    
Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYRLYQNQLKAYNALDF 183


>gi|298368953|ref|ZP_06980271.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282956|gb|EFI24443.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 688

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 38/174 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q           V A AGSGKT ++ Q++  L++     P T+  +T T  AA
Sbjct: 19  MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 78

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                           GL + T
Sbjct: 79  TEMQERVAKMLPK-------------------------------------SQTRGLTICT 101

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            H+    I+++         +F+I D   S K+I E   ST    +     ++ 
Sbjct: 102 FHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGSTGKEALFKAQHQIS 155


>gi|28896815|ref|NP_796420.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838645|ref|ZP_01991312.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ3810]
 gi|260362654|ref|ZP_05775553.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus K5030]
 gi|260877719|ref|ZP_05890074.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AN-5034]
 gi|260895632|ref|ZP_05904128.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus Peru-466]
 gi|28805023|dbj|BAC58304.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747973|gb|EDM58833.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ3810]
 gi|308088562|gb|EFO38257.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus Peru-466]
 gi|308089714|gb|EFO39409.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AN-5034]
 gi|308113730|gb|EFO51270.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus K5030]
 gi|328471594|gb|EGF42471.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus 10329]
          Length = 671

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKAESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++   +  + + F++ D++    L++E  +  L      + + LK+    I
Sbjct: 84  FHTLGLNIIKREYKQLGLKAGFSLFDDQDQMALLKELTEKQLD----GDKDLLKQLLSTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|308188833|ref|YP_003932964.1| rep helicase, a single-stranded DNA dependent ATPase [Pantoea
           vagans C9-1]
 gi|308059343|gb|ADO11515.1| rep helicase, a single-stranded DNA dependent ATPase [Pantoea
           vagans C9-1]
          Length = 673

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM
Sbjct: 4   NPSQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR LL           + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEARGLL-----------ISTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L++E  K  L     ++   L++    I   
Sbjct: 87  LGLEIIKRETAALGMKSNFSLFDDQDQLALLKELTKEWLE----EDKTLLQQLISTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|227114355|ref|ZP_03828011.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 673

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQAKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVSQTLGRKETR-------------------------------------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D++    L++E  +  L     ++   L++    I   
Sbjct: 87  LGLEIIKREYVALGMKSNFSLFDDQDQMALLKELTEQWLE----NDKVLLQQLISTISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|260900330|ref|ZP_05908725.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308108575|gb|EFO46115.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 1227

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 37  LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S +   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 97  RIHDARIAFARGQSYDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 156 TQNAFESG 163


>gi|163753956|ref|ZP_02161079.1| UvrD/REP helicase [Kordia algicida OT-1]
 gi|161326170|gb|EDP97496.1| UvrD/REP helicase [Kordia algicida OT-1]
          Length = 969

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 82/235 (34%), Gaps = 49/235 (20%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               +QL          + A  G+GKT  LV+R + L+     P  +L  T T+ AA E+
Sbjct: 5   NNPYQQLAIDTTEGPVLIIAGPGAGKTRTLVERTVNLIQKGTKPEEILVATFTEKAAKEL 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                                 L + I      + + T+H+
Sbjct: 65  VTRISNRL---------------------------------LELEIKVNLNEMYIGTLHS 91

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---------- 188
                ++++     +   + + D+   K  + +  +  +A   ++N+EE+          
Sbjct: 92  IFLRFLEEYREFTRLKRSYRLLDQFDQKFFLYQNMRDFVA---IENSEEILGGHNLSSWY 148

Query: 189 -KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
                   +    +E+++    ++IS   A   +   F  L+  K+ E++    +
Sbjct: 149 KADKLINYINKVGEENLD--FEELISAEDANISVIGEFYKLYIEKLNEENALDFS 201


>gi|70888451|gb|AAZ13818.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus]
          Length = 671

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKAESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E  +  L      + + L++    I
Sbjct: 84  FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLLSYI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|321252838|ref|XP_003192537.1| ATP-dependent DNA helicase [Cryptococcus gattii WM276]
 gi|317459006|gb|ADV20750.1| ATP-dependent DNA helicase, putative [Cryptococcus gattii WM276]
          Length = 1036

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 48/185 (25%)

Query: 16  LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
            ++     QL A  ++P+    + A  GSGKT +L  RV  L+      P+ ++ +T T 
Sbjct: 13  YLASLNQAQLKAVIANPSTPLQILAGPGSGKTRVLTCRVAYLVQHYKYSPNEIVAVTFTN 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +A EM  R+ +++                                       +    L 
Sbjct: 73  KSANEMRKRLQKLLGD-------------------------------------KQADQLV 95

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T HA C   ++++    +++++F IAD +  KK++        + I+ +    L +A 
Sbjct: 96  LGTFHATCVKYLRRYGRLIDLSNNFVIADADDCKKIM--------SGILKNRKAALDEAS 147

Query: 193 YEILE 197
             + E
Sbjct: 148 MSLKE 152


>gi|212703125|ref|ZP_03311253.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098]
 gi|212673391|gb|EEB33874.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098]
          Length = 963

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 36/160 (22%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T+ +Q + +       V A  G+GKT  LV+R++ L+      P  LL  T T+ AA E
Sbjct: 5   PTQQQQAVINHDEGPVLVIAGPGAGKTFTLVERIVHLVAHKGIQPEQLLVATFTEKAANE 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTI 136
           ++ R+                                  AR L+   ++     + V T+
Sbjct: 65  LTSRI----------------------------------ARRLMQEGVQANVDEMYVGTL 90

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+ C  ++++      +  +F + D+        +  +  
Sbjct: 91  HSICLRLLEEHREFTRLRKNFTLMDQFDQSYFFFQHLRQF 130


>gi|145639403|ref|ZP_01795008.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII]
 gi|145271450|gb|EDK11362.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII]
          Length = 671

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFVLLKELTADVLK----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|83747407|ref|ZP_00944446.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551]
 gi|207744777|ref|YP_002261169.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
           IPO1609]
 gi|83725864|gb|EAP73003.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551]
 gi|206596187|emb|CAQ63114.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
           IPO1609]
          Length = 705

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 30/142 (21%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++   
Sbjct: 21  DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +    + ++ +                              L V T H+    I++    
Sbjct: 81  TREDGKRIAIK-----------------------------QLTVCTFHSLGVQILRAEAE 111

Query: 150 EANITSHFAIADEEQSKKLIEE 171
              +   F+I D +    +I+E
Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133


>gi|238784760|ref|ZP_04628763.1| ATP-dependent DNA helicase rep [Yersinia bercovieri ATCC 43970]
 gi|238714356|gb|EEQ06365.1| ATP-dependent DNA helicase rep [Yersinia bercovieri ATCC 43970]
          Length = 673

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVSQTLGRKESR-------------------------------------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D +    L+++     L     D+   L++   +I   
Sbjct: 87  LGLEIIKKEYAALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|153836760|ref|ZP_01989427.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149749906|gb|EDM60651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 1227

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 37  LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S +   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 97  RIHDARIAFARGQSYDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 156 TQNAFESG 163


>gi|241664737|ref|YP_002983097.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240866764|gb|ACS64425.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 706

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 32/163 (19%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S  +  ++  +SE +   D      V A AGSGKT ++ Q++  L+L     P  +  +
Sbjct: 2   SSGLVHGLNAAQSEGVHYLD--GPCLVLAGAGSGKTRVITQKIAHLILDKGFEPKHIAAV 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV +++   +    + +  +                            
Sbjct: 60  TFTNKAAKEMQERVAKLMDGETREDGKRIPIK---------------------------- 91

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
             L V T H+    I++       +   F+I D +    +I+E
Sbjct: 92  -QLTVCTFHSLGVQILRAEAEHVGLKPRFSIMDSDDCFGMIQE 133


>gi|302771199|ref|XP_002969018.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii]
 gi|300163523|gb|EFJ30134.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii]
          Length = 1196

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 38/174 (21%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           S  +    +  ++ ++ +  L S+  +   + A  GSGKT  +V R+L LL        +
Sbjct: 252 SAADMPTYLRKLNVSQRDAAL-SNIDKPLLIVAGPGSGKTSTMVARILTLLNEGVDSKNI 310

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T AAA EM  RV  ++                                       
Sbjct: 311 LGMTFTTAAATEMMDRVAAVVGK------------------------------------- 333

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           E    L + T H+FC  + +    + N TS F +    Q +K + EA +  L +
Sbjct: 334 EASKELMISTFHSFCLQLCRSHAEKLNRTSEFLVYGASQQRKAVIEATRLALEA 387


>gi|260902656|ref|ZP_05911051.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ4037]
 gi|308109679|gb|EFO47219.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ4037]
          Length = 671

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKAESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++   +  + + F++ D++    L++E  +  L      + + LK+    I
Sbjct: 84  FHTLGLNIIKREYKQLGLKAGFSLFDDQDQMALLKELTEKQLD----GDKDLLKQLLSSI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|218512941|ref|ZP_03509781.1| exonuclease RexA [Rhizobium etli 8C-3]
          Length = 144

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
                 LL +T T+AAA EM  R+ E +    +   + +                    R
Sbjct: 2   GFDIDELLIVTFTEAAAREMKERIQEALQESVNSESDPVR-------------------R 42

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
                 L       + T+HAFC  +++++    +I   F +  +E    L++E     L 
Sbjct: 43  QHFTKQLVLLPTANISTLHAFCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELR 102

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
             +   N+E  + F   +  SND   + L + + S   
Sbjct: 103 EALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFSLYE 138


>gi|322514244|ref|ZP_08067305.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC
           25976]
 gi|322119856|gb|EFX91870.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC
           25976]
          Length = 1202

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 10/157 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHRVLEII 86
             +A + A+AG+GKT  +    LRLLL     P     +L +T TKAA  E+  R+ + I
Sbjct: 12  NCTALIEASAGTGKTFTMANLYLRLLLGIGCAPLTVEQILVVTFTKAATEELRDRIRKNI 71

Query: 87  TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            A      E  + +                 + +A   L           + TIH+FC+ 
Sbjct: 72  KACCTFLQEYDAEKSYDANDFFFQLGQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131

Query: 143 IMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTL 177
           ++ QF  ++     S     + +   +L EE  +   
Sbjct: 132 MLFQFAFDSGMRFDSDLQPDESDLLLRLSEEVWREMF 168


>gi|187479029|ref|YP_787053.1| DNA helicase [Bordetella avium 197N]
 gi|115423615|emb|CAJ50155.1| DNA helicase [Bordetella avium 197N]
          Length = 685

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 37/168 (22%)

Query: 15  DLISQTKSEQLLASD-----PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           D + +   +Q  A+      P      V A AGSGKT +L  RV +L+   A P  +L L
Sbjct: 10  DPLDELNPQQREAATFGIGQPDAPALLVIAGAGSGKTSVLAHRVAQLIRHGADPQRVLLL 69

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T ++ AA EM  R   ++                               R ++      P
Sbjct: 70  TFSRRAAQEMDRRAGGVL-------------------------------RRVMQLGAAAP 98

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                 T H+    +++       ++  F + D   ++ L+   +   
Sbjct: 99  SLPWAGTFHSVGARLLRDCATRIGLSESFTVHDRGDAEDLMGLLRHEL 146


>gi|328474312|gb|EGF45117.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus
           10329]
          Length = 1227

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 37  LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S++   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 97  RIHDARIAFARGRSSDPV-IQPLLNEFDDHKQAAEVLLQAERQMDEAAVYTIHGFCQRML 155

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 156 TQNAFESG 163


>gi|254292195|ref|ZP_04962964.1| ATP-dependent DNA helicase rep [Vibrio cholerae AM-19226]
 gi|150421897|gb|EDN13875.1| ATP-dependent DNA helicase rep [Vibrio cholerae AM-19226]
          Length = 432

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|117619432|ref|YP_858409.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560839|gb|ABK37787.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1205

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 22/180 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-------------------HPSTLLCLTHTKAAA 75
            + A+AG+GKT+ +    LRLLL +                      + +L +T T+AA 
Sbjct: 17  LIEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAAT 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+   I           S +    Q     +     AR LL           V T
Sbjct: 77  AELRGRIRGRIHEARLAFMRGESKDALLSQLLAEVEDHELAARRLLA-AERQMDEAAVFT 135

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH FC+ +++Q   E+   + F         +L  +A      S     ++ L  A   +
Sbjct: 136 IHGFCQRMLKQNAFESG--ALFETEFLTDDSQLRLQAVSDYWRSEFYPVDKPLASAVRAL 193


>gi|52425154|ref|YP_088291.1| RecB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307206|gb|AAU37706.1| RecB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1205

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 18/187 (9%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRV 82
             +  + A+AG+GKT  +    LRLLL               +L +T T+AA  E+  R+
Sbjct: 2   NSTLLIEASAGTGKTFTMASLYLRLLLQAGENCFFKPLEVEQILVVTFTEAATQELRERI 61

Query: 83  LEII--------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
              I            + + ++      +I     +  ++  A   L    +      + 
Sbjct: 62  RHRIHLAKKQLTQYAENKNKQVFYGTENEILADLVDSLELPVAIQRLKIAEQNMDLAAIY 121

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH FC  ++ Q+   + I  HF +   +   +L+             + +  L    + 
Sbjct: 122 TIHGFCRRMLVQYAFNSGI--HFNLQLVKDETELLTRFSNELWREHFYNLSFSLTNFIHR 179

Query: 195 ILEISND 201
            L+   D
Sbjct: 180 NLKSPTD 186


>gi|307256414|ref|ZP_07538196.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865044|gb|EFM96945.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 1202

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 10/174 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             +A + A+AG+GKT  +    LRLLL    A+     +L +T TKAA  E+  R+   I
Sbjct: 12  NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71

Query: 87  TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            A      E  + +                 + +A   L           + TIH+FC+ 
Sbjct: 72  KACRRFLQEYDAEKSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           ++ QF  ++ +   F    +     L+    +     +          A  E L
Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYL 183


>gi|318607671|emb|CBY29169.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 674

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D +    L+++     L     D+   L++   +I   
Sbjct: 87  LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|288573981|ref|ZP_06392338.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569722|gb|EFC91279.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 1160

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 9   EHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           E +   D+++     +++   +       VSA AG+GKT  L  R +  +    A    +
Sbjct: 6   EIASLTDMVNSATLPAQKEAITAEESLVVVSAGAGTGKTWTLAWRFVWAVATGRARAGEI 65

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT T  AA EM+ R+  +                  ++G  P   ++      L   L
Sbjct: 66  LTLTFTDKAATEMAERIRLL------------------MEGLLPKTKELPTVAAALREGL 107

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167
           E+     + TIH+F   ++++  L  ++     +    +   
Sbjct: 108 ESLEDSYISTIHSFSSRVIRESGLSLDLDPASRVVSAPEEDL 149


>gi|300702548|ref|YP_003744148.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
 gi|299070209|emb|CBJ41500.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
          Length = 705

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++   
Sbjct: 21  DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +    + +  +                              L V T H+    I++    
Sbjct: 81  TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111

Query: 150 EANITSHFAIADEEQSKKLIEE 171
              +   F+I D +    +I+E
Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133


>gi|217968706|ref|YP_002353940.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506033|gb|ACK53044.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 663

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L++  + E +   D      V A AGSGKT ++  ++  L+      P+ +  +T T  A
Sbjct: 4   LLNAPQREAIRYLD--GPCLVLAGAGSGKTRVITHKIAHLINECGISPNNIAAITFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  I+                                         PGGL V 
Sbjct: 62  AKEMQERVAHIMGGRV-------------------------------------PGGLTVC 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T HA    I++Q      +   F+I D   + +++ +  
Sbjct: 85  TFHALGVRIVRQEAKHCGLKPQFSILDASDTVQIVSDVA 123


>gi|29829618|ref|NP_824252.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606726|dbj|BAC70787.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 1202

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 31/182 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 38  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 97

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +        +++  +                           PG   + 
Sbjct: 98  AGELAERVRKALVKAGITDPDVIDPD-------------------------NPPGEPVIS 132

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +             L ++F +
Sbjct: 133 TYHAFAGRLLTDHGLRIGLEPTARLLADATRYQLAARVLRE-----APGPYPALTRSFPD 187

Query: 195 IL 196
           ++
Sbjct: 188 LV 189


>gi|207722204|ref|YP_002252641.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
           MolK2]
 gi|206587379|emb|CAQ17962.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
           MolK2]
          Length = 705

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++   
Sbjct: 21  DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +    + +  +                              L V T H+    I++    
Sbjct: 81  TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111

Query: 150 EANITSHFAIADEEQSKKLIEE 171
              +   F+I D +    +I+E
Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133


>gi|227497414|ref|ZP_03927646.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833090|gb|EEH65473.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
          Length = 1152

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 33/229 (14%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           +  + +   T  +  +   P     V A AGSGKT  + QRV+ L+ + A  P  +L LT
Sbjct: 22  ARALGIHEPTPEQAAVICHPLSPVLVVAGAGSGKTATMSQRVVYLVASGAVEPGEVLGLT 81

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AAAE++ R+   + A +         E     G  P                    
Sbjct: 82  FTRKAAAELAQRISVRLDALAGSGLIERDEE-----GLDP-------------------- 116

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              + T ++F   I++   L   +     +  E ++ +++    +     + L++   + 
Sbjct: 117 --TIATYNSFAGTIVRDHGLRIGVDPDATLITEARAWQVVSAIVERRRQPLPLESPARVT 174

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +    +    +    E L+ ++   R  L  +  FF  L   + ++ ++
Sbjct: 175 ELVLAL----DGALCENLL-EVDQAREQLGELDSFFESLATVRGLKTAV 218


>gi|85711556|ref|ZP_01042614.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
           baltica OS145]
 gi|85694708|gb|EAQ32648.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
           baltica OS145]
          Length = 1230

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 20/185 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRL-------------LLANAHPSTLLCLTHTKAAAAE 77
             S  + A+AG+GKT+ +    +RL             L     P  +L +T TKAA  E
Sbjct: 14  AGSRLIEASAGTGKTYTIAALYVRLVIGMRADSDSNAALETPLLPRNILVMTFTKAATEE 73

Query: 78  MSHRVLEIITAWSHL--SDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLK 132
           +S R+   +   +     D+ ++A+    Q +  +++    ++    LL    E+     
Sbjct: 74  LSDRIRARLAEAARYFRDDDSVAADPFLTQLRATSEAQGESLNYLARLLELASESMDEAA 133

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V+TIH +C++++++    +   S F    E   ++L  +A +      +  ++   + A 
Sbjct: 134 VKTIHGWCQSMLKEHAFASG--SLFTQNVETDDEELRRQAAEDYFRRFIYQSDRATQTAL 191

Query: 193 YEILE 197
             + +
Sbjct: 192 LAVFD 196


>gi|84394502|ref|ZP_00993213.1| ATP-dependent DNA helicase Rep [Vibrio splendidus 12B01]
 gi|84374879|gb|EAP91815.1| ATP-dependent DNA helicase Rep [Vibrio splendidus 12B01]
          Length = 672

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 43/179 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +       +    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL V T H 
Sbjct: 64  KERVGQTLGKGESK-------------------------------------GLIVSTFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
               I+++      + + F++ D++    L++E     L    +D +++L ++    + 
Sbjct: 87  MGLTIIRREYKALGLKAGFSLFDDQDQLALLKE-----LTETQIDGDKDLLRSLMSTIS 140


>gi|239993847|ref|ZP_04714371.1| ATP-dependent DNA helicase Rep [Alteromonas macleodii ATCC 27126]
          Length = 671

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 38/163 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75
           +   ++++   +  +    V A AGSGKT ++  ++  L+     P+  +  +T T  AA
Sbjct: 1   MKLNEAQESAVTFVSGPCLVLAGAGSGKTRVITNKIAHLVRNCDMPARYIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GLKV T
Sbjct: 61  REMKERVAQTLGK--------------------------PEAR-----------GLKVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            H     I++    +  +   F++ D++ S  L+ +    TL 
Sbjct: 84  FHTMGLTIIKAHVKDLGLKPGFSLFDDKDSFALLNDLTSDTLD 126


>gi|54307318|ref|YP_128338.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           SS9]
 gi|46911738|emb|CAG18536.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           SS9]
          Length = 673

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 76/226 (33%), Gaps = 44/226 (19%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+   +     +  LT T  AA
Sbjct: 1   MKLNSRQTEAVKYISGPCLVLAGAGSGKTRVITNKIAYLVQHCDYKARNIAALTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGKTLGKKEAK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + ++F++ D++    L++E     L    LD +++L K     
Sbjct: 84  FHTLGLNIIRREYKALGLKANFSLFDDQDQMALLKE-----LTEAELDGDKDLLKLLQSA 138

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +    +E +    +   +     +L    +  L++R++   +    
Sbjct: 139 ISNWKNEMLSAAEAQAYAQSERDQLFAHCYE-LYQRQMKAYNALDF 183


>gi|225075585|ref|ZP_03718784.1| hypothetical protein NEIFLAOT_00599 [Neisseria flavescens
           NRL30031/H210]
 gi|224953007|gb|EEG34216.1| hypothetical protein NEIFLAOT_00599 [Neisseria flavescens
           NRL30031/H210]
          Length = 389

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 37/203 (18%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92
            + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R+   +     + 
Sbjct: 19  LIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVL 78

Query: 93  ---------------------------SDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
                                       D+ L+  I    G++  +    +    L   L
Sbjct: 79  NEIQTLGGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAAL 138

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--------EEAKKSTL 177
                  + TIH FC+ +++ +           ++D+ + + LI        + A  +TL
Sbjct: 139 SQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATL 198

Query: 178 ASIMLDNNEELKKAFYEILEISN 200
           A ++ D     ++   EI   + 
Sbjct: 199 AQLVFDRKCTPEEILAEIKSYTG 221


>gi|150401988|ref|YP_001329282.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|159906221|ref|YP_001549883.1| UvrD/REP helicase [Methanococcus maripaludis C6]
 gi|150033018|gb|ABR65131.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|159887714|gb|ABX02651.1| UvrD/REP helicase [Methanococcus maripaludis C6]
          Length = 946

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 39/147 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
           TKS+            V A  G+GKT  ++++V+ L+      P+ LL +T T  AA E+
Sbjct: 9   TKSQMDAIKYVESPLLVVAGPGTGKTRTIIEKVVYLVEELGYDPNKLLVVTFTIKAADEL 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + +                                            +++ TIH+
Sbjct: 69  KDRLRKRLGDRVET--------------------------------------MQISTIHS 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS 165
           FC+ +++ FP   N  S F + DE   
Sbjct: 91  FCQRMLEMFPEYHNYGSVFEVMDELDQ 117


>gi|22124272|ref|NP_667695.1| ATP-dependent DNA helicase Rep [Yersinia pestis KIM 10]
 gi|45442925|ref|NP_994464.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Microtus
           str. 91001]
 gi|21957041|gb|AAM83946.1|AE013636_4 rep helicase, a single-stranded DNA dependent ATPase [Yersinia
           pestis KIM 10]
 gi|45437792|gb|AAS63341.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Microtus
           str. 91001]
          Length = 691

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 22  NPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 81

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 82  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 104

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D +    L+++     L     D+   L++    I   
Sbjct: 105 LGLEIIKKEYVALGMKSNFSLFDAQDQMGLLKDLTHKWLE----DDKTLLQQLVSAISNW 160

Query: 199 SND 201
            ND
Sbjct: 161 KND 163


>gi|28572402|ref|NP_789182.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27]
 gi|28410533|emb|CAD66919.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei
           TW08/27]
          Length = 973

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 37/232 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA- 60
           +     +     ++L + T+ ++ +   P  +A V A AGSGKT  LV R+L L+ +   
Sbjct: 3   MSLRDSRHMCSILNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLVLRLLWLIASGKL 62

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P +++ LT T+ AA E++ R+ + +   +  + ++LS EI  +                
Sbjct: 63  KPESIMGLTFTRKAAGELASRLQKSLAILNSYTGDVLSPEIDVL---------------- 106

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                         T ++F  +I Q   L  +    +   ++ +++ +     +  L   
Sbjct: 107 --------------TYNSFANSIYQDNALLLDHPVPYTAIEDSEAQLI----ARRLLVEH 148

Query: 181 MLDNNE--ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
            LD +E  E        L   +D  ++ L+     N+ A + I F  ++   
Sbjct: 149 GLDEDEPSETIDNLASSLIKLDDAIVDNLLDLGELNQFASEFIEFVGAFDAP 200


>gi|307245198|ref|ZP_07527289.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254145|ref|ZP_07535990.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306853842|gb|EFM86056.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862845|gb|EFM94794.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
          Length = 1202

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 10/174 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             +A + A+AG+GKT  +    LRLLL    A+     +L +T TKAA  E+  R+   I
Sbjct: 12  NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71

Query: 87  TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            A      E  + +                 + +A   L           + TIH+FC+ 
Sbjct: 72  KACRRFLQEYDAEKSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           ++ QF  ++ +   F    +     L+    +     +          A  E L
Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYL 183


>gi|118467070|ref|YP_883295.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium
           104]
 gi|118168357|gb|ABK69254.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium
           104]
          Length = 1096

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 22/164 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S +E +  + L   T+ +  + + P     V A AG+GKT  +  RV+ L+    AHP  
Sbjct: 6   SPRELACALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAHPGQ 65

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA ++  RV   +   + +    L A         P  + +          
Sbjct: 66  VLGLTFTRKAAGQLLRRVRSRLARLAGVG---LGAASPNHGAVDPEAAPV---------- 112

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                   V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 113 --------VSTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQL 148


>gi|269960508|ref|ZP_06174880.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834585|gb|EEZ88672.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1212

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGTTDTKHHVPLTVDQILVVTFTEAATAELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S +   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 82  RIHDARIAFARGQSLDPV-IQPLLEEVEDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 140

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 141 TQNAFESG 148


>gi|261749252|ref|YP_003256937.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497344|gb|ACX83794.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 855

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 12/154 (7%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEII 86
           P+     +A+AGSGKT  LV+  L LLL + HP     +L +T T  A+ E+  R+L+ I
Sbjct: 9   PSTLKIYNASAGSGKTFFLVKNYLYLLLKSPHPEEFKRILAITFTNKASEEIKKRILQCI 68

Query: 87  TAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             +S+         +     K           +++++L  IL+      + TI  F    
Sbjct: 69  KEFSNQKIRKEYHFLFDHLTKSLKLTKDQLFERSKNILYAILDDFSSFSISTIDKFTYRT 128

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           ++ F  + NI        E  +KK + E     L
Sbjct: 129 IRSFLYKKNIN------LEMDAKKFLWELVDKLL 156


>gi|309789677|ref|ZP_07684258.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
 gi|308228413|gb|EFO82060.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
          Length = 641

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 38/132 (28%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L S    ++     P     V A AGSGKT +L  R+  L+   A PS +L LT T  AA
Sbjct: 4   LRSLNPEQRAAVLAPVGPVLVRAGAGSGKTRVLTLRIAHLISIGAKPSQILALTFTNKAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + + A +                                       GL   T
Sbjct: 64  REMRERLRKQLGAGAR--------------------------------------GLVAGT 85

Query: 136 IHAFCEAIMQQF 147
            HA C  I+++ 
Sbjct: 86  FHAVCVRILREM 97


>gi|167625835|ref|YP_001676129.1| ATP-dependent DNA helicase Rep [Shewanella halifaxensis HAW-EB4]
 gi|167355857|gb|ABZ78470.1| ATP-dependent DNA helicase Rep [Shewanella halifaxensis HAW-EB4]
          Length = 671

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 43/168 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           +    V A AGSGKT +++ ++  L+         +  +T T  AA EM  RV + +   
Sbjct: 15  SGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAAREMKERVSQSMGR- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                     +AR           GL + T H     I+++   
Sbjct: 74  -------------------------KEAR-----------GLWISTFHTLGLEIIKREHK 97

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              +   F++ D++ +  L++E  +  L     D +++L K     + 
Sbjct: 98  VVGLKPGFSLFDDQDTFALLKELTQDEL-----DEDKDLLKLLASTIS 140


>gi|51246731|ref|YP_066615.1| ATP-dependent DNA helicase UvrD [Desulfotalea psychrophila LSv54]
 gi|50877768|emb|CAG37608.1| Probable ATP-dependent DNA helicase, UvrD/REP family [Desulfotalea
           psychrophila LSv54]
          Length = 733

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 56/172 (32%), Gaps = 38/172 (22%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           N        IDL     ++ L  +       V A AGSGKT  L+ RV  LL     P +
Sbjct: 7   NFATADPSPIDLSGLNPAQHLAVTTTEGPVLVIAGAGSGKTRTLIYRVAHLLDKGVAPES 66

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ A+ EM  R  E++                                      
Sbjct: 67  ILLLTFTRKASQEMVWRAGELLG------------------------------------- 89

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            E    +   T H     +++Q+         F I D   ++ +I   K S 
Sbjct: 90  -ENCSRVMGGTFHGVANMLLRQYGSHMGWGKGFTIIDRADAEGIINLLKSSL 140


>gi|323493181|ref|ZP_08098311.1| ATP-dependent DNA helicase Rep [Vibrio brasiliensis LMG 20546]
 gi|323312528|gb|EGA65662.1| ATP-dependent DNA helicase Rep [Vibrio brasiliensis LMG 20546]
          Length = 672

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 44/186 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  + E +     +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 3   LNPNQDEAVKYV--SGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                       +   GL V T
Sbjct: 61  REMKERVGQTLGK-------------------------------------QEAKGLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E  +  L      + + L++    I
Sbjct: 84  FHTLGLNIIKREYKALGLKAGFSLFDDQDQMALLKELTEKQLD----GDKDLLRQLLSTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|311111762|ref|YP_003982984.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
 gi|310943256|gb|ADP39550.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
          Length = 1449

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 23/170 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S +E +  + L   T  +  +   P     V A AGSGKT  +V RV+ L+         
Sbjct: 38  SAREIAHALGLNPPTDEQVRIIESPLEPRLVIAGAGSGKTATMVDRVVWLVANKIVRADE 97

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T+ AA E+  R+   +      +   LS E       +P               
Sbjct: 98  VLGVTFTRKAAGELRDRMRTRLNILRERNLIELSEEELLAGSSEP--------------- 142

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
                   V T H++   +++++ L   +     +  + Q+ +L  +  +
Sbjct: 143 -------TVSTYHSYANNLVKEYGLRLGVEQDAQMLGDAQAWQLAAQIVQ 185


>gi|121610666|ref|YP_998473.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121555306|gb|ABM59455.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 1142

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 38/155 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++   ++   A+    +  + A  G+GKT  LV+R+  LL     P+T+L LT +  AA 
Sbjct: 199 LTPDPTQAQAAAHRGLAFQLQAGPGTGKTRTLVRRIEGLLADGVDPTTILVLTFSNKAAN 258

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+       +                                        + + T 
Sbjct: 259 ELCERIAASNPVAAAA--------------------------------------MWIGTF 280

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           HAF   I+++F     +     + D  ++ +L+E+
Sbjct: 281 HAFGLDIVRRFHDRLALLPDPRLIDRTEAIELLED 315


>gi|283476651|emb|CAY72479.1| ATP-dependent DNA helicase RepA [Erwinia pyrifoliae DSM 12163]
          Length = 697

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM  R
Sbjct: 31  QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAYLIRECGYQARHIAAVTFTNKASREMKER 90

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 91  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 113

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D++    L+++  +  L     ++   L++    I    ND
Sbjct: 114 EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEQWLE----NDKNLLQQLVSTISNWKND 169

Query: 202 E-DIETLISDIISNRTAL 218
             D     +  +S R  L
Sbjct: 170 LMDPPRAAAGALSERDKL 187


>gi|330429634|gb|AEC20968.1| ATP-dependent DNA helicase [Pusillimonas sp. T7-7]
          Length = 717

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 40/161 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  + + +L  D      V A AGSGKT ++ Q++  LL         ++ LT T  AA
Sbjct: 13  MNAMQRQAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYQARQVVALTFTNKAA 70

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EMS RV +++                                       +   GL V T
Sbjct: 71  REMSERVKQLVDG-------------------------------------KLAKGLTVST 93

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+     +++  + A +   F+I D   +  +I+E   +T
Sbjct: 94  FHSLGLRFLREEAVHAGLKPQFSILDSNDALAIIQELLATT 134


>gi|213582726|ref|ZP_03364552.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 433

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 43/159 (27%)

Query: 48  LVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
           LV R+  LL + N  P +++ +T T  AAAEM HR+ +++                    
Sbjct: 2   LVHRIAWLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT------------------ 43

Query: 107 KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
                               + GG+ V T H     +++   ++AN+   F I D E   
Sbjct: 44  --------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQM 83

Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           +L+    K  + ++ LD  +   +     +    DE + 
Sbjct: 84  RLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 118


>gi|28493486|ref|NP_787647.1| DNA helicase II [Tropheryma whipplei str. Twist]
 gi|28476528|gb|AAO44616.1| putative DNA helicase II [Tropheryma whipplei str. Twist]
          Length = 973

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 37/232 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA- 60
           +     +     ++L + T+ ++ +   P  +A V A AGSGKT  LV R+L L+ +   
Sbjct: 3   MSLRDSRHMCSILNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLVLRLLWLIASGKL 62

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P +++ LT T+ AA E++ R+ + +   +  + ++LS EI  +                
Sbjct: 63  KPESIMGLTFTRKAAGELASRLQKSLAILNSYTGDVLSPEIDVL---------------- 106

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                         T ++F  +I Q   L  +    +   ++ +++ +     +  L   
Sbjct: 107 --------------TYNSFANSIYQDNALLLDHPVPYTAIEDSEAQLI----ARRLLVEH 148

Query: 181 MLDNNE--ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
            LD +E  E        L   +D  ++ L+     N+ A + I F  ++   
Sbjct: 149 GLDEDEPSETIDNLASSLIKLDDAIVDNLLDLGELNQFASEFIEFVGAFDAP 200


>gi|253690376|ref|YP_003019566.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756954|gb|ACT15030.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 675

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 43/208 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKETR-------------------------------------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L++E     L    L+N++ L +     +  
Sbjct: 87  LGLEIIKREYAALGMKSNFSLFDDQDQMALLKE-----LTEQWLENDKVLLQQLISTISN 141

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFS 226
             ++ I+   +   +     KL    +S
Sbjct: 142 WKNDLIDPAGAAATARSERDKLFVHCYS 169


>gi|238798859|ref|ZP_04642327.1| ATP-dependent DNA helicase rep [Yersinia mollaretii ATCC 43969]
 gi|238717309|gb|EEQ09157.1| ATP-dependent DNA helicase rep [Yersinia mollaretii ATCC 43969]
          Length = 673

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKESR-------------------------------------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D +    L+++     L     D+   L++    I   
Sbjct: 87  LGLEIIKKEYAALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISAISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|163802159|ref|ZP_02196054.1| ATP-dependent DNA helicase Rep [Vibrio sp. AND4]
 gi|159173964|gb|EDP58774.1| ATP-dependent DNA helicase Rep [Vibrio sp. AND4]
          Length = 671

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKAESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H    +I+++      + + F++ D++    L++E  +  L      + + L++    I
Sbjct: 84  FHTLGLSIIKREYKHLGLKAGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLLSCI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|303249732|ref|ZP_07335936.1| exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251919|ref|ZP_07533820.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651299|gb|EFL81451.1| exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860611|gb|EFM92623.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 1202

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 10/174 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             +A + A+AG+GKT  +    LRLLL    A+     +L +T TKAA  E+  R+   I
Sbjct: 12  NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71

Query: 87  TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            A      E  + +                 + +A   L           + TIH+FC+ 
Sbjct: 72  KACRRFLQEYDAEKSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           ++ QF  ++ +   F    +     L+    +     +          A  E L
Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYL 183


>gi|261823432|ref|YP_003261538.1| ATP-dependent DNA helicase Rep [Pectobacterium wasabiae WPP163]
 gi|261607445|gb|ACX89931.1| ATP-dependent DNA helicase Rep [Pectobacterium wasabiae WPP163]
          Length = 673

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 43/208 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM
Sbjct: 4   NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQARHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                                           GL + T H 
Sbjct: 64  KERVAQTLGRKETR-------------------------------------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++      + S+F++ D++    L++E     L    L+N++ L +     +  
Sbjct: 87  LGLEIIKREYAALGMKSNFSLFDDQDQIALLKE-----LTEQWLENDKVLLQQLISTISN 141

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFS 226
             ++ I+   +   +     KL    +S
Sbjct: 142 WKNDLIDPAGAAATARSERDKLFVHCYS 169


>gi|37678224|ref|NP_932833.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus YJ016]
 gi|37196963|dbj|BAC92804.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus YJ016]
          Length = 672

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKGESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + S F++ D++    L++E  +  L      + + L++    I
Sbjct: 84  FHTLGLNIIKREYRHLGLKSGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLMSTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|330721132|gb|EGG99258.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC2047]
          Length = 672

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 38/159 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +    K +QL      +   V A AGSGKT ++  ++  L+  A      +  +T T  A
Sbjct: 1   MSKLNKQQQLAIITNDKPLLVLAGAGSGKTTVITHKIAHLVNKAGIEARHIYAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + +                                       +T   + V 
Sbjct: 61  AREMKERVAKQLKG-------------------------------------DTAKAISVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H     I+++     +I   F++ D   +  LI+E  
Sbjct: 84  TFHNLGLTIIRKEYKHLDIKPGFSLFDAHDALTLIKELI 122


>gi|260775078|ref|ZP_05883977.1| ATP-dependent DNA helicase Rep [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608995|gb|EEX35155.1| ATP-dependent DNA helicase Rep [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 672

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 44/186 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  + E +     +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 3   LNPNQDEAVKYV--SGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKNESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + S F++ D++    L++E  +  L      + + L++    I
Sbjct: 84  FHTLGLNIIKREYKALGLKSGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLLSTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|309780454|ref|ZP_07675203.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA]
 gi|308920782|gb|EFP66430.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA]
          Length = 706

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++   
Sbjct: 21  DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPKHIAAVTFTNKAAKEMQERVAKLMDGK 80

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +    + +  +                              L V T H+    I++    
Sbjct: 81  TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111

Query: 150 EANITSHFAIADEEQSKKLIEE 171
              +   F+I D +    +I+E
Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133


>gi|90416555|ref|ZP_01224486.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2207]
 gi|90331754|gb|EAS46982.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2207]
          Length = 676

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 40/169 (23%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           S    +Q           V A AGSGKT ++ Q++  L+         +  +T T  AA 
Sbjct: 4   SLNPQQQAALKYIDGPLLVLAGAGSGKTSVITQKIAYLVEECGIPARNIAAVTFTNKAAR 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV  +++                                          GL V T 
Sbjct: 64  EMKARVASLLSGADGR-------------------------------------GLTVSTF 86

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--AKKSTLASIMLD 183
           H     I++           F+I D+E  + L++E  A+ + L   ++D
Sbjct: 87  HNLGLNIIRSEIKALGFKPGFSILDQEDCRNLLKELLARNTELDEKLID 135


>gi|261250075|ref|ZP_05942652.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891]
 gi|260939579|gb|EEX95564.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891]
          Length = 671

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPNQDAAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKNESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + S F++ D++    L++E  +  L      + + L++    I
Sbjct: 84  FHTLGLNIIKREYKALGLKSGFSLFDDQDQMALLKELTEKQLD----GDKDLLRQLLSTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|253996605|ref|YP_003048669.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253983284|gb|ACT48142.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 672

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 40/171 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ++ ++  + E +   D      V A AGSGKT ++ Q++  L+      P  +  +T T
Sbjct: 1   MLNSMNSPQREAVKYLD--GPLLVLAGAGSGKTRVITQKISYLINEAGYAPKEIAAITFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++                                           GL
Sbjct: 59  NKAALEMQERVGKLMQGT-------------------------------------NIKGL 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            + T H+    +++           F+I D   S K++ +   +T   ++ 
Sbjct: 82  TIATFHSLGLQMLRAEATLLGYKPQFSILDSSDSFKILADVLATTDKQLLR 132


>gi|315656388|ref|ZP_07909277.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492947|gb|EFU82549.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 1191

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T+ +  + + P     V A AGSGKT  +  R++  ++     P  +L LT T+ AAAE
Sbjct: 25  PTREQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAE 84

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILETP------- 128
           M+ R    +  ++ L + +     T       K    D+++ R    T+++         
Sbjct: 85  MAARFSLRLDRFASLLESVQERRQTAEVNAVLKAADFDLNQLRQRFDTLVQRGMTSEMLR 144

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             + V T  ++   ++ +F       S F    +    +++ +  +    ++      E 
Sbjct: 145 HPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQIWTGALGTKREGEN 204

Query: 189 KKAFYE-ILEISNDED 203
            +     +L ++ND +
Sbjct: 205 AENLVNILLSLANDTN 220


>gi|315181034|gb|ADT87948.1| exodeoxyribonuclease V, beta subunit [Vibrio furnissii NCTC 11218]
          Length = 1214

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTFTIAGLYLRLLLGHGSEHTRHASALTVDQILVVTFTEAATAELRDRIRA 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + L+     ++   IQ       D   A  LL+          V TIH FC+ ++
Sbjct: 84  RIHD-ARLAFSRGKSDDPVIQPLLAEFVDHPLATRLLLNAERQMDEAAVYTIHGFCQRML 142

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 143 TQNAFESG 150


>gi|239929059|ref|ZP_04686012.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 374

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 31/182 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 16  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGRVAPEQVLGLTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +        +++  +                           PG   + 
Sbjct: 76  AGELAERVRKALIKAGVTDPDVIDPD-------------------------NPPGEPVIS 110

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +             L ++F +
Sbjct: 111 TYHAFAGRLLTDHGLRIGLEPSSRLLADATRYQLAARVLRE-----APGPYPALTRSFPD 165

Query: 195 IL 196
           ++
Sbjct: 166 LV 167


>gi|238880904|gb|EEQ44542.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 864

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 85/215 (39%), Gaps = 38/215 (17%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANA 60
           +   S Q   + ++ ++  + + + A    R   + A  G+GKT +L+ RV  LL+  N 
Sbjct: 1   MMSTSNQVLDKILESLNANQRKAVTAPCNGR-LQIIAGPGTGKTKVLISRVAYLLISENI 59

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  ++  T TK AA EM  R+ +++       D+++                       
Sbjct: 60  RPDNMIVTTFTKRAANEMIERLTKLVEGTDINIDKLI----------------------- 96

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                       + T H+ C  I++++    ++  ++ IADE     +++    +  A  
Sbjct: 97  ------------IGTFHSICFRIIKKYGKLIDLE-NYTIADERDKSYILKTMLTNLSAKD 143

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
           +   +   +++  ++     +E    L   +IS +
Sbjct: 144 IERLDSFGEESLQKLRSQKANEKYHGLDLSVISKK 178


>gi|190149661|ref|YP_001968186.1| exodeoxyribonuclease V subunit beta [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307260844|ref|ZP_07542530.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307262969|ref|ZP_07544591.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914792|gb|ACE61044.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306869411|gb|EFN01202.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306871595|gb|EFN03317.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 1202

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 10/174 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             +A + A+AG+GKT  +    LRLLL    A+     +L +T TKAA  E+  R+   I
Sbjct: 12  NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71

Query: 87  TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            A      E  + +                 + +A   L           + TIH+FC+ 
Sbjct: 72  KACRRFLQEYDAEKSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           ++ QF  ++ +   F    +     L+    +     +          A  E L
Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPVGLTETAAVAEYL 183


>gi|156975569|ref|YP_001446476.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Vibrio harveyi
           ATCC BAA-1116]
 gi|156527163|gb|ABU72249.1| hypothetical protein VIBHAR_03301 [Vibrio harveyi ATCC BAA-1116]
          Length = 1212

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGTANTKHRVPLTVDQILVVTFTEAATAELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S++   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 82  RIHDARIAFARGKSSDPV-IQPLLGEIEDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 140

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 141 TQNAFESG 148


>gi|127511239|ref|YP_001092436.1| ATP-dependent DNA helicase Rep [Shewanella loihica PV-4]
 gi|126636534|gb|ABO22177.1| ATP-dependent DNA helicase Rep [Shewanella loihica PV-4]
          Length = 670

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 43/168 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           +    V A AGSGKT +++ ++  L+         +  +T T  AA EM  RV + +   
Sbjct: 15  SGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARNIAAVTFTNKAAREMKERVAQSMGR- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                     +AR           GL + T H     I+++   
Sbjct: 74  -------------------------KEAR-----------GLWISTFHTLGLEIIKREYK 97

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              +   F++ D++ +  L++E     L     D +++L +     + 
Sbjct: 98  VVGLKPGFSLFDDQDTLALLKE-----LTEKEFDGDKDLLRMLMTAIS 140


>gi|258622035|ref|ZP_05717063.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM573]
 gi|258625852|ref|ZP_05720727.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM603]
 gi|258581816|gb|EEW06690.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM603]
 gi|258585688|gb|EEW10409.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM573]
          Length = 678

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 8   MKLNPRQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 68  REMKERVAQTLGKAESR-------------------------------------GLMVST 90

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++   +  + + F++ D++    L++E     L    LD +++L +     
Sbjct: 91  FHTLGLNIIRREYKQLGLKAGFSLFDDQDQMALLKE-----LTEKQLDGDKDLLRLLLST 145

Query: 196 LE 197
           + 
Sbjct: 146 IS 147


>gi|323499832|ref|ZP_08104791.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326]
 gi|323315073|gb|EGA68125.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326]
          Length = 1206

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHQAPLTVDQILVVTFTEAATAELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I A + L+    S+    I        D  +A  +L+          V TIH FC+ ++
Sbjct: 82  RIHA-ARLAFSRGSSHDPVIAPLLEEMPDHKQAAEVLLQAERQMDEAAVYTIHGFCQRML 140

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 141 TQNAFESG 148


>gi|262273633|ref|ZP_06051447.1| ATP-dependent DNA helicase Rep [Grimontia hollisae CIP 101886]
 gi|262222611|gb|EEY73922.1| ATP-dependent DNA helicase Rep [Grimontia hollisae CIP 101886]
          Length = 672

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 45/205 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHHVSGPCLVLAGAGSGKTRVITNKIAYLVQHCGYKARHIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + ++                                          GL V T
Sbjct: 61  REMKERVGQTLSRQETR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L+++     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREYKSLGLKAGFSLFDDQDQIALLKD-----LTEKELDGDKDLLRLLLHT 138

Query: 196 LEISNDEDI--ETLISDIISNRTAL 218
           +    ++ +  +   S  +  R  L
Sbjct: 139 ISNWKNDMLTPQQAQSAAMGERDQL 163


>gi|260771453|ref|ZP_05880378.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972]
 gi|260613579|gb|EEX38773.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972]
          Length = 1214

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 24  LIEASAGTGKTFTIAGLYLRLLLGHGSEHTRHASALTVDQILVVTFTEAATAELRDRIRA 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + L+     ++   IQ       D   A  LL+          V TIH FC+ ++
Sbjct: 84  RIHD-ARLAFSRGKSDDPVIQPLLAEFVDHPLATRLLLNAERQMDEAAVYTIHGFCQRML 142

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 143 TQNAFESG 150


>gi|187930550|ref|YP_001901037.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|187727440|gb|ACD28605.1| UvrD/REP helicase [Ralstonia pickettii 12J]
          Length = 706

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++   
Sbjct: 21  DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +    + +  +                              L V T H+    I++    
Sbjct: 81  TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRTEAE 111

Query: 150 EANITSHFAIADEEQSKKLIEE 171
              +   F+I D +    +I+E
Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133


>gi|260912802|ref|ZP_05919288.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
 gi|260633180|gb|EEX51345.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
          Length = 671

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNSQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLVEKCGYLPRQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + I                                       E   GL V T
Sbjct: 61  REMKERVAQSIGK-------------------------------------EASRGLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L+    ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKHLGFKSNMTLFDEHDQLALLKELTADLLS----EDKDLLRELISTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|117618529|ref|YP_858660.1| ATP-dependent DNA helicase Rep [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559936|gb|ABK36884.1| ATP-dependent DNA helicase Rep [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 670

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT ++  ++  L+     +   +  +T T  AA
Sbjct: 1   MKLNPNQNEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYNARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL V T
Sbjct: 61  REMKERVGQTLGR--------------------------KEAR-----------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++     N+ ++F++ D+     L++E  ++ L     ++ ++L     +I
Sbjct: 84  FHTLGLEVIRREHKSLNLKANFSLFDDTDQLALLKELTEAELD----NDKDKLSALISQI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|290957554|ref|YP_003488736.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647080|emb|CBG70179.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 1223

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 31/182 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +      P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 26  GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +        +++  +                           PG   + 
Sbjct: 86  AGELAERVRKALVRAGITDPDVIDPD-------------------------HPPGEPVIS 120

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +             L ++F +
Sbjct: 121 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----SPGPYPALTRSFPD 175

Query: 195 IL 196
           ++
Sbjct: 176 LV 177


>gi|255348990|ref|ZP_05380997.1| DNA helicase [Chlamydia trachomatis 70]
 gi|255503529|ref|ZP_05381919.1| DNA helicase [Chlamydia trachomatis 70s]
 gi|255507207|ref|ZP_05382846.1| DNA helicase [Chlamydia trachomatis D(s)2923]
 gi|296435215|gb|ADH17393.1| DNA helicase [Chlamydia trachomatis E/150]
 gi|296438934|gb|ADH21087.1| DNA helicase [Chlamydia trachomatis E/11023]
          Length = 634

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 38/163 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2   LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  RV        +    +                                    V
Sbjct: 62  AANELKERVQSQCRELGYSDVPM------------------------------------V 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+++     +  S+F I D+  S+K I++  +  
Sbjct: 86  STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKSIKQCLRKL 128


>gi|320154905|ref|YP_004187284.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus MO6-24/O]
 gi|326423797|ref|NP_760033.2| ATP-dependent DNA helicase Rep [Vibrio vulnificus CMCP6]
 gi|319930217|gb|ADV85081.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus MO6-24/O]
 gi|319999164|gb|AAO09560.2| ATP-dependent DNA helicase Rep [Vibrio vulnificus CMCP6]
          Length = 672

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKGESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + S F++ D++    L++E  +  L      + + L++    I
Sbjct: 84  FHTLGLNIIKREYRHLGLKSGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLMSTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|226946792|ref|YP_002801865.1| ATP-dependent DNA helicase Rep protein [Azotobacter vinelandii DJ]
 gi|226721719|gb|ACO80890.1| ATP-dependent DNA helicase Rep protein [Azotobacter vinelandii DJ]
          Length = 669

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 59/202 (29%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVTYVGGPLLVLAGAGSGKTSVITRKIAYLIQHCGIQARHIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGSLLRGAEGK-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++          F+I DE   K L+ +  +                      E 
Sbjct: 88  LGLNIIRREHARLGYKPGFSIFDEGDIKTLVADIMQK---------------------EY 126

Query: 199 SNDEDIETLISDIISNRTALKL 220
           + D+  + +I  I + +  L L
Sbjct: 127 AGDDGADQVIQQIGAWKNDLIL 148


>gi|51594519|ref|YP_068710.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
           32953]
 gi|108806144|ref|YP_650060.1| ATP-dependent DNA helicase Rep [Yersinia pestis Antiqua]
 gi|108810257|ref|YP_646024.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516]
 gi|145600739|ref|YP_001164815.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides F]
 gi|153997074|ref|ZP_02022207.1| ATP-dependent DNA helicase Rep [Yersinia pestis CA88-4125]
 gi|162419101|ref|YP_001605104.1| ATP-dependent DNA helicase Rep [Yersinia pestis Angola]
 gi|165926312|ref|ZP_02222144.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939683|ref|ZP_02228226.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009458|ref|ZP_02230356.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213533|ref|ZP_02239568.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167402081|ref|ZP_02307560.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420825|ref|ZP_02312578.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425939|ref|ZP_02317692.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468461|ref|ZP_02333165.1| ATP-dependent DNA helicase Rep [Yersinia pestis FV-1]
 gi|170026248|ref|YP_001722753.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis YPIII]
 gi|218930873|ref|YP_002348748.1| ATP-dependent DNA helicase Rep [Yersinia pestis CO92]
 gi|229837205|ref|ZP_04457370.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides A]
 gi|229839567|ref|ZP_04459726.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229900129|ref|ZP_04515266.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900424|ref|ZP_04515553.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516]
 gi|270488781|ref|ZP_06205855.1| ATP-dependent DNA helicase Rep [Yersinia pestis KIM D27]
 gi|294505534|ref|YP_003569596.1| ATP-dependent DNA helicase Rep [Yersinia pestis Z176003]
 gi|51587801|emb|CAH19403.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
           32953]
 gi|108773905|gb|ABG16424.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516]
 gi|108778057|gb|ABG12115.1| ATP-dependent DNA helicase Rep [Yersinia pestis Antiqua]
 gi|115349484|emb|CAL22458.1| ATP-dependent DNA helicase Rep [Yersinia pestis CO92]
 gi|145212435|gb|ABP41842.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides F]
 gi|149289380|gb|EDM39458.1| ATP-dependent DNA helicase Rep [Yersinia pestis CA88-4125]
 gi|162351916|gb|ABX85864.1| ATP-dependent DNA helicase Rep [Yersinia pestis Angola]
 gi|165912373|gb|EDR31007.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921836|gb|EDR39033.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991380|gb|EDR43681.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205206|gb|EDR49686.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960954|gb|EDR56975.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048555|gb|EDR59963.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055087|gb|EDR64886.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169752782|gb|ACA70300.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis YPIII]
 gi|229682443|gb|EEO78530.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516]
 gi|229686909|gb|EEO78988.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695933|gb|EEO85980.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706148|gb|EEO92157.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides A]
 gi|262363600|gb|ACY60321.1| ATP-dependent DNA helicase Rep [Yersinia pestis D106004]
 gi|262367528|gb|ACY64085.1| ATP-dependent DNA helicase Rep [Yersinia pestis D182038]
 gi|270337285|gb|EFA48062.1| ATP-dependent DNA helicase Rep [Yersinia pestis KIM D27]
 gi|294355993|gb|ADE66334.1| ATP-dependent DNA helicase Rep [Yersinia pestis Z176003]
 gi|320013528|gb|ADV97099.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 673

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D +    L+++     L     D+   L++    I   
Sbjct: 87  LGLEIIKKEYVALGMKSNFSLFDAQDQMGLLKDLTHKWLE----DDKTLLQQLVSAISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|190576450|ref|YP_001974295.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas
           maltophilia K279a]
 gi|190014372|emb|CAQ48020.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas
           maltophilia K279a]
          Length = 1226

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 11/174 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D       +  LA        + A+AG+GKT  L     RL++        +L +T T A
Sbjct: 8   DGSESLSRDPYLALSLEGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDA 67

Query: 74  AAAEMSHRVLEIITAWSHL------SDEILSAEITKIQGKKP---NKSDMSKARHLLITI 124
           A  E+  R+ E +   + L       DE     +T+   ++         +  +  L   
Sbjct: 68  ATQELRKRIRERLALAARLVDLEAADDEAPEVRLTRDVLQRHLQCGTESAAALKRRLQVA 127

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            +      + TIH FC  ++++  LE+  T           ++L+EE       
Sbjct: 128 ADEIDLASIFTIHGFCTRVLREHALESGHTFDPPELLASD-RELLEELAADLWR 180


>gi|254506751|ref|ZP_05118891.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16]
 gi|219550332|gb|EED27317.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16]
          Length = 1194

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 10  LIEASAGTGKTFTIAGLYLRLLLGHGSSETQHQTPLTVDQILVVTFTEAATAELRDRIRA 69

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + L+          IQ       D  +A ++L+          V TIH FC+ ++
Sbjct: 70  RIHD-ARLAFARGQTHDPVIQPLLEEIDDHKQAANILLQAERQMDEAAVYTIHGFCQRML 128

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 129 TQNAFESG 136


>gi|300714779|ref|YP_003739582.1| ATP-dependent DNA helicase rep [Erwinia billingiae Eb661]
 gi|299060615|emb|CAX57722.1| ATP-dependent DNA helicase rep [Erwinia billingiae Eb661]
          Length = 673

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D++    L+++  +  L     ++   L++    I    ND
Sbjct: 90  EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEEWLE----NDKTLLQQLISTISNWKND 145

Query: 202 E-DIETLISDIISNRTAL 218
             D     +  +S R  L
Sbjct: 146 LMDPSRAAAGAVSERDKL 163


>gi|262172724|ref|ZP_06040402.1| ATP-dependent DNA helicase Rep [Vibrio mimicus MB-451]
 gi|261893800|gb|EEY39786.1| ATP-dependent DNA helicase Rep [Vibrio mimicus MB-451]
          Length = 671

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKAESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++   +  + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREYKQLGLKAGFSLFDDQDQMALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|325971006|ref|YP_004247197.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324026244|gb|ADY13003.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 672

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 39/184 (21%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
             ++  +   +Q   A+       V A AGSGKT +L  R+  +L       ++L LT T
Sbjct: 2   YFNIEKELNDQQCKAAATLYGPLLVIAGAGSGKTRMLTYRIANMLQNGIKEESILALTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +                                              
Sbjct: 62  NKAAKEMGERIRSLTNLKLKKLTTTT---------------------------------- 87

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                H+F   +++Q+       ++F I D      LI+E  ++    +   +  EL   
Sbjct: 88  ----FHSFGMGVLKQYIQYLGFKNNFTIYDTNDRMALIKEVIQNLDYVVETFDLYELSSL 143

Query: 192 FYEI 195
           F +I
Sbjct: 144 FSDI 147


>gi|186893517|ref|YP_001870629.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis PB1/+]
 gi|186696543|gb|ACC87172.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis PB1/+]
          Length = 673

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D +    L+++     L     D+   L++    I   
Sbjct: 87  LGLEIIKKEYVALGMKSNFSLFDAQDQMGLLKDLTHKWLE----DDKTLLQQLVSAISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|118618002|ref|YP_906334.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
 gi|118570112|gb|ABL04863.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
          Length = 1101

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 27/170 (15%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S  E +  + +   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  
Sbjct: 6   SPDEIASALGIFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQ 65

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA ++  RV   +   +                             + + +
Sbjct: 66  VLGLTFTRKAAGQLLRRVRSRLARLAGT--------------------------TVGVAV 99

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            E  G   V T HAF  ++++   L   I     +  E +  +L  E   
Sbjct: 100 GEAAGAPTVSTYHAFAGSLLRDHGLLLPIEPDTRLLSETELWQLAFEVVN 149


>gi|259906859|ref|YP_002647215.1| ATP-dependent DNA helicase Rep [Erwinia pyrifoliae Ep1/96]
 gi|224962481|emb|CAX53936.1| ATP-dependent DNA helicase Rep [Erwinia pyrifoliae Ep1/96]
          Length = 673

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAYLIRECGYQARHIAAVTFTNKASREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D++    L+++  +  L     ++   L++    I    ND
Sbjct: 90  EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEQWLE----NDKNLLQQLVSTISNWKND 145

Query: 202 E-DIETLISDIISNRTAL 218
             D     +  +S R  L
Sbjct: 146 LMDPPRAAAGALSERDKL 163


>gi|121607593|ref|YP_995400.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121552233|gb|ABM56382.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 697

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 38/152 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++         +  V A AGSGKT ++  ++  ++     P  +  +T T  AAAEM  R
Sbjct: 8   AQLRAIHYTDGACLVLAGAGSGKTRVITHKIAHMIERGLEPGRIAAITFTNKAAAEMRER 67

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
              +I                             +A+ +L           V T HA   
Sbjct: 68  ARGLIG---------------------------RRAKEVL-----------VCTFHALGV 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            +++       +   F+I D +    ++++A 
Sbjct: 90  RMLRADGARLGLKPQFSILDADDVTGILKDAA 121


>gi|289525651|emb|CBJ15132.1| DNA helicase [Chlamydia trachomatis Sweden2]
          Length = 634

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 38/163 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+  +   P  +L +T T  
Sbjct: 2   LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  RV        +    +                                    V
Sbjct: 62  AANELKERVQSQCRELGYSDVPM------------------------------------V 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+++     +  S+F I D+  S+K I++  +  
Sbjct: 86  STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKSIKQCLRKL 128


>gi|124514841|gb|EAY56353.1| putative UvrD/REP helicase [Leptospirillum rubarum]
          Length = 649

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 40/204 (19%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S  ++++++ + E + A  P   A V A AGSGKT +L  RV  LL        +L LT
Sbjct: 2   DSRILNVLNEEQREAVTA--PDGPALVLAGAGSGKTRVLTHRVAWLLEKGVPAHRMLVLT 59

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            TK AA  + HR+ +++T    L                                     
Sbjct: 60  FTKKAARVLQHRLADLLTGPQVL------------------------------------- 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            L   T H     ++++F           + D E    L++    +    +  +     +
Sbjct: 83  -LWAGTFHHVGYRLLREFGSRIGYAGTPVVIDREDQVDLLKSILSAFPEGLRKELPPAGQ 141

Query: 190 KAFYEILEISNDEDIETLISDIIS 213
                 L  ++   +E +I D  S
Sbjct: 142 ILNAISLSRNSMVSLEDVIYDRFS 165


>gi|91791771|ref|YP_561422.1| ATP-dependent DNA helicase Rep [Shewanella denitrificans OS217]
 gi|91713773|gb|ABE53699.1| ATP-dependent DNA helicase Rep [Shewanella denitrificans OS217]
          Length = 670

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++ +  L+++     L     D +++L KA    
Sbjct: 84  FHTLGLEIIKREYKVLGLKAGFSLFDDQDTLALLKD-----LTEDEFDGDKDLLKALASA 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|37680798|ref|NP_935407.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016]
 gi|37199547|dbj|BAC95378.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016]
          Length = 1221

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 14/145 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA  E+  R+  
Sbjct: 37  LIEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIRA 96

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + L+     ++   I+    +  D  +A  +L+          V TIH FC+ ++
Sbjct: 97  RIHD-ARLAFARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHGFCQRML 155

Query: 145 QQFPLEAN--ITSHFAIADEEQSKK 167
            Q   E+     + F + DE Q K 
Sbjct: 156 TQNAFESGSRFNNEF-VTDESQLKA 179


>gi|315125768|ref|YP_004067771.1| UvrD family helicase [Pseudoalteromonas sp. SM9913]
 gi|315014282|gb|ADT67620.1| UvrD family helicase [Pseudoalteromonas sp. SM9913]
          Length = 638

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 85/212 (40%), Gaps = 46/212 (21%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +IS + S+Q +   D   +  + A+AGSGKT +L +R+ R +L N     +L LT T  A
Sbjct: 1   MISLSPSQQEIVEFDIKSAIQILASAGSGKTRVLTERI-RYILNNTKKDKVLALTFTNKA 59

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ + +                                              V 
Sbjct: 60  AQEMQERLADFVGVEERT---------------------------------------WVS 80

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIAD-EEQSKKLIEEAKKS---TLASIMLDNNEELKK 190
           TIH+  ++I++ +     ++S   I + ++   +L  ++ +     +   +  N+   K+
Sbjct: 81  TIHSVAQSIIESYGHTIGLSSDLHIYERDQDRMELFLQSLRDSNINIDEYLNINDPAEKR 140

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIF 222
              ++++   D     +  ++++ R  +++ F
Sbjct: 141 KRNQVMQDYMDA-FAEIKRELLTERDEIEVRF 171


>gi|261496545|ref|ZP_05992925.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261307748|gb|EEY09071.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype
           A2 str. OVINE]
          Length = 672

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q        +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE+    L+    K  L   + ++ + LK     I
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEQDQIALL----KHLLPENVTEDKDLLKALIATI 139

Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232
               ND    E +++ +   R  +    F+  Y  + K
Sbjct: 140 SNWKNDLLSPERVLTRVRDERERV-FSHFYQLYQNQLK 176


>gi|41409398|ref|NP_962234.1| hypothetical protein MAP3300c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398229|gb|AAS05850.1| hypothetical protein MAP_3300c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 1096

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 22/164 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S +E +  + L   T+ +  + + P     V A AG+GKT  +  RV+ L+    AHP  
Sbjct: 6   SPRELACALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAHPGQ 65

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA ++  RV   +   + +    L A         P  + +          
Sbjct: 66  VLGLTFTRKAAGQLLRRVRSRLARLAGVG---LGAASPNHGAVDPEAAPV---------- 112

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                   V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 113 --------VSTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQL 148


>gi|300741871|ref|ZP_07071892.1| UvrD/REP helicase [Rothia dentocariosa M567]
 gi|300381056|gb|EFJ77618.1| UvrD/REP helicase [Rothia dentocariosa M567]
          Length = 1444

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 23/170 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S +E +  + L   T  +  +   P     V A AGSGKT  +V RV+ L+         
Sbjct: 33  SAREIARALGLNPPTDEQVRIIESPLEPRLVIAGAGSGKTATMVDRVVWLVANKIVRADE 92

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T+ AA E+  R+   +      +   LS E       +P               
Sbjct: 93  VLGVTFTRKAAGELRDRMRTRLNILRERNLIELSEEELLAGSSEP--------------- 137

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
                   V T H++   +++++ L   +     +  + Q+ +L  +  +
Sbjct: 138 -------TVSTYHSYANNLVKEYGLRLGVEQDAQMLGDAQAWQLAAQIVQ 180


>gi|329297877|ref|ZP_08255213.1| ATP-dependent DNA helicase Rep [Plautia stali symbiont]
          Length = 673

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+
Sbjct: 1   MRFNPGQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAS 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQTLGR--------------------------KEAR-----------GLMIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + S F++ D++    L+++  K  L     ++   L++    I
Sbjct: 84  FHTLGLEIIKREYKALGMKSTFSLFDDQDQLALLKDLTKQWLE----EDKTLLQQLISTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|323499661|ref|ZP_08104629.1| ATP-dependent DNA helicase Rep [Vibrio sinaloensis DSM 21326]
 gi|323315262|gb|EGA68305.1| ATP-dependent DNA helicase Rep [Vibrio sinaloensis DSM 21326]
          Length = 672

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGK-------------------------------------NEAKGLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + S F++ D++    L++E     L    LD +++L ++    
Sbjct: 84  FHTLGLTIIKREYKALGLKSGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRSLLSA 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|15602381|ref|NP_245453.1| hypothetical protein PM0516 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720777|gb|AAK02600.1| RecB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1230

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 16/166 (9%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRV 82
            +   + A+AG+GKT+ +    LRLLL               +L +T T+AA  E+  R+
Sbjct: 15  NKVCLIEASAGTGKTYTIGSLYLRLLLQAGENSFSQPLTVEQILVVTFTEAATEELKGRI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKK------PNKSDMSKARHLLITILETPGGLKVQTI 136
            E I                 +Q          + SD+  A   L    +T     + TI
Sbjct: 75  RERIHQAKKALIAYQEQGEQALQDDPFLLACLASISDLDLAIQRLTIAEQTMDLAAIYTI 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           H FC  ++ Q+   + +  HF +   +    L+E   K+       
Sbjct: 135 HGFCRRMLMQYAFHSRV--HFNLTLNKDETALLERLFKAFWREHFY 178


>gi|326423891|ref|NP_760677.2| exodeoxyribonuclease V subunit beta [Vibrio vulnificus CMCP6]
 gi|319999264|gb|AAO10204.2| exodeoxyribonuclease V, beta subunit [Vibrio vulnificus CMCP6]
          Length = 1221

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 14/145 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA  E+  R+  
Sbjct: 37  LIEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIRA 96

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + L+     ++   I+    +  D  +A  +L+          V TIH FC+ ++
Sbjct: 97  RIHD-ARLAFARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHGFCQRML 155

Query: 145 QQFPLEAN--ITSHFAIADEEQSKK 167
            Q   E+     + F + DE Q K 
Sbjct: 156 TQNAFESGSRFNNEF-VTDESQLKA 179


>gi|317153478|ref|YP_004121526.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943729|gb|ADU62780.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 715

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 42/205 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++           V A AGSGKT  +V R+  L+     P+ +L LT T+ AA EM 
Sbjct: 8   NNAQREAVLTTEGPVLVIAGAGSGKTRTIVYRLAHLVRQGVDPAQILLLTFTRKAAQEM- 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                                             +++A  +L   L    G    T H+F
Sbjct: 67  ----------------------------------LARAGAILGHPLTGTSG---GTFHSF 89

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             A +++   +    + F + D    + +  + K++    +   +    KKA   +L++ 
Sbjct: 90  AYATLRRNTSDIGFGNGFTLMDRADCEAVCRDVKETL--KLGKGDRSYPKKA--TLLDMI 145

Query: 200 NDEDIETLISDIISNRTALKLIFFF 224
                + L    +  R A  L  + 
Sbjct: 146 TKSRNKELTIATVMEREAYHLSPYL 170


>gi|56461631|ref|YP_156912.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
           loihiensis L2TR]
 gi|56180641|gb|AAV83363.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
           loihiensis L2TR]
          Length = 1241

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 21/183 (11%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH--------------PSTLLCLTHTKAAAA 76
             S  + A+AG+GKT+ +    +RL++ +                P  +L +T TKAA  
Sbjct: 26  NSSRLIEASAGTGKTYTIAALYVRLVIGHGSHNGAEETAFDRELVPKNILVMTFTKAATE 85

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK-----SDMSKARHLLITILETPGGL 131
           E+S R+   +   +    +  + E                 ++     LL    ++    
Sbjct: 86  ELSDRIRARLAEAAAYFRDPEAVEGDPFLASLREDCAAQGQNLMHLARLLDLASQSMDEA 145

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V+TIH +C++++++    +   S F+   E  +++L  +A        +   + EL   
Sbjct: 146 AVKTIHGWCQSMLKEHAFASG--SLFSQDVETDNEELRLQAAGDYFRRFIYPADAELSAR 203

Query: 192 FYE 194
             E
Sbjct: 204 LLE 206


>gi|320155533|ref|YP_004187912.1| exodeoxyribonuclease V subunit beta RecB [Vibrio vulnificus
           MO6-24/O]
 gi|319930845|gb|ADV85709.1| exodeoxyribonuclease V beta chain RecB [Vibrio vulnificus MO6-24/O]
          Length = 1206

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 14/145 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA  E+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I   + L+     ++   I+    +  D  +A  +L+          V TIH FC+ ++
Sbjct: 82  RIHD-ARLAFARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEAN--ITSHFAIADEEQSKK 167
            Q   E+     + F + DE Q K 
Sbjct: 141 TQNAFESGSRFNNEF-VTDESQLKA 164


>gi|121730735|ref|ZP_01682841.1| acriflavin resistance plasma membrane protein [Vibrio cholerae V52]
 gi|121627693|gb|EAX60345.1| acriflavin resistance plasma membrane protein [Vibrio cholerae V52]
          Length = 356

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 886

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 15/169 (8%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q  +  + + + T+ +  + +       V A AGSGKT  + QRV+ L+      P  +L
Sbjct: 12  QALAAALGIHTPTQEQARVIAHRLSPLLVVAGAGSGKTATMAQRVVHLVATGQVRPDQIL 71

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+ A AE+  RV   +   S       +A       +  + +D+            
Sbjct: 72  GLTFTRKATAELDQRVASRLADLSAAGLLPATASDDDGGVRAADATDV------------ 119

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             G   + T ++F   +++   L   +     +  + +S +++    ++
Sbjct: 120 --GEPMIATYNSFAGTLVRDHGLRIGVDPDSTLITQARSWQIVSSLLEA 166


>gi|297620279|ref|YP_003708416.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU
           86-1044]
 gi|297375580|gb|ADI37410.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU
           86-1044]
          Length = 1120

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 77/192 (40%), Gaps = 12/192 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIIT 87
                + A+AG+GKT  +   V+RLLL   HP     +L +T TK A +++  RV + I 
Sbjct: 35  DSHIILEASAGTGKTFSIENLVVRLLLEGEHPLRIDEILIVTFTKMATSDLRVRVRDTIE 94

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
              +  ++ +      ++    ++     A  LL   L      ++ TIH FC  ++ + 
Sbjct: 95  NVVNALEKGVLGRFDYLEPIDRDERKKRPAIRLLERALIGFDEAQIFTIHGFCYRMLAEH 154

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-----KAFYEILEISNDE 202
            ++  +          + K + E+  K  +         + +     + F    +  + E
Sbjct: 155 GMDGCVHPDPK----NEGKGIREDTYKKCVMDYFRTGLSDERIGLQHRNFALSSQRGSVE 210

Query: 203 DIETLISDIISN 214
            +E  +  +I+ 
Sbjct: 211 RLEKTLGKLIAE 222


>gi|254994829|ref|ZP_05277019.1| DNA helicase II (uvrD) [Anaplasma marginale str. Mississippi]
          Length = 660

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           + E   L+S  + ++           + A AG+GKT  +  R+  ++    A PS +L +
Sbjct: 18  NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 77

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV EI+                                          
Sbjct: 78  TFTNKAAREMLVRVSEIVDTT--------------------------------------- 98

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            G+ + T HA    I++       +   F +   +   +LI+     T
Sbjct: 99  -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 145


>gi|241767147|ref|ZP_04764910.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241362257|gb|EER58285.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 778

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 39/159 (24%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +     QL A      +  V A AGSGKT ++  ++  ++     P  +  +T T  A
Sbjct: 88  MSAGLNLAQLQAVHYTQGACLVLAGAGSGKTRVITHKIAHMIEQGLEPRRIAAITFTNKA 147

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R   +I                             +A+ +L           V 
Sbjct: 148 AAEMRERAKGLIG---------------------------RRAKDVL-----------VC 169

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T HA    ++++      +   F+I D +    ++++A 
Sbjct: 170 TFHALGVRMVREDGAVLGLKPQFSIMDADDVAGILKDAA 208


>gi|284033229|ref|YP_003383160.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812522|gb|ADB34361.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1079

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 93/264 (35%), Gaps = 47/264 (17%)

Query: 7   FQEHSETIDLIS--QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
            +  ++ +DL+    +  +    + P     + A AGSGKT  +  RV+ L+      P 
Sbjct: 5   LESTADLVDLLGIPFSDQQLEAITAPLAPGVIVAGAGSGKTTAMAARVVWLICTGQVKPE 64

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT TK AA E+  R+ E +T    L   +            P       A HL   
Sbjct: 65  EVLGLTFTKKAANELDVRIREDLTKAGVLGSTL------------PPDQHPILAAHLRKN 112

Query: 124 I----LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---- 175
           +     E PG   V T HAF   ++ +  L   +     +  +    +L     +     
Sbjct: 113 VPNWEPEEPGEPVVSTYHAFAGTLIAEHGLRLGLEPDVRVLADATRYQLAGRVVRRSAGP 172

Query: 176 ---------TLASIMLDNNEELKKAFYEILEISN-DEDIET--------------LISDI 211
                    TL + +L  + EL        EI + DE +                L    
Sbjct: 173 IRYASHHVPTLVNSLLSLDGELADHLLRADEIRDHDEAVRQEVAAAPKQTVEVKKLAETA 232

Query: 212 ISNRTALKLIFFFFSYLWRRKIIE 235
           +     L+L+  + +Y   R +++
Sbjct: 233 LKRGEILQLVEEYQAYKAERGVVD 256


>gi|89073889|ref|ZP_01160396.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
 gi|89050424|gb|EAR55925.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
          Length = 671

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+   +     +  LT T  AA
Sbjct: 1   MKLNPRQTEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARNIAALTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGRQESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + S F++ D++    L++E  +  L      + + LK+    I
Sbjct: 84  FHTLGLNIIRREYKHLGLKSSFSLFDDQDQMALLKELTEDELE----GDKDLLKQLMSSI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|90415087|ref|ZP_01223044.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
 gi|90323791|gb|EAS40406.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
          Length = 673

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 44/226 (19%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +            V A AGSGKT ++  ++  L+   +     +  LT T  AA
Sbjct: 1   MKLNSRQTEAVKYIAGPCLVLAGAGSGKTRVITNKIAYLVQHCDYKARNIAALTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGKTLGKKEAK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + ++F++ D++    L++E  +  L     D +++L K     
Sbjct: 84  FHTLGLNIIRREYKALGLKANFSLFDDQDQMALLKELTEDEL-----DGDKDLLKLLQSA 138

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +    +E +    +   +     +L    +  L++R++   +    
Sbjct: 139 ISNWKNEMLSAAEAQAYAQSERDQLFAHCYE-LYQRQMKAYNALDF 183


>gi|157377279|ref|YP_001475879.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3]
 gi|157319653|gb|ABV38751.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3]
          Length = 670

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 43/168 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           T    V A AGSGKT +++ ++  L+        T+  +T T  AA EM  RV + +   
Sbjct: 15  TGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARTIAAVTFTNKAAREMKERVAQSMGR- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                     +AR           GL + T H     I+++   
Sbjct: 74  -------------------------KEAR-----------GLWISTFHTLGLEIIKREHK 97

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              +   F++ D++ S  L++E     L     D +++L K     + 
Sbjct: 98  VVGLKPGFSLFDDQDSLALLKE-----LTEDEFDGDKDLLKMLMTAIS 140


>gi|312142659|ref|YP_003994105.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
 gi|311903310|gb|ADQ13751.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
          Length = 1039

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 9/193 (4%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +  + A+AG+GKT+ L    L  +        ++ +T T+ A AE+  R++E +      
Sbjct: 2   NKILKASAGTGKTYRLSLEYLNAVFEGTDFRNIVVMTFTRKATAEIRERIIEHLKNLKEN 61

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-QQFPLEA 151
             +    E  K       +  + +   +   IL +   + V TI +F   I  +      
Sbjct: 62  GIDSDVYEELKKISSLTGEKILLQVDSVFEEILSSKEKINVYTIDSFVNKIFKRSIAPYL 121

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIETLISD 210
            I   + + D+++      E+ +     I+ D       + F         +D   +I+D
Sbjct: 122 GIK-TYEVTDKDE------ESAEKVFKKILEDEQVFAQMEGFLTENRSRRIKDYTDIIAD 174

Query: 211 IISNRTALKLIFF 223
           II+ R   +LI +
Sbjct: 175 IINQRWKFELIDY 187


>gi|260776643|ref|ZP_05885538.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607866|gb|EEX34131.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1206

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGCAESKHQQPLTVDQILVVTFTEAATAELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S +   IQ       D S+A  +L+          V TIH FC+ ++
Sbjct: 82  RIHDARLAFSRGQSGDPV-IQPLLEAIDDHSQAAEILLQAERQMDEAAVYTIHGFCQRML 140

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 141 TQNAFESG 148


>gi|170724835|ref|YP_001758861.1| ATP-dependent DNA helicase Rep [Shewanella woodyi ATCC 51908]
 gi|169810182|gb|ACA84766.1| ATP-dependent DNA helicase Rep [Shewanella woodyi ATCC 51908]
          Length = 670

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 43/168 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           +    V A AGSGKT +++ ++  L+        T+  +T T  AA EM  RV + +   
Sbjct: 15  SGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARTIAAVTFTNKAAREMKERVAQSMGR- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                     +AR           GL + T H     ++++   
Sbjct: 74  -------------------------KQAR-----------GLWISTFHTLGLEVIKREHK 97

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              +   F++ D++ S  L++E     L     D +++L K     + 
Sbjct: 98  VIGLKPGFSLFDDQDSLALLKE-----LTEDEFDGDKDLLKNLMTAIS 140


>gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505]
 gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505]
          Length = 1142

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q  +E + + + T+ +  + +       V A AGSGKT  + QRV+ L+      P  +L
Sbjct: 12  QALAEALGIHTPTQEQARVIAHRLSPLLVVAGAGSGKTATMAQRVVYLVATGQVRPDQIL 71

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+ A AE+  RV   +   S               G  P  +    +         
Sbjct: 72  GLTFTRKATAELDQRVASRLAGLSAA-------------GLLPATAPEHDSGAEGTADAT 118

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G   + T ++F   +++   L   +     +  + +S
Sbjct: 119 DVGEPMIATYNSFAGTLVRDHGLRIGVDPDSTLITQARS 157


>gi|206602356|gb|EDZ38837.1| Putative UvrD/REP helicase [Leptospirillum sp. Group II '5-way CG']
          Length = 649

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 40/204 (19%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S  ++++++ + E + A  P   A V A AGSGKT +L  RV  LL        +L LT
Sbjct: 2   DSRILNVLNEEQREAVTA--PDGPALVLAGAGSGKTRVLTHRVAWLLEKGVPAHRMLVLT 59

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            TK AA  + HR+ +++T    L                                     
Sbjct: 60  FTKKAARVLQHRLADLLTGPQVL------------------------------------- 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            L   T H     ++++F      T    + D E    L++    +    +  +      
Sbjct: 83  -LWAGTFHHVGYRLLREFGSRIGYTGSPVVIDREDQVDLLKSILSAFPEGLRKELPPAGL 141

Query: 190 KAFYEILEISNDEDIETLISDIIS 213
                 L  ++   +E +I D  S
Sbjct: 142 ILNAISLSRNSMLSLEDVIYDRFS 165


>gi|113461072|ref|YP_719140.1| DNA helicase/exodeoxyribonuclease V subunit beta [Haemophilus
           somnus 129PT]
 gi|112823115|gb|ABI25204.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Haemophilus
           somnus 129PT]
          Length = 1216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 16/159 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKTH +V   +RLLL               +L +T+T+ A  E+  R+ E I
Sbjct: 35  LIEASAGTGKTHSIVSLYIRLLLQAGENNFSQALEVDQILVVTYTEMATQELKQRIRERI 94

Query: 87  TAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                   +          E   +Q   P   D+  A + L           V TIH+FC
Sbjct: 95  YQTKQALIQYQQHQNKTLLEDQFLQELLPYIKDIDLAVYRLTLAERNLDISAVSTIHSFC 154

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
             ++ Q+   + +  +  +  +E   +LI+         
Sbjct: 155 RRVLMQYAFNSGVHFNMELVSDE--SELIQRLANELWRE 191


>gi|330827920|ref|YP_004390872.1| exodeoxyribonuclease V subunit beta [Aeromonas veronii B565]
 gi|328803056|gb|AEB48255.1| Exodeoxyribonuclease V, beta subunit [Aeromonas veronii B565]
          Length = 1199

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-------------------HPSTLLCLTHTKAAA 75
            + A+AG+GKT+ +    LRLLL +                      + +L +T T+AA 
Sbjct: 17  LIEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAAT 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+   I           S++    Q     +     AR LL           V T
Sbjct: 77  AELRGRIRGRIHEARLAFMRGHSSDTLLAQLLAEVEDHELAARRLLA-AERQMDEAAVFT 135

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH FC+ +++Q   E+   + F         +L  +A      +     ++ L  +   +
Sbjct: 136 IHGFCQRMLKQNAFESG--ALFETEFLTDDSQLRLQAVSDYWRAEFYPVDKTLASSVRAL 193


>gi|212633276|ref|YP_002309801.1| ATP-dependent DNA helicase RepA [Shewanella piezotolerans WP3]
 gi|212554760|gb|ACJ27214.1| ATP-dependent DNA helicase RepA [Shewanella piezotolerans WP3]
          Length = 670

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 43/168 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           +    V A AGSGKT +++ ++  L+         +  +T T  AA EM  RV + +   
Sbjct: 15  SGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAAREMKERVSQSMGR- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                     +AR           GL + T H     I+++   
Sbjct: 74  -------------------------KEAR-----------GLWISTFHTLGLEIIKREHK 97

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              +   F++ D++ +  L++E     L     D +++L +     + 
Sbjct: 98  VVGLKPGFSLFDDQDTLALLKELTLDEL-----DEDKDLLRLLATTIS 140


>gi|254362674|ref|ZP_04978761.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213]
 gi|153094293|gb|EDN75157.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213]
          Length = 672

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q        +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVDHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE+    L+    K  L   + ++ + LK     I
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEQDQIALL----KHLLPENVTEDKDLLKALIATI 139

Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232
               ND    E +++ +   R  +    F+  Y  + K
Sbjct: 140 SNWKNDLLSPERVLTRVRDERERV-FSHFYQLYQNQLK 176


>gi|323144233|ref|ZP_08078864.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas
           hippei YIT 12066]
 gi|322415985|gb|EFY06688.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas
           hippei YIT 12066]
          Length = 1304

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 29/180 (16%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----------STLLCLTHTKAAAAEMS 79
             S+ + A+AG+GKT  +   VLRLLL + +              +L +T T+AAA+++ 
Sbjct: 16  NNSSLIEASAGTGKTFTITYLVLRLLLGSGNAKTRLKQGPLDLDQILIVTFTRAAASDLR 75

Query: 80  HRVLEIITAWS------------HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            R+ E I                   DE L+  + ++QGK  +  D S    +L      
Sbjct: 76  KRIRENIRQAKEAFDEFAKDPEYRAKDEPLNDLLVEMQGKGISPKDCS---QILNKAERG 132

Query: 128 PGGLKVQTIHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                + TIH+FC   + Q +  EA     F  A  +     + EA  S    +     +
Sbjct: 133 IDTAAICTIHSFCNRALNQIYAFEAG--EAFETALTDDVSGQMNEALISLWRELFYTKED 190


>gi|229512505|ref|ZP_04401977.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TMA 21]
 gi|229350504|gb|EEO15452.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TMA 21]
          Length = 671

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|315604922|ref|ZP_07879980.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313461|gb|EFU61520.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 1138

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 31/186 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAA 75
           + T  +  +   P R   V A AGSGKT  +  RVL LL  +    P+++L LT T+ AA
Sbjct: 17  TPTPEQVRVVESPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLTPASILGLTFTRKAA 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+   I   +                            HL   +   P  L   T
Sbjct: 77  GELGDRLRARIRLLAEAMP------------------------HLRERLDADPVSL---T 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            ++F E I+ +  +   I   F++  E  +  ++ +  ++    +  D       A  ++
Sbjct: 110 YNSFAERIVSEHGMRIGIDPDFSMLSEAGALDMMLQIVEAWPNDL--DEELTPLGAVSQV 167

Query: 196 LEISND 201
           L ++ +
Sbjct: 168 LHLAGE 173


>gi|103485553|ref|YP_615114.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
 gi|98975630|gb|ABF51781.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
          Length = 1112

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 43/182 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
             S++  A     +  + A  GSGKT  LV+R+  LL    A P+ +L LT +  AA E+
Sbjct: 191 DDSQEAAAGFADPALLLEAGPGSGKTRTLVKRIEHLLDFDEAVPNEILALTFSNKAAGEL 250

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + R+                                           +    + + T HA
Sbjct: 251 ADRIATARP--------------------------------------DAAADMWIGTFHA 272

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           F   +++++    ++ S+  + D+ Q+ +L+E      L  + L++  +L+     +++I
Sbjct: 273 FGLDLIRRYYELLDLPSNVQLIDKAQAIELLE----DQLPLMGLNHYHDLRNPDQGLVKI 328

Query: 199 SN 200
            +
Sbjct: 329 LS 330


>gi|325675756|ref|ZP_08155440.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
 gi|325553727|gb|EGD23405.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
          Length = 1125

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 25/237 (10%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +E +     T  +  +   P     V A AG+GKT  +  RV+ L+      P  +L 
Sbjct: 14  ELAEALGQFPPTPEQAAVIEAPLGPTLVVAGAGAGKTETMAARVVWLVANGLVDPEQVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA +++ R+ + +   +                      D+  +  L   IL +
Sbjct: 74  LTFTRKAAQQLTARIRKRLAKLAG----------------SALVRDLDPSGSLRSRILAS 117

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                V T HA+   ++ +  L   I     +  E +  +L      +    +  D N  
Sbjct: 118 EPE--VSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQLAYRVVSAWDDDLDTDRNPA 175

Query: 188 LKKAFYEILEISNDEDIETLIS--DIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241
              +  E +   + +  E L+   D+    T L KLI    +   +R    K+L  +
Sbjct: 176 ---SITESVLALSGQLAEHLVEPADLREAHTELDKLIHTLPAGPKQRGGPSKTLLDL 229


>gi|50311391|ref|XP_455720.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644856|emb|CAG98428.1| KLLA0F14256p [Kluyveromyces lactis]
          Length = 966

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 39/167 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           E  + +++   ++   +        V A  G+GKT +L  R   L++  N HP  ++  T
Sbjct: 3   ELTNGLNE--RQRQAVTHREDDVLQVLAGPGTGKTKVLTARFAYLVIEKNIHPLRIIMTT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA E+  R+  I++                                       +  
Sbjct: 61  FTRKAANEIKERLQPILSQAGI-----------------------------------SSN 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           GL + T H+ C  +++Q      I  +++IA  E    +++   + T
Sbjct: 86  GLLIGTFHSICARLLRQAGHLIGIPKNWSIAKTEDINTILKTLLEDT 132


>gi|156972811|ref|YP_001443718.1| ATP-dependent DNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156524405|gb|ABU69491.1| hypothetical protein VIBHAR_00483 [Vibrio harveyi ATCC BAA-1116]
          Length = 671

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKAESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E  +  L      + + L++    I
Sbjct: 84  FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLLSCI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|156744107|ref|YP_001434236.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156235435|gb|ABU60218.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 1180

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 34/184 (18%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              EQ  A D      ++A  G+GKT  +V + + L+     P+++L LT +  AA EM 
Sbjct: 200 LDQEQQAAVDAPLPLLLAAGPGTGKTRSIVAKYVSLVRQGVDPASILALTFSNRAAEEMR 259

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R++  +                                          G +++ T H++
Sbjct: 260 ERIVAALR----------------------------------HEAPRLVGRIEISTFHSW 285

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              +++ +     +     + D      L+ +       +   D  E  +     I  IS
Sbjct: 286 GLNVLRIYGARLGLPVDARLLDTADLFILLSKRLNDLRLAYFKDVREPTRHLLTIIQAIS 345

Query: 200 NDED 203
             +D
Sbjct: 346 RIKD 349


>gi|229527316|ref|ZP_04416709.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 12129(1)]
 gi|229335324|gb|EEO00808.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 12129(1)]
          Length = 671

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|239993134|ref|ZP_04713658.1| UvrD/REP helicase [Alteromonas macleodii ATCC 27126]
          Length = 701

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 28/154 (18%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           E  L+ +      + A AG+GKT+ L  +  +L+L    P  +L +T  + A++E+S R 
Sbjct: 26  ETELSDETHHPLLIIAGAGTGKTNTLAHKTAQLILHGVAPERILLMTFARRASSELSSRA 85

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             II                        ++   K +      L       + T H+    
Sbjct: 86  NRII-----------------------ERTLREKQKAYHPVTLP-----WMGTFHSIASR 117

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           ++++      +   F + D   S  +++  +   
Sbjct: 118 LLREHASLIGLDPDFTVMDRNDSADMLDLLRHEL 151


>gi|261493211|ref|ZP_05989738.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261311061|gb|EEY12237.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 672

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q        +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVDHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE+    L+    K  L   + ++ + LK     I
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEQDQIALL----KHLLPENVTEDKDLLKALIATI 139

Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232
               ND    E +++ +   R  +    F+  Y  + K
Sbjct: 140 SNWKNDLLSPERVLTRVRDERERV-FSHFYQLYQNQLK 176


>gi|254491825|ref|ZP_05105004.1| exodeoxyribonuclease V, beta subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463303|gb|EEF79573.1| exodeoxyribonuclease V, beta subunit [Methylophaga thiooxydans
           DMS010]
          Length = 1164

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 17/159 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L +   RL+         +L +T+T+AA  E+  R+ + +       
Sbjct: 16  LIEASAGTGKTFTLAELYCRLITEQQLEVKNILVVTYTRAATEELRGRLRKRL------- 68

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                  + + Q      +   K    L   +++     + TIH FC+  +Q F  E+  
Sbjct: 69  -------VEERQKLSQLDAVDDKVIKRLKLAIQSFDEAAIFTIHGFCQRALQDFAFESGH 121

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
              F +      +++ +          +   +    +  
Sbjct: 122 A--FDVEMVTDEEEIKQAVVDDFWRRHVSAADANFARFL 158


>gi|219848623|ref|YP_002463056.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
 gi|219542882|gb|ACL24620.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
          Length = 646

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 41/164 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L     +++   + P     V A AGSGKT +L  R+  L+      PS +L +T T  A
Sbjct: 4   LNHLNPAQRAAVTAPIGPVLVKAGAGSGKTRVLTLRIAYLITHYGVSPSQILAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++ +                                         GL   
Sbjct: 64  AREMRERLRGLLGSRIR--------------------------------------GLTSG 85

Query: 135 TIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA C  I+++         T+ F+I   ++  +L  EA    
Sbjct: 86  TFHAICTRILRESIEGRLKGYTASFSIYAGDEQLQLAAEALAGV 129


>gi|312140617|ref|YP_004007953.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311889956|emb|CBH49273.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus
           equi 103S]
          Length = 1116

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 25/237 (10%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +E +     T  +  +   P     V A AG+GKT  +  RV+ L+      P  +L 
Sbjct: 5   ELAEALGQFPPTPEQAAVIEAPLGPTLVVAGAGAGKTETMAARVVWLVANGLVDPEQVLG 64

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA +++ R+ + +   +                      D+  +  L   IL +
Sbjct: 65  LTFTRKAAQQLTARIRKRLAKLAG----------------SALVRDLDPSGSLRSRILAS 108

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                V T HA+   ++ +  L   I     +  E +  +L      +    +  D N  
Sbjct: 109 EPE--VSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQLAYRVVSAWDDDLDTDRNPA 166

Query: 188 LKKAFYEILEISNDEDIETLIS--DIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241
              +  E +   + +  E L+   D+    T L KLI    +   +R    K+L  +
Sbjct: 167 ---SITESVLALSGQLAEHLVEPADLREAHTELDKLIHTLPAGPKQRGGPSKTLLDL 220


>gi|329943325|ref|ZP_08292099.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10]
 gi|313848473|emb|CBY17477.1| DNA helicase II, UvrD [Chlamydophila psittaci RD1]
 gi|325507016|gb|ADZ18654.1| ATP-dependent DNA helicase [Chlamydophila psittaci 6BC]
 gi|328814872|gb|EGF84862.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10]
 gi|328915165|gb|AEB55998.1| ATP-dependent helicase PcrA [Chlamydophila psittaci 6BC]
          Length = 637

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 37/162 (22%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L S+    Q+ A + P     V A AG+GKT ++  R+L L+     P  +L +T T  A
Sbjct: 2   LTSELNEAQVAAVTSPLSPILVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+L +          +                                    V 
Sbjct: 62  AKELKERILHLCPQAHGSDIPM------------------------------------VC 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I+++     N  ++F I D+  + KL+++  +  
Sbjct: 86  TFHSLGVFILRRSIQALNRENNFIIYDQSDTDKLLKQCLQKF 127


>gi|307719793|ref|YP_003875325.1| DNA helicase [Spirochaeta thermophila DSM 6192]
 gi|306533518|gb|ADN03052.1| DNA helicase [Spirochaeta thermophila DSM 6192]
          Length = 683

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 52/222 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  +    +EQ  A         + A AGSGKT ++  ++  L+ A      ++L +T T
Sbjct: 4   LSYLETLNAEQREAVFHSGSPLLILAGAGSGKTRVITTKIAYLVDALGIPARSILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R L++                                            G+
Sbjct: 64  NKAAREMYERALQLSPRTE---------------------------------------GV 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            ++T H+F   +++ +     +   FAI D+E ++ L        L+SI+  +       
Sbjct: 85  MIKTFHSFGAWLLRLYGERLGLARDFAIYDDEDARAL--------LSSILEGSQRRHLSR 136

Query: 192 FYEILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRR 231
           +   +  + D  +  E  +S I+ +      ++  +    R 
Sbjct: 137 YAWAISRAKDYALGPEDDLSSILED-DDFPELYARYEDRLRD 177


>gi|163802370|ref|ZP_02196264.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4]
 gi|159173899|gb|EDP58713.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4]
          Length = 1212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 14/145 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGTTDTKHRVPLTVDQILVVTFTEAATAELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S +   IQ       D  +A  +L+          V TIH FC+ ++
Sbjct: 82  RIHDARIAFSRGQSLDPV-IQPLLVEIDDHKQATEILLQAERQMDEAAVYTIHGFCQRML 140

Query: 145 QQFPLEAN--ITSHFAIADEEQSKK 167
            Q   E+     + F + DE   K 
Sbjct: 141 TQNAFESGSRFDNEF-VTDESHLKA 164


>gi|167034115|ref|YP_001669346.1| UvrD/REP helicase [Pseudomonas putida GB-1]
 gi|166860603|gb|ABY99010.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 1061

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 39/201 (19%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQR-VLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           SD  R  ++SA AGSGKT+ L +     L      P  ++  T T+ AAAE+  RV   +
Sbjct: 2   SDNPRITFISAGAGSGKTYRLTELLYQELTSQQVQPEGIIATTFTRKAAAELRERVRSHL 61

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                +                               +    G  ++ T+++ C  +++ 
Sbjct: 62  LDKGQVG------------------------------LASAMGQARIGTVNSLCGQLLEH 91

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF--------YEILEI 198
           F  EA +     + +EEQ+K L+ +A  S L    ++    + +           ++   
Sbjct: 92  FAFEAGMPPQQRVLEEEQAKVLLNQAVDSVLDGTRMEAFLAISRRLGLEVTLQQSDLPSD 151

Query: 199 SNDEDIETLISDIISNRTALK 219
           S  + +  L+  + SN   L+
Sbjct: 152 SWQDALRRLLDQLRSNDIDLE 172


>gi|254230496|ref|ZP_04923870.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25]
 gi|262392752|ref|YP_003284606.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25]
 gi|151936985|gb|EDN55869.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25]
 gi|262336346|gb|ACY50141.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25]
          Length = 671

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    S+       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPSQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKAESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +   ++
Sbjct: 84  FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLR---QL 135

Query: 196 LEISNDEDIETLISDIISNRTA--LKLIFFFFSYLWRRKIIEKSLWSI 241
           L   ++   + L  +    R     + +F F   ++++++   +    
Sbjct: 136 LSCISNWKNDMLTPEQAKARAQGEQQQLFAFCFDMYQKQMKAYNALDF 183


>gi|229524876|ref|ZP_04414281.1| ATP-dependent DNA helicase Rep [Vibrio cholerae bv. albensis VL426]
 gi|229338457|gb|EEO03474.1| ATP-dependent DNA helicase Rep [Vibrio cholerae bv. albensis VL426]
          Length = 671

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|229149252|ref|ZP_04277491.1| UvrD/REP helicase [Bacillus cereus m1550]
 gi|228634224|gb|EEK90814.1| UvrD/REP helicase [Bacillus cereus m1550]
          Length = 957

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 34/158 (21%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80
            ++           + A  GSGKT+ LV+R+L L+      P  +L  T T+ AA E+  
Sbjct: 10  QQKKAVETTEGPLLIIAGPGSGKTYTLVERILYLIEHKQVEPENILVATFTEKAANELVT 69

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+   +                                     I      + V TIH+ C
Sbjct: 70  RISNKLHE---------------------------------ANIKFNLNEMYVGTIHSLC 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
             I+++      +  ++ + D+   + ++ +     L 
Sbjct: 97  LRILEENREYTRLKKNYILMDQFDQQYMLYQKLSRFLE 134


>gi|315445540|ref|YP_004078419.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263843|gb|ADU00585.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 1091

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E S  + L   T+ +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 10  ELSRALGLFEPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYATPGEVLG 69

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   +     I +A                            
Sbjct: 70  LTFTRKAAGQLLRRVRSRLARLAGAGLTIPAAG-----------------------ADLA 106

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
              + + T HAF   ++++F L   +     +  E +  +L
Sbjct: 107 DDPVTIGTYHAFAGTLLREFGLMLPVEPDTRLLGETELWQL 147


>gi|255004091|ref|ZP_05278892.1| DNA helicase II (uvrD) [Anaplasma marginale str. Virginia]
          Length = 661

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           + E   L+S  + ++           + A AG+GKT  +  R+  ++    A PS +L +
Sbjct: 18  NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 77

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV EI+                                          
Sbjct: 78  TFTNKAAREMLVRVSEIVDTT--------------------------------------- 98

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            G+ + T HA    I++       +   F +   +   +LI+     T
Sbjct: 99  -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 145


>gi|229521119|ref|ZP_04410540.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TM 11079-80]
 gi|229342004|gb|EEO07005.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TM 11079-80]
          Length = 671

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|183981382|ref|YP_001849673.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
 gi|183174708|gb|ACC39818.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
          Length = 1101

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 27/170 (15%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S  E +  + +   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  
Sbjct: 6   SPDEIASALGIFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQ 65

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA ++  RV   +   +                             + + +
Sbjct: 66  VLGLTFTRKAAGQLLRRVRSRLARLAGT--------------------------TVGVAV 99

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            E  G   V T HAF  ++++   L   I     +  E +  +L  E   
Sbjct: 100 GEAAGAPTVSTYHAFAGSLLRDHGLLLPIEPDTRLLSETELWQLAFEVVN 149


>gi|302818017|ref|XP_002990683.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii]
 gi|300141605|gb|EFJ08315.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii]
          Length = 1291

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 38/174 (21%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           S  +    +  ++ ++ +  L S   +   + A  GSGKT  +V R+L LL        +
Sbjct: 242 SAADMPTYLRKLNVSQRDAAL-SSIGKPLLIVAGPGSGKTSTMVARILTLLNEGVDSKNI 300

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T AAA EM  RV  ++                                       
Sbjct: 301 LGMTFTTAAATEMMDRVAAVVGK------------------------------------- 323

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           E    L + T H+FC  + +    + N TS F +    Q +K + EA +  L +
Sbjct: 324 EASKELMISTFHSFCLQLCRSHAEKLNRTSEFLVYGASQQRKAVIEATRLALEA 377


>gi|170717649|ref|YP_001784727.1| exodeoxyribonuclease V subunit beta [Haemophilus somnus 2336]
 gi|168825778|gb|ACA31149.1| exodeoxyribonuclease V, beta subunit [Haemophilus somnus 2336]
          Length = 1216

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 16/159 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKTH +V   +RLLL               +L +T+T+ A  E+  R+ E I
Sbjct: 35  LIEASAGTGKTHSIVSLYIRLLLQAGENNFSQALEVDQILVVTYTEMATQELKQRIRERI 94

Query: 87  TAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                   +          E   +Q   P   D+  A + L           V TIH+FC
Sbjct: 95  YQTKQALIQYQQHQNKTLLEDQFLQELLPYIKDIDLAVYRLTLAERNLDISAVSTIHSFC 154

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
             ++ Q+   + +  +  +  +E   +LI+         
Sbjct: 155 RRVLMQYAFNSGVHFNMELVSDE--SELIQRLANELWRE 191


>gi|90581490|ref|ZP_01237284.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
 gi|90437351|gb|EAS62548.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
          Length = 671

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+   +     +  LT T  AA
Sbjct: 1   MKLNPRQTEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARNIAALTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGRQESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E  +  L      + + LK+    I
Sbjct: 84  FHTLGLNIIRREYKHLGLKASFSLFDDQDQMALLKELTEDELE----GDKDLLKQLMSSI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|294341371|emb|CAZ89788.1| putative exodeoxyribonuclease V, beta subunit recB [Thiomonas sp.
           3As]
          Length = 1202

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 17/164 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T+AA  E++ 
Sbjct: 16  QGSRLIEASAGTGKTWTIAALYLRLVLGHGTEATAFARPLSPEQILVMTFTRAATRELAE 75

Query: 81  RVLEIITAWSHLSDEILSAE-----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           R+   +   +      L+ +     + ++    P  S    A   L    +      V T
Sbjct: 76  RIRARLVEAAQCFQGALAPKVDDEFLLRLLDSYPPGSARQTAAWRLAMAAQEMDDAAVFT 135

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           I A+C+ ++++   ++  +    +       +L  +A       
Sbjct: 136 IDAWCQRMLREHAFDSGHSFDEDLL--ADEGELTTQAVHDFWRQ 177


>gi|297581602|ref|ZP_06943524.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC385]
 gi|297534009|gb|EFH72848.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC385]
          Length = 671

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|146301512|ref|YP_001196103.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
 gi|146155930|gb|ABQ06784.1| ATP-dependent DNA helicase, Rep family [Flavobacterium johnsoniae
           UW101]
          Length = 787

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +   S+            V A AGSGKT  L  R   ++     + S +LC+T T  A
Sbjct: 6   LENLNPSQLQAVKTTEGYVRVIAGAGSGKTKALTSRFAYIVDRLGINSSNILCVTFTNKA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  +I                                       +T     + 
Sbjct: 66  AQEMKKRVKALIG--------------------------------------DTYDLAFIT 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H FC   +++   + +   +F I D E  K ++ +     
Sbjct: 88  TYHGFCVRFLREEINKIHFPKNFIILDAEDQKSILRDIFNEL 129


>gi|255002962|ref|ZP_05277926.1| DNA helicase II [Anaplasma marginale str. Puerto Rico]
 gi|269958969|ref|YP_003328758.1| DNA helicase 2 [Anaplasma centrale str. Israel]
 gi|269848800|gb|ACZ49444.1| DNA helicase 2 [Anaplasma centrale str. Israel]
          Length = 661

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           + E   L+S  + ++           + A AG+GKT  +  R+  ++    A PS +L +
Sbjct: 18  NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 77

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV EI+                                          
Sbjct: 78  TFTNKAAREMLVRVSEIVDTT--------------------------------------- 98

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            G+ + T HA    I++       +   F +   +   +LI+     T
Sbjct: 99  -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 145


>gi|307256307|ref|ZP_07538090.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306865133|gb|EFM97033.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 672

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L+    K  L     ++ + LK     I
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLALL----KHLLPENAAEDKDLLKALISTI 139

Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232
               ND    ET+++ +   R  +    F+  Y  + K
Sbjct: 140 SNWKNDLLSPETVLTRVRDERERV-FSHFYRLYQNQLK 176


>gi|255067137|ref|ZP_05318992.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256]
 gi|255048505|gb|EET43969.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256]
          Length = 666

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 38/174 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q           V A AGSGKT ++ Q++  L++     P T+  +T T  AA
Sbjct: 1   MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                           GL + T
Sbjct: 61  TEMQERVAKMLPK-------------------------------------SQTRGLTICT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            H+    I+++         +F+I D   S K+I E    T    +     ++ 
Sbjct: 84  FHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGGTGKEALFKAQHQIS 137


>gi|153824049|ref|ZP_01976716.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
 gi|126518428|gb|EAZ75651.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
          Length = 607

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|29840740|ref|NP_829846.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC]
 gi|29835090|gb|AAP05724.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC]
          Length = 637

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 37/162 (22%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L S+    Q+ A + P     V A AG+GKT ++  R+L L+     P  +L +T T  A
Sbjct: 2   LTSELNEAQIAAVTSPLSPTLVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+L            +                                    V 
Sbjct: 62  AKELKERILHQCPQAHGSDVPM------------------------------------VC 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I+++     N  ++F I D+  + KL+++  +  
Sbjct: 86  TFHSLGVFILRRSIHALNRENNFIIYDQSDTDKLLKQCLQKF 127


>gi|319638182|ref|ZP_07992945.1| ATP-dependent DNA helicase [Neisseria mucosa C102]
 gi|317400455|gb|EFV81113.1| ATP-dependent DNA helicase [Neisseria mucosa C102]
          Length = 666

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 38/158 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q           V A AGSGKT ++ Q++  L++     P T+  +T T  AA
Sbjct: 1   MKLNPQQQAAVQYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                           GL + T
Sbjct: 61  TEMQERVAKMLPK-------------------------------------SQMRGLTICT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            H+    I+++         +F+I D   S K+I E  
Sbjct: 84  FHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 121


>gi|262037611|ref|ZP_06011062.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264]
 gi|261748356|gb|EEY35744.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264]
          Length = 1055

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 11/191 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT--AWSHL 92
            + A+AG+GKT+ L    +  L+       ++ +T TK A AE+  R+ + +   A+   
Sbjct: 5   ILKASAGTGKTYRLSLEYIANLIKGISYKNIIVMTFTKKATAEIKDRIYDFLYQIAFEKY 64

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEA 151
             E L   + +I G +  + D +  +++   +++    +++ TI  F   I +       
Sbjct: 65  KFEELEKSLKEIYGFQGGEIDKNSLQNIYFEMIKNKDEIRIYTIDGFTNQIFKNTIAPFF 124

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFYEILEISNDEDIETLIS 209
            I   +   DEE      +   +  L  I+ +N   E+    F E  E  + +     I 
Sbjct: 125 GI-YGYETLDEED-----DGFYEDILVKILNNNEYFEKFSFVFEEKKERKDIKKYVKFIK 178

Query: 210 DIISNRTALKL 220
           +II+ R    L
Sbjct: 179 NIINIRKDFIL 189


>gi|256396908|ref|YP_003118472.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363134|gb|ACU76631.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 1124

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 24/167 (14%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E  + +  +  T+ +    + P   A + A AGSGKT ++  RV+ L+      P  +L 
Sbjct: 6   EDLKALLGVPYTEEQLEAITAPLEPAVIVAGAGSGKTTVMAARVVWLVGTGQVGPHEVLG 65

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  AAAE++ R+ + +        +   +++T+  G+                    
Sbjct: 66  LTFTNKAAAELAERIRKALRKLEDEELDDPDSDLTESVGEP------------------- 106

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
                V T HA+ + ++++  L   +     +  +    +L   A +
Sbjct: 107 ----TVSTYHAYADRLIKEHGLRLGLEPSARLLADATRYQLAVTAVR 149


>gi|145225243|ref|YP_001135921.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217729|gb|ABP47133.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
          Length = 1091

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E S  + L   T+ +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 10  ELSRALGLFEPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYATPGEVLG 69

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   +     I +A                            
Sbjct: 70  LTFTRKAAGQLLRRVRSRLARLAGAGLTIPAAG-----------------------ADLA 106

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
              + + T HAF   ++++F L   +     +  E +  +L
Sbjct: 107 DDPVTIGTYHAFAGTLLREFGLMLPVEPDTRLLGETELWQL 147


>gi|15640197|ref|NP_229824.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587549|ref|ZP_01677315.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 2740-80]
 gi|147674491|ref|YP_001218439.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
 gi|227080400|ref|YP_002808951.1| ATP-dependent DNA helicase Rep [Vibrio cholerae M66-2]
 gi|229507018|ref|ZP_04396526.1| ATP-dependent DNA helicase Rep [Vibrio cholerae BX 330286]
 gi|229509395|ref|ZP_04398878.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
 gi|229516342|ref|ZP_04405790.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC9]
 gi|229606533|ref|YP_002877181.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MJ-1236]
 gi|254851295|ref|ZP_05240645.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MO10]
 gi|255743986|ref|ZP_05417940.1| ATP-dependent DNA helicase Rep [Vibrio cholera CIRS 101]
 gi|298501306|ref|ZP_07011102.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MAK 757]
 gi|9654570|gb|AAF93343.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548187|gb|EAX58257.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 2740-80]
 gi|146316374|gb|ABQ20913.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
 gi|227008288|gb|ACP04500.1| ATP-dependent DNA helicase Rep [Vibrio cholerae M66-2]
 gi|227012025|gb|ACP08235.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
 gi|229346768|gb|EEO11738.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC9]
 gi|229353710|gb|EEO18647.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
 gi|229356123|gb|EEO21042.1| ATP-dependent DNA helicase Rep [Vibrio cholerae BX 330286]
 gi|229369188|gb|ACQ59611.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MJ-1236]
 gi|254847000|gb|EET25414.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MO10]
 gi|255738251|gb|EET93642.1| ATP-dependent DNA helicase Rep [Vibrio cholera CIRS 101]
 gi|297539966|gb|EFH76031.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MAK 757]
          Length = 671

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|261213209|ref|ZP_05927492.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC341]
 gi|260837627|gb|EEX64321.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC341]
          Length = 671

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQSLGKAESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|222474985|ref|YP_002563400.1| DNA helicase II (uvrD) [Anaplasma marginale str. Florida]
 gi|222419121|gb|ACM49144.1| DNA helicase II (uvrD) [Anaplasma marginale str. Florida]
          Length = 671

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           + E   L+S  + ++           + A AG+GKT  +  R+  ++    A PS +L +
Sbjct: 28  NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 87

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV EI+                                          
Sbjct: 88  TFTNKAAREMLVRVSEIVDTT--------------------------------------- 108

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            G+ + T HA    I++       +   F +   +   +LI+     T
Sbjct: 109 -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 155


>gi|145596260|ref|YP_001160557.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305597|gb|ABP56179.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 1144

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 23/167 (13%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E ++ + L + T+ +  + + P     V A AGSGKT  +  RV+ L+  +   P  +L 
Sbjct: 27  ELAKLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVVWLVANSYVQPEQVLG 86

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA E++HRV   +              +      +P                  
Sbjct: 87  LTFTRKAAGELAHRVRTRLGQLVRRLGRNGRHPLDDPLSGEP------------------ 128

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
                V T H++   ++ +  L A       +  E    +L++   +
Sbjct: 129 ----TVATYHSYAGRVVTEHGLRAGYEPATRLLTEASRWQLVDLIVR 171


>gi|291613986|ref|YP_003524143.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
 gi|291584098|gb|ADE11756.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
          Length = 662

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 40/158 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++ T+ E +          V A AGSGKT ++  ++  L+      P  +  +T T  AA
Sbjct: 5   LNPTQREAIKYL--GGPLLVLAGAGSGKTRVITHKLAYLIEECGYSPRNIAAITFTNKAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +I+                                           G+ + T
Sbjct: 63  NEMRERVGKIMNG-------------------------------------RDAKGMTIST 85

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            HA    I+++          F+I D   + K+I E  
Sbjct: 86  FHALGMQILREDGPLLGYKKQFSIFDSADTGKIISELL 123


>gi|251771257|gb|EES51838.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum]
          Length = 647

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 57/176 (32%), Gaps = 42/176 (23%)

Query: 17  ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S    EQ      P   A V A AGSGKT +L  R   LL        +L LT TK A+
Sbjct: 6   LSDLNEEQAPAVLAPDGPALVLAGAGSGKTRVLTYRAAHLLSRGVPAPRILLLTFTKKAS 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             M  R+  ++     +                                          T
Sbjct: 66  RVMQERLTGLMGPTFFIP--------------------------------------WAGT 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            H     ++++F     +     + D E  + L++E + +    +  D  EEL  A
Sbjct: 88  FHHVGYRLIREFGHRIGVEGGRTLLDREDQRDLVKEIRDAV---VGEDPGEELPPA 140


>gi|226939251|ref|YP_002794322.1| Rep [Laribacter hongkongensis HLHK9]
 gi|226714175|gb|ACO73313.1| Rep [Laribacter hongkongensis HLHK9]
          Length = 674

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 38/164 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
           + L      ++           V A AGSGKT ++ Q++  L+         +  +T T 
Sbjct: 1   MSLAQLNPPQRAAIRYLDGPLLVLAGAGSGKTRVITQKIAYLIREGGFSARNIAAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV ++++A                                     +   GL 
Sbjct: 61  KAAREMLERVGKLLSA-------------------------------------DELRGLT 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           V T H+    +++Q          F+I D   + K+I +   +T
Sbjct: 84  VSTFHSLGLMMLRQEAQHVGYKPRFSILDSADATKIIADILHTT 127


>gi|94263170|ref|ZP_01286988.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
 gi|93456541|gb|EAT06655.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
          Length = 1239

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 8/172 (4%)

Query: 27  ASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE 84
           A+ P      + A+AG+GKT  +    LR +L    P   +L L+ T+AA AE+  R+  
Sbjct: 9   ATLPAAPVQLIEASAGTGKTWSITALYLRFILERQLPVEKILVLSFTEAATAELHERLRA 68

Query: 85  IITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            +          L+ E       +     +  + ++ + LL   L +     V TIH FC
Sbjct: 69  RLQGAVDAYQRFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALASIDQAAVLTIHGFC 128

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             ++QQ   E+ +   F +    +     ++     L ++   ++  L    
Sbjct: 129 HRMLQQGAFESGMP--FELELLAELDHYFQQLIHDYLNTVFHRDDPRLLSLL 178


>gi|56476966|ref|YP_158555.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1]
 gi|56313009|emb|CAI07654.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1]
          Length = 1229

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 11/187 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +    LRLL+        +L +T T+AA AE+  RV E I       
Sbjct: 26  LIEASAGTGKTWNICGLFLRLLVERELAVDAILVVTFTRAATAELKSRVRERIAGTLAYL 85

Query: 94  DEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           D   +         +   +      ++ R  L   L+T     + TIH +C+  +   P 
Sbjct: 86  DGTAADGDPFVAQLVAALESQAIARAQIRERLDLALQTFDEAAIFTIHGYCQRALADTPF 145

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISNDEDIETL 207
            A +   FA+   E   +L  EA +      +  +    EL +    I    + E   TL
Sbjct: 146 AAALP--FALELTEDDLELRLEAARDFWRREIASDACAAELGELL--IARGDSPERWATL 201

Query: 208 ISDIISN 214
           +   ++ 
Sbjct: 202 LGRYLAR 208


>gi|56416619|ref|YP_153693.1| DNA helicase II [Anaplasma marginale str. St. Maries]
 gi|56387851|gb|AAV86438.1| DNA helicase II [Anaplasma marginale str. St. Maries]
          Length = 671

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           + E   L+S  + ++           + A AG+GKT  +  R+  ++    A PS +L +
Sbjct: 28  NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 87

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV EI+                                          
Sbjct: 88  TFTNKAAREMLVRVSEIVDTT--------------------------------------- 108

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            G+ + T HA    I++       +   F +   +   +LI+     T
Sbjct: 109 -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 155


>gi|123440560|ref|YP_001004554.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087521|emb|CAL10302.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 674

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 38/161 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               I+++      + S+F++ D +    L+++     L  
Sbjct: 87  LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLED 127


>gi|229175134|ref|ZP_04302650.1| UvrD/REP helicase [Bacillus cereus MM3]
 gi|228608270|gb|EEK65576.1| UvrD/REP helicase [Bacillus cereus MM3]
          Length = 957

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 47/231 (20%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80
            ++           + A  GSGKT+ LV+R+L L+      P  +L  T T+ AA E+  
Sbjct: 10  QQKKAVETTEGPLLIIAGPGSGKTYTLVERILYLIEHRQVEPENILVATFTEKAANELVT 69

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+   +                                     I      + V TIH+ C
Sbjct: 70  RISNKLHE---------------------------------ANIKFNLNEMYVGTIHSLC 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA----SIMLDNNEELKKAFYEIL 196
             I+++      +  ++ + D+   + ++ +     L       +L+ N    K   E+L
Sbjct: 97  LRILEENREYTRLKKNYILMDQFDQQYMLYQKLSRFLELDEIESLLNFNTSRWKQSQELL 156

Query: 197 EISNDE-----DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           +  N       DI  LI    +  + L   +  +  L    +IE++    +
Sbjct: 157 KWINKLSEEIVDINKLIESDEARLSVLGKCYKVYEQL----LIEENALDFS 203


>gi|254776585|ref|ZP_05218101.1| hypothetical protein MaviaA2_18221 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 1139

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 22/164 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S +E +  + L   T+ +  + + P     V A AG+GKT  +  RV+ L+    AHP  
Sbjct: 49  SPRELACALALFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAHPGQ 108

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA ++  RV   +   + +    L A         P  + +          
Sbjct: 109 VLGLTFTRKAAGQLLRRVRSRLARLAGVG---LGAASPNHGAVDPEAAPV---------- 155

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                   V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 156 --------VSTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQL 191


>gi|289522440|ref|ZP_06439294.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504276|gb|EFD25440.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 662

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 61/166 (36%), Gaps = 43/166 (25%)

Query: 16  LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+SQ    Q  A   T+    V A AGSGKT +L  +   L+ +  A P  +L +T T  
Sbjct: 6   LLSQLNPRQREAVLYTKGPLLVLAGAGSGKTRVLTYKFAYLVASGLAQPWQILAVTFTNK 65

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++ +                                          L +
Sbjct: 66  AAREMKERVWALLGS--------------------------------------DINNLHI 87

Query: 134 QTIHAFCEAIMQQFPL---EANITSHFAIADEEQSKKLIEEAKKST 176
            T H++    + ++     EA I   F++ D   S+KL+E   K  
Sbjct: 88  STFHSYGVEFLYRYTKEVGEAGIRVPFSVFDRGDSQKLVERLMKDF 133


>gi|310766108|gb|ADP11058.1| ATP-dependent DNA helicase Rep [Erwinia sp. Ejp617]
          Length = 673

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAYLIRECGYQARHIAAVTFTNKASREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++      + S+F++ D++    L+++  +  L     ++   L++    I    ND
Sbjct: 90  EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEQWLE----NDKNLLQQLISTISNWKND 145

Query: 202 E-DIETLISDIISNRTAL 218
             D     +  +S R  L
Sbjct: 146 LMDPPRAAAGALSERDKL 163


>gi|153948778|ref|YP_001399172.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
           31758]
 gi|152960273|gb|ABS47734.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
           31758]
          Length = 673

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKYIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I+++  +   + S+F++ D +    L+++     L     D+   L++    I   
Sbjct: 87  LGLEIIKKEYVALGMKSNFSLFDAQDQMGLLKDLTHKWLE----DDKTLLQQLVSAISNW 142

Query: 199 SND 201
            ND
Sbjct: 143 KND 145


>gi|91228869|ref|ZP_01262773.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 12G01]
 gi|269965552|ref|ZP_06179667.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 40B]
 gi|91187581|gb|EAS73909.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 12G01]
 gi|269829831|gb|EEZ84065.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 40B]
          Length = 671

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    S+       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPSQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKGESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +   ++
Sbjct: 84  FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLR---QL 135

Query: 196 LEISNDEDIETLISDIISNRTA--LKLIFFFFSYLWRRKIIEKSLWSI 241
           L   ++   + L  +    R     + +F F   ++++++   +    
Sbjct: 136 LSCISNWKNDMLTPEQAKARAQGEQQQLFAFCFDMYQKQMKAYNALDF 183


>gi|332178959|gb|AEE14648.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796]
          Length = 1040

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            VSA+AGSGKT+ L  R  + LL     N + S ++ LT TK AA EM  R+LE +   S
Sbjct: 24  LVSASAGSGKTYTLCMRFCQFLLSKCIQNNNLSNIIALTFTKNAANEMKQRILEWLKRIS 83

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                             P    ++++  L+  I       +V TI +F   I +    E
Sbjct: 84  LGLLSEDDKNNLIELLSLPFNEIVTRSEKLIDLIFNNFYEFQVSTIDSFMSKIFKVMAFE 143

Query: 151 ANI 153
            NI
Sbjct: 144 TNI 146


>gi|317056307|ref|YP_004104774.1| UvrD/REP helicase [Ruminococcus albus 7]
 gi|315448576|gb|ADU22140.1| UvrD/REP helicase [Ruminococcus albus 7]
          Length = 780

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 78/197 (39%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL----------------------- 56
              +Q           + A AGSGKT +LV R+  ++                       
Sbjct: 20  NPMQQKAVFRVNGPLLILAGAGSGKTTVLVNRIANMIHFGDAYNTTGQIFTDEEAAFIKD 79

Query: 57  -----------------LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
                            +    P  +L +T T  AA E+  R+ +I+             
Sbjct: 80  YAEGRTDDGKRLAAVIGVRQVRPWNILAITFTNKAAGELKERIEKILGDEGRGIVAA--- 136

Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159
                                              T H+ C  I+++       T  FAI
Sbjct: 137 -----------------------------------TFHSACVRILRRECGNIGFTPSFAI 161

Query: 160 ADEEQSKKLIEEAKKST 176
            D + SK++I+ A +S 
Sbjct: 162 YDTDDSKRVIKAAMRSL 178


>gi|302558544|ref|ZP_07310886.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000]
 gi|302476162|gb|EFL39255.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000]
          Length = 1072

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 26/161 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +    + P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 16  GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +        + +  +                           PG   + 
Sbjct: 76  AGELAERVRKALVRAGVTDPDAIDPD-------------------------NPPGEPVIS 110

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T HAF   ++    L   +     +  +    +L     + 
Sbjct: 111 TYHAFAGRLLTDHGLRVGLEPTSRLLADATRYQLAARVLRE 151


>gi|225075883|ref|ZP_03719082.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens
           NRL30031/H210]
 gi|224952829|gb|EEG34038.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens
           NRL30031/H210]
          Length = 666

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 38/158 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q           V A AGSGKT ++ Q++  L++     P T+  +T T  AA
Sbjct: 1   MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                           GL + T
Sbjct: 61  TEMQERVSKMLPK-------------------------------------SQTRGLTICT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            H+    I+++   +     +F+I D   S K+I E  
Sbjct: 84  FHSLGMKILREEANQIGYKKNFSILDSTDSAKIIGELL 121


>gi|256821245|ref|YP_003145208.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069]
 gi|256794784|gb|ACV25440.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069]
          Length = 674

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 40/161 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71
           ++  +++ + E LLA+       V A AGSGKT ++ ++++ L+     P   ++ +T T
Sbjct: 2   SLPQLNEKQREALLAT--QGPILVLAGAGSGKTSVITRKMVYLIKEKDIPARNIVAVTFT 59

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV ++  A +                                       GL
Sbjct: 60  NKAAREMKQRVSKLAGAKAT-------------------------------------QGL 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            V T H F    +++   +  + S+F I D++ S  LI++ 
Sbjct: 83  TVSTFHNFGLNFIRREYKKLRMKSNFTIFDDQDSLALIKDL 123


>gi|94265105|ref|ZP_01288871.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
 gi|93454435|gb|EAT04730.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
          Length = 1239

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 8/172 (4%)

Query: 27  ASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE 84
           A+ P      + A+AG+GKT  +    LR +L    P   +L L+ T+AA AE+  R+  
Sbjct: 9   ATLPAAPVQLIEASAGTGKTWSITALYLRFILERQLPVEKILVLSFTEAATAELHERLRA 68

Query: 85  IITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            +          L+ E       +     +  + ++ + LL   L +     V TIH FC
Sbjct: 69  RLQGAVDAYQRFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALASIDQAAVLTIHGFC 128

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             ++QQ   E+ +   F +    +     ++     L ++   ++  L    
Sbjct: 129 HRMLQQGAFESGMP--FELELLAELDHYFQQLIHDYLNTVFHRDDPRLLSLL 178


>gi|332159790|ref|YP_004296367.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664020|gb|ADZ40664.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 674

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 38/161 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                             +AR           GL + T H 
Sbjct: 64  KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               I+++      + S+F++ D +    L+++     L  
Sbjct: 87  LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLED 127


>gi|163737322|ref|ZP_02144740.1| UvrD/REP helicase domain protein [Phaeobacter gallaeciensis BS107]
 gi|161389926|gb|EDQ14277.1| UvrD/REP helicase domain protein [Phaeobacter gallaeciensis BS107]
          Length = 1138

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 41/191 (21%)

Query: 19  QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
               EQ  A++   +   + A  G+GKT  LV R+  L   +  P ++L LT +  AA E
Sbjct: 197 PLNEEQRHAAEHDGNALLLKAGPGTGKTQTLVGRLSVLKDRSVDPESILLLTFSNKAAGE 256

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R    + AW                                    E  G   + T H
Sbjct: 257 MTDR---AMLAWP-----------------------------------EAAGSAWIGTFH 278

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--NNEELKKAFYEI 195
           +F   ++++F   A + S   + D  ++  L+E+       +   D  +  +  ++    
Sbjct: 279 SFGLDLLRRFHDRAGLPSDPRLIDATEAIALLEDEFPRLRLTHFNDLWDPTDNLRSILSA 338

Query: 196 LEISNDEDIET 206
           +  + DE I+ 
Sbjct: 339 ISRAKDEVIDQ 349


>gi|325576766|ref|ZP_08147381.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
 gi|325160972|gb|EGC73090.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
          Length = 670

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      +    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIEHCGYLPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EKSKGLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQLALLKELTADVLQ----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|153833972|ref|ZP_01986639.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01]
 gi|148869710|gb|EDL68691.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01]
          Length = 1212

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 11/128 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+  R+  
Sbjct: 22  LIEASAGTGKTFTIAGLYLRLLLGHGTTDTKHRVPLTVDQILVVTFTEAATAELRDRIRA 81

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            I           S++   IQ          +A  +L+          V TIH FC+ ++
Sbjct: 82  RIHDARIAFARGQSSDPV-IQPLLEEIEAHKQAAEILLQAERQMDEAAVYTIHGFCQRML 140

Query: 145 QQFPLEAN 152
            Q   E+ 
Sbjct: 141 TQNAFESG 148


>gi|291563998|emb|CBL42814.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
           SS3/4]
          Length = 656

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 13/145 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   K++            V A  GSGKT ++  R+ RLL A   PS +L +T TKAAAA
Sbjct: 1   MDFNKAQMTALEHRDGPMMVLAGPGSGKTTVITHRIKRLLEAGVDPSGILVITFTKAAAA 60

Query: 77  EMSHRVLEIITAW------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-- 128
           EM  R L +          +   D+ L      +   + ++   ++AR        +   
Sbjct: 61  EMKERFLRLAREEDEKRRKAGKKDDHLPKNGWSLHRPEKSQQSAAEARQRAQGAGNSLEA 120

Query: 129 --GGLKVQTIHAFCEAIMQ---QFP 148
               +   T H+    I++   +FP
Sbjct: 121 AGSRVSFGTFHSVFYHILKWAYRFP 145


>gi|161613408|ref|YP_001587373.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362772|gb|ABX66540.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1127

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 45/238 (18%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           M+ H   Q   +    ++  + E +      ++  + A  G+GKT  LV RV  L     
Sbjct: 183 MVEHKPRQPEPDM--SLNDKQIEAVR--HRGKAFLLQAGPGTGKTRTLVARVESLFNDGI 238

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  +L LT +  AAAEMS R+                                      
Sbjct: 239 DPRRILLLTFSNKAAAEMSERIAR------------------------------------ 262

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                     L V T H F   ++++F    ++ +   + D  ++ + + E +   L  +
Sbjct: 263 --KQPHAAAALWVGTFHGFGLDLLRRFHDLCDLPAEPRLMDRSEAVE-LLEEEFLRLNLV 319

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
              N  +  +   +IL   +    E  ++D +  R   + +    S    R+  E++L
Sbjct: 320 HYRNLYDPSQNIVDILNAISRAKDE--VTDALQYRALAQEMLNSASSAEERETAERAL 375


>gi|153835500|ref|ZP_01988167.1| ATP-dependent DNA helicase Rep [Vibrio harveyi HY01]
 gi|148867939|gb|EDL67147.1| ATP-dependent DNA helicase Rep [Vibrio harveyi HY01]
          Length = 671

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 67/195 (34%), Gaps = 46/195 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKAESK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +   ++
Sbjct: 84  FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLR---QL 135

Query: 196 LEISNDEDIETLISD 210
           L   ++   + L S+
Sbjct: 136 LSCISNWKNDMLTSE 150


>gi|329914689|ref|ZP_08276145.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545085|gb|EGF30383.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 692

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++  +SE +   D      V A AGSGKT ++ Q++  L+      P  +  LT T  A
Sbjct: 18  GLNAPQSEAVHYLD--GPCLVLAGAGSGKTRVITQKIAHLIEDRGYEPKHIAALTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++                                            L V 
Sbjct: 76  ALEMQERIAKLLKQPRQAK------------------------------------QLTVS 99

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H+    I++Q   +  +   F+I D +    L+++  
Sbjct: 100 TFHSLGVKILRQEARQLGLKDRFSIMDSDDCFSLVQDLA 138


>gi|318060452|ref|ZP_07979175.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 1171

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 39/250 (15%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           M+ H +  + S+ +  I  T  +    + P     + A AGSGKT ++  RV+ L+    
Sbjct: 1   MLTHPA--QLSDLL-GIPFTPEQLACVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGT 57

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P  +L LT T  AAAE++ RV   +        +   A   +  G+            
Sbjct: 58  VAPEQVLGLTFTNKAAAELAERVRRSLVRAGISDPDAPPAPGAEPPGEPL---------- 107

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                        + T H+F   ++    L   +     +  +    +L     +     
Sbjct: 108 -------------ISTYHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLRE---- 150

Query: 180 IMLDNNEELKKAFYEILEI---SNDEDIETLISDIISNR---TALKLIFFFF-SYLWRRK 232
                   L + F +++      + E  E L+     +R     L+ +     S    RK
Sbjct: 151 -APGPYPALTRGFSDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAEARLSNDQLRK 209

Query: 233 IIEKSLWSIA 242
           + E +   +A
Sbjct: 210 VPEAAAARLA 219


>gi|241760514|ref|ZP_04758607.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114]
 gi|241319018|gb|EER55520.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114]
          Length = 666

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 38/158 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q           V A AGSGKT ++ Q++  L++     P T+  +T T  AA
Sbjct: 1   MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                           GL + T
Sbjct: 61  TEMQERVSKMLPKSQTR-------------------------------------GLTICT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            H+    I+++   +     +F+I D   S K+I E  
Sbjct: 84  FHSLGMKILREEANQIGYKKNFSILDSTDSAKIIGELL 121


>gi|240115748|ref|ZP_04729810.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
 gi|268601426|ref|ZP_06135593.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
 gi|268585557|gb|EEZ50233.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
          Length = 274

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A        +V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|269955587|ref|YP_003325376.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304268|gb|ACZ29818.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
          Length = 1192

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 24/222 (10%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S +E +  I     T  +  +   P     V A AGSGKT  +  RV+ L+      P  
Sbjct: 62  SAREIARLIGRHEPTDEQVAVIEAPLEPTLVVAGAGSGKTETMAARVVWLIANGLVEPEQ 121

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA E+  RV   +   +           +         +            
Sbjct: 122 VLGLTFTRKAAGELQTRVTSRLAQLARARTRAGHGPASAADAAIDLLA------------ 169

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                   + T +A+  +++    L   +     +  E    +L  +  +S    +  D 
Sbjct: 170 -----RPTIATYNAYAASLVTDHGLRLGVEPGSRLLGEANQWQLANQLVESWDEDLGTDR 224

Query: 185 -----NEELKKAFYEILEISND-EDIETLISDIISNRTALKL 220
                   +     E+ E   D +D   ++  +I   +AL L
Sbjct: 225 SVSGVVGGVIGLSGELGEHLVDVDDARAMLDAMIERLSALPL 266


>gi|300114405|ref|YP_003760980.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
 gi|299540342|gb|ADJ28659.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
          Length = 667

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +    ++L          V A AGSGKT ++  +++ L+   +    +++ +T T  A
Sbjct: 1   MSNLNPQQRLAVRHIDGPLLVLAGAGSGKTRVITHKIVYLIEQCHVSARSIVAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++T                                          GL V 
Sbjct: 61  AREMKSRIGQLLTKGESR-------------------------------------GLVVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           T HA     +++      + + F++ D + S+ LI +  +   +S   ++
Sbjct: 84  TFHALGLKFLRREHEVLRLKAGFSLLDAQDSRALICDLYQQEFSSGGEES 133


>gi|62185554|ref|YP_220339.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3]
 gi|62148621|emb|CAH64393.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3]
          Length = 637

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 37/162 (22%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L S+    Q+ A + P     V A AG+GKT ++  R+L L+     P  +L +T T  A
Sbjct: 2   LTSELNEAQIAAVTSPLSPILVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+L +          +                                    V 
Sbjct: 62  AKELKERILHLCPQAHGSDIPM------------------------------------VC 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I+++     N  ++F I D+  + KL+++  +  
Sbjct: 86  TFHSLGVFILRRSIQALNRENNFIIYDQSDTDKLLKQCLQKF 127


>gi|315633354|ref|ZP_07888645.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393]
 gi|315477854|gb|EFU68595.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393]
          Length = 673

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      +    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 3   MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIGKCGYLPKQIAAVTFTNKAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + I                                       E+  GL V T
Sbjct: 63  REMKERVAQSIGK-------------------------------------ESSKGLIVST 85

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        ++  + DE     L++E     L     ++ + L+     I
Sbjct: 86  FHTLGFDIIKREYKYLGFKANMTLFDEHDQMALLKELTADLLQ----EDKDLLRTLINRI 141

Query: 196 LEISND 201
               ND
Sbjct: 142 SNWKND 147


>gi|328951182|ref|YP_004368517.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
 gi|328451506|gb|AEB12407.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
          Length = 900

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 16/161 (9%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            A+AG+GKT  LV+R L LL A+  P  +  +T T+AAAA++  R+    +         
Sbjct: 5   VASAGTGKTTALVRRYLELLEAH-PPHRVAAVTFTRAAAAQLKSRIYAGFSVLEREGAYY 63

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                    G  P    + +   L   +L  P    + TIH F   +++       +   
Sbjct: 64  ---------GYVPPPERLPRLFSLKEAVLAAP----IHTIHGFFAELLRLVAPAMGLDPD 110

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           F +     +  +  E  ++ L   +   +  L+     + E
Sbjct: 111 FQVLSAGDATGVFREEVRALL--YLRGEDPGLEAPLMHLYE 149


>gi|325201855|gb|ADY97309.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240149]
 gi|325208393|gb|ADZ03845.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis NZ-05/33]
          Length = 671

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV E++                                           GL + T H
Sbjct: 64  MQERVAEMLPKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|225181788|ref|ZP_03735226.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
 gi|225167562|gb|EEG76375.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
          Length = 694

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 71/208 (34%), Gaps = 49/208 (23%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             + A AGSGKT ++  R+  L+    A P  +L LT T  AA E+  R+ E++      
Sbjct: 1   LLILAGAGSGKTRVITHRIAHLIQQRLAAPWEILALTFTNKAAEELRGRIEELVG----- 55

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                             T  G+   T HA    I+++      
Sbjct: 56  ----------------------------------TAPGIWASTFHAASARILREHADRLG 81

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK-----AFYEILEISNDEDIETL 207
            TS F I D      +I    K+ + ++ LD++   K      A         D D    
Sbjct: 82  YTSSFVIYDSADQLTVI----KNVMKNLNLDDDTRFKPRGVLSAISRAKNEMMDVDTYDE 137

Query: 208 ISDIISNRTALKLIFFFFSYLWRRKIIE 235
            +D   +RT  K+   +   L     ++
Sbjct: 138 AADNFYSRTVAKVFRSYQERLRLNNALD 165


>gi|325130511|gb|EGC53266.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis OX99.30304]
          Length = 670

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 3   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 62

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV E++                                           GL + T H
Sbjct: 63  MQERVAEMLPKSQTR-------------------------------------GLTICTFH 85

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 86  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 121


>gi|254796825|ref|YP_003081662.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii
           str. Illinois]
 gi|254590070|gb|ACT69432.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii
           str. Illinois]
          Length = 905

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 88/189 (46%), Gaps = 22/189 (11%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            +DP  S W++++AG GKT +LV+R + LL++      +LC+T TK A AEM +R+  I+
Sbjct: 5   VTDPNVSVWINSSAGCGKTALLVKRAISLLVSKEK--NILCITFTKVATAEMHNRIFAIL 62

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIMQ 145
              S ++D  +   +     +     D  +       ++ T   L ++QT+H+FC   ++
Sbjct: 63  GKLSVMNDTEMDEYLLSTINRTVKDPDYVR------KLVHTADALIQIQTLHSFCWQSIR 116

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
                        ++D +   K I E  +     ++     E  +   +  E + +  + 
Sbjct: 117 -------------MSDPQHLSKEIYEENQHMFCQLLARFIWERCQLSKKTAENTTERKLH 163

Query: 206 TLISDIISN 214
            +++ ++SN
Sbjct: 164 EMLASLLSN 172


>gi|261400846|ref|ZP_05986971.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970]
 gi|269209307|gb|EEZ75762.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970]
          Length = 733

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 3   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 62

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 63  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 85

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           A    I+++         +F+I D   S K+I E  
Sbjct: 86  ALGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 121


>gi|15606167|ref|NP_213544.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5]
 gi|2983362|gb|AAC06949.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5]
          Length = 669

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 67/216 (31%), Gaps = 59/216 (27%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     ++           V A AGSGKT  L  +V  L+      P  +LC+T T  AA
Sbjct: 1   MKLNTQQEEAVRHFGSPLLVVAGAGSGKTKTLTHKVEYLIKEKGLKPYEILCITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+          S                                         T
Sbjct: 61  KEIKERIKNTFGLELEWS----------------------------------------GT 80

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK---------------STLASI 180
            H+    I+++   +  I   F+IADE+ +  +++E  K               S +   
Sbjct: 81  FHSVALKILKKDGEKIGIPKDFSIADEKDTTLIVKEILKKYGLKKEPEEVKEKISKVKEN 140

Query: 181 MLDNNEELK---KAFYEILEISNDEDIETLISDIIS 213
             +    L    + +  +L  +   D   L+ ++ +
Sbjct: 141 FEEPEAWLGVLLEEYQRVLRENKLLDFSDLMRELYN 176


>gi|261380715|ref|ZP_05985288.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703]
 gi|284796427|gb|EFC51774.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703]
          Length = 666

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 38/158 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q           V A AGSGKT ++ Q++  L++     P T+  +T T  AA
Sbjct: 1   MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                           GL + T
Sbjct: 61  TEMQERVSKMLPKSQTR-------------------------------------GLTICT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            H+    I+++   +     +F+I D   S K+I E  
Sbjct: 84  FHSLGMKILREEANQIGYKKNFSILDSTDSAKIIGELL 121


>gi|220919102|ref|YP_002494406.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956956|gb|ACL67340.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1111

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 25/167 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKA 73
                +        +    A AG+GKT +LV R++  +             +  +T T+ 
Sbjct: 9   DQADRERAIHARDENVIADAGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRK 68

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+ E +      +D                       R  L   L       V
Sbjct: 69  AAGELRLRIREALLRALARAD------------------LTELRRRRLADALSALDTAHV 110

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            TIHAF + +++  P+EA ++  + I +++    L++EA  + L ++
Sbjct: 111 GTIHAFADRLLRLRPVEARLSPSYDIVEDD--APLVDEAFAAFLHAV 155


>gi|149183792|ref|ZP_01862193.1| PcrA [Bacillus sp. SG-1]
 gi|148848495|gb|EDL62744.1| PcrA [Bacillus sp. SG-1]
          Length = 705

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 39/133 (29%)

Query: 44  KTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +L  R+  L++    +P  +L +T T  AA EM  R+  I+   +            
Sbjct: 1   KTRVLTHRIAYLMVEKGVNPYNILAITFTNKAAREMKDRIGNILGGVA------------ 48

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                       + + T H+ C  I+++       T +F I D 
Sbjct: 49  --------------------------DEIWISTFHSMCVRILRRDIDRIGFTRNFTILDT 82

Query: 163 EQSKKLIEEAKKS 175
                +I+   K 
Sbjct: 83  TDQLSVIKSILKD 95


>gi|108756911|ref|YP_630227.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108460791|gb|ABF85976.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK
           1622]
          Length = 691

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTH 70
           +DL      ++           V A AGSGKT ++  R++ LL           +L +T 
Sbjct: 1   MDLSKLNPPQREAVVTLEGPLLVLAGAGSGKTRVITHRIVHLLNERPGLIMARNILAVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R++ +                              +A+ +L         
Sbjct: 61  TNKAATEMKERLVHMAG---------------------------PRAQGVL--------- 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             V T HAF   ++++          FAIAD       I  A + 
Sbjct: 85  --VCTFHAFGAEMLREDIHRLGWPKKFAIADMGDQLANIRRAMRE 127


>gi|326576083|gb|EGE26002.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis O35E]
          Length = 689

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 42/188 (22%)

Query: 17  ISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +S+    QL A + T+    V A AGSGKT ++ Q++  L+     P   +  +T T  A
Sbjct: 16  MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +I++                                      E   GL V 
Sbjct: 76  AREMKSRVQKILSH-------------------------------------EKSRGLTVS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193
           T H F    ++      ++  +F+I D +  ++L+ E   +  L+    +  E + +A  
Sbjct: 99  TFHQFGLQFLRYELKHTSLKPNFSILDADDCQRLLAELMVRDNLS--GAERRELVHEAIK 156

Query: 194 EILEISND 201
           +I +  ND
Sbjct: 157 KISDWKND 164


>gi|51893964|ref|YP_076655.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51857653|dbj|BAD41811.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 825

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 82/205 (40%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL----------------- 57
           L+S    +Q  A         + A AGSGKT ++  R+  L+L                 
Sbjct: 5   LLSGLNEQQREAVLHGQGPLLILAGAGSGKTRVIAHRIAHLILFGPEYDPDAPPPPGLTA 64

Query: 58  --------------------------ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
                                         P  +L +T T  AAAEM  RV +++     
Sbjct: 65  DDLEALRLAVEGPGPIDTGAIAHLLGGGIDPWRILAITFTNKAAAEMRERVEQLVG---- 120

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                                   +AR +              T H+ C  ++++     
Sbjct: 121 -----------------------PRAREVWAA-----------TFHSTCVRMLRRDIERL 146

Query: 152 NITSHFAIADEEQSKKLIEEAKKST 176
               +F I D E  + +I +  K  
Sbjct: 147 GYGRNFVILDAEDQQAVIRDCLKRL 171


>gi|86137696|ref|ZP_01056272.1| DNA helicase II, putative [Roseobacter sp. MED193]
 gi|85825288|gb|EAQ45487.1| DNA helicase II, putative [Roseobacter sp. MED193]
          Length = 832

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 72/234 (30%), Gaps = 83/234 (35%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           +  +D ++  + E +   +      + A AG+GKT  L  R++ LL    A  + +L +T
Sbjct: 25  TPYLDGLNPAQREAVECLE--GPVLMLAGAGTGKTKALTARIVHLLNTGSARTNEILAVT 82

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV  ++   +                                      G
Sbjct: 83  FTNKAAREMKERVGSMLGQPAE-------------------------------------G 105

Query: 130 GLKVQTIHAFCEAIMQQFPL----EANITS------------------------------ 155
              + T H+ C  ++++       EA +                                
Sbjct: 106 MPWLGTFHSVCVKLLRRHAELISGEAGVGPDEVIDEVTESESPNPYDELGPSAARRRRSS 165

Query: 156 -----HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                +F I D +   +L+++     + +  +D      +    I++   +  +
Sbjct: 166 VHLKSNFTILDTDDQIRLLKQ----LIRAAGIDEKRWPPRMLAGIIDDWKNRAL 215


>gi|329119934|ref|ZP_08248608.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464090|gb|EGF10401.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 1265

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE 84
           LA     +A + A+AG+GKT+ +     RL+L    P   +L +T TKAA AE+  R+  
Sbjct: 85  LAIPIGGTALIEASAGTGKTYGIAALFTRLILLEKLPVDKVLVVTFTKAATAELKTRLRA 144

Query: 85  IITAWSH-----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            +           ++      + K+  +   +    +    L   L       + TIH F
Sbjct: 145 RLDEALRRIRGDATESPADPFMQKLLAQAAAQEPRERLEMRLKAALSQFDNAAIYTIHGF 204

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           C+ I+  +     +   F    +E  ++ +E   +      +  + +  + AF 
Sbjct: 205 CQRILGDYAFLCQVP--FDTELDENGRRELETYAQDFWRLHVAPDPQNARLAFE 256


>gi|302521802|ref|ZP_07274144.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
 gi|302430697|gb|EFL02513.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
          Length = 1171

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 39/250 (15%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           M+ H +  + S+ +  I  T  +    + P     + A AGSGKT ++  RV+ L+    
Sbjct: 1   MLTHPA--QLSDLL-GIPFTPEQLACVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGT 57

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P  +L LT T  AAAE++ RV   +        +   A   +  G+            
Sbjct: 58  VAPEQVLGLTFTNKAAAELAERVRRSLVRAGISDPDAPPAPGAEPPGEPL---------- 107

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                        + T H+F   ++    L   +     +  +    +L     +     
Sbjct: 108 -------------ISTYHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLRE---- 150

Query: 180 IMLDNNEELKKAFYEILEI---SNDEDIETLISDIISNR---TALKLIFFFF-SYLWRRK 232
                   L + F +++      + E  E L+     +R     L+ +     S    RK
Sbjct: 151 -APGPYPALTRGFSDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAETRLSNDQLRK 209

Query: 233 IIEKSLWSIA 242
           + E +   +A
Sbjct: 210 VPEAAAARLA 219


>gi|326565010|gb|EGE15210.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 103P14B1]
 gi|326574116|gb|EGE24064.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 101P30B1]
          Length = 689

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 42/188 (22%)

Query: 17  ISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +S+    QL A + T+    V A AGSGKT ++ Q++  L+     P   +  +T T  A
Sbjct: 16  MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +I++                                      E   GL V 
Sbjct: 76  AREMKSRVQKILSH-------------------------------------EKSRGLTVS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193
           T H F    ++      ++  +F+I D +  ++L+ E   +  L+    +  E + +A  
Sbjct: 99  TFHQFGLQFLRYELKHTSLKPNFSILDADDCQRLLAELMVRDNLS--GAERRELVHEAIK 156

Query: 194 EILEISND 201
           +I +  ND
Sbjct: 157 KISDWKND 164


>gi|308389552|gb|ADO31872.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha710]
          Length = 671

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|260948414|ref|XP_002618504.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720]
 gi|238848376|gb|EEQ37840.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720]
          Length = 924

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 40/178 (22%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L S    EQ +A++ +     + A  G+GKT +LV RV  LLL     P  ++  T TK 
Sbjct: 84  LFSSLNHEQKMAAEASPGILQIVAGPGTGKTKVLVSRVAHLLLRQRIPPQNIVVTTFTKK 143

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAE+  R+   +       D+IL                                   V
Sbjct: 144 AAAELVERLR--VLGPQVDVDKIL-----------------------------------V 166

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            T H+ C  ++++F  +  +    ++ADE+ + +L+ +A +    S   D+     KA
Sbjct: 167 GTFHSICFRLVRRFGAKIGL-PRVSVADEKDAVQLVAQALEKVDVSAYPDDETAPFKA 223


>gi|89897835|ref|YP_514945.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56]
 gi|89331207|dbj|BAE80800.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56]
          Length = 636

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 37/162 (22%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L  +    Q+ A + P     V A AG+GKT ++  R+L L+     P  +L +T T  A
Sbjct: 2   LTLELNEAQIAAVTAPLSPVLVLAGAGAGKTRVVTCRILHLIKEGIAPREILAVTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+L      S     +                                    V 
Sbjct: 62  AKELKERILHQCPQVSGADIPM------------------------------------VC 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I+++     N  ++F I D+  + KL+++  +  
Sbjct: 86  TFHSLGVFILRRSIQALNRENNFIIYDQSDTDKLLKQCLQKF 127


>gi|322514926|ref|ZP_08067941.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976]
 gi|322119114|gb|EFX91268.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976]
          Length = 672

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 48/228 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q        +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVKGACLVLAGAGSGKTRVIINKITHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L        L  ++ +N  E K     +
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENVAEDKDLLKAL 135

Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           +   ++   + L  +++    R   + +F  F  L++ ++   +    
Sbjct: 136 ISTISNWKNDLLSPEMVLTRLRDERERVFSHFYQLYQNQLKAYNALDF 183


>gi|326796663|ref|YP_004314483.1| ATP-dependent DNA helicase Rep [Marinomonas mediterranea MMB-1]
 gi|326547427|gb|ADZ92647.1| ATP-dependent DNA helicase Rep [Marinomonas mediterranea MMB-1]
          Length = 682

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 38/160 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L S    +            V A AGSGKT ++  ++  L+       S+++ +T T  A
Sbjct: 12  LKSLNNRQLEAVKQIDGPLLVLAGAGSGKTSVITTKIAYLIQTCGFKASSIVAVTFTNKA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV+ +++                                          GL + 
Sbjct: 72  AREMKERVVSMLSKQESR-------------------------------------GLSIS 94

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H     I+++   +A +   F + D +  + LI+E   
Sbjct: 95  TFHTLGLNILRREYRKAGLKEGFTLFDSQDGQALIKEILD 134


>gi|325198582|gb|ADY94038.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis G2136]
          Length = 671

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLHKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|261377453|ref|ZP_05982026.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685]
 gi|269146180|gb|EEZ72598.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685]
          Length = 671

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|325144733|gb|EGC67028.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240013]
          Length = 671

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|296113478|ref|YP_003627416.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4]
 gi|295921172|gb|ADG61523.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4]
 gi|326559400|gb|EGE09825.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 46P47B1]
 gi|326566037|gb|EGE16197.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 12P80B1]
 gi|326568114|gb|EGE18198.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC7]
 gi|326568531|gb|EGE18603.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC1]
 gi|326572434|gb|EGE22426.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC8]
 gi|326572519|gb|EGE22508.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis CO72]
          Length = 689

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 42/188 (22%)

Query: 17  ISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +S+    QL A + T+    V A AGSGKT ++ Q++  L+     P   +  +T T  A
Sbjct: 16  MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +I++                                      E   GL V 
Sbjct: 76  AREMKSRVQKILSH-------------------------------------EKSRGLTVS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193
           T H F    ++      ++  +F+I D +  ++L+ E   +  L+    +  E + +A  
Sbjct: 99  TFHQFGLQFLRYELKHTSLKPNFSILDADDCQRLLAELMVRDNLS--GAERRELVHEAIK 156

Query: 194 EILEISND 201
           +I +  ND
Sbjct: 157 KISDWKND 164


>gi|330957324|gb|EGH57584.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 669

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|70733315|ref|YP_263089.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Pf-5]
 gi|68347614|gb|AAY95220.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Pf-5]
          Length = 669

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++ +                                         GL V T H 
Sbjct: 65  KERVGTLLRSGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++  +       F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHVRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|291006584|ref|ZP_06564557.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1052

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 53/208 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           L      ++  AS       + A  G+GKT  +  R+  L+L    P    L +T T+ A
Sbjct: 478 LAGLDPDQRAAASAEAGPLLIVAGPGTGKTRTVTHRIAHLVLERQVPARECLAITFTRRA 537

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM+ R+  +                                         T   L V 
Sbjct: 538 AEEMTERLHALAGP--------------------------------------TAAELTVA 559

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE---------AKKSTLASI--MLD 183
           T H+F   +++    +A +++ F +AD     +++ E         A ++ L+      D
Sbjct: 560 TFHSFGLQLLRDHHDKAGLSADFGLADASVQHEVLTEVAGDERAAKALRAELSRARRGGD 619

Query: 184 NNEELKKAFYEI---LEISNDEDIETLI 208
            +E+   A +     L   N  D + L+
Sbjct: 620 TDEDTAAALHRYTTALRERNLIDFDDLV 647


>gi|167855646|ref|ZP_02478404.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755]
 gi|167853218|gb|EDS24474.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755]
          Length = 673

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q        +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVNGACLVLAGAGSGKTRVIINKIAHLIARCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E+  GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ESSRGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L+    K  L   + ++ + LK     I
Sbjct: 84  FHTLGFEILKREHKLLGYKSGMTLFDEHDQLALL----KHLLPENVTEDKDLLKLLVATI 139

Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232
               ND    E  I+   S+R  +    F+  Y  + K
Sbjct: 140 SNWKNDLLSPEQTIALAKSDRDRV-FSHFYDQYQNQLK 176


>gi|145300876|ref|YP_001143717.1| exodeoxyribonuclease V, beta subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853648|gb|ABO91969.1| exodeoxyribonuclease V, beta subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1206

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-------------------HPSTLLCLTHTKAAA 75
            + A+AG+GKT+ +    LRLLL +                      + +L +T T+AA 
Sbjct: 17  LIEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAAT 76

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+   I           S ++   Q  +  +     AR LL           V T
Sbjct: 77  AELRGRIRARIHEARLAFLRGESKDVLLTQLLEEVEDHELAARRLLA-AERQMDEAAVFT 135

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH FC+ ++ Q   E+   + F         +L  +A      +     ++ L  +   +
Sbjct: 136 IHGFCQRMLTQNAFESG--ALFETEFLTDDSQLRLQAVSDYWRAEFYPVDKTLASSVRAL 193


>gi|254670269|emb|CBA05543.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153]
 gi|325136509|gb|EGC59113.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M0579]
          Length = 671

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|229818113|ref|ZP_04448395.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM
           20098]
 gi|229784717|gb|EEP20831.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM
           20098]
          Length = 1288

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 31/159 (19%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  + + P  S   V A AGSGKT+ + +R++ L+     P  +L LT T+ AA 
Sbjct: 5   TDSPEQAKVINAPVGSDVLVVAGAGSGKTYTMTRRIVSLIEHGVAPERILGLTFTRKAAG 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   + A      + +  +                                V T 
Sbjct: 65  ELLSRVSAAVLADDEHDQDRMFLKPA------------------------------VFTY 94

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            AF ++I++Q+ L      +     E  + +L     + 
Sbjct: 95  DAFFQSIVRQYGLLVGFDQNTQPLSEAGALQLAANTVER 133


>gi|325132192|gb|EGC54888.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M6190]
 gi|325138125|gb|EGC60698.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ES14902]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLHKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|312884785|ref|ZP_07744483.1| ATP-dependent DNA helicase Rep [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367552|gb|EFP95106.1| ATP-dependent DNA helicase Rep [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 672

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNTNQDQAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGK-------------------------------------NEAKGLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L     D +++L +     
Sbjct: 84  FHTLGLNIIKREYKTLGLKAGFSLFDDQDQMALLKE-----LTEQQFDGDKDLLRQLMST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|261392291|emb|CAX49817.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 8013]
 gi|325134572|gb|EGC57216.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M13399]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|261365097|ref|ZP_05977980.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996]
 gi|288566523|gb|EFC88083.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996]
          Length = 666

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 38/174 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q           V A AGSGKT ++ Q++  L++     P T+  +T T  AA
Sbjct: 1   MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                           GL + T
Sbjct: 61  TEMQERVAKMLPK-------------------------------------SQTRGLMICT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            H+    I+++         +F+I D   S K+I E    T    +     ++ 
Sbjct: 84  FHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGGTGKEALFKAQHQIS 137


>gi|325142627|gb|EGC65018.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 961-5945]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|288575116|ref|ZP_06393473.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570857|gb|EFC92414.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 44/206 (21%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           + S  ++ ++  + E +          V A AGSGKT +L  ++  L+   +  P  +L 
Sbjct: 18  KDSPVLESLNPRQREAVSYE--GTPLLVLAGAGSGKTRVLTSKLAWLVAERSVPPWRILA 75

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV  ++                                         
Sbjct: 76  VTFTNKAAREMKDRVDAMLDGGYPYG---------------------------------- 101

Query: 128 PGGLKVQTIHAFCEAIMQQF--PLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
               ++ T H+F   ++ +    LEA     +F + D   S  L++++ K+         
Sbjct: 102 ----QISTFHSFGLQMLFRNRDALEARGYRRNFVVFDRGDSLSLVKKSMKAMKLDTSQME 157

Query: 185 NEELKKAFYEILEISNDEDIETLISD 210
              + +   +    S+   ++  I +
Sbjct: 158 PSWVLECISKAKTGSDPVSMDGAILE 183


>gi|171058460|ref|YP_001790809.1| exodeoxyribonuclease V subunit beta [Leptothrix cholodnii SP-6]
 gi|170775905|gb|ACB34044.1| exodeoxyribonuclease V, beta subunit [Leptothrix cholodnii SP-6]
          Length = 1272

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 25/223 (11%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH-------------PSTLLCLTHTKAAAAEM 78
            S  + A+AG+GKT  +    LRL+L +               P+ +L +T T+AA  E+
Sbjct: 13  GSHLIEASAGTGKTWTIAALYLRLVLGHGERESVDSPLPRPLLPAEILVMTFTRAATREL 72

Query: 79  SHRVLEIITAWSH-----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           S R+ E +   +               +  ++   P +++   A + L    E      V
Sbjct: 73  SDRIRERLIEAARCFRGEAEPAPHDHFLRDLRADYPGEAERRDAAYRLALAAEGMDDAAV 132

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TI A+C+ ++++   ++     F    E        +A +        +       A  
Sbjct: 133 HTIDAWCQRMLREHAFDS--AQLFDEELEADEAGRRRQAVQDYWRR---EVYPLRGAALE 187

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            +L +  +  +  L S +      L L+      L  R  + +
Sbjct: 188 TVLSLWPE--VAELQSQVAGLLGKLDLLEGVPEGLGLRDWLGQ 228


>gi|157960189|ref|YP_001500223.1| ATP-dependent DNA helicase Rep [Shewanella pealeana ATCC 700345]
 gi|157845189|gb|ABV85688.1| ATP-dependent DNA helicase Rep [Shewanella pealeana ATCC 700345]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 43/168 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           +    V A AGSGKT +++ ++  L+         +  +T T  AA EM  RV + +   
Sbjct: 15  SGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAAREMKERVSQSMGR- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                     +AR           GL + T H     I+++   
Sbjct: 74  -------------------------KEAR-----------GLWISTFHTLGLEIIKREHK 97

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              + + F++ D++ +  L++E  +  L     D +++L +     + 
Sbjct: 98  VVGLKAGFSLFDDQDTLALLKELTQDEL-----DEDKDLLRLLATTIS 140


>gi|7262775|gb|AAF43958.1|U07832_2 helicase I [Pseudomonas aeruginosa]
          Length = 498

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGGEGK-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHERLGYKPGFSIFDESDIKALLTDIMQ 123


>gi|229821382|ref|YP_002882908.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229567295|gb|ACQ81146.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1136

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 12/178 (6%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
             E +  +   + T  +  +   P     V A AGSGKT  +  RV  L+  +   PS +
Sbjct: 16  ALELARLLGRPAPTPEQVAVIEAPLEPMLVVAGAGSGKTATMTDRVTYLVANSLVRPSEV 75

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT T+ AA+E++ RV   +                   G     +D   +       L
Sbjct: 76  LGLTFTRKAASELAERVERHLALLHRHG-----------LGSGAEPADAELSGASSSAGL 124

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                 ++ T +A+  ++++ + L   +     +  +    +L     +S    + +D
Sbjct: 125 LGEDRPRISTYNAYAGSLVKDYGLRIGVEPDAGLIGDAGRYQLAARVVESWDTDLDVD 182


>gi|154488221|ref|ZP_02029338.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis
           L2-32]
 gi|154083372|gb|EDN82417.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis
           L2-32]
          Length = 1371

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 30/166 (18%)

Query: 18  SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P+     V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+
Sbjct: 34  TDSPEQAAVIQAPSYEDVVVVAGAGSGKTYTMTRRIITLIDQGISPEKILGLTFTRKAAS 93

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +T          +   T++   KP                       V T 
Sbjct: 94  ELLSRVSAAVTR-------NQAGRGTRVAFLKPE----------------------VSTY 124

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            AF + I++Q+ L      +     E  + +LI       +  +M 
Sbjct: 125 DAFFQTIVRQYGLLVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMA 170


>gi|325205799|gb|ADZ01252.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M04-240196]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|260436511|ref|ZP_05790481.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus
           sp. WH 8109]
 gi|260414385|gb|EEX07681.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus
           sp. WH 8109]
          Length = 1206

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 19/171 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L    LRL+    +    LL +T T AAA E+  R+ + +       
Sbjct: 18  LLEASAGTGKTFALAHLCLRLITEADYALEALLVVTFTDAAAEELRSRIGQRLQQSLQGL 77

Query: 94  DEILSAEIT---------KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           + +                + G +P ++     R LL+  LE      + TIH FC   +
Sbjct: 78  ERLEQGMEASAPDTVLADWLSGSEPGEARQRWIRRLLV-ALEQLDRADITTIHGFCRRSL 136

Query: 145 QQFPLEANITSHFAIAD---EEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++  L     S+ A  +   +  +  L  E  +      +L    +  KA 
Sbjct: 137 RRLAL-----SNAAAMEPQLDTDASALQAEVVQDLWQQELLSLPPDQFKAL 182


>gi|167746761|ref|ZP_02418888.1| hypothetical protein ANACAC_01473 [Anaerostipes caccae DSM 14662]
 gi|167653721|gb|EDR97850.1| hypothetical protein ANACAC_01473 [Anaerostipes caccae DSM 14662]
          Length = 1032

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 49/188 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K +Q   +   R+  V A  G+GKT  LV ++  L+   N  PS +  +T T  AAAEM
Sbjct: 462 NKEQQEAVTAENRAVAVIAGPGTGKTKTLVDKIAYLVKERNVSPSQVTAVTFTNQAAAEM 521

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + +     + D                                    + + T H+
Sbjct: 522 RERLAKRLGGKRAVKD------------------------------------MTIGTFHS 545

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  +++Q   +        +ADE +  +  +EA          D++++ K    +I   
Sbjct: 546 ICLQLLKQQGEDI------ILADEAELLETAKEALNRL------DSDKKPKDFLKQISNF 593

Query: 199 SNDEDIET 206
            N+  +E 
Sbjct: 594 KNNVPMEE 601


>gi|330964285|gb|EGH64545.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 669

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|270700810|ref|ZP_06223053.1| DNA helicase II [Haemophilus influenzae HK1212]
 gi|270315854|gb|EFA27952.1| DNA helicase II [Haemophilus influenzae HK1212]
          Length = 84

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
          + SE +D ++  + E + A  P  +  V A AGSGKT +L  R+  L+ + N    +++ 
Sbjct: 2  DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59

Query: 68 LTHTKAAAAEMSHRVLEIITAWSH 91
          +T T  AAAEM HR+   +   + 
Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ 83


>gi|145629666|ref|ZP_01785463.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21]
 gi|144978177|gb|EDJ87950.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIGKCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EQSKGLLVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L +    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLSELISVI 139

Query: 196 LEISND 201
               N+
Sbjct: 140 SNWKNN 145


>gi|86160294|ref|YP_467079.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776805|gb|ABC83642.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1111

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 25/167 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKA 73
                         +    A AG+GKT +LV R++  +             +  +T T+ 
Sbjct: 9   DQADRDRAIHARDENVIADAGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRK 68

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+ E +      +D                       R  L   L       V
Sbjct: 69  AAGELRLRIREALLRALARAD------------------LTELRRRRLADALSALDTAHV 110

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            TIH+F + +++  P+EA ++  + I +++    L++EA  + L ++
Sbjct: 111 GTIHSFADRLLRLRPVEARLSPSYDIVEDD--APLVDEAFAAFLHAV 155


>gi|319410695|emb|CBY91074.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis WUE 2594]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV E++                                           GL + T H
Sbjct: 64  MQERVAEMLPK-------------------------------------SQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|296314222|ref|ZP_06864163.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC 43768]
 gi|296839123|gb|EFH23061.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC 43768]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|285019926|ref|YP_003377637.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283475144|emb|CBA17643.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 658

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 48/205 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      ++           V A AGSGKT ++V+++  L+ +  +P   +  +T T  +
Sbjct: 1   MHGLNPPQRAAVLHDEGPLLVLAGAGSGKTRVIVEKIAHLIASGRYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I                                       E   GL + 
Sbjct: 61  AKEMRERVAKRIRN-------------------------------------EAADGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA     +Q       +   F+I D + +   I++        +M     +       
Sbjct: 84  TFHALGLKFLQIEHAAVGLKRGFSIFDADDAAAQIKD--------LMPGAKPDAVDDVKN 135

Query: 195 ILEISNDEDI--ETLISDIISNRTA 217
           ++  + +  +  E  ++   SNR  
Sbjct: 136 LISRAKNAGLSPEQAMAAARSNREQ 160


>gi|134100194|ref|YP_001105855.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912817|emb|CAM02930.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1044

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 53/208 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           L      ++  AS       + A  G+GKT  +  R+  L+L    P    L +T T+ A
Sbjct: 470 LAGLDPDQRAAASAEAGPLLIVAGPGTGKTRTVTHRIAHLVLERQVPARECLAITFTRRA 529

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM+ R+  +                                         T   L V 
Sbjct: 530 AEEMTERLHALAGP--------------------------------------TAAELTVA 551

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE---------AKKSTLASI--MLD 183
           T H+F   +++    +A +++ F +AD     +++ E         A ++ L+      D
Sbjct: 552 TFHSFGLQLLRDHHDKAGLSADFGLADASVQHEVLTEVAGDERAAKALRAELSRARRGGD 611

Query: 184 NNEELKKAFYEI---LEISNDEDIETLI 208
            +E+   A +     L   N  D + L+
Sbjct: 612 TDEDTAAALHRYTTALRERNLIDFDDLV 639


>gi|121635136|ref|YP_975381.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18]
 gi|120866842|emb|CAM10600.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18]
          Length = 690

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 23  LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 82

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 83  MQERVAKMLHKSQTR-------------------------------------GLTICTFH 105

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 106 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 141


>gi|326559747|gb|EGE10157.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 7169]
          Length = 689

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 42/188 (22%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +S+    QL A +       V A AGSGKT ++ Q++  L+     P   +  +T T  A
Sbjct: 16  MSKLNPRQLEALNYTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +I++                                      E   GL V 
Sbjct: 76  AREMKSRVQKILSH-------------------------------------EKSRGLTVS 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193
           T H F    ++      ++  +F+I D +  ++L+ E   +  L+    +  E + +A  
Sbjct: 99  TFHQFGLQFLRYELKHTSLKPNFSILDADDCQRLLAELMVRDNLS--GAERRELVHEAIK 156

Query: 194 EILEISND 201
           +I +  ND
Sbjct: 157 KISDWKND 164


>gi|213971722|ref|ZP_03399828.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato T1]
 gi|301382491|ref|ZP_07230909.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062439|ref|ZP_07253980.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           K40]
 gi|302133040|ref|ZP_07259030.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213923540|gb|EEB57129.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato T1]
          Length = 669

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|33865451|ref|NP_897010.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. WH
           8102]
 gi|33632620|emb|CAE07432.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus
           sp. WH 8102]
          Length = 1186

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 11/148 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L    LRL+   A P  +LL +T T AAAAE+  R+ + +       
Sbjct: 16  LLEASAGTGKTFALAHLTLRLISEAAMPLPSLLVVTFTDAAAAELRSRIGQRLQDALAGL 75

Query: 94  DEILSAE--------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           + +   +        + +   + P           ++  LE      + TIH FC   ++
Sbjct: 76  EAVARGDALPKADSVLQQWWQQAPQGQSRRDWISRVLMALEQLDAADITTIHGFCSRSLR 135

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAK 173
           +  + +       +  E  +  L++E  
Sbjct: 136 RQAINSGAAMQQQL--ETDATALVQEVV 161


>gi|331018528|gb|EGH98584.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 669

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|330876458|gb|EGH10607.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 669

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|28867353|ref|NP_789972.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850587|gb|AAO53667.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 669

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|260770678|ref|ZP_05879608.1| ATP-dependent DNA helicase Rep [Vibrio furnissii CIP 102972]
 gi|260614259|gb|EEX39448.1| ATP-dependent DNA helicase Rep [Vibrio furnissii CIP 102972]
 gi|315178566|gb|ADT85480.1| ATP-dependent DNA helicase Rep [Vibrio furnissii NCTC 11218]
          Length = 671

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+   +     +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARHIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVGQTLGKAESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++   +  + + F++ D++    L++E  +  L      + + L++    I
Sbjct: 84  FHTLGLNIIRREYKQLGLKAGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLTSTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|148378683|ref|YP_001253224.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|148288167|emb|CAL82235.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
          Length = 884

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 56/164 (34%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D+IS     Q  A   T     V A AGSGKT  L  R + L+       + +LC T T
Sbjct: 3   LDVISGLNDAQREAVTTTEGYIRVIAGAGSGKTKALTSRYIYLVHELGISTANILCATFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +I                                       +   GL
Sbjct: 63  NKAAREMKKRIRTMIG--------------------------------------DNDTGL 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            + T H FC  ++++     N   +F + D E    ++    + 
Sbjct: 85  -IGTFHGFCRRLLKEDIYTINYPDNFIVMDNEDMDLVLRIVYED 127


>gi|296169029|ref|ZP_06850691.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896288|gb|EFG75947.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 1135

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 24/169 (14%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           MI   S  E ++ + L   T+ +  + + P     V A AG+GKT  +  RV+ L+    
Sbjct: 44  MIPRFSPAELADALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGY 103

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  +L LT T+ AA ++  RV   +   + +             G  P+    ++   
Sbjct: 104 AEPGQVLGLTFTRKAAGQLLRRVRSRLARLAGV-------------GLGPDGPAPAEP-- 148

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                    G   V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 149 --------AGAPTVSTYHAFAGSLIRDYGLLLPVEPDTRLLGETELWQL 189


>gi|15677304|ref|NP_274459.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58]
 gi|7226688|gb|AAF41807.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58]
 gi|316984578|gb|EFV63543.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76]
 gi|325140608|gb|EGC63128.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis CU385]
 gi|325199937|gb|ADY95392.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76]
          Length = 671

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|307824971|ref|ZP_07655193.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
 gi|307734018|gb|EFO04873.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
          Length = 667

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 37/177 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +Q           V A AGSGKT ++ +++  L+        +  +T T  AA
Sbjct: 1   MSKLNPQQQAAVKAIDHPLLVLAGAGSGKTRVITEKIAYLVKQGLPARHIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +RV +++                                           GL+V T
Sbjct: 61  REMKNRVSKLLDN-------------------------------------NQQRGLRVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            H+    I++         +   + DE+    L+            +DN +   +  
Sbjct: 84  FHSLGLDILRAESKTLGYKAGITLFDEQDKYTLLRNLISHGAKDCDIDNIDSYSRQI 140


>gi|237801578|ref|ZP_04590039.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024438|gb|EGI04494.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 669

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|153931653|ref|YP_001383067.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934674|ref|YP_001386616.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. Hall]
 gi|152927697|gb|ABS33197.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930588|gb|ABS36087.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. Hall]
          Length = 884

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 56/164 (34%), Gaps = 41/164 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +D+IS     Q  A   T     V A AGSGKT  L  R + L+       + +LC T T
Sbjct: 3   LDVISGLNDAQREAVTTTEGYIRVIAGAGSGKTKALTSRYIYLVHELGISTANILCATFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +I                                       +   GL
Sbjct: 63  NKAAREMKKRIRTMIG--------------------------------------DNDTGL 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            + T H FC  ++++     N   +F + D E    ++    + 
Sbjct: 85  -IGTFHGFCRRLLKEDIYTINYPDNFIVMDNEDMDLVLRIVYED 127


>gi|218768450|ref|YP_002342962.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491]
 gi|254805228|ref|YP_003083449.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
 gi|121052458|emb|CAM08794.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491]
 gi|254668770|emb|CBA06672.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
 gi|325128494|gb|EGC51372.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis N1568]
          Length = 671

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|197124367|ref|YP_002136318.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196174216|gb|ACG75189.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 1111

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 25/167 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKA 73
                         +    A AG+GKT +LV R++  +             +  +T T+ 
Sbjct: 9   DQADRDRAIHARDENVIADAGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRK 68

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+ E +                     + + +D+ + R  L   L       V
Sbjct: 69  AAGELRLRIREALLRAL----------------ARADLTDLRRRR--LADALSALDTAHV 110

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            TIH+F + +++  P+EA ++  + I +++    L++EA  + L ++
Sbjct: 111 GTIHSFADRLLRLRPVEARLSPSYDIVEDD--APLVDEAFAAFLHAV 155


>gi|15604312|ref|NP_220828.1| DNA helicase II [Rickettsia prowazekii str. Madrid E]
 gi|6226298|sp|Q9ZD95|UVRD_RICPR RecName: Full=Probable DNA helicase II homolog
 gi|3861004|emb|CAA14904.1| DNA HELICASE II (uvrD) [Rickettsia prowazekii]
 gi|292572062|gb|ADE29977.1| DNA helicase II [Rickettsia prowazekii Rp22]
          Length = 658

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 43/162 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           + +    ++  A        + A AG+GKT +L  R+  ++  N A P  +L +T T  A
Sbjct: 11  MHTLNAEQKKAALHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLALPHNILAVTFTNKA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EMS RV  +I  +                                        GL + 
Sbjct: 71  AKEMSERVHNLINCY----------------------------------------GLNIG 90

Query: 135 TIHAFCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKK 174
           T H+    I++      N+  +  F I   +    L+++  K
Sbjct: 91  TFHSMAAKILRDQIENLNLGFNNRFTIISHDDQLTLVKDIVK 132


>gi|330469984|ref|YP_004407727.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812955|gb|AEB47127.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 1114

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E ++ + L + T+ +  + + P     V A AGSGKT  +  RV+ L+  +   P  +L 
Sbjct: 27  ELAKLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVVWLVANSYVRPEQVLG 86

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA E+ HRV   +              +      +P                  
Sbjct: 87  LTFTRKAAGELGHRVRTRLDQLIRRLGRRGRDPLDDPLAGEP------------------ 128

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                V T H++   I+ +  L A       +  E    +L++   ++
Sbjct: 129 ----TVATYHSYAGRIVTEHGLRAGYEPSTRLLTEASRWQLVDLIVRN 172


>gi|304387165|ref|ZP_07369409.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091]
 gi|304338769|gb|EFM04879.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091]
          Length = 671

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|254672332|emb|CBA05496.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275]
          Length = 671

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLHKSQTR-------------------------------------GLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|226365847|ref|YP_002783630.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
 gi|226244337|dbj|BAH54685.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
          Length = 1120

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 23/226 (10%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  + + P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 19  PTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARVVWLVANGVVDPEAVLGLTFTRKAAQQ 78

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ R+ + +   +                ++ + S   ++R L        G  +V T H
Sbjct: 79  LTTRIRKRLARLAGSE-----------LLRRVDPSGDLRSRIL-------AGEPEVSTYH 120

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE-LKKAFYEIL 196
           ++   ++ +  L   I     +  E +  +L      S    +  D N   + +A   + 
Sbjct: 121 SYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDLDTDRNPASVTEAVLALA 180

Query: 197 EISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241
               +  +E    D+    T L KL+    +   +R    K L  I
Sbjct: 181 GQLAEHLVEP--DDLREAHTELDKLVHTLPAGPRQRGGPGKDLLDI 224


>gi|15602924|ref|NP_245996.1| hypothetical protein PM1059 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721395|gb|AAK03143.1| Rep [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 671

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +   K +Q      T    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNKQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAYLVAKCGYVPRQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EASRGLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     ++++   +    ++  + DE     L++E      A ++ ++ + L++    I
Sbjct: 84  FHTLGFDMIKREYKQLGFKANMTLFDEHDQYALLKELT----ADLLCEDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SRWKND 145


>gi|291531227|emb|CBK96812.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum 70/3]
          Length = 949

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 32/158 (20%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
             D     + ++   +       + A  G+GKT  LV+R+  L+      PS ++ +T T
Sbjct: 1   MFDFGIANERQKEAVTCTEGPLLIIAGPGTGKTFTLVKRIAYLVFEKGVKPSEIMAITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA ++  R+ +    +S   +                                    +
Sbjct: 61  EKAAHQLVTRISDEFLRYSGCENI-------------------------------NIDEM 89

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            + T H+ C  +M+++       +   I D  + + ++
Sbjct: 90  YIGTFHSVCLRLMKEYSELLPFDADKRIIDSFEQQYMV 127


>gi|262404900|ref|ZP_06081454.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC586]
 gi|262348984|gb|EEY98123.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC586]
          Length = 671

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKMAYLVQQCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                           GL V T
Sbjct: 61  REMKERVAQTLGKGESR-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++    L++E     L    LD +++L +     
Sbjct: 84  FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|53803604|ref|YP_114566.1| ATP-dependent DNA helicase Rep [Methylococcus capsulatus str. Bath]
 gi|53757365|gb|AAU91656.1| ATP-dependent DNA helicase Rep [Methylococcus capsulatus str. Bath]
          Length = 667

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 38/159 (23%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++    +Q  A         V A AGSGKT ++ +++  L+        ++ +T T  AA
Sbjct: 1   MNGLNPQQHAAVTTLDCPLLVIAGAGSGKTRVITEKIAYLIRQGTPARHIVAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV ++        D+ L                                GL V T
Sbjct: 61  REMKSRVGKL------ADDKSLR-------------------------------GLTVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            HA    I+++      + S  +I DE+  + L+ E  +
Sbjct: 84  FHALGLEIVRREHKALELKSAISIFDEQDRQALLRELIR 122


>gi|329118947|ref|ZP_08247642.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464975|gb|EGF11265.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200]
          Length = 671

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 40/157 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++ +++E +         +V A AGSGKT ++ +++  ++      P T+  +T T  AA
Sbjct: 3   LNPSQTEAVRYL--GGPLFVLAGAGSGKTRVITEKIAYMITQAGYKPHTIAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                           GL V T
Sbjct: 61  REMQERVAKMLPRSQTR-------------------------------------GLTVCT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            H+    I+++    A +  +F+I D   S K+I E 
Sbjct: 84  FHSLGMRILREEAHAAGLKKNFSILDATDSGKIIGEI 120


>gi|317471574|ref|ZP_07930920.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316900953|gb|EFV22921.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 584

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 49/188 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K +Q   +   R+  V A  G+GKT  LV ++  L+   N  PS +  +T T  AAAEM
Sbjct: 14  NKEQQEAVTAENRAVAVIAGPGTGKTKTLVDKIAYLVKERNVSPSQITAVTFTNQAAAEM 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + +     + D                                    + + T H+
Sbjct: 74  RERLAKRLGGKRAVKD------------------------------------MTIGTFHS 97

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  +++Q   +        +ADE +  +  +EA          D++++ K    +I   
Sbjct: 98  ICLQLLKQQGEDI------ILADEAELLETAKEALNRL------DSDKKPKDFLKQISNF 145

Query: 199 SNDEDIET 206
            N+  +E 
Sbjct: 146 KNNVPMEE 153


>gi|119896478|ref|YP_931691.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
 gi|119668891|emb|CAL92804.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
          Length = 664

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 38/155 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++  ++  L+      P+ +  +T T  AA EM
Sbjct: 6   NPPQREAIHYLNGPCLVLAGAGSGKTRVITHKIAHLINECGLSPTNVGAITFTNKAAKEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++   +                                     PGGL V T HA
Sbjct: 66  QERVAHLMGGRA-------------------------------------PGGLTVCTFHA 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
               I++Q  L   +   F+I D   + +++ +  
Sbjct: 89  LGVRIIRQEALHCGLKPQFSILDASDAVQIVADVA 123


>gi|327479161|gb|AEA82471.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri DSM 4166]
          Length = 669

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 40/174 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLVQNCGIQARHIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                            S+AR           GL V T H 
Sbjct: 65  KERVGTLLKG--------------------------SEAR-----------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
               I+++          F+I D+   K L+ +  +        D  +E+K   
Sbjct: 88  LGMNIIRKEYARLGYKPGFSIFDDGDIKTLLTDIMQK--EYAGDDGADEIKNLI 139


>gi|152978361|ref|YP_001343990.1| ATP-dependent DNA helicase Rep [Actinobacillus succinogenes 130Z]
 gi|150840084|gb|ABR74055.1| ATP-dependent DNA helicase Rep [Actinobacillus succinogenes 130Z]
          Length = 675

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      +    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQTAVEFTSGPCLVLAGAGSGKTRVIINKIAYLIGKCGYLPRQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                           GL V T
Sbjct: 61  REMKERVAHSIGKGQTK-------------------------------------GLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        ++  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKYLGFKANMTLFDEHDQMALLKELTADYLQ----EDKDLLRELVMRI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|323483647|ref|ZP_08089031.1| hypothetical protein HMPREF9474_00780 [Clostridium symbiosum
           WAL-14163]
 gi|323403074|gb|EGA95388.1| hypothetical protein HMPREF9474_00780 [Clostridium symbiosum
           WAL-14163]
          Length = 109

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAA 74
           ++ TK ++ +     R+  VSA AGSGKT +LV+R++R++  +       LL +T TKAA
Sbjct: 3   VNWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITGDSPIDIDRLLVMTFTKAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           AAEM  R+   I         +       I   +P++  + + R L
Sbjct: 63  AAEMRERIQAAIEKNWKKIPGM------SICSSRPSRYSLPRLRRL 102


>gi|88808889|ref|ZP_01124398.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805]
 gi|88786831|gb|EAR17989.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805]
          Length = 1229

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 93/232 (40%), Gaps = 32/232 (13%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L   V+RL++        LL +T T+AAA E+  R+ + +       
Sbjct: 25  LLEASAGTGKTFALAHLVMRLVVERELKLDALLVVTFTEAAADELRDRIGKRLDGALQGL 84

Query: 94  DEILSAE-----------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +   +           +  ++    +++       LL+  LE      + TIH FC  
Sbjct: 85  LRLEQGDDGGGTASDAVLLEWLEEHGRDRAGRRNKASLLLEALEALERADITTIHGFCRR 144

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF---------- 192
            +++  LE+  +   ++ D+ Q+  L+EE         +L  +                 
Sbjct: 145 TLRRQALESGRSLDLSLDDDPQT--LVEEVAHDLWREQILTLDPGDVAGLLQTGLREDTL 202

Query: 193 -YEILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRR-KIIE-KSLWS 240
             E+L +  D  +     ++ I+   AL+ IF     LW + + +    LWS
Sbjct: 203 TAELLRLDGDCGVRIAEHAETINPEDALRDIF----PLWLKQRWLHFHELWS 250


>gi|218887057|ref|YP_002436378.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758011|gb|ACL08910.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 789

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 76/213 (35%), Gaps = 38/213 (17%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID  ++    Q   A+       V A AGSGKT  +V R+  L+      S +L LT T
Sbjct: 1   MIDYRNELNPAQYQAATTLEGPLLVIAGAGSGKTRTIVYRLANLVEQGVPASAILLLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + +A EM HR   ++   +  +       +T +QG                         
Sbjct: 61  RKSAREMLHRAGRLLEHSATAAVHGGVHGVTGVQG------------------------- 95

Query: 132 KVQTIHAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
              T HAF  ++++QF     EA       + D       I +A +    +  +   +  
Sbjct: 96  --GTFHAFAYSVLRQFRPSGYEAG---DLTVMDGAD----IVDAVRHCKDNQGIGKGDRS 146

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLI 221
                 I+ + +    + L  D +  R A  L+
Sbjct: 147 FPRTQNIVGLISKSRNKELDIDEVIRREAFHLL 179


>gi|325204434|gb|ADY99887.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240355]
          Length = 671

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|120613110|ref|YP_972788.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120591574|gb|ABM35014.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 689

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 39/159 (24%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +     QL A         V A AGSGKT ++  ++ RL+     P  +  +T T  A
Sbjct: 1   MSAGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITMKIGRLIETGLEPRRIAAITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R   +I   +                                          V 
Sbjct: 61  AAEMRERAQHLIGRAAKDVL--------------------------------------VC 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T HA    ++++      +   F+I D +    +I++A 
Sbjct: 83  TFHALGVRMVREDGHVLGLKPQFSILDADDVTGIIKDAA 121


>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 849

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 43/181 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E +  ++  +SE  + S+   +  V A AG+GKT ++  RV   +        +LCLT T
Sbjct: 5   EELTGLNDAQSE--VVSNLNDNLLVMAPAGTGKTKVISLRVAGFINQGIEAKEILCLTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A  E++ R+L++    +                                        +
Sbjct: 63  NKACHELAERLLKVTNGLAK--------------------------------------EV 84

Query: 132 KVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEEL 188
            V+T H+FC  ++++       I+  F++ DEE  K L+ +  K    +A +     +EL
Sbjct: 85  FVKTFHSFCFQLIKEEAKNFGKISRDFSVMDEEDGKFLVRQLMKDDYVIADLAYQYLQEL 144

Query: 189 K 189
           K
Sbjct: 145 K 145


>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 849

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 43/181 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E +  ++  +SE  + S+   +  V A AG+GKT ++  RV   +        +LCLT T
Sbjct: 5   EELTGLNDAQSE--VVSNLNDNLLVMAPAGTGKTKVISLRVAGFINQGIEAKEILCLTFT 62

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A  E++ R+L++    +                                        +
Sbjct: 63  NKACHELAERLLKVTNGLAK--------------------------------------EV 84

Query: 132 KVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEEL 188
            V+T H+FC  ++++       I+  F++ DEE  K L+ +  K    +A +     +EL
Sbjct: 85  FVKTFHSFCFQLIKEEAKNFGKISRDFSVMDEEDGKFLVRQLMKDDYVIADLAYQYLQEL 144

Query: 189 K 189
           K
Sbjct: 145 K 145


>gi|119026323|ref|YP_910168.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765907|dbj|BAF40086.1| widely conserved ATP-dependent DNA helicase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 1356

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 30/166 (18%)

Query: 18  SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  +   P+     V A AGSGKT+ + +R++ L+     P  +L LT T+ AA+
Sbjct: 24  TDSPEQAAVIQAPSYEDVVVVAGAGSGKTYTMTRRIITLIDQGISPEKILGLTFTRKAAS 83

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   +T          +   T++   KP                       V T 
Sbjct: 84  ELLSRVSAAVTR-------NQAGRGTRVAFLKPE----------------------VSTY 114

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            AF + I++Q+ L      +     E  + +LI       +  +M 
Sbjct: 115 DAFFQTIVRQYGLLVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMA 160


>gi|312879906|ref|ZP_07739706.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
 gi|310783197|gb|EFQ23595.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
          Length = 659

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 78/226 (34%), Gaps = 50/226 (22%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           S  ++ ++  + E +L      S  V A AGSGKT +L +++  L+      P  +L +T
Sbjct: 7   SPLLEGLNPPQREAVL--HHESSQLVLAGAGSGKTRVLTRKIAFLIRELGISPGRILAVT 64

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  RV +++                             +AR           
Sbjct: 65  FTNKAAGEMRERVEKLLG---------------------------ERAR----------- 86

Query: 130 GLKVQTIHAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           GL+V T H++    +++      E        + D    K L     K  LA   LD   
Sbjct: 87  GLRVSTFHSYGLHFLRRHEGILQEMGYGRPLLVFDRSDQKGL----VKRLLAEKNLDEKR 142

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232
                  E    + DE    L S  ++    L  ++  +    + +
Sbjct: 143 FDPGWLLETFSTAKDE--RDLSSGTVNLEGMLGQLYLLYEQRMKEQ 186


>gi|51473636|ref|YP_067393.1| DNA helicase II [Rickettsia typhi str. Wilmington]
 gi|81390099|sp|Q68WT1|UVRD_RICTY RecName: Full=DNA helicase II
 gi|51459948|gb|AAU03911.1| DNA helicase II [Rickettsia typhi str. Wilmington]
          Length = 658

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 43/162 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           + +    ++  A        + A AG+GKT +L  R+  ++  N A P  +L +T T  A
Sbjct: 11  MHTLNSEQKKAALHTEGPLLLLAGAGTGKTKVLTSRIANIIQQNLALPHNILAVTFTNKA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EMS RV  +I  +                                        G+ + 
Sbjct: 71  AKEMSERVHNLINCY----------------------------------------GVNIG 90

Query: 135 TIHAFCEAIMQQFP--LEANITSHFAIADEEQSKKLIEEAKK 174
           T H+    I++     L   + + F I   +    L+++  K
Sbjct: 91  TFHSMAAKILRDQIENLNLGLNNKFTIISHDDQLTLVKDIVK 132


>gi|159900168|ref|YP_001546415.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893207|gb|ABX06287.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 641

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 41/162 (25%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +     SEQ  A         V A AGSGKT +L  R+  L+   A   +++ +T T  A
Sbjct: 1   MFDTLNSEQRAAVMAQLGPVLVKAGAGSGKTRVLTYRIAYLIEQGASSDSIVSVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  R+ +++   S                                       GL   
Sbjct: 61  ASELRTRLRDLLGKRSR--------------------------------------GLTAG 82

Query: 135 TIHAFCEAIMQQF--PLEANITSHFAIADEEQSKKLIEEAKK 174
           T HA C  +++Q       N T++F I   ++  +L+++A  
Sbjct: 83  TFHAICGKLLRQHINGRIRNYTANFTIYAGDEQLQLVQQAMD 124


>gi|302188185|ref|ZP_07264858.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae
           642]
          Length = 669

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|326319149|ref|YP_004236821.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375985|gb|ADX48254.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 688

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 39/159 (24%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +     QL A         V A AGSGKT ++  ++ RL+     P  +  +T T  A
Sbjct: 1   MSAGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITMKIGRLIETGLEPRRIAAITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R   +I   +                                          V 
Sbjct: 61  AAEMRERAQHLIGRAAKDVL--------------------------------------VC 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T HA    ++++      +   F+I D +    +I++A 
Sbjct: 83  TFHALGVRMVREDGHVLGLKPQFSILDADDVTGIIKDAA 121


>gi|161870316|ref|YP_001599486.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442]
 gi|161595869|gb|ABX73529.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442]
          Length = 690

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 23  LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 82

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 83  MQERVAKMLHK-------------------------------------SQTRGLTICTFH 105

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 106 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 141


>gi|257075414|ref|ZP_05569775.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1]
          Length = 889

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 90/217 (41%), Gaps = 37/217 (17%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
             +    +  +R   + A AG+GKT +L +R++ LLL  +A P +++  T T  AA EM 
Sbjct: 13  NEQIKPVNSSSRYIKILAGAGAGKTEVLTRRIVNLLLNTDAPPESIVAFTFTDKAAKEMK 72

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +RVL+ I   +   +                            +IL       + TIH+F
Sbjct: 73  NRVLKRIQEIAPQFNTS--------------------------SILNMY----IGTIHSF 102

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++Q+     +   +  +   ++   +++      L  +      +    F + L+I 
Sbjct: 103 CLRLLQEHF---DYGMYKTVDQNQEMAYILQNGYTYGLKQVEGSTYSDKCINFQKTLDIY 159

Query: 200 NDEDI-ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             E+I    I+++  N   +K++  + + + + KII 
Sbjct: 160 YGEEIPRDNINEL--NPNFIKILDRYENSMNKNKIIS 194


>gi|146305294|ref|YP_001185759.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina ymp]
 gi|145573495|gb|ABP83027.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina ymp]
          Length = 669

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 40/174 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLVQNCGIQARHIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                            S+AR           GL V T H 
Sbjct: 65  KERVGTLLRG--------------------------SEAR-----------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
               I+++          F+I D+   K L+ +  +        D  +E+K   
Sbjct: 88  LGMNIIRKEYARLGYKPGFSIFDDGDIKALLTDIMQK--EYAGDDGADEVKNLI 139


>gi|170717349|ref|YP_001784458.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 2336]
 gi|168825478|gb|ACA30849.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 2336]
          Length = 670

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q           V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNAQQQQAVEYTQGPCLVLAGAGSGKTRVIINKIAYLIEQCGYLPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                             K R LL           V T
Sbjct: 61  REMKDRVAHSIGK--------------------------EKTRGLL-----------VST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++Q        ++  + DE     L++E     L     ++ E L++    I
Sbjct: 84  FHTLGFDIIKQEYKHLGFKANMTLFDEYDQMALLKEITADLLK----EDKELLQETVSAI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SRWKND 145


>gi|328947535|ref|YP_004364872.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328447859|gb|AEB13575.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 1265

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 18/137 (13%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKAAAAEMSHR 81
           Q+ A     +A VSA AGSGKT +L  R   LL+   N H   +L LT TK AA+E+  R
Sbjct: 26  QIKAITKKDNAVVSAGAGSGKTDVLALRYAFLLMTDENIHIKNILALTFTKEAASEIYDR 85

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + + ++    D                     K   L    L+     K+QT+ A+  
Sbjct: 86  IYKKLNSFVKFLD----------------NDKYPKQVKLAKRALDEFADAKIQTLDAYSG 129

Query: 142 AIMQQFPLEANITSHFA 158
           ++++       I   F 
Sbjct: 130 SLVRIAASRYGIRPDFT 146


>gi|221135348|ref|ZP_03561651.1| ATP-dependent DNA helicase Rep [Glaciecola sp. HTCC2999]
          Length = 407

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75
           +    ++       +    V A AGSGKT ++  ++  L+     P+  +  +T T  AA
Sbjct: 1   MKLNPAQDQAVKFISGPCLVLAGAGSGKTRVITNKIAHLVRECEMPARFIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +T                           ++AR           GLKV T
Sbjct: 61  REMKERVAQTLTK--------------------------AEAR-----------GLKVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++       +   F++ D++ +  L+++     L  +  D +++  K     
Sbjct: 84  FHTLGLNIIKSNVRPLGLKPGFSLFDDKDTMALLKD-----LTEVEFDGDKDQLKLLQSC 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|52424468|ref|YP_087605.1| UvrD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306520|gb|AAU37020.1| UvrD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 671

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      +    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYTSGPCLVLAGAGSGKTRVIINKIAYLIEKCGYLPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------ELSKGLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        ++  + DE     L++E  +  L      + + L++    I
Sbjct: 84  FHTLGFDIIKREYKHLGFKANMTLFDEHDQMALLKELTEDYLQQ----DKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|302878356|ref|YP_003846920.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302581145|gb|ADL55156.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 666

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 39/162 (24%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           ++S+  +EQ  A+        V A AGSGKT ++  ++  L+         +  +T T  
Sbjct: 1   MLSKLNTEQREAAMYLDGPLLVLAGAGSGKTRVITHKIAYLVEECGYAARNIAAITFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV  ++   S                                       GL V
Sbjct: 61  AANEMRERVSLLLPGKSAK-------------------------------------GLVV 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            T H+    I++           F+I D   + K+I E   S
Sbjct: 84  STFHSLGMTILRAEAKLLGYKPQFSIFDSSDTFKIISELTNS 125


>gi|163748686|ref|ZP_02155939.1| ATP-dependent DNA helicase Rep [Shewanella benthica KT99]
 gi|161331796|gb|EDQ02600.1| ATP-dependent DNA helicase Rep [Shewanella benthica KT99]
          Length = 670

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 66/182 (36%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT +++ ++  L+        T+  +T T  AA
Sbjct: 1   MKLNPRQDEAVHYVSGPCLVLAGAGSGKTRVIINKIAHLVQNCGYKAKTIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAKSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      + + F++ D++ +  L+++  +  L     D +++L ++    
Sbjct: 84  FHTLGLEIIKREHKVVGLKAGFSLFDDQDTLALLKDLTEDEL-----DGDKDLLRSLMST 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|289624144|ref|ZP_06457098.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648073|ref|ZP_06479416.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867953|gb|EGH02662.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 669

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|298484682|ref|ZP_07002785.1| ATP-dependent DNA helicase Rep [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160822|gb|EFI01840.1| ATP-dependent DNA helicase Rep [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 669

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|260914127|ref|ZP_05920600.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC
           43325]
 gi|260631760|gb|EEX49938.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC
           43325]
          Length = 1234

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 16/163 (9%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI 85
             + A+AG+GKT+ +    LRLLL               +L +T T+AA  E+  R+ E 
Sbjct: 19  CLIEASAGTGKTYTIGSLYLRLLLQAGVENFPLPLTVEQILVVTFTEAATNELKGRIRER 78

Query: 86  ITAWSHL------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           I              E   +E   +Q    +  D+  A   L    ++     + TIH F
Sbjct: 79  IHQTKQAFIAYKEQGESALSEEPFLQELIQHIEDIDIAIQRLKIAEQSMDLAAIYTIHGF 138

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           C  ++ Q+   + +  HF +   +   +LI+            
Sbjct: 139 CRRMLMQYAFNSGV--HFNLELVKDEGELIQHCFNEYWREQFY 179


>gi|315634341|ref|ZP_07889628.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC
           33393]
 gi|315476931|gb|EFU67676.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC
           33393]
          Length = 1220

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 85/239 (35%), Gaps = 37/239 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 16  LIEASAGTGKTYTMGSLYLRLLLQAGENTFPYALNVEQILVVTFTEMATEELKRKIRERI 75

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA+    D  +  +   ++    + +D+  A   L    +      + TIH F
Sbjct: 76  YDAKQKLTAYQQTQDSAVFGQDDFLRELVASITDLPLAIQRLTLAEQNMDLAAIYTIHGF 135

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ Q+   + +  HF +    +  +L+    +             + +   + L   
Sbjct: 136 CRRMLMQYAFNSGV--HFNLELSGEEDELLLHLAQKIWREHFYSQPYAVVEFIQKNLVSP 193

Query: 200 ND--------------------EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           ++                       E    + +S  T    +    +   ++K +EK +
Sbjct: 194 SNIVTKIKKFAGIELKLPEKRPHFFEGTFEEFLSKLTDYSQVLIAQTQELKQKWLEKEV 252


>gi|71735974|ref|YP_272392.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482511|ref|ZP_05636552.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|71556527|gb|AAZ35738.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320326736|gb|EFW82781.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331290|gb|EFW87233.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881655|gb|EGH15804.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330985668|gb|EGH83771.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331012841|gb|EGH92897.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 669

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|315185499|gb|EFU19269.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 683

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 52/222 (23%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +  +    +EQ  A         + A AGSGKT ++  ++  L+ A      ++L +T T
Sbjct: 4   LSYLETLNAEQREAVFHSGSPLLILAGAGSGKTRVITTKIAYLVDALGIPARSILAVTFT 63

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R L++                                            G+
Sbjct: 64  NKAAREMYERALQLSPRTE---------------------------------------GV 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            ++T H+F   +++ +     +   FAI D+E ++ L        L+SI+  +       
Sbjct: 85  MIKTFHSFGVWLLRLYGERLGLARDFAIYDDEDARAL--------LSSILDGSQRRHLSR 136

Query: 192 FYEILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRR 231
           +   +  + D  +  E  +S I+ +      ++  +    R 
Sbjct: 137 YAWAISRAKDYALGPEDDLSSILED-DDFPELYARYEDRLRD 177


>gi|308176361|ref|YP_003915767.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117]
 gi|307743824|emb|CBT74796.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117]
          Length = 792

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 44/196 (22%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           E +  ++  + E +  +       + A AGSGKT +L  R+  L+    A P  +L +T 
Sbjct: 22  ELLVGMNPQQEEAVRYA--GGPLLIVAGAGSGKTRVLTHRIAYLMATGRARPHEILAITF 79

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T                     +   +     ++ G+                  +    
Sbjct: 80  TNK-------------------AAAEMRERAAELIGE------------------DQAKK 102

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + + T H+ C  I+++      + S+F+I D   S +LI    KS    + +D      K
Sbjct: 103 MWISTFHSSCVRILRREAATIGMKSNFSIYDSTDSLRLITLVAKS----LEIDPKRFTPK 158

Query: 191 AFYEILEISNDEDIET 206
           A    +    +E I+ 
Sbjct: 159 AIAHKISSLKNELIDD 174


>gi|194098703|ref|YP_002001765.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999007|ref|ZP_04718931.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240080641|ref|ZP_04725184.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19]
 gi|240123598|ref|ZP_04736554.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332]
 gi|193933993|gb|ACF29817.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|317164300|gb|ADV07841.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 671

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             ++QL A        +V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|330890183|gb|EGH22844.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. mori str.
           301020]
          Length = 669

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|33594191|ref|NP_881835.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33564266|emb|CAE43558.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
          Length = 689

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++ ++ E +L  D      V A AGSGKT ++ Q++  LL         ++ LT T  A
Sbjct: 11  GLNPSQKEAVLYLD--GPCLVLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM+ RV  ++       D  L+                               GL + 
Sbjct: 69  AREMAERVKTLV-------DPKLAK------------------------------GLTIS 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA    ++++    A +   F+I D + +  +I+E   +T
Sbjct: 92  TFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQELLATT 133


>gi|221134829|ref|ZP_03561132.1| exodeoxyribonuclease V, beta subunit [Glaciecola sp. HTCC2999]
          Length = 1222

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 82/196 (41%), Gaps = 20/196 (10%)

Query: 35  WVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  ++ LL+     + LL +T TKAA  E+  R+   +  +  + 
Sbjct: 23  LIEASAGTGKTFNITRIAVKVLLVKQISITQLLIVTFTKAATQELKARIAATLQEFLTML 82

Query: 94  DEILSAEITKIQGKKPNKSDM--SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           D+        ++    + + +   KAR +L   +       + TI++FC  ++ Q     
Sbjct: 83  DQPQEQWDPLLRDLIIDNAVVTPDKARLILRQAILEMDEAAIFTINSFCGRMLTQSSFLT 142

Query: 152 NITSHFAIADEE---------QSKKLIEE--AKKSTLASIMLDNNEELKKAFYEIL---- 196
           +      I D+               ++   A +  L++  ++  E+    ++ +L    
Sbjct: 143 HRPFEQTIIDDSQSIYITAIHDQFLALQNKVAYREALSAFGVETPEDFFATYHNVLLNNL 202

Query: 197 --EISNDEDIETLISD 210
             E  N+ +I+ LI  
Sbjct: 203 PVEYPNETNIDELIQQ 218


>gi|330447240|ref|ZP_08310890.1| ATP-dependent DNA helicase Rep [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491431|dbj|GAA05387.1| ATP-dependent DNA helicase Rep [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 672

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 38/163 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+   +     +  LT T  AA
Sbjct: 1   MKLNPRQTEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQKCDYKARNIAALTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                                       +   GL V T
Sbjct: 61  REMKERVGQTLGR-------------------------------------QEAKGLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            H     I+++      + + F++ D++    L++E  +  L 
Sbjct: 84  FHTLGLNIIRREYKHLGLKASFSLFDDQDQMALLKELTEDELE 126


>gi|66043346|ref|YP_233187.1| ATP-dependent DNA helicase RepA [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254053|gb|AAY35149.1| ATP-dependent DNA helicase RepA [Pseudomonas syringae pv. syringae
           B728a]
 gi|330970406|gb|EGH70472.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 669

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|251793588|ref|YP_003008317.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus NJ8700]
 gi|247534984|gb|ACS98230.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus NJ8700]
          Length = 671

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      +    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIGKCGYLPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E+  GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------ESSKGLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        ++  + DE     L++E     L     ++ + L+     I
Sbjct: 84  FHTLGFDIIKREYKHLGFKANMTLFDEHDQMALLKELTADLLQ----EDKDLLRTLINRI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|154497927|ref|ZP_02036305.1| hypothetical protein BACCAP_01905 [Bacteroides capillosus ATCC
           29799]
 gi|150272917|gb|EDN00074.1| hypothetical protein BACCAP_01905 [Bacteroides capillosus ATCC
           29799]
          Length = 717

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 42/167 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            +E ++ ++  + E + +++      V A AGSGKT  L  R   L+      P  +LC+
Sbjct: 1   MTELLEGLNAAQREAVTSTE--GFVRVIAGAGSGKTRALTHRFAYLVNELGILPGNILCV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  +A EM  R+ ++                                           
Sbjct: 59  TFTNKSANEMRQRIHQLTGDNDTGY----------------------------------- 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               + T H FC +++Q+          F + D      +++   + 
Sbjct: 84  ----INTFHGFCVSVLQEDSHAVQYPKSFLVLDNSDIDAMLQIIYEE 126


>gi|225016991|ref|ZP_03706183.1| hypothetical protein CLOSTMETH_00912 [Clostridium methylpentosum
           DSM 5476]
 gi|224950257|gb|EEG31466.1| hypothetical protein CLOSTMETH_00912 [Clostridium methylpentosum
           DSM 5476]
          Length = 1075

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 47/166 (28%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           S  +D +++   ++   +   R+  V A  G+GKT  LV R+  L+      P+ +  +T
Sbjct: 460 SGPLDSLNE--EQRCAVTAEERAVAVIAGPGTGKTKTLVSRIAYLVEHKGIDPAEITAVT 517

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+   +                                           
Sbjct: 518 FTNKAAGEMRQRLQAELG--------------------------------------NRAA 539

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            L + T H+ C  ++ +   E        +ADEE++  L +E  + 
Sbjct: 540 KLTIGTFHSICLNLLTESGDEV------RLADEEETLALAQEVLQQ 579


>gi|77165469|ref|YP_343994.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707]
 gi|254433769|ref|ZP_05047277.1| UvrD/REP helicase subfamily [Nitrosococcus oceani AFC27]
 gi|76883783|gb|ABA58464.1| ATP-dependent DNA helicase Rep [Nitrosococcus oceani ATCC 19707]
 gi|207090102|gb|EDZ67373.1| UvrD/REP helicase subfamily [Nitrosococcus oceani AFC27]
          Length = 668

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +    ++L          V A AGSGKT ++  +++ L+   +    +++ +T T  A
Sbjct: 1   MPNLNPQQRLAVRHIDGPLLVLAGAGSGKTRVITHKIVYLIEQCHLSARSIVAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++T                                          GL V 
Sbjct: 61  AREMKSRIGQLLTKGESR-------------------------------------GLVVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           T HA    I+++      + + F++ D + S+ LI +  +   +S   ++
Sbjct: 84  TFHALGLNILRREHEILRLKAGFSLLDAQDSRALICDLHQQEFSSGGEES 133


>gi|313668563|ref|YP_004048847.1| ATP-dependent DNA helicase [Neisseria lactamica ST-640]
 gi|313006025|emb|CBN87484.1| ATP-dependent DNA helicase [Neisseria lactamica 020-06]
          Length = 671

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           A    I+++         +F+I D   S K+I E  
Sbjct: 87  ALGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|311898256|dbj|BAJ30664.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
          Length = 1073

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 72/212 (33%), Gaps = 45/212 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
            I     +      P     + A AGSGKT ++  RV+ L+ + A  P  +L LT T  A
Sbjct: 18  GIPFNDEQVAAIGAPMAPGVIVAGAGSGKTTVMAARVVWLVGSGAVRPEQVLGLTFTNKA 77

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV   +      +++                              +  G  ++ 
Sbjct: 78  AGELAERVRAALLRAGVRAEDE-----------------------------DALGDPQIS 108

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIM 181
           T HAF   ++++  L   I     +  +    +L     +             S L + +
Sbjct: 109 TYHAFAGTLLKEHGLRLGIEPDVRLLADATRFQLAARVLRQARGPFPALTGTFSALVAEL 168

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIIS 213
           +  + EL +   E   +   E  E L+  +  
Sbjct: 169 VALDSELAEHLVEPARLR--EHDEELLDQLAG 198


>gi|111023339|ref|YP_706311.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822869|gb|ABG98153.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 1115

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 25/227 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  + + P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 19  PTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARVVWLVANGVVDPEAVLGLTFTRKAAQQ 78

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ R+ + +   +                ++ + S   ++R L        G  +V T H
Sbjct: 79  LTARIRKRLARLAGSD-----------LLRRVDPSGDLRSRIL-------AGEPEVSTYH 120

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++   ++ +  L   I     +  E +  +L      S    +  D N     +  E + 
Sbjct: 121 SYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDLDTDRNPA---SVTEAVL 177

Query: 198 ISNDEDIETLI--SDIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241
             + +  E L+   D+    T L KL+    +   +R    K L  I
Sbjct: 178 ALSGQLAEHLVEPDDLREAHTELDKLVHTLPAGPRQRGGPGKELLDI 224


>gi|113460864|ref|YP_718931.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 129PT]
 gi|112822907|gb|ABI24996.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 129PT]
          Length = 670

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q           V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNAQQQQAVEYTQGPCLVLAGAGSGKTRVIINKIAYLIEHCGYLPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                             K R LL           V T
Sbjct: 61  REMKDRVAHSIGK--------------------------EKTRGLL-----------VST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++Q        ++  + DE     L++E     L     ++ E L++    I
Sbjct: 84  FHTLGFDIIKQEYKHLGFKANMTLFDEYDQMALLKEITADLLK----EDKELLQETVSAI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SRWKND 145


>gi|126696548|ref|YP_001091434.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9301]
 gi|126543591|gb|ABO17833.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9301]
          Length = 1208

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L          
Sbjct: 14  LVEASAGTGKSFTLAHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKILLRFHTLKVYL 73

Query: 94  DEILSAEI-TKIQGKKPNKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQFP 148
                 +I   ++    N  D  +++  +I+     +     LKV T HAFC  I+ ++ 
Sbjct: 74  QSHNEVKIDNTLKDWYLNFKDKDESKENIISEIDNFINQFYKLKVITFHAFCNDIIDEYS 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +E  +T    I +   +    ++   +      L+ N EL  A 
Sbjct: 134 IEIGVTQDPYIENNIDN--FYKDVIDNLWIDDFLNLNHELISAV 175


>gi|114778866|ref|ZP_01453665.1| DNA helicase II [Mariprofundus ferrooxydans PV-1]
 gi|114550901|gb|EAU53466.1| DNA helicase II [Mariprofundus ferrooxydans PV-1]
          Length = 699

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 40/161 (24%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           ++     QL A +       + A AGSGKT  ++ R+  L+      P  +L +T T  A
Sbjct: 1   MADLNPAQLAAVEAGDGPQLILAGAGSGKTRTIIHRIGHLISARGVAPHRILAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAE+  R+ E+I                                                
Sbjct: 61  AAELKSRLSELIGDDGGGVVSG-------------------------------------- 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T HA    +++++         F + D +  K L++   K 
Sbjct: 83  TFHAISLRLLRRYAEALAYPRSFQVIDADDQKALVKRILKQ 123


>gi|33603572|ref|NP_891132.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33577697|emb|CAE34962.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
          Length = 689

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++ ++ E +L  D      V A AGSGKT ++ Q++  LL         ++ LT T  A
Sbjct: 11  GLNPSQKEAVLYLD--GPCLVLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM+ RV  ++       D  L+                               GL + 
Sbjct: 69  AREMAERVKTLV-------DPKLAK------------------------------GLTIS 91

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA    ++++    A +   F+I D + +  +I+E   +T
Sbjct: 92  TFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQELLATT 133


>gi|59801156|ref|YP_207868.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|240016517|ref|ZP_04723057.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA6140]
 gi|240112994|ref|ZP_04727484.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11]
 gi|240118044|ref|ZP_04732106.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1]
 gi|240125781|ref|ZP_04738667.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128301|ref|ZP_04740962.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|293399023|ref|ZP_06643188.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62]
 gi|59718051|gb|AAW89456.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|291610437|gb|EFF39547.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62]
          Length = 671

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             ++QL A        +V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|226228582|ref|YP_002762688.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27]
 gi|226091773|dbj|BAH40218.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27]
          Length = 1210

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 12/163 (7%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--------LLCLTHTKAAAAEMSHR 81
           P   + + A+AG+GKT  +   V+RLLL               +L +T T AA  E+  R
Sbjct: 16  PPGISLIEASAGTGKTFNIAMSVVRLLLEQDAAGQPIVSGLGGILVVTFTNAATEELVTR 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQG--KKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           V  ++     +    L A+        ++        A       L     L V TIH F
Sbjct: 76  VRRMLQLAHEVWSGALYAKSNSEIEILRELANGREPWAATRAQEALRALDALAVFTIHGF 135

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           C+ ++ +F LE+       + D+     LIEEA          
Sbjct: 136 CKRVLDEFALESGAPFSMELLDDP--TPLIEEAMFDWWRRTFY 176


>gi|289677648|ref|ZP_06498538.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae
           FF5]
 gi|330901055|gb|EGH32474.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 669

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGSEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|51893634|ref|YP_076325.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51857323|dbj|BAD41481.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 671

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 41/159 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++  A        V A AG+GKT     R+  LL     P  ++C+T T  AA EM 
Sbjct: 12  NPAQRAAALHQDGPLLVIAGAGAGKTRTATHRLACLLARGVPPEAVMCITFTNKAAREMR 71

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R + ++ A +                                        + ++T H+ 
Sbjct: 72  DRAVALVGADAR--------------------------------------RVMIRTFHSA 93

Query: 140 CEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKS 175
              +++Q+     E+  T  F +AD      L++EA   
Sbjct: 94  AMVLLRQYIGDFPESGRTPSFTVADPTIQLALLKEAIAE 132


>gi|163847396|ref|YP_001635440.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222525244|ref|YP_002569715.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163668685|gb|ABY35051.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222449123|gb|ACM53389.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 644

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 43/169 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            E ++L++   +++   + P     V A AGSGKT +L  R+  L+      P  +L +T
Sbjct: 1   MEQLNLLN--PAQRAAVTAPIGPILVKAGAGSGKTRVLTLRIAYLITHYGVAPQQILAVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R+  +                                            
Sbjct: 59  FTNKAAREMRERLSNLPGLRIR-------------------------------------- 80

Query: 130 GLKVQTIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKST 176
           GL   T HA C  I+++         TS F+I   E+  +L  EA    
Sbjct: 81  GLTSGTFHAICTRILRESIEGRLKGYTSSFSIYAGEEQLQLAAEALAGV 129


>gi|309379709|emb|CBX21698.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 670

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A         V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 3   LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 62

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 63  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 85

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           A    I+++         +F+I D   S K+I E  
Sbjct: 86  ALGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 121


>gi|260440441|ref|ZP_05794257.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2]
 gi|291043739|ref|ZP_06569455.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2]
 gi|291012202|gb|EFE04191.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2]
          Length = 671

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +QL A        +V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNPQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|282858133|ref|ZP_06267328.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455]
 gi|282584055|gb|EFB89428.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455]
          Length = 658

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 49/200 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
           +  + +  +++ + E    +       V A AGSGKT +L  ++  L+   N  P  +L 
Sbjct: 3   DSEKLLKGLNEAQRE--AVTFTGAPQLVLAGAGSGKTRVLTSKIAWLIAAQNVKPWRVLA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EMS RV +++                                        +
Sbjct: 61  VTFTNKAAREMSERVEKLLGG--------------------------------------S 82

Query: 128 PGGLKVQTIHAFCEAIM---QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
            GG ++ T H++   ++   ++   +      F I D   S      A K  +  + +D 
Sbjct: 83  LGGAQICTFHSYGLNLLFRNRELLRDRGYNPSFVIYDRSDSLT----AVKHVMQELNIDT 138

Query: 185 NEELKK-AFYEILEISNDED 203
            +     A   I EI +  D
Sbjct: 139 EKFAPSWALNRISEIKSSAD 158


>gi|118472301|ref|YP_886308.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118173588|gb|ABK74484.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 1087

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 27/166 (16%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E S  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A PS +L 
Sbjct: 9   ELSAALGLFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGFATPSQVLG 68

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   +       S    +                        
Sbjct: 69  LTFTRKAAGQLLRRVRTRLARLAGAGLAPGSGASDE------------------------ 104

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                V T HAF   ++++  L   +     +  E +  +L  +  
Sbjct: 105 --SATVSTYHAFAGTLLREHGLLLPVEPDTRLLSETELWQLAYDVV 148


>gi|254493798|ref|ZP_05106969.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291]
 gi|268594855|ref|ZP_06129022.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|268596765|ref|ZP_06130932.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19]
 gi|268682226|ref|ZP_06149088.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332]
 gi|226512838|gb|EEH62183.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291]
 gi|268548244|gb|EEZ43662.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|268550553|gb|EEZ45572.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19]
 gi|268622510|gb|EEZ54910.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332]
          Length = 690

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             ++QL A        +V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 23  LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 82

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 83  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 105

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 106 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 141


>gi|223042143|ref|ZP_03612314.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
 gi|223017082|gb|EEF15523.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
          Length = 672

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q        +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------EKSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L+    K  L   + ++ + LK+    I
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLALL----KHLLPETVSEDKDLLKQLISTI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|219872059|ref|YP_002476434.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165]
 gi|219692263|gb|ACL33486.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165]
          Length = 673

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q        +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVNGACLVLAGAGSGKTRVIINKIAHLIARCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E+  GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------ESSRGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L+    K  L   + ++ + LK     I
Sbjct: 84  FHTLGFEILKREHKLLGYKSGMTLFDEHDQLALL----KHLLPENVTEDKDLLKLLVATI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|330976482|gb|EGH76534.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 669

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGSEGR-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|239908036|ref|YP_002954777.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
 gi|239797902|dbj|BAH76891.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
          Length = 1060

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 35/192 (18%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAH---------------PSTLLCLTHTKAAAAEM 78
             V A+AGSGKTH L  R + L+L  +                   +L +T T  AAAEM
Sbjct: 3   IQVKASAGSGKTHALTGRFIDLVLGASRDLPRACGDASDGAYAVPDILAVTFTNKAAAEM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV+E +   +             +          + AR  L ++L     L ++TI +
Sbjct: 63  RDRVIEALKRLA-------------LDPNPAQPGKRATARRELESLLVHAQRLGIRTIDS 109

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS--KKLIEEA-----KKSTLASIMLDNNEELKKA 191
               + + F LE  +   F  + ++++    L E          TLA    +    L   
Sbjct: 110 LLYLLARVFALELGLRPDFEPSFDDRAILDDLYERLCAGLPADPTLARQFSEAAGALIDH 169

Query: 192 FYEILEISNDED 203
               L   +  D
Sbjct: 170 TKNFLPTVSFRD 181


>gi|282882609|ref|ZP_06291228.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B]
 gi|281297584|gb|EFA90061.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B]
          Length = 977

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 37/193 (19%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q  ++   ++  + + AG+GKT +L QR + ++   N     +L LT T  A  EM++R
Sbjct: 7   QQKASTILDKNISLISGAGTGKTGVLTQRFINIIKAQNGKFDNILALTFTDKATEEMNNR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +   S+                                       L + TIH+FC+
Sbjct: 67  IYHELAKTSYDF---------------------------------NIDKLNIMTIHSFCK 93

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++  +    +I S+F + ++   + L++E+ K  L++    NNE+      ++      
Sbjct: 94  DLILSYNRYLHINSNFDLDNDFFCQILLKESIKKILSTY---NNEDYLSFLLDLNFSIVP 150

Query: 202 EDIETLISDIISN 214
            D+E +  D+ + 
Sbjct: 151 RDVEDIFFDLYNR 163


>gi|291296725|ref|YP_003508123.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290471684|gb|ADD29103.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 920

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 22/181 (12%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            A+AG+GKT  LV R L L+        +  +T T+ AA E+  RV   I          
Sbjct: 5   VASAGTGKTASLVLRYLELIAKGTPLRRIAGVTFTRKAADELRVRVAAAI---------- 54

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              E     G+  +      +R           G  + TIH F    ++      ++   
Sbjct: 55  ---EEVLQTGRHLSFVASGGSRAAFQEAAREIAGATLSTIHGFMAQCLRLAAPLLHLDPD 111

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
           F++  + +++ + EE +  TL  +  D +         +  + +DE  E L+  + S R+
Sbjct: 112 FSMLGDWEAQAIFEE-EWQTLRYLAQDAHHP-------LFGLVSDELTEPLL-HLFSRRS 162

Query: 217 A 217
            
Sbjct: 163 Q 163


>gi|84494608|ref|ZP_00993727.1| putative DNA helicase [Janibacter sp. HTCC2649]
 gi|84384101|gb|EAP99981.1| putative DNA helicase [Janibacter sp. HTCC2649]
          Length = 1103

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  +   P R   V A AGSGKT  +  RV+ L+      P  +L LT T+ AA E
Sbjct: 29  PTPEQTAVIEAPLRPLLVIAGAGSGKTETMAARVVWLVANGFVEPEDVLGLTFTRKAATE 88

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +S R+   +            A++ ++    P + D + +             + V T H
Sbjct: 89  LSDRIGNRL------------AQLRRVGLWTPQEVDGAPSLG---------AAVSVSTYH 127

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           ++   ++++  L     +   +  E  + +   EA 
Sbjct: 128 SYAGRLVREHGLRLGYEADTRLLSEAAAWQTAHEAV 163


>gi|323479631|gb|ADX79070.1| uvrD/REP helicase family protein [Enterococcus faecalis 62]
          Length = 606

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 46/215 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ T S+Q +      S  V+A  GSGKT +L QR+ R+L        +L LT +  AA 
Sbjct: 1   MNLTNSQQEIVDYIDGSLLVTAGPGSGKTRVLTQRIARILELKK--GKVLALTFSNKAAE 58

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E++ RV + ++                                     +E    +KV+TI
Sbjct: 59  EITERVKKQLS-------------------------------------VENHERIKVETI 81

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSK-KLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           H+FC  ++     +  + +   + ++   K ++++ A  +  + +ML  ++ L K    I
Sbjct: 82  HSFCLDLVLNRGNQIGLEAGLTVIEDRNDKLEILKRAYFN--SKMMLPEDKILHKELRAI 139

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
            E   +     L  D I N +  + IF  ++ L +
Sbjct: 140 EEHKKNF----LYPDNIENNSEFRDIFETYNNLLK 170


>gi|268599073|ref|ZP_06133240.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11]
 gi|268603757|ref|ZP_06137924.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1]
 gi|268684377|ref|ZP_06151239.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268686698|ref|ZP_06153560.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|268583204|gb|EEZ47880.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11]
 gi|268587888|gb|EEZ52564.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1]
 gi|268624661|gb|EEZ57061.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268626982|gb|EEZ59382.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035]
          Length = 690

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             ++QL A        +V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 23  LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 82

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 83  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 105

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 106 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 141


>gi|225155825|ref|ZP_03724312.1| ATP-dependent DNA helicase [Opitutaceae bacterium TAV2]
 gi|224803477|gb|EEG21713.1| ATP-dependent DNA helicase [Opitutaceae bacterium TAV2]
          Length = 1069

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 41/198 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           L      ++  AS       + A  G+GKT  L  R+  L+  + A P + L +T T+ A
Sbjct: 498 LAGLDPDQRAAASIVRGPLLIIAGPGTGKTRTLTHRIAHLIADHDAPPESCLAITFTRRA 557

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++                                            + V 
Sbjct: 558 AGEMRERLAQLLPDGRG-------------------------------------SRVLVT 580

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK---KSTLASIMLDNNEELKKA 191
           T HA    I+++   + ++ +   +A E ++  L  E      +    +  D       A
Sbjct: 581 TFHALGLTILREQQEKLDLGAPLRVAGEREAFALAREILGISAADARRLFADRAIPPPPA 640

Query: 192 FYEILEISNDEDIETLIS 209
           + + +      D + LI+
Sbjct: 641 YTQAMRARGLVDFDDLIA 658


>gi|149910342|ref|ZP_01898985.1| putative ATP-dependent DNA helicase Rep [Moritella sp. PE36]
 gi|149806590|gb|EDM66558.1| putative ATP-dependent DNA helicase Rep [Moritella sp. PE36]
          Length = 671

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 38/164 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+   +     +  LT T  AA
Sbjct: 1   MKLNPRQDEAVKYISGPCLVLAGAGSGKTRVITTKIAHLVQNCSYKACNIAALTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + +                                           GL V T
Sbjct: 61  REMKERIAKTLGKKEAK-------------------------------------GLMVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            H     I+++      I   F + D++    L++E  + TL  
Sbjct: 84  FHTLGLNIIRKEYKTLGIKQAFTLFDDQDQLALLKELTQDTLEE 127


>gi|325680777|ref|ZP_08160315.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8]
 gi|324107557|gb|EGC01835.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8]
          Length = 1234

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 33/177 (18%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKA 73
           ++ T+ ++       R   VSA AGSGKT +L++R++RLL           LL +T T  
Sbjct: 3   VNWTEDQEKAIKSFGRGVTVSAAAGSGKTAVLIERIIRLLTDKEKKIPADKLLAVTFTID 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAA+M  +               L+A   K   + PN + + + + L+          ++
Sbjct: 63  AAAQMRDK---------------LNAAFEKKLREDPNDTWVLQQQELVQLA-------RI 100

Query: 134 QTIHAFCEAI----MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            TI +FC  +    + QF     +     I  + + + + + A +     +  D+++
Sbjct: 101 STIDSFCFDMVKENLNQFAFTGGL----KILGDAERELVFDTAFEQAAEELCGDDHD 153


>gi|15835512|ref|NP_297271.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
 gi|270285695|ref|ZP_06195089.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
 gi|270289703|ref|ZP_06196005.1| ATP-dependent helicase PcrA [Chlamydia muridarum Weiss]
 gi|301337090|ref|ZP_07225292.1| ATP-dependent helicase PcrA [Chlamydia muridarum MopnTet14]
 gi|7190926|gb|AAF39692.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
          Length = 634

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 38/163 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           L S+  + Q+ A + P +   V A AG+GKT ++  R+L L+      PS +L +T T  
Sbjct: 2   LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVSHRILYLIEEAQLDPSQILAITFTNK 61

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E++ RVL                                          +  G   V
Sbjct: 62  AAKELNERVLTQC------------------------------------NFPDYRGIPMV 85

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+    I+++     +  S+FAI D+  S+KLI++  +  
Sbjct: 86  STFHSLGVYILRRSIQLLDRQSNFAIYDQSDSEKLIKQCLRKL 128


>gi|152997652|ref|YP_001342487.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MWYL1]
 gi|150838576|gb|ABR72552.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MWYL1]
          Length = 682

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 38/160 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  + +            V A AGSGKT ++  ++  L+       ++++ +T T  A
Sbjct: 12  LRNLNERQLDAVKQIDGPLLVLAGAGSGKTSVITTKIAYLIQTCGFKANSIIAVTFTNKA 71

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV+ +++                                          GL + 
Sbjct: 72  AREMKERVVGMLSKQESR-------------------------------------GLSIS 94

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H     I+++    A +   F + D + S  LI+E   
Sbjct: 95  TFHNLGLRILRKEYRRAGLKEGFTLFDSQDSLSLIKEILD 134


>gi|187479679|ref|YP_787704.1| ATP-dependent DNA helicase [Bordetella avium 197N]
 gi|115424266|emb|CAJ50819.1| ATP-dependent DNA helicase [Bordetella avium 197N]
          Length = 684

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++  + E +L  D      V A AGSGKT ++ Q++  LL         ++ LT T  A
Sbjct: 10  GLNPAQKEAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM+ RV  ++                          D   A+           GL + 
Sbjct: 68  AREMTERVKPLV--------------------------DRKLAK-----------GLTIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HA    ++++  + A +   F+I D + +  +I++   +T
Sbjct: 91  TFHALGVRLLREEAVHAGLKPQFSILDADDAMAIIQDLLATT 132


>gi|73666864|ref|YP_302880.1| ATP-dependent DNA helicase Rep [Ehrlichia canis str. Jake]
 gi|72394005|gb|AAZ68282.1| ATP-dependent DNA helicase, Rep family [Ehrlichia canis str. Jake]
          Length = 639

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 42/174 (24%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           D I+    +Q  A  +      + A AG+GKT  +  R+  ++  N A P+ +L +T T 
Sbjct: 3   DYITSLNEDQKEAVININGPILILAGAGTGKTRTVTSRIAYIINNNFALPNQILAVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ E+  A++                                        + 
Sbjct: 63  KAANEMLARINEMTPAYN----------------------------------------IW 82

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           + T HA    I++       + + F I + +   ++I+           LD ++
Sbjct: 83  LGTFHAIATKILRLHAEIVGLKNDFTIINTDDQLQVIKNIVNDMHPEYGLDAHK 136


>gi|307825819|ref|ZP_07656035.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum
           SV96]
 gi|307733127|gb|EFO03988.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum
           SV96]
          Length = 1185

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +   VLR ++        LL +T TKAA  E+  RV   +       
Sbjct: 19  LIEASAGTGKTYAIAMLVLRFVVEQGIPIEKLLVVTFTKAATEELKDRVRSRLAEARRAL 78

Query: 94  D-----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           D           E +   I     K   + ++ K R  L   L       + TIH FC+ 
Sbjct: 79  DSLDRQAQGRHTENIDDNIVDWLAKLDIEPELVKQR--LQMALLDIDQAGIFTIHGFCQR 136

Query: 143 IMQQFPLEAN 152
           ++++  LE+ 
Sbjct: 137 VLREHALESG 146


>gi|300867523|ref|ZP_07112174.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506]
 gi|300334517|emb|CBN57344.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506]
          Length = 983

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 64/156 (41%), Gaps = 41/156 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ T  +Q   +    +  + A AGSGKT ++ +R+ +++       +++  T T+ A+ 
Sbjct: 3   LNYTVEQQQAIAHREGNLLIIACAGSGKTEVISKRIAQMVDEGVSKQSIIAFTFTERASR 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   +                  +   P+ + +              G + V TI
Sbjct: 63  ELKTRIRGHL------------------EDINPDDASL--------------GDMYVGTI 90

Query: 137 HAFCEAIMQQFPLEANITS---HFAIADEEQSKKLI 169
           H+FC  ++++      I +   +F + D+ +   LI
Sbjct: 91  HSFCLQLLKE------IDTQYRNFEVMDDVRQAALI 120


>gi|302308651|ref|NP_985640.2| AFR093Wp [Ashbya gossypii ATCC 10895]
 gi|299790729|gb|AAS53464.2| AFR093Wp [Ashbya gossypii ATCC 10895]
          Length = 1131

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 38/165 (23%)

Query: 14  IDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
            +L +     Q  A   DPT++  + A  G+GKT +L  R   L+ +   +P +++  T 
Sbjct: 3   FELFNGLNQRQYEAVTFDPTKALQIVAGPGTGKTKVLTTRYAYLVAIKKINPLSIIMTTF 62

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TK AA E+  RV  I+      + ++L                                 
Sbjct: 63  TKKAADEIKARVEPILQRCGFDTSKLL--------------------------------- 89

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             + T H+ C  ++ Q      + S + +    ++  +I++    
Sbjct: 90  --IGTFHSICANLLHQHGELIGLPSSWRVFSPAETDPIIKKLVAD 132


>gi|259481647|tpe|CBF75362.1| TPA: DNA helicase and DNA-dependent ATPase (Eurofung) [Aspergillus
           nidulans FGSC A4]
          Length = 997

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 45/220 (20%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            +D ++  +   + +S P     V A  GSGKT  L  RV  LL      P  ++C T T
Sbjct: 7   ILDGLNSAQRTAVTSSAPI--LQVLAPPGSGKTKTLTSRVAYLLAHDGYRPQDVICCTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+ EM  R+ +++                                            L
Sbjct: 65  IKASREMRERLAKLVGD-------------------------------------HVQSRL 87

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C   + ++     +   F IAD   S  +I    K     + +  N    + 
Sbjct: 88  ILGTFHSICRRYLVRYGHLIGLQKGFGIADSGDSLAIIRRIVKRL--QLGIQPNTARARI 145

Query: 192 FYEILEISNDEDI---ETLISDIISNRTALKLIFFFFSYL 228
            ++     + +D+   +  IS ++ +R  +++   + S L
Sbjct: 146 SHQKAHGVSPDDVAAKQNKISKLLEHREFVQVYREYESEL 185


>gi|123966427|ref|YP_001011508.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9515]
 gi|123200793|gb|ABM72401.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9515]
          Length = 1212

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 10/191 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++L          
Sbjct: 14  LVEASAGTGKSFTLAHLVLRNVLEKKIKPEEILLLSFTKNTCSELKDKILSRFNKLKSFL 73

Query: 94  DEILSAEITKIQGKKPNKSDMSKAR-----HLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 EI     +  +K    +         +   +     LKV T HAFC  I++++ 
Sbjct: 74  QNHDDTEIDDTLLEWYDKYHKEEKYPENIIFEIDNFVNAFYKLKVTTFHAFCNNILEEYS 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE--ILEISNDEDIET 206
           ++        I +   +  + ++          L+ + E+  A  +  I  I   +  ++
Sbjct: 134 IDIGSPQDPFIENNIDN--VYQDIVNDLWIEEFLNLDPEIISAVSQKKISSIYGSKINKS 191

Query: 207 LISDIISNRTA 217
              DI+ N   
Sbjct: 192 FFVDILKNLDQ 202


>gi|301155111|emb|CBW14574.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           parainfluenzae T3T1]
          Length = 670

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      +    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNSQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIEHCGYLPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL V T
Sbjct: 61  REMKERVAHSIGK-------------------------------------EKSKGLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S+  + DE     L++E     L     ++ + L++    I
Sbjct: 84  FHTLGFDIIKREYKALGFKSNVTLFDEHDQLALLKELTADVLQ----EDKDLLRELISVI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|330952259|gb|EGH52519.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae Cit 7]
          Length = 174

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 38/145 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ +++  L+         ++ +T T  AA EM  RV  ++   
Sbjct: 5   GGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREMKERVGTLLRGG 64

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                                   GL V T H     I+++   
Sbjct: 65  EGR-------------------------------------GLTVSTFHNLGLNIIRKEHT 87

Query: 150 EANITSHFAIADEEQSKKLIEEAKK 174
                  F+I DE   K L+ +  +
Sbjct: 88  RLGYKPGFSIFDETDVKALMTDIMQ 112


>gi|152987564|ref|YP_001351386.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PA7]
 gi|150962722|gb|ABR84747.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PA7]
          Length = 706

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 42  NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREM 101

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 102 KERVGSLLRGGEGR-------------------------------------GLTVSTFHN 124

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 125 LGLNIIRKEHERLGYKPGFSIFDESDIKALLTDIMQ 160


>gi|149187526|ref|ZP_01865823.1| UvrD/REP helicase [Vibrio shilonii AK1]
 gi|148838406|gb|EDL55346.1| UvrD/REP helicase [Vibrio shilonii AK1]
          Length = 690

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 38/161 (23%)

Query: 20  TKSEQLLASD----------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
              +Q LA D                + A AG+GKT+ L  +  +LL+    P  +L +T
Sbjct: 7   LNHQQQLAVDFGMPKSGNTSNHSPLLIIAGAGTGKTNTLAHKTAQLLVQGVPPEKILLVT 66

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
             + A+AE++ R                          +  +  +++ R     +     
Sbjct: 67  FARRASAELASR------------------------ANRIAEQQLNEQRKQYHPVKLD-- 100

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
              + T H+    ++++      + S F I D   +  +++
Sbjct: 101 --WMGTFHSIAARMLREHAALIGLESDFTIMDRNDAADMLD 139


>gi|148239844|ref|YP_001225231.1| exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803]
 gi|147848383|emb|CAK23934.1| Exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803]
          Length = 1229

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW---- 89
            + A+AG+GKT  L   V+RL++        LL +T T+AAA E+  R+ + +       
Sbjct: 25  LLEASAGTGKTFALAHLVMRLVVERELKLDALLVVTFTEAAADELRDRIGKRLDGALQGL 84

Query: 90  ----------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                     +  +D +L   + +       +   +      +  LE      + TIH F
Sbjct: 85  LCLEQGGDGEAMATDAVLQEWLAEHGRDPTGRKSKASLLLEALEALERAD---ITTIHGF 141

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF------- 192
           C   +++  L++  +   ++ D+ Q+  L+EE         +L  + +            
Sbjct: 142 CRRTLRRQALDSGRSMDLSVDDDPQT--LVEEVAHDLWREQVLTLDPDDVAGLLQSGLRE 199

Query: 193 ----YEILEISNDEDIETLIS-DIISNRTALKLIFFFFSYLWRR-KIIE-KSLWS 240
                E+L +  D  +      ++I   TAL+ +F     +W   + ++   LWS
Sbjct: 200 DTLTAELLRLDGDCGVRIAEDAEVIDTETALRDVF----PIWLEQRWLQVGELWS 250


>gi|294631280|ref|ZP_06709840.1| UvrD/Rep family helicase [Streptomyces sp. e14]
 gi|292834613|gb|EFF92962.1| UvrD/Rep family helicase [Streptomyces sp. e14]
          Length = 988

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 31/184 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I  T  +      P     + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 24  GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 83

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E++ RV + +        +++  +                            G   + 
Sbjct: 84  AGELAERVRKALIRAGVTDPDVIDPDDPP-------------------------GEPVIS 118

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HAF   ++    L   +     +  +    +L     +             L ++F +
Sbjct: 119 TYHAFAGRLLTDHGLRIGLEPSTRLLADATRYQLAARVLRE-----APGPYPALTRSFPD 173

Query: 195 ILEI 198
           ++  
Sbjct: 174 LVSD 177


>gi|257126540|ref|YP_003164654.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
 gi|257050479|gb|ACV39663.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
          Length = 1049

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 74/173 (42%), Gaps = 7/173 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           T +  + A+AG+GKT+ L    +  L+   +   ++ +T TK A AE+  R+ + +   +
Sbjct: 3   TNNIILKASAGTGKTYRLSLEFIANLIRGVNYKNIVVMTFTKKATAEIKERIYDFLHQIA 62

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                    E    +  K +  +  + +++   +++    +++ TI  F   I +     
Sbjct: 63  FDEGNGTELEKNLKEIYKFDNLNKKELQNIYFEMIKNKEDIRISTIDGFTNQIFKNA--- 119

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
             I  +F I + E   K  +E     L  I+   N+E+ + F  I +   ++ 
Sbjct: 120 --IAPYFNIYNYEILDKETDEFYSKVLIKII--ENKEIFEKFKFIFDEKKEKK 168


>gi|152980889|ref|YP_001355282.1| ATP-dependent DNA helicase Rep [Janthinobacterium sp. Marseille]
 gi|151280966|gb|ABR89376.1| ATP-dependent DNA helicase Rep [Janthinobacterium sp. Marseille]
          Length = 686

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 37/155 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++  ++  L+         +  LT T  AA EM
Sbjct: 13  NAPQRDAIKYMDGPCLVLAGAGSGKTRVITTKIASLIEEHGYEARNIAALTFTNKAALEM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +++                                            L V T H+
Sbjct: 73  QERIAKLLKEPKQAK------------------------------------QLTVSTFHS 96

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
               I++Q   E  +   F+I D +    L+++  
Sbjct: 97  LGVKILRQEAKELGLKDRFSIMDSDDCFSLVQDLA 131


>gi|195941303|ref|ZP_03086685.1| DNA helicase (uvrD) [Borrelia burgdorferi 80a]
          Length = 698

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +    + N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SFGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F E  E
Sbjct: 153 FLEKFIEFTE 162


>gi|296130310|ref|YP_003637560.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022125|gb|ADG75361.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 1162

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 19/176 (10%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S    ++ +     T  ++ +   P R + V A AGSGKT  +  RV+ L+      P  
Sbjct: 13  SAVRIAQLVGQHPPTDEQRAVIEAPLRPSLVVAGAGSGKTETMAARVVWLVANGLVAPDQ 72

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA E+S      +           +AE  ++                   +
Sbjct: 73  VLGLTFTRKAAGELSE----RVRRRLRGLVRAAAAEGVELPTD--------------AAV 114

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           ++      V T HA+  +++    L   +     +  E    +L  +  +S    +
Sbjct: 115 VDELARPHVSTYHAYAASLVSDHALRLGVEPGARLLGEAAQWQLASQVVESWAGDL 170


>gi|240142401|ref|YP_002966911.1| putative DNA helicase II [Methylobacterium extorquens AM1]
 gi|240012345|gb|ACS43570.1| putative DNA helicase II [Methylobacterium extorquens AM1]
          Length = 707

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 45/213 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++  A+  +    V A AG+GKT  L  R+  L+      PS+++  T T  AA E+
Sbjct: 15  DPEQRAAAAAVSGGHVVIAGAGTGKTRTLTARIAHLVRERGVDPSSIVGTTFTNKAAREI 74

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  +                                        +    L++ T H+
Sbjct: 75  RERVGAVTG--------------------------------------DAAAALRLGTFHS 96

Query: 139 FCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKS--TLASI-MLDNNEELKKAFYE 194
               I+++    A      F +  + ++ +L++   +    + ++ + D +  L    +E
Sbjct: 97  LGARILRRHASAAGFQDRSFVVLPQSEAAELLQRIVEEQRLVRAVPLPDCDPALSDEDWE 156

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
            L  + D D     +  +  R A + I  + S+
Sbjct: 157 RLSAAADGDRRRETAAFV--REAARAIARWKSW 187


>gi|169767922|ref|XP_001818432.1| ATP-dependent DNA helicase [Aspergillus oryzae RIB40]
 gi|83766287|dbj|BAE56430.1| unnamed protein product [Aspergillus oryzae]
          Length = 998

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 80/220 (36%), Gaps = 45/220 (20%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            +D ++   +++   S P+    V A  GSGKT  L  RV  LL      P  ++C T T
Sbjct: 4   ILDGLN--SAQRAAVSSPSPILQVLAPPGSGKTKTLTARVAYLLAHHGYRPQDVICCTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+ EM  R+ +++                          D  +++ +L          
Sbjct: 62  IKASREMRERLAKLVG-------------------------DRVQSKLIL---------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              T H+ C   +  +     +   F IAD   S  +I    K     + +  N    + 
Sbjct: 87  --GTFHSICRRYLVTYGYLIGLRKGFGIADSGDSLAIIRRIVKRL--QLNIQPNMARGRI 142

Query: 192 FYEILEISNDEDIETLI---SDIISNRTALKLIFFFFSYL 228
            Y+       ED+E      S ++ +R  +++   + S+L
Sbjct: 143 SYQKAHGVTPEDLEAKQMKGSKVLEHREFIQVYQAYESHL 182


>gi|289751888|ref|ZP_06511266.1| superfamily protein I DNA and RNA helicase [Mycobacterium
           tuberculosis T92]
 gi|289692475|gb|EFD59904.1| superfamily protein I DNA and RNA helicase [Mycobacterium
           tuberculosis T92]
          Length = 349

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 14  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 74  LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147


>gi|119776398|ref|YP_929138.1| ATP-dependent DNA helicase Rep [Shewanella amazonensis SB2B]
 gi|119768898|gb|ABM01469.1| ATP-dependent DNA helicase Rep [Shewanella amazonensis SB2B]
          Length = 670

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 38/164 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    ++       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            H     I+++      + + F++ D++ +  L++E  +  L  
Sbjct: 84  FHTLGLEILKREHKAVGLKAGFSLFDDQDTLALLKELTEKELQE 127


>gi|225552190|ref|ZP_03773130.1| DNA helicase [Borrelia sp. SV1]
 gi|225371188|gb|EEH00618.1| DNA helicase [Borrelia sp. SV1]
          Length = 698

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T  E+++ +       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFNKSKNPMLVLAGPGSGKTRVIIAKIVHLIKHMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +      N  S+F I D     K I+        E  K   A I+ D    
Sbjct: 93  SFGSWLLRVYYKDFNKNYDSNFTIWDTNDVVKFIKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F E  E
Sbjct: 153 FLEKFIEFTE 162


>gi|224533218|ref|ZP_03673818.1| DNA helicase [Borrelia burgdorferi WI91-23]
 gi|224511945|gb|EEF82346.1| DNA helicase [Borrelia burgdorferi WI91-23]
          Length = 698

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +    + N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SFGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F E  E
Sbjct: 153 FLEKFIEFTE 162


>gi|156036288|ref|XP_001586255.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980]
 gi|154698238|gb|EDN97976.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 999

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 52/160 (32%), Gaps = 37/160 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           LI    S++   S    +  + A  GSGKTH L  R   LL     P  ++  T T  AA
Sbjct: 7   LIGLNASQRAAVSSQADTLAILAGPGSGKTHTLTSRTAWLLHQGLQPWNIIVATFTVKAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ ++I                                        T   L + T
Sbjct: 67  REMKERIGKLIGNG-------------------------------------TESKLILGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            H+     + ++     I   F IAD   S  +I+   K 
Sbjct: 90  FHSIARRYLARYGHLIGIRKDFGIADSSDSLAIIKRIVKR 129


>gi|226951946|ref|ZP_03822410.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ATCC 27244]
 gi|294649208|ref|ZP_06726646.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837284|gb|EEH69667.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ATCC 27244]
 gi|292824875|gb|EFF83640.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter haemolyticus ATCC
           19194]
          Length = 659

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 41/163 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           ++ ID ++    ++L A+   ++  V A AG GKT  +V R   L+        +  LT 
Sbjct: 4   AKLIDELN--PQQRLAATTVAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPAQQIQILTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+ AA+E+  RV + + A +                                       G
Sbjct: 62  TRRAASEIVTRVEQHMGAQAK--------------------------------------G 83

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           L+  T H FC  ++++ P    +T  F+I D +    +    +
Sbjct: 84  LRASTFHTFCMYLLRRNPRAFGLT-QFSIIDRDDQLLMFRLLR 125


>gi|322698728|gb|EFY90496.1| putative ATP-dependent DNA helicase [Metarhizium acridum CQMa 102]
          Length = 989

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 40/170 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           Q+    ++ +++ +   + ++ PT    + A  GSGKTH L  RV+ L+      P+ ++
Sbjct: 4   QQPETILNSLNEAQRRAVTSNSPT--VAILAGPGSGKTHTLTSRVVWLVQHVGYQPADVI 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             T T  AA EM  R+ + +                                       E
Sbjct: 62  VATFTVKAAREMKGRIGKRLGE-------------------------------------E 84

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + + T H+     +  +     +   F IAD+  S+ +I+   K  
Sbjct: 85  CEKKIVLGTFHSIARRYLAVYGKRIGLDPKFGIADDGDSRAIIQRIIKRL 134


>gi|297521789|ref|ZP_06940175.1| ATP-dependent DNA helicase Rep [Escherichia coli OP50]
          Length = 655

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 43/186 (23%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A AGSGKT ++  ++  L+         +  +T T  AA EM  RV + +       
Sbjct: 1   MVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR----- 55

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                 +AR           GL + T H     I+++      +
Sbjct: 56  ---------------------KEAR-----------GLMISTFHTLGLDIIKREYAALGM 83

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLISDII 212
            ++F++ D+     L++E  +  +     D+   L++    I    ND +      +  I
Sbjct: 84  KANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKNDLKTPSQAAASAI 139

Query: 213 SNRTAL 218
             R  +
Sbjct: 140 GERDRI 145


>gi|291302043|ref|YP_003513321.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571263|gb|ADD44228.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 1041

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 31/161 (19%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           D    T+ +      P R   + A AGSGKT  +  RV+ L+    A P  +L LT T+ 
Sbjct: 17  DEYPPTEQQATAIEAPLRPQLIVAGAGSGKTGTMASRVVWLIANGYARPEQILGLTFTRK 76

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAE++ R+ E +   S L                               + +  G   V
Sbjct: 77  AAAELASRIRERLARLSGLDG-----------------------------VGQLSGEPTV 107

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            T H++   I+ +      +     +    Q+ +L   A +
Sbjct: 108 STYHSYASGIVSEHGPRIGLEPG-TVLSPAQTWQLAYAAVR 147


>gi|152978852|ref|YP_001344481.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes
           130Z]
 gi|150840575|gb|ABR74546.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes
           130Z]
          Length = 1227

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 26/187 (13%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT  +    LRLLL               +L +T T+A+  E+  R+    
Sbjct: 18  LIEASAGTGKTFTMASLYLRLLLQAGDNAFSVPLTVEQILVVTFTEASTEELKERIRARI 77

Query: 86  ---------------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
                          +T + +  +E L  E  ++  +   K D ++A   L    +    
Sbjct: 78  HLAKAQFAAYRETQDLTVFLNTDNEFLVKENGQLTDRFLAKLDPNEAFRRLGFAEQNMDL 137

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             V TIH FC  ++ Q+ + + I  HF +        L+               +  + +
Sbjct: 138 AAVYTIHGFCRRMLMQYAVNSGI--HFNLELVTDETDLLNRLANDFWREQFYGQSFVVTE 195

Query: 191 AFYEILE 197
             +  LE
Sbjct: 196 FIHRKLE 202


>gi|261866905|ref|YP_003254827.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412237|gb|ACX81608.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 671

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      +    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIDKCGYFPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + I                                           GL V T
Sbjct: 61  REMKERVAQSIGKAQSK-------------------------------------GLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++    +    ++  + DE     L++E     L     ++   L++    I
Sbjct: 84  FHTLGFDIIKCEYKQLGFKANMTLFDEHDQMALLKELTADVLQ----EDKGVLRELINRI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|254369409|ref|ZP_04985421.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122359|gb|EDO66499.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 671

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+F  +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSFGLSILKKHFN 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|321310205|ref|YP_004192534.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802049|emb|CBY92695.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
          Length = 693

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 19/206 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           DL +  + ++L    P +   V A AG+GKT +L +R   L+   N  P  +L +T TK 
Sbjct: 10  DLSNLNEQQRLAVLSPLKPILVVAGAGTGKTTVLTKRFEYLVRDCNIDPRNILVITFTKK 69

Query: 74  AAAEMSHRVLEIITAWSHLSDEI-----LSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           AA EM  R+ ++   ++     I      +  I +  G+  +     +A++ +  I+   
Sbjct: 70  AATEMKRRIEKLFPDFNFKDSYISTFHKFAKTILEKSGQDFSICFPKRAQYYIRHIISEE 129

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE------QSKKLIEEAKKSTLASIML 182
             L ++  H     I+++            I  E+      +  +L EE     L    L
Sbjct: 130 LKLPIKAFHR-TAEIVRKLKWA---KQGKKITKEDLIEVVSEMARLSEE---EILNKFPL 182

Query: 183 DNNEELKKAFYEILEISNDEDIETLI 208
           +  + +  ++  +L+  N  D + ++
Sbjct: 183 EWIQNILDSYENLLKGRNQLDFDDIL 208


>gi|312147859|gb|ADQ30518.1| DNA helicase [Borrelia burgdorferi JD1]
          Length = 698

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +    + N  S+F I D +   K ++        E  K   A I+ D    
Sbjct: 93  SFGSWLLRVYYKDFDKNYDSNFTIWDTDDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F E  E
Sbjct: 153 FLEKFIEFTE 162


>gi|192362002|ref|YP_001983850.1| ATP-dependent DNA helicase Rep [Cellvibrio japonicus Ueda107]
 gi|190688167|gb|ACE85845.1| ATP-dependent DNA helicase Rep [Cellvibrio japonicus Ueda107]
          Length = 672

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 43/171 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75
           ++  + E +L  D      V A AGSGKT ++ +++  L+     P+  +  LT T  AA
Sbjct: 4   LNPRQREAVLYID--GPCLVLAGAGSGKTSVITRKIAYLIEQCDIPARHIAALTFTNKAA 61

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++   +                                       GL V T
Sbjct: 62  REMKERVGKLVKGSA-------------------------------------ARGLTVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            H     I+++          F+I D E ++ L++E     L    LDN+ 
Sbjct: 85  FHNLGLNIIRREHKTLGFKPGFSIFDAEDARALLKELM---LKEGELDNDH 132


>gi|294102626|ref|YP_003554484.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261]
 gi|293617606|gb|ADE57760.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261]
          Length = 1173

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 23/163 (14%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L  +T+  Q  A         VSA AG+GKT  L  R + +L+   A  + +L LT T+ 
Sbjct: 14  LKERTQPGQFKAITADAPLVAVSAGAGTGKTWTLAWRFIWILVTGRADTNEILTLTFTEK 73

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM+ R+  ++   +                      ++   +       +      +
Sbjct: 74  AALEMAERIKNLLLQLAM---------------------ELPSQKVFFQKAADRIDEGYI 112

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            TIH+F   ++++  L   +          Q     +EA+++ 
Sbjct: 113 STIHSFSMRVLKECGLATELDPESGTIAPPQESLFWKEAEEAL 155


>gi|50554103|ref|XP_504460.1| YALI0E27269p [Yarrowia lipolytica]
 gi|49650329|emb|CAG80061.1| YALI0E27269p [Yarrowia lipolytica]
          Length = 820

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 36/160 (22%)

Query: 18  SQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   ++   AS    +   + A  G+GKT  LV RV  LL        ++  T T  AA 
Sbjct: 8   NLNAAQYRAASFRKDAVLQIVAGPGTGKTKTLVSRVAHLLEQGVPARGIVVTTFTNKAAD 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+  ++                                            +K  T 
Sbjct: 68  ELKERLGALLADSKT-----------------------------------NFSLVKAGTF 92

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+ C  ++Q+   +  +   F +AD+ Q    ++  +K  
Sbjct: 93  HSICYKLLQKHGDKVGLRPKFGVADDAQQVAHLKRVQKQL 132


>gi|87302917|ref|ZP_01085721.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH
           5701]
 gi|87282413|gb|EAQ74372.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH
           5701]
          Length = 641

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 50/151 (33%), Gaps = 43/151 (28%)

Query: 20  TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
              EQL A   T     V A AG+GKT  +V R+  LL     P  +L +T T+ AAAE+
Sbjct: 8   LNPEQLAAVTSTAPHLVVVAGAGTGKTKTMVARICHLLENGTPPERILAITFTRKAAAEL 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                                           +    +   T H+
Sbjct: 68  VSRIA-------------------------------------FYAGSDIGKRVNASTFHS 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +C  I+       +    + I D E  K ++
Sbjct: 91  WCSRIISN-----DADGSYTIIDPEDQKDMM 116


>gi|85710882|ref|ZP_01041943.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina
           baltica OS145]
 gi|85695286|gb|EAQ33223.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina
           baltica OS145]
          Length = 672

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 38/160 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++ +++  L+  N +    +  +T T  AA EM
Sbjct: 3   NDRQRQAVHYVQGPLLVLAGAGSGKTRVITEKIAYLIRENIYTARQIAAVTFTNKAAREM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + + A                                         GL V T H 
Sbjct: 63  RERVNQTMGAGG-------------------------------------ARGLTVSTFHT 85

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
               I+++      +   F++ D++ +  L+    +    
Sbjct: 86  LGLNIIRRELSALGLKPGFSLFDDQDTYALLNGLTEDAWE 125


>gi|51598602|ref|YP_072790.1| DNA helicase [Borrelia garinii PBi]
 gi|51573173|gb|AAU07198.1| DNA helicase [Borrelia garinii PBi]
          Length = 698

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 50/187 (26%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            E+++ S       V A  GSGKT +++ +++ L+   N +P+ +L LT T  AA EM+ 
Sbjct: 15  QEKIVFSKSKNPILVLAGPGSGKTRVIIAKIVYLIKNMNINPNEILALTFTNKAANEMND 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                            L +QT H+F 
Sbjct: 75  RINDLLKFDKK---------------------------------------LHIQTFHSFG 95

Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA--------KKSTLASIMLDNNEELKK 190
             +++ +    + N  S+F I D     K ++E          K   A I+ D      +
Sbjct: 96  SWLLRAYYNDFDRNYDSNFTIWDTNDVVKFVKEINLAPNFEMAKHIAALILKDKEHFFLE 155

Query: 191 AFYEILE 197
            F +  E
Sbjct: 156 KFIKFTE 162


>gi|78779497|ref|YP_397609.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|78712996|gb|ABB50173.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus
           marinus str. MIT 9312]
          Length = 1208

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 14/167 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A+AG+GK+  L   VLR +L     P  +L L+ TK   +E+  ++   +  +  L 
Sbjct: 14  LVEASAGTGKSFTLAHLVLRNVLEKKIKPDEILLLSFTKNTCSELRDKI---LLRFQDLK 70

Query: 94  DEILSAEITKIQGKKPN--------KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
             + +   +KI     +        +    K    +   +     L+V T H+FC  I+ 
Sbjct: 71  LYLQNHNESKIDNTLKDWYLKFKEKEKSKKKIISEIDNFVNEIYKLQVTTFHSFCNNIIN 130

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++ +E  +T    I +   +  L ++   +      L+ N EL  A 
Sbjct: 131 EYSIEIGVTQDPYIENNIDN--LYKDVIDNLWIDSFLNLNHELISAV 175


>gi|46128055|ref|XP_388581.1| hypothetical protein FG08405.1 [Gibberella zeae PH-1]
          Length = 1060

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L S  ++++   +    +  + A  GSGKTH L  RV+ L+      PS ++  T T  A
Sbjct: 10  LQSLNEAQRRAVTSTASTVAILAGPGSGKTHTLTSRVVWLIQRVGYRPSDVIVATFTVKA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ + +                                       E    + + 
Sbjct: 70  AREMKERIGKTLGE-------------------------------------ECEKKIVLG 92

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+     +  +     + S F IAD+  S+ +I+   K  
Sbjct: 93  TFHSIARRYLSIYGNRIGLDSKFGIADDGDSRAIIQRICKRL 134


>gi|294668891|ref|ZP_06733981.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309188|gb|EFE50431.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 1189

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
             +A + A+AG+GKT+ +     RL+L    P   +L +T TKAA AE+  R+   +   
Sbjct: 16  QGTALIEASAGTGKTYGIAALFARLILLEKLPVDKVLVVTFTKAATAELKTRLRGRLDEA 75

Query: 90  -----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                    DE     +  +  +   +    +    L   L       + TIH FC+ ++
Sbjct: 76  FRRIRGDKMDEEADGFMRGLLEQAARQETPERLELRLKAALSQFDNAAIYTIHGFCQRLL 135

Query: 145 QQFPLEANITSHFAIADEEQSKKL 168
             +     +    + AD+   ++L
Sbjct: 136 GDYAFLCQVPFETSSADDNDKREL 159


>gi|224532195|ref|ZP_03672827.1| DNA helicase [Borrelia valaisiana VS116]
 gi|224511660|gb|EEF82066.1| DNA helicase [Borrelia valaisiana VS116]
          Length = 698

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 42/157 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPILVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNARINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172
           +F   +++ +    + N  S+F I D     + I++ 
Sbjct: 93  SFGSWLLRFYYKDFDKNYDSNFTIWDTNDVARFIKQI 129


>gi|330812568|ref|YP_004357030.1| putative ATP-dependent DNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380676|gb|AEA72026.1| putative ATP-dependent DNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 669

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 51/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++ A                                         GL V T H 
Sbjct: 65  KERVGGLLRAGEGR-------------------------------------GLTVCTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHARLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|262193492|ref|YP_003264701.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262076839|gb|ACY12808.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 1161

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 46/173 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++  A        + A  G+GKT  L  R+  L+      P+  L +T T  A
Sbjct: 496 LSALDPEQRRAAECVHGPLLIVAGPGTGKTRTLTHRIAHLVEDIGVEPAACLAITFTNRA 555

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+  ++                                           G+ V 
Sbjct: 556 AGELRERLDALLPGAG--------------------------------------AGVAVH 577

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-------KKSTLASI 180
           T H+    I+++  + A +   F +A E +   L+ +A        +S LA +
Sbjct: 578 TFHSLALRILRENRVRAGLHRGFRVAAESECVALLADALGCLPAKARSVLARL 630


>gi|224372542|ref|YP_002606914.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH]
 gi|223589142|gb|ACM92878.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH]
          Length = 665

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 38/188 (20%)

Query: 14  IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D +++    Q   A+    +  + A AGSGKT  +  R+  LL     PS  L LT T 
Sbjct: 1   MDFLNELNDAQKEAATHIDGALLILAGAGSGKTKTITTRLAYLLSLGIDPSNTLTLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA+EM  R L +I   +     +                                    
Sbjct: 61  KAASEMRERALRMIDNNAAHPPLL------------------------------------ 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H F    ++ +    N  + F I D +  KK+++        S +     + K +F
Sbjct: 85  -STFHKFGLMFLKLYIHLINRKNTFVIIDSDDQKKILKSISTDLPMSFVSKEISKYKNSF 143

Query: 193 YEILEISN 200
               E+ +
Sbjct: 144 LNADEVFS 151


>gi|325266415|ref|ZP_08133092.1| exodeoxyribonuclease V beta subunit [Kingella denitrificans ATCC
           33394]
 gi|324981858|gb|EGC17493.1| exodeoxyribonuclease V beta subunit [Kingella denitrificans ATCC
           33394]
          Length = 1237

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 20/177 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +     RL LL       +L +T TKAA AE+  R+   +     + 
Sbjct: 36  LIEASAGTGKTWNIAALFARLVLLEQMPVDKILVVTFTKAATAELKTRLRARLNDALRVL 95

Query: 94  DEILSAE----------------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
            +    +                +T++  K        +    L   +       + TIH
Sbjct: 96  QKYGDGQDIAELCQKYAPDAAAFLTELLQKAMTNESPERLVIRLKAAISQFDHASIYTIH 155

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            FC+ ++Q F     +   F++  +E+  +    A +    + +  +++ L +  Y 
Sbjct: 156 GFCQRVLQDFAFYCQVP--FSLEMDEEQHRQDYVAAQDYWRATVA-HDDTLAQLVYR 209


>gi|163854653|ref|YP_001628951.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804]
 gi|163258381|emb|CAP40680.1| ATP-dependent DNA helicase [Bordetella petrii]
          Length = 685

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++  + E +L  D      V A AGSGKT ++ Q++  LL         ++ LT T  A
Sbjct: 10  GLNPAQKEAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++                          D   A+           GL + 
Sbjct: 68  AREMDERVKTLV--------------------------DRKLAK-----------GLTIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    ++++    A +   F+I D + +  +I+E   +T
Sbjct: 91  TFHSLGVRMLREEARHAGLKPQFSILDADDAMAIIQELLATT 132


>gi|149194507|ref|ZP_01871603.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2]
 gi|149135251|gb|EDM23731.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2]
          Length = 673

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 14/205 (6%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + L      +   A+ P     V A+AG+GKT  +V R+  LL     P  +L LT T  
Sbjct: 1   MPLSKLNNEQFQAATAPFGFNLVIASAGTGKTSTIVGRIAHLLENGLKPEEILLLTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  RV ++I    ++      +   K   K      + + + L I           
Sbjct: 61  AAIEMKERVSQVIPYAKNIEAGTFHSVSYKWLKKLNKNIVLKQPKDLKILFKSIYDKRD- 119

Query: 134 QTIHAFCEAIM---QQFP--LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
                    ++   + +      ++ S F  ++EE     + +   S     ++   E++
Sbjct: 120 ------FNRVLGEEKPYSANYLFDLYSLFINSNEEDFISFLSKKAPSQEEYALI--YEDI 171

Query: 189 KKAFYEILEISNDEDIETLISDIIS 213
              +  + +  N  D  +L+ ++I+
Sbjct: 172 FDEYERVKKEHNLVDFNSLLLEMIN 196


>gi|293390017|ref|ZP_06634351.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950551|gb|EFE00670.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 1234

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 15/149 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---ANAHP-----STLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL    N  P       +L +T T+ A  E+  ++ E  
Sbjct: 29  LIEASAGTGKTYTMGSLYLRLLLQAGENVFPHSLNVEQILVVTFTEMATEELKRKIRERI 88

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA+    D  +  +   ++      +D   A   L    +      + TIH F
Sbjct: 89  YAAKQKLTAYQQTQDPAVFEQDEFLRQLADTITDFPLAIQRLTLAEQNMDLAAIYTIHGF 148

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKL 168
           C  ++ Q+   + I  +  ++ EE    L
Sbjct: 149 CRRMLMQYAFNSGIHFNLELSGEEDELLL 177


>gi|162448185|ref|YP_001621317.1| DNA helicase II [Acholeplasma laidlawii PG-8A]
 gi|161986292|gb|ABX81941.1| DNA helicase, UvrD/REP type [Acholeplasma laidlawii PG-8A]
          Length = 382

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 50/193 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            K ++L  +   R  ++ A AGSGKT ++V+R+ RL+L    P+ +LC+T T  A  EM 
Sbjct: 4   NKEQELAVTSNERCIFLIAGAGSGKTRVIVERIKRLILNGVDPNEILCITFTNKATDEMK 63

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+     A                                              T H +
Sbjct: 64  ERLKGYDVATH--------------------------------------------TFHGY 79

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++        I   F   +E    ++++ A      S+      ++   +   L   
Sbjct: 80  CYQVLSSH----KIFQVFEYNNEFSPDEVLKVATYK--NSLKTSKKPKIYDTYEAYLNTR 133

Query: 200 NDEDIETLISDII 212
           N  D + L+ +  
Sbjct: 134 NLLDFDDLMIEAF 146


>gi|312602470|ref|YP_004022315.1| exodeoxyribonuclease V subunit beta [Burkholderia rhizoxinica HKI
           454]
 gi|312169784|emb|CBW76796.1| Exodeoxyribonuclease V beta chain (EC 3.1.11.5) [Burkholderia
           rhizoxinica HKI 454]
          Length = 1245

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH--- 91
           + A+AG+GKT  +    LRLLL  +     +L +T TKAA AE+  R+   +        
Sbjct: 22  IEASAGTGKTWNICALYLRLLLEKDLQADQILVVTFTKAATAELHERIRARLMQLEQALA 81

Query: 92  ----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L D  ++  I ++      ++   +A   +   L       + TIHAFC+  +Q+ 
Sbjct: 82  HGVALDDPFVTGLIGRLVDGDAPETATQRALKRIRRALHGFDQAAIHTIHAFCQRALQEA 141

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           P  A     FA+  E     L  +         +           + ++         T+
Sbjct: 142 PFAA--AMPFALETEADDTTLRFDVAAQFWRERVEPEAARTPGFAHWLVAHGAGP---TV 196

Query: 208 ISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
           +  +++ R    L    ++     + ++ ++    
Sbjct: 197 LQALLAQRLKKPLAELVWTDPACDETVDTAIDHFG 231


>gi|15600489|ref|NP_253983.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO1]
 gi|107104399|ref|ZP_01368317.1| hypothetical protein PaerPA_01005475 [Pseudomonas aeruginosa PACS2]
 gi|116053444|ref|YP_793770.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894399|ref|YP_002443269.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa LESB58]
 gi|254238009|ref|ZP_04931332.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa C3719]
 gi|254243817|ref|ZP_04937139.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 2192]
 gi|296392155|ref|ZP_06881630.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAb1]
 gi|9951611|gb|AAG08681.1|AE004942_4 ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO1]
 gi|115588665|gb|ABJ14680.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169940|gb|EAZ55451.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa C3719]
 gi|126197195|gb|EAZ61258.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 2192]
 gi|218774628|emb|CAW30445.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa LESB58]
          Length = 669

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRGGEGK-------------------------------------GLTVSTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHERLGYKPGFSIFDESDIKALLTDIMQ 123


>gi|56964348|ref|YP_176079.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16]
 gi|56910591|dbj|BAD65118.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16]
          Length = 863

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 75/212 (35%), Gaps = 37/212 (17%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---------NAHPSTLLC 67
           +    +++           V+A AGSGKT +L ++++ ++            A  + +  
Sbjct: 1   MQFNSAQKQAIESKQPLVVVAAGAGSGKTRVLTEKIVSIIDEHFHDKGSNYGAPINEIAA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T+ AA EM  R+   +                   G+K   +   + +   +   E 
Sbjct: 61  ITFTEKAAREMKERLASRM-------------------GEKAEAAGNREEKRFWLAQQEE 101

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                + T H FC  ++ ++   A      A+ DE ++  +  E  +         N   
Sbjct: 102 VETAMIATFHRFCRQLLSRYSRYAEENGELAVLDETEAAMIKAELVEQLCKERQFAN--- 158

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALK 219
                 E+ ++     +  L   +++   A++
Sbjct: 159 ------ELNQLRGGLSLFALKRSLVAVHDAVR 184


>gi|298526678|ref|ZP_07014087.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|298496472|gb|EFI31766.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
          Length = 921

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 14  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 74  LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147


>gi|312963830|ref|ZP_07778301.1| ATP-dependent DNA helicase RepA [Pseudomonas fluorescens WH6]
 gi|311281865|gb|EFQ60475.1| ATP-dependent DNA helicase RepA [Pseudomonas fluorescens WH6]
          Length = 669

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLKGGEGR-------------------------------------GLTVCTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHARLGYKPGFSIFDETDVKALMTDIMQ 123


>gi|308234985|ref|ZP_07665722.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14018]
 gi|311115083|ref|YP_003986304.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019]
 gi|310946577|gb|ADP39281.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019]
          Length = 1390

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 44/213 (20%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           + +N+      T +     + + ++ +   +   + A AGSGKT+ + +RV+ L+ +   
Sbjct: 1   MNNNNVNAVKSTPNSAPSLEQKNVIEAPINQDVLIVAGAGSGKTYTMTRRVIHLIKSKVP 60

Query: 62  PSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           P ++L LT T  AAAE+  RV  E+  + ++ +   L  E                    
Sbjct: 61  PESILGLTFTNKAAAELLSRVSAEVSASGANGAKSFLKPE-------------------- 100

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                       V T  AF ++I++++ L      +     +  + ++I+      L   
Sbjct: 101 ------------VMTYDAFFQSIVRRYGLLVGFNQNTMPLSDAGAMEIIKSIIGKYL--- 145

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
             DN +   K   ++       D +TL SD++ 
Sbjct: 146 --DNPQNHNKNLNKLY------DFDTLCSDVMK 170


>gi|119775036|ref|YP_927776.1| exodeoxyribonuclease V subunit beta [Shewanella amazonensis SB2B]
 gi|119767536|gb|ABM00107.1| exodeoxyribonuclease V, beta subunit [Shewanella amazonensis SB2B]
          Length = 1224

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 18/193 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            + A+AG+GKT+ +    LRLLL            +L +T T AA +E+  R+   I   
Sbjct: 19  LIEASAGTGKTYTIANLYLRLLLGIGQQRPFKVEEILVVTFTNAATSELRDRIRRRIQDG 78

Query: 90  SH--LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L +      +T++    P++    +   L    L+T     + TIH FC+ ++   
Sbjct: 79  FRLCLGEPSEDRFLTQLLHALPDRQLALRQLDL---ALKTLDEAAIYTIHGFCQRVLSDM 135

Query: 148 PLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
             E+ +   S F + D E    L+  A      +     + ++        + ++ + +E
Sbjct: 136 AFESALLFESEFTLDDSE----LLSMAAADFWRAHCYPLSADIAAMVQ--AKFASPKALE 189

Query: 206 TLISDIISNRTAL 218
             +  ++  R A+
Sbjct: 190 QELKSLLGARDAV 202


>gi|307128610|ref|YP_003880640.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI]
 gi|306483072|gb|ADM89942.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI]
          Length = 701

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 39/154 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            + ++++T+ + +   D  R   V A AGSGKT +L+ R++ L+ +      +L LT TK
Sbjct: 1   MLSILNKTQYKAVTTID--RPTMVIAGAGSGKTRVLIYRLIHLIKSGVKSRNILALTFTK 58

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +A E+ +R+  +I                                            + 
Sbjct: 59  KSANEIKYRLSSLIDK-------------------------------------NELDKIS 81

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
           + T H+    ++++         ++ I D   S+
Sbjct: 82  IGTFHSIFAKLLRKNSYLIGYKKNYIIYDRYDSE 115


>gi|293610237|ref|ZP_06692538.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827469|gb|EFF85833.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 684

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 75/227 (33%), Gaps = 48/227 (21%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q   A+   ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 31  LINELNAQQKKAATTSAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 90

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 91  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 112

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H FC  ++++ P    +   F+I D +    +        L     DN         +
Sbjct: 113 TFHTFCMYLLRRNPQAFGLN-QFSIIDRDDQLLMFR-----LLRGKDKDNVLPKAAELCD 166

Query: 195 ILEISNDEDI---ETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +   + +      E LI  +         I        +RK     L
Sbjct: 167 LYSYARNTQTKLSEALIKQLPDAYEHKTQIAELMKTYEQRKRERNFL 213


>gi|240948326|ref|ZP_04752712.1| ATP-dependent DNA helicase [Actinobacillus minor NM305]
 gi|240297365|gb|EER47906.1| ATP-dependent DNA helicase [Actinobacillus minor NM305]
          Length = 672

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           +     +Q        +  V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNDQQQQAVEYVKGACLVLAGAGSGKTRVIINKIAHLIAYCGYSPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                       E   GL + T
Sbjct: 61  REMRERVAHSIGK-------------------------------------EKSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        S   + DE     L+    K  L   + ++ + LK+    I
Sbjct: 84  FHTLGFEILKREYKLLGFKSGMTLFDEHDQLALL----KHLLPETVSEDKDLLKQLISAI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|330443998|ref|YP_004376984.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58]
 gi|328807108|gb|AEB41281.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58]
          Length = 637

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 38/159 (23%)

Query: 18  SQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++    QL A + P R   V A AG+GKT +++ R+L L+     P  +L +T T  AA 
Sbjct: 5   AELNDAQLSAVTSPLRPVLVLAGAGAGKTRVVIYRILHLIHQGIAPREILAVTFTNKAAK 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R++                                                 V T 
Sbjct: 65  ELKERIMHQCPQA-------------------------------------QYDLPMVCTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           H+    I+++     N  ++F I D+  ++KLI+   + 
Sbjct: 88  HSLGVFILRRSLHLLNRENNFIIYDQGDAEKLIKRCLQQ 126


>gi|262374135|ref|ZP_06067412.1| ATP-dependent DNA helicase PcrA [Acinetobacter junii SH205]
 gi|262311146|gb|EEY92233.1| ATP-dependent DNA helicase PcrA [Acinetobacter junii SH205]
          Length = 659

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 41/163 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           ++ ID ++    ++  A+   ++  V A AG GKT  +V R   L+        +  LT 
Sbjct: 4   AKLIDELN--PQQKQAATTVAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPAQQIQILTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+ AA+E+  RV + + A S                                       G
Sbjct: 62  TRRAASEIVTRVEQHMGAQSK--------------------------------------G 83

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           L+  T H FC  ++++ P    +T  F+I D +    +    +
Sbjct: 84  LRASTFHTFCMYLLRRNPRAFGLT-QFSIIDRDDQLLMFRLLR 125


>gi|261868104|ref|YP_003256026.1| exodeoxyribonuclease V subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413436|gb|ACX82807.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 1221

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 15/149 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---ANAHP-----STLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL    NA P       +L +T T+ A  E+  ++ E  
Sbjct: 16  LIEASAGTGKTYTMGSLYLRLLLQAGENAFPHVLNVEQILVVTFTEMATEELKRKIRERI 75

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA+    D  +  +   ++    + +D   A   L    +      + TIH F
Sbjct: 76  YDAKQKLTAYQQTQDSAVFEQDEFLRQLADSITDFPLAIQRLTLAEQNMDLAAIYTIHGF 135

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKL 168
           C  ++ Q+   + I  +  ++ EE    L
Sbjct: 136 CRRMLMQYAFNSGIHFNLELSGEEDELLL 164


>gi|308804119|ref|XP_003079372.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri]
 gi|116057827|emb|CAL54030.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri]
          Length = 859

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 41/169 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           E  E + +     +++     P  +  V A  GSGKTH+L+ RV  L+      P  +LC
Sbjct: 63  EALEPVHVRGLNDAQRAAVLAPVGATRVLAGPGSGKTHVLIGRVAHLIHEEKTPPREILC 122

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA E+  R+ + I        E+ + EIT                         
Sbjct: 123 ITFTNKAAKELRERLRDKIG-------EVAAKEITA------------------------ 151

Query: 128 PGGLKVQTIHAFCEAIMQQFPLE---ANITSHFAIADEEQSKKLIEEAK 173
                  T H+    ++++          T  F I D + SK++++   
Sbjct: 152 ------GTFHSVAARMLRRHGERIPGIGRTGEFTIYDADDSKQIVQSVL 194


>gi|85859318|ref|YP_461520.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
 gi|85722409|gb|ABC77352.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
          Length = 657

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID   +   EQ  +  +      V A AGSGKT  L  RV RL+     P  +L  T T
Sbjct: 1   MIDYEKELNEEQCHVVLEAGGPMLVLAGAGSGKTRTLTYRVARLVETGIKPERILLATFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA  M +RV E++                                            L
Sbjct: 61  NKAARSMLNRVRELVPV--------------------------------------DLSRL 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
              T H     +++        T  F+I D E +++LI
Sbjct: 83  SGGTFHHNGHFMLRAHAERLGYTRSFSILDTEDARQLI 120


>gi|159903624|ref|YP_001550968.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9211]
 gi|159888800|gb|ABX09014.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9211]
          Length = 1265

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 14/155 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI----ITAW 89
            + A+AG+GKT  L   VLRLL    H  + +L ++ T+A+AAE+  R+       +   
Sbjct: 20  LIEASAGTGKTFSLAHLVLRLLTEKQHSINEILVVSFTRASAAEIKARITNRLIFALKGL 79

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHL-----LITILETPGGLKVQTIHAFCEAIM 144
            + S E  +  I ++  +   K      R +     L+  L       + TIH FC   +
Sbjct: 80  ENPSKEYKNKHIDQVLDEWLKKFINDIQRRMHWVNHLLDALTNIDQADITTIHGFCRRTL 139

Query: 145 QQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTL 177
           Q+  +E+   I  H     E + KKL+ E      
Sbjct: 140 QRDVIESGSAIEPHP--IAEGEIKKLVNEIAHEYW 172


>gi|322711061|gb|EFZ02635.1| putative ATP-dependent DNA helicase [Metarhizium anisopliae ARSEF
           23]
          Length = 992

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 39/168 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           H ETI L S  ++++   +  + +  + A  GSGKTH L  RV+ L+      P+ ++  
Sbjct: 5   HPETI-LNSLNEAQRRAVTSNSPTVAILAGPGSGKTHTLTSRVVWLVQHVGYQPADVIVA 63

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R+ + +                                       E  
Sbjct: 64  TFTVKAAREMKGRIGKRLGE-------------------------------------ECE 86

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + T H+     +  +     +   F IAD+  S+ +I+   K  
Sbjct: 87  KKIVLGTFHSIARRYLAVYGKRIGLDPKFGIADDGDSRAIIQRIIKRL 134


>gi|310820608|ref|YP_003952966.1| ATP-dependent DNA helicase, uvrd/rep family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393680|gb|ADO71139.1| ATP-dependent DNA helicase, UvrD/REP family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1213

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 16/184 (8%)

Query: 44  KTHILVQRVLRLLLANAH------PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS--DE 95
           KT+ LV  VL LL           P+ L  LT T  AAAEM  R    + A +     + 
Sbjct: 23  KTYSLVTMVLHLLAGAREAAPALRPAKLCMLTFTDKAAAEMRARTRSRLDALAQAEAKEP 82

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L A + ++    P +      R  L       G   + T H+ C  ++++ P    I  
Sbjct: 83  ELRASLERLDRPFPAQDAWRAMREEL-------GSATLGTFHSLCGQLLRRAPPGLGIDP 135

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
            F + DE ++  L+++  +  +   +   +  + +   E+    +    + L++ +    
Sbjct: 136 SFEVLDELEASNLVQDVCERVVLDALEAGDARVSELCQELTFSGSGF-ADGLVASLRQVY 194

Query: 216 TALK 219
             L+
Sbjct: 195 AKLR 198


>gi|293391274|ref|ZP_06635608.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951808|gb|EFE01927.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 671

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +Q      +    V A AGSGKT +++ ++  L+      P  +  +T T  AA
Sbjct: 1   MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIDKCGYFPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + I                                           GL V T
Sbjct: 61  REMKERVAQSIGKAQSK-------------------------------------GLIVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++    +    ++  + DE     L++E     L     ++   L++    I
Sbjct: 84  FHTLGFDIIKGEYKQLGFKANMTLFDEHDQMALLKELTADVLQ----EDKGVLRELINRI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|86158934|ref|YP_465719.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775445|gb|ABC82282.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1192

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 20/140 (14%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEI 85
                VSA AGSGKT  LV+  +RLL  +A      P  L  +T T+ AA E+       
Sbjct: 18  EAPTAVSAGAGSGKTTALVELCVRLLEGSALGSPCEPRELAAITFTEKAAQELEE----- 72

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                     +  A   + +  +    +  +AR  L   L     + V TIH FC  +++
Sbjct: 73  ---------RLRGAVAARARAAREADPESPEARAWLER-LHGLDAMAVGTIHGFCGRLLR 122

Query: 146 QFPLEANITSHFAIADEEQS 165
           +   EA +    A+ +E+++
Sbjct: 123 EHAPEAGLDPEAAVLEEDRA 142


>gi|33151764|ref|NP_873117.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
 gi|33147985|gb|AAP95506.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
          Length = 672

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 44/218 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +   + +Q        +  V A AGSGKT +++ ++  L+   N  P  +  +T T  AA
Sbjct: 1   MKLNQQQQQAVEYVNGACLVLAGAGSGKTRVIINKIAYLIAHCNYTPKQIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV   I                                       E   GL + T
Sbjct: 61  REIRERVAHSIGK-------------------------------------ENSKGLTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++        +   + DE     L+    K  L   + ++ + LK    +I
Sbjct: 84  FHTLGFEILKREYKLLGFKAGMTLFDEHDQMALL----KHLLPEKVTEDKDLLKALMSQI 139

Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232
               ND    E +I+   S R  +    F+  Y  + K
Sbjct: 140 SYWKNDLLSPEMVINHCHSERDRI-FSNFYQLYQNQLK 176


>gi|294495717|ref|YP_003542210.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219]
 gi|292666716|gb|ADE36565.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219]
          Length = 1018

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 39/149 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I    S+            + A  GSGKT  + ++V+ ++     P  +L LT ++ AA 
Sbjct: 4   IKLNPSQSQAVDYTDGPLLILAGPGSGKTLTITEKVVNIVDEGFSPDRILALTFSEKAAG 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   I   S                                       G+ V T 
Sbjct: 64  EMEERIENRIGESS---------------------------------------GITVSTF 84

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQS 165
           H++C  ++++F L A I     +  +E S
Sbjct: 85  HSYCNDLLKEFSLYAGINQGTRLISQEHS 113


>gi|120536959|ref|YP_957017.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
 gi|120326793|gb|ABM21102.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
          Length = 715

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 40/181 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +S T+ ++ +A+    +  V A AGSGKT  LVQRV RL+  N +P +++ +T ++ AA 
Sbjct: 4   VSLTQQQEKIANHVDGALIVLAGAGSGKTATLVQRVGRLIDQNINPRSIMLVTFSRKAAK 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ +                                              + V T 
Sbjct: 64  EIKVRLSKAFGFDGE--------------------------------------DVVVDTF 85

Query: 137 HAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           H F    ++Q+     +     + I  E + ++ + +  K       ++  E  KK   +
Sbjct: 86  HGFGFRFLRQYKDMFGLKEDQDWVILTENEQRRFMNDIGKPLADKANVEAKELRKKLKED 145

Query: 195 I 195
            
Sbjct: 146 F 146


>gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep [Herbaspirillum seropedicae SmR1]
 gi|300076390|gb|ADJ65789.1| ATP-dependent DNA helicase rep protein [Herbaspirillum seropedicae
           SmR1]
          Length = 690

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 37/155 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K +            V A AGSGKT ++ Q++  L+         +  LT T  AA EM
Sbjct: 9   NKPQSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +++                          D  +A+HL            V T H+
Sbjct: 69  QERIAKLLK-------------------------DPKQAKHL-----------TVSTFHS 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
               I++Q      +   F+I D +    L++E  
Sbjct: 93  LGVKILRQESQHLGLKDRFSIMDSDDCFSLVQELA 127


>gi|322418722|ref|YP_004197945.1| UvrD/REP helicase [Geobacter sp. M18]
 gi|320125109|gb|ADW12669.1| UvrD/REP helicase [Geobacter sp. M18]
          Length = 678

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 38/165 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71
            +DL      +         +  V A AGSGKT ++  R+  L+L    P   +L +T T
Sbjct: 1   MLDLSRLNPEQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLILNKKVPADRVLAVTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+ EM  RV  ++                                           G+
Sbjct: 61  NKASKEMKERVEHLVGRKESK-------------------------------------GI 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+    ++++         +F+I        L+ +  +  
Sbjct: 84  VLSTFHSLGVRVLKRDIERLGYKKNFSIYSTADQVGLVRQIVREV 128


>gi|119953139|ref|YP_945348.1| DNA helicase II [Borrelia turicatae 91E135]
 gi|119861910|gb|AAX17678.1| DNA helicase II [Borrelia turicatae 91E135]
          Length = 697

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 42/154 (27%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            +Q++  D      V A  GSGKT ++  ++  L+      P  +L LT T  AA EM+ 
Sbjct: 15  QKQIVLDDTKNPILVLAGPGSGKTRVITAKIAHLIKEMQLKPEEILALTFTNKAANEMNL 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R                                       L  + +    L +QT H+F 
Sbjct: 75  R---------------------------------------LNYLFDFNKALHIQTFHSFG 95

Query: 141 EAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEA 172
             +++ +  E +    S+F I D     K +++ 
Sbjct: 96  AWLLRLYFKEFDKNYDSNFTIWDTNDVVKFVKQI 129


>gi|134096520|ref|YP_001101595.1| Rep helicase, a single-stranded DNA-dependent ATPase [Herminiimonas
           arsenicoxydans]
 gi|133740423|emb|CAL63474.1| ATP-dependent DNA helicase Rep [Herminiimonas arsenicoxydans]
          Length = 684

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 39/157 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++  + E +   D      V A AGSGKT ++ Q++  L+         +  LT T  A
Sbjct: 11  GLNAPQREAIKYMD--GPCLVLAGAGSGKTRVITQKIAHLIEDCGYEARHVAALTFTNKA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++                                            L V 
Sbjct: 69  ALEMQERIAKLLKEPKQAK------------------------------------QLTVS 92

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
           T H+    I++Q   E  +   F+I D +    L+++
Sbjct: 93  TFHSLGVKILRQEAKELGLKDRFSIMDSDDCFSLVQD 129


>gi|254483238|ref|ZP_05096470.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2148]
 gi|214036461|gb|EEB77136.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2148]
          Length = 665

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 43/188 (22%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +SQ    Q  A         V A AGSGKT ++ +++  L+       S +  +T T  A
Sbjct: 1   MSQLNPRQREAVRYIDGPMLVLAGAGSGKTSVITRKIAYLVETCGIRASRIAAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++                                        +  GL V 
Sbjct: 61  AREMKERVGKLLGT-------------------------------------HSTEGLTVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     I++       + S F+I D + ++ LI    K  L      + ++      +
Sbjct: 84  TFHQLGLKIIRTERKLLGLKSGFSIFDGQDTQTLI----KDLLIQEHGSDGDQASTIQNQ 139

Query: 195 ILEISNDE 202
           I    ND 
Sbjct: 140 ISNWKNDR 147


>gi|193214838|ref|YP_001996037.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
 gi|193088315|gb|ACF13590.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
          Length = 700

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 39/160 (24%)

Query: 18  SQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           S+  S Q  A +    +  V A AG+GKT  L  RV  L+ +    S +L LT T+ AA 
Sbjct: 31  SELNSAQFEAVTTTDGALLVVAGAGTGKTKTLTYRVGYLIESGVPASDILLLTFTRRAAQ 90

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R           +  I  +  ++IQG                            T 
Sbjct: 91  EMLAR-----------AAAICDSRCSQIQG---------------------------GTF 112

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           HAF   +++    +  +  +F + D+  +++ ++  + + 
Sbjct: 113 HAFAHKLLRLHASQIGLAENFTVLDQADAEETLDIVRTAL 152


>gi|301165619|emb|CBW25190.1| putative helicase/endonuclease [Bacteriovorax marinus SJ]
          Length = 1106

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 47/241 (19%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-----------------LLANAHPS 63
             EQ LA + T    +SA AGSGKT +LV+ V+ L                 L   ++ S
Sbjct: 5   NDEQKLAIEHTGGVLLSAGAGSGKTFVLVEHVIYLASKFISENKKDDLLEFELSIQSYFS 64

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            ++ +T TK AA E+  R++  + A     +  +                        + 
Sbjct: 65  KIVLMTFTKKAAGEIYERLIHRVEAQIEYVESDI---------------------EYWVV 103

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           +      + + TIH FC  ++ Q  L   ++S  AI  E +      E           +
Sbjct: 104 VKNAIDFMTISTIHGFCYKLIGQ-GLIPGLSSSVAIISESE----YREKISKLYERWFEN 158

Query: 184 NNEEL-KKAFYEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240
           + EE+  + F +I+ +++++ I +++S   S   R   K + F  S+    K     +WS
Sbjct: 159 HIEEIPSEEFRKIISLNSNQIINSMLSVFGSPEIRLMWKRLDF-DSFDAEVKEAWPKIWS 217

Query: 241 I 241
           +
Sbjct: 218 L 218


>gi|299771676|ref|YP_003733702.1| putative ATP-dependent DNA helicase [Acinetobacter sp. DR1]
 gi|298701764|gb|ADI92329.1| putative ATP-dependent DNA helicase [Acinetobacter sp. DR1]
          Length = 659

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 77/224 (34%), Gaps = 51/224 (22%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q   A+   ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 6   LINELNAQQKKAATTSAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 66  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H FC  ++++ P    +   F+I D +    +        L     DN         +
Sbjct: 88  TFHTFCMYLLRRNPQAFGLN-QFSIIDRDDQLLMFR-----LLRGKDKDNVLPKAAELCD 141

Query: 195 ILEISNDEDI---ETLIS---DIISNRTALKLIFFFFSYLWRRK 232
           +   + +      E LI    D   ++  +  +   +    R +
Sbjct: 142 LYSYARNTQTKLSEALIKQLPDAYEHKNQIADLMKTYEQRKRER 185


>gi|268315891|ref|YP_003289610.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333425|gb|ACY47222.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 1032

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 39/156 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L+     +Q  A+       V A  G+GKT  L  R+  L+      P+  L +T T+ A
Sbjct: 472 LVGLDPEQQAAATYTDGPVLVVAGPGTGKTRTLTYRLAYLIKERGVDPAQCLAVTFTRRA 531

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++                                       E    + V 
Sbjct: 532 ADEMRTRLQALLG--------------------------------------EAAADVTVT 553

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H     ++Q +     +     +A E + + ++E
Sbjct: 554 TFHGLGLELLQTYGDRLGLPQPLRVATEAEQRAVLE 589


>gi|238899306|ref|YP_002924989.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467067|gb|ACQ68841.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 676

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 43/178 (24%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            ++      T    V A AGSGKT +++ ++  L+         +  +T T  AA EM  
Sbjct: 9   QQKEAIEFVTGPCLVLAGAGSGKTRVIIHKIAHLIRRCGYLSRQIAAVTFTNKAAREMKE 68

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV +I+                                           GL + T HA  
Sbjct: 69  RVADILGRKETF-------------------------------------GLIISTFHALG 91

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
             I++    + NI   F++ D +    L++E     L    L+N++   +A  + +  
Sbjct: 92  LEIIRAEIAQLNIGPTFSLFDAQDQWTLLKE-----LTETCLNNDKTQLEALVKAISH 144


>gi|148259806|ref|YP_001233933.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|146401487|gb|ABQ30014.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
          Length = 639

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 44/191 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLC 67
           E    +D +S T+ + +   D   +A V A  G GKT +L  R+ R+L + A     +L 
Sbjct: 4   ELQAALDRLSPTQRQAVDWED--GAALVLAGPGVGKTTVLTTRIARILDSTAGKNFRILA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  A  EM  RV  I+   +  +                                  
Sbjct: 62  LTFTTKAGDEMRERVEAIVPGLAERTV--------------------------------- 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD-EEQSKKLIEEAKKSTLA--SIMLDN 184
                + T H+FC  +++Q      I   F I D +E   +L+++A +   +  + +  +
Sbjct: 89  -----IGTFHSFCAQVLRQHGSHLAIKPDFGIYDQDEDRAELLKDALEQAASHGAAVTAD 143

Query: 185 NEELKKAFYEI 195
           +    +A  ++
Sbjct: 144 DTRWLRAIDQL 154


>gi|294786537|ref|ZP_06751791.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305]
 gi|315226115|ref|ZP_07867903.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105]
 gi|294485370|gb|EFG33004.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305]
 gi|315120247|gb|EFT83379.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105]
          Length = 1674

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 25/166 (15%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            + ++ +   P  +   + A AGSGKT+++ +R+ +L+      P  +L LT T+ AA E
Sbjct: 11  NEQQEDIIQAPADQDLLIVAGAGSGKTYVMTKRIAKLITDDGVAPHKILGLTFTRKAAGE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV +  ++ S                +   +  +S A  L  T         V T  
Sbjct: 71  LLDRVTKETSSLSP--------------DQSAGRPGLSYAGFLHPT---------VSTYD 107

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           AF ++I++Q+     +    A   +  + +L  E     +A    D
Sbjct: 108 AFFQSIVRQYGALVGLDGSAAPLSQAGAYQLASEVVGEHVAQYAQD 153


>gi|321310938|ref|YP_004193267.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802782|emb|CBY93428.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
          Length = 584

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 46/164 (28%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +     +      P +   V A AG+GKT +L +R++ L+ +N A P  +L +T T  AA
Sbjct: 1   MELNPEQARAVKAPPKPILVIAPAGTGKTRVLTERIIYLIESNIAAPDEILAITFTNLAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I     + D                                      + T
Sbjct: 61  NEMVSRVENRIKDKHRIPDA-------------------------------------IGT 83

Query: 136 IHAFCEAIMQQFPLEANI-----TSHFAIADEEQSKKLIEEAKK 174
           IH+    I+++   +  +       +F I   +    +  +A  
Sbjct: 84  IHSLFGEILRK---DIGLVCRNRNFNFEITYGDFQDSIFRKALN 124


>gi|317404550|gb|EFV84957.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 687

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 54/192 (28%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++  + E +L  D      V A AGSGKT ++ Q++  LL         ++ LT T  A
Sbjct: 10  GLNPAQKEAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++                               R L         GL + 
Sbjct: 68  AREMDERVRTLVD------------------------------RKLGK-------GLTIS 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK--------------STLASI 180
           T H+    ++++    A +   F+I D + +  +I+E                 S   + 
Sbjct: 91  TFHSLGVKLLREEARNAGLKPTFSILDADDAMAIIQELLATTDKGRLRHVQGIISLWKNA 150

Query: 181 MLDNNEELKKAF 192
           +++ ++  ++A 
Sbjct: 151 LMEPDDAAREAI 162


>gi|229593328|ref|YP_002875447.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
 gi|229365194|emb|CAY53470.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
          Length = 669

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQQCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLKGGEGR-------------------------------------GLTVCTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHARLGYKPGFSIFDETDVKSLMTDIMQ 123


>gi|219559253|ref|ZP_03538329.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
          Length = 356

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 33  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 92

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 93  LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 130

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 131 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 166


>gi|224372826|ref|YP_002607198.1| ATP-dependent helicase [Nautilia profundicola AmH]
 gi|223588787|gb|ACM92523.1| ATP-dependent helicase [Nautilia profundicola AmH]
          Length = 675

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 44/101 (43%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            K +   A+ P     V A+AG+GKT  +V R+  LL     P  +L LT T  AA EM 
Sbjct: 7   NKEQLQAATAPLGHNLVIASAGTGKTSTIVGRIAYLLEEGIKPEEILLLTFTNKAAQEMK 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            RV  ++ +  ++      A   +   K      + + + L
Sbjct: 67  ERVAGVLPSARNIEAGTFHAVSYRWLKKLNKNIVLKQPKDL 107


>gi|297619071|ref|YP_003707176.1| UvrD/REP helicase [Methanococcus voltae A3]
 gi|297378048|gb|ADI36203.1| UvrD/REP helicase [Methanococcus voltae A3]
          Length = 1085

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 40/148 (27%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             +S++           + A  GSGKT  +  +++ L+   N  P  +L LT ++ AA E
Sbjct: 12  PNESQKRAIEYTNGPLLILAGPGSGKTFTITNKIISLIENQNLKPEKILALTFSEKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV + I                                           G+ + T H
Sbjct: 72  MLTRVEKEIG---------------------------------------LNTGISISTFH 92

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQS 165
           +FC  ++ +F  E    S+  +  +E +
Sbjct: 93  SFCNDLINEFAFEIGRGSNLKLISKEHA 120


>gi|126666630|ref|ZP_01737608.1| ATP-dependent DNA helicase Rep [Marinobacter sp. ELB17]
 gi|126629018|gb|EAZ99637.1| ATP-dependent DNA helicase Rep [Marinobacter sp. ELB17]
          Length = 672

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 45/214 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75
           ++  + E +  +D      V A AGSGKT ++ +++  L+     P   +  +T T  AA
Sbjct: 4   LNPRQREAVRYAD--GPMLVLAGAGSGKTSVITRKIAFLIEQLGIPGRHIAAVTFTNKAA 61

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV  II                                           GL V T
Sbjct: 62  REMKERVGRIIDRKLTR-------------------------------------GLTVST 84

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++          F+I D E +K L+++     L     D  +EL      I
Sbjct: 85  FHNLGLNIIREEHDHVGYHPGFSIFDAEDAKALLQDLM---LTHGSTDAGDELNPVQMTI 141

Query: 196 LEISNDED--IETLISDIISNRTALKLIFFFFSY 227
               N      E L          + +I+ +++ 
Sbjct: 142 SSWKNAMRPPAEALSKAADEREQRIAIIYGYYNE 175


>gi|251792613|ref|YP_003007339.1| exodeoxyribonuclease V subunit beta [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534006|gb|ACS97252.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 1220

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E I
Sbjct: 16  LIEASAGTGKTYTMGSLYLRLLLQAGKNAFPYALNVEQILVVTFTEMATEELKKKIRERI 75

Query: 87  TA-------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                    +    D     +   ++G     +D+  A   L    +      + TIH F
Sbjct: 76  YDAKQKVIVYQQTRDLCAFEQDDFLRGLAETITDLPLAIQRLTLAEQNMDLAAIYTIHGF 135

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ Q+   + I  HF +    +  +L+    ++   +        + +   + L   
Sbjct: 136 CRRMLVQYAFNSGI--HFNLELSGEEDELLLHLAQNVWRTHFYSQPYAVVEFIQQNLTSP 193

Query: 200 ND 201
           ++
Sbjct: 194 SN 195


>gi|92113296|ref|YP_573224.1| exodeoxyribonuclease V, beta subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91796386|gb|ABE58525.1| exodeoxyribonuclease V, beta subunit [Chromohalobacter salexigens
           DSM 3043]
          Length = 1269

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH------------PSTLLCLTHTKAAAAEMSHRV 82
            + A+AG+GKT  L    +RL+L                P  +L +T T+AA AE+  R+
Sbjct: 27  LIEASAGTGKTFTLAALYVRLVLGPLPGREACDYPRPLLPPEILVVTFTEAATAELRGRI 86

Query: 83  LEIITAWSHLSDEILSAEITKIQGK------KPNKSDMSKARHLLITILETPGGLKVQTI 136
              +            A    + G       +  ++ ++ A   L           + TI
Sbjct: 87  RARLKEARDWLLAPPEARHDDVLGALLTPLVEAGQTAVASAAKRLDQAARLMDEAAIFTI 146

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           H FC+ ++ +   +A       +  +  +  L+    +    
Sbjct: 147 HGFCQRMLTRHAFDAGARFGAELLQDGST--LLTRVVEDYWR 186


>gi|114320846|ref|YP_742529.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227240|gb|ABI57039.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 683

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 44/198 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
            + +  + +     A V A AGSGKT    +R  R L     P S ++ LT T  AA EM
Sbjct: 3   DQDQARVVAHEDGPAAVLAGAGSGKTRCTTERAARRLTERGLPGSAMVLLTFTNKAAGEM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +     L                                        + T H+
Sbjct: 63  RERLAARLPKGVDLP--------------------------------------WIGTFHS 84

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----KSTLASIMLDNNEELKKAFY 193
           F   ++++      +  +  + D E S+++++          T     ++  + L  A  
Sbjct: 85  FGSRLLREHGQRIGVPGNATLMDAEDSRRMLDALLAGPFPDRTRRQRAMEAQDALAAAGL 144

Query: 194 EILEISNDEDIETLISDI 211
           +  E  +   +   +  +
Sbjct: 145 DPTEPDHLAPMRDALEAM 162


>gi|257075423|ref|ZP_05569784.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1]
          Length = 924

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 64/158 (40%), Gaps = 44/158 (27%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I+ T  ++   +  +    V A  GSGKT ++ +RV +L+     P  ++ +T T+ AA 
Sbjct: 5   INLTDEQEKAIAHKSGRLRVIACPGSGKTEVIARRVAKLIKDGEKPEGIVAITFTEKAAE 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ +I+                    + P ++D               G +   TI
Sbjct: 65  ELKTRIRKIL------------------DVECPERAD--------------FGDMFTGTI 92

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           H F   I+++      +  ++   D      ++E+A++
Sbjct: 93  HGFALDILRE------LDPYYRTFD------VLEDARR 118


>gi|88608144|ref|YP_506352.1| ATP-dependent DNA helicase UvrD [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600313|gb|ABD45781.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia sennetsu
           str. Miyayama]
          Length = 907

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 20/188 (10%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            +DP  S W++++AG GKT +LV+R + LL+       +LC+T TK A AEM +R+  I+
Sbjct: 5   VTDPNVSVWINSSAGCGKTTLLVRRAISLLVNKEK--NILCITFTKVATAEMHNRIFAIL 62

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              S ++D  +   +     +     D    R L+ T       +++QT+H+FC   ++ 
Sbjct: 63  GKLSAMNDTDMDEYLLSTINRTV--KDRDYVRKLVYTA---DAFIQIQTLHSFCWQSIK- 116

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
                       + D     K I E  +     ++     E  +   +  E + +  +  
Sbjct: 117 ------------MCDRRHLSKEIYEENQHMFCQLLARFIWERCQLSKKTAEKTTERKLHE 164

Query: 207 LISDIISN 214
            ++ ++SN
Sbjct: 165 TLASLLSN 172


>gi|154933919|gb|ABS88757.1| StkZ [Myxococcus xanthus]
          Length = 651

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 36/133 (27%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            A AGSGKT  L  RV R+L     P+ +L LT T  AA EM+ RV E+  A+  +    
Sbjct: 2   IAGAGSGKTRTLTFRVARMLERGVPPAGILLLTFTNKAAREMTRRVEELAGAFVDV---- 57

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                R +L             T H     +++Q+      +++
Sbjct: 58  ---------------------RRILG-----------GTFHHAAHVLLRQYAGVLGFSTN 85

Query: 157 FAIADEEQSKKLI 169
           F + D E ++ L+
Sbjct: 86  FTVLDREDARDLM 98


>gi|240014083|ref|ZP_04720996.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121644|ref|ZP_04734606.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 671

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             ++QL A        +V A AGSGKT ++ Q++  L++     P T+  +T T  AAAE
Sbjct: 4   LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKMKHLIVNVGYLPHTVAAITFTNKAAAE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 64  MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +    I+++         +F+I D   S K+I E  
Sbjct: 87  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122


>gi|50084109|ref|YP_045619.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
 gi|49530085|emb|CAG67797.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
          Length = 679

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 47/187 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT ++ Q++  L+     P   +  +T T  AA EM
Sbjct: 8   NDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAAREM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV ++++                                      E   GL V T H 
Sbjct: 68  KERVAKLLSR-------------------------------------EDAKGLSVSTFHT 90

Query: 139 FCEAIMQQFPLEANITS---HFAIADEEQSKK-LIEEAKKSTLASIMLDNNEELKKAFYE 194
           F   +++   LE   T    +F+I D +  K+ L++  ++  L+    ++ E + KA  +
Sbjct: 91  FGLNLLR---LELKHTPLKNNFSILDSDDCKRILMDLMQRDNLS--GAESKELIAKAMKK 145

Query: 195 ILEISND 201
           I +  ND
Sbjct: 146 ISDWKND 152


>gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1146

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q  + ++ + + T+ +  + +       V A AGSGKT  + QRV+ L+      P  +L
Sbjct: 12  QALAASLGIHTPTEEQARVIAHRLSPLLVVAGAGSGKTATMAQRVVYLVATGQVRPDQVL 71

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+ A AE+  RV   +T          +A      G     S              
Sbjct: 72  GLTFTRKATAELDQRVASRLTGLGAAGMLPATAPDGAETGGDTADST------------- 118

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             G   + T ++F  ++++   L   +     +  + +S
Sbjct: 119 DVGEPMIATYNSFAGSLVRDHGLRIGVDPDSTLITQARS 157


>gi|257460429|ref|ZP_05625530.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268]
 gi|257441760|gb|EEV16902.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268]
          Length = 686

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 38/161 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S+ ++ ++ T+ E   AS    +  + A AGSGKT  +  R+  LL     P   L LT
Sbjct: 1   MSDILEGLNPTQRE--AASHVDGAMLILAGAGSGKTKTITARLAYLLSNGVPPGNTLTLT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA EM  R L +I+  +     +L                                
Sbjct: 59  FTNKAATEMRSRALNLISGLNLSGVPLLC------------------------------- 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
                T H F    ++    E   +++F + D +  KK+I+
Sbjct: 88  -----TFHKFGLLFLKFHISELGRSANFQVIDTDDKKKIIK 123


>gi|289805484|ref|ZP_06536113.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 112

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 38/143 (26%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q      T    V A AGSGKT ++  ++  L+         +  +T T  AA EM  R
Sbjct: 7   QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                             +AR           GL + T H    
Sbjct: 67  VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQ 164
            I+++      + S+F++ D+  
Sbjct: 90  DIIKREYAALGMKSNFSLFDDTD 112


>gi|71275278|ref|ZP_00651565.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon]
 gi|71900136|ref|ZP_00682277.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
 gi|71164087|gb|EAO13802.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon]
 gi|71730085|gb|EAO32175.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
          Length = 658

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 38/177 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      ++           V A AGSGKT ++V+++  L+ ++ +P   +  +T T  +
Sbjct: 1   MHGLNSPQRAAVLYREGPLLVLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I +                                         GL + 
Sbjct: 61  AKEMRERVAKQIKS-------------------------------------SRADGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           T HA     +Q       +   F++ D + +   I +        ++ D    + +A
Sbjct: 84  TFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRA 140


>gi|113954302|ref|YP_730266.1| exodeoxyribonuclease V subunit beta [Synechococcus sp. CC9311]
 gi|113881653|gb|ABI46611.1| exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9311]
          Length = 1212

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 17/159 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L   VLRL+     +   LL +T T++AAAE+  R+   +       
Sbjct: 18  LLEASAGTGKTFALAHLVLRLVTERKLNLKELLVVTFTESAAAELRDRIGRRLNDALQAL 77

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHL--------------LITILETPGGLKVQTIHAF 139
            +  +          P  + M +   L              L+  LE      + TIH F
Sbjct: 78  LQNQTNNSNSQTDSSPTDAVMEEWLILHGQDPNTRRTIASNLLEALEGLERADITTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           C   +++  L+    +   +  E  S+ L +E       
Sbjct: 138 CRRSLRRQALQNG--TAMEVCLENDSQHLSQEVAYDYWE 174


>gi|294669243|ref|ZP_06734323.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308875|gb|EFE50118.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 623

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 39/172 (22%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +Q+ A         V A AGSGKT ++ Q++  L++     P T+  +T T  AA E
Sbjct: 3   LNPQQIEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATE 62

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV +++                                           GL + T H
Sbjct: 63  MQERVAKMLPKSQTR-------------------------------------GLTICTFH 85

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           +    I+++         +F+I D   S K+I E    T    +     ++ 
Sbjct: 86  SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGGTGKEALFKAQHQIS 137


>gi|198283952|ref|YP_002220273.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665213|ref|YP_002426586.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248473|gb|ACH84066.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517426|gb|ACK78012.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 662

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 44/190 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +      +Q   +       V A AGSGKT ++ ++++ L+      P  +  +T T  A
Sbjct: 4   MAELNPPQQEAVTHIHGPLLVLAGAGSGKTRVITRKIVHLIREQQVAPRHICAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV E +                                        +  GL V 
Sbjct: 64  AREMKSRVGEALQG-------------------------------------HSSRGLMVS 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     I+++         +F++ D   S  ++    +        +   +L +A   
Sbjct: 87  TFHHLGLQILRKDIERLGYRGNFSVIDPGDSLGMVRNLLRE------ANGPSDLAEAIQS 140

Query: 195 ILEISNDEDI 204
            +    ++ I
Sbjct: 141 RISRFKNDGI 150


>gi|197121750|ref|YP_002133701.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196171599|gb|ACG72572.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 1195

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 21/140 (15%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEI 85
                VSA AGSGKT  LV+  +RLL  +A      P  L  +T T+ AA E+       
Sbjct: 18  EAPTAVSAGAGSGKTTALVELCVRLLEGSALGSPCEPRALAAITFTEKAAEEL------- 70

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                   +E L A +T          +  +AR  L   L     + V TIH FC  +++
Sbjct: 71  --------EERLRAAVTARARAAREAPESPEARAWLER-LHGLDAMAVGTIHGFCGRLLR 121

Query: 146 QFPLEANITSHFAIADEEQS 165
           +   EA +    A+ DE+++
Sbjct: 122 EHAPEAGLDPEAAVLDEDRA 141


>gi|308232374|ref|ZP_07415860.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308379444|ref|ZP_07486303.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308380606|ref|ZP_07490521.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|308214071|gb|EFO73470.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308356886|gb|EFP45737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308360886|gb|EFP49737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
          Length = 1144

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 57  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 116

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 117 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 154

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 155 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 190


>gi|224534254|ref|ZP_03674832.1| DNA helicase [Borrelia spielmanii A14S]
 gi|224514356|gb|EEF84672.1| DNA helicase [Borrelia spielmanii A14S]
          Length = 698

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 42/154 (27%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            E+++ S+      V A  GSGKT +++ +++ L+   N +P+ +L LT T  AA EM+ 
Sbjct: 15  QEKIVFSESKNPILVLAGPGSGKTRVIIAKIVYLIKHMNINPNEILALTFTNKAANEMND 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                            L +QT H+F 
Sbjct: 75  RINDLLKFDKK---------------------------------------LHIQTFHSFG 95

Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172
             +++ +    + N  S+F I D     + +++ 
Sbjct: 96  SWLLRCYYKDFDKNYDSNFTIWDTNDVVRFVKQI 129


>gi|170731281|ref|YP_001776714.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
 gi|167966074|gb|ACA13084.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
          Length = 658

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 38/177 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      ++           V A AGSGKT ++V+++  L+ ++ +P   +  +T T  +
Sbjct: 1   MHGLNSPQRAAVLYREGPLLVLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I +                                         GL + 
Sbjct: 61  AKEMRERVAKQIKS-------------------------------------SRADGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           T HA     +Q       +   F++ D + +   I +        ++ D    + +A
Sbjct: 84  TFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRA 140


>gi|264676501|ref|YP_003276407.1| exodeoxyribonuclease V subunit beta [Comamonas testosteroni CNB-2]
 gi|262207013|gb|ACY31111.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni CNB-2]
          Length = 1269

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 21/194 (10%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T+AA  E+S R+
Sbjct: 24  GSRLIEASAGTGKTWTIAALYLRLVLGHGAENGFARALMPPDILVMTFTRAATRELSDRI 83

Query: 83  LEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              +                 + +  ++           A   L    +      + TI 
Sbjct: 84  RARLIEAVQCFRGEAEPAAHDSFLRDLRDAYAEGELRDTAAWRLDMAAQCMDDAAIHTID 143

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A+C+ ++++   ++   + F    E    +   EA +          + E+ +A  ++  
Sbjct: 144 AWCQRMLREHAFDSG--NLFDETLEADESQRQTEAAQDYWRQQCYPLSGEVLEAALQVW- 200

Query: 198 ISNDEDIETLISDI 211
                D++ L+ D+
Sbjct: 201 ----PDVQALVKDM 210


>gi|77461740|ref|YP_351247.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Pf0-1]
 gi|77385743|gb|ABA77256.1| ATP-dependent DNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 669

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q   +       V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRPGEGR-------------------------------------GLTVCTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHERLGYKPGFSIFDETDVKSLMTDIMQ 123


>gi|32491021|ref|NP_871275.1| hypothetical protein WGLp272 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166227|dbj|BAC24418.1| uvrD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 719

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 44/209 (21%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +    ++ + +   ++  V A AGSGKT +L  ++  L+ +   H S+++ +T T   A 
Sbjct: 9   NLNDKQKEIITSSYKNILVLAGAGSGKTKVLTNKIAWLIDVKKYHSSSIMAVTFTNKGAK 68

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +R                                       +  +++    + + T 
Sbjct: 69  EIINR---------------------------------------MKFLIKNLKDIWIGTF 89

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H     ++     E+ +  +F I D E   KLI +   S      L+ N +      E +
Sbjct: 90  HGLSYKLLCMHYTESKLFKNFQIIDSEDQLKLIHQINLSM----KLNFNNKSYHNILEYI 145

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFF 225
               D+ I     +I  N     L    +
Sbjct: 146 RNYKDKGIRPSFCEININNKKNILYNKIY 174


>gi|294142626|ref|YP_003558604.1| ATP-dependent DNA helicase Rep [Shewanella violacea DSS12]
 gi|293329095|dbj|BAJ03826.1| ATP-dependent DNA helicase Rep [Shewanella violacea DSS12]
          Length = 670

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 43/182 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPGQDEAVHYVSGPCLVLAGAGSGKTRVIINKIAHLVQNCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAKSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++      +   F++ D++ S  L+++  +  L     D +++L ++    
Sbjct: 84  FHTLGLEIIKKEHKVVGLKKGFSLFDDQDSLALLKDLTEDEL-----DGDKDLLRSLMTT 138

Query: 196 LE 197
           + 
Sbjct: 139 IS 140


>gi|262280866|ref|ZP_06058649.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257766|gb|EEY76501.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 687

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 48/200 (24%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q   A+   ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 34  LINELNAQQKKAATTSAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 93

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 94  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 115

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H FC  ++++ P    +   F+I D +    +        L     DN         +
Sbjct: 116 TFHTFCMYLLRRNPQAFGLN-QFSIIDRDDQLLMFR-----LLRGKDKDNVLPKAAELCD 169

Query: 195 ILEISNDEDI---ETLISDI 211
           +   + +      E LI  +
Sbjct: 170 LYSYARNTQTKLSEALIKQL 189


>gi|308371270|ref|ZP_07424390.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308372459|ref|ZP_07428757.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308376024|ref|ZP_07445856.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007]
 gi|308378226|ref|ZP_07481952.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|308329221|gb|EFP18072.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308333053|gb|EFP21904.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308344515|gb|EFP33366.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007]
 gi|308353144|gb|EFP41995.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
          Length = 1144

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 57  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 116

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 117 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 154

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 155 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 190


>gi|260890362|ref|ZP_05901625.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii
           F0254]
 gi|260859982|gb|EEX74482.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii
           F0254]
          Length = 638

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 7/171 (4%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +  + A+AG+GKT+ L    +  L+   +   ++ +T TK A AE+  R+ + +   +  
Sbjct: 4   NIILKASAGTGKTYRLSLEFIANLVRGVNYKNIVVMTFTKKATAEIKERIFDFLYQIAFD 63

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                  E    +  K +  +  + +++   +++    +++ TI  F   I +       
Sbjct: 64  KGNGAELEKNLKEIYKFDNLNKKELQNIYFEMIKNKEDIRISTIDRFTNQIFKNA----- 118

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           IT +F I + E  +K  +E     L  I+   NEE+ + F  I +   ++ 
Sbjct: 119 ITPYFNIYNYEIFEKETDEFYSKVLIKII--ENEEIFQKFKFIFDEKKEKK 167


>gi|218754981|ref|ZP_03533777.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
 gi|289763384|ref|ZP_06522762.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
 gi|289710890|gb|EFD74906.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
          Length = 1101

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 14  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 74  LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147


>gi|15829169|ref|NP_326529.1| ATP-dependent helicase PcrA [Mycoplasma pulmonis UAB CTIP]
 gi|14090113|emb|CAC13871.1| ATP-DEPENDENT HELICASE PCRA [Mycoplasma pulmonis]
          Length = 734

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 42/188 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           L +  + ++           + A AGSGKT ++  ++  L+      P  +L LT T  A
Sbjct: 2   LSNLNQRQKEAVVYTKGPLRIIAGAGSGKTRVITSKIAYLIEHEKIAPWKILGLTFTNKA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R L++I   +   +                                        
Sbjct: 62  AREMKERALKMIGPKASHVEL--------------------------------------S 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+ C  I++Q   +     +F I DE   K++++      L   +   +  +  AF  
Sbjct: 84  TFHSLCNVILKQDIDKIGYPKNFEIVDESDKKQILKGIY---LELAITTKDVSIWDAFDY 140

Query: 195 ILEISNDE 202
           I ++  ++
Sbjct: 141 IAKMKKNK 148


>gi|119475297|ref|ZP_01615650.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2143]
 gi|119451500|gb|EAW32733.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2143]
          Length = 671

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 39/159 (24%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           ++Q    Q  A+        V A AGSGKT ++ Q++  L+       + +  +T T  A
Sbjct: 1   MNQLNPRQREAAHYIDGPLLVLAGAGSGKTSVITQKIAYLIEKCGIKGNHIAAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV ++++  +                          AR L+           V 
Sbjct: 61  AREMKERVSQLVSGPA--------------------------ARGLI-----------VS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H     I+++        S F+I D++ ++ LI +  
Sbjct: 84  TFHNLGLNILRKEHKSIGYKSGFSIFDQQDAQALIRDLL 122


>gi|116671302|ref|YP_832235.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611411|gb|ABK04135.1| UvrD/REP helicase [Arthrobacter sp. FB24]
          Length = 1183

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 23/181 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           S T  +  + S P     V A AGSGKT  +  RV+ L+      P  +L +T T+ AA 
Sbjct: 26  SPTAEQSAIISSPLTPRLVIAGAGSGKTATMADRVVWLVANGWVRPEEVLGVTFTRKAAG 85

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E++ R+   ++A   ++ E     I        +  +                  KV T 
Sbjct: 86  ELASRIRSKLSALQRIAAEDTGHRIFPEGLLSEDALEP-----------------KVSTY 128

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H++   I+  + L   +     +    Q+ +L  E              E  + A   ++
Sbjct: 129 HSYASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVV-----EAFDGEYEHFRAAKSTLV 183

Query: 197 E 197
           +
Sbjct: 184 K 184


>gi|315636579|ref|ZP_07891813.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri
           JV22]
 gi|315479088|gb|EFU69787.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri
           JV22]
          Length = 684

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           LIS   S+++ A        + A AGSGKT  +  R+  L+     PS++L LT T  AA
Sbjct: 6   LISLNDSQKIAAQHVDGPLLILAGAGSGKTKTITTRLAFLISIGIDPSSILTLTFTNKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R   ++ +    +  +L                                     T
Sbjct: 66  TEMRERAFSLLDSSKIFTPPLLC------------------------------------T 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H F    ++    E    ++F I D +  K++++   K   ++++     + K +    
Sbjct: 90  FHKFGLLFLKFHMSELERKNNFIIIDTDDKKRILKSINKEIPSALLASEVSKYKNSLMSP 149

Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222
            E+     +  L  +I       +   
Sbjct: 150 SEVKATAQL-KLYQEIAQIYEDYENYL 175


>gi|219684489|ref|ZP_03539432.1| DNA helicase [Borrelia garinii PBr]
 gi|219671851|gb|EED28905.1| DNA helicase [Borrelia garinii PBr]
          Length = 698

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 50/187 (26%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            E+++ S       V A  GSGKT +++ +++ L+   N +P+ +L LT T  AA EM+ 
Sbjct: 15  QEKIVFSKSKNPILVLAGPGSGKTRVIIAKIVYLIKHMNINPNEILALTFTNKAANEMND 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                            L +QT H+F 
Sbjct: 75  RINDLLKFDKK---------------------------------------LHIQTFHSFG 95

Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA-------KKSTLASIMLDNNEELK-K 190
             +++ +    + N  S+F I D     K ++E            +A+++L + E    +
Sbjct: 96  SWLLRAYYKNFDRNYDSNFTIWDTNDVVKFVKEINLAPNFEMAKYIAALILKDKENFFLE 155

Query: 191 AFYEILE 197
            F +  E
Sbjct: 156 KFIKFAE 162


>gi|116072446|ref|ZP_01469713.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus
           sp. BL107]
 gi|116064968|gb|EAU70727.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus
           sp. BL107]
          Length = 1217

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 31/212 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L    LRL+   A+P  TLL +T+T+AAA E+  R+ + +       
Sbjct: 22  LLEASAGTGKTFALAHLTLRLITEAAYPLETLLVVTYTEAAAEELRSRIGQRLQQALVGL 81

Query: 94  DEILSAE--------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +++ +          +     +    SD       L+  LE      + TIH FC   ++
Sbjct: 82  EQLENETFPSAPDPVMAAWWEQCMASSDRRIRIRRLLVALEQLDRADIATIHGFCRRSLR 141

Query: 146 QFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF----------- 192
           +  L+    I        E  +  L  E  +      +L   +E  +             
Sbjct: 142 RLALDNGAAIEPQL----ESDAAALQAEVVQHLWQQELLTLPDEQLQGLRQRGLSPQTFG 197

Query: 193 YEILEISND-----EDIETLISDIISNRTALK 219
             +  +  D          L+  +   R  L 
Sbjct: 198 AALARLDGDPHPRLAGDSALVDGLAPLRDQLP 229


>gi|169797307|ref|YP_001715100.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           AYE]
 gi|213155883|ref|YP_002317928.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii
           AB0057]
 gi|215484744|ref|YP_002326979.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii
           AB307-0294]
 gi|294836578|ref|ZP_06781261.1| putative ATP-dependent DNA helicase [Acinetobacter sp. 6013113]
 gi|294857931|ref|ZP_06795700.1| putative ATP-dependent DNA helicase [Acinetobacter sp. 6013150]
 gi|301346572|ref|ZP_07227313.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB056]
 gi|301594476|ref|ZP_07239484.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB059]
 gi|169150234|emb|CAM88130.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           AYE]
 gi|213055043|gb|ACJ39945.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii
           AB0057]
 gi|213986256|gb|ACJ56555.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii
           AB307-0294]
          Length = 659

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q   A+   ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 6   LINELNAQQKKAATTTAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 66  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H FC  ++++ P    +T  F+I D +    +    +
Sbjct: 88  TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125


>gi|157738288|ref|YP_001490972.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri RM4018]
 gi|157700142|gb|ABV68302.1| ATP-dependent DNA helicase, UvrD/PcrA family [Arcobacter butzleri
           RM4018]
          Length = 684

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           LIS   S+++ A        + A AGSGKT  +  R+  L+     PS++L LT T  AA
Sbjct: 6   LISLNDSQKIAAQHVDGPLLILAGAGSGKTKTITTRLAFLISIGIDPSSILTLTFTNKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R   ++ +    +  +L                                     T
Sbjct: 66  TEMRERAFSLLDSSKIFTPPLLC------------------------------------T 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H F    ++    E    ++F I D +  K++++   K   ++++     + K +    
Sbjct: 90  FHKFGLLFLKFHMSELERKNNFIIIDTDDKKRILKSINKEIPSALLASEVSKYKNSLMSP 149

Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222
            E+     +  L  +I       +   
Sbjct: 150 SEVKATAQL-KLYQEIAQIYEDYENYL 175


>gi|260202354|ref|ZP_05769845.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289444772|ref|ZP_06434516.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289417691|gb|EFD14931.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
          Length = 1101

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 14  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 74  LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147


>gi|240142186|ref|YP_002966696.1| putative DNA-dependent ATPase I and helicase II [Methylobacterium
           extorquens AM1]
 gi|240012130|gb|ACS43355.1| putative DNA-dependent ATPase I and helicase II [Methylobacterium
           extorquens AM1]
          Length = 597

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 35/156 (22%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++    +   A+    R A V A  GSGKT  L+ R L L        ++L  T T  AA
Sbjct: 1   MNLDDDQMRAATHAGPRPAIVIAGPGSGKTRTLIGRHLHLHRTGVPRESILTATFTVKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R++E     S                                      G + V T
Sbjct: 61  QEVRARLVEAHGDISETE----------------------------------LGRMFVGT 86

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            H  C  +++QF     +   F I  +E    L++E
Sbjct: 87  FHGLCVRLLRQFHDRVGLPKDFQIVGDEAQIALLKE 122


>gi|203284261|ref|YP_002222001.1| DNA helicase [Borrelia duttonii Ly]
 gi|201083704|gb|ACH93295.1| DNA helicase [Borrelia duttonii Ly]
          Length = 698

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 42/155 (27%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
             +Q++  D T    V A  GSGKT ++  +   L+      P  +L LT T  AA EM+
Sbjct: 15  DQKQIVFDDTTNPILVLAGPGSGKTRVITAKFAHLINEGKVKPEEILALTFTNKAAREMN 74

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                                       L ++      L +QT H+F
Sbjct: 75  FR---------------------------------------LNSLFNFDRSLHIQTFHSF 95

Query: 140 CEAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172
              +++ +    + N  S+F I D     K +++ 
Sbjct: 96  GAWLLRLYFKEYDENYDSNFTIWDVNDVVKFVKQI 130


>gi|260549135|ref|ZP_05823356.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260407863|gb|EEX01335.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 659

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q   A+   ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 6   LINELNAQQKKAATTTAQNCLVLAGAGCGKTKTIVARAAYLIDQGLSANQIQILTFTRRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 66  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H FC  ++++ P    +T  F+I D +    +    +
Sbjct: 88  TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125


>gi|15610337|ref|NP_217717.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv]
 gi|15842787|ref|NP_337824.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551]
 gi|31794378|ref|NP_856871.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97]
 gi|121639086|ref|YP_979310.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663060|ref|YP_001284583.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148824397|ref|YP_001289151.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11]
 gi|215405207|ref|ZP_03417388.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987]
 gi|215432160|ref|ZP_03430079.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054]
 gi|224991578|ref|YP_002646267.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800237|ref|YP_003033238.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254365824|ref|ZP_04981869.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254552298|ref|ZP_05142745.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188244|ref|ZP_05765718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|260206546|ref|ZP_05774037.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289448884|ref|ZP_06438628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289555474|ref|ZP_06444684.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289575916|ref|ZP_06456143.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289747014|ref|ZP_06506392.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289755320|ref|ZP_06514698.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|297635848|ref|ZP_06953628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297732844|ref|ZP_06961962.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506]
 gi|307085954|ref|ZP_07495067.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012]
 gi|313660177|ref|ZP_07817057.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475]
 gi|2827611|emb|CAA16666.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis
           H37Rv]
 gi|13883113|gb|AAK47638.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551]
 gi|31619974|emb|CAD95318.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97]
 gi|121494734|emb|CAL73215.1| Probable ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|134151337|gb|EBA43382.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148507212|gb|ABQ75021.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148722924|gb|ABR07549.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           F11]
 gi|224774693|dbj|BAH27499.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321740|gb|ACT26343.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|289421842|gb|EFD19043.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289440106|gb|EFD22599.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289540347|gb|EFD44925.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289687542|gb|EFD55030.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289695907|gb|EFD63336.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|308364573|gb|EFP53424.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012]
 gi|323718065|gb|EGB27247.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A]
 gi|328459972|gb|AEB05395.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
          Length = 1101

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 14  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 74  LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147


>gi|325916135|ref|ZP_08178422.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937]
 gi|325537679|gb|EGD09388.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937]
          Length = 658

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 48/205 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +            V A AGSGKT ++V+++  L+    +P   +  +T T  +
Sbjct: 1   MHGLNPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIATGRYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I                                       +   GL + 
Sbjct: 61  AKEMRERVAKRIRG-------------------------------------DGADGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA     +Q     A +   F+I D + +   I++        +M     +  +    
Sbjct: 84  TFHALGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKD--------LMHGAKPDAIEDAKN 135

Query: 195 ILEISNDEDI--ETLISDIISNRTA 217
           ++  + +  +  E  ++   SNR  
Sbjct: 136 LISRAKNAGLSPEQAMAAARSNREK 160


>gi|54026511|ref|YP_120753.1| putative DNA helicase [Nocardia farcinica IFM 10152]
 gi|54018019|dbj|BAD59389.1| putative DNA helicase [Nocardia farcinica IFM 10152]
          Length = 1184

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 93/240 (38%), Gaps = 25/240 (10%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S    ++ + L   T  +  + + P     V A AG+GKT  +  RV+ ++      P  
Sbjct: 4   SPHRIADALGLPPPTDEQAAVIAAPPGPTLVVAGAGAGKTETMAARVVWMVANRLVLPEQ 63

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA +++ R+   +   +       SA + ++      ++ ++ A       
Sbjct: 64  VLGLTFTRKAAQQLTARIRTRLARLAG------SALLRELDSGGELRAQLAGA------- 110

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                  ++ T H++   ++ +  L   +     +  E Q  +L  +  ++    +   +
Sbjct: 111 -----EPEISTYHSYAGRLLSEHGLLLPVEPSATLLTETQLWQLAHQVVRNWDGDL---D 162

Query: 185 NEELKKAFYEILEISNDEDIETLI--SDIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241
            E    +  E +   + +  E L+   ++      L KLI    +   +R    K+L  I
Sbjct: 163 TERTPVSVTEAVLALSGQLAEHLVEPEELAEAHAELEKLINTLPAGPRQRGGPSKALRDI 222


>gi|330470779|ref|YP_004408522.1| uvrd/rep helicase [Verrucosispora maris AB-18-032]
 gi|328813750|gb|AEB47922.1| uvrd/rep helicase [Verrucosispora maris AB-18-032]
          Length = 1064

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 39/138 (28%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +++ AS P     + A  G+GKT  L  R+  L    N  P   L +T T+ AA E+ HR
Sbjct: 518 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPEQCLAITFTRRAAEELRHR 577

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  ++   +                                        + V T H+   
Sbjct: 578 LDGLLGPVAE--------------------------------------DVTVGTFHSLGL 599

Query: 142 AIMQQFPLEANITSHFAI 159
            I+++    A +   F I
Sbjct: 600 TILRENAEAAGLPGDFRI 617


>gi|294993862|ref|ZP_06799553.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210]
 gi|326902572|gb|EGE49505.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148]
          Length = 1101

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 14  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 74  LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147


>gi|301511944|ref|ZP_07237181.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB058]
          Length = 469

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q   A+   ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 6   LINELNAQQKKAATTTAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 66  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H FC  ++++ P    +T  F+I D +    +    +
Sbjct: 88  TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125


>gi|219685458|ref|ZP_03540276.1| DNA helicase [Borrelia garinii Far04]
 gi|219673014|gb|EED30035.1| DNA helicase [Borrelia garinii Far04]
          Length = 698

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 49/204 (24%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            E+++ S       V A  GSGKT +++ +++ L+   N +P+ +L LT T  AA EM+ 
Sbjct: 15  QEKIVFSKSKNPILVLAGPGSGKTRVIIAKIVYLIKHMNINPNEILALTFTNKAANEMND 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                            L +QT H+F 
Sbjct: 75  RINDLLKFDKK---------------------------------------LHIQTFHSFG 95

Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
             +++ +    + N  S+F I D     K ++E         +  N E  K     IL+ 
Sbjct: 96  SWLLRVYYKDFDRNYDSNFTIWDTNDVVKFVKEVN-------LAPNFEMAKHIAALILKD 148

Query: 199 SNDEDIETLISDIISNRTALKLIF 222
             +  +E  I         +K+  
Sbjct: 149 KENFFLEKFIKFAEKEYEYIKIYE 172


>gi|306782246|ref|ZP_07420583.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002]
 gi|306794956|ref|ZP_07433258.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|306799158|ref|ZP_07437460.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006]
 gi|308325002|gb|EFP13853.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002]
 gi|308336739|gb|EFP25590.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|308340579|gb|EFP29430.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006]
          Length = 1101

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 14  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 74  LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147


>gi|154499859|ref|ZP_02037897.1| hypothetical protein BACCAP_03516 [Bacteroides capillosus ATCC
           29799]
 gi|150271457|gb|EDM98714.1| hypothetical protein BACCAP_03516 [Bacteroides capillosus ATCC
           29799]
          Length = 830

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 68/232 (29%), Gaps = 85/232 (36%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-------------- 59
           +D  +    ++  A        + A AGSGKT +L+ R+  L+                 
Sbjct: 31  LDYQNLNPEQRKAALATEGPLLLLAGAGSGKTTVLIHRIANLMKYGRGSDCDEVPEWVTA 90

Query: 60  ----------AHPS-------------------TLLCLTHTKAAAAEMSHRVLEIITAWS 90
                     AHP                    +++ +T T  AA E+  R+  ++    
Sbjct: 91  EDLAFLEGYVAHPDPEKKAEQERLCRVDPAVPWSIIAITFTNKAAGELKERLERMLGP-- 148

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                               +   +   T H+ C  I+++    
Sbjct: 149 ------------------------------------SANDIWASTFHSACVRILRRDIDR 172

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
              +  F I D   ++++I++  K       LD+     K+    +  + D 
Sbjct: 173 LGFSKSFTIYDTADAERVIKDIIKDF----NLDDKAFPAKSIVGYISRAKDA 220


>gi|299065225|emb|CBJ36391.1| ATP-dependent DNA helicase [Ralstonia solanacearum CMR15]
          Length = 680

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 30/136 (22%)

Query: 37  SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
            A AGSGKT ++ Q++  L+L     P  +  +T T  AA EM  RV +++   +    +
Sbjct: 2   LAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGKTREDGK 61

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +  +                              L V T H+    I++       +  
Sbjct: 62  RIPIK-----------------------------QLTVCTFHSLGVQILRTEAEHVGLKP 92

Query: 156 HFAIADEEQSKKLIEE 171
            F+I D +    LI+E
Sbjct: 93  RFSIMDSDDCFGLIQE 108


>gi|260654127|ref|ZP_05859617.1| ATP-dependent DNA helicase PcrA [Jonquetella anthropi E3_33 E1]
 gi|260631112|gb|EEX49306.1| ATP-dependent DNA helicase PcrA [Jonquetella anthropi E3_33 E1]
          Length = 673

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 48/201 (23%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
             + S  +  ++  + E ++     +   + A AGSGKT +L +++  L+      P  +
Sbjct: 18  LMDESAWLKGLNDAQKEAVVYL--GKRQLILAGAGSGKTRVLTRKIAWLIDAQRVKPWRI 75

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AA EM  R+   +                                       
Sbjct: 76  LAVTFTNKAAREMLDRLTASLG-------------------------------------- 97

Query: 126 ETPGGLKVQTIHAFCEAIM-QQFPLE--ANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           E   GL+V+T H+F   ++ +               + D   S      A K+ L ++ L
Sbjct: 98  ENLAGLQVRTFHSFGLQMLFRSRAQLEQLGYPPQCVVYDRADSLS----AAKAVLEALNL 153

Query: 183 DNNEELKKAFYEILEISNDED 203
           D  +       E +  + +  
Sbjct: 154 DPEQYTPAWVLETISKAKNSG 174


>gi|238061857|ref|ZP_04606566.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
 gi|237883668|gb|EEP72496.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
          Length = 1062

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 39/138 (28%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +++ AS P     + A  G+GKT  L  R+  L    N  P   L +T T+ AA E+ HR
Sbjct: 517 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPERCLAITFTRRAAEELRHR 576

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  ++   +                                        + V T H+   
Sbjct: 577 LDGLLGPVAE--------------------------------------DITVGTFHSLGL 598

Query: 142 AIMQQFPLEANITSHFAI 159
            I+++    A + + F I
Sbjct: 599 TILRENAGAAGLPADFRI 616


>gi|71902080|ref|ZP_00684118.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
 gi|71728157|gb|EAO30350.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
          Length = 658

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 38/177 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      ++           V A AGSGKT ++V+++  L+ ++ +P   +  +T T  +
Sbjct: 1   MHGLNSPQRAAVLYREGPLLVLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I +                                         GL + 
Sbjct: 61  AKEMRERVAKQIKS-------------------------------------SRADGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           T HA     +Q       +   F++ D + +   I +        ++ D    + +A
Sbjct: 84  TFHALGLKFLQIEHEAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRA 140


>gi|299531352|ref|ZP_07044762.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni S44]
 gi|298720759|gb|EFI61706.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni S44]
          Length = 1270

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 21/194 (10%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T+AA  E+S R+
Sbjct: 24  GSRLIEASAGTGKTWTIAALYLRLVLGHGAENGFARALMPPDILVMTFTRAATRELSDRI 83

Query: 83  LEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              +                 + +  ++           A   L    +      + TI 
Sbjct: 84  RARLIEAVQCFRGEAEPAAHDSFLRDLRDAYAEGELRDTAAWRLDMAAQCMDDAAIHTID 143

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A+C+ ++++   ++   + F    E    +   EA +          + E+ +A  ++  
Sbjct: 144 AWCQRMLREHAFDSG--NLFDETLEADESQRQTEAAQDYWRQQCYPLSGEVLEAALQVW- 200

Query: 198 ISNDEDIETLISDI 211
                D++ L+ D+
Sbjct: 201 ----PDVQALVKDM 210


>gi|325578339|ref|ZP_08148474.1| exodeoxyribonuclease V beta subunit [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160075|gb|EGC72204.1| exodeoxyribonuclease V beta subunit [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 1213

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 75/196 (38%), Gaps = 23/196 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  ++  ++ E +
Sbjct: 20  LIEASAGTGKTYTIGSIYLRLLLQAGENCFSRPLNVEEILVVTFTEMATEDLKRKIRERL 79

Query: 87  TA--------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           T+        +      I + E   +    P   D+  A   L    +      + TIH 
Sbjct: 80  TSAISVFSEYYETKDKAIFTGEHQFLAELLPYLEDIPTALRRLKLAEQNLDLASIYTIHG 139

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  ++ Q    + +  HF +   +    L+++           D    L     + L  
Sbjct: 140 FCRRMLMQHAFNSGV--HFNLKLLKDQSDLLKQFANEFWREHFYDLPFHLAAFISKEL-- 195

Query: 199 SNDEDIETLISDIISN 214
              +  E +++D+ SN
Sbjct: 196 ---KSPEEVLNDLGSN 208


>gi|319941481|ref|ZP_08015809.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805101|gb|EFW01931.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis
           3_1_45B]
          Length = 1191

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 9/167 (5%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           R   + A+AG+GKT  +   VLR +   +   S +L +T T+AA AE+  R+   ++A  
Sbjct: 77  RPTLLEASAGTGKTFSIKHLVLRFVAEEDVSVSRMLIMTFTRAATAELKARIQSHLSAMH 136

Query: 91  HL------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            L         + +  + +         D +     L   L       + TIH FC+ ++
Sbjct: 137 GLMTGTFADSAVDAVLLEQRALWAEQGRDPAVIVSRLRESLAQFDNAGIFTIHGFCQKVL 196

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           +     +  +  F + +      L+EE     + + +L  +E   +A
Sbjct: 197 EDRAFTSGSSIGFELVENVD--DLVEEVVNEFIRTSLLQLSEREDRA 241


>gi|203287798|ref|YP_002222813.1| DNA helicase [Borrelia recurrentis A1]
 gi|201085018|gb|ACH94592.1| DNA helicase [Borrelia recurrentis A1]
          Length = 698

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 42/155 (27%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
             +Q++  D T    V A  GSGKT ++  +   L+      P  +L LT T  AA EM+
Sbjct: 15  DQKQIVFDDTTNPILVLAGPGSGKTRVITAKFAHLINKGKVKPEEILALTFTNKAAREMN 74

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                                       L ++      L +QT H+F
Sbjct: 75  FR---------------------------------------LNSLFNFDRSLHIQTFHSF 95

Query: 140 CEAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172
              +++ +    + N  S+F I D     K +++ 
Sbjct: 96  GAWLLRLYFKEYDENYDSNFTIWDVNDVVKFVKQI 130


>gi|257068318|ref|YP_003154573.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
 gi|256559136|gb|ACU84983.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
          Length = 1094

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 17/199 (8%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           +S    +  ++    T  +  +   P     V A AGSGKT  +  RV+ L+      P 
Sbjct: 12  HSAARLAALLEQPPPTAEQTAVIEAPLAPMLVVAGAGSGKTETMASRVVWLIANGIVEPR 71

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L LT T+ AA E+  R+   + A +        A     +G +    D+   R +   
Sbjct: 72  QVLGLTFTRKAAHELGERIGARLGALAAALRAEGLALP---RGLERGGDDLVGQRPV--- 125

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                    V T + F   ++++  L   I     +     S +L  E  +    S+ L+
Sbjct: 126 ---------VHTYNGFALDLVREHALAVGIDPELTMMSTSASWQLAHEIVEGWDDSLDLE 176

Query: 184 NNEE-LKKAFYEILEISND 201
            +   L  A   +     D
Sbjct: 177 ASPATLTAALLSLTSSLAD 195


>gi|297565832|ref|YP_003684804.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296850281|gb|ADH63296.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 900

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 20/171 (11%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            A+AG+GKT  LV R L LL +      +  +T T+ AA E+  RV E +          
Sbjct: 5   VASAGTGKTASLVLRYLALLASGIPLRRIAGVTFTRKAADELRVRVGEAL---------- 54

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
              E     G   +      +R           G  + TIH F    +++     ++   
Sbjct: 55  ---EDVLSTGCHLDFVCDPVSRPRFEEARRELSGATLTTIHGFMIECLRRTAPLLSLDPD 111

Query: 157 FAIADEEQSKKLIEEAKKSTL-------ASIMLDNNEELKKAFYEILEISN 200
           F++  + +++   EE  +S L         +      E+  A   +    +
Sbjct: 112 FSLIGDWEARAFFEEEWRSLLYLSSDPAHPLFGQAKPEMGDALLHLFAKRS 162


>gi|156743315|ref|YP_001433444.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156234643|gb|ABU59426.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 659

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 56/155 (36%), Gaps = 42/155 (27%)

Query: 14  IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           + L++    +Q  A + P     V A AGSGKT +L  R+  L+      PS +L LT T
Sbjct: 6   MSLLASLNPKQYTAVTAPPGPILVRAGAGSGKTRVLTLRIAYLIAECGVSPSHILALTFT 65

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+  +                                         +  GL
Sbjct: 66  NKAAREMRQRLRNLPGV--------------------------------------SIRGL 87

Query: 132 KVQTIHAFCEAIMQQFPL-EAN-ITSHFAIADEEQ 164
              T H+ C A++++         TS F I  E++
Sbjct: 88  TAGTFHSVCAALLREHITGRIGRYTSDFTIYAEDE 122


>gi|78184983|ref|YP_377418.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
           CC9902]
 gi|78169277|gb|ABB26374.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus
           sp. CC9902]
          Length = 1208

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 15/164 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L    LRL+   A+P   LL +T+T+AAA E+  R+ + +       
Sbjct: 18  LLEASAGTGKTFALAHLTLRLITEAAYPLEALLVVTYTEAAAEELRSRIGQRLQQALVGL 77

Query: 94  DEILSAE--------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +++ +          +     +    +D       L+  LE      + TIH FC   ++
Sbjct: 78  EQLENEMFPSAPDPVMAAWWEQCTASADRRIRIRRLLVALEQLDRADIATIHGFCRRSLR 137

Query: 146 QFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           +  L+    I        E  +  L  E  +      +L   +E
Sbjct: 138 RLALDNGAAIEPQL----ESDAAALQAEVVQYLWQQELLTLPDE 177


>gi|311693105|gb|ADP95978.1| DNA helicase, ATP-dependent, RepA type [marine bacterium HP15]
          Length = 672

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 44/206 (21%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTK 72
           ++ ++  +SE +  +D      V A AGSGKT ++ +++  L+     P   +  +T T 
Sbjct: 1   MNKLNPRQSEAVRYAD--GPMLVLAGAGSGKTSVITRKIAYLIEQLGIPGRHIAAVTFTN 58

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  I+                                           GL 
Sbjct: 59  KAAREMKERVGRIVDRKLTR-------------------------------------GLI 81

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H     ++++          F+I D E +K L+++     L     +  +EL    
Sbjct: 82  VSTFHNLGLNMIREEHTHLGYHPGFSIFDAEDAKALLQDLM---LREASAEAGDELNDIQ 138

Query: 193 YEILEISN-DEDIETLISDIISNRTA 217
             I    N        +S     R  
Sbjct: 139 MTISSWKNAMRGPAEALSKAADEREQ 164


>gi|254788114|ref|YP_003075543.1| ATP-dependent DNA helicase Rep [Teredinibacter turnerae T7901]
 gi|237686994|gb|ACR14258.1| ATP-dependent DNA helicase Rep [Teredinibacter turnerae T7901]
          Length = 673

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 40/161 (24%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTK 72
           ++ ++  + E ++  D      V A AGSGKT ++ Q++  L+     P+  +  +T T 
Sbjct: 1   MNRLNPRQKEAVMYID--GPCLVLAGAGSGKTSVITQKIAYLIQQCDMPARHIAAVTFTN 58

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV +++   +                                       GL 
Sbjct: 59  KAAREMKERVGKLVKGKA-------------------------------------AHGLT 81

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           V T H     I+++        S F+I D E +K L++E  
Sbjct: 82  VSTFHNLGLNIIRRELKHLGYKSGFSIFDAEDAKALLKEIM 122


>gi|28199902|ref|NP_780216.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa
           Temecula1]
 gi|182682653|ref|YP_001830813.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23]
 gi|28058023|gb|AAO29865.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa
           Temecula1]
 gi|182632763|gb|ACB93539.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23]
 gi|307578933|gb|ADN62902.1| ATP-dependent DNA helicase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 658

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 47/232 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      ++           V A AGSGKT ++V+++  L+ ++ +P   +  +T T  +
Sbjct: 1   MHGLNSPQRAAVLYREGPLLVLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I +                                         GL + 
Sbjct: 61  AKEMRERVAKQIKS-------------------------------------SRADGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--- 191
           T HA     +Q       +   F++ D + +   I +        ++ D    + +A   
Sbjct: 84  TFHALGLKFLQIEHEAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRAKNA 143

Query: 192 ------FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                        + D ++ TL +   +   A   + F        +I+E S
Sbjct: 144 GLSPEQALAAARTTRDMEVATLYARYQARLIAFNAVDFDDLIRLPVQILETS 195


>gi|145347097|ref|XP_001418014.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578242|gb|ABO96307.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 657

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 41/155 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++     P  +  V A  GSGKTH+L+ RV  L+      P  +LC+T T  AA E+
Sbjct: 2   NDDQRAAVLAPVGATRVLAGPGSGKTHVLIGRVAHLIHELKTPPREILCITFTNKAAREL 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + I   +                          AR +              T H+
Sbjct: 62  RERLRDKIGDAA--------------------------AREITA-----------GTFHS 84

Query: 139 FCEAIMQQFPLE---ANITSHFAIADEEQSKKLIE 170
               ++++          T  F I D + SK++++
Sbjct: 85  VAARMLRRHGDRIPGIGRTGEFTIYDADDSKQIVQ 119


>gi|220916545|ref|YP_002491849.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954399|gb|ACL64783.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1195

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 20/135 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           VSA AGSGKT  LV+  +RLL  +A      P  L  +T T+ AA E+            
Sbjct: 23  VSAGAGSGKTTALVELCVRLLEGSALGSPCEPRALAAITFTEKAAEELEE-------RLR 75

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                   A      G    ++ + +        L     + V TIH FC  ++++   E
Sbjct: 76  AAVTARARAAREADPGSPEARAWLER--------LHALDAMAVGTIHGFCGRLLREHAPE 127

Query: 151 ANITSHFAIADEEQS 165
           A +    A+ DE+++
Sbjct: 128 AGLDPEAAVLDEDRA 142


>gi|315612932|ref|ZP_07887843.1| DNA helicase II [Streptococcus sanguinis ATCC 49296]
 gi|315315042|gb|EFU63083.1| DNA helicase II [Streptococcus sanguinis ATCC 49296]
          Length = 955

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 34/158 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
             D  +    ++   S       ++A  G+GKT+ LVQR + L+      P  +   T T
Sbjct: 1   MFDFGNANDGQRKAISTTEGPVLITAGPGTGKTYTLVQRAIYLIEECGIKPEEIFIATFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA E+  R+   + +                                   I      +
Sbjct: 61  EKAAKELITRITNELAS---------------------------------RDISVNVNEM 87

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            V T H+ C  I++       +  ++ + D    + L+
Sbjct: 88  YVGTFHSLCLRIIKDNLEYTRLKKNYRLLDTFDQQYLV 125


>gi|296446499|ref|ZP_06888442.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
 gi|296255995|gb|EFH03079.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
          Length = 1135

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 38/167 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ ++  A+       + A  G+GKT  LV RV  L+     P   + LT++  AA E++
Sbjct: 197 TERQRDAAAHRGAPYLLEAGPGTGKTKTLVARVAGLIADGEDPRATVVLTYSNKAACELA 256

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+                                           +    + + T HAF
Sbjct: 257 ERIG--------------------------------------AQHPDAAAAMWIGTFHAF 278

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
              ++Q+F  E    S   + D   +  L+ +   S       D  +
Sbjct: 279 GLNLIQRFHREMGYESEPGLIDRPDAIALLLDRVASLDLKHYRDLYD 325


>gi|206603867|gb|EDZ40347.1| Putative ATP-dependent DNA helicase, UvrD/REP family
           [Leptospirillum sp. Group II '5-way CG']
          Length = 746

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 41/169 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             ++Q   S       V A AGSGKT +++ R+L LL         LL +T T+ AA E+
Sbjct: 7   NPAQQEAVSHEGGPLLVLAPAGSGKTRVVIARLLYLLDRYGWSEERLLVVTFTRKAAREL 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR+                                         +  +     V T H+
Sbjct: 67  LHRI---------------------------------------SRLRPSSRPSWVGTFHS 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNE 186
               +++Q     ++   F I D     ++I +   +  L+   +D  +
Sbjct: 88  VAARMLRQHAERVDLPREFTIVDGPDQLQMIRDLLGRQGLSDKEVDPKK 136


>gi|152964961|ref|YP_001360745.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151359478|gb|ABS02481.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 1125

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 6/151 (3%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A+AG+GKT+ +   V R +         LL +T  +AA AE+  RV E + A
Sbjct: 18  PVATTVLEASAGTGKTYTIAGLVTRYVAEGVATVDQLLVVTFGRAATAELRDRVRERLVA 77

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKA---RHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 +  SA  ++        +D ++A   R  L   L       V TIH FC  ++ 
Sbjct: 78  TRDALADPASARRSRDAVLAHLAADDARAAEHRARLSEALAGFDTATVATIHEFCRQVLT 137

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                A++     + ++     L+EE     
Sbjct: 138 SLGTAADVDPSATLVEDVD--DLVEEVCDDL 166


>gi|163783724|ref|ZP_02178711.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881049|gb|EDP74566.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1]
          Length = 167

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 48/189 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ +     +   V A AGSGKT  L  +V  +L     P  ++LC+T T  AA E+
Sbjct: 3   NPQQERVVRHHGKPLLVVAGAGSGKTKTLAHKVEFILSELGAPRESVLCITFTNKAAKEI 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  +                                               V T H+
Sbjct: 63  GERVYSVTGTELP----------------------------------------WVGTFHS 82

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               +++    +A I  +F++ADE  +K ++ E  KS    I  ++ +++++A   + E 
Sbjct: 83  IAYRLLRA---DAGI--NFSVADESDTKSILRELLKSF--DIRQEDYDKVRRAISRVKED 135

Query: 199 SNDEDIETL 207
             +   E L
Sbjct: 136 LGEIKSEEL 144


>gi|85060368|ref|YP_456070.1| ATP-dependent DNA helicase Rep [Sodalis glossinidius str.
           'morsitans']
 gi|84780888|dbj|BAE75665.1| ATP-dependent DNA helicase Rep [Sodalis glossinidius str.
           'morsitans']
          Length = 675

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 43/179 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+Q      T    V A AGSGKT ++  ++  L+         +  +T T  A+ EM
Sbjct: 4   NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQVRHIAAVTFTNKASREM 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + +                            ++AR           GL V T H 
Sbjct: 64  KERVAQTLGR--------------------------AEAR-----------GLTVATFHT 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              AI+++      + + F++ DE+    L+++     L+   L+ +++L K+    + 
Sbjct: 87  LGLAIIKREYKALGMKAKFSLFDEQDQLALLKD-----LSEQWLEGDKDLLKSLTSAIS 140


>gi|296137089|ref|YP_003644331.1| exodeoxyribonuclease V, beta subunit [Thiomonas intermedia K12]
 gi|295797211|gb|ADG32001.1| exodeoxyribonuclease V, beta subunit [Thiomonas intermedia K12]
          Length = 1202

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 17/164 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P  +L +T T+AA  E++ 
Sbjct: 16  QGSRLIEASAGTGKTWTIAALYLRLVLGHGDEASAFARPLSPEQILVMTFTRAATRELAE 75

Query: 81  RVLEIITAWSH-----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           R+   +   +      ++ +     + ++    P  S    A   L    +      V T
Sbjct: 76  RIRARLVEAAQCFQGTIAPKADDEFLLRLLDSYPPGSARQTAAWRLAMAAQAMDDAAVFT 135

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           I A+C+ ++++   ++  +    +       +L  +A       
Sbjct: 136 IDAWCQRMLREHAFDSGHSFDEDLL--ADEGELTTQAVHDFWRQ 177


>gi|126640515|ref|YP_001083499.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           ATCC 17978]
 gi|126386399|gb|ABO10897.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           ATCC 17978]
          Length = 659

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q   A+   ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 6   LINELNAQQKKAATTKAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 66  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H FC  ++++ P    +T  F+I D +    +    +
Sbjct: 88  TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125


>gi|307700038|ref|ZP_07637087.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
 gi|307614799|gb|EFN94019.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
          Length = 1213

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 23/206 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77
            T+ ++ +   P     V A AGSGKT  +  R++  ++  A  P ++L LT TK A AE
Sbjct: 23  PTEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAE 82

Query: 78  MSHRVLEIITAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           M  R    +   +   ++ +++      E+ +         D SK    + ++      L
Sbjct: 83  MGQRFALRLDNLAQNLEKFVASPSRFEVEMCRQLKGDWQWRDDSKIHGFIRSLTAGLHAL 142

Query: 132 K--------------VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +              V T  A    ++ +F + A   S +    +    +++ +  ++ +
Sbjct: 143 RESGMTSRILRSGVEVSTYDALASKVLTEFGVLAGRDSGYQTITDGTRFQIMSQILETWV 202

Query: 178 ASIMLDNNE--ELKKAFYEILEISND 201
           +++     E   +      +L ++ D
Sbjct: 203 SNLSYREEEGASVGNFIEGLLHLAGD 228


>gi|227875854|ref|ZP_03993980.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|306819135|ref|ZP_07452849.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239]
 gi|227843602|gb|EEJ53785.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|304648111|gb|EFM45422.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239]
          Length = 1213

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 23/206 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77
            T+ ++ +   P     V A AGSGKT  +  R++  ++  A  P ++L LT TK A AE
Sbjct: 23  PTEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAE 82

Query: 78  MSHRVLEIITAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           M  R    +   +   ++ +++      E+ +         D SK    + ++      L
Sbjct: 83  MGQRFALRLDNLAQNLEKFVASPSRFEVEMCRQLKGDWQWRDDSKIHGFIRSLTAGLHAL 142

Query: 132 K--------------VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +              V T  A    ++ +F + A   S +    +    +++ +  ++ +
Sbjct: 143 RESGMTSRILRSGVEVSTYDALASKVLTEFGVLAGRDSGYQTITDGTRFQIMSQILETWV 202

Query: 178 ASIMLDNNE--ELKKAFYEILEISND 201
           +++     E   +      +L ++ D
Sbjct: 203 SNLSYREEEGASVGNFIEGLLHLAGD 228


>gi|260556195|ref|ZP_05828414.1| ATP-dependent DNA helicase PcrA [Acinetobacter baumannii ATCC
           19606]
 gi|260410250|gb|EEX03549.1| ATP-dependent DNA helicase PcrA [Acinetobacter baumannii ATCC
           19606]
          Length = 688

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q  A+    ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 35  LINELNAQQKKAATTMAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 94

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 95  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 116

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H FC  ++++ P    +T  F+I D +    +    +
Sbjct: 117 TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 154


>gi|261367063|ref|ZP_05979946.1| ATP-dependent DNA helicase [Subdoligranulum variabile DSM 15176]
 gi|282571182|gb|EFB76717.1| ATP-dependent DNA helicase [Subdoligranulum variabile DSM 15176]
          Length = 871

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 81/219 (36%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-------------------------- 56
           ++           + A AGSGKT +LV R+  ++                          
Sbjct: 27  QRQAVFTTEGPLLILAGAGSGKTTVLVNRIANIIRFGSAHGSKELPRTVTQQDLEDLRAT 86

Query: 57  ---------------LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI 101
                          +  A P  +L +T T  AA E+  R+  ++               
Sbjct: 87  VQSGRDLPRETAYLAVRPARPWNVLAITFTNKAAGELKERLRAMLGETMG---------- 136

Query: 102 TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161
                                      G +   T H+ C  I+++          F I D
Sbjct: 137 ---------------------------GDVNASTFHSACVRILRRDAERIGFPKSFTIYD 169

Query: 162 EEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            +  ++++++  K     ++ D    +K A  +I    +
Sbjct: 170 SDDQQRVLKQIYKD---KMIDDKFLPIKSAVSQISSYKD 205


>gi|62261380|gb|AAX77985.1| unknown protein [synthetic construct]
          Length = 706

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 40/169 (23%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLL 66
           +   E +D ++Q + + +          V A AGSGKT ++++++  L+    +P  ++L
Sbjct: 22  KHMLEMLDNLNQQQQQAVKYI--ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSIL 79

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T  AA EM  RV   +                          D  K++        
Sbjct: 80  AVTFTNKAAKEMQERVKSRL--------------------------DKEKSK-------- 105

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              GL + T H+   +I+++   E     +F + D   S  LI +    
Sbjct: 106 ---GLMISTFHSLGLSILKKHFNELGYKKNFTLFDSHDSLALIYDIAYD 151


>gi|93005402|ref|YP_579839.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
 gi|92393080|gb|ABE74355.1| ATP-dependent DNA helicase Rep [Psychrobacter cryohalolentis K5]
          Length = 677

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +Q      +    V A AGSGKT ++ +++  L+     P   +  +T T  A
Sbjct: 1   MSQLNPKQQEAMLYVSGPLLVLAGAGSGKTSVITRKIAYLIEECNMPAERITAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++ +                                     E   GL V 
Sbjct: 61  AREMKARVSKLLPS-------------------------------------EKTRGLTVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193
           T H F    ++   L   +  +F+I D + SK+L+ E   +  L+    ++ E + KA  
Sbjct: 84  TFHQFGLQFLRYELLHTPLKGNFSIMDSDDSKRLLMELMMRDNLS--GAESRELVGKAIK 141

Query: 194 EILEISND 201
            I +  ND
Sbjct: 142 MISDWKND 149


>gi|114561615|ref|YP_749128.1| ATP-dependent DNA helicase Rep [Shewanella frigidimarina NCIMB 400]
 gi|114332908|gb|ABI70290.1| ATP-dependent DNA helicase Rep [Shewanella frigidimarina NCIMB 400]
          Length = 670

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 38/157 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT +++ ++  L+         +  +T T  AA
Sbjct: 1   MKLNPGQNEAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GL + T
Sbjct: 61  REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            H     I+++      + + F++ D++ +  L++E 
Sbjct: 84  FHTLGLEIIKREHKVLGLKAGFSLFDDQDTFALLKEL 120


>gi|329895335|ref|ZP_08270960.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC3088]
 gi|328922348|gb|EGG29692.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC3088]
          Length = 664

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 42/162 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  + + +   D      V A AGSGKT ++ Q++  L+      P  ++ +T T  AA
Sbjct: 4   LNPAQRDAVRYLD--GPLLVLAGAGSGKTSVITQKIAYLVEQCELPPKKVVAVTFTNKAA 61

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV                                        +I E   GL V T
Sbjct: 62  REMRTRV---------------------------------------NSICEKAKGLWVST 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            H    +I+++      +   F+I D++ +  +++E     L
Sbjct: 83  FHQLGLSIVRKEHHLLGLRPGFSIFDQQDAVTIMKELLVQEL 124


>gi|58038276|ref|YP_190245.1| DNA helicase II UvrD [Gluconobacter oxydans 621H]
 gi|58000690|gb|AAW59589.1| DNA helicase II UvrD [Gluconobacter oxydans 621H]
          Length = 682

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 39/171 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75
           +S     Q  A+  T    V A AG+GKT  LV  ++ R++     P  +L +T T  AA
Sbjct: 14  LSGLTPSQADAARQTGPVVVLAGAGTGKTKTLVAGIVDRVVKRRMSPDRILAVTFTNKAA 73

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +                                     I + P    V T
Sbjct: 74  GEMKTRIAAAL------------------------------------NIAQAPY--WVGT 95

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            HA     ++  P  A +   F + D E S K++    +  + + +++ ++
Sbjct: 96  FHAHGRRQLRTDPDIAGLRPGFDVCDSEDSTKIVRRLLEKAIEAGVMNADD 146


>gi|87122177|ref|ZP_01078060.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121]
 gi|86162497|gb|EAQ63779.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121]
          Length = 1255

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 12/155 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL                +L +T T+AA AE+  R+   
Sbjct: 25  LIEASAGTGKTYTIANLYLRLLLPIDSKSGFERALTVDEILVVTFTEAATAELKARIRNR 84

Query: 86  ITAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I      L                  +++++     L+   +      + TIH FC+ ++
Sbjct: 85  IREARKALLLGQTKDPFLSQLLASMTEAEIALGVERLLYAEKQMDEAAIFTIHGFCQRML 144

Query: 145 QQFPLEANITSHFAIADEEQS--KKLIEEAKKSTL 177
            Q   E+ +     I  +EQ+     I++  +S +
Sbjct: 145 SQNAFESRMLFQQEIETDEQAPLAMAIKDVWRSNI 179


>gi|262203378|ref|YP_003274586.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
 gi|262086725|gb|ACY22693.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
          Length = 1119

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S    +  + L + T  +  +   P     V A AG+GKT  +  RV+ L+      P  
Sbjct: 3   SATSLAAALGLPTPTAEQAAVIEGPIEPMLVVAGAGAGKTETMAARVVWLVANQLIGPDE 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA+E+  R+   ++  S             ++   P  +  ++ R      
Sbjct: 63  ILGLTFTRKAASELGARIRRRLSMLSGSP---------ALRSWDPEGTLAARLRGADPE- 112

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                   V T HA+   ++  + L   +  +  +  E +  +L
Sbjct: 113 --------VSTYHAYAGRLISDYGLLLPVEPNSTLLSETELWQL 148


>gi|300813620|ref|ZP_07093948.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512256|gb|EFK39428.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 229

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 37/193 (19%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q  ++   ++  + + AG+GKT +L QR + ++   N     +L LT T  A  EM++R
Sbjct: 7   QQKASTILDKNISLISGAGTGKTGVLTQRFINIIKAQNGKFDNILALTFTDKATEEMNNR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +   S+                                       L + TIH+FC+
Sbjct: 67  IYHELAKTSYDF---------------------------------NIDKLNIMTIHSFCK 93

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++  +    +I S+F + ++   + L++E+ K  L++    NNE+      ++      
Sbjct: 94  DLILSYNRYLHINSNFDLDNDFFCQILLKESIKKILSTY---NNEDYLSFLLDLNFSIVP 150

Query: 202 EDIETLISDIISN 214
            D+E +  D+ + 
Sbjct: 151 RDVEAIFFDLYNR 163


>gi|216264361|ref|ZP_03436353.1| DNA helicase [Borrelia burgdorferi 156a]
 gi|215980834|gb|EEC21641.1| DNA helicase [Borrelia burgdorferi 156a]
          Length = 698

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +    + N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SFGSWLLRVYYKDFDENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F +  E
Sbjct: 153 FLEKFIQFTE 162


>gi|239817530|ref|YP_002946440.1| exodeoxyribonuclease V, subunit beta [Variovorax paradoxus S110]
 gi|239804107|gb|ACS21174.1| exodeoxyribonuclease V, beta subunit [Variovorax paradoxus S110]
          Length = 1263

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH------------PSTLLCLTHTKAAAAEMS 79
            S  + A+AG+GKT  +    +RL+L +              PS +L +T T+AA  E+S
Sbjct: 14  GSRLIEASAGTGKTWTIAALYVRLVLGHGASDPDQGFGRPLIPSEILVMTFTRAATRELS 73

Query: 80  HRVLEIITAWSHL----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            R+   +   +      S     + +T++       S  + A   L    E+     V T
Sbjct: 74  DRIRARLLDAARCFRGESPAAGDSLMTELLASYAPGSARTHAAWRLAMAAESMDDAAVHT 133

Query: 136 IHAFCEAIMQQFPLEAN 152
           I A+C+ ++++   ++ 
Sbjct: 134 IDAWCQRMLREHAFDSG 150


>gi|71065150|ref|YP_263877.1| ATP-dependent DNA helicase Rep [Psychrobacter arcticus 273-4]
 gi|71038135|gb|AAZ18443.1| ATP-dependent DNA helicase Rep [Psychrobacter arcticus 273-4]
          Length = 677

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +Q      +    V A AGSGKT ++ +++  L+     P   +  +T T  A
Sbjct: 1   MSQLNPKQQEAMLYVSGPLLVLAGAGSGKTSVITRKIAYLIEECNMPAERITAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++ +                                     E   GL V 
Sbjct: 61  AREMKARVSKLLPS-------------------------------------EKTRGLTVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193
           T H F    ++   L   +  +F+I D + SK+L+ E   +  L+    ++ E + KA  
Sbjct: 84  TFHQFGLQFLRYELLHTPLKGNFSIMDSDDSKRLLMELMMRDNLS--GAESRELVGKAIK 141

Query: 194 EILEISND 201
            I +  ND
Sbjct: 142 MISDWKND 149


>gi|320593539|gb|EFX05948.1| ATP-dependent DNA helicase [Grosmannia clavigera kw1407]
          Length = 1099

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 40/169 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
             +  +D ++  +   +++S  T    + A  GSGKTH L  RV+ L+ A    P  ++ 
Sbjct: 69  NSTSILDSLNPAQRRAVVSSANT--VAILAGPGSGKTHTLTSRVVWLVDALGYRPQDVIV 126

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            T T  AA EM  R+ +++                             + R +++     
Sbjct: 127 ATFTVKAAREMKERIGKVLCDG--------------------------RERRIVL----- 155

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                  T H+     +  +     ++  F+I D+  SK ++    K  
Sbjct: 156 ------GTFHSVARRYLATYGKRIGLSQKFSIIDDADSKAILTRIIKRL 198


>gi|325124416|gb|ADY83939.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 659

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 48/227 (21%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q   A+   ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 6   LINELNAQQKKAATTSAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + +   +                                       GL+  
Sbjct: 66  ASEIVARVEQHVGVQAK--------------------------------------GLRAS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H FC  ++++ P    +   F+I D +    +        L     DN         +
Sbjct: 88  TFHTFCMYLLRRNPQAFGLN-QFSIIDRDDQLLMFR-----LLRGKDKDNVLPKAAELCD 141

Query: 195 ILEISNDED---IETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +   + +      E LI  +         I        +RK     L
Sbjct: 142 LYSYARNTQSKLSEALIKQLPDAYEHKTQIAELMKTYEQRKRERNFL 188


>gi|312149762|gb|ADQ29833.1| DNA helicase [Borrelia burgdorferi N40]
          Length = 698

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +      N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F E  E
Sbjct: 153 FLEKFIEFTE 162


>gi|282858205|ref|ZP_06267396.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
           [Pyramidobacter piscolens W5455]
 gi|282583957|gb|EFB89334.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
           [Pyramidobacter piscolens W5455]
          Length = 558

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 23/187 (12%)

Query: 23  EQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           EQ+ A         V A AG+GKT  L  R +  +L       +L LT T+ AA+EM  R
Sbjct: 30  EQVEAITSEAPLTVVGAGAGTGKTWTLAWRFVWTVLTREDVRHMLTLTFTEKAASEMRRR 89

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +               +A +  ++      +++S+ R      L +     + TIH F  
Sbjct: 90  I---------------AALLADLEPALAASAELSRRR---AAALVSLDQAYISTIHGFGA 131

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEE---AKKSTLASIM-LDNNEELKKAFYEILE 197
            ++ +  L   +     +  + ++ +   E   A     A       + E   A  E+L 
Sbjct: 132 RVIGEAGLSLPVEPSPRLVGDAEASEFWRELAGALDRLDAEWFCWGMDREYGAAARELLN 191

Query: 198 ISNDEDI 204
                D+
Sbjct: 192 GDGAADV 198


>gi|50954629|ref|YP_061917.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951111|gb|AAT88812.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 1125

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 27/196 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S  E ++ + L   T  +Q +   P   A V A AGSGKT  +  RV+ LL         
Sbjct: 35  SALEIADALGLPRPTGQQQAVVEAPLSPAIVVAGAGSGKTETMANRVVWLLANGEVRVPE 94

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA E++ RV + I   +       ++ +T+I+       D++         
Sbjct: 95  VLGLTFTRKAAGELAERVRKRIEQLA-------ASGLTEIEFDPFEAPDVA--------- 138

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                     T +AF  AI ++  L        A+  E  + +L       +    + D 
Sbjct: 139 ----------TYNAFANAIFRENALFIGREPEAAVLSEASAWQLARRVVVDSADDRLADL 188

Query: 185 NEELKKAFYEILEISN 200
           +  +      +L +S 
Sbjct: 189 DRNVDAVTTAVLNLSR 204


>gi|301156242|emb|CBW15713.1| exonuclease V (RecBCD complex), beta subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 1226

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 18/183 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  ++  ++ E +
Sbjct: 20  LIEASAGTGKTYTIGSIYLRLLLQAGENRFSRPLNVEEILVVTFTEMATEDLKRKIRERL 79

Query: 87  TA--------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           TA        +      I + E   +    P   D+  A   L    +      + TIH 
Sbjct: 80  TAAISVFSEYYETKDKAIFTGEHQFLAELLPYLKDIPTALRRLKLAEQNLDLASIYTIHG 139

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           FC  ++ Q    + +  HF +   +    L+++               E+     + L  
Sbjct: 140 FCRRMLMQHAFNSGV--HFNLKLLKDQSDLLKQFANEFWREHFYSQPFEIANFISKELGS 197

Query: 199 SND 201
            +D
Sbjct: 198 PDD 200


>gi|34499523|ref|NP_903738.1| ATP-dependent DNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34105373|gb|AAQ61728.1| ATP-dependent DNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 673

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++  ++  L+     P+  +  +T T  AA EM
Sbjct: 7   NPPQRAAIHYLDGPLLVLAGAGSGKTRVITYKIAHLVREGGIPARHIAAITFTNKAAREM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++++                                         G+ V T H+
Sbjct: 67  LERVGKLMSSAEIR-------------------------------------GITVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               I++Q        + F+I D   + K+I +   +T
Sbjct: 90  LGMHILRQEAPHLGYKTQFSILDAYDAGKIIADILNTT 127


>gi|255326996|ref|ZP_05368072.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296213|gb|EET75554.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 1564

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 26/186 (13%)

Query: 4   HNSFQEHSETI---DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           + S  + +E +   D    T  +  +         V A AGSGKT  +V RV+ L+    
Sbjct: 58  YRSALDIAEMLNGADGKKPTPEQVRMIEAGPAPTLVIAGAGSGKTATMVDRVIWLVDNGF 117

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P  +L +T T+ AA E+  R+   +           S E  +     P          
Sbjct: 118 VRPEEVLGVTFTRKAATELRSRMRAGLNTLRRSRRVAPSDEELREGIADP---------- 167

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                        V T H++   +++++ L   +     +  + Q  +L  +  +     
Sbjct: 168 ------------TVLTYHSYANNLVKEYGLRLGVEQDAQMLGDAQKWQLAAQIVQYWEGE 215

Query: 180 IMLDNN 185
           + LD +
Sbjct: 216 LPLDKD 221


>gi|319950042|ref|ZP_08024010.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319436292|gb|EFV91444.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 511

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 19/176 (10%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           ++ + +   T+ +  + + PT    V A AG+GKT  +  RV+ L+    A P  +L LT
Sbjct: 11  ADALGIHRPTREQAEVIAGPTEPTLVLAGAGAGKTETMAARVVWLVANGHARPGEILGLT 70

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA ++S R+   +       D +  + +    G  P  ++  +             
Sbjct: 71  FTRKAAQQLSRRIRRRL-------DALARSALCTGPGADPAIAEAIRTE----------- 112

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
             ++ T HAF   ++  + L   +     +     + +L  +      + +   +N
Sbjct: 113 DPQISTYHAFAGTLLGTYGLLVPVEPDSRLLTPTAAFQLAHDVVSRWESPLTTGSN 168


>gi|302918178|ref|XP_003052603.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI
           77-13-4]
 gi|256733543|gb|EEU46890.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI
           77-13-4]
          Length = 1057

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L S  ++++   +    +  + A  GSGKTH L  RV+ L+      PS ++  T T  A
Sbjct: 11  LRSLNQAQRRAVTSSASTVAILAGPGSGKTHTLTSRVVWLVQRVGYRPSDVIVATFTVKA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ + +                                       E    + + 
Sbjct: 71  AREMKDRIGKALGE-------------------------------------ECEKKIVLG 93

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+     +  +     + S F IAD+  SK +I+   K  
Sbjct: 94  TFHSIARRYLSIYGNRIGLDSKFGIADDGDSKAIIQRICKRL 135


>gi|224823785|ref|ZP_03696894.1| ATP-dependent DNA helicase Rep [Lutiella nitroferrum 2002]
 gi|224604240|gb|EEG10414.1| ATP-dependent DNA helicase Rep [Lutiella nitroferrum 2002]
          Length = 672

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++  +++ L+         +  +T T  AA EM
Sbjct: 7   NPPQRAAIHYLDGPLLVLAGAGSGKTRVITFKIMHLIREAKMDARNIAAITFTNKAAREM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV +++T                                          GL V T H+
Sbjct: 67  LERVTKLMTPAEVR-------------------------------------GLTVSTFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               I++Q          F+I D   + K+I +  ++T
Sbjct: 90  LGMQILRQEAPHLGYKPQFSILDAYDAGKIISDLLRTT 127


>gi|118497381|ref|YP_898431.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella tularensis
           subsp. novicida U112]
 gi|195536071|ref|ZP_03079078.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|254372746|ref|ZP_04988235.1| ATP-dependent DNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|118423287|gb|ABK89677.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella novicida
           U112]
 gi|151570473|gb|EDN36127.1| ATP-dependent DNA helicase [Francisella novicida GA99-3549]
 gi|194372548|gb|EDX27259.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 671

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++  +
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFI 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|56477159|ref|YP_158748.1| hypothetical protein ebA3053 [Aromatoleum aromaticum EbN1]
 gi|56313202|emb|CAI07847.1| similar to ATP-dependent DNA helicase,putative replication protein
           [Aromatoleum aromaticum EbN1]
          Length = 660

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 38/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++         + V A AGSGKT ++  ++  L+ A   +P  +  +T T  AA EM
Sbjct: 6   NAPQRDAIHYLDGPSLVLAGAGSGKTRVITHKIAHLINACGLNPVNIAAITFTNKAAKEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                         PGGL V T HA
Sbjct: 66  QERVAGLMGGRV-------------------------------------PGGLTVCTFHA 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               I++Q      +   F+I D   + +++ +  + 
Sbjct: 89  LGVKIVRQEAKHCGLKPQFSILDASDTVQIVADITRD 125


>gi|302385714|ref|YP_003821536.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
 gi|302196342|gb|ADL03913.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
          Length = 614

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 61/182 (33%), Gaps = 46/182 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
           +++           V A  GSGKT  +  R+  L+      PS +L +T TKAAA EM  
Sbjct: 10  AQKEAILHHQGPMLVLAGPGSGKTFTITHRICHLIKEYGVDPSNILVITFTKAAAREMKE 69

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R   ++                                         P G+   T HA  
Sbjct: 70  RFESLVDG--------------------------------------RPSGVSFGTFHAIF 91

Query: 141 EAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             I++  +  +A      +I  +EQ  + I+EA       +  D  E +     EI  + 
Sbjct: 92  FRILKFAYRYDAG-----SIVRDEQKIRYIKEAMDKFQVEV-EDEAEFVTSILSEISSVK 145

Query: 200 ND 201
            D
Sbjct: 146 GD 147


>gi|326204932|ref|ZP_08194785.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
 gi|325984981|gb|EGD45824.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
          Length = 1049

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 31/173 (17%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRV 82
           +D  ++  V A AG+GKT+ +V R+  L      P      ++  +T T  AA  M  R+
Sbjct: 340 ADSEKNTLVKAGAGTGKTYSMVSRIAYLCNNKNKPVISLADSIAMVTFTNEAANNMKRRL 399

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            ++   + +L+                            I  +E    ++V TIH F + 
Sbjct: 400 KQLFINYFNLTKNP-----------------------KYIKFIEEVEQMQVSTIHKFAKK 436

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           I+Q    E  +   F++   + S+   E+  +  L + +    +E       +
Sbjct: 437 IIQTAGFELGLGKSFSVTSSDFSR---EKIYEKYLDAYVKRKKDETPDFINSL 486


>gi|310286974|ref|YP_003938232.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium
           bifidum S17]
 gi|309250910|gb|ADO52658.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium
           bifidum S17]
          Length = 1400

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 29/152 (19%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  + + PT     V A AGSGKT+ + +R++ L+        +L LT T+ AA+
Sbjct: 7   TDSPEQAKVVNAPTGDDVLVVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAAS 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   + A          A +                               V T 
Sbjct: 67  ELLSRVSAAVLADGGDERFANRAFLKPE----------------------------VSTY 98

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
            AF + I++Q+ L      +     +  + +L
Sbjct: 99  DAFFQTIVRQYGLLVGFDQNTQPLSQAGAIQL 130


>gi|290973343|ref|XP_002669408.1| predicted protein [Naegleria gruberi]
 gi|284082955|gb|EFC36664.1| predicted protein [Naegleria gruberi]
          Length = 330

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 36/154 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAA 75
           ++  + E + AS+      V +  GSGKT  +  R+  L ++    P  +  +T T  AA
Sbjct: 206 LNSKQLEAVCASEHDC-VCVYSGPGSGKTKTITNRIAYLCIVKGIEPRNVFAMTFTNKAA 264

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R++ ++  +                                   +       + T
Sbjct: 265 QEMKTRLVHLVKLYD------------------------------FQKRINAKDFSHIGT 294

Query: 136 IHAFCEAIMQ-QFPLE---ANITSHFAIADEEQS 165
            HA C  I++ +         +   F I D E+ 
Sbjct: 295 FHAVCANILRNEMHHLTRIVGLDQKFMIFDSEEQ 328


>gi|90019833|ref|YP_525660.1| ATP-dependent DNA helicase Rep [Saccharophagus degradans 2-40]
 gi|89949433|gb|ABD79448.1| ATP-dependent DNA helicase Rep [Saccharophagus degradans 2-40]
          Length = 672

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 38/159 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +    ++         + V A AGSGKT ++ +++  ++         +  +T T  A
Sbjct: 1   MTTLNPRQKEAVHYIDGPSLVLAGAGSGKTSVITRKIAYMIQECGIPARHIAAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++   +                                       GL V 
Sbjct: 61  AREMKERVTKLVKGSA-------------------------------------ARGLTVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H     I+++        S F I D+E ++ LI+E  
Sbjct: 84  TFHNLGLNIIRREHKTLGFKSGFTIFDQEDARGLIKEIM 122


>gi|78045388|ref|YP_361638.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78033892|emb|CAJ19891.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 1103

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 38/154 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ T  ++  A  P R++ V A  G+GKT  L+ R+  LL   A P+ LL LT +  AA 
Sbjct: 198 LTPTDEQRDAARSPVRTSLVVAGPGTGKTATLLMRIEHLLANGAKPAELLVLTFSNRAAR 257

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R                                      L    +     + V T 
Sbjct: 258 ELVDR--------------------------------------LAANGVPDAHEMWVGTF 279

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           HAF    +++      +   F +AD+     L+E
Sbjct: 280 HAFGLEFLRKNHERFGLRPGFGVADKMAQIALLE 313


>gi|169634461|ref|YP_001708197.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           SDF]
 gi|169153253|emb|CAP02354.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter
           baumannii]
          Length = 688

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q  A+    ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 35  LINELNAQQKKAATTMAQNCLVLAGAGCGKTKTIVARAAYLVDQGLPANQIQILTFTRRA 94

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 95  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 116

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H FC  ++++ P    +T  F+I D +    +    +
Sbjct: 117 TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 154


>gi|224371114|ref|YP_002605278.1| PcrA1 [Desulfobacterium autotrophicum HRM2]
 gi|223693831|gb|ACN17114.1| PcrA1 [Desulfobacterium autotrophicum HRM2]
          Length = 619

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 51/153 (33%), Gaps = 37/153 (24%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + +Q         A V A AGSGKT  L  +++ L+     P+ +L +T T  AA EM  
Sbjct: 5   EQQQTAVLHTGSPALVVAGAGSGKTRTLTAKIMHLIGQGFDPTRILAITFTNKAAQEMKS 64

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ ++                                               V+T H+ C
Sbjct: 65  RLYKLSGLGYAKFP-------------------------------------WVRTYHSAC 87

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
             I +    E   +S   I    Q KK++ E  
Sbjct: 88  LVIFKTHSHEIGYSSPIQICSIYQQKKIVTEIL 120


>gi|111115168|ref|YP_709786.1| DNA helicase [Borrelia afzelii PKo]
 gi|216263989|ref|ZP_03435983.1| DNA helicase [Borrelia afzelii ACA-1]
 gi|110890442|gb|ABH01610.1| DNA helicase [Borrelia afzelii PKo]
 gi|215980033|gb|EEC20855.1| DNA helicase [Borrelia afzelii ACA-1]
          Length = 698

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 42/154 (27%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            E+++ +       V A  GSGKT +++ +++ L+   N +P+ +L LT T  AA EM+ 
Sbjct: 15  QEKIVFNKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNINPNEILALTFTNKAANEMND 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                            L +QT H+F 
Sbjct: 75  RINDLLKFDKK---------------------------------------LHIQTFHSFG 95

Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172
             +++ +    + N  S+F I D     + +++ 
Sbjct: 96  AWLLRCYYKDFDKNYDSNFTIWDTNDVVRFVKQI 129


>gi|331245511|ref|XP_003335392.1| DNA helicase II [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309314382|gb|EFP90973.1| DNA helicase II [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 979

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 44/223 (19%)

Query: 17  ISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           ++     QL A       S  + A  GSGKT +L  R+  LL      P +L+ +T T  
Sbjct: 10  LNSLNQNQLKAVQRPADGSLQILAGPGSGKTRVLTYRIAYLLRKCGISPPSLVAVTFTNK 69

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +A EM HR+  +I          L++E+                                
Sbjct: 70  SAKEMQHRLAALIGG-------SLASEVIL------------------------------ 92

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H  C   +++   +  +  ++ I D +Q  +  + A      S  + +     K   
Sbjct: 93  GTFHGMCVTFLRKHGSKIGLRPNWVICDRDQQLQYGKSALNDPQFSEQVQDQSIKPKTVV 152

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
           E +  +  +       +++  R A        + L+R K+   
Sbjct: 153 EAISKAKSQGYSP--EEML--RQAETSYQKLMAALYREKLFRS 191


>gi|148642118|ref|YP_001272631.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061]
 gi|148551135|gb|ABQ86263.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061]
          Length = 1505

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 35/130 (26%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79
             E  +  D  +   + A  GSGKT +L++RV  LL      P +LL +T TK AA E+ 
Sbjct: 460 DQEAAVMYDGKKPLLIEAGPGSGKTTVLIERVKYLLNNKGIDPESLLVITFTKKAANELK 519

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ E     S L  +                                   +++ TIH F
Sbjct: 520 TRLSEETDNISELDVQ----------------------------------KMQISTIHGF 545

Query: 140 CEAIMQQFPL 149
           C  I+++   
Sbjct: 546 CAKILEKAGY 555


>gi|87124723|ref|ZP_01080571.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917]
 gi|86167602|gb|EAQ68861.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917]
          Length = 1214

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 21/168 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L   VLRL+   +   + LL +T T AAAAE+  R+   +       
Sbjct: 17  LLEASAGTGKTFALAHLVLRLITERDLDLNQLLVVTFTDAAAAELRDRIGRRLEQALQGL 76

Query: 94  DEILSAEITKIQGKKPNKSDMS---------------KARHL---LITILETPGGLKVQT 135
             I + E +        + +                 + R L   L++ LE+     + T
Sbjct: 77  LAIQTPEDSAAAQCGAAQQEADPVLRDWLARQGQEAGRCRELASRLLSALESLERADITT 136

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           IH FC   +Q+  L++      A+  E  S +L  E         +L 
Sbjct: 137 IHGFCRRTLQRQALQSGQAMDPAL--ESDSDRLCREVAHDYWQQQVLQ 182


>gi|304415298|ref|ZP_07395988.1| DNA helicase and single-stranded DNA-dependent ATPase [Candidatus
           Regiella insecticola LSR1]
 gi|304282853|gb|EFL91326.1| DNA helicase and single-stranded DNA-dependent ATPase [Candidatus
           Regiella insecticola LSR1]
          Length = 690

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 38/176 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63
           +  +  S+  +      S+Q      +    V A AGSGKT +++ ++  L+     H  
Sbjct: 7   DPAESSSKMRNPRQLNVSQQQAVEFVSGPCLVLAGAGSGKTRVIINKIAYLIGHCGYHTR 66

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +  +T T  AA EM  RV + +                                     
Sbjct: 67  HVAAVTFTNKAAREMKERVAQTLGNKETR------------------------------- 95

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                 GL + T H     I+++  +   + ++F++ D      L++E  +  +  
Sbjct: 96  ------GLMISTFHTLGLEIIKREYVALGMKANFSLFDAYDQMALLKELTQQWIKE 145


>gi|291551268|emb|CBL27530.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14]
          Length = 954

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 56/198 (28%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
             +  +  ++++   S       ++A  G+GKT  LV+R + L+      P  ++  T T
Sbjct: 1   MFNYGNANEAQKEAISATDGLVLITAGPGTGKTFTLVKRAVYLIQECGIKPEQIMMATFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA E+  R+   +                                     I      +
Sbjct: 61  EKAAKELITRITNELAE---------------------------------RNISVNVNEM 87

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + T H+ C  I+++      +  ++ + D    K L+                      
Sbjct: 88  YIGTFHSLCLRIIKENLEFTRLKRNYRLLDTFDQKYLV---------------------- 125

Query: 192 FYEILEISNDEDIETLIS 209
           F       N E I+ L+S
Sbjct: 126 FRNFHRFKNIEGIDELLS 143


>gi|283457707|ref|YP_003362293.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133708|dbj|BAI64473.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1594

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 26/186 (13%)

Query: 4   HNSFQEHSETI---DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           + S  + +E +   D    T  +  +         V A AGSGKT  +V RV+ L+    
Sbjct: 63  YRSALDIAEMLNGADGKKPTPEQVRMIEAGPAPTLVIAGAGSGKTATMVDRVIWLVDNGF 122

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P  +L +T T+ AA E+  R+   +           S E  +     P          
Sbjct: 123 VRPEEVLGVTFTRKAATELRSRMRAGLNTLRRSRRVAPSDEELREGIADP---------- 172

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                        V T H++   +++++ L   +     +  + Q  +L  +  +     
Sbjct: 173 ------------TVLTYHSYANNLVKEYGLRLGVEQDAQMLGDAQKWQLAAQIVQYWEGE 220

Query: 180 IMLDNN 185
           + LD +
Sbjct: 221 LPLDKD 226


>gi|226320437|ref|ZP_03796004.1| DNA helicase [Borrelia burgdorferi 29805]
 gi|226234190|gb|EEH32904.1| DNA helicase [Borrelia burgdorferi 29805]
          Length = 698

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M++R+ +++                                            L +QT H
Sbjct: 72  MNNRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +      N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F E  E
Sbjct: 153 FLEKFIEFTE 162


>gi|71278734|ref|YP_267066.1| ATP-dependent DNA helicase Rep [Colwellia psychrerythraea 34H]
 gi|71144474|gb|AAZ24947.1| ATP-dependent DNA helicase Rep [Colwellia psychrerythraea 34H]
          Length = 677

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 47/183 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           +    V A AGSGKT ++ Q++  L+   +     +  +T T  AA EM  R+ +++   
Sbjct: 15  SGPCLVLAGAGSGKTGVICQKIAYLIQKCDYKARNIAAVTFTNKAAREMKERIQKMLGR- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D+++             GL V T H+    I+++   
Sbjct: 74  -----------------------DLTR-------------GLTVSTFHSLGLDIVRREIK 97

Query: 150 EANITSHFAIADEEQSKKLIEEAK-------KSTLASIMLDNNEELKKAFY--EILEISN 200
                  F + D++ S  L++E         K  L+ +    +      F   + L+ ++
Sbjct: 98  ILGYKPGFTLFDDQDSLALLKELTIDELDGDKDLLSKLQSKISNWKNDLFLPDDALKSAS 157

Query: 201 DED 203
           D D
Sbjct: 158 DAD 160


>gi|239626681|ref|ZP_04669712.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516827|gb|EEQ56693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1121

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 45/163 (27%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64
           + Q  ++ +D ++  + + + +  P     V A  G+GKT  LV R+  L+      P+ 
Sbjct: 510 ASQTGADVLDGLNPNQRQAVGSISPVT--AVIAGPGTGKTKTLVSRLSYLIGERGVKPAE 567

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +  +T T  AA E+  R+   +     L                                
Sbjct: 568 ITAVTFTNKAAEELRQRIRRQLPGKRSL-------------------------------- 595

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167
                 ++V T H+ C  ++Q      N  +  ++ADE Q ++
Sbjct: 596 ----NQMQVGTFHSLCYRMLQ------NQGTGLSLADEGQQQE 628


>gi|157156759|ref|YP_001464364.1| UvrD family helicase [Escherichia coli E24377A]
 gi|157078789|gb|ABV18497.1| helicase, UvrD family [Escherichia coli E24377A]
          Length = 630

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 50/226 (22%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++ + +++ +   P   +  V A+AGSGKT +L +RV R +L N     ++ LT T  AA
Sbjct: 1   MNLSNAQRQIVEAPMDIAIQVLASAGSGKTRVLTERV-RYILNNTKRDAVIALTFTNKAA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EMS R+ +                        P++                   + + T
Sbjct: 60  EEMSSRLSDF----------------------DPDE-----------------DRVWIAT 80

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+  + I++++     + S   I D ++ +    E    +L    +D +E L  +  + 
Sbjct: 81  IHSVAQRILEKYGHTIGLPSDLYIYDRDKDRM---EVFMQSLREDGIDIDEYL--SIADS 135

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
            E+ N E       DI S      L  F  S L+     + ++W I
Sbjct: 136 KELKNRERNLQSYMDIFSKIKRELLTEFEVSELYP----DNNIWKI 177


>gi|83649062|ref|YP_437497.1| ATP-dependent DNA helicase Rep [Hahella chejuensis KCTC 2396]
 gi|83637105|gb|ABC33072.1| ATP-dependent DNA helicase Rep [Hahella chejuensis KCTC 2396]
          Length = 672

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 43/187 (22%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +SQ    Q  A         V A AGSGKT ++ +++  L+         +  +T T  A
Sbjct: 1   MSQLNPRQREAVKYIDGPLLVLAGAGSGKTSVITRKIAYLIEECGLKAKHIAAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  +++  +                                       GL V 
Sbjct: 61  AREMKERVSALVSGPA-------------------------------------ARGLTVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     I++       +   F+I D++  K +I    K  L     +  E++ +    
Sbjct: 84  TFHNLGMNIIRLEHKAVGLKPGFSIFDQQDCKAII----KDLLFKEFDEAEEDVDQLQAH 139

Query: 195 ILEISND 201
                ND
Sbjct: 140 FSNWKND 146


>gi|224282512|ref|ZP_03645834.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139664|ref|ZP_07801857.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132174|gb|EFR49791.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
          Length = 1401

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 29/152 (19%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  + + PT     V A AGSGKT+ + +R++ L+        +L LT T+ AA+
Sbjct: 7   TDSPEQAKVVNAPTGDDVLVVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAAS 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   + A          A +                               V T 
Sbjct: 67  ELLSRVSAAVLADGGDERFANRAFLKPE----------------------------VSTY 98

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
            AF + I++Q+ L      +     +  + +L
Sbjct: 99  DAFFQTIVRQYGLLVGFDQNTQPLSQAGAIQL 130


>gi|220903357|ref|YP_002478669.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867656|gb|ACL47991.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 768

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 72/217 (33%), Gaps = 47/217 (21%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID        Q   A+       V A AGSGKT  +V R+  L      P ++L LT T
Sbjct: 1   MIDYAQALNEAQYEAATSGDGPVLVVAGAGSGKTRTIVYRLAWLAENGVSPESMLLLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM HR   ++                                           G+
Sbjct: 61  RKAAQEMLHRAGLLLD--------------------------------------HGLSGV 82

Query: 132 KVQTIHAFCEAIMQQF--PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           +  T HAF  ++++++     A+    F + D       I  A K     + L   ++  
Sbjct: 83  QGGTFHAFAFSVLRRWKPAWLADRP--FTVMDAAD----ITSAVKHCRDDLKLGKGDKSF 136

Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFS 226
                ++ + +    + L  D +  R A  L+    S
Sbjct: 137 PKTQTVVGLLSKARNKELPLDEVLRREAFHLLPHAES 173


>gi|46205528|ref|ZP_00048428.2| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 239

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 38/154 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             S++  A        + A  G+GKT  LV R+ RLL   A  S +L LT +  AA E+ 
Sbjct: 91  DDSQRAAAFHEGTPFLLQAGPGTGKTRTLVSRIERLLDRGATASEILVLTFSNKAAGELV 150

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                                      L   + E      + T H F
Sbjct: 151 ER--------------------------------------LTARLPEAAAAAWIGTFHGF 172

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
              +++QF     +     + D+  +  ++E+  
Sbjct: 173 GLDVLRQFHDRDGLPDDPRLMDKADAVGMLEDLV 206


>gi|282890920|ref|ZP_06299436.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499204|gb|EFB41507.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 1167

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 14/131 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
            + A+AG+GKT  +   ++RLLL N       +L +T T+AA  ++  R+ E I      
Sbjct: 16  VLEASAGTGKTFSIENIIVRLLLENPPVTIQEILVVTFTRAATHDLKVRIRENIEKALSF 75

Query: 93  SDEIL----------SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
              +L             +  IQG+ P +  + + +  L   L      ++ TIH+FC  
Sbjct: 76  LQGLLLSPHYCYQEAPDYLKAIQGRDPEE--IKEIKKRLEHALFEYDQAQIFTIHSFCLR 133

Query: 143 IMQQFPLEANI 153
            ++    E ++
Sbjct: 134 TLKTHFFEGDL 144


>gi|184156771|ref|YP_001845110.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|294841925|ref|ZP_06786608.1| putative ATP-dependent DNA helicase [Acinetobacter sp. 6014059]
 gi|183208365|gb|ACC55763.1| Superfamily I DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|322506663|gb|ADX02117.1| ATP-dependent DNA helicase [Acinetobacter baumannii 1656-2]
 gi|323516538|gb|ADX90919.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 659

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           LI++  ++Q  A+    ++  V A AG GKT  +V R   L+      + +  LT T+ A
Sbjct: 6   LINELNAQQKKAATTMAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 66  ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H FC  ++++ P    +T  F+I D +    +    +
Sbjct: 88  TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125


>gi|190572176|ref|YP_001970021.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas
           maltophilia K279a]
 gi|190010098|emb|CAQ43706.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas
           maltophilia K279a]
          Length = 658

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 48/205 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +            V A AGSGKT ++V+++  L+ +  +P   +  +T T  +
Sbjct: 1   MHGLNPPQAAAVLHIEGPLLVLAGAGSGKTRVIVEKIAHLIGSGRYPARRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + +                                       +    + + 
Sbjct: 61  AKEMRERVAKRLRE-------------------------------------QDADEVTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA     +Q       +   F+I D + +   I++        +M     +  +    
Sbjct: 84  TFHALGLKFLQIEHAAVGLKRGFSIFDADDAAAQIKD--------LMYGAKPDDIEDMKN 135

Query: 195 ILEISNDEDI--ETLISDIISNRTA 217
           ++  + +  +  E  ++   SNR  
Sbjct: 136 LVSRAKNAGLSPEQAMAAARSNREK 160


>gi|187918214|ref|YP_001883777.1| DNA helicase II [Borrelia hermsii DAH]
 gi|119861062|gb|AAX16857.1| DNA helicase II [Borrelia hermsii DAH]
          Length = 697

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 42/154 (27%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            +Q++  D      V A  GSGKT ++  ++  L+      P  +L LT T  AA EM+ 
Sbjct: 15  QKQIVLDDTKNPILVLAGPGSGKTRVITAKITHLIKEMKLRPEEILALTFTNKAANEMNF 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R                                       L  +      L +QT H+F 
Sbjct: 75  R---------------------------------------LNYLFNLNKALHIQTFHSFG 95

Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172
             +++ +    + N  S+F I D     + +++ 
Sbjct: 96  AWLLRLYFKEFDKNYDSNFTIWDTNDVVRFVKQI 129


>gi|120553399|ref|YP_957750.1| ATP-dependent DNA helicase Rep [Marinobacter aquaeolei VT8]
 gi|120323248|gb|ABM17563.1| ATP-dependent DNA helicase Rep [Marinobacter aquaeolei VT8]
          Length = 672

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 43/188 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTK 72
           ++ ++  + E +  +D      V A AGSGKT ++ +++  L+     P   +  +T T 
Sbjct: 1   MNKLNPRQHEAVRYAD--GPLLVLAGAGSGKTSVITRKIAYLIEELGIPGRHIAAVTFTN 58

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  I+                          D  K R L+           
Sbjct: 59  KAAREMKERVGRIV--------------------------DRGKTRGLI----------- 81

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           V T H     ++++          F+I D E +K L+++     +     +  +EL    
Sbjct: 82  VSTFHNLGLNMIREEHTHLGYHPGFSIFDAEDAKALLQDLM---MREASAEAGDELNDVQ 138

Query: 193 YEILEISN 200
             I    N
Sbjct: 139 MTISSWKN 146


>gi|308377259|ref|ZP_07441669.2| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008]
 gi|308348310|gb|EFP37161.1| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008]
          Length = 695

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 57  ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 116

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   + +                                   
Sbjct: 117 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 154

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                V T HAF  ++++ + L   +     +  E +  +L
Sbjct: 155 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 190


>gi|307546980|ref|YP_003899459.1| ATP-dependent DNA helicase Rep [Halomonas elongata DSM 2581]
 gi|307219004|emb|CBV44274.1| ATP-dependent DNA helicase Rep [Halomonas elongata DSM 2581]
          Length = 685

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 40/159 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  + E + A D      V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 12  LNPRQREAVKAID--GPCLVLAGAGSGKTSVITTKIAYLVQECGMSARRIAAVTFTNKAA 69

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                           GL+V T
Sbjct: 70  REMKERVGQMLKGRE-------------------------------------AHGLRVST 92

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            H     I++           F++ D E +K L+ +   
Sbjct: 93  FHTLGLNIIRGELKALGYKPGFSLFDPEDAKALLRDLMN 131


>gi|311063850|ref|YP_003970575.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
 gi|310866169|gb|ADP35538.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 1400

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 29/152 (19%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +  +  + + PT     V A AGSGKT+ + +R++ L+        +L LT T+ AA+
Sbjct: 7   TDSPEQAKVVNAPTGDDVLVVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAAS 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV   + A          A +                               V T 
Sbjct: 67  ELLSRVSAAVLADGGDERFANRAFLKPE----------------------------VSTY 98

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
            AF + I++Q+ L      +     +  + +L
Sbjct: 99  DAFFQTIVRQYGLLVGFDQNTQPLSQAGAIQL 130


>gi|251773028|gb|EES53584.1| putative ATP-dependent DNA helicase, UvrD/REP family
           [Leptospirillum ferrodiazotrophum]
          Length = 796

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
              ++L  +       V A AGSGKT ++++R+L L+  +     +    T T+ AA E+
Sbjct: 22  NPEQRLAVTHEEGPLLVLAPAGSGKTRVVIERLLFLIERSGRGGESFFVATFTRKAAREL 81

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +       D  L                                   V T H+
Sbjct: 82  VERISHRL------PDARLPY---------------------------------VGTFHS 102

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               ++++    A +   F ++D    K L+ E  + 
Sbjct: 103 LSARLLRRLADRAGLPPDFTVSDAGDQKALVREIMRR 139


>gi|89091856|ref|ZP_01164811.1| ATP-dependent DNA helicase Rep [Oceanospirillum sp. MED92]
 gi|89083591|gb|EAR62808.1| ATP-dependent DNA helicase Rep [Oceanospirillum sp. MED92]
          Length = 669

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +S+    Q  A +  +    V A AGSGKT ++ +++  L+         +  +T T  A
Sbjct: 1   MSRLNPRQKEAVEYISGPLLVLAGAGSGKTSVITRKIAYLINQCGIEARNIAAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  RV  ++                                       +   GL V 
Sbjct: 61  SREMKERVTSLLEG-------------------------------------KNAKGLTVA 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H     I+++          F+I D++ +K L+++  
Sbjct: 84  TFHNLGLTIIKREYKTLGFKPGFSIFDDQDTKALLKDLM 122


>gi|304309876|ref|YP_003809474.1| ATP-dependent DNA helicase participating in chromosome replication
           [gamma proteobacterium HdN1]
 gi|301795609|emb|CBL43808.1| ATP-dependent DNA helicase participating in chromosome replication
           [gamma proteobacterium HdN1]
          Length = 668

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 38/171 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +      +Q           V A AGSGKT ++ +++  L+       + ++ +T T  A
Sbjct: 1   MKDLNPRQQEAVRYIDGPLLVLAGAGSGKTSVITRKIAHLVQKCGIPANRIVAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  RV  +I+                           ++AR           GL V 
Sbjct: 61  SREMKERVGHLISG--------------------------AEAR-----------GLTVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           T H     I+++      + + F+I D++ S+ L+ E      A    D +
Sbjct: 84  TFHNLGLNILRKEHKSVGLKNGFSIFDDQDSRSLLTELSHKETAVAGEDVD 134


>gi|15594689|ref|NP_212478.1| DNA helicase (uvrD) [Borrelia burgdorferi B31]
 gi|2688234|gb|AAC66713.1| DNA helicase (uvrD) [Borrelia burgdorferi B31]
          Length = 699

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 13  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 72

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 73  MNDRINDLLKFDKK---------------------------------------LHIQTFH 93

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +      N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 94  SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 153

Query: 188 LKKAFYEILE 197
             + F +  E
Sbjct: 154 FLEKFIQFTE 163


>gi|78356631|ref|YP_388080.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219036|gb|ABB38385.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 1067

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 27/186 (14%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS----------------TLLCLTHTKAAAAEMS 79
           + A+AGSGKT+ L    L  L A +  S                 +L +T T  AA EM 
Sbjct: 5   IKASAGSGKTYRLTGEFLDRLRAASEESSAACALAPAGAAYCWPEILAVTFTNKAATEMQ 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R++  +   +        A      G          AR  + T+L     L V+TI + 
Sbjct: 65  ERIIRTLKERALGMGASGPAADWPASG----------ARRWVNTMLRRYSSLNVRTIDSL 114

Query: 140 CEAIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
              +++   LE  +   F  + DEE+    + E       S      ++L  A   +L  
Sbjct: 115 LHMLVRLCALELGLPPDFEPVFDEEEIFTPLYERMLEQARSGSHQLRQQLVDASESLLYH 174

Query: 199 SNDEDI 204
           ++ +  
Sbjct: 175 ADMQGF 180


>gi|332084974|gb|EGI90156.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 155-74]
          Length = 654

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 43/184 (23%)

Query: 37  SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
            A AGSGKT ++  ++  L+         +  +T T  AA EM  RV + +         
Sbjct: 2   LAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR------- 54

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +AR           GL + T H     I+++      + +
Sbjct: 55  -------------------KEAR-----------GLMISTFHTLGLDIIKREYAALGMKA 84

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLISDIISN 214
           +F++ D+     L++E  +  +     D+   L++    I    ND +      +  I  
Sbjct: 85  NFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKNDLKTPSQAAASAIGE 140

Query: 215 RTAL 218
           R  +
Sbjct: 141 RDRI 144


>gi|269977489|ref|ZP_06184461.1| UvrD/REP helicase [Mobiluncus mulieris 28-1]
 gi|269934405|gb|EEZ90967.1| UvrD/REP helicase [Mobiluncus mulieris 28-1]
          Length = 1213

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 23/206 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77
            T+ ++ +   P     V A AGSGKT  +  R++  ++  A  P ++L LT TK A AE
Sbjct: 23  PTEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAE 82

Query: 78  MSHRVLEIITAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           M  R    +   +   ++ +++      E+ +         D SK    + ++      L
Sbjct: 83  MGQRFALRLDNLAQNLEKFVASPSSFEVEMCRQLKGDWQWRDDSKIHGFIRSLTAGLHTL 142

Query: 132 K--------------VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +              V T  A    ++ +F + A   S +    +    +++ +  ++ +
Sbjct: 143 QESGMTSRILRSGVEVSTYDALASKVLTEFGVLAGRDSGYQTITDGTRFQIMSQILETWV 202

Query: 178 ASIMLDNNE--ELKKAFYEILEISND 201
           +++     E   +      +L ++ D
Sbjct: 203 SNLSYREEEGASVGNFIEGLLHLAGD 228


>gi|256374998|ref|YP_003098658.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919301|gb|ACU34812.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 1349

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 19/181 (10%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
           H S  + ++ + L   T  +  + + P   A V A AG+GKT  +  RV+ L+      P
Sbjct: 18  HASPADIADALGLHPPTPEQAAVIASPAAPALVVAGAGAGKTETMAARVVYLVANGVVTP 77

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L LT T+ AA ++  RV   +   +                 + + S   +A  L  
Sbjct: 78  DRVLGLTFTRKAARQLGERVRGRLRRLAGSP-----------LLDELDPSGRRRAAVLTT 126

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             +       V T HA+   ++ +  L   +     +  E  + +L      +    +  
Sbjct: 127 EPV-------VLTYHAYAGRLVGEHGLRLPVEPGVRLLTETAAWQLAHRVVSAWTQDLDT 179

Query: 183 D 183
           D
Sbjct: 180 D 180


>gi|315506913|ref|YP_004085800.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315413532|gb|ADU11649.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1061

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 39/138 (28%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +++ AS P     + A  G+GKT  L  R+  L    N  P   L +T T+ AA E+ HR
Sbjct: 517 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPDQCLAITFTRRAAEELRHR 576

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  ++   +                                        + V T H+   
Sbjct: 577 LDGLLGPVAE--------------------------------------DVTVGTFHSLGL 598

Query: 142 AIMQQFPLEANITSHFAI 159
            ++++    A + + F I
Sbjct: 599 TVLRENATAAGLPADFRI 616


>gi|78358610|ref|YP_390059.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221015|gb|ABB40364.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 719

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 47/215 (21%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID   +  + Q   A+       V A AGSGKT  +V R+  ++      S +L LT T
Sbjct: 1   MIDYKKELNAAQYEAATTLEGPMLVIAGAGSGKTRTVVYRLANMVQQGIAASNILLLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM HR                                   A  LL       GG+
Sbjct: 61  RKAAQEMQHR-----------------------------------AAQLLGQSAGMVGGV 85

Query: 132 KVQTIHAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           +  T HAF  +I++       E ++    ++ D   +   ++  K     ++ L   +  
Sbjct: 86  QGGTFHAFAYSILRMHKPQGYEGDL----SVMDSADAAGALKHCKD----TLGLGKGDRS 137

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFF 223
                 ++ + +    + L  + +  R A  L  +
Sbjct: 138 FPKTQTVMGLLSKARNKELTVEDVLRREAFHLASY 172


>gi|296271994|ref|YP_003654625.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096169|gb|ADG92119.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 684

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 37/163 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I L    +S+Q  A     S  + A AGSGKT  +  R+  L+     P+++L LT T  
Sbjct: 4   IFLSGLNESQQKAAKHIDGSLLILAGAGSGKTKTITTRLAYLISIGIDPTSILTLTFTNK 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R   +I +       +                                     
Sbjct: 64  AATEMRERAYAMIGSNMSTPPIL------------------------------------- 86

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H F    ++ +  E    ++F I D +  K+++   +K  
Sbjct: 87  CTFHKFGLLFLKFYMSELKRKNNFIIIDTDDKKRILRTIEKDI 129


>gi|288921364|ref|ZP_06415644.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288347216|gb|EFC81513.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1138

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 13/166 (7%)

Query: 12  ETIDLIS--QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
           +  DL+    T  +   A+ P   A V A AGSGKT ++  RV+ L+      P  +L L
Sbjct: 37  DLRDLLGVPYTDEQLAAATAPLEPAVVIAGAGSGKTSVMAARVVWLVATRQVEPGRVLGL 96

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AAAE++ RV   +   +         +     G  P     S +           
Sbjct: 97  TFTNKAAAELAGRVRLALRRAAEAGRGPGEGQGQGRPGDGPGPGAGSGS----------G 146

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               + T HA+   ++ +  L   +     +       +L     +
Sbjct: 147 DEPTISTYHAYAGRLVGEHALRLGLEPDTRMLVAAARYQLAARVVR 192


>gi|309810384|ref|ZP_07704218.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
 gi|308435624|gb|EFP59422.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
          Length = 1176

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 21/169 (12%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S    ++ ++    T  +  +   P     V A AGSGKT  +  RV+ L+      P  
Sbjct: 28  SADAIADALERYHHTPEQVAVIEAPLEPLLVVAGAGSGKTDTMASRVVWLVANGLVRPQE 87

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA E++ RV + +                      P+  D +       ++
Sbjct: 88  ILGLTFTRKAAGELAERVNQRLRMLEASG-----------LWSPPDDPDGT------PSL 130

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            E+P    + T +A+   I+ +  L   I     +  E  + +   E  
Sbjct: 131 GESP---TISTYNAYAGRIVGEHGLRLGIEPDARMLSEAAAWQFAHEVA 176


>gi|254672842|emb|CBA07038.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           alpha275]
          Length = 1204

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKESRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|326383310|ref|ZP_08204998.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198060|gb|EGD55246.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1117

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 19/163 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
            +  +  + L   T  +  +   P     V A AG+GKT  +  RV+ L+      P  +
Sbjct: 9   ARSLASALGLPQPTPEQIEVIEAPMEPMLVVAGAGAGKTETMASRVVWLVANRLVGPEEI 68

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT T+ AA+E++ R+   ++  +             +    P     S+ R       
Sbjct: 69  LGLTFTRKAASELAARIRRRLSMLAGSP---------ALLEWDPGGELASRLRS------ 113

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                 +V T HA+   ++  + L   +     +  E +  +L
Sbjct: 114 ---ADAEVSTYHAYAGRLIADYGLLLPVEPTATLLSETELWQL 153


>gi|309390072|gb|ADO77952.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 677

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 39/172 (22%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L++    +Q +A+   T    V A AGSGKT  L  R   L+        +L +T T  A
Sbjct: 4   LLNDLNPKQKIAAQTLTGPVLVLAGAGSGKTRTLTYRTANLIQNGVSHQNILTVTFTNRA 63

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A +M  ++ ++I +                                     E    + + 
Sbjct: 64  ADDMKAKIGKLIGS-------------------------------------EIIDEMNLG 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185
           T H+ C  I+++   + N      I D + S  ++E+      L +   D  
Sbjct: 87  TFHSICLKILRENLNKINRAEGCLIYDTKDSLAIVEDIIFDFGLEATEYDPK 138


>gi|261856567|ref|YP_003263850.1| exodeoxyribonuclease V subunit beta [Halothiobacillus neapolitanus
           c2]
 gi|261837036|gb|ACX96803.1| exodeoxyribonuclease V, beta subunit [Halothiobacillus neapolitanus
           c2]
          Length = 1259

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 12/131 (9%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----PSTLLCLTHTKAAAAEMSHRVLEII 86
             S  + A+AG+GKT  +    +RL+L +      P  +L  T T AAA E+  R+   +
Sbjct: 20  AGSRLIEASAGTGKTFTIALLYVRLVLGHGTEPLMPPQILVTTFTDAAADELRDRIRARL 79

Query: 87  --------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                    A S L    +   +  ++   P   +   A   L           + TIH 
Sbjct: 80  FEAYRIFSEAGSELDPIAVDPYLLDLRAAFPTSEERLAAARRLEMAANWMDEAAIFTIHG 139

Query: 139 FCEAIMQQFPL 149
           +C+ ++ +   
Sbjct: 140 WCQRMLNEHAF 150


>gi|296114709|ref|ZP_06833360.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978743|gb|EFG85470.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 166

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 39/143 (27%)

Query: 15  DLISQTKSEQLLASDPTR----------SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           D +S+    Q  A                  V A AGSGKT+ L  RV  L+ + A P  
Sbjct: 13  DYLSRLNEAQRQAVTHGTGVSAGGADSSPLLVIAGAGSGKTNTLAHRVAHLIASGADPRR 72

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT ++ A+ EM+ RV  I           L+  +                       
Sbjct: 73  ILLLTFSRRASVEMTRRVERICKTVLGDKAGPLADAL----------------------- 109

Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147
                     T H+    +++++
Sbjct: 110 ------AWAGTFHSIGARLLREY 126


>gi|221069391|ref|ZP_03545496.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1]
 gi|220714414|gb|EED69782.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1]
          Length = 1270

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 21/194 (10%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82
            S  + A+AG+GKT  +    LRL+L +           P  +L +T T+AA  E+S R+
Sbjct: 24  GSRLIEASAGTGKTWTIAALYLRLVLGHGAENGFARALMPPDILVMTFTRAATRELSDRI 83

Query: 83  LEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
            + +                 + +  ++      ++   A   L    +      + TI 
Sbjct: 84  RDRLIEAVQCFRGEAEPAAHDSFLRDLRDAYAEGTERDTAAWRLDMAAQCMDDAAIHTID 143

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           A+C+ ++++   ++   + F    E    +   EA +          + E+ +    +  
Sbjct: 144 AWCQRMLREHAFDSG--NLFDETLEADESQRQTEAAQDYWRQQCYPLSGEVLETALHVW- 200

Query: 198 ISNDEDIETLISDI 211
                D+  L+ D+
Sbjct: 201 ----PDVHALVKDM 210


>gi|223888779|ref|ZP_03623370.1| DNA helicase [Borrelia burgdorferi 64b]
 gi|223885595|gb|EEF56694.1| DNA helicase [Borrelia burgdorferi 64b]
          Length = 698

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +      N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F +  E
Sbjct: 153 FLEKFIQFTE 162


>gi|196018414|ref|XP_002118799.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens]
 gi|190578180|gb|EDV18715.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens]
          Length = 863

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 47/225 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E S  + ++S+TK +   AS     A   A AG+GKT +L  RV+ L+    A PS +L 
Sbjct: 380 EFSNFVGILSKTKVKLDQASKAIGDAEYKAGAGTGKTKVLTSRVIHLINKGFAFPSQILA 439

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T     EM     + +   S                                     
Sbjct: 440 VTFT--IGNEMKQEFEKFLNNIS------------------------------------- 460

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G + + T H+    I+++        + F I +++   +LI++  K       LD+   
Sbjct: 461 -GSMNIGTFHSMAAKILRRHAELIGYNTDFTIINQDDQIRLIKQLIKDF----GLDDKNT 515

Query: 188 LKKAFYEILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWR 230
             K     +    D  I  + L S  + +    KL   +  Y  R
Sbjct: 516 SAKVLLYYINRFKDRAIMPKNLSSQEVEHYANGKLNEIYCEYQNR 560


>gi|218249690|ref|YP_002374864.1| DNA helicase [Borrelia burgdorferi ZS7]
 gi|226321661|ref|ZP_03797187.1| DNA helicase [Borrelia burgdorferi Bol26]
 gi|218164878|gb|ACK74939.1| DNA helicase [Borrelia burgdorferi ZS7]
 gi|226232850|gb|EEH31603.1| DNA helicase [Borrelia burgdorferi Bol26]
          Length = 698

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +F   +++ +      N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F +  E
Sbjct: 153 FLEKFIQFTE 162


>gi|27905008|ref|NP_778134.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|32129937|sp|Q89A21|REP_BUCBP RecName: Full=ATP-dependent DNA helicase rep
 gi|27904406|gb|AAO27239.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 670

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 38/158 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +   + ++   S  +    + A AGSGKT +++ +++ L+ + +  P  +  +T T  AA
Sbjct: 1   MLFNEHQKKAISYISGPCLILAGAGSGKTRVIINKIVHLIKICHFDPKCITAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+L +++                                     +     +K+ T
Sbjct: 61  CEMKSRILNVLS-------------------------------------VNVSNLVKIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            HA    I++      NI S+F I DE+    +++E  
Sbjct: 84  FHALGLEIIKSEIELLNIKSNFTIFDEQDQISILQEIV 121


>gi|293603085|ref|ZP_06685519.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC
           43553]
 gi|292818479|gb|EFF77526.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC
           43553]
          Length = 687

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 55/200 (27%)

Query: 9   EHSETI-DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
             SETI   ++  + E +L  D      V A AGSGKT ++ Q++  LL         ++
Sbjct: 2   SASETIAQGMNPAQREAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVV 59

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T  AA EM  RV  ++                                        
Sbjct: 60  ALTFTNKAAREMDERVKTLVDRKLSK---------------------------------- 85

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK------------ 174
              GL + T H+    ++++    A +   F+I D + +  +I+E               
Sbjct: 86  ---GLIISTFHSLGVKMLREEARNAGLKPTFSILDADDAMSIIQELLATTDKARLRHVQG 142

Query: 175 --STLASIMLDNNEELKKAF 192
             S   + +++ ++  ++A 
Sbjct: 143 IISLWKNALMEPDDAAREAV 162


>gi|109896401|ref|YP_659656.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas atlantica T6c]
 gi|109698682|gb|ABG38602.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas atlantica T6c]
          Length = 671

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 74/201 (36%), Gaps = 46/201 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75
           +     +    +  +    V A AGSGKT ++  ++  L+     P+  +  +T T  A+
Sbjct: 1   MKLNPGQNDAVNYISGPCLVLAGAGSGKTRVITNKIAYLVRECDIPARYIAAVTFTNKAS 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GLKV T
Sbjct: 61  REMKERVAQTLGR--------------------------KEAR-----------GLKVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++       + + F++ D++ S  L+++     L  + L  ++E  +     
Sbjct: 84  FHTLGLRIIKTEVKTLGLKAGFSLFDDKDSMALLKD-----LTDVELGGDKEQLQLLQSC 138

Query: 196 LEISNDEDIETLISDIISNRT 216
           +   ++   + L+ + +  RT
Sbjct: 139 I---SNWKNDLLLPEQLLKRT 156


>gi|225549079|ref|ZP_03770054.1| DNA helicase [Borrelia burgdorferi 94a]
 gi|225370305|gb|EEG99743.1| DNA helicase [Borrelia burgdorferi 94a]
          Length = 698

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +    +++ +    + N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SLGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F E  E
Sbjct: 153 FLEKFIEFTE 162


>gi|21233561|ref|NP_639478.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770527|ref|YP_245289.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993747|ref|YP_001905757.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21115421|gb|AAM43360.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575859|gb|AAY51269.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735507|emb|CAP53722.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris]
          Length = 658

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 48/205 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +            V A AGSGKT ++V+++  L+    +P   +  +T T  +
Sbjct: 1   MHGLNPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I                                       +   GL + 
Sbjct: 61  AKEMRERVAKRIRG-------------------------------------DGADGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA     +Q     A +   F+I D + +   I++        +M     +  +    
Sbjct: 84  TFHALGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKD--------LMHGAKPDAIEDAKN 135

Query: 195 ILEISNDEDI--ETLISDIISNRTA 217
           ++  + +  +  E  ++   SNR  
Sbjct: 136 LISRAKNAGMSPEQAMAAARSNREK 160


>gi|221217822|ref|ZP_03589290.1| DNA helicase [Borrelia burgdorferi 72a]
 gi|224533705|ref|ZP_03674293.1| DNA helicase [Borrelia burgdorferi CA-11.2a]
 gi|221192499|gb|EEE18718.1| DNA helicase [Borrelia burgdorferi 72a]
 gi|224512998|gb|EEF83361.1| DNA helicase [Borrelia burgdorferi CA-11.2a]
          Length = 698

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +    +++ +    + N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SLGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F E  E
Sbjct: 153 FLEKFIEFTE 162


>gi|217970262|ref|YP_002355496.1| exodeoxyribonuclease V subunit beta [Thauera sp. MZ1T]
 gi|217507589|gb|ACK54600.1| exodeoxyribonuclease V, beta subunit [Thauera sp. MZ1T]
          Length = 1321

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 17/164 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80
             S  + A+AG+GKT  +    LRL+L +            P+ +L +T T+AA  E+S 
Sbjct: 13  RGSRLIEASAGTGKTWTIAALYLRLVLGHGDADTAFARPLLPAEILVMTFTRAATRELSE 72

Query: 81  RVLEIITAWS-----HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           R+ E +   +       +       + +++   P+ +    A   L           V T
Sbjct: 73  RIRERLREAAAWFRNEDAGRAPDPLLDELRAAYPDAAARRNAAWRLAMAAAAMDDAAVFT 132

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           I A+C+ ++++   ++       +A       L+ EA +     
Sbjct: 133 IDAWCQRMLREHAFDSGNPFDEELA--ADESVLLTEAAQDYWRQ 174


>gi|218708696|ref|YP_002416317.1| exodeoxyribonuclease V subunit beta [Vibrio splendidus LGP32]
 gi|218321715|emb|CAV17669.1| Exodeoxyribonuclease V beta chain [Vibrio splendidus LGP32]
          Length = 1224

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 25/168 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH------------------PSTLLCLTHTKAAAA 76
            + A+AG+GKT  +    LRLLL +                       +L +T T+AA A
Sbjct: 27  LIEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDLTEATRHHEPLTVDQILVVTFTEAATA 86

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   I           S +       +        A+ LL           V TI
Sbjct: 87  ELRDRIRARIHDARIAFARGQSDDPVIAPLLQAIDDHAGAAKTLL-NAERQMDEAAVYTI 145

Query: 137 HAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           H FC+ ++ Q   E+     + F + DE     L  +           
Sbjct: 146 HGFCQRMLTQNAFESGSRFDNEF-VTDESH---LKAQVVADYWRKQFY 189


>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
 gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
          Length = 855

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           I     +Q +     ++  + ++AG+GKT  L  R+  ++  + A    +LCLT T  A 
Sbjct: 4   IYFNDKQQKVIDTLDKNILLLSSAGTGKTKTLSSRIGNIIDKSLASGDEILCLTFTNRAC 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  +++E +                                            + V+T
Sbjct: 64  KEMKEKIIETVGKEGL--------------------------------------KVTVKT 85

Query: 136 IHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172
            H+FC  ++++   +  +I+  F I DEE +K++I E 
Sbjct: 86  FHSFCFDVIKKEAKKNTDISFDFTIYDEEDTKEIISEL 123


>gi|325273681|ref|ZP_08139889.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. TJI-51]
 gi|324101185|gb|EGB98823.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. TJI-51]
          Length = 669

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRPGEGR-------------------------------------GLTVCTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIMQ 123


>gi|225550062|ref|ZP_03771022.1| DNA helicase [Borrelia burgdorferi 118a]
 gi|225369174|gb|EEG98627.1| DNA helicase [Borrelia burgdorferi 118a]
          Length = 698

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            T  E+++ S       V A  GSGKT +++ +++ L+   N  P+ +L LT T  AA E
Sbjct: 12  NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +++                                            L +QT H
Sbjct: 72  MNDRINDLLKFDKK---------------------------------------LHIQTFH 92

Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187
           +    +++ +    + N  S+F I D     K ++        E  K   A I+ D    
Sbjct: 93  SLGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152

Query: 188 LKKAFYEILE 197
             + F E  E
Sbjct: 153 FLEKFIEFTE 162


>gi|254374203|ref|ZP_04989685.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548]
 gi|151571923|gb|EDN37577.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548]
          Length = 671

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFN 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|331005810|ref|ZP_08329167.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC1989]
 gi|330420371|gb|EGG94680.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC1989]
          Length = 674

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 39/160 (24%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +S     Q  A+        V A AGSGKT ++ +++  L+         +  LT T  A
Sbjct: 1   MSTLNPRQREATHYIDGPCLVLAGAGSGKTSVITRKIAYLIEECGLSARNIAALTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++                                           GL V 
Sbjct: 61  AKEMKERVSALLKGTG-------------------------------------ARGLTVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H     I+++          F+I D E  + L++E  +
Sbjct: 84  TFHNLGLNIIRRDHTLFGYKPGFSIFDSEDCRSLLKEIMQ 123


>gi|302870676|ref|YP_003839313.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302573535|gb|ADL49737.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1061

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 39/138 (28%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +++ AS P     + A  G+GKT  L  R+  L    N  P   L +T T+ AA E+ HR
Sbjct: 517 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPDQCLAITFTRRAAEELRHR 576

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  ++   +                                        + V T H+   
Sbjct: 577 LDGLLGPVAE--------------------------------------DVTVGTFHSLGL 598

Query: 142 AIMQQFPLEANITSHFAI 159
            ++++    A + + F I
Sbjct: 599 TVLRENATAAGLPADFRI 616


>gi|261392848|emb|CAX50429.1| exodeoxyribonuclease V beta chain [Neisseria meningitidis 8013]
          Length = 1204

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|86145658|ref|ZP_01063988.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222]
 gi|85836629|gb|EAQ54755.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222]
          Length = 1224

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 25/168 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH------------------PSTLLCLTHTKAAAA 76
            + A+AG+GKT  +    LRLLL +                       +L +T T+AA A
Sbjct: 27  LIEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDLTEATRHHEPLTVDQILVVTFTEAATA 86

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   I           S +       +        A+ LL           V TI
Sbjct: 87  ELRDRIRARIHDARIAFARGQSDDPVIAPLLQAIDDHAGAAKTLL-NAERQMDEAAVYTI 145

Query: 137 HAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           H FC+ ++ Q   E+     + F + DE     L  +           
Sbjct: 146 HGFCQRMLTQNAFESGSRFDNEF-VTDESH---LKAQVVADYWRKQFY 189


>gi|311103603|ref|YP_003976456.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8]
 gi|310758292|gb|ADP13741.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8]
          Length = 677

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 40/161 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  + E +L  D      V A AGSGKT ++ Q++  LL         ++ LT T  AA
Sbjct: 1   MNPAQREAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAA 58

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV  ++                                           GL + T
Sbjct: 59  REMDERVKTLVDRKLSK-------------------------------------GLIIST 81

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+    ++++    A +   F+I D + +  +I+E   +T
Sbjct: 82  FHSLGVKMLREEARNAGLKPTFSILDADDAMAIIQELLNTT 122


>gi|254804663|ref|YP_003082884.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           alpha14]
 gi|254668205|emb|CBA04955.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           alpha14]
          Length = 1204

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D  LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAELGDGALSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|212702577|ref|ZP_03310705.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098]
 gi|212674018|gb|EEB34501.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098]
          Length = 1095

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 38/181 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA--------------NAHP---STLLCLTHTKAAAAEM 78
           V A+AGSGKT+ L +R L LL A                 P     +L +T T AAA EM
Sbjct: 7   VKASAGSGKTYDLTRRFLCLLAACGSPAPAAAASCGLGNGPSGWDEILAITFTNAAAGEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV+  + A +  + E            K        A   L  IL     L ++TI +
Sbjct: 67  RDRVIGRLKAIALGTPE------------KDIPLTPDMAARWLDVILRDLASLNIRTIDS 114

Query: 139 FCEAIMQQFPLEANITSHFA---IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
              AI++   L+ ++   F    ++ +  +  L       TL +     NE ++K   ++
Sbjct: 115 LLHAIVRSASLQLDLPPDFQPAFVSMDAVTPYL------DTLLNQASQGNEAMEKLLRDL 168

Query: 196 L 196
            
Sbjct: 169 Y 169


>gi|167036302|ref|YP_001671533.1| ATP-dependent DNA helicase Rep [Pseudomonas putida GB-1]
 gi|166862790|gb|ABZ01198.1| ATP-dependent DNA helicase Rep [Pseudomonas putida GB-1]
          Length = 669

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRPGEGR-------------------------------------GLTVCTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIMQ 123


>gi|104784309|ref|YP_610807.1| ATP-dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95113296|emb|CAK18024.1| ATP-dependent DNA helicase [Pseudomonas entomophila L48]
          Length = 669

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVGTLLRPGEGR-------------------------------------GLTVCTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIMQ 123


>gi|254367778|ref|ZP_04983799.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica 257]
 gi|134253589|gb|EBA52683.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica 257]
          Length = 671

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFN 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|194363828|ref|YP_002026438.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
           R551-3]
 gi|194346632|gb|ACF49755.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
           R551-3]
          Length = 658

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +            V A AGSGKT ++V+++  L+    +P   +  +T T  +
Sbjct: 1   MHGLNPPQAAAVLHIEGPLLVLAGAGSGKTRVIVEKIAHLIGCGRYPARRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + +                                       +    + + 
Sbjct: 61  AKEMRERVAKRLRE-------------------------------------QDADEVTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA     +Q       +   F+I D + +   I++        +M     +  +    
Sbjct: 84  TFHALGLKFLQIEHAAVGLKRGFSIFDADDAAAQIKD--------LMYGAKPDDIEDMKN 135

Query: 195 ILEISNDEDI--ETLISDIISNRTA 217
           ++  + +  +  E  ++   SNR  
Sbjct: 136 LVSRAKNAGLSPEQAMAAARSNREK 160


>gi|220913223|ref|YP_002488532.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
 gi|219860101|gb|ACL40443.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
          Length = 1167

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 18/158 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  + S P     V A AGSGKT  +  RV+ L+      P  +L +T T+ AA E
Sbjct: 43  PTAEQSAIISSPLTPRLVIAGAGSGKTATMADRVVWLVANGWVRPEEVLGVTFTRKAAGE 102

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ R+   + A   ++     A +        +  +                  KV T H
Sbjct: 103 LASRIRAKLVALQRVAARGAGAPMFPAGMISSDALEP-----------------KVSTYH 145

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           +F   I+  + L   +     +    Q+ +L  E  ++
Sbjct: 146 SFASGIVSDYGLRLGVERDVVLLGGAQAWQLATEVVEA 183


>gi|56708170|ref|YP_170066.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670641|ref|YP_667198.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254370654|ref|ZP_04986659.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|56604662|emb|CAG45720.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320974|emb|CAL09103.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568897|gb|EDN34551.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|282159383|gb|ADA78774.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 671

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFN 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|328676870|gb|AEB27740.1| ATP-dependent DNA helicase Rep [Francisella cf. novicida Fx1]
          Length = 671

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFN 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|308449677|ref|XP_003088040.1| hypothetical protein CRE_17775 [Caenorhabditis remanei]
 gi|308250192|gb|EFO94144.1| hypothetical protein CRE_17775 [Caenorhabditis remanei]
          Length = 679

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 42/187 (22%)

Query: 18  SQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           SQ   +QL A         V A AGSGKT ++ +++  L+         +  +T T  AA
Sbjct: 5   SQLNDKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQQCGIPAHRITAMTFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV +++                                       E   GL V T
Sbjct: 65  REMKERVGKLLGK-------------------------------------EEGKGLSVST 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNEELKKAFYE 194
            H F   +++       + ++F+I D +  K+++ +   +  L+    ++ E + KA  +
Sbjct: 88  FHTFGLNLLRIELKNTPLKNNFSILDADDCKRILMDLMHRDNLS--GAESKELIAKAMKK 145

Query: 195 ILEISND 201
           I +  ND
Sbjct: 146 ISDWKND 152


>gi|304387905|ref|ZP_07370078.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC
           13091]
 gi|304338002|gb|EFM04139.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC
           13091]
          Length = 1212

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 28  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 87

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 88  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 147

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 148 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 186


>gi|134302295|ref|YP_001122264.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050072|gb|ABO47143.1| ATP-dependent DNA helicase/UvrD/REP helicase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 671

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFN 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|89256441|ref|YP_513803.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314876|ref|YP_763599.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502543|ref|YP_001428608.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290953919|ref|ZP_06558540.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312719|ref|ZP_06803462.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144272|emb|CAJ79555.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129775|gb|ABI82962.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253146|gb|ABU61652.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 671

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFN 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|325203871|gb|ADY99324.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           M01-240355]
          Length = 1204

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 32/198 (16%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEIT--------------KIQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I               ++  +   K   ++    L   +     
Sbjct: 80  ESKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--EEAKKS------TLASIML 182
             + TIH FC+ I++ +           + +E+  + LI  ++  +        LA++  
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLIPAQDFWRERVSNDPVLAALAF 199

Query: 183 DNNEELKKAFYEILEISN 200
                 +    +I    +
Sbjct: 200 KRKAVPQTVLAQISRYLS 217


>gi|325144177|gb|EGC66484.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           M01-240013]
          Length = 1204

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEIT--------------KIQGKKPNKSDMSKARHLLITILETPGG 130
                + L D  LS  I               ++  +   K   ++    L   +     
Sbjct: 80  ESKEIAELGDGALSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVEMTEEDGDRLLI 178


>gi|254523343|ref|ZP_05135398.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14]
 gi|219720934|gb|EED39459.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14]
          Length = 658

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +            V A AGSGKT ++V+++  L+    +P   +  +T T  +
Sbjct: 1   MHGLNPPQAAAVLHIEGPLLVLAGAGSGKTRVIVEKIAHLIGCGRYPARRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + +                                       +    + + 
Sbjct: 61  AKEMRERVAKRLRE-------------------------------------QDADEVTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA     +Q       +   F+I D + +   I++        +M     +  +    
Sbjct: 84  TFHALGLKFLQIEHAAVGLKRGFSIFDADDAAAQIKD--------LMYGAKPDDIEDMKN 135

Query: 195 ILEISNDEDI--ETLISDIISNRTA 217
           ++  + +  +  E  ++   SNR  
Sbjct: 136 LVSRAKNAGLSPEQAMAAARSNREK 160


>gi|299541749|ref|ZP_07052077.1| UvrD/REP helicase [Lysinibacillus fusiformis ZC1]
 gi|298725744|gb|EFI66380.1| UvrD/REP helicase [Lysinibacillus fusiformis ZC1]
          Length = 625

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 58/225 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   T+ +  + +    S  V+A  GSGKT +L +R+++LL  N +   +L LT +  AA
Sbjct: 1   MFPLTEKQLEIVNHIDGSLLVTAGPGSGKTRVLTERIIQLL--NLNKKRILALTFSNKAA 58

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E++ R+   +                                       +    + V T
Sbjct: 59  EEITERLKLGVEE-------------------------------------DRFENVFVGT 81

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  ++        + S   + + +  +    E  K   A +             E 
Sbjct: 82  IHSFCLDVVMNRGNLIGLPSGLTLFENDADRI---EILKRVFAEM---------PDIGEF 129

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240
           ++ + D+    L+ + ++  + LK      +Y+    + +  + S
Sbjct: 130 MDENRDK--RNLLKNCLNKISKLK-----QAYISPEVLSDSQIES 167


>gi|289666279|ref|ZP_06487860.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 658

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 38/173 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              +            V A AGSGKT ++V+++  L+    +P   +  +T T  +A EM
Sbjct: 5   NPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + I                                       +   GL + T HA
Sbjct: 65  RERVAKRIRG-------------------------------------DGADGLTICTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                +Q     A +   F+I D + +   I++         + D    + +A
Sbjct: 88  LGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKDLMHGAKPDAIEDAKNLISRA 140


>gi|92115316|ref|YP_575244.1| ATP-dependent DNA helicase Rep [Chromohalobacter salexigens DSM
           3043]
 gi|91798406|gb|ABE60545.1| ATP-dependent DNA helicase Rep [Chromohalobacter salexigens DSM
           3043]
          Length = 682

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 50/160 (31%), Gaps = 38/160 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      +Q  A        V A AGSGKT ++  ++  L+         +  +T T  A
Sbjct: 11  LAKLNPRQQEAARYIDGPCLVLAGAGSGKTSVITTKIAYLIQECGMSARKIAAVTFTNKA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV E++                                           GL V 
Sbjct: 71  AREMKERVGEMLQGREG-------------------------------------HGLTVS 93

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H     I++           F++ D E +K L+ +  +
Sbjct: 94  TFHTLGLNIIRGELKTLGYKPGFSLFDPEDAKALLRDLMQ 133


>gi|308388971|gb|ADO31291.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           alpha710]
 gi|325129902|gb|EGC52703.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           OX99.30304]
 gi|325135992|gb|EGC58602.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M0579]
          Length = 1204

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|32968002|gb|AAP92515.1| DNA helicase [Borrelia hermsii]
          Length = 646

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 42/154 (27%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            +Q++  D      V A  GSGKT ++  ++  L+      P  +L LT T  AA EM+ 
Sbjct: 15  QKQIVLDDTKNPILVLAGPGSGKTRVITAKITHLIKEMKLRPEEILALTFTNKAANEMNF 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R                                       L  +      L +QT H+F 
Sbjct: 75  R---------------------------------------LNYLFNLNKALHIQTFHSFG 95

Query: 141 EAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEA 172
             +++ +  E +    S+F I D     + +++ 
Sbjct: 96  AWLLRLYFKEFDKNYDSNFTIWDTNDVVRFVKQI 129


>gi|15676683|ref|NP_273827.1| exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis
           MC58]
 gi|7226017|gb|AAF41198.1| exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis
           MC58]
 gi|316983777|gb|EFV62758.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           H44/76]
 gi|325140061|gb|EGC62590.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis CU385]
 gi|325200529|gb|ADY95984.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           H44/76]
          Length = 1204

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 75/198 (37%), Gaps = 32/198 (16%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRGRLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEIT--------------KIQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I               ++  +   K   ++    L   +     
Sbjct: 80  ESKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--EEAKKS------TLASIML 182
             + TIH FC+ I++ +           + +E+  + LI  ++  +        LA++ L
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVEMTEEDGDRLLIPAQDFWRERVSNDPVLAALAL 199

Query: 183 DNNEELKKAFYEILEISN 200
                 +    +I    +
Sbjct: 200 KRKAVPQTVLAQISRYLS 217


>gi|332171790|gb|AEE21044.1| ATP-dependent DNA helicase Rep [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 671

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 50/216 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75
           +     +    +  +    V A AGSGKT ++  ++  L+     P+  +  +T T  A+
Sbjct: 1   MKLNPGQNDAVNYISGPCLVLAGAGSGKTRVITNKIAYLVRECDIPARYIAAVTFTNKAS 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR           GLKV T
Sbjct: 61  REMKERVAQTLGR--------------------------KEAR-----------GLKVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++       + + F++ D++ S  L+++     L  + L  +++  +     
Sbjct: 84  FHTLGLRIIKAEVKTLGLKAGFSLFDDKDSMALLKD-----LTDVELGGDKDQLQLLQSC 138

Query: 196 LEISNDEDIETLISDIISNRT----ALKLIFFFFSY 227
           +   ++   + L+ + +  RT      +   F+  Y
Sbjct: 139 I---SNWKNDLLLPEQLLKRTSSAGDAEFAEFYQRY 171


>gi|223040190|ref|ZP_03610469.1| acyl carrier protein [Campylobacter rectus RM3267]
 gi|222878551|gb|EEF13653.1| acyl carrier protein [Campylobacter rectus RM3267]
          Length = 677

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 30/216 (13%)

Query: 17  ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQ   A+ P     V A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3   LSKLNQEQYAAATAPAGHNLVIASAGTGKTSTIVARIAHLLNLGVKPEKILLLTFTNKAA 62

Query: 76  AEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           AEM  R+      +I +  +  +   +S  + K   K       S+ + LL +++E    
Sbjct: 63  AEMIERLNRHFDKKITSRITAGTFHSVSYSLLKFLEKPVTLKQPSELKTLLKSLVER--- 119

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE--- 187
                         ++F   +++  +      +        A K T    + + ++E   
Sbjct: 120 --------------RKFNHLSDVKPYGGAYLYDAYSLFQNLALKQTFGEWLKERSDEQGV 165

Query: 188 ----LKKAFYEILEISNDEDIETLISDIISNRTALK 219
                +    E  E  +  D       +I  R  LK
Sbjct: 166 YAEIYEDVLREFEEEKSKFDYADFNDLLIKMRNELK 201


>gi|208779175|ref|ZP_03246521.1| UvrD/REP helicase family protein [Francisella novicida FTG]
 gi|208744975|gb|EDZ91273.1| UvrD/REP helicase family protein [Francisella novicida FTG]
          Length = 671

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFN 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|325202419|gb|ADY97873.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           M01-240149]
 gi|325207829|gb|ADZ03281.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 1204

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|325142010|gb|EGC64442.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           961-5945]
 gi|325198004|gb|ADY93460.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis G2136]
          Length = 1204

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|50083734|ref|YP_045244.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ADP1]
 gi|49529710|emb|CAG67422.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ADP1]
          Length = 672

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L+ +   +Q   A+   +   V A AG GKT  ++ R   L+        +  LT T+ A
Sbjct: 22  LMGELNPQQHRAATTQAQHCLVLAGAGCGKTKTIIARAAHLIHRGTPADQIQILTFTRRA 81

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+E+  RV + + A +                                       GL+  
Sbjct: 82  ASEIVTRVEQHLGAPAK--------------------------------------GLRAS 103

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H FC  ++++ P    +   F I D +    +    +
Sbjct: 104 TFHTFCMYLLRRNPQAFGL-GQFTIIDRDDQMLMFRLLR 141


>gi|289667974|ref|ZP_06489049.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 658

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 38/173 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              +            V A AGSGKT ++V+++  L+    +P   +  +T T  +A EM
Sbjct: 5   NPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + I                                       +   GL + T HA
Sbjct: 65  RERVAKRIRG-------------------------------------DGADGLTICTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                +Q     A +   F+I D + +   I++         + D    + +A
Sbjct: 88  LGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKDLMHGAKPDAIEDAKNLISRA 140


>gi|161869731|ref|YP_001598898.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442]
 gi|161595284|gb|ABX72944.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442]
          Length = 1204

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|26991940|ref|NP_747365.1| ATP-dependent DNA helicase Rep [Pseudomonas putida KT2440]
 gi|148550374|ref|YP_001270476.1| ATP-dependent DNA helicase Rep [Pseudomonas putida F1]
 gi|24987067|gb|AAN70829.1|AE016727_5 ATP-dependent DNA helicase Rep [Pseudomonas putida KT2440]
 gi|148514432|gb|ABQ81292.1| ATP-dependent DNA helicase Rep [Pseudomonas putida F1]
 gi|313501239|gb|ADR62605.1| Rep [Pseudomonas putida BIRD-1]
          Length = 669

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVATLLRPGEGR-------------------------------------GLTVCTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++          F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIMQ 123


>gi|78049939|ref|YP_366114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78038369|emb|CAJ26114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 658

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 38/173 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              +            V A AGSGKT ++V+++  L+    +P   +  +T T  +A EM
Sbjct: 5   NPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + I                                       +   GL + T HA
Sbjct: 65  RERVAKRIRG-------------------------------------DGADGLTICTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                +Q     A +   F+I D + +   I++         + D    + +A
Sbjct: 88  LGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKDLMHGAKPDAIEDAKNLISRA 140


>gi|332184470|gb|AEE26724.1| Exodeoxyribonuclease V beta chain [Francisella cf. novicida 3523]
          Length = 1197

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 76/178 (42%), Gaps = 9/178 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLL+     P+ +L +T TK A  E+  RV   I       
Sbjct: 16  IIEASAGTGKTFNITELYIRLLVEKKLLPNQILVMTFTKDATQEIIGRVEAKIRDVLEDI 75

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            E    +++    +   +      +HL  ++LE      + TIH FC+ ++ +    + +
Sbjct: 76  SEGKEVKVSIKGQETLIQKGDENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGM 134

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
                ++ E  +  ++++  +      +  +        +E L+  +    E  ++D+
Sbjct: 135 --EMDVSMEVDTSDILQKVVEDFFRKHINKSETN-----FEYLQEYSLHTPEKFLADL 185


>gi|218767904|ref|YP_002342416.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           Z2491]
 gi|121051912|emb|CAM08218.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           Z2491]
 gi|319410151|emb|CBY90487.1| exodeoxyribonuclease V beta chain [Neisseria meningitidis WUE 2594]
          Length = 1204

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 75/198 (37%), Gaps = 32/198 (16%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRGRLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEIT--------------KIQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I               ++  +   K   ++    L   +     
Sbjct: 80  ESKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--EEAKKS------TLASIML 182
             + TIH FC+ I++ +           + +E+  + LI  ++  +        LA++ L
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVEMTEEDGDRLLIPAQDFWRERVSNDPVLAALAL 199

Query: 183 DNNEELKKAFYEILEISN 200
                 +    +I    +
Sbjct: 200 KRKAVPQTVLAQISRYLS 217


>gi|325133701|gb|EGC56357.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           M13399]
          Length = 1204

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|294625790|ref|ZP_06704408.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599905|gb|EFF44024.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 658

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 38/173 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              +            V A AGSGKT ++V+++  L+    +P   +  +T T  +A EM
Sbjct: 5   NPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + I                                       +   GL + T HA
Sbjct: 65  RERVAKRIRG-------------------------------------DGADGLTICTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                +Q     A +   F+I D + +   I++         + D    + +A
Sbjct: 88  LGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKDLMHGAKPDAIEDAKNLISRA 140


>gi|170719393|ref|YP_001747081.1| ATP-dependent DNA helicase Rep [Pseudomonas putida W619]
 gi|169757396|gb|ACA70712.1| ATP-dependent DNA helicase Rep [Pseudomonas putida W619]
          Length = 669

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +Q           V A AGSGKT ++ +++  L+         ++ +T T  AA EM
Sbjct: 5   NPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV  ++                                           GL V T H 
Sbjct: 65  KERVATLLRPGEGR-------------------------------------GLTVCTFHN 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
               I+++   +      F+I DE   K L+ +  +
Sbjct: 88  LGLNIIRKEHDKLGYKPGFSIFDESDIKALLSDIMQ 123


>gi|294664984|ref|ZP_06730294.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325925624|ref|ZP_08187008.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118]
 gi|292605232|gb|EFF48573.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325543973|gb|EGD15372.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118]
          Length = 658

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 38/173 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              +            V A AGSGKT ++V+++  L+    +P   +  +T T  +A EM
Sbjct: 5   NPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + I                                       +   GL + T HA
Sbjct: 65  RERVAKRIRG-------------------------------------DGADGLTICTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                +Q     A +   F+I D + +   I++         + D    + +A
Sbjct: 88  LGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKDLMHGAKPDAIEDAKNLISRA 140


>gi|292493270|ref|YP_003528709.1| ATP-dependent DNA helicase Rep [Nitrosococcus halophilus Nc4]
 gi|291581865|gb|ADE16322.1| ATP-dependent DNA helicase Rep [Nitrosococcus halophilus Nc4]
          Length = 668

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 38/158 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
           + +    ++L          V A AGSGKT ++  ++  L+     P+  +  +T T  A
Sbjct: 1   MATLNPQQRLAVRHIDGPLLVLAGAGSGKTRVITHKIAYLIEQCHLPARSIAAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +++                                           GL V 
Sbjct: 61  AREMKTRIGQLLPKGRGR-------------------------------------GLVVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           T H     I+++      + + F++ D + S  LI + 
Sbjct: 84  TFHTLGLNILRREREALGLKAGFSLLDAQDSHALIRDL 121


>gi|189467388|ref|ZP_03016173.1| hypothetical protein BACINT_03776 [Bacteroides intestinalis DSM
           17393]
 gi|189435652|gb|EDV04637.1| hypothetical protein BACINT_03776 [Bacteroides intestinalis DSM
           17393]
          Length = 615

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 50/222 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            I+ I  T  +  + S    +  V A+AGSGKT +L +R+  L+ +      +L +T T 
Sbjct: 1   MINKIQLTSKQAAIVSFQQGALLVLASAGSGKTRVLTERIKYLVDSTK--RKILAITFTN 58

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+ E+  R                                       L  I      L 
Sbjct: 59  KASEEIKER---------------------------------------LSDIDNIEERLY 79

Query: 133 VQTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEE 187
           + T H+FC  ++++         +   F+  D+    ++IE+A     TL     + + +
Sbjct: 80  IGTFHSFCCYVLEKHGNMIGYQELPQVFSETDDR--LRIIEDAIVETPTLNQYFSNLDSK 137

Query: 188 LKKAF-YEILEISNDEDIETLISDIISNRTALK-LIFFFFSY 227
            +  F    L+I +    E ++ D +  R   K  I  ++SY
Sbjct: 138 QRNKFKTNALDIISKIKREVILDDDLEKRIKDKNAIMLYYSY 179


>gi|262369123|ref|ZP_06062452.1| ATP-dependent DNA helicase [Acinetobacter johnsonii SH046]
 gi|262316801|gb|EEY97839.1| ATP-dependent DNA helicase [Acinetobacter johnsonii SH046]
          Length = 679

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 48/194 (24%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           + L SQ   +QL A         V A AGSGKT ++ +++  L+         +  +T T
Sbjct: 1   MSLASQLNDKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVKHCGIPAYRITAMTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV ++++                                      E   GL
Sbjct: 61  NKAAREMKERVTKLLSR-------------------------------------EEAKGL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITS---HFAIADEEQSKKLIEEAK-KSTLASIMLDNNEE 187
            V T H F   +++   LE   T    +F+I D +  K+++ +   +  L+    ++ E 
Sbjct: 84  SVSTFHTFGLNMLR---LELKHTPLKNNFSILDADDCKRILMDLMHRDNLS--GAESKEL 138

Query: 188 LKKAFYEILEISND 201
           + KA   I +  ND
Sbjct: 139 IAKAMKMISDWKND 152


>gi|88801112|ref|ZP_01116658.1| ATP-dependent DNA helicase Rep [Reinekea sp. MED297]
 gi|88776141|gb|EAR07370.1| ATP-dependent DNA helicase Rep [Reinekea sp. MED297]
          Length = 701

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 39/167 (23%)

Query: 11  SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           S ++ + ++    Q  + +  +    V A AGSGKT ++ Q++  L+         +  +
Sbjct: 23  SVSLFMANKLNPRQKESVEYISGPLLVLAGAGSGKTSVITQKIAYLIQECGYRAHNIAAV 82

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV +++   +                                      
Sbjct: 83  TFTNKAAREMKARVSKLVKGKAS------------------------------------- 105

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            GL V T H     I+++      + S+F + D+  SK LI++    
Sbjct: 106 HGLIVSTFHNLGLNILRKESDAIGLKSNFTLFDDHDSKALIKDIILR 152


>gi|254427199|ref|ZP_05040906.1| UvrD/REP helicase subfamily [Alcanivorax sp. DG881]
 gi|196193368|gb|EDX88327.1| UvrD/REP helicase subfamily [Alcanivorax sp. DG881]
          Length = 673

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 38/161 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
           +      +Q   +       V A AGSGKT ++ +++  L+     P+  +  +T T  A
Sbjct: 1   MSKLNPRQQEAVNYADGPLLVLAGAGSGKTSVITRKIAWLIQERGIPARHIAAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  RV ++++                         D+++             GL V 
Sbjct: 61  SREMKERVQQLVSR------------------------DLTR-------------GLIVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H     I++       + + F+I D   SK++++E  + 
Sbjct: 84  TFHNLGLRILKSELKACGLRNGFSILDGADSKEILKEILRQ 124


>gi|163784551|ref|ZP_02179406.1| First subunit of major exonuclease [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880179|gb|EDP73828.1| First subunit of major exonuclease [Hydrogenivirga sp. 128-5-R1-1]
          Length = 423

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 22/188 (11%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           +    A+AG+GKT+ LV +VL  +   +     +L LT T+ AAAE+  ++ E I     
Sbjct: 3   NINYIASAGTGKTYSLVSQVLDKIRKEDVSLRQILILTFTEKAAAELKEKISERI----- 57

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                      K   K PN S   K +  L   L       + T H+     ++++P  +
Sbjct: 58  -----------KEALKDPNVSKKEKIK--LHRQLLFIDSGYIGTFHSVFFRFLKKYPHVS 104

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
            I   F++    Q   ++    +  +     +N ++ +K      +  N++ ++ +   +
Sbjct: 105 GIDKSFSVL-SSQLDYILGLFFEKWIEKDFEENPKDWEKIITFFTD--NEKKLKKIFLQL 161

Query: 212 ISNRTALK 219
              R  LK
Sbjct: 162 YKERLKLK 169


>gi|110835399|ref|YP_694258.1| ATP-dependent DNA helicase Rep [Alcanivorax borkumensis SK2]
 gi|110648510|emb|CAL17986.1| ATP-dependent DNA helicase Rep [Alcanivorax borkumensis SK2]
          Length = 673

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 38/161 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
           +      +Q           V A AGSGKT ++ +++  L+     P+  +  +T T  A
Sbjct: 1   MSKLNPRQQEAVDYADGPLLVLAGAGSGKTSVITRKIAWLIQERGIPARHIAAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  RV ++++                         D+++             GL V 
Sbjct: 61  SREMKERVQQLVSR------------------------DLTR-------------GLIVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H     I++       + + F+I D   SK++++E  + 
Sbjct: 84  TFHNLGLRILKSELKACGLRNGFSILDGADSKEILKEILRQ 124


>gi|261378815|ref|ZP_05983388.1| exodeoxyribonuclease V, beta subunit [Neisseria cinerea ATCC 14685]
 gi|269144795|gb|EEZ71213.1| exodeoxyribonuclease V, beta subunit [Neisseria cinerea ATCC 14685]
          Length = 1204

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 24/168 (14%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           LA     +  + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+  
Sbjct: 11  LAVPIAGTNLIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRA 70

Query: 85  II---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLL 121
            +            + L D+ LS  I                +  +   K   ++    L
Sbjct: 71  RLDDVLQVLESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLEQALQKESRTRLIVRL 130

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
              +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 131 KAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|325206373|gb|ADZ01826.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           M04-240196]
          Length = 1204

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D  LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDGALSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + LI
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178


>gi|325923760|ref|ZP_08185377.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865]
 gi|325545758|gb|EGD16995.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865]
          Length = 658

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 48/205 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +            V A AGSGKT ++V+++  L+    +P   +  +T T  +
Sbjct: 1   MHGLNPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I                                       +   GL + 
Sbjct: 61  AKEMRERVAKRIRG-------------------------------------DGAEGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA     +Q     A +   F+I D + +   I++        +M     +  +    
Sbjct: 84  TFHALGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKD--------LMHGAKPDAIEDAKN 135

Query: 195 ILEISNDEDI--ETLISDIISNRTA 217
           ++  + +  +  E  ++   SNR  
Sbjct: 136 LISRAKNAGMSPEQAMAAARSNREK 160


>gi|39979183|emb|CAE85555.1| related to ATP-dependent DNA helicase [Neurospora crassa]
 gi|54633283|dbj|BAD66822.1| ATP-dependent DNA helicase [Neurospora crassa]
          Length = 1105

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++   ++    +    +  + A  GSGKTH L  RV+ L+      P  ++  T T
Sbjct: 11  ILDSLN--NAQARAVTSDAATVAILAGPGSGKTHTLTSRVVWLVDHVGYQPQDVVVATFT 68

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ + +                     + NK  +                 
Sbjct: 69  VKAAREMKERIGKALG------------------NGRENKIIL----------------- 93

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H+     +  +     ++  F+IAD+  S+ +I    K  
Sbjct: 94  --GTFHSIARRYLAAYGRHIGLSEKFSIADDNDSRSIITRICKRL 136


>gi|284044826|ref|YP_003395166.1| exodeoxyribonuclease V subunit beta [Conexibacter woesei DSM 14684]
 gi|283949047|gb|ADB51791.1| exodeoxyribonuclease V, beta subunit [Conexibacter woesei DSM
           14684]
          Length = 1132

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           P     + A+AG+GKT+ +     R +        LL +T T+ A  E+  RV   + + 
Sbjct: 16  PEGVTVLEASAGTGKTYAIAALATRYVAEGIPLDQLLIVTFTRMATGELRDRVRHRLAST 75

Query: 90  SHLSDEILSAEITKIQGKKP------NKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
               D I +     +  +          +++++ R  ++  L       + TIH+FC+  
Sbjct: 76  REALDAIAAGAAPGVYDEVVRLLASGTSAEVARRRDRIVRALAEFDAATITTIHSFCQEA 135

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           + +    A++        +E  + L EE          L      ++A
Sbjct: 136 LGELGFAADLDRDHRF--QEDVRDLAEEVVDDLYVRGFLTRPPHFRRA 181


>gi|256374783|ref|YP_003098443.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919086|gb|ACU34597.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 1001

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 53/222 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L      ++  A        + A  G+GKT  L  R+  L++     P   L +T T+ A
Sbjct: 469 LAGLDPDQRAAAGVEGGPLLIIAGPGTGKTRTLTHRLAHLVVERGVPPEQCLAITFTRRA 528

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM+ R+  +  A +                                        + + 
Sbjct: 529 AEEMTERMAALAPAHAPA--------------------------------------MTIT 550

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI------EEAKKSTLASIMLDNNEEL 188
           T HA    ++++      ++  F IAD +Q   +       E+A K  LA+         
Sbjct: 551 TFHALGVLVLREQHDRVGLSRSFGIADPDQQLAVALSVAADEKAAKELLATAH------- 603

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
             A+ + L   +  D + LI+  ++       +   +   WR
Sbjct: 604 -PAYKDALRAQDLVDFDDLITLPLALLEDDADLAASYRDRWR 644


>gi|51245196|ref|YP_065080.1| exodeoxyribonuclease V, beta chain [Desulfotalea psychrophila
           LSv54]
 gi|50876233|emb|CAG36073.1| related to exodeoxyribonuclease V, beta chain [Desulfotalea
           psychrophila LSv54]
          Length = 1191

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           ++ A+AG+GKT+ +   VLR +   +     +L +T T+AAA E+  RV   +     L 
Sbjct: 26  FIEASAGTGKTYAIGMLVLRAICEQDIGIDRILIVTFTRAAAEELRSRVRARLVEARDLL 85

Query: 94  DEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                    +   +    ++    +    L   +       + TIH+FC+ ++ +  LE+
Sbjct: 86  QGRHEDASLRAWQEHAVKDEGVARRFISRLQLAIVNIDRAGIFTIHSFCQRMLSEQALES 145

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLA 178
                F +        L   A +    
Sbjct: 146 G--QLFRMDLLTSLDDLRLRAAEDFWR 170


>gi|269127954|ref|YP_003301324.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312912|gb|ACY99286.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 1128

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  ++L   T  +  + S P     V A AGSGK+  +  RV+ L+      P  +L 
Sbjct: 6   ELARLLELPEPTPEQARVISAPLAPMAVIAGAGSGKSETMAARVVWLVANGLVRPERVLG 65

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA E++ R+   +        +    E+ ++ G+                    
Sbjct: 66  LTFTRKAAGELATRIRRRLDQLRDRLPQ---DELDRLGGEAALD---------------- 106

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            G   V T H++   +     L A +     +     + +L       
Sbjct: 107 -GEPAVSTYHSYAARLFGDHALRAALEPTMRLISPAMAWQLAARVVDD 153


>gi|146280892|ref|YP_001171045.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri A1501]
 gi|145569097|gb|ABP78203.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri A1501]
          Length = 658

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 40/163 (24%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ +++  L+         ++ +T T  AA EM  RV  ++   
Sbjct: 5   GGPLLVLAGAGSGKTSVITRKIAHLVQNCGIQARHIVAMTFTNKAAREMKERVGTLLKG- 63

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                    S+AR           GL V T H     I+++   
Sbjct: 64  -------------------------SEAR-----------GLTVSTFHNLGMNIIRKEYA 87

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
                  F+I D+   K L+ +  +        D  +E+K   
Sbjct: 88  RLGYKPGFSIFDDGDIKALLTDIMQK--EYAGDDGADEIKNLI 128


>gi|254388945|ref|ZP_05004176.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702663|gb|EDY48475.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1162

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 41/199 (20%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT ++  RV+ L+      P  +L LT T  AA E++ RV   +        + 
Sbjct: 2   AGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRTALVRAGVTDPDA 61

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
           +  +                           PG  ++ T HAF   ++    L   +   
Sbjct: 62  IDPD-------------------------RPPGEPRISTYHAFAGQLLTDHGLRIGLEPT 96

Query: 157 FAIADEEQSKKLIEEAKK-------------STLASIMLDNNEELKKAFY--EILEISND 201
             +  +    +L  +  +             STL   +L  + EL +     E+L   ++
Sbjct: 97  ARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDLLALDAELSEHLVRPELLAAHDE 156

Query: 202 EDIETLISDIISNRTALKL 220
           E +ETL S  ++N    +L
Sbjct: 157 ELLETLASASLTNADLRRL 175


>gi|187931411|ref|YP_001891395.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712320|gb|ACD30617.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 1217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 19/186 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ ++ +    + I
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGI 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII- 212
                ++ +  +  ++++  +      +  N  E    + +I ++   E     + +II 
Sbjct: 123 --EMDVSMDVDTSDILQKVVEDFFRKHI--NKSETNFGYLQIYKLHTPEKFLDDLENIIR 178

Query: 213 SNRTAL 218
           SN   L
Sbjct: 179 SNYEIL 184


>gi|134301565|ref|YP_001121533.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049342|gb|ABO46413.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 1217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 19/186 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ ++ +    + I
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGI 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII- 212
                ++ E  +  ++++  +      +  N  E    + +I ++   E     + +II 
Sbjct: 123 --EMDVSMEVDTSDILQKVVEDFFRKHI--NKSETNFGYLQIYKLHTPEKFLDDLENIIR 178

Query: 213 SNRTAL 218
           SN   L
Sbjct: 179 SNYEIL 184


>gi|241668460|ref|ZP_04756038.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876993|ref|ZP_05249703.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843014|gb|EET21428.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 671

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
           +    V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  STPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+    I+++  L
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLTILKKHFL 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           +     +F + D   S  LI +    
Sbjct: 100 DLGYKKNFTLFDSHDSLALIYDIAYE 125


>gi|126434059|ref|YP_001069750.1| UvrD/REP helicase [Mycobacterium sp. JLS]
 gi|126233859|gb|ABN97259.1| UvrD/REP helicase [Mycobacterium sp. JLS]
          Length = 1091

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 59/166 (35%), Gaps = 23/166 (13%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L + T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 9   ELASALGLFAPTDEQAAVIAAPPGPVVVIAGAGAGKTETMAARVVWLVANGYATPGQVLG 68

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   S      L   I    G   +                 
Sbjct: 69  LTFTRKAAGQLLRRVRTRLARLSGAG---LVPGIGPGLGATDDPP--------------- 110

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                V T HAF   +++   L   I     +  E +  +L     
Sbjct: 111 ----TVSTYHAFAGMLLRDHGLLLPIEPETRLLGETELWQLAHRVV 152


>gi|255321197|ref|ZP_05362363.1| superfamily I DNA and RNA helicase [Acinetobacter radioresistens
           SK82]
 gi|262380117|ref|ZP_06073272.1| ATP-dependent DNA helicase PcrA [Acinetobacter radioresistens
           SH164]
 gi|255301751|gb|EET81002.1| superfamily I DNA and RNA helicase [Acinetobacter radioresistens
           SK82]
 gi|262298311|gb|EEY86225.1| ATP-dependent DNA helicase PcrA [Acinetobacter radioresistens
           SH164]
          Length = 659

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 41/165 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
             S   D ++  + +   A+   ++  V A AG GKT  +V R   L+        +  L
Sbjct: 2   SLSTLSDELNLKQKQ--AATTTAQNCLVLAGAGCGKTKTIVARAAYLIDQGIPADQIQIL 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AA+E+  RV + + A +                                      
Sbjct: 60  TFTRRAASEIVTRVEQHLGAKAR------------------------------------- 82

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            GL+  T H FC  ++++      +   F+I D +    +    +
Sbjct: 83  -GLRASTFHTFCMYLLRRNSQAFGL-GQFSIIDRDDQILMFRLLR 125


>gi|313126059|ref|YP_004036329.1| ATP-dependent exonuclase v subunit beta, helicase and exonuclease
           domain-containing [Halogeometricum borinquense DSM
           11551]
 gi|312292424|gb|ADQ66884.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Halogeometricum borinquense DSM
           11551]
          Length = 1152

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 39/161 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +S    ++ +         V A AG+GKT  +V++V  L+   +  P  +L LT T  AA
Sbjct: 19  VSPEPQQETIIDSDAYPMRVLAGAGTGKTFTMVRKVEHLIDEEDVSPDRILTLTFTNNAA 78

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             M  ++   +    +  D                                        T
Sbjct: 79  GSMREKLNAKLGTAGYDIDA--------------------------------------YT 100

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H+ C  I+  +  EA I   F +A + +   ++ +     
Sbjct: 101 YHSICNEILTDYAYEAGIDPDFEVATDAEKYAIVLDVLDDI 141


>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
          Length = 855

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ + +   ++  + ++AG+GKT  L  R+  ++  N      +LCLT T  A  EM
Sbjct: 7   NDKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +++E +                                            + V+T H+
Sbjct: 67  KEKIIETVGKEGL--------------------------------------KVTVKTFHS 88

Query: 139 FCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172
           FC  ++++   +  +I+S F I DEE +K++I E 
Sbjct: 89  FCFDVIKKEAKKNTDISSDFTIYDEEDTKEIISEL 123


>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
 gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
          Length = 855

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ + +   ++  + ++AG+GKT  L  R+  ++  N      +LCLT T  A  EM
Sbjct: 7   NDKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +++E +                                            + V+T H+
Sbjct: 67  KEKIIETVGKEGL--------------------------------------KVTVKTFHS 88

Query: 139 FCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172
           FC  ++++   +  +I+S F I DEE +K++I E 
Sbjct: 89  FCFDVIKKEAKKNTDISSDFTIYDEEDTKEIISEL 123


>gi|56708443|ref|YP_170339.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670914|ref|YP_667471.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254371067|ref|ZP_04987069.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|56604935|emb|CAG46027.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321247|emb|CAL09410.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569307|gb|EDN34961.1| hypothetical protein FTBG_00823 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|282159635|gb|ADA79026.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 1217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 19/186 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ ++ +    + I
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGI 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII- 212
                ++ E  +  ++++  +      +  N  E    + +I ++   E     + +II 
Sbjct: 123 --EMDVSMEVDTSDILQKVVEDFFRKHI--NKSETNFGYLQIYKLHTPEKFLDDLENIIR 178

Query: 213 SNRTAL 218
           SN   L
Sbjct: 179 SNYEIL 184


>gi|158312780|ref|YP_001505288.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108185|gb|ABW10382.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1088

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 23/168 (13%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           E+   +  +  T  +   A+ P   A V A AGSGKT ++  RV+ L+      P  +L 
Sbjct: 9   EYLRELLGVPYTDEQLAAATAPLEPAVVIAGAGSGKTSVMAARVVWLVATRQVEPGRVLG 68

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  AAAE++ RV   +           +A        +P                  
Sbjct: 69  LTFTNKAAAELAGRVRTALRRARENVPGQPAAADADADADEP------------------ 110

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                + T HA+   ++ +  L   +     +       +L     ++
Sbjct: 111 ----TIGTYHAYAGRLVGEHALRLGLEPDTRMLVAAARYQLAARVARA 154


>gi|319789815|ref|YP_004151448.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
 gi|317114317|gb|ADU96807.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
          Length = 958

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 23/191 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + ANAG+GKT  +V R +  +        ++  T T+AAAA++  RV            
Sbjct: 4   LIGANAGAGKTTEIVSRYVEFIRQKFSVDEVVLTTFTEAAAAQLRDRV-----------K 52

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             L  EI+     +  K  +      L T         + TIH+FC  ++++F +   + 
Sbjct: 53  LALIEEISSCVNDEGTKEHLETQLLYLPTAP-------IGTIHSFCFELLRRFGVSKGLI 105

Query: 155 S-HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI---ETLISD 210
           S    +A   +  +L E A +S +  +   ++E  +K     ++ +  E +   E  + +
Sbjct: 106 SLEARLASPIEVAELAERAVESAVEEVYSADSEGFRKLL-TAIDPNGLEGLLTVERFLKE 164

Query: 211 IISNRTALKLI 221
           +I +RT    +
Sbjct: 165 VIHHRTRFPFV 175


>gi|312143393|ref|YP_003994839.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
 gi|311904044|gb|ADQ14485.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
          Length = 944

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 84/264 (31%), Gaps = 74/264 (28%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
             +D  +  K +Q           + A  GSGKT  L+ R + LL         +L  T 
Sbjct: 6   NLLDF-TPNKEQQKAIETTDGPLLIIAGPGSGKTQSLILRTVNLLANKKVKAKNILVCTF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+ AA ++  R+  +I    H  D                                    
Sbjct: 65  TEKAALQLRTRIANMIDNLDHRIDT---------------------------------SD 91

Query: 131 LKVQTIHAFCEAIMQQF----PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN- 185
           + + TIH FC  I+++F    P    +   F + DE   K  I +     L     ++  
Sbjct: 92  IMINTIHGFCNEILREFTDVHPH---LDRGFEVLDEVMQKFFINDNFNKILEDSTDESRY 148

Query: 186 --------------EELKKAFYEILE---------ISNDEDIETL------ISDIIS--N 214
                         E L K F ++ +          S D+  E L        D++S  N
Sbjct: 149 KKYLNKWKYKWRTIEGLIKYFNKLTQELISPEDLVFSGDKFFEELGYAYQNYRDLLSEKN 208

Query: 215 RTALKLIFFFFSYLWRRKIIEKSL 238
                 + F+ + L   K  E+ L
Sbjct: 209 YVDFAFLQFYLNDLLENKETEEEL 232


>gi|108798375|ref|YP_638572.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119867472|ref|YP_937424.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|108768794|gb|ABG07516.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119693561|gb|ABL90634.1| UvrD/REP helicase [Mycobacterium sp. KMS]
          Length = 1091

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L + T  +  + + P     V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 9   ELASALGLFAPTDEQAAVIAAPPGPVVVIAGAGAGKTETMAARVVWLVANGYATPGQVLG 68

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   S      L   I    G   +                 
Sbjct: 69  LTFTRKAAGQLLRRVRTRLARLSGAG---LVPGIGPGLGAADDPP--------------- 110

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
                V T HAF   +++   L   I     +  E +
Sbjct: 111 ----TVSTYHAFAGTLLRDHGLLLPIEPETRLLGETE 143


>gi|262373227|ref|ZP_06066506.1| ATP-dependent DNA helicase Rep [Acinetobacter junii SH205]
 gi|262313252|gb|EEY94337.1| ATP-dependent DNA helicase Rep [Acinetobacter junii SH205]
          Length = 679

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 42/191 (21%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +   SQ   +QL A         V A AGSGKT ++ +++  L+         +  +T T
Sbjct: 1   MSSASQLNDKQLEAMKYVQGPLLVLAGAGSGKTSVITRKIAFLVQQCGIPAHRITAMTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV ++++                                      E   GL
Sbjct: 61  NKAAREMKERVGKLLSR-------------------------------------EEAKGL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK-LIEEAKKSTLASIMLDNNEELKK 190
            V T H F   +++       + ++F+I D +  K+ L++  ++  L+    ++ E + K
Sbjct: 84  SVSTFHTFGLNLLRIELKHLPLKANFSILDADDCKRILMDLMQRDNLS--GAESKELIAK 141

Query: 191 AFYEILEISND 201
           A  +I +  ND
Sbjct: 142 AMKKISDWKND 152


>gi|307691765|ref|ZP_07634002.1| ATP-dependent DNA helicase PcrA [Ruminococcaceae bacterium D16]
          Length = 821

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 68/225 (30%), Gaps = 84/225 (37%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL----------------------- 56
              +Q           + A AGSGKT +L+ R+  L+                       
Sbjct: 26  NPEQQKAVLTTQGPLLLLAGAGSGKTTVLINRIANLMRYGRGSDSAEVPEWVSPEDLDFL 85

Query: 57  -------------------LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
                              L  A P T+L +T T  AA E+  R+  ++           
Sbjct: 86  ENYANTGEGDQDRMVSLCALDPAAPWTILAITFTNKAAGELKDRLSAMLG---------- 135

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                      P   D+                    T H+ C  I+++        S F
Sbjct: 136 -----------PEAEDV-----------------WASTFHSACVRILRRDIERLGFASSF 167

Query: 158 AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
            I D + S ++I++     L  + LD+ +   ++    +  + D+
Sbjct: 168 TIYDTDDSLRVIKDC----LKELELDDKQFPPRSVLGYISRAKDQ 208


>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 855

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ + +   ++  + ++AG+GKT  L  R+  ++  N      +LCLT T  A  EM
Sbjct: 7   NDKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +++E +                                            + V+T H+
Sbjct: 67  KEKIIETVGKEGL--------------------------------------KVTVKTFHS 88

Query: 139 FCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172
           FC  ++++   +  +I+S F I DEE +K++I E 
Sbjct: 89  FCFDVIKKEAKKNTDISSDFTIYDEEDTKEIISEL 123


>gi|153006848|ref|YP_001381173.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152030421|gb|ABS28189.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 1083

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 41/207 (19%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            +SA+AG+GKTH L   + + LL   A P  ++ +T+T  AA E+  R+ E +       
Sbjct: 5   VISASAGTGKTHRLTGDLTKALLDGSARPEGVVAITYTVKAAGELESRIRESLLKAGRP- 63

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                     L   I +      + TIH+ C+ ++++F LEA +
Sbjct: 64  -------------------------ELAARIRDGY----IGTIHSVCQRLLREFALEAGL 94

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII- 212
           +       E + K+L + A  S LA          +    E+      ED + ++ +I+ 
Sbjct: 95  SPWLEPIPEPERKRLFDVALASVLAG--------REGPLNELARRLEIEDWKEILLEIVD 146

Query: 213 -SNRTALKLIFFFFSYLWRRKIIEKSL 238
                 +       S    R  +EK L
Sbjct: 147 AGRANGMDRAALERSAAASRAGLEKLL 173


>gi|261416924|ref|YP_003250607.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373380|gb|ACX76125.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326770|gb|ADL25971.1| ATP-dependent DNA helicase PcrA [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 843

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 32/182 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
              +   A        + A AGSGKT  +  ++  L+       + +L +T T  AA EM
Sbjct: 20  NPEQAAAAKKINGPMLILAGAGSGKTRCITYKIAHLVSYHKIDSNRVLAVTFTNKAAREM 79

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +++      +       +     K     +         ++++  GG        
Sbjct: 80  KDRIQKLLNCRKPFTWMGTFHSVCLKLLKLCLAKE---------SVIKALGGKW------ 124

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
                           ++F+I D++  K++++E  K  L      N  ELKK    I   
Sbjct: 125 --------------FDANFSIYDDDDQKRILKEILKDDLGDDYDVN--ELKKVHSAISRF 168

Query: 199 SN 200
            N
Sbjct: 169 KN 170


>gi|148653621|ref|YP_001280714.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
 gi|148572705|gb|ABQ94764.1| ATP-dependent DNA helicase Rep [Psychrobacter sp. PRwf-1]
          Length = 679

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 41/188 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +      +Q   +  +    V A AGSGKT ++ +++  L+   N     +  +T T  A
Sbjct: 1   MSKLNPKQQEAMTYVSGPLLVLAGAGSGKTSVITRKIAYLIEQCNIPAERITAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV  ++                                       E   GL V 
Sbjct: 61  AREMKARVTSLMPK-------------------------------------EKTRGLTVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193
           T H F    ++   L   +  +F+I D + SK+L+ E   +  L+    ++ E + KA  
Sbjct: 84  TFHQFGLQFLRYELLHTPLKGNFSIMDADDSKRLLMELMMRDNLS--GAESRELVGKAIK 141

Query: 194 EILEISND 201
            I +  ND
Sbjct: 142 FISDWKND 149


>gi|34849423|gb|AAP58922.1| ATP-dependent DNA helicase [Spiroplasma kunkelii CR2-3x]
          Length = 729

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           +E I+ ++  + E +L    T    + A AGSGKT ++  ++  L+  AN  P  +  +T
Sbjct: 3   NEFIESLNPNQREAVLRI--TGPVRIIAGAGSGKTRVITNKIAYLIKYANLQPWRICAVT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  A  EM  R++E+I                                        +  
Sbjct: 61  FTNKATNEMRTRIVEMIG--------------------------------------NSGQ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T HA C  I+++  +  N   +F I D      +I    K  
Sbjct: 83  RCMIATYHALCVRILREDIIHLNYDRYFNIIDMADQDSIIRNIYKRL 129


>gi|85057395|ref|YP_456311.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789500|gb|ABC65232.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 761

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 73/191 (38%), Gaps = 40/191 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
            +++    +   +S +++A AG+GKT  L  ++  L+     PS  +L LT T  A  +M
Sbjct: 27  NQTQLAAVTSNAKSFYLAAGAGTGKTTTLTAKIAYLIEQKKLPSNQILALTFTNKAVKQM 86

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++ ++I                                       E   G+ + T H+
Sbjct: 87  KEKLDQMIGK-------------------------------------EKTKGITICTFHS 109

Query: 139 FCEAIMQQFPLEANITS--HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
               I+++F      +   +F I D+   KK++++  K            ELKK+  +I 
Sbjct: 110 LGTQILRKFIPFLPFSYRNNFKILDDNDCKKILKDILKEMNIDPKRVKISELKKSISDIK 169

Query: 197 EISNDEDIETL 207
                ++ +TL
Sbjct: 170 RKHEPQNEDTL 180


>gi|240949012|ref|ZP_04753366.1| exodeoxyribonuclease V beta chain [Actinobacillus minor NM305]
 gi|240296599|gb|EER47217.1| exodeoxyribonuclease V beta chain [Actinobacillus minor NM305]
          Length = 1202

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHR 81
             S+ + A+AG+GKTH +    LRLLL   H          + +L +T TKAA  E+  R
Sbjct: 12  NCSSLIEASAGTGKTHTIKNLYLRLLLGLGHDKSAFQPLTVAQILVVTFTKAATEELRER 71

Query: 82  VLEIITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           + E I A      E LS E TK     +       +  +A   L           V TIH
Sbjct: 72  IRENIQACYTFFQERLSGEETKSDDFFEQLFEQVENKEEALLRLRIAEREIDLASVFTIH 131

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           +FC+ ++ QF  ++ +   F I  + +  +L+ +  +        
Sbjct: 132 SFCQKMLFQFAFDSGV--RFDIELKAEQSELMLKLAQEVWREQFY 174


>gi|166153980|ref|YP_001654098.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 434/Bu]
 gi|166154855|ref|YP_001653110.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335177|ref|ZP_07223421.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis L2tet1]
 gi|165929968|emb|CAP03451.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 434/Bu]
 gi|165930843|emb|CAP06405.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 1026

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 9/194 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +   ++ A+AG+GKT  + Q +LR LL         +L +T T AA  E+  R+   +  
Sbjct: 14  SGKFFLEASAGTGKTFTIEQVILRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQ 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ- 146
              L  + LS   T +     +     K  ++ +   L T   + + TIH FC   ++Q 
Sbjct: 74  ALSLFSQALSHPGTPLPPYISSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQH 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIE 205
           FP    I    +I  E Q+   I++     L   + D      + AF      +  +   
Sbjct: 134 FPWIQPIQPS-SIFSEPQT---IQQYILDYLRKNLWDTVLSPKQYAFLSYHHRATTQQTR 189

Query: 206 TLISDIISNRTALK 219
            LI  ++ + T+  
Sbjct: 190 HLIERLLQDYTSTP 203


>gi|262280027|ref|ZP_06057812.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260378|gb|EEY79111.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 679

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 41/184 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++ +++  L+     P   +  +T T  AA EM
Sbjct: 8   NNKQEEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQQCRIPAHRITAMTFTNKAAREM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV ++++                                      E   GL V T H 
Sbjct: 68  KERVSKLLSR-------------------------------------EESKGLSVSTFHT 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNEELKKAFYEILE 197
           F   +++       + ++F+I D +  K+++ +   +  L+    ++ E + KA  +I +
Sbjct: 91  FGLNLLRLELKNLPLKANFSILDADDCKRILMDLMHRDNLS--GAESKELIAKAMKKISD 148

Query: 198 ISND 201
             ND
Sbjct: 149 WKND 152


>gi|255322232|ref|ZP_05363378.1| acyl carrier protein [Campylobacter showae RM3277]
 gi|255300605|gb|EET79876.1| acyl carrier protein [Campylobacter showae RM3277]
          Length = 677

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 80/216 (37%), Gaps = 30/216 (13%)

Query: 17  ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQ   A+ P     V A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3   LSKLNQEQYAAATAPAGHNLVIASAGTGKTSTIVARIAHLLNLGVKPEKILLLTFTNKAA 62

Query: 76  AEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           AEM  R+      +I +  +  +   +S  + K   K       S+ + LL +++E    
Sbjct: 63  AEMIERLNRHFDKKITSRITAGTFHSVSYSLLKFLEKPVTLKQPSELKTLLKSLVER--- 119

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE--- 187
                         ++F   +++  +      +        A K T    + + ++E   
Sbjct: 120 --------------RKFNHLSDVKPYGGAYLYDAYSLFQNLALKQTFGEWLKERSDEQGV 165

Query: 188 ----LKKAFYEILEISNDEDIETLISDIISNRTALK 219
                +    E  E  +          +I  R  L+
Sbjct: 166 YAEIYEDVLREFEEEKSKFGYADFNDLLIKMRNELR 201


>gi|268609040|ref|ZP_06142767.1| ATP-dependent DNA helicase PcrA [Ruminococcus flavefaciens FD-1]
          Length = 786

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 69/235 (29%), Gaps = 83/235 (35%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-------------------------- 56
           +Q           V A AGSGKT ++V R+  ++                          
Sbjct: 25  QQEAVFTVNGPVLVLAGAGSGKTTVIVNRIANMIKFGNAFYDETRSGSEEDIAFLKDYAA 84

Query: 57  --------------LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
                              P  +L +T T  AA E+  R+  ++                
Sbjct: 85  GKTDDADTLRDIVAADPIKPWNILAITFTNKAAGELKERLAAMLGE-------------- 130

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                  E    +   T H+ C  I++         S F I D 
Sbjct: 131 -----------------------EEAVKINASTFHSACVRILRSEITALGYGSDFTIYDS 167

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI--ETLISDIISNR 215
           + S+++I    KS +A + +   +   KA    +  + D+ I  E L +D   + 
Sbjct: 168 DDSQRMI----KSVMAELDISEKQLAPKAVLGEISRAKDQMITPEQLRADAGQDY 218


>gi|228469677|ref|ZP_04054645.1| putative ATP-dependent helicase [Porphyromonas uenonis 60-3]
 gi|228308696|gb|EEK17422.1| putative ATP-dependent helicase [Porphyromonas uenonis 60-3]
          Length = 1102

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 10/176 (5%)

Query: 38  ANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           A+AG+GKTH + +  LR +L    +    +  +T T  A  E+  R  + ++  +    E
Sbjct: 13  ASAGAGKTHTMTEAFLRHVLQYPESSYQEVQAVTFTNLATRELKERFFKELSTLAVAPQE 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                         +K   ++AR  L +IL    GL+V+TI +F + I+    +E     
Sbjct: 73  SPFYGTFNKHYS--DKQLSTRARTALQSILFDYDGLRVKTIDSFFQDIIHALAIELKQRP 130

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
              I         +       +  +  + + E ++A    L    D+ I  L + +
Sbjct: 131 TTRIELSTDQILGLA------VERLFDEPSPEAQEAIKRFLTDQADKSIYALKNSL 180


>gi|111225392|ref|YP_716186.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152924|emb|CAJ64672.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 1170

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 38/213 (17%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++ +   P     V A  G+GKT  LV+ V   + A A P ++L LT ++ AA E+ 
Sbjct: 46  DPAQRRVIEHPGGPLLVLAGPGTGKTATLVEAVAARIEAGADPRSILVLTFSRRAAGELR 105

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +      S     +                                   T HA+
Sbjct: 106 ERITARLGPGGSASRGGPGSGGGPGAW----------------------------TFHAW 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF-YEILEI 198
           C A+++     A     F +    +        + S L  ++  + E+ +  +  ++   
Sbjct: 138 CLALLRAHDRPAPH-GGFRLLSGPE--------RDSRLRELIEGSREDGRPVWPPQLARA 188

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
                    +  +++    + L     + L RR
Sbjct: 189 LGTRGFTEEVRALLARAREVGLEPVGLAQLARR 221


>gi|257465356|ref|ZP_05629727.1| exodeoxyribonuclease V beta chain [Actinobacillus minor 202]
 gi|257451016|gb|EEV25059.1| exodeoxyribonuclease V beta chain [Actinobacillus minor 202]
          Length = 1204

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 30/223 (13%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHR 81
             S+ + A+AG+GKTH +    LRLLL   H          + +L +T TKAA  E+  R
Sbjct: 14  NCSSLIEASAGTGKTHTIKNLYLRLLLGLGHDKSAFQPLTVAQILVVTFTKAATEELRER 73

Query: 82  VLEIITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           + E I A      E LS + T+     +       +  +A   L           V TIH
Sbjct: 74  IRENIQACYTFFQERLSGKETQSDDFFEQLFEQVENKEEALLRLRIAEREIDLASVFTIH 133

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC+ ++ QF  ++ +   F I  +    +L+    +                       
Sbjct: 134 SFCQKMLFQFAFDSGV--RFDIELKADQSELMLRLAQEVWREQFYP-------------- 177

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240
               ++ + +  ++ + + ALKLI  + +        ++ ++S
Sbjct: 178 -MGLKETQIIAQELKTPQEALKLIRSYLNDALPELGKQQQIFS 219


>gi|319788484|ref|YP_004147959.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis 11-1]
 gi|317466996|gb|ADV28728.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis 11-1]
          Length = 657

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 38/155 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++V+++  L+ +  +P   +  +T T  +A EM
Sbjct: 3   NPPQRAAVLHDQGPLLVLAGAGSGKTRVIVEKIAHLIASGRYPARRIAAITFTNKSAKEM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + I                                       +   GL + T HA
Sbjct: 63  RERVAKRIRG-------------------------------------DAADGLTICTFHA 85

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                +Q     A +   F+I D + +   +++  
Sbjct: 86  LGLKFLQIEHEAAGLKRGFSIFDADDAAAQVKDLM 120


>gi|21244998|ref|NP_644580.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110722|gb|AAM39116.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 658

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 38/173 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              +            V A AGSGKT ++V+++  L+    +P   +  +T T  +A EM
Sbjct: 5   NPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + I                                       +   GL + T HA
Sbjct: 65  RERVAKRIRG-------------------------------------DGAEGLTICTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                +Q     A +   F+I D + +   I++         + D    + +A
Sbjct: 88  LGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKDLMHGAKPDAIEDAKNLISRA 140


>gi|169796934|ref|YP_001714727.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|184157156|ref|YP_001845495.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|213156663|ref|YP_002318324.1| ATP-dependent DNA helicase [Acinetobacter baumannii AB0057]
 gi|215484396|ref|YP_002326627.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB307-0294]
 gi|239503180|ref|ZP_04662490.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB900]
 gi|260555776|ref|ZP_05827996.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ATCC 19606]
 gi|294839617|ref|ZP_06784300.1| ATP-dependent DNA helicase rep [Acinetobacter sp. 6013113]
 gi|294842991|ref|ZP_06787674.1| ATP-dependent DNA helicase rep [Acinetobacter sp. 6014059]
 gi|294859836|ref|ZP_06797605.1| ATP-dependent DNA helicase rep [Acinetobacter sp. 6013150]
 gi|301348256|ref|ZP_07228997.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB056]
 gi|301512392|ref|ZP_07237629.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB058]
 gi|301597490|ref|ZP_07242498.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB059]
 gi|169149861|emb|CAM87752.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|183208750|gb|ACC56148.1| Superfamily I DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|193076634|gb|ABO11317.2| ATP-dependent DNA helicase [Acinetobacter baumannii ATCC 17978]
 gi|213055823|gb|ACJ40725.1| ATP-dependent DNA helicase [Acinetobacter baumannii AB0057]
 gi|213987021|gb|ACJ57320.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB307-0294]
 gi|260410687|gb|EEX03985.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ATCC 19606]
 gi|322507053|gb|ADX02507.1| ATP-dependent DNA helicase [Acinetobacter baumannii 1656-2]
 gi|323516920|gb|ADX91301.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 679

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 41/184 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++ +++  L+     P   +  +T T  AA EM
Sbjct: 8   NNKQEEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAREM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV ++++                                      E   GL V T H 
Sbjct: 68  KERVTKLLSR-------------------------------------EEAKGLSVSTFHT 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNEELKKAFYEILE 197
           F   +++       + ++F+I D +  K+++ +   +  L+    ++ E + KA  +I +
Sbjct: 91  FGLNLLRLELKNLPLKANFSILDADDCKRILMDLMHRDNLS--GAESKELIAKAMKKISD 148

Query: 198 ISND 201
             ND
Sbjct: 149 WKND 152


>gi|260552489|ref|ZP_05825865.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260405296|gb|EEW98792.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 679

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 43/187 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           ++  + E +  +       V A AGSGKT ++ +++  L+     P   +  +T T  AA
Sbjct: 7   LNDKQEEAMKYT--QGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV ++++                                      E   GL V T
Sbjct: 65  REMKERVTKLLSR-------------------------------------EEAKGLSVST 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNEELKKAFYE 194
            H F   +++       + ++F+I D +  K+++ +   +  L+    ++ E + KA  +
Sbjct: 88  FHTFGLNLLRLELKNLPLKANFSILDADDCKRILMDLMHRDNLS--GAESKELIAKAMKK 145

Query: 195 ILEISND 201
           I +  ND
Sbjct: 146 ISDWKND 152


>gi|194246823|ref|YP_002004462.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
 gi|193807180|emb|CAP18621.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
          Length = 708

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 43/166 (25%)

Query: 15  DLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           + + Q  S+Q    +   ++ ++ A AG+GKT  L  R+  L+   N +   +L +T T 
Sbjct: 5   EYLKQLNSKQYQAVTSKDKAVYLVAGAGTGKTKTLTIRIAYLIKYLNINNEKILAITFTN 64

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA+EM  R++ +                         K D+ K+               
Sbjct: 65  KAASEMKERLVAM-------------------------KVDIYKS--------------T 85

Query: 133 VQTIHAFCEAIMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKST 176
           + T H+    I+++F      N  S+++I D + S K+I++  K  
Sbjct: 86  ICTFHSLGNRILKKFIHVLNNNFDSNYSILDIKDSLKIIKKISKDL 131


>gi|119964140|ref|YP_948452.1| UvrD/REP helicase [Arthrobacter aurescens TC1]
 gi|119950999|gb|ABM09910.1| UvrD/REP helicase [Arthrobacter aurescens TC1]
          Length = 1167

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 18/158 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  + + P     V A AGSGKT  +  RV+ L+      P  +L +T T+ AA E
Sbjct: 39  PTPEQAAIIASPLSPRLVIAGAGSGKTATMADRVVWLVANGWVRPEEVLGVTFTRKAAGE 98

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ R+   +     ++            G       + +A  L           KV T H
Sbjct: 99  LASRIRSKLATLQRIA--------AADDGSIGFPEGLLEADDL---------EPKVSTYH 141

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           ++   I+  + L   I     +    QS +L  E  ++
Sbjct: 142 SYASGIVSDYGLRLGIERDVVLLGGAQSWQLASEVVEA 179


>gi|293609015|ref|ZP_06691318.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829588|gb|EFF87950.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325121212|gb|ADY80735.1| ATP-dependent DNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 679

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 41/184 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++ +++  L+     P   +  +T T  AA EM
Sbjct: 8   NNKQEEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAREM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV ++++                                      E   GL V T H 
Sbjct: 68  KERVTKLLSR-------------------------------------EEAKGLSVSTFHT 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNEELKKAFYEILE 197
           F   +++       + ++F+I D +  K+++ +   +  L+    ++ E + KA  +I +
Sbjct: 91  FGLNLLRLELKNLPLKANFSILDADDCKRILMDLMHRDNLS--GAESKELIAKAMKKISD 148

Query: 198 ISND 201
             ND
Sbjct: 149 WKND 152


>gi|186476506|ref|YP_001857976.1| exodeoxyribonuclease V subunit beta [Burkholderia phymatum STM815]
 gi|184192965|gb|ACC70930.1| exodeoxyribonuclease V, beta subunit [Burkholderia phymatum STM815]
          Length = 1241

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +  +   + A D      + A+AG+GKT  +    +RLLL  N     +L +T TKAA A
Sbjct: 10  AAAQELDVFACDLDGVNQIEASAGTGKTWNICALYVRLLLEKNLSADQILVVTFTKAATA 69

Query: 77  EMSHRVLEIITAWSHLSD------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           E+  R+   +       +      +     + +    +    D+  A  ++   L T   
Sbjct: 70  ELHERIRGRLAEVQRAIETGDDGGDPFIIRLFETTLSEARGVDLEAAAKIVRRALRTFDQ 129

Query: 131 LKVQTIHAFCEAIMQQ 146
             + TIHAFC+  +Q+
Sbjct: 130 AAIHTIHAFCQRALQE 145


>gi|262375711|ref|ZP_06068943.1| ATP-dependent DNA helicase Rep [Acinetobacter lwoffii SH145]
 gi|262309314|gb|EEY90445.1| ATP-dependent DNA helicase Rep [Acinetobacter lwoffii SH145]
          Length = 679

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 42/191 (21%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           + L SQ   +QL A         V A AGSGKT ++ +++  L+         +  +T T
Sbjct: 1   MSLASQLNDKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVKHCGIPAHRITAMTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV +++T                                      E   G+
Sbjct: 61  NKAAREMKERVSKLLTR-------------------------------------EESKGV 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK-LIEEAKKSTLASIMLDNNEELKK 190
            V T H F   +++Q      + ++F+I D +  K+ L++  ++  L+    ++ E + K
Sbjct: 84  SVSTFHTFGLNMLRQELKHTPLKNNFSILDADDCKRILMDLMQRDNLS--GAESKELIAK 141

Query: 191 AFYEILEISND 201
           A   I +  ND
Sbjct: 142 AMKMISDWKND 152


>gi|124514998|gb|EAY56509.1| putative ATP-dependent DNA helicase, UvrD/REP family
           [Leptospirillum rubarum]
          Length = 746

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             ++Q   S       V A AGSGKT +++ R+L LL         LL +T T+ AA E+
Sbjct: 7   NPAQQEAVSHEGGPLLVLAPAGSGKTRVVIARLLYLLDRYGWSEDRLLVVTFTRKAAREL 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR+                                         +  +     V T H+
Sbjct: 67  LHRI---------------------------------------SRLRPSSRPSWVGTFHS 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
               +++Q     ++   F I D     ++I +  
Sbjct: 88  VAARMLRQQAERLDLPREFTIVDGPDQLQMIRDLL 122


>gi|115314538|ref|YP_763261.1| exodeoxyribonuclease V [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502071|ref|YP_001428136.1| exodeoxyribonuclease V, subunit beta [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954227|ref|ZP_06558848.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312347|ref|ZP_06803132.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|115129437|gb|ABI82624.1| exodeoxyribonuclease V [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156252674|gb|ABU61180.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 1217

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 19/186 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ ++ +    + I
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGI 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII- 212
                ++ E  +  + ++  +      +  N  E    + +I ++   E     + +II 
Sbjct: 123 --EMDVSMEVDTSDIFQKVVEDFFRKHI--NKSETNFGYLQIYKLHTPEKFLDDLENIIR 178

Query: 213 SNRTAL 218
           SN   L
Sbjct: 179 SNYEIL 184


>gi|330501223|ref|YP_004378092.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina NK-01]
 gi|328915509|gb|AEB56340.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina NK-01]
          Length = 658

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 38/145 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ +++  L+         ++ +T T  AA EM  RV  ++   
Sbjct: 5   GGPLLVLAGAGSGKTSVITRKIAHLVQNCGIRAQHIVAMTFTNKAAREMKERVGTLLKG- 63

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                    S+AR           GL V T H     I+++   
Sbjct: 64  -------------------------SEAR-----------GLTVSTFHNLGMNIIRKEYA 87

Query: 150 EANITSHFAIADEEQSKKLIEEAKK 174
                  F+I D+   K L+ +  +
Sbjct: 88  RLGYKPGFSIFDDGDIKALLTDIMQ 112


>gi|309378186|emb|CBX23178.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1204

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|262163714|ref|ZP_06031454.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM223]
 gi|262027694|gb|EEY46359.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM223]
          Length = 652

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 43/162 (26%)

Query: 37  SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
            A AGSGKT ++  ++  L+         +  +T T  AA EM  RV + +         
Sbjct: 2   LAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREMKERVAQTLGKAESR--- 58

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                             GL V T H     I+++   +  + +
Sbjct: 59  ----------------------------------GLMVSTFHTLGLNIIRREYKQLGLKA 84

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
            F++ D++    L++E     L    LD +++L +     + 
Sbjct: 85  GFSLFDDQDQMALLKE-----LTEKQLDGDKDLLRLLLSTIS 121


>gi|299771291|ref|YP_003733317.1| ATP-dependent DNA helicase rep [Acinetobacter sp. DR1]
 gi|298701379|gb|ADI91944.1| ATP-dependent DNA helicase rep [Acinetobacter sp. DR1]
          Length = 679

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 41/184 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++ +++  L+     P   +  +T T  AA EM
Sbjct: 8   NNKQEEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAREM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV ++++                                      E   GL V T H 
Sbjct: 68  KERVTKLLSR-------------------------------------EESKGLSVSTFHT 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNEELKKAFYEILE 197
           F   +++       + ++F+I D +  K+++ +   +  L+    ++ E + KA  +I +
Sbjct: 91  FGLNLLRLELKNLPLKANFSILDADDCKRILMDLMHRDNLS--GAESKELIAKAMKKISD 148

Query: 198 ISND 201
             ND
Sbjct: 149 WKND 152


>gi|289640615|ref|ZP_06472787.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509504|gb|EFD30431.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1229

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 36/200 (18%)

Query: 12  ETIDLIS--QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           +  DL+    T  +   A+ P     + A AGSGKT ++  RV+ L+      P  +L L
Sbjct: 59  DLRDLLGVPFTSEQIAAATAPLEPGVIVAGAGSGKTSVMAARVVWLVATGQVAPGDVLGL 118

Query: 69  THTKAAAAEMSHRVLEII--------------------------------TAWSHLSDEI 96
           T T  AA E++ R+   +                                 AW  L  + 
Sbjct: 119 TFTTKAAGELTDRIRRGLAKAGPVGTADGPRGVPPGQREAGVPAAPGAGHGAWGALPGQR 178

Query: 97  LSAEITKIQGKKPNKSDMSKA-RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            +  I+  +   P       A +       +  G   V T H+F + ++    L   +  
Sbjct: 179 GAGLISGPREGDPAGHQEDGAPQPSPGGDSDVDGEPVVSTYHSFAKRLITDHALRLGVEP 238

Query: 156 HFAIADEEQSKKLIEEAKKS 175
            F +  +    +L     + 
Sbjct: 239 GFRLLADATRFQLASRVLRQ 258


>gi|226305706|ref|YP_002765666.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
 gi|226184823|dbj|BAH32927.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
          Length = 1130

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 25/227 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  + + P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 27  PTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARVVWLVANGFVDPEAVLGLTFTRKAAQQ 86

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ R+ + +   +                +  + +   ++R L        G  +V T H
Sbjct: 87  LTSRIRKRLARLAGSD-----------VLRALDPTGGVRSRIL-------AGEPEVSTYH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL 196
           A+   ++ +  L   I     +  E +  ++         + +  D N   + +    + 
Sbjct: 129 AYAGRLLSEHGLLLPIEPSATLLSETELWQVAHRVVSGWDSDLDTDKNPGSITETVLALA 188

Query: 197 EISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
               +   D E L+    ++    KLI    +   +R    K L + 
Sbjct: 189 GQLAEHLVDPEQLLE---AHTELDKLIHTLPAGPKQRGGPSKELLNY 232


>gi|89256059|ref|YP_513421.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009877|ref|ZP_02274808.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89143890|emb|CAJ79108.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica LVS]
          Length = 1217

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 19/186 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ ++ +    + I
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGI 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII- 212
                ++ E  +  + ++  +      +  N  E    + +I ++   E     + +II 
Sbjct: 123 --EMDVSMEVDTSDIFQKVVEDFFRKHI--NKSETNFGYLQIYKLHTPEKFLDDLENIIR 178

Query: 213 SNRTAL 218
           SN   L
Sbjct: 179 SNYEIL 184


>gi|152991215|ref|YP_001356937.1| ATP-dependent DNA helicase UvrD [Nitratiruptor sp. SB155-2]
 gi|151423076|dbj|BAF70580.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp.
           SB155-2]
          Length = 681

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 40/159 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           + ++ +++ + E     D      + A AGSGKT  +  R+  L+     P+++L LT T
Sbjct: 3   KILEDLNEAQREAAQTVD--GPILILAGAGSGKTKTITTRLAYLISLGIDPASILTLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R L ++ +                               L   +L      
Sbjct: 61  NKAAKEMRERALSMLDS------------------------------ALYPPLL------ 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
              T H F    ++    + +  ++F I D +  K++I+
Sbjct: 85  --CTFHKFGLLFLKFHIDKLDRDNNFVIIDTDDKKRIIK 121


>gi|302669183|ref|YP_003832333.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302396847|gb|ADL35751.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 718

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 42/166 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            E ++ ++  + E +++++      V A AGSGKT  L  R   L+      P  +LC+T
Sbjct: 1   MELLEQLNHAQKEAVISTE--GYIRVIAGAGSGKTRALSTRFAYLVNGLGIMPGHILCVT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  +A EM  R+  +                                            
Sbjct: 59  FTNKSANEMRQRIHALTGDNDTGY------------------------------------ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + T H FC +++Q+         +F + D      +++   + 
Sbjct: 83  ---INTFHGFCVSVLQEDSHAVQYPKNFLVLDNSDIDDMLKIIYEE 125


>gi|110004261|emb|CAK98599.1| putative atp-dependent dna helicase pcra protein [Spiroplasma
           citri]
          Length = 730

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           +E I+ ++  + E +LA   T    + A AGSGKT I+  ++  L+  AN  P  +  +T
Sbjct: 3   NEFIENLNPNQREAVLAI--TGPVRIIAGAGSGKTRIITNKIAYLIKYANLQPWRICAVT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  A  EM  R++++I                                        +  
Sbjct: 61  FTNKATNEMKTRIVDMIG--------------------------------------NSGQ 82

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + T HA C  I+++  +  N    F I D      +I    K+ 
Sbjct: 83  RCLIATYHALCVRILREDIIHLNYDRQFNIIDMADQDSIIRNIYKTL 129


>gi|311743792|ref|ZP_07717598.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311312922|gb|EFQ82833.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 1047

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 35/162 (21%)

Query: 17  ISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           I  +  ++   + P      + A AGSGKT ++  RV+ L+      P  +L LT T  A
Sbjct: 23  IDYSDEQRAAITAPQHGTHAIIAGAGSGKTAVMAARVVWLVGHERVDPERVLGLTFTAKA 82

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAE++ RV   +     + D                                  G   + 
Sbjct: 83  AAELAGRVRASLATALDMGDA---------------------------------GEPTIS 109

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T HAF   ++ +  L   +     +  + +  +L+    +  
Sbjct: 110 TYHAFAGRLIAEHGLRLGLEPDLRVLTDARRHQLVVRVLRRV 151


>gi|148980789|ref|ZP_01816220.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrionales bacterium
           SWAT-3]
 gi|145961078|gb|EDK26398.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrionales bacterium
           SWAT-3]
          Length = 1224

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 25/168 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH------------------PSTLLCLTHTKAAAA 76
            + A+AG+GKT  +    LRLLL +                       +L +T T+AA  
Sbjct: 27  LIEASAGTGKTFTIAGLYLRLLLGHGTTAPQGELTEATRHHEPLTVDQILVVTFTEAATT 86

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   I           S +       +  +     A+ LL           V TI
Sbjct: 87  ELRDRIRARIHDARIAFSRGQSDDPVIAPLLQEIEDHAGAAKTLL-NAERQMDEAAVYTI 145

Query: 137 HAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           H FC+ ++ Q   E+     + F + DE     L  +           
Sbjct: 146 HGFCQRMLTQNAFESGSRFDNEF-VTDESH---LKAQVVADYWRKQFY 189


>gi|240080267|ref|ZP_04724810.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA19]
 gi|240123060|ref|ZP_04736016.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID332]
 gi|268596417|ref|ZP_06130584.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19]
 gi|268681687|ref|ZP_06148549.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332]
 gi|268550205|gb|EEZ45224.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19]
 gi|268621971|gb|EEZ54371.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332]
          Length = 1200

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|229490998|ref|ZP_04384831.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
 gi|229322114|gb|EEN87902.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
          Length = 1130

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 25/227 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  + + P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 27  PTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARVVWLVANGFVDPEAVLGLTFTRKAAQQ 86

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ R+ + +   +                +  + +   ++R L        G  +V T H
Sbjct: 87  LTSRIRKRLARLAGSD-----------VLRALDPTGGVRSRIL-------AGEPEVSTYH 128

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL 196
           A+   ++ +  L   I     +  E +  ++         + +  D N   + +    + 
Sbjct: 129 AYAGRLLSEHGLLLPIEPSATLLSETELWQVAHRVVSGWDSDLDTDKNPGSITETVLALA 188

Query: 197 EISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
               +   D E L+    ++    KLI    +   +R    K L + 
Sbjct: 189 GQLAEHLVDPEQLLE---AHTELDKLIHTLPAGPKQRGGPSKELLNY 232


>gi|297567904|ref|YP_003686874.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296852353|gb|ADH65366.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 646

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 48/147 (32%), Gaps = 38/147 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
              A V A AG+GKT  L QRV  L+     P ++  +T T  AA EM  R+  ++ A  
Sbjct: 9   EGPALVFAGAGAGKTRTLTQRVKWLVEEGEDPYSITLVTFTNKAAGEMKERIARLVEA-- 66

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                   + V T H FC   +Q +  E
Sbjct: 67  -----------------------------------PLAEAVWVGTFHRFCLQSLQVYGRE 91

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTL 177
             +    A+ D    +KL E       
Sbjct: 92  IGLE-KVAVLDSAAQRKLAERIIAGLF 117


>gi|187250626|ref|YP_001875108.1| superfamily I DNA and RNA helicase [Elusimicrobium minutum Pei191]
 gi|186970786|gb|ACC97771.1| Superfamily I DNA and RNA helicase [Elusimicrobium minutum Pei191]
          Length = 786

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 44/195 (22%)

Query: 13  TIDLI--SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           +ID +  S    +Q           + A AG+GKT  L  R+  L+    +P+ +L +T 
Sbjct: 2   SIDYLLQSLNPMQQEAVLHQNGPCLIIAGAGTGKTKTLTTRIAALIENGVNPNRILAVTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAA+M  RV  +    S                                      G 
Sbjct: 62  TNKAAAQMRERVEALAPGQS--------------------------------------GR 83

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + + T H+F   +++Q      +T  FAI DE + KK+I       L  +   + ++   
Sbjct: 84  VWIHTFHSFGVRLLRQNAHLLKLTKDFAIYDESEQKKII----TLVLQEMGQKDAKKEIN 139

Query: 191 AFYEILEISNDEDIE 205
            +  ++  + D+ I+
Sbjct: 140 QYISLISRAKDDMID 154


>gi|240115219|ref|ZP_04729281.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID18]
 gi|260440963|ref|ZP_05794779.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI2]
 gi|268600900|ref|ZP_06135067.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18]
 gi|291044290|ref|ZP_06569999.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2]
 gi|268585031|gb|EEZ49707.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18]
 gi|291011184|gb|EFE03180.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2]
          Length = 1200

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|254493282|ref|ZP_05106453.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291]
 gi|293399482|ref|ZP_06643635.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62]
 gi|226512322|gb|EEH61667.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291]
 gi|291610051|gb|EFF39173.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62]
          Length = 1200

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|217967135|ref|YP_002352641.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
 gi|217336234|gb|ACK42027.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
          Length = 655

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 45/216 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++ +  +    + V A  GSGKT  +V RV  L+     P  ++ LT T  AA  M 
Sbjct: 31  NEEQRKIVLESDGPSLVIAGPGSGKTRTIVYRVGYLVALGYSPQNIMLLTFTNQAARHMI 90

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +R           +  ++  +I +I G                            T H  
Sbjct: 91  NR-----------TQALIREDIEEIWG---------------------------GTFHHV 112

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              I++ +     I   + I D E S  LI+E  +       +     L + F    +++
Sbjct: 113 GNRILRIYGKRIGIGGQYNILDREDSLDLIDECLEELFPKEDVGKGM-LGEIFS--YKVN 169

Query: 200 NDEDIETLIS----DIISNRTALKLIFFFFSYLWRR 231
             +D E ++      II     ++ +F  +    R 
Sbjct: 170 TGKDWEEVLKIKAPQIIDKIEIIQKLFERYKERKRE 205


>gi|124022671|ref|YP_001016978.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9303]
 gi|123962957|gb|ABM77713.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
           MIT 9303]
          Length = 1274

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 12/170 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L    LRLL    H  S LL +T T+AAAAE+  R+ + +       
Sbjct: 25  LLEASAGTGKTFALAHLALRLLTEGGHQISELLVVTFTEAAAAELRSRIGQRLEHALEGL 84

Query: 94  DEILSAEITK---------IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           + +      K         +Q    + S   +    L+  LE+     + TIH FC   +
Sbjct: 85  EALDHGATDKPPDLVLEQWLQCNGHDVSQRHQWISSLLVALESLDLADITTIHGFCRRTL 144

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           ++  LE+       + D  Q   L++E         +L  + +  +    
Sbjct: 145 RRQALESGAVMDPRLDDSGQQ--LVQEVVHDYWQQQVLALDAQHVRGLLH 192


>gi|150398844|ref|YP_001322611.1| UvrD/REP helicase [Methanococcus vannielii SB]
 gi|150011547|gb|ABR53999.1| UvrD/REP helicase [Methanococcus vannielii SB]
          Length = 1016

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 40/148 (27%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +  +S++           + A  GSGKT  + ++V  L   N     +L LT ++ AA E
Sbjct: 4   NPNESQKNAIEYLKGPLLILAGPGSGKTFTITEKVAHL-TKNMEKKKILALTFSEKAAKE 62

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+   +                                            + V T H
Sbjct: 63  MLDRIESELGK---------------------------------------NNEITVSTFH 83

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQS 165
           +FC  ++++F L+  I+ +  +  +E +
Sbjct: 84  SFCNELIKEFALDIGISKNPKLISKEHA 111


>gi|296270932|ref|YP_003653564.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093719|gb|ADG89671.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1128

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 28/169 (16%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S +E +  + + + T  +  + + P     V A AGSGK+  +  RV+ L+      P  
Sbjct: 13  SPEEIAAKLGIPAPTPEQAEVIAAPLEPMVVVAGAGSGKSETMAGRVVWLVANGFVRPDQ 72

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T  AAAE++ RV + +             ++       P   D   A       
Sbjct: 73  VLGLTFTNKAAAELAERVRKRLG------------QLAASGLIPPELLDHEPA------- 113

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                   V T HA+   +     L   +     +A    + +L  +  
Sbjct: 114 --------VSTYHAYAARLFTDHALRDGLEPAMRLATPAVAWQLAAQVV 154


>gi|145238554|ref|XP_001391924.1| ATP-dependent DNA helicase [Aspergillus niger CBS 513.88]
 gi|134076415|emb|CAK39643.1| unnamed protein product [Aspergillus niger]
          Length = 1003

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 45/219 (20%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCL 68
            +  +D ++  ++     + P     V A  GSGKT  L  RV  LL      P  ++C 
Sbjct: 1   MAPILDGLNSAQT--AAVASPAPILQVLAPPGSGKTKTLTARVAYLLAHHGYRPQDVICC 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  A+ EM  R+ ++I                               + L++      
Sbjct: 59  TFTIKASREMRERLAKLIGD--------------------------ELQKKLIL------ 86

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
                 T H+ C   +  +     +   F IAD   S  +I+   K     + +  N   
Sbjct: 87  -----GTFHSICRRYLVTYGYLIGLKKGFGIADSGDSLAIIKRIVKRL--QVGIQPNAAR 139

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
            +  ++     +    + L + +  N   L+   F   Y
Sbjct: 140 ARISHQKAHGVS---PDELAAKLNKNSKVLEQREFVQVY 175


>gi|319776263|ref|YP_004138751.1| Exodeoxyribonuclease V subunit beta [Haemophilus influenzae F3047]
 gi|317450854|emb|CBY87078.1| Exodeoxyribonuclease V beta chain [Haemophilus influenzae F3047]
          Length = 1211

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 20/195 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA++   D+       +      +  D+ +A H L    +      + TIH F
Sbjct: 79  TDAIDKLTAFAKTQDKSAFKN-DEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ Q+   + I  HF +   +    L+               + E         E+ 
Sbjct: 138 CRRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFYPLDFESANFIAT--ELV 193

Query: 200 NDEDIETLISDIISN 214
           + E++ +L+   +  
Sbjct: 194 SPENVLSLLKADLGK 208


>gi|240127764|ref|ZP_04740425.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|268686157|ref|ZP_06153019.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626441|gb|EEZ58841.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 1200

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|238021964|ref|ZP_04602390.1| hypothetical protein GCWU000324_01869 [Kingella oralis ATCC 51147]
 gi|237866578|gb|EEP67620.1| hypothetical protein GCWU000324_01869 [Kingella oralis ATCC 51147]
          Length = 1220

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 21/149 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +     RL LL       +L +T TKAA AE+  R+   +       
Sbjct: 19  LIEASAGTGKTWNIAALFTRLVLLEQQSVEKILVVTFTKAATAELKTRLRARLDQALTAL 78

Query: 94  DEILSAE--------------------ITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
               +A+                    +  +  +        + +  L   +       +
Sbjct: 79  KRTPNAQTQPEILRQNSLDDKNRPDDFLFNLLSQALASESQDRLQLRLTAAISNFDNAAI 138

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADE 162
            TIH FC+ I+Q F        +  + ++
Sbjct: 139 YTIHGFCQRILQDFAFYCQAPFNIQLNED 167


>gi|255507242|ref|ZP_05382881.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis D(s)2923]
 gi|289525682|emb|CBJ15163.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis Sweden2]
 gi|296435250|gb|ADH17428.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis E/150]
 gi|296438969|gb|ADH21122.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis E/11023]
          Length = 1026

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 9/194 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +   ++ A+AG+GKT  + Q VLR LL         +L +T T AA  E+  R+   +  
Sbjct: 14  SGKFFLEASAGTGKTFTIEQVVLRSLLEGPIEQTKNILVVTFTNAATNELKLRIQASLKQ 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ- 146
              L  + LS   T +     +     K  ++ +   L T   + + TIH FC   ++Q 
Sbjct: 74  ALSLFSQALSHPGTPLPPYISSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQH 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIE 205
           FP    I    +I  E Q+   I++     L   + D      + AF      +  +   
Sbjct: 134 FPWIQPIQPS-SIFSEPQT---IQQYILDYLRKNLWDTVLSPKQYAFLSYHHRATTQQTR 189

Query: 206 TLISDIISNRTALK 219
            LI  ++ + T+  
Sbjct: 190 HLIERLLQDYTSTP 203


>gi|91202090|emb|CAJ75150.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis]
          Length = 641

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 40/179 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           DL S  ++++           V A  GSGKT +L  R+ R+L         +L LT T  
Sbjct: 3   DLSSLNENQREAVLWDKGPLLVLAGPGSGKTSVLTHRIARILEQSKGQHFRILALTFTNK 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAE+  RV +++                                            +++
Sbjct: 63  AAAEVRGRVEKLVPGE--------------------------------------LSRVRL 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            T H++   ++QQ     +    F I  ++   + L+++        +     +  K A
Sbjct: 85  TTFHSYAAELLQQHGNHLSFRPDFQILSNDADREALLDDVLGRLRKDMAYSLPDHFKAA 143


>gi|59800814|ref|YP_207526.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|59717709|gb|AAW89114.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
          Length = 1200

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|322805638|emb|CBZ03203.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 549

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 40/154 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ + +   ++  + ++AG+GKT  L  R+ +++  +      +LCLT T  A  EM
Sbjct: 7   NDKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGKIIAKDLALGEQILCLTFTNRACKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +++E +                                            + V+T H+
Sbjct: 67  KEKIIETVGKEGL--------------------------------------KVTVKTFHS 88

Query: 139 FCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEE 171
           FC  ++++   +  +I+  F I DEE +K++I E
Sbjct: 89  FCFDVIKKEAKKNTDISFDFTIYDEEDTKEIISE 122


>gi|329123403|ref|ZP_08251967.1| exodeoxyribonuclease V beta subunit [Haemophilus aegyptius ATCC
           11116]
 gi|327470985|gb|EGF16440.1| exodeoxyribonuclease V beta subunit [Haemophilus aegyptius ATCC
           11116]
          Length = 1211

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 20/195 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA++   D+       +      +  D+ +A H L    +      + TIH F
Sbjct: 79  TDAIDKLTAFAKTQDKSAFKN-DEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ Q+   + I  HF +   +    L+               + E         E+ 
Sbjct: 138 CRRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFYPLDFESANFIAT--ELV 193

Query: 200 NDEDIETLISDIISN 214
           + E++ +L+   +  
Sbjct: 194 SPENVLSLLKADLGK 208


>gi|240016125|ref|ZP_04722665.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA6140]
          Length = 1200

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|240125312|ref|ZP_04738198.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268683914|ref|ZP_06150776.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624198|gb|EEZ56598.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 1200

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|261350758|ref|ZP_05976175.1| DNA helicase II [Methanobrevibacter smithii DSM 2374]
 gi|288860513|gb|EFC92811.1| DNA helicase II [Methanobrevibacter smithii DSM 2374]
          Length = 994

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 45/210 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
             ++++  +  +   V A  GSGKT ++++RV  L+     +PS+LL +T T+ AA E+ 
Sbjct: 5   NQQKVVEYNGNKPLLVEAGPGSGKTRVIIERVKFLINELKVNPSSLLVITFTRKAANELK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ E I                                            +++ TIH+F
Sbjct: 65  DRLSEDIPK-------------------------------------NIINEMQISTIHSF 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL--ASIMLDNNEELKKAFYEILE 197
           C   +++     N+       D  + ++L  +  K  L   +     + ++     +  E
Sbjct: 88  CLDFLKKRGNVTNLIDD----DSGEKRRLFIQKYKYKLGFKNEFYLADYQIPSVINKFDE 143

Query: 198 ISNDE-DIETLISDIISNRTALKLIFFFFS 226
            +  + DI+ LI  I   R   K    F +
Sbjct: 144 YTTFKVDIDGLIDYIKQTRPIDKEYVDFVN 173


>gi|145597048|ref|YP_001161345.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145306385|gb|ABP56967.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 1067

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 66/207 (31%), Gaps = 39/207 (18%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +++ AS P     + A  G+GKT  L  R+  L    N  P   L +T T+ AA E+ HR
Sbjct: 522 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPERCLAITFTRRAAEELRHR 581

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +  ++   +                                        + V T H+   
Sbjct: 582 LDGLLGPVAE--------------------------------------DVTVGTFHSVGL 603

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+++    A +   F IAD+        EA       + L   ++L      +      
Sbjct: 604 QILRENREAAGLPVDFRIADDADRAAARSEAGDDPDTYLALLRKQDLIDLDELLTLPLAL 663

Query: 202 EDIETLISDIISNRTALKLIFFFFSYL 228
              +  ++D   +R     +  +    
Sbjct: 664 LRADRRLADSYRDRWQWIFVDEYQDVD 690


>gi|240117506|ref|ZP_04731568.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID1]
 gi|268603206|ref|ZP_06137373.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1]
 gi|268587337|gb|EEZ52013.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1]
          Length = 1200

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|194098105|ref|YP_002001153.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|193933395|gb|ACF29219.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
          Length = 1200

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|169634040|ref|YP_001707776.1| ATP-dependent DNA helicase [Acinetobacter baumannii SDF]
 gi|169152832|emb|CAP01861.1| ATP-dependent DNA helicase [Acinetobacter baumannii]
          Length = 679

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 41/184 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++ +++  L+     P   +  +T T  AA EM
Sbjct: 8   NNKQEEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAREM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV ++++                                      E   GL V T H 
Sbjct: 68  KERVTKLLSR-------------------------------------EEAKGLSVSTFHT 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNEELKKAFYEILE 197
           F   +++       + ++F+I D +  K+++ +   ++ L+    ++ E + KA  +I +
Sbjct: 91  FGLNLLRLELKNLPLKANFSILDADDCKRILMDLMHRNNLS--GAESKELIAKAMKKISD 148

Query: 198 ISND 201
             ND
Sbjct: 149 WKND 152


>gi|254669882|emb|CBA04366.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           alpha153]
          Length = 1204

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|240112479|ref|ZP_04726969.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae MS11]
 gi|268598547|ref|ZP_06132714.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11]
 gi|268582678|gb|EEZ47354.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11]
          Length = 1200

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas arsenicoxydans]
 gi|133739286|emb|CAL62335.1| putative DNA helicase II [Herminiimonas arsenicoxydans]
          Length = 975

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 35/163 (21%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
           L S+  ++Q+           + A  GSGKT  LV+R++ L+      P +L  +T T  
Sbjct: 12  LQSKANAQQIEAILATDGPVLIIAGPGSGKTFTLVERIVYLITNKGIAPESLFVVTFTDK 71

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E++ R+   +                                     I      + +
Sbjct: 72  AARELTTRISNRLAELG---------------------------------IQFNLNEMYL 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C  +++ +     +   F + D+   +  + +  K  
Sbjct: 99  GTFHSICLRLLEDYREFTRLKRSFTLFDQFDQQYFLYQRIKDF 141


>gi|167627907|ref|YP_001678407.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597908|gb|ABZ87906.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 671

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
           +    V A AGSGKT ++++++  L+    +P  ++L +T T  AA EM  RV   +   
Sbjct: 17  STPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKLRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKRHFS 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           +     +F + D   S  LI +    
Sbjct: 100 DLGYKKNFTLFDSHDSLALIYDIAYE 125


>gi|294788471|ref|ZP_06753714.1| exodeoxyribonuclease V, beta subunit [Simonsiella muelleri ATCC
           29453]
 gi|294483902|gb|EFG31586.1| exodeoxyribonuclease V, beta subunit [Simonsiella muelleri ATCC
           29453]
          Length = 1206

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVL----EIITAW 89
            + A+AG+GKT  +     RL LL +   +T+L +T TKAA AE+  R+     E ++  
Sbjct: 17  LIEASAGTGKTWNIAALFTRLILLEHYRINTILVVTFTKAATAELKTRLRIRLDETLSIL 76

Query: 90  SHLSDEI---------------LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           +   D                 L   +  +  +   K D ++ +  L   +       + 
Sbjct: 77  NRTPDAANNFDLLKQNCHSNGKLDEFLLNLIQQALQKEDQARLQLRLKAAISEFDNAAIY 136

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167
           TIH FC+ ++Q F     +   F I  +EQS +
Sbjct: 137 TIHGFCQRVLQDFAFLCQVP--FDIQLDEQSAE 167


>gi|239998560|ref|ZP_04718484.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae 35/02]
 gi|240013685|ref|ZP_04720598.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI18]
 gi|240120754|ref|ZP_04733716.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID24-1]
 gi|268594420|ref|ZP_06128587.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02]
 gi|268547809|gb|EEZ43227.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02]
 gi|317163836|gb|ADV07377.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 1200

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAEITK--------------IQGKKPNKSDMS 115
             R+   +            + L D+ LS  I                +  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|254245830|ref|ZP_04939151.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184]
 gi|124870606|gb|EAY62322.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184]
          Length = 1235

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 17  ISQTKSEQLLASDPTRSAW-----VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           +S    +Q L  D           + A+AG+GKT  +    +RLLL  +     +L +T 
Sbjct: 1   MSAVPQQQALELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLLEKDLGADEILVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSD------EILSAEITKIQGKKPNKSDMSKARHLLITI 124
           TKAA AE+  R+   +   +H  D      +   A + +         D   A   +   
Sbjct: 61  TKAATAELHERIRSRLAQLAHALDTGDDGGDPFIARLLETTLGDDGALDSETAAKRIRRA 120

Query: 125 LETPGGLKVQTIHAFCEAIMQQ 146
           L       + TIHAFC+  +Q+
Sbjct: 121 LRAFDQAAIHTIHAFCQRALQE 142


>gi|257453952|ref|ZP_05619228.1| ATP-dependent DNA helicase Rep [Enhydrobacter aerosaccus SK60]
 gi|257448617|gb|EEV23584.1| ATP-dependent DNA helicase Rep [Enhydrobacter aerosaccus SK60]
          Length = 679

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +Q      +    V A AGSGKT ++ +++  L+     P   +  +T T  A
Sbjct: 1   MSQLNPRQQEAMQYVSGPLLVLAGAGSGKTSVITRKIAYLIEECQMPAERITAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV +++ +                                     +   GL V 
Sbjct: 61  AREMKARVQKLLPS-------------------------------------DKTKGLTVS 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193
           T H F    ++   L   +  +F+I D E SK+L+ +   +  ++    ++ E + KA  
Sbjct: 84  TFHQFGLQFLRYELLHTPLKGNFSIMDAEDSKRLLMDLMVRDNMS--GAESRELVGKAIK 141

Query: 194 EILEISND 201
            I +  ND
Sbjct: 142 MISDWKND 149


>gi|148262658|ref|YP_001229364.1| exodeoxyribonuclease V, beta subunit [Geobacter uraniireducens Rf4]
 gi|146396158|gb|ABQ24791.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter
           uraniireducens Rf4]
          Length = 1085

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +    LRL+L        +L +T T+AA  E+    +      +  +
Sbjct: 16  LIEASAGTGKTFTIAGIYLRLVLERQLAVGDILVVTFTEAATKELRE-RIRERLREAENA 74

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
             I ++    + G   +  D + AR LL T L +     + TIH FC+ ++Q+ P E+  
Sbjct: 75  FAIGTSSDRLLAGLLESAIDRAAARRLLTTALRSFDEASIFTIHGFCQRMLQENPFESG- 133

Query: 154 TSHFAIADEE---QSKKLIEEAKKSTLA 178
               ++ D E     + L+ E       
Sbjct: 134 ----SLYDTELVTDQQGLLREIAADYWR 157


>gi|300779590|ref|ZP_07089446.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium
           ATCC 33030]
 gi|300533700|gb|EFK54759.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium
           ATCC 33030]
          Length = 1100

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
              +    T  +  +         V A AG+GKT  +  RV+ L+      P  +L LT 
Sbjct: 12  YLKEKFPPTDQQAAVIGADPGPLLVVAGAGAGKTETMAARVVWLVANGYVRPEEVLGLTF 71

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+ AA E+  R+   +   +  ++E L   +    G       ++               
Sbjct: 72  TRKAAHELGRRIRTRLEKLA--ANEQLVRHLDPSGGLAETLEVIAP-------------- 115

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             V T  AF   +++++ L   +     +  + +
Sbjct: 116 -TVSTYDAFAGDLIREYGLLVPVEPDARLITDAE 148


>gi|70989347|ref|XP_749523.1| ATP-depentend DNA helicase [Aspergillus fumigatus Af293]
 gi|66847154|gb|EAL87485.1| ATP-depentend DNA helicase, putative [Aspergillus fumigatus Af293]
          Length = 1001

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 50/158 (31%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             +++   + P     V A  GSGKT  L  RV  LL      P  ++C T T  A+ EM
Sbjct: 9   NSAQKAAVTSPASVLQVLAPPGSGKTKTLTARVAYLLSHYGYQPQDVICCTFTIKASREM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++                                       E    L + T H+
Sbjct: 69  RERLASLVGN-------------------------------------EVQSRLILGTFHS 91

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C   +  +     +   F IAD   S  +I+   K  
Sbjct: 92  ICRRYLVSYGYLIGLRKGFGIADSSDSLAIIKRIVKRL 129


>gi|170732538|ref|YP_001764485.1| exodeoxyribonuclease V subunit beta [Burkholderia cenocepacia
           MC0-3]
 gi|169815780|gb|ACA90363.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 1235

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 17  ISQTKSEQLLASDPTRSAW-----VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           +S    +Q L  D           + A+AG+GKT  +    +RLLL  +     +L +T 
Sbjct: 1   MSAVPQQQALELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLLEKDLGADEILVVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSD------EILSAEITKIQGKKPNKSDMSKARHLLITI 124
           TKAA AE+  R+   +   +H  D      +   A + +         D   A   +   
Sbjct: 61  TKAATAELHERIRSRLAQLAHALDTGDDGGDPFIARLLETTLGDDGALDSETAAKRIRRA 120

Query: 125 LETPGGLKVQTIHAFCEAIMQQ 146
           L       + TIHAFC+  +Q+
Sbjct: 121 LRAFDQAAIHTIHAFCQRALQE 142


>gi|159128934|gb|EDP54048.1| ATP-depentend DNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 1001

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 50/158 (31%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             +++   + P     V A  GSGKT  L  RV  LL      P  ++C T T  A+ EM
Sbjct: 9   NSAQKAAVTSPASVLQVLAPPGSGKTKTLTARVAYLLSHYGYQPQDVICCTFTIKASREM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++                                       E    L + T H+
Sbjct: 69  RERLASLVGN-------------------------------------EVQSRLILGTFHS 91

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C   +  +     +   F IAD   S  +I+   K  
Sbjct: 92  ICRRYLVSYGYLIGLRKGFGIADSSDSLAIIKRIVKRL 129


>gi|254491814|ref|ZP_05104993.1| ATP-dependent DNA helicase Rep [Methylophaga thiooxidans DMS010]
 gi|224463292|gb|EEF79562.1| ATP-dependent DNA helicase Rep [Methylophaga thiooxydans DMS010]
          Length = 663

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 35/150 (23%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ +++  L+     +   +  +T T  AA EM  RV E++   
Sbjct: 5   DGPLLVLAGAGSGKTRVITRKIAYLIEQCGINARNIAAVTFTNKAAREMKSRVSELMATR 64

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
            +                                   +  GL V T H     I+++   
Sbjct: 65  ENA----------------------------------SARGLMVSTFHTLGLNILRREYK 90

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                S F+I D + S  ++ +      A+
Sbjct: 91  HLGFRSGFSIFDAQDSLAVLRDLMGRDFAA 120


>gi|118475031|ref|YP_892129.1| UvrD/REP helicase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414257|gb|ABK82677.1| UvrD/REP helicase [Campylobacter fetus subsp. fetus 82-40]
          Length = 679

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 29/216 (13%)

Query: 17  ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQ   A+ PT    V A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3   LSKLNREQYTAATAPTGYNLVIASAGTGKTSTIVARIAHLLNLGMKPERILLLTFTNKAA 62

Query: 76  AEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           +EM  R+      + + +    +   +S  + K   K       S+ + LL +++E    
Sbjct: 63  SEMIDRLSNYFSAKTVGSIMAGTFHSVSNSLLKKLNKGVILKQPSELKTLLKSLVERRE- 121

Query: 131 LKVQTIHAFCEAI--MQQF--PLEANITSHF---AIADEEQSKKLIEEAKKSTLASIMLD 183
                       I  ++ +      ++ S F    + DE  ++   E     T   +  +
Sbjct: 122 ---------FHRIGEVKAYSGAYLYDVYSLFCNSCVNDESFAQWFSENYSDQT---VYAE 169

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALK 219
             E++ + F E     N  D   L+  +   R  LK
Sbjct: 170 VYEDILREFEEQKSRFNYADFNDLLIKM---RNELK 202


>gi|313668736|ref|YP_004049020.1| exodeoxyribonuclease V beta chain [Neisseria lactamica ST-640]
 gi|313006198|emb|CBN87660.1| putative exodeoxyribonuclease V beta chain [Neisseria lactamica
           020-06]
          Length = 1204

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 29/174 (16%)

Query: 25  LLASDP-----TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           + A DP     + +  + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+
Sbjct: 5   IRAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAEL 64

Query: 79  SHRVLEII---------TAWSHLSDEILSAE--------------ITKIQGKKPNKSDMS 115
             R+   +            + L D+ LS                + ++  +   K   +
Sbjct: 65  KTRLRARLDDVLQVLESKEIAKLGDDTLSDGTAAYCAEHHEGDTFLPELLKQALQKEGRT 124

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +    L   +       + TIH FC+ I++ +           + +E+  + L+
Sbjct: 125 RLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|284006571|emb|CBA71832.1| ATP-dependent DNA helicase [Arsenophonus nasoniae]
          Length = 654

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 42/168 (25%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A AGSGKT ++  ++  L+      P  +  +T T  AA EM  RV + +       
Sbjct: 1   MVLAGAGSGKTRVITHKIAYLIRQRGYLPRQVAAVTFTNKAAREMKERVGQTLGKKETR- 59

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                               GL V T H     I+++      +
Sbjct: 60  ------------------------------------GLMVATFHTLGLEIIKREYSALGL 83

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++F++ DE     L++E     L     ++ + L++    I    +D
Sbjct: 84  KANFSLFDEHDQMALLKELTFDLLE----EDKDLLRQLASTISNWKSD 127


>gi|121634579|ref|YP_974824.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           FAM18]
 gi|20271140|gb|AAM18525.1|AF495855_1 RecB [Neisseria meningitidis]
 gi|120866285|emb|CAM10026.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
           FAM18]
          Length = 1204

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 855

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ + +   ++  + ++AG+GKT  L  R+  ++  N      +LCLT T  A  EM
Sbjct: 7   NDKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +++E +                                            + V+T H+
Sbjct: 67  KEKIIETVGKEGL--------------------------------------KVTVKTFHS 88

Query: 139 FCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172
           FC  ++++   +  +I+  F I DEE +K++I E 
Sbjct: 89  FCFDVIKKEAKKNTDISFDFTIYDEEDTKEIISEL 123


>gi|291037246|ref|ZP_06568210.1| UvrD/REP helicase [Gluconacetobacter xylinus NBRC 3288]
          Length = 683

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 39/161 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +     EQ  A+       V A AG+GKT  L   V   + L    P  +LC+T T  AA
Sbjct: 15  LDSLTPEQRRAAMALGYVLVLAGAGTGKTKTLTAGVATRVGLHGMVPGQILCVTFTNKAA 74

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ +++  +S  +                                       + T
Sbjct: 75  QEMRKRIGDVLGTYSVPT--------------------------------------WLGT 96

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            HA     ++  P  A + S F I D E S  ++    ++ 
Sbjct: 97  FHALAARQLRAEPEVAQLRSGFDIRDAEDSLAIVRRLIRTV 137


>gi|307730045|ref|YP_003907269.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1003]
 gi|307584580|gb|ADN57978.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1003]
          Length = 1232

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   +       +
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +     + +         D   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 87  MDDDGGDPFIRRLFETTLAPERGVDREAAAKVVRRALRTFDQAAIHTIHAFCQRALQE 144


>gi|83589123|ref|YP_429132.1| UvrD/REP helicase [Moorella thermoacetica ATCC 39073]
 gi|83572037|gb|ABC18589.1| UvrD/REP helicase [Moorella thermoacetica ATCC 39073]
          Length = 1232

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 52/174 (29%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +    +Q   +  T    V A  G+GKT  LV R+  L+      P  +  +T T  AAA
Sbjct: 535 ALNPEQQSAVTAATGPVVVIAGPGTGKTRTLVYRLAYLIKERGVAPGEIAAVTFTNKAAA 594

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV +++     +                                      L V T 
Sbjct: 595 EIRQRVADLLGDRDGME------------------------------------SLTVGTF 618

Query: 137 HAFCEAIMQQF---PLEANI------------TSHFAIADEEQSKKLIEEAKKS 175
           H+ C  ++Q        A++            +    + DE  +++++      
Sbjct: 619 HSICLDLLQSSLTGSPGADLQGKPVGTTDTPASPRLTVVDEADAREILAGVLAE 672


>gi|325131981|gb|EGC54680.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M6190]
 gi|325137812|gb|EGC60387.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
           ES14902]
          Length = 1204

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|241203012|ref|YP_002974108.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856902|gb|ACS54569.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 685

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q +A +               V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 2   YLEKLNPQQRMAVEHGTLIDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T                    S  +   ++  + +I       +    A  L  +   
Sbjct: 62  LMTF-------------------SRRAAAEMARRVERICRDVLGANAGVMADALSWS--- 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     +++ +  +  +   F I D E S  L+   +   
Sbjct: 100 -------GTFHGIGARLLRDYAEQIGLDPGFTIHDREDSADLMNLIRHDL 142


>gi|322378864|ref|ZP_08053281.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
 gi|321148674|gb|EFX43157.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
          Length = 654

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++     +      P     V A+AG+GKT  +V R+L LL +   P  +L LT T  A+
Sbjct: 1   MLQLNSEQLQAIKAPLGHNLVIASAGTGKTSTIVGRILHLLTSGIDPRQILLLTFTNKAS 60

Query: 76  AEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITIL 125
            EM  R+         +       ++    K+Q    +    +  + LL + L
Sbjct: 61  QEMKERLARYTKEAEKIEAGTFHAVAYRFLKLQDPSLSLKQPTDMQTLLKSFL 113


>gi|84388923|ref|ZP_00991131.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio splendidus 12B01]
 gi|84376987|gb|EAP93859.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio splendidus 12B01]
          Length = 1224

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 25/168 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH------------------PSTLLCLTHTKAAAA 76
            + A+AG+GKT  +    LRLLL +                       +L +T T+AA A
Sbjct: 27  LIEASAGTGKTFTIAGLYLRLLLGHGTTAPQGELTEATRHHEPLTVDQILVVTFTEAATA 86

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   I           S +       +         + LL           V TI
Sbjct: 87  ELRDRIRARIHDARIAFARGQSDDPVIAPLLQAIDDHTGAVKTLL-NAERQMDEAAVYTI 145

Query: 137 HAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           H FC+ ++ Q   E+     + F + DE     L  +           
Sbjct: 146 HGFCQRMLTQNAFESGSRFDNEF-VTDESH---LKAQVVADYWRKQFY 189


>gi|226952361|ref|ZP_03822825.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
 gi|294649622|ref|ZP_06727039.1| ATP-dependent DNA helicase [Acinetobacter haemolyticus ATCC 19194]
 gi|226836813|gb|EEH69196.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
 gi|292824499|gb|EFF83285.1| ATP-dependent DNA helicase [Acinetobacter haemolyticus ATCC 19194]
          Length = 679

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 40/190 (21%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           +   SQ   +QL A         V A AGSGKT ++ +++  L+         +  +T T
Sbjct: 1   MSSASQLNDKQLEAMKYVQGPLLVLAGAGSGKTSVITRKIAFLVQQCGIPAYRITAMTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV ++++                                      E   GL
Sbjct: 61  NKAAREMKERVGKLLSR-------------------------------------EEAKGL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H F   +++       + ++F+I D +  K+++ +  +        ++ E + KA
Sbjct: 84  SVSTFHTFGLNLLRLELKNLPLKANFSILDADDCKRILMDLMQRD-NMSGAESKELIAKA 142

Query: 192 FYEILEISND 201
             +I +  ND
Sbjct: 143 MKKISDWKND 152


>gi|166714219|ref|ZP_02245426.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 658

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 48/205 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +            V A AGSGKT ++V+++  L+    +P   +  +T T  +
Sbjct: 1   MFGLNPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I                                       +   GL + 
Sbjct: 61  AKEMGERVAKRIRG-------------------------------------DGADGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T HA     +Q     A +   F+I D + +   I++        +M     +  +    
Sbjct: 84  TFHALGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKD--------LMHGAKPDAIEDAKN 135

Query: 195 ILEISNDEDI--ETLISDIISNRTA 217
           ++  + +  +  E  ++   SNR  
Sbjct: 136 LISRAKNAGLSPEQAMAAARSNREK 160


>gi|255943109|ref|XP_002562323.1| Pc18g04920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587056|emb|CAP94716.1| Pc18g04920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 995

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 42/166 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
            +D ++  + E   A   + S   V A  GSGKT  L  RV  LL  +   P  ++C T 
Sbjct: 4   ILDGLNHAQRE---AVTSSGSILQVLAPPGSGKTKTLTARVAYLLSHHKYQPQDVICCTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  A+ EM  R+ ++I                                            
Sbjct: 61  TIKASREMRERLAKLIGEKLE-------------------------------------SR 83

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L + T H+ C   + ++     +   F IAD + ++ +I  + K  
Sbjct: 84  LILGTFHSICRRYLVKYGYLIGLRKGFGIADSDDTRAIIRRSIKRL 129


>gi|149925416|ref|ZP_01913680.1| UvrD/REP helicase [Limnobacter sp. MED105]
 gi|149825533|gb|EDM84741.1| UvrD/REP helicase [Limnobacter sp. MED105]
          Length = 666

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 38/158 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           +   K++    +       V A AGSGKT ++ Q++  L+         +  +T T  AA
Sbjct: 3   VGLNKAQSEAVNYVDGPCLVLAGAGSGKTRVITQKIAHLIQNKGVSAKNIAAVTFTNKAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R  +++                                           GL V T
Sbjct: 63  KEMEERAAKLLHG-------------------------------------NEGKGLLVCT 85

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            H+    I+++    A + + F+I D   +  L+++  
Sbjct: 86  FHSLGIRILREEHKHAGLKARFSILDATDTYGLVQQLY 123


>gi|116250378|ref|YP_766216.1| uvrD ATP-dependent helicase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255026|emb|CAK06100.1| putative uvrD ATP-dependent helicase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 685

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q +A +               V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 2   YLEKLNPQQRMAVEHGTLIDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T                    S  +   ++  + +I       +    A  L  +   
Sbjct: 62  LMTF-------------------SRRAAAEMARRVERICRDVLGSNAGVMADALSWS--- 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     +++ +  +  +   F I D E S  L+   +   
Sbjct: 100 -------GTFHGIGARLLRDYAEQIGLDPGFTIHDREDSADLMNLIRHDL 142


>gi|296436177|gb|ADH18351.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/9768]
 gi|296438037|gb|ADH20198.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/11074]
 gi|297140539|gb|ADH97297.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/9301]
          Length = 1026

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 9/194 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +   ++ A+AG+GKT  + Q VLR LL         +L +T T AA  E+  R+   +  
Sbjct: 14  SGKFFLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQ 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ- 146
              L  + LS   T +     +     K  ++ +   L T   + + TIH FC   ++Q 
Sbjct: 74  ALSLFSQALSHPGTPLPPYISSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQH 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIE 205
           FP    I    +I  E Q+   I++     L   + D      + AF      +  +   
Sbjct: 134 FPWIQPIQPS-SIFSEPQT---IQQHILDYLRKNLWDTVLSPKQYAFLSYHHRATTQQTR 189

Query: 206 TLISDIISNRTALK 219
            LI  ++ + T+  
Sbjct: 190 HLIERLLQDYTSTP 203


>gi|83310516|ref|YP_420780.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945357|dbj|BAE50221.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 649

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 38/155 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              ++L A     S  V A  G+GKT  LV R + LL   A P+ +   T T  AA E+ 
Sbjct: 26  DPEQRLAAEAEADSVLVLAGPGTGKTTTLVGRYVHLLEQGAAPARIFVSTFTARAAEELR 85

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +       D                               E    + + T+H  
Sbjct: 86  GRIGARLETRGGDFDA------------------------------ERFRRMPIGTLHGM 115

Query: 140 CEAIMQQFPLEANITSH---FAIADEEQSKKLIEE 171
              ++Q+ P           F + DE+   ++I  
Sbjct: 116 ALRLLQRHP-----PPGCPRFRVFDEQACSRVIAR 145


>gi|261401620|ref|ZP_05987745.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC
           23970]
 gi|269208325|gb|EEZ74780.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC
           23970]
          Length = 1204

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDNVLQVL 79

Query: 87  --TAWSHLSDEILSAEIT--------------KIQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I               ++  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 855

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ + +   ++  + ++AG+GKT  L  R+ +++  +      +LCLT T  A  EM
Sbjct: 7   NDKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGKIIAKDLALGEQILCLTFTNRACKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +++E +                                            + V+T H+
Sbjct: 67  KEKIIETVGKEGL--------------------------------------KVTVKTFHS 88

Query: 139 FCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172
           FC  ++++   +  +I+  F I DEE +K++I E 
Sbjct: 89  FCFDVIKKEAKKNTDISFDFTIYDEEDTKEIISEL 123


>gi|261365067|ref|ZP_05977950.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996]
 gi|288566486|gb|EFC88046.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996]
          Length = 1213

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 20/155 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +     RL+ L      ++L +T TKAA AE+  R+   +       
Sbjct: 22  LIEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLQAL 81

Query: 94  DEILSAE-------------------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + +   +                   IT +  +   +   ++    L   +       + 
Sbjct: 82  ESVEDTDNLSDDLAAYCRDNHPGDVFITGLLKQALAQESRARLIVRLKAAIGQFDNAAIY 141

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           TIH FC+ I++ +           + ++ + + LI
Sbjct: 142 TIHGFCQRILRDYAFLCRAPMDVELTEDNRDRLLI 176


>gi|169630596|ref|YP_001704245.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169242563|emb|CAM63591.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus]
          Length = 1078

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 29/167 (17%)

Query: 5   NSFQ--EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           N++   E S  + L   T  +  +   P     V A AG+GKT  +  RV+ L+    A 
Sbjct: 2   NAYSPAELSRVLGLFEPTDEQAAVIGAPPGPMVVIAGAGAGKTETMAARVVWLVANGYAT 61

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P  +L LT T+ AAA++  RV   +   +       S  +  +   +P+           
Sbjct: 62  PGQVLGLTFTRKAAAQLLRRVRSRLARLAG------SGILAPVAADEPDPV--------- 106

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                      + T HA+   ++++  L   +  +  +  E Q  +L
Sbjct: 107 -----------IATYHAYAGTLLREHGLLLPMEPNARLLTETQLWQL 142


>gi|15605371|ref|NP_220157.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis D/UW-3/CX]
 gi|237803068|ref|YP_002888262.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804989|ref|YP_002889143.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311463|ref|ZP_05354033.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 6276]
 gi|255317764|ref|ZP_05359010.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 6276s]
 gi|255349024|ref|ZP_05381031.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 70]
 gi|255503563|ref|ZP_05381953.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 70s]
 gi|8134452|sp|O84645|EX5B_CHLTR RecName: Full=Exodeoxyribonuclease V beta chain
 gi|3329087|gb|AAC68243.1| Exodeoxyribonuclease V, Beta [Chlamydia trachomatis D/UW-3/CX]
 gi|231273289|emb|CAX10204.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274302|emb|CAX11097.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296437105|gb|ADH19275.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/11222]
 gi|297748769|gb|ADI51315.1| Exodeoxyribonuclease V beta chain [Chlamydia trachomatis D-EC]
 gi|297749649|gb|ADI52327.1| Exodeoxyribonuclease V beta chain [Chlamydia trachomatis D-LC]
          Length = 1026

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 9/194 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +   ++ A+AG+GKT  + Q VLR LL         +L +T T AA  E+  R+   +  
Sbjct: 14  SGKFFLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQ 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ- 146
              L  + LS   T +     +     K  ++ +   L T   + + TIH FC   ++Q 
Sbjct: 74  ALSLFSQALSHPGTPLPPYISSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQH 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIE 205
           FP    I    +I  E Q+   I++     L   + D      + AF      +  +   
Sbjct: 134 FPWIQPIQPS-SIFSEPQT---IQQHILDYLRKNLWDTVLSPKQYAFLSYHHRATTQQTR 189

Query: 206 TLISDIISNRTALK 219
            LI  ++ + T+  
Sbjct: 190 HLIERLLQDYTSTP 203


>gi|58579865|ref|YP_198881.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84621878|ref|YP_449250.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58424459|gb|AAW73496.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365818|dbj|BAE66976.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 658

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 38/177 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           +      +            V A AGSGKT ++V+++  L+    +P   +  +T T  +
Sbjct: 1   MFGLNPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV + I                                       +   GL + 
Sbjct: 61  AKEMGERVAKRIRG-------------------------------------DGADGLTIC 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           T HA     +Q     A +   F+I D + +   I++         + D    + +A
Sbjct: 84  TFHALGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKDLMHGAKPDAIEDAKNLISRA 140


>gi|116515298|ref|YP_802927.1| ATP-dependent DNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257152|gb|ABJ90834.1| ATP-dependent DNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 648

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 43/210 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K ++           + A AGSGKT +++ +++ L+ +   +P  +  +T T  AA E+
Sbjct: 4   NKIQKKAIHLINNPCLILAGAGSGKTSVIINKIIVLIKIYGYNPKKIFAITFTNKAAKEI 63

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++  +T                                     ++    + + T H+
Sbjct: 64  KLRLVNQLT-------------------------------------MKQIKEISISTFHS 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I++       +  +F + DE++   L+    KS ++ +  + N    K     +  
Sbjct: 87  LGLKIIRNEYKFLGLIENFTLFDEKEQLLLL----KSFISDLDKNYNIFFLKQLLYQISF 142

Query: 199 SNDEDIETLISDI-ISNRTALKLIFFFFSY 227
             +  ++  ++ + IS+    K IFF+  Y
Sbjct: 143 WKNNLLDAKLARLKISSMLEEKCIFFYEKY 172


>gi|56459318|ref|YP_154599.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina
           loihiensis L2TR]
 gi|56178328|gb|AAV81050.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina
           loihiensis L2TR]
          Length = 669

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 38/160 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEM 78
              +            V A AGSGKT ++ +++  L+    +    +  +T T  AA EM
Sbjct: 3   NDRQNQAVHYIQGPLLVLAGAGSGKTRVITEKIAYLIRQQIYTARQIGAVTFTNKAAKEM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + +                                           GL V T H 
Sbjct: 63  KERIAQTLPKA-------------------------------------QLRGLTVCTFHT 85

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
               I+++          F++ D++ +  L+    +    
Sbjct: 86  LGLNIIRRELSTLGFKPGFSLFDDQDTYALLNALTEEVFE 125


>gi|308177921|ref|YP_003917327.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
 gi|307745384|emb|CBT76356.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 1105

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 40/196 (20%)

Query: 8   QEHSETI-DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           QE SE + +    T  +  + + P     V A AGSGKT  +  +V+ L+      P  +
Sbjct: 9   QELSEALGEQFPPTAQQAEIVAAPLEPMLVIAGAGSGKTKTMADKVVWLVANQLVRPEEI 68

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T+ AA E+S R+   I         +LSAE T+                      
Sbjct: 69  LGVTFTRKAAGELSIRIRAKIAQLVATG--LLSAEETRDFLDP----------------- 109

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE----EAKKSTLASIM 181
                  V T H++   ++Q   L   +        EE S  L      +   S L    
Sbjct: 110 ------SVSTYHSYANTLVQDHGLRLGL--------EEDSALLGAAQSWQVAHSVLEK-Y 154

Query: 182 LDNNEELKKAFYEILE 197
             + E L  A   +++
Sbjct: 155 TGSYEHLNSATSTLID 170


>gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 855

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ + +   ++  + ++AG+GKT  L  R+  ++  +      +LCLT T  A  EM
Sbjct: 7   NNKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGNIIAKDLALGEQILCLTFTNRACKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +++E +                                            + V+T H+
Sbjct: 67  KEKIIETVGKEGL--------------------------------------KVTVKTFHS 88

Query: 139 FCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172
           FC  ++++   +  +I+  F I DEE +K++I E 
Sbjct: 89  FCFDVIKKEAKKNTDISFDFTIYDEEDTKEIISEL 123


>gi|76789378|ref|YP_328464.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis A/HAR-13]
 gi|76167908|gb|AAX50916.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis A/HAR-13]
          Length = 1026

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 9/194 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +   ++ A+AG+GKT  + Q VLR LL         +L +T T AA  E+  R+   +  
Sbjct: 14  SGKFFLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQ 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ- 146
              L  + LS   T +     +     K  ++ +   L T   + + TIH FC   ++Q 
Sbjct: 74  ALSLFSQALSHPGTPLPPYISSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQH 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIE 205
           FP    I    +I  E Q+   I++     L   + D      + AF      +  +   
Sbjct: 134 FPWIQPIQPS-SIFSEPQT---IQQHILDYLRKNLWDTVLSPKQYAFLSYHHRATTQQTR 189

Query: 206 TLISDIISNRTALK 219
            LI  ++ + T+  
Sbjct: 190 HLIERLLQDYTSTP 203


>gi|269792359|ref|YP_003317263.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099994|gb|ACZ18981.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 653

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 41/137 (29%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
             +D ++  + E +   D   +  + A AGSGKT +L +++  L+      PS +L +T 
Sbjct: 8   NVLDGLNPKQVEAVTYCD--GNQLILAGAGSGKTRVLTRKIAYLISHKGVSPSKILAVTF 65

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  RV  ++                                        +  G
Sbjct: 66  TNKAAGEMRQRVERLLGG--------------------------------------SLHG 87

Query: 131 LKVQTIHAFCEAIMQQF 147
           +++ T H++    +++ 
Sbjct: 88  IRICTFHSYGLNFLRRN 104


>gi|255067628|ref|ZP_05319483.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256]
 gi|255048102|gb|EET43566.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256]
          Length = 1213

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 20/155 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +     RL+ L      ++L +T TKAA AE+  R+   +    H  
Sbjct: 22  LIEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLHAL 81

Query: 94  DEILSAE-------------------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + +   +                   +T +  +   +   ++    L   +       + 
Sbjct: 82  ESVEDTDNLSDDLEAYCRDNHPGDVFLTGLLKQALAQESRARLIVRLKAAIGQFDNAAIY 141

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           TIH FC+ I++ +    +      + ++ + + LI
Sbjct: 142 TIHGFCQRILRDYAFLCHAPMDVELTEDNRDRLLI 176


>gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
 gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
          Length = 855

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ + +   ++  + ++AG+GKT  L  R+ +++  +      +LCLT T  A  EM
Sbjct: 7   NDKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGKIIAKDLALGEQILCLTFTNRACKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +++E +                                            + V+T H+
Sbjct: 67  KEKIIETVGKEGL--------------------------------------KVTVKTFHS 88

Query: 139 FCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172
           FC  ++++   +  +I+  F I DEE +K++I E 
Sbjct: 89  FCFDVIKKEAKKNTDISFDFTIYDEEDTKEIISEL 123


>gi|145629400|ref|ZP_01785198.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21]
 gi|144978243|gb|EDJ88007.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21]
          Length = 662

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA++   D+       +      +  D+ +A H L    +      + TIH F
Sbjct: 79  TDAIDKLTAFAKTQDKSAFKN-DEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           C  ++ Q+   + I  HF +   +    L+             
Sbjct: 138 CRRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|86356226|ref|YP_468118.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
 gi|86280328|gb|ABC89391.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
          Length = 686

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q +A +               V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 2   YLEKLNPQQRMAVEHGTLTDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T                    S  +   ++  + +I            A  L  +   
Sbjct: 62  LMTF-------------------SRRAAAEMARRVERICRDVLGSKTGVMADALTWS--- 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     +++++  +  + + F I D E S  LI   +   
Sbjct: 100 -------GTFHGIGARLLREYAQQIGLDADFTIHDREDSADLINLIRHDL 142


>gi|296313861|ref|ZP_06863802.1| exodeoxyribonuclease V, beta subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839590|gb|EFH23528.1| exodeoxyribonuclease V, beta subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 1204

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIILEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D  LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDGALSDGIAAYCAEHHEGDTFLPALLEQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVKLTEEDGDRLLV 178


>gi|222444703|ref|ZP_03607218.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434268|gb|EEE41433.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii
           DSM 2375]
          Length = 994

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 46/215 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           ++++ + ++++  +  +   V A  GSGKT ++++RV  L+     +PS+LL +T T+ A
Sbjct: 1   MLNEDQ-QKVVEYNGNKPLLVEAGPGSGKTRVIIERVKFLINELKVNPSSLLVITFTRKA 59

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ E I                                            +++ 
Sbjct: 60  ANELKDRLSEDIPK-------------------------------------NIIDEMQIS 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL--ASIMLDNNEELKKAF 192
           TIH+FC   +++     N+       D  + ++L  +  K  L   +     + ++    
Sbjct: 83  TIHSFCLDFLKKRGNVTNLIDD----DSGEKRRLFIQKYKYKLGFKNEFYLADYQIPSVI 138

Query: 193 YEILEISNDE-DIETLISDIISNRTALKLIFFFFS 226
            +  E +  + DI+ LI  I   R   K    F +
Sbjct: 139 NKFDEYTTFKVDIDGLIDYIKQTRPIDKEYVDFVN 173


>gi|213403406|ref|XP_002172475.1| ATP-dependent DNA helicase srs2 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000522|gb|EEB06182.1| ATP-dependent DNA helicase srs2 [Schizosaccharomyces japonicus
           yFS275]
          Length = 819

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 40/163 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L +    ++  A  P +   + A  GSGKT +L  RV+ LL +   HP+ ++  T T  A
Sbjct: 7   LAALNPQQKQSAESPHKYTQILAGPGSGKTRVLAARVVHLLNVEQFHPNDIVIATFTNKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ +++                                            L   
Sbjct: 67  ANEIKQRIGKLVKD-------------------------------------NHANSLVSG 89

Query: 135 TIHAF-CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+     +++    +  +  ++ + D  ++  ++++  +  
Sbjct: 90  TFHSIAFHYLLR-HGKKVGLPKNWTVIDRTEATNIMKQLLERL 131


>gi|34557269|ref|NP_907084.1| ATP-dependent DNA helicase [Wolinella succinogenes DSM 1740]
 gi|34482985|emb|CAE09984.1| ATP-DEPENDENT DNA HELICASE EC 3.6.1 [Wolinella succinogenes]
          Length = 681

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 69/222 (31%), Gaps = 48/222 (21%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           +D ++  + E   A+    S  + A AGSGKT  +  R+  L+      PS  L LT T 
Sbjct: 6   LDDLNAAQRE--AATQIEGSLLILAGAGSGKTKTITTRLAYLIEEVGIPPSNTLTLTFTN 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAAEM  R L ++         +                                    
Sbjct: 64  KAAAEMRERALRLVQRRDMHPPLL------------------------------------ 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H F    ++          +F + D +  KK+++         ++      +K   
Sbjct: 88  -CTFHKFGLLFLKFHIQRLGRKPNFVLIDGDDRKKILKNINDDLPVGLVESEISRMKNWL 146

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                       E L+S    N   +  I+  +    + K +
Sbjct: 147 I--------MPDEALLSAQDKNYKLIASIYGKYEEFLKEKNM 180


>gi|317486423|ref|ZP_07945250.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316922333|gb|EFV43592.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 1075

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +++Q           V A  GSGKT  LV RV RLL        +L +T T+ AAAE+  
Sbjct: 491 EAQQKAIQAGPNPVLVLAGPGSGKTRTLVGRVQRLLKDGIPAQRILAVTFTRRAAAELRE 550

Query: 81  RVLEIITAWSHLSDEILSAEIT-----KIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           R+   +     L        +        +   P       AR +               
Sbjct: 551 RLERALGEGVPLPQADTLHALALSHWGTAEEALPAVLPEETARSVFAKANALSAA----- 605

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
             A      ++   E ++     +      +  ++E   +      L +  +L + +   
Sbjct: 606 -DA------RRAWDELSLARE-RLDTLTDEQSALQERYHAAKRERNLADYTDLLEHWLAR 657

Query: 196 LEISNDEDIETLISDIISNRTALKL 220
           L+   +     ++ D I + + L++
Sbjct: 658 LQAEPERQWTNVLVDEIQDLSPLQV 682


>gi|323525707|ref|YP_004227860.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1001]
 gi|323382709|gb|ADX54800.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1001]
          Length = 1235

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH--- 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   +        
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 86

Query: 92  LSDEILSAEITKIQGKKPNKS---DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           L D+     I ++           D   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 87  LDDDGGDPFIRRLFETTLAPERGIDREAALKVVRRALRTFDQAAIHTIHAFCQRALQE 144


>gi|190890273|ref|YP_001976815.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652]
 gi|190695552|gb|ACE89637.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 703

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q +A +               V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 2   YLEKLNPQQRMAVEHGTLTDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T                    S  +   ++  + +I       +    A  L  +   
Sbjct: 62  LMTF-------------------SRRAAAEMARRVERICRDVLGTNAGVMADALAWS--- 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     +++ +  +  + + F I D E S  LI   +   
Sbjct: 100 -------GTFHGIGARLLRDYAHQIGLDADFTIHDREDSADLINLIRHDL 142


>gi|319957110|ref|YP_004168373.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319419514|gb|ADV46624.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 685

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 52/164 (31%), Gaps = 40/164 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++  + E   A+       + A AGSGKT  L  R+  LL      P+  L LT T
Sbjct: 1   MLDELNDAQRE--AATHIDGPLLILAGAGSGKTKTLTTRLAYLLGEVGIDPANTLTLTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R L +I   +     +                                   
Sbjct: 59  NKAATEMRDRALRMIGDKAAYPPLL----------------------------------- 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              T H F    ++         + F I D +  K+LI    K 
Sbjct: 84  --CTFHKFGLIFLKFHIERLGRDNRFVIIDSDDKKRLIRSLAKD 125


>gi|302407938|ref|XP_003001804.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum VaMs.102]
 gi|261359525|gb|EEY21953.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum VaMs.102]
          Length = 999

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L S  K++    +    +  + A  GSGKTH L  RV+ LL     HP+ ++  T T  +
Sbjct: 15  LASLNKAQCRAVTSSAPTVAILAGPGSGKTHTLTSRVVWLLENAGYHPADIVVATFTVKS 74

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   +         +                                      
Sbjct: 75  AREMKERIGRALGDGREKKIVL-------------------------------------G 97

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+     +  +     ++  F IAD+  S+ +I+   K  
Sbjct: 98  TFHSIARRYLATYGQRIGLSQRFGIADDGDSRAVIQRICKRL 139


>gi|220933808|ref|YP_002512707.1| ATP-dependent DNA helicase Rep [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995118|gb|ACL71720.1| ATP-dependent DNA helicase Rep [Thioalkalivibrio sp. HL-EbGR7]
          Length = 671

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 38/154 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++           V A AGSGKT ++  ++  L+      P  +  +T T  AA EM
Sbjct: 10  NPQQRAAVEHVDGPLLVLAGAGSGKTGVITHKIAHLIRDRGMDPKRIAAITFTNKAAKEM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R   ++                                       +   GL V T H 
Sbjct: 70  KARASRLLER-------------------------------------DESKGLTVSTFHT 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
                +++        + F+I D   S  L++E 
Sbjct: 93  LGLNFIRRELKGLGYKAGFSIFDAADSLSLLKEL 126


>gi|295394601|ref|ZP_06804820.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972494|gb|EFG48350.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 1103

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 29/169 (17%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S ++ +E +DL   T  +  +           A AGSGKT ++ QRVL L+      P  
Sbjct: 4   SAKQIAERLDLPEPTDEQCAIIEADLTPGITIAGAGSGKTTVVSQRVLYLVANGLVEPQQ 63

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++ LT T  AA EMS ++      +           IT    + P               
Sbjct: 64  IIGLTFTNKAAGEMSDKISSHFATFRK------KEGITSPSTEMP--------------- 102

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                   +QT ++F   ++ ++     +     + D+  + +L ++  
Sbjct: 103 -------TIQTYNSFASGLVSEYGATIGVEPDTQVLDDASAIELADQIV 144


>gi|253582808|ref|ZP_04860028.1| UvrD/REP helicase [Fusobacterium varium ATCC 27725]
 gi|251835384|gb|EES63925.1| UvrD/REP helicase [Fusobacterium varium ATCC 27725]
          Length = 617

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 40/169 (23%)

Query: 8   QEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
              S  I+   +   EQL A +       V A AGSGKT  +V R   ++        +L
Sbjct: 21  LNESYKINYCKELNEEQLRALTSLEGQYLVIAGAGSGKTRTIVYRTAFMIERGIPEKKIL 80

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT TK AA EM  R+  + +                                       
Sbjct: 81  MLTFTKKAALEMEERIKNLTSEKEI----------------------------------- 105

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               + V T H+ C  ++ ++     I   F+I DE +S  +I    + 
Sbjct: 106 ---KVSVSTFHSLCAELLIKYKNIFGIE-KFSIIDENESNAVISLLIRE 150


>gi|170696477|ref|ZP_02887603.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M]
 gi|170138630|gb|EDT06832.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M]
          Length = 1233

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH--- 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   +        
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 86

Query: 92  LSDEILSAEITKIQGKKPNKS---DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           L D+     I ++           D   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 87  LDDDGGDPFIRRLFETTLAPERGIDRETALKVVRRALRTFDQAAIHTIHAFCQRALQE 144


>gi|257093991|ref|YP_003167632.1| exodeoxyribonuclease V subunit beta [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046515|gb|ACV35703.1| exodeoxyribonuclease V, beta subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1239

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 12/188 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI-------I 86
            + A+AG+GKT  L    LRLLL        +L +T T AA AE+  R+          +
Sbjct: 27  LIEASAGTGKTWNLCGLYLRLLLEKGLDAPQILVVTFTNAATAELRERIRSRIVDVLAYL 86

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              +  +D  ++  +  ++       D  + R  L   L T     V TIH FC+  + +
Sbjct: 87  QRGASAADPFVTRLVAAVENN--ASVDRPQMRMRLEAALHTFDEAAVFTIHGFCQRALSE 144

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
            P  A +     +  ++Q  +L  EA        +         A Y      + E    
Sbjct: 145 TPFAAGLPFSLDLLHDDQPLRL--EAVSDFWRRHIASGAISPALADYLAQRQDSPEGWAR 202

Query: 207 LISDIISN 214
           L+   ++ 
Sbjct: 203 LLGRQVAK 210


>gi|329904285|ref|ZP_08273751.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548042|gb|EGF32776.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 631

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 49/205 (23%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +++ +KS++ +  ++  +   V A AGSGKT +L +RV R L+ N     ++ LT T  A
Sbjct: 1   MLNLSKSQEAVVHAEIGQPMQVLAAAGSGKTRVLTERV-RYLIENTRKDGVIALTFTNKA 59

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R                                       L  + E      V 
Sbjct: 60  AEEMQTR---------------------------------------LADLDELDERCWVA 80

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIHA  + I+ ++     + S   I + +Q +       K+     + +NN ++   F  
Sbjct: 81  TIHAVAQRILDKYGHTIGLPSELHIYERDQDR-------KTVFLQSLRENNVDIDD-FLN 132

Query: 195 ILEISNDEDIETLISDIISNRTALK 219
           + +    +D E +I + +   + +K
Sbjct: 133 VGDEKTRKDRERIIQNYLEQFSVVK 157


>gi|255319912|ref|ZP_05361113.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82]
 gi|262379193|ref|ZP_06072349.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens SH164]
 gi|255303045|gb|EET82261.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82]
 gi|262298650|gb|EEY86563.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens SH164]
          Length = 679

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 76/194 (39%), Gaps = 48/194 (24%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71
           +   SQ  ++QL A         V A AGSGKT ++ +++  L+     P   +  +T T
Sbjct: 1   MSSASQLNNKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLIQQCRIPAHRITAMTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  RV ++++                                      E   GL
Sbjct: 61  NKAAREMKERVGKLLSR-------------------------------------EEIKGL 83

Query: 132 KVQTIHAFCEAIMQQFPLEANITS---HFAIADEEQSKKLIEEAK-KSTLASIMLDNNEE 187
            V T H F   +++   LE   T    +F+I D +  K+++ +   +  L+    ++ E 
Sbjct: 84  SVSTFHTFGLNMLR---LELKNTPLKNNFSILDADDCKRILMDLMHRDNLS--GAESKEL 138

Query: 188 LKKAFYEILEISND 201
           + KA  +I +  ND
Sbjct: 139 IAKAMKKISDWKND 152


>gi|225387724|ref|ZP_03757488.1| hypothetical protein CLOSTASPAR_01494 [Clostridium asparagiforme
           DSM 15981]
 gi|225046187|gb|EEG56433.1| hypothetical protein CLOSTASPAR_01494 [Clostridium asparagiforme
           DSM 15981]
          Length = 1126

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 43/160 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +     + L      R+  V A  G+GKT  LV+R+  LL       S +  +T T  AA
Sbjct: 512 LVLNPEQTLAVRSAGRAVAVIAGPGTGKTRTLVERISYLLETRRVKQSQITAVTFTNKAA 571

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ E +     +                                      L++ T
Sbjct: 572 EEMRIRLEEKMGGKQAVK------------------------------------KLQIGT 595

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            H+ C  ++++  LE      F +ADE +  ++  EA ++
Sbjct: 596 FHSICFDLLRKQGLE------FLMADESEMLEIAREAIRA 629


>gi|313106720|ref|ZP_07792937.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 39016]
 gi|310879439|gb|EFQ38033.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 39016]
          Length = 658

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 38/145 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++ +++  L+         ++ +T T  AA EM  RV  ++   
Sbjct: 5   GGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREMKERVGTLLRGG 64

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                                   GL V T H     I+++   
Sbjct: 65  EGK-------------------------------------GLTVSTFHNLGLNIIRKEHE 87

Query: 150 EANITSHFAIADEEQSKKLIEEAKK 174
                  F+I DE   K L+ +  +
Sbjct: 88  RLGYKPGFSIFDESDIKALLTDIMQ 112


>gi|172060153|ref|YP_001807805.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria MC40-6]
 gi|171992670|gb|ACB63589.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria
           MC40-6]
          Length = 1234

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVARLLETTLGDAGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|15617184|ref|NP_240397.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681934|ref|YP_002468320.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682489|ref|YP_002468873.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471646|ref|ZP_05635645.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11134339|sp|P57654|REP_BUCAI RecName: Full=ATP-dependent DNA helicase rep
 gi|25290762|pir||C84999 ATP-dependent DNA helicase Rep [imported] - Buchnera sp.  (strain
           APS)
 gi|10039249|dbj|BAB13283.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622222|gb|ACL30378.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624777|gb|ACL30932.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086318|gb|ADP66400.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086892|gb|ADP66973.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087963|gb|ADP68042.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 645

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 43/207 (20%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
           S++           + A AGSGKT +++ +++ L+      P  +  +T T  AA EM  
Sbjct: 6   SQKNAVELTNGPCLILAGAGSGKTKVIINKIIYLINHCQYEPDNIAAVTFTNKAAYEMRI 65

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ + +             EI KI                            + T H+  
Sbjct: 66  RLSKYLNI----------PEIKKII---------------------------ISTFHSLG 88

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             I+++      + ++F + DE+    L+++  K  +      NN +L K    ++    
Sbjct: 89  LEIIKKEIDALELNNNFTLLDEKDQILLLKKICKKEIK-----NNIQLLKKLNFMISYWK 143

Query: 201 DEDIETLISDIISNRTALKLIFFFFSY 227
           ++ +  L   +++  +  K   + +  
Sbjct: 144 NKFLTPLQVQLLAKSSQEKDFAYVYEQ 170


>gi|218463215|ref|ZP_03503306.1| ATP-dependent DNA helicase protein [Rhizobium etli Kim 5]
          Length = 371

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q +A +               V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 2   YLEKLNPQQRMAVEHGTLTDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T +                          +A     + ++  +  +     ++   L 
Sbjct: 62  LMTFS------------------------RRAAAEMARRVERICRDVLGSKAGVMTDALH 97

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G     T H     +++++  +  + + F I D E S  L+   +   
Sbjct: 98  WSG-----TFHGIGARLLREYAQQIGLDADFTIHDREDSADLMNLIRHDL 142


>gi|241661828|ref|YP_002980188.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240863855|gb|ACS61516.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 970

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 44/233 (18%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           E +  ++    T+ +     D   +    A AGSGK+  L  R+ RL+     P+T++ +
Sbjct: 6   EINSLVESEGLTRPQASAVVDDASAILCIACAGSGKSQTLAYRIARLMHQGVPPNTIVAI 65

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AA  +  R+ +++                                          
Sbjct: 66  TFTEKAADSIKRRIADVLVRTGQSP--------------------------------NLI 93

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK----LIEEAKKSTLASIMLDN 184
           G + + TIHAFC+ ++      A+  + F   D     +    LI       ++ +    
Sbjct: 94  GQMFIGTIHAFCQNVL------ADADAIFRQYDVLDGNRFMLYLISRYYDLGISDLRPRF 147

Query: 185 NEELKKAFYEILEISNDEDIETL-ISDIISNRTAL-KLIFFFFSYLWRRKIIE 235
            +   +    +    N    E L I++I ++   L K +      L R + I+
Sbjct: 148 KDRYFETLENVRNAWNIYRDEGLSIAEIDASDAQLGKTLRSIQDGLARDQFID 200


>gi|325661838|ref|ZP_08150459.1| hypothetical protein HMPREF0490_01195 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471816|gb|EGC75033.1| hypothetical protein HMPREF0490_01195 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 946

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 31/173 (17%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKAAAAEMSHRV 82
           + P ++  V A AG+GKT+ +V RV  L     +        L  +T T  AA  M  R+
Sbjct: 236 ASPEKNTLVEAGAGTGKTYSMVSRVAYLCNKRRNNISCIEDELAMITFTNDAAINMKKRL 295

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            ++   +  L+                        +   +  +E      + TIH F   
Sbjct: 296 KQMFVNYYILTG-----------------------KECYLQYVEGVDRANISTIHKFSLE 332

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +++       + + F I  +E  +    +     L+  + +  EE      EI
Sbjct: 333 LLRSASFYTGLGTTFRILSDEYGRA---KIYDLYLSKFLEEKEEENSNFISEI 382


>gi|240142082|ref|YP_002966592.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
           AM1]
 gi|240012026|gb|ACS43251.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
           AM1]
          Length = 666

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 50/206 (24%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           H+  +  ++  +   +LAS+P     V A AGSGKT  L +R+ RL+L    P  +L +T
Sbjct: 15  HARILSGLNDQQQAVVLASEPD--VAVVAGAGSGKTETLTRRIARLVLDGVDPERILAIT 72

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            TK AA  M  R                                           +    
Sbjct: 73  FTKQAAQNMRDR---------------------------------------AARYVPDAR 93

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            +++ T H+   A++ +      +    +I D E +   +++      A+ +  N E L 
Sbjct: 94  RIRLGTFHSVAHALVMENRHAMRLPDKISILDTEDAVASLKKV-----AAALRTNEENLP 148

Query: 190 KA--FYEILEISNDEDIETLISDIIS 213
           +A    +IL  S   + E  I D++ 
Sbjct: 149 RASTINKILSFS--RNTERTIEDVVH 172


>gi|118575660|ref|YP_875403.1| superfamily I helicase [Cenarchaeum symbiosum A]
 gi|118194181|gb|ABK77099.1| superfamily I helicase [Cenarchaeum symbiosum A]
          Length = 977

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 41/136 (30%)

Query: 19  QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
               EQ  A + +     V A  GSGKT ++V+RVL ++   A P  +LCLT ++ AA E
Sbjct: 2   DLDPEQRRAVEYSGPALLVRAGPGSGKTRVIVERVLHMVRNGADPGRILCLTFSEKAAGE 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ E I                                            + V T H
Sbjct: 62  MLGRLKESIDTT----------------------------------------EMDVCTFH 81

Query: 138 AFCEAIMQQFPLEANI 153
           +F + I++    E+ I
Sbjct: 82  SFAKQILEDNEPESGI 97


>gi|303326279|ref|ZP_07356722.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
 gi|302864195|gb|EFL87126.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
          Length = 766

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 70/213 (32%), Gaps = 45/213 (21%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID        Q   A+       V A AGSGKT  +V R+  L      P+++L LT T
Sbjct: 1   MIDYAQALNEAQYAAATSGDGPVLVVAGAGSGKTRTIVYRLAWLAEHGVAPTSILLLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM                                   + +A  LL   L    G+
Sbjct: 61  RKAAQEM-----------------------------------LQRAGMLLDQGL---SGV 82

Query: 132 KVQTIHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +  T HAF   ++++  P        F + D       I  A K     + L   +    
Sbjct: 83  QGGTFHAFAYGVLRRWRPAWLGERP-FTVMDSAD----ITAAVKYCKDELKLGRGDRSFP 137

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFF 223
               I+ + +    + L  + +  R A  L+  
Sbjct: 138 KTQSIVGLLSKARNKELSLEEVLRREAFHLLPH 170


>gi|332036801|gb|EGI73263.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 672

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 40/157 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  + E +     +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 3   LNPKQDEAVKYI--SGPCLVLAGAGSGKTRVITNKIAYLVKKCEYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RVL+ +                                       +   GL V T
Sbjct: 61  KEMRERVLQTLGK-------------------------------------QDAKGLWVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            H     I+++          F++ D++ + +L+ E 
Sbjct: 84  FHTLGLEIIKKELSTLGFKPGFSLFDDQDTNQLLSEL 120


>gi|325127936|gb|EGC50839.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis N1568]
          Length = 1010

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 24/159 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86
            + A+AG+GKT+ +     RL+ L   +   +L +T TKAA AE+  R+   +       
Sbjct: 20  LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79

Query: 87  --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130
                + L D+ LS  I                +  +   K   ++    L   +     
Sbjct: 80  ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
             + TIH FC+ I++ +           + +E+  + L+
Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178


>gi|311087482|gb|ADP67562.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 645

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 43/207 (20%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
           S++           + A AGSGKT +++ +++ L+      P  +  +T T  AA EM  
Sbjct: 6   SQKNAVELTNGPCLILAGAGSGKTKVIINKIIYLINHCQYEPDNIAAVTFTNKAAYEMRI 65

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ + +             EI KI                            + T H+  
Sbjct: 66  RLSKYLNI----------PEIKKII---------------------------ISTFHSLG 88

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             I+++      + ++F + DE+    L+++  K  +      NN +L K    ++    
Sbjct: 89  LEIIKKEIDALELNNNFTLLDEKDQILLLKKICKKEIK-----NNIQLLKKLNFMISYWK 143

Query: 201 DEDIETLISDIISNRTALKLIFFFFSY 227
           ++ +  L   +++  +  K   + +  
Sbjct: 144 NKFLTPLQVQLLAKSSQEKDFAYVYEQ 170


>gi|296158754|ref|ZP_06841583.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1]
 gi|295890959|gb|EFG70748.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1]
          Length = 1230

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   +       +
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +     + +         +   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 88  MDDDGGDPFVRRLFETTLAPERGIEREAALKMVRRALRTFDQAAIHTIHAFCQRALQE 145


>gi|114776450|ref|ZP_01451495.1| ATP-dependent DNA helicase Rep [Mariprofundus ferrooxydans PV-1]
 gi|114553280|gb|EAU55678.1| ATP-dependent DNA helicase Rep [Mariprofundus ferrooxydans PV-1]
          Length = 652

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 60/209 (28%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            +++            V A AGSGKT ++ +R+  L+  +     +  +T T  AA EM 
Sbjct: 10  NEAQYQAVYYRNGPLLVLAGAGSGKTRVITERIAALVERDVPDHAITAVTFTNKAAKEMR 69

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +                                       +   GL++ T HA 
Sbjct: 70  ERLQQRLG--------------------------------------DKANGLRICTFHAL 91

Query: 140 CEAIMQQFPLEANITSHFAI--------------------ADEEQSKKLIEEA--KKSTL 177
             A++++        ++ ++                    AD +Q  +++      KS L
Sbjct: 92  GLAMVREHADLVGRKANVSVFAGAEQKTVMRSVLSEMKLAADADQVDRMLSRVSSLKSGL 151

Query: 178 ASIMLDNNEELKKAFYEILEISNDEDIET 206
             +  +    +++ +  +LE  N  D + 
Sbjct: 152 LEVHENQLAAIRETYDALLEKMNAVDFDD 180


>gi|319944948|ref|ZP_08019210.1| ATP-dependent helicase PcrA [Lautropia mirabilis ATCC 51599]
 gi|319741518|gb|EFV93943.1| ATP-dependent helicase PcrA [Lautropia mirabilis ATCC 51599]
          Length = 677

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 37/167 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +     ++          + V A AGSGKT ++  ++L L+ A      +  +T T  AA
Sbjct: 1   MAELNPAQAQAVKHLDGPSLVIAGAGSGKTRVITAKLLHLIDAGFTGRAIAAITFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM+ R                                 ++ R L  +         + T
Sbjct: 61  AEMAER--------------------------------FAQQRKLPAS-----ERPTIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            H+    +++       +   F+I D +    L+ +  ++T   ++ 
Sbjct: 84  FHSLGMKMLRTSGRGIGLKPSFSIFDSDDCAGLLAQLLQTTDRKLIR 130


>gi|295676242|ref|YP_003604766.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002]
 gi|295436085|gb|ADG15255.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002]
          Length = 1243

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   +       +
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87

Query: 95  EILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
               A       + +      N  +   A  ++   L T     + TIHAFC+  +Q+
Sbjct: 88  MDDDAGDPFIRRLFETTLAPDNGIEREAALKVVRRALRTFDQAAIHTIHAFCQRALQE 145


>gi|145638900|ref|ZP_01794508.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittII]
 gi|145271872|gb|EDK11781.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittII]
 gi|309750876|gb|ADO80860.1| Exodeoxyribonuclease V, beta subunit [Haemophilus influenzae R2866]
          Length = 1211

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA++   D+       +      +  D+ +A H L    +      + TIH F
Sbjct: 79  TDAIDKLTAFAKTQDKSAFKN-DEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           C  ++ Q+   + I  HF +   +    L+             
Sbjct: 138 CRRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|295105936|emb|CBL03479.1| Superfamily I DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 732

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             +++   +       V A AG+GKT  L +R   L+      P  +LC T T  AA EM
Sbjct: 23  NAAQREAVTTTEGYVRVIAGAGTGKTRALTERFAYLVNELGIMPGNVLCATFTNKAAGEM 82

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +                                               + T H 
Sbjct: 83  RRRIRRLTGDNDTGY---------------------------------------INTFHG 103

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           FC +++Q+          F + D      +++   + 
Sbjct: 104 FCVSVLQEDAHALQYPKSFLVLDNADIDAMLQVVYEE 140


>gi|170782260|ref|YP_001710593.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156829|emb|CAQ01996.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 1086

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 58/169 (34%), Gaps = 27/169 (15%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S Q  +ET+ L S T+ ++ +   P     V A AGSGKT  +  RV+ LL         
Sbjct: 16  SAQRIAETLGLPSPTEQQRRVIESPLEPGLVVAGAGSGKTETMASRVVWLLANGHVGVEE 75

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA E+  R+   I          + A                         
Sbjct: 76  ILGLTFTRKAAGELGVRIRARIEQLQQAGLAAVPA------------------------- 110

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            +      VQT +AF   I +         +   +  E  + +L     
Sbjct: 111 -DAFATPTVQTYNAFANGIFRDSATLIGREAESVVLTEASAWQLARRLV 158


>gi|301170069|emb|CBW29673.1| exonuclease V (RecBCD complex), beta subunit [Haemophilus
           influenzae 10810]
          Length = 1211

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA++   D+       +      +  D+ +A H L    +      + TIH F
Sbjct: 79  TDAINKLTAFAKTQDKSAFKN-DEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           C  ++ Q+   + I  HF +   +    L+             
Sbjct: 138 CRRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|262202649|ref|YP_003273857.1| exodeoxyribonuclease V [Gordonia bronchialis DSM 43247]
 gi|262085996|gb|ACY21964.1| Exodeoxyribonuclease V [Gordonia bronchialis DSM 43247]
          Length = 1134

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 7/156 (4%)

Query: 26  LASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE----MSH 80
           +A D P ++  + A+AG+GKT+ +V    R L      S +L +T ++AA AE    M  
Sbjct: 13  IAEDLPAQTTVLEASAGTGKTYAIVSLAARYLAEGVPISGMLLVTFSRAATAELRERMRE 72

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV  ++   +  +    SA+            D+++ R  L+  L       + T H FC
Sbjct: 73  RVHGLVGVLADPASAAQSADQLHRLLAAGTAEDVARRRAHLVRALSDFDASTIATTHTFC 132

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             +++           + I +E    +L +E     
Sbjct: 133 NRMLEALGFLGEREMVYRIVEEVD--ELTDEVALDL 166


>gi|149922812|ref|ZP_01911236.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149816355|gb|EDM75857.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 1336

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 9/188 (4%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             DP RS  + A AG+GKT  LV+R LR++   A P  ++ +T T+AAAAEM  RV   +
Sbjct: 6   IYDPGRSVVLVAAAGTGKTWRLVRRYLRIVSRFADPEEIVAVTFTRAAAAEMRARVFAAL 65

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           T     S E        I+G    +          + + E      + T+H+ C  ++ +
Sbjct: 66  TQTRAPSPEDDPVLAELIEGCSLGER---------LGLTERVAAAPIGTLHSLCARLLAE 116

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           FP  + +       +  + +  ++   +  + + + +      +   E+L       + +
Sbjct: 117 FPELSGVPPDARPLEPAEQELELDAFVRGWIDAAIDELRHPAHERCAELLASHPVAFVRS 176

Query: 207 LISDIISN 214
            +  ++ +
Sbjct: 177 ELRAMLGD 184


>gi|171318888|ref|ZP_02908022.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5]
 gi|171095918|gb|EDT40856.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5]
          Length = 1234

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVARLLETTLGDAGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|119470385|ref|ZP_01613113.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Alteromonadales bacterium TW-7]
 gi|119446310|gb|EAW27586.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Alteromonadales bacterium TW-7]
          Length = 672

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 40/157 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  + E +     +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 3   LNPKQDEAVKYI--SGPCLVLAGAGSGKTRVITNKIAYLVQKCEYKARNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RVL+ +                                       +   GL V T
Sbjct: 61  KEMRERVLQTLGK-------------------------------------QEAKGLWVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            H     I+++          F++ D++ + +L+ E 
Sbjct: 84  FHTLGLEIIKKEITTLGFKPGFSLFDDQDTNQLLSEL 120


>gi|188583340|ref|YP_001926785.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179346838|gb|ACB82250.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 1143

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 42/184 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +    S+    +       + A  G+GKT  LV+R+  L+     P+ +L LT +  AAA
Sbjct: 193 MRPDPSQDAAVAHRGGPYLLQAGPGTGKTRTLVRRIESLVDEGIDPNGILVLTFSNKAAA 252

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R                                      L ++  E    +   T 
Sbjct: 253 ELMDR--------------------------------------LALSRPEAAASVWTGTF 274

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           HAF   ++++F      ++   + D+  +  ++E      LAS+ L +  +L     ++ 
Sbjct: 275 HAFGLDVIRRFHERLGRSASPKLVDKPTAITMLE----GVLASLPLAHYRDLWDPVQDLS 330

Query: 197 EISN 200
            I +
Sbjct: 331 NILS 334


>gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium
           sticklandii DSM 519]
 gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium
           sticklandii]
          Length = 828

 Score = 98.0 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 39/159 (24%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            I +   EQ  A D       V A AG+GKT ++  R     ++   P  +L LT T  A
Sbjct: 6   YIERLNKEQKTAYDKVFGPLIVMAPAGTGKTDVIALRAYNAYISGVKPEDMLLLTFTNRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A  M  R+  +I   +                                        +++ 
Sbjct: 66  AKSMKKRLEIVIGDIA--------------------------------------NKIRIS 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H  C  I++Q  +   ++  F + DE+ S+++I +  
Sbjct: 88  TFHGLCGFILRQEAVNLFLSPDFIVIDEDDSRQIIRDII 126


>gi|196228890|ref|ZP_03127756.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196227171|gb|EDY21675.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 1048

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTH 70
           ++             +  R+  V A+AGSGKT  +  R++ L           +L+ +T+
Sbjct: 1   MNTPHDQSQRDRFIHELERNFSVVASAGSGKTRAITDRIVALAQHPRAAEWLPSLVVVTY 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM  R  + I                                   + ++     
Sbjct: 61  TNRAAAEMQQRARQSILEAGVK-----------------------------LEVINAFNR 91

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
               TIH+ C  +++Q      + +     +E+    L  E  +S+  +I    + E ++
Sbjct: 92  AFFGTIHSLCLKLLRQHGHYLGLPAQLEHLNEDDDAALWTEFVQSS-TAIGAGLDPEQRR 150

Query: 191 AFYEILEISNDEDI 204
           A   +       D+
Sbjct: 151 ALLRLTPARRLLDL 164


>gi|270284798|ref|ZP_06194192.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
           Nigg]
 gi|270288828|ref|ZP_06195130.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
           Weiss]
 gi|301336178|ref|ZP_07224380.1| exodeoxyribonuclease V beta chain [Chlamydia muridarum MopnTet14]
          Length = 1026

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 9/194 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +   ++ A+AG+GKT  + Q +LR LL         +L +T T AA  E+  R+ E +  
Sbjct: 14  SGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQESLKQ 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ- 146
              L  + LS   T +     ++    K  ++ +   L T   + + TIH FC   ++Q 
Sbjct: 74  ALTLFSQALSHPETPLPPYVSSQETKVKQLYIKIRNSLATLDEMNIFTIHGFCRFTLEQH 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIE 205
           FP    I    ++  E Q+   I++     L     +N     + AF      +  +   
Sbjct: 134 FPWVQPIHPS-SMFSEPQT---IQQYILDYLRQNSWENVLSPKQYAFLSYHHRATTQQTR 189

Query: 206 TLISDIISNRTALK 219
            L   ++ +  +  
Sbjct: 190 HLADRLLQDYASTP 203


>gi|189425128|ref|YP_001952305.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189421387|gb|ACD95785.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 665

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 40/162 (24%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +SQ   EQ +A         V A AGSGKT ++  R++ LL         +L +T T  A
Sbjct: 1   MSQLNPEQFIAVHHTEGPLLVLAGAGSGKTQVITSRIVHLLGTLKVPADQILAVTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  RV     A S                                       G+ + 
Sbjct: 61  AKEMQERVKRAAGAKSE--------------------------------------GMLIS 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+    I+++         +F I  +     ++ +A    
Sbjct: 83  TFHSLGVRILRRDIRRLGYKPNFTIYSDSDQSGVVRQALSDL 124


>gi|68249990|ref|YP_249102.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 86-028NP]
 gi|68058189|gb|AAX88442.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 86-028NP]
          Length = 1211

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E I
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 87  TAWSHL------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           T   +       + +  + +  +      +  D+ +A H L    +      + TIH FC
Sbjct: 79  TDAINKLTAFAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTIHGFC 138

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             ++ Q+   + I  HF +   +    L+             
Sbjct: 139 RRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|319897107|ref|YP_004135302.1| exodeoxyribonuclease v beta chain [Haemophilus influenzae F3031]
 gi|317432611|emb|CBY80972.1| Exodeoxyribonuclease V beta chain [Haemophilus influenzae F3031]
          Length = 1201

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E I
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 87  TAWSHL------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           T   +       + +  + +  +      +  D+ +A H L    +      + TIH FC
Sbjct: 79  TDAINKLTAFAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTIHGFC 138

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             ++ Q+   + I  HF +   +    L+             
Sbjct: 139 RRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|254252756|ref|ZP_04946074.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia
           dolosa AUO158]
 gi|124895365|gb|EAY69245.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia
           dolosa AUO158]
          Length = 1238

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +    +    D S A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVARLLETTLGEHGALDASTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|150866726|ref|XP_001386414.2| protein required for proper timing of committment to meiotic
           recombination and the transition from Meiosis I to
           Meiosis II [Scheffersomyces stipitis CBS 6054]
 gi|149387982|gb|ABN68385.2| protein required for proper timing of committment to meiotic
           recombination and the transition from Meiosis I to
           Meiosis II [Scheffersomyces stipitis CBS 6054]
          Length = 908

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 40/177 (22%)

Query: 17  ISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
           +++    Q LA     +    + A  G+GKT +L  RV  LLL     P  ++  T TK 
Sbjct: 14  VAELNENQRLAVTAPANGRLQIIAGPGTGKTKVLTSRVAFLLLKEEIPPHQIVVTTFTKK 73

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E++ R+  ++   +    +IL                                   V
Sbjct: 74  AANELTERLESLLGDTTIDVSKIL-----------------------------------V 98

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            T H+ C  ++  +  +  I   + IAD+  +  +++E   + L+ + LD  + L  
Sbjct: 99  GTFHSICYRVLMMYGKKLGIE-RYNIADDRDADHILKE-MLAGLSDLELDTLDSLPD 153


>gi|229847480|ref|ZP_04467577.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 7P49H1]
 gi|229809621|gb|EEP45348.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 7P49H1]
          Length = 1211

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEM----SHRV 82
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+      R+
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 83  LEIITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            + I      ++    +     +      +  D+ +A H L    +      + TIH FC
Sbjct: 79  TDAIDKLIAFAETQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTIHGFC 138

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             ++ Q+   + I  HF +   +    L+             
Sbjct: 139 RRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|325673659|ref|ZP_08153350.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707]
 gi|325555680|gb|EGD25351.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707]
          Length = 1106

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 7/156 (4%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           A  P  +  + A+AG+GKT+ +V    R +       S LL +T ++AA  E+  R  E 
Sbjct: 16  APLPQGTTVLEASAGTGKTYAIVGLAARFVAEEGIDLSQLLLVTFSRAATKELRERTRER 75

Query: 86  ITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
             + +    +  +A ++K          + +++++ R  L+  L       + T H+FC+
Sbjct: 76  FASAAAGLADPAAARVSKDPLVAHLADTDDAEIARRRRRLMQALSDFDAGTIVTTHSFCQ 135

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
            ++    +  +      + +E +   L+ E      
Sbjct: 136 RMLDGLGIAGDRDPDAVLVEEAE--DLVSEVIADLF 169


>gi|332177512|gb|AEE13202.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707]
          Length = 1123

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 16/184 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           A+AG+GKTH + +  LR +L     S   +  +T T  A  E+  R  + +   +    E
Sbjct: 13  ASAGAGKTHTMTEAFLRHVLEKPRSSYQEVQAVTFTNLATRELKERFFKELYTLATKPQE 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               +    +G   +    +KAR  L +IL   GGL+V+TI +F + I+    +E     
Sbjct: 73  SPFYDSFNKEGYS-DAQLSTKARTALQSILFDYGGLRVKTIDSFFQDIIHALAIELKQRP 131

Query: 156 HFAIADEEQS------KKLIE-------EAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
              I            ++L E       +A KS L +    +   L+K+     +   +E
Sbjct: 132 SMRIELSTDQILSLAVERLFEQPSPIAQQAIKSFLVNRKEKSIYALRKSLKLFAKQLYNE 191

Query: 203 DIET 206
            I+ 
Sbjct: 192 QIQE 195


>gi|255020927|ref|ZP_05292983.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC
           51756]
 gi|254969718|gb|EET27224.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC
           51756]
          Length = 663

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 38/155 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++   +       V A AGSGKT ++ ++++ L+      P  +  +T T  AA EM  R
Sbjct: 12  QREAVARVHGPVLVLAGAGSGKTRVITRKIVHLIQDHGVEPRHIAAVTFTNKAAREMKGR 71

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + +                                        +  GL + T H    
Sbjct: 72  VQQSLEG-------------------------------------RSARGLTISTFHRLGL 94

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            I++Q   +     +F++ D   S  L+    +  
Sbjct: 95  EILRQDITQLGYRENFSVVDPGDSLTLVRNLLREM 129


>gi|157163928|ref|YP_001466843.1| putative site-specific DNA methyltransferase [Campylobacter
           concisus 13826]
 gi|112801282|gb|EAT98626.1| UvrD/REP helicase [Campylobacter concisus 13826]
          Length = 677

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 45/214 (21%)

Query: 17  ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQ   A+ P     + A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3   LSRLNKEQYTAATAPFGHNLIIASAGTGKTSTIVARIAHLLNLGVAPEKILLLTFTNKAA 62

Query: 76  AEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           +EM  R+      +I +  +  +   +S  + K   K       S+ + LL +++E    
Sbjct: 63  SEMIERLNRYFDKQITSKITAGTFHSVSFSLLKSLDKGVTLKQPSELKTLLKSLVER--- 119

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSH-----------FA-----------IADEEQSKKL 168
                         ++F   +++  +           F            I+++ + + +
Sbjct: 120 --------------RKFYHLSDVKPYGGAYLYDLYSLFQNSEQGTTFGKWISEKSEEQGV 165

Query: 169 IEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
             E  +  L     +  +     F ++L    DE
Sbjct: 166 YAEIYEDVLEEFEAEKAKFSYADFNDLLIKMRDE 199


>gi|148272377|ref|YP_001221938.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830307|emb|CAN01241.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 1091

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 71/202 (35%), Gaps = 32/202 (15%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S +  +E +DL S T+ ++ +   P     V A AGSGKT  +  RV+ LL         
Sbjct: 21  SARRIAEALDLPSPTEQQRRVIESPLEPGLVVAGAGSGKTETMASRVVWLLANGHVGVEE 80

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA E+  R+   I          + A                         
Sbjct: 81  ILGLTFTRKAAGELGVRIRARIEQLQQAGLAAVPA------------------------- 115

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ----SKKLIEEAKKSTLASI 180
            +      VQT +AF   I +         +   +  E      +++L+ E+    L  +
Sbjct: 116 -DAFATPTVQTYNAFANGIFRDSATLIGREAESVVLTEASAWQLARRLVVESTDPRLLEL 174

Query: 181 MLDNNEELKKAFYEILEISNDE 202
               +  + +A   +    ++ 
Sbjct: 175 GRGVDP-ITQAVISLSRAMSEN 195


>gi|39939107|ref|NP_950873.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722216|dbj|BAD04706.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 747

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 41/171 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLC 67
            S   + + +    QL A     +S +++A AG+GKT  L  ++  L+     PS  +L 
Sbjct: 2   FSNKTNFLEKLNKPQLAAVTSNAKSFYLAAGAGTGKTTTLNAKIAYLIEQKNLPSNQILA 61

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T  AA +M  ++ ++I                                       E 
Sbjct: 62  LTFTNKAAKQMQEKLAKMIGQ-------------------------------------EK 84

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITS--HFAIADEEQSKKLIEEAKKST 176
             G+ + T H+    I+++F      +   +F I D+   KK+I++  K  
Sbjct: 85  TKGITICTFHSLGNQILRKFIPFLPFSYRTNFKILDDNDCKKIIKDILKEM 135


>gi|13508080|ref|NP_110029.1| DNA helicase II [Mycoplasma pneumoniae M129]
 gi|2495149|sp|P75437|UVRD_MYCPN RecName: Full=Probable DNA helicase II homolog
 gi|1674187|gb|AAB96143.1| DNA helicase II [Mycoplasma pneumoniae M129]
 gi|301633619|gb|ADK87173.1| UvrD/REP helicase [Mycoplasma pneumoniae FH]
          Length = 715

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 47/200 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
             ++ +Q   EQ  A    +    V + AG+GKT I+ QR   L      +PS +L LT+
Sbjct: 2   AFNISTQLNKEQRAAVTCGKGVNIVYSGAGTGKTTIISQRFAYLFNQKRINPSNILALTY 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+ AA+EM  R+LE++    H                                       
Sbjct: 62  TRKAASEMKQRILELLPEKYHKD------------------------------------- 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI-MLDNNEELK 189
           + + T H+FC   +++   +     +F + D++ S  L +  K+S L S  +L   +  K
Sbjct: 85  VNIYTFHSFCSRFLREEGQK-----NF-VIDDDLSNFLKDFLKESELKSQKVLQIIDGFK 138

Query: 190 KAFYEILEISNDEDIETLIS 209
            A+++  + ++ +D E L+ 
Sbjct: 139 NAYFDF-DTNSLKDDERLVE 157


>gi|33861659|ref|NP_893220.1| UvrD/REP helicase subunit B [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640027|emb|CAE19562.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 1209

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GK+  L   VLR +L        +L L+ TK    E+  ++L          
Sbjct: 14  LIEASAGTGKSFTLAHLVLRNVLEKKIKSEEILLLSFTKNTCTELRDKILSRFCKLKLFL 73

Query: 94  DEILSAEI-----TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                 E+        +  +  +++  K    +   + T   LKV T HAFC  I+++F 
Sbjct: 74  QNPEETELDNTLLEWYKNFQKEETNPKKIIFDIDNFINTIYKLKVTTFHAFCNNILEEFS 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++        I +   +  L ++           + + E+  A 
Sbjct: 134 IDIGSAQDPFIENNIDN--LYQDIIDDLWIEQFQNLDPEIISAV 175


>gi|309973157|gb|ADO96358.1| Exodeoxyribonuclease V, beta subunit [Haemophilus influenzae R2846]
          Length = 1211

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEM----SHRV 82
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+      R+
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 83  LEIITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            + I      ++    +     +      +  D+ +A H L    +      + TIH FC
Sbjct: 79  TDAIDKLIAFAETQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTIHGFC 138

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             ++ Q+   + I  HF +   +    L+             
Sbjct: 139 RRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|327192364|gb|EGE59327.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512]
          Length = 686

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q +A +               V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 2   YLEKLNPQQRMAVEHGTLTDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T                    S  +   ++  + +I       +    A  L  +   
Sbjct: 62  LMTF-------------------SRRAAAEMARRVERICRDVLGTNAGVMADALAWS--- 99

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                   T H     +++ +  +  + + F I D E S  LI   +   
Sbjct: 100 -------GTFHGIGARLLRDYAQQIGLDADFTIHDREDSADLINLIRHDL 142


>gi|260582454|ref|ZP_05850245.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae NT127]
 gi|260094434|gb|EEW78331.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae NT127]
          Length = 1211

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA++   D+       +      +  D+ +A H L    +      + TIH F
Sbjct: 79  TDAIDKLTAFAKTQDKSAFKN-DEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           C  ++ Q+   + I  HF +   +    L+             
Sbjct: 138 CRRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|254445124|ref|ZP_05058600.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259432|gb|EDY83740.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 1170

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 21/187 (11%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +  + A+AG+GKT+ L +  L+L L        +L +T T+AA  E++ R+ ++     
Sbjct: 7   GTTLIEASAGTGKTYRLCRIALQLTLQHGITLDRILAVTFTEAATEELASRIQKLYQGCL 66

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ----- 145
              +     E   ++  K    D+ +A++ L   LE      + TIH+FC+  ++     
Sbjct: 67  RELETGDPKEDVLLECLKSEDFDVERAKNALRYSLEVFDEAPISTIHSFCKRCLELVALE 126

Query: 146 -QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
            Q PL+A ++    I D+     LI + +   +   +L+ +  L  A+         +D 
Sbjct: 127 TQNPLDAELS---QIEDD-----LIVQLQGEYIRQHILEASSALSLAYEA------QKDF 172

Query: 205 ETLISDI 211
           E  + +I
Sbjct: 173 EKRLKEI 179


>gi|254368883|ref|ZP_04984896.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121804|gb|EDO65974.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 1217

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 19/186 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ ++ +    + I
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGI 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII- 212
                ++ E  +  + ++  +      +  N  E    + +I ++   E     + +II 
Sbjct: 123 --EMDVSMEVNTSDIFQKVVEDFFRKHI--NKSETNFGYLQIYKLHTPEKFLDDLENIIR 178

Query: 213 SNRTAL 218
           SN   L
Sbjct: 179 SNYEIL 184


>gi|307544076|ref|YP_003896555.1| exodeoxyribonuclease V subunit beta [Halomonas elongata DSM 2581]
 gi|307216100|emb|CBV41370.1| exodeoxyribonuclease V, beta subunit [Halomonas elongata DSM 2581]
          Length = 1351

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 64/217 (29%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH------------PSTLLCLTHTKAAAAEMS 79
            S  + A+AG+GKT  +    LRL+L                P  +L +T T AA  E+ 
Sbjct: 17  GSRLIEASAGTGKTFTIALLYLRLVLGPRDADDTAAFPRPLTPPEILVVTFTNAATQELR 76

Query: 80  HRVLEIITAWSHL----------------------------------------------- 92
            R+   +   +                                                 
Sbjct: 77  ERIRARLVEAADAFQADTSAAGKGSGDAEEASGTGADKAPPETGDLFAEPQGSAEPVPDS 136

Query: 93  --SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             + E  +  +  ++   P +S  + AR L     E      V TIHA+C  ++++   +
Sbjct: 137 ASTAERPADPLLALRDSYPRESWPACARRL-RLAAEWMDEAAVSTIHAWCHRMLREHAFD 195

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           +   S FA+  E     + +E  +    +     + E
Sbjct: 196 SG--SLFALTMELDQSAMDQEIARDYWRTFYYALDPE 230


>gi|209547839|ref|YP_002279756.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533595|gb|ACI53530.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 686

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 38/170 (22%)

Query: 16  LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            + +   +Q +A +               V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 2   YLEKLNPQQRMAVEHGTLTDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T +                          +A     + ++  +  +     ++   L 
Sbjct: 62  LMTFS------------------------RRAAAEMARRVERICRDVLGANAGVMADALN 97

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             G     T H     +++ +  +  + + F I D E S  LI   +   
Sbjct: 98  WSG-----TFHGIGARLLRDYAQQIGLDADFTIHDREDSADLINLIRHDL 142


>gi|311739798|ref|ZP_07713632.1| superfamily I DNA and RNA helicase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304871|gb|EFQ80940.1| superfamily I DNA and RNA helicase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 1059

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 24/186 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T+ +  +   P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 21  PTEEQAHVIEGPFSPKLVVAGAGAGKTETMASRVVYLVANGYVRPEQVLGLTFTRKAAQQ 80

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+   +             E+                       LE     KV T  
Sbjct: 81  LEQRIRRQLIKLRDSGLIPPGGEV--------------------AEALENIAP-KVATYD 119

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++   +++++ L   +     I  E +   L  +  ++    +  +++  L      +L+
Sbjct: 120 SYAGELVREYGLLVPVEPTARIITEAERYSLAYDVVRNYTGQL--EDDRALATITETLLK 177

Query: 198 ISNDED 203
            S D D
Sbjct: 178 FSQDID 183


>gi|269103724|ref|ZP_06156421.1| ATP-dependent DNA helicase UvrD/PcrA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163622|gb|EEZ42118.1| ATP-dependent DNA helicase UvrD/PcrA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 686

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 43/159 (27%)

Query: 48  LVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
           LV R+  L+ +  A P +++ +T T  AAAEM  R+ E++   +                
Sbjct: 2   LVHRIAWLIAIEQASPYSIMSVTFTNKAAAEMRGRINELMEGSTF--------------- 46

Query: 107 KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
                                  G+   T H  C  I++   L+A +   F I D +   
Sbjct: 47  -----------------------GMWNGTFHGLCHRILRAHYLDARLPEDFNILDSDDQL 83

Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           +L+    +  + +  LD  +   +     +    DE + 
Sbjct: 84  RLL----RRLIKAQNLDEKQWPPRQGAWYINGKKDEGLR 118


>gi|206900797|ref|YP_002250463.1| ATP-dependent DNA helicase [Dictyoglomus thermophilum H-6-12]
 gi|206739900|gb|ACI18958.1| ATP-dependent DNA helicase [Dictyoglomus thermophilum H-6-12]
          Length = 656

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 39/184 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + ++ +  +    + V A  GSGKT  +V RV  L+     P  ++ LT T  AA  M 
Sbjct: 31  NEEQRKVVLEADGPSLVIAGPGSGKTRTIVYRVGYLVALGYSPKNIMLLTFTNQAARHMI 90

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +R   +I                                       E+   +   T H  
Sbjct: 91  NRTQALIR--------------------------------------ESIEEIWGGTFHHV 112

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              I++ +     I   + I D E S  LI+E  +       L     L + F   +   
Sbjct: 113 GNRILRVYGKIIGINEQYNILDREDSLDLIDECLEELFPEENLGKGI-LGELFSYKVNTG 171

Query: 200 NDED 203
            + D
Sbjct: 172 KNWD 175


>gi|219851287|ref|YP_002465719.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219545546|gb|ACL15996.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 1019

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 40/135 (29%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q  A +   +  + A  GSGKT ++ +++L LL     P+ +L LT ++ AAAEM+
Sbjct: 3   LNPAQQTAVENAGTQLILAGPGSGKTRVITEKILHLLDHGVPPTEILALTFSEKAAAEMN 62

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+                      + K+PN                    L++ T H+F
Sbjct: 63  DRI----------------------EMKRPNLD------------------LEIHTFHSF 82

Query: 140 CEAIMQQFPLEANIT 154
           C  ++Q   L + + 
Sbjct: 83  CLEVLQDNMLSSGLN 97


>gi|91782971|ref|YP_558177.1| exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans
           LB400]
 gi|91686925|gb|ABE30125.1| Exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans
           LB400]
          Length = 1230

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH--- 91
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   +        
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRSRLAELHRAIE 87

Query: 92  LSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
           + D+     I ++               A  ++   L T     + TIHAFC+  +Q+
Sbjct: 88  MDDDGGDPFIGRLFETTLAPERGIGRESALKVVRRALRTFDQAAIHTIHAFCQRALQE 145


>gi|187923606|ref|YP_001895248.1| exodeoxyribonuclease V subunit beta [Burkholderia phytofirmans
           PsJN]
 gi|187714800|gb|ACD16024.1| exodeoxyribonuclease V, beta subunit [Burkholderia phytofirmans
           PsJN]
          Length = 1232

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  N +   +L +T TKAA AE+  R+   +       D
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELDRAID 87

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +     + +             A  ++   L T     + TIHAFC+  +Q+
Sbjct: 88  MDDDGGDPFIRRLFETTLAPERGIAREDALKVVRRALRTFDQAAIHTIHAFCQRALQE 145


>gi|255323798|ref|ZP_05364924.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298978|gb|EET78269.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
           SK141]
          Length = 1059

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 24/186 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T+ +  +   P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 21  PTEEQAHVIEGPFSPKLVVAGAGAGKTETMASRVVYLVANGYVRPEQVLGLTFTRKAAQQ 80

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+   +             E+                       LE     KV T  
Sbjct: 81  LEQRIRRQLIKLRDSGLIPPGGEV--------------------AEALENIAP-KVATYD 119

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++   +++++ L   +     I  E +   L  +  ++    +  +++  L      +L+
Sbjct: 120 SYAGELVREYGLLVPVEPTARIITEAERYSLAYDVVRNYTGQL--EDDRALATITETLLK 177

Query: 198 ISNDED 203
            S D D
Sbjct: 178 FSQDID 183


>gi|116689237|ref|YP_834860.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
           HI2424]
 gi|116647326|gb|ABK07967.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
           HI2424]
          Length = 1235

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 25  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 85  TGDDGGDPFIARLLETTLGDDGALDSGTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142


>gi|295100618|emb|CBK98163.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii L2-6]
          Length = 887

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 79/196 (40%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------------------- 59
           ++           + A AGSGKT +LV R+  L+                          
Sbjct: 28  QREAVFTTNGPLLILAGAGSGKTTVLVNRIANLIRFGSAHGSRWTPREVTEDDVKALRTA 87

Query: 60  -------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
                                   ++ +T T  AA E+  R+  ++       DE+ +  
Sbjct: 88  IMTGTDAPSWLDGMLRKDAVRSWNVMAITFTNKAAGELKERLRRMLGG--EEGDEVFA-- 143

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
                                             T H+ C  I++++  E      F I 
Sbjct: 144 ---------------------------------STFHSACVRILRRWAEEIGYPRSFTIY 170

Query: 161 DEEQSKKLIEEAKKST 176
           D + S+++++   K  
Sbjct: 171 DSDDSQRVMKAVYKEL 186


>gi|297626182|ref|YP_003687945.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921947|emb|CBL56507.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1118

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 37/206 (17%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           I  +  +  + + P     V A AGSGKT ++  RV+ L+         +L LT T+ AA
Sbjct: 18  IPFSDEQLAVIAAPLEPGVVIAAAGSGKTTVMAARVVWLVGTGQVRADQVLGLTFTRKAA 77

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+S+RV   ++    +                                LE      + T
Sbjct: 78  AELSNRVTTALSGSGIID----------------------------AAALENSEAQTITT 109

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST---LASIMLDNNEELKKAF 192
             +F   ++ +      I        +    +L  +   +    L ++   N+  L  A 
Sbjct: 110 YDSFAGQLVSEHAPRIGIDPAEHRLTDATRYRLAAQVVAANEFPLVALGEWNDRRLIGAL 169

Query: 193 YEI-----LEISNDEDIETLISDIIS 213
             +       +   + IE   +D + 
Sbjct: 170 LGLDTMMTQHMVTGQRIEEFTADYVG 195


>gi|254374748|ref|ZP_04990229.1| hypothetical protein FTDG_00923 [Francisella novicida GA99-3548]
 gi|151572467|gb|EDN38121.1| hypothetical protein FTDG_00923 [Francisella novicida GA99-3548]
          Length = 1216

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ I+ +    + +
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKILSEQAFASGM 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                ++ E  +  ++++  +      +  N    +
Sbjct: 123 --EMDVSMEVDTSDILQKVVEDFFRKHINKNKTNFE 156


>gi|90407069|ref|ZP_01215258.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
 gi|90311791|gb|EAS39887.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
          Length = 669

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 38/166 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+   +     +  +T T  AA
Sbjct: 1   MKLNPGQDAAVKMISGPCLVLAGAGSGKTRVITNKIAYLVEQCDYLAKNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +   +                                       GL + T
Sbjct: 61  REMKERVSKTLGRKASR-------------------------------------GLMIST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
            H+    I+++      + + F + D++ +  L++E     +   M
Sbjct: 84  FHSLGLNIIKREVTTLGMKAGFTLFDDQDTLALLKELSVKQIQEDM 129


>gi|239500826|ref|ZP_04660136.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii AB900]
          Length = 649

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 39/152 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           S++  A+   ++  V A AG GKT  +V R   L+      + +  LT T+ AA+E+  R
Sbjct: 3   SKKKAATTTAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRAASEIVAR 62

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V + + A +                                       GL+  T H FC 
Sbjct: 63  VEQHVGAQAK--------------------------------------GLRASTFHTFCM 84

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            ++++ P    +T  F+I D +    +    +
Sbjct: 85  YLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 115


>gi|227832527|ref|YP_002834234.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183605|ref|ZP_06043026.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453543|gb|ACP32296.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 1070

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 25/185 (13%)

Query: 3   YHNSFQEHSETID-LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-A 60
           +H S ++ +  +      T+ +  +   P     V A AG+GKT  +  RV+ L+     
Sbjct: 7   HHFSPEQLATALGKPFPPTQEQAAVIDGPLGPKLVVAGAGAGKTETMASRVVSLVANGLV 66

Query: 61  HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            P  +L LT T+ AA ++  R+  +++T  S       S     ++   PN         
Sbjct: 67  RPEQVLGLTFTRKAAQQLEQRIRRQLLTLRSSGILAPGSPAAEAVENIAPN--------- 117

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                        V T  ++   +++++ L   +  +  I  E +   +  E   +   S
Sbjct: 118 -------------VSTYDSYAGDLVREYGLLMPVEPNARIITEAERYAIAHEVVSNYTGS 164

Query: 180 IMLDN 184
           +  D+
Sbjct: 165 LSTDS 169


>gi|240169399|ref|ZP_04748058.1| exonuclease V beta subunit recB [Mycobacterium kansasii ATCC 12478]
          Length = 1089

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 3/169 (1%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             + A+AG+GKT  L   V R L   +     +L +T  +AA+ E+  RV + I A    
Sbjct: 17  IVLEASAGTGKTFALAGLVTRYLAETDVTLDEMLLITFNRAASRELRERVRDQIVAAVAA 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            D  +  +   ++    ++++ +     L   L       + T H FC ++++   +  +
Sbjct: 77  LDGRMPTDTDLVRHLLGSEAERAVRLARLRDALANFDAATIATTHEFCGSVLRSLGVAGD 136

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
             S F + +      L+ E       +   + + +    + + L+++ +
Sbjct: 137 SDSGFTLRESLD--DLVAEIVDDRYLARFANTDTDPALTYAQALDLARN 183


>gi|225025554|ref|ZP_03714746.1| hypothetical protein EIKCOROL_02454 [Eikenella corrodens ATCC
           23834]
 gi|224941700|gb|EEG22909.1| hypothetical protein EIKCOROL_02454 [Eikenella corrodens ATCC
           23834]
          Length = 132

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 38/130 (29%)

Query: 37  SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
            A AGSGKT ++ +++  L+      P  +  +T T  AAAEM  R   ++ +       
Sbjct: 2   LAGAGSGKTRVITEKIAHLIREVGYAPHNIAAITFTNKAAAEMQERTAAMLGS------- 54

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                             GL V T H+    ++++         
Sbjct: 55  ------------------------------RQTRGLTVCTFHSLGMRLLREEAQHIGYKK 84

Query: 156 HFAIADEEQS 165
           +F++ D   S
Sbjct: 85  NFSVFDGSDS 94


>gi|148826022|ref|YP_001290775.1| hypothetical protein CGSHiEE_05005 [Haemophilus influenzae PittEE]
 gi|148716182|gb|ABQ98392.1| hypothetical protein CGSHiEE_05005 [Haemophilus influenzae PittEE]
          Length = 1211

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEM----SHRV 82
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+      R+
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 83  LEIITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            + I      ++    +     +      +  D+ +A H L    +      + TIH FC
Sbjct: 79  TDAIDKLIAFAETQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTIHGFC 138

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             ++ Q+   + I  HF +   +    L+             
Sbjct: 139 RRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|114326567|ref|YP_743726.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114326628|ref|YP_743786.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114309506|gb|ABI60748.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114309567|gb|ABI60808.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
          Length = 971

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 36/160 (22%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAA 76
           +  + E +LA+D      + A  GSGKT  LV+R+  L+      P +L  +T T  AA 
Sbjct: 13  NPQQLEAILATD--GPVLIIAGPGSGKTFTLVERIAYLITQEGVAPESLFVVTFTDKAAR 70

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E++ R+   +T                                    I      + + T 
Sbjct: 71  ELTTRISNRLTNLG---------------------------------IKFNLNEMYLGTF 97

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           H+ C  +++ F     +   F + D+   +  + +  K  
Sbjct: 98  HSICLRLLEDFREFTWLKRSFTLFDQFDQQYFLYQHIKDF 137


>gi|325679430|ref|ZP_08159015.1| putative ATP-dependent DNA helicase PcrA [Ruminococcus albus 8]
 gi|324109027|gb|EGC03258.1| putative ATP-dependent DNA helicase PcrA [Ruminococcus albus 8]
          Length = 782

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 53/198 (26%), Gaps = 79/198 (39%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL----------------------- 56
              +Q           + A AGSGKT +L+ R+  ++                       
Sbjct: 20  NPMQQKAVFHINGPLLILAGAGSGKTTVLINRIANMIHFGDAYETSYQQEFTPEEAQFIA 79

Query: 57  ------------------LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
                                  P  +L +T T  AA E+  R+  I+            
Sbjct: 80  DYAEGRNDDGAQLAQVIGFRPVRPWNILAITFTNKAAGELKDRIANILGEEGKGITAA-- 137

Query: 99  AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA 158
                                               T H+ C  I+++       T  FA
Sbjct: 138 ------------------------------------TFHSACVRILRRECTHIGFTQSFA 161

Query: 159 IADEEQSKKLIEEAKKST 176
           I D + SK++I+   ++ 
Sbjct: 162 IYDTDDSKRVIKSVMRAM 179


>gi|121710356|ref|XP_001272794.1| ATP-depentend DNA helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119400944|gb|EAW11368.1| ATP-depentend DNA helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 1000

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 54/165 (32%), Gaps = 40/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++   +++   + P     V A  GSGKT  L  RV  LL      P  ++C T T
Sbjct: 4   ILDGLN--TAQKTAVTSPAHILQVLAPPGSGKTKTLTSRVAYLLSHYGYQPQDVICCTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+ EM  R+  +I                                       E    L
Sbjct: 62  IKASREMRERLARLIGD-------------------------------------EVQSKL 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+ C   +  +     +   F IAD   S  +I+   K  
Sbjct: 85  VLGTFHSICRRYLVTYGYLIGLRRGFGIADSGDSLAIIKRILKRL 129


>gi|115351152|ref|YP_772991.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria AMMD]
 gi|115281140|gb|ABI86657.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria AMMD]
          Length = 1234

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +     + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVERLLETTLGDAGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|145630792|ref|ZP_01786570.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
 gi|144983674|gb|EDJ91134.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
          Length = 1211

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA++   D+       +      +  D+ +A H L    +      + TIH F
Sbjct: 79  TDAIDKLTAFAKTQDKSAFKN-DEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           C  ++ Q+   + I  HF +   +    L+             
Sbjct: 138 CRRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|169596392|ref|XP_001791620.1| hypothetical protein SNOG_00955 [Phaeosphaeria nodorum SN15]
 gi|160701299|gb|EAT92450.2| hypothetical protein SNOG_00955 [Phaeosphaeria nodorum SN15]
          Length = 974

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 40/162 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHT 71
            ++ ++   +++   + P     V A  GSGKT  L  RV   ++     P  ++  T T
Sbjct: 4   LLEGLND--AQRSAVTSPANVVQVLAPPGSGKTKTLTARVAYHVIHERLQPWNIIVCTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                          D  +A+ +L          
Sbjct: 62  IKAAREMKERIKGFVG-------------------------DKLEAKLIL---------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
              T H+     + ++  E  I  +F IAD   SK +I+   
Sbjct: 87  --GTFHSVARRFLSRYGQEIGIDKNFGIADTNDSKAIIKRIV 126


>gi|107022291|ref|YP_620618.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU
           1054]
 gi|105892480|gb|ABF75645.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU
           1054]
          Length = 2007

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 25  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 85  TGDDGGDPFIARLLETTLGDDGALDSGTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142


>gi|313113915|ref|ZP_07799473.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623754|gb|EFQ07151.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 892

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 81/202 (40%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------------- 59
           ++  + + +  +D      + A AGSGKT +LV R+  L+                    
Sbjct: 24  LNDMQRQAVFTTD--GPLLILAGAGSGKTTVLVNRIANLIRFGSAHGSKQTPRPATEDDI 81

Query: 60  -----------AHPS--------------TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
                      A PS               ++ +T T  AA E+  R+  ++       D
Sbjct: 82  KALRNAIMTGTAAPSWLDGMLRQNAVRSWNVMAITFTNKAAGELKERLRRMLGG--EEGD 139

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E+ +                                    T H+ C  I++++  E    
Sbjct: 140 EVFA-----------------------------------STFHSACVRILRRWAEEIGYP 164

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F I D + S+++++   K  
Sbjct: 165 RSFTIYDTDDSQRVMKAVYKDL 186


>gi|325831374|ref|ZP_08164628.1| putative ATP-dependent helicase PcrA [Eggerthella sp. HGA1]
 gi|325486628|gb|EGC89076.1| putative ATP-dependent helicase PcrA [Eggerthella sp. HGA1]
          Length = 730

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 73/245 (29%), Gaps = 57/245 (23%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA- 58
           MI   +   H    D   +  + Q  A   T     V A AG+GKT  L  R   L+   
Sbjct: 1   MIDMQAENRHGLLGDDAPRLNAAQREAVTATEGYVRVIAGAGTGKTRALAHRFAYLVNEL 60

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
              P  +LC T T  AA EM  R+  +                                 
Sbjct: 61  GIMPGNVLCATFTNKAAGEMRRRIRRLTGDNDTGY------------------------- 95

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS--- 175
                         + T H FC +++Q+          F + D      +++   +    
Sbjct: 96  --------------INTFHGFCVSVLQEDGHALQYPKSFLVLDNADIDAMLQVIYEERGL 141

Query: 176 TLASIMLDNNEELKKA--------FYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
           TL  +      ++ +         +Y  +     E +     D    R  +     F+ Y
Sbjct: 142 TLRDMTFSKARDMIEIMKLKERPGYYRDMLAMPLEGLRQKYLDATDARDII-----FYGY 196

Query: 228 LWRRK 232
           L++ K
Sbjct: 197 LYQEK 201


>gi|295105534|emb|CBL03078.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii
           SL3/3]
          Length = 892

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 81/202 (40%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------------- 59
           ++  + + +  +D      + A AGSGKT +LV R+  L+                    
Sbjct: 24  LNDMQRQAVFTTD--GPLLILAGAGSGKTTVLVNRIANLIRFGSAHGSKETPRPVTEEDV 81

Query: 60  -------------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
                                         ++ +T T  AA E+  R+  ++       D
Sbjct: 82  KALRTAIMTGTDAPSWLDGMLRRNAVRSWNVMAITFTNKAAGELKERLRRMLGG--EEGD 139

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E+ +                                    T H+ C  I++++  E    
Sbjct: 140 EVFA-----------------------------------STFHSACVRILRRWAEEIGYP 164

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F I D + ++++++   K  
Sbjct: 165 RSFTIYDTDDAQRVMKTVYKEL 186


>gi|317485209|ref|ZP_07944090.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316923500|gb|EFV44705.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 1084

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 50/197 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS------------------TLLCLTHTKAAAAE 77
           + A+AGSGKT+ L    L+ L   A                      +L +T T  AAAE
Sbjct: 11  IRASAGSGKTYELTTSFLKHLSGAAEAGGGSFSGCSAVHSGPHGWPEILAVTFTNRAAAE 70

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R++  +   +  +D+                    +AR  +  IL   G L V+TI 
Sbjct: 71  MQERIIGRLKDTALGTDKPAPGW------------TREQARRWVGIILRRYGALNVRTID 118

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +    I++   LE ++   F             EA    L S++               +
Sbjct: 119 SLLHLIVRLTALELDLPPDFEPVFATD------EAIAPLLDSLLE--------------Q 158

Query: 198 ISNDEDIETLISDIISN 214
              DE + +L+ +   N
Sbjct: 159 SRRDERLHSLLEEACRN 175


>gi|221201441|ref|ZP_03574480.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD2M]
 gi|221208004|ref|ZP_03581010.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD2]
 gi|221214000|ref|ZP_03586973.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD1]
 gi|221166177|gb|EED98650.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD1]
 gi|221172189|gb|EEE04630.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD2]
 gi|221178709|gb|EEE11117.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans
           CGD2M]
          Length = 1236

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEQDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A++ +         D + A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVAKLFETTLAAGGPLDTATAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|253584163|ref|ZP_04861361.1| DNA helicase II [Fusobacterium varium ATCC 27725]
 gi|251834735|gb|EES63298.1| DNA helicase II [Fusobacterium varium ATCC 27725]
          Length = 945

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 34/154 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           I+  K ++  A+       V A  GSGKT  LV+RV+ +L+     P  ++  T T  A+
Sbjct: 6   INLNKEQKEAATHIEGPLLVIAGPGSGKTRTLVERVVHMLIEKKISPEKIMVSTFTDRAS 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+ E I                                            + + T
Sbjct: 66  KELIGRISERIKDCDSKI---------------------------------NINDIYMGT 92

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           +H+ C  ++ ++   ++ +  + + DE +    I
Sbjct: 93  LHSICLRLIDEYIEYSDFSEGYQVLDELEQHFFI 126


>gi|325971393|ref|YP_004247584.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324026631|gb|ADY13390.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 650

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 42/165 (25%)

Query: 19  QTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   +Q+ A     P R+  V+A AGSGKT  ++ R    +        LL LT T   A
Sbjct: 2   ELNQQQMAAVVYDGPKRNILVNAGAGSGKTRTIIARAAHRITQGTQADRLLVLTFTNRVA 61

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+ HR+   + +                                          +++ T
Sbjct: 62  QELRHRLAHEVGSAGE--------------------------------------SVQMGT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            HAFC  +M   P    I+   +I D +    L+   +KS + ++
Sbjct: 84  FHAFCLKVMSSLPKSFAIS-GLSIIDSDDQDNLMGMVRKSLIKNL 127


>gi|119947075|ref|YP_944755.1| ATP-dependent DNA helicase Rep [Psychromonas ingrahamii 37]
 gi|119865679|gb|ABM05156.1| ATP-dependent DNA helicase Rep [Psychromonas ingrahamii 37]
          Length = 669

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 43/179 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +     +       +    V A AGSGKT ++  ++  L+   +     +  +T T  AA
Sbjct: 1   MKLNPGQDAAVKMISGPCLVLAGAGSGKTRVITNKIAHLIQNCDYLAKNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV + +                             +AR L+           V T
Sbjct: 61  REMKERVSQTLGR--------------------------KEARGLI-----------VST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+    I+++      + + F + D + +  L++E     L    L  +++L KA   
Sbjct: 84  FHSLGLDIIKREVKTLGMKTGFTLFDGQDTLALLKE-----LTEKQLKEDKDLLKALMS 137


>gi|160945249|ref|ZP_02092475.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442980|gb|EDP19985.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii
           M21/2]
          Length = 892

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 81/202 (40%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------------- 59
           ++  + + +  +D      + A AGSGKT +LV R+  L+                    
Sbjct: 24  LNDMQRQAVFTTD--GPLLILAGAGSGKTTVLVNRIANLIRFGSAHGSKETPRPVTEEDV 81

Query: 60  -------------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
                                         ++ +T T  AA E+  R+  ++       D
Sbjct: 82  KALRTAIMTGTDAPSWLDGMLRQNAVRSWNVMAITFTNKAAGELKERLRRMLGG--EEGD 139

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E+ +                                    T H+ C  I++++  E    
Sbjct: 140 EVFA-----------------------------------STFHSACVRILRRWAEEIGYP 164

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F I D + ++++++   K  
Sbjct: 165 RSFTIYDTDDAQRVMKTVYKEL 186


>gi|145634939|ref|ZP_01790646.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittAA]
 gi|145267805|gb|EDK07802.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittAA]
          Length = 1202

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E I
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 87  TAWSHL------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           T   +       + +  + +  +      +  D+ +A H L    +      + TIH FC
Sbjct: 79  TDAINKLTAFAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTIHGFC 138

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             ++ Q+   + I  HF +   +    L+             
Sbjct: 139 RRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|332171051|gb|AEE20306.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 689

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 38/155 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S    ++   +   +   + A AG+GKT  +V R   L+ +   P  +  LT TK AA+E
Sbjct: 12  SYNTKQREAITFDGKHLLLLAGAGTGKTKTIVGRAEYLIQSGVRPEKIQILTFTKRAASE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV   + A                                      T G +   T H
Sbjct: 72  IVERVKAGLPAG-------------------------------------TSGAINGSTFH 94

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           ++C  ++ +FP      + F + D +    L++ A
Sbjct: 95  SWCNQLIVKFPNLFG-AASFTVIDPDDQLSLMKMA 128


>gi|262375019|ref|ZP_06068253.1| ATP-dependent DNA helicase PcrA [Acinetobacter lwoffii SH145]
 gi|262310032|gb|EEY91161.1| ATP-dependent DNA helicase PcrA [Acinetobacter lwoffii SH145]
          Length = 662

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 41/161 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ID ++    ++  A+   + + V A AG GKT  +V R   L+      + +  LT T+
Sbjct: 6   LIDELN--PQQKQAATTEAKHSLVLAGAGCGKTKTIVARAAYLIEQGVPANQIQILTFTR 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA+E+  RV   +                                       E   GL+
Sbjct: 64  RAASEIVARVELALG--------------------------------------EQAKGLR 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
             T H FC  ++++ P    +   F+I D +    +    +
Sbjct: 86  ASTFHTFCMYLLRRIPKAFGLE-QFSIIDRDDQLMMFRLIR 125


>gi|294790511|ref|ZP_06755669.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304]
 gi|294458408|gb|EFG26761.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304]
          Length = 1578

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 29/169 (17%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
           + +  +   P  +   + A AGSGKTH + +R++ L+   +  P+ +L LT T+ AAAE+
Sbjct: 27  QQQNRIIFAPANQDLLIVAGAGSGKTHAMTERIITLIKRDHIDPNRILGLTFTRKAAAEL 86

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV + + A +   D  +       Q                           V T  A
Sbjct: 87  LSRVTKEVAAAADPYDSSVDRGFMHPQ---------------------------VFTYDA 119

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
           F ++I++Q+     ++S      +    +L  E   + +   + D   E
Sbjct: 120 FFQSIVRQYGALVGMSSDIVPLSQAGRYQLASEVVSTHIRPYIADMIAE 168


>gi|164425999|ref|XP_960368.2| hypothetical protein NCU04733 [Neurospora crassa OR74A]
 gi|157071159|gb|EAA31132.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 850

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 40/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++   ++    +    +  + A  GSGKTH L  RV+ L+      P  ++  T T
Sbjct: 11  ILDSLN--NAQARAVTSDAATVAILAGPGSGKTHTLTSRVVWLVDHVGYQPQDVVVATFT 68

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ + +                                            +
Sbjct: 69  VKAAREMKERIGKALGNGRE-------------------------------------NKI 91

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            + T H+     +  +     ++  F+IAD+  S+ +I    K  
Sbjct: 92  ILGTFHSIARRYLAAYGRHIGLSEKFSIADDNDSRSIITRICKRL 136


>gi|240172137|ref|ZP_04750796.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478]
          Length = 1066

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 27/149 (18%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + P     V A AG+GKT  +  RV+ L+    A P  +L LT T+ AA ++  RV   
Sbjct: 2   IAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAEPGQVLGLTFTRKAAGQLLRRVRSR 61

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           +   + L                                 E+ G   V T HAF  ++++
Sbjct: 62  LARLAGLEPG--------------------------AAACESAGTPVVSTYHAFAGSLLR 95

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKK 174
            + L   +    ++  E +  +L  E   
Sbjct: 96  DYGLLLPVEPDTSLLTETELWQLAFEVVN 124


>gi|16273231|ref|NP_439472.1| exodeoxyribonuclease V subunit beta [Haemophilus influenzae Rd
           KW20]
 gi|260581332|ref|ZP_05849148.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae RdAW]
 gi|1169572|sp|P45157|EX5B_HAEIN RecName: Full=Exodeoxyribonuclease V beta chain
 gi|1574781|gb|AAC22966.1| exodeoxyribonuclease V, beta chain (recB) [Haemophilus influenzae
           Rd KW20]
 gi|260091999|gb|EEW75946.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae RdAW]
          Length = 1211

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA++   D+       +      +  ++ +A H L    +      + TIH F
Sbjct: 79  TDAINKLTAFAKTQDKSAFKN-DEFLTALCDNLNIFEAIHRLKLAEQNMDLAAIYTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           C  ++ Q+   + I  HF +   +    L+             
Sbjct: 138 CRRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|88858638|ref|ZP_01133279.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas tunicata D2]
 gi|88818864|gb|EAR28678.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas tunicata D2]
          Length = 671

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +    S+       +    V A AGSGKT ++  ++  L+         +  +T T  AA
Sbjct: 1   MKLNPSQDEAVKFISGPCLVLAGAGSGKTRVITNKIAYLVQKCEYQAKNIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ + +                                           G+ V T
Sbjct: 61  REMKERLSQTLGKKEAK-------------------------------------GVWVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I+++  +       F++ D++ + +L+ E  +  L      + ++L     +I
Sbjct: 84  FHTLGLEIIKKELMTLGFKPGFSLFDDQDTSQLMAELTEKELKK----DKDQLNLLKMQI 139

Query: 196 LEISND 201
               ND
Sbjct: 140 SNWKND 145


>gi|145636195|ref|ZP_01791865.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittHH]
 gi|145270717|gb|EDK10650.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittHH]
          Length = 343

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEM----SHRV 82
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+      R+
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 83  LEIITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            + I      ++    +     +      +  D+ +A H L    +      + TIH FC
Sbjct: 79  TDAIDKLIAFAETQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTIHGFC 138

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             ++ Q+   + I  HF +   +    L+             
Sbjct: 139 RRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|317486027|ref|ZP_07944881.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316922705|gb|EFV43937.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 741

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 43/166 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ID+ +   ++    + P     V A AGSGKT  +V R+  L       S +L LT T+
Sbjct: 1   MIDISTLNPAQLEAVTAPDGPVLVIAGAGSGKTRTIVHRLAWLAEQGVPASDMLLLTFTR 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+ EM  R  +++                                        + GG+ 
Sbjct: 61  KASREMLLRATDLLGY--------------------------------------SIGGVH 82

Query: 133 VQTIHAFCEAIMQQF--PLEANITSHFAIADEEQSKKLIEEAKKST 176
             T H+F  ++++Q+             + D   S   I++ K+  
Sbjct: 83  GGTFHSFAFSVLRQYRPAWAEGPV---TVMDSADSASAIQQCKERL 125


>gi|237751187|ref|ZP_04581667.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229372553|gb|EEO22944.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 711

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 36/165 (21%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            + ++ ++  + E  +  D      + A AGSGKT  L  R+  LL         L LT 
Sbjct: 1   MDILESLNAAQKEAAIHVDNA--LLILAGAGSGKTKTLTTRLAYLLSIGIPAQNTLTLTF 58

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R L++I + S                               I ++ TP  
Sbjct: 59  TNKAAREMRERALKLIESMS-------------------------------IPMINTPLL 87

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               T H F    +Q++    +  S F + DE+  +K+I   KK+
Sbjct: 88  ---CTFHKFGLLFLQRYIHLLSRNSMFNVIDEDDKRKIIRNIKKN 129


>gi|161525258|ref|YP_001580270.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|189350004|ref|YP_001945632.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|160342687|gb|ABX15773.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|189334026|dbj|BAG43096.1| exodeoxyribonuclease V beta subunit [Burkholderia multivorans ATCC
           17616]
          Length = 1236

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEQDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A++ +         D + A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVAKLFETTLAAGGPLDAATAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|78065794|ref|YP_368563.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383]
 gi|77966539|gb|ABB07919.1| Exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383]
          Length = 1236

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +     + +    +    D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFIERLLETTLGEDGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|257459551|ref|ZP_05624660.1| acyl carrier protein [Campylobacter gracilis RM3268]
 gi|257442976|gb|EEV18110.1| acyl carrier protein [Campylobacter gracilis RM3268]
          Length = 684

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 6/128 (4%)

Query: 13  TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            +D +++  +EQ   A+ P     V A+AG+GKT  +V R+  LL     P  +L LT T
Sbjct: 9   ILDALAKLNTEQYAAATAPAGHNLVIASAGTGKTSTIVARIAHLLNLGTSPRKILLLTFT 68

Query: 72  KAAAAEMSHRVL-----EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             AA+EM  R+      +I +A    +   +S  + +  GK       ++ + LL +++E
Sbjct: 69  NKAASEMIARLQRHFDKKITSAIVAGTFHAVSYALLRELGKGVILKQPAELKTLLKSLVE 128

Query: 127 TPGGLKVQ 134
                 V 
Sbjct: 129 RRKFYHVS 136


>gi|134295236|ref|YP_001118971.1| exodeoxyribonuclease V subunit beta [Burkholderia vietnamiensis G4]
 gi|134138393|gb|ABO54136.1| exodeoxyribonuclease V, beta subunit [Burkholderia vietnamiensis
           G4]
          Length = 1234

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +    +    D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFVARLLETTLGEGGALDPDTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|145641651|ref|ZP_01797228.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
 gi|145273698|gb|EDK13567.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.4-21]
          Length = 445

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E  
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 86  ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                 +TA++   D+       +      +  D+ +A H L    +      + TIH F
Sbjct: 79  TDAIDKLTAFAKTQDKSAFKN-DEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTIHGF 137

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           C  ++ Q+   + I  HF +   +    L+             
Sbjct: 138 CRRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|208779656|ref|ZP_03247001.1| exodeoxyribonuclease V, beta subunit [Francisella novicida FTG]
 gi|208744617|gb|EDZ90916.1| exodeoxyribonuclease V, beta subunit [Francisella novicida FTG]
          Length = 1216

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 18/179 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKILPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ ++ +    + +
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGM 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIM--LDNNEELKKAFYEILEISNDEDIETLISD 210
                ++ E  +  ++++  +      +   + N E  +A+          D+E +I  
Sbjct: 123 --EMDVSMEVDTSDILQKVVEDFFRKHINKSETNFEHLQAYKLHTPEKFLADLENIIRS 179


>gi|123975388|ref|XP_001330278.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
 gi|121896327|gb|EAY01482.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
          Length = 688

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 48/229 (20%)

Query: 17  ISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +S+   EQ  A +        + A  GSGKT  ++ R+  L+ +   P  LL +T T+ A
Sbjct: 1   MSKFTEEQANAVNASIDHPIAIVACPGSGKTFTIIHRIAHLIESGIKPERLLVITFTRKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+  +    S                                        L V 
Sbjct: 61  AQELRQRLTNMGLEVSK---------------------------------------LTVS 81

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--F 192
           T H+F   I+ ++     I   F +  E +  +++     S L    + + ++L  A   
Sbjct: 82  TFHSFGRTIVAKYGSLIGI-QKFRLITENEQYQILS----SYLPQPEIADRKQLLLALQL 136

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           Y++ +    E++ ++    I+   + +L+ F     +  +I+  + +++
Sbjct: 137 YKVTKKCESEELSSIFEKYIAELKSKELVDFTDLITYPLEILRNNQYAL 185


>gi|46198946|ref|YP_004613.1| ATP-dependent DNA helicase [Thermus thermophilus HB27]
 gi|46196570|gb|AAS80986.1| probable ATP-dependent DNA helicase [Thermus thermophilus HB27]
          Length = 857

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 27/166 (16%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
              A+AG+GKTH LV+ +L L+        +  +T T+ AA E+  R  + + A +    
Sbjct: 3   LYVASAGTGKTHTLVEELLALVKGGVPLRRIAAVTFTRKAAEELRARARKGVEALAREEP 62

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                     L   +    G    TIH F    ++      ++ 
Sbjct: 63  G-------------------------LGGAVREVHGAVFGTIHGFMAEALRHAAPFLSLD 97

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             FA+ DE  ++ L  E  +S L   +L  +  L+     + +   
Sbjct: 98  PDFAVVDELLAEALFLEEARSLL--YLLGEDPGLEAFLRRLYQGRT 141


>gi|55980967|ref|YP_144264.1| ATP-dependent DNA helicase [Thermus thermophilus HB8]
 gi|55772380|dbj|BAD70821.1| ATP-dependent DNA helicase [Thermus thermophilus HB8]
          Length = 857

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 27/166 (16%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
              A+AG+GKTH LV+ +L L+        +  +T T+ AA E+  R  + + A +    
Sbjct: 3   LYVASAGTGKTHTLVEELLALVKGGVPLRRIAAVTFTRKAAEELRARARKGVEALAREEP 62

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                     L   +    G    TIH F    ++      ++ 
Sbjct: 63  G-------------------------LGGAVREVHGAVFGTIHGFMAEALRHAAPFLSLD 97

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             FA+ DE  ++ L  E  +S L   +L  +  L+     + +   
Sbjct: 98  PDFAVVDELLAEALFLEEARSLL--YLLGEDPGLEAFLRRLYQGRT 141


>gi|258545690|ref|ZP_05705924.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
 gi|258519060|gb|EEV87919.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
          Length = 666

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 40/173 (23%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAE 77
              +Q  A         V A AGSGKT ++ Q++  L+ A  +P+  +  LT T  AA E
Sbjct: 8   LNPQQTEAVRYLGGPLLVVAGAGSGKTGVITQKIAWLVRAAGYPANGIFALTFTNKAARE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV  ++   +                                       GL + T H
Sbjct: 68  MGERVRALLGKEAR--------------------------------------GLHISTFH 89

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
                I+Q+  L A +  +F + D      L++E  K    +++     ++  
Sbjct: 90  RLGLDILQKEHLAAGLRRNFTVFDARDGATLVKELSKQEDEAMVRQLQAQISA 142


>gi|206559483|ref|YP_002230244.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           cenocepacia J2315]
 gi|198035521|emb|CAR51400.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           cenocepacia J2315]
          Length = 1235

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 25  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 84

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 85  TGDDGGDPFIARLLETTLGDGGALDPETAVKRIRRALRAFDQAAIHTIHAFCQRALQE 142


>gi|254373289|ref|ZP_04988777.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571015|gb|EDN36669.1| exodeoxyribonuclease V beta chain [Francisella novicida GA99-3549]
          Length = 1216

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 18/179 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ ++ +    + +
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGM 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIM--LDNNEELKKAFYEILEISNDEDIETLISD 210
                ++ E  +  ++++  +      +   + N E  +A+          D+E +I  
Sbjct: 123 --EMDVSMEVDTSDILQKVVEDFFRKHINKSETNFEHLQAYKLHTPEKFLADLENIIRS 179


>gi|313887113|ref|ZP_07820809.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923342|gb|EFR34155.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 1123

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 16/184 (8%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           A+AG+GKTH + +  LR +L     S   +  +T T  A  E+  R  + +   +    E
Sbjct: 13  ASAGAGKTHTMTEAFLRHVLEKPRSSYQEVQAVTFTNLATRELKERFFKELYTLATKPKE 72

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
               +    +G   +    +KAR  L +IL   GGL+V+TI +F + I+    +E     
Sbjct: 73  SPFYDSFNKEGYS-DAQLSTKARTALQSILFDYGGLRVKTIDSFFQDIIHALAIELKQRP 131

Query: 156 HFAIADEEQS------KKLIE-------EAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
              I            ++L E       +A KS L +    +   L+K+     +   +E
Sbjct: 132 STRIELSTDQILSLAVERLFEQPSPIAQQAIKSFLVNRKEKSIYALRKSLKLFAKQLYNE 191

Query: 203 DIET 206
            I+ 
Sbjct: 192 QIQE 195


>gi|167582406|ref|ZP_02375280.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           TXDOH]
          Length = 927

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFVARLFETTLAPGRGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|115390643|ref|XP_001212826.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193750|gb|EAU35450.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 981

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 51/156 (32%), Gaps = 38/156 (24%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80
           +++   + P     V A  GSGKT  L  RV  LL      P  ++C T T  A+ EM  
Sbjct: 21  AQRDAVTSPASILQVLAPPGSGKTKTLTARVAYLLSHHGYQPQDVICCTFTIKASREMRE 80

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +++                                       +    L + T H+ C
Sbjct: 81  RLAKLVGD-------------------------------------DVQSRLILGTFHSIC 103

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              +  +     +   F IAD   S  +I+   K  
Sbjct: 104 RRYLVSYGYLIGLRRGFGIADSSDSLAIIKRIVKRL 139


>gi|94986496|ref|YP_594429.1| ATP-dependent exoDNAse beta subunit [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730745|emb|CAJ54107.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 1069

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 34/180 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST--------------LLCLTHTKAAAAEMSHR 81
           + A+AGSGKT+ L    L LL  + + +               +L +T T  AAAEM  R
Sbjct: 21  IRASAGSGKTYELTYSFLSLLNKSINDNNTNSSYNKYEHSWTSILAITFTNRAAAEMQQR 80

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++  +   +  +  I     T             +A H +   L     L + TI +   
Sbjct: 81  IITRLKQAALNTQPIPGLTST-------------QAAHWINIFLRNYSELNICTIDSLLH 127

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+    LE ++   F      +      EA    L SI+       ++ +  + E  +D
Sbjct: 128 TIVHSTALELHLPPDFQPIFSTE------EALTPLLDSILKKTQHN-ERLYIILKEACSD 180


>gi|124506203|ref|XP_001351699.1| helicase, belonging to UvrD family, putative [Plasmodium falciparum
           3D7]
 gi|23504627|emb|CAD51506.1| helicase, belonging to UvrD family, putative [Plasmodium falciparum
           3D7]
          Length = 1441

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
             + ++ +Q +   P   +  + A  GSGKT  L  R+++ ++      +++C+T T  A
Sbjct: 33  FNNFSEEQQRIIEIPMNVNLCIIACPGSGKTSTLTARIIKSIIEEK--QSIVCITFTNYA 90

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG---- 130
           A+++  ++++ I     +  +    +             +     L   + ++       
Sbjct: 91  ASDLKDKIMKKINCLIDICVDNKINQKLFNNKNNKINFSLKNKCTLNNKMNKSIFKVLNT 150

Query: 131 -LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
            + + TIH+FC  I+ ++         F I  +  +  +I+ A  +  +S+M       +
Sbjct: 151 VMFIGTIHSFCRYILYKY------KGTFKILTDFINTNIIKLAFNNFYSSMMSKTKGT-Q 203

Query: 190 KAFYEILEISNDE 202
             F  ILE  +++
Sbjct: 204 PGFSTILERKSNK 216


>gi|257052787|ref|YP_003130620.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691550|gb|ACV11887.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 948

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 42/201 (20%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +    ++ L         V A AG+GKT  + +R   LL     P  +L +T T  AA E
Sbjct: 5   TPNARQRELIEATEGIHVVDAGAGTGKTFAITRRYANLLSEGYEPDDVLLVTFTNNAATE 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV+          D  +SA                                 + T H
Sbjct: 65  MKERVVAR-------CDYSMSA----------------------------LRDAPISTFH 89

Query: 138 AFCEAIMQQF----PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           +FC  ++ ++    P    I      + +    ++IE  +  T  S  +D + E +  F 
Sbjct: 90  SFCHDLLLEYGADAPSYLGIDDQITGSTKLLENEVIEADRFRTFLSQFVDAHPEHEAVFR 149

Query: 194 EILEISNDEDIETLISDIISN 214
            + + ++   +  LI ++ + 
Sbjct: 150 VLNDPTS---VLELIRELAAK 167


>gi|320450685|ref|YP_004202781.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
 gi|320150854|gb|ADW22232.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
          Length = 621

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              ++ +A+  T  A V A  GSGKT  +V R+ RL+     P T+  +T TK AA EM 
Sbjct: 3   NPEQEAVANHFTGPALVIAGPGSGKTRTVVHRIARLIRKGVDPETVTAVTFTKKAAGEMR 62

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM----SKARHLLITILETPGGLK 132
            R++ ++   +       +         K   +       +AR L+  ILE     K
Sbjct: 63  ERLVHLVGEETATKVFTATFHSLAYHVLKDTGTVRVLPAEQARKLIGEILEDLQAPK 119


>gi|238026680|ref|YP_002910911.1| exodeoxyribonuclease V subunit beta [Burkholderia glumae BGR1]
 gi|237875874|gb|ACR28207.1| Exodeoxyribonuclease V, beta subunit [Burkholderia glumae BGR1]
          Length = 1249

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 28  IEASAGTGKTWNICALYVRLLLERDLDADQILVVTFTKAATAELHERIRARLAQLAHALD 87

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A++ +             A   +   L       + TIHAFC+  +Q+
Sbjct: 88  TGDHGGDPFVAKLFETTLGPQGGIGTELAAKRVRRALRKFDQAAIHTIHAFCQRALQE 145


>gi|187931893|ref|YP_001891878.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712802|gb|ACD31099.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 671

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 38/146 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V A AGSGKT ++++++  L+    +P  ++L +T T  AA +M  RV   +   
Sbjct: 17  ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKKMQERVKSRL--- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  D  K++           GL + T H+   +I+++   
Sbjct: 74  -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFN 99

Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175
           E     +F + D   S  LI +    
Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125


>gi|25027347|ref|NP_737401.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492628|dbj|BAC17601.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 1175

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 71/186 (38%), Gaps = 20/186 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           + T  +  +         V A AG+GKT  +  RV+ L+    A P  +L LT T+ AA 
Sbjct: 115 APTAQQAAIIGAEPGPLLVVAGAGAGKTETMAARVVWLVANGFAAPDQVLGLTFTRKAAQ 174

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++S R+ + +   + +                P   D+  +  +  ++        V T 
Sbjct: 175 QLSQRIRQRLETLAGI----------------PTLRDLDPSGGIARSL--QAITPTVSTY 216

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI-MLDNNEELKKAFYEI 195
            ++  ++++++ L   +     +  + +   +  +   +    +    +   + +   ++
Sbjct: 217 DSYAGSLLREYGLLLPVEPSARLITQTELYHIARQVVDNYRGELTATQSPATVTEYLLDL 276

Query: 196 LEISND 201
           +   ++
Sbjct: 277 VSEMDN 282


>gi|254168521|ref|ZP_04875365.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469]
 gi|197622576|gb|EDY35147.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469]
          Length = 927

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 37/195 (18%)

Query: 14  IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
           +D        ++      ++   + A AG+GKT  L +R+L LLL  N     ++  T T
Sbjct: 18  LDGKKPLSEMQKKAVISESKHIRILAGAGAGKTETLTRRILYLLLYKNVPAEEIVAFTFT 77

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA  M  RV                 ++T+I G+                     G +
Sbjct: 78  EKAAQSMKSRVYN---------------QVTEIMGENYAA---------------QLGKM 107

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKK 190
            + TIH +   I+Q +        ++ + D+ ++   ++    +  + ++   N  +  K
Sbjct: 108 YIGTIHGYSLRILQDYFEY----GNYEVLDDKQEMAFVMRRGFEIGINNLNGKNYSDKCK 163

Query: 191 AFYEILEISNDEDIE 205
            F E + +  DE I+
Sbjct: 164 RFVEAVNVIYDELID 178


>gi|154148234|ref|YP_001406664.1| ATP-dependent DNA helicase PcrA [Campylobacter hominis ATCC
           BAA-381]
 gi|153804243|gb|ABS51250.1| ATP-dependent DNA helicase PcrA [Campylobacter hominis ATCC
           BAA-381]
          Length = 686

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 37/182 (20%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D++      Q L A+       + A AGSGKT  +  R+  LL     P++ L LT T 
Sbjct: 1   MDILKDLNENQKLAATHIDGPMLILAGAGSGKTKTITSRLAYLLSNGVDPASTLTLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA+EM  R   +I         +L                                   
Sbjct: 61  KAASEMRLRAYSLIGDLKLPLSPLLC---------------------------------- 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H F    ++ +  + N  ++F I D +  KK+++        +++     + K A 
Sbjct: 87  --TFHKFGLLFLKFYINKLNRKNNFIIIDTDDKKKILKSFDSDIPTALIASEISKYKNAL 144

Query: 193 YE 194
            +
Sbjct: 145 LK 146


>gi|116328993|ref|YP_798713.1| exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330399|ref|YP_800117.1| exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121737|gb|ABJ79780.1| Exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124088|gb|ABJ75359.1| Exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 1054

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 69/134 (51%), Gaps = 31/134 (23%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +S ++ A+AG+GKT+ +++ V  L+  +  P + +L LT+T+ AA E+  R+ + +    
Sbjct: 10  KSCFIEASAGTGKTYTIMEIVKDLIGEHGIPLTQILILTYTEKAAGELKERLRKKL---- 65

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                 +++++TK            +AR L          + + TIH FC  I+Q++P+E
Sbjct: 66  ------IASDLTK------------EAREL--------DQVTISTIHGFCNMILQEYPVE 99

Query: 151 ANITSHFAIADEEQ 164
               S + + D ++
Sbjct: 100 TETPSKWILTDSKE 113


>gi|162451111|ref|YP_001613478.1| exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56']
 gi|161161693|emb|CAN92998.1| Exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56']
          Length = 1347

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 21/190 (11%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-------------- 63
           ++      L     R+  V+A+AG+GKTH L    + L L                    
Sbjct: 8   AELAEGDALIYAFRRNVVVAASAGTGKTHRLTALYVLLTLGLTSLGLPDAASAAPPVPPD 67

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE-------ILSAEITKIQGKKPNKSDMSK 116
            ++  T ++AAA E++HRV   +   +  + E       IL A    + G       +++
Sbjct: 68  RIVATTFSRAAAREIAHRVERSLREIARWNGEADIPFADILRARQAAVAGLGGASLPVAE 127

Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            R      L      ++ T+H   + I+ +  +   ++    I DEE+++ L + A    
Sbjct: 128 LRKRAEEALARLPAARIDTLHGVAKQIVDRHAIAMGLSPSARILDEEEAQALSDLAVDEA 187

Query: 177 LASIMLDNNE 186
           L+  + +  E
Sbjct: 188 LSRALAEGGE 197


>gi|257054747|ref|YP_003132579.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
 gi|256584619|gb|ACU95752.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
          Length = 1090

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 19/176 (10%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           + +E + L   T  +  + + P   A V A AG+GKT  +  RV+ L+      P  +L 
Sbjct: 16  DIAEALGLPVPTPEQAAVVAAPPEPALVVAGAGAGKTETMAARVVWLVANGLVTPDRVLG 75

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA                L+D + +           +  D S  R L +     
Sbjct: 76  LTFTRKAAR--------------QLADRVRARLRRLAGSGLLDDVDPSGRRRLAV----A 117

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            G   V T HA+   ++ ++ L   +     I  E  S +L      S  A +  D
Sbjct: 118 SGEPTVLTYHAYAGRLLAEYGLRLPVQPGARILSETASWQLAYRVVSSWDADLDTD 173


>gi|33598621|ref|NP_886264.1| ATP-dependent DNA helicase [Bordetella parapertussis 12822]
 gi|33574750|emb|CAE39409.1| ATP-dependent DNA helicase [Bordetella parapertussis]
          Length = 661

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 38/141 (26%)

Query: 37  SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
            A AGSGKT ++ Q++  LL         ++ LT T  AA EM+ RV  ++       D 
Sbjct: 2   LAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLV-------DP 54

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L+                               GL + T HA    ++++    A +  
Sbjct: 55  KLAK------------------------------GLTISTFHALGVRLLREEAAHAGLKP 84

Query: 156 HFAIADEEQSKKLIEEAKKST 176
            F+I D + +  +I+E   +T
Sbjct: 85  QFSILDADDAMSIIQELLATT 105


>gi|194335096|ref|YP_002016956.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194312914|gb|ACF47309.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 984

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 36/202 (17%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +S T  +     D T      A AGSGK+  L  R+ RL+   A P  ++  T T+ AA 
Sbjct: 13  LSLTDDQYNAVIDDTNEILCLACAGSGKSRTLSFRIARLIHEGAKPENIIAFTFTEKAAE 72

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
            +  RV   +                                      +   G + + TI
Sbjct: 73  SIKRRVASALEKAGLP--------------------------------VALVGAMYIGTI 100

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKK-LIEEAKKSTLASIMLDNNEELKKAFYEI 195
           HAFC+ ++     +      + + +E + +  L+    +  L ++  + N  + +   E+
Sbjct: 101 HAFCQNLLGSMNAKYR---QYEVLNENRLRLFLLSRYYELELNALQANRNARMFQTIAEV 157

Query: 196 LEISNDEDIETLISDIISNRTA 217
                  + E L  D I    A
Sbjct: 158 SNAWKMANDEMLSLDEIEEEDA 179


>gi|295090956|emb|CBK77063.1| Superfamily I DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 1133

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 43/157 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            + ++  A+ P RS  V A  G+GKT  L  R+  LL +    PS +  +T T  AA E+
Sbjct: 514 NREQRRAAALPARSMAVIAGPGTGKTGTLTARIRCLLEVRRVRPSEITAVTFTNRAAEEL 573

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                                        T   ++  T H+
Sbjct: 574 RERLKREMPR------------------------------------HRTISRIQTGTFHS 597

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C ++++Q   E      F +AD  +  +L  +  K 
Sbjct: 598 LCYSMLRQAGAE------FELADSLELTELASDVLKE 628


>gi|145633194|ref|ZP_01788925.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655]
 gi|144986040|gb|EDJ92630.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655]
          Length = 850

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E I
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 87  TAWSHL------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           T   +       + +  + +  +      +  D+ +A H L    +      + TIH FC
Sbjct: 79  TDAINKLTAFAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTIHGFC 138

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             ++ Q+   + I  HF +   +    L+             
Sbjct: 139 RRMLMQYAFHSGI--HFNLELIKDQSDLLVRFANEFWREHFY 178


>gi|294053735|ref|YP_003547393.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221]
 gi|293613068|gb|ADE53223.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221]
          Length = 1201

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 7/181 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +E++   D       +QL  S     + +  + A+AG+GKT+ +   VL LLL       
Sbjct: 4   KENNSMGDQPYMDAPQQLEVSSFELESGTTLIEASAGTGKTYTIQYIVLDLLLKGLSLPE 63

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           +L +T T+AA  E+S R+   +   +     +   +A +  +  +   ++  +  R  + 
Sbjct: 64  ILVVTFTEAATKELSDRLQSFLVEVNQTLSGNGTENAALESVLNRASRRTGAACVRRCIH 123

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             +       + TIH FC+  +Q+    A+ +    +        +++E     L  + L
Sbjct: 124 RAMLEVDQAAIYTIHGFCQRALQENAFAADASFDTELC--ADVTPIVDELVLDFLRRVQL 181

Query: 183 D 183
           +
Sbjct: 182 E 182


>gi|119479991|ref|XP_001260024.1| ATP-depentend DNA helicase, putative [Neosartorya fischeri NRRL
           181]
 gi|119408178|gb|EAW18127.1| ATP-depentend DNA helicase, putative [Neosartorya fischeri NRRL
           181]
          Length = 1001

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             +++   + P     V A  GSGKT  L  RV   L      P  ++C T T  A+ EM
Sbjct: 9   NTAQKAAVTSPASILQVLAPPGSGKTKTLTARVAYFLSHYGYQPQDVICCTFTIKASREM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +++                                       E    L + T H+
Sbjct: 69  RERLAKLVGD-------------------------------------EVQSRLILGTFHS 91

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C   +  +     +   F IAD   S  +I+   K  
Sbjct: 92  ICRRYLVSYGYLIGLRRGFGIADSSDSLAIIKRIVKRL 129


>gi|302845461|ref|XP_002954269.1| hypothetical protein VOLCADRAFT_118642 [Volvox carteri f.
           nagariensis]
 gi|300260474|gb|EFJ44693.1| hypothetical protein VOLCADRAFT_118642 [Volvox carteri f.
           nagariensis]
          Length = 1705

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 51/168 (30%)

Query: 20  TKSEQLLAS-DPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
              EQL A  D +     VSA  GSGKT  L+ RV  L+ +   HP  +  +T T+  A 
Sbjct: 355 LNDEQLAAVRDRSAPIVTVSAGPGSGKTRTLIARVTELVQVHGVHPRNIGLVTFTRKTAD 414

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+S R+ E + A +                                            T 
Sbjct: 415 ELSSRLREALGAAAAEDVFT-------------------------------------GTF 437

Query: 137 HAFCEAIMQQFPLEAN-----------ITSHFAIADEEQSKKLIEEAK 173
           H+    +++ +   A+           ++  F I +E++  ++  +A 
Sbjct: 438 HSLSAKLLRSYFHLADRTSDPSARLSWLSKDFRILEEQERDRIFMQAL 485


>gi|225849851|ref|YP_002730085.1| putative UvrD/REP helicase [Persephonella marina EX-H1]
 gi|225645334|gb|ACO03520.1| putative UvrD/REP helicase [Persephonella marina EX-H1]
          Length = 1021

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 27/187 (14%)

Query: 37  SANAGSGKTHILVQRVL--RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            A+AG+GKT+ LV++++   ++    +   +   T T+ AA+E+  R+   I        
Sbjct: 7   IASAGTGKTYTLVEKIVDEYIIRKRINIDQVFVSTFTEKAASELKSRIYARIKE------ 60

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                   KI   + N   +         +  +     + TIH+    I++  P ++ IT
Sbjct: 61  --------KIYENQKNPDQLKLLFSNFRNVQHSY----IGTIHSLLLRILKANPDKSGIT 108

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
               + D+ Q + L  E+       I L+ N E            N   I T+  +I +N
Sbjct: 109 EDIKVIDDLQQEALFFESF-----EIFLEKNRERAGILANYFSGKN--QIYTVFKNIYAN 161

Query: 215 RTALKLI 221
              ++  
Sbjct: 162 LWKIERY 168


>gi|223040423|ref|ZP_03610697.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267]
 gi|222878273|gb|EEF13380.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267]
          Length = 698

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 39/197 (19%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
             + +D +++   +++ AS    +  + A AGSGKT  +  R+  L+      PS  L L
Sbjct: 5   MPDLLDQLNEN--QRVAASHIDGAMLILAGAGSGKTKTITTRLAYLISEVGIAPSNTLTL 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  R L+++         +L                               
Sbjct: 63  TFTNKAANEMRTRALKMLGDAGKNFTPLLC------------------------------ 92

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
                 T H F    ++ +       ++F I D +  K++++  + +    ++       
Sbjct: 93  ------TFHKFGLLFLKFYIDRLGRKNNFVIIDTDDKKRILKGFESNIATPVLASEISNF 146

Query: 189 KKAFYEILEISNDEDIE 205
           K +   + + ++   IE
Sbjct: 147 KNSLLSVEDAAHHAAIE 163


>gi|307578540|gb|ADN62509.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 1243

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 46/191 (24%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +   V RL++        +L +T T+AA  E+  R+ E +   + L 
Sbjct: 18  LIEASAGTGKTFTMATLVTRLVVERGWRIGHILAVTFTEAATQELRTRIRERLILAARLV 77

Query: 94  DEI------LSAEITKIQGKKPNKSDMSKA----------------------RHLLITIL 125
            +       L A   +I    P+  D  +                       R  L    
Sbjct: 78  PQAAELPVPLPAAQPQIPHPTPHPQDAPRITPGVTNSTSPEPPDVALTLQILRTHLTATD 137

Query: 126 ETPGGL--------------KVQTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKL 168
           ETP  L               + TIH FC  ++++  L      I      +D +   +L
Sbjct: 138 ETPHALHSRLQQAADEIDLAAIFTIHGFCTRLLREHALHTGQSFIPPTLLASDRDLLHEL 197

Query: 169 IEEAKKSTLAS 179
             +  +  +A 
Sbjct: 198 AADIWRQEIAD 208


>gi|289617273|emb|CBI56040.1| unnamed protein product [Sordaria macrospora]
          Length = 784

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 40/165 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D ++   +++   +    +  + A  GSGKTH L  RV+ L+      P  ++  T T
Sbjct: 11  ILDSLN--NAQRRAVTSDAATVAILAGPGSGKTHTLTSRVVWLVDHVGYQPQDVVVATFT 68

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+ + +                             + + +++         
Sbjct: 69  VKAAREMKERIGKALGNG--------------------------REKKIIL--------- 93

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              T H+     +  +     ++  F IAD+  S+ +I    K  
Sbjct: 94  --GTFHSIARRYLAAYGRHIGLSEKFNIADDNDSRAIITRICKRL 136


>gi|269101917|ref|ZP_06154614.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161815|gb|EEZ40311.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 1221

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 13/161 (8%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHR 81
            S  + A+AG+GKT  +    LRLLL +               +L +T T+AA AE+   
Sbjct: 24  GSRLIEASAGTGKTFTIASLYLRLLLGHGDEQSRFPYPLTVDQILVVTFTEAATAELRD- 82

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
            +      + ++    ++    I     + +D   A   L+          + TIH FC+
Sbjct: 83  RIRRRIHDARIAFARGNSSDPVIAPLLEDIADHKAAAATLLQAERQMDEAAIYTIHGFCQ 142

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            ++ Q   E+   S F      +  +L  +           
Sbjct: 143 RMLTQNAFESG--SLFTNEFVTEESQLRAQVAADYWRRQFY 181


>gi|300932820|ref|ZP_07148076.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 1224

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 16  LISQTKSE-QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
             + T  + Q++ + P+ +  V A AG+GKT  +  RV+ L+      P  +L LT T+ 
Sbjct: 34  YPNPTDQQAQVIGAKPSGAYLVVAGAGAGKTETMAARVVWLVANGYVRPEQVLGLTFTRK 93

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA+E++ RV + +   ++            +    P                       +
Sbjct: 94  AASELAQRVRKRLETLANSPMYA-----AALGADDPRHEWFKNV------------APTI 136

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            T  ++   I++++ L   +     I  + +   +  E  
Sbjct: 137 ATYDSYAGTIVREYGLLVPMEPAGRIIGDAEQWLIAHEVV 176


>gi|229845144|ref|ZP_04465279.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 6P18H1]
 gi|229811980|gb|EEP47674.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 6P18H1]
          Length = 1202

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 16/162 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86
            + A+AG+GKT+ +    LRLLL           +   +L +T T+ A  E+  ++ E I
Sbjct: 19  LIEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERI 78

Query: 87  TAWSHL------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           T   +       + +  + +  +      +  D+ +A H L    +      + TIH FC
Sbjct: 79  TDAINKLTAFAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTIHGFC 138

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             ++ Q+   + I  +  +   +    L+             
Sbjct: 139 RRMLMQYAFHSGIYFNLELI--KDQSDLLVRFANEFWREHFY 178


>gi|167620501|ref|ZP_02389132.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           Bt4]
          Length = 1253

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFVARLFETTLAPGRGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|309388624|gb|ADO76504.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 805

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 58/206 (28%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           YH+ F  + E        + +Q       R   V A AG+GKT +L  R+  L+     P
Sbjct: 37  YHDLFHNYGEY----PLNRKQQEAVVKNQRYNQVIAAAGTGKTTVLAYRIKYLIEEGIEP 92

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           + +L +T++  AA EM  R+ E                                      
Sbjct: 93  ARILAITYSNKAAEEMQIRLKEKF------------------------------------ 116

Query: 123 TILETPGGLKVQTIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                   + V TIH+F  +I+++      + +  +           ++EE     L   
Sbjct: 117 ----NITEVNVNTIHSFANSIVKEESNYKLSTVDPN-------DITNIVEEGYNQFL--- 162

Query: 181 MLDNNEELKKAFYEILEISNDEDIET 206
             ++++E +  FY+ L   +DE ++ 
Sbjct: 163 --NSSQEFRGYFYKFLSHQDDEYLDE 186


>gi|255321476|ref|ZP_05362634.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277]
 gi|255301332|gb|EET80591.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277]
          Length = 694

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 70/192 (36%), Gaps = 39/192 (20%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
             + +D +++++ E   AS    +  + A AGSGKT  +  R+  L+      PS  L L
Sbjct: 1   MPDLLDELNESQRE--AASHTDGAMLILAGAGSGKTKTITTRLAYLISELGIPPSNTLTL 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA+EM  R L+++         +L                               
Sbjct: 59  TFTNKAASEMRARALKMLGDAGKNFTPLLC------------------------------ 88

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
                 T H F    ++ +       ++F I D +  K++++  +     S++       
Sbjct: 89  ------TFHKFGLLFLKFYIDRLKRKNNFVIIDTDDKKRILKGFEGDIPTSVLASEISNF 142

Query: 189 KKAFYEILEISN 200
           K +   + E+ N
Sbjct: 143 KNSLLSVEEVLN 154


>gi|307721378|ref|YP_003892518.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
 gi|306979471|gb|ADN09506.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
          Length = 693

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 17  ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQ   A+ P     + A+AG+GKT  +V R+  LL  N  P+ +L LT T  AA
Sbjct: 3   LSRLNEEQYAAATSPHSKNLIIASAGTGKTSTIVGRIGHLLNNNIEPNEILLLTFTNKAA 62

Query: 76  AEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARH---LLITILETPGG 130
           AEM  RV E   A     +      A   +   K+  +  + + R    L  ++ E    
Sbjct: 63  AEMVARVAEYFGAGVAKKIDAGTFHAVSYRWLKKRDKRVVLKQQRELKTLFRSVFEKRSF 122

Query: 131 LKV 133
           + +
Sbjct: 123 MHI 125


>gi|260577890|ref|ZP_05845821.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
 gi|258603984|gb|EEW17230.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
          Length = 1205

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 21/174 (12%)

Query: 3   YHNSFQEHSETIDL-ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           +  S QE S+ +    + T  +  +  + P  +  V A AG+GKT  +  R + ++    
Sbjct: 6   HIFSPQELSQLMGQKFAPTDEQADVIQAGPFGNFLVVAGAGAGKTETMAARAVWMVANGY 65

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  +L LT T+ AAAE+  R+ + +   +       SA + ++    P +  +     
Sbjct: 66  ARPEQILGLTFTRKAAAELGERIRQRLQTLAG------SAFMDQLSADDPRREVLKNI-- 117

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                        V T  ++   I++++ L         +  + +   +  +  
Sbjct: 118 ----------APAVATYDSYAGDIVREYGLLIPSEPAARLITDAERWMVARDVV 161


>gi|171682312|ref|XP_001906099.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941115|emb|CAP66765.1| unnamed protein product [Podospora anserina S mat+]
          Length = 988

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 38/161 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L S   +++   S    +  + A  GSGKTH L  RV+ L+      P  ++  T T  A
Sbjct: 11  LNSLNDAQRRAVSSDAATVAILAGPGSGKTHTLTSRVVWLIDQVGYRPEDVVVATFTVKA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ + +         +                                      
Sbjct: 71  AREMKERIGKALGDGREKKIVL-------------------------------------G 93

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             H+     +  +  +  I   F IAD+  S+ +I    K 
Sbjct: 94  NFHSIARRYLAAYGRKIGINQKFGIADDGDSRSIIARICKR 134


>gi|118497936|ref|YP_898986.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
           tularensis subsp. novicida U112]
 gi|194323158|ref|ZP_03056942.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118423842|gb|ABK90232.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
           novicida U112]
 gi|194322522|gb|EDX20002.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 1216

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 16/146 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  + +  +RLLL     PS +L +T TK A  E+  RV + I       
Sbjct: 16  IIEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 ++      +  +SD    +HL  ++LE      + TIH FC+ ++ +    + +
Sbjct: 70  ------DVLASYTDEKKESDKENYKHLKRSLLE-IDEAAIFTIHGFCKKVLSEQAFASGM 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLAS 179
                ++ E  +  ++++  +     
Sbjct: 123 --EMDVSMEVDTSDILQKVVEDFFRK 146


>gi|324014655|gb|EGB83874.1| DNA helicase II [Escherichia coli MS 60-1]
          Length = 672

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 42/149 (28%)

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + N  P +++ +T T  AAAEM HR+ +++                              
Sbjct: 1   MENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT---------------------------- 32

Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                     + GG+ V T H     +++   ++AN+   F I D E   +L+    K  
Sbjct: 33  ----------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRL 78

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIE 205
           + ++ LD  +   +     +    DE + 
Sbjct: 79  IKAMNLDEKQWPPRQAMWYINSQKDEGLR 107


>gi|289607095|emb|CBI60889.1| unnamed protein product [Sordaria macrospora]
          Length = 111

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 40/140 (28%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
               +  +++ + + +L +D      V A AG+GKT  L  R+  LL    A+PS +L +
Sbjct: 9   DPPYLSGLNEPQRDAVLTTD--GPVLVLAGAGTGKTAALTARLAHLLYTRKAYPSEILSV 66

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM  RV  ++                                          
Sbjct: 67  TFTNKAAREMRERVGRLVGDMVE------------------------------------- 89

Query: 129 GGLKVQTIHAFCEAIMQQFP 148
           G   + T HA    ++++  
Sbjct: 90  GMPWLGTFHAIGAKMLRRHA 109


>gi|237786046|ref|YP_002906751.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758958|gb|ACR18208.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 1226

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 23/182 (12%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
            ++ +E +   + T+ +  +         V A AG+GKT  +  R + L+         +
Sbjct: 12  AKDIAEALHRPAPTREQTAVIEADLEPQLVVAGAGAGKTETMAARAVFLVANGWVSTDQI 71

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT T+ AA E++ R+   +T  +             IQ   PN       + +  T++
Sbjct: 72  LGLTFTRKAAGELNTRIRHRLTQLAATD---------LIQSLPPNDPRRKNMQDIQQTVV 122

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                    T  +F + ++ +F L   I     +AD  +            ++ +  ++ 
Sbjct: 123 ---------TYDSFMQKVVHEFGLLLPIEPAAQVADGPEQWL----TANRVISDLGYEDE 169

Query: 186 EE 187
            +
Sbjct: 170 SD 171


>gi|257139612|ref|ZP_05587874.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           E264]
          Length = 1272

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFVARLFETTLAPGRGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|83720729|ref|YP_443363.1| exodeoxyribonuclease V subunit beta [Burkholderia thailandensis
           E264]
 gi|83654554|gb|ABC38617.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           E264]
          Length = 1321

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 76  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 135

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 136 TGDDGGDPFVARLFETTLAPGRGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 193


>gi|257052990|ref|YP_003130823.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691753|gb|ACV12090.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 959

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 42/201 (20%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +    ++ L         V A AG+GKT  + +R   LL     P  +L +T T  AA E
Sbjct: 5   TPNARQRELIEAIEGIHVVDAGAGTGKTFAITRRYANLLSEGYEPDDVLLVTFTNNAATE 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV+          D  +SA                                 + T H
Sbjct: 65  MKERVVAR-------CDYSMSA----------------------------LRDAPISTFH 89

Query: 138 AFCEAIMQQF----PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           +FC  ++ ++    P    I      + +    ++IE  +  T  S  +D + E  +A +
Sbjct: 90  SFCHDLLLEYGADAPSYLGIDDQITQSTQLLENEVIEADRFRTFLSQFVDAHPE-HEAVF 148

Query: 194 EILEISNDEDIETLISDIISN 214
            +L       +  LI ++ + 
Sbjct: 149 RVLNDPT--ALLELIRELAAK 167


>gi|120603850|ref|YP_968250.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120564079|gb|ABM29823.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 719

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 41/166 (24%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            I+   +  + Q  A         V A AGSGKT  +V R+  LL      S++L LT T
Sbjct: 1   MIEFAKELNAAQYEAVTTLDGPVLVIAGAGSGKTRTVVYRLANLLERGVPASSILLLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM  R   ++                                           G+
Sbjct: 61  RKAANEMLQRASRLLGYGVQ--------------------------------------GI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITS-HFAIADEEQSKKLIEEAKKST 176
              T HAF  ++++Q+   A +      I D   S   I+  K + 
Sbjct: 83  AGGTFHAFAYSLLRQY-HPARLEGRDLTIMDGADSVAAIQHCKDAL 127


>gi|88856786|ref|ZP_01131440.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
 gi|88813954|gb|EAR23822.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
          Length = 1086

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 21/201 (10%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S  + +  + + + T  +Q++   P   A V A AGSGKT  +  RV+ L+  N   P  
Sbjct: 3   SSVDLAGLMGIHAPTAQQQVVIEAPLSPALVVAGAGSGKTDTMASRVVWLVANNFVSPDQ 62

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA  +S RV E I                    +        +      T 
Sbjct: 63  VLGLTFTRKAAGSLSKRVSERIAIL-----------------RDVQNRHPERFEATPETA 105

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                   + T ++F  A+  +  L         + ++  S +L  +   ++    ++  
Sbjct: 106 SIEFDQPTISTYNSFASALFSENALLIGREPESTLLNDPSSWQLARKLVVASTDDRLVGL 165

Query: 185 NEE---LKKAFYEILEISNDE 202
            +    L +A  ++    +D 
Sbjct: 166 EKSINGLTEAVLDLSHALSDN 186


>gi|331694962|ref|YP_004331201.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949651|gb|AEA23348.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 1224

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
             +  + L   T+ +  + + P+R A V A AG+GKT  +  RV+ L+      P  +L 
Sbjct: 7   SLAAALGLPPPTEEQAAVIAAPSRPALVVAGAGAGKTETMAARVVWLVATGQVLPEQVLG 66

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   +                 + + + + +A  L       
Sbjct: 67  LTFTRKAAQQLGQRVRSRLRRLAGSP-----------LLDELDPTGVRRASVL------- 108

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            G   V T HA+   ++ +  L         +  +  S +L      +    + +D
Sbjct: 109 AGEPTVSTYHAYAGRLVAEHALRLPAEPAARLLTQTASWQLAHRVVSTWADDLEID 164


>gi|218886850|ref|YP_002436171.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757804|gb|ACL08703.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1244

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +    +++   +   +   V A  G+GKT  LV RVL L+        +L +T T+ AAA
Sbjct: 558 VRFNPAQRRALAAGPQPVLVLAGPGTGKTRTLVGRVLHLVETGIDARRILAVTFTRRAAA 617

Query: 77  EMSHRVLEIITAWSHLSDEILSAEIT-----KIQGKKPNKSDMSKARHLLITI 124
           EM  R+   +   + L        +      +     P       AR +    
Sbjct: 618 EMDERLATALGEDAPLPRTDTLHALAFEYWHRATPTPPVLLSEEAARRVFAEA 670


>gi|34499531|ref|NP_903746.1| exodeoxyribonuclease V subunit beta [Chromobacterium violaceum ATCC
           12472]
 gi|34105381|gb|AAQ61736.1| exodeoxyribonuclease V, beta subunit [Chromobacterium violaceum
           ATCC 12472]
          Length = 1196

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA---NAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88
            + A+AG+GKT  +     RLLL     A P     +L +T+TKAA AE+  R+   +  
Sbjct: 19  LIEASAGTGKTWTIAALFARLLLEERDGAPPPAIERILVVTYTKAATAELRERLRRRLAE 78

Query: 89  WSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
              L D     +  +  +  + P       AR  L   +       + TIH FC+ ++  
Sbjct: 79  MLALLDGKADGDDFLRALAARFPEGPARDVARQRLTAAVNGFDAAAIYTIHGFCQRVLTD 138

Query: 147 FPLEANITSHFAIADEEQSK--KLIEEAKKS------TLASIMLDNNEELKKAFYEI 195
              E+  T    + +++ ++  +++++  +        LA ++++  E       EI
Sbjct: 139 AAFESGQTFQAELVEDDAARLAEIVDDFWRRRIVAAPLLAQVLVERGETPDAWLAEI 195


>gi|269218749|ref|ZP_06162603.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211860|gb|EEZ78200.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 1158

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 27/182 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  ++ +      +  V+A AGSGKT  +  R+   + A    P  +L LT T+ AA E
Sbjct: 30  PTPEQREVIESEDAAILVTAGAGSGKTATMANRIAYHVAAGRVSPEEVLGLTFTRKAAGE 89

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +S RV   +                +  G  P+    S++         +     + T +
Sbjct: 90  LSQRVDRALGRL-------------RAAGMLPHTGQTSRS---------SLARPTISTYN 127

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           AF   I   + +         +  + +  +L++    S +A   +D +   +     I+E
Sbjct: 128 AFASDIAASYGMLVGADPTARLVTDAERFQLMD----SVVAEGAVDPDVASRHGRARIVE 183

Query: 198 IS 199
           ++
Sbjct: 184 VA 185


>gi|205372123|ref|ZP_03224939.1| UvrD/REP helicase [Bacillus coahuilensis m4-4]
          Length = 245

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 39/150 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+S+  + +    +  V A  GSGKT +L +R++ LL  + +   +L LT +  AA E+S
Sbjct: 6   TESQLKIVNHVDGALLVIAGPGSGKTRVLTERIINLL--HLNKKRILALTFSNKAAEEIS 63

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +T                                      +    + V TIH+F
Sbjct: 64  ERIEQNLTE-------------------------------------DVFEDVFVGTIHSF 86

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           C  ++        + S   + + E  K  I
Sbjct: 87  CLDVVMNRGNLIGLPSGMVLFESEADKMAI 116


>gi|120602213|ref|YP_966613.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120562442|gb|ABM28186.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 1152

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 35/192 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLL----------------LANAH--PSTLLCLTHTKAAAAE 77
           + A+AGSGKT+ L +R L LL                    H  P  +L  T T  AA E
Sbjct: 10  IKASAGSGKTYTLTRRFLELLGTAQQDGSTGPACTLSADGRHCWP-EILAATFTNRAATE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV+  +   +  + E   A               + A   + TIL   G L ++TI 
Sbjct: 69  MKERVVRRLKEMALRTGESPEA-----------PWTPALADRWVGTILRQYGALNIRTID 117

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN---EELKKAFYE 194
           +    +++   L+  +   F  A         E      L +   D+    + L++A   
Sbjct: 118 SLLTLLVRLSALDLRLPPDFEPA--FAGPDFFEPLLDDVLETARHDDPALRDMLRRACET 175

Query: 195 ILEISNDEDIET 206
           ++  ++ +   T
Sbjct: 176 LIHHTDHKGFAT 187


>gi|50311389|ref|XP_455719.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644855|emb|CAG98427.1| KLLA0F14234p [Kluyveromyces lactis]
          Length = 1064

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 47/178 (26%)

Query: 16  LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
            +S     Q  A   D T++  + A  G+GKT +L  R   L+L    +   ++  T T+
Sbjct: 9   YLSNLNDAQRKAVIYDYTKALQIIAGPGTGKTKVLTARFAYLVLSQKINAEEIIMTTFTR 68

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R++ ++ +                                      +P GLK
Sbjct: 69  KAAEEMKERLVPVLVSNGI-----------------------------------SPHGLK 93

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + T H+ C  ++++               +E+ ++   E  KS L  ++++  ++++ 
Sbjct: 94  IGTFHSICWKLLKEKGFLIG---------KEKIERATTEKIKSILEELIVEMPDQIRD 142


>gi|46578573|ref|YP_009381.1| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447984|gb|AAS94640.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232497|gb|ADP85351.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 719

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 41/166 (24%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            I+   +  + Q  A         V A AGSGKT  +V R+  LL      S++L LT T
Sbjct: 1   MIEFAKELNAAQYEAVTTLDGPVLVIAGAGSGKTRTVVYRLANLLERGVPASSILLLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM  R   ++                                           G+
Sbjct: 61  RKAANEMLQRASRLLGYGVQ--------------------------------------GI 82

Query: 132 KVQTIHAFCEAIMQQFPLEANITS-HFAIADEEQSKKLIEEAKKST 176
              T HAF  ++++Q+   A +      I D   S   I+  K + 
Sbjct: 83  AGGTFHAFAYSLLRQY-HPARLEGRDLTIMDGADSVAAIQHCKDAL 127


>gi|189424989|ref|YP_001952166.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189421248|gb|ACD95646.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 1082

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 44/157 (28%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               +Q    +  +   V+A  G+GKT  LV R+ RLL   A P  ++ +T T   A EM
Sbjct: 466 PNPEQQAAIQNDGQRVLVAAGPGTGKTFTLVSRLQRLLDQGADPGRVVAITFTTRTAEEM 525

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +   A                                      T   L + T H 
Sbjct: 526 RERLAKSCGA--------------------------------------TAEDLFIGTFHR 547

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           FC   ++Q            +   E  ++L++     
Sbjct: 548 FCLEQLRQD------NPGLTVVGPESRQRLLKRLYAE 578


>gi|291286461|ref|YP_003503277.1| exodeoxyribonuclease V, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883621|gb|ADD67321.1| exodeoxyribonuclease V, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1149

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMS 79
           K  +LL +  T ++ + ANAG+GKT+ +     R++    +P  ++L +T+T AA +++ 
Sbjct: 4   KQMELLTAPLTGTSLIEANAGTGKTYNITALFTRMVTELQYPVESILVVTYTNAAVSDLK 63

Query: 80  HRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
            ++ + +            S EI   +   +      K +++K   LL   +       +
Sbjct: 64  AKIYKRLNDVLLAMVSLRDSVEITMEDEFPLDYALKRKENLTKDIKLLKGAVRDFDQCAI 123

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH FC+ ++++     ++   + I     S++++++   +     +    +E  K   
Sbjct: 124 FTIHGFCQRMLKENAFSGHVA--YDIDLTGDSREILKKPVYNFWRENIYKMPQEAIKLLK 181

Query: 194 EI 195
            +
Sbjct: 182 SL 183


>gi|268323490|emb|CBH37078.1| putative ATP-dependent DNA helicase [uncultured archaeon]
 gi|268326506|emb|CBH40094.1| putative ATP-dependent DNA helicase [uncultured archaeon]
          Length = 615

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 48/217 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  ++ ++ +         V A+AGSGKT +L +RV  LL        +L LT T  A  
Sbjct: 5   IELSEKQEEIVFAENGPICVKASAGSGKTRVLTERVRYLL--GKTNKKVLALTFTNKAGE 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R                                       L  I E    + V T 
Sbjct: 63  EIKER---------------------------------------LSDIPEIEKRVFVGTF 83

Query: 137 HAFCEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKST---LASIMLDNNEELKKAF 192
           H FC+++++       +     I  DE    KL+E+A   T    A     + ++     
Sbjct: 84  HGFCKSMLENHGNLIGLAKMPHIFEDETDRLKLVEQAINQTPSYAAKYKRQDKKDQTNFR 143

Query: 193 YEILEISNDEDIETLISD--IISNRTALKLIFFFFSY 227
           Y +L   +      LI+D  +  +     ++  + +Y
Sbjct: 144 YHVLNFISKVK-RKLIADSELEQHTDDENIVLLYQNY 179


>gi|13508079|ref|NP_110028.1| DNA helicase II [Mycoplasma pneumoniae M129]
 gi|2495150|sp|P75438|Y340_MYCPN RecName: Full=Probable DNA helicase MPN_340
 gi|1674189|gb|AAB96144.1| DNA helicase II [Mycoplasma pneumoniae M129]
          Length = 529

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 54/212 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            + ++   +       V + AG+GKT ++ +R   L+     +P ++L  T T  AA+EM
Sbjct: 5   NQEQKAAVTCDNGVNVVYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDKAASEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++++I   S                                        L + T H+
Sbjct: 65  RQRIIKLIPQKSLQD-------------------------------------LHIYTFHS 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEE----------QSKKLIEEAKKSTLASIMLDNNEEL 188
           F    +Q+        S FAI  +              + + E  K+ +  + LD N E 
Sbjct: 88  FANRFLQKHGK-----SDFAILSDSNRFFSDYEMGDQLQTVVEIYKNKVVDLELD-NLEY 141

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKL 220
             AF +    + +ED  T+ +     R A  L
Sbjct: 142 NSAFRDACTDTFNEDFSTISNGQFRKRAATAL 173


>gi|68536698|ref|YP_251403.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
 gi|68264297|emb|CAI37785.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
          Length = 1205

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 21/174 (12%)

Query: 3   YHNSFQEHSETIDL-ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           +  S QE S+ +    + T  +  +  + P  +  V A AG+GKT  +  R + ++    
Sbjct: 6   HIFSPQELSQLMGQKFAPTDEQADVIQAGPFGNFLVVAGAGAGKTETMAARAVWMVANGY 65

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  +L LT T+ AAAE+  R+ + +   +       SA + ++    P +  +     
Sbjct: 66  ARPEQILGLTFTRKAAAELGERIRQRLQTLAG------SAFMDQLSADDPRREVLKNI-- 117

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                        V T  ++   I++++ L         +  + +   +  +  
Sbjct: 118 ----------APAVATYDSYAGDIVREYGLLIPSEPAARLITDAERWMVARDVV 161


>gi|194336513|ref|YP_002018307.1| exodeoxyribonuclease V, beta subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308990|gb|ACF43690.1| exodeoxyribonuclease V, beta subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1199

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLE 84
            A + +    + A+AG+GKT+ +    LRLLL        +L +T+T+AA  E+  R+  
Sbjct: 7   AAVELSGINLIEASAGTGKTYAIASLYLRLLLEKELLPEQILVVTYTEAATQELRGRIRS 66

Query: 85  IITAWSHLSDEILSAEITK-IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
            I     + +   +++I      +  + S M K R LL   L       + TIH FC  +
Sbjct: 67  RIREALEVMEGCDTSDIFLGELYETASLSGMKKVRDLLERALGAFDTASIFTIHGFCLRV 126

Query: 144 MQQFPLEANITSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           +Q    E+      ++ D E      +L+               +  L    Y +     
Sbjct: 127 LQDNAFESG-----SLYDTELVTDQTELLRGIVDDFWRVHFFGESAPLLG--YALRNRLT 179

Query: 201 DEDIETLISDI 211
            E   +L+ ++
Sbjct: 180 PETFLSLLKNL 190


>gi|227550044|ref|ZP_03980093.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227077890|gb|EEI15853.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 1096

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T+ +  +         V A AG+GKT  +  RV+ L+    A P  +L LT T+ AA E
Sbjct: 16  PTEQQADIIGADPGPLLVVAGAGAGKTETMAARVVWLVANGYARPEEVLGLTFTRKAAQE 75

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ + ++        +L+A    ++   P+       R +  T         V T  
Sbjct: 76  LGKRIRDRLS--------VLAANDALLRRLDPSGELADTLRVIAPT---------VATYD 118

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           ++   +++++ L   +  +  +  + +   +  E  
Sbjct: 119 SYAGDLVREYGLLVPVEPNARLITDAELHAIAHEVV 154


>gi|323143987|ref|ZP_08078641.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
 gi|322416236|gb|EFY06916.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
          Length = 765

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 41/167 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +          EQ  A   T     V A AG+GKT  L  R   LL A    P  +LC+T
Sbjct: 4   KLARFKEDLNEEQYKAVCTTEGYLRVLAGAGTGKTKTLAYRYAYLLTALGMSPKAVLCVT 63

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            +  A+ EM  R+ ++    +                                       
Sbjct: 64  FSNKASREMRCRINKLCGDIALPY------------------------------------ 87

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              V T HAFC  ++++     +   +F + D    K++++   KS 
Sbjct: 88  ---VTTFHAFCCDLLREDIHALSFVKNFTVIDVSDVKEVLKPIFKSL 131


>gi|227486915|ref|ZP_03917231.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092989|gb|EEI28301.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 1228

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 26/160 (16%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           +  E +  +     T  +Q +   P  +  V A AG+GKT  +  RV+ L+      P  
Sbjct: 4   TANELAHQVGGFPPTPQQQAVIEYPMHNLLVVAGAGAGKTKTMADRVVWLVANGLVRPEQ 63

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA  +  ++   +                             K +   +  
Sbjct: 64  VLGLTFTRKAAQNLKQKIRSSLFDLH------------------------QKVQGQSVRA 99

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
            E      V T  A+ + +++++ L         I  + +
Sbjct: 100 EENLD-ASVFTYDAYAQNLVREYGLLLPTEPGSRIISQAE 138


>gi|71274634|ref|ZP_00650922.1| UvrD/REP helicase [Xylella fastidiosa Dixon]
 gi|71899654|ref|ZP_00681808.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
 gi|71164366|gb|EAO14080.1| UvrD/REP helicase [Xylella fastidiosa Dixon]
 gi|71730606|gb|EAO32683.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
          Length = 1242

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 46/191 (24%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +   V RL++        +L +T T+AA  E+  R+ E +   + L 
Sbjct: 18  LIEASAGTGKTFTMATLVTRLVVERGWRIGHILAVTFTEAATQELRTRIRERLILAARLV 77

Query: 94  DEI------LSAEITKIQGKKPNKSDMSKA----------------------RHLLITIL 125
            +       L +   ++    P+  D  +                       R  L    
Sbjct: 78  PQAAELPVPLPSAQPQMSHPTPHPQDAPRITPGVTNSASPEPPDVVLTLQILRTHLAATD 137

Query: 126 ETPGGL--------------KVQTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKL 168
           ETP  L               + TIH FC  ++++  L      I      +D +   +L
Sbjct: 138 ETPHALHSRLQQAADEIDLAAIFTIHGFCTRVLREHALHTGQSFIPPTLLASDRDLLHEL 197

Query: 169 IEEAKKSTLAS 179
             +  +  +A 
Sbjct: 198 AADIWRQEIAD 208


>gi|28199529|ref|NP_779843.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa Temecula1]
 gi|182682264|ref|YP_001830424.1| UvrD/REP helicase [Xylella fastidiosa M23]
 gi|28057644|gb|AAO29492.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa Temecula1]
 gi|182632374|gb|ACB93150.1| UvrD/REP helicase [Xylella fastidiosa M23]
          Length = 1243

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 46/191 (24%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +   V RL++        +L +T T+AA  E+  R+ E +   + L 
Sbjct: 18  LIEASAGTGKTFTMATLVTRLVVERGWRIGHILAVTFTEAATQELRTRIRERLILAARLV 77

Query: 94  DEI------LSAEITKIQGKKPNKSDMSKA----------------------RHLLITIL 125
            +       L +   ++    P+  D  +                       R  L    
Sbjct: 78  PQAAELPVPLPSAQPQMSHPTPHPQDAPRITPGVTNSASPEPPDVVLTLQILRTHLAATD 137

Query: 126 ETPGGL--------------KVQTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKL 168
           ETP  L               + TIH FC  ++++  L      I      +D +   +L
Sbjct: 138 ETPHALHSRLQQAADEIDLAAIFTIHGFCTRVLREHALHTGQSFIPPTLLASDRDLLHEL 197

Query: 169 IEEAKKSTLAS 179
             +  +  +A 
Sbjct: 198 AADIWRQEIAD 208


>gi|227541923|ref|ZP_03971972.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182366|gb|EEI63338.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1228

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 26/160 (16%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           +  E +  +     T  +Q +   P  +  V A AG+GKT  +  RV+ L+      P  
Sbjct: 4   TANELAHQVGGFPPTPQQQAVIEYPMHNLLVVAGAGAGKTKTMADRVVWLVANGLVRPEQ 63

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA  +  ++   +                             K +   +  
Sbjct: 64  VLGLTFTRKAAQNLKQKIRSSLFDLH------------------------QKVQGQSVRA 99

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
            E      V T  A+ + +++++ L         I  + +
Sbjct: 100 EENLD-ASVFTYDAYAQNLVREYGLLLPTEPGSRIISQAE 138


>gi|325263244|ref|ZP_08129979.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium sp. D5]
 gi|324031637|gb|EGB92917.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium sp. D5]
          Length = 1090

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 44/161 (27%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +    EQ  A     S   V A  G+GKT  L+ R+L +L +    PS +  +T T  AA
Sbjct: 484 ADLNQEQKQAVRALGSAVAVVAGPGTGKTKTLISRILYMLEVRKVKPSEITAVTFTNKAA 543

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+ + I                             ++R+L          ++V T
Sbjct: 544 GELMERIKKEIG----------------------------RSRNL--------NKMQVGT 567

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            HA C   ++   +E      F++AD+  S +    A   T
Sbjct: 568 FHAICLNFLKNQGVE------FSLADDAASLEAAGRALDET 602


>gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
 gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
          Length = 855

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 40/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ + +   ++  + ++AG+GKT  L  R+  ++  N      +LCLT T  A  EM
Sbjct: 7   NDKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEM 66

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +++E +                                            + V+T H+
Sbjct: 67  KEKIIETVGKEGL--------------------------------------KVTVKTFHS 88

Query: 139 FCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172
           FC  ++++   +  +I+  F I DEE +K++I E 
Sbjct: 89  FCFDVIKKEAKKNTDISFDFTIYDEEYTKEIISEL 123


>gi|126455228|ref|YP_001065663.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|242316641|ref|ZP_04815657.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|126228870|gb|ABN92410.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|242139880|gb|EES26282.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1106b]
          Length = 1270

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|170730900|ref|YP_001776333.1| exodeoxyribonuclease V subunit beta [Xylella fastidiosa M12]
 gi|167965693|gb|ACA12703.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa M12]
          Length = 1242

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 46/191 (24%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +   V RL++        +L +T T+AA  E+  R+ E +   + L 
Sbjct: 18  LIEASAGTGKTFTMATLVTRLVVERGWRIGHILAVTFTEAATQELRTRIRERLILAARLV 77

Query: 94  DEI------LSAEITKIQGKKPNKSDMSKA----------------------RHLLITIL 125
            +       L +   ++    P+  D  +                       R  L    
Sbjct: 78  PQAAELPVPLPSAQPQMSHPTPHPQDAPRITPGVTNSASPEPPDVVLTLQILRTHLAATD 137

Query: 126 ETPGGL--------------KVQTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKL 168
           ETP  L               + TIH FC  ++++  L      I      +D +   +L
Sbjct: 138 ETPHALHSRLQQAADEIDLAAIFTIHGFCTRVLREHALHTGQSFIPPTLLASDRDLLHEL 197

Query: 169 IEEAKKSTLAS 179
             +  +  +A 
Sbjct: 198 AADIWRQEIAD 208


>gi|270264227|ref|ZP_06192494.1| ATP-dependent DNA helicase rep [Serratia odorifera 4Rx13]
 gi|270041876|gb|EFA14973.1| ATP-dependent DNA helicase rep [Serratia odorifera 4Rx13]
          Length = 655

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 38/144 (26%)

Query: 37  SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
            A AGSGKT ++  ++  L+         +  +T T  AA EM  RV + +         
Sbjct: 2   LAGAGSGKTRVITNKIAHLIHNCGYQARHIAAVTFTNKAAREMKERVAQTMGR------- 54

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                               +AR           GL + T H     I+++      + S
Sbjct: 55  -------------------KEAR-----------GLMISTFHTLGLEIIKREYAALEMKS 84

Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179
           +F++ D++    L++E  +  L +
Sbjct: 85  NFSLFDDQDQLALLKELTEKWLEN 108


>gi|120402221|ref|YP_952050.1| exodeoxyribonuclease V subunit beta [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955039|gb|ABM12044.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           vanbaalenii PYR-1]
          Length = 1097

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 12/194 (6%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLT 69
            E  DL+    +       P  +  + A+AG+GKT  L   V R +         +L +T
Sbjct: 1   MEPFDLLGPLPA-------PRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDQMLLIT 53

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILET 127
             +AA+ E+  RV   I       D+   A   +I       S   +++ R  L   L  
Sbjct: 54  FGRAASQELRERVRAQILDALRAFDDPSHAADNEIVAHLLTGSHGELTERRQRLRDALAG 113

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                + T H FC+ +++   +  +  S   + +      L+ E       +    +++E
Sbjct: 114 FDAATIATTHQFCQLVLRSLGVAGDTDSGVELVESLD--DLVTEIVDDLYLAHFGQDHDE 171

Query: 188 LKKAFYEILEISND 201
               + + L ++ +
Sbjct: 172 PLLTYADALSLARE 185


>gi|330431882|gb|AEC16941.1| ATP-dependent DNA helicase Rep [Gallibacterium anatis UMN179]
          Length = 670

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 43/187 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +   K +Q   +       V A AGSGKT +++ ++  L+   N  P+ +  +T T  AA
Sbjct: 1   MKLNKQQQQAVTTIDTPCLVLAGAGSGKTRVIINKIAYLIEHCNYSPNKIAAVTFTNKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  RV   I                                      ++   GL V T
Sbjct: 61  REMKERVAHSIG-------------------------------------VKQSKGLTVCT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H      +++     +      + DE     L++E     L  I    +++    F   
Sbjct: 84  FHTLGFDFVKKEHQALSFKPSITLFDEHDQLALLKE-----LTKISFQEDKDKLNQFINY 138

Query: 196 LEISNDE 202
           + +  + 
Sbjct: 139 ISLCKNN 145


>gi|134283868|ref|ZP_01770565.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           305]
 gi|134244856|gb|EBA44953.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           305]
          Length = 1270

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|46580467|ref|YP_011275.1| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449886|gb|AAS96535.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234209|gb|ADP87063.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 1152

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 35/192 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLL----------------LANAH--PSTLLCLTHTKAAAAE 77
           + A+AGSGKT+ L +R L LL                    H  P  +L  T T  AA E
Sbjct: 10  IKASAGSGKTYTLTRRFLELLGTAQQDGSTGPACTLSADGRHCWP-EILAATFTNRAATE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV+  +   +  + E   A               + A   + TIL   G L ++TI 
Sbjct: 69  MKERVVRRLKEMALRTGESPEA-----------PWTPALADRWVGTILRQYGALNIRTID 117

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN---EELKKAFYE 194
           +    +++   L+  +   F  A         E      L +   D+    + L++A   
Sbjct: 118 SLLTLLVRLSALDLRLPPDFEPA--FAGPDFFEPLLDDVLETARHDDPALRDMLRRACET 175

Query: 195 ILEISNDEDIET 206
           ++  ++ +   T
Sbjct: 176 LIHHTDHKGFAT 187


>gi|307637600|gb|ADN80050.1| ATP-dependent DNA helicase [Helicobacter pylori 908]
 gi|325997789|gb|ADZ49997.1| ATP-dependent DNA helicase [Helicobacter pylori 2017]
          Length = 678

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     ++  AS       + A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQRKAASALQGHNLIIASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALN 123


>gi|237811673|ref|YP_002896124.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|237504018|gb|ACQ96336.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           MSHR346]
          Length = 1260

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|152990757|ref|YP_001356479.1| ATP-dependent DNA helicase UvrD [Nitratiruptor sp. SB155-2]
 gi|151422618|dbj|BAF70122.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp.
           SB155-2]
          Length = 671

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 83/229 (36%), Gaps = 25/229 (10%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + L +    +   A+  +    V A+AG+GKT  +V R+  LL     P  +L LT T  
Sbjct: 1   MPLSTLNPEQLAAATAKSGYNLVIASAGTGKTSTIVARIAYLLQQGIEPKKILLLTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM  RV  +    +   +      ++    K  N   + K    L  + ++      
Sbjct: 61  AAAEMIARVERVFGKKAKEIEAGTFHAVSYRWLKSLNPKVVLKQPKELKMLFKSIYEK-- 118

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-----------KKSTLASIML 182
                      + F L ++    +A +       L + +           K+S   S+  
Sbjct: 119 -----------RDFSLVSDTKP-YAASTLFDLYSLYQNSEFEISFGKWIGKRSDEQSVFG 166

Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
              +++ + + E+ +         L+   I N+ AL+  +      ++ 
Sbjct: 167 AVYDDIVQEYEEMKDEYGFLSFNDLLLQAIRNKDALQTFYEVLVDEYQD 215


>gi|319442809|ref|ZP_07991965.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
           DSM 44702]
          Length = 1179

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 41/212 (19%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  +   P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA E
Sbjct: 24  PTDQQAAVIGAPAGPMLVVAGAGAGKTETMAARVVWLVANGLVLPEQVLGLTFTRKAARE 83

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+   + + +          IT                              V T  
Sbjct: 84  LGVRIRARLQSLASSGLVESMPAITP----------------------------TVSTYD 115

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS------------TLASIMLDNN 185
           +F   I++++ L         +  + +   +  +                T+   ML+ N
Sbjct: 116 SFAGDIVREYGLLLPTEPTGRVITDTERWMIARDVVLERSTGFTTHRSVPTIIDDMLELN 175

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTA 217
           + +        ++ ++        D + +R  
Sbjct: 176 DGMDNHLATFTDVDDECRATAAEIDGLPDRDG 207


>gi|53718918|ref|YP_107904.1| putative exodeoxyribonuclease V subunit beta [Burkholderia
           pseudomallei K96243]
 gi|52209332|emb|CAH35277.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei K96243]
          Length = 1270

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|254180283|ref|ZP_04886882.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1655]
 gi|184210823|gb|EDU07866.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1655]
          Length = 1270

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|71279749|ref|YP_269480.1| exodeoxyribonuclease V subunit beta [Colwellia psychrerythraea 34H]
 gi|71145489|gb|AAZ25962.1| exodeoxyribonuclease V, beta subunit [Colwellia psychrerythraea
           34H]
          Length = 1286

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 7/184 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-P 62
           S  + + T D   +   + L A+  + T    + A+AG+GKT+ + +  LRLLL      
Sbjct: 7   SDSQQTATKDNHQEVTLQNLDAATIELTGKHLIEASAGTGKTYNITRIYLRLLLERELTV 66

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T TK A  E+  R+   I       D +   +          + +  +   LL 
Sbjct: 67  EQILLMTFTKDATQELRGRIDAFIRLALSDWDSLCLKD--AYFATLAQRIEKKQREFLLK 124

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
             L       + TIH FC+ ++ Q+   + +  +  +A       L  +  +    S+  
Sbjct: 125 RALLFLDEAAIFTIHGFCQRVLNQYAFTSGLPFNANMAANSSEITL--QVCQDWYRSLAK 182

Query: 183 DNNE 186
            ++E
Sbjct: 183 SDHE 186


>gi|76811844|ref|YP_332924.1| exodeoxyribonuclease V subunit beta [Burkholderia pseudomallei
           1710b]
 gi|76581297|gb|ABA50772.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1710b]
          Length = 1934

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 691 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 750

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 751 TGDGGGDPFIARLFETTLAPGRGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 808


>gi|254197985|ref|ZP_04904407.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           S13]
 gi|169654726|gb|EDS87419.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           S13]
          Length = 1270

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|268680032|ref|YP_003304463.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618063|gb|ACZ12428.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 676

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 36/216 (16%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              ++  A+ P+    + A+AG+GKT  +V R+  LL     PS +L LT T  AAAEM 
Sbjct: 7   NTEQKSAATAPSGYNLIIASAGTGKTSTIVARLAYLLKNGVAPSKILLLTFTNKAAAEMI 66

Query: 80  HRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            RV       I +     +   +S  + K  G           + LL +I+E        
Sbjct: 67  ERVSAFFPQSITSQIESGTFHAVSYRLLKKMGSNIVLKQPKDLKILLKSIVER------- 119

Query: 135 TIHAFCEAIMQQF-PLEANITSH--------FAIADEEQSKKLIEEAKKSTLAS--IMLD 183
                     ++F  +E+ + ++        F++       +   +  +   +   +  D
Sbjct: 120 ----------RRFDHIESGVKAYSAQYLYDLFSLYQNSTVTQSFTQWLEENDSEHGVFFD 169

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALK 219
             E++ + F  +       D   L+  +   R ALK
Sbjct: 170 IYEDIFEEFQALKREFGYVDFNDLLIFM---REALK 202


>gi|217423556|ref|ZP_03455057.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           576]
 gi|217393414|gb|EEC33435.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           576]
          Length = 1270

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|330941325|gb|EGH44183.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 650

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 38/141 (26%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A AGSGKT ++ +++  L+         ++ +T T  AA EM  RV  ++       
Sbjct: 1   MVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREMKERVGTLLRGSEGR- 59

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                               GL V T H     I+++       
Sbjct: 60  ------------------------------------GLTVSTFHNLGLNIIRKEHTRLGY 83

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
              F+I DE   K L+ +  +
Sbjct: 84  KPGFSIFDETDVKALMTDIMQ 104


>gi|312214725|emb|CBX94679.1| similar to ATP-depentend DNA helicase [Leptosphaeria maculans]
          Length = 1044

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 40/170 (23%)

Query: 9   EHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
             S  +D + +    +++   + P     V A  GSGKT  L  RV   +      P  +
Sbjct: 20  RFSVLMDALLEGLNHAQKNAVTSPANVVQVLAPPGSGKTKTLTARVAYHINHERLQPWNI 79

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +  T T  AA EM  R+   +                          D  +A+ +L    
Sbjct: 80  IVCTFTIKAAKEMKDRIKGFVG-------------------------DKLEAKLIL---- 110

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                    T H+     + ++  E  I  +F IAD   S  +I+   K 
Sbjct: 111 --------GTFHSVARRFLSRYGQEIGIDKNFGIADASDSSAIIKRIIKR 152


>gi|224437627|ref|ZP_03658580.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
 gi|313144079|ref|ZP_07806272.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
 gi|313129110|gb|EFR46727.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
          Length = 698

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L S    ++  A+    +  + A AGSGKT  L  R+  L+      PS  L LT T  A
Sbjct: 10  LQSLNPKQKEAATHIDGALLILAGAGSGKTKTLTTRLAYLINEVGIPPSATLTLTFTNKA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R                                   A  LL    + P  L   
Sbjct: 70  AQEMRDR-----------------------------------ALSLLSNAYQAPPLL--C 92

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H F    ++ +       ++F + D +  K +++   K+ 
Sbjct: 93  TFHKFGLLFLRFYIKVLEREANFVVLDSDDKKAILKSLSKAL 134


>gi|325996193|gb|ADZ51598.1| ATP-dependent DNA helicase [Helicobacter pylori 2018]
          Length = 403

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     ++  AS       + A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQRKAASALQGHNLIIASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALN 123


>gi|226198600|ref|ZP_03794166.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929343|gb|EEH25364.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
          Length = 1270

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|290242989|ref|YP_003494659.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945494|gb|ADC73192.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 704

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 36/171 (21%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D +     ++  A      A + A AG+GKT  L +R  R+L +  HP  LL LT ++ 
Sbjct: 1   MDDVVLDPQQETAAQIVEGPALILAGAGAGKTATLTERTARMLESGHHPENLLMLTFSRK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ + +                            ++ R  L T         +
Sbjct: 61  AAREMYARLRDRLD---------------------------TQDRKALPT---------I 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +  H+F   ++Q  P      S  ++ D    KK +    K        ++
Sbjct: 85  ENFHSFGWKLLQSNPTRCQRKSGVSLMDANDQKKELRRLHKDLADDAFRED 135


>gi|53724197|ref|YP_103384.1| exodeoxyribonuclease V subunit beta [Burkholderia mallei ATCC
           23344]
 gi|121599132|ref|YP_992524.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei SAVP1]
 gi|124385391|ref|YP_001026675.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126449813|ref|YP_001080042.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|167004431|ref|ZP_02270189.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei PRL-20]
 gi|254178330|ref|ZP_04884985.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|254200341|ref|ZP_04906707.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei FMH]
 gi|254358920|ref|ZP_04975193.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei
           2002721280]
 gi|52427620|gb|AAU48213.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|121227942|gb|ABM50460.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei SAVP1]
 gi|124293411|gb|ABN02680.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126242683|gb|ABO05776.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|147749937|gb|EDK57011.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei FMH]
 gi|148028047|gb|EDK86068.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei
           2002721280]
 gi|160699369|gb|EDP89339.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|243060257|gb|EES42443.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei PRL-20]
          Length = 1270

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|317132106|ref|YP_004091420.1| UvrD/REP helicase [Ethanoligenens harbinense YUAN-3]
 gi|315470085|gb|ADU26689.1| UvrD/REP helicase [Ethanoligenens harbinense YUAN-3]
          Length = 782

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 64/204 (31%), Gaps = 84/204 (41%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL----------------------- 53
           ++  + + +LA+       V A AGSGKT +LV RV                        
Sbjct: 22  MNDRQRQAVLAT--QGPLLVLAGAGSGKTTVLVNRVACILKYGAAYESDAVPSGLTAEDL 79

Query: 54  ------------------RLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
                              LL  +A PS  LL +T T  AA EM  R+ +++        
Sbjct: 80  SYLQNCLAQRSFGDERLRELLAVDAPPSWALLAITFTNKAAGEMKSRLEQMLG------- 132

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP--LEAN 152
                                          E    +   T H+ C  I+++    LE  
Sbjct: 133 -------------------------------EQALDIWACTFHSACSRILRREIDKLELG 161

Query: 153 ITSHFAIADEEQSKKLIEEAKKST 176
            +  F I D + S +++ E  +  
Sbjct: 162 YSRSFTIYDTDDSLRVLRECCRDV 185


>gi|257466899|ref|ZP_05631210.1| DNA helicase II [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918046|ref|ZP_07914286.1| DNA helicase II [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691921|gb|EFS28756.1| DNA helicase II [Fusobacterium gonidiaformans ATCC 25563]
          Length = 901

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 41/196 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K++Q +         V A  GSGKT  LV+R + L+     +PS +L  T T+ AA E+
Sbjct: 3   DKNQQRVVEHTEGPLLVIAGPGSGKTKTLVERSVYLISEKKVNPSQILLSTFTEKAAREL 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + +                               ++L ++I E   G    T+H+
Sbjct: 63  RMRIQKALQK-----------------------------KNLSVSIEEMYLG----TMHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I++++   ++  +   I DEE+ K  +    +          N      F+E    
Sbjct: 90  IWLRILEEYIEYSHYENGIEILDEEEEKFFLYSQLRQF-------KNLNFYGEFFEREHS 142

Query: 199 SNDEDIETLISDIISN 214
             D     L+  I + 
Sbjct: 143 YGDWAQSRLLQTIFAK 158


>gi|257451434|ref|ZP_05616733.1| DNA helicase II [Fusobacterium sp. 3_1_5R]
 gi|317058014|ref|ZP_07922499.1| DNA helicase II [Fusobacterium sp. 3_1_5R]
 gi|313683690|gb|EFS20525.1| DNA helicase II [Fusobacterium sp. 3_1_5R]
          Length = 901

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 41/196 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K++Q +         V A  GSGKT  LV+R + L+     +PS +L  T T+ AA E+
Sbjct: 3   DKNQQRVVEHTEGPLLVIAGPGSGKTKTLVERSVYLISEKKVNPSQILLSTFTEKAAREL 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + +                                        +   + + T+H+
Sbjct: 63  RMRIQKALQK---------------------------------KNFSVSIEEMYLGTMHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I++++   ++  +   I DEE+ K  +    +          N      F+E    
Sbjct: 90  IWLRILEEYIEYSHYENGIEILDEEEEKFFLYSQLRQF-------KNLNFYGEFFEREHS 142

Query: 199 SNDEDIETLISDIISN 214
             D     L+  I S 
Sbjct: 143 YGDWTQSRLLQTIFSK 158


>gi|303276258|ref|XP_003057423.1| ATP-dependent DNA helicase [Micromonas pusilla CCMP1545]
 gi|226461775|gb|EEH59068.1| ATP-dependent DNA helicase [Micromonas pusilla CCMP1545]
          Length = 851

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 55/156 (35%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPST--------------LLCLTHTKAAAAEMSH 80
           V A  GSGKT +LV RV  L+      PS               +LC+T T  AA EM  
Sbjct: 139 VLAGPGSGKTRVLVGRVTHLINELGVPPSQVRSIHWSPYDRVGVILCITFTNKAAKEMKE 198

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R++  +                                      +E    +   T H+  
Sbjct: 199 RLVANVG-------------------------------------VENAKAITAGTFHSVA 221

Query: 141 EAIMQQ--FPLE-ANITSHFAIADEEQSKKLIEEAK 173
             ++++    LE     + F I DE  +K L+ +  
Sbjct: 222 ARMLRKDVHALENYGRGNDFVIYDETDTKALLRKIL 257


>gi|126441299|ref|YP_001058429.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           668]
 gi|126220792|gb|ABN84298.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           668]
          Length = 1263

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|24213666|ref|NP_711147.1| exodeoxyribonuclease V subunit beta [Leptospira interrogans serovar
           Lai str. 56601]
 gi|24194474|gb|AAN48165.1| exodeoxyribonuclease V beta chain [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 1046

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 36/159 (22%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +S+++ A+AG+GKT+ +++ V+ L+L +  P + +L LT+T+ AA E+  R+ + + +  
Sbjct: 10  KSSFIEASAGTGKTYTIMEIVIDLILEHKIPLTQILILTYTEKAAGELKERLRKKLISSG 69

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +                      AR L          + + TIH FC  I++++P+E
Sbjct: 70  LTKE----------------------AREL--------DQVTISTIHGFCNTILKEYPVE 99

Query: 151 ANITSHFAIADEEQSK-----KLIEEAKKSTLASIMLDN 184
               +++ + D  +       KL  E   S +    L++
Sbjct: 100 TETHTNWILTDALERLNIALYKLQHEEWNSWVDPEKLED 138


>gi|254298121|ref|ZP_04965574.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           406e]
 gi|157807178|gb|EDO84348.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           406e]
          Length = 1270

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|310799549|gb|EFQ34442.1| UvrD/REP helicase [Glomerella graminicola M1.001]
          Length = 988

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 38/162 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +   ++    +    +  + A  GSGKTH L  RV+ LL      P+ ++  T T  +
Sbjct: 15  LATLNPAQCRAVTSKASTVAILAGPGSGKTHTLASRVVWLLDNVGYAPADIVVATFTVKS 74

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ + +                             + + +++            
Sbjct: 75  AREMKERITKALGD--------------------------DRGKKIVL-----------G 97

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+     +  +     +   FAIAD+  S+ +I+   K  
Sbjct: 98  TFHSIARRYLAAYGKRIGLDEKFAIADDADSRSIIQRICKRL 139


>gi|126667776|ref|ZP_01738743.1| ATP-dependent DNA helicase [Marinobacter sp. ELB17]
 gi|126627724|gb|EAZ98354.1| ATP-dependent DNA helicase [Marinobacter sp. ELB17]
          Length = 698

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 43/182 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            I  T+ +  +AS       V A AGSGKT  LV R  RL+  +  P  +L  T ++ AA
Sbjct: 6   GIPLTEQQNAIASHKDGPMIVLAGAGSGKTATLVARTGRLIDQHISPRNILITTFSRKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+ E                                              ++V T
Sbjct: 66  TEIKKRLSEQFGM--------------------------------------NGDDVRVDT 87

Query: 136 IHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE---ELKK 190
            H      MQ +     I    ++AI       +++ E  K       ++      +LK+
Sbjct: 88  FHGMGYRFMQDYKNLFGITEDQNWAIMTSNDQGRMLNEIAKDVAEKSNIEFKAIRKDLKE 147

Query: 191 AF 192
            F
Sbjct: 148 GF 149


>gi|32266430|ref|NP_860462.1| ATP-dependent DNA helicase [Helicobacter hepaticus ATCC 51449]
 gi|32262480|gb|AAP77528.1| ATP-dependent DNA helicase [Helicobacter hepaticus ATCC 51449]
          Length = 676

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 17  ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +SQ  ++Q   A+  +    + A+AG+GKT  +V R+  LL     P  +L LT T  A+
Sbjct: 3   LSQLNAQQAEAATASSGHNLIIASAGTGKTATIVGRIAYLLNQGYAPQDILLLTFTNKAS 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ +I       + E  +      +  + ++    K    L  + ++    ++ T
Sbjct: 63  SEMLARIGKIFGENLAKNIESGTFHAVAYRFLREHQHIHLKQPKELQMLFKSLYDKRIFT 122


>gi|302330242|gb|ADL20436.1| Putative helicase [Corynebacterium pseudotuberculosis 1002]
          Length = 1074

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 75/187 (40%), Gaps = 23/187 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  +         V A AG+GKT  +  RV+ L+  N A+P  +L LT T+ AA +
Sbjct: 17  PTPQQAAVIGAELEPMLVVAGAGAGKTETMAARVVWLVANNIANPDRILGLTFTRKAAQQ 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +S R+   +   + +           ++   P+     K   +  T         V T  
Sbjct: 77  LSQRIRGRLEQLAGMD---------ALRDIDPSGELSYKLEAIAPT---------VSTYD 118

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA-SIMLDNNEELKKAFYEIL 196
           ++  ++++++ L   +     +  E +   L + A    +  S  LD   +   A  ++L
Sbjct: 119 SYAGSLIREYGLLLPVEPTSRLITETE---LFQIAYDIVINYSGSLDTQTQPVNATEKLL 175

Query: 197 EISNDED 203
            + ++ D
Sbjct: 176 SLVSEID 182


>gi|167836128|ref|ZP_02463011.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           MSMB43]
          Length = 529

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGNDGGDPFVARLFETTLAPERGLDPETAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|167587569|ref|ZP_02379957.1| exodeoxyribonuclease V, beta subunit [Burkholderia ubonensis Bu]
          Length = 898

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL        +L +T TKAA AE+  R+   +   +H  D
Sbjct: 26  IEASAGTGKTWNICALYVRLLLEKDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A +           D   A   +   L       + TIHAFC+  +Q+
Sbjct: 86  TGDDGGDPFIARLVDTTLGDGGVLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143


>gi|302205690|gb|ADL10032.1| Putative UvrD-helicase [Corynebacterium pseudotuberculosis C231]
 gi|308275925|gb|ADO25824.1| Putative helicase [Corynebacterium pseudotuberculosis I19]
          Length = 1074

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 75/187 (40%), Gaps = 23/187 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  +         V A AG+GKT  +  RV+ L+  N A+P  +L LT T+ AA +
Sbjct: 17  PTPQQAAVIGAELEPMLVVAGAGAGKTETMAARVVWLVANNIANPDRILGLTFTRKAAQQ 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +S R+   +   + +           ++   P+     K   +  T         V T  
Sbjct: 77  LSQRIRGRLEQLAGMD---------ALRDIDPSGELSYKLEAIAPT---------VSTYD 118

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA-SIMLDNNEELKKAFYEIL 196
           ++  ++++++ L   +     +  E +   L + A    +  S  LD   +   A  ++L
Sbjct: 119 SYAGSLIREYGLLLPVEPTSRLITETE---LFQIAYDIVINYSGSLDTQTQPVNATEKLL 175

Query: 197 EISNDED 203
            + ++ D
Sbjct: 176 SLVSEID 182


>gi|283795947|ref|ZP_06345100.1| UvrD/REP helicase [Clostridium sp. M62/1]
 gi|291076588|gb|EFE13952.1| UvrD/REP helicase [Clostridium sp. M62/1]
          Length = 1133

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 43/157 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
              ++  A+ P RS  V A  G+GKT  L  R+  LL +    PS +  +T TK AA E+
Sbjct: 514 NPEQRRAAAVPARSMAVIAGPGTGKTGTLTARIRCLLEVRRVRPSEITAVTFTKRAAEEL 573

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +                                        T   ++  T H+
Sbjct: 574 RERLKREMPR------------------------------------HRTISRIQTGTFHS 597

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            C ++++Q  +E      F +AD  +  +L  +  K 
Sbjct: 598 LCYSMLRQTGVE------FELADSLELTELASDVLKE 628


>gi|254188292|ref|ZP_04894803.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254260700|ref|ZP_04951754.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1710a]
 gi|157935971|gb|EDO91641.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254219389|gb|EET08773.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           1710a]
          Length = 1270

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDGGGDPFIARLFETTLAPGRGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|221145759|gb|ACL99766.1| UvrD-like protein [Plasmodium falciparum]
          Length = 693

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 80/191 (41%), Gaps = 15/191 (7%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + ++ +Q +   P   +  + A  GSGKT  L  R+++ ++      +++C+T T  AA+
Sbjct: 1   NFSEEQQRIIEIPMNVNLCIIACPGSGKTSTLTARIIKSIIEEK--QSIVCITFTNYAAS 58

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL----- 131
           ++  ++++ I     +  +    +             +     L   + ++   +     
Sbjct: 59  DLKDKIMKKINCLIDICVDNKINQKLFNNKNNKINFSLKNKCTLNNKMNKSIFKVLNTVT 118

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            + TIH+FC  I+ ++         F I  +  +  +I+ A  +  +S+M       +  
Sbjct: 119 FIGTIHSFCRYILYKY------KGTFKILTDFINTNIIKLAFNNFYSSMMSKTKGT-QPG 171

Query: 192 FYEILEISNDE 202
           F  ILE  +++
Sbjct: 172 FSTILERKSNK 182


>gi|149376225|ref|ZP_01893989.1| ATP-dependent DNA helicase Rep [Marinobacter algicola DG893]
 gi|149359422|gb|EDM47882.1| ATP-dependent DNA helicase Rep [Marinobacter algicola DG893]
          Length = 654

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 41/168 (24%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             V A AGSGKT ++ ++V  L+     P   +  +T T  AA EM  RV  ++      
Sbjct: 1   MLVLAGAGSGKTSVITRKVAYLIEHLGIPGRHIAAVTFTNKAAREMKERVGRLVDRKLTR 60

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                                GL V T H     ++++      
Sbjct: 61  -------------------------------------GLIVSTFHNLGLNMIREEHEHLG 83

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
               F+I D E +K L+++     +     D  +EL      I    N
Sbjct: 84  YHPGFSIFDAEDAKALLQDLM---MREASADAGDELSDVQMTISSWKN 128


>gi|300857961|ref|YP_003782944.1| hypothetical protein cpfrc_00543 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685415|gb|ADK28337.1| hypothetical protein cpfrc_00543 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 1074

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 75/187 (40%), Gaps = 23/187 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  +         V A AG+GKT  +  RV+ L+  N A+P  +L LT T+ AA +
Sbjct: 17  PTPQQAAVIGAELEPMLVVAGAGAGKTETMAARVVWLVANNIANPDRILGLTFTRKAAQQ 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +S R+   +   + +           ++   P+     K   +  T         V T  
Sbjct: 77  LSQRIRGRLEQLAGMD---------ALRDIDPSGELSYKLEAIAPT---------VSTYD 118

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA-SIMLDNNEELKKAFYEIL 196
           ++  ++++++ L   +     +  E +   L + A    +  S  LD   +   A  ++L
Sbjct: 119 SYAGSLIREYGLLLPVEPTSRLITETE---LFQIAYDIVINYSGSLDTQTQPVNATEKLL 175

Query: 197 EISNDED 203
            + ++ D
Sbjct: 176 SLVSEID 182


>gi|242808279|ref|XP_002485129.1| ATP-depentend DNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218715754|gb|EED15176.1| ATP-depentend DNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1033

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 53/164 (32%), Gaps = 41/164 (25%)

Query: 17  ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTK 72
           ++   + Q  A     S   V A  GSGKT  L  RV  LL +  H   P  ++C T T 
Sbjct: 7   LNGLNAAQRTAVTSPTSVLQVLAPPGSGKTKTLTARVAYLLSSKHHGFRPQDVICCTFTI 66

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+ EM  R+  +I                                       +    L 
Sbjct: 67  KASREMRERLSHLIGD-------------------------------------QVVSKLV 89

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + T H+ C   +  +     +   F IAD   S  +I+   K  
Sbjct: 90  LGTFHSICRRYLVAYGHLIGLKKGFGIADSNDSLTIIKRIIKRL 133


>gi|315635996|ref|ZP_07891256.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479717|gb|EFU70390.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 182

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + L +  + +   A+       + A+AG+GKT  +V R+  LL +  +P  +L LT T  
Sbjct: 19  MPLSNLNQEQLQAATCHQGFNLIIASAGTGKTSTIVGRIAYLLNSGINPKEILLLTFTNK 78

Query: 74  AAAEMSHRVLEIIT-----AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           AAAEM +RV +             +   +S ++ K           ++ + L  +I E
Sbjct: 79  AAAEMINRVAKFFGKDIAKEIMAGTFHSVSYKLLKELNVNITLKQPNELKTLFKSIYE 136


>gi|300857964|ref|YP_003782947.1| hypothetical protein cpfrc_00546 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300685418|gb|ADK28340.1| hypothetical protein cpfrc_00546 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302205693|gb|ADL10035.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis
          C231]
 gi|302330245|gb|ADL20439.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis
          1002]
 gi|308275928|gb|ADO25827.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis I19]
          Length = 683

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           IDL      ++  AS P     + A AG+GKT  +  R+  L+    A P+ +L +T T
Sbjct: 1  MIDLNELDSDQRAAASAPRGPVAILAGAGTGKTRTITYRIANLIDRGMASPNRVLAVTFT 60

Query: 72 KAAAAEMSHRV 82
          + AA EM HR+
Sbjct: 61 RRAAGEMRHRL 71


>gi|257791534|ref|YP_003182140.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257475431|gb|ACV55751.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 753

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 73/245 (29%), Gaps = 57/245 (23%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA- 58
           MI   +   H    D   +  + Q  A   T     V A AG+GKT  L  R   L+   
Sbjct: 24  MIDMQAENRHGLLGDDAPRLNAAQREAVTATEGYVRVIAGAGTGKTLALAHRFAYLVNEL 83

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
              P  +LC T T  AA EM  R+  +                                 
Sbjct: 84  GIMPGNVLCATFTNKAAGEMRRRIRRLTGDNDTGY------------------------- 118

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS--- 175
                         + T H FC +++Q+          F + D      +++   +    
Sbjct: 119 --------------INTFHGFCVSVLQEDGHALQYPKSFLVLDNADIDAMLQVIYEERGL 164

Query: 176 TLASIMLDNNEELKKA--------FYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
           TL  +      ++ +         +Y  +     E +     D    R  +     F+ Y
Sbjct: 165 TLRDMTFSKARDMIEIMKLKERPGYYRDMLAMPLEGLRQKYLDATDARDII-----FYGY 219

Query: 228 LWRRK 232
           L++ K
Sbjct: 220 LYQEK 224


>gi|282856086|ref|ZP_06265372.1| DNA helicase II [Pyramidobacter piscolens W5455]
 gi|282586107|gb|EFB91389.1| DNA helicase II [Pyramidobacter piscolens W5455]
          Length = 716

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 52/210 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           + +  ++  + E + A++      V A AGSGKT  L +R   L+      P  +LC+T 
Sbjct: 3   DILGGLNAVQREAVTATE--GYVRVIAGAGSGKTRALSRRFAWLVNGLGVMPGHILCVTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           +  +A EM  R+                                         + +    
Sbjct: 61  SNKSANEMRQRIHA---------------------------------------LTDDNDT 81

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             V T H FC +++Q+          F + D               L  I  +    L+ 
Sbjct: 82  GYVNTFHGFCVSVLQEDSHAVQYPKSFIVLDNSD--------IDDILRIIYAERGLTLRD 133

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKL 220
                 E  +  +I  L  + +  R  + L
Sbjct: 134 --MTFAEARDMFEIRKLFKEPLYCRDMIAL 161


>gi|259506514|ref|ZP_05749416.1| probable dna helicase II protein [Corynebacterium efficiens YS-314]
 gi|259165934|gb|EEW50488.1| probable dna helicase II protein [Corynebacterium efficiens YS-314]
          Length = 1067

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 71/186 (38%), Gaps = 20/186 (10%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           + T  +  +         V A AG+GKT  +  RV+ L+    A P  +L LT T+ AA 
Sbjct: 7   APTAQQAAIIGAEPGPLLVVAGAGAGKTETMAARVVWLVANGFAAPDQVLGLTFTRKAAQ 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++S R+ + +   + +                P   D+  +  +  ++        V T 
Sbjct: 67  QLSQRIRQRLETLAGI----------------PTLRDLDPSGGIARSL--QAITPTVSTY 108

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI-MLDNNEELKKAFYEI 195
            ++  ++++++ L   +     +  + +   +  +   +    +    +   + +   ++
Sbjct: 109 DSYAGSLLREYGLLLPVEPSARLITQTELYHIARQVVDNYRGELTATQSPATVTEYLLDL 168

Query: 196 LEISND 201
           +   ++
Sbjct: 169 VSEMDN 174


>gi|298368781|ref|ZP_06980099.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282784|gb|EFI24271.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 1211

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 20/155 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +     RL+ L      ++L +T TKAA AE+  R+   +     + 
Sbjct: 20  LIEASAGTGKTYGIAALFTRLVVLERLPVESVLAVTFTKAATAELKTRLRARLDEVLQVL 79

Query: 94  DEILSAE-------------------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + I   E                   +  +  +   +    +    L   +       + 
Sbjct: 80  ENISDGEDGSDGLDAYCAAHHPDDAFLPALLRRALRQESRGRLIVRLKAAIGQFDNAAIY 139

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           TIH FC+ I++ +    +      + ++ + + L+
Sbjct: 140 TIHGFCQRILRDYAFLCSAPLDVELTEDNRDRLLV 174


>gi|313623351|gb|EFR93578.1| ATP-dependent DNA helicase PcrA [Listeria innocua FSL J1-023]
          Length = 696

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 39/132 (29%)

Query: 45  THILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           T +L  R+  L+     +P  +L +T T  AA EM  R+  ++   +             
Sbjct: 1   TRVLTHRIAYLVRERGVNPYNILAITFTNKAAREMKSRIGNLMGGEAE------------ 48

Query: 104 IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
                                      + + T H+ C  I+++         +F I D  
Sbjct: 49  --------------------------SIWISTFHSMCVRILRRDIDRIGYERNFTILDGS 82

Query: 164 QSKKLIEEAKKS 175
               +I+   K 
Sbjct: 83  DQLSVIKGILKE 94


>gi|167737949|ref|ZP_02410723.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 14]
          Length = 610

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDGGGDPFIARLFETTLAPGRGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|38233329|ref|NP_939096.1| putative helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199589|emb|CAE49245.1| Putative helicase [Corynebacterium diphtheriae]
          Length = 1076

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 19/147 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  + S P     V A AG+GKT  +  RV+ L+ +    P  +L LT T+ AA +
Sbjct: 17  PTPQQADVISSPLAPTLVVAGAGAGKTETMAARVVWLVASGLVDPDRVLGLTFTRKAAQQ 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +S R+ + +   + + +         ++   P  +  +K   +  T         V T  
Sbjct: 77  LSKRIRDRLEQLAGIDN---------LRDLDPTGALATKLEAIAPT---------VSTYD 118

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQ 164
           ++   ++ ++ L   +     +  + +
Sbjct: 119 SYAGRLISEYGLLLPVEPSSRLISQTE 145


>gi|291544571|emb|CBL17680.1| ATP-dependent DNA helicase PcrA [Ruminococcus sp. 18P13]
          Length = 781

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 71/255 (27%), Gaps = 84/255 (32%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-------------------- 59
              +Q           V A AGSGKT ++V R+  ++                       
Sbjct: 20  NPMQQEAVFAVNGPVLVLAGAGSGKTTVIVNRIANMVYFGNAYHESGRTVSQEDLDFLQG 79

Query: 60  --------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
                                 P  +L +T T  AA E+  R+  ++             
Sbjct: 80  YVDGRETDIDRLRDVIASAPIRPWNILAITFTNKAAGELKSRLEAMLGEQGRDVHAA--- 136

Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159
                                              T H+ C  I++Q          F I
Sbjct: 137 -----------------------------------TFHSACVRILRQEIERLGYDRSFTI 161

Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE--DIETLISDIISNRTA 217
            D + S+++I    K  L+ + +   +   K+    +  + D+  D + L +    +   
Sbjct: 162 YDSDDSQRII----KGCLSDMNISEKQFPPKSILGEISRAKDKLLDPDQLEAQASGDYRR 217

Query: 218 LKLIFFFFSYLWRRK 232
           L +   +  Y  R K
Sbjct: 218 LAIAKIYREYQNRLK 232


>gi|218781303|ref|YP_002432621.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
 gi|218762687|gb|ACL05153.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
          Length = 1156

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 41/154 (26%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++   +       + A  G+GKT  L  R+ RL+    A P ++L +T T  AA  M+HR
Sbjct: 506 QESAVNHEGAPLLIKAGPGTGKTRTLTHRIARLVEKSGAAPESILAITFTNQAARAMAHR 565

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +++                                       E  G + V T HAFC 
Sbjct: 566 LEDMLD--------------------------------------ENGGKVFVATFHAFCL 587

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            ++++           ++  E+     I++A K 
Sbjct: 588 TLLRELAEAEGRA--ISVLGEKDRLFYIKKALKE 619


>gi|154174762|ref|YP_001408534.1| UvrD/Rep family helicase [Campylobacter curvus 525.92]
 gi|112803087|gb|EAU00431.1| helicase, UvrD/Rep family [Campylobacter curvus 525.92]
          Length = 689

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
             +D ++  + E     D      + A AGSGKT  +  R+  L+      P+  L LT 
Sbjct: 3   NLLDNLNDAQREAARHID--GPMLILAGAGSGKTKTITTRLAYLIGEVGIDPANTLTLTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R L ++         +L                                 
Sbjct: 61  TNKAANEMRTRALAMLNQSGKACTPLLC-------------------------------- 88

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
               T H F    ++         ++F I D +  K++I+  +     +I+       K 
Sbjct: 89  ----TFHKFGLLFLKFHIDRLGRKNNFIIIDTDDKKRIIKSFESPISTAILSSEISNYKN 144

Query: 191 AFYEILEISNDEDI 204
           +   + E+  + + 
Sbjct: 145 SLLSVEEVYKNANF 158


>gi|254459347|ref|ZP_05072768.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
 gi|207083960|gb|EDZ61251.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
          Length = 694

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 17  ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQ + A+       + A+AG+GKT  +V R+  LL     P  +L LT T  AA
Sbjct: 3   LSRLNQEQYVAATSNDAQNLIIASAGTGKTSTIVGRIGHLLGNGVKPQEILLLTFTNKAA 62

Query: 76  AEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           AEM  RV E       S +      A   +   K   +  + + R L
Sbjct: 63  AEMVERVAEYFGKDVASKIDAGTFHAVSYRWLKKLDGRVVLKQQREL 109


>gi|269123275|ref|YP_003305852.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
 gi|268314601|gb|ACZ00975.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
          Length = 981

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V A+AG+GKT+ L    +  LL       +L +T TK A AE+ +R+ E I        
Sbjct: 7   VVKASAGTGKTYRLSLEYIYFLLLGIDFRNILVMTFTKKATAEIKNRIFEFILIIISKEG 66

Query: 95  --EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             E L   I    G K    D+ K   +   +L     +++ TI  F   +
Sbjct: 67  NYEELMKNIENNFGYKFKDGDIEKLTDIYKDMLINKNSVRIDTIDGFTSKV 117


>gi|152965140|ref|YP_001360924.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151359657|gb|ABS02660.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1128

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 17/176 (9%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S  E ++ +   + T  +  +   P     V A AGSGKT  +  RV+ L+      P  
Sbjct: 6   SAVEIAQRLGRPTPTPEQVAVIEAPVEPVLVVAGAGSGKTETMSSRVVWLVANELVAPED 65

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA E++            +   +       +       +       L    
Sbjct: 66  VLGLTFTRKAAGELAE----------RVRRRLRGLRAVGLGPAPAPGAGADGPHGLGD-- 113

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
               G   V T HA+  +++    L   +     +  +  + +L  +  +S L  +
Sbjct: 114 ----GEPVVSTYHAYAASLVTDHGLRLGVEPQSTVLSDAGAWQLASDVVESWLGDL 165


>gi|284992623|ref|YP_003411177.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065868|gb|ADB76806.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 1062

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 39/159 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             ++Q +   P     V A  G+GKT  +V+ V   +     P  +L LT ++ AAAE+ 
Sbjct: 28  DPTQQAVVDHPGGPLLVLAGPGTGKTTTIVEAVAARIDGGVDPEQILVLTFSRRAAAELR 87

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV   +                                               +T H++
Sbjct: 88  DRVAARVARTIREPLA--------------------------------------RTFHSY 109

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
              ++++  L         +    +   L+ E  +  LA
Sbjct: 110 AYGVLRRAALLRGEAP-PRLLTAAEQDALVAELLRGDLA 147


>gi|257451430|ref|ZP_05616729.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_5R]
 gi|317058010|ref|ZP_07922495.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_5R]
 gi|313683686|gb|EFS20521.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_5R]
          Length = 1007

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 95/221 (42%), Gaps = 21/221 (9%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           +   + A+AG+GKT+ L    L  L      S +  +T T+ A AE+  R+LE       
Sbjct: 2   KKLVLKASAGTGKTYRLSLEYLLSLYRGVPYSEIFVMTFTRKATAEIRERILEFSLEILS 61

Query: 92  LSD--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
            ++  + L   + K+  +   + ++   R    ++L+    +++ TI +F + +  +   
Sbjct: 62  HTETGKDLLENLQKLDTELVFREEI--LRTAYYSMLKNKDKIRIYTIDSFFQMLFHKV-- 117

Query: 150 EANITSHFAIAD------EEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
              ++ ++ I        EE++K+  ++  K  L+        +  K F+++    N E+
Sbjct: 118 ---VSPYYQIYSMKMIEKEEENKEFYKKILKQILSK---REFFDKMKLFFDLSPEKNIEN 171

Query: 204 IETLISDIISNRTALKLIFFFFSYLWR---RKIIEKSLWSI 241
              LI ++I  R    L+   +    R    + +++ + S 
Sbjct: 172 YLLLIQNMIRERWKFLLLREPYQKRERIAYERSLQEHIESF 212


>gi|303326806|ref|ZP_07357248.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
 gi|302862794|gb|EFL85726.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
          Length = 1081

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 55/220 (25%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS--------------------TLLCLTHTKAAA 75
           V A+AGSGKT+ L +  L  L+   H S                     +L +T T AAA
Sbjct: 7   VKASAGSGKTYELTRCFLLRLMECGHASGVAASPACALAPEGRQCGWGDILAVTFTNAAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  RV+  + + +  +              +    D  +AR  +  I+     L ++T
Sbjct: 67  AEMRDRVIRHLKSAALGA------------RAEDIPLDADEARRWVDVIMRDLSALNIRT 114

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA--------------------DEEQSKKLIEEAKKS 175
           I +    I++   LE N+   F                       ++   + L+ EA ++
Sbjct: 115 IDSLLHLIVRAAALELNLHPDFQPVFATEEALAPYLDLFMERAWREDAAMRDLLREACRA 174

Query: 176 TL---ASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
            +    S      E+L +    +L+       E L  + +
Sbjct: 175 LVVHGQSKGFLAGEKLLRQLRNLLDDVLLGRFEDLTPEAV 214


>gi|149914018|ref|ZP_01902550.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
 gi|149812302|gb|EDM72133.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
          Length = 1703

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 54/215 (25%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
            Q ++E +D +  +  EQ++  D  + +  V A  GSGKT +LV RV  L+ +    P+ +
Sbjct: 1078 QSYAEIVDNLGNSTQEQIVRDDREKTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGI 1137

Query: 66   LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
            L L + + AAAE+  R+  +I   +                                   
Sbjct: 1138 LVLAYNRHAAAEIRERLRLLIGEDARF--------------------------------- 1164

Query: 126  ETPGGLKVQTIHAFCEAIM-QQFP-LEANITSHFAIADEEQSKKLI--------EEAKKS 175
                 + V TIHA    ++   F   EA     F     + ++ L          EA + 
Sbjct: 1165 -----VTVLTIHALAMRLVGASFAGREAADDPDFETLLTDAARLLRGDGLDKVEAEALRE 1219

Query: 176  TL----ASIMLDNNEELKKAFYEILEISNDEDIET 206
            TL      I++D  +++    Y ++       I+ 
Sbjct: 1220 TLIQGFRWILVDEYQDVGPEEYALIAAVAGRSIDD 1254


>gi|257466895|ref|ZP_05631206.1| ATP-dependent nuclease subunit A [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918042|ref|ZP_07914282.1| ATP-dependent nuclease subunit A [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691917|gb|EFS28752.1| ATP-dependent nuclease subunit A [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 1007

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 95/221 (42%), Gaps = 21/221 (9%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           +   + A+AG+GKT+ L    L  L      S +  +T T+ A AE+  R+LE       
Sbjct: 2   KKLVLKASAGTGKTYRLSLEYLLSLYRGVPYSEIFVMTFTRKATAEIRERILEFSLEILS 61

Query: 92  LSD--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
            ++  + L   + K+  +   + ++   R    ++L+    +++ TI +F + +  +   
Sbjct: 62  HTETGKDLLENLQKLDTELVFREEI--LRTAYYSMLKNKDKIRIYTIDSFFQMLFHKV-- 117

Query: 150 EANITSHFAIAD------EEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
              ++ ++ I        EE++K+  ++  K  L+        +  K F+++    N E+
Sbjct: 118 ---VSPYYQIYSMKMIEKEEENKEFYKKILKQILSK---REFFDKMKLFFDLSPEKNIEN 171

Query: 204 IETLISDIISNRTALKLIFFFFSYLWR---RKIIEKSLWSI 241
              LI ++I  R    L+   +    R    + +++ + S 
Sbjct: 172 YLLLIQNMIRERWKFLLLREPYQKRERIAYERSLQEHIESF 212


>gi|167815128|ref|ZP_02446808.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei 91]
          Length = 626

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|78358538|ref|YP_389987.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220943|gb|ABB40292.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 1089

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            +++Q           V A  G+GKT  LV R+ RL+     P  +L +T T+ AA EM 
Sbjct: 507 NEAQQRAMDAGPEPVLVLAGPGTGKTRTLVGRIRRLVDNGVSPRQILAVTFTRRAATEMD 566

Query: 80  HRVLEIITAWSHLSDEILSAEIT-----KIQGKKPNKSDMSKARHLLITILETPGGLKV 133
            R+L  +   + L        +      K     P       AR +           ++
Sbjct: 567 GRLLAELGGNAALPRTDTLHALAFEYWHKAYDDAPVLLSEDGARRVFAEANSGETAQRI 625


>gi|158312846|ref|YP_001505354.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108251|gb|ABW10448.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1156

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 19/174 (10%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
              +D +     ++  A        V A  G+GKT  LV  +   +          L +T
Sbjct: 504 PSVLDGLD--PDQRRAAEHVGGPLLVLAGPGTGKTRTLVHAIAHRVRELGVPAEQCLAVT 561

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA E+  R+  ++               T+ +    + +    A      + E PG
Sbjct: 562 FTRRAAGELRERLDVLLAP---------GPAGTRAESTPADGTPTDAASTSGAPVDEAPG 612

Query: 130 -------GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
                  G    T H     I+++  +         +AD+    +LI+EA   T
Sbjct: 613 DTGRPGAGALATTFHGLGLLIIREQHVALARAPRVQVADDAIRGELIDEAMHGT 666


>gi|167918353|ref|ZP_02505444.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           BCC215]
          Length = 667

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|68637930|emb|CAI36135.1| ATP-dependent DNA helicase [Pseudomonas syringae pv. phaseolicola]
          Length = 598

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 42/161 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
                Q+ A +   S ++ A  GSGKT  L  ++ RLL    +    ++ +T+T  AA E
Sbjct: 8   DLNDAQVAAIEHPGSVFLVACPGSGKTRTLTYKIARLLSELKSDKKRVVAITYTHRAADE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++    S                                        L + TIH
Sbjct: 68  IHERIEQLGVDTSQ---------------------------------------LWIGTIH 88

Query: 138 AFCE-AIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKST 176
           +FC   I++ +      +   F + +   ++++ EE   + 
Sbjct: 89  SFCLEWILRPYGIYHLALKHGFRVINAHDTERMHEELCSAV 129


>gi|317490668|ref|ZP_07949135.1| UvrD/REP helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910230|gb|EFV31872.1| UvrD/REP helicase [Eggerthella sp. 1_3_56FAA]
          Length = 733

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 73/245 (29%), Gaps = 57/245 (23%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA- 58
           MI   +   H    D   +  + Q  A   T     V A AG+GKT  L  R   L+   
Sbjct: 4   MIDMQAENRHGLLGDDAPRLNAAQREAVTATEGYVRVIAGAGTGKTLALAHRFAYLVNEL 63

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
              P  +LC T T  AA EM  R+  +                                 
Sbjct: 64  GIMPGNVLCATFTNKAAGEMRRRIRRLTGDNDTGY------------------------- 98

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS--- 175
                         + T H FC +++Q+          F + D      +++   +    
Sbjct: 99  --------------INTFHGFCVSVLQEDGHALQYPKSFLVLDNADIDAMLQVIYEERGL 144

Query: 176 TLASIMLDNNEELKKA--------FYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
           TL  +      ++ +         +Y  +     E +     D    R  +     F+ Y
Sbjct: 145 TLRDMTFSKARDMIEIMKLKERPGYYRDMLAMPLEGLRQKYLDATDARDII-----FYGY 199

Query: 228 LWRRK 232
           L++ K
Sbjct: 200 LYQEK 204


>gi|224000571|ref|XP_002289958.1| UVRD/Rep like helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975166|gb|EED93495.1| UVRD/Rep like helicase [Thalassiosira pseudonana CCMP1335]
          Length = 698

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 64/184 (34%), Gaps = 51/184 (27%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL--------- 57
           ++ S   + ++ ++ E  L   P  S   V A  G+GKT +L  R+  LLL         
Sbjct: 49  EQSSIITEGLNPSQMEATL--RPRYSITRVIAGPGAGKTKVLTCRIAHLLLSCESEGAGH 106

Query: 58  -ANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
               H        +L +T TK AA EM  R+ E++   +       +             
Sbjct: 107 ANGIHSSYLYREGILAVTFTKKAAMEMERRLTELVATSTQQLPVEQT------------- 153

Query: 112 SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
                                V T H+ C  I+++      +   F I D+    +++++
Sbjct: 154 --------------------TVGTFHSVCSKILRKNQFVQTLDGSFNILDQSDQLRILKD 193

Query: 172 AKKS 175
             K 
Sbjct: 194 VLKE 197


>gi|257440774|ref|ZP_05616529.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257196748|gb|EEU95032.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 305

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 81/202 (40%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------------- 59
           ++  + + +  +D      + A AGSGKT +LV R+  L+                    
Sbjct: 24  LNDMQRQAVFTTD--GPLLILAGAGSGKTTVLVNRIANLIRFGSAHGSSWTPREVTEDDV 81

Query: 60  -------------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
                                         ++ +T T  AA E+  R+  ++       D
Sbjct: 82  KALKTAIMTGTDAPAWLDGMLRQNAVRSWNVMAITFTNKAAGELKERLRNMLGG--EEGD 139

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E+ +                                    T H+ C  I++++       
Sbjct: 140 EVFA-----------------------------------STFHSACVRILRRWAESIGYP 164

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             F I D + S+++++   K  
Sbjct: 165 RSFTIYDTDDSQRVMKAVYKEL 186


>gi|167845096|ref|ZP_02470604.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           B7210]
          Length = 652

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|16752303|ref|NP_444560.1| exodeoxyribonuclease V, beta chain, putative [Chlamydophila
           pneumoniae AR39]
 gi|7188945|gb|AAF37903.1| exodeoxyribonuclease V, beta chain, putative [Chlamydophila
           pneumoniae AR39]
          Length = 1050

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            ++ A+AG+GKT  + Q VLR L+     H    L +T T A+  E+  R+ + +     
Sbjct: 17  FFLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLR 76

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               +L+++   +        ++ +    +   L T   + + TIH FC  +++Q+  + 
Sbjct: 77  ELKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQYFPKT 136

Query: 152 NI 153
            +
Sbjct: 137 RL 138


>gi|15836270|ref|NP_300794.1| exodeoxyribonuclease V, beta [Chlamydophila pneumoniae J138]
 gi|33242097|ref|NP_877038.1| exodeoxyribonuclease V 135K chain [Chlamydophila pneumoniae TW-183]
 gi|12644495|sp|Q9Z7G7|EX5B_CHLPN RecName: Full=Exodeoxyribonuclease V beta chain
 gi|8979110|dbj|BAA98945.1| exodeoxyribonuclease V, beta [Chlamydophila pneumoniae J138]
 gi|33236607|gb|AAP98695.1| exodeoxyribonuclease V 135K chain [Chlamydophila pneumoniae TW-183]
          Length = 1050

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            ++ A+AG+GKT  + Q VLR L+     H    L +T T A+  E+  R+ + +     
Sbjct: 17  FFLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLR 76

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               +L+++   +        ++ +    +   L T   + + TIH FC  +++Q+  + 
Sbjct: 77  ELKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQYFPKT 136

Query: 152 NI 153
            +
Sbjct: 137 RL 138


>gi|289641082|ref|ZP_06473250.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509023|gb|EFD29954.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1327

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 41/181 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           L +    ++  A+       + A  G+GKT  LV  +   +   A P    L +T T+ A
Sbjct: 656 LAALDAEQRAAAAVTNGPLLIVAGPGTGKTRTLVHSIAYRVRECAVPAERCLAVTFTRRA 715

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAE+  R+  +I                                       +    +   
Sbjct: 716 AAELRERLDALIP--------------------------------------QQASRVFAT 737

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H     ++Q+      +    A+ADE    +++ EA   T  +    N E L++A   
Sbjct: 738 TFHGLGLRMVQEQHARLGLGPDVAVADEAVRTQILREALAGT--ASGTRNLERLRRALAG 795

Query: 195 I 195
           +
Sbjct: 796 L 796


>gi|305679610|ref|ZP_07402420.1| phage prohead protease, HK97 family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660230|gb|EFM49727.1| phage prohead protease, HK97 family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 1095

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 19/163 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T+ +  +         V A AG+GKT  +  RV+ L+     +P  +L LT T+ AA +
Sbjct: 18  PTEQQATVIQADLGPMLVVAGAGAGKTETMAARVVWLVANGLINPDQVLGLTFTRKAAQQ 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ + +   + + D         I    P+    ++ R           G    T  
Sbjct: 78  LGKRINDRLGQLAGIPD---------IAALDPSGRLANRLRS---------AGPTTSTYD 119

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           AF   ++ +F L   +     I  + +  ++  +        +
Sbjct: 120 AFAGKLVGEFGLLLPVEPSSRIISQTELYRIAVQVVNEYEGEL 162


>gi|71899303|ref|ZP_00681464.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
 gi|71730929|gb|EAO32999.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
          Length = 1242

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 46/191 (24%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +   V RL++        +L +T T+AA  E+  R+ E +   + L 
Sbjct: 18  LIEASAGTGKTFTMATLVTRLVVERGWRIGHILAVTFTEAATQELRTRIRERLILAARLV 77

Query: 94  DEI------LSAEITKIQGKKPNKSDMSKA----------------------RHLLITIL 125
            +       L +   ++    P+  D  +                       R  L    
Sbjct: 78  PQAAELPVPLPSAQPQMPHPTPHPQDAPRITPGVTNSASPEPSDVVLTLQILRTHLTATD 137

Query: 126 ETPGGL--------------KVQTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKL 168
           ETP  L               + TIH FC  ++++  L      I      +D +   +L
Sbjct: 138 ETPHALHSRLQQAADEIDLAAIFTIHGFCTRVLREHALHTGQSFIPPTLLASDRDLLHEL 197

Query: 169 IEEAKKSTLAS 179
             +  +  +A 
Sbjct: 198 AADIWRQEIAD 208


>gi|15618648|ref|NP_224934.1| exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae CWL029]
 gi|4377044|gb|AAD18877.1| Exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae CWL029]
          Length = 1050

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            ++ A+AG+GKT  + Q VLR L+     H    L +T T A+  E+  R+ + +     
Sbjct: 17  FFLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLR 76

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               +L+++   +        ++ +    +   L T   + + TIH FC  +++Q+  + 
Sbjct: 77  ELKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQYFPKT 136

Query: 152 NI 153
            +
Sbjct: 137 RL 138


>gi|269302528|gb|ACZ32628.1| exodeoxyribonuclease V, beta subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 1050

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            ++ A+AG+GKT  + Q VLR L+     H    L +T T A+  E+  R+ + +     
Sbjct: 17  FFLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLR 76

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               +L+++   +        ++ +    +   L T   + + TIH FC  +++Q+  + 
Sbjct: 77  ELKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQYFPKT 136

Query: 152 NI 153
            +
Sbjct: 137 RL 138


>gi|313681842|ref|YP_004059580.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313154702|gb|ADR33380.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 692

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 16/199 (8%)

Query: 17  ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   +Q   A+ P     + A+AG+GKT  +V R+  L+  N  P  +L LT T  AA
Sbjct: 3   LSRLNDQQYTAATAPYGHNLIIASAGTGKTSTIVGRIAYLISQNVKPEEILLLTFTNKAA 62

Query: 76  AEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
            EM  RV         S +      A   +   +K  K  + + R L             
Sbjct: 63  QEMVERVAAFFGREIASKIDAGTFHAVSYRWLKRKEGKVVLKQPRELKTLFRSVYEKRTF 122

Query: 134 QTIHAFCE-------AI--MQQFPLEANITSHFA--IADEEQSKKLIEEAKKSTLASIML 182
             I   C         +  +  F     + ++F   I   +    +        +     
Sbjct: 123 SHID--CATSAYGANYLYDVYSFYQNTELETNFEEWILTRQDEHAVYAAIYADIIDEFEA 180

Query: 183 DNNEELKKAFYEILEISND 201
              E     F ++L    D
Sbjct: 181 LKKEYGFVNFNDLLLHMRD 199


>gi|315585865|gb|ADU40246.1| excision endonuclease subunit UvrD [Helicobacter pylori 35A]
          Length = 681

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LNNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLD 183
           T H F    ++Q          F++ D +++K L ++ K           K+ +  + + 
Sbjct: 91  TFHRFGLLFLRQHMGLLKRACDFSVLDSDETKTLCKQLKISSFRASISQIKNGMMDLSMQ 150

Query: 184 NNE--ELKKAFYEILEISNDEDIETLI 208
           ++E  +  + +   L+  N  D + L+
Sbjct: 151 DSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|239931604|ref|ZP_04688557.1| superfamily I DNA/RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439976|ref|ZP_06579366.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC
           14672]
 gi|291342871|gb|EFE69827.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC
           14672]
          Length = 921

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 36/155 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +S T +++   +    +  + A AGSGKT ++ QR+ RL+   +  P  ++  T T+ AA
Sbjct: 1   MSFTDAQRTAINTHDDNLLIVACAGSGKTEVISQRIARLIGRPDVEPKNIVAFTFTEKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  RV   I                                      +     + + T
Sbjct: 61  GELKERVHTRIRELHGE--------------------------------VHGLAEMYIGT 88

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           +H +   ++     EA     + + ++ Q++ +I+
Sbjct: 89  MHGYALDLLHSHVPEA---FKYNVLNDVQTRLMID 120


>gi|225020702|ref|ZP_03709894.1| hypothetical protein CORMATOL_00709 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946648|gb|EEG27857.1| hypothetical protein CORMATOL_00709 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 1095

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 19/163 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T+ +  +         V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 18  PTEQQATVIQADLGPMLVVAGAGAGKTETMAARVVWLVANGLIDPDQVLGLTFTRKAAQQ 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ + +   + + D         I    P+    ++ R           G    T  
Sbjct: 78  LGKRINDRLGQLAGIPD---------IAALDPSGRLANRLRS---------AGPTTSTYD 119

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           AF   ++ +F L   +     I  + +  ++  +        +
Sbjct: 120 AFAGKLVGEFGLLLPVEPSSRIISQTELYRIAVQVVNEYEGEL 162


>gi|219852269|ref|YP_002466701.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219546528|gb|ACL16978.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 921

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 45/200 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  ++   +    +  V A AGSGKT  + +R+  L+     P +++  T T  AAAEM+
Sbjct: 3   TPEQKRAIAFRDGNLQVIACAGSGKTETITRRIAGLVAGGVDPRSIVAFTFTDRAAAEMA 62

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +                      P + D++              GL V TIHA+
Sbjct: 63  DRLRLHLQTLV------------------PGEPDLA--------------GLSVGTIHAY 90

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C+  ++             +    +S  L+++  +    S    ++   +       +  
Sbjct: 91  CDQRLK------------EVLPRYRSFDLLDDDMRPLFCSRYY-HDFGFEDLLVHYQDRR 137

Query: 200 NDEDIETLISDIISNRTALK 219
            +     +I D   N   ++
Sbjct: 138 REPSRYEIIHDFCRNADLVR 157


>gi|167910323|ref|ZP_02497414.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           112]
          Length = 673

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|332176248|gb|AEE25501.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1108

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 9/208 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           + S  V A AGSGKT   V+  L  LL   +P + L +T T  A +E   RV+  +    
Sbjct: 14  STSKLVKAPAGSGKTTESVKYFLNSLLDCKYPESTLFMTFTNQATSEFRERVISYLRIAQ 73

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             +    + E   +      K  + + + L   +L  P  L+++TI A C  I+   PL 
Sbjct: 74  SNTPPKSAHE---MDMYSLAKKVLQRDKELGWGLLSNPNRLEIKTIDALCANIVASSPLG 130

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND--EDIETLI 208
           + + +   +++  Q  +L   A K  L+    +           +L   N+  E     +
Sbjct: 131 SEMGAVGKVSERPQ--ELYLCAAKKLLS--GYEGEGRAGADIRNLLSKFNNNFEMAAKTL 186

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEK 236
           ++++  R     + +  +   R+  +E+
Sbjct: 187 AEMLPYRDQWLPLVYQHTESERKAKLEE 214


>gi|260588108|ref|ZP_05854021.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
 gi|260541635|gb|EEX22204.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
          Length = 623

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 39/187 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           + +  +++           + A  GSGKT  + +RV  L+  +  +P+ +L +T TKAAA
Sbjct: 1   MEKNAAQEKAIHHNQGPMMLLAGPGSGKTTTMTRRVEALIREHRVNPAHILVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R L +                                      + E    +   T
Sbjct: 61  REMKERFLSLCQKSG---------------------------------VKENYQRVTFGT 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++       +T    I++E++   L E   K  +   + D  E  +    EI
Sbjct: 88  FHGIFYGILRHAY---GLTGKNIISEEQRYDMLREIIYKQRIE--IEDEKEFFEGLVQEI 142

Query: 196 LEISNDE 202
            ++ N+ 
Sbjct: 143 SQVKNNR 149


>gi|163839982|ref|YP_001624387.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953458|gb|ABY22973.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 1080

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 80/211 (37%), Gaps = 34/211 (16%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  ++ +         V A AGSGKT  +  RV+ L+    A P  +L +T T+ AA E
Sbjct: 12  PTAEQRAIIEASLDPMLVIAGAGSGKTTTMADRVVHLVANRLAKPEEILGVTFTRKAAGE 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++ ++   +      +      E++ + G    +++                   + T H
Sbjct: 72  LAAKIRAKLRILGQQNP-----ELSDVLGPDSLEAE-------------------ISTYH 107

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKL---IEEAKKSTLASIMLDNNEELKKAFYE 194
           ++   I+  + L   +     +  + Q  +L   I EA    L+      +  L +A   
Sbjct: 108 SYASGIVSDYGLRIGVERDATVLGQAQCWQLASKIVEAYDGDLSR-YSGASSTLVQAVIS 166

Query: 195 IL-----EISNDEDIETLISDIISNRTALKL 220
           +       + N  D+ET ++ +     AL L
Sbjct: 167 LASECAEHLQNPRDVETWLAALRDEFEALPL 197


>gi|167902086|ref|ZP_02489291.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           NCTC 13177]
          Length = 661

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|261886355|ref|ZP_06010394.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 685

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 80/217 (36%), Gaps = 40/217 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
             +D ++  KS++  AS    +  + A AGSGKT  +  R+  L+ +    P   L LT 
Sbjct: 3   NLLDSLN--KSQKEAASHIDGAMLILAGAGSGKTKTITTRLAYLISVVGIDPLNTLTLTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA+ M HR L ++ +    S  +                                  
Sbjct: 61  TNKAASTMKHRALSMLNSNISSSPLL---------------------------------- 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
               T H F    ++ +  E    + F I D +  KK+I+E + S  AS++ +   + K 
Sbjct: 87  ---CTFHKFGLLFLKFYINELGRKNSFVIIDTDDKKKIIKEFESSVAASVISNEISKYKN 143

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
               + ++ +   +      + +N   +   +  +  
Sbjct: 144 LLLSVEDVISSSKLNAENQFMKTNYEKIAKAYKLYEE 180


>gi|301633254|gb|ADK86808.1| UvrD/REP helicase [Mycoplasma pneumoniae FH]
          Length = 529

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 54/212 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            + ++   +       V + AG+GKT ++ +R   L+     +P ++L  T T  AA+EM
Sbjct: 5   NQEQKAAVTCDNGVNVVYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDKAASEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++++I   S                                        L + T H+
Sbjct: 65  RQRIIKLIPQKSLQD-------------------------------------LHIYTFHS 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEE----------QSKKLIEEAKKSTLASIMLDNNEEL 188
           F    +Q+        S FAI  +              + + E  K+ +  + LD N E 
Sbjct: 88  FANRFLQKHGK-----SDFAILRDSNRFFSDYEMGDQLQTVVEIYKNKVVDLELD-NLEY 141

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKL 220
             AF +    + +ED  T+ +     R A  L
Sbjct: 142 NSAFRDACTDTFNEDFSTISNGQFRKRAATAL 173


>gi|172040184|ref|YP_001799898.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851488|emb|CAQ04464.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 1219

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 81/207 (39%), Gaps = 33/207 (15%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
           +   ++++ P  S  V A AG+GKT  +  RV+ L+      P  +L LT T+ AA E+ 
Sbjct: 56  QQSAVISAPPQGSYIVVAGAGAGKTETMAARVVWLVANGYVLPEHVLGLTFTRKAANELG 115

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   +   +              + + P      +A   +           V T  ++
Sbjct: 116 QRIRGRLETLARSG----------FREQLPADDPRHEALRNISPA--------VSTYDSY 157

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA-----FYE 194
              I+ ++ L A +     I  + +        K      ++LD++ E++ +       +
Sbjct: 158 AGNIVGEYGLLAPVEPSGRIISDAE--------KWMITRQLLLDHDREMQTSRSMVTVID 209

Query: 195 ILEISNDEDIETLISDIISNRTALKLI 221
            +   +DE ++  ++++   R   + +
Sbjct: 210 FIHRLSDE-MDNHLAELKDVRGETEAL 235


>gi|238922029|ref|YP_002935543.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
 gi|238873701|gb|ACR73409.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
          Length = 717

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 40/158 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
           TK +    +    +  V++  GSGKT +L  R+  L+      PS+++ LT T  AA++M
Sbjct: 24  TKEQTEAITQTEGNIRVASVPGSGKTFVLTYRIAYLITELFVEPSSIVALTFTNKAASQM 83

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR+  I+   ++                                           T H 
Sbjct: 84  KHRLRNIVGDNANCFT---------------------------------------GTFHG 104

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           +C   +++          F I D++   ++I++  +  
Sbjct: 105 YCNMFLKEEIHRLTFPKTFTILDKKAELEMIKDVAEDM 142


>gi|227494918|ref|ZP_03925234.1| DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831370|gb|EEH63753.1| DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 1119

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 30/171 (17%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT  + QRVL LL      P  +L LT T+ AAAE +HR+ + I   +      
Sbjct: 2   AGAGSGKTETMSQRVLFLLANYGIAPERVLGLTFTRKAAAEFAHRLRKRIGFLASSG--- 58

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETP---GGLKVQTIHAFCEAIMQQFPLEANI 153
                                  LL  +   P     + V T  +F   ++++      +
Sbjct: 59  -----------------------LLAEVENDPWFAASVNVSTYDSFAGNLVKEHGALVGV 95

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
             +  +     S +++++   +    +      E++KA   +        +
Sbjct: 96  DPNARLITAAASWQILDDLISTYQGKLPEKAPAEIRKAALHLANEMTSHGV 146


>gi|227541926|ref|ZP_03971975.1| superfamily I ATP-dependent helicase [Corynebacterium
          glucuronolyticum ATCC 51866]
 gi|227182369|gb|EEI63341.1| superfamily I ATP-dependent helicase [Corynebacterium
          glucuronolyticum ATCC 51866]
          Length = 686

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
          E+  L      +++ A+ P     + A AG+GKT  +  R+  L+   A  P  +L +T 
Sbjct: 4  ESFSLEDLDPDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLINTGAVSPQRVLAVTF 63

Query: 71 TKAAAAEMSHRVLEI 85
          TK AA EM  R+  +
Sbjct: 64 TKRAAGEMRDRLANM 78


>gi|331000262|ref|ZP_08323946.1| putative exodeoxyribonuclease V, beta subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329572428|gb|EGG54081.1| putative exodeoxyribonuclease V, beta subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 1141

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 26  LASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83
            A+ P      + A+AG+GKT+ L++ +LRLL+        +L +T T AA  E+S R+ 
Sbjct: 8   AATTPIEGRMLLEASAGTGKTYSLMRVLLRLLVEKGIELDRILVVTFTNAATDELSSRLR 67

Query: 84  EIITAWSHLSDEILSAEITKIQG-KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +T          S     +       K         L T L       + TIH FC+ 
Sbjct: 68  SNLTELIEQIRLNKSGSFNDLLDSWGEKKYSQDIILEKLQTALNKIDDAAIFTIHGFCQR 127

Query: 143 IMQQFPLEANITSHFAIADEEQSKK 167
           I+Q F   +     F I D+  +K 
Sbjct: 128 ILQDFVFSSKGNYDFEIGDDSNAKD 152


>gi|152991980|ref|YP_001357701.1| ATP-dependent DNA helicase UvrD [Sulfurovum sp. NBC37-1]
 gi|151423841|dbj|BAF71344.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
           NBC37-1]
          Length = 688

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S++        +  + A AGSGKT  L  R+  L+      P+  L LT T  AAAEM
Sbjct: 9   NPSQREAVEHIDGAMLILAGAGSGKTKTLTARLAYLVGEVGIDPANTLTLTFTNKAAAEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R L+++         +                                      T H 
Sbjct: 69  RERALKLMPTKVSYPPLL-------------------------------------CTFHK 91

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           F    ++    +   +++F I D +  K+L+    K  
Sbjct: 92  FGLLFLKFHIEKLGRSNNFVIIDSDDKKRLLRSIAKEL 129


>gi|284992622|ref|YP_003411176.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065867|gb|ADB76805.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 1120

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 25/145 (17%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           + +  +  + S P  R   V A AGSGKT  +  RV  L+      P  +L LT T+ AA
Sbjct: 46  APSDEQARVVSAPADRPLVVVAGAGSGKTETMAARVCWLVANELVAPDAVLGLTFTRKAA 105

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +E++ R+   + A S   +                     + +  L   + T     V T
Sbjct: 106 SELNERIRIRLGALSRHPETD------------------PELKERLAVAMPT-----VST 142

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA 160
            H +  +++ +  L   +     + 
Sbjct: 143 YHGYAASLVSEHGLRIGVEPGAGVL 167


>gi|154147886|ref|YP_001406551.1| UvrD/REP helicase [Campylobacter hominis ATCC BAA-381]
 gi|153803895|gb|ABS50902.1| UvrD/REP helicase [Campylobacter hominis ATCC BAA-381]
          Length = 674

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 21/215 (9%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +   A+ P     + A+AG+GKT  +V R+  LL    +P  +L LT T  AA EM 
Sbjct: 5   NNEQYAAATAPMGHNLIIASAGTGKTSTIVARISHLLSLGVNPKKILLLTFTNKAANEMI 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+       S   DE ++++IT       + S + K       +L+ P  LK+  + + 
Sbjct: 65  SRL-------SMKFDEKITSQITAGTFHSVSYSLLKKLNK--GVVLKQPSELKIL-LKSI 114

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
                ++F   +++  +  +   +       +  K   +     N EE + AF +I    
Sbjct: 115 AAR--RRFDHISDVKPYGGVYLYDIYSLFQNKELKENFSDWFSKNYEE-QAAFSDIY--- 168

Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                  ++ +  + +       F    +  RK +
Sbjct: 169 -----ADILEEFEAQKAKFGYADFNDLLIRMRKEL 198


>gi|212537775|ref|XP_002149043.1| ATP-depentend DNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210068785|gb|EEA22876.1| ATP-depentend DNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 1006

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 40/163 (24%)

Query: 17  ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKA 73
           ++   + Q  A     S   V A  GSGKT  L  RV  LL +     P  ++C T T  
Sbjct: 7   LNGLNAAQRTAVTSPSSILQVLAPPGSGKTKTLTARVAYLLSSKHAFRPQDVICCTFTIK 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A+ EM  R+  +I                                       +    L +
Sbjct: 67  ASREMRERLTHLIGD-------------------------------------QVVSKLVL 89

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+ C   +  +     +   F IAD      +I+   K  
Sbjct: 90  GTFHSICRRYLVAYGHLIGLKKGFGIADSNDGLAIIKRIVKRL 132


>gi|296118831|ref|ZP_06837407.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
          20306]
 gi|295968320|gb|EFG81569.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
          20306]
          Length = 692

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           S  +DL +    +++ A+ P     + A AG+GKT  +  R+  ++      P  +L +
Sbjct: 2  SSFELDLEALDDDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHMVDQGFVSPQRVLAV 61

Query: 69 THTKAAAAEMSHRVLEI 85
          T T  AA EM  R+L +
Sbjct: 62 TFTSKAAGEMRDRLLSM 78


>gi|54295644|ref|YP_128059.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Lens]
 gi|53755476|emb|CAH16972.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Lens]
          Length = 665

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 39/153 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             S+Q+ A         V A AGSGKT ++ Q++  L+ +   + +++  +T T  AA E
Sbjct: 2   LNSQQMAAVKYIDGPLLVLAGAGSGKTRVITQKIGYLINSCGYNANSICAVTFTNKAANE 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV   + A S                                       GLKV T H
Sbjct: 62  MRARVSAFLPAASRR-------------------------------------GLKVATFH 84

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
               +I+++     ++   F+I D E   +++ 
Sbjct: 85  TLGLSIIKRDVSRCDLKPGFSIFDSEDCLQILR 117


>gi|261856131|ref|YP_003263414.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
 gi|261836600|gb|ACX96367.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
          Length = 688

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 39/153 (25%)

Query: 20  TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAE 77
             ++Q  A     S   V A AGSGKT ++ ++++ L+     P   +  +T T  AA E
Sbjct: 9   LNAQQSAAVRHLESPLLVLAGAGSGKTRVITEKIVYLIEKQGIPARQVFAVTFTNKAAKE 68

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R  E +                                       E   GL + T H
Sbjct: 69  MVARTAERLPP-------------------------------------ERRRGLNISTFH 91

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
                 +++      + + F + D + S  L +
Sbjct: 92  TLGLNFIRREYAALGLRAGFTVFDSDDSLALFK 124


>gi|218663804|ref|ZP_03519734.1| ATP-dependent DNA helicase protein [Rhizobium etli IE4771]
          Length = 814

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 29/149 (19%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           S       V A AGSGKT+ L  RV  L++  A P  +L +T                  
Sbjct: 151 SHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTF----------------- 193

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             S  +   ++  + +I            A  L  +           T H     +++ +
Sbjct: 194 --SRRAAAEMARRVERICRDVLGSKAGVMADALTWS----------GTFHGIGARLLRDY 241

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKST 176
             +  + + F I D E S  L+   +   
Sbjct: 242 NKQIGLDADFTIHDREDSADLMNLIRHDL 270


>gi|303258192|ref|ZP_07344199.1| putative exodeoxyribonuclease V, beta subunit [Burkholderiales
           bacterium 1_1_47]
 gi|302858945|gb|EFL82029.1| putative exodeoxyribonuclease V, beta subunit [Burkholderiales
           bacterium 1_1_47]
          Length = 1141

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 26  LASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83
            A+ P      + A+AG+GKT+ L++ +LRLL+        +L +T T AA  E+S R+ 
Sbjct: 8   AATTPIEGRMLLEASAGTGKTYSLMRVLLRLLVEKGIELDRILVVTFTNAATDELSSRLR 67

Query: 84  EIITAWSHLSDEILSAEITKIQG-KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +T          S     +       K         L T L       + TIH FC+ 
Sbjct: 68  SNLTELIEQIRLNKSGSFNDLLDSWGEKKYSQDIILEKLQTALNKIDDAAIFTIHGFCQR 127

Query: 143 IMQQFPLEANITSHFAIADEEQSKK 167
           I+Q F   +     F I D+  +K 
Sbjct: 128 ILQDFVFSSKGNYDFEIGDDSNAKD 152


>gi|291276509|ref|YP_003516281.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
 gi|290963703|emb|CBG39536.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
          Length = 712

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 49/160 (30%), Gaps = 39/160 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             +++           V A AGSGKT  L  R+  L+          L LT T  A+ EM
Sbjct: 9   NPAQREAIEHIDGPILVLAGAGSGKTKTLTTRLAYLIDEVGIPAHQTLMLTFTNKASKEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R L +++   H                                           T H 
Sbjct: 69  RERALSLMSNPIHPPLL--------------------------------------CTFHR 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           F    ++ +  E     +F + D +  KKLI++     L 
Sbjct: 91  FGLMFLKFYIRELGRGENFVLLDSDDKKKLIKQVSTEILR 130


>gi|154314455|ref|XP_001556552.1| hypothetical protein BC1G_05321 [Botryotinia fuckeliana B05.10]
 gi|150848966|gb|EDN24159.1| hypothetical protein BC1G_05321 [Botryotinia fuckeliana B05.10]
          Length = 999

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 52/165 (31%), Gaps = 39/165 (23%)

Query: 13  TID-LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           TID L+    + Q  A     +   + A  GSGKTH L  R   LL     P  ++  T 
Sbjct: 2   TIDSLLRGLNASQKAAVSSQANTLAILAGPGSGKTHTLTSRTAWLLQQGLQPCNIIVATF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R+ ++I                                            
Sbjct: 62  TVKAAREMKERIGKLIGNGLE-------------------------------------SK 84

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           L + T H      + Q+     I   F IAD   S  +I+   K 
Sbjct: 85  LILGTFHRIARIYLAQYGHLIGIRKGFGIADSNDSLAIIKRIVKR 129


>gi|227486911|ref|ZP_03917227.1| superfamily I ATP-dependent helicase [Corynebacterium
          glucuronolyticum ATCC 51867]
 gi|227092985|gb|EEI28297.1| superfamily I ATP-dependent helicase [Corynebacterium
          glucuronolyticum ATCC 51867]
          Length = 686

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
          E+  L      +++ A+ P     + A AG+GKT  +  R+  L+   A  P  +L +T 
Sbjct: 4  ESFSLEDLDPDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLINTGAVSPQRVLAVTF 63

Query: 71 TKAAAAEMSHRVLEI 85
          TK AA EM  R+  +
Sbjct: 64 TKRAAGEMRDRLANM 78


>gi|157736816|ref|YP_001489499.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri RM4018]
 gi|157698670|gb|ABV66830.1| ATP-dependent DNA helicase, UvrD/Rep family [Arcobacter butzleri
           RM4018]
          Length = 681

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + L +  + +   A+       + A+AG+GKT  +V R+  LL +  +P  +L LT T  
Sbjct: 1   MPLSNLNQEQLQAATCHQGFNLIIASAGTGKTSTIVGRIAYLLNSGINPKEILLLTFTNK 60

Query: 74  AAAEMSHRVLEIIT-----AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           AAAEM +RV +             +   +S ++ K           ++ + L  +I E
Sbjct: 61  AAAEMINRVAKFFGKDIAKEIMAGTFHSVSYKLLKELNVNITLKQPNELKTLFKSIYE 118


>gi|86742478|ref|YP_482878.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569340|gb|ABD13149.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1130

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +  T  +   A+ P     + A AGSGKT ++  RV+ L+      P  +L LT T  AA
Sbjct: 53  VPYTDEQIAAATAPLEPGVIIAGAGSGKTSVMAARVVWLVATGQVRPDQVLGLTFTTKAA 112

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+S RV   +   S  +     A   ++ G+                         V T
Sbjct: 113 AELSGRVRLALRKASAGAGPGGPAADGEVDGEP-----------------------TVAT 149

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            HAF   ++    L   +     +       +L     +S
Sbjct: 150 YHAFAGRLVVDNALRLGLEPDLQLISGAARYQLAARVARS 189


>gi|307611686|emb|CBX01379.1| ATP-dependent DNA helicase rep [Legionella pneumophila 130b]
          Length = 665

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 39/153 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             S+Q+ A         V A AGSGKT ++ Q++  L+ +   + +++  +T T  AA E
Sbjct: 2   LNSQQMAAVKYIDGPLLVLAGAGSGKTRVITQKIGYLINSCGYNANSICAVTFTNKAANE 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV   + A S                                       GLKV T H
Sbjct: 62  MRARVSAFLPAASRR-------------------------------------GLKVATFH 84

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
               +I+++     ++   F+I D E   +++ 
Sbjct: 85  TLGLSIIKRDVSRCDLKPGFSIFDSEDCLQILR 117


>gi|331082324|ref|ZP_08331450.1| hypothetical protein HMPREF0992_00374 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400810|gb|EGG80411.1| hypothetical protein HMPREF0992_00374 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 623

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 39/187 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           + +  +++           + A  GSGKT  + +RV  L+  +  +P+ +L +T TKAAA
Sbjct: 1   MEKNAAQEKAIHHNQGPMMLLAGPGSGKTTTMTRRVEALIREHRVNPAHILVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R L +                                      + E    +   T
Sbjct: 61  REMKERFLSLCQKSG---------------------------------VKENYQRVTFGT 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++       +T    I++E++   L E   K  +   + D  E  +    EI
Sbjct: 88  FHGIFYGILRHAY---GLTGKNIISEEQRYDMLREIIYKQRIE--IEDEKEFFEGLVQEI 142

Query: 196 LEISNDE 202
            ++ N+ 
Sbjct: 143 SQVKNNR 149


>gi|317153565|ref|YP_004121613.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943816|gb|ADU62867.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 1055

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 68/187 (36%), Gaps = 30/187 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLL---ANAHPS-------------TLLCLTHTKAAAAEMS 79
           V A+AGSGKT  L +R L LL     NA P               ++ +T T  AAAEM 
Sbjct: 7   VKASAGSGKTFQLTRRFLSLLDRADQNARPFACAGRPHRGYAWPEIMAVTFTNKAAAEMK 66

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV++ +   +   D          +           A   +  IL     L ++TI + 
Sbjct: 67  ERVVKGLKLAALDLDNAGQRAECSPEA----------ASRAIDAILRRYHRLNIRTIDSL 116

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST--LASIMLDNNEELKKAFYEILE 197
              +++ F LE  I   F IA +E    L +   +    L        E L  A   +L 
Sbjct: 117 LALLLRLFALEFGIRPDFRIAFDE--TDLFDTVYEHFTSLCDTDCPERELLFDAMETMLR 174

Query: 198 ISNDEDI 204
               +  
Sbjct: 175 AEGRKSF 181


>gi|88602638|ref|YP_502816.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
 gi|88188100|gb|ABD41097.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
          Length = 526

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 37/158 (23%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79
           +S+Q   +  +    + A AG+GKT  L ++++ LLL  +  P++++  T T+ AAA M 
Sbjct: 19  ESQQSAITTQSPHVRIIAGAGAGKTETLTRKIVSLLLVEHVEPASIVAFTFTEKAAANMK 78

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + +     L ++ L A +                           G + V TIH F
Sbjct: 79  SRIYKRVKE---LGEDALCARL---------------------------GEMYVGTIHGF 108

Query: 140 CEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           C  +++ QF         + + DE Q    +       
Sbjct: 109 CFHLLEDQFGY-----GSWGVLDENQEMAYLMRVGWEL 141


>gi|91772773|ref|YP_565465.1| ATP-dependent DNA helicase Rep [Methanococcoides burtonii DSM 6242]
 gi|91711788|gb|ABE51715.1| DNA helicase, ATP dependent [Methanococcoides burtonii DSM 6242]
          Length = 587

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 42/161 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  +K ++ +      + +V A+AGSGKT +L +RV  LL        +L LT T  A  
Sbjct: 5   VELSKKQEEIVFAENGAIYVKASAGSGKTRVLTERVRYLLDKTNK--KVLALTFTNKAGE 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R                                       L  I E    + V T 
Sbjct: 63  EIKER---------------------------------------LSDISEIDNRVFVGTF 83

Query: 137 HAFCEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKST 176
           H+FC++I++             I  DE    +L+E+A   T
Sbjct: 84  HSFCQSILENHGNLIGRAQMPHIFEDESDRLELVEQAIMQT 124


>gi|28871867|ref|NP_794486.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855120|gb|AAO58181.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 907

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 38/150 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ +   A+       V A  G+GKT  L+ R+  L+     PS +L LT T  AA E+ 
Sbjct: 2   TQGQHDAATASETFVNVVAGPGTGKTTTLIHRIKHLVERGIPPSQILVLTFTNKAAHELV 61

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                                      L ++ +     +   T HAF
Sbjct: 62  ER--------------------------------------LKVSGIAGAADVWAGTFHAF 83

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLI 169
               ++++     + S   +AD     +L+
Sbjct: 84  GLEFLRKYHQIFGLESDVRLADPLMQVRLM 113


>gi|307354471|ref|YP_003895522.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
 gi|307157704|gb|ADN37084.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
          Length = 1004

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 61/238 (25%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
           +    Q  A        V A  GSGKT ++ +++L ++    A P  +L LT ++ AAAE
Sbjct: 8   EPNQSQTEAIKGCGVQLVLAGPGSGKTRVITEKILHMIRENGAKPEEILALTFSEKAAAE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +                                              L + T H
Sbjct: 68  MAERLEKETDI----------------------------------------SRLTIATFH 87

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEE--LKKAFYE 194
           +FC  +++   L+  I+ +  +           ++  S    ++ + NN    ++     
Sbjct: 88  SFCLEVLEDNVLDTGISFNSGLISRTSQLIWGMKSIDSFGFEAVEIGNNGPSVIESIIDG 147

Query: 195 ILEISND----EDIETLISD-------------IISNRTALKLIFFFFSYLWRRKIIE 235
           I    ++    EDIE  + +             +      LK+   + +Y  R ++++
Sbjct: 148 ISRFRDELISAEDIEEYLEEKNAQETSADEDIYLGKLSDLLKVYREYENYKRREELLD 205


>gi|323978469|gb|EGB73552.1| UvrD/REP helicase [Escherichia coli TW10509]
          Length = 632

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 49/207 (23%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ID +SQ++ E + A     +  V A+AGSGKT +L +RV R +L N+   +++ LT T 
Sbjct: 1   MIDNLSQSQIEVVRA-PMGGAIQVLASAGSGKTRVLTERV-RFILNNSARGSVVALTFTN 58

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R                                       L    E    + 
Sbjct: 59  KAADEMLER---------------------------------------LDDGSENRDRIW 79

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + TIH+  + +++ +     +     I + +Q +    E    +L    ++ +E     +
Sbjct: 80  IATIHSVAQRVLESYGYTIGLPKELHIFERDQDRM---EVFLHSLREQGVNIDE-----Y 131

Query: 193 YEILEISNDEDIETLISDIISNRTALK 219
            ++ ++    + E +IS  ++  + +K
Sbjct: 132 LDVEDVREKRNREKVISQYLNVFSIIK 158


>gi|300669638|sp|Q9PLT8|EX5B_CHLMU RecName: Full=Exodeoxyribonuclease V beta chain
          Length = 1026

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 9/194 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +   ++ A+AG+GKT  + Q +LR LL         +L +T T AA  E+  R+ E +  
Sbjct: 14  SGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQESLKQ 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKA-RHLLITILETPGGLKVQTIHAFCEAIMQQ- 146
              L  + LS   T +     ++    K         L T   + + TIH  C   ++Q 
Sbjct: 74  ALTLFSQALSHPETPLPPYVSSQETKVKQLYXKXRNSLATLDEMNIFTIHGLCRFTLEQH 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIE 205
           FP    I    ++  E Q+   I++     L     +N     + AF      +  +   
Sbjct: 134 FPWVQPIHPS-SMFSEPQT---IQQYILDYLRQNSWENVLSPKQYAFLSYHHRATTQQTR 189

Query: 206 TLISDIISNRTALK 219
            L   ++ +  +  
Sbjct: 190 HLADRLLQDYASTP 203


>gi|118475254|ref|YP_891891.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414480|gb|ABK82900.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
           82-40]
          Length = 685

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 80/217 (36%), Gaps = 40/217 (18%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
             +D ++  KS++  AS    +  + A AGSGKT  +  R+  L+ +    P   L LT 
Sbjct: 3   NLLDSLN--KSQKEAASHIDGAMLILAGAGSGKTKTITTRLAYLISVVGIDPLNTLTLTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA+ M HR L ++ +    S  +                                  
Sbjct: 61  TNKAASTMKHRALSMLNSNISSSPLL---------------------------------- 86

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
               T H F    ++ +  E    + F I D +  KK+I+E + S  AS++ +   + K 
Sbjct: 87  ---CTFHKFGLLFLKFYINELGRKNSFVIIDTDDKKKIIKEFESSVAASVISNEISKYKN 143

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
               + ++ +   +      + +N   +   +  +  
Sbjct: 144 LLLSVEDVISSSKLNAENQFMKTNYEKIAKAYKLYEE 180


>gi|284053716|ref|ZP_06383926.1| ATP-dependent DNA helicase Rep [Arthrospira platensis str.
          Paraca]
          Length = 105

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 11 SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           E++D ++     Q  A +       V A AGSGKT  L  RV  L+  +  +P  +L +
Sbjct: 1  MESVDFLTSLNPSQRQAVEHFCGPMLVVAGAGSGKTRALTYRVANLIDNHKVNPENILAV 60

Query: 69 THTKAAAAEMSHRVLEII 86
          T T  AA E+  R+  I 
Sbjct: 61 TFTNKAAREIKDRIESIF 78


>gi|52843012|ref|YP_096811.1| ATP-dependent DNA helicase Rep [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630123|gb|AAU28864.1| ATP-dependent DNA helicase Rep [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 665

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 39/153 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             S+Q+ A         V A AGSGKT ++ Q++  L+ +   + +++  +T T  AA E
Sbjct: 2   LNSQQMAAVKYIDGPLLVLAGAGSGKTRVITQKIGYLINSCGYNANSICAVTFTNKAANE 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV   + A S                                       GLKV T H
Sbjct: 62  MRARVSAFLPAVSRR-------------------------------------GLKVATFH 84

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
               +I+++     ++   F+I D E   +++ 
Sbjct: 85  TLGLSIIKRDVSRCDLKPGFSIFDSEDCLQILR 117


>gi|162455882|ref|YP_001618249.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161166464|emb|CAN97769.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 685

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 51/144 (35%), Gaps = 38/144 (26%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             V A AGSGKT ++  R+ RLL       ++L +T T  AAAEM  RV +++ +     
Sbjct: 1   MLVLAGAGSGKTRVVTTRIARLLDRGIPARSMLAMTFTNKAAAEMHERVGKLVGSKVARE 60

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                                LKV T H F   ++        +
Sbjct: 61  -------------------------------------LKVCTFHRFGLDVLGAETRALGL 83

Query: 154 TSH-FAIADEEQSKKLIEEAKKST 176
               FAI D+  +  +I E  +  
Sbjct: 84  RGGSFAIFDQSDALGVIREILREL 107


>gi|330836169|ref|YP_004410810.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329748072|gb|AEC01428.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 157

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 38/146 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           +     ++    D T +  + A +GSGKT ++ ++V+  +    +  S +L +T T+ AA
Sbjct: 1   MDLNHEQKAAVEDFTHNLLILAASGSGKTRVITEKVIHAIREKGYAGSEILAITFTRKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +                                           GL  QT
Sbjct: 61  TEMQERLRTGLDEKERR-------------------------------------GLTAQT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIAD 161
            HA+   +++ +     +   + IAD
Sbjct: 84  FHAYAAHVLRTYGWHIGLPQGWKIAD 109


>gi|270158153|ref|ZP_06186810.1| ATP-dependent DNA helicase Rep [Legionella longbeachae D-4968]
 gi|289163586|ref|YP_003453724.1| ATP-dependent DNA helicase Rep [Legionella longbeachae NSW150]
 gi|269990178|gb|EEZ96432.1| ATP-dependent DNA helicase Rep [Legionella longbeachae D-4968]
 gi|288856759|emb|CBJ10570.1| ATP-dependent DNA helicase Rep [Legionella longbeachae NSW150]
          Length = 667

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 73/214 (34%), Gaps = 47/214 (21%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
             S+Q+ A         V A AGSGKT ++ Q++  L+       +T+  +T T  AA E
Sbjct: 2   LNSQQMAAVRHIDGPLLVLAGAGSGKTRVITQKIAYLINTCGYAANTVCAVTFTNKAANE 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV  ++   +                                       GLKV T H
Sbjct: 62  MRARVAAVLPPATRR-------------------------------------GLKVATFH 84

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
               +I+++     ++   F+I D E             L   +  N    K+   +I +
Sbjct: 85  TLGLSIIKRHLDLCDLKKGFSIFDSEDCV--------QILRGFLPANRATEKEFILQIQQ 136

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
             +    + L  D + N  A    +   + L+ R
Sbjct: 137 KISRWKNDLLTPDQVINNPADAPYYEEAALLYPR 170


>gi|89899997|ref|YP_522468.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89344734|gb|ABD68937.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 1112

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 46/217 (21%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80
            + L    P R   V A  GSGKT  LV R+  L+   A  PS +L LT T  AA E+  
Sbjct: 200 DQLLAIQAPERYVNVVAGPGSGKTSTLVHRIRYLIDEKAVDPSHILVLTFTNKAAFELVD 259

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ +                                        +     +   T HAF 
Sbjct: 260 RLRDA--------------------------------------NIHRASDVWAGTFHAFG 281

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
              ++++     + S   +AD   +  ++ +     L  + L +   ++  +  + ++ N
Sbjct: 282 LDFLRKYHQCFGLESDLKVADRLNAITILNQ----ELPKVELTHYRRVQDPYDWLPDVVN 337

Query: 201 DEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236
              I+ L  +++S     L +     +   RR+  E 
Sbjct: 338 --SIKRLKEEMVSPEAYRLAIQGLPTAEPGRRECRED 372


>gi|212704689|ref|ZP_03312817.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC 29098]
 gi|212671923|gb|EEB32406.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC 29098]
          Length = 713

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 68/212 (32%), Gaps = 43/212 (20%)

Query: 13  TIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ID      S Q  A+        V A AGSGKT  +  R+  L      P ++L LT T
Sbjct: 1   MIDYAHALNSAQYEAATCGDGPVLVVAGAGSGKTRTITYRLSWLADHGVPPESMLLLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM                                   + +A  L    L    G 
Sbjct: 61  RKAAQEM-----------------------------------LQRAAALSDHALSLVQG- 84

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              T H+F   +++++  +      F + D       I  A K+    + L   +     
Sbjct: 85  --GTFHSFAFGVLRRYRPDWLEDRPFTVMDSAD----INAAVKACKDDLRLGKGDRSFPR 138

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFF 223
              I+   +    + +  D +  R A  L+ +
Sbjct: 139 TQAIVGFLSKARNKEMRLDEVLQREAFHLLPY 170


>gi|116747950|ref|YP_844637.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB]
 gi|116697014|gb|ABK16202.1| ATP-dependent DNA helicase, Rep family [Syntrophobacter
           fumaroxidans MPOB]
          Length = 620

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 42/179 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           + + S +  +    S     A V+A AGSGKT  L  ++  L+   +  P  +L +T T 
Sbjct: 1   MSMQSLSPVQMEAVSHVETPAIVTAGAGSGKTRTLTNKIAYLVNNLHYDPERILAITFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R+ +I    +                                          
Sbjct: 61  KAADEMKSRLEKITGRSAGDFP-------------------------------------W 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           V+T H+ C  I++             I D  Q K  +    K  LA + LD +     A
Sbjct: 84  VRTFHSACFKILKVHCELLGYRKPLLIHDASQQKAHL----KKVLAELNLDRHYLFAAA 138


>gi|224438366|ref|ZP_03659293.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818]
 gi|313144808|ref|ZP_07807001.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818]
 gi|313129839|gb|EFR47456.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818]
          Length = 676

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S   +EQL A+  P+    + A+AG+GKT  +V R+  LL     P  +L LT T  A+
Sbjct: 3  LSNLNAEQLAAATAPSGHNLIIASAGTGKTSTIVGRIAYLLQQGFKPKDILLLTFTNKAS 62

Query: 76 AEMSHRVLEIITA 88
          +EM  RV +I  +
Sbjct: 63 SEMIERVGKIFGS 75


>gi|116202273|ref|XP_001226948.1| hypothetical protein CHGG_09021 [Chaetomium globosum CBS 148.51]
 gi|88177539|gb|EAQ85007.1| hypothetical protein CHGG_09021 [Chaetomium globosum CBS 148.51]
          Length = 973

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 49/162 (30%), Gaps = 39/162 (24%)

Query: 17  ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           ++     Q    +    +  + A  GSGKTH L  RV+ L+      P  ++  T T  A
Sbjct: 11  LNGLNDAQCRAVTSDAATVAILAGPGSGKTHTLTARVVWLVDHMGIRPEDVIVATFTVKA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ + +                                            + + 
Sbjct: 71  AREMKERIGKALGNGRE-------------------------------------NKIILG 93

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+     +  +     +   F IAD   S  +I+   K  
Sbjct: 94  TFHSISRRYLAAYGRHIGLNQKFGIADSADSSAIIKRVCKRL 135


>gi|315452622|ref|YP_004072892.1| DNA helicase II (UvrD) [Helicobacter felis ATCC 49179]
 gi|315131674|emb|CBY82302.1| DNA helicase II (UvrD) [Helicobacter felis ATCC 49179]
          Length = 626

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 60/187 (32%), Gaps = 38/187 (20%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
           L++     Q  A         + A AGSGKT  L  R+  L+      P   L LT T  
Sbjct: 5   LLADLNEPQREACMHVKGPLLILAGAGSGKTKTLTTRLAYLIASKGVPPQNTLTLTFTNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R  +++    H   +                                     +
Sbjct: 65  AAKEMQERAGQLLRLCGHTHTQS----------------------------------AWL 90

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H F  A +++          F +   E++K L   A  + L    +D +  L  AF 
Sbjct: 91  TTFHKFGFAFLKEHASLLE-QKKFKLVSPEEAKTLSRSAILN-LKPGFMDADVYLGHAFK 148

Query: 194 EILEISN 200
            I  I N
Sbjct: 149 MISRIKN 155


>gi|148361128|ref|YP_001252335.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Corby]
 gi|296108458|ref|YP_003620159.1| ATP-dependent DNA helicase [Legionella pneumophila 2300/99 Alcoy]
 gi|148282901|gb|ABQ56989.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Corby]
 gi|295650360|gb|ADG26207.1| ATP-dependent DNA helicase [Legionella pneumophila 2300/99 Alcoy]
          Length = 665

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 39/153 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             S+Q+ A         V A AGSGKT ++ Q++  L+ +   + +++  +T T  AA E
Sbjct: 2   LNSQQMAAVKYIDGPLLVLAGAGSGKTRVITQKIGYLINSCGYNANSICAVTFTNKAANE 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV   + A S                                       GLKV T H
Sbjct: 62  MRARVSAFLPAVSRR-------------------------------------GLKVATFH 84

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
               +I+++     ++   F+I D E   +++ 
Sbjct: 85  TLGLSIIKRDVSRCDLKPGFSIFDSEDCLQILR 117


>gi|291514124|emb|CBK63334.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Alistipes shahii WAL
           8301]
          Length = 1042

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 38/173 (21%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           +SA AGSGKTH L + +   + +    P  +L  T T+AAA+E   +    +        
Sbjct: 7   ISAGAGSGKTHTLTEILADHIASGFCRPGEVLLTTFTEAAASEFREKTRRKLLEKG---- 62

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                     L+       G ++ TIH+  ++++ ++     + 
Sbjct: 63  --------------------------LVDAAFEMAGARIGTIHSVAKSLIDRYWYRLGLA 96

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
               + D+E   + I E+    LA++  D++    +AF  +         E L
Sbjct: 97  PSVTVLDDEGRTRHINES----LAALATDDD---LRAFRRLQRCFGFTRQEGL 142


>gi|290782532|gb|AAF38900.2| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
           Nigg]
          Length = 1026

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 9/194 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +   ++ A+AG+GKT  + Q +LR LL         +L +T T AA  E+  R+ E +  
Sbjct: 14  SGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQESLKQ 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKA-RHLLITILETPGGLKVQTIHAFCEAIMQQ- 146
              L  + LS   T +     ++    K         L T   + + TIH  C   ++Q 
Sbjct: 74  ALTLFSQALSHPETPLPPYVSSQETKVKQLYXKXRNSLATLDEMNIFTIHGJCRFTLEQH 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIE 205
           FP    I    ++  E Q+   I++     L     +N     + AF      +  +   
Sbjct: 134 FPWVQPIHPS-SMFSEPQT---IQQYILDYLRQNSWENVLSPKQYAFLSYHHRATTQQTR 189

Query: 206 TLISDIISNRTALK 219
            L   ++ +  +  
Sbjct: 190 HLADRLLQDYASTP 203


>gi|222476099|ref|YP_002564620.1| UvrD/REP helicase [Halorubrum lacusprofundi ATCC 49239]
 gi|222454470|gb|ACM58734.1| UvrD/REP helicase [Halorubrum lacusprofundi ATCC 49239]
          Length = 948

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 51/208 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           + +    +Q L         V A AG+GKT  + +R   ++   +  P  +L +T T  A
Sbjct: 1   MTTPNDQQQELIDSKQGIHVVDAGAGTGKTFTVTRRYAEIVDQDDVEPEDVLLVTFTNNA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R++                                                 +Q
Sbjct: 61  ATEMRERIVANCDYGMRE-----------------------------------LSDAPIQ 85

Query: 135 TIHAFCEAIMQQFPLEA--------NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           T H+ C  I+ +   EA         IT    + ++E     +E+A+         D++ 
Sbjct: 86  TFHSLCHDILMEHGFEAPTLLGIDDRITGSTRVLEDEN----VEKAQFREFIRRFSDDHP 141

Query: 187 ELKKAFYEILEISNDEDIETLISDIISN 214
           E    F  + E     ++  LI+ + + 
Sbjct: 142 EYDDFFRAVAEPV---ELLGLINQLAAK 166


>gi|54298803|ref|YP_125172.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Paris]
 gi|53752588|emb|CAH14021.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Paris]
          Length = 665

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 39/153 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
             S+Q+ A         V A AGSGKT ++ Q++  L+ +   + +++  +T T  AA E
Sbjct: 2   LNSQQMAAVKYIDGPLLVLAGAGSGKTRVITQKIGYLINSCGYNANSICAVTFTNKAANE 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV   + A S                                       GLKV T H
Sbjct: 62  MRARVSAFLPAVSRR-------------------------------------GLKVATFH 84

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
               +I+++     ++   F+I D E   +++ 
Sbjct: 85  TLGLSIIKRDVSRCDLKPGFSIFDSEDCLQILR 117


>gi|302870989|ref|YP_003839625.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
 gi|302573848|gb|ADL41639.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
          Length = 955

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 32/146 (21%)

Query: 34  AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
              SA+AG GKT  +    + L+      P+ ++C+T+T+ AA E+ +R++         
Sbjct: 9   IIYSASAGCGKTENIANLYIDLISQKKILPTEIVCITYTEKAARELKNRIISK------- 61

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                 +K R L +  +       ++TIH+FC  +++ +   A 
Sbjct: 62  ----------------------AKQRRLDLLTISKIQNSHIKTIHSFCMYLLRFYWAWAK 99

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLA 178
           + ++F I  E    +LI E     L+
Sbjct: 100 VDANFKIVPEID--RLILELIDDYLS 123


>gi|254515002|ref|ZP_05127063.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma
           proteobacterium NOR5-3]
 gi|219677245|gb|EED33610.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma
           proteobacterium NOR5-3]
          Length = 1042

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 31/145 (21%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            +SA AGSGKT+ L  ++  LL +    P  ++  T T+ AA E+  RV   +    H  
Sbjct: 6   VISAGAGSGKTYTLTGKLRDLLASGTIRPEGVVATTFTRLAAGELKERVRGSLIKGGH-- 63

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
              ++ E+ +                             + T+++ C  ++++F  EA +
Sbjct: 64  -HTVATEVEQAL---------------------------IGTVNSVCGVLLKRFAFEAGL 95

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLA 178
                  +E Q+  L   A +  LA
Sbjct: 96  PPEQRTLEETQAALLFNRAMEHALA 120


>gi|152997238|ref|YP_001342073.1| exodeoxyribonuclease V subunit beta [Marinomonas sp. MWYL1]
 gi|150838162|gb|ABR72138.1| exodeoxyribonuclease V, beta subunit [Marinomonas sp. MWYL1]
          Length = 1240

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 17/187 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLL+                +L +T T+AA AE+  R+   
Sbjct: 32  LIEASAGTGKTYTIANLYLRLLVPTGQAGDLDKPLTVDQILVVTFTEAATAELKARIRGR 91

Query: 86  ITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I A      +  S+++       + +    + A   L+   +      V TIH FC+ ++
Sbjct: 92  IRAARKALLQGESSDVFLADWLVQMSDEQRAGAIEKLLYAEKQMDEAAVFTIHGFCQRML 151

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
            Q   E+ +     I  E      +  A K    S+    ++        I       + 
Sbjct: 152 SQNAFESRMLFQQTI--ETDELAPLSMAVKDVWRSVFYPMDDTKAALIQPIWS-----NP 204

Query: 205 ETLISDI 211
           + L+ D+
Sbjct: 205 DALLKDL 211


>gi|319954736|ref|YP_004166003.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319423396|gb|ADV50505.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 686

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 43/181 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + +    +   +   V A AG+GKT  ++ R   L+ +   PS +  LT TK AA E+ 
Sbjct: 8   NQGQLRAVTYDGKHLLVLAGAGTGKTRTIIARAAHLIASGVDPSKIQILTFTKKAANEIV 67

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV   +   +                                   +   G    T H++
Sbjct: 68  ERVKASLPQSNS----------------------------------QAISGA---TFHSW 90

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C  ++ ++P      + F + D +    +++      ++    D   +L+    ++L+I 
Sbjct: 91  CNQLILKYPNLFG-AAAFTVIDPDDQLGIMK-----MISGTHADTYAKLRIKPQQLLDIY 144

Query: 200 N 200
           +
Sbjct: 145 S 145


>gi|23013594|ref|ZP_00053471.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 640

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 38/152 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++L A     S  V A  G+GKT  LV R + LL   A    +   T T  AA E+  R
Sbjct: 19  EQRLAAEAGAESVLVLAGPGTGKTTTLVGRYIHLLDLGALAPRIFVSTFTSRAALELRGR 78

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +       +                               E  G + + T+H    
Sbjct: 79  IGARLAGLGRDVEP------------------------------ERFGRMPIGTLHGMAL 108

Query: 142 AIMQQFPLEANITSH---FAIADEEQSKKLIE 170
            ++Q+ P           F + DE+   ++I 
Sbjct: 109 RLLQRHP-----PPGCPRFRVFDEQACARVIA 135


>gi|120402801|ref|YP_952630.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955619|gb|ABM12624.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
          Length = 1086

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 24/161 (14%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E S  + L   T  +  + +       V A AG+GKT  +  RV+ L+    A P  +L 
Sbjct: 10  ELSRALGLFEPTDEQAAVIAAEPGPLVVIAGAGAGKTETMAARVVWLVANGYARPGEVLG 69

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA        +++         +  A +    G      D              
Sbjct: 70  LTFTRKAAG-------QLLRRVRARLARLAGAGLMIPTGGADFADD-------------- 108

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
              + + T HAF   ++++F L   +     +  E +  +L
Sbjct: 109 --PVTISTYHAFAGNLLREFGLLLPVEPDTRLLGETELWQL 147


>gi|148263902|ref|YP_001230608.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
 gi|146397402|gb|ABQ26035.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
          Length = 620

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 42/172 (24%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            +  +      +  V A  GSGKT +L +R+ RLL        +L LT T  AA EM  R
Sbjct: 9   QQATVVEHVEGALLVIAGPGSGKTRVLTERIRRLLTVIPGHFRVLALTFTNKAANEMKER 68

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +                             SD+   R              V T+H+FC 
Sbjct: 69  L-----------------------------SDLGDVRQ----------RAFVGTLHSFCL 89

Query: 142 AIMQQFPLEANITSHFAIADE-EQSKKLIEEAK--KSTLASIMLDNNEELKK 190
            ++ +      +TS   I ++    K+++ +A      L+  +    +   +
Sbjct: 90  DMLTERGKLVGVTSLPHIFEQFSDRKEILHKAVLQDPLLSDELDRAGDAKAR 141


>gi|255034727|ref|YP_003085348.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
 gi|254947483|gb|ACT92183.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
          Length = 932

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 87/205 (42%), Gaps = 45/205 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----AHPSTLLCLTHT 71
           +++ T  +Q   S+  ++  + A AGSGKT  +  ++  LLL        P  ++  T+T
Sbjct: 1   MLNFTPDQQRAISENDKNLRIIACAGSGKTSTVAAKITHLLLGENNAAVEPRNIIAFTYT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AAAE+ ++VL+ I     L +                              ++    +
Sbjct: 61  EKAAAELRNKVLKTIKEDDRLKN------------------------------VQAIADM 90

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEEL-- 188
            + TIH +C   +Q+   +      F++ D+ + +  +++  K   ++ +   +N+++  
Sbjct: 91  YIGTIHGWCLKALQENEYQ---YQKFSVLDDIKLRLFVDKNYKKIGMSDVTKVSNDDITM 147

Query: 189 -----KKAFYEILEISNDEDIETLI 208
                 K F +++ +  + +++  +
Sbjct: 148 QIFVDTKRFIQLMNVIRESELDGEL 172


>gi|310639683|ref|YP_003944441.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2]
 gi|309244633|gb|ADO54200.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2]
          Length = 747

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 24/169 (14%)

Query: 22  SEQLLASDPTRSA----WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
            EQ    D  R       VSA AGSGKT  +V  VL+L+     +      +T T  A+ 
Sbjct: 12  EEQAAIVDSVRDTEKITIVSAGAGSGKTRTMVATVLQLIDDGEVNIDDFALITFTNKASD 71

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+   +                    K+  K++    R   I   E      + TI
Sbjct: 72  EMRERLENGVYDRV----------------KEAEKNNDFTQRTRWIEQKERIASTFIGTI 115

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           H FC  ++  F    +I     I     +K   + A K T++  + + +
Sbjct: 116 HKFCTMLLLNFGYTEHIAHESQILM---AKHYFKTALKKTMSEALDNPD 161


>gi|157164973|ref|YP_001467057.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Campylobacter
           concisus 13826]
 gi|157101490|gb|EAT97790.2| ATP-dependent DNA helicase PcrA [Campylobacter concisus 13826]
          Length = 689

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 37/190 (19%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  ++++  A+    +  + A AGSGKT  +  R+  L+       +  L LT T  A
Sbjct: 5   LSNLNEAQREAATHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIDAANTLTLTFTNKA 64

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R + +++        +L                                     
Sbjct: 65  ANEMRSRAMAMLSQSGKNYSPLLC------------------------------------ 88

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H F    ++ +  +    ++F I D +  K++I+  +     +I+       K +   
Sbjct: 89  TFHKFGLLFLKLYIEKLGRKNNFVIIDTDDKKRIIKSFESPVATAILSSEISNYKNSLLS 148

Query: 195 ILEISNDEDI 204
           + E+  + + 
Sbjct: 149 VEEVYKNANF 158


>gi|259909490|ref|YP_002649846.1| exonuclease V subunit beta [Erwinia pyrifoliae Ep1/96]
 gi|224965112|emb|CAX56644.1| Exodeoxyribonuclease V beta chain [Erwinia pyrifoliae Ep1/96]
 gi|283479564|emb|CAY75480.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Erwinia pyrifoliae DSM 12163]
          Length = 1178

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRV---------LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +                         +L +T T+AA AE+  R+   
Sbjct: 21  LIEASAGTGKTFTIGLLYLRLLLGLGGAAAFSRPLSVEEILVVTFTEAATAELRGRIRAN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S  +  +       +D+ +A  +L+          + TIH FC+ ++ 
Sbjct: 81  IHELRIACIRGKSPNLM-LAALIAEIADLPQAASVLLAAEHQMDEAGIFTIHGFCQRMLN 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + ++E    L   A       
Sbjct: 140 LNAFESGMLFDQQLLEDE--TPLRRRAAADFWRR 171


>gi|270307688|ref|YP_003329746.1| UvrD/REP helicase [Dehalococcoides sp. VS]
 gi|270153580|gb|ACZ61418.1| UvrD/REP helicase [Dehalococcoides sp. VS]
          Length = 972

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 62/242 (25%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L ++   +Q   A D  R     A AGSGK+  L  R+ RLL     P  ++  T T+ A
Sbjct: 8   LRNELTPQQYNAAVDTAREVLCLACAGSGKSRTLAYRIARLLAEGEPPEGIVAFTFTEKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           +  +  RV + +T     +                                   G + + 
Sbjct: 68  SESIKRRVSQALTTAGLDAT--------------------------------VMGAMYIG 95

Query: 135 TIHAFCEAIMQQFPLEANITSHFA---IADEEQSKK-LIEEAKKSTLA------------ 178
           TIH++C+ I+       +I + +    + D+ + K  LI    +  L             
Sbjct: 96  TIHSYCQHIL------GDIDAKYRQYDVLDDNRLKLYLISRYYQLGLQGFRPRAQNNSYF 149

Query: 179 SIMLDNNEELKKAFYEILEI----SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             +   +E  K    E+L+     + D+D+  L+   I  R+ L+   +    L  R ++
Sbjct: 150 DTIKQASEAWKTTNDELLDFNAVAAEDQDVGDLL---IRIRSGLREDQYIDFSLMIRDVV 206

Query: 235 EK 236
           + 
Sbjct: 207 DS 208


>gi|84687759|ref|ZP_01015631.1| Possible DNA helicase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664260|gb|EAQ10752.1| Possible DNA helicase [Rhodobacterales bacterium HTCC2654]
          Length = 1569

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 54/215 (25%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
            Q ++E +D +  T   Q++  D  + +  V A  GSGKT +LV RV  L+ +    P+ +
Sbjct: 945  QTYAEIVDDLGNTTQAQIVRDDREQTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGI 1004

Query: 66   LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
            L L + + AAAE+  R+  +I   +                                   
Sbjct: 1005 LVLAYNRHAAAEIRERLRRLIGDDARF--------------------------------- 1031

Query: 126  ETPGGLKVQTIHAFCEAIM-QQFPLEANI-TSHFAIADEEQSKKLI--------EEAKKS 175
                 + V TIHA    ++   F   A   T  F     + ++ L          EA + 
Sbjct: 1032 -----VTVLTIHALAMRLVGASFAGRAGAETPDFDTLLTDAARLLRGDGLDKVEAEALRE 1086

Query: 176  TL----ASIMLDNNEELKKAFYEILEISNDEDIET 206
            TL      I++D  +++    Y ++       I+ 
Sbjct: 1087 TLIQGFRWILVDEYQDVGPEEYALIAAVAGRSIDD 1121


>gi|317181161|dbj|BAJ58947.1| DNA helicase II [Helicobacter pylori F32]
          Length = 681

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL------------IEEAKKSTLASIML 182
           T H F    ++Q          F++ D +++K L            I + K   +   M 
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDETKTLCKQLKISSFRASISQIKNGMIDLSMQ 150

Query: 183 DNN-EELKKAFYEILEISNDEDIETLI 208
           D+   +  + +   L+  N  D + L+
Sbjct: 151 DSECHKAYELYQNALKKDNLVDFDDLL 177


>gi|317154187|ref|YP_004122235.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944438|gb|ADU63489.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 1047

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I+   ++Q           V A  G+GKT  L+ RV RL+        +L LT T+ AA 
Sbjct: 475 IAPNPAQQAAIDAGPGPVLVLAGPGTGKTQTLMGRVARLIKQGEPARRILALTFTRRAAQ 534

Query: 77  EMSHRVLEIITAWSHLSDEILSAEIT-----KIQGKKPNKSDMSKARHLLITILETPGG 130
           E+  R+  +    + L        +          + P     + A+ L   +     G
Sbjct: 535 ELRDRLKTLRGENAELPQAGTLHSLCFDYWKHAYSETPIVLPEAAAKKLFAEVNPEFAG 593


>gi|158522126|ref|YP_001529996.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
 gi|158510952|gb|ABW67919.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
          Length = 616

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 37/153 (24%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
             ++         A V+A AGSGKT  L  ++  L+     P  +L +T T  AA EM  
Sbjct: 7   PQQEAAVLHMGSPALVTAGAGSGKTRTLTAKIAHLISLGYPPERILAITFTNKAADEMKR 66

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R++ +                                       +   G   V+T H+ C
Sbjct: 67  RLVALTG-------------------------------------IPETGFPWVRTYHSAC 89

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
             I+         T+   I D    +K I +  
Sbjct: 90  YKILCVHCGLLGYTTPLQIYDTYHQRKTITDVL 122


>gi|308064238|gb|ADO06125.1| DNA helicase II [Helicobacter pylori Sat464]
          Length = 681

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L +  +++++ AS       + A AGSGKT  L  R+  L+          L LT T  A
Sbjct: 8   LDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGTCGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL------------IEEAKKSTLASIML 182
           T H F    ++Q          F++ D ++ K L            I + K   +   M 
Sbjct: 91  TFHRFGLLFLRQHMNLLKRACDFSVLDSDEVKTLCKQLKISSFRASISQIKNGMIDLSMQ 150

Query: 183 DNN-EELKKAFYEILEISNDEDIETLI 208
           D+   +  + +   L+  N  D + L+
Sbjct: 151 DSECHKAYELYQNALKKDNLVDFDDLL 177


>gi|237753157|ref|ZP_04583637.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375424|gb|EEO25515.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 697

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 15  DLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           D +     S++  A+    +  + A AGSGKT  +  R+  L+ +    P   L LT T 
Sbjct: 3   DFLDDLNPSQREAATTIDGALLILAGAGSGKTKTITARLAYLIDVVGIPPGNTLTLTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  R L +I   +     +                                    
Sbjct: 63  KAAGEMQKRALNMIQNTTMHPPLL------------------------------------ 86

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             T H F    ++ +       ++F +AD E +K++I++  +  
Sbjct: 87  -CTFHKFGLLFLKFYITHLGRKANFILADSEDTKRIIKDLNEDL 129


>gi|167893639|ref|ZP_02481041.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei 7894]
          Length = 343

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL        +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|312139063|ref|YP_004006399.1| exodeoxyribonuclease v beta subunit recb [Rhodococcus equi 103S]
 gi|311888402|emb|CBH47714.1| exodeoxyribonuclease V beta subunit RecB [Rhodococcus equi 103S]
          Length = 1103

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           A  P  +  + A+AG+GKT+ +V    R +   +   S LL +T ++AA  E+  R  E 
Sbjct: 16  APLPQGTTVLEASAGTGKTYAIVGLAARFVAEEDVDLSQLLLVTFSRAATKELRERTRER 75

Query: 86  ITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
             + +    + ++A  ++          + ++++  R  L+  L       + T H+FC+
Sbjct: 76  FASAAAGLADPIAARASEDPLVAHLADTDDAEIALRRRRLMQALSDFDAGTIVTTHSFCQ 135

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            ++    +         + +E +   L+ E             + 
Sbjct: 136 RMLDGLGIAGERDPDAVLVEEAE--DLVAEVIADLFLHRFARADS 178


>gi|261840154|gb|ACX99919.1| DNA helicase II [Helicobacter pylori 52]
          Length = 681

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ AS       + A AGSGKT  L  R++ L+ A        L LT T  A
Sbjct: 8   LDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLVYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLD 183
           T H F    ++Q          F++ D +++K L ++ K           K+ +  + + 
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDETKTLCKQLKISSFRASISQIKNGMMDLSMQ 150

Query: 184 NNE--ELKKAFYEILEISNDEDIETLI 208
           ++E  +  + +   L+  N  D + L+
Sbjct: 151 DSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|188574507|ref|YP_001911436.1| ATP-dependent DNA helicase Rep [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188518959|gb|ACD56904.1| ATP-dependent DNA helicase Rep [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 640

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 38/159 (23%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             V A AGSGKT ++V+++  L+    +P   +  +T T  +A EM  RV + I      
Sbjct: 1   MLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMGERVAKRIRG---- 56

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                            +   GL + T HA     +Q     A 
Sbjct: 57  ---------------------------------DGADGLTICTFHALGLKFLQIEHAAAG 83

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           +   F+I D + +   I++         + D    + +A
Sbjct: 84  LKRGFSIFDSDDAAAQIKDLMHGAKPDAIEDAKNLISRA 122


>gi|288560368|ref|YP_003423854.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
 gi|288543078|gb|ADC46962.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
          Length = 855

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 91/198 (45%), Gaps = 24/198 (12%)

Query: 6   SFQEHSETI------DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LA 58
           S++E  + +      D+ S +  +  +++D ++S ++ A  GSGKT ++V ++L+ + + 
Sbjct: 3   SYEEFEKLVVEILERDISSNSDQKAAISADKSQSLFIVAGPGSGKTTVMVLKILKFIFVD 62

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           +  P  +L  T TK AA+E+  R+L             +  ++  + G+  + S + K R
Sbjct: 63  DVQPKEILATTFTKKAASELLSRILSWGDKLKKKIPVFIMDKV--MNGEMADGSVVDKVR 120

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            +          + V TI +  + +++    +A  TS   + ++  +  ++       + 
Sbjct: 121 KI------DFNQINVGTIDSIADELLRVH-RDAG-TSQPILIEDFVANSVM-------IN 165

Query: 179 SIMLDNNEELKKAFYEIL 196
             +L N+  L ++  E L
Sbjct: 166 ECLLKNDMYLHESLQEYL 183


>gi|323487050|ref|ZP_08092359.1| UvrD/REP helicase [Clostridium symbiosum WAL-14163]
 gi|323399641|gb|EGA92030.1| UvrD/REP helicase [Clostridium symbiosum WAL-14163]
          Length = 1073

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 39/136 (28%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            +++ + E +       S  V A  G+GKT  L  R+L LL      PS +  +T T  A
Sbjct: 472 FLNENQKEAVTVLARAVS--VKAGPGTGKTGTLTARILHLLKERGVKPSEITAVTFTNKA 529

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAE+  R+ +       +                                      L + 
Sbjct: 530 AAELRQRLEKQAGGKKTVRL------------------------------------LNIG 553

Query: 135 TIHAFCEAIMQQFPLE 150
           T H+ C  I+++   E
Sbjct: 554 TFHSICLEILKENDFE 569


>gi|317014893|gb|ADU82329.1| putative ATP-dependent DNA helicase [Helicobacter pylori
           Gambia94/24]
          Length = 681

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ A        + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNEAQKIAACHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++   + +   +                                      
Sbjct: 68  SKEMQERALKLLNNQAFIPPLL-------------------------------------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLD 183
           T H F    ++Q          F++ D ++ K L ++ K           K+ +  + + 
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSMQ 150

Query: 184 NNE--ELKKAFYEILEISNDEDIETLI 208
           ++E  +  + +   L+  N  D + L+
Sbjct: 151 DSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|242240423|ref|YP_002988604.1| exonuclease V subunit beta [Dickeya dadantii Ech703]
 gi|242132480|gb|ACS86782.1| exodeoxyribonuclease V, beta subunit [Dickeya dadantii Ech703]
          Length = 1189

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL----ANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ L    LRLLL     NA+P       +L +T T+AA  E+  R+ + 
Sbjct: 21  LIEASAGTGKTYTLAGLYLRLLLGLGGENAYPRPLSVEEILVVTFTEAATQELRDRIRDK 80

Query: 86  ITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I +         S E + K+   +   +  ++A  +L+          V TIH FC+ ++
Sbjct: 81  IHSLYLACLRNESDEPLVKLLLAEIPDAFRAEAAQVLLRAERQMDEAAVHTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                E+ +     + ++E    L  +A       
Sbjct: 141 ATNAFESGVLFEQRLVEDE--TPLYRQACADFWRR 173


>gi|224418438|ref|ZP_03656444.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491]
 gi|253827754|ref|ZP_04870639.1| putative helicase [Helicobacter canadensis MIT 98-5491]
 gi|313141969|ref|ZP_07804162.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491]
 gi|253511160|gb|EES89819.1| putative helicase [Helicobacter canadensis MIT 98-5491]
 gi|313131000|gb|EFR48617.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491]
          Length = 674

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   +Q  AS  P+    + A+AG+GKT  +V R+  LL +   P+ +L LT T  AA
Sbjct: 3   LSKLNDQQREASLAPSGYNLIIASAGTGKTSTIVGRISYLLESGILPNEILLLTFTNKAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+     +      E  +      +  K   S + K    L  + ++    ++ T
Sbjct: 63  QEMLKRLELRFDSRIVKQIEAGTFHAVAYRYLKNKNSIILKQPRELKVLFKSLYDKRIFT 122


>gi|21323542|dbj|BAB98169.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 1073

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 19/148 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           + T  +  +         V A AG+GKT  +  RV+ L+      P  +L LT T+ AA 
Sbjct: 21  APTDQQSAIIGSEPGPLLVVAGAGAGKTETMAARVVWLVANGFVAPDQVLGLTFTRKAAQ 80

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++S R+ + +   + +          +++   P        + +  T         V T 
Sbjct: 81  QLSQRIRKRLETLAGVP---------RLKDIDPTGQLEKNLQAITPT---------VSTY 122

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164
            ++   +++++ L   +     +  + +
Sbjct: 123 DSYAGTLIREYGLLLPVEPSARLITQTE 150


>gi|167569499|ref|ZP_02362373.1| exodeoxyribonuclease V, beta subunit [Burkholderia oklahomensis
           C6786]
          Length = 554

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL        +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGGDGNDPFVARLFETTLSPERGIDPETAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|145294939|ref|YP_001137760.1| hypothetical protein cgR_0885 [Corynebacterium glutamicum R]
 gi|140844859|dbj|BAF53858.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1070

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 19/148 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           + T  +  +         V A AG+GKT  +  RV+ L+      P  +L LT T+ AA 
Sbjct: 18  APTDQQSAIIGSEPGPLLVVAGAGAGKTETMAARVVWLVANGFVAPDQVLGLTFTRKAAQ 77

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++S R+ + +   + +          +++   P        + +  T         V T 
Sbjct: 78  QLSQRIRKRLETLAGVP---------RLKDIDPTGQLEKNLQAITPT---------VSTY 119

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164
            ++   +++++ L   +     +  + +
Sbjct: 120 DSYAGTLIREYGLLLPVEPSARLITQTE 147


>gi|32266857|ref|NP_860889.1| DNA helicase II [Helicobacter hepaticus ATCC 51449]
 gi|32262909|gb|AAP77955.1| DNA helicase II [Helicobacter hepaticus ATCC 51449]
          Length = 704

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 38/155 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +S   +++        +  + A AGSGKT  +  R+  L+      PS  L LT T  AA
Sbjct: 21  VSLNDAQKQAVEHIDGAMLILAGAGSGKTKTITTRLAYLIDEVGIPPSATLTLTFTNKAA 80

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R                                   A  LL    E+P  L   T
Sbjct: 81  QEMRER-----------------------------------ALTLLHNRYESPPLL--CT 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            H F    ++         ++F + D +  + +++
Sbjct: 104 FHRFGLLFLRFHITALGRNANFVVLDTDDKRAILK 138


>gi|77361677|ref|YP_341252.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876588|emb|CAI87810.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 653

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 38/144 (26%)

Query: 37  SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
            A AGSGKT ++  ++  L+         +  +T T  AA EM  RVL+ +         
Sbjct: 2   LAGAGSGKTRVITNKIAYLVKKCEYKARNIAAVTFTNKAAKEMRERVLQTLGK------- 54

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                         +   GL V T H     I+++         
Sbjct: 55  ------------------------------QDAKGLWVSTFHTLGLEIIKKELSTLGFKP 84

Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179
            F++ D++ + +L+ +  +  L +
Sbjct: 85  GFSLFDDQDTNQLLNDLTEDELKN 108


>gi|19552002|ref|NP_600004.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389665|ref|YP_225067.1| DNA helicase II protein [Corynebacterium glutamicum ATCC 13032]
 gi|41325000|emb|CAF19481.1| PROBABLE DNA HELICASE II PROTEIN [Corynebacterium glutamicum ATCC
           13032]
          Length = 1070

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 19/148 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           + T  +  +         V A AG+GKT  +  RV+ L+      P  +L LT T+ AA 
Sbjct: 18  APTDQQSAIIGSEPGPLLVVAGAGAGKTETMAARVVWLVANGFVAPDQVLGLTFTRKAAQ 77

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++S R+ + +   + +          +++   P        + +  T         V T 
Sbjct: 78  QLSQRIRKRLETLAGVP---------RLKDIDPTGQLEKNLQAITPT---------VSTY 119

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164
            ++   +++++ L   +     +  + +
Sbjct: 120 DSYAGTLIREYGLLLPVEPSARLITQTE 147


>gi|317182683|dbj|BAJ60467.1| DNA helicase II [Helicobacter pylori F57]
          Length = 681

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLD 183
           T H F    ++Q          F++ D +++K L ++ K           K+ +  + + 
Sbjct: 91  TFHRFGLLFLRQHMGLLKRACDFSVLDSDETKTLCKQLKISSFRASISQIKNGMIDLSMQ 150

Query: 184 NNE--ELKKAFYEILEISNDEDIETLI 208
           ++E  +  + +   L+  N  D + L+
Sbjct: 151 DSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|167562258|ref|ZP_02355174.1| exodeoxyribonuclease V, beta subunit [Burkholderia oklahomensis
           EO147]
          Length = 537

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL        +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGNDPFVARLFETTLSPERGIDPETAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|72160928|ref|YP_288585.1| DNA helicase [Thermobifida fusca YX]
 gi|71914660|gb|AAZ54562.1| putative DNA helicase [Thermobifida fusca YX]
          Length = 1108

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           + +  + L   T  +  + + P R   V A AGSGK+  +  RV+ L+      P  +L 
Sbjct: 9   QLARLLGLPEPTPEQAAVIAAPLRPGLVVAGAGSGKSETMAARVVWLVANGHVRPEQVLG 68

Query: 68  LTHTKAAAAEMSHRVLEI---ITAWSHLSDEILSAEIT 102
           LT T+ AAAE++ RV +    +     + D++L  E T
Sbjct: 69  LTFTRKAAAELAERVRKRLDQLRGAGVVPDDVLDGEPT 106


>gi|302325472|gb|ADL24673.1| UvrD/REP helicase domain protein/acyltransferase domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 744

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 16  LISQTKSEQLLAS----DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L+    S+Q  A     +      + A AGSGKT +L +R+   +++   P  +L LT T
Sbjct: 6   LLVGLNSDQRAAVLHDHEKNGQLLILAGAGSGKTSVLTKRIQYRIMSGVEPEKILALTFT 65

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
             AAAEM  RV ++            S  +  ++ K P   D + A
Sbjct: 66  AKAAAEMRERVQKLFPNAGVRLCTFHSLALFVLKSKVPVGYDEACA 111


>gi|317012720|gb|ADU83328.1| Rep helicase [Helicobacter pylori Lithuania75]
          Length = 675

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|111225322|ref|YP_716116.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152854|emb|CAJ64601.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 1291

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 88/250 (35%), Gaps = 65/250 (26%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLT 69
              +D +     ++  A+ P     V A  G+GKT  LV  +   +     P    L +T
Sbjct: 627 PSVLDGLD--PDQRRAAAHPAGPLLVLAGPGTGKTRTLVHAIAHRVAERDVPAEQCLAVT 684

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA E++ R+  ++ A                           +AR +L        
Sbjct: 685 FTRRAAGELAERLDAMLGA---------------------------RARRVLA------- 710

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE---------EAKKST---- 176
                T H     I+++        +   +AD+    +L++          A++      
Sbjct: 711 ----TTFHGLGLTIVREQHERLARGAQVQVADDAVRVELLDAALHGEGDSRARRRVSAGI 766

Query: 177 --------LASIMLDNNEELKKAFYEI-LEISNDEDIETLIS-DIISNRTALKLIFFFFS 226
                   L  +  D++     A Y+  L   +  D++ LI+  +   R+A +L+  + +
Sbjct: 767 AELKRLRALGQVQRDHDLVGVLARYDAELRERDMVDLDDLIALPLTLLRSAPELVEHYRA 826

Query: 227 YLWRRKIIEK 236
             WR   +++
Sbjct: 827 -RWRHVWVDE 835


>gi|289628785|ref|ZP_06461739.1| UvrD/REP helicase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330870252|gb|EGH04961.1| UvrD/REP helicase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 599

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 42/161 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
                Q+ A +   S ++ A  GSGKT  L  ++ RLL    +    ++ +T+T  AA E
Sbjct: 8   DLNDAQVAAIEHPGSVFLVACPGSGKTRTLTYKIARLLSELKSDKKRVVAITYTHRAADE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++    S                                        L + TIH
Sbjct: 68  IHERIEQLGVDTSQ---------------------------------------LWIGTIH 88

Query: 138 AFCE-AIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKST 176
           +FC   I++ +    + +   F + +   ++++ EE   + 
Sbjct: 89  SFCLEWILKPYGIYHSELKHGFRVINAHDTERMHEELCSAV 129


>gi|34557966|ref|NP_907781.1| ATP-dependent helicase [Wolinella succinogenes DSM 1740]
 gi|34483684|emb|CAE10681.1| ATP-DEPENDENT HELICASE [Wolinella succinogenes]
          Length = 675

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 46/217 (21%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + L S    +Q  +S P     + A+AG+GKT  +V R+  L+     P  +L LT T  
Sbjct: 1   MPLSSLNAEQQAASSAPLGHNLIIASAGTGKTSTIVGRIAHLMHQGITPQEILLLTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+  +       + E                                      
Sbjct: 61  AANEMISRLAALFGESKAKAVEA------------------------------------- 83

Query: 134 QTIHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            T HA     +++ F +              + K L +   +  +               
Sbjct: 84  GTFHAVAYRYLKEKFAVSLKQP--------RELKTLFKSIYERRVFVQRSSQPPYTANYL 135

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLW 229
           Y++  +  +   E  I  +   +    L    +   W
Sbjct: 136 YDLYSLYQNSTSEPFIEWMKKRQADQALYLDIYEDAW 172


>gi|167718946|ref|ZP_02402182.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           DM98]
          Length = 360

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|291519610|emb|CBK74831.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
           16/4]
          Length = 565

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 48/192 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++    ++           V A  GSGKT +L QRV  L+ +    + +L +T TKAAA 
Sbjct: 1   MNLNAPQRQAVFHKEGPCLVIAGPGSGKTAVLTQRVKELINSGVPANEVLVITFTKAAAI 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R                                          + E    +   T 
Sbjct: 61  EMKER---------------------------------------FERLSEERAPVTFGTF 81

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    I+Q+   E     +  I      +++  EA       +  ++  E+ K +  + 
Sbjct: 82  HSLFWGIIQK---ELGYK-NCDIIMGAAKERVYREAMH-----LAGEDEAEIPKKYQFLK 132

Query: 197 EISNDEDIETLI 208
           +  +  D + ++
Sbjct: 133 DKYHVLDFDDML 144


>gi|126179428|ref|YP_001047393.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
 gi|125862222|gb|ABN57411.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
          Length = 911

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 35/157 (22%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79
             ++           + A AG+GKT  L +R++ LLL     PS ++  T T+ AA  M 
Sbjct: 21  DRQRRAVLCDRTHIRIIAGAGAGKTETLTRRIVYLLLVQQVEPSAIVAFTFTEKAAQSMK 80

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV E +                                     I    G + + TIH +
Sbjct: 81  SRVYERVKHLGG------------------------------DEICARLGEMFIGTIHGY 110

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           C  ++++          + + DE+Q    +     + 
Sbjct: 111 CYRLLEEHFGY----GDWGVLDEKQEMAYLMRVGWAL 143


>gi|262369962|ref|ZP_06063289.1| ATP-dependent DNA helicase pcrA [Acinetobacter johnsonii SH046]
 gi|262315001|gb|EEY96041.1| ATP-dependent DNA helicase pcrA [Acinetobacter johnsonii SH046]
          Length = 662

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 41/165 (24%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
             +  ID ++    ++  A+  ++ + V A AG GKT  +V R   L+      + +  L
Sbjct: 2   SLASLIDELN--PQQKQAATTESQHSLVLAGAGCGKTKTIVARAAYLIDQGIPANQIQIL 59

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ +A+E+  RV   +                                       E  
Sbjct: 60  TFTRRSASEIVARVELALG--------------------------------------EQA 81

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            GL+  T H FC  ++++ P    +   F+I D +    +    +
Sbjct: 82  KGLRASTFHTFCMYLLRRVPKAFGLE-QFSIIDRDDQLMMFRLIR 125


>gi|261415103|ref|YP_003248786.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371559|gb|ACX74304.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 744

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 16  LISQTKSEQLLAS----DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L+    S+Q  A     +      + A AGSGKT +L +R+   +++   P  +L LT T
Sbjct: 6   LLVGLNSDQRAAVLHDHEKNGQLLILAGAGSGKTSVLTKRIQYRIMSGVEPEKILALTFT 65

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
             AAAEM  RV ++            S  +  ++ K P   D + A
Sbjct: 66  AKAAAEMRERVQKLFPNAGVRLCTFHSLALFVLKSKVPVGYDEACA 111


>gi|169630592|ref|YP_001704241.1| DNA helicase II [Mycobacterium abscessus ATCC 19977]
 gi|169242559|emb|CAM63587.1| Probable DNA helicase II homolog UvrD2 [Mycobacterium abscessus]
          Length = 689

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 5/126 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            +D +     ++   + P     V A AG+GKT  +  R+  L+ +       +L +T T
Sbjct: 5   LLDGLDD--EQRAAVTAPRGPVCVLAGAGTGKTRTITHRIAYLVASGHVAAGQILAVTFT 62

Query: 72  KAAAAEMSHRVLEI--ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           + AA EM  R+ ++   +A +         ++     +    +           + +   
Sbjct: 63  QRAAGEMRGRLRDLGVGSAQAVTFHAAGLRQLRYFWPQLVGDTRWELIDSKFTLVAQAAN 122

Query: 130 GLKVQT 135
             KV T
Sbjct: 123 RAKVST 128


>gi|260904113|ref|ZP_05912435.1| UvrD/REP helicase [Brevibacterium linens BL2]
          Length = 1061

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 27/150 (18%)

Query: 22  SEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            EQ +   +DP +S  V+A AGSGKT ++ QRV+ L+      P  +L LT T+ A  E+
Sbjct: 24  EEQRIIIEADPQQSMKVTAGAGSGKTTVISQRVIWLVANGFVDPEEILGLTFTRKAVGEL 83

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  ++    H  +  L +E+T      P                       V T ++
Sbjct: 84  GGRIRVLLARLRH--NLGLGSEMTLPGLDNP----------------------TVSTYNS 119

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           +  +I+ +  +   I     + DE  +  +
Sbjct: 120 YAASIVSEHGVSIGIEPETVLLDEAAAHTI 149


>gi|308062742|gb|ADO04630.1| DNA helicase II [Helicobacter pylori Cuz20]
          Length = 681

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL------------IEEAKKSTLASIML 182
           T H F    ++Q          F++ D ++ K L            I + K   +   M 
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISSFRASISQIKNGMIDLSMQ 150

Query: 183 DNN-EELKKAFYEILEISNDEDIETLI 208
           D+   +  + +   L+  N  D + L+
Sbjct: 151 DSECHKAYELYQNALKKDNLVDFDDLL 177


>gi|323698557|ref|ZP_08110469.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323458489|gb|EGB14354.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1032

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++   ++Q           V A  G+GKT  L+ RV RL+    +P  +L LT T+ AA 
Sbjct: 460 LAYNDAQQAAIDAGPGPVLVLAGPGTGKTQTLMGRVERLMDEGVNPKRILALTFTRRAAQ 519

Query: 77  EMSHRVLEIITAWSHLSDE 95
           E+  R+  +    + +   
Sbjct: 520 ELRDRLRALRGENADMPQA 538


>gi|257470506|ref|ZP_05634596.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317064713|ref|ZP_07929198.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313690389|gb|EFS27224.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 617

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 20/210 (9%)

Query: 14  IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I+   +   EQL A         V A AGSGKT  +V R   ++        +L LT TK
Sbjct: 27  INYSKELNEEQLRALTFIEGQYLVIAGAGSGKTRTIVYRTAFMIEKGLAEENILMLTFTK 86

Query: 73  AAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            AA EM  R+  +     + +S     +   ++  K  N   + K    L  I E     
Sbjct: 87  KAALEMKERLENLTENRENKVSISTFHSLCAELLIKYKNIFGIEK----LNIIDENRNST 142

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHF----AIADEEQSKKLIEEAKKSTL---ASIMLDN 184
            +         +++++ L+     +F     + +  ++ +  ++     L       L+ 
Sbjct: 143 VIS-------LLIREYSLKDKNKGNFLSEKRVIEIFEAARSRKKDMSEFLNEKEKGYLEE 195

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISN 214
            E LK  +    +     D E LI  ++  
Sbjct: 196 LEFLKIKYRRFKKEFQMYDFEDLIEKVLRK 225


>gi|326334227|ref|ZP_08200450.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1]
 gi|325948018|gb|EGD40135.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1]
          Length = 1074

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79
           + +    + P   A V A AGSGKT ++  RV+ L+      P  +L LT T  A AE++
Sbjct: 24  EEQFRAITAPLEPAVVIAGAGSGKTAVMAARVVWLVATGRVLPGEVLGLTFTTKATAELA 83

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ E +       +        +    +P +              E P    V T H++
Sbjct: 84  TRIRESLQKAGLWPE-------RREGPPRPGED-----------AEEEPTEPTVATYHSY 125

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              ++ +  L         +  +    +L   A   
Sbjct: 126 ASGLLSEHGLRIGHEPDTRLIADATRYQLAARAVAR 161


>gi|210135102|ref|YP_002301541.1| Rep helicase [Helicobacter pylori P12]
 gi|210133070|gb|ACJ08061.1| Rep helicase [Helicobacter pylori P12]
          Length = 675

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|261838752|gb|ACX98518.1| DNA helicase II [Helicobacter pylori 51]
          Length = 681

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL------------IEEAKKSTLASIML 182
           T H F    ++Q          F++ D ++ K L            I + K   +   M 
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISSFRASISQIKNGMIDLSMQ 150

Query: 183 DNN-EELKKAFYEILEISNDEDIETLI 208
           D+   +  + +   L+  N  D + L+
Sbjct: 151 DSECHKAYELYQNALKKDNLVDFDDLL 177


>gi|300932818|ref|ZP_07148074.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
          DSM 45100]
          Length = 690

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 15 DLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          D+++    EQ   A+ P     + A AG+GKT  +  R+  L+     +P  +L +T T 
Sbjct: 3  DILAGLDPEQLRAATAPRGPVAIIAGAGTGKTRTITHRIAHLVEGGYVNPDRVLAVTFTN 62

Query: 73 AAAAEMSHRVLEI 85
           AAAE+  R+  +
Sbjct: 63 RAAAELRERLARM 75


>gi|78776939|ref|YP_393254.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
 gi|78497479|gb|ABB44019.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
          Length = 692

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 17  ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQ + A+       + A+AG+GKT  +V R+  LL     PS +L LT T  +A
Sbjct: 3   LSRLNEEQYVAATSKELQNLIIASAGTGKTSTIVGRIAHLLENGVEPSQILLLTFTNKSA 62

Query: 76  AEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           AEM  RV E       S +      A   +   K   K  + + R L
Sbjct: 63  AEMVSRVAEFFGKDIASKIDAGTFHAVSYRWLKKHDKKVVLKQQREL 109


>gi|208435346|ref|YP_002267012.1| DNA helicase II [Helicobacter pylori G27]
 gi|208433275|gb|ACI28146.1| DNA helicase II [Helicobacter pylori G27]
          Length = 682

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 51/201 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           ++++ AS       + A AGSGKT  L  R+  L+ +        L LT T  A+ EM  
Sbjct: 15  AQRIAASHVQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKEMQE 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R L+++   + +   +                                      T H F 
Sbjct: 75  RALKLLKNQALIPPLL-------------------------------------CTFHRFG 97

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLDNNE--E 187
              ++Q          F++ D ++ K L ++ K           K+ +  + + ++E  +
Sbjct: 98  LLFLRQHMNLLKRACDFSVLDSDEVKTLCKQLKISNFRANISQIKNGMMDLSVQDSECHK 157

Query: 188 LKKAFYEILEISNDEDIETLI 208
             + +   L+  N  D + L+
Sbjct: 158 AYELYQNALKKDNLVDFDDLL 178


>gi|109947811|ref|YP_665039.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715032|emb|CAK00040.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 672

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   AS       + A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAASALQGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A++EM  RV +     S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASSEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|115378634|ref|ZP_01465785.1| ATP-dependent exoDNAse beta subunit, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364346|gb|EAU63430.1| ATP-dependent exoDNAse beta subunit, putative [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1134

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 10/155 (6%)

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            LT T  AAAEM  R    + A +     +  L A + ++    P +      R  L   
Sbjct: 1   MLTFTDKAAAEMRARTRSRLDALAQAEAKEPELRASLERLDRPFPAQDAWRAMREEL--- 57

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
               G   + T H+ C  ++++ P    I   F + DE ++  L+++  +  +   +   
Sbjct: 58  ----GSATLGTFHSLCGQLLRRAPPGLGIDPSFEVLDELEASNLVQDVCERVVLDALEAG 113

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALK 219
           +  + +   E+    +    + L++ +      L+
Sbjct: 114 DARVSELCQELTFSGSGF-ADGLVASLRQVYAKLR 147


>gi|15611914|ref|NP_223565.1| putative ATP-dependent helicase [Helicobacter pylori J99]
 gi|4155417|gb|AAD06425.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
          Length = 676

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   AS       + A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAASALQGHNLIIASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|320331238|gb|EFW87187.1| UvrD/REP helicase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 436

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 42/161 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
                Q+ A +   S ++ A  GSGKT  L  ++ RLL    +    ++ +T+T  AA E
Sbjct: 8   DLNDAQVAAIEHPGSVFLVACPGSGKTRTLTYKIARLLSELKSDKKRVVAITYTHRAADE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++    S                                        L + TIH
Sbjct: 68  IHERIEQLGVDTSQ---------------------------------------LWIGTIH 88

Query: 138 AFCE-AIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKST 176
           +FC   I++ +    + +   F + +   ++++ EE   + 
Sbjct: 89  SFCLEWILKPYGIYHSELKHGFRVINVHDTERMHEELCSAV 129


>gi|317178183|dbj|BAJ55972.1| DNA helicase II [Helicobacter pylori F16]
          Length = 681

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  + +++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNEVQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLD 183
           T H F    ++Q          F++ D +++K L ++ K           K+ +  + + 
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDETKTLCKQLKISSFRANISQIKNGMMDLSMQ 150

Query: 184 NNE--ELKKAFYEILEISNDEDIETLI 208
           ++E  +  + +   L+  N  D + L+
Sbjct: 151 DSECHKAYELYQNALKKDNLVDFDDLL 177


>gi|296328158|ref|ZP_06870689.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154670|gb|EFG95456.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 1056

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 92/227 (40%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  + A+AG+GKT+ L    +  L             +L +T T+ A AE+   +L  +
Sbjct: 5   KNLVLKASAGTGKTYRLSLEYIIALCKKGDIEPIDYKNILVMTFTRKATAEIKEGILNKL 64

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-------------------- 126
           + +  + +   ++E++ I+    NK   +K R+  + ++E                    
Sbjct: 65  SEFMEIYEISKNSELSVIETISDNKLIDNKKRNNYLNLIESIKNIEPKLDIDNNFLENLS 124

Query: 127 --------TPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
                       LK+ TI AF   I +   +  N+     + + DEE +    ++  ++ 
Sbjct: 125 KVNKEIIKNKEKLKIYTIDAFFNIIFKN--IVTNLMKIKSYTMLDEEDNFSYYKKVLENI 182

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
                  NNE+L   F      +++++I+    +I  +IS+R    L
Sbjct: 183 F------NNEKLFNDFKNFFTENSEKNIDNYISIIQRLISSRWKYIL 223


>gi|297380667|gb|ADI35554.1| DNA helicase II [Helicobacter pylori v225d]
          Length = 681

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 53/210 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D +++  ++++ AS       + A AGSGKT  L  R+  L+ A        L LT T
Sbjct: 7   ILDHLNE--AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+ EM  R L+++   + +   +                                   
Sbjct: 65  NKASKEMQERALKLLKNQALIPPLL----------------------------------- 89

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASI 180
              T H F    ++Q          F++ D ++ K L ++ K           K+ +  +
Sbjct: 90  --CTFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISSFRASISQIKNGMIDL 147

Query: 181 MLDNNE--ELKKAFYEILEISNDEDIETLI 208
            + ++E  +  + +   L+  N  D + L+
Sbjct: 148 SMQDSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|240047396|ref|YP_002960784.1| ATP-dependent helicase PcrA [Mycoplasma conjunctivae HRC/581]
 gi|239984968|emb|CAT04961.1| ATP-dependent helicase PcrA [Mycoplasma conjunctivae]
          Length = 737

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 53/168 (31%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             +Q +A         + A AG+GKT +L +++  +++   A+P+ +L LT T  AA EM
Sbjct: 2   NEKQKIAVLSDHQYLRIVAGAGTGKTSVLTKKIAYIVIEKKAYPNQILALTFTNKAAIEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  +I   +                                        + + T H+
Sbjct: 62  KERLQSLIGEKAK--------------------------------------DVNMFTFHS 83

Query: 139 FCEAIMQ----------QFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  I++          Q P+      +F I D+   K ++       
Sbjct: 84  LCNLILKYEGKNLSKISQIPIN---DGNFNIIDDRDQKNILRTIYDKL 128


>gi|67639455|ref|ZP_00438310.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei GB8 horse
           4]
 gi|238520001|gb|EEP83465.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei GB8 horse
           4]
          Length = 389

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  D
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86

Query: 95  ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 +   A + +         D   A   +   L       + TIHAFC+  +Q+
Sbjct: 87  TGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQE 144


>gi|217033890|ref|ZP_03439314.1| hypothetical protein HP9810_870g22 [Helicobacter pylori 98-10]
 gi|216943653|gb|EEC23098.1| hypothetical protein HP9810_870g22 [Helicobacter pylori 98-10]
          Length = 681

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL------------IEEAKKSTLASIML 182
           T H F    ++Q          F++ D ++ K L            I + K   +   M 
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISSFRASISQIKNGMIDLSMQ 150

Query: 183 DNN-EELKKAFYEILEISNDEDIETLI 208
           D+   +  + +   L+  N  D + L+
Sbjct: 151 DSECHKAYELYQNALKKDNLVDFDDLL 177


>gi|78186859|ref|YP_374902.1| exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273]
 gi|78166761|gb|ABB23859.1| Exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273]
          Length = 1203

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 4/157 (2%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHL 92
            + A+AG+GKTH +    LRL++  +  P ++L +T+T+AA+ E+  R+ + I      L
Sbjct: 17  LIEASAGTGKTHAIGSLYLRLVVEESLLPDSILVVTYTEAASGELRGRIRDRIRDTLHAL 76

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            D   S +     G       + +A   L   L +     V TIHAFC   +Q    E+ 
Sbjct: 77  RDPQCSQQALLEIGSAAVAVGVEEAARRLEGALGSFDTAAVHTIHAFCLRALQDHAFESG 136

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
             S +  A      +L++   +             L 
Sbjct: 137 --SLYDTALGADQHELLQGIVEDFWRQRFFSPESPLS 171


>gi|261344760|ref|ZP_05972404.1| hypothetical protein PROVRUST_06024 [Providencia rustigianii DSM
           4541]
 gi|282567204|gb|EFB72739.1| exodeoxyribonuclease V, beta subunit [Providencia rustigianii DSM
           4541]
          Length = 1201

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 25/192 (13%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANA 60
           N  Q  S+ +D        Q           + A+AG+GKT+ +    LRLLL     NA
Sbjct: 2   NKMQMSSQLLDAYKLPLQGQR---------LIEASAGTGKTYTIGILYLRLLLGLGGENA 52

Query: 61  HP-----STLLCLTHTKAAAAEMSHRVLEI-----ITAWSHLSDEILSAEITKIQGKKPN 110
            P       +L +T T+AA  E+  R+ E      +    +        E   +  + P+
Sbjct: 53  FPRPLSVEEILVVTFTEAATNELRGRIRERIHKMRLACLRNGLGFDSEPEYLTLLDELPH 112

Query: 111 KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           +     A + L+          + TIH FC+ ++     E+ I   F     +    + +
Sbjct: 113 QEQREFAANWLLAAERQMDEAAIYTIHGFCQRMLAHNAFESGI--LFEQTMIQDEFPIQK 170

Query: 171 EAKKSTLASIML 182
           +A          
Sbjct: 171 QACADFWRRHFY 182


>gi|325959294|ref|YP_004290760.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
 gi|325330726|gb|ADZ09788.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
          Length = 786

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 88/237 (37%), Gaps = 31/237 (13%)

Query: 1   MIYHNSFQEH-----SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL 55
           MI  N F++      +  I LI      + +++   +S ++ A  GSGKT ++V ++L+ 
Sbjct: 1   MINLNMFEQLVVKNLNRDIRLIVNPDQNKAISAPTDQSQFIVAGPGSGKTTVMVLKILKF 60

Query: 56  L-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
           + + + +P  +L  T T+ AAAE+  R+L                 + +     P  +D+
Sbjct: 61  IYVDDVNPGNILATTFTRKAAAELRSRILSW------------GDILKQQLLNDPEFADL 108

Query: 115 SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
                 L         +   T+ +  E +++     A  +    + DE  S  L+  A  
Sbjct: 109 HSKLKKL-----DFNQIVTGTLDSISEEVLRNH--RAPGSPPPVVIDEFVSNALMMRA-- 159

Query: 175 STLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
                +  D     +     +++I          +++      +K   ++    W  
Sbjct: 160 ----GLFKDEKHHNEDLRNFLIKIRGGSSFGLNTNEMCRCLLEIKDRVYYDQVFWDE 212


>gi|262341237|ref|YP_003284092.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272574|gb|ACY40482.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 860

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 14/159 (8%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEII 86
           P+     +A+AGSGKT  LV+  L +LL + +P     +L LT TK A+ EM  R+L+ +
Sbjct: 4   PSTLKIYNASAGSGKTFFLVRNYLYVLLNSPYPDEFKRVLALTFTKTASEEMKKRILQCL 63

Query: 87  TAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGL--KVQTIHAFCE 141
             +S+   +     +     K           +++ +L +IL           TI  F  
Sbjct: 64  KEFSNQIVKKEYFSLFDHLAKDLKLTKHQLYERSKKILFSILHDFSSFSKNTSTIDKFTY 123

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
            I++ F       S+  +  E  + + + +  ++ L  +
Sbjct: 124 NIIRSFI------SNREVNLEMDTNRFLFKIVENLLYRL 156


>gi|207092800|ref|ZP_03240587.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 574

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAALASKGHNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|15645527|ref|NP_207703.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori 26695]
 gi|2314046|gb|AAD07956.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori 26695]
          Length = 675

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        + A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|297622271|ref|YP_003703705.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
 gi|297163451|gb|ADI13162.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
          Length = 924

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 19/179 (10%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            A+AG+GKT  LV+R L L+ A      L  +T T   AAE+  RV   +          
Sbjct: 5   VASAGTGKTTSLVRRYLELIGAGTPLRRLAGVTFTGVGAAELRTRVRAGVAEVGAT---- 60

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                    G+  + +   + R           G  + TIH F  A ++       +   
Sbjct: 61  ---------GRFLDLAFPPEHRPRFEEAALELSGATLTTIHGFMAAALRLNAPLLGLDPD 111

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
           F    E +++ L EE   +TL  +       L      +         E L + + + R
Sbjct: 112 FGALGEWEARALFEEEL-ATLRFLARAPEHALHAPLQRLA-----GGAEALCTQLFAAR 164


>gi|229097011|ref|ZP_04227979.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
 gi|228686407|gb|EEL40317.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
          Length = 1028

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 26/139 (18%)

Query: 24  QLLASDPTR--SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
           Q +A       +  ++A AG+GKT++++ R+  LL         ++ +T T A+  EM  
Sbjct: 307 QYIAVHTPHTDNLMITAGAGTGKTYVMIDRIFYLLEKVGITLKDIIMVTFTNASTNEMKE 366

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ + + +   L+                        +   +   E    +++ TIHAF 
Sbjct: 367 RLQKKLLSMFKLTG-----------------------KTKYLYFAEEVKNIQISTIHAFS 403

Query: 141 EAIMQQFPLEANITSHFAI 159
           ++I+ Q   E     +  +
Sbjct: 404 KSILTQLAHEIGFGRNLKV 422


>gi|50119935|ref|YP_049102.1| exonuclease V subunit beta [Pectobacterium atrosepticum SCRI1043]
 gi|49610461|emb|CAG73906.1| exodeoxyribonuclease V beta chain [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1208

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ L    LRLLL                +L +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTYTLAALYLRLLLGLGKQAAYPRPLLVEEILVVTFTEAATEELRERIRAR 80

Query: 86  ITAW-------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           I A        S   D     + T +       +D  +A  +L+          + TIH 
Sbjct: 81  IHALRIACLRKSAQGDAAQEPKDTSLAQLLVEITDHREAADVLLAAERQMDEAAIYTIHG 140

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           FC+ ++     E+ +   F     E  + L  +A       
Sbjct: 141 FCQRMLSTNAFESGV--LFEQVLIEDEQPLRRQACSDFWRR 179


>gi|317011121|gb|ADU84868.1| ATP-dependent DNA helicase [Helicobacter pylori SouthAfrica7]
          Length = 672

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   AS       + A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAASALKGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A++EM  RV +     S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASSEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|208434816|ref|YP_002266482.1| rephelicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori G27]
 gi|208432745|gb|ACI27616.1| rephelicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori G27]
          Length = 675

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYFKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|28896252|ref|NP_802602.1| ATP-dependent exonuclease, subunit A [Streptococcus pyogenes SSI-1]
 gi|28811503|dbj|BAC64435.1| putative ATP-dependent exonuclease, subunit A [Streptococcus
           pyogenes SSI-1]
          Length = 1153

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 72/197 (36%), Gaps = 29/197 (14%)

Query: 48  LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK 107
           +V+R+L  +L       L   T T  AA E+  R+   + +    + +            
Sbjct: 1   MVERILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDF----------- 49

Query: 108 KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSK 166
                   + +  L   L++     + T+ AF + ++ ++     I+S F I  D+ +  
Sbjct: 50  --------QMKVYLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQD 101

Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFF 225
            L +E      +  M   N++   AF  ++   S +    +   +++          F  
Sbjct: 102 VLKQEVFSKLFSEFM---NQKEAPAFRALVKNFSGNCKDTSAFRELV-----YTCYSFSQ 153

Query: 226 SYLWRRKIIEKSLWSIA 242
           S    +  ++++  S A
Sbjct: 154 STENPKIWLQENFLSAA 170


>gi|108563318|ref|YP_627634.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori HPAG1]
 gi|107837091|gb|ABF84960.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori HPAG1]
          Length = 675

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        + A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|296130268|ref|YP_003637518.1| Exodeoxyribonuclease V [Cellulomonas flavigena DSM 20109]
 gi|296022083|gb|ADG75319.1| Exodeoxyribonuclease V [Cellulomonas flavigena DSM 20109]
          Length = 1148

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 9/164 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A+AG+GKT  +     R +    A    LL +T  + A +E+  RV   + A
Sbjct: 12  PAGTTVLEASAGTGKTFTIAALAARYVAEGHALLPELLLVTFGRTATSELRDRVRARLVA 71

Query: 89  WSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                       S ++        + +++++ R  L   L       + T H FC+ +++
Sbjct: 72  TERALRDPAARTSDDVLVRHLADVDDAELARRRDRLTVALSQVDAATITTTHGFCQQMLR 131

Query: 146 QFPLEAN---ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                     +     +        L  E       +     ++
Sbjct: 132 ALGTTTGGGVVEPGATLV--PDVADLEAEVVDDLYLAAYAGADQ 173


>gi|325002209|ref|ZP_08123321.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 815

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 19/176 (10%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  + L   T  +  + + P   A V A AG+GKT  +  RV+ L+      P  +L 
Sbjct: 7   ELATALGLHPPTAEQAAVIAAPAGPALVVAGAGAGKTETMAARVVWLVATGRVLPEQVLG 66

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++  RV   +   +                +  +  D + AR         
Sbjct: 67  LTFTRKAAQQLGTRVRSRLRRLA--------------GSRLLDDLDPTGAR----RAALL 108

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            G   V T HA+   ++ +  L         +     + +L      +  A + +D
Sbjct: 109 AGEPTVSTYHAYAGRLVGEHALRLPAEPANRLLGPTATWQLAHRVVSTWAADLEID 164


>gi|323694559|ref|ZP_08108725.1| UvrD/REP family ATP-dependent DNA helicase [Clostridium symbiosum
           WAL-14673]
 gi|323501327|gb|EGB17223.1| UvrD/REP family ATP-dependent DNA helicase [Clostridium symbiosum
           WAL-14673]
          Length = 1073

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 47/154 (30%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            +++ + E +       S  V A  G+GKT  L  R+L LL      PS +  +T T  A
Sbjct: 472 FLNENQKEAVTVLARAVS--VKAGPGTGKTGTLTARILHLLKERGVKPSEITAVTFTNKA 529

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAE+  R+ +       +                                      L + 
Sbjct: 530 AAELRQRLEKQTGGKKTVRL------------------------------------LNIG 553

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           T H+ C  I++         S F     ++   L
Sbjct: 554 TFHSICLEILK--------DSDFECIPAQEEMLL 579


>gi|228984311|ref|ZP_04144492.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775428|gb|EEM23813.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 1166

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|229154809|ref|ZP_04282924.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 4342]
 gi|228628757|gb|EEK85469.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 4342]
          Length = 1166

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|330990129|ref|ZP_08314109.1| DNA helicase II [Gluconacetobacter sp. SXCC-1]
 gi|329762817|gb|EGG79281.1| DNA helicase II [Gluconacetobacter sp. SXCC-1]
          Length = 668

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 39/172 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +++     Q  A+    +  V A AG+GKT  LV  V+  +   N  PS +L +T T  A
Sbjct: 9   MLAGLTPLQRQAARQEGAVVVLAGAGTGKTRTLVAGVVDRIGRRNIAPSRILAVTFTNRA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ + + A                                            + 
Sbjct: 69  AEEMRSRIADAVGADRAPG--------------------------------------WIG 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           T HA     ++  P  A +   F IAD E S++++    ++ +A   LD  +
Sbjct: 91  TFHAHGRRQLRTDPDIALLRDGFGIADAEDSRRIVRRLLQAAMADGALDAQD 142


>gi|254779988|ref|YP_003058095.1| DNA helicase II (UvrD) [Helicobacter pylori B38]
 gi|254001901|emb|CAX30154.1| DNA helicase II (UvrD) [Helicobacter pylori B38]
          Length = 681

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +   ++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++   + +   +                                      
Sbjct: 68  SKEMQERALKLLKNQALIPPLL-------------------------------------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLD 183
           T H F    ++Q          F++ D ++ K L ++ K           K+ +  + + 
Sbjct: 91  TFHRFGLLFLRQHMNLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSMQ 150

Query: 184 NNE--ELKKAFYEILEISNDEDIETLI 208
           ++E  +  + +   L+  N  D + L+
Sbjct: 151 DSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|228926280|ref|ZP_04089354.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228833377|gb|EEM78940.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 1165

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEIL 196
           +FC  +++ +    ++   F IA++ +++ L EE     L     +++N    +      
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNMIFFELVDRYT 98

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              +D+D++ +I         L L     ++    K ++K
Sbjct: 99  SDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 129


>gi|229137928|ref|ZP_04266527.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST26]
 gi|228645585|gb|EEL01818.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST26]
          Length = 907

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|242310535|ref|ZP_04809690.1| ATP-dependent helicase [Helicobacter pullorum MIT 98-5489]
 gi|239522933|gb|EEQ62799.1| ATP-dependent helicase [Helicobacter pullorum MIT 98-5489]
          Length = 676

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 20/220 (9%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   +Q  AS  P+    V A+AG+GKT  +V R+  LL +   P+ +L LT T  AA
Sbjct: 3   LSKLNIQQREASLAPSGYNLVIASAGTGKTSTIVGRISHLLESGITPNEILLLTFTNKAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+     +      E  +      +  K   S + K    L  + ++    +V  
Sbjct: 63  QEMLARLELRFDSKIVKQIEAGTFHAVAYRYLKSKNSIILKQPRELKVLFKSLYDRRV-- 120

Query: 136 IHAFCEAIMQQFPLEAN-------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
                  + Q  P  AN       +  +  I ++  S      A++     I LD  EE 
Sbjct: 121 ----FLNVSQTPPYGANYLYDLFSLYQNATINEDFSSWLEKRNAEQMQYVEIYLDVWEE- 175

Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
              F  + +  +  D   L+  I      LK   FF   L
Sbjct: 176 ---FRNLKKEYHYADYNDLL--IFYKEEILKDKLFFKEIL 210


>gi|310766602|gb|ADP11552.1| exonuclease V subunit beta [Erwinia sp. Ejp617]
          Length = 1178

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRV---------LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +                         +L +T T+AA AE+  R+   
Sbjct: 21  LIEASAGTGKTFTIGLLYLRLLLGLGGAAAFSRPLSVEEILVVTFTEAATAELRGRIRAN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S  +  +       +D+ +A  +L+          + TIH FC+ ++ 
Sbjct: 81  IHELRIACIRGKSPNLM-LAALIAEIADLPQAASVLLAAERQMDEAGIFTIHGFCQRMLN 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + ++E    L   A       
Sbjct: 140 LNAFESGMLFDQQLLEDE--TPLRRRAAADFWRR 171


>gi|46448281|gb|AAS94936.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 1070

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +     ++   +       V A  G+GKT  LV RV RL+        ++ +T T+ AA 
Sbjct: 484 VDFNPEQRSAIAGGPGPVLVLAGPGTGKTRTLVGRVQRLVAEGVAARRIVAVTFTRRAAT 543

Query: 77  EMSHRVLEIITAWSHLSDEILSAEIT-----KIQGKKPNKSDMSKARHLLITI 124
           EM  R+   +   + L        +      +   + P       AR +    
Sbjct: 544 EMDERLSVTLGDGAPLPRTDTLHALAFEFWHRSSAQPPVLLSEEAARRVFAEA 596


>gi|228919962|ref|ZP_04083316.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839675|gb|EEM84962.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 1166

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|229195442|ref|ZP_04322210.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1293]
 gi|228587982|gb|EEK46032.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1293]
          Length = 1166

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|228964186|ref|ZP_04125309.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795536|gb|EEM43020.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 1166

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|259506511|ref|ZP_05749413.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
 gi|259165931|gb|EEW50485.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
          Length = 677

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           I+L    + +++ A+ P     + A AG+GKT  +  R+  L+      P+ +L +T T
Sbjct: 1  MINLQDLDEDQRIAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFT 60

Query: 72 KAAAAEMSHRV 82
            AA EM HR+
Sbjct: 61 SRAAGEMRHRL 71


>gi|160937050|ref|ZP_02084413.1| hypothetical protein CLOBOL_01939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439951|gb|EDP17699.1| hypothetical protein CLOBOL_01939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1094

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 47/166 (28%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +  + +Q           V A  G+GKT  LV R+  L+      PS +  +T T  AA 
Sbjct: 496 ALNRDQQQAVESVFPVTAVIAGPGTGKTKTLVSRIEHLMGERGVKPSEITAVTFTNKAAD 555

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E++ R+ + +     L                                      ++V T 
Sbjct: 556 ELTQRIRQALPGRRSL------------------------------------NQMQVGTF 579

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           H+ C  ++ +   E       ++AD+ Q+    EE    T+ ++ L
Sbjct: 580 HSLCYRLLARSGTEL------SLADQGQA----EECAGETIEALEL 615


>gi|218289482|ref|ZP_03493710.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240350|gb|EED07532.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 706

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           T+D ++  + E   A+       V A AGSGKT +L+ R+  L+     P  +L  T T+
Sbjct: 120 TLDQLNDAQRE--AATHKNGPCMVVAAAGSGKTAMLIARIQYLINQGVKPGDILACTFTR 177

Query: 73  AAAAEMSHRVLEIITA 88
            AA EM+ R+L  +  
Sbjct: 178 KAAQEMTDRLLAAVGE 193


>gi|228932517|ref|ZP_04095398.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228827207|gb|EEM72960.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 1166

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|317011613|gb|ADU85360.1| DNA helicase II [Helicobacter pylori SouthAfrica7]
          Length = 681

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 53/210 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D +++  ++++ A        + A AGSGKT  L  R+  L+ A        L LT T
Sbjct: 7   ILDHLNE--AQKIAACHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+ EM  R L+++   + +   +                                   
Sbjct: 65  NKASKEMQERALKLLNNQAFIPPLL----------------------------------- 89

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASI 180
              T H F    ++Q          F++ D ++ K L ++ K           K+ +  +
Sbjct: 90  --CTFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISGFRASISQIKNGMMDL 147

Query: 181 MLDNNE--ELKKAFYEILEISNDEDIETLI 208
              ++E  +  + +   L+  N  D + L+
Sbjct: 148 NTQDSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|308185248|ref|YP_003929381.1| putative ATP-dependent DNA helicase [Helicobacter pylori SJM180]
 gi|308061168|gb|ADO03064.1| putative ATP-dependent DNA helicase [Helicobacter pylori SJM180]
          Length = 681

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 51/205 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +  +++++ AS       + A AGSGKT  L  R+  L+ +        L LT T  A+ 
Sbjct: 10  NLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASK 69

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R L+++   + +   +                                      T 
Sbjct: 70  EMQKRALKLLKNQALIPPLL-------------------------------------CTF 92

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLDNN 185
           H F    ++Q          F++ D ++ K L ++ K           K+ +  + + ++
Sbjct: 93  HRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSMQDS 152

Query: 186 E--ELKKAFYEILEISNDEDIETLI 208
           E  +  + +   L+  N  D + L+
Sbjct: 153 ECHKAYELYQNALKKDNLVDFDDLL 177


>gi|254779514|ref|YP_003057620.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori
           B38]
 gi|254001426|emb|CAX29421.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori
           B38]
          Length = 675

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|319956827|ref|YP_004168090.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319419231|gb|ADV46341.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 685

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             ++  A+ P     + A+AG+GKT  +V R+  LL     P  +L LT T  AA EM 
Sbjct: 7  NPEQREAATAPFGHNLIIASAGTGKTSTIVGRIAYLLQKGVPPEKILLLTFTNKAAGEMV 66

Query: 80 HRVLEIITA 88
           R+     A
Sbjct: 67 TRLKHYFPA 75


>gi|38233332|ref|NP_939099.1| putative DNA helicase II [Corynebacterium diphtheriae NCTC 13129]
 gi|38199592|emb|CAE49248.1| Putative DNA helicase II [Corynebacterium diphtheriae]
          Length = 683

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           I+L      ++  A  P     + A AG+GKT  +  R+  L+    A P  +L +T T
Sbjct: 1  MINLDDLDDDQRAAAEAPRGPVAILAGAGTGKTRTITYRIAHLIDRGMASPHRVLAVTFT 60

Query: 72 KAAAAEMSHRV 82
          + AA EM HR+
Sbjct: 61 RRAAGEMRHRL 71


>gi|330885758|gb|EGH19907.1| UvrD/REP helicase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 557

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 42/161 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
                Q+ A +   S ++ A  GSGKT  L  ++ RLL    +    ++ +T+T  AA E
Sbjct: 8   DLNDAQVAAIEHPGSVFLVACPGSGKTRTLTYKIARLLSELKSDKKRVVAITYTHRAADE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++    S                                        L + TIH
Sbjct: 68  IHERIEQLGVDTSQ---------------------------------------LWIGTIH 88

Query: 138 AFCE-AIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKST 176
           +FC   I++ +    + +   F + +   ++++ EE   + 
Sbjct: 89  SFCLEWILKPYGIYHSELKHGFRVINVHDTERMHEELCSAV 129


>gi|25027350|ref|NP_737404.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
          YS-314]
 gi|23492631|dbj|BAC17604.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
          YS-314]
          Length = 694

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           I+L    + +++ A+ P     + A AG+GKT  +  R+  L+      P+ +L +T T
Sbjct: 18 VINLQDLDEDQRIAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFT 77

Query: 72 KAAAAEMSHRV 82
            AA EM HR+
Sbjct: 78 SRAAGEMRHRL 88


>gi|145294942|ref|YP_001137763.1| hypothetical protein cgR_0888 [Corynebacterium glutamicum R]
 gi|140844862|dbj|BAF53861.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 678

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           I+L    + +++ AS P     + A AG+GKT  +  R+  L+      P+ +L +T T
Sbjct: 1  MINLQDLDEDQRIAASAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFT 60

Query: 72 KAAAAEMSHRV 82
            AA EM HR+
Sbjct: 61 SRAAGEMRHRL 71


>gi|308183581|ref|YP_003927708.1| DNA helicase II [Helicobacter pylori PeCan4]
 gi|308065766|gb|ADO07658.1| DNA helicase II [Helicobacter pylori PeCan4]
          Length = 681

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 53/210 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            +D +++  ++++ AS       + A AGSGKT  L  R+  L+ A        L LT T
Sbjct: 7   ILDHLNE--AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFT 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+ EM  R L+++                             K + L+  +L      
Sbjct: 65  NKASKEMQERALKLL-----------------------------KNQTLIPPLL------ 89

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASI 180
              T H F    ++Q          F++ D ++ K L ++ K           K+ +  +
Sbjct: 90  --CTFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISSFRASISQIKNGMIDL 147

Query: 181 MLDNNE--ELKKAFYEILEISNDEDIETLI 208
            + ++E  +  + +   L+  N  D + L+
Sbjct: 148 SMQDSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|167769939|ref|ZP_02441992.1| hypothetical protein ANACOL_01280 [Anaerotruncus colihominis DSM
           17241]
 gi|167667930|gb|EDS12060.1| hypothetical protein ANACOL_01280 [Anaerotruncus colihominis DSM
           17241]
          Length = 788

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 59/202 (29%), Gaps = 82/202 (40%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------------- 59
           ++  + + + A D      + A AGSGKT +++ R+  ++                    
Sbjct: 24  MNPMQRQAVYAVD--GPVLILAGAGSGKTTVIINRIANMIQFGDAYTSAHVPEHLTEDDV 81

Query: 60  -------------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
                                      P  +L +T T  AA E+  R+  ++ + +   +
Sbjct: 82  VFLEEYAAGESWDMDRAFSLIRNRTVMPWNILAITFTNKAAGELRDRLAAMLGSVASDVN 141

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                                   T H+ C  I+++        
Sbjct: 142 A--------------------------------------STFHSACVRILRREIERIGYG 163

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
             FAI D + S +LI+ A K  
Sbjct: 164 RSFAIYDTDDSIRLIKAALKEL 185


>gi|312891088|ref|ZP_07750611.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
 gi|311296396|gb|EFQ73542.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
          Length = 1053

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 47/172 (27%)

Query: 10  HSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           +++  + ++    +QL A +       V A  G+GKT IL  R+ ++L   +A P  +LC
Sbjct: 9   NAKFQEALNNLNPQQLAAVNKMDGPVLVIAGPGTGKTQILAARIGKILTETDALPHEILC 68

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT+T A A  M  R+ + I   +                                     
Sbjct: 69  LTYTDAGAVAMRKRLFDFIGPDA------------------------------------- 91

Query: 128 PGGLKVQTIHAFCEAIMQQ---FPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + + T HAFC  ++Q+   +  + N+        +  +  L  E     
Sbjct: 92  -YRVNIYTFHAFCNEVIQENLDYFGKMNLEP----LSDLDAALLFRELVDDL 138


>gi|228899819|ref|ZP_04064065.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
           4222]
 gi|228859838|gb|EEN04252.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
           4222]
          Length = 1166

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|210135645|ref|YP_002302084.1| DNA helicase II [Helicobacter pylori P12]
 gi|210133613|gb|ACJ08604.1| DNA helicase II [Helicobacter pylori P12]
          Length = 681

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 51/205 (24%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +   ++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A+ 
Sbjct: 10  NLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASK 69

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R L+++   + +   +                                      T 
Sbjct: 70  EMQERALKLLNHQAFIPPLL-------------------------------------CTF 92

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLDNN 185
           H F    ++Q          F++ D ++ K L ++ K           K+ +  +   ++
Sbjct: 93  HRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISSFRASISQIKNGMMDLSAQDS 152

Query: 186 E--ELKKAFYEILEISNDEDIETLI 208
           E  +  + +   L+  N  D + L+
Sbjct: 153 ECYKAYELYQNALKKDNLVDFDDLL 177


>gi|257793016|ref|YP_003186415.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479708|gb|ACV60026.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 706

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           T+D ++  + E   A+       V A AGSGKT +L+ R+  L+     P  +L  T T+
Sbjct: 120 TLDQLNDAQRE--AATHKNGPCMVVAAAGSGKTAMLIARIQHLINQGVRPGDILACTFTR 177

Query: 73  AAAAEMSHRVLEIITAWSHL 92
            AA EM+ R+L  +      
Sbjct: 178 KAAQEMTDRLLAAVGERGKA 197


>gi|120603526|ref|YP_967926.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120563755|gb|ABM29499.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 1127

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +     ++   +       V A  G+GKT  LV RV RL+        ++ +T T+ AA 
Sbjct: 541 VDFNPEQRSAIAGGPGPVLVLAGPGTGKTRTLVGRVQRLVAEGVAARRIVAVTFTRRAAT 600

Query: 77  EMSHRVLEIITAWSHLSDEILSAEIT-----KIQGKKPNKSDMSKARHLLITI 124
           EM  R+   +   + L        +      +   + P       AR +    
Sbjct: 601 EMDERLSVTLGDGAPLPRTDTLHALAFEFWHRSSAQPPVLLSEEAARRVFAEA 653


>gi|19552005|ref|NP_600007.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389668|ref|YP_225070.1| DNA helicase RECQ [Corynebacterium glutamicum ATCC 13032]
 gi|21323545|dbj|BAB98172.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
          ATCC 13032]
 gi|41325003|emb|CAF19484.1| PUTATIVE DNA HELICASE RECQ [Corynebacterium glutamicum ATCC
          13032]
          Length = 678

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           I+L    + +++ AS P     + A AG+GKT  +  R+  L+      P+ +L +T T
Sbjct: 1  MINLQDLDEDQRIAASAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFT 60

Query: 72 KAAAAEMSHRV 82
            AA EM HR+
Sbjct: 61 SRAAGEMRHRL 71


>gi|304569684|ref|YP_009677.2| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232732|gb|ADP85586.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 1127

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +     ++   +       V A  G+GKT  LV RV RL+        ++ +T T+ AA 
Sbjct: 541 VDFNPEQRSAIAGGPGPVLVLAGPGTGKTRTLVGRVQRLVAEGVAARRIVAVTFTRRAAT 600

Query: 77  EMSHRVLEIITAWSHLSDEILSAEIT-----KIQGKKPNKSDMSKARHLLITI 124
           EM  R+   +   + L        +      +   + P       AR +    
Sbjct: 601 EMDERLSVTLGDGAPLPRTDTLHALAFEFWHRSSAQPPVLLSEEAARRVFAEA 653


>gi|228944850|ref|ZP_04107213.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814878|gb|EEM61136.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 1165

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|229189331|ref|ZP_04316351.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 10876]
 gi|228594125|gb|EEK51924.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 10876]
          Length = 1166

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|229132031|ref|ZP_04260894.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST196]
 gi|228651431|gb|EEL07403.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST196]
          Length = 1166

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+    P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDGPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEIL 196
           +FC  +++ +    ++   F IA++ +++ L EE     L     +++N    +      
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNSIFFELVDRYT 98

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              +D+D++ +I         L L     ++    K ++K
Sbjct: 99  SDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 129


>gi|229177656|ref|ZP_04305033.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 172560W]
 gi|228605846|gb|EEK63290.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 172560W]
          Length = 1166

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|228951606|ref|ZP_04113710.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228808067|gb|EEM54582.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 1166

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|229090184|ref|ZP_04221432.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-42]
 gi|228693120|gb|EEL46833.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-42]
          Length = 1166

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|227550046|ref|ZP_03980095.1| superfamily I ATP-dependent helicase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227077892|gb|EEI15855.1| superfamily I ATP-dependent helicase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 682

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 71/180 (39%), Gaps = 24/180 (13%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71
            IDL      +++ A+ P     + A AG+GKT  +  R+  L+  +   P  +L +T T
Sbjct: 2   AIDLSLLDDDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQSVVSPHKVLAVTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA EM  R+  ++      +    SA + +++   P       A  L   +L+     
Sbjct: 62  QRAAGEMRDRLR-VLGIGGVQARTFHSAALRQLRYFWPQI-----AGDLPWRLLDNKFP- 114

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                      ++ +    A + S      ++  + L+ E + +  + I  ++  E   A
Sbjct: 115 -----------LVGRAARAAGLDSG-----KDMVRDLLGEIEWAKASVIGAEDYAEKVAA 158


>gi|172040186|ref|YP_001799900.1| putative ATP-dependent DNA helicase II [Corynebacterium
          urealyticum DSM 7109]
 gi|171851490|emb|CAQ04466.1| putative ATP-dependent DNA helicase II [Corynebacterium
          urealyticum DSM 7109]
          Length = 716

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             +   A+ P     + A AG+GKT  +  R+  L+     +P  +L +T T  AA+EM
Sbjct: 8  DPEQLRAATAPRGPVAIIAGAGTGKTRTITHRIAHLVDGGFVNPDQVLAVTFTSRAASEM 67

Query: 79 SHRV 82
            R+
Sbjct: 68 RERL 71


>gi|261822628|ref|YP_003260734.1| exonuclease V subunit beta [Pectobacterium wasabiae WPP163]
 gi|261606641|gb|ACX89127.1| exodeoxyribonuclease V, beta subunit [Pectobacterium wasabiae
           WPP163]
          Length = 1203

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ L    LRLLL                +L +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTYTLAALYLRLLLGLGKQAAYPRPLLVEEILVVTFTEAATEELRERIRAR 80

Query: 86  ITAW-------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           I A        S   +     + T +       +D  +A  +L+          + TIH 
Sbjct: 81  IHALRIACLRKSAQGENAGKHKDTSLAQLLGEIADHREAADVLLAAERQMDEAAIYTIHG 140

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           FC+ ++     E+ +   F     E  + L  +A       
Sbjct: 141 FCQRMLSTNAFESGV--LFEQMLIEDEQPLRRQACADFWRR 179


>gi|229016490|ref|ZP_04173431.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1273]
 gi|229022699|ref|ZP_04179223.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1272]
 gi|228738511|gb|EEL88983.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1272]
 gi|228744757|gb|EEL94818.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1273]
          Length = 1166

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+    P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDGPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEIL 196
           +FC  +++ +    ++   F IA++ +++ L EE     L     +++N    +      
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNSIFFELVDRYT 98

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              +D+D++ +I         L L     ++    K ++K
Sbjct: 99  SDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 129


>gi|229068796|ref|ZP_04202092.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus F65185]
 gi|229078429|ref|ZP_04210990.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock4-2]
 gi|228704851|gb|EEL57276.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock4-2]
 gi|228714304|gb|EEL66183.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus F65185]
          Length = 1166

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|229126550|ref|ZP_04255564.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-Cer4]
 gi|229143847|ref|ZP_04272266.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST24]
 gi|228639608|gb|EEK96019.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST24]
 gi|228656939|gb|EEL12763.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-Cer4]
          Length = 1166

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|228906866|ref|ZP_04070735.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
           200]
 gi|228852870|gb|EEM97655.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
           200]
          Length = 1166

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|228957511|ref|ZP_04119263.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228802103|gb|EEM48968.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 1166

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|228938359|ref|ZP_04100970.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971238|ref|ZP_04131867.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977847|ref|ZP_04138229.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           Bt407]
 gi|228781865|gb|EEM30061.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           Bt407]
 gi|228788473|gb|EEM36423.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821305|gb|EEM67319.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 1166

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|108563860|ref|YP_628176.1| DNA helicase II [Helicobacter pylori HPAG1]
 gi|107837633|gb|ABF85502.1| DNA helicase II [Helicobacter pylori HPAG1]
          Length = 682

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 51/200 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ AS       + A AGSGKT  L  R+  L+ +        L LT T  A+ EM  R
Sbjct: 16  QKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKEMQER 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
            L+++                             K + L+  +L         T H F  
Sbjct: 76  ALKLL-----------------------------KNQTLIPPLL--------CTFHRFGL 98

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLDNNE--EL 188
             ++Q          F++ D ++ K L ++ K           K+ +  + + ++E  + 
Sbjct: 99  LFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSMQDSECYKA 158

Query: 189 KKAFYEILEISNDEDIETLI 208
            + +   L+  N  D + L+
Sbjct: 159 YELYQNALKKDNLVDFDDLL 178


>gi|229042983|ref|ZP_04190714.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH676]
 gi|228726323|gb|EEL77549.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH676]
          Length = 1165

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|229108699|ref|ZP_04238309.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-15]
 gi|228674729|gb|EEL29963.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-15]
          Length = 1166

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|15612436|ref|NP_224089.1| putative ATP-dependent DNA helicase [Helicobacter pylori J99]
 gi|4155998|gb|AAD06960.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
          Length = 681

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +   ++++ A        + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNGAQKIAACHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++   + +   +                                      
Sbjct: 68  SKEMQERALKLLKNQALIPPLL-------------------------------------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLD 183
           T H F    ++Q          F++ D ++ K L ++ K           K+ +  + + 
Sbjct: 91  TFHRFGLLFLRQHMNLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSVQ 150

Query: 184 NNE--ELKKAFYEILEISNDEDIETLI 208
           ++E  +  + +   L+  N  D + L+
Sbjct: 151 DSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|294785294|ref|ZP_06750582.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_27]
 gi|294487008|gb|EFG34370.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_27]
          Length = 1075

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 90/227 (39%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  + A+AG+GKT+ L    +  L             +L +T T+ A AE+   +L  +
Sbjct: 5   KNLVLKASAGTGKTYRLSLEYIVALCKKGDIEPIDYKNILVMTFTRKATAEIKEGILNKL 64

Query: 87  TAWSHLSDEILSAEITKIQGKKP----------------------------NKSDMSKAR 118
           + +  + +   ++E++ ++                                + + +    
Sbjct: 65  SEFIEIYEITKNSELSVVEAISKSKLIDDKKKNNYLNLIESIKNIESNLVIDNNFLENLS 124

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
            +   I++    LK+ TI AF   I +   +  N+     + + DEE++    ++  ++ 
Sbjct: 125 KVYKEIIKNKEKLKIYTIDAFFNIIFKN--IVINLMKIKSYTMLDEEENFSYYKKVLENI 182

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
                  NNE+L   F      +++++I+    +I  +IS+R    L
Sbjct: 183 F------NNEKLFNDFKNFFTENSEKNIDNYISIIQRLISSRWKYIL 223


>gi|229149444|ref|ZP_04277680.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1550]
 gi|228634086|gb|EEK90679.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1550]
          Length = 1166

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|229120765|ref|ZP_04250008.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 95/8201]
 gi|228662770|gb|EEL18367.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 95/8201]
          Length = 1165

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|109948205|ref|YP_665433.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715426|emb|CAK00434.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 681

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ A        + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNEAQKIAACHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++   + +   +                                      
Sbjct: 68  SKEMQERALKLLKNQAFIPPLL-------------------------------------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-------AKKSTLASIMLDNNEE 187
           T H F    ++Q          F++ D ++ K L ++       A  S + + M+D N +
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISGFRANISQIKNGMIDLNTQ 150

Query: 188 LKK------AFYEILEISNDEDIETLI 208
             +       +   L+  N  D + L+
Sbjct: 151 DTECYKAYDLYQNALKKDNLVDFDDLL 177


>gi|15834632|ref|NP_296391.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
           Nigg]
          Length = 1026

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 9/194 (4%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +   ++ A+AG+GKT  + Q +LR LL         +L +T T AA  E+  R+ E +  
Sbjct: 14  SGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQESLKQ 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKA-RHLLITILETPGGLKVQTIHAFCEAIMQQ- 146
              L  + LS   T +     ++    K         L T   + + TIH  C   ++Q 
Sbjct: 74  ALTLFSQALSHPETPLPPYVSSQETKVKQLYXKXRNSLATLDEMNIFTIHGXCRFTLEQH 133

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIE 205
           FP    I    ++  E Q+   I++     L     +N     + AF      +  +   
Sbjct: 134 FPWVQPIHPS-SMFSEPQT---IQQYILDYLRQNSWENVLSPKQYAFLSYHHRATTQQTR 189

Query: 206 TLISDIISNRTALK 219
            L   ++ +  +  
Sbjct: 190 HLADRLLQDYASTP 203


>gi|229056867|ref|ZP_04196263.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH603]
 gi|228720395|gb|EEL71968.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH603]
          Length = 1166

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+    P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDGPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEIL 196
           +FC  +++ +    ++   F IA++ +++ L EE     L     +++N    +      
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNSIFFELVDRYT 98

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              +D+D++ +I         L L     ++    K ++K
Sbjct: 99  SDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 129


>gi|307638133|gb|ADN80583.1| ATP-dependent DNA helicase [Helicobacter pylori 908]
 gi|325996733|gb|ADZ52138.1| ATP-dependent DNA helicase /epsilon proteobacterial type 2
           [Helicobacter pylori 2018]
 gi|325998327|gb|ADZ50535.1| putative ATP-dependent DNA helicase [Helicobacter pylori 2017]
          Length = 681

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +   ++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++   + +   +                                      
Sbjct: 68  SKEMQERALKLLNNQAFIPPLL-------------------------------------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD----------N 184
           T H F    ++Q          F++ D ++ K L ++ K S   + +             
Sbjct: 91  TFHRFGLLFLRQHMNLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMVDLSMQ 150

Query: 185 NEELKKAFY---EILEISNDEDIETLI 208
           + E  KA+      L+  N  D + L+
Sbjct: 151 DSECYKAYELYQNALKKDNLVDFDDLL 177


>gi|302037409|ref|YP_003797731.1| hypothetical protein NIDE2086 [Candidatus Nitrospira defluvii]
 gi|300605473|emb|CBK41806.1| conserved protein of unknown function, putative ATP-dependent
           nuclease, subunit A [Candidatus Nitrospira defluvii]
          Length = 1128

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73
           I    + +  A+   R+  V A AG+GKT +LV R+L LL+    P   S ++ LT T  
Sbjct: 7   IPDQAAREAAATTFDRNVVVIAGAGTGKTTLLVNRLLYLLMRRTDPLDLSRIVALTFTNK 66

Query: 74  AAAEMSHRVLEI------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           AA EM  R+ E       +    +      +  I  ++ +    +D   AR      L  
Sbjct: 67  AATEMKLRLRERLRSLVNVEGRDNPPGGSGTVSIADLRMRYGWTTDEIVARA--DAALRD 124

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
               ++ T+H+F   +++ +P+EA +T  F   ++
Sbjct: 125 VEKAQIGTLHSFAAHLLRLYPIEAGVTPTFQTDED 159


>gi|229166075|ref|ZP_04293837.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH621]
 gi|228617384|gb|EEK74447.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH621]
          Length = 1166

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+    P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDGPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEIL 196
           +FC  +++ +    ++   F IA++ +++ L EE     L     +++N    +      
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNSIFFELVDRYT 98

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              +D+D++ +I         L L     ++    K ++K
Sbjct: 99  SDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 129


>gi|154332840|ref|XP_001562682.1| ATP-dependent DNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134059685|emb|CAM41806.1| putative ATP-dependent DNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1154

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 45/188 (23%)

Query: 15  DLISQTKSEQ-LLASDPTRSAWVS-ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           D +S+  + Q   A+ P  +A +  A AGSGKT  +  R+  LL +      +L +  T+
Sbjct: 172 DALSRMDASQTRAATHPADAALILQAGAGSGKTQTMAARIAYLLQSGVPGHAILGICFTR 231

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA  +  RV  I+                         S +++  H           LK
Sbjct: 232 QAAETLRERVRSIL------------------------PSTLARQAH----------ALK 257

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++T HAF    +++F +   +     + D  Q  +L      +          E+  +A 
Sbjct: 258 LKTFHAFGLECLRRFCV---LQPDTHVLDARQQHQLARRVVDT------YAQREKSSEAV 308

Query: 193 YEILEISN 200
            ++++  N
Sbjct: 309 ADLVDYVN 316


>gi|229171886|ref|ZP_04299455.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus MM3]
 gi|228611596|gb|EEK68849.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus MM3]
          Length = 1166

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEIL 196
           +FC  +++ +    ++   F IA++ +++ L EE     L     +++N    +      
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNSIFFELVDRYT 98

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              +D+D++ +I         L L     ++    K ++K
Sbjct: 99  SDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 129


>gi|189201746|ref|XP_001937209.1| ATP-dependent DNA helicase pcrA [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984308|gb|EDU49796.1| ATP-dependent DNA helicase pcrA [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 851

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 40/162 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            ++ +++  +++   + P     V A  GSGKT  L  RV   +      P  ++  T T
Sbjct: 4   LLEGLNE--AQKSAVTSPANVVQVLAPPGSGKTKTLTARVAYHINHERLQPWNIIVCTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                          D  +A+ +L          
Sbjct: 62  IKAAREMKERIKGFVG-------------------------DKLEAKLIL---------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
              T H+     + ++  E  I  +F IAD   S  +++   
Sbjct: 87  --GTFHSVARRFLYRYGQEIGIDKNFGIADTSDSTSILKRII 126


>gi|229028911|ref|ZP_04185012.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1271]
 gi|228732482|gb|EEL83363.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1271]
          Length = 1166

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L +     +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEAEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|323697653|ref|ZP_08109565.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323457585|gb|EGB13450.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1049

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 32/186 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLL--LANAHPS-------------TLLCLTHTKAAAAEMSH 80
           V A+AGSGKT+ L +R L LL       P               ++ +T T  AAAEM  
Sbjct: 7   VKASAGSGKTYQLTRRFLALLDRAGEDTPFVCTNRPGRGFSWPEIMAVTFTNKAAAEMKE 66

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV+  + A +   D+  +                  AR  +  IL     L ++TI +  
Sbjct: 67  RVVTGLKAGALGLDKDPACSPET-------------ARATVGAILRRYHRLNIRTIDSLL 113

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE--LKKAFYEILEI 198
             +++ F LE  +   F I  +E  ++L +      L     D +    L  A   ++  
Sbjct: 114 VLLLRLFALEFGVRPDFEIVFDE--RELFDAVFDHFLGQCETDESAAALLDGAVRTLIRQ 171

Query: 199 SNDEDI 204
                 
Sbjct: 172 EGKNGF 177


>gi|229010530|ref|ZP_04167732.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides DSM 2048]
 gi|228750728|gb|EEM00552.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides DSM 2048]
          Length = 1166

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+    P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDGPGSQHIRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEIL 196
           +FC  +++ +    ++   F IA++ +++ L EE     L     +++N    +      
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNSIFFELVDRYT 98

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              +D+D++ +I         L L     ++    K ++K
Sbjct: 99  SDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 129


>gi|269796045|ref|YP_003315500.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098230|gb|ACZ22666.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542]
          Length = 1111

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 25/179 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S  + ++ +     T  +  +   P     V A AGSGKT  +  RV+ L+      P  
Sbjct: 9   SAADIADLLGQHRPTPEQTAVIEAPLAPMLVVAGAGSGKTETMSARVVWLIANGLVEPQE 68

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA E+S                         +  +  +           + 
Sbjct: 69  VLGLTFTRKAAGELSD------------------------RVGRRLRQLRRSRAGSGGSA 104

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
           L+      + T +++  +++    L         +  E  S ++  +  +S    +  D
Sbjct: 105 LDALDRPTISTYNSYAASLVGDHGLRIGREPGARLLSEASSWQVASDLVESWHGDLGTD 163


>gi|152992778|ref|YP_001358499.1| ATP-dependent DNA helicase UvrD [Sulfurovum sp. NBC37-1]
 gi|151424639|dbj|BAF72142.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
           NBC37-1]
          Length = 689

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 28/199 (14%)

Query: 17  ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S   +EQL  A+       + A+AG+GKT  +V R+  LL     PS +L LT T  AA
Sbjct: 3   LSTLNAEQLSAATASLGQNLIIASAGTGKTSTIVGRIAHLLNEGTDPSKILLLTFTNKAA 62

Query: 76  AEMSHRVL-----EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            EM  R+      ++++     +   +S    K           S+ + L  +I E    
Sbjct: 63  GEMIARLERYFPKKVVSRIESGTFHAVSYRWLKELHPNLALKQPSELKTLFRSIYE---- 118

Query: 131 LKVQTIHAFCEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE-- 187
                         ++     N+  + F+     +   L + A         L+   +  
Sbjct: 119 --------------KRNFERMNLPLAPFSATYLYEMYSLYQNASLEGFDEWFLEKYPDHE 164

Query: 188 -LKKAFYEILEISNDEDIE 205
            +  A+ +I++    E I+
Sbjct: 165 VIMDAYMDIVQEFEKEKID 183


>gi|302339977|ref|YP_003805183.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637162|gb|ADK82589.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 1082

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 32/149 (21%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            +Q  A      + + A  G+GKT  L+++V RL+     PS+++ +T    AA E++ R
Sbjct: 495 QQQAAADYCGGPSLIIAGPGTGKTRTLIEKVTRLIHGGVVPSSIVAVTFANKAAGEVADR 554

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +                                  A   + + L    G++V T H+   
Sbjct: 555 LRS--------------------------------AGITVNSSLSEADGVRVFTFHSLGL 582

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIE 170
           AI++           F I D+E+   L++
Sbjct: 583 AIVKPHLALLEREGDFLIIDDEEKMALLK 611


>gi|227832530|ref|YP_002834237.1| putative ATP-dependent DNA helicase II [Corynebacterium
          aurimucosum ATCC 700975]
 gi|227453546|gb|ACP32299.1| putative ATP-dependent DNA helicase II [Corynebacterium
          aurimucosum ATCC 700975]
          Length = 684

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          DL    + ++  A+ P     + A AG+GKT  +  R+  ++     +P  +L +T T  
Sbjct: 5  DLSLLDEDQRAAATAPRGPVCILAGAGTGKTRTITYRIAHMVDQGFVNPQRVLAVTFTSR 64

Query: 74 AAAEMSHRVLEI 85
          AA+EM  R+ ++
Sbjct: 65 AASEMRERLNQM 76


>gi|119900140|ref|YP_935353.1| ATP-dependent exoDNAse subunit beta [Azoarcus sp. BH72]
 gi|119672553|emb|CAL96467.1| ATP-dependent exoDNAse beta subunit [Azoarcus sp. BH72]
          Length = 1241

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 7/185 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM----SHRVLEIITAW 89
            V A+AG+GKT  +    LRLLL       ++L +T TKAA AE+      R+++ +   
Sbjct: 22  LVEASAGTGKTWNICGLYLRLLLERELAVESVLVVTFTKAATAELSSRIRERIVDCLRVL 81

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                         I        +       L   L+T     + TIH FC+  +   P 
Sbjct: 82  DGGDPGADPFVPGLIACAGAAGIEPPLMAERLRRALQTFDEAAIFTIHGFCQRALADTPF 141

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
            A +     +A+++ +  L  E  +      +         A + +    + E    ++ 
Sbjct: 142 AAGLPYALELAEDDGA--LRREVAQDFWRREIAAGALAPLLADHLLACGDSPEGWAEMLR 199

Query: 210 DIISN 214
             ++ 
Sbjct: 200 RDLAR 204


>gi|197336488|ref|YP_002157503.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
 gi|197315191|gb|ACH64639.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
          Length = 762

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 38/127 (29%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ ++           ++A AG+GKT +L +R+ + +  + +P +++ +T TK AA EM 
Sbjct: 11  TERQKEGVLHHGTPTVITAGAGAGKTAVLTKRIAKAIYHSGNPESVVAITFTKDAANEMK 70

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV  ++ A                                            + T H+F
Sbjct: 71  ERVNNLVGAGLG-------------------------------------NRAVISTFHSF 93

Query: 140 C-EAIMQ 145
               I++
Sbjct: 94  AMNRILR 100


>gi|262183602|ref|ZP_06043023.1| putative ATP-dependent DNA helicase II [Corynebacterium
          aurimucosum ATCC 700975]
          Length = 683

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          DL    + ++  A+ P     + A AG+GKT  +  R+  ++     +P  +L +T T  
Sbjct: 4  DLSLLDEDQRAAATAPRGPVCILAGAGTGKTRTITYRIAHMVDQGFVNPQRVLAVTFTSR 63

Query: 74 AAAEMSHRVLEI 85
          AA+EM  R+ ++
Sbjct: 64 AASEMRERLNQM 75


>gi|229160194|ref|ZP_04288193.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus R309803]
 gi|228623155|gb|EEK79982.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus R309803]
          Length = 1166

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|330920735|ref|XP_003299127.1| hypothetical protein PTT_10062 [Pyrenophora teres f. teres 0-1]
 gi|311327314|gb|EFQ92774.1| hypothetical protein PTT_10062 [Pyrenophora teres f. teres 0-1]
          Length = 986

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 40/162 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            ++ +++  +++   + P     V A  GSGKT  L  RV   +      P  ++  T T
Sbjct: 4   LLEGLNE--AQKSAVTSPANVVQVLAPPGSGKTKTLTARVAYHINHERLQPWNIIVCTFT 61

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             AA EM  R+   +                          D  +A+ +L          
Sbjct: 62  IKAAREMKERIKGFVG-------------------------DKLEAKLIL---------- 86

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
              T H+     + ++  E  I  +F IAD   S  +++   
Sbjct: 87  --GTFHSVARRFLYRYGQEIGIDKNFGIADTSDSTAILKRII 126


>gi|21672830|ref|NP_660897.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|4033461|sp|O51889|REP_BUCAP RecName: Full=ATP-dependent DNA helicase rep
 gi|2827035|gb|AAC38127.1| replicase [Buchnera aphidicola]
 gi|21623483|gb|AAM68108.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 658

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 38/149 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++           + A AGSGKT +++ +++ L+      P  ++ +T T  AA E+  R
Sbjct: 7   QKNAIELINGPCLILAGAGSGKTKVIINKIIYLINNCQYKPGNIIAVTFTNKAAHEIKVR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + +                                      L     + + T H+   
Sbjct: 67  LAKHLN-------------------------------------LLQIKKMIISTFHSLGL 89

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIE 170
            I+++        S+F++ DE     L++
Sbjct: 90  EIIKKEINTLKFNSNFSLFDERDQMMLLK 118


>gi|207108775|ref|ZP_03242937.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 297

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +   A        V A+AG+GKT  +V R+L LL     P  +L LT T  A+ EM 
Sbjct: 2   NPEQLKAALASKGHNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMI 61

Query: 80  HRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            RV +     S +       ++    K      +     + R LL +I++T   + 
Sbjct: 62  ARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAID 117


>gi|261838287|gb|ACX98053.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori 51]
          Length = 676

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|45658522|ref|YP_002608.1| exodeoxyribonuclease V subunit beta [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601765|gb|AAS71245.1| exodeoxyribonuclease V beta chain [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 1033

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 36/154 (23%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
            A+AG+GKT+ +++ V+ L+L +  P + +L LT+T+ AA E+  R+ + + +     + 
Sbjct: 2   EASAGTGKTYTIMEIVIDLILEHKIPLTQILILTYTEKAAGELKERLRKKLISSGLTKE- 60

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                AR L          + + TIH FC AI++++P+E    +
Sbjct: 61  ---------------------AREL--------DQVTISTIHGFCNAILKEYPVETETHT 91

Query: 156 HFAIADEEQSK-----KLIEEAKKSTLASIMLDN 184
           ++ + D  +       KL  E   S +    L++
Sbjct: 92  NWILTDALERLNIALYKLQHEEWNSWVDPEKLED 125


>gi|331090972|ref|ZP_08339814.1| hypothetical protein HMPREF9477_00457 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405194|gb|EGG84730.1| hypothetical protein HMPREF9477_00457 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 611

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 49/224 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +   K++    +       V A  GSGKT ++ +R+  L+      P  +L +T TKAA 
Sbjct: 1   MGFNKAQTEAITHQNGPMLVLAGPGSGKTLVITKRIEYLIQKRKVRPEEILVITFTKAAT 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R  +++                                            +   T
Sbjct: 61  NEMRERFRKLMQGQHFP--------------------------------------VTFGT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++       +++   I  EE+  +L++E  + T A I +D+ ++  +     
Sbjct: 83  FHGIYYGILK---WAYGLSAE-NIFSEEEKIRLLKEILEHTDAEIEVDDEKDFLEGITGE 138

Query: 196 LEISNDEDIETLISDIISNR---TALKLIFFFFS-YLWRRKIIE 235
           +    +  +E  I +  S     T  + I++ +     RRK ++
Sbjct: 139 ISCIKNNQLE--IKEFQSVYCPSTVFREIYYTYERERNRRKKLD 180


>gi|330816107|ref|YP_004359812.1| Exodeoxyribonuclease V, beta subunit [Burkholderia gladioli BSR3]
 gi|327368500|gb|AEA59856.1| Exodeoxyribonuclease V, beta subunit [Burkholderia gladioli BSR3]
          Length = 1248

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A+AG+GKT  +    +RLLL +      +L +T TKAA AE+  R+   +   +H  +
Sbjct: 27  IEASAGTGKTWNICALYVRLLLEHDLQADQILVVTFTKAATAELHERIRGRLAQLAHALE 86

Query: 95  E------------ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
                          +      +G      D   A   +   L       + TIHAFC+ 
Sbjct: 87  TGDDGGDPFVARLFETTLGEGSEGDDGGAIDAETAAKRIRRALRGFDQAAIHTIHAFCQR 146

Query: 143 IMQQ 146
            +Q+
Sbjct: 147 ALQE 150


>gi|284005618|ref|YP_003391438.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
 gi|283820802|gb|ADB42639.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
          Length = 966

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 77/231 (33%), Gaps = 43/231 (18%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             ++            + A  GSGKT  LV R++RL+        L   T T+ AA E+ 
Sbjct: 9   NPAQLQAIEATEGPLLIIAGPGSGKTKTLVDRIVRLIQLGTPAENLFVATFTEKAAKELV 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV   +                                 L   +      + + T+H+ 
Sbjct: 69  TRVSNQL---------------------------------LRSGLRVNLNEMYLGTLHSL 95

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA----SIMLDNNE----ELKKA 191
              +++++     +   + I D+   + ++       +      +++        E    
Sbjct: 96  FLRLLEEYREYTRLKRSYRILDDFDQQFVLYRNINRFMEIDDIEVLVGEPTRPRWERASD 155

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242
              +L   ++E ++ ++  + S+      +      ++R  ++E+++   +
Sbjct: 156 LVRLLNRVSEEYLDPIV--LASSTDIPVRVLGEAYSIYREILLEENVLDFS 204


>gi|256830884|ref|YP_003159612.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
 gi|256580060|gb|ACU91196.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
          Length = 1033

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 7/123 (5%)

Query: 9   EHSETIDLISQT--KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           E S   D   QT  + +            V A  G+GKT  L+ RV  LL   A P+ +L
Sbjct: 452 ELSLLADEAVQTANEMQMAAILAGPGPVLVLAGPGTGKTQTLMGRVRHLLAQGADPARIL 511

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI-----TKIQGKKPNKSDMSKARHLL 121
            LT T+ AA E+  R+  +      L        +     T + G+ P       +R L 
Sbjct: 512 ILTFTRKAARELKDRLQRLCPGLPVLPKTDTLHALGLEYWTSVMGEAPILLSEESSRRLF 571

Query: 122 ITI 124
              
Sbjct: 572 AAA 574


>gi|227115358|ref|ZP_03829014.1| exonuclease V subunit beta [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 1193

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 18/161 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ L    LRLLL                +L +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTYTLAALYLRLLLGLGKQAAYPRPLLVEEILVVTFTEAATEELRERIRAR 80

Query: 86  ITAW-------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           I A        S   +E    +   +       SD   A  +L+          + TIH 
Sbjct: 81  IHALRIACLRKSAQGEEAEKPKDASLAQLLAEISDHRDAADVLLAAERQMDEAAIYTIHG 140

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           FC+ ++     E+ +   F     E  + L  +A       
Sbjct: 141 FCQRMLSTNAFESGV--LFEQVLIEDEQPLRRQACADFWRR 179


>gi|242310501|ref|ZP_04809656.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239522899|gb|EEQ62765.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 702

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 38/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++   +    +  + A AGSGKT  +  R+  L+      PS  L LT T  AA EM
Sbjct: 10  NPPQKEAVTTTEGALLILAGAGSGKTKTITTRLAYLIDEVGIPPSNTLTLTFTNKAAQEM 69

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R L +I   +     +                                      T H 
Sbjct: 70  QKRALNMIENTTSHPPLL-------------------------------------CTFHK 92

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           F    ++ +       ++F +AD + +KK+I+E     
Sbjct: 93  FGLLFLKFYIHYLGRKTNFILADSDDTKKIIKELNAEL 130


>gi|189500494|ref|YP_001959964.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
 gi|189495935|gb|ACE04483.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
          Length = 1054

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 31/141 (21%)

Query: 35  WVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           ++SA AGSGKT  L + +  +LL   A P  ++  T TK AAAE+  RV  ++       
Sbjct: 8   FISAGAGSGKTTRLTEILAEQLLDREAEPDGIIATTFTKKAAAELKERVRSML------- 60

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                               + K R  L   +      ++ T+++ C  ++++F  E  +
Sbjct: 61  --------------------LEKNRQDLAVSI---AEAQIGTVNSVCGGLLKRFAFELGL 97

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           T    + DE  + + +  A  
Sbjct: 98  TMEQKVIDEHAAMERLSRALD 118


>gi|253687310|ref|YP_003016500.1| exodeoxyribonuclease V, beta subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753888|gb|ACT11964.1| exodeoxyribonuclease V, beta subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 1194

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 18/161 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ L    LRLLL                +L +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTYTLAALYLRLLLGLGKQAAYPRPLLVEEILVVTFTEAATEELRERIRAR 80

Query: 86  ITAW-------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           I A        S   +E    +   +       SD   A  +L+          + TIH 
Sbjct: 81  IHALRIACLRKSAQGEESEKPKDASLTQLLAEISDHRDAADVLLAAERQMDEAAIYTIHG 140

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           FC+ ++     E+ +   F     E  + L  +A       
Sbjct: 141 FCQRMLSTNAFESGV--LFEQVLIEDEQPLRRQACADFWRR 179


>gi|229183444|ref|ZP_04310669.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BGSC 6E1]
 gi|228600028|gb|EEK57623.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BGSC 6E1]
          Length = 1166

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 32/160 (20%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R+ E +                K+   +P    + K   LL           + TIH
Sbjct: 1   MKNRIGEAL---------------EKVLIDEPGYQHVRKQLSLL-------NKASISTIH 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  +++ +    ++   F IA++ +++ L EE     L       +  +   F+E+++
Sbjct: 39  SFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFELVD 95

Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             ++D   + L       R  L L     ++    K ++K
Sbjct: 96  RYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 129


>gi|296272340|ref|YP_003654971.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096514|gb|ADG92464.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 680

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 17  ISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +S    EQL A+   P  +  + A+AG+GKT  +V R+  L+     PS ++ LT T  A
Sbjct: 3   LSNLNEEQLAAATCKPGFN-LIIASAGTGKTSTIVGRIATLINGGVKPSEIILLTFTNKA 61

Query: 75  AAEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           A EM  RV      E   A    +   +S ++ K           ++ + L  +I E
Sbjct: 62  AQEMVQRVSKFFGKETAGAIMAGTFHSVSYKLIKQLQVNITLKQPNELKTLFKSIYE 118


>gi|188528249|ref|YP_001910936.1| DNA helicase II [Helicobacter pylori Shi470]
 gi|188144489|gb|ACD48906.1| DNA helicase II [Helicobacter pylori Shi470]
          Length = 681

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 74/207 (35%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  +++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A
Sbjct: 8   LDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++   + +   +                                      
Sbjct: 68  SKEMQERALKLLENQTLIPPLL-------------------------------------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLD 183
           T H F    ++Q          F++ D ++ K L ++ K           K+ +  + + 
Sbjct: 91  TFHRFGLLFLRQHMNLLKRACDFSVLDGDEVKTLCKQLKISSFRASISQIKNGMVDLSMQ 150

Query: 184 NNE--ELKKAFYEILEISNDEDIETLI 208
           ++E  +  + +   L+  N  D + L+
Sbjct: 151 DSECHKAYELYQNALKKDNLVDFDDLL 177


>gi|268590557|ref|ZP_06124778.1| exodeoxyribonuclease V, beta subunit [Providencia rettgeri DSM
           1131]
 gi|291313944|gb|EFE54397.1| exodeoxyribonuclease V, beta subunit [Providencia rettgeri DSM
           1131]
          Length = 1202

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 72/221 (32%), Gaps = 30/221 (13%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV---------LRL 55
           N  Q  S+ +++ S     Q           + A+AG+GKT+ +             +  
Sbjct: 2   NKVQVESQLLNVFSLPLRGQR---------LIEASAGTGKTYTIGILYLRLLLGLGGVNA 52

Query: 56  LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE-----ILSAEITKIQGKKPN 110
                    +L +T T+AA  E+  R+ + I     +            E  ++  +   
Sbjct: 53  FPRPLSVEEILVVTFTEAATNELRGRIRQRIHDMRLVCLRNGVGFESQPEYLELLAELSG 112

Query: 111 KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           +S    A   L           + TIH FC+ ++     E+ +   F     +    + +
Sbjct: 113 ESQRKFAAQWLQAAERQMDEAAIYTIHGFCQRMLVHNAFESGV--LFEQTMIQDEFPIQK 170

Query: 171 EAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           +A            N  + K    +         E L+S+I
Sbjct: 171 QACADFWRRHFYPLNYSMTKVIQSLW-----TSPEALLSEI 206


>gi|15646087|ref|NP_208269.1| DNA helicase II (uvrD) [Helicobacter pylori 26695]
 gi|2314653|gb|AAD08516.1| DNA helicase II (uvrD) [Helicobacter pylori 26695]
          Length = 682

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 51/201 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           ++++ AS       + A AGSGKT  L  R+  L+ +        L LT T  A+ EM  
Sbjct: 15  AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKEMQE 74

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R L+++   + +   +                                      T H F 
Sbjct: 75  RALKLLKNQALIPPLL-------------------------------------CTFHRFG 97

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLDNNE--E 187
              ++Q          F++ D ++ K L ++ K           K+ +  + + ++E  +
Sbjct: 98  LLFLRQHMNLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSMQDSECYK 157

Query: 188 LKKAFYEILEISNDEDIETLI 208
             + +   L+  N  D + L+
Sbjct: 158 AYELYQNALKKDNLVDFDDLL 178


>gi|317178737|dbj|BAJ56525.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori F30]
          Length = 676

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|228949915|ref|ZP_04112110.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228809766|gb|EEM56192.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 1028

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 26/139 (18%)

Query: 24  QLLASDPTR--SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
           Q +A       +  ++A AG+GKT++++ R+  LL         ++ +T T A+  EM  
Sbjct: 307 QYIAVHTPHTDNLMITAGAGTGKTYVMIDRIFYLLEKVGITLKDIIMVTFTNASTNEMKE 366

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ + + +   L+                        +   +   E    +++ TIHAF 
Sbjct: 367 RLQKKLLSMFKLTG-----------------------KTKYLYFAEEVKNIQISTIHAFS 403

Query: 141 EAIMQQFPLEANITSHFAI 159
           ++++ Q   E     +  +
Sbjct: 404 KSVLTQLAHEIGFGRNLKV 422


>gi|150401936|ref|YP_001329230.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|150032966|gb|ABR65079.1| UvrD/REP helicase [Methanococcus maripaludis C7]
          Length = 945

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 47/204 (23%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               +  +A +      V A  G+GKTH + +R L  +L +A    +L LT TK AA  M
Sbjct: 3   FNPKQDEVAENINGIYVVDAGPGTGKTHTITKRYLN-ILNSADIGDILLLTFTKNAAENM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             ++   + +                                            + T H+
Sbjct: 62  KKKIFNKVISHDSSI---------------------------------NLLDANISTFHS 88

Query: 139 FCEAIMQQF----PLEANI----TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           FC  I+++     P    I    + +++I    +S  L     KS        N E+  +
Sbjct: 89  FCNKILRENPESAPYYLGINEPLSKNYSIL---ESSILENYFFKSVYYDFKEKNLEKYPE 145

Query: 191 AFYEILEISNDEDIETLISDIISN 214
            F  +    N  +I  LI  ++S 
Sbjct: 146 IFKTV--SKNYFEILFLIKKLLSK 167


>gi|317182211|dbj|BAJ59995.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori F57]
          Length = 676

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|317177700|dbj|BAJ55489.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori F16]
          Length = 676

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|308184696|ref|YP_003928829.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori SJM180]
 gi|308060616|gb|ADO02512.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori SJM180]
          Length = 675

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        + A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + R LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|217032458|ref|ZP_03437951.1| hypothetical protein HPB128_175g19 [Helicobacter pylori B128]
 gi|298736137|ref|YP_003728662.1| Rep helicase [Helicobacter pylori B8]
 gi|216945866|gb|EEC24486.1| hypothetical protein HPB128_175g19 [Helicobacter pylori B128]
 gi|298355326|emb|CBI66198.1| Rep helicase, single-stranded DNA-dependent ATPase (Rep)
           [Helicobacter pylori B8]
          Length = 675

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|258651813|ref|YP_003200969.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555038|gb|ACV77980.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 685

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLT 69
             +D +   +   +LA  P+    V A AG+GKT  +  R+  L+   AHP S +L +T
Sbjct: 1  MNYLDGLDDGQRAAVLA--PSGPVCVLAGAGTGKTRTITHRIAHLVATGAHPASEVLAVT 58

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AA EM  R+  +
Sbjct: 59 FTTRAAGEMRLRLRAL 74


>gi|237744615|ref|ZP_04575096.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 7_1]
 gi|229431844|gb|EEO42056.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 7_1]
          Length = 1074

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  + A+AG+GKT+ L    +  L             +L +T T+ A AE+   +L  +
Sbjct: 5   KNLVLKASAGTGKTYRLSLEYIAALSKKGDIEPIDYKNILVMTFTRKATAEIKEGILNKL 64

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-------------------- 126
           + +  + +   ++E++ I+    +K   +K R+  + ++E                    
Sbjct: 65  SEFMEIYEISKNSELSVIEAISNSKLIDNKKRNNYLNLIESIKNIEQNLLIDNNFLENLS 124

Query: 127 --------TPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
                       LK+ TI AF   I +   +  N+     + + DEE +    ++  ++ 
Sbjct: 125 KVNKEIIKNKEKLKIYTIDAFFNIIFKN--IVTNLMKIKSYTMLDEEDNFSYYKKVLENI 182

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
                  NN+ L   F      ++++ I+    +I  +IS+R    L
Sbjct: 183 F------NNDRLFNDFKNFFTENSEKTIDNYILIIQRLISSRWKYIL 223


>gi|300783159|ref|YP_003763450.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
 gi|299792673|gb|ADJ43048.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
          Length = 694

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 5/133 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S +  +  +D +     ++  AS P     V A AG+GKT  +  R+  L+ +       
Sbjct: 6   STKSINRLLDGLD--PEQRAAASAPRGPVCVLAGAGTGKTRTITHRIAHLVRSGHVSAGQ 63

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLI 122
           +L +T T  AA EM  R+  +    +           ++     +           + L 
Sbjct: 64  VLAVTFTTRAAGEMRTRLRGLGVEAAQALTFHAAARRQLRYFWPRVVGDRPWDLLENKLR 123

Query: 123 TILETPGGLKVQT 135
            + +     K+ T
Sbjct: 124 YVGQAANRAKLGT 136


>gi|255102289|ref|ZP_05331266.1| UvrD/REP helicase [Clostridium difficile QCD-63q42]
          Length = 1159

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 72/189 (38%), Gaps = 37/189 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQR--------VLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
            ++  V+A+AG+GKT+ +V R        ++      +    +  +T T  +  EM  R+
Sbjct: 430 RQNIVVTASAGTGKTYTMVDRVSFVAHMEIIYRNSKESISDLISMITFTNNSTDEMKERL 489

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
           ++    +  L+                          + + +LE  G +K++TI +F + 
Sbjct: 490 MKHFMQYFELTHN-----------------------KVYMDLLEQLGRMKIKTIDSFTKY 526

Query: 143 IMQQFPLEANITSHFAI------ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           I+ +F     +++ F++       +    K + +E  K  +      N  E+      + 
Sbjct: 527 ILSKFAHLLGLSNSFSLKSGKFELENILRKYINDEITKEIIDDFHNINIYEIANHILALR 586

Query: 197 EISNDEDIE 205
               +  I+
Sbjct: 587 SFLINRKIQ 595


>gi|119715745|ref|YP_922710.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536406|gb|ABL81023.1| UvrD/REP helicase [Nocardioides sp. JS614]
          Length = 1073

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 25/187 (13%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           + +  +    S P   A V A AGSGKT ++  RV+ L++     P  +L LT T  AA+
Sbjct: 20  APSDQQWAAISAPLAPAVVIAGAGSGKTTLMAARVVYLVVTGQVRPDEVLGLTFTTKAAS 79

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ + + A   L +   +    +    +P                       V T 
Sbjct: 80  ELRQRIRQALKAAGALEEPEEAPGDGQSDVLEP----------------------TVATY 117

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI--MLDNNEELKKAFYE 194
           +A+   ++    L         +  +    +L   A       +  + D+ E + +    
Sbjct: 118 NAYAAGLLTDHGLRIGHEPDTRVITDAARYQLGARAVDRYTGDVRYLSDHPETVIQNLLA 177

Query: 195 ILEISND 201
           +    ++
Sbjct: 178 LDSAMSE 184


>gi|329296294|ref|ZP_08253630.1| exonuclease V subunit beta [Plautia stali symbiont]
          Length = 1179

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP---------STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL    P           +L +T T+AA AE+  R+ E 
Sbjct: 20  LIEASAGTGKTFTIGLLYLRLLLGLGGPNAYARPLSVEEILVVTFTEAATAELRGRIREN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I          +SA    +Q    + +  ++A  LL+          + TIH FC+ ++ 
Sbjct: 80  IHELRLACLRGVSANPMLMQ-LLADIAQPAEAAALLLAAERQMDEAAIFTIHGFCQRMLN 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + ++EQ   L+ +A       
Sbjct: 139 LNAFESGMLFEQQLIEDEQQ--LLRQATADFWRR 170


>gi|317009567|gb|ADU80147.1| Rep helicase [Helicobacter pylori India7]
          Length = 676

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 19  QTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 6   QLNPEQLKATKALKGHNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASHE 65

Query: 78  MSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           M  RV +     S +       ++    K      +     + R LL +I++T   L 
Sbjct: 66  MISRVAKYFKFSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNALT 123


>gi|260577888|ref|ZP_05845819.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
 gi|258603982|gb|EEW17228.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
          Length = 696

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           S  +D +     +   AS P     + A AG+GKT  +  R+  L+     +P  +L +
Sbjct: 1  MSSLLDGLD--PEQARAASAPRGPVSIIAGAGTGKTRTITHRIAHLVDGGFVNPDHVLAV 58

Query: 69 THTKAAAAEMSHRV 82
          T T  AAAE+  R+
Sbjct: 59 TFTARAAAELRERL 72


>gi|167761055|ref|ZP_02433182.1| hypothetical protein CLOSCI_03453 [Clostridium scindens ATCC 35704]
 gi|167661289|gb|EDS05419.1| hypothetical protein CLOSCI_03453 [Clostridium scindens ATCC 35704]
          Length = 1064

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 47/166 (28%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++       R+  V A  G+GKT  L+  +L L+      P  +  +T T  AA++M
Sbjct: 478 NREQERAVRSTARTVAVIAGPGTGKTKTLISHILYLIENRKVKPGEITAVTFTNQAASQM 537

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +     +                                      +++ T HA
Sbjct: 538 RERLRNALGKKKQI------------------------------------HTMQIGTFHA 561

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
            C A ++    E      F+I DEE +    +E  +  +    L +
Sbjct: 562 ICLAFLKDQGRE------FSILDEEGA----QEIARGLIEEYRLKD 597


>gi|317013248|gb|ADU83856.1| DNA helicase II (uvrD) [Helicobacter pylori Lithuania75]
          Length = 682

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 38/163 (23%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +   ++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A+ 
Sbjct: 11  NLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASK 70

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R L+++                             K + L+  +L         T 
Sbjct: 71  EMQERALKLL-----------------------------KNQTLIPPLL--------CTF 93

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           H F    ++Q          F++ D ++ K L ++ K S+  +
Sbjct: 94  HRFGLLFLRQHMNLLKRACDFSVLDSDEVKTLCKQLKISSFRA 136


>gi|297562750|ref|YP_003681724.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296847198|gb|ADH69218.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 1150

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E +  +     T  +  +   P     V A AGSGK+  +  RV+ L+      P  +L 
Sbjct: 35  ELARLLGQPEPTAEQSEVICAPLEPGVVIAGAGSGKSETMASRVVWLVANGHVRPEQILG 94

Query: 68  LTHTKAAAAEMSHRVLEIITAW---SHLSDEILSAEIT-----KIQGKKPNKSDMSKARH 119
           LT T+ A AE++ RV + +        L +E+L  E T        G+      + +A  
Sbjct: 95  LTFTRKATAELAERVRKRLEQLRATEQLPEELLDGEPTVSTYNAYAGRIVADHALREAVE 154

Query: 120 LLITILETPGGLKV 133
               +L      ++
Sbjct: 155 PTSRLLSEGQAWQI 168


>gi|160878380|ref|YP_001557348.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
 gi|160427046|gb|ABX40609.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
          Length = 666

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 45/187 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            ++++           V A  GSGKT ++++R   L+      P+ +L +T TKAAA EM
Sbjct: 5   NEAQERAIKHHKGPMLVLAGPGSGKTLVIIRRTQYLIEQHGISPNNILVITFTKAAAMEM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R   ++                                           G+   T HA
Sbjct: 65  QERFDRLMGQGRF--------------------------------------GVNFGTFHA 86

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I++ F    +++    I  EE+  +L+ +  +S    + +++ +E  +     + +
Sbjct: 87  IFFKILR-FAYNYSVS---NIITEEERYRLLRDIIQSM--ELEIEDEKEFLEGIGSEISL 140

Query: 199 SNDEDIE 205
              E+++
Sbjct: 141 VKGENMD 147


>gi|229125267|ref|ZP_04254369.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
 gi|228658193|gb|EEL13931.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
          Length = 714

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 38/142 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            +++ + E +   D  R     A AGSGKT +L  RV  L+ +A+   S +L LT T+ A
Sbjct: 76  YLNEKQIEAVRTID--RPVLAIAAAGSGKTRVLASRVGYLMCVAHVDASRILVLTFTRKA 133

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  +      + + I++                                    
Sbjct: 134 ANEMKERIAGLPGISKSVLNTIVA-----------------------------------G 158

Query: 135 TIHAFCEAIMQQFPLEANITSH 156
           T H+    I++    +  I S+
Sbjct: 159 TFHSVFLRILRSRGYDQRILSN 180


>gi|68536696|ref|YP_251401.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
          K411]
 gi|68264295|emb|CAI37783.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
          K411]
          Length = 696

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           S  +D +     +   AS P     + A AG+GKT  +  R+  L+     +P  +L +
Sbjct: 1  MSSLLDGLD--PEQARAASAPRGPVSIIAGAGTGKTRTITHRIAHLVDGGFVNPDHVLAV 58

Query: 69 THTKAAAAEMSHRV 82
          T T  AAAE+  R+
Sbjct: 59 TFTARAAAELRERL 72


>gi|326776761|ref|ZP_08236026.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
 gi|326657094|gb|EGE41940.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 1208

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 41/167 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++D       ++ +   P     V A  G+GKT  LV+ V   +   A P+ +L LT ++
Sbjct: 31  SVDPPLLDAGQRAVVDHPGGPLLVLAGPGTGKTTTLVESVAARVNRGADPARVLVLTFSR 90

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R+   + A                                         G +
Sbjct: 91  KAAVELRDRMAARLGAAR---------------------------------------GPQ 111

Query: 133 VQTIHAFCEAIMQQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLA 178
             T H+FC A+++    +A++ +    +    +    + E     L 
Sbjct: 112 ATTFHSFCYALVRAH-QDADLFADPLRLLSGPEQDVTVRELLAGQLD 157


>gi|167772731|ref|ZP_02444784.1| hypothetical protein ANACOL_04113 [Anaerotruncus colihominis DSM
           17241]
 gi|167665209|gb|EDS09339.1| hypothetical protein ANACOL_04113 [Anaerotruncus colihominis DSM
           17241]
          Length = 899

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 44/158 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + +    S   R   V A  G+GKT  LV R+ RL+    A P  +  +T T  AAAE+
Sbjct: 463 NERQWEAVSAQGRQITVVAGPGTGKTRTLVYRIRRLIETGAAAPGQITAVTFTNKAAAEL 522

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + R+ + +                                        T   + V T H 
Sbjct: 523 AGRLEQELGR-------------------------------------RTARKVSVGTFHG 545

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            C  +++             + DE  +  L+EE     
Sbjct: 546 LCMKLLRD---RLG---DVTLIDETAALALVEELCAEL 577


>gi|260494475|ref|ZP_05814605.1| exodeoxyribonuclease V beta subunit [Fusobacterium sp. 3_1_33]
 gi|260197637|gb|EEW95154.1| exodeoxyribonuclease V beta subunit [Fusobacterium sp. 3_1_33]
          Length = 1066

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  + A+AG+GKT+ L    +  L             +L +T T+ A AE+   +L  +
Sbjct: 5   KNLVLKASAGTGKTYRLSLEYIAALCKKGDIEPIDYKNILVMTFTRKATAEIKEGILNKL 64

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-------------------- 126
           + +  + +   ++E++ I+    +K   +K ++  + ++E                    
Sbjct: 65  SEFMEIYEISKNSELSVIEAISNSKLIDNKKKNNYLNLIESIKNIEPNLLIDNNFLENLS 124

Query: 127 --------TPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
                       LK+ TI AF   I +   +  N+     + + DEE++    ++  ++ 
Sbjct: 125 KVNKEIIKNKEKLKIYTIDAFFNIIFKN--IVTNLMKIKSYTMLDEEENFSYYKKVLENI 182

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
            +      NE+L   F      +++++I+    +I  +IS+R    L
Sbjct: 183 FS------NEKLFNDFKNFFTENSEKNIDNYISIIQRLISSRWKYIL 223


>gi|218133114|ref|ZP_03461918.1| hypothetical protein BACPEC_00976 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991987|gb|EEC57991.1| hypothetical protein BACPEC_00976 [Bacteroides pectinophilus ATCC
           43243]
          Length = 621

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 35/186 (18%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +++++++    +       V A  GSGKT ++  R L L+      PS +L +T T+ AA
Sbjct: 1   MNKSEAQIRAINHFNGPCQVIAGPGSGKTTVITHRTLSLIRDHGVSPSNILVITFTRMAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R L +             A                             G +   T
Sbjct: 61  GEMKERFLRLAAKEDTAGRMTGEA-----------------------------GRVTFGT 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            HA    I++      N ++   + +E+Q + + +   +  + +   D NE + +   EI
Sbjct: 92  FHAVFFTILKHAY---NYSAQNIVREEQQREAIRQSIARYQIET--EDENEFISQLLAEI 146

Query: 196 LEISND 201
             + ++
Sbjct: 147 SRVKSE 152


>gi|238792776|ref|ZP_04636407.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia intermedia ATCC 29909]
 gi|238727884|gb|EEQ19407.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia intermedia ATCC 29909]
          Length = 1202

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+ + 
Sbjct: 18  LIEASAGTGKTFTIGVLYLRLLLGLGARAAFSRPLMVDEILVVTFTEAATEELRGRIRDN 77

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I          +S ++   +       D+++A   L+          + TIH FC+ ++ 
Sbjct: 78  IHGLRIACVRGVSDDLMH-KALLAEIGDLNEAAAQLLAAERQMDEAAIYTIHGFCQRMLS 136

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I     +  +EQ   L  +A       
Sbjct: 137 NNAFESGILFEQTLLQDEQ--PLRRQACADFWRR 168


>gi|159468518|ref|XP_001692421.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278134|gb|EDP03899.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 815

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 40/156 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
           TK  Q +  D  R+  + A AG+GKT  L++R+L L+      P  +LC+T T  AAAE+
Sbjct: 133 TKGWQAVTGDLERAQLIIAGAGTGKTTTLIKRILYLIQEKRVPPRHILCITFTNKAAAEV 192

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+       + L                                          T H+
Sbjct: 193 RDRLDRAGVDLAGLIAA---------------------------------------TFHS 213

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           +   +++ +   A       +  +    + +  A +
Sbjct: 214 WAYGLLRTYHRAAGFAQCPTVWKDADLLRAVALAIR 249


>gi|154175325|ref|YP_001408248.1| acyl carrier protein [Campylobacter curvus 525.92]
 gi|112802789|gb|EAU00133.1| acyl carrier protein [Campylobacter curvus 525.92]
          Length = 677

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 23/145 (15%)

Query: 17  ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQ   A+ P     + A+AG+GKT  +V R+  LL        +L LT T  AA
Sbjct: 3   LSRLNKEQYTAATAPAGHNLIIASAGTGKTSTIVARIAHLLNLGIDAKRILLLTFTNKAA 62

Query: 76  AEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           AEM  R+      +I    +  +   +S  + K  GK       S+ + LL +++E    
Sbjct: 63  AEMIERLNRYFDKKITAKITAGTFHSVSYSLLKELGKGVVLKQPSELKILLKSLVER--- 119

Query: 131 LKVQTIHAFCEAIMQQFPLEANITS 155
                         ++F   +++  
Sbjct: 120 --------------RKFHHLSDVKP 130


>gi|317180239|dbj|BAJ58025.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori F32]
          Length = 676

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|296532031|ref|ZP_06894810.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC
          49957]
 gi|296267646|gb|EFH13492.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC
          49957]
          Length = 634

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +D ++  +   +LA  P     V A AGSGKT  L +RV  L+L     P  LLC+T T 
Sbjct: 6  LDGLNPAQRAAVLAEAP---VLVLAGAGSGKTETLTRRVADLILRRGEAPDRLLCITFTT 62

Query: 73 AAAAEMSHRVLEIIT 87
           AAAEM  R+   + 
Sbjct: 63 KAAAEMRTRLAARLG 77


>gi|289191863|ref|YP_003457804.1| UvrD/REP helicase [Methanocaldococcus sp. FS406-22]
 gi|288938313|gb|ADC69068.1| UvrD/REP helicase [Methanocaldococcus sp. FS406-22]
          Length = 734

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 36/180 (20%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LAN 59
           +  N F E    +         Q+ +        WV A  GSGKT  LV R L+L+ + N
Sbjct: 1   MDLNEFMEIIHPMLPSGGLDENQMNVVIHGQGPLWVIAGPGSGKTETLVIRTLKLIFVDN 60

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            +P +++  T T+ AA  +  R+            E+                     R+
Sbjct: 61  VNPKSIVITTFTEKAAKNIKDRISNYAYLIYQKYPEL--------------------QRN 100

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKST 176
           L          + + T+H+ C  IM ++     E     ++ + D+ +    + E   + 
Sbjct: 101 L------DVNDIYIGTLHSLCNQIMLEYRYPGYE-----NYRLMDDIEQYLFVHEHSDAV 149


>gi|212711218|ref|ZP_03319346.1| hypothetical protein PROVALCAL_02290 [Providencia alcalifaciens DSM
           30120]
 gi|212686386|gb|EEB45914.1| hypothetical protein PROVALCAL_02290 [Providencia alcalifaciens DSM
           30120]
          Length = 1203

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 25/192 (13%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANA 60
           N  Q +S+ +D      + Q           + A+AG+GKT+ +    LRLLL     NA
Sbjct: 2   NKMQMNSQLLDAYKLPLNGQR---------LIEASAGTGKTYTIGILYLRLLLGLGNENA 52

Query: 61  HP-----STLLCLTHTKAAAAEMSHRVLEI-----ITAWSHLSDEILSAEITKIQGKKPN 110
            P       +L +T T+AA  E+  R+ E      +    +        E  ++  + P+
Sbjct: 53  FPRPLSVEEILVVTFTEAATNELRGRIRERIHKMRLACLRNGLGFESEPEYLRLLAELPS 112

Query: 111 KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           K     A + L+          + TIH FC+ ++     E+ I   F     +    + +
Sbjct: 113 KEQRDFAANWLLAAERQMDEAAIYTIHGFCQRMLAHNAFESGI--LFEQTMIQDEFPIQK 170

Query: 171 EAKKSTLASIML 182
           +A          
Sbjct: 171 QACADFWRRHFY 182


>gi|283798327|ref|ZP_06347480.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
 gi|291073910|gb|EFE11274.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
          Length = 618

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 77/219 (35%), Gaps = 48/219 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +   K+++   +       V A  GSGKT ++  RV  L+     +PS++L +T T+AAA
Sbjct: 1   MPFNKAQEAAVNHGEGPMMVLAGPGSGKTTVVTHRVQSLIERHGVNPSSILVITFTRAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R   ++                                          G +   T
Sbjct: 61  REMKERFERLMEGRCLR------------------------------------GQVSFGT 84

Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFY 193
            HA    I++  +  EA       I  E+Q  + + E   K  L     D NE +     
Sbjct: 85  FHAVFFRILKLAYGYEA-----ADIIREDQRLRFMRELVAKEQLEP--EDENELIASLLS 137

Query: 194 EILEISNDE-DIETLISDIISNRTALKLIFFFFSYLWRR 231
           EI  +  +  D++   +   S   A K I+  +    RR
Sbjct: 138 EISSVKGELIDLDHYYAKSCSE-EAFKRIYAGYEERLRR 175


>gi|117928982|ref|YP_873533.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
 gi|117649445|gb|ABK53547.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
          Length = 1164

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 27/164 (16%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            + L   T  +  +       + V A AGSGKT  +  RV+ L+      P  +L LT T
Sbjct: 25  LLGLPPPTDEQAAVIESAAPLSVVLAGAGSGKTETMAGRVVYLVANGIVRPEQVLGLTFT 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA E++ R+   +T  +                           R ++   +   G  
Sbjct: 85  RRAATELAGRIRRRLTQLAR--------------------------RRVIDPEVLAVGEP 118

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            V T  A+   I+    L   +     +  +  S +    A  +
Sbjct: 119 TVVTYDAYAGRIVADHALRLGVEPGLRLIGQAASWQFARRAVDA 162


>gi|160933915|ref|ZP_02081302.1| hypothetical protein CLOLEP_02777 [Clostridium leptum DSM 753]
 gi|156866588|gb|EDO59960.1| hypothetical protein CLOLEP_02777 [Clostridium leptum DSM 753]
          Length = 1078

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 45/162 (27%)

Query: 17  ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           I Q  SEQLLA         V A  G+GKT  LV R++  +   +  P  L  +T T  A
Sbjct: 462 IEQLNSEQLLAVTSQEPIIEVIAGPGTGKTKTLVSRIIYSVEQLHEPPGELTAVTFTNKA 521

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+   + A +                                        + + 
Sbjct: 522 AGELRQRLKYALPAKA-------------------------------------ANAVHIG 544

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           T H+ C  ++        +     +A E ++  +  +  +  
Sbjct: 545 TFHSLCLKLL------TGLRGKVTLAGEAEALDIASQVLRPL 580


>gi|319442807|ref|ZP_07991963.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
          DSM 44702]
          Length = 710

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          ++L +    +   A+ P     + A AG+GKT  +  R+  L+     +P  +L +T T 
Sbjct: 11 LNLDALDPEQLRAATAPRGPVAIIAGAGTGKTRTITHRIAHLVAGGFVNPDHVLAVTFTT 70

Query: 73 AAAAEMSHRV 82
           AAAE+  R+
Sbjct: 71 RAAAELRERL 80


>gi|225018678|ref|ZP_03707870.1| hypothetical protein CLOSTMETH_02628 [Clostridium methylpentosum
           DSM 5476]
 gi|224948586|gb|EEG29795.1| hypothetical protein CLOSTMETH_02628 [Clostridium methylpentosum
           DSM 5476]
          Length = 784

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 56/199 (28%), Gaps = 80/199 (40%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-------------------- 59
            + ++           + A AGSGKT ++V R+  L+                       
Sbjct: 23  NEMQRKAVFTVNGPLLILAGAGSGKTTVIVNRIAYLVNYGNAYFSDQLPDGLCAEDIVFL 82

Query: 60  ----------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
                                   P  +L +T T  AA E+  R+  ++   +       
Sbjct: 83  ENMASGKFEDEGMFRRLVADHAPRPWNVLAITFTNKAAGELKERLEAMLGDAAL------ 136

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                                            +   T H+ C  I+++       +S F
Sbjct: 137 --------------------------------DINAGTFHSQCMRILRRNIDRLGYSSSF 164

Query: 158 AIADEEQSKKLIEEAKKST 176
            + D + S ++I+++  + 
Sbjct: 165 TVYDTDDSVRVIKDSLSAL 183


>gi|326328709|ref|ZP_08195048.1| exodeoxyribonuclease V, beta subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325953519|gb|EGD45520.1| exodeoxyribonuclease V, beta subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 579

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 17/168 (10%)

Query: 30  PTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           PT +  + A+AG+GKT     LV R +  +   A    +L +T  +AA+ E+  RV   +
Sbjct: 11  PTGTTLIEASAGTGKTFTIGALVTRYV--VEGEATLDEILAITFGRAASQELRDRVRSHL 68

Query: 87  TAWSHLS--------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                             L A +  +     ++  +   R  +   L +  G  + T H 
Sbjct: 69  VEAERAFAAAVAGRRPSPLDAHLELLLDVPDDEVRVRHER--VRDALASFDGATIATTHQ 126

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           FC+ +++   +  +  +   + +     +L+ E           +  E
Sbjct: 127 FCQLVLRSLGVAGDTDAGAELVESLD--ELVVEVVDDLYLKWFGEARE 172


>gi|237740557|ref|ZP_04571038.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 2_1_31]
 gi|229422574|gb|EEO37621.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 2_1_31]
          Length = 1046

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  VSA+AG+GKT+ L    +  L   A+        +L +T T+ A AE+   +L+ +
Sbjct: 8   KNLVVSASAGTGKTYRLSLEYIAALSKKANTEAIDYKNILVMTFTRKATAEIKEGILKKL 67

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-------------------- 126
           + +  L D    ++++  +    N++   K +   I ++E                    
Sbjct: 68  SEFIELYDICKYSKLSVRETILNNENLDEKKKTNYINLIESIEKIEKDLIVDREFLDNLS 127

Query: 127 --------TPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
                       LK+ TI AF   I +   +  N+     +++ DE ++    ++  +S 
Sbjct: 128 NVYKDIIRNKEKLKIYTIDAFLNIIFKN--IVINLMKIKSYSLIDEAENSAYYKKVLESI 185

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLIS---DIISNRTALKL 220
                   N++L   F      +++++I+  IS   ++IS+R    L
Sbjct: 186 FT------NKKLFNDFKNFFTENSEKNIDNYISVVNELISSRWKYIL 226


>gi|308062228|gb|ADO04116.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori Cuz20]
          Length = 676

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|254303004|ref|ZP_04970362.1| exodeoxyribonuclease V beta subunit [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323196|gb|EDK88446.1| exodeoxyribonuclease V beta subunit [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 1066

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  + A+AG+GKT+ L    +  L             +L +T T+ A AE+   +L  +
Sbjct: 5   KNLVLKASAGTGKTYRLSLEYIVALCKKGEIEPIDYKNILVMTFTRKATAEIKEGILNKL 64

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-------------------- 126
           + +  + +   + E++ I+    NK   +K R+  + ++E                    
Sbjct: 65  SEFMEIYEISKNFELSVIEAISDNKLIDNKKRNNYLNLIESIKNIEPNLVIDNNFLENLS 124

Query: 127 --------TPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
                       LK+ TI AF   I +   +  N+     + + DEE +    ++  ++ 
Sbjct: 125 KVNKEIIKNKEKLKIYTIDAFFNIIFKN--IVTNLMKIKSYTMLDEEDNFSYYKKVLENI 182

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
                  NN+ L   F      +++++I+    +I  +IS+R    L
Sbjct: 183 F------NNDRLFNDFKNFFTENSEKNIDNYISIIQRLISSRWKYIL 223


>gi|150400668|ref|YP_001324434.1| UvrD/REP helicase [Methanococcus aeolicus Nankai-3]
 gi|150013371|gb|ABR55822.1| UvrD/REP helicase [Methanococcus aeolicus Nankai-3]
          Length = 751

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 26/130 (20%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
             + ++   +      WV A  GSGKT +LV R L+L+ +   +P +++  T TK A+  
Sbjct: 5   FNEEQKNSVNHKDNPLWVVAGPGSGKTEVLVVRTLKLIFVDGVNPKSIILTTFTKKASQN 64

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+++  T    L  E+  + I                             L+V T+H
Sbjct: 65  LFDRIIKYSTKLYDLYPELKGSSIE-------------------------IHSLRVGTLH 99

Query: 138 AFCEAIMQQF 147
           + C  IM+++
Sbjct: 100 SLCNDIMKEY 109


>gi|296138860|ref|YP_003646103.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026994|gb|ADG77764.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
          Length = 1111

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           E     + T+ ++ +   P     V A AG+GKT  +  RV+ L+      P  +L LT 
Sbjct: 23  ELGQAFAPTQEQRAVIEAPLGPCLVVAGAGAGKTETMAGRVVWLIANRYVTPDQVLGLTF 82

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+ AA ++  RV + ++                  G  P    +  +  L   +L     
Sbjct: 83  TRKAAQQLMIRVRKRLSRL----------------GAAPALERIDPSGEL--RVLLRTVE 124

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            ++ T HA+   +   + +   +     +  E +  ++  +       ++  D N  
Sbjct: 125 PEISTYHAYAGRLHGDYGMLLPVEPTVRLVSETERWQIAFDVVTGWDEALETDKNPA 181


>gi|21673895|ref|NP_661960.1| exodeoxyribonuclease V, beta subunit [Chlorobium tepidum TLS]
 gi|21647033|gb|AAM72302.1| exodeoxyribonuclease V, beta subunit [Chlorobium tepidum TLS]
          Length = 1199

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 8/201 (3%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE 84
            A + +    + A+AG+GKT+ +    LRLL+     P  +L +T T+AA  E+  R+  
Sbjct: 9   AAVELSGMNLIEASAGTGKTYAIASLYLRLLVEQELRPEQILVVTFTEAATQELRARIRR 68

Query: 85  IITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            I     +   +      + K++          +A  LL   L       + TIH FC  
Sbjct: 69  RIREALDVMRGEPTEDEFLVKLRDHTDVTGSTEQAATLLEAALAEFDMASIFTIHGFCLR 128

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
            +Q    E+       + D      L  +            +   L    Y +L+    +
Sbjct: 129 ALQDHAFESGALYDTELMD--DQSALAGQVIDDFWRERFFGDANRLLA--YALLKKWTPD 184

Query: 203 DIETLISDI-ISNRTALKLIF 222
            +   +  + +S R  +  ++
Sbjct: 185 SLMAFLQSLQLSERDVVLPVY 205


>gi|188527736|ref|YP_001910423.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori Shi470]
 gi|188143976|gb|ACD48393.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori Shi470]
          Length = 676

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|308183064|ref|YP_003927191.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori PeCan4]
 gi|308065249|gb|ADO07141.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori PeCan4]
          Length = 676

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|308063741|gb|ADO05628.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori Sat464]
          Length = 676

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|308173148|ref|YP_003919853.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307606012|emb|CBI42383.1| putative ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM
           7]
 gi|328911212|gb|AEB62808.1| putative ATP-dependent DNA helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 761

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 36/133 (27%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
               I   + +    ++      V A AGSGKT +L  R   ++      P  +L +T T
Sbjct: 131 LFPGIGLNREQMRAVTETDGPLLVLAGAGSGKTRVLTARAAHMIEHLGISPENMLLVTFT 190

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AEM  R+       +                                        L
Sbjct: 191 TKAVAEMKERMANEYGLAAG-----------------------------------RVSRL 215

Query: 132 KVQTIHAFCEAIM 144
              T H+F   I+
Sbjct: 216 VTGTFHSFFYKIL 228


>gi|315586856|gb|ADU41237.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori 35A]
          Length = 676

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            L 
Sbjct: 121 ALT 123


>gi|328554009|gb|AEB24501.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens TA208]
          Length = 761

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 36/133 (27%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
               I   + +    ++      V A AGSGKT +L  R   ++      P  +L +T T
Sbjct: 131 LFPGIGLNREQMRAVTETDGPLLVLAGAGSGKTRVLTARAAHMIEHLGISPENMLLVTFT 190

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AEM  R+       +                                        L
Sbjct: 191 TKAVAEMKERMANEYGLAAG-----------------------------------RVSRL 215

Query: 132 KVQTIHAFCEAIM 144
              T H+F   I+
Sbjct: 216 VTGTFHSFFYKIL 228


>gi|317493212|ref|ZP_07951635.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918872|gb|EFV40208.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1191

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 12/172 (6%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV----QRVLRLLLANAHP-----STLLC 67
           ++Q ++   LA        + A+AG+GKT  +     + +L L   NA P       +L 
Sbjct: 1   MTQAQTLDALALPLIGERLIEASAGTGKTFTIAALYLRLLLGLGGENAFPRPLSVEEILV 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T+AA  E+  R+   I     L+    S+    +        D   A   L+     
Sbjct: 61  VTFTEAATEELRGRIRSNIHEL-RLACVRGSSTNPLLSDLLNLIDDKEDAVSQLLAAERQ 119

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                + TIH FC+ ++     E+ I     +  +E    L  +A       
Sbjct: 120 MDEAAIYTIHGFCQRMLSNNAFESGILFQQTLVQDE--LPLRRQACADFWRR 169


>gi|313905522|ref|ZP_07838885.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
 gi|313469585|gb|EFR64924.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
          Length = 605

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 41/147 (27%)

Query: 19  QTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAA 75
           +    Q  A +    +  + A AGSGKT ++ +R+  +L+      P  ++  T T+ AA
Sbjct: 2   ELNENQKAAIECIDHNLRIVACAGSGKTEVITRRIANILINKKDVLPEDIVAFTFTRKAA 61

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +  R+   +    H  D                                    + V T
Sbjct: 62  ENLKQRIQRNVAETGHNID---------------------------------VSKMYVGT 88

Query: 136 IHAFCEAIMQQF-PLEANITSHFAIAD 161
           IH+FC  I++Q+ P        F I D
Sbjct: 89  IHSFCWMILEQYVPFF----RDFRILD 111


>gi|158522929|ref|YP_001530799.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
 gi|158511755|gb|ABW68722.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
          Length = 621

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 46/162 (28%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +S    EQ  AS+       V A  GSGKT  +++R+  L+      P  +L LT T+ A
Sbjct: 1   MSDLNPEQQKASEFTDGVCVVIAVPGSGKTRTMMERIGILVNKHGIPPENILGLTFTRNA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM HR++ ++   S                                        + + 
Sbjct: 61  ADEMRHRLVPVLGEMS--------------------------------------SRVFLT 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           TIH+FC  +++   +       F I    +    I+E  K  
Sbjct: 83  TIHSFCYTLLRSEGIV------FEILSGREQMIFIKEVIKKL 118


>gi|229051608|ref|ZP_04195078.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
 gi|228721719|gb|EEL73193.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
          Length = 714

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 38/132 (28%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            +++ + E +   D  R     A AGSGKT +L  RV  L+ +A+   S +L LT T+ A
Sbjct: 76  YLNEKQIEAVRTID--RPVLAIAAAGSGKTRVLASRVGYLMCVAHVDASRILVLTFTRKA 133

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  +      + + I++                                    
Sbjct: 134 ANEMKERIAGLPGISKSVLNTIVA-----------------------------------G 158

Query: 135 TIHAFCEAIMQQ 146
           T H+    I++ 
Sbjct: 159 TFHSVFLRILRS 170


>gi|196047871|ref|ZP_03115049.1| UvrD/REP helicase [Bacillus cereus 03BB108]
 gi|196021127|gb|EDX59856.1| UvrD/REP helicase [Bacillus cereus 03BB108]
          Length = 273

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 38/131 (29%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++Q + E + + +        A AGSGKT +L  RV  ++     HP  ++ LT TK AA
Sbjct: 61  LNQKQIEAVRSVE--GPVITIAGAGSGKTSVLTSRVAYMMTEKQIHPGNIMLLTFTKKAA 118

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+  +         ++L+                                    T
Sbjct: 119 EEMKERISSLPGLSETAVRQLLA-----------------------------------GT 143

Query: 136 IHAFCEAIMQQ 146
            H+    +++ 
Sbjct: 144 FHSIFLRVLRN 154


>gi|292487197|ref|YP_003530069.1| DNA helicase [Erwinia amylovora CFBP1430]
 gi|292900427|ref|YP_003539796.1| exodeoxyribonuclease V subunit beta [Erwinia amylovora ATCC 49946]
 gi|291200275|emb|CBJ47403.1| exodeoxyribonuclease V beta chain [Erwinia amylovora ATCC 49946]
 gi|291552616|emb|CBA19661.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Erwinia amylovora CFBP1430]
          Length = 1178

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA AE+  R+   
Sbjct: 21  LIEASAGTGKTFTIGLLYLRLLLGLGGEAAFSRPLSVEEILVVTFTEAATAELRGRIRAN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S  +  +       +D+ +A  +L+          + TIH FC+ ++ 
Sbjct: 81  IHELRIACIRGESPNLM-LAALMAEIADLPQAASVLLAAERQMDEAGIFTIHGFCQRMLN 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + ++E    L   A       
Sbjct: 140 LNAFESGMLFEQELLEDE--TPLRRRAAADFWRR 171


>gi|317472659|ref|ZP_07931974.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316899836|gb|EFV21835.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 618

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
          +    +++    +       V A  GSGKT ++ +R   L+     +PS +L +T TKAA
Sbjct: 1  MTEWNEAQTKAITHKDGPMMVLAGPGSGKTTVITERTKYLIEHCGVNPSNILVITFTKAA 60

Query: 75 AAEMSHRVLEIITA 88
          AAEM  R L++   
Sbjct: 61 AAEMKERFLKLAGR 74


>gi|291618660|ref|YP_003521402.1| RecB [Pantoea ananatis LMG 20103]
 gi|291153690|gb|ADD78274.1| RecB [Pantoea ananatis LMG 20103]
          Length = 1179

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA AE+  R+ + 
Sbjct: 21  LIEASAGTGKTFTIGLLYLRLLLGLGGENAWRRPLSVEEILVVTFTEAATAELRGRIRDN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S      Q  +   +D+ +A   L+          + TIH FC+ ++ 
Sbjct: 81  IHQLRLACVRGKSHNPMHQQLME-QIADLPQAASQLLAAERQMDEAAIFTIHGFCQRMLN 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + + EQ+  L+ +A       
Sbjct: 140 LNAFESGMLFEQELIENEQT--LLRQATADFWRR 171


>gi|237742073|ref|ZP_04572554.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 4_1_13]
 gi|229429721|gb|EEO39933.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 4_1_13]
          Length = 1075

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           +S  + A+AG+GKT+ L    +  L             +L +T T+ A AE+   +L  +
Sbjct: 5   KSLVLKASAGTGKTYRLSLEYIIALCKKGDIEAIDYKNILVMTFTRKATAEIKEGILNKL 64

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-------------------- 126
           + +  + +   ++E++ ++    +K    K ++  + ++E                    
Sbjct: 65  SEFIEIYEITKNSELSVVEAISKSKLIDDKKKNNYLNLIESIKNIEPNLVIDNNFLENLS 124

Query: 127 --------TPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
                       LK+ TI AF   I +   +  N+     + + DEE +    ++  ++ 
Sbjct: 125 KVNKEIIKNKEKLKIYTIDAFFNIIFKN--IVTNLMKIKSYTMLDEEDNSIYYKKVLENI 182

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
                  NNE+L   F      +++++I+    +I  +IS+R    L
Sbjct: 183 F------NNEKLFNDFKNFFTENSEKNIDNYISIIQRLISSRWKYIL 223


>gi|182436135|ref|YP_001823854.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464651|dbj|BAG19171.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1184

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 41/167 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++D       ++ +   P     V A  G+GKT  LV+ V   +   A P+ +L LT ++
Sbjct: 31  SVDPPLLDAGQRAVVDHPGGPLLVLAGPGTGKTTTLVESVAARVNRGADPARVLVLTFSR 90

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R+   + A                                         G +
Sbjct: 91  KAAVELRDRMAARLGAAR---------------------------------------GPQ 111

Query: 133 VQTIHAFCEAIMQQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLA 178
             T H+FC A+++    +A++ +    +    +    + E     L 
Sbjct: 112 ATTFHSFCYALVRAH-QDADLFADPLRLLSGPEQDVTVRELLAGQLD 157


>gi|294814879|ref|ZP_06773522.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327478|gb|EFG09121.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1264

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 41/158 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +         V A  G+GKT  LV+ V   + A A P+ +L LT ++ AA E+  R
Sbjct: 42  AQRAVVDHRGGPLLVLAGPGTGKTTTLVEAVAERVAAGADPARVLVLTFSRKAAVELRDR 101

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +                                           G +  T H+FC 
Sbjct: 102 MALRLGGAR---------------------------------------GPQATTFHSFCY 122

Query: 142 AIMQQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLA 178
           A+++    +A++ +    +    +   ++ E     L 
Sbjct: 123 ALVRAH-QDADLFAEPLRLLSGPEQDVMVRELLTGQLD 159


>gi|319646518|ref|ZP_08000747.1| YjcD protein [Bacillus sp. BT1B_CT2]
 gi|317391106|gb|EFV71904.1| YjcD protein [Bacillus sp. BT1B_CT2]
          Length = 591

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 47/141 (33%), Gaps = 37/141 (26%)

Query: 6   SFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63
           + +   E +        +QL A + P     V A AGSGKT +L  R   ++   +  PS
Sbjct: 123 AAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGSGKTRVLTARAAYMISRLDIPPS 182

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  A  EM  R+                                     L   
Sbjct: 183 AILLVTFTTKAVKEMKERMAS-----------------------------------LYGL 207

Query: 124 ILETPGGLKVQTIHAFCEAIM 144
            ++T   L   T H+F   I+
Sbjct: 208 PMQTVNRLVTGTFHSFFYKIL 228


>gi|255018529|ref|ZP_05290655.1| hypothetical protein LmonF_13951 [Listeria monocytogenes FSL
           F2-515]
          Length = 218

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           + +  G+ P+ + + +   LL           + T+H+FC  I++++  EA+I   F + 
Sbjct: 9   LEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEADIDPSFRLI 61

Query: 161 DEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALK 219
           +  +S  + +E  +  L     ++NNE             +D ++ +LIS         K
Sbjct: 62  EPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVESFTGDRSDAELHSLIS---------K 112

Query: 220 LIFFFFSYLWRRKIIEKSL 238
           L  F  +       +E  +
Sbjct: 113 LYDFSRANPDPNAWLEAMV 131


>gi|52785047|ref|YP_090876.1| YjcD [Bacillus licheniformis ATCC 14580]
 gi|163119356|ref|YP_078477.2| putative ATP-dependent DNA helicase YjcD [Bacillus licheniformis
           ATCC 14580]
 gi|52347549|gb|AAU40183.1| YjcD [Bacillus licheniformis ATCC 14580]
 gi|145902862|gb|AAU22839.2| putative ATP-dependent DNA helicase YjcD [Bacillus licheniformis
           ATCC 14580]
          Length = 760

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 47/141 (33%), Gaps = 37/141 (26%)

Query: 6   SFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63
           + +   E +        +QL A + P     V A AGSGKT +L  R   ++   +  PS
Sbjct: 123 AAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGSGKTRVLTARAAYMISRLDIPPS 182

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  A  EM  R+                                     L   
Sbjct: 183 AILLVTFTTKAVKEMKERMAS-----------------------------------LYGL 207

Query: 124 ILETPGGLKVQTIHAFCEAIM 144
            ++T   L   T H+F   I+
Sbjct: 208 PMQTVNRLVTGTFHSFFYKIL 228


>gi|295116233|emb|CBL37080.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
           SM4/1]
          Length = 618

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 77/219 (35%), Gaps = 48/219 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +   K+++   +       V A  GSGKT ++  RV  L+     +PS++L +T T+AAA
Sbjct: 1   MPFNKAQEAAVNHGEGPMMVLAGPGSGKTTVVTHRVQSLIERHGVNPSSILVITFTRAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R   ++                                          G +   T
Sbjct: 61  REMKERFERLMEGRCLR------------------------------------GQVSFGT 84

Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFY 193
            HA    I++  +  EA       I  E+Q  + + E   K  L     D NE +     
Sbjct: 85  FHAVFFRILKLAYGYEA-----ADIIREDQRLRFMRELVAKEQLEP--EDENELIASLLS 137

Query: 194 EILEISNDE-DIETLISDIISNRTALKLIFFFFSYLWRR 231
           EI  +  +  D++   +   S   A K I+  +    RR
Sbjct: 138 EISSVKGELIDLDHYYAKSCSG-EAFKRIYAGYEERLRR 175


>gi|261839700|gb|ACX99465.1| ATP-dependent DNA helicase [Helicobacter pylori 52]
          Length = 671

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 19  QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           Q   EQL A+   +    V A+AG+GKT  +V R+L LL     P  +L LT T  A+ E
Sbjct: 2   QLNHEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 61

Query: 78  MSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           M  RV +   + S +       ++    K      +     + + LL +I++T   +
Sbjct: 62  MIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKNAI 118


>gi|187779932|ref|ZP_02996405.1| hypothetical protein CLOSPO_03528 [Clostridium sporogenes ATCC
           15579]
 gi|187773557|gb|EDU37359.1| hypothetical protein CLOSPO_03528 [Clostridium sporogenes ATCC
           15579]
          Length = 670

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  + A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKDNTLIVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I ++    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISDSRRSP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ ++    N      I   +++  LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRYYKNIN------IISSKEAYSLINNILISYLDSVNED 127


>gi|153810489|ref|ZP_01963157.1| hypothetical protein RUMOBE_00870 [Ruminococcus obeum ATCC 29174]
 gi|149833668|gb|EDM88749.1| hypothetical protein RUMOBE_00870 [Ruminococcus obeum ATCC 29174]
          Length = 610

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 49/174 (28%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           +I +  S+Q   +  +    V A  GSGKT ++V+R   ++      PS +L +T ++AA
Sbjct: 1   MIKRNPSQQRAIAHLSGPMMVLAGPGSGKTSVIVERTAYMINEGGISPSNILVVTFSRAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R L                                          +    +   
Sbjct: 61  AKEMKERFLSFTG--------------------------------------QQYTPVTFG 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFA---IADEEQSKKLIEEAKKSTLASIMLDNN 185
           T H     I++Q          F    I  +E+   ++ E   +    +  + +
Sbjct: 83  TFHGVFYGILKQAY-------GFTAANILSDEEKFGILRELTLNYGGDLAEEGD 129


>gi|317010148|gb|ADU80728.1| DNA helicase II (uvrD) [Helicobacter pylori India7]
          Length = 682

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 38/163 (23%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +   ++++ AS       + A AGSGKT  L  R+  L+ A        L LT T  A+ 
Sbjct: 11  NLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASK 70

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R L+++   + +   +                                      T 
Sbjct: 71  EMQERALKLLKNQALIPPLL-------------------------------------CTF 93

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           H F    ++Q          F++ D ++ K L ++ K S+  +
Sbjct: 94  HRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISSFRA 136


>gi|94987148|ref|YP_595081.1| hypothetical protein LI0706 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731397|emb|CAJ54760.1| uncharacterized conserved protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 1102

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +        +   V A  G+GKT  L+ R+  LL +   PS +L +T ++ AA E+  R+
Sbjct: 524 QNEAIKADIQPILVLAGPGAGKTRTLIGRIEHLLFSGIKPSEILAVTFSRRAAEELQERI 583

Query: 83  LEIITAWSHLSDEILSAEI----TKIQGKKPNKSDMSKARHLLITILE 126
              I   +   D + +  +     K  G +P+      ++ + I   E
Sbjct: 584 RNSIGKGTIRVDTLHALALGYWPKKEDGSQPHVLSEEASQAVFIKANE 631


>gi|193212683|ref|YP_001998636.1| exodeoxyribonuclease V subunit beta [Chlorobaculum parvum NCIB
           8327]
 gi|193086160|gb|ACF11436.1| exodeoxyribonuclease V, beta subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 1199

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 8/201 (3%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE 84
            A   +    + A+AG+GKT+ +    LRLL+     P  +L +T T+AA  E+  R+  
Sbjct: 9   AAVSLSGMNLIEASAGTGKTYAIASLYLRLLVEKELRPEQILVVTFTEAATQELRARIRR 68

Query: 85  IITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            I     +   +      +  ++ +            LL   L       + TIH FC  
Sbjct: 69  RIREALDVMRGEPTEDDFLANLRDRADVTGSTDHVAVLLEAALAEFDMASIFTIHGFCLR 128

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
            +Q    E+       + D      L  +            +   L      +L+    +
Sbjct: 129 ALQDHAFESGALYDTELMD--DQSALAGQVIDDFWRERFFGSANRLLSC--ALLKKWTPD 184

Query: 203 DIETLISDI-ISNRTALKLIF 222
            +   +  + +S R  +  ++
Sbjct: 185 KLMAFLQSLQLSERDVVLPVY 205


>gi|313117253|ref|YP_004044236.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Halogeometricum borinquense DSM
           11551]
 gi|312294144|gb|ADQ68575.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Halogeometricum borinquense DSM
           11551]
          Length = 947

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 49/196 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +      +Q L         V A AG+GKT  + +R   ++      P+ +L +T T  A
Sbjct: 1   MTQPNDHQQDLIDSTDGIHVVDAGAGTGKTFTVTRRYAEIVDQDEVAPADVLLVTFTNNA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R++                                                 +Q
Sbjct: 61  ATEMKDRIVSHCGYGMRE-----------------------------------LSDAPIQ 85

Query: 135 TIHAFCEAIMQQFPLEA--------NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-- 184
           T H+ C  ++ +   EA         IT    I ++E  +K      +  +     D+  
Sbjct: 86  TFHSLCHDLLMEHGFEAPTHLGIDDRITGSTRILEDETVEKAQ---FREFIRRFSDDHAA 142

Query: 185 NEELKKAFYEILEISN 200
            ++  +A  + +E+  
Sbjct: 143 YDDFFRAIEDPVELLG 158


>gi|83719885|ref|YP_441989.1| superfamily I DNA/RNA helicase [Burkholderia thailandensis E264]
 gi|83653710|gb|ABC37773.1| Superfamily I DNA and RNA helicases [Burkholderia thailandensis
           E264]
          Length = 920

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 79/224 (35%), Gaps = 52/224 (23%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPSTLLC 67
           +D    TKS+         +  + A AGSGKT ++ QRV+RLL       A  HP  ++ 
Sbjct: 1   MDRSKFTKSQIAAIDHVNGNLQLIACAGSGKTEVVAQRVVRLLQPISVGGAGCHPENIVA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            T T  AAAE+  R+                 +I  + G                     
Sbjct: 61  FTFTDKAAAELKERIHTRCHE-----------QIGNVTG--------------------- 88

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITS--HFAIADEEQSKKLIEEAKKS-------TLA 178
              + V TIH +C  +++     + +     + + ++ Q    ++   K+       TL 
Sbjct: 89  LADMYVGTIHGYCLELLK-----SEVPQYMKYEVLNDVQQALFVDRHSKASGLTQSTTLD 143

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIF 222
              L    + +     +  +  D   +  + +  +  + LK+  
Sbjct: 144 GKPLKRYTDTRNYVSALAILREDHPCDEALLEDNTVASHLKIYE 187


>gi|306835515|ref|ZP_07468529.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
           49726]
 gi|304568572|gb|EFM44123.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
           49726]
          Length = 1059

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 24/186 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T+ +  +   P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 21  PTEEQAHVIEGPFGPKLVVAGAGAGKTETMASRVVYLVANGYVRPEEVLGLTFTRKAAQQ 80

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+   +             +   I    P    ++                 V T  
Sbjct: 81  LEQRIRRQLIQL---------RDSGLIVPGSPAAEALNNI------------APTVATYD 119

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++   +++++ L   +     I  E +   +  +  K+    +   + + L      +L+
Sbjct: 120 SYAGELVREYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKL--SDEKTLGSITEVLLK 177

Query: 198 ISNDED 203
           I++D D
Sbjct: 178 ITSDMD 183


>gi|217034405|ref|ZP_03439819.1| hypothetical protein HP9810_884g10 [Helicobacter pylori 98-10]
 gi|216943136|gb|EEC22608.1| hypothetical protein HP9810_884g10 [Helicobacter pylori 98-10]
          Length = 675

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +   + S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSQSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|134097688|ref|YP_001103349.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291006353|ref|ZP_06564326.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910311|emb|CAM00424.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 693

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E    ++ +   + E ++A  P     V A AG+GKT  +  R+  L+      P  +L 
Sbjct: 3   EQPRLLEGLDPEQREAVVA--PRGPVCVLAGAGTGKTRTITHRIAYLVQRGLVAPQQVLA 60

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
           +T T  AA EM  R+   + A    +    +A   +++   P   D
Sbjct: 61  VTFTARAAGEMRTRLR-ALGAAGVQAQTFHAAAFRQLRYFWPRVHD 105


>gi|257464157|ref|ZP_05628538.1| DNA helicase II [Fusobacterium sp. D12]
 gi|317061673|ref|ZP_07926158.1| DNA helicase II [Fusobacterium sp. D12]
 gi|313687349|gb|EFS24184.1| DNA helicase II [Fusobacterium sp. D12]
          Length = 901

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 41/196 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K++Q +         V A  GSGKT  LV+R + LL      PS +L  T T+ AA E+
Sbjct: 3   DKNQQKVVQYTEGPLLVIAGPGSGKTKTLVERSIHLLAEKKIEPSQILLSTFTEKAAREL 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ + +                                        +   + + T+H+
Sbjct: 63  RMRIQKALQEKGVSV---------------------------------SIEEMYLGTMHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I++++   ++  +   + DEE+ K  +    +       L+   E    F+E    
Sbjct: 90  IWLRILEEYITYSHYENGIEVLDEEEEKFFLYSQLRQF---KQLNFYME----FFEREHS 142

Query: 199 SNDEDIETLISDIISN 214
             D     L+  I S 
Sbjct: 143 YGDWAQSRLLQSIFSK 158


>gi|326384946|ref|ZP_08206620.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395]
 gi|326196336|gb|EGD53536.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395]
          Length = 1123

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 5/166 (3%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           P R+  + A+AG+GKT+ +V   +R +      + LL  T + AA+AE+  R    +T  
Sbjct: 17  PDRTLVLEASAGTGKTYAIVALAVRYIAHGVPVADLLMATFSNAASAELRDRTHSRLTEC 76

Query: 90  SHLSDEILSAEITKIQ----GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                +  +A  +           + +++ + R  L   L       + T H FC  ++ 
Sbjct: 77  VSALADPEAARTSDDDLVAFLADADVAEVVRRREYLTDALSDFDAATMATTHTFCNRMLA 136

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                      F I +    + + E A+ + L+    D +     A
Sbjct: 137 VLGFLGGRQQQFPILENVD-EMVAEIARDAYLSRFSGDPDNAPSYA 181


>gi|291556400|emb|CBL33517.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum V10Sc8a]
          Length = 792

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 68/234 (29%), Gaps = 90/234 (38%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL----------------- 57
             S+T   Q  A      +  + A AGSGKT +L  R+  +LL                 
Sbjct: 14  YFSRTNDMQKKAVFRINGAVLIVAGAGSGKTTVLCNRIANMLLFGNAYNSNTVRELSDDD 73

Query: 58  ---------------------------ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
                                          P  +L +T T  AAAE+  R+  +     
Sbjct: 74  VAFAQSFLAGEIDNFDAAEHLSEIFGEDRVKPWNILAVTFTNKAAAELKERLENMGADV- 132

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                  G+   T H+ C  I++Q   E
Sbjct: 133 --------------------------------------DGIWAATFHSACVRILRQDIEE 154

Query: 151 ANIT--SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
             +   S+F I D +   K+I    K+ +    + +     KA   ++  S D+
Sbjct: 155 LGMGYKSNFTIYDTDDQLKVI----KTVMKEHNISDKAVTPKAVQNLISRSKDK 204


>gi|154685618|ref|YP_001420779.1| YjcD [Bacillus amyloliquefaciens FZB42]
 gi|154351469|gb|ABS73548.1| YjcD [Bacillus amyloliquefaciens FZB42]
          Length = 761

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 36/133 (27%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
               I   + +    ++      V A AGSGKT +L  R   ++      P  +L +T T
Sbjct: 131 LFPGIGLNREQMKAVTETDGPLLVLAGAGSGKTRVLTARAAHMIEHLGISPENMLLVTFT 190

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AEM  R+       +                                        L
Sbjct: 191 TKAVAEMKERMANEYGLAAGKV-----------------------------------SRL 215

Query: 132 KVQTIHAFCEAIM 144
              T H+F   I+
Sbjct: 216 VTGTFHSFFYKIL 228


>gi|222823786|ref|YP_002575360.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
 gi|222539008|gb|ACM64109.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
          Length = 675

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 17  ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQ   A  P     + A+AG+GKT  +V R+  LL    +P  ++ LT T  A+
Sbjct: 3   LSRLNEEQYKAACAPFGHNLIIASAGTGKTSTIVARIAFLLQNGTNPEKIMLLTFTNKAS 62

Query: 76  AEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
            EM  R+         S ++     +    +  +  ++  + +A  L + +         
Sbjct: 63  KEMIERLGRYFDKNITSKITAGTFHSTAYTLLKQLNHEIILKQASELKVLLRSIFEK--- 119

Query: 134 QTIH 137
           +T H
Sbjct: 120 RTFH 123


>gi|188025634|ref|ZP_02959292.2| hypothetical protein PROSTU_01128 [Providencia stuartii ATCC 25827]
 gi|188022554|gb|EDU60594.1| hypothetical protein PROSTU_01128 [Providencia stuartii ATCC 25827]
          Length = 1202

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 79/218 (36%), Gaps = 30/218 (13%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHP- 62
           Q  S+ +D  S     Q           + A+AG+GKT+ +    LRLLL     NA P 
Sbjct: 2   QISSQLLDAFSLPLQGQR---------LIEASAGTGKTYTIGILYLRLLLGLGGENAFPR 52

Query: 63  ----STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE-----ILSAEITKIQGKKPNKSD 113
                 +L +T T+AA  E+  R+ E I                  E  ++  + P    
Sbjct: 53  PLTVEEILVVTFTEAATNELRGRIRERIHKMRLACIRDGVGFEKEPEYLELLSQIPTPEQ 112

Query: 114 MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
              A + L+T         + TIH FC+ ++     E+ +   F     +    + ++A 
Sbjct: 113 REFAINWLLTAERQMDEAAIYTIHGFCQRMLVHNAFESGV--LFEQTMIQDELPIQKQAC 170

Query: 174 KSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
                      +  + K       +S     E L++DI
Sbjct: 171 ADFWRRHFYPLDYSMAKVV-----LSQWNSPEALLADI 203


>gi|123443510|ref|YP_001007483.1| exonuclease V subunit beta [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090471|emb|CAL13339.1| exodeoxyribonuclease V beta chain [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 1209

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+ + 
Sbjct: 21  LIEASAGTGKTFTIGVLYLRLLLGLGGEAAFRRPLMVEEILVVTFTEAATEELRGRIRDN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I          +S +    +      +D++KA   L+          + TIH FC+ ++ 
Sbjct: 81  IHELRIACVRGVSDDPMH-KDLLAEITDLNKAAADLLAAERQMDEAAIYTIHGFCQRMLA 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F     +  + L  +A       
Sbjct: 140 NNAFESGI--LFEQTLVQDEQPLRRQACADFWRR 171


>gi|296136948|ref|YP_003644190.1| UvrD/REP helicase [Thiomonas intermedia K12]
 gi|295797070|gb|ADG31860.1| UvrD/REP helicase [Thiomonas intermedia K12]
          Length = 669

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 36/153 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++   +  +    V A AGSGKT ++  ++ RLL A   P  +  +T T  A     
Sbjct: 3   NAAQERAVAHLSGPCLVIAGAGSGKTRVITHKIGRLLRAGLEPDQIAAITFTNKA----- 57

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                                           ++M +    L+        L + T HA 
Sbjct: 58  -------------------------------AAEMRERAAQLVDKRGVASKLAISTFHAL 86

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
              I+++      +   F+I   +    L+ +A
Sbjct: 87  GVRILRESGQALGLKPKFSILAADDVTGLLRDA 119


>gi|254516482|ref|ZP_05128541.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3]
 gi|219674905|gb|EED31272.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3]
          Length = 1055

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 31/145 (21%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           ++SA AGSGKT+ L Q++ +LL      P+ ++  T TK AA E+  RV   +     L 
Sbjct: 11  FISAGAGSGKTYSLTQKLEQLLSSQEVSPAGVIATTFTKLAAGELKERVRSKLIESGQLG 70

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                         +        + T++  C  ++++F  EA++
Sbjct: 71  ------------------------------VANQMEQALIGTVNGVCGDLLRRFAFEAHM 100

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLA 178
                + DE Q   L  +A +  LA
Sbjct: 101 PPDQLVLDEAQGDLLFYQAIEHALA 125


>gi|227502912|ref|ZP_03932961.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227076334|gb|EEI14297.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 1059

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 24/186 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T+ +  +   P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 21  PTEEQAHVIEGPFGPKLVVAGAGAGKTETMASRVVYLVANGYVRPEEVLGLTFTRKAAQQ 80

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+   +             +   I    P    ++                 V T  
Sbjct: 81  LEQRIRRQLIQL---------RDSGLIVPGSPAAEALNNI------------APTVATYD 119

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++   +++++ L   +     I  E +   +  +  K+    +   + + L      +L+
Sbjct: 120 SYAGELVREYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKL--SDEKTLGSITEVLLK 177

Query: 198 ISNDED 203
           I++D D
Sbjct: 178 ITSDMD 183


>gi|262067581|ref|ZP_06027193.1| ATP-dependent nuclease subunit A [Fusobacterium periodonticum ATCC
           33693]
 gi|291378696|gb|EFE86214.1| ATP-dependent nuclease subunit A [Fusobacterium periodonticum ATCC
           33693]
          Length = 1043

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  VSA+AG+GKT+ L    +  L   ++        +L +T T+ A AE+   +L+ +
Sbjct: 5   KNLVVSASAGTGKTYRLSLEYIAALSKKSNAEAVDYKNILVMTFTRKATAEIKEGILKKL 64

Query: 87  TAWSHLSDE---------------------------ILSAEITKIQGKK-PNKSDMSKAR 118
           + +  + D                             L   I KI+     NK  +    
Sbjct: 65  SEFIEIYDICKNSKLSVRDTILNNKNLDEKKKNNYINLIESIEKIEEDLTVNKEFLENLA 124

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
           ++   I+     LK+ TI AF   I +   +  N+     +++ DEE++    ++  +S 
Sbjct: 125 NIYKDIIRNKEKLKIYTIDAFLNIIFKN--IVVNLMKIKSYSLIDEEENSVYYKKILESI 182

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLIS---DIISNRTALKL 220
                   N++L   F      +++++I+  IS   ++IS+R    L
Sbjct: 183 FT------NKKLFNDFKNFFTENSEKNIDKYISIIGNLISSRWKYIL 223


>gi|213965852|ref|ZP_03394043.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
 gi|213951430|gb|EEB62821.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
          Length = 1164

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 20/159 (12%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  +   P     V A AG+GKT  +  RV+ L+      P  +L LT T+ AA E
Sbjct: 23  PTPQQAAVIGAPMEPMLVVAGAGAGKTATMAARVVWLVANGFIRPEEVLGLTFTRKAARE 82

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ + + A +  +     A    +   +                          T  
Sbjct: 83  LGVRIRQQLNALASSAAFRAQASPEVLASLEVIAPTTL-------------------TYD 123

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           A+   ++  + L         I D     +L  E  ++ 
Sbjct: 124 AYASEVVSNYGLLLPTEPGVTIMDGATQWQLAWETARNV 162


>gi|167750343|ref|ZP_02422470.1| hypothetical protein EUBSIR_01317 [Eubacterium siraeum DSM 15702]
 gi|167656703|gb|EDS00833.1| hypothetical protein EUBSIR_01317 [Eubacterium siraeum DSM 15702]
          Length = 792

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 68/234 (29%), Gaps = 90/234 (38%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL----------------- 57
             S+T   Q  A      +  + A AGSGKT +L  R+  +LL                 
Sbjct: 14  YFSRTNDMQKKAVFRINGAVLIVAGAGSGKTTVLCNRIANMLLFGNAYNSNTVRELSDDD 73

Query: 58  ---------------------------ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
                                          P  +L +T T  AAAE+  R+  +     
Sbjct: 74  VAFAQSFLAGEIDNFDAAERLSEIFGEDRVKPWNILAVTFTNKAAAELKERLENMGADV- 132

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                  G+   T H+ C  I++Q   E
Sbjct: 133 --------------------------------------DGIWAATFHSACVRILRQDIEE 154

Query: 151 ANIT--SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
             +   S+F I D +   K+I    K+ +    + +     KA   ++  S D+
Sbjct: 155 LGMGYKSNFTIYDTDDQLKVI----KTVMKEHNISDKAVTPKAVQNLISRSKDK 204


>gi|317179655|dbj|BAJ57443.1| DNA helicase II [Helicobacter pylori F30]
          Length = 681

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +  + +++ AS       + A AGSGKT  L  R+  L+ A        L LT T   
Sbjct: 8   LDNLNEVQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKT 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++                             K + L+  +L         
Sbjct: 68  SKEMQERALKLL-----------------------------KNQTLIPPLL--------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL------------IEEAKKSTLASIML 182
           T H F    ++Q          F++ D +++K L            I + K   +   M 
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDETKTLCKQLKISSFRASISQIKNGMIDLSMQ 150

Query: 183 DNN-EELKKAFYEILEISNDEDIETLI 208
           D+   +  + +   L+  N  D + L+
Sbjct: 151 DSECHKAYELYQNALKKDNLVDFDDLL 177


>gi|218294885|ref|ZP_03495739.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218244793|gb|EED11317.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 868

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 27/164 (16%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            A+AG+GKTH LV+ +  L+ +      +  LT T+ AA E+  R    + A S     +
Sbjct: 5   LASAGTGKTHALVEELKGLIQSGVPLRRIAALTFTRKAAEELRGRAKRAVLALSAEDPRL 64

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
             AE                             G    TIH F    ++      ++   
Sbjct: 65  KEAERE-------------------------VHGALFTTIHGFMAEALRHTAPLLSLDPD 99

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           FA+ D   ++ L  E  +S L    LD    L +A   +     
Sbjct: 100 FALLDTFLAEALFLEEARSLLYRKGLDGG--LARALLHLYRKRT 141


>gi|326443254|ref|ZP_08217988.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1238

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 41/158 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +         V A  G+GKT  LV+ V   + A A P+ +L LT ++ AA E+  R
Sbjct: 16  AQRAVVDHRGGPLLVLAGPGTGKTTTLVEAVAERVAAGADPARVLVLTFSRKAAVELRDR 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +                                           G +  T H+FC 
Sbjct: 76  MALRLGGAR---------------------------------------GPQATTFHSFCY 96

Query: 142 AIMQQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLA 178
           A+++    +A++ +    +    +   ++ E     L 
Sbjct: 97  ALVRAH-QDADLFAEPLRLLSGPEQDVMVRELLTGQLD 133


>gi|326796039|ref|YP_004313859.1| exodeoxyribonuclease V subunit beta [Marinomonas mediterranea
           MMB-1]
 gi|326546803|gb|ADZ92023.1| exodeoxyribonuclease V, beta subunit [Marinomonas mediterranea
           MMB-1]
          Length = 1233

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLL+ +              +L +T T+AA AE+  R+   
Sbjct: 27  LIEASAGTGKTYTIANLYLRLLVPSGSECDLERPLTVDQILVVTFTEAATAELKGRIRVR 86

Query: 86  ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I A         S +   ++ +     + ++     L+   +      V TIH FC+ ++
Sbjct: 87  IRAARKTLMSGHSDDAFLMEWRNHFTDAQIADGIEKLLYAEKQMDEAAVFTIHGFCQRML 146

Query: 145 QQFPLEANITSHFAIADEEQS--KKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            Q   E+ +     I  +E +     +++  +  +A +       +++ + E
Sbjct: 147 SQNAFESRMLFRQEIETDEMAPLTVAVKDVWRRFVADLSETEASFVRRFWAE 198


>gi|110668090|ref|YP_657901.1| DNA helicase II [Haloquadratum walsbyi DSM 16790]
 gi|109625837|emb|CAJ52275.1| DNA helicase II [Haloquadratum walsbyi DSM 16790]
          Length = 965

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 56/191 (29%), Gaps = 50/191 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           ++    +Q L         V A AG+GKT  + +R   ++   N  P  +L +T T  AA
Sbjct: 4   LNPNDRQQKLIDSKQGIHVVDAGAGTGKTFTVTRRYAEIVDRDNVEPEDVLLVTFTTNAA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R++                                                 +QT
Sbjct: 64  TEMKDRIVTHCDYGMRE-----------------------------------LSDAPIQT 88

Query: 136 IHAFCEAIMQQF----PLEANITSHFA-----IADEEQSKKLIEEAKKSTLASIMLDNNE 186
            H+ C  I+ +     P    I          I DE   K    E  +        D++ 
Sbjct: 89  FHSLCRDILMEHGFKTPTLLGIDDRITGSTRVIEDENVEKAQFREFIRR-----FSDDHP 143

Query: 187 ELKKAFYEILE 197
           E    F  + E
Sbjct: 144 EHNDFFRAVEE 154


>gi|206890653|ref|YP_002248066.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742591|gb|ACI21648.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 554

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 38/131 (29%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++  K++++      R   + A  G+GKT  +  +++ LL +  +P  +  LT T+ AA 
Sbjct: 1   MNLNKNQKIAVETSDRYLCILAGPGTGKTLTITAKIIHLLNSGINPEEIAALTFTQKAAI 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RVL  +     L                                        + T 
Sbjct: 61  EMRERVLNNLHKKEDLP--------------------------------------FIGTF 82

Query: 137 HAFCEAIMQQF 147
           H  C  ++++F
Sbjct: 83  HLLCIKLLREF 93


>gi|300722702|ref|YP_003711992.1| putative UvrD/REP helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297629209|emb|CBJ89806.1| putative UvrD/REP helicase [Xenorhabdus nematophila ATCC 19061]
          Length = 631

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 44/180 (24%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            E ++ ++      V A AGSGKT +L +RV R L+ N     ++ LT +  AA EM  R
Sbjct: 8   QEAVVHAEIGLPMQVLAAAGSGKTRVLTERV-RYLIENTRKDGIIALTFSNKAAEEMQIR 66

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
                                                  L  +        + TIHA  +
Sbjct: 67  ---------------------------------------LADLDVLSERCWIATIHAVAQ 87

Query: 142 AIMQQFPLEANITSHFAIAD-EEQSKKLIEEAKKST---LASIMLDNNEELKKAFYEILE 197
            I+ Q+     + S   I + +   K +  ++ + +   +   +   +E+ +K    I+ 
Sbjct: 88  RILDQYGHTIGLPSELHIYERDLDRKTVFLQSLRESGIGIDDFLNAGDEKTRKNRERIIH 147


>gi|311029838|ref|ZP_07707928.1| ATP-dependent DNA helicase [Bacillus sp. m3-13]
          Length = 628

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 36/130 (27%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           ++Q   S       V A AGSGKT +L+ RV  ++      P +++ +T T  AA EM  
Sbjct: 13  AQQEAVSTVDGPLLVLAGAGSGKTRVLITRVAYMVQEEKIDPKSIMLITFTAKAANEMKE 72

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+    +  S +   +L+                                    T H+  
Sbjct: 73  RLRLYESPGSRMFASLLT-----------------------------------GTFHSIF 97

Query: 141 EAIMQQFPLE 150
             ++Q    E
Sbjct: 98  YRMLQHHHPE 107


>gi|111018834|ref|YP_701806.1| exodeoxyribonuclease V beta subunit [Rhodococcus jostii RHA1]
 gi|110818364|gb|ABG93648.1| exodeoxyribonuclease V beta subunit [Rhodococcus jostii RHA1]
          Length = 1103

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 15/159 (9%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A+AG+GKT+ +V    R +       S LL +T ++AA  E+  R  E   +
Sbjct: 14  PEGTTVLEASAGTGKTYAIVGLAARFVAEGGVDLSQLLLVTFSRAATQELRERTRERFGS 73

Query: 89  WSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +    +  +A ++  Q      + +  +++  R  L+  L       + T H+FC+ ++
Sbjct: 74  AAAALADPAAARLSADQLIRHLAEADTGEVTLRRRRLLQALSDFDAATIVTTHSFCQRML 133

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                   +     IA E     ++ EA       ++ D
Sbjct: 134 D------GLG----IAGERDPDTVLVEAADDLTTEVIAD 162


>gi|327395040|dbj|BAK12462.1| exodeoxyribonuclease V beta chain RecB [Pantoea ananatis AJ13355]
          Length = 1179

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA AE+  R+ + 
Sbjct: 21  LIEASAGTGKTFTIGLLYLRLLLGLGGENAWRRPLSVEEILVVTFTEAATAELRGRIRDN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S      Q       D+ +A   L+          + TIH FC+ ++ 
Sbjct: 81  IHQLRLACVRGKSHNPMH-QQLMVQIPDLPQAASQLLAAERQMDEAAIFTIHGFCQRMLN 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + + EQ+  L+ +A       
Sbjct: 140 LNAFESGMLFEQELIENEQT--LLRQATADFWRR 171


>gi|167748929|ref|ZP_02421056.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662]
 gi|167651551|gb|EDR95680.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662]
          Length = 618

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
          +    +++    +       V A  GSGKT ++ +R   L+      PS +L +T TKAA
Sbjct: 1  MTEWNEAQTKAITHKDGPMMVLAGPGSGKTTVITERTKYLIEHCGVKPSNILVITFTKAA 60

Query: 75 AAEMSHRVLEIITA 88
          AAEM  R L++   
Sbjct: 61 AAEMKERFLKLAGR 74


>gi|297380108|gb|ADI34995.1| ATP-dependent DNA helicase pcrA [Helicobacter pylori v225d]
          Length = 675

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ +     +   A        V A+AG+GKT  +V R+L LL     P  +L LT T 
Sbjct: 1   MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A+ EM  RV +     S +       ++    K      +     + + LL +I++T  
Sbjct: 61  KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN 120

Query: 130 GLK 132
            + 
Sbjct: 121 AID 123


>gi|311087345|gb|ADP67425.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 1174

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 32/213 (15%)

Query: 35  WVSANAGSGKTHILV-------------QRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + A+AG+GKT  +V             +   + LL       +L +T T  A  E+  R
Sbjct: 22  LIEASAGTGKTFTIVLLYLRLLLGIGEKKIYKKKLL----VHEILVVTFTNKAKEELYIR 77

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + I           +++ +  Q       D+++A ++L           + TIH+FC+
Sbjct: 78  IKDGIQNMYLTCINKTTSD-SSFQFFLKEIHDINEAIYVLKRAQNDMNSSSIYTIHSFCQ 136

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+Q      N      I + E +  L  +A +           E++ K  Y+       
Sbjct: 137 HILQLHTFHFNNIFEEKIIENEDN--LYLQATQDFWRRFFYTLPEDIIKIIYQDY----- 189

Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +  + L+  I       K  F+  S  +  KI+
Sbjct: 190 KSPDHLLKTI-------KPFFYIKSINFPTKIL 215


>gi|256845409|ref|ZP_05550867.1| exodeoxyribonuclease V beta subunit [Fusobacterium sp. 3_1_36A2]
 gi|256718968|gb|EEU32523.1| exodeoxyribonuclease V beta subunit [Fusobacterium sp. 3_1_36A2]
          Length = 1075

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  + A+AG+GKT+ L    +  L             +L +T T+ A AE+   +L  +
Sbjct: 5   KNLVLKASAGTGKTYRLSLEYIIALSKKGDIEPIDYKNILVMTFTRKATAEIKEGILNKL 64

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-------------------- 126
           + +  + +     E + I+    +K    K +   + ++E                    
Sbjct: 65  SEFMEIYEISKKNEFSVIEAISNSKLIDDKKKSNYLNLIESIKNIEPNLVIDNNFLENLS 124

Query: 127 --------TPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
                       LK+ TI AF   I +   +  N+     + + DEE +    ++  ++ 
Sbjct: 125 KVNKEIIKNKEKLKIYTIDAFFNIIFKN--IVTNLMKIKSYTMLDEEDNFSYYKKVLENI 182

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
                  NNE+L   F      +++++I+    +I  +IS+R    L
Sbjct: 183 F------NNEKLFNDFKNFFTENSEKNIDNYISIIQRLISSRWKYIL 223


>gi|149198591|ref|ZP_01875635.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
 gi|149138306|gb|EDM26715.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
          Length = 645

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 41/186 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +     ++      T    + A AG+GKTH L  RV +L+ +      +L LT T+ AA 
Sbjct: 1   MDLNPQQEKAVQHKTGPLLLLAGAGTGKTHTLCCRVAKLIQSGVPAHKILMLTFTRKAAE 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R+           D ++  +   + G                            T 
Sbjct: 61  EMKQRI-----------DRLMDQDCPVLAG----------------------------TF 81

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+     ++   +  N++  F   D  Q+K + +E KK    +I   +  E  + F    
Sbjct: 82  HSIAFNDLKNLGILNNLSGIFD--DTSQAKFIRKELKKKCFEAISSYSPREFMRFFSLCT 139

Query: 197 EISNDE 202
               +E
Sbjct: 140 NTMEEE 145


>gi|16082036|ref|NP_394460.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum
           DSM 1728]
 gi|10640315|emb|CAC12129.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum]
          Length = 885

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 33/123 (26%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V A  G+GKT  + Q+ L L+ +   P+ +LC+T T  AA  M  R+++ +       D
Sbjct: 5   VVIAGPGTGKTTSISQKYLELVQSGVDPNDILCITFTNKAAENMRSRIIKALERSGTQID 64

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               + V T H+F  + ++++     + 
Sbjct: 65  ---------------------------------LSVINVYTFHSFANSAIRRYGYRGIVN 91

Query: 155 SHF 157
            +F
Sbjct: 92  QNF 94


>gi|219681805|ref|YP_002468191.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219624648|gb|ACL30803.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
          Length = 1174

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 32/213 (15%)

Query: 35  WVSANAGSGKTHILV-------------QRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + A+AG+GKT  +V             +   + LL       +L +T T  A  E+  R
Sbjct: 22  LIEASAGTGKTFTIVLLYLRLLLGIGEKKIYKKKLL----VHEILVVTFTNKAKEELYIR 77

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + I           +++ +  Q       D+++A ++L           + TIH+FC+
Sbjct: 78  IKDGIQNMYLTCINKTTSD-SSFQFFLKEIHDINEAIYVLKRAQNDMNSSSIYTIHSFCQ 136

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+Q      N      I + E +  L  +A +           E++ K  Y+       
Sbjct: 137 HILQLHTFHFNNIFEEKIIENEDN--LYLQATQDFWRRFFYTLPEDIIKIIYQDY----- 189

Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +  + L+  I       K  F+  S  +  KI+
Sbjct: 190 KSPDHLLKTI-------KPFFYIKSINFPTKIL 215


>gi|228950057|ref|ZP_04112242.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809584|gb|EEM56020.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 702

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 56/214 (26%)

Query: 18  SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           ++   +Q+ A  +        A AGSGKT +L  +V  ++     +P+ ++ LT TK AA
Sbjct: 59  TKLNEKQIEAVRNVNGPVITLAGAGSGKTSVLTSKVGYMMNYKQINPANIMILTFTKKAA 118

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+ ++                            +S AR LL             T
Sbjct: 119 EEMRSRISDLPG------------------------LSISGARQLLA-----------GT 143

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+    +++     A I     I   E+ K +   A K+ L  + L ++ E +     I
Sbjct: 144 FHSIFLRVIRN----AGINQK--IISSEKMKHI---AIKNILRDLKLADSYEPETIVSMI 194

Query: 196 LEISN----------DEDIETLISDIISNRTALK 219
               N             I+  + DI +     K
Sbjct: 195 GYFKNHMIKPSDLPTKSVIDRELRDIYAMYEQWK 228


>gi|312623315|ref|YP_004024928.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203782|gb|ADQ47109.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 954

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 33/149 (22%)

Query: 32  RSAWV-SANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            +  V SA+AG GKT  +    + ++    A P+ ++C+T+T+ AA E+  R++      
Sbjct: 2   GNIIVYSASAGCGKTESIANLYIDIINSEKATPNEIVCITYTEKAAKELKSRIISK---- 57

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                    +K + L +  +       ++TIH+FC  +++ +  
Sbjct: 58  -------------------------AKQKGLDLLTISKIQNSHIKTIHSFCMYLLRFYWA 92

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLA 178
            A + ++F I       +L+ +   + L+
Sbjct: 93  WARVDANFKIV--PDQNRLMLKLIDNYLS 119


>gi|331016621|gb|EGH96677.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1104

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 38/146 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L   T+ +   A    R   V A  G+GKT  LV R+  L+     PS +L LT T  AA
Sbjct: 193 LPPMTQVQANAAHASERFVNVVAGPGTGKTTTLVHRIKHLIEQGVTPSKILVLTFTNKAA 252

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+                                        + +     +   T
Sbjct: 253 HELVERMR--------------------------------------ASAIPGASDVWAGT 274

Query: 136 IHAFCEAIMQQFPLEANITSHFAIAD 161
            HAF    ++++     + +   +AD
Sbjct: 275 FHAFGLEFLRKYHDLFQLKADVGMAD 300


>gi|312128494|ref|YP_003993368.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778513|gb|ADQ07999.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108]
          Length = 969

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 32/146 (21%)

Query: 34  AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
              SA+AG GKT  +    + ++    A P+ ++C+T+T+ AA E+  R++         
Sbjct: 20  IIYSASAGCGKTENIANLYIDIINSKKATPNEIVCITYTEKAARELKSRIISK------- 72

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                 +K R L +  +       ++TIH+FC  +++ +   A 
Sbjct: 73  ----------------------AKQRGLDLLTISKIQNSHIKTIHSFCMYLLRFYWAWAR 110

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLA 178
           + ++F I       +L+ +   + L+
Sbjct: 111 VDANFKIV--PDQNRLMLKLIDNYLS 134


>gi|294782363|ref|ZP_06747689.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 1_1_41FAA]
 gi|294481004|gb|EFG28779.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 1_1_41FAA]
          Length = 1046

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 96/227 (42%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  VSA+AG+GKT+ L    +  L   A+        +L +T T+ A +E+   +L+ +
Sbjct: 8   KNLVVSASAGTGKTYRLSLEYITALSKKANAEAIDYKNILVMTFTRKATSEIKEGILKKL 67

Query: 87  TAW---------------------SHLSDEILSAEITKIQGKKPNKSD-------MSKAR 118
           + +                      +L ++  +  ++ I+  + N+ D       +    
Sbjct: 68  SEFLEIYDICKNSKLSVRDTISNNKNLDEKKKNNYLSLIESIEKNEKDLVVDCEFLENLS 127

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
           ++   I+     LK+ TI AF   I +   +  N+     +++ DE ++    ++  ++ 
Sbjct: 128 NVYKDIIRNKEKLKIYTIDAFLNIIFKN--IVLNLMKIKSYSLIDENENSVYYKKVLENI 185

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
                   N++L   F +    +++++I+    +I  +IS+R    L
Sbjct: 186 FT------NKKLFYDFKKFFSENSEKNIDNYISIIQKLISSRWKYIL 226


>gi|219682360|ref|YP_002468744.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219622093|gb|ACL30249.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
          Length = 1174

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 32/213 (15%)

Query: 35  WVSANAGSGKTHILV-------------QRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + A+AG+GKT  +V             +   + LL       +L +T T  A  E+  R
Sbjct: 22  LIEASAGTGKTFTIVLLYLRLLLGIGEKKIYKKKLL----VHEILVVTFTNKAKEELYIR 77

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + I           +++ +  Q       D+++A ++L           + TIH+FC+
Sbjct: 78  IKDGIQNMYLTCINKTTSD-SSFQFFLKEIHDINEAIYVLKRAQNDMNSSSIYTIHSFCQ 136

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+Q      N      I + E +  L  +A +           E++ K  Y+       
Sbjct: 137 HILQLHTFHFNNIFEEKIIENEDN--LYLQATQDFWRRFFYTLPEDIIKIIYQDY----- 189

Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +  + L+  I       K  F+  S  +  KI+
Sbjct: 190 KSPDHLLKTI-------KPFFYIKSINFPTKIL 215


>gi|15617053|ref|NP_240266.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11132307|sp|P57529|EX5B_BUCAI RecName: Full=Exodeoxyribonuclease V beta chain
 gi|25289140|pir||H84982 exodeoxyribonuclease V (EC 3.1.11.5) 135 kD polypeptide [imported]
           - Buchnera sp. (strain APS)
 gi|10039118|dbj|BAB13152.1| exodeoxyribonuclease V 135 kD polypeptide [Buchnera aphidicola str.
           APS (Acyrthosiphon pisum)]
          Length = 1174

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 38/216 (17%)

Query: 35  WVSANAGSGKTHILV-------------QRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + A+AG+GKT  +V             +   + LL       +L +T T  A  E+  R
Sbjct: 22  LIEASAGTGKTFTIVLLYLRLLLGIGEKKIYKKKLL----VHEILVVTFTNKAKEELYIR 77

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + I           +++ +  Q       D+ +A ++L           + TIH+FC+
Sbjct: 78  IKDGIQNMYLTCINKTTSD-SSFQFFFKEIHDIKEAIYVLKRAQNDMNSSSIYTIHSFCQ 136

Query: 142 AIMQQF-PLEANITSHFA--IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            I+Q       +I   F   I + E +  L  +A +           E++ K  Y+    
Sbjct: 137 HILQLHTFHFNDI---FEEKIIENEDN--LYLQATQDFWRRFFYTLPEDIIKIIYQDY-- 189

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
              +  + L+  I       K  F+  S  +  KI+
Sbjct: 190 ---KSPDHLLKTI-------KPFFYIKSINFPTKIL 215


>gi|271969568|ref|YP_003343764.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512743|gb|ACZ91021.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 1228

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 28/156 (17%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           + ++  T  +  +         V A AGSGK+  +  RV+ L+      P  +L LT T+
Sbjct: 11  LGILPPTPEQAEVIEAGLEPMVVVAGAGSGKSETMAGRVVWLVANGLVRPEQVLGLTFTR 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E++ RV E +                              A  +   +LE  G   
Sbjct: 71  KAAGELAIRVRERLNGLVA-------------------------AEQVPAELLE--GEPT 103

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           + T HA+   ++    L   +     +     S +L
Sbjct: 104 ISTYHAYAARLVTDHALREALEPTMRLVSPAVSWQL 139


>gi|86742479|ref|YP_482879.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569341|gb|ABD13150.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1103

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 35/126 (27%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +         V A  G+GKT  LV+ V   + A A P ++L LT ++ AA E+  R
Sbjct: 31  AQRAVVEHGGGPLLVLAGPGTGKTATLVEAVAARIEAGADPRSILVLTFSRRAAGELRER 90

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   + A         +                                    T HA+C 
Sbjct: 91  ITARLGAEGGAGGGPGAW-----------------------------------TFHAWCL 115

Query: 142 AIMQQF 147
           A+++  
Sbjct: 116 ALLRAH 121


>gi|325066921|ref|ZP_08125594.1| UvrD/REP helicase [Actinomyces oris K20]
          Length = 84

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
          Q  +E + + + T+ +  + +       V A AGSGKT  + QRV+ L+      P  +L
Sbjct: 12 QALAEALSIHTPTQEQARVIAHRLSPLLVVAGAGSGKTATMAQRVVYLVATGQVRPDQIL 71

Query: 67 CLTHTKAAAAEM 78
           LT T+ A AE+
Sbjct: 72 GLTFTRKATAEL 83


>gi|222528367|ref|YP_002572249.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455214|gb|ACM59476.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
          Length = 951

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 32/146 (21%)

Query: 34  AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
              +A+AG GKT  +    + L+    A PS ++C+T+T+ AA E+ +R++         
Sbjct: 5   IIYTASAGCGKTESIANLYIDLINSQKALPSEIVCITYTEKAARELKNRIISK------- 57

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                 +K R L +  +       ++TIH+FC  +++ +   A 
Sbjct: 58  ----------------------AKQRGLDLLTISKIQNSHIKTIHSFCMYLLRFYWAWAK 95

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLA 178
           + ++F I    +  +LI +     L+
Sbjct: 96  VDTNFKIV--PEQNRLILKLVDHYLS 119


>gi|294508356|ref|YP_003572414.1| DNA helicase II [Salinibacter ruber M8]
 gi|294344684|emb|CBH25462.1| DNA helicase II [Salinibacter ruber M8]
          Length = 1227

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 47/217 (21%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           S   D       ++   +       V A  G+GKT +LV R   L+      PS L+ +T
Sbjct: 141 SRPADWPDLNPDQRAAVTASMDPQLVVAGPGTGKTRVLVCRAAHLIEHEAVTPSRLVLVT 200

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA +++ R+  ++   +                                       
Sbjct: 201 FTRRAAQQLTSRLAALVGPEAQH------------------------------------- 223

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE---EAKKSTLASIMLDNNE 186
            ++  TIH FC   ++     A +   F + D+  +    +   EA +    +  L +  
Sbjct: 224 -VRAGTIHHFCYKTLRAHSAPAGVPDDFIVVDDTVTDAFWQRWYEAHERWCEANDLHSYR 282

Query: 187 ELKKAFYEI---LEISNDEDIETLIS--DIISNRTAL 218
           ++K     I   ++  +    E L +  +++ +R AL
Sbjct: 283 QVKTHVSRIKLGIDTVSGRLTEGLRAYGEMLGDRGAL 319


>gi|117165365|emb|CAL64823.1| putative helicase [Pseudomonas extremaustralis]
          Length = 597

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 42/157 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAE 77
           +  +EQ  A     S ++ A  GSGKT  L  ++   L         ++ +T+T  AA E
Sbjct: 8   ELNAEQSEAVLLPGSVFLVACPGSGKTRALTYKIAYELSRLESDRQFIVAITYTHRAADE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++    S                                        L + TIH
Sbjct: 68  IQERIEDLGVDTS---------------------------------------RLWIGTIH 88

Query: 138 AFCE-AIMQQFPLEA-NITSHFAIADEEQSKKLIEEA 172
           +FC   I++ + + A  +   + + D+ + +KL+E  
Sbjct: 89  SFCLEWIIKPYGIYAPELAPGYRVIDQHEREKLLERL 125


>gi|76802569|ref|YP_327577.1| ATP-dependent helicase [Natronomonas pharaonis DSM 2160]
 gi|76558434|emb|CAI50025.1| probable ATP-dependent helicase [Natronomonas pharaonis DSM 2160]
          Length = 960

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 45/203 (22%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +    ++ L         V A  G+GKT  + +R   ++   +  P  +L +T T++AAA
Sbjct: 5   TPNDEQKELIESTEGLYLVDAGPGTGKTFAITRRYGNIIDQPDVEPEDVLLVTFTRSAAA 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  R++E  T                                     L       +QT 
Sbjct: 65  EMKERIVEHSTYG-----------------------------------LRELADAPIQTF 89

Query: 137 HAFCEAIMQQF----PLEANITSHFAIADEEQSKKLIE-EAKKSTLASIMLDNNEELKKA 191
           H+ C  I+ +     P    +      +      +LIE E  +   +    +++E     
Sbjct: 90  HSHCHDILSEHGYATPRHLGLDGQITGSTRVVDNELIEGELFREFFSQFRSNHSE--YTD 147

Query: 192 FYEILEISNDEDIETLISDIISN 214
           FY +L  SN   +  LI ++ S 
Sbjct: 148 FYRVL--SNPGGLLDLIGELASK 168


>gi|19115253|ref|NP_594341.1| ATP-dependent DNA helicase, UvrD subfamily [Schizosaccharomyces
           pombe 972h-]
 gi|1723281|sp|Q10213|SRS2_SCHPO RecName: Full=ATP-dependent DNA helicase srs2
 gi|1184018|emb|CAA93344.1| ATP-dependent DNA helicase, UvrD subfamily [Schizosaccharomyces
           pombe]
          Length = 887

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 39/163 (23%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +     EQ ++   P +   + A  GSGKT +L  RV  LL  N      L+  T T  
Sbjct: 7   YLKFLNEEQRISVQSPHKYTQILAGPGSGKTRVLTARVAYLLQKNHIAAEDLIIATFTNK 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+  I+                            S+A  L+            
Sbjct: 67  AANEIKLRIEAILGN--------------------------SEASKLIS----------- 89

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H+     + ++     ++S++ IAD   ++ +++    S 
Sbjct: 90  GTFHSIAYKYLVKYGKHIGLSSNWLIADRNDTQAIMKRLLDSL 132


>gi|237752434|ref|ZP_04582914.1| ATP-dependent helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375923|gb|EEO26014.1| ATP-dependent helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 679

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S    +Q  A   P+    V A+AG+GKT  +V R+  LL     P+ +L LT T  AA
Sbjct: 3   LSNLNPQQKEACQAPSGHNLVIASAGTGKTSTIVGRISFLLQNGILPNEILLLTFTNKAA 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +EM  R+     A    + E  +      +  K   S + K    L  + ++    ++
Sbjct: 63  SEMLSRLSTKFDAKIVKTIEAGTFHAVAYRFLKAKDSIVLKQPRELKVLFKSLYDKRI 120


>gi|224418472|ref|ZP_03656478.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253827786|ref|ZP_04870671.1| ATP-dependent DNA helicase PcrA [Helicobacter canadensis MIT
           98-5491]
 gi|313142003|ref|ZP_07804196.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253511192|gb|EES89851.1| ATP-dependent DNA helicase PcrA [Helicobacter canadensis MIT
           98-5491]
 gi|313131034|gb|EFR48651.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 702

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 39/163 (23%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
            ++Q  + Q  A      +  + A AGSGKT  +  R+  L+      PS  L LT T  
Sbjct: 5   FLNQLNTSQKQAVTTIEGALLILAGAGSGKTKTITTRLAYLIDEVGIPPSNTLTLTFTNK 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R L ++   +     +                                     
Sbjct: 65  AANEMQKRALNMLKKSTSHPPLL------------------------------------- 87

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H F    ++ +        +F +AD + +KK+++E     
Sbjct: 88  CTFHKFGLLFLKFYISLLGRKINFILADSDDTKKILKELNCDL 130


>gi|156095560|ref|XP_001613815.1| UvrD/REP helicase [Plasmodium vivax SaI-1]
 gi|148802689|gb|EDL44088.1| UvrD/REP helicase, putative [Plasmodium vivax]
          Length = 1048

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 10/174 (5%)

Query: 16  LISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           L S    EQ+        R+  + A  GSGKT  L  R++R ++      +++C+T T  
Sbjct: 17  LFSNLSKEQIKIVQVPLNRNVCIIACPGSGKTSTLTARIIRSIIEKKK--SVVCITFTNY 74

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA ++  ++ + +     L  +               K D S   H    +      + +
Sbjct: 75  AANDLKEKITKKVNCLIDLYLDTDVRCKLFAGKTSSRKFDTSSKLHSKSKLKVLHTVMFI 134

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            TIH+FC  ++ ++         F I  +     +I+ A  +  AS +   + +
Sbjct: 135 GTIHSFCRYLLFKY------KGPFKILSDFICSNVIKLAFNNFYASFLKGKSAQ 182


>gi|217031822|ref|ZP_03437325.1| hypothetical protein HPB128_199g30 [Helicobacter pylori B128]
 gi|298735552|ref|YP_003728073.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Helicobacter
           pylori B8]
 gi|216946474|gb|EEC25076.1| hypothetical protein HPB128_199g30 [Helicobacter pylori B128]
 gi|298354737|emb|CBI65609.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Helicobacter
           pylori B8]
          Length = 681

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 51/207 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           L +   ++++  S       + A AGSGKT  L  R+  L+ +        L LT T  A
Sbjct: 8   LDNLNGAQKIATSHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R L+++   + +   +                                      
Sbjct: 68  SKEMQERALKLLKNQALIPPLL-------------------------------------C 90

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLD 183
           T H F    ++Q          F++ D ++ K L ++ K           K+ +  + + 
Sbjct: 91  TFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISNFRANISQIKNGMMDLSVQ 150

Query: 184 NNE--ELKKAFYEILEISNDEDIETLI 208
           ++E  +  + +   L+  N  D + L+
Sbjct: 151 DSECHKAYELYQNALKKDNLVDFDDLL 177


>gi|270264844|ref|ZP_06193108.1| hypothetical protein SOD_j00590 [Serratia odorifera 4Rx13]
 gi|270041142|gb|EFA14242.1| hypothetical protein SOD_j00590 [Serratia odorifera 4Rx13]
          Length = 1183

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRV---------LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +                         +L +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTFTIGALYLRLLLGLGQAAAFPRRLTVEEILVVTFTEAATEELRGRIRSN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I A        LS +   +        D+  A   L+          + TIH FC+ ++ 
Sbjct: 81  IHALRIACVRGLSKDPL-LSALMAEIDDLPDAAAQLLAAERQMDEAAIYTIHGFCQRMLT 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F     +    L  +A       
Sbjct: 140 HNAFESGI--LFEQTLVQDELPLRRQACADFWRR 171


>gi|21226292|ref|NP_632214.1| DNA helicase II [Methanosarcina mazei Go1]
 gi|20904537|gb|AAM29886.1| DNA helicase II [Methanosarcina mazei Go1]
          Length = 908

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 35/157 (22%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79
            S++       R   + A AG+GKT  L ++++ LLL  N  P++++  T T+ AA  M 
Sbjct: 19  DSQKKAVLSDRRHIRIIAGAGAGKTETLTRKIVCLLLYENVKPASIVAFTFTEKAAQGMK 78

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV + +                                     I    G + + TIH +
Sbjct: 79  SRVYDRVRQLGG------------------------------EEICAKLGEMYIGTIHGY 108

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           C  +++           + + DE Q    +       
Sbjct: 109 CSFLLENHFKF----GDYGVLDENQETAFLMRVGWEL 141


>gi|238764002|ref|ZP_04624958.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia kristensenii ATCC 33638]
 gi|238697819|gb|EEP90580.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia kristensenii ATCC 33638]
          Length = 309

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+ + 
Sbjct: 18  LIEASAGTGKTFTIGVLYLRLLLGLGGEAAFRRPLMVEEILVVTFTEAATEELRGRIRDN 77

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I          +S +    +      +D++KA   L+          + TIH FC+ ++ 
Sbjct: 78  IHELRIACVRGVSDDPMH-KDLLAEITDLNKAAADLLAAERQMDEAAIYTIHGFCQRMLA 136

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F     +  + L  +A       
Sbjct: 137 NNAFESGI--LFEQTLVQDEQPLRRQACADFWRR 168


>gi|288871488|ref|ZP_06410194.1| putative DNA helicase II [Clostridium hathewayi DSM 13479]
 gi|288863275|gb|EFC95573.1| putative DNA helicase II [Clostridium hathewayi DSM 13479]
          Length = 854

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 62/212 (29%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            ++   +   R+  V A  G+GKT  LV     LL      P+ L  +T T  AA EM  
Sbjct: 486 QQEAAVTAIGRAINVVAGPGTGKTKTLVSHAFHLLKERGVKPTELTAVTFTNQAAREMHS 545

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+   +     +                                      +++ T H+ C
Sbjct: 546 RLEGQLGGKRFV------------------------------------SRMRIGTFHSIC 569

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEA---------KKSTLASIMLDN------- 184
             ++++  +E      F +ADE + K   EE           +  L  I  +        
Sbjct: 570 YDLLKKSGME------FTLADEVEMKDTAEEIIAEMQLNLSARQFLRQISAEKCGLEKQT 623

Query: 185 ---NEELKKAFYEILEISNDEDIETLISDIIS 213
               +E  +A+ + L+     D + L+ + + 
Sbjct: 624 ETCPKEAYQAYQKRLKEQGILDFDDLLLETLH 655


>gi|237752329|ref|ZP_04582809.1| helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375818|gb|EEO25909.1| helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 897

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW---SHLSDEILSAEITKIQGKKPNKSD 113
           +  A PS +L LT TK AA EM  R+L  +       +  D I   E+  I  K   + D
Sbjct: 1   MQGAKPSNILTLTFTKKAAKEMEERILHNLKELYYNKNNRDYIKEFELISI-NKTLQEPD 59

Query: 114 MSKARHLLITILETPGG--LKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
                + + ++        LK+ TI AF + I++ F     +   F + +E+
Sbjct: 60  WKNIENKINSVYHEFLRQDLKITTIDAFFQKILKNFCWYVGVEYDFELQEED 111


>gi|254388944|ref|ZP_05004175.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702662|gb|EDY48474.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 470

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 41/158 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +         V A  G+GKT  LV+ V   + A A P+ +L LT ++ AA E+  R
Sbjct: 67  AQRAVVDHRGGPLLVLAGPGTGKTTTLVEAVAERVAAGADPARVLVLTFSRKAAVELRDR 126

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +                                           G +  T H+FC 
Sbjct: 127 MALRLGGAR---------------------------------------GPQATTFHSFCY 147

Query: 142 AIMQQFPLEANITSH-FAIADEEQSKKLIEEAKKSTLA 178
           A+++    +A++ +    +    +   ++ E     L 
Sbjct: 148 ALVRAH-QDADLFAETLRLLSGPEQDVMVRELLTGQLD 184


>gi|145611136|ref|XP_368614.2| hypothetical protein MGG_00630 [Magnaporthe oryzae 70-15]
 gi|145018457|gb|EDK02736.1| hypothetical protein MGG_00630 [Magnaporthe oryzae 70-15]
          Length = 819

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 38/157 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
             +++   S    +  + A  GSGKTH L  RV+  + +    P  ++  T T  AA EM
Sbjct: 16  NDAQRRAVSSGATTVAILAGPGSGKTHTLASRVVWQVDVVGYRPQDVVVATFTVKAAREM 75

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +++                             + R +++            T H+
Sbjct: 76  GERICKVLGP--------------------------ERGRKVVL-----------GTFHS 98

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                +  +  +  +   F IAD+  S+ +I    K 
Sbjct: 99  ISRRYLAAYGKKIGLDQKFGIADDSDSRAIITRICKR 135


>gi|257471507|ref|ZP_05635506.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
          Length = 1174

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 32/213 (15%)

Query: 35  WVSANAGSGKTHILV-------------QRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + A+AG+GKT  +V             +   + LL       +L +T T  A  E+  R
Sbjct: 22  LIEASAGTGKTFTIVLLYLRLLLGIGEKKIYKKKLL----VHEILVVTFTNKAKEELYIR 77

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + I           ++  +  Q       D+++A ++L           + TIH+FC+
Sbjct: 78  IKDGIQNMYLTCINKTTSN-SSFQFFLKEIHDINEAIYVLKRAQNDMNSSSIYTIHSFCQ 136

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            I+Q      N      I + E +  L  +A +           E++ K  Y+       
Sbjct: 137 HILQLHTFHFNNIFEEKIIENEDN--LYLQATQDFWRRFFYTLPEDIIKIIYQDY----- 189

Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +  + L+  I       K  F+  S  +  KI+
Sbjct: 190 KSPDHLLKTI-------KPFFYIKSINFPTKIL 215


>gi|120402806|ref|YP_952635.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955624|gb|ABM12629.1| ATP-dependent DNA helicase, Rep family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 710

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L+     EQ  A   P     V A AG+GKT  + +R+  L+ A    P  +L +T T+ 
Sbjct: 14  LLGDLDDEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFTQR 73

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAE 100
           AA EM  R+  +    +  S   + A+
Sbjct: 74  AAGEMRGRLRALGGDEAGASTAAVQAQ 100


>gi|296104480|ref|YP_003614626.1| exonuclease V subunit beta [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058939|gb|ADF63677.1| exonuclease V subunit beta [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 1180

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGQAAFPRPLSVEELLVVTFTEAATAELRGRIRAN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           +D  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYASLLEEIADKQQAAQWLLLAERQMDEASVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +   F +   E   +L  +A              E+ +A + +      +  E
Sbjct: 139 LNAFESGM--LFELQLIEDESELRYQACADFWRRHCYPLQREIAEAVHALW-----KGPE 191

Query: 206 TLISDI 211
            L+  I
Sbjct: 192 ELLRAI 197


>gi|300694593|ref|YP_003750566.1| DNA helicase, DNA helicase uvrd/rep type domain [Ralstonia
           solanacearum PSI07]
 gi|299076630|emb|CBJ35968.1| putative DNA helicase, DNA helicase UvrD/REP type domain [Ralstonia
           solanacearum PSI07]
          Length = 600

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 69/215 (32%), Gaps = 63/215 (29%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAA 76
           ++   EQ        S ++ A  GSGKT  L  ++   L         ++ LT+T  AA 
Sbjct: 8   TELNDEQSQVVREENSVFLVACPGSGKTRTLTYKIAYELSRLQSKRQFIVALTYTNRAAD 67

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ E+    S                                        L   TI
Sbjct: 68  EIHERIEELGVDTSQ---------------------------------------LWTGTI 88

Query: 137 HAFCE-AIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKS------------------T 176
           H+FC   I++ +   E  +   F I D  + +KL+EE  ++                   
Sbjct: 89  HSFCLEWILKPYAIYEPALARGFRIMDSHEQEKLLEELCRAQRGITYWDCEYYFTDQGYV 148

Query: 177 LASIMLDNNEELKKAFYEILEISNDE---DIETLI 208
           L     + +E L   F +      D    D E ++
Sbjct: 149 LGCTDQNKHERLHAVFAQYFRYLADNRQIDFEQIL 183


>gi|319649937|ref|ZP_08004087.1| YjcD protein [Bacillus sp. 2_A_57_CT2]
 gi|317398375|gb|EFV79063.1| YjcD protein [Bacillus sp. 2_A_57_CT2]
          Length = 772

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 41/143 (28%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAH 61
           Y  S  +    +D     + +    S       V A AGSGKT +L  R   +L   +  
Sbjct: 133 YLKSLSQAGVFLD-----EQQAAAVSHIDGPLLVLAGAGSGKTRVLTTRTAFMLREKDID 187

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P +++ +T T  AAAEM  R+ +     S    +I+S                       
Sbjct: 188 PKSIMLVTFTAKAAAEMKERLTQYPGMDSRKVRQIVS----------------------- 224

Query: 122 ITILETPGGLKVQTIHAFCEAIM 144
                        T H+    I+
Sbjct: 225 ------------GTFHSLFYRIL 235


>gi|298244729|ref|ZP_06968535.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297552210|gb|EFH86075.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 959

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 34/153 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + +Q + S       V A  GSGKTH +    + LLL+  A PS L+  T+T+ AA EM
Sbjct: 15  NEEQQAIISHREGPLLVIAGPGSGKTHSITLLAMNLLLSGEATPSQLILCTYTEKAALEM 74

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+  I  A  + +D                                    LK+ TIH 
Sbjct: 75  QDRLAGIAKAVDYRTD---------------------------------LSQLKIDTIHG 101

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            C  ++++      + + + I ++     LI E
Sbjct: 102 LCNRLVEEHLHHTPLGNGYEILNQFTQPLLIFE 134


>gi|309799179|ref|ZP_07693429.1| DNA-dependent ATPase I and helicase II [Streptococcus infantis
           SK1302]
 gi|308117196|gb|EFO54622.1| DNA-dependent ATPase I and helicase II [Streptococcus infantis
           SK1302]
          Length = 338

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 72/212 (33%), Gaps = 53/212 (25%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
              +Q  A D       V A  G+GKT IL +RV  +L   + +P  ++CLT+T+A A+E
Sbjct: 17  LNEQQKKAVDTVEGPVMVIAGPGTGKTQILSRRVANILTNYHTNPEEIVCLTYTEAGASE 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+  +I                                            ++V TIH
Sbjct: 77  MLDRLEGLIGEEGR--------------------------------------NVRVSTIH 98

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++ +                E+ K +   AK   L  I+ ++  E    +    E
Sbjct: 99  SFCSELILENSDLFG----------EEPKVITAAAKYEILKDIIDEHVTEESPFYKNSGE 148

Query: 198 ISNDEDIETLISDIIS-NRTALKLIFFFFSYL 228
             + +  E L+       R  L    F     
Sbjct: 149 RYSFK--EQLLDLFTKMKREDLDKDDFEKEID 178


>gi|237751626|ref|ZP_04582106.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229372992|gb|EEO23383.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 677

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 11/115 (9%)

Query: 20  TKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
              EQ  A + P     V A+AG+GKT  +V R+  L+  +  P  +L LT T  A+ EM
Sbjct: 3   LNEEQYKACNAPLGHNLVIASAGTGKTSTIVGRIATLIERSIKPHEILLLTFTNKASHEM 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
             RV +I        D+ L+ +I            + + + +    L+ P  LK+
Sbjct: 63  IERVGKIF-------DKTLANKIEAGTFHSVAYRYLKEHKKI---TLKQPRELKI 107


>gi|466973|gb|AAA17159.1| uvrD [Mycobacterium leprae]
          Length = 457

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 36/145 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++     P     V A AG+GKT  +  R+  L+ A       +L +T T+ AAAEM
Sbjct: 26  DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAHLVGAGHVATGQVLAVTFTQRAAAEM 85

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                                 +A    +  +   G ++V T HA
Sbjct: 86  RSRL---------------------------------RALGAAVQAVSDFGVVRVLTFHA 112

Query: 139 FCEAIMQQF-PLEANITSHFAIADE 162
                ++ F P      + + + D 
Sbjct: 113 AAHRQLRYFWPRVIG-DTGWQLLDS 136


>gi|298241785|ref|ZP_06965592.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297554839|gb|EFH88703.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 765

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 33/128 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +    +     A   A AG+GKT ILVQR++RL+      P  +LC+T T+AAA EM
Sbjct: 27  NPQQAAAIAHTDGPAAFIAAAGTGKTAILVQRLVRLIADVGVAPEAILCVTFTRAAAEEM 86

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R L+ +                             KAR LLI  L+    L+V T H 
Sbjct: 87  EKRALKSL-----------------------------KARGLLIKDLK---ALRVVTFHG 114

Query: 139 FCEAIMQQ 146
               ++++
Sbjct: 115 LGHVMLRE 122


>gi|220904252|ref|YP_002479564.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868551|gb|ACL48886.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 1173

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 36/163 (22%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS------------------TLLCLTHTKAAAAE 77
           V A+AGSGKT+ L +  L+ L+A   P                    +L +T T AAA E
Sbjct: 41  VKASAGSGKTYELTRCFLQRLVACGAPGTAASPACALSSSGPCGWGDILAVTFTNAAATE 100

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  RV+  + + +              Q  +  + D + A   +  I+     L ++TI 
Sbjct: 101 MRERVIRQLKSAALG------------QPMQGLELDSASAGRWVDAIMRDMSALNIRTID 148

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSK------KLIEEAKK 174
           +    I++   L+  +   F      +         L+E+A +
Sbjct: 149 SLLHLIVRAAALDLRLHPDFQPVFATEEALTPYLDLLLEKAWQ 191


>gi|218666396|ref|YP_002425609.1| ATP-dependent DNA helicase, UvrD/REP family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518609|gb|ACK79195.1| ATP-dependent DNA helicase, UvrD/REP family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 745

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 42/134 (31%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I   +++  +AS     A V A AG+GKT  ++ R L L+ +    S +L LT ++ AA
Sbjct: 1   MIILDENQHRVASHKEGPALVLAGAGAGKTASIIGRTLELVESGVPSSRILLLTFSRKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV-- 133
            EM  R +                                             GG  +  
Sbjct: 61  REMRERAMMAFGE----------------------------------------GGATIQA 80

Query: 134 QTIHAFCEAIMQQF 147
            T HAFC  I +Q+
Sbjct: 81  STFHAFCGRIFRQY 94


>gi|320008692|gb|ADW03542.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 1156

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 41/166 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++D       ++ +         V A  G+GKT  LV+ V R +     P+ +L LT ++
Sbjct: 32  SVDPPLLDAPQRAVVDHRDGPLLVLAGPGTGKTTTLVEAVARRVAGGTDPARILVLTFSR 91

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R+   +                                           G +
Sbjct: 92  KAAVELRDRMAARLGGTR---------------------------------------GPQ 112

Query: 133 VQTIHAFCEAIMQQFPLEANITSHF-AIADEEQSKKLIEEAKKSTL 177
             T H++C A+++    +A++ +    +    +    + E     L
Sbjct: 113 ATTFHSYCYALVRAH-QDADLFADPLRLLSGPEQDVTVRELLAGQL 157


>gi|312134286|ref|YP_004001624.1| uvrd/rep helicase [Caldicellulosiruptor owensensis OL]
 gi|311774337|gb|ADQ03824.1| UvrD/REP helicase [Caldicellulosiruptor owensensis OL]
          Length = 955

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 32/146 (21%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
              +A+AG GKT  +    + L+      P+ ++C+T+T+ AA E+ +R++         
Sbjct: 9   IIYNASAGCGKTENIANLYIDLISHKKILPTEIVCITYTEKAARELKNRIISK------- 61

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                 +K R L +  +       ++TIH+FC  +++ +   A 
Sbjct: 62  ----------------------AKQRGLDLLTISKIQNSHIKTIHSFCIYLLRFYWAWAK 99

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLA 178
           + ++F I  E    +LI +     L+
Sbjct: 100 VDANFKIVPEID--RLILKLIDDYLS 123


>gi|297626188|ref|YP_003687951.1| DNA helicase [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
 gi|296921953|emb|CBL56513.1| DNA helicase [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
          Length = 718

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEM 78
           K ++ +A D      V A AG+GKT  +  R+   +L+ A  P ++L +T T  AA EM
Sbjct: 27 DKDQRAVAVDVAGPLAVLAGAGTGKTRAITHRIAHAVLSGAQAPDSILAVTFTTRAAGEM 86

Query: 79 SHRVLEI 85
            R+  +
Sbjct: 87 RARLAAL 93


>gi|288947725|ref|YP_003445108.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
            180]
 gi|288898241|gb|ADC64076.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
            180]
          Length = 1715

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 81/194 (41%), Gaps = 25/194 (12%)

Query: 13   TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
             +DL +  + + ++A+ P  S  V A  GSGKT ++V RV  LL    AHP  ++ L + 
Sbjct: 1080 LVDLRNPAQ-QAIVAAPPEGSLLVLAGPGSGKTRVIVHRVAWLLRQGMAHPQDIMVLAYN 1138

Query: 72   KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            ++A +E+ HR+      W+ +  E +   +  + G       M          LE    +
Sbjct: 1139 RSAVSEIRHRL------WALVGPEAVGVSVQTVHGLA-----MRLTGTSYAVALERGEKI 1187

Query: 132  KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
               T       +++Q            +++  +  +L+     + L  +++D  +++   
Sbjct: 1188 DFTT-------VLRQATARLKQAEREDVSESTERDRLL-----AGLRFLLIDEYQDINGE 1235

Query: 192  FYEILEISNDEDIE 205
             Y+++       ++
Sbjct: 1236 HYDLISAVAGRALD 1249


>gi|116515208|ref|YP_802837.1| hypothetical protein BCc_282 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257062|gb|ABJ90744.1| exodeoxyribonuclease V, b chain [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 1167

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA---------NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  ++   LRL+L                +L +T T+ A  E+  R+ + 
Sbjct: 18  LIEASAGTGKTFSIIIFYLRLILNIGIKKSYSSPIPIKKILIVTFTETAKNELKERLYKK 77

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I    ++S    +  +  ++  K    D  K   LL    +    + + TIH+F   I+
Sbjct: 78  ICQLYYMSINK-NYYVKDLKDFKKEIKDFKKISKLLKKAKKNIDQINIYTIHSFFRKIL 135


>gi|285016846|ref|YP_003374557.1| exodeoxyribonuclease V subunit beta [Xanthomonas albilineans GPE
           PC73]
 gi|283472064|emb|CBA14571.1| probable exodeoxyribonuclease v beta chain protein [Xanthomonas
           albilineans]
          Length = 1221

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L     RL++        +L +T T+AA  E+  R+ E +T  + L 
Sbjct: 20  LIEASAGTGKTFTLATLFTRLVVERGLRLGQILAVTFTEAATQELRRRIRERLTLAATLV 79

Query: 94  DEILSAEITKIQGKKPNKSDMSKA----------------RHLLITILETPGGLKVQTIH 137
            E  +A        +     +++                 R  L    E      + TIH
Sbjct: 80  PETDAAAWQMPASAESPDVSLTRQLLQAHLAAAQETPAALRRRLQQAAEDIDLAAIFTIH 139

Query: 138 AFCEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            FC   ++++ LE+    +   +  +E  ++L+ +       +  +D
Sbjct: 140 GFCARALREYALESGQPFATPQLLTDE--RELLRDVAADLWRAHAVD 184


>gi|296168414|ref|ZP_06850294.1| exodeoxyribonuclease V beta subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896708|gb|EFG76343.1| exodeoxyribonuclease V beta subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 1103

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 5/169 (2%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITAWSHL 92
            + A+AG+GKT  L   V R +   A     +L +T  +AA+ E+  RV  +++ A +  
Sbjct: 22  VLQASAGTGKTFALAGLVTRYVAEGAATLDQMLLITFGRAASQELRERVRGQMVDAVAAF 81

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
            D   + E+        +    S+ R  L   L       + T H FC+ +++   +  +
Sbjct: 82  DDGAGANELVAHLLDGTDAERASR-RQRLRDALAGFDAATIATTHQFCQLVLKSLGVAGD 140

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
             ++  + +     +LI E       +      ++   A+ + L ++ +
Sbjct: 141 TAANVTLLESLD--ELIVEIVDDLYLAHFGRERDDPALAYRDALRLARE 187


>gi|254452740|ref|ZP_05066177.1| exodeoxyribonuclease V, beta subunit [Octadecabacter antarcticus
           238]
 gi|198267146|gb|EDY91416.1| exodeoxyribonuclease V, beta subunit [Octadecabacter antarcticus
           238]
          Length = 1051

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 33/152 (21%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A AGSGKT  +   + + +  N   P  +L +T T+AAAAE+  R+   + A   + 
Sbjct: 4   IVPAGAGSGKTFRIKSDLTKWVKDNLVGPDRILAVTFTEAAAAELRGRIRASLLAEGMVE 63

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
             +   +                                V TIH     I+ +    A  
Sbjct: 64  AALAVEQ------------------------------AYVSTIHGLGLRILSEHAFAAGA 93

Query: 154 TSHFAIADEEQSKKLIEEAK--KSTLASIMLD 183
           +       E +   LI +A     +L ++  D
Sbjct: 94  SPQPRALAEAERDLLIRQAMAHAESLEAVKAD 125


>gi|19704484|ref|NP_604046.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714756|gb|AAL95345.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1056

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 46/227 (20%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
           ++  + A+AG+GKT+ L    +  L             +L +T T+ A AE+   +L  +
Sbjct: 5   KNLVLKASAGTGKTYRLSLEYIIALCKKGDIEPIDYKNILVMTFTRKATAEIKEGILNKL 64

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-------------------- 126
           + +  + +   +++ + I+    +K   +K +   + ++E                    
Sbjct: 65  SEFMEIYEISKNSKFSVIEAISNSKLIDNKKKSNYLNLIESIKNIEPNLVIDNNFLENLS 124

Query: 127 --------TPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAKKST 176
                       LK+ TI AF   I +   +  N+     + + DEE +    ++  ++ 
Sbjct: 125 KVNKEIIKNKEKLKIYTIDAFFNIIFKN--IVTNLMKIKSYTMLDEEDNFSYYKKVLENI 182

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
                  NNE+L   F      +++++I+    +I  +IS+R    L
Sbjct: 183 F------NNEKLFNDFKNFFTENSEKNIDNYISIIQRLISSRWKYIL 223


>gi|319943538|ref|ZP_08017820.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Lautropia
           mirabilis ATCC 51599]
 gi|319743353|gb|EFV95758.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Lautropia
           mirabilis ATCC 51599]
          Length = 1490

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 94/322 (29%), Gaps = 114/322 (35%)

Query: 21  KSEQLLASDPT-----RSAWVSANAGSGKTHILVQRVLRLLLANAH-------------- 61
           ++EQ    +P       S  + A+AG+GKT+ +    LRL+L +                
Sbjct: 30  QTEQPRRVEPLHFPLWGSRLIEASAGTGKTYTIAALYLRLVLGHGERGTVDLDAAYPPDV 89

Query: 62  ----------------------PSTLLCLTHTKAAAAEMSHRVLEIITAWS---HLSDEI 96
                                 P  +L +T T+AA  E+  R+   +   +     S E 
Sbjct: 90  DMGFLEGAKPPQETTAFREALTPPKILVVTFTEAATLELRDRIRARLAEAAAFFRASAEA 149

Query: 97  LSAE-----------------------------------------ITKIQGKKPNKSDMS 115
           + AE                                         +  ++   P      
Sbjct: 150 VEAETCLDAMEPGSVPDQDVVGGQPAPDAASAGDDLAVLPKADPFLQGLRDAYPASQWSE 209

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKK 174
           +A H L    E      + TIH +C  ++++   ++  +   F       + +L+ EA +
Sbjct: 210 RA-HTLQLAAEWMDESAISTIHGWCNRMLREHAFDSRGL---FNQTLSTDTSELLAEACR 265

Query: 175 S---------------TLASIMLDNNE---ELKKAFYEI--LEISNDEDIETLISDIISN 214
                            L     D +    E++    ++  L        E +       
Sbjct: 266 DYWRNFCQGLPLEAARVLQGWWADPDALQKEVQSLLSDLDALSGEGRSPAEAIGEAQQQR 325

Query: 215 RTALKLIFFFFSYLWRRKIIEK 236
           R  L+ +       WR   I++
Sbjct: 326 REQLQAL----KAPWREGWIDE 343


>gi|302554000|ref|ZP_07306342.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
 gi|302471618|gb|EFL34711.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
          Length = 760

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ++ D + +     ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 35  HSTLFPQVPDSADAVLEGLDPEQREVATALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 94

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
            HPS++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 95  LHPSSVLAVTFTNRAAGEMRGRLRQ-LGAAGVQARTFHSAALRQLQYFWPKA 145


>gi|164687610|ref|ZP_02211638.1| hypothetical protein CLOBAR_01251 [Clostridium bartlettii DSM
           16795]
 gi|164603384|gb|EDQ96849.1| hypothetical protein CLOBAR_01251 [Clostridium bartlettii DSM
           16795]
          Length = 683

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 46/221 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
           E+   ID +++ + E +   D      V A  GSGKT ++  R++ +++     P+ +L 
Sbjct: 2   ENMINIDKLNENQQEAVKHVD--GPCMVLAGPGSGKTRVITYRIVNMVMNEGIPPTRILA 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           ++ TKA++ EM +R L I   +                                      
Sbjct: 60  ISFTKASSIEMKNRALSICNDF-------------------------------------R 82

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              +   T HA    I+++F     +  + +I DE+  +  ++   KS L     +++E 
Sbjct: 83  MNKVTFGTFHAVFFRILRKF---DGVNLN-SILDEKTKRIALKGILKS-LNVENAEDDEL 137

Query: 188 LKKAFYEILEISNDE-DIETLISDIISNRTALKLIFFFFSY 227
           + +   EI  + N+  D     S++++    +     + +Y
Sbjct: 138 IGQVINEISYVKNELMDKADFQSEVLTKDEFVNTYNMYENY 178


>gi|294341124|emb|CAZ89525.1| ATP-dependent DNA helicase [Thiomonas sp. 3As]
          Length = 669

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 36/153 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++   +  +    V A AGSGKT ++  ++ RLL A   P  +  +T T  A     
Sbjct: 3   NAAQERAVAHLSGPCLVIAGAGSGKTRVITHKIGRLLRAGLEPDQIAAITFTNKA----- 57

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                                           ++M +    L+        L + T HA 
Sbjct: 58  -------------------------------AAEMRERAAQLVDKRGVASKLAISTFHAL 86

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
              ++++      +   F+I   +    L+ +A
Sbjct: 87  GVRMLRESGQALGLKPKFSILAADDVTGLLRDA 119


>gi|150389970|ref|YP_001320019.1| UvrD/REP helicase [Alkaliphilus metalliredigens QYMF]
 gi|149949832|gb|ABR48360.1| UvrD/REP helicase [Alkaliphilus metalliredigens QYMF]
          Length = 678

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 44/187 (23%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +    +Q+ A         V A  GSGKT ++ +RV  L+ + + +P  +L +T TKAAA
Sbjct: 7   ALLNDQQIEAIKHLNGPCMVYAGPGSGKTRVITERVSYLINVGHVNPREILVITFTKAAA 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R                         K  +  D  K +                T
Sbjct: 67  EEMKNR-----------------------FAKDESVEDSKKRQVTF------------GT 91

Query: 136 IHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+    +++ +            I +E +   +I+   + TL     D  E +K    +
Sbjct: 92  FHSIFFRMLKSYCGYNLE-----NILNEGEKFNVIKNIVR-TLDVGNHDEEELIKDLILD 145

Query: 195 ILEISND 201
           I +  N+
Sbjct: 146 IGKWKNN 152


>gi|311067675|ref|YP_003972598.1| putative ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
 gi|310868192|gb|ADP31667.1| putative ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
          Length = 761

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 39/137 (28%), Gaps = 36/137 (26%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           +H      I     +    ++      V A AGSGKT +L  R   ++      P  +L 
Sbjct: 127 QHLSLFPTIGLNTDQLQAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGVSPENMLL 186

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  A AEM  R+                                           + 
Sbjct: 187 VTFTTKAVAEMKERMANE-----------------------------------YGLAPQH 211

Query: 128 PGGLKVQTIHAFCEAIM 144
            G L   T H+    I+
Sbjct: 212 VGRLVTGTFHSLFYKIL 228


>gi|207091890|ref|ZP_03239677.1| DNA helicase II (uvrD) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 681

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 51/201 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           ++++  S       + A AGSGKT  L  R+  L+ +        L LT T  A+ EM  
Sbjct: 14  AQKIATSHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSKNTLTLTFTNKASKEMQE 73

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R L+++   + +   +                                      T H F 
Sbjct: 74  RALKLLKNQALIPPLL-------------------------------------CTFHRFG 96

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLDNNE--E 187
              ++Q          F++ D ++ K L ++ K           K+ +  + + ++E  +
Sbjct: 97  LLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISSFRASISQIKNGMMDLSMQDSECHK 156

Query: 188 LKKAFYEILEISNDEDIETLI 208
             + +   L+  N  D + L+
Sbjct: 157 AYELYQNALKKDNLVDFDDLL 177


>gi|83815933|ref|YP_446416.1| DNA helicase II [Salinibacter ruber DSM 13855]
 gi|83757327|gb|ABC45440.1| DNA helicase II [Salinibacter ruber DSM 13855]
          Length = 1084

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 47/217 (21%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69
           S   D       ++   +       V A  G+GKT +LV R   L+      PS L+ +T
Sbjct: 3   SRPADWPDLNPDQRAAVTASMDPQLVVAGPGTGKTRVLVCRAAHLIEHEAVTPSRLVLVT 62

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+ AA +++ R+  ++   +                                       
Sbjct: 63  FTRRAAQQLTSRLAALVGPEAQH------------------------------------- 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE---EAKKSTLASIMLDNNE 186
            ++  TIH FC   ++     A +   F + D+  +    +   EA +    +  L +  
Sbjct: 86  -VRAGTIHHFCYKTLRAHSAPAGVPDDFIVVDDTVTDAFWQRWYEAHERWCEANDLHSYR 144

Query: 187 ELKKAFYEI---LEISNDEDIETLIS--DIISNRTAL 218
           ++K     I   ++  +    E L +  +++ +R AL
Sbjct: 145 QVKTHVSRIKLGIDTVSGRLTEGLRAYGEMLGDRGAL 181


>gi|153803771|ref|ZP_01958357.1| ATP-dependent DNA helicase, UvrD/Rep family [Vibrio cholerae MZO-3]
 gi|124120693|gb|EAY39436.1| ATP-dependent DNA helicase, UvrD/Rep family [Vibrio cholerae MZO-3]
          Length = 267

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 34/191 (17%)

Query: 44  KTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT +L  R   L++  N  P  +L LT T  A +EM  R+   +      + +       
Sbjct: 55  KTKVLATRYAWLIMEKNLKPEEILALTFTNKAVSEMYSRIYNFLLEEQKDNPKA------ 108

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                 L+     ++ T+ +F   + +       I+  F+ +D+
Sbjct: 109 -------------------QEALKLFHKARISTLDSFSAQVGRIASRRYGISPDFS-SDD 148

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI-ETLISDIISNRTALKLI 221
           +  K+L  ++    +   + D       A   +LE +  + I E + ++I+   + +   
Sbjct: 149 QGIKELARDSALRFVLDHLNDP------AIQRLLEENKIKKIAEDIFAEIVLEYSPISSP 202

Query: 222 FFFFSYLWRRK 232
             F   L  +K
Sbjct: 203 LDFNEELELQK 213


>gi|229113198|ref|ZP_04242693.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
 gi|228670224|gb|EEL25572.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
          Length = 719

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 38/142 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            +++ + E +   D  +     A AGSGKT +L  RV  L+ +AN   S +L LT T+ A
Sbjct: 81  FLNENQIEAVRTID--KPVLAIAAAGSGKTRVLASRVGYLMCVANVDASRILVLTFTRKA 138

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  +      + + I++                                    
Sbjct: 139 ANEMKQRIAGLPGISKSVLNIIVA-----------------------------------G 163

Query: 135 TIHAFCEAIMQQFPLEANITSH 156
           T H+    I++    +  I S+
Sbjct: 164 TFHSVFLRILRSRGYDQRILSN 185


>gi|163815247|ref|ZP_02206624.1| hypothetical protein COPEUT_01407 [Coprococcus eutactus ATCC 27759]
 gi|158449442|gb|EDP26437.1| hypothetical protein COPEUT_01407 [Coprococcus eutactus ATCC 27759]
          Length = 670

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 67/239 (28%), Gaps = 79/239 (33%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           L+   +S+++          + A  GSGKT +L+ R+  ++      P  +L +T TKAA
Sbjct: 3   LVEFNESQKIAIEHGGGPMLLLAGPGSGKTTVLIHRIKYMIQHHGIRPEHILVITFTKAA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R                                          +    G +   
Sbjct: 63  ANEMKIR---------------------------------------FRNLCPEVGSVTFG 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQ--------------SKKLIEEAKKSTLASI 180
           T H+    I++             I  + +                   E+  ++ L  I
Sbjct: 84  TFHSVFFWILRNAYNYTGTD----IITDAEKYGAVRDSIERHGFRYDSQEDFARNVLGEI 139

Query: 181 M------------------LDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTAL 218
                               D+   +   +   L      D + ++    +++S R  +
Sbjct: 140 GCVKSEMCDLKSYESTTMKTDDFRVVYDDYENFLRYRGKIDFDDMLVFTYELLSQRQDI 198


>gi|324323717|gb|ADY24761.1| helicase, UvrD/Rep family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 719

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 38/142 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            +++ + E +   D  +     A AGSGKT +L  RV  L+ +AN   S +L LT T+ A
Sbjct: 81  FLNENQIEAVRTID--KPVLAIAAAGSGKTRVLASRVGYLMCVANVDASRILVLTFTRKA 138

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  +      + + I++                                    
Sbjct: 139 ANEMKQRIAGLPGISKSVLNIIVA-----------------------------------G 163

Query: 135 TIHAFCEAIMQQFPLEANITSH 156
           T H+    I++    +  I S+
Sbjct: 164 TFHSVFLRILRSRGYDQRILSN 185


>gi|300724824|ref|YP_003714149.1| exonuclease V subunit beta [Xenorhabdus nematophila ATCC 19061]
 gi|297631366|emb|CBJ92061.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Xenorhabdus nematophila
           ATCC 19061]
          Length = 1238

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 10/143 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL            +   +L +T T AA  E+  R+ E 
Sbjct: 32  LIEASAGTGKTYTIGLLYLRLLLGLGGSAAFSRPLNVEEILVVTFTTAATDELRGRIREN 91

Query: 86  ITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I           +A    + Q       D   A H L+          + TIH FC+ ++
Sbjct: 92  IHQLRLACIRAETAASDPVYQQLLAEIPDRESAAHWLLIAERQMDEAAIYTIHGFCQRML 151

Query: 145 QQFPLEANITSHFAIADEEQSKK 167
                E+ +     +  +E   +
Sbjct: 152 INNAFESGVLFDQTLIQDESQLR 174


>gi|71892050|ref|YP_277780.1| exonuclease V [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796156|gb|AAZ40907.1| exonuclease V [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 1187

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 17/187 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ L+   +RLLL   +            +L +T TK+A  E+ HR+ E 
Sbjct: 16  LIEASAGTGKTYTLIIIYIRLLLCLGNRSDFSRPLTVKEILVVTFTKSAVRELRHRIREN 75

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I  +        S              ++  A + L    +      + TIH+FC+ I+ 
Sbjct: 76  IHQFRLDCMRGYSHNFL-FSKLLLQIHNVELAINQLSEAEKKINQASIFTIHSFCQNILN 134

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
              +E N+  +  I D E    L ++A               + +   E  +  N     
Sbjct: 135 HNTIELNMLFNTNIVDNE--TILYQQACTDFWRRNFYSLPLNIARLIQEYWKDPN----- 187

Query: 206 TLISDII 212
           +L++DII
Sbjct: 188 SLLNDII 194


>gi|258650842|ref|YP_003199998.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258554067|gb|ACV77009.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 676

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 46/156 (29%), Gaps = 36/156 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             ++            + A AG+GKT  L  RV  LL        +L LT T+ AA EM 
Sbjct: 11  DDAQLSAVVHGDGPLVILAGAGTGKTRTLTARVASLLDRGVPAERVLLLTFTRRAADEMV 70

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                                       L T  +    L   T HA 
Sbjct: 71  SR------------------------------------AARLCTQPDAGQRLAGGTFHAV 94

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             A++ +      +    ++ D   +  +++  +  
Sbjct: 95  AHAVIGRHTEALGLPPAVSVLDRADATDVMDLLRHD 130


>gi|313906068|ref|ZP_07839420.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
 gi|313469113|gb|EFR64463.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
          Length = 653

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++   +       V A  GSGKT ++  R  +L+     PS++L +T T+AAAA+M  R 
Sbjct: 7  QKKAVAHGDGPMLVLAGPGSGKTAVITGRTAQLIQNGISPSSILVVTFTRAAAAQMKGRF 66

Query: 83 LEIITAWSH 91
          L++    S 
Sbjct: 67 LKMTGREST 75


>gi|261416175|ref|YP_003249858.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372631|gb|ACX75376.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 1094

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 31/167 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           +SA AGSGKT  L   +  L++   A P   +  T T+AAA+E   +    I   +  + 
Sbjct: 7   ISAGAGSGKTFTLTSILADLIVKEKATPDQFILTTFTEAAASEFREKAKAKIYEHTEYAK 66

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E      + T+ +   + +Q++     ++
Sbjct: 67  --------------------------YAEAAEKLDQSMIGTVDSIANSFVQKYWFLLGVS 100

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +  I D+EQ K  I +      + I    +      F E   I+ND
Sbjct: 101 PNQKIIDDEQKKFFISQ----VFSKIATPQDILFLDDFCEQFNIAND 143


>gi|225027668|ref|ZP_03716860.1| hypothetical protein EUBHAL_01927 [Eubacterium hallii DSM 3353]
 gi|224954982|gb|EEG36191.1| hypothetical protein EUBHAL_01927 [Eubacterium hallii DSM 3353]
          Length = 667

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            K ++   +       V A  GSGKT ++  RV  L+     HPS +L +T T+AAA E
Sbjct: 5  FNKEQEEAITHKEGPLMVLAGPGSGKTLVITYRVKWLIENAGVHPSNILVITFTRAAAEE 64

Query: 78 MSHR 81
          M  R
Sbjct: 65 MRKR 68


>gi|325104297|ref|YP_004273951.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
 gi|324973145|gb|ADY52129.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
          Length = 606

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 42/158 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              EQ +A     S  + A  GSGKT  L  ++   L   N++   ++ +T+T  AA E+
Sbjct: 9   LNDEQEVAILEKDSVLLIACPGSGKTRTLTYKIAYELSRLNSNKEFVIAITYTNNAADEI 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV            E+L  + T+                           L + TIH+
Sbjct: 69  KERV------------ELLGVDTTQ---------------------------LWIGTIHS 89

Query: 139 FC-EAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKK 174
           FC E I++ + L +  + + F + +   ++KL+ E  K
Sbjct: 90  FCMEWILKPYHLYSERLKNGFKVCNSFDTEKLLTELCK 127


>gi|12045098|ref|NP_072909.1| UvrD/REP helicase [Mycoplasma genitalium G37]
 gi|1723131|sp|P47486|UVRD_MYCGE RecName: Full=Probable DNA helicase II homolog
 gi|1045935|gb|AAC71464.1| UvrD/REP helicase [Mycoplasma genitalium G37]
 gi|166079083|gb|ABY79701.1| UvrD/REP helicase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 703

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 57/197 (28%)

Query: 21  KSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
             +Q  A    +    V + AG+GKT I+  R   L+      PS +L +T TK AA EM
Sbjct: 2   NEQQKQAISCGKGVNVVYSGAGTGKTTIITNRFAYLVNKEKVDPSRILAITFTKKAAKEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+L++I       D  L+ +                                + T H+
Sbjct: 62  QFRILKLI-------DSSLAEKT------------------------------NIYTFHS 84

Query: 139 FCEAIM-----QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA-SIMLDNNEELKKAF 192
           FC   +     ++F           I D++ S  L E    S L  ++     +  K  F
Sbjct: 85  FCNKFLIQTLKKRF-----------IIDDDISYFLKEFLADSKLDINLAKQIIDNFKNTF 133

Query: 193 YEILEISNDEDIETLIS 209
            +  EI+  +  E LIS
Sbjct: 134 ADF-EINKLDQDERLIS 149


>gi|284031863|ref|YP_003381794.1| exodeoxyribonuclease V subunit beta [Kribbella flavida DSM 17836]
 gi|283811156|gb|ADB32995.1| exodeoxyribonuclease V, beta subunit [Kribbella flavida DSM 17836]
          Length = 1098

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 6/174 (3%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL-EIIT 87
           PT +  + A+AG+GKT+ L   V R +    A    +L +T  +AA+ E+  RV  +++ 
Sbjct: 11  PTGTTVLEASAGTGKTYALAGLVTRYVAEGAARLDEMLLITFGRAASQELRERVRCQLLE 70

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARH--LLITILETPGGLKVQTIHAFCEAIMQ 145
           A   L+          + G   + S    A     L   L T     + T H FC+ +++
Sbjct: 71  AEQALAAPEPWRNDPGLLGHLVDGSAAELAVRHGRLRDALATFDAATIATTHQFCQLVLR 130

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              +  +  +   +   E    L+ E       ++   + E         LE++
Sbjct: 131 SLGVAGDTDAGVTLV--EDLTDLVAEVVDDLYLNLFAGSAEPPPITRATALELA 182


>gi|326383314|ref|ZP_08205002.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198064|gb|EGD55250.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 679

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 20/170 (11%)

Query: 8   QEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           +  +  + + S    EQL A   P     V A AG+GKT  + +R+  L+ +   +P  +
Sbjct: 5   EHQAREVGVTSGLDPEQLEAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVDSGQVNPEQV 64

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T T  AAAEM  R+  +    +   + I +        ++           +   +L
Sbjct: 65  LAVTFTARAAAEMRERLESL--GVAGPGNRIAAQTFHAAAMRQLRYFWPMAMGDMRWELL 122

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           E          H F   ++ +   E  +     +AD +  + L  E + +
Sbjct: 123 E----------HKF--RMVGRVARELGLD----VADRDLLRDLSSEIEWA 156


>gi|302326928|gb|ADL26129.1| helicase, UvrD/REP family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 1059

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 31/167 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           +SA AGSGKT  L   +  L++   A P   +  T T+AAA+E   +    I   +  + 
Sbjct: 7   ISAGAGSGKTFTLTSILADLIVKEKATPDQFILTTFTEAAASEFREKAKAKIYEHTEYAK 66

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                          E      + T+ +   + +Q++     ++
Sbjct: 67  --------------------------YAEAAEKLDQSMIGTVDSIANSFVQKYWFLLGVS 100

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            +  I D+EQ K  I +      + I    +      F E   I+ND
Sbjct: 101 PNQKIIDDEQKKFFISQ----VFSKIATPQDILFLDDFCEQFNIAND 143


>gi|256825724|ref|YP_003149684.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689117|gb|ACV06919.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547]
          Length = 1119

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 29/163 (17%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
           H    + ++ +     T  +  +      +  V A AGSGKT  +  RV+ L+       
Sbjct: 2   HWGAADLADLLGQHRPTPEQAAVIETRDPAQLVVAGAGSGKTETMAARVVWLVANRLVRS 61

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L LT T+ AAAE+S R+   + A                         + +A  L  
Sbjct: 62  DQVLGLTFTRKAAAELSERLAARLDA-------------------------LVRAGVLAA 96

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
             L+ P    V T +A+   I+ +  L   I     +    ++
Sbjct: 97  EELQPPV---VSTYNAWSGGIVAEHGLRLGIEPGARVLSAVEA 136


>gi|227505540|ref|ZP_03935589.1| superfamily I ATP-dependent helicase [Corynebacterium striatum
          ATCC 6940]
 gi|227197837|gb|EEI77885.1| superfamily I ATP-dependent helicase [Corynebacterium striatum
          ATCC 6940]
          Length = 684

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          DL    + ++  A+ P     + A AG+GKT  +  R+  ++      P  +L +T T  
Sbjct: 5  DLSLLDEDQRAAATAPRGPVCILAGAGTGKTRTVTYRIANMVDQGFVSPQRILAVTFTTR 64

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+ ++
Sbjct: 65 AAGEMRDRLNQM 76


>gi|315452533|ref|YP_004072803.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
 gi|315131585|emb|CBY82213.1| putative ATP-dependent DNA helicase [Helicobacter felis ATCC
          49179]
          Length = 658

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 19 QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          Q  SEQ+ A+        + A+AG+GKT  +V R++ LL     P  +L LT T  A+ E
Sbjct: 2  QLNSEQIQATQARLGRNLIIASAGTGKTSTIVGRIIHLLKQGISPHEILLLTFTNKASLE 61

Query: 78 MSHRV 82
          M  R+
Sbjct: 62 MKERL 66


>gi|294631277|ref|ZP_06709837.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292834610|gb|EFF92959.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 518

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 39/126 (30%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++Q +         V A  G+GKT  LV+ V R +     P  +L LT ++ AA E+  R
Sbjct: 41  AQQAVVDHEAGPLLVLAGPGTGKTTTLVESVARRVARGQDPERILVLTFSRKAAVELRDR 100

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +                         +   +   +A                 T H+FC 
Sbjct: 101 M-----------------------ALRTGAAHAPRA----------------TTFHSFCY 121

Query: 142 AIMQQF 147
           A+++  
Sbjct: 122 ALVRAH 127


>gi|307108879|gb|EFN57118.1| hypothetical protein CHLNCDRAFT_51440 [Chlorella variabilis]
          Length = 418

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 20/197 (10%)

Query: 17  ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           + Q   EQ  A + P     V A  GSGKT +LV RV  L+       S LL +T T  A
Sbjct: 4   LHQLNEEQRAAVTAPLGPVRVMAGPGSGKTKVLVARVAELIQTHGISSSKLLAVTFTNKA 63

Query: 75  AAEMSHRVLEIITAWSHL-------SDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           A E+  R+  ++   +           ++ +  + K+   +      +        ++  
Sbjct: 64  AGELQERLSNMLGWKASRVWACTFHRQDLTTDLLRKLVKAEQPDLTAADLTATASQLMHN 123

Query: 128 PGGLKVQ--TIHAFC----EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
              +K    T HA        + ++          F I + E+ ++ +E+        ++
Sbjct: 124 ISTVKCSMTTWHAAMPKARADLFRRGAQRV-----FFIENSEEERRWVEDLVCWFERHML 178

Query: 182 LDNNEELKKAFYEILEI 198
           +D  ++     YE++ +
Sbjct: 179 VDEFQDTNTPQYELVRL 195


>gi|307328514|ref|ZP_07607688.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885782|gb|EFN16794.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 1118

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 39/125 (31%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++ +A        V A  G+GKT  LV+ V R +   A P  LL LT ++ AA E+  R+
Sbjct: 64  QRAVAEHRGGPLLVLAGPGTGKTTTLVEAVARRVREGADPERLLVLTFSRKAAVELRDRM 123

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
              +   S                                         +  T H++C A
Sbjct: 124 AARLGGASAP---------------------------------------RATTFHSYCYA 144

Query: 143 IMQQF 147
           +++  
Sbjct: 145 LVRAH 149


>gi|162451803|ref|YP_001614170.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161162385|emb|CAN93690.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 1089

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 10/125 (8%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++  A     +  + A  G+GKT  L  R+  L+L     P   L +T T+ A
Sbjct: 481 LDALDPEQRAAAEITDGALLLLAGPGTGKTRTLTHRIAHLVLDLGVPPEQCLAITFTRRA 540

Query: 75  AAEMSHRVLEIITA---------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           A E+  R+  ++           +  L   +L           P  +   +   LL   L
Sbjct: 541 ADELRERLGALLGEAGGRVPAMTFHALGLSLLREHAQGAGAAPPAIAGERERTALLAAAL 600

Query: 126 ETPGG 130
             P  
Sbjct: 601 GVPER 605


>gi|221057069|ref|XP_002259672.1| helicase, belonging to UvrD family [Plasmodium knowlesi strain H]
 gi|193809744|emb|CAQ40446.1| helicase, belonging to UvrD family, putative [Plasmodium knowlesi
           strain H]
          Length = 976

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 14/176 (7%)

Query: 16  LISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           L S    EQ+        R+  + A  GSGKT  L  R++R ++      +L+C+T TK 
Sbjct: 41  LYSNLSREQIKIVQIPLNRNLCIIACPGSGKTSTLTARIIRSIIEKKK--SLVCITFTKY 98

Query: 74  AAAEMSHRVLEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLI-TILETPGGL 131
           AA ++  ++ + +     L  D  +S ++   Q  +      SK        +L+T   +
Sbjct: 99  AANDLKEKITKKVNCLIDLFIDTDMSCKLFADQRSRKKCDTSSKIYSKTKLKVLQTV--M 156

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            + TIH+FC  I+ ++         F I     S  +I+ A  +  AS +   + E
Sbjct: 157 FIGTIHSFCRYILFKY------KGPFKILTAFISSNVIKLAFNNFYASFLKGQSAE 206


>gi|319760405|ref|YP_004124343.1| exodeoxyribonuclease V, beta subunit [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039119|gb|ADV33669.1| exodeoxyribonuclease V, beta subunit [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 1204

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 35  WVSANAGSGKTHILVQRVL----------RLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            + A+AG+GKT+ L+   L           +         +L +T T +AA ++  R+ E
Sbjct: 16  LIEASAGTGKTYSLIILYLRLLLNLHSNQSIYSTPLTVKEILVVTFTNSAAYDLRKRIKE 75

Query: 85  IIT--AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            I    W  ++    +   +K+  +  N   +  A  LL    +      + TIH FC+ 
Sbjct: 76  SIQQFRWDCMNKYSNNYIFSKLLLQIRN---IDLAITLLFKAEKEIYEASIFTIHGFCQK 132

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           I+ +  LE NI  H +I ++E    L  +           +    +     E        
Sbjct: 133 ILTENTLELNIPFHTSIIEDE--LTLYRQICFDFWRRHFYELPLNITSFIQEFWN----- 185

Query: 203 DIETLISDI 211
           + E L+ ++
Sbjct: 186 NPEELLQNL 194


>gi|312194644|ref|YP_004014705.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225980|gb|ADP78835.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1243

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 42/210 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
            +  T+ +      P     + A AGSGKT ++  RV+ L+     P  ++L LT T+ A
Sbjct: 87  GVPYTEEQLAAICAPADPGVIVAGAGSGKTSVMAARVVWLVGHEQVPAESILGLTFTRKA 146

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--------- 125
           AAE++ R+   +        ++                        L             
Sbjct: 147 AAELNERIGAALARLRRSGADLPVTAPDLYGAPDLYSEPGLAGGPGLAGGPGLAGGPGSE 206

Query: 126 -----------------------ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                  +  G   V T ++F   ++    L   +         
Sbjct: 207 GVPDLGGLPDRGGAVTPVGGGYADAVGEPAVSTYNSFASRLVADHALRLGLEPDC----- 261

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
                L+  A +  LA+ +        +AF
Sbjct: 262 ----ALLPAAARYQLAANVARGYPGRIEAF 287


>gi|220903308|ref|YP_002478620.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867607|gb|ACL47942.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 1174

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           S+ + + L+A        V A  G+GKT +LV R+  LL     P  LL +T T+ AA E
Sbjct: 522 SEEQYQALVAG--PGPVLVQAGPGAGKTRVLVGRIQHLLDQGTAPHKLLAVTFTRRAANE 579

Query: 78  MSHRVLEIITAWSHLS 93
           M  R+   +     L 
Sbjct: 580 MRQRLAAALPHMQDLP 595


>gi|182684250|ref|YP_001835997.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae
           CGSP14]
 gi|221232029|ref|YP_002511181.1| putative DNA helicase II, UvrD [Streptococcus pneumoniae ATCC
           700669]
 gi|182629584|gb|ACB90532.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae
           CGSP14]
 gi|220674489|emb|CAR69050.1| putative DNA helicase II, UvrD [Streptococcus pneumoniae ATCC
           700669]
          Length = 1334

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 73/208 (35%), Gaps = 52/208 (25%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
            +   +Q  A D       V A  G+GKT IL +RV  +L   +     ++CLT+T+A A
Sbjct: 15  DKLNKQQKKAVDTVEGPVMVIAGPGTGKTQILSRRVANILTNYHTSSEEIVCLTYTEAGA 74

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +EM  R+ ++I                                            ++V T
Sbjct: 75  SEMLDRLEKLIGEEGR--------------------------------------KVRVST 96

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM---------LDNNE 186
           IHAFC  ++ +   E        I       ++++E     +                 +
Sbjct: 97  IHAFCSELILRNS-EI-FGGQPKIISTAAKYEILKEIMDEYVIEGNPLYKNSGKRYSAKD 154

Query: 187 ELKKAFYEILEIS-NDEDIETLISDIIS 213
           +L + FY++   + N ED E  I +   
Sbjct: 155 QLLELFYKMKRENLNKEDFEKEIDEYFK 182


>gi|238918750|ref|YP_002932264.1| exonuclease V subunit beta [Edwardsiella ictaluri 93-146]
 gi|238868318|gb|ACR68029.1| exodeoxyribonuclease V, beta subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 1199

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL----ANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  L    LRLLL     NA+P       +L +T T+AA  E+  R+   
Sbjct: 32  LIEASAGTGKTFTLAALYLRLLLGLGEENAYPRPLAVEEILVVTFTEAATEELRGRIRSN 91

Query: 86  ITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I A   + L  E     +T +  +  +++  +                 + TIH FC+ +
Sbjct: 92  IHALRLACLRGESDHPLLTDLLAQIADQALAASLLLAAER---QMDEAAIYTIHGFCQRM 148

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +     E+ +     +  +E    L  +A            + +L +A  ++        
Sbjct: 149 LSHNAFESGVLFQQTLLQDE--LPLRRQACADFWRRHCYPLSADLAEAVSQLWS-----G 201

Query: 204 IETLISDI 211
            E L++++
Sbjct: 202 PEALLAEL 209


>gi|148989180|ref|ZP_01820570.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
 gi|147925403|gb|EDK76481.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
          Length = 141

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 19/124 (15%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGIEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+ + I+     +D                  D+   +HL   + + P    + T+ +F
Sbjct: 89  ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129

Query: 140 CEAI 143
            + I
Sbjct: 130 TQKI 133


>gi|116620812|ref|YP_822968.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
 gi|116223974|gb|ABJ82683.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
          Length = 749

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 27/162 (16%)

Query: 22  SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEM 78
            + L+   P  S   V A AG+GKT ++++RV  LL  +     + +  +T T+ A  EM
Sbjct: 35  EQWLIEHAPQESHLQVQAGAGTGKTAVMIRRVDFLLHSVDGLALNDIAMITFTRDATHEM 94

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+++ +     +S                        +   I  LE    L + TIH+
Sbjct: 95  RSRLMDHLKTRHGVSG-----------------------KAWYIDWLEQFPALNISTIHS 131

Query: 139 FCEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLAS 179
               ++Q    E  +   F + A  ++ K++IE+   + +++
Sbjct: 132 LARRLLQSVCAEIGLGRSFRLNAFRQEKKRIIEDVLAAQISA 173


>gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 893

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 43/180 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             S++ +    T    V A+ G GKTHIL +RV +  L       +LCLT T  AA EM 
Sbjct: 10  DNSQKKVVDAQTGHHLVLASPGCGKTHILAERVKQARLQGIVYEDMLCLTFTNRAAREML 69

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  ++                                       E    L+V  +H F
Sbjct: 70  SRIKSVVA--------------------------------------EDFSALQVGNVHHF 91

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           C   +     E  + +  +I DEE+   +I E K+    ++M  NN   ++ +YEI+  +
Sbjct: 92  CAKFL---FDEGVVPAETSIIDEEECVSIIAEYKQQNEEAVM--NNYAQQREYYEIIHFA 146


>gi|302542688|ref|ZP_07295030.1| putative ATP-dependent DNA helicase (UvrD/REP) [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460306|gb|EFL23399.1| putative ATP-dependent DNA helicase (UvrD/REP) [Streptomyces
           himastatinicus ATCC 53653]
          Length = 244

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 41/153 (26%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++ +         V A  G+GKT  LV+ V R +   A P  +L LT ++ AA E+  R
Sbjct: 45  RQRAVVEHEGGPLLVLAGPGTGKTTTLVEAVARRVREGADPERILVLTFSRRAAVELRDR 104

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +                                          LE   G +  T H+FC 
Sbjct: 105 MTVR---------------------------------------LEGATGPRATTFHSFCY 125

Query: 142 AIMQQFPLEANITSHF-AIADEEQSKKLIEEAK 173
           A+++    + ++ +    +    +   ++ E  
Sbjct: 126 ALVRAH-QDVDLFADPLRLLSGPEQDVVVRELL 157


>gi|291529911|emb|CBK95496.1| ATP-dependent DNA helicase PcrA [Eubacterium siraeum 70/3]
          Length = 792

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 68/234 (29%), Gaps = 90/234 (38%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL----------------- 57
             S+T   Q  A      +  + A AGSGKT +L  R+  +LL                 
Sbjct: 14  YFSRTNDMQKKAVFRINGAVLIVAGAGSGKTTVLCNRIANMLLFGNAYNSNTVRELSDDD 73

Query: 58  ---------------------------ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
                                          P  +L +T T  AAAE+  R+  +     
Sbjct: 74  VAFAQSFLAGEIDNFDAAERLSEIFGEDRVKPWNILAVTFTNKAAAELKERLENMGADV- 132

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                  G+   T H+ C  I++Q   +
Sbjct: 133 --------------------------------------DGIWAATFHSACVRILRQDIEK 154

Query: 151 ANIT--SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
             +   S+F I D +   K+I    K+ +    + +     KA   ++  S D+
Sbjct: 155 LGMGYKSNFTIYDTDDQLKVI----KTVMKEHNISDKAVTPKAVQNLISRSKDK 204


>gi|306835518|ref|ZP_07468532.1| excision endonuclease subunit UvrD [Corynebacterium accolens ATCC
          49726]
 gi|304568575|gb|EFM44126.1| excision endonuclease subunit UvrD [Corynebacterium accolens ATCC
          49726]
          Length = 684

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          DL    + ++  A+ P     + A AG+GKT  +  R+  ++     +P  +L +T T  
Sbjct: 5  DLSLLDEDQRRAATAPRGPVCILAGAGTGKTRTITYRIANMVDQGFVNPQRVLAVTFTAR 64

Query: 74 AAAEMSHRVL 83
          AA EM  R+ 
Sbjct: 65 AAGEMRDRLR 74


>gi|227502915|ref|ZP_03932964.1| helicase [Corynebacterium accolens ATCC 49725]
 gi|227076337|gb|EEI14300.1| helicase [Corynebacterium accolens ATCC 49725]
          Length = 684

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          DL    + ++  A+ P     + A AG+GKT  +  R+  ++     +P  +L +T T  
Sbjct: 5  DLSLLDEDQRRAATAPRGPVCILAGAGTGKTRTITYRIANMVDQGFVNPQRVLAVTFTAR 64

Query: 74 AAAEMSHRVL 83
          AA EM  R+ 
Sbjct: 65 AAGEMRDRLR 74


>gi|308177918|ref|YP_003917324.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
 gi|307745381|emb|CBT76353.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 707

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
           ++   +DL++   +EQ  A++  +    + A AG+GKT  +  R+   +     +P+++L
Sbjct: 5   DNPPAVDLLAGLDAEQRQAAETLSGPLCILAGAGTGKTRAITHRIAHGVHTGIYNPTSVL 64

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK---SDMSKARHLLIT 123
            LT T  AAAEM  R+ + + A    +    +A + ++Q   P     S  +   H    
Sbjct: 65  ALTFTTRAAAEMRTRLRQ-LGASGVQTRTFHAAALRQLQYFWPQAIGGSLPNLVEHKAPL 123

Query: 124 ILETPGGLKVQ 134
           I E    L++ 
Sbjct: 124 IAEAARRLRIS 134


>gi|188534866|ref|YP_001908663.1| exonuclease V subunit beta [Erwinia tasmaniensis Et1/99]
 gi|188029908|emb|CAO97792.1| Exodeoxyribonuclease V beta chain [Erwinia tasmaniensis Et1/99]
          Length = 1178

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA AE+  R+   
Sbjct: 21  LIEASAGTGKTFTIGLLYLRLLLGLGGGAAFSRPLSVEEILVVTFTEAATAELRGRIRAN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +   +     + +D+ +A   L+          + TIH FC+ ++ 
Sbjct: 81  IHQLRIACIRGESQDPM-LAALMADITDLPQAAADLLAAERQMDEAGIFTIHGFCQRMLN 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + ++E    L   A       
Sbjct: 140 LNAFESGMLFEQELLEDE--TPLRRRATADFWRR 171


>gi|166030959|ref|ZP_02233788.1| hypothetical protein DORFOR_00640 [Dorea formicigenerans ATCC
           27755]
 gi|166029226|gb|EDR47983.1| hypothetical protein DORFOR_00640 [Dorea formicigenerans ATCC
           27755]
          Length = 614

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 49/215 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +S  K+++   S       V A  GSGKT  + +R+  L+ +    P  +L +T TK AA
Sbjct: 1   MSLNKAQKEAVSHKEGPCLVLAGPGSGKTLTIAKRIEYLIKVYKVRPEEILVITFTKYAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R   ++                               R L +T           T
Sbjct: 61  GEMRDRFQYVMEG-----------------------------RRLPVTF---------GT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++ +  + + +    I  EE+  +L++E  K            +      E+
Sbjct: 83  FHGIFYGILK-WAYKLDRS---NILSEEEKNQLLKEILKQM--DWEQTEKSQEADFLQEL 136

Query: 196 LEISNDEDIETLISDIISNR----TALKLIFFFFS 226
            E   +     +  +   +R       + ++  + 
Sbjct: 137 SEEIGNVGNNAVDIEFYESRRFPKDKFRELYRIYE 171


>gi|320539715|ref|ZP_08039379.1| exonuclease V (RecBCD complex), beta subunit [Serratia symbiotica
           str. Tucson]
 gi|320030327|gb|EFW12342.1| exonuclease V (RecBCD complex), beta subunit [Serratia symbiotica
           str. Tucson]
          Length = 1181

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTFTIGALYLRLLLGLGQDAAFYRPLTVEEILVVTFTEAATEELRGRIRNN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S E            D+S A   L++         + TIH FC+ ++ 
Sbjct: 81  IHELRLACVRGKSPEPL-FSALLDEIDDLSDAAAQLLSAERQMDEAAIYTIHGFCQRMLT 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +   F          L  +A       
Sbjct: 140 HNAFESGM--LFEQTLVRDELPLRRQACADFWRR 171


>gi|146296193|ref|YP_001179964.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409769|gb|ABP66773.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 970

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 30/129 (23%)

Query: 38  ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A+AG GKT  +    + L++   A P  ++ +T+T+ AA E+  R++             
Sbjct: 28  ASAGCGKTERIANLYVDLIVERKALPQQIVAITYTEKAARELKGRIISK----------- 76

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                             ++ R++ I  +       ++TIH+FC  +++ + + A + ++
Sbjct: 77  ------------------ARQRNIDIMTISKIQSSHIKTIHSFCIYLLRFYWMRAKVDAN 118

Query: 157 FAIADEEQS 165
           F I  E  +
Sbjct: 119 FKIVPELNA 127


>gi|315651806|ref|ZP_07904810.1| ATP-dependent DNA helicase PcrA [Eubacterium saburreum DSM 3986]
 gi|315485936|gb|EFU76314.1| ATP-dependent DNA helicase PcrA [Eubacterium saburreum DSM 3986]
          Length = 612

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 45/163 (27%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
           ++LI+ + +++           V A  GSGKT ++  R+  L+     +P+ +L +T ++
Sbjct: 1   MELINYSSNQKKAIEHGDGPLMVLAGPGSGKTFVITHRIKYLIKGPGINPAHILVVTFSR 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           AAA EM  R  +                                        L +   + 
Sbjct: 61  AAAKEMKDRFEK----------------------------------------LYSKSPVT 80

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             T H+   ++++         S   IA +E    LI+E  K 
Sbjct: 81  FGTFHSVFFSLLKTAY---GFGSE-QIASDELRYNLIKELIKR 119


>gi|300779588|ref|ZP_07089444.1| excision endonuclease subunit UvrD [Corynebacterium genitalium
          ATCC 33030]
 gi|300533698|gb|EFK54757.1| excision endonuclease subunit UvrD [Corynebacterium genitalium
          ATCC 33030]
          Length = 685

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             + + A+ P     + A AG+GKT  +  R+  L+      P  +L +T T  AA EM
Sbjct: 12 DPDQLVAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVAPQRVLAVTFTSRAAGEM 71

Query: 79 SHRVLEI 85
            R+ ++
Sbjct: 72 RDRLRDM 78


>gi|84494604|ref|ZP_00993723.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84384097|gb|EAP99977.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 729

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
             ++ +A++PT    V A AG+GKT  +  R+   +L+ A  P   L +T T  AA EM
Sbjct: 18 DPEQREVAANPTGPMVVLAGAGTGKTRAITHRIAYAVLSGAQQPQRTLAVTFTARAAGEM 77

Query: 79 SHRVLEI 85
            R+ ++
Sbjct: 78 RTRLRDL 84


>gi|145225238|ref|YP_001135916.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217724|gb|ABP47128.1| ATP-dependent DNA helicase, Rep family [Mycobacterium gilvum
          PYR-GCK]
          Length = 707

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          L+     EQ  A   P     V A AG+GKT  + +R+  L+ A    P  +L +T T+ 
Sbjct: 14 LLGDLDDEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFTQR 73

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+  +
Sbjct: 74 AAGEMRGRLRAL 85


>gi|207109725|ref|ZP_03243887.1| DNA helicase II (uvrD) [Helicobacter pylori HPKX_438_CA4C1]
          Length = 161

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 38/159 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           ++++  S       + A AGSGKT  L  R+  L+ +        L LT T  A+ EM  
Sbjct: 2   AQKIATSHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSKNTLTLTFTNKASKEMQE 61

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R L+++   + +   +                                      T H F 
Sbjct: 62  RALKLLKNQALIPPLL-------------------------------------CTFHRFG 84

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
              ++Q          F++ D ++ K L ++ K S+  +
Sbjct: 85  LLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISSFRA 123


>gi|291447588|ref|ZP_06586978.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350535|gb|EFE77439.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 634

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 41/167 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++D       ++ +   P     V A  G+GKT  LV+ V   +     P+ +L LT ++
Sbjct: 31  SVDPPLLDAGQRAVVDHPGGPLLVLAGPGTGKTTTLVESVAARVNRGGDPARILVLTFSR 90

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R+   + A                                         G +
Sbjct: 91  KAAVELRDRMAARLGAAR---------------------------------------GPQ 111

Query: 133 VQTIHAFCEAIMQQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLA 178
             T H++C A+++    +A++ +    +    +    + E     L 
Sbjct: 112 ATTFHSYCYALVRAH-QDADLFADPLRLLSGPEQDVTVRELLAGQLD 157


>gi|126434064|ref|YP_001069755.1| UvrD/REP helicase [Mycobacterium sp. JLS]
 gi|126233864|gb|ABN97264.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. JLS]
          Length = 707

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQ  A   P     V A AG+GKT  + +R+  L+ A    P  +L +T T  
Sbjct: 16  LLADLDEEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSR 75

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSA 99
           AA EM  R+  +      +    + A
Sbjct: 76  AAGEMRARLRALDQEAGGVGTGSVQA 101


>gi|331694979|ref|YP_004331218.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949668|gb|AEA23365.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 682

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 13  TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           T D +     EQL A + P     V A AG+GKT  + +R+  L+      P  +L +T 
Sbjct: 2   TADPLHDLDEEQLAAVTAPRGPVCVLAGAGTGKTRTITRRIAHLVATGHVAPGQVLAVTF 61

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA E+  R+   + A    +    +A + +++   P +    +   LL       G 
Sbjct: 62  TARAAGELRTRLR-ALGAAGVQARTFHAAALRQLRYFWP-QVVGDRQWQLLEHKFRAVGQ 119

Query: 131 LKV 133
             V
Sbjct: 120 AAV 122


>gi|315445535|ref|YP_004078414.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263838|gb|ADU00580.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 707

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          L+     EQ  A   P     V A AG+GKT  + +R+  L+ A    P  +L +T T+ 
Sbjct: 14 LLGDLDDEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFTQR 73

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+  +
Sbjct: 74 AAGEMRGRLRAL 85


>gi|314978138|gb|EFT22232.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2]
 gi|315088601|gb|EFT60577.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|302558546|ref|ZP_07310888.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302476164|gb|EFL39257.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 536

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 39/126 (30%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +    T    V A  G+GKT  LV+ V   +     P  +L LT ++ AA E+  R
Sbjct: 70  AQRSVVEHTTGPLLVLAGPGTGKTTTLVESVAARIARGGDPERILVLTFSRRAAVELRDR 129

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   I A                                              T H+FC 
Sbjct: 130 MALRIGAAHAPQA---------------------------------------TTFHSFCY 150

Query: 142 AIMQQF 147
           A+++  
Sbjct: 151 ALIRAH 156


>gi|331002011|ref|ZP_08325531.1| hypothetical protein HMPREF0491_00393 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411807|gb|EGG91212.1| hypothetical protein HMPREF0491_00393 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 613

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          ++LI+ + +++           V A  GSGKT ++  R+  L+     +P+ +L +T ++
Sbjct: 1  MELINYSSNQKKAIEHGGGPLMVLAGPGSGKTFVITHRIKYLIKGPGVNPAHILVVTFSR 60

Query: 73 AAAAEMSHR 81
          AAA EM  R
Sbjct: 61 AAAKEMKDR 69


>gi|255660244|ref|ZP_05405653.1| UvrD/REP helicase [Mycoplasma genitalium G37]
          Length = 637

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 57/197 (28%)

Query: 21  KSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
             +Q  A    +    V + AG+GKT I+  R   L+      PS +L +T TK AA EM
Sbjct: 2   NEQQKQAISCGKGVNVVYSGAGTGKTTIITNRFAYLVNKEKVDPSRILAITFTKKAAKEM 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+L++I       D  L+ +                                + T H+
Sbjct: 62  QFRILKLI-------DSSLAEKT------------------------------NIYTFHS 84

Query: 139 FCEAIM-----QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA-SIMLDNNEELKKAF 192
           FC   +     ++F           I D++ S  L E    S L  ++     +  K  F
Sbjct: 85  FCNKFLIQTLKKRF-----------IIDDDISYFLKEFLADSKLDINLAKQIIDNFKNTF 133

Query: 193 YEILEISNDEDIETLIS 209
            +  EI+  +  E LIS
Sbjct: 134 ADF-EINKLDQDERLIS 149


>gi|313816227|gb|EFS53941.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1]
 gi|315098848|gb|EFT70824.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|309803999|ref|ZP_07698081.1| ATP-dependent nuclease subunit A [Lactobacillus iners LactinV
           11V1-d]
 gi|308163918|gb|EFO66183.1| ATP-dependent nuclease subunit A [Lactobacillus iners LactinV
           11V1-d]
          Length = 1144

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 13/148 (8%)

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
           +I+    NK         L   L       + TI +FC  ++++F    N+  +F+I  +
Sbjct: 4   RIKNAIKNKIKEQPDNLFLKQQLAKVDIANISTIDSFCLEVIRKFYYVINLDPNFSIMTD 63

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS--------- 213
           +    L++E           +N ++    FY     + D ++E   S ++          
Sbjct: 64  DTQLSLLKEKALLNTEKYFFENKDQEFIDFYN--NFAGDREVEAARSMLLELYYVTLAQP 121

Query: 214 NRTAL--KLIFFFFSYLWRRKIIEKSLW 239
           N  A   +L FF+   + +  II  +LW
Sbjct: 122 NYEAFLKRLDFFYQIDINKNDIISSNLW 149


>gi|289428125|ref|ZP_06429828.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|289158725|gb|EFD06926.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|313807183|gb|EFS45676.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2]
 gi|313825512|gb|EFS63226.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1]
 gi|327327125|gb|EGE68904.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA3]
 gi|327443750|gb|EGE90404.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|328857036|gb|EGG06154.1| hypothetical protein MELLADRAFT_87299 [Melampsora larici-populina
           98AG31]
          Length = 1091

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 38/135 (28%)

Query: 42  SGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           SGKT +L  RV  L+      P  L  +T T  AA EM +R+  ++ A        L+ E
Sbjct: 74  SGKTRVLTCRVAYLIKNTGIDPKDLAVVTFTNKAANEMKNRLYVLLGA-------KLANE 126

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
           I                               + T H  C   ++Q   +  + +++ I 
Sbjct: 127 IV------------------------------MGTFHGVCVRFLRQHGSKVGLKANWVIC 156

Query: 161 DEEQSKKLIEEAKKS 175
           D +Q     +   K 
Sbjct: 157 DRKQQLAYCKHVLKD 171


>gi|108798380|ref|YP_638577.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|108768799|gb|ABG07521.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. MCS]
          Length = 714

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQ  A   P     V A AG+GKT  + +R+  L+ A    P  +L +T T  
Sbjct: 23  LLADLDEEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSR 82

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSA 99
           AA EM  R+  +      +    + A
Sbjct: 83  AAGEMRARLRALDQEAGGVGTGSVQA 108


>gi|322384701|ref|ZP_08058369.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150400|gb|EFX43893.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 913

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 49/162 (30%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +++T+ + +            A AG+GKT +L  R   LL +    P  +L +T T  AA
Sbjct: 54  LNETQIQAVR--HDRGPLLTLAGAGTGKTSVLTCRAAYLLKVRQVDPRQILLVTFTSKAA 111

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R                   +  + G    ++ +  AR                T
Sbjct: 112 AEMRER-------------------LADLPGISAVEAKLVGAR----------------T 136

Query: 136 IHAFCEAIMQQFPLEANI-----TSHFAIADEEQSKKLIEEA 172
            H+    +++Q   E ++       HF +      K+L++ A
Sbjct: 137 FHSLFLQVIRQEGCEDDLLTDQRRPHFIM------KRLLKIA 172


>gi|328754850|gb|EGF68466.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|313771951|gb|EFS37917.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|297192223|ref|ZP_06909621.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151259|gb|EDY67267.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 348

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 41/153 (26%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +         V A  G+GKT  LV+ V   + A   PS +L LT ++ AA E+  R
Sbjct: 53  AQRAVVDHGDGPLLVLAGPGTGKTTTLVEAVAARIAAGTDPSRILVLTFSRKAAVELRDR 112

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +                                           G +  T H++C 
Sbjct: 113 MALRLGGAR---------------------------------------GPQATTFHSYCY 133

Query: 142 AIMQQFPLEANITSHF-AIADEEQSKKLIEEAK 173
           A+++    +A++ +    +    +    + E  
Sbjct: 134 ALVRAH-QDADLFAEPLRLLSGPEQDVTVRELL 165


>gi|313809680|gb|EFS47414.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|313792361|gb|EFS40460.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1]
 gi|313801691|gb|EFS42931.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2]
 gi|314962480|gb|EFT06580.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1]
 gi|315077696|gb|EFT49747.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2]
 gi|327453453|gb|EGF00108.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|294635091|ref|ZP_06713603.1| exodeoxyribonuclease V, beta subunit [Edwardsiella tarda ATCC
           23685]
 gi|291091513|gb|EFE24074.1| exodeoxyribonuclease V, beta subunit [Edwardsiella tarda ATCC
           23685]
          Length = 1186

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL----ANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  L    LRLLL     +A+P       +L +T T+AA  E+  R+   
Sbjct: 19  LIEASAGTGKTFTLAALYLRLLLGLGEEHAYPRPLAVEEILVVTFTEAATEELRGRIRSN 78

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           SA    +       +D+ +A  LL+          + TIH FC+ ++ 
Sbjct: 79  IHDLRLACLRGYSAHPL-LSALLRQIADLPQAAALLLAAERQMDEAAIYTIHGFCQRMLS 137

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           Q   E+ +     +  +E    L  +A             + +     ++         E
Sbjct: 138 QNAFESGVLFQQTLLQDESQ--LQRQACADFWRRHCYPLPQAVAAIVSQLWS-----GPE 190

Query: 206 TLISDI 211
            L++++
Sbjct: 191 ALLAEL 196


>gi|282853719|ref|ZP_06263056.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|282583172|gb|EFB88552.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|314983238|gb|EFT27330.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3]
 gi|315090100|gb|EFT62076.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4]
          Length = 1071

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|218848008|ref|YP_002454758.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
 gi|218546139|gb|ACK98532.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
          Length = 666

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 72/215 (33%), Gaps = 55/215 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
            I   +S+     + +      A AGSGKT +L  +V  ++      P+ ++ LT TK A
Sbjct: 58  GIKLNESQIEAVRNVSGPVITLAGAGSGKTSVLTSKVGYMMNYKEIKPANIMILTFTKKA 117

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  +                            +S AR LL             
Sbjct: 118 AEEMKSRISNLPG------------------------LSISGARQLLA-----------G 142

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+    +++     A I     I   E+ K +   A K+ L  + L ++ E +     
Sbjct: 143 TFHSIFLRVIRN----AGINQK--IISSEKMKHI---AIKNILRDLKLADSYEPETIVSM 193

Query: 195 ILEISN----------DEDIETLISDIISNRTALK 219
           I    N             I+  + DI +     K
Sbjct: 194 IGYFKNHMIKPSDLPTKSVIDRELRDIYAMYEQWK 228


>gi|50842799|ref|YP_056026.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|289425489|ref|ZP_06427266.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|295130853|ref|YP_003581516.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|50840401|gb|AAT83068.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|289154467|gb|EFD03155.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|291376029|gb|ADD99883.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|313764135|gb|EFS35499.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1]
 gi|313819377|gb|EFS57091.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2]
 gi|313820642|gb|EFS58356.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1]
 gi|313822553|gb|EFS60267.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2]
 gi|313827479|gb|EFS65193.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2]
 gi|313830016|gb|EFS67730.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1]
 gi|313832980|gb|EFS70694.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1]
 gi|313838405|gb|EFS76119.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1]
 gi|314914865|gb|EFS78696.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4]
 gi|314918020|gb|EFS81851.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1]
 gi|314920396|gb|EFS84227.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3]
 gi|314924885|gb|EFS88716.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3]
 gi|314929976|gb|EFS93807.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1]
 gi|314956488|gb|EFT00776.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1]
 gi|314957332|gb|EFT01435.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1]
 gi|314960467|gb|EFT04569.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2]
 gi|314972837|gb|EFT16934.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1]
 gi|314975741|gb|EFT19836.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1]
 gi|314983661|gb|EFT27753.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1]
 gi|314986296|gb|EFT30388.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2]
 gi|314989617|gb|EFT33708.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3]
 gi|315080858|gb|EFT52834.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1]
 gi|315084654|gb|EFT56630.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2]
 gi|315085339|gb|EFT57315.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3]
 gi|315095786|gb|EFT67762.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1]
 gi|315101553|gb|EFT73529.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1]
 gi|315105905|gb|EFT77881.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
 gi|327329833|gb|EGE71588.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA2]
 gi|327442647|gb|EGE89301.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1]
 gi|327443715|gb|EGE90369.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2]
 gi|327452206|gb|EGE98860.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3]
 gi|327452695|gb|EGE99349.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2]
 gi|328752851|gb|EGF66467.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2]
 gi|328753882|gb|EGF67498.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1]
 gi|328761486|gb|EGF75010.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL099PA1]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|325120853|emb|CBZ56408.1| Helicase-like protein nhl, related [Neospora caninum Liverpool]
          Length = 991

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 10  HSETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           HS+    +S    ++ +   P   +  V A  GSGKT  +  R++RLLL    P  +L L
Sbjct: 407 HSKIFGRLS--AEQRRVVLAPAHANLCVIAGPGSGKTTAITARIIRLLLEGEGP--ILAL 462

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T TK  A E+  RVL+ +   S    E+ +    +        S   +         +  
Sbjct: 463 TFTKRGAEELRERVLDGL---SSTLAEMRALREARDPSSSDAPSLSKRTAEKRANHAQQQ 519

Query: 129 GGLKVQTIH 137
            G  +   H
Sbjct: 520 SGASI--FH 526



 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 25/74 (33%)

Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           A   L    +    + V T H F   +++++     + S F +A   +      E  ++ 
Sbjct: 594 AASALPLFHDLAERVFVGTFHKFGSLVLRRYGRAVGVPSSFLVATGSRQSHFAREVLEAF 653

Query: 177 LASIMLDNNEELKK 190
            A         L+ 
Sbjct: 654 KAREEAREEATLQS 667


>gi|315109404|gb|EFT81380.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|213965863|ref|ZP_03394054.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
 gi|213951441|gb|EEB62832.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
          Length = 710

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 15 DLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
          D ++    +Q   A+ P     + A AG+GKT  +  R+  L+      P  +L +T T 
Sbjct: 5  DYLAGLDPDQREAATAPMGPVCILAGAGTGKTRTITHRIKYLIDQGFVQPQKVLAVTFTS 64

Query: 73 AAAAEMSHRVLEI 85
           AA EM  R+ ++
Sbjct: 65 RAAGEMRDRLAKM 77


>gi|302558540|ref|ZP_07310882.1| ATP-dependent DNA helicase (UvrD/REP) [Streptomyces griseoflavus
           Tu4000]
 gi|302476158|gb|EFL39251.1| ATP-dependent DNA helicase (UvrD/REP) [Streptomyces griseoflavus
           Tu4000]
          Length = 771

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ++ D + +     ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 42  HSTLFPQVPDSADAVLEGLDPEQRAVATALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 101

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             PS++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 102 LQPSSVLAVTFTNRAAGEMRGRLRQ-LGAVGVQARTFHSAALRQLQYFWPKA 152


>gi|119867477|ref|YP_937429.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|119693566|gb|ABL90639.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. KMS]
          Length = 707

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           L++    EQ  A   P     V A AG+GKT  + +R+  L+ A    P  +L +T T  
Sbjct: 16  LLADLDEEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSR 75

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSA 99
           AA EM  R+  +      +    + A
Sbjct: 76  AAGEMRARLRALDQEAGGVGTGSVQA 101


>gi|314967655|gb|EFT11754.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|298529833|ref|ZP_07017236.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511269|gb|EFI35172.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1027

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 35/77 (45%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +    ++Q           V A  G+GKT  L+ +V RLL    +P  +L LT T+ AA 
Sbjct: 462 LEFNAAQQQAIEAGPEPVLVMAGPGTGKTQTLMGKVSRLLEQEVNPRHILVLTFTRKAAR 521

Query: 77  EMSHRVLEIITAWSHLS 93
           E+  R++ I      L 
Sbjct: 522 ELKDRLISIHGDDQALP 538


>gi|313812634|gb|EFS50348.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|302524415|ref|ZP_07276757.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
 gi|302433310|gb|EFL05126.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
          Length = 1124

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 19/176 (10%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E ++ + L   T  +  + + P   + V A AG+GKT  +  RV+ L+      P  +L 
Sbjct: 14  EIADALGLHRPTPEQATVIASPVEPSLVVAGAGAGKTETMAARVVWLVANGIVSPERVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++           + L     S  + +I      ++ +             
Sbjct: 74  LTFTRKAARQLGE------RVRARLRRLAGSGLLERIDPSGALRATV------------V 115

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            G   V T HA+   ++ +  L   +     +  E  S +L      +    +  D
Sbjct: 116 AGEPTVLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQLAHRVVSTWDNDLDTD 171


>gi|327329920|gb|EGE71674.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL097PA1]
          Length = 1072

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT T  A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|197286155|ref|YP_002152027.1| exonuclease V subunit beta [Proteus mirabilis HI4320]
 gi|194683642|emb|CAR44563.1| exodeoxyribonuclease V beta chain [Proteus mirabilis HI4320]
          Length = 1212

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 17/187 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL                +L +T T+AA  E+  R+ + 
Sbjct: 22  LIEASAGTGKTYTIGLLYLRLLLGLGGESAFHRPLSVEEILVVTFTEAATDELRARIRQN 81

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I           +  +    Q       +   A   L+          + TIH FC+ ++
Sbjct: 82  IHQLRLACIRHQVENDNNAYQILLDQIPNKMVAAQWLLEAERQMDEAAIYTIHGFCQRML 141

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +   F     +   +L +              + ++  A  EI         
Sbjct: 142 ATNAFESGV--LFEQVLIQDEYELKKRVCADFWRRHCYPLSYDVAYAVSEIWS-----GP 194

Query: 205 ETLISDI 211
           E L+ +I
Sbjct: 195 EQLLYEI 201


>gi|311743791|ref|ZP_07717597.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311312921|gb|EFQ82832.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 1050

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 39/155 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
              ++ +         V A  G+GKT  LV+ V   +      P  +L LT ++ AA EM
Sbjct: 28  DPDQRAVVDHRGAPLLVLAGPGTGKTTTLVELVADRIGHDEVQPDQVLMLTFSRKAAEEM 87

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +                                        T   ++  T HA
Sbjct: 88  RARVAARLGG--------------------------------------TAAPVRAMTFHA 109

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           +C A+++QF       +   +    +   ++ E  
Sbjct: 110 WCYALVRQFADPEEFAAPPTLMTAAEQDAVLAELL 144


>gi|89891075|ref|ZP_01202583.1| putative ATP-dependent DNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516719|gb|EAS19378.1| putative ATP-dependent DNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 1605

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 39/127 (30%)

Query: 19   QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
             T   Q++  + +    V A  GSGKT +LV ++  LLL  +  P   L LT +KAAA E
Sbjct: 1036 DTDQTQVINDNKSDKILVYAGPGSGKTKVLVHKIASLLLIEDIKPEQFLMLTFSKAAALE 1095

Query: 78   MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
               RV ++I  +S L                                      + + T H
Sbjct: 1096 FKQRVRKLIPEYSGL--------------------------------------ININTFH 1117

Query: 138  AFCEAIM 144
             FC  ++
Sbjct: 1118 GFCFQLL 1124


>gi|78224414|ref|YP_386161.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
 gi|78195669|gb|ABB33436.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
          Length = 1075

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 57/201 (28%), Gaps = 53/201 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
               +        R   V+A  G+GKT+ LV R+  LL      P  +  +T T  AA E
Sbjct: 461 PNPEQAEAIGCADRQVLVAAGPGTGKTYTLVARIAALLARPETVPEHVCAITFTNRAARE 520

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R++                                               + V T H
Sbjct: 521 VRERLVATAGGAGE--------------------------------------RVFVGTFH 542

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
            FC   ++Q           A+  EE  ++L+    K     +       +     + L 
Sbjct: 543 RFCLDWLRQE------EPGLAVVGEESRERLL----KRLFPDLGKKEQGAVADGIADHLH 592

Query: 198 ISND----EDIETLISDIISN 214
            S      E +   + ++   
Sbjct: 593 RSGLDGASESLRRYLEELAGR 613


>gi|170757205|ref|YP_001781068.1| hypothetical protein CLD_3123 [Clostridium botulinum B1 str. Okra]
 gi|169122417|gb|ACA46253.1| hypothetical protein CLD_3123 [Clostridium botulinum B1 str. Okra]
          Length = 670

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  V A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I  +    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISVSRRTP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ +     N      I   +++  LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRHFKNIN------IISSKEAYSLINNILISYLDSVNED 127


>gi|229826040|ref|ZP_04452109.1| hypothetical protein GCWU000182_01404 [Abiotrophia defectiva ATCC
           49176]
 gi|229789782|gb|EEP25896.1| hypothetical protein GCWU000182_01404 [Abiotrophia defectiva ATCC
           49176]
          Length = 618

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 74/216 (34%), Gaps = 47/216 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
           K +            V A  GSGKT ++  RV  LL      P T+L +T TKAAA EM 
Sbjct: 5   KPQLEAVRHVDGPMMVLAGPGSGKTAVITGRVRYLLEEMKIAPQTILVITFTKAAAMEMK 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R ++++                                         P G++  T H+ 
Sbjct: 65  ERFVKLMGE---------------------------------------PKGVQFATFHSV 85

Query: 140 CEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
              I++  +     +     I  EE ++  ++E  +S L     D  + +K    EI  +
Sbjct: 86  FFMILRVSYGY--GVD---QIITEEMTRNFLKEKIRS-LDLEEGDEKDFIKNVIGEISRV 139

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
            ++         +     A + IF  +    + + +
Sbjct: 140 KSEGVAIENYYSLNCPEEAFRDIFKSYEAFMKERGL 175


>gi|29829614|ref|NP_824248.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606722|dbj|BAC70783.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 770

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ++ D +       ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 43  HSTLFPQVPDSADAVLDGLDPEQRAVATALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 102

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             PS++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 103 LQPSSVLAVTFTNRAAGEMRGRLRQ-LGASGVQARTFHSAALRQLQYFWPKA 153


>gi|312792557|ref|YP_004025480.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877156|ref|ZP_07737126.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796056|gb|EFR12415.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312179697|gb|ADQ39867.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 950

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 32/146 (21%)

Query: 34  AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
              +A+AG GKT  +    + L+    A P  ++C+T+T+ AA E+ +R++         
Sbjct: 5   IIYTASAGCGKTENIANLYIDLINSQKALPGEIVCITYTEKAARELKNRIISK------- 57

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                 +K R L +  +       ++TIH+FC  +++ +   A 
Sbjct: 58  ----------------------AKQRGLDLVTISKIQNSHIKTIHSFCMYLLRFYWAWAK 95

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLA 178
           + ++F I    +  +LI +     L+
Sbjct: 96  VDTNFKIV--PEQNRLILKLVDHYLS 119


>gi|303326130|ref|ZP_07356573.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
 gi|302864046|gb|EFL86977.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
          Length = 1125

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 22  SEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
            EQ  A +       + A  G+GKT +L+ R+ RLL   A P  LL +T T+ AA E+  
Sbjct: 519 EEQNAALNAGPGPVLILAGPGAGKTRVLIGRLQRLLEEGARPQDLLAVTFTRRAAGELRE 578

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           R+   +   S L        +   + +K     +  A      +      
Sbjct: 579 RLSAALPHLSRLPQCDTLHGLAWGELRKAEPHCLLLAEDAAFRLFSAANA 628


>gi|237794768|ref|YP_002862320.1| helicase, UvrD/REP family [Clostridium botulinum Ba4 str. 657]
 gi|229260849|gb|ACQ51882.1| helicase, UvrD/REP family [Clostridium botulinum Ba4 str. 657]
          Length = 669

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  V A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I  +    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISVSRKIP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ +     N      I   +++  LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRHFKNIN------IISSKEAYSLINNILISYLDSVNED 127


>gi|227357275|ref|ZP_03841632.1| exodeoxyribonuclease V beta chain [Proteus mirabilis ATCC 29906]
 gi|227162538|gb|EEI47527.1| exodeoxyribonuclease V beta chain [Proteus mirabilis ATCC 29906]
          Length = 1212

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 17/187 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL                +L +T T+AA  E+  R+ + 
Sbjct: 22  LIEASAGTGKTYTIGLLYLRLLLGLGGESAFHRPLSVEEILVVTFTEAATDELRARIRQN 81

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I           +  +    Q       +   A   L+          + TIH FC+ ++
Sbjct: 82  IHQLRLACIRHQVENDNNAYQILLDQIPNKMVAAQWLLEAERQMDEAAIYTIHGFCQRML 141

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +   F     +   +L +              + ++  A  EI         
Sbjct: 142 ATNAFESGV--LFEQVLIQDEYELKKRVCADFWRRHCYPLSYDVAYAVSEIWS-----GP 194

Query: 205 ETLISDI 211
           E L+ +I
Sbjct: 195 EQLLYEI 201


>gi|168184263|ref|ZP_02618927.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
 gi|182672651|gb|EDT84612.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
          Length = 670

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  V A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I  +    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISVSRKIP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ +     N      I   +++  LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRHFKNIN------IISSKEAYSLINNILISYLDSVNED 127


>gi|32491015|ref|NP_871269.1| hypothetical protein WGLp266 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166221|dbj|BAC24412.1| recB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 1162

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 25/161 (15%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLL--------ANAHPSTLLCLTHTKAAAAEMSHRVL 83
            +  + A+AG+GKT+ ++   LRLLL               +L +T+T+ A  ++  R+ 
Sbjct: 16  GTCLIEASAGTGKTYSIIIFYLRLLLGLNIKSFPHGLSVKEILLVTYTEFAKNQLKERIR 75

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL---ETPGGLKVQTIHAFC 140
           + I          L +         P   ++   +  LI ++          + TIH FC
Sbjct: 76  KGIIH--------LKSACINKDETHPLFKEIKNVKKSLIKLIYAEHNIDEASIFTIHGFC 127

Query: 141 EAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLAS 179
             ++    +E+   +  +  I DE     L  +  K+    
Sbjct: 128 HKMLSANLIESKFFLDKN-TIEDES---YLYNQISKNFWEK 164


>gi|153941231|ref|YP_001390777.1| hypothetical protein CLI_1512 [Clostridium botulinum F str.
           Langeland]
 gi|152937127|gb|ABS42625.1| hypothetical protein CLI_1512 [Clostridium botulinum F str.
           Langeland]
 gi|295318849|gb|ADF99226.1| hypothetical protein CBF_1489 [Clostridium botulinum F str. 230613]
          Length = 670

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  V A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I  +    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISVSRRTP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ +     N      I   +++  LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRHFKNIN------IISSKEAYSLINNILISYLDSVNED 127


>gi|254384600|ref|ZP_04999939.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
 gi|194343484|gb|EDX24450.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
          Length = 764

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           + ++F   +++ D  L+     ++ +A+       V A AG+GKT  +  R+   + +  
Sbjct: 47  HSSAFPAAADSADAVLLGLDPEQREVATTLRGPVCVLAGAGTGKTRAITHRIAYGVRSGQ 106

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             P+++L +T T  AA EM  R+   + A    +    SA + ++Q   P  
Sbjct: 107 LMPASVLAVTFTNRAAGEMRGRLR-TLGAGGVQARTFHSAALRQLQYFWPKA 157


>gi|256375074|ref|YP_003098734.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919377|gb|ACU34888.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 876

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 26/176 (14%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++     P     V A AG+GKT  +  R+  L+         +L +T T  AA EM
Sbjct: 9   DPEQRAAVEAPRGPVCVLAGAGTGKTRTITHRIAHLVARGHVAAGQVLAVTFTARAAGEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +      +    +A + +++   P      + R +    L             
Sbjct: 69  RTRLR-ALGVPGAQARTFHAAALRQLRYFWPRVVGGDQWRLIDGNKL------------- 114

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
               ++ Q    A ++         +S  L + A +   A   L   ++   A   
Sbjct: 115 ---RMVAQAAHRAGLS--------TESDSLRDLASEIEWAKASLIAPDDYPAAVAR 159


>gi|226360933|ref|YP_002778711.1| exodeoxyribonuclease V beta chain [Rhodococcus opacus B4]
 gi|226239418|dbj|BAH49766.1| exodeoxyribonuclease V beta chain [Rhodococcus opacus B4]
          Length = 1103

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 15/159 (9%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A+AG+GKT+ +V    R +       S LL +T ++AA  E+  R  E   +
Sbjct: 14  PEGTTVLEASAGTGKTYAIVGLAARFVAEGGVDLSRLLLVTFSRAATQELRERTRERFGS 73

Query: 89  WSHLSDEI----LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +    +     LSA++      +    +++  R  L+  L       + T H+FC+ ++
Sbjct: 74  AAAALADPAAARLSADLVIRHLAEAAADEVALRRRRLLQALSDFDAATIVTTHSFCQRML 133

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                   +     IA E     ++ EA       ++ D
Sbjct: 134 D------GLG----IAGERDPDTVLVEAADDLTTEVIAD 162


>gi|322378358|ref|ZP_08052814.1| DNA helicase II [Helicobacter suis HS1]
 gi|322380928|ref|ZP_08054999.1| DNA helicase II [Helicobacter suis HS5]
 gi|321146651|gb|EFX41480.1| DNA helicase II [Helicobacter suis HS5]
 gi|321149215|gb|EFX43659.1| DNA helicase II [Helicobacter suis HS1]
          Length = 684

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
          + +   +++           V A AGSGKT  L  R+  L+      P   L LT T  A
Sbjct: 8  MQNLNPAQKRAVEHVQGPLLVLAGAGSGKTKTLTTRLAYLIGYVGIPPENTLTLTFTNKA 67

Query: 75 AAEMSHRVLEIITAWSHLS 93
          A+EM  R +++I   ++  
Sbjct: 68 ASEMHQRAMKLIGRRTYKP 86


>gi|302670855|ref|YP_003830815.1| UvrD/REP family ATP-dependent DNA helicase [Butyrivibrio
           proteoclasticus B316]
 gi|302395328|gb|ADL34233.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 638

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 44/186 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           I    ++          A V A  GSGKT ++V+R+  L+   +  PS++L +T TKAAA
Sbjct: 8   IKGNAAQMEAILHKDGPAMVLAGPGSGKTFVIVERLRHLIEECSVDPSSVLVITFTKAAA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM HR  +I  +                                          +   T
Sbjct: 68  IEMQHRFYKITDSL--------------------------------------YPEVCFGT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+    I++Q    +N ++ F IA E+   + +++     L+SI   + +E   A   I
Sbjct: 90  FHSVFYQIIRQ----SNPSNKFKIASEKDKYRFVKDIILK-LSSIHNIDKQESLDAIEMI 144

Query: 196 LEISND 201
            +I ++
Sbjct: 145 GDIISE 150


>gi|255323795|ref|ZP_05364921.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
          SK141]
 gi|255298975|gb|EET78266.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
          SK141]
          Length = 685

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          DL    + +   A+ P     + A AG+GKT  +  R+  L+      P  +L +T T  
Sbjct: 5  DLSLLDEDQLRAATAPRGPVCILAGAGTGKTRTITYRIANLVDQGFVSPQRVLAVTFTAR 64

Query: 74 AAAEMSHRVL 83
          AA EM  R+ 
Sbjct: 65 AAGEMRDRLR 74


>gi|291454017|ref|ZP_06593407.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356966|gb|EFE83868.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 743

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +  SF    E+ D  L      ++ +A+       V A AG+GKT  L  R+   +  N 
Sbjct: 22  HTPSFPRVPESADDVLAGLDPEQRAVATALHGPVCVLAGAGTGKTRALTHRIAYGVRTNR 81

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             P+++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 82  FQPTSVLAVTFTNRAAGEMRGRLRQ-LGAGGVQARTFHSAALRQLQYFWPKA 132


>gi|289769231|ref|ZP_06528609.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
 gi|289699430|gb|EFD66859.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 780

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ++ D + +     ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 51  HSTLFPQVPDSADAVLEGLDPEQREVATALRGPVCVLAGAGTGKTRAITHRIAYGVRAGI 110

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             PS++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 111 LQPSSVLAVTFTNRAAGEMRGRLRQ-LGASGVQARTFHSAALRQLQYFWPKA 161


>gi|27904885|ref|NP_778011.1| exodeoxyribonuclease V beta chain [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|32129525|sp|Q89AB3|EX5B_BUCBP RecName: Full=Exodeoxyribonuclease V beta chain
 gi|27904283|gb|AAO27116.1| exodeoxyribonuclease V beta chain [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 1180

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHR 81
           +    + A+AG+GKT  L    +RLLL                +L +T T+   AE+  R
Sbjct: 17  SGKILIEASAGTGKTFSLTILYIRLLLGITNHVKYKKGLLIKEILVVTFTEHTRAELEIR 76

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   I  +     +  S     +       +D  K   +L     +   L + TIH FC 
Sbjct: 77  IKTYIKIFKTACIKKYSNNYV-LSKLLSKITDFPKTIDILSKAENSIHELSIYTIHGFCY 135

Query: 142 AIMQ 145
            I++
Sbjct: 136 KILK 139


>gi|295097369|emb|CBK86459.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 1180

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTYTIAALYLRLLLGLGGNAAFSRPLSVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           +             +D  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRQTTDNPL-YASLLDEIADKQQAAQWLLLAERQMDEASVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E   +L  +A              ++ +A + +      +  E
Sbjct: 139 LNAFESGMLFEQQLIEDE--SELRYQACADFWRRHCYPLQRDIAEAVHALW-----KGPE 191

Query: 206 TLISDI 211
            L+  I
Sbjct: 192 ELLRAI 197


>gi|15827263|ref|NP_301526.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN]
 gi|221229741|ref|YP_002503157.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
 gi|13092812|emb|CAC30146.1| putative ATP-dependent DNA helicase [Mycobacterium leprae]
 gi|219932848|emb|CAR70731.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 717

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 36/145 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++     P     V A AG+GKT  +  R+  L+ A       +L +T T+ AAAEM
Sbjct: 16  DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAHLVGAGHVATGQVLAVTFTQRAAAEM 75

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                                 +A    +  +   G ++V T HA
Sbjct: 76  RSRL---------------------------------RALGAAVQAVSDFGVVRVLTFHA 102

Query: 139 FCEAIMQQF-PLEANITSHFAIADE 162
                ++ F P      + + + D 
Sbjct: 103 AAHRQLRYFWPRVIG-DTGWQLLDS 126


>gi|314923610|gb|EFS87441.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1]
          Length = 1071

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT TK A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTKKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|224539034|ref|ZP_03679573.1| hypothetical protein BACCELL_03934 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519362|gb|EEF88467.1| hypothetical protein BACCELL_03934 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 975

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 40/193 (20%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L ++   +Q     D        A AGSGK+  L  R+ RL+     P +++  T T+ A
Sbjct: 7   LHNELTEDQYNTVIDNHPEVLCLACAGSGKSRTLAFRISRLIYEGVTPESIIAFTFTEKA 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A  +  RV + +      +  +                                G + + 
Sbjct: 67  AESIKRRVADALEKCGFSAAMV--------------------------------GAMYIG 94

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKK-LIEEAKKSTLASIMLDNNEELKKAFY 193
           TIH++C+ ++ +   +      + + DE + K  L+   ++  L S+    +    K F 
Sbjct: 95  TIHSYCQHLLGEMNAKYR---QYEVLDENRLKLFLLSRFQELDLKSL---QDARGAKMFA 148

Query: 194 EILEISNDEDIET 206
            I EI+N   I  
Sbjct: 149 TISEIANAWKIAN 161


>gi|170759918|ref|YP_001786804.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406907|gb|ACA55318.1| helicase, UvrD/REP family [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 670

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  V A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I  +    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISVSRKIP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ +     N      I   +++  LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRHFKNIN------IISSKEAYSLINNILISYLDSVNED 127


>gi|315103757|gb|EFT75733.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2]
          Length = 1071

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT TK A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTKKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|311739795|ref|ZP_07713629.1| excision endonuclease subunit UvrD [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311304868|gb|EFQ80937.1| excision endonuclease subunit UvrD [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 685

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          DL    + +   A+ P     + A AG+GKT  +  R+  L+      P  +L +T T  
Sbjct: 5  DLSLLDEDQLRAATAPRGPVCILAGAGTGKTRTITYRIANLVDQGFVSPQRVLAVTFTAR 64

Query: 74 AAAEMSHRVL 83
          AA EM  R+ 
Sbjct: 65 AAGEMRDRLR 74


>gi|254388949|ref|ZP_05004180.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294814884|ref|ZP_06773527.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702667|gb|EDY48479.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294327483|gb|EFG09126.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 745

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           + + F +  E+ D +       ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 25  HSSLFPQVPESADAVLDGLDPEQRAVATTLHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 84

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P+++L +T T  AA EM  R+ + + A    +    SA + ++Q   P        R 
Sbjct: 85  LQPASVLAVTFTNRAAGEMRGRLRQ-LGAGGVQARTFHSAALRQLQYFWPRAVGGEVPRL 143

Query: 120 LLITI 124
           L   I
Sbjct: 144 LERKI 148


>gi|294631284|ref|ZP_06709844.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292834617|gb|EFF92966.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 392

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           + + F +  ++ D +       ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 35  HSSLFPQVPDSADAVLDGLDPEQREVATALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 94

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             PS++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 95  LQPSSVLAVTFTNRAAGEMRGRLRQ-LGAQGVQARTFHSAALRQLQYFWPKA 145


>gi|242280428|ref|YP_002992557.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
 gi|242123322|gb|ACS81018.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
          Length = 1034

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 5/121 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   +++            V A  G+GKT  L+ R+  LL        +L LT T+ AA 
Sbjct: 461 VRFNEAQNKAVEAGPDPVLVIAGPGTGKTQTLMGRIKHLLERGTRARRILALTFTRKAAE 520

Query: 77  EMSHRVLEIITAWSHLSDEILSAEI-----TKIQGKKPNKSDMSKARHLLITILETPGGL 131
           EM+ R+  ++     L        +            P   +   AR +           
Sbjct: 521 EMNDRMRSMLGDDEVLPRADTLHALALEYWASAFDHDPIILNEETARRVFGRANPELNSA 580

Query: 132 K 132
           K
Sbjct: 581 K 581


>gi|291277042|ref|YP_003516814.1| putative ATP-dependent DNA helicase [Helicobacter mustelae 12198]
 gi|290964236|emb|CBG40085.1| putative ATP-dependent DNA helicase [Helicobacter mustelae 12198]
          Length = 674

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L +    ++L A+       + A+AG+GKT  +V R+  L      P ++L LT T  
Sbjct: 1  MPLSNLNDEQRLAATAKMGHNLIIASAGTGKTSTIVGRIAHLFDNQILPESILLLTFTNK 60

Query: 74 AAAEMSHRVLEIITA 88
          AA EM  RV +    
Sbjct: 61 AAEEMIARVAKKFGQ 75


>gi|314966448|gb|EFT10547.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2]
 gi|315092775|gb|EFT64751.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1]
 gi|327327270|gb|EGE69046.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL103PA1]
          Length = 1071

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P +   V A AG+GKT ++  RV+ L+ +    P  +L LT TK A AE+S 
Sbjct: 26  EQERAVQAPLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTKKATAELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L+ E   
Sbjct: 86  RIESNLTRVGLLTSEQPR 103


>gi|305679858|ref|ZP_07402668.1| HRDC domain protein [Corynebacterium matruchotii ATCC 14266]
 gi|305660478|gb|EFM49975.1| HRDC domain protein [Corynebacterium matruchotii ATCC 14266]
          Length = 693

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           I+L      +Q  A+ P     + A AG+GKT  +  R+  L+       + ++ +T T
Sbjct: 1  MINLGDLDADQQQAATAPRGPVAILAGAGTGKTRTITYRIAHLIDQGFVGGNRVMAVTFT 60

Query: 72 KAAAAEMSHRVL 83
          K AA EM+HR+ 
Sbjct: 61 KRAAGEMAHRLR 72


>gi|284166465|ref|YP_003404744.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
 gi|284016120|gb|ADB62071.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
          Length = 1290

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 83/236 (35%), Gaps = 48/236 (20%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
           ++ +  +    +++ +         V A AG+GKT  ++ R+ R +      P  +L LT
Sbjct: 23  ADALSALEPKGNQRAVIESRADCTSVDAGAGTGKTTTMLMRIERAIERGEVDPDDVLVLT 82

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
               AA  +   V E +   +                                       
Sbjct: 83  FANEAAGSIREAVAERLDPAA-------------------------------------AA 105

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS-----TLASIMLDN 184
            + V T H+FC  +++ +      +  F +  E + ++++     +       A+    +
Sbjct: 106 AIDVYTYHSFCYRLVRDYAYYLGYSPEFDVVTERKRRRIVGRLLATNDYGFATATRGDGS 165

Query: 185 NEELKKAFYEILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
            ++L  A  + ++  + ED+  + L   +   RT L+L   F   LW  +   + L
Sbjct: 166 PDDLTAAVDDFIQSMSQEDVTPDELRERLPEVRT-LELCNEFV--LWLERTAGQDL 218


>gi|13638521|sp|P53528|UVRD_MYCLE RecName: Full=Probable DNA helicase II homolog
          Length = 714

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 36/145 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++     P     V A AG+GKT  +  R+  L+ A       +L +T T+ AAAEM
Sbjct: 13  DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAHLVGAGHVATGQVLAVTFTQRAAAEM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                                 +A    +  +   G ++V T HA
Sbjct: 73  RSRL---------------------------------RALGAAVQAVSDFGVVRVLTFHA 99

Query: 139 FCEAIMQQF-PLEANITSHFAIADE 162
                ++ F P      + + + D 
Sbjct: 100 AAHRQLRYFWPRVIG-DTGWQLLDS 123


>gi|328907789|gb|EGG27552.1| putative ATP-dependent DNA helicase [Propionibacterium sp. P08]
          Length = 1071

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P     V A AG+GKT ++  RV+ L+ +    P  +L LT T  A  E+S 
Sbjct: 26  EQERAVRAPLDPCVVIAGAGTGKTTVMAARVVWLVASGLVSPEEILGLTFTNKATMELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L  +   
Sbjct: 86  RIESNLTRVGLLKPDQPR 103


>gi|116327571|ref|YP_797291.1| DNA/RNA helicase UvrD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120315|gb|ABJ78358.1| DNA/RNA helicase UvrD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 674

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 46/172 (26%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
             ++           + A AGSGKT ++  R+  L+         ++ L+ T  +A EM 
Sbjct: 5   PEQEKAVCHVNGPLLIFAGAGSGKTRVISNRIAHLIENVGVPAGKIVALSFTNKSAREME 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV ++I                                       +   G+ + T H+ 
Sbjct: 65  ERVRKMIPK-------------------------------------QKLKGIVLSTFHSL 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              I+++          F + ++           +  L ++++ N  ELKKA
Sbjct: 88  GLNILKKHIGFLGYKQPFLLMNQNDQ--------EGFLTTLLIANKVELKKA 131


>gi|313837606|gb|EFS75320.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2]
 gi|314927513|gb|EFS91344.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1]
 gi|314972545|gb|EFT16642.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3]
          Length = 1071

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
            ++     P     V A AG+GKT ++  RV+ L+ +    P  +L LT T  A  E+S 
Sbjct: 26  EQERAVRAPLDPCVVIAGAGTGKTTVMAARVVWLVASGLVSPEEILGLTFTNKATMELSE 85

Query: 81  RVLEIITAWSHLSDEILS 98
           R+   +T    L  +   
Sbjct: 86  RIESNLTRVGLLKPDQPR 103


>gi|261415282|ref|YP_003248965.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
            subsp. succinogenes S85]
 gi|261371738|gb|ACX74483.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
            subsp. succinogenes S85]
 gi|302327939|gb|ADL27140.1| ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain
            protein [Fibrobacter succinogenes subsp. succinogenes
            S85]
          Length = 1655

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 20   TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
               ++ +     +   V A  GSGKTH+LV +V  LL +  A P ++LCLT+T+AA  E+
Sbjct: 1063 NDEQRKIIKSRKKHILVGAGPGSGKTHLLVHKVASLLWIEEAKPDSILCLTYTRAACREL 1122

Query: 79   SHRVLEIITAWSHLSDEILSAEIT-KIQGKKPNKSDMSKARHLLITILE 126
              R+ ++    +   +      +   I G + NK  +  A  ++    E
Sbjct: 1123 KKRLFDLAGPLAAKVNITTFHSLAFSILGVQGNKKALENADDVVSKAAE 1171


>gi|239990572|ref|ZP_04711236.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 670

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 41/167 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           ++D       ++ +   P     V A  G+GKT  LV+ V   +     P+ +L LT ++
Sbjct: 7   SVDPPLLDAGQRAVVDHPGGPLLVLAGPGTGKTTTLVESVAARVNRGGDPARILVLTFSR 66

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R+   + A                                         G +
Sbjct: 67  KAAVELRDRMAARLGAAR---------------------------------------GPQ 87

Query: 133 VQTIHAFCEAIMQQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLA 178
             T H++C A+++    +A++ +    +    +    + E     L 
Sbjct: 88  ATTFHSYCYALVRAH-QDADLFADPLRLLSGPEQDVTVRELLAGQLD 133


>gi|29829619|ref|NP_824253.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606727|dbj|BAC70788.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 1129

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 39/134 (29%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D      +++ +    +    V A  G+GKT  LV+ V   +     P  +L LT ++ 
Sbjct: 33  VDPPRLDANQRAVVDHTSGPLLVLAGPGTGKTTTLVESVAARIARGGDPERVLVLTFSRK 92

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+   + A                                             
Sbjct: 93  AAVELRDRMALRMGAARAPQA--------------------------------------- 113

Query: 134 QTIHAFCEAIMQQF 147
            T H+FC A+++  
Sbjct: 114 TTFHSFCYALVRAH 127


>gi|311898255|dbj|BAJ30663.1| putative UvrD/REP helicase family protein [Kitasatospora setae
           KM-6054]
          Length = 1090

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 40/125 (32%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++ +    +    V A  G+GKT  LV+ V R +     P  +L LT ++ AA E+  R+
Sbjct: 24  QRAVVEHASGPLLVLAGPGTGKTTTLVEAVARRVADGTAPERVLVLTFSRKAAMELRDRM 83

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
              I A +  +                                         T H+FC A
Sbjct: 84  TARIGATAPQA----------------------------------------TTFHSFCYA 103

Query: 143 IMQQF 147
           +++  
Sbjct: 104 LLRAH 108


>gi|116331818|ref|YP_801536.1| DNA/RNA helicase UvrD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125507|gb|ABJ76778.1| DNA/RNA helicase UvrD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 674

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 46/172 (26%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
             ++           + A AGSGKT ++  R+  L+         ++ L+ T  +A EM 
Sbjct: 5   PEQEKAVCHVNGPLLIFAGAGSGKTRVISNRIAHLIENVGVPAGKIVALSFTNKSAREME 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV ++I                                       +   G+ + T H+ 
Sbjct: 65  ERVRKMIPK-------------------------------------QKLKGIVLSTFHSL 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              I+++          F + ++           +  L ++++ N  ELKKA
Sbjct: 88  GLNILKKHIGFLGYKQPFLLMNQNDQ--------EGFLTTLLIANKVELKKA 131


>gi|158521184|ref|YP_001529054.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
 gi|158510010|gb|ABW66977.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
          Length = 1132

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 45/167 (26%)

Query: 11  SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCL 68
           +E  ++ +   + QL A +       + A  GSGKT  +  R+  L+ A   P   +L +
Sbjct: 464 AEPENITAGLSTAQLAAVNHGAGPMVIVAGPGSGKTRTITCRMAHLIQARQVPAGAVLAI 523

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA EM+ R+  ++   + L                                    
Sbjct: 524 TFTNRAAREMADRLAAMLGGNTDLP----------------------------------- 548

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               V T H FC  ++++   +    +   + DE   + L +   K 
Sbjct: 549 ---FVSTFHGFCLGLLRE---QGGFDA--VVLDEYDRRILAKTVLKR 587


>gi|229097023|ref|ZP_04227991.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
 gi|228686419|gb|EEL40329.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
          Length = 825

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 26/127 (20%)

Query: 23  EQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79
           EQ +        +  V A AG+GKT +++ R+L LL+     PS ++ +T T+ AA  M 
Sbjct: 81  EQFIIEHAPYKENIMVKAGAGTGKTTVMIDRILYLLIKEEVKPSEIVMITFTRDAAQNMH 140

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++  ++      +  +                       + ++++E    +++QTI +F
Sbjct: 141 TKLRNLLFTRFKATSSV-----------------------VFLSLIEKLNDIRIQTIDSF 177

Query: 140 CEAIMQQ 146
            + ++++
Sbjct: 178 AKDLLKE 184


>gi|225020706|ref|ZP_03709898.1| hypothetical protein CORMATOL_00713 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224946652|gb|EEG27861.1| hypothetical protein CORMATOL_00713 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 697

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
          +  I+L      +Q  A+ P     + A AG+GKT  +  R+  L+       + ++ +T
Sbjct: 3  TPVINLGDLDADQQQAATAPRGPVAILAGAGTGKTRTITYRIAHLIDQGFVGGNRVMAVT 62

Query: 70 HTKAAAAEMSHRVL 83
           TK AA EM+HR+ 
Sbjct: 63 FTKRAAGEMAHRLR 76


>gi|54024515|ref|YP_118757.1| putative RecB protein [Nocardia farcinica IFM 10152]
 gi|54016023|dbj|BAD57393.1| putative RecB protein [Nocardia farcinica IFM 10152]
          Length = 1113

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 68/171 (39%), Gaps = 17/171 (9%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII-- 86
           P  +  + A+AG+GKTH +V   +R +       + LL +T ++AA  E+  R  +    
Sbjct: 24  PRGTTVLEASAGTGKTHAIVGLAVRYVAEAGVRIAELLLVTFSRAATQELRERARDRFVA 83

Query: 87  --TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
              A +       + +         + ++++  R  L+T L       + T H+FC+ ++
Sbjct: 84  VAAALADPDSARAAGDELIAHLAAADDTEVALRRTRLLTALSDFDAGTIATTHSFCQRML 143

Query: 145 QQFPLEANITSHFAIADEEQSKKLIE---EAKKSTLASIMLDNNEELKKAF 192
                E  +       + + + +L+E   +   +    + L      +  F
Sbjct: 144 ----DELGLAG-----ERDTAARLVETVDDLVVTVADDLYLHRYARAQPPF 185


>gi|194333976|ref|YP_002015836.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194311794|gb|ACF46189.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 1064

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 31/141 (21%)

Query: 35  WVSANAGSGKTHILVQR-VLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           ++SA AGSGKT  L      +LL   A P  +L  T T  AA E+  RV  ++       
Sbjct: 8   FISAGAGSGKTTRLTSILYEKLLSGEARPDAILATTFTTKAAGELKDRVRAML------- 60

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                               +   R  L   +      ++ T+++ C  ++++F  E  +
Sbjct: 61  --------------------LHHKRDDLAAAI---AESRIGTVNSVCGGLLKRFSFELGL 97

Query: 154 TSHFAIADEEQSKKLIEEAKK 174
           T    I DE+ +   I  A  
Sbjct: 98  TVDQRILDEKAALVQISRAID 118


>gi|94987114|ref|YP_595047.1| superfamily I DNA/RNA helicase [Lawsonia intracellularis
          PHE/MN1-00]
 gi|94731363|emb|CAJ54726.1| Superfamily I DNA and RNA helicases [Lawsonia intracellularis
          PHE/MN1-00]
          Length = 711

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            D  +   ++    + P     V A AGSGKT  ++ R+  L      PS++L LT T+
Sbjct: 1  MFDTSTLNSAQLEAVTAPDGPVLVIAGAGSGKTRTIIYRLAWLAEQGIPPSSMLLLTFTR 60

Query: 73 AAAAEMSHR 81
           A+ EM HR
Sbjct: 61 KASQEMLHR 69


>gi|317125674|ref|YP_004099786.1| ATP-dependent DNA helicase, Rep family [Intrasporangium calvum
          DSM 43043]
 gi|315589762|gb|ADU49059.1| ATP-dependent DNA helicase, Rep family [Intrasporangium calvum
          DSM 43043]
          Length = 713

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 15 DLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72
          D++ +   EQ  +AS P     V A AG+GKT  +  R+   + +    P  +L +T T 
Sbjct: 9  DILERLDPEQREVASAPPGPLCVLAGAGTGKTRAITHRIAYAVHSGVQQPQRILAVTFTA 68

Query: 73 AAAAEMSHRVLEI 85
           AA EM  R+  +
Sbjct: 69 RAAGEMRTRLRAL 81


>gi|302668932|ref|YP_003832757.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302397272|gb|ADL36175.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 924

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 33/171 (19%)

Query: 7   FQEHSETIDLIS-QTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST 64
            +E + T D+ + +    Q  A + T   W ++A AG+GKT +   RV  LL     P  
Sbjct: 280 LEEEASTKDISNLKLTQAQTAAVNVTNGFWRINAGAGAGKTMVTALRVWNLLNQGVRPEE 339

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T A A EM  R+   I  +                              L   +
Sbjct: 340 ILLITFTNAGAKEMRDRIQLCIETF-----------------------------KLNYRV 370

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                 + + T +AF + ++         T    I D+ +   +I      
Sbjct: 371 --NLDDMIICTFNAFGDLVIGDNYANLGYTKKPKIIDDVERYGIIARLMNE 419


>gi|157372049|ref|YP_001480038.1| exonuclease V subunit beta [Serratia proteamaculans 568]
 gi|157323813|gb|ABV42910.1| exodeoxyribonuclease V, beta subunit [Serratia proteamaculans 568]
          Length = 1183

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTFTIGALYLRLLLGLGQAAAFPRPLTVEEILVVTFTEAATEELRGRIRSN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +            D+  A   L+          + TIH FC+ ++ 
Sbjct: 81  IHGLRIACVRGSSKDPL-FNALMAEIDDLPDAAAQLLAAERQMDEAAIYTIHGFCQRMLT 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F     +    L  +A       
Sbjct: 140 HNAFESGI--LFEQTLVQDELPLRRQACADFWRR 171


>gi|253988072|ref|YP_003039428.1| exonuclease V subunit beta [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779522|emb|CAQ82683.1| exodeoxyribonuclease V beta chain [Photorhabdus asymbiotica]
          Length = 1201

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 10/129 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL                +L +T T+AA  E+  R+ E 
Sbjct: 22  LIEASAGTGKTYTIGILYLRLLLGLGKNAAFPRPLSVEEILVVTFTEAATDELRGRIREN 81

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I           +    +  Q       D  +A   L+          + TIH FC+ ++
Sbjct: 82  IHTLRLACIRNEVEGTESAYQQLLDEIPDKEQAAIWLLAAERQMDEAAIYTIHGFCQRML 141

Query: 145 QQFPLEANI 153
                E+ I
Sbjct: 142 AHNAFESGI 150


>gi|282163632|ref|YP_003356017.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE]
 gi|282155946|dbj|BAI61034.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE]
          Length = 1087

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 40/151 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
              ++        +  V A AG+GKT ++  +   L+      P  L+ LT ++ AA  M
Sbjct: 21  NDEQKRAIEAAKGAILVVAGAGTGKTTMITAKAAYLIKEKKLKPERLIMLTFSREAAKHM 80

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
              ++ I+                              AR +              T H+
Sbjct: 81  KDEIVRILPE----------------------------ARDVYAN-----------TFHS 101

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           FC   ++    +  IT  + + DE  +K L+
Sbjct: 102 FCYEFLRDHSAKTGITDDYQVLDEANAKFLM 132


>gi|254974366|ref|ZP_05270838.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091760|ref|ZP_05321238.1| putative ATP-dependent DNA helicase [Clostridium difficile CIP
           107932]
 gi|255313490|ref|ZP_05355073.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516178|ref|ZP_05383854.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649274|ref|ZP_05396176.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682446|ref|YP_003213731.1| putative ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260686045|ref|YP_003217178.1| putative ATP-dependent DNA helicase [Clostridium difficile R20291]
 gi|306519374|ref|ZP_07405721.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-32g58]
 gi|260208609|emb|CBA61329.1| putative ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260212061|emb|CBE02644.1| putative ATP-dependent DNA helicase [Clostridium difficile R20291]
          Length = 688

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 44/216 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           ID+    +++            + A  GSGKT ++  R+  +++  N  P+ +L ++ TK
Sbjct: 10  IDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPTRILAISFTK 69

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A++ EM +R         +LSD+I   ++T                              
Sbjct: 70  ASSIEMKNR-------ALNLSDDIRLNKVTY----------------------------- 93

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H+    I++ +    N+ S F    +E+SK++  +A   +L     D++E + +  
Sbjct: 94  -GTFHSVFFKILR-YFERYNLDSIF----DEKSKRMTIKAILKSLNIENADDDENIGQVI 147

Query: 193 YEILEISNDE-DIETLISDIISNRTALKLIFFFFSY 227
            EI  + N+  D     S++++    LK+   +   
Sbjct: 148 NEISYVKNELMDKNEFNSEVLTKDEFLKVYNLYEEQ 183


>gi|306821434|ref|ZP_07455038.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
 gi|304550509|gb|EFM38496.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
          Length = 1587

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 55/218 (25%)

Query: 6    SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPST 64
            S +++ E  + +S  + E ++  D ++   V A AGSGKT +LV ++  LLL  +     
Sbjct: 1021 SPEKYKELFEELSPKQKE-IINDDNSQFITVLAGAGSGKTKVLVHKLASLLLMEDVKAEQ 1079

Query: 65   LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            LL LT ++AAA E   R++E+I   ++  D                              
Sbjct: 1080 LLMLTFSRAAATEFKKRLIELIGDGAYFVD------------------------------ 1109

Query: 125  LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                    ++T H++C  I+ Q                E+S+ ++ +A    L+  +   
Sbjct: 1110 --------IKTFHSYCFDILGQRGTV------------EKSENIVSKAVDEILSKKVEQG 1149

Query: 185  NEELKKAFYEILEISN-DEDIETLISDIISNRTALKLI 221
              ++ K+   I E  + DED   L+  II+    +++I
Sbjct: 1150 --QVTKSVIVIDEAQDMDEDSFKLLEAIIAANDGIRVI 1185


>gi|217032964|ref|ZP_03438438.1| hypothetical protein HPB128_182g18 [Helicobacter pylori B128]
 gi|216945333|gb|EEC24007.1| hypothetical protein HPB128_182g18 [Helicobacter pylori B128]
          Length = 68

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 34/64 (53%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +   + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ +    
Sbjct: 5  RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64

Query: 91 HLSD 94
              
Sbjct: 65 KRKP 68


>gi|76802567|ref|YP_327575.1| helicase [Natronomonas pharaonis DSM 2160]
 gi|76558432|emb|CAI50023.1| probable helicase [Natronomonas pharaonis DSM 2160]
          Length = 1028

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 47/214 (21%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           Y + F +  E  + +++ + E ++ +D      V A AG+GKT  L  RV  L+     P
Sbjct: 242 YDDLFSDIDEEGNDLNRAQREAVVTNDLRN--LVVAAAGTGKTLALTYRVAYLVAEGVDP 299

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           + +  LT+T+ AA EM  R+ E                                      
Sbjct: 300 ARIAALTYTRQAAREMELRLEEQFGI---------------------------------- 325

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                     V+TIH+F   I Q+         +  +AD +    LI+E  +        
Sbjct: 326 ------EQADVRTIHSFAYEIAQETA-----DGYLDVADSQDLYNLIDEVIREARNGQRE 374

Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
              E   +  +       +E      ++ ++ R+
Sbjct: 375 RFFEHYTQFLFHYDHTHLEEADFDSRTNYVAKRS 408


>gi|89099734|ref|ZP_01172607.1| YjcD [Bacillus sp. NRRL B-14911]
 gi|89085481|gb|EAR64609.1| YjcD [Bacillus sp. NRRL B-14911]
          Length = 761

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 16/143 (11%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           +      ++    S       V A AGSGKT +L  R   +L      P +++ +T T  
Sbjct: 137 NGFQLDAAQSAAVSHIDGPLLVLAGAGSGKTRVLTTRTAYMLQELRIDPKSIMLVTFTAK 196

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS--KARHLLITILETPGGL 131
           AAAEM  R+++     S  + ++L+     I  +  +  D     ++ LL    +     
Sbjct: 197 AAAEMKRRLIDYPGIKSAQAQQLLAGTFHSIFYRILSFHDREGWNSQKLLKKEWQR---- 252

Query: 132 KVQTIHAFCEAIMQQFPLEANIT 154
                    E I++    E  I 
Sbjct: 253 ---------EQILKGAAKELKID 266


>gi|168180089|ref|ZP_02614753.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum
           NCTC 2916]
 gi|182669169|gb|EDT81145.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum
           NCTC 2916]
          Length = 670

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  V A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I  +    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISVSRKIP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ +     N      I   +++  LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRHFKNIN------IISSKETYSLINNILISYLDSVNED 127


>gi|111225391|ref|YP_716185.1| putative ATP-dependent DNA helicase PcrA [Frankia alni ACN14a]
 gi|111152923|emb|CAJ64671.1| putative ATP-dependent DNA helicase PcrA [Frankia alni ACN14a]
          Length = 1208

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 21/167 (12%)

Query: 12  ETIDLIS--QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
           +  DL+    T  +   A+ P     + A AGSGKT ++  RV+ L+         +L L
Sbjct: 54  DLRDLLEVPYTDEQIAAATAPLEPGVIVAGAGSGKTSVMAARVVWLVATRQVRAEQVLGL 113

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA E++ RV   +                     + +                  
Sbjct: 114 TFTTKAAGELAGRVRLALRKAGAADAGGWPGAPGSAADAEVD------------------ 155

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           G   V T HAF   ++    L   +     +       +L     ++
Sbjct: 156 GEPTVATYHAFAGRLVVDNALRLGLEPDVQLLSGAARYQLAARVARA 202


>gi|86742424|ref|YP_482824.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569286|gb|ABD13095.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1124

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 82/251 (32%), Gaps = 63/251 (25%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLC 67
           +    +D +     ++L AS  +    V A  G+GKT  LV  +   +  +  P    L 
Sbjct: 480 DTPSVLDGLD--PEQRLAASHLSGPLLVLAGPGTGKTRTLVHAIAHRVAEHGVPAGECLA 537

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T+ AA E++ R+  ++                                       + 
Sbjct: 538 VTFTRRAAGELAERLAGLLG--------------------------------------DA 559

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA--------------- 172
            G +   T H     I+++   +        +AD+    +LI  A               
Sbjct: 560 AGRVLATTFHGLGLTIIREQHAKLARGPQVQVADDAVRVELIAAALHGEGDARTRRRVAA 619

Query: 173 ------KKSTLASIMLDNNEELKKAFYE-ILEISNDEDIETLISDIISNRTALKLIFFFF 225
                 +   L   + D++     A Y+  L   +  D++ LI+  ++   +   +   +
Sbjct: 620 GVAELKRHRALGQAIRDHDLVGALARYDAALRDRDMVDLDDLITLPLTLLRSSPDLAEHY 679

Query: 226 SYLWRRKIIEK 236
              WR   +++
Sbjct: 680 QRRWRHVWVDE 690


>gi|260599161|ref|YP_003211732.1| exonuclease V subunit beta [Cronobacter turicensis z3032]
 gi|260218338|emb|CBA33351.1| Exodeoxyribonuclease V beta chain [Cronobacter turicensis z3032]
          Length = 1180

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 16/156 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA----HP-----STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL       HP       LL +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTYTIAALYLRLLLGLGGEAAHPRPLTVEELLVVTFTEAATEELRGRIRSN 80

Query: 86  ITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I     + L +        ++  + P+K+  ++   L    ++      + TIH FC+ +
Sbjct: 81  IHELRVACLRERTDDPLYQRLLDEIPDKALAARTLMLAERQID---EAAIFTIHGFCQRM 137

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +     E+ +     + ++E    L  +A       
Sbjct: 138 LSLNAFESGMPFEQQLIEDE--SLLRYQACADFWRR 171


>gi|283786520|ref|YP_003366385.1| exodeoxyribonuclease V beta subunit [Citrobacter rodentium ICC168]
 gi|282949974|emb|CBG89602.1| exodeoxyribonuclease V beta subunit [Citrobacter rodentium ICC168]
          Length = 1182

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           + +     G      D  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRN-ATDNPLYAGLLAEIDDKEQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +   F +   E    L  +A              E+ +  +E       +  +
Sbjct: 139 MNAFESGM--LFELQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGPQ 191

Query: 206 TLISDI 211
            L++DI
Sbjct: 192 ALLADI 197


>gi|160940477|ref|ZP_02087822.1| hypothetical protein CLOBOL_05367 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437057|gb|EDP14824.1| hypothetical protein CLOBOL_05367 [Clostridium bolteae ATCC
          BAA-613]
          Length = 608

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          ++   +++           V A  GSGKT ++  RV  L       PS +L +T T+AAA
Sbjct: 1  MAFNDAQKTAIRHREGPMLVLAGPGSGKTTVITNRVRYLTEKAGVDPSHILVITFTRAAA 60

Query: 76 AEMSHRVLEIITA 88
           EM  R  +I  A
Sbjct: 61 REMKERYEQIAQA 73


>gi|262203374|ref|YP_003274582.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
 gi|262086721|gb|ACY22689.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
          Length = 717

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++     P     V A AG+GKT  + +R+  L+     +P  +L +T T  AA EM
Sbjct: 32 DPEQRAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLIDTGQVNPGQVLAVTFTARAAGEM 91

Query: 79 SHRVLEI 85
            R+  +
Sbjct: 92 RGRLRSL 98


>gi|258406520|ref|YP_003199262.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798747|gb|ACV69684.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 1027

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 4/112 (3%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +    ++           V A  G+GKT  L+ RV RLL        +L LT T+A A E
Sbjct: 465 TPNPEQEAAVQAGPEPVLVQAGPGTGKTRTLLARVRRLLEQGTPAKEILLLTFTRATAEE 524

Query: 78  MSHRVLEIITAWSHLSDEILS----AEITKIQGKKPNKSDMSKARHLLITIL 125
           + +R+    +A + +    L     A   +  G+ P       AR L +  +
Sbjct: 525 LRNRLQLETSAAAEIQAGTLHSLAYAHFVQHHGRDPVLLSEEDARSLFVKAV 576


>gi|255654798|ref|ZP_05400207.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449542|ref|ZP_06891319.1| ATP-dependent helicase [Clostridium difficile NAP08]
 gi|296878135|ref|ZP_06902150.1| ATP-dependent helicase [Clostridium difficile NAP07]
 gi|296261606|gb|EFH08424.1| ATP-dependent helicase [Clostridium difficile NAP08]
 gi|296430888|gb|EFH16720.1| ATP-dependent helicase [Clostridium difficile NAP07]
          Length = 688

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 44/216 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           ID+    +++            + A  GSGKT ++  R+  +++  N  P+ +L ++ TK
Sbjct: 10  IDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPTRILAISFTK 69

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A++ EM +R         +LSD+I   ++T                              
Sbjct: 70  ASSIEMKNR-------ALNLSDDIRLNKVTY----------------------------- 93

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H+    I++ +    N+ S F    +E+SK++  +A   +L     D++E + +  
Sbjct: 94  -GTFHSVFFKILR-YFERYNLDSIF----DEKSKRMTIKAILKSLNIENADDDENIGQVI 147

Query: 193 YEILEISNDE-DIETLISDIISNRTALKLIFFFFSY 227
            EI  + N+  D     S++++    LK+   +   
Sbjct: 148 NEISYVKNELMDKNEFNSEVLTKDEFLKVYNLYEEQ 183


>gi|255305752|ref|ZP_05349924.1| putative ATP-dependent DNA helicase [Clostridium difficile ATCC
           43255]
          Length = 688

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 44/216 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           ID+    +++            + A  GSGKT ++  R+  +++  N  P+ +L ++ TK
Sbjct: 10  IDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPTRILAISFTK 69

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A++ EM +R         +LSD+I   ++T                              
Sbjct: 70  ASSIEMKNR-------ALNLSDDIRLNKVTY----------------------------- 93

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H+    I++ +    N+ S F    +E+SK++  +A   +L     D++E + +  
Sbjct: 94  -GTFHSVFFKILR-YFERYNLDSIF----DEKSKRMTIKAILKSLNIENADDDENIGQVI 147

Query: 193 YEILEISNDE-DIETLISDIISNRTALKLIFFFFSY 227
            EI  + N+  D     S++++    LK+   +   
Sbjct: 148 NEISYVKNELMDKNEFNSEVLTKDEFLKVYNLYEEQ 183


>gi|288560440|ref|YP_003423926.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
 gi|288543150|gb|ADC47034.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
          Length = 1565

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 38/129 (29%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
               ++    +  +   + A  G+GKT +L++R+  L+      PS+LL +T T+ AA E
Sbjct: 6   NKNQKRAAYYNGDKYLVIEAGPGAGKTRVLIERIKFLINEEKVEPSSLLVITFTRKAAEE 65

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ + I                                            +++ TIH
Sbjct: 66  LKERLYKDIDESVV-------------------------------------SMMQISTIH 88

Query: 138 AFCEAIMQQ 146
           AFC  I+ +
Sbjct: 89  AFCRVILSE 97


>gi|225571482|ref|ZP_03780478.1| hypothetical protein CLOHYLEM_07580 [Clostridium hylemonae DSM
           15053]
 gi|225159958|gb|EEG72577.1| hypothetical protein CLOHYLEM_07580 [Clostridium hylemonae DSM
           15053]
          Length = 1066

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 64/225 (28%)

Query: 8   QEHSETIDLISQTKS----EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP 62
           Q+  +  + I +T+     ++       R   V A  G+GKT  LV  +L LL      P
Sbjct: 464 QKEHKAKEQIPETERLDPGQESAVRSAARRTAVIAGPGTGKTKTLVSHILYLLERRKVKP 523

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           S +  +T T  AA E+  R+   +     +                              
Sbjct: 524 SEITAVTFTNEAARELRERIQRQLGGRRRV------------------------------ 553

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE-----------------QS 165
                 G ++  T HA C A ++    E  ++  F++ADE                    
Sbjct: 554 ------GTMQAGTFHAVCLAFLK----EQGLS--FSLADETEAKEIAAEAAKESGLHITG 601

Query: 166 KKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
           K+L+E+  +   A++  +      + +   L+     D + L+ +
Sbjct: 602 KQLLEQVSREKSAALSEEEMSPQVREYERRLKERKLLDFDGLLLE 646


>gi|226948693|ref|YP_002803784.1| hypothetical protein CLM_1591 [Clostridium botulinum A2 str. Kyoto]
 gi|226844125|gb|ACO86791.1| hypothetical protein CLM_1591 [Clostridium botulinum A2 str. Kyoto]
          Length = 670

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  V A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I  +    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISVSRRTP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ +     N      I   ++   LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRHFKNIN------IISSKEVYSLINNILISYLDSVNED 127


>gi|203288066|ref|YP_002223081.1| exodeoxyribonuclease V, beta chain [Borrelia recurrentis A1]
 gi|201085286|gb|ACH94860.1| exodeoxyribonuclease V, beta chain [Borrelia recurrentis A1]
          Length = 1147

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 25/147 (17%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             + A+AG+GKT+ L   +  LL    + P+ +L LT TK A  EM  R+L+ I      
Sbjct: 14  ILIEASAGTGKTYTLEHIITNLLTTTMYTPNEILVLTFTKKATEEMHTRILKSIEHIYQN 73

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                 +K  +LL  I E    + + TI+ F    +  F +E  
Sbjct: 74  ----------------------AKTDNLLKNIYEQSNKIFISTINKFALYSLNNFQIETE 111

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLAS 179
             S + + +   S+  I+E     L  
Sbjct: 112 NFSKYTVKENFTSE--IDEIIYEFLRK 136


>gi|317049330|ref|YP_004116978.1| exodeoxyribonuclease V subunit beta [Pantoea sp. At-9b]
 gi|316950947|gb|ADU70422.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. At-9b]
          Length = 1179

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 35  WVSANAGSGKTHILVQRVL---------RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    L         R          +L +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIGLLYLRLLLGLGGERAYPRPLSVEEILVVTFTEAATAELRGRIRAN 79

Query: 86  ITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I     + +     +  + ++  + P  +D +                 + TIH FC+ +
Sbjct: 80  IHELRLACIRGHSNNPMLAQLLTEMPQPADAASLLLAAER---QMDEAAIFTIHGFCQRM 136

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +     E+ +     + ++EQ   L+++A       
Sbjct: 137 LNLNAFESGMLFEQQLIEDEQQ--LLKQATADFWRR 170


>gi|328884887|emb|CCA58126.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae
           ATCC 10712]
          Length = 726

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ET D +       ++ +A   +    V A AG+GKT  +  R+   + +  
Sbjct: 6   HSTLFPQVPETADAVLDGLDPEQREVALALSGPVCVLAGAGTGKTRAITHRIAYGVRSGR 65

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P+++L +T T  AA EM  R+ + + A    +    SA + ++Q   P        R 
Sbjct: 66  LQPASVLAVTFTNRAAGEMRGRLRQ-LGAGGVQARTFHSAALRQLQFFWPKAVGGDLPRL 124

Query: 120 LLITILETPGGLK 132
           L   I        
Sbjct: 125 LERKIQLVADAAA 137


>gi|255099864|ref|ZP_05328841.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-63q42]
          Length = 688

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 44/216 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           ID+    +++            + A  GSGKT ++  R+  +++  N  P+ +L ++ TK
Sbjct: 10  IDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPTRILAISFTK 69

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A++ EM +R         +LSD+I   ++T                              
Sbjct: 70  ASSIEMKNR-------ALNLSDDIRLNKVTY----------------------------- 93

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H+    I++ +    N+ S F    +E+SK++  +A   +L     D++E + +  
Sbjct: 94  -GTFHSVFFKILR-YFERYNLDSIF----DEKSKRMTIKAILKSLNIENADDDENIGQVI 147

Query: 193 YEILEISNDE-DIETLISDIISNRTALKLIFFFFSY 227
            EI  + N+  D     S++++    LK+   +   
Sbjct: 148 NEISYVKNELMDKNEFNSEVLTKDEFLKVYNLYEEQ 183


>gi|226327092|ref|ZP_03802610.1| hypothetical protein PROPEN_00957 [Proteus penneri ATCC 35198]
 gi|225204310|gb|EEG86664.1| hypothetical protein PROPEN_00957 [Proteus penneri ATCC 35198]
          Length = 1203

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 23/190 (12%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL                +L +T T AA  E+  R+ + 
Sbjct: 22  LIEASAGTGKTYTIGLLYLRLLLGLGGESAFYRPLSVEEILVVTFTDAATDELRARIRKN 81

Query: 86  ITAWS----HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           I            E  +    ++  + PNK     A   L+          + TIH FC+
Sbjct: 82  IHELRLACIRHDVESCNDTYHELLKQIPNK---DLAALWLLEAERQMDEAAIYTIHGFCQ 138

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++     E+ +   F     +   +L                + ++  A  +I      
Sbjct: 139 RMLANNAFESGV--LFEQVLIQDEYELKRRVCADFWRRHCYPLSYDVANAVSQIWS---- 192

Query: 202 EDIETLISDI 211
              E L+ +I
Sbjct: 193 -GPEQLLYEI 201


>gi|182436130|ref|YP_001823849.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776756|ref|ZP_08236021.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
 gi|178464646|dbj|BAG19166.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657089|gb|EGE41935.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 738

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ET D +       ++ +A        V A AG+GKT  L  R+   + A  
Sbjct: 6   HSTLFPQVPETPDAVLDGLDPEQREVALALHGPVCVLAGAGTGKTRALTHRIAYGVRAGI 65

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P+T+L +T T  AA EM  R+ + + A    +    SA + ++Q   P        R 
Sbjct: 66  LQPATVLAVTFTNRAAGEMRGRLRQ-LGATGVQARTFHSAALRQLQYFWPKAVGGELPRL 124

Query: 120 LLITI 124
           L   +
Sbjct: 125 LERKV 129


>gi|86742471|ref|YP_482871.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569333|gb|ABD13142.1| ATP-dependent DNA helicase, Rep family [Frankia sp. CcI3]
          Length = 736

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          DL++    EQ  A+  P     + A AG+GKT  +  RV  ++      P  +L +T T 
Sbjct: 20 DLLAALDPEQRAAAGAPLGPVCILAGAGTGKTRTITHRVAHMVAQGGVGPGQILAVTFTA 79

Query: 73 AAAAEMSHRVL 83
           AA E+  R+ 
Sbjct: 80 RAAGELRGRLR 90


>gi|239626269|ref|ZP_04669300.1| UvrD/REP helicase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520499|gb|EEQ60365.1| UvrD/REP helicase [Clostridiales bacterium 1_7_47FAA]
          Length = 608

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          ++   +++           V A  GSGKT ++  RV  L       PS +L +T T+AAA
Sbjct: 1  MAFNDTQKKAIRHRQGPMLVLAGPGSGKTTVITNRVRYLTEQAGVDPSHILVITFTRAAA 60

Query: 76 AEMSHR 81
           EM  R
Sbjct: 61 REMKER 66


>gi|126698329|ref|YP_001087226.1| putative ATP-dependent DNA helicase [Clostridium difficile 630]
 gi|115249766|emb|CAJ67583.1| putative DNA helicase, UvrD/REP type [Clostridium difficile]
          Length = 688

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 44/216 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           ID+    +++            + A  GSGKT ++  R+  +++  N  P+ +L ++ TK
Sbjct: 10  IDIRKLNENQLEAVEHIDGPCMILAGPGSGKTRVITYRIANMVVNKNIAPTRILAISFTK 69

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A++ EM +R         +LSD+I   ++T                              
Sbjct: 70  ASSIEMKNR-------ALNLSDDIRLNKVTY----------------------------- 93

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H+    I++ +    N+ S F    +E+SK++  +A   +L     D++E + +  
Sbjct: 94  -GTFHSVFFKILR-YFERYNLDSIF----DEKSKRMTIKAILKSLNIENADDDENIGQVI 147

Query: 193 YEILEISNDE-DIETLISDIISNRTALKLIFFFFSY 227
            EI  + N+  D     S++++    LK+   +   
Sbjct: 148 NEISYVKNELMDKNEFNSEVLTKDEFLKVYNLYEEQ 183


>gi|296332606|ref|ZP_06875067.1| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673887|ref|YP_003865559.1| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150524|gb|EFG91412.1| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412131|gb|ADM37250.1| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 759

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 36/133 (27%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
               +     +    ++      V A AGSGKT +L  R   ++      P  +L +T T
Sbjct: 130 LFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPPEHMLLVTFT 189

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AEM  R                   + K  G +P     +K R L+          
Sbjct: 190 TKAVAEMKER-------------------MAKQYGLQP-----AKVRRLVT--------- 216

Query: 132 KVQTIHAFCEAIM 144
              T H+    I+
Sbjct: 217 --GTFHSLFYKIL 227


>gi|322805730|emb|CBZ03295.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum H04402
           065]
          Length = 670

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  V A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I  +    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISVSRRTP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ +     N      I   ++   LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRHFKNIN------IISSKEVYSLINNILISYLDSVNED 127


>gi|329939653|ref|ZP_08288954.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301223|gb|EGG45118.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 742

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F    ++ D +       ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 6   HSTLFPRVPDSADAVLDGLDPEQRAVATALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 65

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             PS++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 66  LQPSSVLAVTFTNRAAGEMRGRLRQ-LGAAGVQARTFHSAALRQLQYFWPKA 116


>gi|284033230|ref|YP_003383161.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812523|gb|ADB34362.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1076

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 39/127 (30%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            +Q +   P     V A  G+GKT  LV+ V+  +         +L LT  + AA E+  
Sbjct: 32  DQQAVVDHPGGPLLVLAGPGTGKTTTLVEAVVDRVANRGLSADQVLVLTFGRKAATELRD 91

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+   +   +                                            T H+FC
Sbjct: 92  RITTRLGRTTRSMPS--------------------------------------MTFHSFC 113

Query: 141 EAIMQQF 147
            A++++F
Sbjct: 114 YALLRRF 120


>gi|4455255|emb|CAB36754.1| putative protein [Arabidopsis thaliana]
 gi|7269362|emb|CAB79421.1| putative protein [Arabidopsis thaliana]
          Length = 938

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 52/160 (32%)

Query: 16  LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           ++S    ++  A S+ +    V A  GSGK                 PS +L +T TKAA
Sbjct: 244 MLSLNDRQRDAACSNISTPLMVIAGPGSGK--------------GLLPSNILAMTFTKAA 289

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            +EM  R+ +     +                                        + + 
Sbjct: 290 TSEMRERIGKSAGKKAAKD-------------------------------------ITIS 312

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           T H+F   + +    +   TS F++    Q ++ I EA +
Sbjct: 313 TFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAIIEAVR 352


>gi|304396685|ref|ZP_07378565.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. aB]
 gi|304355481|gb|EFM19848.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. aB]
          Length = 1179

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA AE+  R+ E 
Sbjct: 21  LIEASAGTGKTFTIGLLYLRLLLGLGGENAYSRPLSVEEILVVTFTEAATAELRGRIREN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S      Q       D+S+A   L+          + TIH FC+ ++ 
Sbjct: 81  IHQLRLACIRGESRNPMH-QLLLAQMPDLSQAAAQLLAAERQMDEAAIFTIHGFCQRMLN 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + ++EQ+  L++++       
Sbjct: 140 LNAFESGMLFEQELIEDEQA--LLKQSTADFWRR 171


>gi|261342239|ref|ZP_05970097.1| exodeoxyribonuclease V, beta subunit [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315575|gb|EFC54513.1| exodeoxyribonuclease V, beta subunit [Enterobacter cancerogenus
           ATCC 35316]
          Length = 1180

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGNAAFPRPLSVEELLVVTFTEAATAELRGRIRAN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           +             +D  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRQTTDNPL-YASLLEEIADKQQAAQWLLLAERQMDDASVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E   +L  +A              ++ +A + +      +  E
Sbjct: 139 LNAFESGMLFEQQLIEDE--SELRYQACADFWRRHCYPLPRDIAEAVHALW-----KGPE 191

Query: 206 TLISDI 211
            L+  I
Sbjct: 192 DLLRAI 197


>gi|253578540|ref|ZP_04855812.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850858|gb|EES78816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 608

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 43/170 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           + +  S+    +  +    V A  GSGKT ++V+R   ++     P S++L +T ++AAA
Sbjct: 1   MKRNPSQLRAITHLSGPMMVLAGPGSGKTSVIVERTAYMINEGKIPASSILVVTFSRAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R L+ +                                       +    +   T
Sbjct: 61  TEMKERFLKFVG--------------------------------------QNRSEVTFGT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            H     I++         S   I  EE+   ++ E  +     +  + +
Sbjct: 83  FHGIFYGILKAAYHL----SAANILSEEEKFSILREMTEKYGQEMAQEGD 128


>gi|297192217|ref|ZP_06909615.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720135|gb|EDY64043.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 757

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           + + F +  E+ D +       ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 40  HSSLFPQVPESADAVLDGLDPEQREVATALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 99

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK--SDMSKA 117
             P+++L +T T  AA EM  R+ + + A    +    SA + ++Q   P     DM + 
Sbjct: 100 LQPASVLAVTFTNRAAGEMRGRLRQ-LGAGGVQARTFHSAALRQLQYFWPKAVGGDMPRL 158

Query: 118 RHLLITIL-ETPGGLKV 133
               I ++ E     ++
Sbjct: 159 LERKIQLVAEAAARCRI 175


>gi|37524633|ref|NP_927977.1| exonuclease V subunit beta [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784058|emb|CAE12927.1| Exodeoxyribonuclease V beta chain [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 1202

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL                +L +T T+AA  E+  R+ E 
Sbjct: 22  LIEASAGTGKTYTIGILYLRLLLGLGKDAAFSRPLSVEEILVVTFTEAATNELRGRIREN 81

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNK-SDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I             E      +  N+  D  +A   L+          + TIH FC+ ++
Sbjct: 82  IHKLRLACIRNAIEETEPAYQQLLNEIPDKGQAAIWLLAAERQMDEAAIYTIHGFCQRML 141

Query: 145 QQFPLEANI 153
                E+ I
Sbjct: 142 AHNAFESGI 150


>gi|238760477|ref|ZP_04621614.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia aldovae ATCC 35236]
 gi|238701319|gb|EEP93899.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia aldovae ATCC 35236]
          Length = 1182

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+ + 
Sbjct: 6   LIEASAGTGKTFTIGVLYLRLLLGLGGNAAFRRPLMVEEILVVTFTEAATEELRGRIRDN 65

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I          +S +    Q      +D+S+A   L+          + TIH FC+ ++ 
Sbjct: 66  IHGLRIACVRGVSVDPMH-QALLAEIADLSEAAAQLLAAERQMDEAAIYTIHGFCQRMLV 124

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F     +    L  +A       
Sbjct: 125 NNAFESGI--LFEQTLVQDELPLRRQACADFWRR 156


>gi|297202235|ref|ZP_06919632.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
 gi|197710248|gb|EDY54282.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
          Length = 774

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F    ++ D + +     ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 49  HSTLFPRTPDSADAVLEGLDPEQREVATALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 108

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             PS++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 109 LQPSSVLAVTFTNRAAGEMRGRLRQ-LGASGVQARTFHSAALRQLQYFWPKA 159


>gi|203284532|ref|YP_002222272.1| exodeoxyribonuclease V, beta chain [Borrelia duttonii Ly]
 gi|201083975|gb|ACH93566.1| exodeoxyribonuclease V, beta chain [Borrelia duttonii Ly]
          Length = 1147

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 25/147 (17%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             + A+AG+GKT+ L   +  LL    + P+ +L LT TK A  EM  R+L+ I      
Sbjct: 14  ILIEASAGTGKTYTLEHIITNLLTTTMYTPNEILVLTFTKKATEEMHTRILKSIEHIYQN 73

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                 +K  +LL  I E    + + TI+ F    +  F +E  
Sbjct: 74  ----------------------AKTDNLLKNIYEQSNKIFISTINKFALYSLNNFQIETE 111

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLAS 179
             S + + +   S+  I+E     L  
Sbjct: 112 NFSKYTVKENFTSE--IDEIIYEFLRK 136


>gi|239929054|ref|ZP_04686007.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291437391|ref|ZP_06576781.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340286|gb|EFE67242.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 735

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ++ D +       ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 6   HSTFFPQVPDSADAVLDGLDPEQRAVATALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 65

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             PS++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 66  LQPSSVLAVTFTNRAAGEMRGRLRQ-LGAVGVQARTFHSAALRQLQYFWPKA 116


>gi|325661049|ref|ZP_08149676.1| hypothetical protein HMPREF0490_00409 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325472556|gb|EGC75767.1| hypothetical protein HMPREF0490_00409 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 207

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +   +++          A V A  GSGKT ++ +RV  L+      P  +L +T TKAAA
Sbjct: 1  MGFNEAQTKAICHKNGPAMVLAGPGSGKTLVITRRVEYLIKKYGVRPEQILVITFTKAAA 60

Query: 76 AEMSHRVLEIITA 88
           EM  R   I   
Sbjct: 61 KEMRERFARITKE 73


>gi|254496066|ref|ZP_05108967.1| ATP-dependent DNA helicase Rep [Legionella drancourtii LLAP12]
 gi|254354708|gb|EET13342.1| ATP-dependent DNA helicase Rep [Legionella drancourtii LLAP12]
          Length = 686

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 40/158 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +D+++  +   +   D      V A AGSGKT ++ Q++  L+       S++  +T T 
Sbjct: 18  LDMLNSHQKAAVHYID--GPLLVLAGAGSGKTRVITQKIGYLINTCGYAASSVCAVTFTN 75

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA EM  RV  ++ A +                                       GLK
Sbjct: 76  KAANEMRARVAAVLPAANRR-------------------------------------GLK 98

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           + T H    +++++      +   F+I D E   +++ 
Sbjct: 99  IATFHTLGLSMIKRDLALCELKKGFSIFDSEDCVQILR 136


>gi|297570992|ref|YP_003696766.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931339|gb|ADH92147.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 677

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68
          H E I L S    ++ +A +      V A AG+GKT  +  R+   + + A  P  +L +
Sbjct: 2  HPEAI-LESLDPDQREVARNVHGPMAVLAGAGTGKTRAITHRIAYAVHSGAFDPRNILAV 60

Query: 69 THTKAAAAEMSHRVLEI 85
          T T  AA+EM  R+ ++
Sbjct: 61 TFTTKAASEMRSRLRDL 77


>gi|321314915|ref|YP_004207202.1| putative ATP-dependent DNA helicase [Bacillus subtilis BSn5]
 gi|320021189|gb|ADV96175.1| putative ATP-dependent DNA helicase [Bacillus subtilis BSn5]
          Length = 759

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 36/133 (27%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
               +     +    ++      V A AGSGKT +L  R   ++      P  +L +T T
Sbjct: 130 LFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPPENMLLVTFT 189

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AEM  R+                                +K R L+          
Sbjct: 190 TKAVAEMKERMANQYG------------------------LQPAKVRRLVT--------- 216

Query: 132 KVQTIHAFCEAIM 144
              T H+    I+
Sbjct: 217 --GTFHSLFYKIL 227


>gi|291483665|dbj|BAI84740.1| hypothetical protein BSNT_01975 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 759

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 36/133 (27%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
               +     +    ++      V A AGSGKT +L  R   ++      P  +L +T T
Sbjct: 130 LFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPPENMLLVTFT 189

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AEM  R+                                +K R L+          
Sbjct: 190 TKAVAEMKERMANQYG------------------------LQPAKVRRLVT--------- 216

Query: 132 KVQTIHAFCEAIM 144
              T H+    I+
Sbjct: 217 --GTFHSLFYKIL 227


>gi|328884880|emb|CCA58119.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 1088

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 39/134 (29%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D      +++ +         V A  G+GKT  LV+ V   +     P  LL LT ++ 
Sbjct: 1   MDPPQLDAAQREVVDHTRGPLLVLAGPGTGKTTTLVEAVAARVAQGTDPERLLVLTFSRK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+   +                   G++P ++                     
Sbjct: 61  AAVELRDRMAARLG------------------GRRPPQA--------------------- 81

Query: 134 QTIHAFCEAIMQQF 147
            T H++C A+++  
Sbjct: 82  TTFHSYCYALIRAH 95


>gi|82778196|ref|YP_404545.1| exonuclease V subunit beta [Shigella dysenteriae Sd197]
 gi|81242344|gb|ABB63054.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella
           dysenteriae Sd197]
          Length = 1180

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLDGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|156932704|ref|YP_001436620.1| exonuclease V subunit beta [Cronobacter sakazakii ATCC BAA-894]
 gi|156530958|gb|ABU75784.1| hypothetical protein ESA_00489 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1180

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA----HP-----STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL       HP       LL +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTYTIAALYLRLLLGLGGEAAHPRPLTVEELLVVTFTEAATEELRGRIRSN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           + +    +           AR LL+          + TIH FC+ ++ 
Sbjct: 81  IHELRVACLRERTDDPLYQRLLDEIPDKPLAARTLLL-AERQIDEAAIFTIHGFCQRMLS 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + ++E    L  +A       
Sbjct: 140 LNAFESGMPFEQQLIEDE--SLLRYQACADFWRR 171


>gi|238924183|ref|YP_002937699.1| ATP-dependent DNA helicase [Eubacterium rectale ATCC 33656]
 gi|238875858|gb|ACR75565.1| ATP-dependent DNA helicase [Eubacterium rectale ATCC 33656]
          Length = 617

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 72/220 (32%), Gaps = 46/220 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++  K++         +  V A  GSGKT ++  R  +L+  +   PS +L +T TKAAA
Sbjct: 1   MNFNKAQLGAIEHKDGAMLVLAGPGSGKTAVITHRTKKLITKHHVKPSEILVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R   +      + DE ++                                    T
Sbjct: 61  NEMKERFNSL------MKDERVNVSF--------------------------------GT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            HA    I++             IADE      I E   S       D NE +     EI
Sbjct: 83  FHAVFFTILKYAYRFT----SANIADESVRYGFIREIL-SYYRLEYKDENEFIGNLLAEI 137

Query: 196 LEISNDE-DIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             I N   DIE   S +       + I+  +    +   +
Sbjct: 138 SLIKNSRIDIENFYSGVCGE-EIFRDIYKKYETRLKENRL 176


>gi|325062343|gb|ADY66033.1| exodeoxyribonuclease V, beta subunit [Agrobacterium sp. H13-3]
          Length = 1061

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 33/187 (17%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             V A AG+GKTH +  ++   +      P  +L +T T+ AAAE+  R+   + A   +
Sbjct: 6   VIVPAGAGAGKTHRIKTQLSDWVKRGVVRPERILAVTFTETAAAELRERIRAGLLADGLV 65

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           S+ +                                    V TIH     ++ +  L A 
Sbjct: 66  SEAM------------------------------AVERAYVSTIHGLGLRLLTEHALAAG 95

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           ++       + +   LI ++     A  +     E ++  YE    + D   +TL   ++
Sbjct: 96  VSPQPRHLGDAERDLLIRQSLAH--AKSLDPIKAEPERFGYEANWQTGDTVEDTLRGRVL 153

Query: 213 SNRTALK 219
           S    L+
Sbjct: 154 SMIDLLR 160


>gi|148379390|ref|YP_001253931.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153932608|ref|YP_001383766.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937834|ref|YP_001387316.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. Hall]
 gi|148288874|emb|CAL82958.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152928652|gb|ABS34152.1| helicase, UvrD/REP family [Clostridium botulinum A str. ATCC 19397]
 gi|152933748|gb|ABS39247.1| helicase, UvrD/REP family [Clostridium botulinum A str. Hall]
          Length = 670

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 46/172 (26%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
            ID     + ++        +  V A  GSGKT +++ RV+ L+     +P+ +L +T T
Sbjct: 1   MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AAA  M  R                                          I  +    
Sbjct: 61  RAAAMNMKER---------------------------------------YKKISVSRKIP 81

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T H     I+ +     N      I   ++   LI     S L S+  D
Sbjct: 82  FFGTFHGLFYKILNRHFKNIN------IISSKEVYSLINNILISYLDSVNED 127


>gi|323188764|gb|EFZ74049.1| exodeoxyribonuclease V, beta subunit [Escherichia coli RN587/1]
          Length = 1168

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 8   LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 67

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 68  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 125

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 126 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 178

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 179 QALLRDI 185


>gi|167465630|ref|ZP_02330719.1| UvrD/REP helicase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 316

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 38/138 (27%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +++T+ + +            A AG+GKT +L  R   LL +    P  +L +T T  AA
Sbjct: 54  LNETQIQAVR--HDRGPLLTLAGAGTGKTSVLTCRAAYLLKVRQVDPRQILLVTFTSKAA 111

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R                   +  + G    ++ +  AR                T
Sbjct: 112 AEMRER-------------------LADLPGISAVEAKLVGAR----------------T 136

Query: 136 IHAFCEAIMQQFPLEANI 153
            H+    +++Q   E ++
Sbjct: 137 FHSLFLQVIRQEGCEDDL 154


>gi|293412165|ref|ZP_06654888.1| exodeoxyribonuclease V [Escherichia coli B354]
 gi|291468936|gb|EFF11427.1| exodeoxyribonuclease V [Escherichia coli B354]
          Length = 1183

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|117623172|ref|YP_852085.1| DNA helicase IV [Escherichia coli APEC O1]
 gi|237707053|ref|ZP_04537534.1| HelD [Escherichia sp. 3_2_53FAA]
 gi|91071632|gb|ABE06513.1| DNA helicase IV [Escherichia coli UTI89]
 gi|115512296|gb|ABJ00371.1| HelD [Escherichia coli APEC O1]
 gi|226898263|gb|EEH84522.1| HelD [Escherichia sp. 3_2_53FAA]
 gi|315287593|gb|EFU46999.1| UvrD/REP helicase [Escherichia coli MS 110-3]
          Length = 715

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMHERIRERLHTEDITARTFHALALHIIQ 315


>gi|238796584|ref|ZP_04640091.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia mollaretii ATCC 43969]
 gi|238719562|gb|EEQ11371.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia mollaretii ATCC 43969]
          Length = 1200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 16/156 (10%)

Query: 35  WVSANAGSGKTHILVQ-----------RVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
            + A+AG+GKT  +             R             +L +T T+AA  E+  R+ 
Sbjct: 18  LIEASAGTGKTFTIGVLYLRLLLGLGGRAA--FSRPLTVEEILVVTFTEAATEELRGRIR 75

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           + I          +S      +       D+S+A   L+          + TIH FC+ +
Sbjct: 76  DNIHELRIACVRGVSDNPMH-RALLAEIVDLSEAAAQLLAAERQMDEAAIYTIHGFCQRM 134

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +     E+ I   F     +    L  +A       
Sbjct: 135 LANNAFESGI--LFEQTLVQDELPLRRQACADFWRR 168


>gi|222832939|gb|EEE71416.1| predicted protein [Populus trichocarpa]
          Length = 292

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 21/128 (16%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAH----------------PSTLLCLTHTKAAA 75
            S  + A+AG+GKT  +    LRL+L +                  P  +L +T T+AA 
Sbjct: 134 GSRLIEASAGTGKTWTIAALYLRLVLGHGEGSLDGISSTAFERPLMPPDILVMTFTRAAT 193

Query: 76  AEMSHRVLEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            E+S R+   +                 A +  ++   P  +   +A   L    E    
Sbjct: 194 RELSDRIRRRLIEAVQCFRGEAEPAPHDAFLHALREAYPEGAARERAAWRLAMAAECMDD 253

Query: 131 LKVQTIHA 138
             + TI A
Sbjct: 254 AAIHTIDA 261


>gi|308187972|ref|YP_003932103.1| exodeoxyribonuclease V beta chain [Pantoea vagans C9-1]
 gi|308058482|gb|ADO10654.1| exodeoxyribonuclease V beta chain [Pantoea vagans C9-1]
          Length = 1179

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA AE+  R+ E 
Sbjct: 21  LIEASAGTGKTFTIGLLYLRLLLGLGGENAYSRPLSVEEILVVTFTEAATAELRGRIREN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S+     Q       D+S+A   L+          + TIH FC+ ++ 
Sbjct: 81  IHQLRLACIRGKSSNPMH-QLLLEQMPDLSQAAAQLLAAERQMDEAAIFTIHGFCQRMLN 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ +     + ++EQ+  L++++       
Sbjct: 140 LNAFESGMLFEQELIEDEQA--LLKQSTADFWRR 171


>gi|300936256|ref|ZP_07151189.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 21-1]
 gi|300458581|gb|EFK22074.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 21-1]
          Length = 1180

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|291447594|ref|ZP_06586984.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350541|gb|EFE77445.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 759

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ET D +       ++ +A        V A AG+GKT  +  R+   + A  
Sbjct: 26  HSTLFPQVPETPDAVLDGLDPEQREVALALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 85

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P+T+L +T T  AA EM  R+ + + A    +    SA + ++Q   P        R 
Sbjct: 86  LQPATVLAVTFTNRAAGEMRGRLRQ-LGATGVQARTFHSAALRQLQYFWPKAVGGELPRL 144

Query: 120 LLITI 124
           L   +
Sbjct: 145 LERKV 149


>gi|307719090|ref|YP_003874622.1| hypothetical protein STHERM_c14090 [Spirochaeta thermophila DSM
           6192]
 gi|306532815|gb|ADN02349.1| hypothetical protein STHERM_c14090 [Spirochaeta thermophila DSM
           6192]
          Length = 1008

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 42/157 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T +++ +         V A  G+GKT +LV RV RL+        +  L  T+ AA E+ 
Sbjct: 466 TGAQREVVEAGREQLCVVAGPGAGKTRVLVGRVARLVEQGE--GGITVLAFTRKAAEEIR 523

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  +                                            G+ V T HA+
Sbjct: 524 ERLRGVAGG----------------------------------------EGVWVGTFHAW 543

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               + +F  EA   +   + + ++ + + EEA +  
Sbjct: 544 AYECLVRFHREAGYGAPPVVLEGDERRVVWEEACRRV 580


>gi|315296259|gb|EFU55566.1| UvrD/REP helicase [Escherichia coli MS 16-3]
          Length = 715

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMHERIRERLHTEDITARTFHALALHIIQ 315


>gi|281179845|dbj|BAI56175.1| exonuclease V beta subunit [Escherichia coli SE15]
          Length = 1180

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|83644830|ref|YP_433265.1| UvrD/REP helicase family protein [Hahella chejuensis KCTC 2396]
 gi|83632873|gb|ABC28840.1| UvrD/REP helicase family protein [Hahella chejuensis KCTC 2396]
          Length = 631

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           D++S    EQ  A +  T +  V A AGSGKT ++  +   L+L   A P +++ +T T 
Sbjct: 3   DILSYLNEEQFKAVNATTGATLVLAGAGSGKTRVVTYKAAHLILNEKALPKSIILVTFTN 62

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            AA EM  R+ E+I   +         ++      KP+       R
Sbjct: 63  KAANEMRSRLGELIGPIAKTIHIGTFHKLFLDLILKPSADRPVTQR 108


>gi|296270933|ref|YP_003653565.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093720|gb|ADG89672.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1074

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 58/193 (30%), Gaps = 47/193 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++ +         V A  G+GKT  +V+ V+  +      P  +L LT ++ AA E+  R
Sbjct: 26  QRAVVEHEGGPLLVLAGPGTGKTTTIVEAVVHRVERRGIAPERILVLTFSRKAAEELRER 85

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +   +                                            T H +  
Sbjct: 86  ITARLQRTTRSPLA--------------------------------------FTFHGYAY 107

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           A++++  +         +    +  +L+E   +  L   + D          E+L+    
Sbjct: 108 ALLRRAAVLRGEPP-PRLLTAPE--RLLE--IRRLLQGELEDGARHWPAEMRELLKT--- 159

Query: 202 EDIETLISDIISN 214
                 + D +S 
Sbjct: 160 RGFAQELLDFLSR 172


>gi|119715744|ref|YP_922709.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536405|gb|ABL81022.1| UvrD/REP helicase [Nocardioides sp. JS614]
          Length = 1060

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 69/211 (32%), Gaps = 54/211 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++ +   P     V A  G+GKT  LV+ ++  + +  A P  +L LT ++ AA ++  R
Sbjct: 10  QRRVVDHPGGPLLVLAGPGTGKTTTLVEAIVDRIESRGAKPDEVLALTFSRKAAEQLRDR 69

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V   +      +                                         T H+F  
Sbjct: 70  VTARLGRTMSTTMS--------------------------------------STFHSFAY 91

Query: 142 AIMQQFP----LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE-------LKK 190
           A+++++      EA +     +    +   ++ E       S++  ++           +
Sbjct: 92  ALIRRYSPAELYEAPL----RLLSAPEQDVVLRELLTDHPESVVWPDSLARALGTRGFAR 147

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLI 221
             + +L  + ++ ++ +    +     L   
Sbjct: 148 EVHSVLSRAREKGLDGVALQALGEAEGLPEY 178


>gi|218701534|ref|YP_002409163.1| exonuclease V subunit beta [Escherichia coli IAI39]
 gi|218371520|emb|CAR19358.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           IAI39]
          Length = 1180

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|300783060|ref|YP_003763351.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
 gi|299792574|gb|ADJ42949.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
          Length = 1080

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 19/176 (10%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E ++ + L   T  +  + + P   + V A AG+GKT  +  RV+ L+      P  +L 
Sbjct: 14  ELADALGLHRPTPEQATVIAAPVEPSLVVAGAGAGKTETMAARVVWLVANGIVSPDRVLG 73

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+ AA ++           + L     S  + ++      +S +             
Sbjct: 74  LTFTRKAARQLGE------RVRARLRRLAGSGLLDRLDPTGGLRSTV------------V 115

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            G   V T HA+   ++ +  L   +     +  E  S ++      +    +  D
Sbjct: 116 AGEPTVLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQIAHRVVSTWDNELDTD 171


>gi|238751473|ref|ZP_04612965.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia rohdei ATCC 43380]
 gi|238710340|gb|EEQ02566.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia rohdei ATCC 43380]
          Length = 1194

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHIL---------VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +                         +L +T T+AA  E+  R+ + 
Sbjct: 6   LIEASAGTGKTFTIGVLYLRLLLGLGGAAAFQRPLMVEEILVVTFTEAATEELRGRIRDN 65

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I          +S +           +D+S+A   L+          + TIH FC+ ++ 
Sbjct: 66  IHELRIACVRGVSDDPMHT-ALLAEITDLSEAAAQLLAAERQMDEAAIYTIHGFCQRMLA 124

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F     +    L  +A       
Sbjct: 125 NNAFESGI--LFEQTLVQDELPLRRQACADFWRR 156


>gi|268680252|ref|YP_003304683.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618283|gb|ACZ12648.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 681

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 38/156 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           DL    +S+Q           + A AGSGKT  +  R+  LL      +  L LT T  A
Sbjct: 3   DLAMLNESQQDAVKCVDGPVLILAGAGSGKTKTITSRLSYLLSLGIPSANTLTLTFTNKA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A+EM  R + +I +                              H    +L         
Sbjct: 63  ASEMRERAMAMIGS------------------------------HTYPPLL--------C 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           T H F    ++    +    + F + D +  K++++
Sbjct: 85  TFHKFGLLFLKFHMDKLGRKNSFVVIDTDDKKRILK 120


>gi|227505537|ref|ZP_03935586.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC
           6940]
 gi|227197834|gb|EEI77882.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC
           6940]
          Length = 1069

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T  +  +         V A AG+GKT  +  RV+ L+      P  +L LT T+ AA +
Sbjct: 23  PTPEQARVIEGELGPKLVVAGAGAGKTETMASRVVYLVANGMVAPEKVLGLTFTRKAAQQ 82

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ + +              +      +P  +            LE     KV T  
Sbjct: 83  LEQRIRKQLIK------------LRDSGIVQPGTAA--------AEALENIAP-KVATYD 121

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           ++   +++++ L   +     I  + +   +  +  
Sbjct: 122 SYAGDLVREYGLLMPVEPTARIITDAERYAIAHDVV 157


>gi|21223557|ref|NP_629336.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714476|emb|CAC01318.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 785

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80
            ++ +A+       V A AG+GKT  +  R+   + A    PS++L +T T  AA EM  
Sbjct: 77  EQREVATALRGPVCVLAGAGTGKTRAITHRIAYGVRAGILQPSSVLAVTFTNRAAGEMRG 136

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           R+ + + A    +    SA + ++Q   P  
Sbjct: 137 RLRQ-LGASGVQARTFHSAALRQLQYFWPKA 166


>gi|331648580|ref|ZP_08349668.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M605]
 gi|331042327|gb|EGI14469.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M605]
          Length = 1183

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|293416064|ref|ZP_06658704.1| exodeoxyribonuclease V [Escherichia coli B185]
 gi|291432253|gb|EFF05235.1| exodeoxyribonuclease V [Escherichia coli B185]
          Length = 1183

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+SDI
Sbjct: 194 QALLSDI 200


>gi|324009894|gb|EGB79113.1| UvrD/REP helicase [Escherichia coli MS 57-2]
          Length = 715

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P  +
Sbjct: 216 YADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASPEQI 275

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
           L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 276 LLLAFGRKAAEEMHERIRERLHTEDITARTFHALALHIIQ 315


>gi|330908872|gb|EGH37386.1| exodeoxyribonuclease 5 beta chain [Escherichia coli AA86]
          Length = 1180

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|91212215|ref|YP_542201.1| exonuclease V subunit beta [Escherichia coli UTI89]
 gi|91073789|gb|ABE08670.1| exodeoxyribonuclease V beta chain [Escherichia coli UTI89]
          Length = 1183

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|303242289|ref|ZP_07328776.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
 gi|302590199|gb|EFL59960.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
          Length = 706

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 57/218 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           I+  +      +     A V A  GSGKT ++  R+  L+L     P  +L LT  KAA 
Sbjct: 12  INLNQQHMQAVNHVNGHALVLAGPGSGKTTVITARIACLILECGVKPENILTLTFNKAAR 71

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM +R  +I                                        +  G +   T
Sbjct: 72  AEMEYRFNKIYGT-------------------------------------DIGGKVHFAT 94

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+FC+ I++ +             +  Q K L     +  +     +N  ++ +  Y+ 
Sbjct: 95  MHSFCKRIVRDY-------------ENRQGKWLKMIEGEEKIE----ENKRKIIRGLYQQ 137

Query: 196 LEIS--NDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
           +  S  ND+++E LI++I   +  +   F  +++  + 
Sbjct: 138 INNSKINDDELENLINEIGFVKNKMIKDFENYNFSAKN 175


>gi|218559832|ref|YP_002392745.1| exonuclease V subunit beta [Escherichia coli S88]
 gi|218366601|emb|CAR04355.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli S88]
 gi|294491122|gb|ADE89878.1| exodeoxyribonuclease V, beta subunit [Escherichia coli IHE3034]
 gi|315289392|gb|EFU48787.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 110-3]
 gi|323951722|gb|EGB47597.1| exodeoxyribonuclease V [Escherichia coli H252]
          Length = 1180

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|117625073|ref|YP_854061.1| exonuclease V subunit beta [Escherichia coli APEC O1]
 gi|115514197|gb|ABJ02272.1| exodeoxyribonuclease V beta chain [Escherichia coli APEC O1]
          Length = 1180

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|220913220|ref|YP_002488529.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
 gi|219860098|gb|ACL40440.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
          Length = 717

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSH 80
            ++ +AS       V A AG+GKT  +  R+   + +  + P  LL +T T  AAAEM  
Sbjct: 29  EQREVASTLNGPLCVLAGAGTGKTRAITHRIAYGVHSGVYTPQRLLAVTFTARAAAEMRS 88

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQT 135
           R+ + + A +  +    +A + ++Q   P     +  +   H   T+ E    L++ T
Sbjct: 89  RLRD-LGAGNVQARTFHAAALRQLQFFWPQAVGGTLPNLLEHKAQTLAEAARRLRLST 145


>gi|194015021|ref|ZP_03053638.1| YjcD [Bacillus pumilus ATCC 7061]
 gi|194014047|gb|EDW23612.1| YjcD [Bacillus pumilus ATCC 7061]
          Length = 770

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 4   HNSFQEHSETIDL---ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           H    E + TIDL   I+ +  +    +       V A AGSGKT +L  R   L+  + 
Sbjct: 123 HLEENEQAHTIDLFPHITFSTPQLQAVTHKDGPMLVLAGAGSGKTRVLTARAAYLMSHHH 182

Query: 61  HP-STLLCLTHTKAAAAEMSHRVLE 84
            P   +L +T T  A++EM  R+ +
Sbjct: 183 IPAHHILLVTFTTKASSEMKERLRK 207


>gi|157691896|ref|YP_001486358.1| UvrD Rep family helicase [Bacillus pumilus SAFR-032]
 gi|157680654|gb|ABV61798.1| possible UvrD Rep family helicase [Bacillus pumilus SAFR-032]
          Length = 770

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 4   HNSFQEHSETIDL---ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           H    E + TIDL   I+ +  +    +       V A AGSGKT +L  R   L+  + 
Sbjct: 123 HLEENEQAHTIDLFPHITFSTPQLQAVTHKDGPMLVLAGAGSGKTRVLTARAAYLMSHHH 182

Query: 61  HP-STLLCLTHTKAAAAEMSHRVLE 84
            P   +L +T T  A++EM  R+ +
Sbjct: 183 IPAHHILLVTFTTKASSEMKERLRK 207


>gi|209972997|ref|YP_002300444.1| gp34.33 [Bacillus phage SPO1]
 gi|209871317|gb|ACI91073.1| gp34.33 [Bacillus phage SPO1]
          Length = 978

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 37/74 (50%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           LI    S+            ++A AGSGKT +L  R+  +L        +LC T+TK A 
Sbjct: 29  LIGLNNSQLRAVLTLEGPVQINAVAGSGKTRVLTSRIAYMLSTGIKARHILCTTYTKKAT 88

Query: 76  AEMSHRVLEIITAW 89
            EM+ R+ ++I++ 
Sbjct: 89  QEMTERLSKLISSL 102


>gi|332111484|gb|EGJ11467.1| ATP-dependent exoDNAse beta subunit [Rubrivivax benzoatilyticus
           JA2]
          Length = 1211

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 34  AWVSANAGSGKTH-ILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII------ 86
           A V A+AG+GKT  +    +  LL        +L +T T AA  E+  R+   +      
Sbjct: 20  ALVEASAGTGKTWNLCGLFLRLLLERRLEVQQVLVVTFTNAATGELRERIRARLVDVLAA 79

Query: 87  --TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                + L+D  +S  +  ++  +   +D ++ R  +   L+T     + TIH FC+  +
Sbjct: 80  LDGRPAALADPFVSGLLDALRRPEVGLTD-TEMRARVDRALQTFDEAAIFTIHGFCQRAL 138

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
              P  + +     + D+     L+ E         +      L     E+L    D   
Sbjct: 139 ADAPFASAMPLRQELGDD---AALVREVVFDFWRRHVAGG--TLPAGVAELLLSRGDTP- 192

Query: 205 ETLISDIISNRTALKL 220
                +++  R+A  L
Sbjct: 193 -EAWVELVRRRSAKPL 207


>gi|158320846|ref|YP_001513353.1| UvrD/REP helicase [Alkaliphilus oremlandii OhILAs]
 gi|158141045|gb|ABW19357.1| UvrD/REP helicase [Alkaliphilus oremlandii OhILAs]
          Length = 678

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 47/217 (21%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
            + Q   +QL A         V A  GSGKT ++  RV  L+       + +L ++ TKA
Sbjct: 5   YLKQLNPQQLEAVQHFEGPCMVYAGPGSGKTTVITHRVGYLIDHYKVDANKILVISFTKA 64

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R  E    +S     +                                     
Sbjct: 65  AADEMKSRFEESYQYFSSSDKNV-----------------------------------SF 89

Query: 134 QTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            T H+    I++ +            I DE +   +I+   K+   +I  + +++L K  
Sbjct: 90  GTFHSTFFKILRSYYRYNLG-----NILDEGEKIGVIKNIVKTL--NIGNELDDDLIKDI 142

Query: 193 YEILEI--SNDEDIETLISDIISNRTALKLIFFFFSY 227
              + +  SN  D +    + IS     +++F + +Y
Sbjct: 143 ILDVGLFKSNILDQDNFTPNSISKEDFERVVFSYETY 179


>gi|313117106|ref|YP_004038230.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM
           11551]
 gi|312295058|gb|ADQ69094.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM
           11551]
          Length = 1180

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 29/192 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D +S    ++L          V A AG+GKT  L  RV  L+        +L +T T+ A
Sbjct: 428 DDLSLNAEQELAVYRNDIHNQVIAGAGTGKTFSLSCRVKYLVEEGVSEDDILAMTFTRKA 487

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EMS R+ E+       +  + S     +    P    +     L              
Sbjct: 488 ATEMSDRLDEMFDISGVETSTLHSFGNRALNEIDPTLVQIEDQSRLREV----------- 536

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
                   +++                +++ +K  +E          L ++++ ++ F  
Sbjct: 537 ------GRLIRSLYQA-----------DQEFRKHYDEFL-ELYKEANLKDDDKERRDFLN 578

Query: 195 ILEISNDEDIET 206
            L   +D  +  
Sbjct: 579 SLRYKSDTTLRG 590


>gi|266623215|ref|ZP_06116150.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
 gi|288865014|gb|EFC97312.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
          Length = 614

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 50/217 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
           +++   +       V A  GSGKT  +  R+  L    + +PS +L +T TKAAA EM  
Sbjct: 10  AQKAAVTHDKGPMLVLAGPGSGKTFTITHRIKYLTEECSVNPSGILVITFTKAAATEMKE 69

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R   +                                         TP  +   T HA  
Sbjct: 70  RYESLCGG--------------------------------------TPSSVSFGTFHAIF 91

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             I++ F    +      I  +EQ  + I E  ++    + +++  E   A    +    
Sbjct: 92  FRILK-FAYRYDAR---NIVRDEQRMQYIRELMET--NRVEVEDEAEFVSAVLSEISSVK 145

Query: 201 DEDIETLISDIISN---RTALKLIFFFFSYLWRRKII 234
            E I   ++   +        K ++  +    RR  +
Sbjct: 146 GEMIH--LNHYYAKNCSEEVFKKLYSGYEERLRRANL 180


>gi|161870830|ref|YP_001600003.1| DNA helicase II [Neisseria meningitidis 053442]
 gi|161596383|gb|ABX74043.1| DNA helicase II [Neisseria meningitidis 053442]
          Length = 694

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 39/130 (30%)

Query: 48  LVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
           L  R+  LL    A   +++ +T T  AA EM  R+  +I                    
Sbjct: 2   LTTRIAWLLQTGQASVHSIMAVTFTNKAAKEMQTRLGAMIPV------------------ 43

Query: 107 KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
                                   + + T H  C   ++    +A + S F I D     
Sbjct: 44  --------------------NVRAMWLGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQL 83

Query: 167 KLIEEAKKST 176
            LI+   KS 
Sbjct: 84  SLIKRLLKSL 93


>gi|290957550|ref|YP_003488732.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647076|emb|CBG70175.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 740

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F    ++ D + +     ++ +A+       V A AG+GKT  +  R+   + A  
Sbjct: 6   HSTLFPRVPDSADAVLEGLDPEQRAVATALHGPVCVLAGAGTGKTRAITHRIAYGVRAGM 65

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             P+++L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 66  LQPASVLAVTFTNRAAGEMRGRLRQ-LGAAGVQARTFHSAALRQLQYFWPKA 116


>gi|296139998|ref|YP_003647241.1| exodeoxyribonuclease V [Tsukamurella paurometabola DSM 20162]
 gi|296028132|gb|ADG78902.1| Exodeoxyribonuclease V [Tsukamurella paurometabola DSM 20162]
          Length = 1110

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +V  + R +    A   + L +T ++AA  E+  R    + A     
Sbjct: 27  VLEASAGTGKTYAIVGLLTRYVAEGLADLGSTLLITFSRAATQELRERARARLVAAEVAL 86

Query: 94  DEILSA-----EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            +  +A     E+ +       +    + R L+   L       + T H FC+ ++    
Sbjct: 87  RDPETARVCGDELIRHLAAASPEEVRVRHRRLVA-ALSDFDAATITTTHGFCQRMLDALG 145

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKST 176
           +  ++     +   E    L++E  +  
Sbjct: 146 MAGDLEPG--VQFVEDIGDLVQEVAEDV 171


>gi|315036417|gb|EFT48349.1| UvrD/REP helicase [Enterococcus faecalis TX0027]
          Length = 597

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 43/160 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAA 75
           ++    EQ    +   + +V+A  GSGKT +L +++    +  +     ++ +T+T  AA
Sbjct: 9   VNDLNLEQKDVVESEDNLYVNACPGSGKTRVLTRKIAYQAIKHDGSLKRIIAITYTNRAA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+     +   + D+I                                  + V T
Sbjct: 69  EEIKERL-----SLLSIDDDI---------------------------------NIWVGT 90

Query: 136 IHAFCEAIMQQFPLEANI---TSHFAIADEEQSKKLIEEA 172
           IH FC   +  +P + N+   +  F I D+   +  + + 
Sbjct: 91  IHQFCLEFI-IYPFKMNLSRVSKGFTIIDDYTQRAYVSQI 129


>gi|312945475|gb|ADR26302.1| DNA helicase IV [Escherichia coli O83:H1 str. NRG 857C]
          Length = 684

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    S  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMHERIRERLHTEDITARTFHSLALHIIQ 284


>gi|256396909|ref|YP_003118473.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363135|gb|ACU76632.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 1134

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 41/131 (31%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAA 76
             +++ +   P     V A  G+GKTH LV+ V+       A   P  +L LT ++ AA+
Sbjct: 30  DPAQRRVVDHPGGPLLVLAGPGTGKTHTLVEAVISKTDPDRAALRPDQVLILTFSRKAAS 89

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+   +                                                T 
Sbjct: 90  ELRDRIGRRLPLSGVAPLA--------------------------------------TTF 111

Query: 137 HAFCEAIMQQF 147
           H+FC A++++F
Sbjct: 112 HSFCYALVRRF 122


>gi|227874457|ref|ZP_03992633.1| possible ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
 gi|227839685|gb|EEJ50139.1| possible ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
          Length = 622

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 77/234 (32%), Gaps = 80/234 (34%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +  T+ ++         A V A  GSGKT +L +R+  LL        +L L+ T+A+
Sbjct: 16  EFMEFTREQRQAIETGAEKALVVAGPGSGKTTVLTERLCTLLERGVPAEKILLLSFTRAS 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R    +   +                                      G  +  
Sbjct: 76  SKEMEERFFRKMGIRA--------------------------------------GRPRFS 97

Query: 135 TIHAFCEAIMQ---------------------QFPLEANITSHFAIADEEQSKK---LIE 170
           TIHA C ++++                     Q+ LE        I  EE  +    LI 
Sbjct: 98  TIHALCFSLLREDLGYKKEDLVNLYEKMDWLSQYYLEKG------ILREEVQELLPGLIA 151

Query: 171 EA-------KKSTLASIMLDNNEELKKAFYEILEISNDE----DIETLISDIIS 213
           +        ++  +A +  +  E+   A Y   E S  +    D E L+ +++ 
Sbjct: 152 QISYFKSIGERERIAYLQKEKQEDFL-ALYHFYEESRKKRGKLDFEDLLLEVLR 204


>gi|331643504|ref|ZP_08344635.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H736]
 gi|331036975|gb|EGI09199.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H736]
          Length = 1183

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|296424640|ref|XP_002841855.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638105|emb|CAZ86046.1| unnamed protein product [Tuber melanosporum]
          Length = 1031

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 39/152 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKA 73
           L     +++L  ++P+    + A  GSGKT  L  R   LL    +  P  ++  T T  
Sbjct: 14  LAGLNNAQRLAVTNPSSVVQILAPPGSGKTRTLTSRAAWLLCPPQSLDPRNVIVATFTVK 73

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R+ +++                                          G L +
Sbjct: 74  AAREMKERISKLVGNGVE-------------------------------------GRLVL 96

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
            T H      + ++    +I   + IAD   S
Sbjct: 97  GTFHCIARKYLVKYRHLVDIKPGWGIADSSDS 128


>gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 894

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 41/169 (24%)

Query: 16  LISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +     QL   +  +    V A  G GKTHIL +R+            +LCLT T  A
Sbjct: 3   MNNNLDKSQLPVVEANKGYHLVLAPPGCGKTHILAERIKNARAEGVAFKDMLCLTFTNRA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+  ++                                       +    L++ 
Sbjct: 63  AREMESRIESLLHE-------------------------------------DDISELQIG 85

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            +H FC   +     E  + +  +I D+E++  +I + +      ++ D
Sbjct: 86  NVHHFCSKFL---FEENKVPADASIIDDEEAVSIIADYRNEDDERVIGD 131


>gi|302524541|ref|ZP_07276883.1| DNA helicase II [Streptomyces sp. AA4]
 gi|302433436|gb|EFL05252.1| DNA helicase II [Streptomyces sp. AA4]
          Length = 699

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 5/133 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           S Q  +  +D +     ++  A+ P     V A AG+GKT  +  R+  L+ +       
Sbjct: 9   SRQSRASLLDGLD--PEQRAAAAAPRGPVCVLAGAGTGKTRTITHRIAHLVRSGHVAAGQ 66

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLI 122
           +L +T T  AA EM  R+  +    +           ++     +           +   
Sbjct: 67  VLAVTFTTRAAGEMRTRLRGLGVDAAQALTFHAAARRQLRYFWPRVVGDRPWDLIDNKFR 126

Query: 123 TILETPGGLKVQT 135
            + +    +++ T
Sbjct: 127 LVAQAAQRVRLST 139


>gi|256024679|ref|ZP_05438544.1| exonuclease V subunit beta [Escherichia sp. 4_1_40B]
 gi|301645213|ref|ZP_07245166.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 146-1]
 gi|307139504|ref|ZP_07498860.1| exonuclease V subunit beta [Escherichia coli H736]
 gi|301076483|gb|EFK91289.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 146-1]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|329667337|gb|AEB93285.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 1142

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 28/168 (16%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+ + I+                      ++ +       L + L       + TI 
Sbjct: 1   MKERIKQKIS----------------------DQIEKEPNNQFLRSQLLDVDTANISTID 38

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +FC  ++++F    ++   F++  +E   +L++E     +    L+ N++  + FY+   
Sbjct: 39  SFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYDNFS 98

Query: 198 ISND-EDIETLISDIISNRTALKLIFFFFS-----YLWRRKIIEKSLW 239
              D E    L+  + +          F +     Y  +  +IE  LW
Sbjct: 99  GDRDAEGARNLLLQLYNTVVTEPNYEKFLNNLPNFYQVQDDLIESDLW 146


>gi|218557861|ref|YP_002390774.1| DNA helicase IV [Escherichia coli S88]
 gi|218364630|emb|CAR02316.1| DNA helicase IV [Escherichia coli S88]
          Length = 684

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMHERIRERLHTEDITARTFHALALHIIQ 284


>gi|297157447|gb|ADI07159.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
           BCW-1]
          Length = 763

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
              ++ +A+       V A AG+GKT  +  R+   + A    P+++L +T T  AA EM
Sbjct: 34  DPEQREVATALYGPVCVLAGAGTGKTRAITHRIAYGVRAGVFQPASVLAVTFTNRAAGEM 93

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             R+ + + A    +    SA + ++Q   P  
Sbjct: 94  RGRLRQ-LGAGGVQARTFHSAALRQLQYFWPKA 125


>gi|282878339|ref|ZP_06287131.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
 gi|281299525|gb|EFA91902.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
          Length = 904

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 29/220 (13%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +Q +         V A  G GKT IL +R+ R          +LCLT T  AA  M  R+
Sbjct: 19  QQAVIQAEGGYHLVLAPPGCGKTQILTERIRRAHEQGMPFDKMLCLTFTNRAARGMKERI 78

Query: 83  LEIITAWSH---------------LSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
              I                    L D  L    + +   +   S +++ R      ++ 
Sbjct: 79  EAHIADEGVNEVYVGNVHRFCSKFLFDNSLVPAESSVIDDEDAFSILARYRDEDEYAVQA 138

Query: 128 PGGLK---VQTIH--AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-----STL 177
               K   ++  H   F   ++ + P +  +      A +  + + + + ++      T+
Sbjct: 139 NYRAKSEYIEVFHFAGFIHQLVHEHPKKLRLHPECVTARDVTALRTLCQVQQMEMTPETM 198

Query: 178 ASIML--DNNEELKKAFYEILEISNDEDIETLISDIISNR 215
             +    D  E+L +   E  ++ +  DI  L+  +   R
Sbjct: 199 LDVFTHSDVYEDLIQT--EAYDLGSQRDIGALLKKMEQAR 236


>gi|160888200|ref|ZP_02069203.1| hypothetical protein BACUNI_00608 [Bacteroides uniformis ATCC 8492]
 gi|156862335|gb|EDO55766.1| hypothetical protein BACUNI_00608 [Bacteroides uniformis ATCC 8492]
          Length = 589

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 42/154 (27%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
               EQ  A     S  + A  GSGKT  L  ++   L   N++   ++ +T+T  AA E
Sbjct: 8   DLNPEQENAIFYEDSVLLVACPGSGKTRTLTYKIAYELSKLNSNKQYIIAITYTNRAADE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+                 E+  I  K                       L + TIH
Sbjct: 68  IKERI-----------------ELLGIDTK----------------------QLWIGTIH 88

Query: 138 AFC-EAIMQQFPLEA-NITSHFAIADEEQSKKLI 169
           +FC E I++ + +    +   + I +   ++  +
Sbjct: 89  SFCVEWILKPYHMYIEELKYGYTIINAHDTESYL 122


>gi|22127040|ref|NP_670463.1| exonuclease V subunit beta [Yersinia pestis KIM 10]
 gi|45442649|ref|NP_994188.1| exonuclease V subunit beta [Yersinia pestis biovar Microtus str.
           91001]
 gi|21960090|gb|AAM86714.1|AE013917_2 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia pestis KIM 10]
 gi|45437515|gb|AAS63065.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia pestis biovar Microtus str.
           91001]
          Length = 1241

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 10  HSETIDLISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH------ 61
            +E I  ++ T  ++L  LA        + A+AG+GKT  +    LRLLL          
Sbjct: 15  AAEGIGTMTPTTPQRLEPLALPLYGERLIEASAGTGKTFTIGVLYLRLLLGLGGDAAFRR 74

Query: 62  ---PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
                 +L +T T+AA  E+  R+ + I          +S +    Q      +D + A 
Sbjct: 75  PLMVEEILVVTFTEAATEELRGRIRDNIHGLRIACVRGVSDDPM-YQALLAEITDWAVAA 133

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
             L+          + TIH FC+ ++     E+ I   F     +    L  +A      
Sbjct: 134 AQLLAAERQMDEAAIYTIHGFCQRMLANNAFESGI--LFEQTLVQDELPLWRQACADFWR 191

Query: 179 S 179
            
Sbjct: 192 R 192


>gi|291524912|emb|CBK90499.1| Superfamily I DNA and RNA helicases [Eubacterium rectale DSM 17629]
 gi|291529053|emb|CBK94639.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 617

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 71/220 (32%), Gaps = 46/220 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++  K++         +  V A  GSGKT ++  R   L+  +   PS +L +T TKAAA
Sbjct: 1   MNFNKAQLGAIEHKDGAMLVLAGPGSGKTAVITHRTKNLITKHHVKPSEILVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R   +      + DE ++                                    T
Sbjct: 61  NEMKERFNSL------MKDERVNVSF--------------------------------GT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            HA    I++             IADE      I E   S       D NE +     EI
Sbjct: 83  FHAVFFTILKYAYRFT----SANIADESVRYGFIREIL-SYYRLEYKDENEFIGNLLAEI 137

Query: 196 LEISNDE-DIETLISDIISNRTALKLIFFFFSYLWRRKII 234
             I N   DIE   S +       + I+  +    +   +
Sbjct: 138 SLIKNSRIDIENFYSGVCGE-EIFRDIYKKYETRLKENRL 176


>gi|221309025|ref|ZP_03590872.1| hypothetical protein Bsubs1_06531 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313350|ref|ZP_03595155.1| hypothetical protein BsubsN3_06457 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318274|ref|ZP_03599568.1| hypothetical protein BsubsJ_06401 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322547|ref|ZP_03603841.1| hypothetical protein BsubsS_06507 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81555904|sp|O31626|YJCD_BACSU RecName: Full=Putative ATP-dependent DNA helicase yjcD
          Length = 759

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
               +     +    ++      V A AGSGKT +L  R   ++      P  +L +T T
Sbjct: 130 LFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPPENMLLVTFT 189

Query: 72  KAAAAEMSHRVLEIIT 87
             A AEM  R+     
Sbjct: 190 TKAVAEMKERMANQYG 205


>gi|300931283|ref|ZP_07146623.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 187-1]
 gi|300460937|gb|EFK24430.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 187-1]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|301026211|ref|ZP_07189677.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 196-1]
 gi|299879803|gb|EFI88014.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 196-1]
          Length = 1170

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|256785335|ref|ZP_05523766.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 716

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
              ++ +A+       V A AG+GKT  +  R+   + A    PS++L +T T  AA EM
Sbjct: 6   DPEQREVATALRGPVCVLAGAGTGKTRAITHRIAYGVRAGILQPSSVLAVTFTNRAAGEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             R+ + + A    +    SA + ++Q   P  
Sbjct: 66  RGRLRQ-LGASGVQARTFHSAALRQLQYFWPKA 97


>gi|162138455|ref|YP_540044.2| DNA helicase IV [Escherichia coli UTI89]
 gi|306812591|ref|ZP_07446784.1| DNA helicase IV [Escherichia coli NC101]
 gi|294493600|gb|ADE92356.1| helicase IV [Escherichia coli IHE3034]
 gi|305853354|gb|EFM53793.1| DNA helicase IV [Escherichia coli NC101]
 gi|307627618|gb|ADN71922.1| DNA helicase IV [Escherichia coli UM146]
 gi|323953335|gb|EGB49201.1| UvrD/REP helicase [Escherichia coli H252]
 gi|323958262|gb|EGB53971.1| UvrD/REP helicase [Escherichia coli H263]
          Length = 684

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMHERIRERLHTEDITARTFHALALHIIQ 284


>gi|187733096|ref|YP_001881439.1| exonuclease V subunit beta [Shigella boydii CDC 3083-94]
 gi|187430088|gb|ACD09362.1| exodeoxyribonuclease V, beta subunit [Shigella boydii CDC 3083-94]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|309703175|emb|CBJ02509.1| exodeoxyribonuclease V beta subunit [Escherichia coli ETEC H10407]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|209920268|ref|YP_002294352.1| exonuclease V subunit beta [Escherichia coli SE11]
 gi|209913527|dbj|BAG78601.1| exonuclease V beta subunit [Escherichia coli SE11]
 gi|324016326|gb|EGB85545.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 117-3]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|324119859|gb|EGC13738.1| exodeoxyribonuclease V [Escherichia coli E1167]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|307721687|ref|YP_003892827.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
 gi|306979780|gb|ADN09815.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
          Length = 682

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 40/161 (24%)

Query: 18  SQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++    Q  A         + A AGSGKT  +V R+  L+       S  L LT T  AA
Sbjct: 6   NKLNESQSAAVKQTEGPVLILAGAGSGKTTTIVSRLAYLIEGVGIPASNTLTLTFTNKAA 65

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R L +I   ++                                           T
Sbjct: 66  KEMKERSLSMIENVAYPPLL--------------------------------------CT 87

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            H F    ++         ++F + D +  K++I++     
Sbjct: 88  FHKFGLLFLKFNIHLLGRANNFVVIDTDDKKRIIKKINSEL 128


>gi|290476676|ref|YP_003469581.1| exonuclease V subunit beta [Xenorhabdus bovienii SS-2004]
 gi|289176014|emb|CBJ82817.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Xenorhabdus bovienii
           SS-2004]
          Length = 1205

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRL---------LLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRL              +   +L +T T+AA  E+  R+ E 
Sbjct: 22  LIEASAGTGKTYTIGLLYLRLLLGLGGDAAFFRPLNVEEILVVTFTEAATDELRGRIREN 81

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNK-SDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I           + E   +  +  ++  D + A   L+          + TIH FC+ ++
Sbjct: 82  IHQLRLACIREGTEESDPVYQQLLDQIPDRASAASWLLAAERQMDEAAIYTIHGFCQRML 141

Query: 145 QQFPLEANITSHFAIADEE 163
                E+ +     +  +E
Sbjct: 142 VHNAFESGVLFDQTLIQDE 160


>gi|194439867|ref|ZP_03071931.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 101-1]
 gi|253772326|ref|YP_003035157.1| exonuclease V subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162748|ref|YP_003045856.1| exonuclease V subunit beta [Escherichia coli B str. REL606]
 gi|194421204|gb|EDX37227.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 101-1]
 gi|242378368|emb|CAQ33146.1| recB, subunit of RecBCD [Escherichia coli BL21(DE3)]
 gi|253323370|gb|ACT27972.1| exodeoxyribonuclease V, beta subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974649|gb|ACT40320.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli B
           str. REL606]
 gi|253978814|gb|ACT44484.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           BL21(DE3)]
 gi|323960737|gb|EGB56360.1| exodeoxyribonuclease V [Escherichia coli H489]
 gi|323971651|gb|EGB66881.1| exodeoxyribonuclease V [Escherichia coli TA007]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|157157251|ref|YP_001464155.1| exonuclease V subunit beta [Escherichia coli E24377A]
 gi|300923197|ref|ZP_07139252.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 182-1]
 gi|301326148|ref|ZP_07219534.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 78-1]
 gi|157079281|gb|ABV18989.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E24377A]
 gi|300420506|gb|EFK03817.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 182-1]
 gi|300847113|gb|EFK74873.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 78-1]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|254037871|ref|ZP_04871929.1| exodeoxyribonuclease subunit V beta [Escherichia sp. 1_1_43]
 gi|226839495|gb|EEH71516.1| exodeoxyribonuclease subunit V beta [Escherichia sp. 1_1_43]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|16130724|ref|NP_417297.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89109603|ref|AP_003383.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
           K-12 substr. W3110]
 gi|157162272|ref|YP_001459590.1| exonuclease V subunit beta [Escherichia coli HS]
 gi|170018937|ref|YP_001723891.1| exonuclease V subunit beta [Escherichia coli ATCC 8739]
 gi|170082388|ref|YP_001731708.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188492424|ref|ZP_02999694.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 53638]
 gi|238901955|ref|YP_002927751.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           BW2952]
 gi|256019384|ref|ZP_05433249.1| exonuclease V subunit beta [Shigella sp. D9]
 gi|300950553|ref|ZP_07164460.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 116-1]
 gi|300958138|ref|ZP_07170295.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 175-1]
 gi|119668|sp|P08394|EX5B_ECOLI RecName: Full=Exodeoxyribonuclease V beta chain; AltName:
           Full=Exodeoxyribonuclease V 135 kDa polypeptide
 gi|56966626|pdb|1W36|B Chain B, Recbcd:dna Complex
 gi|56966629|pdb|1W36|E Chain E, Recbcd:dna Complex
 gi|266618790|pdb|3K70|B Chain B, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
 gi|266618793|pdb|3K70|E Chain E, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
 gi|5923820|gb|AAD56369.1|AF179304_1 RecB2109 [Escherichia coli]
 gi|42682|emb|CAA28250.1| unnamed protein product [Escherichia coli]
 gi|882712|gb|AAB40467.1| exonuclease V subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|1789183|gb|AAC75859.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85675636|dbj|BAE76889.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
           K12 substr. W3110]
 gi|157067952|gb|ABV07207.1| exodeoxyribonuclease V, beta subunit [Escherichia coli HS]
 gi|169753865|gb|ACA76564.1| exodeoxyribonuclease V, beta subunit [Escherichia coli ATCC 8739]
 gi|169890223|gb|ACB03930.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188487623|gb|EDU62726.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 53638]
 gi|238861053|gb|ACR63051.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           BW2952]
 gi|260448132|gb|ACX38554.1| exodeoxyribonuclease V, beta subunit [Escherichia coli DH1]
 gi|300315160|gb|EFJ64944.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 175-1]
 gi|300450121|gb|EFK13741.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 116-1]
 gi|315137424|dbj|BAJ44583.1| exonuclease V subunit beta [Escherichia coli DH1]
 gi|323935821|gb|EGB32124.1| exodeoxyribonuclease V [Escherichia coli E1520]
 gi|323941572|gb|EGB37753.1| exodeoxyribonuclease V [Escherichia coli E482]
 gi|332102855|gb|EGJ06201.1| exonuclease V (RecBCD complex) beta subunit [Shigella sp. D9]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|24213785|ref|NP_711266.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|45658426|ref|YP_002512.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194613|gb|AAN48284.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|45601669|gb|AAS71149.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 674

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 46/172 (26%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
             ++           + A AGSGKT ++  R+  L+         ++ L+ T  +A EM 
Sbjct: 5   PEQEKAVRHVDGPILIFAGAGSGKTRVISNRIAHLIENAGVPAGKIVALSFTNKSAREME 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV ++I                                       +   G+ + T H+ 
Sbjct: 65  ERVRKMIPR-------------------------------------QKLKGIVLSTFHSL 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              I+++          F + ++           +  L ++++ N  ELKKA
Sbjct: 88  GLNILKKHIGLLGYKHPFLLMNQNDQ--------EGFLTTLLIANKVELKKA 131


>gi|15923403|ref|NP_370937.1| hypothetical protein SAV0413 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156978741|ref|YP_001441000.1| hypothetical protein SAHV_0410 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|221141393|ref|ZP_03565886.1| hypothetical protein SauraJ_07103 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|255005210|ref|ZP_05143811.2| hypothetical protein SauraM_02045 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257878681|ref|ZP_05658334.1| UvrD/REP helicase [Enterococcus faecium 1,230,933]
 gi|289168158|ref|YP_003446427.1| hypothetical protein smi_1319 [Streptococcus mitis B6]
 gi|294615439|ref|ZP_06695311.1| UvrD/REP helicase subfamily [Enterococcus faecium E1636]
 gi|304380425|ref|ZP_07363104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|14246181|dbj|BAB56575.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720876|dbj|BAF77293.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257812909|gb|EEV41667.1| UvrD/REP helicase [Enterococcus faecium 1,230,933]
 gi|269939991|emb|CBI48366.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|288907725|emb|CBJ22562.1| conserved hypothetical protein [Streptococcus mitis B6]
 gi|291591721|gb|EFF23358.1| UvrD/REP helicase subfamily [Enterococcus faecium E1636]
 gi|302750303|gb|ADL64480.1| UvrD/REP helicase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304341032|gb|EFM06953.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|323465474|gb|ADX77627.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
 gi|329313130|gb|AEB87543.1| UvrD/REP helicase [Staphylococcus aureus subsp. aureus T0131]
          Length = 597

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 43/160 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAA 75
           ++    EQ    +   + +V+A  GSGKT +L +++    +  +     ++ +T+T  AA
Sbjct: 9   VNDLNLEQKDVVESEDNLYVNACPGSGKTRVLTRKIAYQAIKHDGSLKRIIAITYTNRAA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+     +   + D+I                                  + V T
Sbjct: 69  EEIKERL-----SLLSIDDDI---------------------------------NIWVGT 90

Query: 136 IHAFCEAIMQQFPLEANI---TSHFAIADEEQSKKLIEEA 172
           IH FC   +  +P + N+   +  F I D+   +  + + 
Sbjct: 91  IHQFCLEFI-IYPFKMNLSRVSKGFTIIDDYTQRAYVSQI 129


>gi|331657029|ref|ZP_08357991.1| helicase IV (75 kDa helicase) [Escherichia coli TA206]
 gi|222032686|emb|CAP75425.1| Helicase IV [Escherichia coli LF82]
 gi|331055277|gb|EGI27286.1| helicase IV (75 kDa helicase) [Escherichia coli TA206]
          Length = 684

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMHERIRERLHTEDITARTFHALALHIIQ 284


>gi|170684073|ref|YP_001744988.1| exonuclease V subunit beta [Escherichia coli SMS-3-5]
 gi|170521791|gb|ACB19969.1| exodeoxyribonuclease V, beta subunit [Escherichia coli SMS-3-5]
          Length = 1170

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|30064162|ref|NP_838333.1| exonuclease V subunit beta [Shigella flexneri 2a str. 2457T]
 gi|56480189|ref|NP_708611.2| exonuclease V subunit beta [Shigella flexneri 2a str. 301]
 gi|30042418|gb|AAP18143.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Shigella flexneri 2a str. 2457T]
 gi|56383740|gb|AAN44318.2| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Shigella flexneri 2a str. 301]
 gi|281602176|gb|ADA75160.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Shigella flexneri 2002017]
 gi|313647883|gb|EFS12329.1| exodeoxyribonuclease V, beta subunit [Shigella flexneri 2a str.
           2457T]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLIVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 905

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 25/228 (10%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           ++    + ++  + +  +         V A  G GKT IL +R+ R          +LCL
Sbjct: 5   QNDNLPNSLTPDQYQTEVIQASGGYHLVLAAPGCGKTQILTERIRRAHEQGISFDEMLCL 64

Query: 69  THTKAAAAEMSHRVLEIITAWSHLS---------------DEILSAEITKIQGKKPNKSD 113
           T T  AA  M  R+   I                      D  L    + +       S 
Sbjct: 65  TFTNRAARGMRERIETHINDEEIAELYVGNVHRFCSKFLFDNSLVPAESSVIDDDDAFSI 124

Query: 114 MSKARHLLITILETPGGLK---VQTIH--AFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           +++ R      ++    LK   ++ +H   F   +    P    +      + +  + + 
Sbjct: 125 LARYRDEDEYAVQHNFRLKKEYIEVLHFAGFIHQLTHHHPKLLRLHPECVTSLDVAALRT 184

Query: 169 I-----EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           +      E    TL  +  + N        +  +I +  DIE L+  +
Sbjct: 185 LCRVQRMELTADTLQEVFKNANTYESLIHSDAYDIGSQHDIEALLRKM 232


>gi|262280779|ref|ZP_06058562.1| ATP-dependent exoDNAse beta subunit [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257679|gb|EEY76414.1| ATP-dependent exoDNAse beta subunit [Acinetobacter calcoaceticus
           RUH2202]
          Length = 1232

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       D
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPRQVIATTFTRAAAAELKSRIRARLVETYRYLD 81

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    ++  +   + D+             + A   L  +++    L V T+ +F +
Sbjct: 82  TKRSFTEHELLMQAEQEPDLLLQHILKSFATRIAYACERLKLVIDQFDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +   ++ +  A Y   E+ + 
Sbjct: 142 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQHQTVIDALYLAGELKSV 199

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 200 DSFVKLVEDSLN 211


>gi|82545121|ref|YP_409068.1| exonuclease V subunit beta [Shigella boydii Sb227]
 gi|81246532|gb|ABB67240.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella boydii
           Sb227]
 gi|332092103|gb|EGI97181.1| exodeoxyribonuclease V, beta subunit [Shigella boydii 3594-74]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|323966801|gb|EGB62232.1| exodeoxyribonuclease V [Escherichia coli M863]
 gi|327251567|gb|EGE63253.1| exodeoxyribonuclease V, beta subunit [Escherichia coli STEC_7v]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|300920325|ref|ZP_07136763.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 115-1]
 gi|300412650|gb|EFJ95960.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 115-1]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|193065093|ref|ZP_03046167.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E22]
 gi|194426185|ref|ZP_03058740.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B171]
 gi|260845482|ref|YP_003223260.1| exonuclease V, beta subunit RecB [Escherichia coli O103:H2 str.
           12009]
 gi|192927224|gb|EDV81844.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E22]
 gi|194415493|gb|EDX31760.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B171]
 gi|257760629|dbj|BAI32126.1| exonuclease V, beta subunit RecB [Escherichia coli O103:H2 str.
           12009]
          Length = 1180

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|323978565|gb|EGB73647.1| exodeoxyribonuclease V [Escherichia coli TW10509]
          Length = 1180

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|218696416|ref|YP_002404083.1| exonuclease V subunit beta [Escherichia coli 55989]
 gi|218353148|emb|CAU99002.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           55989]
          Length = 1180

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|319764580|ref|YP_004128517.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317119141|gb|ADV01630.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 686

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S     QL A         V A AGSGKT ++  ++ RL+     P  +  +T T  A 
Sbjct: 1   MSGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITHKIARLIETGLAPRRIAAITFTNKA- 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                                          ++       +A+ +L           V T
Sbjct: 60  --------------------------AAEMRERAAGLIGRQAKDVL-----------VCT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            HA    ++++      +   F+I D++    ++++  
Sbjct: 83  FHALGVRMVREDGHVLGLKPSFSILDQDDVTGILKDCA 120


>gi|169634534|ref|YP_001708270.1| exonuclease V, beta chain [Acinetobacter baumannii SDF]
 gi|169153326|emb|CAP02437.1| exonuclease V, beta chain [Acinetobacter baumannii]
          Length = 1232

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       D
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPGQVIATTFTRAAAAELKSRIRARLVETHRYLD 81

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    +I  +   +SD+             + A   L  +++    L V T+ +F +
Sbjct: 82  AKRSLTEKEILLQAEQESDLLLQHILKHFATRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +    + +  A Y   E+ + 
Sbjct: 142 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQPQTVIDALYLAGELKSV 199

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 200 DSFVKLVEDSLN 211


>gi|293406309|ref|ZP_06650235.1| recB [Escherichia coli FVEC1412]
 gi|298382045|ref|ZP_06991642.1| exodeoxyribonuclease V beta subunit [Escherichia coli FVEC1302]
 gi|291426315|gb|EFE99347.1| recB [Escherichia coli FVEC1412]
 gi|298277185|gb|EFI18701.1| exodeoxyribonuclease V beta subunit [Escherichia coli FVEC1302]
          Length = 1183

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|238754830|ref|ZP_04616181.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia ruckeri ATCC 29473]
 gi|238706990|gb|EEP99356.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia ruckeri ATCC 29473]
          Length = 1193

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 26/161 (16%)

Query: 35  WVSANAGSGKTHILVQR-------------VLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + A+AG+GKT  +                 LR L        +L +T T+AA  E+  R
Sbjct: 20  LIEASAGTGKTFTIGVLYLRLLLGLGGNAAYLRPLT----VEEILVVTFTEAATEELRGR 75

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   I           SA+       K    D+S A   L+          + TIH FC+
Sbjct: 76  IRNNIHGLRIACVRGESADPMYAILLK-EIPDLSSAAATLLAAERQMDEAAIYTIHGFCQ 134

Query: 142 AIMQQFPLEANITSHFA---IADEEQSKKLIEEAKKSTLAS 179
            ++     E+ I   F    I DE     L  +A       
Sbjct: 135 RMLANNAFESGI--LFEQKLILDE---LPLRRQACADFWRR 170


>gi|218706314|ref|YP_002413833.1| exonuclease V subunit beta [Escherichia coli UMN026]
 gi|300898119|ref|ZP_07116485.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 198-1]
 gi|218433411|emb|CAR14313.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           UMN026]
 gi|284922756|emb|CBG35844.1| exodeoxyribonuclease V beta subunit [Escherichia coli 042]
 gi|300358177|gb|EFJ74047.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 198-1]
          Length = 1180

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|331654302|ref|ZP_08355302.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M718]
 gi|331047684|gb|EGI19761.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M718]
          Length = 1183

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|332087360|gb|EGI92488.1| exodeoxyribonuclease V, beta subunit [Shigella boydii 5216-82]
          Length = 1180

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|301027507|ref|ZP_07190844.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 69-1]
 gi|300395015|gb|EFJ78553.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 69-1]
          Length = 1180

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|116671299|ref|YP_832232.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611408|gb|ABK04132.1| ATP-dependent DNA helicase, Rep family [Arthrobacter sp. FB24]
          Length = 726

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
              ++ +AS       V A AG+GKT  +  R+   + +    P  LL +T T  AAAEM
Sbjct: 36  DDEQREVASTLNGPLCVLAGAGTGKTRAITHRIAYGVHSGVYSPQRLLAVTFTARAAAEM 95

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQT 135
             R+ + +   +  +    +A + ++Q   P     +  +   H    I E    L++ T
Sbjct: 96  RSRLRD-LGVGNVQARTFHAAALRQLQFFWPQAVGGALPNLLDHKAQMIAEAARRLRLST 154


>gi|239906473|ref|YP_002953214.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239796339|dbj|BAH75328.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 624

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 45/217 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +S    +   A   T  A V A  GSGKT  + +R+ RL+      P  +L LT+T+ AA
Sbjct: 1   MSLNAKQLEAAQFHTGIALVVAVPGSGKTKTMTERIGRLVNDHGVAPENILGLTYTRQAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R+  ++   +                                        + + T
Sbjct: 61  EQMRERLELVLHGEA--------------------------------------SRVNLYT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFA----IADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           IH+FC  +++      NI S       +A   +S  + + A    L  I L  +  +   
Sbjct: 83  IHSFCLRLLKSEGRYFNIVSGSEQMTMVATIMRSLGIKDLAIGGVLQDISLAKSNLISP- 141

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
             E +++  ++  +   + +       K I + + + 
Sbjct: 142 -EEFIDLYGEDQSKQKTAMVFKEYEEQKAIRYLYDFD 177


>gi|255767266|ref|NP_389064.2| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|225184893|emb|CAB13039.2| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 717

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
               +     +    ++      V A AGSGKT +L  R   ++      P  +L +T T
Sbjct: 88  LFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPPENMLLVTFT 147

Query: 72  KAAAAEMSHRVLEIIT 87
             A AEM  R+     
Sbjct: 148 TKAVAEMKERMANQYG 163


>gi|331085225|ref|ZP_08334311.1| hypothetical protein HMPREF0987_00614 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330408008|gb|EGG87498.1| hypothetical protein HMPREF0987_00614 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 613

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +   +++          A V A  GSGKT ++ +RV  L+      P  +L +T TKAAA
Sbjct: 1  MGFNEAQTKAICHKNGPAMVLAGPGSGKTLVITRRVEYLIKKYGVRPEQILVITFTKAAA 60

Query: 76 AEMSHR 81
           EM  R
Sbjct: 61 KEMRER 66


>gi|146312904|ref|YP_001177978.1| exonuclease V subunit beta [Enterobacter sp. 638]
 gi|145319780|gb|ABP61927.1| exodeoxyribonuclease V, beta subunit [Enterobacter sp. 638]
          Length = 1181

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTYTIAALYLRLLLGLGGNAAFSRPLGVEDLLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           +     ++  +    D  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRQTTDNPLYLRLLE-EIVDKQQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E   +L  +A              ++ +A + +      +  E
Sbjct: 139 LNAFESGMLFEQQLIEDE--SELRYQACADYWRRHCYPLPRDIAEAVHALW-----KGPE 191

Query: 206 TLISDI 211
            L+  I
Sbjct: 192 DLLRAI 197


>gi|306812276|ref|ZP_07446474.1| exonuclease V subunit beta [Escherichia coli NC101]
 gi|305854314|gb|EFM54752.1| exonuclease V subunit beta [Escherichia coli NC101]
          Length = 1180

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLTREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|331674305|ref|ZP_08375065.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA280]
 gi|331068399|gb|EGI39794.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA280]
          Length = 1183

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|262067986|ref|ZP_06027598.1| helicase IV [Fusobacterium periodonticum ATCC 33693]
 gi|291378387|gb|EFE85905.1| helicase IV [Fusobacterium periodonticum ATCC 33693]
          Length = 1017

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           ID  S  + ++        +  + A AGSGKT  +  +V  L+      P  +L LT T+
Sbjct: 152 IDGKSLDEQQRKSIVIDEDNNLIIAGAGSGKTLTISGKVKYLVERKKIKPDEILLLTFTR 211

Query: 73  AAAAEMSHRVLEIIT 87
           AAA EM+ R+ E + 
Sbjct: 212 AAANEMTERIKEKLK 226


>gi|184156689|ref|YP_001845028.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Acinetobacter
           baumannii ACICU]
 gi|294842008|ref|ZP_06786691.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
           sp. 6014059]
 gi|183208283|gb|ACC55681.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
           baumannii ACICU]
 gi|322506576|gb|ADX02030.1| recB [Acinetobacter baumannii 1656-2]
 gi|323516455|gb|ADX90836.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 1232

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       D
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPGQVIATTFTRAAAAELKSRIRARLVETHRYLD 81

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    +I  +   +SD+             + A   L  +++    L V T+ +F +
Sbjct: 82  AKRSLTEKEILLQAEQESDLLLQHILKHFATRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +    + +  A Y   E+ + 
Sbjct: 142 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQPQTVIDALYLAGELKSV 199

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 200 DSFVKLVEDSLN 211


>gi|110806757|ref|YP_690277.1| exonuclease V subunit beta [Shigella flexneri 5 str. 8401]
 gi|110616305|gb|ABF04972.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella flexneri
           5 str. 8401]
          Length = 1180

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLIVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRHHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|330826797|ref|YP_004390100.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329312169|gb|AEB86584.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 686

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S     QL A         V A AGSGKT ++  ++ RL+     P  +  +T T  A 
Sbjct: 1   MSGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITHKIARLIETGLAPRRIAAITFTNKA- 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                                          ++       +A+ +L           V T
Sbjct: 60  --------------------------AAEMRERAAGLIGRQAKDVL-----------VCT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            HA    ++++      +   F+I D++    ++++  
Sbjct: 83  FHALGVRMVREDGHVLGLKPSFSILDQDDVTGILKDCA 120


>gi|326334231|ref|ZP_08200454.1| putative ATP-dependent DNA helicase (UvrD/REP) [Nocardioidaceae
           bacterium Broad-1]
 gi|325948022|gb|EGD40139.1| putative ATP-dependent DNA helicase (UvrD/REP) [Nocardioidaceae
           bacterium Broad-1]
          Length = 700

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 24/177 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           L +    ++ +A        V A AG+GKT  +  R+   +    + P  +L +T T  A
Sbjct: 24  LAALDPEQRRVAEALRGPVRVLAGAGTGKTRAITHRIAYGVATGVYAPQEVLAVTFTTRA 83

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+   + A +  +    SA + +++   P          +  T L T    K+ 
Sbjct: 84  AGEMRQRLR-AMGAGAVQARTFHSAALRQLRFFWP---------KVYGTELPTLTESKIP 133

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
                   +++       I       D+ Q++ L  E + S ++++  D+  +  +A
Sbjct: 134 --------LIRAAAQRQRIN-----VDQAQARDLASEIEWSKVSNVHPDDYPKSAEA 177


>gi|324005623|gb|EGB74842.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 57-2]
          Length = 1180

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|297202229|ref|ZP_06919626.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148065|gb|EDY54288.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 1152

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 39/134 (29%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D      +++ +    +    V A  G+GKT  LV+ V   +     P+ +L LT ++ 
Sbjct: 9   VDPPRLDAAQRAVVEHGSGPLLVLAGPGTGKTTTLVESVASRIARGGDPARVLVLTFSRK 68

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+   I A                                             
Sbjct: 69  AAVELRDRMALRIGAARAPQA--------------------------------------- 89

Query: 134 QTIHAFCEAIMQQF 147
            T H+FC A+++  
Sbjct: 90  TTFHSFCYALVRAH 103


>gi|320662029|gb|EFX29430.1| exonuclease V subunit beta [Escherichia coli O55:H7 str. USDA 5905]
          Length = 1180

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAKWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|331684463|ref|ZP_08385055.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H299]
 gi|331078078|gb|EGI49284.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H299]
          Length = 1180

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|291284146|ref|YP_003500964.1| Exodeoxyribonuclease V, beta subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|209761124|gb|ACI78874.1| DNA helicase RecB [Escherichia coli]
 gi|290764019|gb|ADD57980.1| Exodeoxyribonuclease V, beta subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|320656509|gb|EFX24405.1| exonuclease V subunit beta [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
          Length = 1180

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAKWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|323183364|gb|EFZ68761.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1357]
          Length = 1180

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|212703872|ref|ZP_03312000.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098]
 gi|212672689|gb|EEB33172.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098]
          Length = 1234

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 12  ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            T+   S  ++E L A  +      V A  G+GKT +LV R+  LL      S LL +T 
Sbjct: 536 RTLGGFSPAQAEALTAGLETGTPVLVLAGPGAGKTRVLVGRLQYLLAQGVPASHLLAVTF 595

Query: 71  TKAAAAEMSHRVL 83
           T+ AA EM  R+ 
Sbjct: 596 TRRAAQEMRQRLQ 608


>gi|134097674|ref|YP_001103335.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291006367|ref|ZP_06564340.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910297|emb|CAM00410.1| probable ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 1078

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q  +  + L   T  +  + + P   A V A AG+GKT  +  RV+ L+      P  +L
Sbjct: 5   QRIAHALGLHPPTPEQAEVIAAPPEPALVVAGAGAGKTETMAARVVWLVANRLVTPERVL 64

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+ AA                L+D + +           ++ D S    L  T+L 
Sbjct: 65  GLTFTRKAAR--------------QLADRVRARLRRLAGSGLLDEVDPS--GELRSTVL- 107

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
             G   V T HA+   ++ +  L   +     +  E  + +L      +    +  D
Sbjct: 108 -AGEPTVLTYHAYAGRLVGEHGLRVPVEPGARLLTETAAWQLAHRVVSTWTEDLDTD 163


>gi|305431861|ref|ZP_07401028.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
 gi|304444945|gb|EFM37591.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
          Length = 686

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
            +S++  AS       + A AGSGKT  +  R+  ++     P+   L LT T  AA+ M
Sbjct: 8   NESQKEAASHIDGPMLILAGAGSGKTKTITTRLAYMIGEVGIPAINTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +R L ++ +  +                                           T H 
Sbjct: 68  KNRALSLLNSNENPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         ++F I D + SKK+++E    
Sbjct: 89  FGLLFLKLHIERLGRKNNFIIIDNDDSKKILKELIND 125


>gi|194434344|ref|ZP_03066608.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1012]
 gi|194417407|gb|EDX33512.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1012]
 gi|332088590|gb|EGI93703.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 155-74]
          Length = 1180

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|315644888|ref|ZP_07898017.1| UvrD/REP helicase [Paenibacillus vortex V453]
 gi|315279830|gb|EFU43131.1| UvrD/REP helicase [Paenibacillus vortex V453]
          Length = 819

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 45/178 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            +   +++              A AGSGKT +LV R   L+ A    P+++L +T +  A
Sbjct: 50  GLLLNRAQIQAVRHTQGPLLTLAGAGSGKTSVLVSRTGYLIAAQRVDPASILLVTFSSKA 109

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R++                    + G + N++    AR                
Sbjct: 110 AAEMKERIM-------------------ALPGLRANETAKVTAR---------------- 134

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           T H+F   +++    +  I S+          +  +   K  L  + L ++ E +   
Sbjct: 135 TFHSFFLYLLRTRGYKQEILSN---------SRHQQFIMKRILREMGLQDSYEAETLL 183


>gi|60680634|ref|YP_210778.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|60492068|emb|CAH06830.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
           9343]
          Length = 592

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 42/152 (27%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +    EQ  A     S  + A  GSGKT  ++ ++   L    ++   ++ +T+T  AA 
Sbjct: 7   NDLNPEQEKAIYNENSILLIACPGSGKTRTIIYKIAYELSKLESNKQYIIAITYTNRAAD 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+            E+L  +  +                           L + TI
Sbjct: 67  EIKERI------------ELLGVDTEQ---------------------------LWIGTI 87

Query: 137 HAFC-EAIMQQFPLEA-NITSHFAIADEEQSK 166
           H+FC E I++ + +    +   + I +   ++
Sbjct: 88  HSFCVEWILKPYHMYLEELRFGYDIINTNDTE 119


>gi|189009944|ref|ZP_02803819.2| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189404465|ref|ZP_02789656.2| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189003309|gb|EDU72295.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189365388|gb|EDU83804.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
          Length = 1183

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYERLLEEID--DKAQAAKWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|239944126|ref|ZP_04696063.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239990578|ref|ZP_04711242.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 739

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ET D +       ++ +A        V A AG+GKT  +  R+   + A  
Sbjct: 6   HSTLFPQVPETPDAVLDGLDPEQREVALALHGPVCVLAGAGTGKTRAITHRIAYGVRAGI 65

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P+T+L +T T  AA EM  R+ + + A    +    SA + ++Q   P        R 
Sbjct: 66  LQPATVLAVTFTNRAAGEMRGRLRQ-LGATGVQARTFHSAALRQLQYFWPKAVGGELPRL 124

Query: 120 LLITI 124
           L   +
Sbjct: 125 LERKV 129


>gi|238787258|ref|ZP_04631057.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia frederiksenii ATCC 33641]
 gi|238724520|gb|EEQ16161.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia frederiksenii ATCC 33641]
          Length = 1206

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+   
Sbjct: 18  LIEASAGTGKTFTIGVLYLRLLLGLGGEAAFRRPLMVEEILVVTFTEAATEELRGRIRNN 77

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I          +S +    +      +D+ +A   L+          + TIH FC+ ++ 
Sbjct: 78  IHELRIACVRGVSDDPMH-KALLAEITDLGEAAAQLLAAERQMDEAAIYTIHGFCQRMLA 136

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F     +    L  +A       
Sbjct: 137 NNAFESGI--LFEQTLVQDELPLRRQACADFWRR 168


>gi|209761118|gb|ACI78871.1| DNA helicase RecB [Escherichia coli]
 gi|320645713|gb|EFX14698.1| exonuclease V subunit beta [Escherichia coli O157:H- str. 493-89]
 gi|320651013|gb|EFX19453.1| exonuclease V subunit beta [Escherichia coli O157:H- str. H 2687]
          Length = 1180

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTGNPLYERLLEEID--DKAQAAKWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|15803339|ref|NP_289372.1| exonuclease V subunit beta [Escherichia coli O157:H7 EDL933]
 gi|15832931|ref|NP_311704.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. Sakai]
 gi|168751034|ref|ZP_02776056.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758203|ref|ZP_02783210.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168766791|ref|ZP_02791798.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777659|ref|ZP_02802666.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168788082|ref|ZP_02813089.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168801682|ref|ZP_02826689.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|195936421|ref|ZP_03081803.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. EC4024]
 gi|208808569|ref|ZP_03250906.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814260|ref|ZP_03255589.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818406|ref|ZP_03258726.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398198|ref|YP_002272283.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|254794758|ref|YP_003079595.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. TW14359]
 gi|261226118|ref|ZP_05940399.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256626|ref|ZP_05949159.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           O157:H7 str. FRIK966]
 gi|12517302|gb|AAG57931.1|AE005510_3 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Escherichia coli O157:H7 str.
           EDL933]
 gi|13363149|dbj|BAB37100.1| DNA helicase RecB [Escherichia coli O157:H7 str. Sakai]
 gi|187767152|gb|EDU30996.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014874|gb|EDU52996.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|189354956|gb|EDU73375.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363675|gb|EDU82094.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189372121|gb|EDU90537.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189376191|gb|EDU94607.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208728370|gb|EDZ77971.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735537|gb|EDZ84224.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738529|gb|EDZ86211.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159598|gb|ACI37031.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761120|gb|ACI78872.1| DNA helicase RecB [Escherichia coli]
 gi|209761122|gb|ACI78873.1| DNA helicase RecB [Escherichia coli]
 gi|209761126|gb|ACI78875.1| DNA helicase RecB [Escherichia coli]
 gi|254594158|gb|ACT73519.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|320640467|gb|EFX10006.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. G5101]
          Length = 1180

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAKWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|323167843|gb|EFZ53534.1| exodeoxyribonuclease V, beta subunit [Shigella sonnei 53G]
          Length = 1170

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYEHLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|121609570|ref|YP_997377.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121554210|gb|ABM58359.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 246

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 34/139 (24%)

Query: 39  NAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  LV+R++ L+      P +L  +T T  AA E++ R+   +T          
Sbjct: 38  GPGSGKTFTLVERIVYLITQKGVAPESLFVVTFTDKAAHELTTRISNRLTEL-------- 89

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                                     I      + + T H+ C  +++++     +   F
Sbjct: 90  -------------------------DIKFNLNEMYLGTFHSICLRLLEEYREFTRLKRSF 124

Query: 158 AIADEEQSKKLIEEAKKST 176
            + D+   +  + +  K  
Sbjct: 125 TLFDQFDQQYFLYQHIKDF 143


>gi|121596152|ref|YP_988048.1| UvrD/REP helicase [Acidovorax sp. JS42]
 gi|120608232|gb|ABM43972.1| UvrD/REP helicase [Acidovorax sp. JS42]
          Length = 689

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S     QL A         V A AGSGKT ++  ++ RL+     P  +  +T T  A 
Sbjct: 1   MSGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITHKIARLIETGLAPRRIAAITFTNKA- 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                                          ++       +A+ +L           V T
Sbjct: 60  --------------------------AAEMRERAAGLIGRQAKDVL-----------VCT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            HA    ++++      +   F+I D++    ++++  
Sbjct: 83  FHALGVRMVREDGHVLGLKPSFSILDQDDVTGILKDCA 120


>gi|221069358|ref|ZP_03545463.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
 gi|220714381|gb|EED69749.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
          Length = 690

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 40/157 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            ++  + + +  +D      V A AGSGKT ++  ++ RL+     P  +  +T T  A 
Sbjct: 4   GLNLAQLQAVHYTD--GPCLVLAGAGSGKTRVITHKIGRLIETGLAPRRIAAITFTNKA- 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                                          ++       +A+ +L           + T
Sbjct: 61  --------------------------AAEMRERAAGLIGRQAKEVL-----------ICT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            H+    ++++      +   F+I D +    ++++ 
Sbjct: 84  FHSLGVRMVREDGHILGLKPQFSILDTDDVTGILKDC 120


>gi|238897279|ref|YP_002922956.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465034|gb|ACQ66808.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 1208

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 35  WVSANAGSGKTHILV-------------QRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + A+AG+GKT  +                 +R L        +L +T T++A  E+  R
Sbjct: 23  LIEASAGTGKTFTIGILYLRLLLGLGGHHAYIRRLT----VEEILVVTFTQSATEELRGR 78

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   I             +    Q      +D++ A  +L+          + TIH FC+
Sbjct: 79  IRSEIYNLRMACLNE-GTQNAFYQKLLAEITDLNAAASILLFAERNMDQAAIYTIHGFCQ 137

Query: 142 AIMQQFPLEANI 153
             +     E+ +
Sbjct: 138 KTLLNNAFESGV 149


>gi|303247976|ref|ZP_07334243.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302490700|gb|EFL50603.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 1070

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +++       R   V A  G+GKTH L+ ++  LL   A P  +L +T T+ AA E+ 
Sbjct: 476 NPAQRAAVDSQARHLLVVAGPGTGKTHTLLAKIRALLDTGAPPGDILAVTFTRRAAGELR 535

Query: 80  HRVLEIIT----------------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            R+                      W+     +  A  T   G++P       +R L  T
Sbjct: 536 ERLARDAGMAEDAATEASQDAPALPWADTLHALALAAWTASGGQEPVLLSEDASRRLFAT 595

Query: 124 ILETPGGLK 132
           +     G +
Sbjct: 596 VNPELSGAR 604


>gi|74313388|ref|YP_311807.1| exonuclease V subunit beta [Shigella sonnei Ss046]
 gi|73856865|gb|AAZ89572.1| DNA helicase ATP-dependent dsDNA/ssDNA exonuclease V subunit
           [Shigella sonnei Ss046]
          Length = 1180

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYEHLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|260556280|ref|ZP_05828499.1| exodeoxyribonuclease V, beta subunit [Acinetobacter baumannii ATCC
           19606]
 gi|260410335|gb|EEX03634.1| exodeoxyribonuclease V, beta subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 1232

 Score = 84.9 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       D
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPGQVIATTFTRAAAAELKSRIRARLVETYRYLD 81

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    +I  +   +SD+             + A   L  +++    L V T+ +F +
Sbjct: 82  AKRSLTEKEILLQAEQESDLLLQHVLKHFATRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +    + +  A Y   E+ + 
Sbjct: 142 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQPQTVIDALYLAGELKSV 199

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 200 DSFVKLVEDSLN 211


>gi|149181197|ref|ZP_01859696.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           SG-1]
 gi|148851096|gb|EDL65247.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           SG-1]
          Length = 743

 Score = 84.9 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 46/156 (29%)

Query: 2   IYHNSFQEHSETID----------LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQR 51
           +YHN   +H E+ D           I   +++              A AGSGKT +LV R
Sbjct: 21  VYHNENHQHYESEDRFYFQRLEEKGICLNEAQMKAVRHMEGPCLTLAGAGSGKTSVLVSR 80

Query: 52  VLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN 110
              LL + +  P  +L LT +K AA EM  RV  +                         
Sbjct: 81  TGYLLQVKHVPPENILLLTFSKKAAMEMKQRVASL------------------------- 115

Query: 111 KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
             D+++              ++  T H+F   +++ 
Sbjct: 116 -PDINR---------NAVNRIQAGTFHSFFLFLLRS 141


>gi|222112307|ref|YP_002554571.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221731751|gb|ACM34571.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 689

 Score = 84.9 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S     QL A         V A AGSGKT ++  ++ RL+     P  +  +T T  A 
Sbjct: 1   MSGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITHKIARLIETGLAPRRIAAITFTNKA- 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                                          ++       +A+ +L           V T
Sbjct: 60  --------------------------AAEMRERAAGLIGRQAKDVL-----------VCT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            HA    ++++      +   F+I D++    ++++  
Sbjct: 83  FHALGVRMVREDGHVLGLKPSFSILDQDDVTGILKDCA 120


>gi|307625588|gb|ADN69892.1| exonuclease V subunit beta [Escherichia coli UM146]
          Length = 1180

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +    +    LL           V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYKRLLEEIDYKAQAAQWLLLAE--RQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|312194714|ref|YP_004014775.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311226050|gb|ADP78905.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1202

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 32/165 (19%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            +  +D +     ++  A+       + A  G+GKT  LV  +   +          L +
Sbjct: 524 SASVLDGLD--ADQRAAAAVTAGPLVILAGPGTGKTRTLVHAIAHRVRERGVPAGECLAV 581

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T+ AA E+  R+           D++L+A        +P++   +             
Sbjct: 582 TFTRRAADELVERL-----------DQLLAAPRAGGGDGRPDQRVTA------------- 617

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                 T H     ++++  +      H  +AD+    +L+ EA 
Sbjct: 618 -----TTFHGLGLLVIREQHIRLARGPHVQVADDAVRAELLAEAL 657


>gi|291523576|emb|CBK81869.1| Superfamily I DNA and RNA helicases [Coprococcus catus GD/7]
          Length = 666

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
          +   KS+            V A  GSGKT ++  RV  L+  A  HP+ +L +T TKAAA
Sbjct: 1  MELNKSQLQAVCHDKGPMMVLAGPGSGKTMVITHRVKWLIEHAGVHPAGILVVTFTKAAA 60

Query: 76 AEMSHR 81
           EM  R
Sbjct: 61 DEMRQR 66


>gi|326443259|ref|ZP_08217993.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 707

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
            +D +     ++ +A+       V A AG+GKT  +  R+   + A    P+++L +T T
Sbjct: 1   MLDGLD--PEQRAVATTLHGPVCVLAGAGTGKTRAITHRIAYGVRAGILQPASVLAVTFT 58

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
             AA EM  R+ + + A    +    SA + ++Q   P        R L   I
Sbjct: 59  NRAAGEMRGRLRQ-LGAGGVQARTFHSAALRQLQYFWPRAVGGEVPRLLERKI 110


>gi|320667103|gb|EFX34066.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. LSU-61]
          Length = 1180

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAKWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|288560394|ref|YP_003423880.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
 gi|288543104|gb|ADC46988.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
          Length = 1546

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 38/124 (30%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80
            E+ +     +   + A  GSGKT ++ +RV  L+      P + L +T +  AA E+  
Sbjct: 18  QEEAVTYYGEKPLLIEAGPGSGKTRVITERVRYLVEEKEMDPESFLIITFSNKAARELKE 77

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+++                                        ++    +++ T+H+FC
Sbjct: 78  RLMDYFD-------------------------------------VDIINQMQISTVHSFC 100

Query: 141 EAIM 144
             ++
Sbjct: 101 YKLL 104


>gi|264676536|ref|YP_003276442.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
 gi|299531318|ref|ZP_07044728.1| UvrD/REP helicase [Comamonas testosteroni S44]
 gi|262207048|gb|ACY31146.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
 gi|298720725|gb|EFI61672.1| UvrD/REP helicase [Comamonas testosteroni S44]
          Length = 690

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 39/159 (24%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +     QL A         V A AGSGKT ++  ++ RL+     P  +  +T T  A
Sbjct: 1   MSAGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITHKIGRLIETGLAPRRIAAITFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
                                           ++       +A+ +L           + 
Sbjct: 61  ---------------------------AAEMRERAAGLIGRQAKEVL-----------IC 82

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           T H+    ++++      +   F+I D +    ++++  
Sbjct: 83  TFHSLGVRMVREDGHILGLKPQFSILDTDDVTGILKDCA 121


>gi|260550543|ref|ZP_05824753.1| ATP-dependent exoDNAse beta subunit [Acinetobacter sp. RUH2624]
 gi|260406458|gb|EEW99940.1| ATP-dependent exoDNAse beta subunit [Acinetobacter sp. RUH2624]
          Length = 1232

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       D
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPGQVIATTFTRAAAAELKSRIRARLVETYRYLD 81

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    +I  +   +SD+             + A   L  +++    L V T+ +F +
Sbjct: 82  AKRSLTEKEILLQAEQESDLLLQHVLKHFATRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +    + +  A Y   E+ + 
Sbjct: 142 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQPQTVIDALYLAGELKSV 199

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 200 DSFVKLVEDSLN 211


>gi|302553994|ref|ZP_07306336.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302471612|gb|EFL34705.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 512

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 39/134 (29%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D      S++ +    T    V A  G+GKT  LV+ V   +     P  +L LT ++ 
Sbjct: 47  VDPPLLDASQRSVVDHTTGPLLVLAGPGTGKTTTLVESVTERIARGGDPERVLVLTFSRR 106

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+ +   A                                             
Sbjct: 107 AAVELRDRMAQRTGAARAPQA--------------------------------------- 127

Query: 134 QTIHAFCEAIMQQF 147
            T H+FC A+++  
Sbjct: 128 TTFHSFCYALVRAH 141


>gi|57505386|ref|ZP_00371314.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter upsaliensis RM3195]
 gi|57016211|gb|EAL52997.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter upsaliensis RM3195]
          Length = 673

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 23/145 (15%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQL A+        + A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3   LSKLNEEQLKAAKTNFGHNLIIASAGTGKTSTIVARIAFLLQQGISPERIMLLTFTNKAS 62

Query: 76  AEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            EM  R+      +I +     +    +  I K   K        + + LL ++ E    
Sbjct: 63  KEMITRLSRYFDSKITSKILAGTFHSTAYTILKNTNKNIALKQAGELKTLLKSVYEK--- 119

Query: 131 LKVQTIHAFCEAIMQQFPLEANITS 155
                         ++F   ++I  
Sbjct: 120 --------------RRFSHLSDIKP 130


>gi|331672492|ref|ZP_08373282.1| helicase IV (75 kDa helicase) [Escherichia coli TA280]
 gi|331070398|gb|EGI41763.1| helicase IV (75 kDa helicase) [Escherichia coli TA280]
          Length = 715

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|323180256|gb|EFZ65808.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1180]
          Length = 1170

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|260869499|ref|YP_003235901.1| exonuclease V, beta subunit RecB [Escherichia coli O111:H- str.
           11128]
 gi|257765855|dbj|BAI37350.1| exonuclease V, beta subunit RecB [Escherichia coli O111:H- str.
           11128]
          Length = 1180

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|226313609|ref|YP_002773503.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226096557|dbj|BAH44999.1| putative ATP-dependent DNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 805

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q           + A AGSGKT ++  R   L+      P+ ++ +T T  AA E+  R
Sbjct: 183 QQQAVHATEGPFLILAGAGSGKTRVMTARTTHLISDLGVKPNQIMVVTFTTKAADEIRQR 242

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           +   + A         +      +    ++ +    + LL  
Sbjct: 243 IARQLPAGQARELIAGTFHSIFYRMLLHHQPERWDQQRLLKK 284


>gi|189424132|ref|YP_001951309.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189420391|gb|ACD94789.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 1048

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 40/158 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            ++++           V A  G+GKT IL  R+  +LL+ +A P ++LCLT+T A    M
Sbjct: 16  NQAQRKAVDTLEGPVLVIAGPGTGKTEILAARIANILLSTDATPESILCLTYTDAGTVAM 75

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +R+L+ I                                            + + T HA
Sbjct: 76  RNRLLQFIGP--------------------------------------NAYRVDIFTFHA 97

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           FC  ++Q+      + S   I  E +  + + E   + 
Sbjct: 98  FCNLVIQENADYFGLRSLTTI-SELEQFRFVREIIDAF 134


>gi|126433515|ref|YP_001069206.1| exodeoxyribonuclease V, beta subunit [Mycobacterium sp. JLS]
 gi|126233315|gb|ABN96715.1| exodeoxyribonuclease V, beta subunit [Mycobacterium sp. JLS]
          Length = 1115

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 71/183 (38%), Gaps = 9/183 (4%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL----E 84
           P  +  + A+AG+GKT  L   V R +   A     +L +T  +AA+ E+  RV     +
Sbjct: 24  PLTTTVLEASAGTGKTFALAGLVTRYIAEGAATLDQMLLVTFGRAASQELRERVRCQMLD 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            + A+   S    +  +  +     ++  + K R  L   L       + T H FC+ ++
Sbjct: 84  ALVAFEDPSTVGDNQLVAHLIDAPDDERHLRKQR--LKDALAGFDAATIATTHQFCQLVL 141

Query: 145 QQFPLEANITSHFAIADEEQ--SKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           +   +  +  +   + +     + +++++   +       D      +A     E+  + 
Sbjct: 142 KSLGVAGDTDTGVQLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTRGQALELAHEVVGNA 201

Query: 203 DIE 205
             E
Sbjct: 202 GTE 204


>gi|183221448|ref|YP_001839444.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167779870|gb|ABZ98168.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 678

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 38/161 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           L+    ++    S       V A AGSGKT ++  R+  ++     P S ++ L+ T  +
Sbjct: 7   LMKLNAAQMEAVSTIQGPLLVFAGAGSGKTRVITNRIAHMVEGVKIPASKIVALSFTNKS 66

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM+ R+ +++                                       E   G+ + 
Sbjct: 67  AKEMAERLRKMVPR-------------------------------------EKLKGITLS 89

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           T H+    I+++   +      F + +    +  + +  KS
Sbjct: 90  TFHSLGLKILKEHIGKLGYNETFLLFNGTDQEAFVSDLLKS 130


>gi|300820608|ref|ZP_07100759.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 119-7]
 gi|300526872|gb|EFK47941.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 119-7]
          Length = 1180

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|296118828|ref|ZP_06837404.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306]
 gi|295968317|gb|EFG81566.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306]
          Length = 1087

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 22/157 (14%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           + T  +  +         V+A AG+GKT  +  RV+ L+      P  +L LT T+ AA 
Sbjct: 20  APTAEQATVIEGGLGPKLVTAGAGAGKTETMASRVVSLVANGYVRPEQVLGLTFTRKAAQ 79

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++  R+   +            +++                       LE+    KV T 
Sbjct: 80  QLEQRIRNSLIQLRDTGLFAPGSDV--------------------AQALESIAP-KVMTY 118

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
            A+   ++ ++ L   +     +  + +   +  E  
Sbjct: 119 DAYAGELVSEYGLYLPVEPSARLITDAERFAIAHEIV 155


>gi|118465710|ref|YP_883674.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium 104]
 gi|118166997|gb|ABK67894.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium 104]
          Length = 1100

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 5/170 (2%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITAWSHL 92
            + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A +  
Sbjct: 18  VLEASAGTGKTFALAGLVTRYLADGAATLDQMLLITFGRAASQELRERVRCQIVDAVAAF 77

Query: 93  SDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           +D   + +   +        D ++  R  L   L       + T H FC+ +++   +  
Sbjct: 78  ADPSRAGDNELVAYLLDGTEDRLAARRQRLRDGLAGFDAATIATTHQFCQLVLRSLGVAG 137

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +  +   + D     +L+ E       +    ++++    + E L ++ D
Sbjct: 138 DTAAGVTLLDSLD--ELVAEIVDDLYLAHFGQDHDDPVLHYREALRLARD 185


>gi|71065902|ref|YP_264629.1| rep helicase, single-stranded DNA-dependent ATPase protein
           [Psychrobacter arcticus 273-4]
 gi|71038887|gb|AAZ19195.1| probable rep helicase, single-stranded DNA-dependent ATPase protein
           [Psychrobacter arcticus 273-4]
          Length = 154

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           + L A+       V A AGSGKT  L  R   L+     P  +L LT T+ AA E+  R 
Sbjct: 69  QLLAATTIEGKVLVIAGAGSGKTKTLTYRTSYLIENGVSPKEILLLTFTRKAANEIKSRA 128

Query: 83  LEIITAWSHLSDEILSAEITK 103
            +++ +    +  +      +
Sbjct: 129 KKLLASIPSFTQRLDEDLEER 149


>gi|110641152|ref|YP_668882.1| DNA helicase IV [Escherichia coli 536]
 gi|300982944|ref|ZP_07176378.1| UvrD/REP helicase [Escherichia coli MS 200-1]
 gi|110342744|gb|ABG68981.1| helicase IV [Escherichia coli 536]
 gi|300307033|gb|EFJ61553.1| UvrD/REP helicase [Escherichia coli MS 200-1]
 gi|324012915|gb|EGB82134.1| UvrD/REP helicase [Escherichia coli MS 60-1]
          Length = 715

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|323957440|gb|EGB53162.1| exodeoxyribonuclease V [Escherichia coli H263]
          Length = 862

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYKRLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|297242782|ref|ZP_06926720.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
 gi|296888993|gb|EFH27727.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
          Length = 519

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
            +D +  ++ E   A +      + A AG+GKT  + +R+          P  +L +T +
Sbjct: 27  LLDGLDDSQREAATALE--GPVRIIACAGAGKTRTITRRIAYACATGKWDPERVLAVTFS 84

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITIL 125
             AAAEM  R+  +  +         SA + +I+    +       S M+ ++ ++ + L
Sbjct: 85  VKAAAEMRSRIEALGVSNVGCVSTFHSAALQQIRSVWNDVCSAQFPSIMNDSQQIIASAL 144

Query: 126 ETPGGLKVQTI 136
           +        T+
Sbjct: 145 KRYPDFADMTL 155


>gi|293449143|ref|ZP_06663564.1| exodeoxyribonuclease V [Escherichia coli B088]
 gi|331678798|ref|ZP_08379472.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H591]
 gi|291322233|gb|EFE61662.1| exodeoxyribonuclease V [Escherichia coli B088]
 gi|331073628|gb|EGI44949.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H591]
          Length = 1183

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|218555369|ref|YP_002388282.1| exonuclease V subunit beta [Escherichia coli IAI1]
 gi|218362137|emb|CAQ99746.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           IAI1]
          Length = 1180

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|89098260|ref|ZP_01171145.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           NRRL B-14911]
 gi|89087117|gb|EAR66233.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           NRRL B-14911]
          Length = 686

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 51/230 (22%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
           FQ  S+    +++ + E + A D      + + AGSGKT +L  R+  ++      PS +
Sbjct: 34  FQLLSDYGIHLNEPQKEAVKAVD--GPVAIISGAGSGKTTVLTCRIGYMIHSREISPSNI 91

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +T+TK A+ EM  R+  I       S  ++S                           
Sbjct: 92  LLVTYTKKASVEMIERLARIPGLNRSASRSVVS--------------------------- 124

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLA------ 178
                    T H+ C  I++          +F +     +   +I+   K  +       
Sbjct: 125 --------GTYHSVCLRILRAEGY------NFRVLGSTKKQHYIIKSILKKMVLQDSYSP 170

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
            ++L+     K       +I ++  +++ + +I +   A+K     + Y 
Sbjct: 171 EVILNIISSWKNEMVRPQDIFDETQVQSELKEIYTQYEAIKENENLYDYD 220


>gi|300815762|ref|ZP_07095986.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 107-1]
 gi|300906653|ref|ZP_07124342.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 84-1]
 gi|301302956|ref|ZP_07209083.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 124-1]
 gi|307310570|ref|ZP_07590218.1| exodeoxyribonuclease V, beta subunit [Escherichia coli W]
 gi|331669552|ref|ZP_08370398.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA271]
 gi|300401554|gb|EFJ85092.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 84-1]
 gi|300531691|gb|EFK52753.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 107-1]
 gi|300841620|gb|EFK69380.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 124-1]
 gi|306909465|gb|EFN39960.1| exodeoxyribonuclease V, beta subunit [Escherichia coli W]
 gi|315062126|gb|ADT76453.1| exonuclease V subunit beta [Escherichia coli W]
 gi|315256680|gb|EFU36648.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 85-1]
 gi|323377294|gb|ADX49562.1| exodeoxyribonuclease V, beta subunit [Escherichia coli KO11]
 gi|331063220|gb|EGI35133.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA271]
          Length = 1180

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|254776976|ref|ZP_05218492.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 1100

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 5/170 (2%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITAWSHL 92
            + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A +  
Sbjct: 18  VLEASAGTGKTFALAGLVTRYLADGAATLDQMLLITFGRAASQELRERVRCQIVDAVAAF 77

Query: 93  SDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           +D   + +   +        D ++  R  L   L       + T H FC+ +++   +  
Sbjct: 78  ADPSRAGDNELVAYLLDGTEDRLAARRQRLRDGLAGFDAATIATTHQFCQLVLRSLGVAG 137

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +  +   + D     +L+ E       +    ++++    + E L ++ D
Sbjct: 138 DTAAGVTLLDSLD--ELVAEIVDDLYLAHFGQDHDDPVLHYREALRLARD 185


>gi|309812345|ref|ZP_07706100.1| exodeoxyribonuclease V, beta subunit [Dermacoccus sp. Ellin185]
 gi|308433650|gb|EFP57527.1| exodeoxyribonuclease V, beta subunit [Dermacoccus sp. Ellin185]
          Length = 1127

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 12/216 (5%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL 83
           + A  P  +  + A+AG+GKT  L   V RL+         LL +T ++AA+ E+  RV 
Sbjct: 26  VTAPIPHGTTLIEASAGTGKTWTLSALVTRLVAEEGLPLEELLVVTFSRAASQELRERVR 85

Query: 84  EIITAWSHLSDEILSAEITKIQG--KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           E +        +    +   +    +  +   +++    L   L +     + TIH FC 
Sbjct: 86  EQLERVLTRLRQAPHDDDGVLVAALRSDDPGVLAERCDRLARALASFDSALIATIHQFCH 145

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL-----ASIMLDNNEELKKAFYEIL 196
            +++   +  +  S   +   E +  L +E                D + E  +     +
Sbjct: 146 DVLKGLGVAGDSDSFATLV--EDTTGLRDEVIDDLYVARRAQDPSFDLSHERARFIGHCV 203

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232
             +    ++    D  S R  +       +   RRK
Sbjct: 204 LTNTGAALDAPADD--SQRAVIDFAEALRNEYARRK 237


>gi|169797388|ref|YP_001715181.1| exonuclease V, beta chain [Acinetobacter baumannii AYE]
 gi|213155797|ref|YP_002317842.1| exonuclease V beta chain [Acinetobacter baumannii AB0057]
 gi|215484828|ref|YP_002327063.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
           polypeptide) [Acinetobacter baumannii AB307-0294]
 gi|294837425|ref|ZP_06782108.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
           polypeptide) [Acinetobacter sp. 6013113]
 gi|294858014|ref|ZP_06795783.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
           polypeptide) [Acinetobacter sp. 6013150]
 gi|301345350|ref|ZP_07226091.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
           polypeptide) [Acinetobacter baumannii AB056]
 gi|301512605|ref|ZP_07237842.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
           polypeptide) [Acinetobacter baumannii AB058]
 gi|301594570|ref|ZP_07239578.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
           polypeptide) [Acinetobacter baumannii AB059]
 gi|169150315|emb|CAM88212.1| exonuclease V, beta chain [Acinetobacter baumannii AYE]
 gi|213054957|gb|ACJ39859.1| exonuclease V beta chain [Acinetobacter baumannii AB0057]
 gi|213986544|gb|ACJ56843.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
           polypeptide) [Acinetobacter baumannii AB307-0294]
          Length = 1232

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       D
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPGQVIATTFTRAAAAELKSRIRARLIETHRYLD 81

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    +I  +   ++D+             + A   L  +++    L V T+ +F +
Sbjct: 82  AKRSLTEKEILLQAEQETDLLLQHILKHFATRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +    + +  A Y   E+ + 
Sbjct: 142 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQPQTVIDALYLAGELKSV 199

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 200 DSFVKLVEDSLN 211


>gi|85059951|ref|YP_455653.1| exonuclease V subunit beta [Sodalis glossinidius str. 'morsitans']
 gi|84780471|dbj|BAE75248.1| exodeoxyribonuclease V beta subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 1180

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 17/187 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            V A+AG+GKT+ L    LRLLL                +L +T T+AA  E+  R+ + 
Sbjct: 19  LVEASAGTGKTYTLAALYLRLLLGLGGEAAFPRPLSVEEILVVTFTEAATEELRGRIRDN 78

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I     L+     +E   +        D   A   L+          + TIH FC+ ++ 
Sbjct: 79  IHRL-RLACMRGESEDPLLAALLAQLDDHRLAALHLLAAERQMDEAAIFTIHGFCQRMLN 137

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
              +E+ +     + ++E    L ++               E+ +   +  E       E
Sbjct: 138 HSAIESGMLFQQTLLEDE--TLLRQQVSADFWRRHCYPLPLEVARMVQQHWE-----GPE 190

Query: 206 TLISDII 212
            L+++++
Sbjct: 191 NLLAELL 197


>gi|239500909|ref|ZP_04660219.1| exonuclease V, beta chain [Acinetobacter baumannii AB900]
          Length = 1232

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       D
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPGQVIATTFTRAAAAELKSRIRVRLVETHRYLD 81

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    +I  +   +SD+             + A   L  +++    L V T+ +F +
Sbjct: 82  AKRSLTEKEILLQAEQESDLLLQHILKHFATRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +    + +  A Y   E+ + 
Sbjct: 142 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQPQTVIDALYLAGELKSV 199

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 200 DSFVKLVEDSLN 211


>gi|318078528|ref|ZP_07985860.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actF]
          Length = 569

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L      ++ +A   T    V A AG+GKT  L  R+   +      P T+L +T T+ A
Sbjct: 2   LHGLDPEQREVALALTGPVCVLAGAGTGKTRALTHRIAYGVRTGRYKPGTVLAVTFTQRA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
           A EM  R+ E + A    +    SA + ++Q   P
Sbjct: 62  AGEMRGRLRE-LGAHGVQARTFHSAALRQLQFFWP 95


>gi|254876659|ref|ZP_05249369.1| ATP-dependent exoDNAse beta subunit [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842680|gb|EET21094.1| ATP-dependent exoDNAse beta subunit [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 1194

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 74/197 (37%), Gaps = 22/197 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
           +++ T  +    +   R   + A+AG+GKT  +    +R LL     P  +L +T TK A
Sbjct: 1   MVNMTNLDANTITLQGRHI-IEASAGTGKTFNITTLYIRLLLEKKLLPKDILVMTFTKDA 59

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E+  RV   I       D +   +  K      +   + +A       L       + 
Sbjct: 60  TQEIIGRVEAKIR------DVLADHKSCKEVLSDEDYKHIKRA-------LLEVDEAAIF 106

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH FC+ ++ +    + +     ++ E  +  ++++  +      +  N        +E
Sbjct: 107 TIHGFCKKVLSEQAFASGM--EMDVSMEVDTSDILQKVVEDFFRKHINKNKTN-----FE 159

Query: 195 ILEISNDEDIETLISDI 211
            L+       E  + ++
Sbjct: 160 YLQAYKLHTPEKFLDNL 176


>gi|193071405|ref|ZP_03052320.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E110019]
 gi|260856932|ref|YP_003230823.1| exonuclease V, beta subunit RecB [Escherichia coli O26:H11 str.
           11368]
 gi|192955267|gb|EDV85755.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E110019]
 gi|257755581|dbj|BAI27083.1| exonuclease V, beta subunit RecB [Escherichia coli O26:H11 str.
           11368]
          Length = 1180

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|239982169|ref|ZP_04704693.1| putative ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 708

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L      ++ +A+       V A AG+GKT  L  R+   +  N   P+++L +T T  A
Sbjct: 2   LAGLDPEQRAVATALHGPVCVLAGAGTGKTRALTHRIAYGVRTNRFQPTSVLAVTFTNRA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           A EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 62  AGEMRGRLRQ-LGAGGVQARTFHSAALRQLQYFWPKA 97


>gi|222824055|ref|YP_002575629.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
 gi|222539277|gb|ACM64378.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
          Length = 687

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 54/164 (32%), Gaps = 38/164 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S++        +  + A AGSGKT  +  R+  L+          L LT T  AA  M
Sbjct: 8   NDSQKEAIMHIDGAMLILAGAGSGKTKTITARLAYLIDHIGVPAQNTLTLTFTNKAANVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R      A + L D+ L   +                                 T H 
Sbjct: 68  KTR------ALALLQDQNLHNPLL-------------------------------CTFHK 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           F    ++ +    N  ++F I D +  KK++++     L S + 
Sbjct: 91  FGLLFLRLYSERINRANNFVIIDTDDKKKILKDLASENLQSSLA 134


>gi|210616711|ref|ZP_03291193.1| hypothetical protein CLONEX_03414 [Clostridium nexile DSM 1787]
 gi|210149686|gb|EEA80695.1| hypothetical protein CLONEX_03414 [Clostridium nexile DSM 1787]
          Length = 723

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 43/137 (31%), Gaps = 43/137 (31%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L   T ++++      ++  V A  G+GKT  LV RV  +L     P  +  LT T+ AA
Sbjct: 275 LKEPTVNQKMAIERFDQAMLVCAGPGAGKTATLVARVDYMLTNGISPGRIFVLTFTRKAA 334

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+   +                                              + T
Sbjct: 335 QEVEERISHDMKP-------------------------------------------NIST 351

Query: 136 IHAFCEAIMQQFPLEAN 152
           IHA    I++Q      
Sbjct: 352 IHALAFQIIRQHEYILG 368


>gi|326334225|ref|ZP_08200448.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
 gi|325948016|gb|EGD40133.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
          Length = 854

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 39/154 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++ +   P     V A  G+GKT  LV+ V+  +      P  LL LT ++ AA ++  R
Sbjct: 23  QRSVVEHPGGPLLVLAGPGTGKTTTLVEAVVDRIENRGVRPDQLLALTFSRKAAEQLRDR 82

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V   +                                        T  G    T H+F  
Sbjct: 83  VTARLGR--------------------------------------TLSGAVSSTFHSFAY 104

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            +++++       +   +    ++  +++E    
Sbjct: 105 GLVRRYAPAELYAAPLTLLSAPEADVVLQELLAD 138


>gi|309785130|ref|ZP_07679761.1| exodeoxyribonuclease V, beta chain [Shigella dysenteriae 1617]
 gi|308926250|gb|EFP71726.1| exodeoxyribonuclease V, beta chain [Shigella dysenteriae 1617]
          Length = 316

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLDGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|209973035|ref|YP_002300482.1| putative UvrD-type helicase [Bacillus phage SPO1]
          Length = 703

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 37/74 (50%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           LI    S+            ++A AGSGKT +L  R+  +L        +LC T+TK A 
Sbjct: 29  LIGLNNSQLRAVLTLEGPVQINAVAGSGKTRVLTSRIAYMLSTGIKARHILCTTYTKKAT 88

Query: 76  AEMSHRVLEIITAW 89
            EM+ R+ ++I++ 
Sbjct: 89  QEMTERLSKLISSL 102


>gi|68066901|ref|XP_675422.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56494600|emb|CAH94076.1| hypothetical protein PB000399.00.0 [Plasmodium berghei]
          Length = 198

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 15/168 (8%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
             + ++ +  +   P   +  + A  GSGKT  L  R+++ ++      +++C+T T  +
Sbjct: 34  FRNLSEEQTKIVQVPLEYNLCIIACPGSGKTSTLTARIIKSIIERKK--SIVCITFTNYS 91

Query: 75  AAEMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           A ++  ++++ I     L         L      I G K         + +     +   
Sbjct: 92  AKDLKEKIIKKINCLIDLCTGKEIQNKLFNRNKNIGGNKIRNKKYDINKTMYKNKFKVLD 151

Query: 130 -GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
             + + TIH+FC  I+            F I  E  +  +I+ A  + 
Sbjct: 152 TTIFIGTIHSFCRYIL------LKYKGEFKILTELINSNVIKMAFNNF 193


>gi|191168612|ref|ZP_03030395.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B7A]
 gi|309793867|ref|ZP_07688292.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 145-7]
 gi|190901358|gb|EDV61124.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B7A]
 gi|308122274|gb|EFO59536.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 145-7]
          Length = 1180

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|331651986|ref|ZP_08353005.1| helicase IV (75 kDa helicase) [Escherichia coli M718]
 gi|331050264|gb|EGI22322.1| helicase IV (75 kDa helicase) [Escherichia coli M718]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|331646223|ref|ZP_08347326.1| helicase IV (75 kDa helicase) [Escherichia coli M605]
 gi|331044975|gb|EGI17102.1| helicase IV (75 kDa helicase) [Escherichia coli M605]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|152965147|ref|YP_001360931.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151359664|gb|ABS02667.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 701

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           L      ++ +A+       V A AG+GKT  +  R+   + + A+ P+ +L +T T  A
Sbjct: 15  LAGLDPEQRQVATTLEGPVCVLAGAGTGKTRAITHRIAYAVHSGAYVPNRVLAVTFTARA 74

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGL 131
           A EM  R+ + +      +    +A + ++Q   P     +  +   H    I +    L
Sbjct: 75  AGEMRTRLRD-LGVAGVQARTFHAAALRQLQFFWPQSIGGTLPNLVEHKAPLIADACNRL 133

Query: 132 KV 133
           ++
Sbjct: 134 RI 135


>gi|126725750|ref|ZP_01741592.1| helicase IV [Rhodobacterales bacterium HTCC2150]
 gi|126704954|gb|EBA04045.1| helicase IV [Rhodobacterales bacterium HTCC2150]
          Length = 984

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTL 65
           F++  +TI+    T  ++L       +  V A AGSGKT ++V +   L+ +    P  +
Sbjct: 194 FKDFFDTIESNPLTPEQRLAVIADEDATIVLAGAGSGKTSVIVAKAAYLIKSGIRQPDKI 253

Query: 66  LCLTHTKAAAAEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           L +   K AAAEM+ R+ E   A      +  L + I+           P+ SD  +   
Sbjct: 254 LLMAFGKDAAAEMATRIEERAGAKVDALTFHALGNSIIRQAENGAPALAPHASDDKQFTA 313

Query: 120 LLITILETPGGLK 132
           LL  IL      +
Sbjct: 314 LLRDILFNDIAAQ 326


>gi|301023091|ref|ZP_07186898.1| UvrD/REP helicase [Escherichia coli MS 69-1]
 gi|300397212|gb|EFJ80750.1| UvrD/REP helicase [Escherichia coli MS 69-1]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|290559702|gb|EFD93027.1| DNA helicase II [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 108

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 32/113 (28%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D   +  + AN G+GKT  L  RV+ L+    + + ++CLT T  A  EM  ++      
Sbjct: 2   DLAINILIKANPGTGKTTALADRVVELVKNGVNENEIVCLTFTNKAVDEMFDKITNKFK- 60

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
                                 ++++  AR           GL + T H+FC 
Sbjct: 61  ----------------------ENEIEPAR---------INGLTIATFHSFCN 82


>gi|315638948|ref|ZP_07894119.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter upsaliensis JV21]
 gi|315480977|gb|EFU71610.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter upsaliensis JV21]
          Length = 675

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 15/141 (10%)

Query: 17  ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S+   EQL A+        + A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3   LSKLNEEQLKAAKANFGHNLIIASAGTGKTSTIVARIAFLLQQGISPERIMLLTFTNKAS 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS-KARHLLITILETPGGLKVQ 134
            EM  R+     +         +   T     K    D++ K    L T+L++       
Sbjct: 63  KEMIARLSRYFDSKITSKILAGTFHSTAYTILKNANKDIALKQAGELKTLLKSVYEK--- 119

Query: 135 TIHAFCEAIMQQFPLEANITS 155
                     ++F   ++I  
Sbjct: 120 ----------RRFSHLSDIKP 130


>gi|320008686|gb|ADW03536.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 740

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  ++ D +       ++ +A        V A AG+GKT  +  R+   + A  
Sbjct: 6   HSTLFPQVPDSADAVLDGLDPEQREVALALGGPVCVLAGAGTGKTRAITHRIAYGVRAGI 65

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             P+T+L +T T  AA EM  R+ + + A    +    SA + ++Q   P  
Sbjct: 66  LQPTTVLAVTFTNRAAGEMRGRLRQ-LGATGVQARTFHSAALRQLQYFWPKA 116


>gi|110642987|ref|YP_670717.1| exonuclease V subunit beta [Escherichia coli 536]
 gi|110344579|gb|ABG70816.1| exodeoxyribonuclease V beta chain [Escherichia coli 536]
          Length = 1180

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     +     ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYARLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLTREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|261206947|ref|ZP_05921636.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566766|ref|ZP_06447179.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260078575|gb|EEW66277.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161443|gb|EFD09330.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 328

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 43/160 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAA 75
           ++    EQ    +   + +V+A  GSGKT +L +++    +  +     ++ +T+T  AA
Sbjct: 9   VNDLNLEQKDVVESEDNLYVNACPGSGKTRVLTRKIAYQAIKHDGSLKRIIAITYTNRAA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+     +   + D+I                                  + V T
Sbjct: 69  EEIKERL-----SLLSIDDDI---------------------------------NIWVGT 90

Query: 136 IHAFCEAIMQQFPLEANI---TSHFAIADEEQSKKLIEEA 172
           IH FC   +  +P + N+   +  F I D+   +  + + 
Sbjct: 91  IHQFCLEFI-IYPFKMNLSRVSKGFTIIDDYTQRAYVSQI 129


>gi|48478317|ref|YP_024023.1| ATP-dependent DNA helicase [Picrophilus torridus DSM 9790]
 gi|48430965|gb|AAT43830.1| ATP-dependent DNA helicase [Picrophilus torridus DSM 9790]
          Length = 852

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 33/125 (26%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            +  + AN G+GKT  + + V RL+     PS++LC+T T  A  EM  R+  ++     
Sbjct: 2   ENTLIIANPGTGKTMTIAESVARLIFNGEDPSSILCITFTNRAVDEMRSRIESMLKKM-- 59

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                                           I      L + T H++    ++ F    
Sbjct: 60  -------------------------------NIKINIMDLNITTFHSYAYNYIKDFIENR 88

Query: 152 NITSH 156
           NI S+
Sbjct: 89  NIVSN 93


>gi|300819206|ref|ZP_07099407.1| UvrD/REP helicase [Escherichia coli MS 107-1]
 gi|300925355|ref|ZP_07141242.1| UvrD/REP helicase [Escherichia coli MS 182-1]
 gi|301327207|ref|ZP_07220469.1| UvrD/REP helicase [Escherichia coli MS 78-1]
 gi|300418522|gb|EFK01833.1| UvrD/REP helicase [Escherichia coli MS 182-1]
 gi|300528225|gb|EFK49287.1| UvrD/REP helicase [Escherichia coli MS 107-1]
 gi|300846188|gb|EFK73948.1| UvrD/REP helicase [Escherichia coli MS 78-1]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|300902873|ref|ZP_07120819.1| UvrD/REP helicase [Escherichia coli MS 84-1]
 gi|301302421|ref|ZP_07208552.1| UvrD/REP helicase [Escherichia coli MS 124-1]
 gi|300405086|gb|EFJ88624.1| UvrD/REP helicase [Escherichia coli MS 84-1]
 gi|300842260|gb|EFK70020.1| UvrD/REP helicase [Escherichia coli MS 124-1]
 gi|315258011|gb|EFU37979.1| UvrD/REP helicase [Escherichia coli MS 85-1]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|222444649|ref|ZP_03607164.1| hypothetical protein METSMIALI_00261 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434214|gb|EEE41379.1| hypothetical protein METSMIALI_00261 [Methanobrevibacter smithii
           DSM 2375]
          Length = 823

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           S    ++ ++S    S ++ A  GSGKT ++V ++L+ + + +  P  +L  T T+ AA 
Sbjct: 25  SNEDQKKAISSHANESLFIVAGPGSGKTTVIVLKILKYIFVDDIAPDEILATTFTRKAAN 84

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+L          D+I +  +  I    P K          I        + + T 
Sbjct: 85  ELHSRILSW-------GDQIKNYLLDNIVEDDPVKEMELMD---FIEKKIDLNKINIGTT 134

Query: 137 HAFCEAIMQQF 147
            +  E +++  
Sbjct: 135 DSVAEDLLRIH 145


>gi|148642173|ref|YP_001272686.1| DNA helicase [Methanobrevibacter smithii ATCC 35061]
 gi|148551190|gb|ABQ86318.1| DNA helicase [Methanobrevibacter smithii ATCC 35061]
          Length = 819

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           S    ++ ++S    S ++ A  GSGKT ++V ++L+ + + +  P  +L  T T+ AA 
Sbjct: 21  SNEDQKKAISSHANESLFIVAGPGSGKTTVIVLKILKYIFVDDIAPDEILATTFTRKAAN 80

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+L          D+I +  +  I    P K          I        + + T 
Sbjct: 81  ELHSRILSW-------GDQIKNYLLDNIVEDDPVKEMELMD---FIEKKIDLNKINIGTT 130

Query: 137 HAFCEAIMQQF 147
            +  E +++  
Sbjct: 131 DSVAEDLLRIH 141


>gi|153950402|ref|YP_001399975.1| exonuclease V subunit beta [Yersinia pseudotuberculosis IP 31758]
 gi|152961897|gb|ABS49358.1| exodeoxyribonuclease V, beta subunit [Yersinia pseudotuberculosis
           IP 31758]
          Length = 1220

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+ + 
Sbjct: 21  LIEASAGTGKTFTIGVLYLRLLLGLGGDAAFRRPLMVEEILVVTFTEAATEELRGRIRDN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I          +S +    Q      +D + A   L+          + TIH FC+ ++ 
Sbjct: 81  IHGLRIACVRGVSDDPM-YQALLAEITDWAVAAAQLLAAERQMDEAAIYTIHGFCQRMLA 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F     +    L  +A       
Sbjct: 140 NNAFESGI--LFEQTLVQDELPLWRQACADFWRR 171


>gi|51597340|ref|YP_071531.1| exonuclease V subunit beta [Yersinia pseudotuberculosis IP 32953]
 gi|108806489|ref|YP_650405.1| exonuclease V subunit beta [Yersinia pestis Antiqua]
 gi|108813141|ref|YP_648908.1| exonuclease V subunit beta [Yersinia pestis Nepal516]
 gi|145598977|ref|YP_001163053.1| exonuclease V subunit beta [Yersinia pestis Pestoides F]
 gi|149366978|ref|ZP_01889011.1| exodeoxyribonuclease V beta chain [Yersinia pestis CA88-4125]
 gi|162420885|ref|YP_001607582.1| exonuclease V subunit beta [Yersinia pestis Angola]
 gi|165927070|ref|ZP_02222902.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166011533|ref|ZP_02232431.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212838|ref|ZP_02238873.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399985|ref|ZP_02305503.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419811|ref|ZP_02311564.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425407|ref|ZP_02317160.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468472|ref|ZP_02333176.1| exonuclease V subunit beta [Yersinia pestis FV-1]
 gi|170023292|ref|YP_001719797.1| exonuclease V subunit beta [Yersinia pseudotuberculosis YPIII]
 gi|186896447|ref|YP_001873559.1| exonuclease V subunit beta [Yersinia pseudotuberculosis PB1/+]
 gi|218928189|ref|YP_002346064.1| exonuclease V subunit beta [Yersinia pestis CO92]
 gi|229837728|ref|ZP_04457888.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
           Pestoides A]
 gi|229840949|ref|ZP_04461108.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843049|ref|ZP_04463199.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229903584|ref|ZP_04518697.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
           Nepal516]
 gi|270487366|ref|ZP_06204440.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis KIM D27]
 gi|51590622|emb|CAH22263.1| exodeoxyribonuclease V beta chain [Yersinia pseudotuberculosis IP
           32953]
 gi|108776789|gb|ABG19308.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Yersinia pestis
           Nepal516]
 gi|108778402|gb|ABG12460.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Yersinia pestis
           Antiqua]
 gi|115346800|emb|CAL19686.1| exodeoxyribonuclease V beta chain [Yersinia pestis CO92]
 gi|145210673|gb|ABP40080.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Yersinia pestis
           Pestoides F]
 gi|149290592|gb|EDM40668.1| exodeoxyribonuclease V beta chain [Yersinia pestis CA88-4125]
 gi|162353700|gb|ABX87648.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis Angola]
 gi|165920966|gb|EDR38190.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989481|gb|EDR41782.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206130|gb|EDR50610.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962552|gb|EDR58573.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050693|gb|EDR62101.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055807|gb|EDR65591.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749826|gb|ACA67344.1| exodeoxyribonuclease V, beta subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699473|gb|ACC90102.1| exodeoxyribonuclease V, beta subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679354|gb|EEO75457.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
           Nepal516]
 gi|229689925|gb|EEO81984.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697315|gb|EEO87362.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704105|gb|EEO91117.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
           Pestoides A]
 gi|270335870|gb|EFA46647.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis KIM D27]
          Length = 1220

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+ + 
Sbjct: 21  LIEASAGTGKTFTIGVLYLRLLLGLGGDAAFRRPLMVEEILVVTFTEAATEELRGRIRDN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I          +S +    Q      +D + A   L+          + TIH FC+ ++ 
Sbjct: 81  IHGLRIACVRGVSDDPM-YQALLAEITDWAVAAAQLLAAERQMDEAAIYTIHGFCQRMLA 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F     +    L  +A       
Sbjct: 140 NNAFESGI--LFEQTLVQDELPLWRQACADFWRR 171


>gi|309795048|ref|ZP_07689468.1| UvrD/REP helicase [Escherichia coli MS 145-7]
 gi|308121352|gb|EFO58614.1| UvrD/REP helicase [Escherichia coli MS 145-7]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|301643487|ref|ZP_07243534.1| UvrD/REP helicase [Escherichia coli MS 146-1]
 gi|301078126|gb|EFK92932.1| UvrD/REP helicase [Escherichia coli MS 146-1]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|283782936|ref|YP_003373690.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
 gi|283441282|gb|ADB13748.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
          Length = 515

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
            +D +  ++ E   A +      + A AG+GKT  + +R+          P  +L +T +
Sbjct: 23  LLDGLDNSQREAATALE--GPVRIIACAGAGKTRTITRRIAYACATGKWDPERVLAVTFS 80

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITIL 125
             AAAEM  R+  +  +         SA + +I+    +       S M+ ++ ++ + L
Sbjct: 81  VKAAAEMRSRIEALGVSNVGCVSTFHSAALQQIRSVWNDVCSAQFPSIMNDSQQIIASAL 140

Query: 126 ETPGGLKVQTI 136
           +        T+
Sbjct: 141 KRYPDFADMTL 151


>gi|300896343|ref|ZP_07114885.1| UvrD/REP helicase [Escherichia coli MS 198-1]
 gi|300359754|gb|EFJ75624.1| UvrD/REP helicase [Escherichia coli MS 198-1]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|331676752|ref|ZP_08377448.1| helicase IV (75 kDa helicase) [Escherichia coli H591]
 gi|331075441|gb|EGI46739.1| helicase IV (75 kDa helicase) [Escherichia coli H591]
 gi|332102207|gb|EGJ05553.1| DNA helicase IV [Shigella sp. D9]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|300920996|ref|ZP_07137384.1| UvrD/REP helicase [Escherichia coli MS 115-1]
 gi|300412042|gb|EFJ95352.1| UvrD/REP helicase [Escherichia coli MS 115-1]
 gi|324019098|gb|EGB88317.1| UvrD/REP helicase [Escherichia coli MS 117-3]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|300929663|ref|ZP_07145123.1| UvrD/REP helicase [Escherichia coli MS 187-1]
 gi|300949666|ref|ZP_07163649.1| UvrD/REP helicase [Escherichia coli MS 116-1]
 gi|300955382|ref|ZP_07167759.1| UvrD/REP helicase [Escherichia coli MS 175-1]
 gi|331641491|ref|ZP_08342626.1| helicase IV (75 kDa helicase) [Escherichia coli H736]
 gi|300317717|gb|EFJ67501.1| UvrD/REP helicase [Escherichia coli MS 175-1]
 gi|300450935|gb|EFK14555.1| UvrD/REP helicase [Escherichia coli MS 116-1]
 gi|300462401|gb|EFK25894.1| UvrD/REP helicase [Escherichia coli MS 187-1]
 gi|331038289|gb|EGI10509.1| helicase IV (75 kDa helicase) [Escherichia coli H736]
          Length = 715

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|228996423|ref|ZP_04156064.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock3-17]
 gi|228763306|gb|EEM12212.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock3-17]
          Length = 687

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 73/219 (33%), Gaps = 52/219 (23%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ + N HP  +L LT T+ AA E
Sbjct: 51  LNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLINVKNVHPRNILLLTFTQKAAEE 110

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV  +       S  +++                                    T H
Sbjct: 111 IRSRVANLPGMNHAASQYVVA-----------------------------------GTFH 135

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +    +++       I     +A+E+  + +I++  K     +  D + E   A   + +
Sbjct: 136 SVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKEL--RLKDDYDAETMLAMISLEK 188

Query: 198 ISNDE--------DIETLISDIISNRTALKLIFFFFSYL 228
              +          +E    ++      +K  + +  + 
Sbjct: 189 NKLNRPKDVQAKTPVEQEFREVYERYEDVKQRYGYIDFD 227


>gi|291538486|emb|CBL11597.1| Superfamily I DNA and RNA helicases [Roseburia intestinalis XB6B4]
          Length = 613

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +S   S+            V A  GSGKT ++ +R   L+      P+ +L +T TKAAA
Sbjct: 1   MSFNASQTRAIHHKNGPMLVLAGPGSGKTLVITERTKYLIEECGIDPAQILVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            EM  R    +     ++     A    I     N S  + AR 
Sbjct: 61  TEMKRRFQRKMNRSCPVTFGTFHAVYFAILKHAYNYSADNIARE 104


>gi|288869771|ref|ZP_05976228.2| UvrD/REP helicase family protein [Methanobrevibacter smithii DSM
           2374]
 gi|288860429|gb|EFC92727.1| UvrD/REP helicase family protein [Methanobrevibacter smithii DSM
           2374]
          Length = 823

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           S    ++ ++S    S ++ A  GSGKT ++V ++L+ + + +  P  +L  T T+ AA 
Sbjct: 25  SNEDQKKAISSHANESLFIVAGPGSGKTTVIVLKILKYIFVDDIAPDEILATTFTRKAAN 84

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+L          D+I +  +  I    P K          I        + + T 
Sbjct: 85  ELHSRILSW-------GDQIKNYLLDNIVEDDPVKEMELMD---FIEKKIDLNKINIGTT 134

Query: 137 HAFCEAIMQQF 147
            +  E +++  
Sbjct: 135 DSVAEDLLRIH 145


>gi|191171213|ref|ZP_03032763.1| exodeoxyribonuclease V, beta subunit [Escherichia coli F11]
 gi|300995845|ref|ZP_07181277.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 200-1]
 gi|190908513|gb|EDV68102.1| exodeoxyribonuclease V, beta subunit [Escherichia coli F11]
 gi|300304700|gb|EFJ59220.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 200-1]
 gi|324011667|gb|EGB80886.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 60-1]
          Length = 1180

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     +     ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYARLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLTREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|239907370|ref|YP_002954111.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239797236|dbj|BAH76225.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 646

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 45/217 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +S    +   A   T  A V A  GSGKT  + +R+ RL+      P  +L LT+T+ AA
Sbjct: 28  MSLNAKQLEAAQFHTGIALVVAVPGSGKTKTMTERIGRLVNDHGVAPENILGLTYTRQAA 87

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R+  ++   +                                        + + T
Sbjct: 88  EQMRERLELVLHGEA--------------------------------------SRVNLYT 109

Query: 136 IHAFCEAIMQQFPLEANITSHFA----IADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           IH+FC  +++      NI S       +A   +S  + + A    L  I L  +  +   
Sbjct: 110 IHSFCLRLLKSEGRYFNIVSGSEQMTMVATIMRSLGVKDLAIGGVLQDISLAKSNCISP- 168

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
             E +++  ++  +   + +       K I + + + 
Sbjct: 169 -EEFIDLYGEDQSKQKTAMVFKEYEEQKTIRYLYDFD 204


>gi|289769236|ref|ZP_06528614.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
 gi|289699435|gb|EFD66864.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 1165

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D      +++ +    +    V A  G+GKT  LV+ V   +     P  +L LT ++ A
Sbjct: 34  DPPRLDAAQRAVVDHRSGPLLVLAGPGTGKTTTLVESVADRIARGGDPERILVLTFSRKA 93

Query: 75  AAEMSHRVLEIITAW 89
           A E+  R+   I A 
Sbjct: 94  AVELRDRMALRIGAA 108


>gi|257054814|ref|YP_003132646.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
          43017]
 gi|256584686|gb|ACU95819.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
          43017]
          Length = 694

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 6  SFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
          S    +   D +     EQ  A+  P     + A AG+GKT  +  R+  L+       +
Sbjct: 3  STHRLNRLRDPLEGLDPEQRAAASAPRGPVCILAGAGTGKTRTITHRIAYLVRQGHVAAT 62

Query: 64 TLLCLTHTKAAAAEMSHRVLEI 85
           +L +T T  AA E+  R+  +
Sbjct: 63 QVLAVTFTARAAGELRTRLRHL 84


>gi|289763380|ref|ZP_06522758.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          GM 1503]
 gi|289710886|gb|EFD74902.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          GM 1503]
          Length = 296

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          LI+    +Q  A   P     V A AG+GKT  +  R+  L+ +       +L +T T+ 
Sbjct: 8  LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+  +
Sbjct: 68 AAGEMRSRLRAL 79


>gi|325963965|ref|YP_004241871.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470052|gb|ADX73737.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 711

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSH 80
            ++ +AS       V A AG+GKT  +  R+   + +  + P  LL +T T  AAAEM  
Sbjct: 23  EQREVASTLNGPLCVLAGAGTGKTRAITHRIAYGVHSGVYTPQRLLAVTFTARAAAEMRS 82

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETPGGLKVQ 134
           R+ + + A +  +    +A + ++Q   P          +     LL    E    L++ 
Sbjct: 83  RLRD-LGAGNVQARTFHAAALRQLQFFWPQAVGGTLPQLLDHKAQLLA---EAARRLRLS 138

Query: 135 T 135
           T
Sbjct: 139 T 139


>gi|315293808|gb|EFU53160.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 153-1]
          Length = 1180

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     +     ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYARLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLTREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|118469673|ref|YP_886318.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118170960|gb|ABK71856.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 716

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
          S T++ +   + E +LA  P     V A AG+GKT  + +R+  L+         +L +T
Sbjct: 17 SPTLEDLDDEQREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVAGGHVAAGQVLAVT 74

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AA EM  R+  +
Sbjct: 75 FTARAAGEMRARLRAL 90


>gi|323976658|gb|EGB71746.1| UvrD/REP helicase [Escherichia coli TW10509]
          Length = 684

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHSLALHIIQQGSKKVPTVSK 295


>gi|145218885|ref|YP_001129594.1| UvrD/REP helicase [Prosthecochloris vibrioformis DSM 265]
 gi|145205049|gb|ABP36092.1| UvrD/REP helicase [Chlorobium phaeovibrioides DSM 265]
          Length = 1065

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 73/197 (37%), Gaps = 35/197 (17%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           A AGSGKT+ + + +   +      P  ++ +T+T+ AAAE+  R+ E +     L +  
Sbjct: 12  AGAGSGKTYKIQKTLGEWVKEGKVAPEKIVAVTYTETAAAELVGRIREELVQEGMLDEAF 71

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                               + TIH F   I+Q+F  +A I+  
Sbjct: 72  ------------------------------RLESAYISTIHGFGRRILQEFAFDAGISPT 101

Query: 157 FAIADEEQSKKLIEEAKKSTLASI-MLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
                +++   L  +    + +++ +++  EE    F    + + ++     + +I    
Sbjct: 102 LRKISKDEETMLAGKVLAGSPSAVGLMETLEEDGYGFNFGTKATAEDGFRKRLLNIT--- 158

Query: 216 TALKLIFFFFSYLWRRK 232
             L+ +    S  W  +
Sbjct: 159 DQLRSLSGATSPEWLEE 175


>gi|332092491|gb|EGI97564.1| helicase IV [Shigella boydii 5216-82]
          Length = 684

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 DQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|281600327|gb|ADA73311.1| DNA helicase IV [Shigella flexneri 2002017]
          Length = 707

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 205 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 264

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 265 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 307


>gi|227884078|ref|ZP_04001883.1| helicase IV [Escherichia coli 83972]
 gi|300978349|ref|ZP_07174222.1| UvrD/REP helicase [Escherichia coli MS 45-1]
 gi|301047779|ref|ZP_07194833.1| UvrD/REP helicase [Escherichia coli MS 185-1]
 gi|26107384|gb|AAN79567.1|AE016758_171 Helicase IV [Escherichia coli CFT073]
 gi|227838830|gb|EEJ49296.1| helicase IV [Escherichia coli 83972]
 gi|300300342|gb|EFJ56727.1| UvrD/REP helicase [Escherichia coli MS 185-1]
 gi|300409694|gb|EFJ93232.1| UvrD/REP helicase [Escherichia coli MS 45-1]
 gi|307552794|gb|ADN45569.1| DNA helicase IV [Escherichia coli ABU 83972]
 gi|315291182|gb|EFU50542.1| UvrD/REP helicase [Escherichia coli MS 153-1]
          Length = 715

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P  +
Sbjct: 216 YADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASPEQI 275

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
           L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 276 LLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|323190776|gb|EFZ76045.1| helicase IV [Escherichia coli RN587/1]
          Length = 684

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|187918490|ref|YP_001884053.1| exodeoxyribonuclease V beta chain [Borrelia hermsii DAH]
 gi|119861338|gb|AAX17133.1| exodeoxyribonuclease V beta chain [Borrelia hermsii DAH]
          Length = 1157

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 25/150 (16%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                + A+AG+GKT+ L   +  LL+     PS +L LT TK A  EM  R+L+ I   
Sbjct: 22  NEKILIEASAGTGKTYTLENTITNLLINKMYSPSEILVLTFTKKATEEMHIRILKSIE-- 79

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK    L TI E    + + TI+ F    +  F +
Sbjct: 80  --------------------NAYQNSKTDKSLKTIYEQSNKIFISTINKFALYALNNFQI 119

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           E    S +++ +   S+  I+E     L  
Sbjct: 120 ETENFSKYSVKENFTSE--IDEIVYEFLRK 147


>gi|154503894|ref|ZP_02040954.1| hypothetical protein RUMGNA_01720 [Ruminococcus gnavus ATCC
          29149]
 gi|153795493|gb|EDN77913.1| hypothetical protein RUMGNA_01720 [Ruminococcus gnavus ATCC
          29149]
          Length = 610

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +S  +++Q   S       V A  GSGKT  +V R+ +L+   +  P  +L +T TK AA
Sbjct: 1  MSFNQAQQEAVSHNEGPCLVLAGPGSGKTLTIVGRIQKLIQTYHVSPEEILVITFTKYAA 60

Query: 76 AEMSHRVLEIITA 88
           EM +R    +  
Sbjct: 61 VEMKNRFFSAMKG 73


>gi|83282597|ref|XP_729839.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488804|gb|EAA21404.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 215

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 16/169 (9%)

Query: 16  LISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           L      EQ+         +  + A  GSGKT  L  R+++ ++      +++C+T T  
Sbjct: 33  LFRNLSEEQIKIVQVPLEYNLCIIACPGSGKTSTLTARIIKSIIERKK--SIVCITFTNY 90

Query: 74  AAAEMSHRVLEIITAWSHLS-----DEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           +A ++  ++++ I     L         L      I G K         + +     +  
Sbjct: 91  SAKDLKEKIIKKINCLIDLCTGKEIQNKLFNRNKNIGGNKIRNKKYDINKTMYKNKFKVL 150

Query: 129 G-GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
              + + TIH+FC  I+            F I  E  +  +I+ A  + 
Sbjct: 151 DTTIFIGTIHSFCRYIL------LKYKGEFKILTELINSNVIKMAFNNF 193


>gi|325916739|ref|ZP_08178995.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537048|gb|EGD08788.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 1245

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 31/179 (17%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA--------------AAEMS 79
            + A+AG+GKT  L     RL++        +L +T T+AA              AA + 
Sbjct: 19  LIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAATQELRRRIRERLVLAATLV 78

Query: 80  -HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-------ARHLLITILETPGGL 131
               +    A +  +++  +A    +       + ++         R  L   +E     
Sbjct: 79  PDAAVGAAPAANAPNEDAPTAAPDALLTCALLTAHLAHGEETPAALRRRLQQAVEEIDLA 138

Query: 132 KVQTIHAFCEAIMQQFPLEAN--------ITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            V TIH FC  ++++  LE+         + +   +  E  +    + A  + +A  ++
Sbjct: 139 AVFTIHGFCARVLREHALESGQAFAAPQLLANDRELLGEVAADLWRQRAADAAMAEDLI 197


>gi|26249249|ref|NP_755289.1| exonuclease V subunit beta [Escherichia coli CFT073]
 gi|26109656|gb|AAN81859.1|AE016765_261 Exodeoxyribonuclease V beta chain [Escherichia coli CFT073]
          Length = 1183

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     +     ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYARLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLTREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|323946506|gb|EGB42531.1| exodeoxyribonuclease V [Escherichia coli H120]
          Length = 925

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 83  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 141 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 193

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 194 QALLRDI 200


>gi|227888383|ref|ZP_04006188.1| exodeoxyribonuclease V [Escherichia coli 83972]
 gi|300980536|ref|ZP_07175062.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 45-1]
 gi|301049388|ref|ZP_07196352.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 185-1]
 gi|227834652|gb|EEJ45118.1| exodeoxyribonuclease V [Escherichia coli 83972]
 gi|300298830|gb|EFJ55215.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 185-1]
 gi|300409236|gb|EFJ92774.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 45-1]
 gi|307554813|gb|ADN47588.1| exodeoxyribonuclease V beta chain [Escherichia coli ABU 83972]
          Length = 1180

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     +     ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYARLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLTREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|255539935|ref|XP_002511032.1| ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
 gi|223550147|gb|EEF51634.1| ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
          Length = 1089

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 53/181 (29%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           + N  +E+S+ +  ++  + E    +  +    + A  GSGK                 P
Sbjct: 199 HGNMPEEYSKYLQSLNNRQREA-ACTHISIPLMIVAGPGSGK--------------GIGP 243

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           + +L +T T +AA+EM  R+  +                                     
Sbjct: 244 TNILAMTFTTSAASEMRDRIGGVAGKAIAKE----------------------------- 274

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                   L + T H+F   + +    +   TS F I      ++ I EA +  L     
Sbjct: 275 --------LTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGHQRRAIIEAVR-LLEKEKT 325

Query: 183 D 183
           D
Sbjct: 326 D 326


>gi|110804978|ref|YP_688498.1| DNA helicase IV [Shigella flexneri 5 str. 8401]
 gi|110614526|gb|ABF03193.1| DNA helicase IV [Shigella flexneri 5 str. 8401]
          Length = 707

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 205 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 264

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 265 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 307


>gi|71657390|ref|XP_817211.1| ATP-dependent DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882388|gb|EAN95360.1| ATP-dependent DNA helicase, putative [Trypanosoma cruzi]
          Length = 834

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 76/215 (35%), Gaps = 42/215 (19%)

Query: 16  LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           L+S     Q  A   D + S  + A AGSGKT  +  R+  ++L+   P  +L L  ++ 
Sbjct: 29  LVSALDEAQRAAVCEDTSASLLILAGAGSGKTLTMASRIAYIILSGVAPEKILGLCFSRQ 88

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA  +  RV  ++                                    ++      LK+
Sbjct: 89  AAEALRERVATVLP----------------------------------PSMAAHVQRLKL 114

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           +T HAF    +++      I     + D  + ++L   A     A  +     E   A  
Sbjct: 115 KTFHAFGLECLRRHGC---IDLATEVYDARRQREL---ASAVVEAHALHHKGLEAVLALV 168

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
           E +  +  +      ++I  +R A  L  F+ + L
Sbjct: 169 EYVNKAKTKKDMRAGTEIDPSRQAAYLFRFYQAML 203


>gi|323154796|gb|EFZ40990.1| exodeoxyribonuclease V, beta subunit [Escherichia coli EPECa14]
          Length = 1013

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|331658967|ref|ZP_08359909.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA206]
 gi|315295774|gb|EFU55091.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 16-3]
 gi|331053549|gb|EGI25578.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA206]
          Length = 1180

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     +     ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYARLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLTREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|325498396|gb|EGC96255.1| exonuclease V subunit beta [Escherichia fergusonii ECD227]
          Length = 1173

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGASAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I     + L D   +     +  +  +K   ++A   L+          V TIH FC+ +
Sbjct: 70  IHELRIACLRDTTDNPLYASLLEEIDDK---AQAAQWLLLAERQMDEAAVFTIHGFCQRM 126

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +     E+ +     + ++E    L  +A              E+ +  +E       + 
Sbjct: 127 LNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKG 179

Query: 204 IETLISDI 211
            + L+ DI
Sbjct: 180 PQALLRDI 187


>gi|54026506|ref|YP_120748.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM
          10152]
 gi|54018014|dbj|BAD59384.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM
          10152]
          Length = 716

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           +DL +    +      P     V A AG+GKT  +  R+  L+ A       +L +T T
Sbjct: 7  ALDLAALDPEQAAAVRAPRGPVCVLAGAGTGKTRTITYRIAHLVEAGHVKADQVLAVTFT 66

Query: 72 KAAAAEMSHRVLEI 85
            AA E+  R+  +
Sbjct: 67 ARAAGELRGRLRAL 80


>gi|323160037|gb|EFZ46001.1| exodeoxyribonuclease V beta chain domain protein [Escherichia coli
           E128010]
          Length = 542

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|300718152|ref|YP_003742955.1| Exodeoxyribonuclease V beta chain [Erwinia billingiae Eb661]
 gi|299063988|emb|CAX61108.1| Exodeoxyribonuclease V beta chain [Erwinia billingiae Eb661]
          Length = 1181

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA AE+  R+ E 
Sbjct: 20  LIEASAGTGKTFTIGLLYLRLLLGLGGEAAYSRPLPVEEILVVTFTEAATAELRGRIREN 79

Query: 86  ITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I     + +  +     +  +  + P+    +         ++  G   + TIH FC+ +
Sbjct: 80  IHKLRIACVRGQSSDVMLAHLLEQIPDLQQAAAQLLAAERQMDDAG---IFTIHGFCQRM 136

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +     E+ +     + ++E    L  +A       
Sbjct: 137 LNLNAFESGMLFEQQLIEDE--YPLRRQATADFWRR 170


>gi|163839985|ref|YP_001624390.1| superfamily I DNA/RNA helicase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953461|gb|ABY22976.1| superfamily I DNA and RNA helicase [Renibacterium salmoninarum ATCC
           33209]
          Length = 714

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L    + + L+A+  +    V A AG+GKT  +  R+   +L  + +P  LL +T T  A
Sbjct: 10  LAGLDEEQLLVATTLSGPVCVLAGAGTGKTRAITHRIAYGVLGGSYNPQRLLAVTFTARA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGL 131
           AAEM  R+ + +   S  +    +A + ++Q   P     +      H    I E+   L
Sbjct: 70  AAEMRTRLRD-LGVGSVQARTFHAAALRQLQFFWPQVVGGALPGLLDHKAALIAESARRL 128

Query: 132 KVQT 135
           ++ T
Sbjct: 129 RLST 132


>gi|53802296|ref|YP_113003.1| ATP-dependent DNA helicase UvrD [Methylococcus capsulatus str. Bath]
 gi|53756057|gb|AAU90348.1| ATP-dependent DNA helicase, UvrD/REP family [Methylococcus capsulatus
            str. Bath]
          Length = 1469

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 74/200 (37%), Gaps = 31/200 (15%)

Query: 12   ETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
              ++ +     ++++A D  + +  V A  GSGKT +LV R+  L+ +   +P  +L L 
Sbjct: 845  NIVESLQNPAQQRIVADDREQTNVLVLAGPGSGKTRVLVHRIAYLIRVRRENPRGILALA 904

Query: 70   HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            + + AAAE+  R+  +I   +     +    +              K             
Sbjct: 905  YNRHAAAEIRKRLAGLIGDDARGITVLTCHALAMRLAGVSFAERWEK------------- 951

Query: 130  GLKVQTIHAFCEAIMQQFPLEA---NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 T     + +++Q         +      ADE++ + L      +    I++D  +
Sbjct: 952  -----TGDEVFQEVLRQAIALLKGEGLPP--EEADEQRDRLL------AGYRWILVDEYQ 998

Query: 187  ELKKAFYEILEISNDEDIET 206
            ++    YE++       ++ 
Sbjct: 999  DIGPDQYELISALAGRTLQD 1018


>gi|309786700|ref|ZP_07681320.1| helicase IV [Shigella dysenteriae 1617]
 gi|308925393|gb|EFP70880.1| helicase IV [Shigella dysenteriae 1617]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL+   A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLVRGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIREWLHTEDITARTFHALALHIIQ 284


>gi|218550068|ref|YP_002383859.1| exonuclease V subunit beta [Escherichia fergusonii ATCC 35469]
 gi|218357609|emb|CAQ90248.1| exonuclease V (RecBCD complex), beta subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 1186

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 23  LIEASAGTGKTFTIAALYLRLLLGLGGASAFPRPLTVEELLVVTFTEAATAELRGRIRSN 82

Query: 86  ITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I     + L D   +     +  +  +K   ++A   L+          V TIH FC+ +
Sbjct: 83  IHELRIACLRDTTDNPLYASLLEEIDDK---AQAAQWLLLAERQMDEAAVFTIHGFCQRM 139

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +     E+ +     + ++E    L  +A              E+ +  +E       + 
Sbjct: 140 LNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKG 192

Query: 204 IETLISDI 211
            + L+ DI
Sbjct: 193 PQALLRDI 200


>gi|33319803|gb|AAQ05776.1|AF478168_1 exodeoxyribonuclease V [Borrelia hermsii]
 gi|37727294|gb|AAO39714.1| exodeoxynuclease V beta chain [Borrelia hermsii]
          Length = 1146

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 25/150 (16%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                + A+AG+GKT+ L   +  LL+     PS +L LT TK A  EM  R+L+ I   
Sbjct: 11  NEKILIEASAGTGKTYTLENTITNLLINKMYSPSEILVLTFTKKATEEMHIRILKSIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK    L TI E    + + TI+ F    +  F +
Sbjct: 69  --------------------NAYQNSKTDKSLKTIYEQSNKIFISTINKFALYALNNFQI 108

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           E    S +++ +   S+  I+E     L  
Sbjct: 109 ETENFSKYSVKENFTSE--IDEIVYEFLRK 136


>gi|82776253|ref|YP_402602.1| DNA helicase IV [Shigella dysenteriae Sd197]
 gi|81240401|gb|ABB61111.1| DNA helicase IV [Shigella dysenteriae Sd197]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL+   A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLVRGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIREWLHTEDITARTFHALALHIIQ 284


>gi|218700518|ref|YP_002408147.1| DNA helicase IV [Escherichia coli IAI39]
 gi|218370504|emb|CAR18311.1| DNA helicase IV [Escherichia coli IAI39]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|302536766|ref|ZP_07289108.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
 gi|302445661|gb|EFL17477.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
          Length = 772

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 2/106 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
              ++ +A+       V A AG+GKT  +  R+   + +    P+++L +T T  AA EM
Sbjct: 76  DPEQREVATTLRGPVCVLAGAGTGKTRAITHRIAYGVRSGQLMPASVLAVTFTNRAAGEM 135

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
             R+   + A    +    SA + ++Q   P        R L   I
Sbjct: 136 RGRLRS-LGAGGVQARTFHSAALRQLQYFWPRAIGGEVPRLLERKI 180


>gi|222034534|emb|CAP77276.1| exodeoxyribonuclease V beta chain [Escherichia coli LF82]
 gi|312947371|gb|ADR28198.1| exonuclease V subunit beta [Escherichia coli O83:H1 str. NRG 857C]
          Length = 1180

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     +     ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYARLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLTREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|21223552|ref|NP_629331.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714471|emb|CAC01313.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 1159

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D      +++ +    +    V A  G+GKT  LV+ V   +     P  +L LT ++ A
Sbjct: 34  DPPRLDAAQRAVVDHRSGPLLVLAGPGTGKTTTLVESVADRIARGGDPERILVLTFSRKA 93

Query: 75  AAEMSHRVLEIITAW 89
           A E+  R+   I A 
Sbjct: 94  AVELRDRMALRIGAA 108


>gi|320178594|gb|EFW53559.1| DNA helicase IV [Shigella boydii ATCC 9905]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|293409341|ref|ZP_06652917.1| helD [Escherichia coli B354]
 gi|291469809|gb|EFF12293.1| helD [Escherichia coli B354]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|284920807|emb|CBG33870.1| helicase IV [Escherichia coli 042]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|194432359|ref|ZP_03064646.1| helicase IV [Shigella dysenteriae 1012]
 gi|194419246|gb|EDX35328.1| helicase IV [Shigella dysenteriae 1012]
 gi|332095922|gb|EGJ00929.1| helicase IV [Shigella dysenteriae 155-74]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|293610155|ref|ZP_06692456.1| exonuclease subunit V [Acinetobacter sp. SH024]
 gi|292827387|gb|EFF85751.1| exonuclease subunit V [Acinetobacter sp. SH024]
          Length = 1232

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       D
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPRQVIATTFTRAAAAELKSRIRARLVETYRYLD 81

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    ++  +   + D+             + A   L  +++    L V T+ +F +
Sbjct: 82  AKRSFTEHELITQAEQEPDLLLQHILKHFATRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +    + +  A Y   E+ + 
Sbjct: 142 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQPQTVIDALYLAGELKSV 199

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 200 DSFVKLVEDSLN 211


>gi|258652354|ref|YP_003201510.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555579|gb|ACV78521.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 1099

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75
           +S T  ++ +     R   V A  G+GKT  LV+ V  R+++    P  +L LT ++ AA
Sbjct: 45  VSPTPEQRAVIDHAGRRLRVLAGPGTGKTATLVEAVAERIMVRGVPPEQILVLTFSRRAA 104

Query: 76  AEMSHRVLEIITAWSHLS 93
           AE++ R+ + ++  +   
Sbjct: 105 AELTSRITQRLSVTTREP 122


>gi|312964904|ref|ZP_07779144.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 2362-75]
 gi|312290460|gb|EFR18340.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 2362-75]
          Length = 1170

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYKHLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLHYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|108797875|ref|YP_638072.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           sp. MCS]
 gi|119866969|ref|YP_936921.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           sp. KMS]
 gi|108768294|gb|ABG07016.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           sp. MCS]
 gi|119693058|gb|ABL90131.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           sp. KMS]
          Length = 1115

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 9/177 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL----E 84
           P  +  + A+AG+GKT  L   V R +   A     +L +T  +AA+ E+  RV     +
Sbjct: 24  PLTTTVLEASAGTGKTFALAGLVTRYIAEGAATLDQMLLVTFGRAASQELRERVRCQMLD 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            + A+   S    +  +  +     ++  + K R  L   L       + T H FC+ ++
Sbjct: 84  ALVAFEDPSTVGDNQLVEHLIDAPDDERHLRKQR--LKDALAGFDAATIATTHQFCQLVL 141

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           +   +  +  +   + +      L  E       +      ++      + LE++ +
Sbjct: 142 KSLGVAGDTDTGVQLVESLD--DLTAEIVDDLYLAHFGQQRDDPVMTRGQALELARE 196


>gi|324114889|gb|EGC08855.1| exodeoxyribonuclease V [Escherichia fergusonii B253]
          Length = 1183

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGASAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I     + L D   +     +  +  +K   ++A   L+          V TIH FC+ +
Sbjct: 80  IHELRIACLRDTTDNPLYASLLEEIDDK---AQAAQWLLLAERQMDEAAVFTIHGFCQRM 136

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +     E+ +     + ++E    L  +A              E+ +  +E       + 
Sbjct: 137 LNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKG 189

Query: 204 IETLISDI 211
            + L+ DI
Sbjct: 190 PQALLRDI 197


>gi|322488966|emb|CBZ24215.1| putative ATP-dependent DNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 984

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 44/182 (24%)

Query: 20  TKSEQLLASDPTRSAWVS-ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             S+   A+ P  +A +  A AGSGKT  +  R+  LL +     ++L +  T+ AA  +
Sbjct: 2   DDSQIRAATYPADAALILQAGAGSGKTQTMAARIAYLLQSGVPGHSILGICFTRQAAETL 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +                                    T+      LK++T HA
Sbjct: 62  RERVRSTLP----------------------------------PTLTREAHALKLKTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           F    +++F     + S   + D  Q  +L      +          E+  +A  ++++ 
Sbjct: 88  FGLECLRRFSA---LRSDTHVLDARQQHELARRVVDT------YAQREKSSEAVTDLVDY 138

Query: 199 SN 200
            N
Sbjct: 139 VN 140


>gi|323947248|gb|EGB43256.1| UvrD/REP helicase [Escherichia coli H120]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFHQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|170681833|ref|YP_001744207.1| DNA helicase IV [Escherichia coli SMS-3-5]
 gi|170519551|gb|ACB17729.1| helicase IV [Escherichia coli SMS-3-5]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|330910735|gb|EGH39245.1| DNA helicase 4 [Escherichia coli AA86]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|281178086|dbj|BAI54416.1| DNA helicase IV [Escherichia coli SE15]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|215486080|ref|YP_002328511.1| DNA helicase IV [Escherichia coli O127:H6 str. E2348/69]
 gi|312968979|ref|ZP_07783186.1| helicase IV [Escherichia coli 2362-75]
 gi|215264152|emb|CAS08496.1| DNA helicase IV [Escherichia coli O127:H6 str. E2348/69]
 gi|312286381|gb|EFR14294.1| helicase IV [Escherichia coli 2362-75]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|30062501|ref|NP_836672.1| DNA helicase IV [Shigella flexneri 2a str. 2457T]
 gi|56479783|ref|NP_706885.2| DNA helicase IV [Shigella flexneri 2a str. 301]
 gi|30040747|gb|AAP16478.1| DNA helicase IV [Shigella flexneri 2a str. 2457T]
 gi|56383334|gb|AAN42592.2| DNA helicase IV [Shigella flexneri 2a str. 301]
 gi|313650788|gb|EFS15189.1| helicase IV [Shigella flexneri 2a str. 2457T]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|331662375|ref|ZP_08363298.1| helicase IV (75 kDa helicase) [Escherichia coli TA143]
 gi|331060797|gb|EGI32761.1| helicase IV (75 kDa helicase) [Escherichia coli TA143]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|260438613|ref|ZP_05792429.1| putative ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus
           DSM 2876]
 gi|292809205|gb|EFF68410.1| putative ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus
           DSM 2876]
          Length = 648

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +  +  +         +  V A  GSGKT +L  RV  L+   +  PS +L +T TKAAA
Sbjct: 37  LKFSNEQLKAIEFNKGACLVLAGPGSGKTTVLTGRVKYLIDNCHVKPSEILVITFTKAAA 96

Query: 76  AEMSHR 81
            EM +R
Sbjct: 97  TEMKNR 102


>gi|152974753|ref|YP_001374270.1| UvrD/REP helicase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023505|gb|ABS21275.1| UvrD/REP helicase [Bacillus cytotoxicus NVH 391-98]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 84/239 (35%), Gaps = 53/239 (22%)

Query: 1   MIYHNSFQEHSETID----LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++ H++   +   ++     +++ + E + A++        A AGSGKT +L  RV  L+
Sbjct: 31  IMEHDADAAYFRALEQQGVYLNEKQLEAVRATE--GPVLTLAGAGSGKTSVLTTRVGYLV 88

Query: 57  -LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
            +   HP  +L LT T+ AA E+  RV  +       S  +++                 
Sbjct: 89  NVKKVHPRNILLLTFTQKAAEEIRSRVASLPGMNHAASSYVVA----------------- 131

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                              T H+    +++       I     +A+E+  + +I++  K 
Sbjct: 132 ------------------GTFHSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE 168

Query: 176 TLASIMLDNNEELKKAFYEILEISNDED------IETLISDIISNRTALKLIFFFFSYL 228
                  D    L     E  ++   +D      +E    ++      +K  + +  + 
Sbjct: 169 LRLKDAYDAETMLAMISLEKNKLHRPKDVQAKTPVEQEFREVYERYEEVKQKYGYIDFD 227


>gi|320196549|gb|EFW71172.1| DNA helicase IV [Escherichia coli WV_060327]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|161506463|ref|YP_001573575.1| exonuclease V subunit beta [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867810|gb|ABX24433.1| hypothetical protein SARI_04666 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1181

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGTAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ I     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGILFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|119962863|ref|YP_948449.1| ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter aurescens TC1]
 gi|119949722|gb|ABM08633.1| putative ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter
           aurescens TC1]
          Length = 721

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
            + ++ +AS  T    V A AG+GKT  +  R+   + +    P  LL +T T  AAAEM
Sbjct: 32  DEEQREVASTLTGPMCVLAGAGTGKTRAITHRIAYGVHSGVYSPQRLLAVTFTARAAAEM 91

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQT 135
             R+ + +   +  +    +A + ++Q   P     +  +   H    I E    L++ T
Sbjct: 92  RSRLRD-LGVANVQARTFHAAALRQLQFFWPQAIGGTLPNLLDHKANMIAEASRRLRLST 150


>gi|82544714|ref|YP_408661.1| DNA helicase IV [Shigella boydii Sb227]
 gi|81246125|gb|ABB66833.1| DNA helicase IV [Shigella boydii Sb227]
 gi|332093340|gb|EGI98398.1| helicase IV [Shigella boydii 3594-74]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|320175155|gb|EFW50265.1| DNA helicase IV [Shigella dysenteriae CDC 74-1112]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|78776638|ref|YP_392953.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
 gi|78497178|gb|ABB43718.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
          Length = 682

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 39/158 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             S+            + A AGSGKT  +V R+  L+       S  L LT T  AA EM
Sbjct: 9   NNSQTDAVKQTEGPVLILAGAGSGKTTTIVSRLAYLIEGIGIPASNTLTLTFTNKAAKEM 68

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R   +++  ++                                           T H 
Sbjct: 69  RERASNMMSNLAYPPLL--------------------------------------CTFHK 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           F    ++         ++F + D +  K++I++     
Sbjct: 91  FGLLFLKFNIHLLGRQNNFVVIDSDDKKRIIKKINSEL 128


>gi|217327777|ref|ZP_03443860.1| exodeoxyribonuclease V beta chain (ExodeoxyribonucleaseV 135 kDa
           polypeptide) [Escherichia coli O157:H7 str. TW14588]
 gi|217320144|gb|EEC28569.1| exodeoxyribonuclease V beta chain (ExodeoxyribonucleaseV 135 kDa
           polypeptide) [Escherichia coli O157:H7 str. TW14588]
          Length = 316

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYERLLEEID--DKAQAAKWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|215488138|ref|YP_002330569.1| exonuclease V subunit beta [Escherichia coli O127:H6 str. E2348/69]
 gi|215266210|emb|CAS10637.1| exonuclease V (RecBCD complex), beta subunit RecB [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 1180

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + K   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYKHLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLHYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|239908825|ref|YP_002955567.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239798692|dbj|BAH77681.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 624

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 45/217 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +S    +   A   T  A V A  GSGKT  + +R+ RL+      P  +L LT+T+ AA
Sbjct: 1   MSLNAKQLEAAQFHTGIALVVAVPGSGKTKTMTERIGRLVNDHGIAPENILGLTYTRQAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R+  ++   +                                        + + T
Sbjct: 61  EQMRERLELVLHGEA--------------------------------------SRVNLYT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFA----IADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           IH+FC  +++      NI S       +A   +S  + + A    L  I L  +  +   
Sbjct: 83  IHSFCLRLLKSEGRYFNIVSGSEQMNLVATIMRSLGVKDLAIGGVLQDISLAKSNLISP- 141

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
             E +++  ++  +   + +       K I + + + 
Sbjct: 142 -EEFIDLYGEDQSKQKTAMVFKEYEEQKAIRYLYDFD 177


>gi|74311519|ref|YP_309938.1| DNA helicase IV [Shigella sonnei Ss046]
 gi|187731377|ref|YP_001880839.1| DNA helicase IV [Shigella boydii CDC 3083-94]
 gi|73854996|gb|AAZ87703.1| DNA helicase IV [Shigella sonnei Ss046]
 gi|187428369|gb|ACD07643.1| helicase IV [Shigella boydii CDC 3083-94]
 gi|320187172|gb|EFW61873.1| DNA helicase IV [Shigella flexneri CDC 796-83]
 gi|323165442|gb|EFZ51229.1| helicase IV [Shigella sonnei 53G]
 gi|323174930|gb|EFZ60545.1| helicase IV [Escherichia coli LT-68]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|312972962|ref|ZP_07787135.1| exodeoxyribonuclease V beta chain domain protein [Escherichia coli
           1827-70]
 gi|310332904|gb|EFQ00118.1| exodeoxyribonuclease V beta chain domain protein [Escherichia coli
           1827-70]
          Length = 316

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|290511196|ref|ZP_06550565.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. 1_1_55]
 gi|289776189|gb|EFD84188.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. 1_1_55]
          Length = 1178

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 19/211 (9%)

Query: 35  WVSANAGSGKTHILV----QRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +     + +L L   +A+P       LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGESAYPRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S             +D   A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRGESDNPL-YSALLAEIADKDDAAKTLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E   +L  +A              ++    +++ +   D    
Sbjct: 139 LNAFESGMLFEQQLIEDE--SRLRYQACADFWRRHCYPLTRDIAAVIHDVWKGPRD---- 192

Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            L+  +  +R          S     + + +
Sbjct: 193 -LLKSL--DRWLQGEAPQLKSPPAPDETLAE 220


>gi|256544405|ref|ZP_05471780.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
 gi|256399937|gb|EEU13539.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
          Length = 862

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 47/216 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
            + ++L+  D    A V A  G+GKT  +VQ+++ L+      P+ +L  T TK AA E+
Sbjct: 3   NEKQKLIVEDAKYPAAVLAGPGTGKTFTIVQKIISLIKNDGISPNKILVTTFTKKAANEL 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +   +  +D                                    + +   H+
Sbjct: 63  IERVESGLKKENIFADT---------------------------------SNMLIGNFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
              + ++++    N      + D      LIE+               E    F + +  
Sbjct: 90  LALSFLKEYKSFTNKIFDPLVIDSHIEGYLIEKNMDIF----------ENISNFSKFISY 139

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +    I+ + ++I +N   L  +    +    R I+
Sbjct: 140 NEVGQIQGIFANITNN---LLCLDELRNSSNPRDIL 172


>gi|291281962|ref|YP_003498780.1| DNA helicase IV [Escherichia coli O55:H7 str. CB9615]
 gi|209774394|gb|ACI85509.1| DNA helicase IV [Escherichia coli]
 gi|290761835|gb|ADD55796.1| DNA helicase IV [Escherichia coli O55:H7 str. CB9615]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|207111045|ref|ZP_03245207.1| helicase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 56

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 33/54 (61%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
            + A+AGSGKT  L  R L LL   A+PS +L LT TK A AEM  R+L+ + 
Sbjct: 1  MALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLK 54


>gi|157155618|ref|YP_001462195.1| DNA helicase IV [Escherichia coli E24377A]
 gi|193066692|ref|ZP_03047722.1| helicase IV [Escherichia coli E22]
 gi|194430210|ref|ZP_03062709.1| helicase IV [Escherichia coli B171]
 gi|260843211|ref|YP_003220989.1| DNA helicase IV [Escherichia coli O103:H2 str. 12009]
 gi|293433259|ref|ZP_06661687.1| DNA helicase IV [Escherichia coli B088]
 gi|157077648|gb|ABV17356.1| helicase IV [Escherichia coli E24377A]
 gi|192925661|gb|EDV80325.1| helicase IV [Escherichia coli E22]
 gi|194411746|gb|EDX28069.1| helicase IV [Escherichia coli B171]
 gi|257758358|dbj|BAI29855.1| DNA helicase IV [Escherichia coli O103:H2 str. 12009]
 gi|291324078|gb|EFE63500.1| DNA helicase IV [Escherichia coli B088]
 gi|320200191|gb|EFW74779.1| DNA helicase IV [Escherichia coli EC4100B]
 gi|323159593|gb|EFZ45573.1| helicase IV [Escherichia coli E128010]
 gi|323185327|gb|EFZ70691.1| helicase IV [Escherichia coli 1357]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|229490963|ref|ZP_04384796.1| ATP-dependent DNA helicase [Rhodococcus erythropolis SK121]
 gi|229322079|gb|EEN87867.1| ATP-dependent DNA helicase [Rhodococcus erythropolis SK121]
          Length = 712

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             +      P     V A AG+GKT  + +R+  L+         +L +T T  AA EM
Sbjct: 12 DPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVADGHVSAGQVLAVTFTARAAGEM 71

Query: 79 SHRVLEI 85
            R+ E+
Sbjct: 72 RGRLREL 78


>gi|331682467|ref|ZP_08383086.1| helicase IV (75 kDa helicase) [Escherichia coli H299]
 gi|331080098|gb|EGI51277.1| helicase IV (75 kDa helicase) [Escherichia coli H299]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|74316184|ref|YP_313924.1| ATP-dependent DNA helicase Rep [Thiobacillus denitrificans ATCC
           25259]
 gi|74055679|gb|AAZ96119.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 660

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 45/181 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L +    ++  A        V A AGSGKT ++  ++  L+      P ++  +T T   
Sbjct: 4   LAALNPPQREAAKYLDGPLLVLAGAGSGKTRVITHKIAYLIGECGYKPGSIAAITFTNK- 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
                          +       +A++T     K                     GL V 
Sbjct: 63  ---------------AAREMAERAAKLTHGVNTK---------------------GLIVT 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+    ++++    A +   F+I D   +  ++ E  K+T       + +E+++A   
Sbjct: 87  TFHSMGLRMLREDAKFAELKPAFSILDSADAAGIVSEIIKTT-------DKQEIRRAVSR 139

Query: 195 I 195
           I
Sbjct: 140 I 140


>gi|284047260|ref|YP_003397600.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283951481|gb|ADB54225.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 1052

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 42/192 (21%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +D +S   +++   +       +   AGSGKT  LV R+  L+     P +LL L  ++
Sbjct: 1   MLDGLS--SAQRAAVTHRGGPLLIVGGAGSGKTRTLVARLAWLVEQGEAPESLLALALSE 58

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA  +                                       RH+  T+      L 
Sbjct: 59  RAADALR--------------------------------------RHVEDTVEGPYEELA 80

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL--ASIMLDNNEELKK 190
           V T+H FC  ++++  LE  I              ++ E              N   L  
Sbjct: 81  VMTVHGFCARLLREEALEGGIDPFAVAVGRADRLAMLLERIDELTIRRHDFRGNPAALVA 140

Query: 191 AFYEILEISNDE 202
           +F   ++   DE
Sbjct: 141 SFVRRIDRLKDE 152


>gi|256018779|ref|ZP_05432644.1| DNA helicase IV [Shigella sp. D9]
 gi|300824148|ref|ZP_07104267.1| UvrD/REP helicase [Escherichia coli MS 119-7]
 gi|331667345|ref|ZP_08368210.1| helicase IV (75 kDa helicase) [Escherichia coli TA271]
 gi|300523324|gb|EFK44393.1| UvrD/REP helicase [Escherichia coli MS 119-7]
 gi|331065701|gb|EGI37594.1| helicase IV (75 kDa helicase) [Escherichia coli TA271]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|237786044|ref|YP_002906749.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758956|gb|ACR18206.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 705

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           + L      +   A+ P     + A AG+GKT  +  R+  L+      P  +  +T T 
Sbjct: 17  LSLEELDSDQYEAATAPRGPLAIVAGAGTGKTRTITHRIAYLINQGFVTPQQVHAVTFTT 76

Query: 73  AAAAEMSHRVL------EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            AA EM  R+            +   + + LS    +I G  P +    K R +   +  
Sbjct: 77  KAAEEMRERLRIMGAGAVQARTFHAAARKQLSYFWPRIAGDLPWRILDDKFRMVSRALRH 136

Query: 127 TPGGLKVQTI 136
           T      +TI
Sbjct: 137 TGIKAGKETI 146


>gi|191166604|ref|ZP_03028433.1| helicase IV [Escherichia coli B7A]
 gi|260854254|ref|YP_003228145.1| DNA helicase IV [Escherichia coli O26:H11 str. 11368]
 gi|260867133|ref|YP_003233535.1| DNA helicase IV [Escherichia coli O111:H- str. 11128]
 gi|190903409|gb|EDV63129.1| helicase IV [Escherichia coli B7A]
 gi|257752903|dbj|BAI24405.1| DNA helicase IV [Escherichia coli O26:H11 str. 11368]
 gi|257763489|dbj|BAI34984.1| DNA helicase IV [Escherichia coli O111:H- str. 11128]
 gi|323175411|gb|EFZ61006.1| helicase IV [Escherichia coli 1180]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|16128929|ref|NP_415482.1| DNA helicase IV [Escherichia coli str. K-12 substr. MG1655]
 gi|89107812|ref|AP_001592.1| DNA helicase IV [Escherichia coli str. K-12 substr. W3110]
 gi|157160483|ref|YP_001457801.1| DNA helicase IV [Escherichia coli HS]
 gi|170080620|ref|YP_001729940.1| DNA helicase IV [Escherichia coli str. K-12 substr. DH10B]
 gi|188495557|ref|ZP_03002827.1| helicase IV [Escherichia coli 53638]
 gi|194440051|ref|ZP_03072107.1| helicase IV [Escherichia coli 101-1]
 gi|238900220|ref|YP_002926016.1| DNA helicase IV [Escherichia coli BW2952]
 gi|253774008|ref|YP_003036839.1| DNA helicase IV [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161076|ref|YP_003044184.1| DNA helicase IV [Escherichia coli B str. REL606]
 gi|256023336|ref|ZP_05437201.1| DNA helicase IV [Escherichia sp. 4_1_40B]
 gi|293414242|ref|ZP_06656891.1| helicase IV [Escherichia coli B185]
 gi|301022514|ref|ZP_07186389.1| UvrD/REP helicase [Escherichia coli MS 196-1]
 gi|307137592|ref|ZP_07496948.1| DNA helicase IV [Escherichia coli H736]
 gi|2506500|sp|P15038|HELD_ECOLI RecName: Full=Helicase IV; AltName: Full=75 kDa helicase
 gi|1651471|dbj|BAA35727.1| DNA helicase IV [Escherichia coli str. K12 substr. W3110]
 gi|1787196|gb|AAC74048.1| DNA helicase IV [Escherichia coli str. K-12 substr. MG1655]
 gi|157066163|gb|ABV05418.1| helicase IV [Escherichia coli HS]
 gi|169888455|gb|ACB02162.1| DNA helicase IV [Escherichia coli str. K-12 substr. DH10B]
 gi|188490756|gb|EDU65859.1| helicase IV [Escherichia coli 53638]
 gi|194421015|gb|EDX37046.1| helicase IV [Escherichia coli 101-1]
 gi|238860821|gb|ACR62819.1| DNA helicase IV [Escherichia coli BW2952]
 gi|242376777|emb|CAQ31490.1| DNA helicase IV [Escherichia coli BL21(DE3)]
 gi|253325052|gb|ACT29654.1| UvrD/REP helicase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972977|gb|ACT38648.1| DNA helicase IV [Escherichia coli B str. REL606]
 gi|253977191|gb|ACT42861.1| DNA helicase IV [Escherichia coli BL21(DE3)]
 gi|260449892|gb|ACX40314.1| UvrD/REP helicase [Escherichia coli DH1]
 gi|291434300|gb|EFF07273.1| helicase IV [Escherichia coli B185]
 gi|299881211|gb|EFI89422.1| UvrD/REP helicase [Escherichia coli MS 196-1]
 gi|309701241|emb|CBJ00541.1| helicase IV [Escherichia coli ETEC H10407]
 gi|315135611|dbj|BAJ42770.1| DNA helicase IV [Escherichia coli DH1]
 gi|315619158|gb|EFU99738.1| helicase IV [Escherichia coli 3431]
 gi|323938067|gb|EGB34329.1| UvrD/REP helicase [Escherichia coli E1520]
 gi|323942877|gb|EGB39042.1| UvrD/REP helicase [Escherichia coli E482]
 gi|323962848|gb|EGB58423.1| UvrD/REP helicase [Escherichia coli H489]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|307311651|ref|ZP_07591291.1| UvrD/REP helicase [Escherichia coli W]
 gi|306908206|gb|EFN38705.1| UvrD/REP helicase [Escherichia coli W]
 gi|315060247|gb|ADT74574.1| DNA helicase IV [Escherichia coli W]
 gi|323379193|gb|ADX51461.1| UvrD/REP helicase [Escherichia coli KO11]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|289755316|ref|ZP_06514694.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          EAS054]
 gi|289695903|gb|EFD63332.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          EAS054]
          Length = 407

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          LI+    +Q  A   P     V A AG+GKT  +  R+  L+ +       +L +T T+ 
Sbjct: 11 LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 70

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+  +
Sbjct: 71 AAGEMRSRLRAL 82


>gi|237730918|ref|ZP_04561399.1| DNA helicase IV [Citrobacter sp. 30_2]
 gi|226906457|gb|EEH92375.1| DNA helicase IV [Citrobacter sp. 30_2]
          Length = 691

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + E  + I+      ++     +  +S  + A AGSGKT +LV R   LL    A P
Sbjct: 189 LEEYAEFFQHIESSPLNPAQARAVVNGEQSLLILAGAGSGKTSVLVARAGWLLARGEAAP 248

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L L   + AA EM  R+ E +      +    S  +  I         +SK    L 
Sbjct: 249 EQILLLAFGRKAAQEMDDRIRERLHTDEVAARTFHSLALHIISQGSKKVPTVSK----LE 304

Query: 123 TILETPGGLKVQT 135
                   L + T
Sbjct: 305 NDAIARNKLFITT 317


>gi|226305711|ref|YP_002765671.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus erythropolis PR4]
 gi|226184828|dbj|BAH32932.1| probable ATP-dependent DNA helicase UvrD2 [Rhodococcus
          erythropolis PR4]
          Length = 718

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             +      P     V A AG+GKT  + +R+  L+         +L +T T  AA EM
Sbjct: 18 DPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVADGHVSAGQVLAVTFTARAAGEM 77

Query: 79 SHRVLEI 85
            R+ E+
Sbjct: 78 RGRLREL 84


>gi|218704386|ref|YP_002411905.1| DNA helicase IV [Escherichia coli UMN026]
 gi|293404262|ref|ZP_06648256.1| helicase IV [Escherichia coli FVEC1412]
 gi|298380046|ref|ZP_06989651.1| helicase IV [Escherichia coli FVEC1302]
 gi|218431483|emb|CAR12361.1| DNA helicase IV [Escherichia coli UMN026]
 gi|291428848|gb|EFF01873.1| helicase IV [Escherichia coli FVEC1412]
 gi|298279744|gb|EFI21252.1| helicase IV [Escherichia coli FVEC1302]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|15800821|ref|NP_286837.1| DNA helicase IV [Escherichia coli O157:H7 EDL933]
 gi|15830300|ref|NP_309073.1| DNA helicase IV [Escherichia coli O157:H7 str. Sakai]
 gi|168751278|ref|ZP_02776300.1| helicase IV [Escherichia coli O157:H7 str. EC4113]
 gi|168758918|ref|ZP_02783925.1| helicase IV [Escherichia coli O157:H7 str. EC4401]
 gi|168765223|ref|ZP_02790230.1| helicase IV [Escherichia coli O157:H7 str. EC4501]
 gi|168777449|ref|ZP_02802456.1| helicase IV [Escherichia coli O157:H7 str. EC4196]
 gi|168780909|ref|ZP_02805916.1| helicase IV [Escherichia coli O157:H7 str. EC4076]
 gi|168787395|ref|ZP_02812402.1| helicase IV [Escherichia coli O157:H7 str. EC869]
 gi|168801336|ref|ZP_02826343.1| helicase IV [Escherichia coli O157:H7 str. EC508]
 gi|195935149|ref|ZP_03080531.1| DNA helicase IV [Escherichia coli O157:H7 str. EC4024]
 gi|208805656|ref|ZP_03247993.1| helicase IV [Escherichia coli O157:H7 str. EC4206]
 gi|208815646|ref|ZP_03256825.1| helicase IV [Escherichia coli O157:H7 str. EC4045]
 gi|209400242|ref|YP_002269630.1| helicase IV [Escherichia coli O157:H7 str. EC4115]
 gi|217324124|ref|ZP_03440208.1| helicase IV [Escherichia coli O157:H7 str. TW14588]
 gi|254792162|ref|YP_003076999.1| DNA helicase IV [Escherichia coli O157:H7 str. TW14359]
 gi|261227465|ref|ZP_05941746.1| DNA helicase IV [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256112|ref|ZP_05948645.1| DNA helicase IV [Escherichia coli O157:H7 str. FRIK966]
 gi|12514147|gb|AAG55448.1|AE005286_7 DNA helicase IV [Escherichia coli O157:H7 str. EDL933]
 gi|13360506|dbj|BAB34469.1| DNA helicase IV [Escherichia coli O157:H7 str. Sakai]
 gi|187767340|gb|EDU31184.1| helicase IV [Escherichia coli O157:H7 str. EC4196]
 gi|188014697|gb|EDU52819.1| helicase IV [Escherichia coli O157:H7 str. EC4113]
 gi|189001300|gb|EDU70286.1| helicase IV [Escherichia coli O157:H7 str. EC4076]
 gi|189354358|gb|EDU72777.1| helicase IV [Escherichia coli O157:H7 str. EC4401]
 gi|189364952|gb|EDU83368.1| helicase IV [Escherichia coli O157:H7 str. EC4501]
 gi|189372675|gb|EDU91091.1| helicase IV [Escherichia coli O157:H7 str. EC869]
 gi|189376521|gb|EDU94937.1| helicase IV [Escherichia coli O157:H7 str. EC508]
 gi|208725457|gb|EDZ75058.1| helicase IV [Escherichia coli O157:H7 str. EC4206]
 gi|208732294|gb|EDZ80982.1| helicase IV [Escherichia coli O157:H7 str. EC4045]
 gi|209161642|gb|ACI39075.1| helicase IV [Escherichia coli O157:H7 str. EC4115]
 gi|209774388|gb|ACI85506.1| DNA helicase IV [Escherichia coli]
 gi|209774390|gb|ACI85507.1| DNA helicase IV [Escherichia coli]
 gi|209774392|gb|ACI85508.1| DNA helicase IV [Escherichia coli]
 gi|209774396|gb|ACI85510.1| DNA helicase IV [Escherichia coli]
 gi|217320345|gb|EEC28769.1| helicase IV [Escherichia coli O157:H7 str. TW14588]
 gi|254591562|gb|ACT70923.1| DNA helicase IV [Escherichia coli O157:H7 str. TW14359]
 gi|320188698|gb|EFW63358.1| DNA helicase IV [Escherichia coli O157:H7 str. EC1212]
 gi|320637830|gb|EFX07622.1| DNA helicase IV [Escherichia coli O157:H7 str. G5101]
 gi|320642955|gb|EFX12156.1| DNA helicase IV [Escherichia coli O157:H- str. 493-89]
 gi|320648412|gb|EFX17067.1| DNA helicase IV [Escherichia coli O157:H- str. H 2687]
 gi|320653728|gb|EFX21802.1| DNA helicase IV [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320659571|gb|EFX27134.1| DNA helicase IV [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664342|gb|EFX31493.1| DNA helicase IV [Escherichia coli O157:H7 str. LSU-61]
 gi|326338892|gb|EGD62708.1| DNA helicase IV [Escherichia coli O157:H7 str. 1125]
 gi|326341711|gb|EGD65499.1| DNA helicase IV [Escherichia coli O157:H7 str. 1044]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|193070024|ref|ZP_03050971.1| helicase IV [Escherichia coli E110019]
 gi|209918215|ref|YP_002292299.1| DNA helicase IV [Escherichia coli SE11]
 gi|218553549|ref|YP_002386462.1| DNA helicase IV [Escherichia coli IAI1]
 gi|218694437|ref|YP_002402104.1| DNA helicase IV [Escherichia coli 55989]
 gi|192956621|gb|EDV87077.1| helicase IV [Escherichia coli E110019]
 gi|209911474|dbj|BAG76548.1| DNA helicase IV [Escherichia coli SE11]
 gi|218351169|emb|CAU96873.1| DNA helicase IV [Escherichia coli 55989]
 gi|218360317|emb|CAQ97867.1| DNA helicase IV [Escherichia coli IAI1]
 gi|324117174|gb|EGC11082.1| UvrD/REP helicase [Escherichia coli E1167]
          Length = 684

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|228990313|ref|ZP_04150279.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus pseudomycoides DSM
           12442]
 gi|228769389|gb|EEM17986.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus pseudomycoides DSM
           12442]
          Length = 687

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 73/219 (33%), Gaps = 52/219 (23%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ + N HP  +L LT T+ AA E
Sbjct: 51  LNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLINVKNVHPRNILLLTFTQKAAEE 110

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV  +       S  +++                                    T H
Sbjct: 111 IRSRVANLPGMNHAASRYVVA-----------------------------------GTFH 135

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +    +++       I     +A+E+  + +I++  K     +  D + E   A   + +
Sbjct: 136 SVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKEL--RLKDDYDAETMLAMISLEK 188

Query: 198 ISNDE--------DIETLISDIISNRTALKLIFFFFSYL 228
              +          +E    ++      +K  + +  + 
Sbjct: 189 NKLNRPKNVQAKTPVEQEFREVYERYEDVKQRYGYIDFD 227


>gi|261404451|ref|YP_003240692.1| UvrD/REP helicase [Paenibacillus sp. Y412MC10]
 gi|261280914|gb|ACX62885.1| UvrD/REP helicase [Paenibacillus sp. Y412MC10]
          Length = 822

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 45/178 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            +   +++              A AGSGKT +LV R   L+ A    PS++L +T +  A
Sbjct: 50  GLLLNRAQIQAVRHTQGPLLTLAGAGSGKTSVLVSRTGYLIAAKSVEPSSILLVTFSSKA 109

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R++                    + G + +++    AR                
Sbjct: 110 AAEMKERIM-------------------ALPGLRSSETAKVTAR---------------- 134

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           T H+F   +++    +  I S+          +  +   K  L  + L ++ E +   
Sbjct: 135 TFHSFFLYLLRTRGYKQEILSN---------ARHQQFIMKRILREMGLQDSYEAETLL 183


>gi|323973162|gb|EGB68354.1| UvrD/REP helicase [Escherichia coli TA007]
          Length = 673

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|170020637|ref|YP_001725591.1| DNA helicase IV [Escherichia coli ATCC 8739]
 gi|169755565|gb|ACA78264.1| UvrD/REP helicase [Escherichia coli ATCC 8739]
          Length = 684

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|146328|gb|AAA23952.1| helicase IV [Escherichia coli]
          Length = 684

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|312971094|ref|ZP_07785273.1| helicase IV [Escherichia coli 1827-70]
 gi|310336855|gb|EFQ02022.1| helicase IV [Escherichia coli 1827-70]
          Length = 684

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|311278235|ref|YP_003940466.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae SCF1]
 gi|308747430|gb|ADO47182.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae SCF1]
          Length = 1179

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT+ +    LRLLL            +   LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTYTIAALYLRLLLGLGGDAAFPRPVNVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I     + L D   +     +  + P+K    +A   L+          V TIH FC+ +
Sbjct: 80  IHELRIACLRDSTDNPLYASLLAEIPDK---QQAAQTLLLAERLMDEAAVFTIHGFCQRM 136

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +     E+ +     + ++E   +L  +A               L +   +I+     + 
Sbjct: 137 LSLNAFESGMLFEQQLIEDE--SRLRFQACADFWRRHCY----PLPRDIAQIIHAR-WKG 189

Query: 204 IETLISDI 211
            + L+SDI
Sbjct: 190 PQALLSDI 197


>gi|161486258|ref|NP_753024.2| DNA helicase IV [Escherichia coli CFT073]
          Length = 684

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P  +
Sbjct: 185 YADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASPEQI 244

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
           L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 245 LLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|148242655|ref|YP_001227812.1| exodeoxyribonuclease V beta chain [Synechococcus sp. RCC307]
 gi|147850965|emb|CAK28459.1| Exodeoxyribonuclease V beta chain [Synechococcus sp. RCC307]
          Length = 1189

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 30/206 (14%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT---------------KAA 74
             +  + A+AG+GKT+ L  RVLR +         +L +T T               + A
Sbjct: 13  GGTVVLEASAGTGKTYALSHRVLREVGENGRAIDQILVVTFTRAAAAEIRRRIRTRLEEA 72

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           +  +++R+          SD  L   I++          +      L+  ++      + 
Sbjct: 73  STVLAYRLAN---DNRLASDPTLDELISRWAASPQGVEVLLN----LLQAIDRIDLAPIT 125

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH F + ++Q       +     +   E  + L++E       S++       +     
Sbjct: 126 TIHGFIQRLIQDNGTLLGLDPQRRL--REGGRSLLQELVNDWRRSVLSPAPAPWQAWVQS 183

Query: 195 ILEISNDE--DIETLISDIISNRTAL 218
             ++S D    +  L+ D   +R  L
Sbjct: 184 HSDLSLDGLMKLAQLVDD---DRDML 206


>gi|229004068|ref|ZP_04161870.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock1-4]
 gi|228757166|gb|EEM06409.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock1-4]
          Length = 687

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 73/219 (33%), Gaps = 52/219 (23%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ + N HP  +L LT T+ AA E
Sbjct: 51  LNEKQLEAVQTTEGPVLTLAGAGSGKTSVLTTRVGYLINVKNVHPRNILLLTFTQKAAEE 110

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV  +       S  +++                                    T H
Sbjct: 111 IRSRVANLPGMNHAASRYVVA-----------------------------------GTFH 135

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +    +++       I     +A+E+  + +I++  K     +  D + E   A   + +
Sbjct: 136 SVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKEL--RLKDDYDAETMLAMISLEK 188

Query: 198 ISNDE--------DIETLISDIISNRTALKLIFFFFSYL 228
              +          +E    ++      +K  + +  + 
Sbjct: 189 NKLNRPKDVQAKTPVEQEFREVYERYEDVKQRYGYIDFD 227


>gi|218688798|ref|YP_002397010.1| DNA helicase IV [Escherichia coli ED1a]
 gi|218426362|emb|CAR07187.1| DNA helicase IV [Escherichia coli ED1a]
          Length = 684

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P  +
Sbjct: 185 YADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASPEQI 244

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
           L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 245 LLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|254821701|ref|ZP_05226702.1| hypothetical protein MintA_17327 [Mycobacterium intracellulare
          ATCC 13950]
          Length = 699

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++     P     V A AG+GKT  +  R+ +L+         +L +T T+ AA EM
Sbjct: 13 DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAAGQVLAVTFTQRAAGEM 72

Query: 79 SHRVLEIITAWSHLS 93
            R+  I  A     
Sbjct: 73 RSRLRAIDAAAGTGP 87


>gi|315615206|gb|EFU95843.1| exodeoxyribonuclease V beta chain domain protein [Escherichia coli
           3431]
          Length = 316

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFE-----TWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|299771761|ref|YP_003733787.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
           sp. DR1]
 gi|298701849|gb|ADI92414.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
           sp. DR1]
          Length = 1232

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       +
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPRQVIATTFTRAAAAELKSRIRARLVETYRYLE 81

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    ++  +   + D+             + A   L  +++    L V T+ +F +
Sbjct: 82  TKRSFTEHELITQAEQEPDLLLQHILKSFATRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +    + +  A Y   E+ N 
Sbjct: 142 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQPQNVIDALYLAGELKNV 199

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 200 DSFVKLVEDSLN 211


>gi|189911536|ref|YP_001963091.1| DNA/RNA helicase UvrD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776212|gb|ABZ94513.1| DNA/RNA helicase UvrD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
          Length = 671

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 38/160 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           +    ++    S       V A AGSGKT ++  R+  ++     P S ++ L+ T  +A
Sbjct: 1   MKLNAAQMEAVSTIQGPLLVFAGAGSGKTRVITNRIAHMVEGVKIPASKIVALSFTNKSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM+ R+ +++                                       E   G+ + T
Sbjct: 61  KEMAERLRKMVPR-------------------------------------EKLKGITLST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            H+    I+++   +      F + +    +  + +  KS
Sbjct: 84  FHSLGLKILKEHIGKLGYNETFLLFNGTDQEAFVSDLLKS 123


>gi|300937687|ref|ZP_07152490.1| UvrD/REP helicase [Escherichia coli MS 21-1]
 gi|300457288|gb|EFK20781.1| UvrD/REP helicase [Escherichia coli MS 21-1]
          Length = 715

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-P 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL      P
Sbjct: 213 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEAFP 272

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 273 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 315


>gi|205353934|ref|YP_002227735.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273715|emb|CAR38708.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326629048|gb|EGE35391.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 1181

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSTAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I     +     S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHEL-RIDCLRESTDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|325124330|gb|ADY83853.1| exonuclease V, beta chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 1226

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 81/192 (42%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       +
Sbjct: 16  LIEASAGTGKTYTLSSLMVRIFLEKYLPRQVIATTFTRAAAAELKSRIRARLVETYRYLE 75

Query: 95  EILSAEITKIQGKKPNKSDM-------------SKARHLLITILETPGGLKVQTIHAFCE 141
              S    ++  +   +SD+             + A   L  +++    L V T+ +F +
Sbjct: 76  TKRSFTEQELLTQAEQESDLLLQHILKHFATRIAYACERLKLVIDQLDELFVGTLDSFSQ 135

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L   +   ++ +  A Y   E+ + 
Sbjct: 136 KLLREFAFESGKIERAQITD--DAKTYSRQLIHDVLREWIQSQSQTVIDALYLAGELKSV 193

Query: 202 EDIETLISDIIS 213
           +    L+ D ++
Sbjct: 194 DSFVKLVEDSLN 205


>gi|212709835|ref|ZP_03317963.1| hypothetical protein PROVALCAL_00883 [Providencia alcalifaciens DSM
           30120]
 gi|212687646|gb|EEB47174.1| hypothetical protein PROVALCAL_00883 [Providencia alcalifaciens DSM
           30120]
          Length = 692

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           YH+ FQ     I+      S+ L   +   +  V A AGSGKT +LV R   LLL   A 
Sbjct: 193 YHDFFQN----IESSPLNYSQSLSVINGEDNVLVLAGAGSGKTSVLVARAGWLLLRELAK 248

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ---GKKPNKSDMSKAR 118
           P  +L L   + AAAEM+ R+   +      +    +  +  I+    K P  S++    
Sbjct: 249 PEQILLLAFGRKAAAEMNERIQSRLQQQEIEAKTFHALALQIIREGSNKSPVISELESNA 308

Query: 119 HLLITILETPGGLKVQ 134
               ++L T    +  
Sbjct: 309 EKRQSLLLTEWREQCS 324


>gi|323967209|gb|EGB62633.1| UvrD/REP helicase [Escherichia coli M863]
 gi|327253754|gb|EGE65383.1| helicase IV [Escherichia coli STEC_7v]
          Length = 684

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGDAAP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM  R+ E +      +    +  +  IQ        +SK
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQQGSKKVPTVSK 295


>gi|205356745|ref|ZP_03223505.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345384|gb|EDZ32027.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 676

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 44/219 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + L      + L A+       V A+AG+GKT  +V R+  LL     P  ++ LT T  
Sbjct: 1   MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A+ EM  R+ +                                 +++   IL        
Sbjct: 61  ASKEMIGRLGKFFD------------------------------KNITSKILA------- 83

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    +++          + A+    + K L++   +  +   + D         Y
Sbjct: 84  GTFHSTAYTLLRNA------DKNIALKQASELKTLLKSVYEKRIFRHLSDIKPYQSSYLY 137

Query: 194 EILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
           ++     N    +   +    N     +    +  + + 
Sbjct: 138 DLYSLFQNKAHNQDFYTWFCQNYEDQSIYAEIYEDILKE 176


>gi|296169034|ref|ZP_06850696.1| excision endonuclease subunit UvrD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896293|gb|EFG75952.1| excision endonuclease subunit UvrD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 728

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++     P     V A AG+GKT  +  R+ +L+ +       +L +T T+ AA EM
Sbjct: 42  DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVASGHVAAGQVLAVTFTQRAAGEM 101

Query: 79  SHRVL 83
             R+ 
Sbjct: 102 RSRLR 106


>gi|323157143|gb|EFZ43266.1| helicase IV domain protein [Escherichia coli EPECa14]
          Length = 291

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 242 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 284


>gi|298253432|ref|ZP_06977224.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
 gi|297532827|gb|EFH71713.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
          Length = 515

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 9/131 (6%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
            +D +  ++ E   A +      + A AG+GKT  + +R+          P  +L +T +
Sbjct: 23  LLDGLDNSQREAATALE--GPVRIIACAGAGKTRTITRRIAYACATGKWDPERVLAVTFS 80

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITIL 125
             AAAEM  R+  +  +         SA +  I+    +       S M+ ++ ++ + L
Sbjct: 81  VKAAAEMRSRIEALGVSNVGCVSTFHSAALQHIRSVWNDVCSAQFPSIMNDSQQIIASAL 140

Query: 126 ETPGGLKVQTI 136
           +        T+
Sbjct: 141 KRYPDFADMTL 151


>gi|291535991|emb|CBL09103.1| Superfamily I DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 613

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 1/104 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +S   S+            V A  GSGKT ++ +R   L+ A    P+ +L +T TKAAA
Sbjct: 1   MSFNASQTRAIHHKNGPMLVLAGPGSGKTLVITERTKYLIEACGIDPAQILVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            EM  R    +     ++     A    I     N S  + AR 
Sbjct: 61  TEMKRRFQRKMNRSCPVTFGTFHAVYFAILKHAYNYSADNIARE 104


>gi|94496824|ref|ZP_01303399.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94423837|gb|EAT08863.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 1057

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 31/144 (21%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           A V A AG+GKTH +   +   +      P  +L +T T+AAA+E+  R+   + A  ++
Sbjct: 7   AIVPAGAGAGKTHHIKTTLGGWVKNGVVAPRRILAVTFTEAAASELRQRIRAELLAEGNI 66

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
              +   +                                V TIHA  + ++ +  L   
Sbjct: 67  EAALEVEQ------------------------------AYVTTIHALGQRLLGEHALAHG 96

Query: 153 ITSHFAIADEEQSKKLIEEAKKST 176
            +    + +E +   L+  + ++ 
Sbjct: 97  ASPRLRLIEEGEQDLLLRRSIEAV 120


>gi|282866614|ref|ZP_06275656.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558516|gb|EFB64076.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 799

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 3   YHNSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +   F +  E+ D +       ++ +A        V A AG+GKT  +  R+   + +  
Sbjct: 63  HSTLFPQVPESADAVLDGLDPEQREVALALGGPVCVLAGAGTGKTRAITHRIAYGVRSGI 122

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             P+T+L +T T  AA E+  R+ + + A    +    SA + ++Q   P  
Sbjct: 123 LQPATVLAVTFTNRAAGELRGRLRQ-LGATGVQARTFHSAALRQLQYFWPKA 173


>gi|322496954|emb|CBZ32024.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 996

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 44/182 (24%)

Query: 20  TKSEQLLASDPTRSAWVS-ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            +S+   A+ P  +A +  A AGSGKT  +  R+  LL +     ++L +  T+ AA  +
Sbjct: 2   DESQIRAATYPAGAALILQAGAGSGKTQTMAARIAYLLQSGVPGHSILGICFTRQAAETL 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +                                    T+      LK++T HA
Sbjct: 62  RERVRSTLP----------------------------------PTLTREAHALKLKTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           F    +++F     + S   + D  Q  +L      +          E+  +A  ++++ 
Sbjct: 88  FGLECLRRFGA---LQSDTHVLDARQQYELARRVVDT------YAQREKSSEAVTDLVDY 138

Query: 199 SN 200
            N
Sbjct: 139 VN 140


>gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 41/160 (25%)

Query: 14  IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
           ++L +Q    Q  + ++   +  + A AG+GKT IL  R+  +L    A    +LCLT T
Sbjct: 1   MNLSTQLNETQHRIVTELDHNILLQAPAGTGKTAILAHRIAYILACRRAREKEILCLTFT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A  E+ HR+ E+I   +                                        +
Sbjct: 61  NRACKELQHRLQELIGLSAQ--------------------------------------NV 82

Query: 132 KVQTIHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIE 170
            ++TIHAF   ++Q+   + A +     I DEE  + L+ 
Sbjct: 83  TIKTIHAFGYLVLQEEGKKNAAVPYDSLIYDEEDCRHLLA 122


>gi|158312779|ref|YP_001505287.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108184|gb|ABW10381.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1135

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 39/153 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++  +         V A  G+GKT  LV+ V R + A A P++LL LT ++ AA  +  R
Sbjct: 5   AQTDVVGHAGGPLLVLAGPGTGKTTTLVEAVARRIEAGADPASLLVLTFSRRAARHLRER 64

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
               + A +                                            T HA+C 
Sbjct: 65  FAVRLGAAAVGPAAW--------------------------------------TFHAWCL 86

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
            +++ +     +   F +    +    + +  +
Sbjct: 87  GLLRAYGAATPL-GGFRLLSGPEQDARLRDLIE 118


>gi|157148363|ref|YP_001455682.1| exonuclease V subunit beta [Citrobacter koseri ATCC BAA-895]
 gi|157085568|gb|ABV15246.1| hypothetical protein CKO_04185 [Citrobacter koseri ATCC BAA-895]
          Length = 1181

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRRLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           +      +  +    D  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRETTDNPLYARLLE-EIEDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              E+ +  +E       +   
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIAQVVFEAW-----KGPR 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|218690946|ref|YP_002399158.1| exonuclease V subunit beta [Escherichia coli ED1a]
 gi|218428510|emb|CAR09291.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
           ED1a]
          Length = 1180

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     +     ++ +    +    LL           V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYARLLQEIDDKGQAAQWLLLAE--RQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLTREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|57167773|ref|ZP_00366913.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter coli RM2228]
 gi|305432203|ref|ZP_07401367.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter coli JV20]
 gi|57020895|gb|EAL57559.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter coli RM2228]
 gi|304444746|gb|EFM37395.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
          [Campylobacter coli JV20]
          Length = 676

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 17 ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +S+   EQ L A+       + A+AG+GKT  +V R+  LL     P  ++ LT T  A+
Sbjct: 3  LSRLNEEQYLAATANFGHNLIIASAGTGKTSTIVARISYLLSQGVSPQKIMLLTFTNKAS 62

Query: 76 AEMSHRVLEII 86
           EM  R+ +  
Sbjct: 63 KEMISRLGKYF 73


>gi|320096305|ref|ZP_08027873.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976764|gb|EFW08537.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 436

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 26/178 (14%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           +E +D +     ++ +A+       V A AG+GKT  +  R+       A  PS +L +T
Sbjct: 10  NELLDALD--PDQRAVATQVAGPLAVLAGAGTGKTRAITYRIAYGAAVGAFDPSNVLAVT 67

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            TK AA EM HR+  +               + + Q +  + + + + RH   T++  P 
Sbjct: 68  FTKRAAYEMRHRLAAL--------------GVPRAQARTFHSAALRQLRHFWPTVVGGPM 113

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              V   H    +++        IT      D    + L  E + + ++ +  D  E 
Sbjct: 114 PDVVP--HK--ASLVSSACARLGIT-----VDRTTVRDLAAEVEWAKVSMVGPDRYEA 162


>gi|260171310|ref|ZP_05757722.1| hypothetical protein BacD2_05540 [Bacteroides sp. D2]
 gi|315919621|ref|ZP_07915861.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693496|gb|EFS30331.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1624

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 90/217 (41%), Gaps = 57/217 (26%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
            Q++ +    +S+ + E +++   +R   V+A  GSGKT +LV ++  LLL  +     LL
Sbjct: 1064 QKYKQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1122

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             LT ++AAA E   R++E+I   +H  +                                
Sbjct: 1123 MLTFSRAAATEFKQRLMELIGNAAHFIE-------------------------------- 1150

Query: 127  TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                  ++T H++C  ++              I + E +K ++ +A +      +  N  
Sbjct: 1151 ------IKTFHSYCFDLLG------------RIGNLEDAKSVVAKAAEMICQGEVEPNK- 1191

Query: 187  ELKKAFYEILEISNDEDIET--LISDIISNRTALKLI 221
             + K    +++ + D  +E   L+  +++N   +++I
Sbjct: 1192 -IGKTVL-VIDEAQDMGVEEYALLRALMANNEEMRVI 1226


>gi|317507957|ref|ZP_07965651.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316253745|gb|EFV13121.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 1070

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
          ++ +     ++ ++ +   P  S+ V A AGSGKT  +  RV+ L+      P  +L LT
Sbjct: 8  AQAVGAPLPSEEQERVIGAPLASSVVLAGAGSGKTETIAARVVWLIANGLVEPEQVLGLT 67

Query: 70 HTKAAAAEMSHRVLEIITAWSHLS 93
           T++AA  M  R+   +  ++   
Sbjct: 68 FTRSAARGMLSRIRARLAGFAASP 91


>gi|289167933|ref|YP_003446202.1| hypothetical protein smi_1090 [Streptococcus mitis B6]
 gi|288907500|emb|CBJ22337.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 1297

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 51/190 (26%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A  G+GKT IL +RV  +L   +  P  ++CLT+T+A A+EM  R+ ++I       
Sbjct: 1   MVIAGPGTGKTQILSRRVANILTNYHTSPEEIVCLTYTEAGASEMLDRLEKLIGEEGR-- 58

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                                ++V TIHAFC  ++ +   E   
Sbjct: 59  ------------------------------------KVRVSTIHAFCSELILRNS-EI-F 80

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIM---------LDNNEELKKAFYEILEIS-NDED 203
                I       ++++E     +                 ++L + FY++   + N ED
Sbjct: 81  GGQPKIISTAAKYEILKEIMDKYVIEGNPLYKNSGKRYSAKDQLLELFYKMKRENLNKED 140

Query: 204 IETLISDIIS 213
            E  I +   
Sbjct: 141 FEKEIDEYFK 150


>gi|146078347|ref|XP_001463521.1| ATP-dependent DNA helicase [Leishmania infantum JPCM5]
 gi|134067607|emb|CAM65886.1| putative ATP-dependent DNA helicase [Leishmania infantum JPCM5]
          Length = 996

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 44/182 (24%)

Query: 20  TKSEQLLASDPTRSAWVS-ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            +S+   A+ P  +A +  A AGSGKT  +  R+  LL +     ++L +  T+ AA  +
Sbjct: 2   DESQIRAATYPAGAALILQAGAGSGKTQTMAARIAYLLQSGVPGHSILGICFTRQAAETL 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +                                    T+      LK++T HA
Sbjct: 62  RERVRSTLP----------------------------------PTLTREAHALKLKTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           F    +++F     + S   + D  Q  +L      +          E+  +A  ++++ 
Sbjct: 88  FGLECLRRFGA---LQSDTHVLDARQQYELARRVVDT------YAQREKSSEAVTDLVDY 138

Query: 199 SN 200
            N
Sbjct: 139 VN 140


>gi|15829239|ref|NP_326599.1| ATP-dependent helicase PcrA [Mycoplasma pulmonis UAB CTIP]
 gi|14090183|emb|CAC13941.1| ATP-DEPENDENT HELICASE PCRA [Mycoplasma pulmonis]
          Length = 741

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 40/156 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           L++     Q  A     ++  + A AG+GKT +L +++  L+ +   +P  +L +T T  
Sbjct: 20  LLADLNIAQKQAVLVMPKTLQIVAGAGTGKTKVLTRKMSYLIEVEQVNPFKILAVTFTNK 79

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R                                          I E    L++
Sbjct: 80  AAKEMRER--------------------------------------ASAHINENTKNLQI 101

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
            T +  C  I+++       +  F+I D +    ++
Sbjct: 102 YTFYNLCNLILKEDIHHLGYSKTFSILDVKDIDNIL 137


>gi|206576716|ref|YP_002236758.1| exodeoxyribonuclease V, beta subunit [Klebsiella pneumoniae 342]
 gi|206565774|gb|ACI07550.1| exodeoxyribonuclease V, beta subunit [Klebsiella pneumoniae 342]
          Length = 1178

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 19/211 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGESAYSRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S              D   A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRGESDNPL-YSALLAEIDDKDDAAKTLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E   +L  +A              ++    +++ +   D    
Sbjct: 139 LNAFESGMLFEQQLIEDE--SRLRYQACADFWRRHCYPLTRDIAAVIHDVWKGPRD---- 192

Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            L+  +  +R          S     + + +
Sbjct: 193 -LLKSL--DRWLQGEAPQLKSPPAPDETLAE 220


>gi|154500527|ref|ZP_02038565.1| hypothetical protein BACCAP_04200 [Bacteroides capillosus ATCC
           29799]
 gi|150270758|gb|EDM98054.1| hypothetical protein BACCAP_04200 [Bacteroides capillosus ATCC
           29799]
          Length = 1053

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           Q+H+     +++  +++       R   VSA  G+GKT  L  R+  L+         + 
Sbjct: 446 QKHTAAAAGLNE--AQRAAVETDGRVVAVSAGPGTGKTRTLAYRIAHLIEDCGVKAGNIT 503

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHL 92
            +T T  AA E+  R+  ++     L
Sbjct: 504 AVTFTNRAAEELRQRLEHVLGGKRAL 529


>gi|323172877|gb|EFZ58508.1| exodeoxyribonuclease V beta chain domain protein [Escherichia coli
           LT-68]
          Length = 316

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 10  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 69

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     + +   ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 70  IHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 127

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +A              E+      ++     +  
Sbjct: 128 NLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPREIA-----LVVFETWKGP 180

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 181 QALLRDI 187


>gi|294497510|ref|YP_003561210.1| ATP-dependent DNA helicase [Bacillus megaterium QM B1551]
 gi|294347447|gb|ADE67776.1| ATP-dependent DNA helicase [Bacillus megaterium QM B1551]
          Length = 772

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 41/143 (28%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           Y N F+E    +D            +       + A AGSGKT +L  R   ++      
Sbjct: 139 YLNEFKESGIELDSNQWK-----AVTHSEGPLLILAGAGSGKTRVLTARTAYMIQEKQID 193

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P +++ +T T  +A EM  R+                          P  S +   + L 
Sbjct: 194 PKSIMLVTFTAKSAKEMKERL-----------------------ATYPKMSGLHLRQML- 229

Query: 122 ITILETPGGLKVQTIHAFCEAIM 144
                      V T H+    ++
Sbjct: 230 -----------VGTFHSIFLRMI 241


>gi|282599796|ref|ZP_05971895.2| helicase IV [Providencia rustigianii DSM 4541]
 gi|282567853|gb|EFB73388.1| helicase IV [Providencia rustigianii DSM 4541]
          Length = 692

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           + +  + I+      S+ L   +   +  V A AGSGKT +LV R   LLL   A P  +
Sbjct: 193 YSDFFQHIESSPLNNSQSLSVINGEDNVLVLAGAGSGKTSVLVARAGWLLLRGLAKPEQI 252

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ---GKKPNKSDMSKARHLLI 122
           L L   + AA EM+ R+   +      +    +  +  I+    K P  S++        
Sbjct: 253 LLLAFGRKAAEEMNERIQSRLQQVEIEAKTFHALALHIIREGSNKSPVISELETDSSKRQ 312

Query: 123 TILETPGGLKVQ 134
           ++L T    +  
Sbjct: 313 SLLLTEWREQCS 324


>gi|225573671|ref|ZP_03782426.1| hypothetical protein RUMHYD_01867 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038964|gb|EEG49210.1| hypothetical protein RUMHYD_01867 [Blautia hydrogenotrophica DSM
           10507]
          Length = 608

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 57/207 (27%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75
           + +  S+    +  +    V A  GSGKT ++V+R   ++  +  P T +L +T +KAAA
Sbjct: 1   MKKNPSQLRAIAHLSGPMMVLAGPGSGKTSVIVERTSYMIHHHQVPETGILVVTFSKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R L +                                         +  G+   T
Sbjct: 61  REMKERFLRLENR--------------------------------------SGSGVTFGT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H     I++       + +            L EE KK  L  ++    EEL++    +
Sbjct: 83  FHGVFYGILKCAY---GLDA---------RNILSEEQKKQFLGELVEQYGEELRQEGEFL 130

Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222
            E+  +      IS +  NR  L+  +
Sbjct: 131 EELGRE------ISMVKGNRVELEYYY 151


>gi|304414043|ref|ZP_07395411.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Candidatus
           Regiella insecticola LSR1]
 gi|304283257|gb|EFL91653.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Candidatus
           Regiella insecticola LSR1]
          Length = 1196

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 12/154 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL----ANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL      A+P       +L +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTFTIGVLYLRLLLGLGGDTAYPRRLTVEEILVVTFTEAATEELKGRIRSN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +    Q      +D++ A   L+          + TIH FC+ I+ 
Sbjct: 81  IHRLRIACVRGASDDAMD-QALLNEITDLADAAAQLLAAERQMDEAAIYTIHGFCQRILA 139

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
               E+ I   F          L  +A       
Sbjct: 140 ANAFESGI--LFEQTLIHDELPLRRQACADFWRR 171


>gi|258514808|ref|YP_003191030.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778513|gb|ACV62407.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 808

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 31/141 (21%)

Query: 21  KSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAA 74
            +EQ             +SA AG+GKT +++ R+L L   +  PS     ++ +T T  A
Sbjct: 99  NAEQFSIEHARTDVHLMISAGAGTGKTTVMINRLLYL--KHIDPSLSFAEIVMITFTNEA 156

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A +M  R+ E +  + H++                        +   +  LE    +++ 
Sbjct: 157 AVQMRQRLAEKLINYYHVTG-----------------------QRKYLEWLEDTQKMQIS 193

Query: 135 TIHAFCEAIMQQFPLEANITS 155
           T+HAF + ++     E   + 
Sbjct: 194 TVHAFAKYLLGTVGQELGFSP 214


>gi|254365820|ref|ZP_04981865.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           str. Haarlem]
 gi|134151333|gb|EBA43378.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           str. Haarlem]
          Length = 722

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           LI+    +Q  A   P     V A AG+GKT  +  R+  L+ +       +L +T T+ 
Sbjct: 30  LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 89

Query: 74  AAAEMSHRVLEI 85
           AA EM  R+  +
Sbjct: 90  AAGEMRSRLRAL 101


>gi|291437397|ref|ZP_06576787.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340292|gb|EFE67248.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 1126

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 39/126 (30%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +    T    V A  G+GKT  LV+ V   +     P  +L LT ++ AA E+  R
Sbjct: 9   AQRSVVDHGTGPLLVLAGPGTGKTTTLVESVAARIARGGDPERVLVLTFSRRAAVELRDR 68

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   + A                                           +  T H+FC 
Sbjct: 69  MALRMGAARAP---------------------------------------RATTFHSFCY 89

Query: 142 AIMQQF 147
           A+++  
Sbjct: 90  ALIRAH 95


>gi|257068321|ref|YP_003154576.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM
          4810]
 gi|256559139|gb|ACU84986.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM
          4810]
          Length = 710

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPST 64
          S  E +E++ L +    ++ +A        V A AG+GKT  +  R+   +     +P  
Sbjct: 16 SAPEDAESL-LAALDPEQREVARSFGTPMCVLAGAGTGKTRAITHRIAYGVATGQLNPRH 74

Query: 65 LLCLTHTKAAAAEMSHRVLEI 85
          +L +T T  AAAEM  R+ ++
Sbjct: 75 VLAVTFTAKAAAEMRSRLRDL 95


>gi|260576816|ref|ZP_05844800.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
 gi|259020959|gb|EEW24271.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
          Length = 1415

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 13   TIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
             +D +      +++  D  + +  V A  GSGKT +LV R+  L+ +    P  +L LT+
Sbjct: 1043 IVDALDNPAQAEIVRDDREQTNVLVLAGPGSGKTRVLVHRIAYLIRVKREDPRGILVLTY 1102

Query: 71   TKAAAAEMSHRVLEIITAWS 90
             + AAAE+  R+  +I   +
Sbjct: 1103 NRHAAAEIRERLRLLIGEDA 1122


>gi|302542682|ref|ZP_07295024.1| putative ATP-dependent DNA helicase PcrA [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460300|gb|EFL23393.1| putative ATP-dependent DNA helicase PcrA [Streptomyces
           himastatinicus ATCC 53653]
          Length = 733

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
              ++ +A+    +  V A AG+GKT  +  R+   + A    P+++L +T T  AA EM
Sbjct: 6   DPEQREVATALHGAVCVLAGAGTGKTRAITHRIAYGVRAGILQPASVLAVTFTNRAAGEM 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             R+ + + A    +    SA + ++Q   P  
Sbjct: 66  RGRLRQ-LGAGGVQARTFHSAALRQLQYFWPKA 97


>gi|210623565|ref|ZP_03293891.1| hypothetical protein CLOHIR_01841 [Clostridium hiranonis DSM 13275]
 gi|210153435|gb|EEA84441.1| hypothetical protein CLOHIR_01841 [Clostridium hiranonis DSM 13275]
          Length = 630

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 43/214 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
           ++L S  +++            V A  GSGKT ++  R+  ++L    P   +L ++ TK
Sbjct: 1   MNLDSLNENQLKAVEHIEGPCMVLAGPGSGKTRVITYRIANMVLNKNIPGARILAISFTK 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A++ EM +R++ I                                             + 
Sbjct: 61  ASSMEMKNRLMAISNDI-------------------------------------RLSKVT 83

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
             T H+    +++ +     +    +I D+++ +  I+   K+ L     D+++ + +  
Sbjct: 84  CGTFHSVFFRMLR-YFENLQLK---SIVDDKEKRYAIKNIIKN-LKIENTDDDDTITQIM 138

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFS 226
            EI  I N+    +  +  +  R     ++  + 
Sbjct: 139 TEISYIKNELMNPSDFNSDVLTRDDFTRVYSMYE 172


>gi|198242178|ref|YP_002216966.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207858257|ref|YP_002244908.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197936694|gb|ACH74027.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206710060|emb|CAR34415.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326624733|gb|EGE31078.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 1181

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSTAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|189346869|ref|YP_001943398.1| exodeoxyribonuclease V, beta subunit [Chlorobium limicola DSM 245]
 gi|189341016|gb|ACD90419.1| exodeoxyribonuclease V, beta subunit [Chlorobium limicola DSM 245]
          Length = 1226

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 8/192 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAW--SH 91
            + A+AG+GKT  +    LRLLL     P  +L +T+T+AA  E+  R+   I     + 
Sbjct: 18  LIEASAGTGKTWAITSLYLRLLLEKELRPEQILVVTYTEAATRELHARIRRRIRQALDAM 77

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D      +  +  +     +  +A  LL   L       + TIH FC   +Q    E+
Sbjct: 78  RGDPTDDPFLIDLCDRAAQAGEEERAALLLEAALAEFDTAAIFTIHGFCNRALQDHAFES 137

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
                  I        L  E            + + L    Y +L+  + +     +  +
Sbjct: 138 GALYDTEIV--TDQSALAREVIDDFWRERFFGSADRLLG--YALLKGWSPDAFMAFLKSL 193

Query: 212 -ISNRTALKLIF 222
            +S R  +  ++
Sbjct: 194 QLSGRDEVIPVY 205


>gi|260909824|ref|ZP_05916516.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
 gi|260636055|gb|EEX54053.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
          Length = 1627

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 80/202 (39%), Gaps = 54/202 (26%)

Query: 22   SEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSH 80
             +Q++    TR   V+A  GSGKT +LV ++   LLL +     LL LT ++AAA E   
Sbjct: 1078 QKQIITDKDTRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQ 1137

Query: 81   RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            R+++++   +H  +                                      ++T HA+C
Sbjct: 1138 RLMKLVGNAAHFVE--------------------------------------IKTFHAYC 1159

Query: 141  EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
              ++              I + E +K ++ +A +      +  N   + KA   I E  +
Sbjct: 1160 FDLLG------------RIGNLEDAKDVVRKAAQMINEGEVEPNK--IGKAVLVIDEAQD 1205

Query: 201  DEDIE-TLISDIISNRTALKLI 221
              + E  L+  +++    +++I
Sbjct: 1206 MGEAEFALVEALMAQNEDMRVI 1227


>gi|167627557|ref|YP_001678057.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597558|gb|ABZ87556.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 1185

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 16/156 (10%)

Query: 35  WVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +    +R LL     P  +L +T TK A  E+  RV   I       
Sbjct: 16  IIEASAGTGKTFNITTLYIRLLLEKKLLPKDILVMTFTKDATQEIIGRVEAKIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D +   +  K      +   + +A       L       + TIH FC+ ++ +    + I
Sbjct: 70  DVLADHKSGKEVLSDEDYKHIKRA-------LLEVDEAAIFTIHGFCKKVLSEQAFASGI 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                ++ E  +  ++++  +      +  N    +
Sbjct: 123 --EMDVSMEVDTSDILQKVVEDFFRKHINKNKTNFE 156


>gi|294676837|ref|YP_003577452.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
 gi|294475657|gb|ADE85045.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
          Length = 1049

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 31/137 (22%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A AG+GKT  + + V   + A    P  +L +T T+AAAAE+  R+   + A   ++
Sbjct: 6   LVPAGAGAGKTTRIQRTVAGWVSAGLVAPGRILAVTFTEAAAAELKARIRAQLIAQDQVA 65

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           + +                ++ +A               + TIH   + ++ +    A  
Sbjct: 66  EAL----------------ELERAY--------------IGTIHGLGQRLLTEHAFGAGR 95

Query: 154 TSHFAIADEEQSKKLIE 170
                +  E +   LI 
Sbjct: 96  APVSRLLTEAERDLLIR 112


>gi|253688921|ref|YP_003018111.1| UvrD/REP helicase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755499|gb|ACT13575.1| UvrD/REP helicase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 685

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           + Q   ET++      S+     +      V A AGSGKT +LV R   L+    A P  
Sbjct: 184 AEQSFFETVESSPLNVSQSKAVINGEEGVLVLAGAGSGKTSVLVARAAWLMHRQEAAPDQ 243

Query: 65  LLCLTHTKAAAAEMSHRVLEII-------TAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           +L L   + AA EM+ R+ E +         +  L+  I+     K       +SD  + 
Sbjct: 244 ILLLAFGRKAAEEMNERIQERLHTDEIQAKTFHALALHIIQQASRKAPMISQLESDAKQR 303

Query: 118 RHLLIT 123
           R LLI+
Sbjct: 304 RELLIS 309


>gi|254458799|ref|ZP_05072223.1| UvrD/REP helicase subfamily [Campylobacterales bacterium GD 1]
 gi|207084565|gb|EDZ61853.1| UvrD/REP helicase subfamily [Campylobacterales bacterium GD 1]
          Length = 682

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 41/166 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           +  + +++++S+ +  S+      + A AGSGKT  +V R+  L+ +     S  L LT 
Sbjct: 3   KIFEKLNESQSQAVKQSE--GPVLILAGAGSGKTTTIVSRLAYLVEVLGIPASNTLTLTF 60

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AA EM  R L++I   S+                                       
Sbjct: 61  TNKAAKEMRERALDMIKDISYPPLL----------------------------------- 85

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
               T H F    ++      N  ++F + D +  K++I++     
Sbjct: 86  ---CTFHKFGLLFLKFNIHLLNRQNNFVVIDTDDKKRIIKKINSEI 128


>gi|118576323|ref|YP_876066.1| superfamily I helicase [Cenarchaeum symbiosum A]
 gi|118194844|gb|ABK77762.1| superfamily I helicase [Cenarchaeum symbiosum A]
          Length = 916

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 41/137 (29%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A  GSGKT  + +R+  L+   A PS ++  T T  AA  +  R+  +++A     D++ 
Sbjct: 2   ACPGSGKTETVSRRIAELIKKGAAPSKIVAFTFTNRAADSLRFRINRVVSAECGRVDDL- 60

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH- 156
                                          G + V TI ++C  ++++      +    
Sbjct: 61  -------------------------------GSMYVGTIDSYCLQLLKE------LKPEY 83

Query: 157 --FAIADEEQSKKLIEE 171
             F I DE +    ++ 
Sbjct: 84  RPFEILDEAKQAAFVDR 100


>gi|283835413|ref|ZP_06355154.1| exodeoxyribonuclease V, beta subunit [Citrobacter youngae ATCC
           29220]
 gi|291068585|gb|EFE06694.1| exodeoxyribonuclease V, beta subunit [Citrobacter youngae ATCC
           29220]
          Length = 1181

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           +      +      +D  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRETTDNPLYAR-LLDEIADKEQAAKWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A            + ++ +  +E       +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLSRDIAQVIFE-----TWKGPQ 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLRDI 197


>gi|288933724|ref|YP_003437783.1| exodeoxyribonuclease V subunit beta [Klebsiella variicola At-22]
 gi|288888453|gb|ADC56771.1| exodeoxyribonuclease V, beta subunit [Klebsiella variicola At-22]
          Length = 1178

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 23/213 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGESAYSRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           I     + L  E  +   + +  +  +K D +K    L+          V TIH FC+ +
Sbjct: 80  IHELRIACLRGESDNPLYSALLAEIVDKDDAAKT---LLLAERQMDEAAVFTIHGFCQRM 136

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           +     E+ +     + ++E   +L  +A              ++    +++ +   D  
Sbjct: 137 LSLNAFESGMLFEQQLIEDE--SRLRYQACADFWRRHCYPLTRDIAAVIHDVWKGPRD-- 192

Query: 204 IETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
              L+  +  +R          S     + + +
Sbjct: 193 ---LLKSL--DRWLQGEAPQLKSPPAPDETLAE 220


>gi|253800233|ref|YP_003033234.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233809|ref|ZP_04927134.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis C]
 gi|124599338|gb|EAY58442.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis C]
 gi|253321736|gb|ACT26339.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           1435]
          Length = 729

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
           LI+    +Q  A   P     V A AG+GKT  +  R+  L+ +       +L +T T+ 
Sbjct: 37  LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 96

Query: 74  AAAEMSHRVLEI 85
           AA EM  R+  +
Sbjct: 97  AAGEMRSRLRAL 108


>gi|297520068|ref|ZP_06938454.1| DNA helicase IV [Escherichia coli OP50]
          Length = 590

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              + +    ++      ++     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 88  LTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASP 147

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             +L L   + AA EM  R+ E +      +    +  +  IQ
Sbjct: 148 EQILLLAFGRKAAEEMDERIRERLHTEDITARTFHALALHIIQ 190


>gi|291454012|ref|ZP_06593402.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356961|gb|EFE83863.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1125

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 41/158 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +         V A  G+GKT  LV+ V   L A   P  +L LT ++ AA ++  R
Sbjct: 43  AQRAVVDHGAGPLLVLAGPGTGKTTTLVESVAARLAAGTPPERILVLTFSRRAAVDLRDR 102

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + + ++                                       T    +  T H+FC 
Sbjct: 103 MAQRLS---------------------------------------TATAPRATTFHSFCY 123

Query: 142 AIMQQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLA 178
           A+++    +A++ +    +    +    + E     + 
Sbjct: 124 ALVRAH-QDADLFAEPLRLLSGPEQDVAVRELLAGQIE 160


>gi|229084316|ref|ZP_04216597.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-44]
 gi|228698973|gb|EEL51677.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-44]
          Length = 644

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 73/219 (33%), Gaps = 52/219 (23%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E
Sbjct: 8   LNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLINVKHVHPRNILLLTFTQKAAEE 67

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV  +       S  +++                                    T H
Sbjct: 68  IRSRVASLPGMNRAASQYVVA-----------------------------------GTFH 92

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +    +++       I     +A+E+  + +I++  K     +  D + E   A   + +
Sbjct: 93  SVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKEL--RLKDDYDAETMLAMISLEK 145

Query: 198 ISNDE--------DIETLISDIISNRTALKLIFFFFSYL 228
              +          +E    ++      +K  + +  + 
Sbjct: 146 NKLNRPKDVQAKTPVEQEFREVYERYEDVKQRYGYIDFD 184


>gi|295702881|ref|YP_003595956.1| ATP-dependent DNA helicase [Bacillus megaterium DSM 319]
 gi|294800540|gb|ADF37606.1| ATP-dependent DNA helicase [Bacillus megaterium DSM 319]
          Length = 772

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 41/143 (28%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           Y N F+E    +D            +       + A AGSGKT +L  R   ++      
Sbjct: 139 YLNEFKESGIELDSNQWK-----AVTHSEGPLLILAGAGSGKTRVLTARTAYMIQEKQID 193

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P +++ +T T  +A EM  R+                          P  S +   + L 
Sbjct: 194 PKSIMLVTFTAKSAKEMKERL-----------------------ATYPKMSGLHLRQML- 229

Query: 122 ITILETPGGLKVQTIHAFCEAIM 144
                      V T H+    ++
Sbjct: 230 -----------VGTFHSIFLRMI 241


>gi|260188240|ref|ZP_05765714.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          CPHL_A]
 gi|289448880|ref|ZP_06438624.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          CPHL_A]
 gi|289421838|gb|EFD19039.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          CPHL_A]
          Length = 700

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          LI+    +Q  A   P     V A AG+GKT  +  R+  L+ +       +L +T T+ 
Sbjct: 8  LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+  +
Sbjct: 68 AAGEMRSRLRAL 79


>gi|34762638|ref|ZP_00143631.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887718|gb|EAA24794.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 693

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 38/116 (32%)

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
              P ++L +T T  AA EM  RV E++   +                            
Sbjct: 6   GISPYSILAVTFTNKAAKEMRERVEELVGDIAKAC------------------------- 40

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
                         + T H+F   +++ +  E    S+F I D +  K++++   K
Sbjct: 41  -------------TISTFHSFGMRLLRMYAKEVEYNSNFTIYDTDDQKRIVKAILK 83


>gi|215405203|ref|ZP_03417384.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          02_1987]
 gi|289747010|ref|ZP_06506388.1| DNA helicase II [Mycobacterium tuberculosis 02_1987]
 gi|289687538|gb|EFD55026.1| DNA helicase II [Mycobacterium tuberculosis 02_1987]
          Length = 700

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          LI+    +Q  A   P     V A AG+GKT  +  R+  L+ +       +L +T T+ 
Sbjct: 8  LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+  +
Sbjct: 68 AAGEMRSRLRAL 79


>gi|308232372|ref|ZP_07415856.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu001]
 gi|308370185|ref|ZP_07420579.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu002]
 gi|308371268|ref|ZP_07424386.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu003]
 gi|308372457|ref|ZP_07428753.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu004]
 gi|308373668|ref|ZP_07433254.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu005]
 gi|308374804|ref|ZP_07437456.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu006]
 gi|308376022|ref|ZP_07445852.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu007]
 gi|308377256|ref|ZP_07441664.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu008]
 gi|308378224|ref|ZP_07481948.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu009]
 gi|308379442|ref|ZP_07486299.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu010]
 gi|308380604|ref|ZP_07490517.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu011]
 gi|308406080|ref|ZP_07495063.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu012]
 gi|308214067|gb|EFO73466.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu001]
 gi|308324998|gb|EFP13849.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu002]
 gi|308329217|gb|EFP18068.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu003]
 gi|308333049|gb|EFP21900.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu004]
 gi|308336735|gb|EFP25586.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu005]
 gi|308340575|gb|EFP29426.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu006]
 gi|308344512|gb|EFP33363.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu007]
 gi|308348509|gb|EFP37360.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu008]
 gi|308353140|gb|EFP41991.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu009]
 gi|308356882|gb|EFP45733.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu010]
 gi|308360882|gb|EFP49733.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu011]
 gi|308364569|gb|EFP53420.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          SUMu012]
 gi|323718061|gb|EGB27243.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          CDC1551A]
          Length = 703

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          LI+    +Q  A   P     V A AG+GKT  +  R+  L+ +       +L +T T+ 
Sbjct: 11 LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 70

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+  +
Sbjct: 71 AAGEMRSRLRAL 82


>gi|240145521|ref|ZP_04744122.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
 gi|257202338|gb|EEV00623.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
          Length = 613

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 1/104 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +S   S+            V A  GSGKT ++ +R   L+ +    P+ +L +T TKAAA
Sbjct: 1   MSFNASQTRAIHHKNGPMLVLAGPGSGKTLVITERTKYLIEVCGIDPAQILVITFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            EM  R    +     ++     A    I     N S  + AR 
Sbjct: 61  TEMKRRFQRKMNRSCPVTFGTFHAVYFAILKHAYNYSADNIARE 104


>gi|218960911|ref|YP_001740686.1| hypothetical protein CLOAM0595 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729568|emb|CAO80480.1| hypothetical protein CLOAM0595 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 1113

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 27/192 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-----NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            + A+AG+GKT+ L    L L+L            +L LT T+ A AE+  R+++ +   
Sbjct: 8   IICASAGTGKTYRLSVEYLSLILKYYSKNEFSLDNILVLTFTRKATAEIRDRIIKHLELL 67

Query: 90  SHLSDEILSAEITKIQGKKPNKSDM-------SKARHLLITI----LETPGGLKVQTIHA 138
               +     +  +       K +         + R+LL++     +     L+V TI +
Sbjct: 68  VSEPETEEEQKKQQELLLNLRKLNKTKEIPLSEQERNLLLSARKELICDQSHLQVMTIDS 127

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKL-----------IEEAKKSTLASIMLDNNEE 187
           +   I +          H+ I  E   K +           + E  K+ L+  +  + +E
Sbjct: 128 YTGQIFRNIVRPLKNIEHYEIDTEAVKKIMPFLLDHLMEPDLREKIKNLLSRKVSRSLDE 187

Query: 188 LKKAFYEILEIS 199
             K F  ++E  
Sbjct: 188 YTKFFCSLIEQR 199


>gi|15610334|ref|NP_217714.1| ATP-dependent DNA helicase II UVRD2 [Mycobacterium tuberculosis
          H37Rv]
 gi|15842783|ref|NP_337820.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551]
 gi|31794374|ref|NP_856867.1| DNA helicase II [Mycobacterium bovis AF2122/97]
 gi|121639082|ref|YP_979306.1| putative DNA helicase II [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|148663056|ref|YP_001284579.1| putative ATP dependent DNA helicase UvrD2 [Mycobacterium
          tuberculosis H37Ra]
 gi|148824393|ref|YP_001289147.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          F11]
 gi|167968311|ref|ZP_02550588.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          H37Ra]
 gi|215413071|ref|ZP_03421772.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          94_M4241A]
 gi|215428668|ref|ZP_03426587.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T92]
 gi|215447494|ref|ZP_03434246.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T85]
 gi|219559249|ref|ZP_03538325.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T17]
 gi|224991574|ref|YP_002646263.1| putative DNA helicase II homolog [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|254552294|ref|ZP_05142741.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          '98-R604 INH-RIF-EM']
 gi|260202350|ref|ZP_05769841.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T46]
 gi|260206542|ref|ZP_05774033.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          K85]
 gi|289444768|ref|ZP_06434512.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T46]
 gi|289555470|ref|ZP_06444680.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          KZN 605]
 gi|289571419|ref|ZP_06451646.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T17]
 gi|289575912|ref|ZP_06456139.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          K85]
 gi|289751883|ref|ZP_06511261.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T92]
 gi|289759332|ref|ZP_06518710.1| DNA helicase II [Mycobacterium tuberculosis T85]
 gi|294993866|ref|ZP_06799557.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          210]
 gi|297635844|ref|ZP_06953624.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          KZN 4207]
 gi|297732840|ref|ZP_06961958.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          KZN R506]
 gi|298526674|ref|ZP_07014083.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|313660173|ref|ZP_07817053.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          KZN V2475]
 gi|54039837|sp|P64321|UVRD_MYCBO RecName: Full=Probable DNA helicase II homolog
 gi|54042360|sp|P64320|UVRD_MYCTU RecName: Full=Probable DNA helicase II homolog
 gi|2827608|emb|CAA16663.1| PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD2 [Mycobacterium
          tuberculosis H37Rv]
 gi|13883108|gb|AAK47634.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551]
 gi|31619970|emb|CAD95314.1| PROBABLE DNA HELICASE II HOMOLOG UVRD2 [Mycobacterium bovis
          AF2122/97]
 gi|121494730|emb|CAL73211.1| Probable dna helicase ii homolog uvrD2 [Mycobacterium bovis BCG
          str. Pasteur 1173P2]
 gi|148507208|gb|ABQ75017.1| putative ATP dependent DNA helicase UvrD2 [Mycobacterium
          tuberculosis H37Ra]
 gi|148722920|gb|ABR07545.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          F11]
 gi|224774689|dbj|BAH27495.1| putative DNA helicase II homolog [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|289417687|gb|EFD14927.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T46]
 gi|289440102|gb|EFD22595.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          KZN 605]
 gi|289540343|gb|EFD44921.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          K85]
 gi|289545173|gb|EFD48821.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T17]
 gi|289692470|gb|EFD59899.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          T92]
 gi|289714896|gb|EFD78908.1| DNA helicase II [Mycobacterium tuberculosis T85]
 gi|298496468|gb|EFI31762.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|326902576|gb|EGE49509.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          W-148]
 gi|328459968|gb|AEB05391.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
          KZN 4207]
          Length = 700

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
          LI+    +Q  A   P     V A AG+GKT  +  R+  L+ +       +L +T T+ 
Sbjct: 8  LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+  +
Sbjct: 68 AAGEMRSRLRAL 79


>gi|121636549|ref|YP_976772.1| putative exonuclease V subunit beta recBa [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224989021|ref|YP_002643708.1| putative exonuclease V subunit beta [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|121492196|emb|CAL70663.1| Probable exonuclease V (beta chain) recBa [first part]
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772134|dbj|BAH24940.1| putative exonuclease V subunit beta [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 897

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  LGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKS-- 131

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 132 --LG------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|238921998|ref|YP_002935512.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
 gi|238873670|gb|ACR73378.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
          Length = 189

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
           TK +    +    +  V++  GSGKT +L  R+  L+      PS+++ LT T  AA++M
Sbjct: 76  TKEQTEAITQTEGNIRVASVPGSGKTFVLTYRIAYLITELFVEPSSIVALTFTNKAASQM 135

Query: 79  SHRVLEI 85
            HR+ +I
Sbjct: 136 KHRLWKI 142


>gi|31791812|ref|NP_854305.1| exonuclease V subunit beta [Mycobacterium bovis AF2122/97]
 gi|31617399|emb|CAD93509.1| PROBABLE EXONUCLEASE V (BETA CHAIN) RECBA [FIRST PART]
           (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE
           V POLYPEPTIDE) [Mycobacterium bovis AF2122/97]
          Length = 897

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  LGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKS-- 131

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 132 --LG------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|329928663|ref|ZP_08282517.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
 gi|328937626|gb|EGG34041.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
          Length = 822

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 36/144 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            +   +++              A AGSGKT +LV R   L+ A    PS++L +T +  A
Sbjct: 50  GLLLNRAQIQAVRHTQGPLLTLAGAGSGKTSVLVSRTGYLIAAKSVDPSSILLVTFSSKA 109

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R++                    + G + +++    AR                
Sbjct: 110 ATEMKERIM-------------------ALPGLRSSETAKVTAR---------------- 134

Query: 135 TIHAFCEAIMQQFPLEANITSHFA 158
           T H+F   +++    +  I S+  
Sbjct: 135 TFHSFFLYLLRTRGYKQEILSNAR 158


>gi|262039829|ref|ZP_06013104.1| exodeoxyribonuclease subunit V beta [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042829|gb|EEW43825.1| exodeoxyribonuclease subunit V beta [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1178

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 19/209 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGEAAYPRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S             +D   A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRGESDNPL-YSALLAEIADKDDAAKTLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E   +L  +A              ++    +++ +   D    
Sbjct: 139 LNAFESGMLFEQQLIEDE--SRLRYQACADFWRRHCYPLTRDIAAVIHDVWKGPRD---- 192

Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKII 234
            L+  +  +R          S     + +
Sbjct: 193 -LLKSL--DRWLQGEAPQLKSPPAPNETL 218


>gi|239908800|ref|YP_002955542.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239798667|dbj|BAH77656.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 617

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 45/217 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +S    +   A   T  A V A  GSGKT  + +R+ RL+      P  +L LT+T+ AA
Sbjct: 1   MSLNAKQLEAAQFHTGIALVVAVPGSGKTKTMTERIGRLVNDHGIAPENILGLTYTRQAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R+  ++   +                                        + + T
Sbjct: 61  EQMRERLELVLHGEA--------------------------------------SRVHLYT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFA----IADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           IH+FC  +++      NI S       ++   +S  + + A    L  I L  +  +   
Sbjct: 83  IHSFCLRLLKSEGRYFNIVSGSEQMTMVSTIMRSLGVKDLAIGGVLQDISLAKSNLISP- 141

Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
             E +E+  ++  +   + +       K I + + + 
Sbjct: 142 -EEFIELYGEDQSKQKTAMVFKEYEEQKAIRYLYDFD 177


>gi|15615397|ref|NP_243700.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
 gi|10175455|dbj|BAB06553.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 780

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 36/125 (28%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              +    +       + A AGSGKT +L  R   ++      P ++L +T T+ AA EM
Sbjct: 150 NDDQWQAITTTEGPLLIIAGAGSGKTRVLTTRAAYMISEQQIDPLSMLLVTFTQKAAREM 209

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+                                                L + T H+
Sbjct: 210 QERMS-----------------------------------TYFTLPTNRLKRLAIGTFHS 234

Query: 139 FCEAI 143
               I
Sbjct: 235 IFYRI 239


>gi|184200508|ref|YP_001854715.1| putative ATP-dependent DNA helicase [Kocuria rhizophila DC2201]
 gi|183580738|dbj|BAG29209.1| ATP-dependent DNA helicase UvrD2 [Kocuria rhizophila DC2201]
          Length = 596

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PST 64
           S ++ +E   L      ++++A+       V A AG+GKT  +  R+   + +  + P  
Sbjct: 2   SLEQSAEERILGGLDPEQRVVATTLNGPVCVRAGAGTGKTRAITHRIAWGIASGVYTPQK 61

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
            L LT T  AA EM  R+   + A    +    SA + ++Q   P  
Sbjct: 62  TLALTFTARAANEMRQRLR-ALGAPGVQARTFHSAALRQLQYFWPQA 107


>gi|315655631|ref|ZP_07908529.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
 gi|315489695|gb|EFU79322.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
          Length = 519

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
            ++ +D + + + E  +A     +  V A AG+GKT  +  R+   + +   +P  +L 
Sbjct: 15 SAAQLLDDLDEQQRE--VAQHQHGALCVLAGAGTGKTRAITYRIAYGVRSGQVNPENVLA 72

Query: 68 LTHTKAAAAEMSHRVL 83
          LT T+ AAAEM  R+ 
Sbjct: 73 LTFTQKAAAEMKTRLE 88


>gi|152969548|ref|YP_001334657.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954397|gb|ABR76427.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 684

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              ++E  ++++      S+     +  RS  V A AGSGKT +LV R   LL    A  
Sbjct: 182 LEQYREFFDSVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAAA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITA-------WSHLSDEILSAEITKIQGKKPNKSDMS 115
             +L L   + AA EM  R+ E + +       +  L+  I+     K+      +SD +
Sbjct: 242 DQILLLAFGRQAAQEMDERIRERLASDDITARTFHSLALHIIQQGSKKVPTISKLESDTA 301

Query: 116 KARHLLIT 123
             R LL+ 
Sbjct: 302 ARRALLLK 309


>gi|255326998|ref|ZP_05368074.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296215|gb|EET75556.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 644

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 79/203 (38%), Gaps = 24/203 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74
           L      ++ +A++      V A AG+GKT  +  R+   +    +    +L LT T  A
Sbjct: 18  LAGLDPDQRAVATELDGPMRVLAGAGTGKTRAITHRIAYGIAIGRYQGPRVLALTFTLRA 77

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGL 131
           A EM  R+ + + A+   +    SA + ++    P     +  S  ++    I E    L
Sbjct: 78  AEEMRTRLHQ-LGAYGVQARTFHSAALRQLAYFWPQVVGGTFPSIVQNKAALITEAANRL 136

Query: 132 KVQTIHAFCEAIMQQFPLEAN------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           ++ T      ++++             +T             +   ++K   +++   N 
Sbjct: 137 RIST----DRSLLRDLASLIEWAKVQLLTPD---------TIMQRLSEKQLPSAVTPQNM 183

Query: 186 EELKKAFYEILEISNDEDIETLI 208
           + + +A+ ++ +  N  D E ++
Sbjct: 184 QRIFQAYEDLKDERNLIDFEDVL 206


>gi|237729781|ref|ZP_04560262.1| exonuclease V subunit beta [Citrobacter sp. 30_2]
 gi|226908387|gb|EEH94305.1| exonuclease V subunit beta [Citrobacter sp. 30_2]
          Length = 1181

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           +      +      +D  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRETTDNPLYAR-LLDEIADKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +E       +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFE-----TWKGPQ 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLRDI 197


>gi|239944120|ref|ZP_04696057.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 591

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 41/153 (26%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
              P     V A  G+GKT  LV+ V   +     P+ +L LT ++ AA E+  R+   +
Sbjct: 2   VDHPGGPLLVLAGPGTGKTTTLVESVAARVNRGGDPARILVLTFSRKAAVELRDRMAARL 61

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
            A                                         G +  T H++C A+++ 
Sbjct: 62  GAAR---------------------------------------GPQATTFHSYCYALVRA 82

Query: 147 FPLEANITSHF-AIADEEQSKKLIEEAKKSTLA 178
              +A++ +    +    +    + E     L 
Sbjct: 83  H-QDADLFADPLRLLSGPEQDVTVRELLAGQLD 114


>gi|298345209|ref|YP_003717896.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|304390769|ref|ZP_07372721.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|298235270|gb|ADI66402.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|304325652|gb|EFL92898.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 519

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 13 TIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           + L+     +Q  +A     +  V A AG+GKT  +  R+   + +   +P  +L LT 
Sbjct: 16 AVQLLDDLDEQQREVAQHQHGALCVLAGAGTGKTRAITYRIAYGVRSGQVNPENVLALTF 75

Query: 71 TKAAAAEMSHRVL 83
          T+ AAAEM  R+ 
Sbjct: 76 TQKAAAEMKTRLE 88


>gi|157146346|ref|YP_001453665.1| DNA helicase IV [Citrobacter koseri ATCC BAA-895]
 gi|157083551|gb|ABV13229.1| hypothetical protein CKO_02105 [Citrobacter koseri ATCC BAA-895]
          Length = 684

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 5/135 (3%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-A 60
           +    + +  + I+      ++     +   S  V A AGSGKT +LV R   LL    A
Sbjct: 180 VMLTEYADFFQNIESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEA 239

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
               +L L   + AA EM  R+ E +   +  +    +  +  IQ        +SK    
Sbjct: 240 AAEQILLLAFGRKAAEEMDERIRERLHTDAIAARTFHALALHIIQQGSKKVPTISK---- 295

Query: 121 LITILETPGGLKVQT 135
           L         L ++T
Sbjct: 296 LENDAAARHKLFIKT 310


>gi|330009177|ref|ZP_08306461.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. MS 92-3]
 gi|328534896|gb|EGF61433.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. MS 92-3]
          Length = 1178

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 19/211 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGEAAYPRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S             +D   A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRGESDNPL-YSALLAEIADKDDAAKTLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E   +L  +A              ++    +++ +   D    
Sbjct: 139 LNAFESGMLFEQQLIEDE--SRLRYQACADFWRRHCYPLTRDIAAVIHDVWKGPRD---- 192

Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            L+  +  +R          S     + + +
Sbjct: 193 -LLKSL--DRWLQGEAPQLKSPPAPNETLAE 220


>gi|307328519|ref|ZP_07607693.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885787|gb|EFN16799.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 764

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
              ++ +A+    +  V A AG+GKT  +  R+   + A    P+++L +T T  AA EM
Sbjct: 34  DPEQREVATSLHGAVCVLAGAGTGKTRAITHRIAYGVRAGMLQPASVLAVTFTNRAAGEM 93

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             R+ + + A    +    SA + ++Q   P  
Sbjct: 94  RGRLRQ-LGAGGVQARTFHSAALRQLQYFWPKA 125


>gi|254823035|ref|ZP_05228036.1| exodeoxyribonuclease V, beta subunit [Mycobacterium intracellulare
           ATCC 13950]
          Length = 1100

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 12/191 (6%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
            DL+    +E+        +  + A+AG+GKT  L   V R L    A    +L +T  +
Sbjct: 4   FDLLGPLPAER-------STTVLEASAGTGKTFALAGLVTRYLADGAASLDQMLLITFGR 56

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGG 130
           AA+ E+  RV   I        +  +    ++     + +D   +  R  L   L     
Sbjct: 57  AASQELRERVRCQIVDAVRAFADPSTVGDNQLVAYLLDGTDDQRAARRQRLRDALAGFDA 116

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             + T H FC+ +++   +  +  +   + D      L+ E       +      ++   
Sbjct: 117 ATIATTHQFCQLVLRSLGVAGDTAASVTLLDSLD--DLVTEIVDDLYLAHFGQERDDPAL 174

Query: 191 AFYEILEISND 201
            + E L ++ +
Sbjct: 175 HYSEALRLARE 185


>gi|315446057|ref|YP_004078936.1| DNA helicase/exodeoxyribonuclease V subunit beta [Mycobacterium sp.
           Spyr1]
 gi|315264360|gb|ADU01102.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           sp. Spyr1]
          Length = 1109

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 6/164 (3%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIIT 87
           +P  +  + A+AG+GKT  L   V R +         +L +T  +AA+ E+  RV   I 
Sbjct: 12  EPRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDRMLLITFGRAASQELRERVRSQIL 71

Query: 88  AWSHLSDEILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 D+  +    ++       +  +    R  L   L       + T H FC+ +++
Sbjct: 72  DALRAFDDPAAIGDNEVVRHLVTGDAEECDARRRRLRDALAGFDAATIATTHQFCQLVLR 131

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEEL 188
              +  +  S   + +      L+ E      LA    D +E L
Sbjct: 132 SLGVAGDTDSGVELVESLD--DLVAEIVDDLYLAHFGQDRDEPL 173


>gi|183981387|ref|YP_001849678.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium marinum M]
 gi|183174713|gb|ACC39823.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium marinum M]
          Length = 709

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++     P     V A AG+GKT  +  R+ +L+ +       +L +T T+ AA EM
Sbjct: 23 DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVASGHVAAGQVLAVTFTQRAAGEM 82

Query: 79 SHRVL 83
            R+ 
Sbjct: 83 RARLR 87


>gi|152971748|ref|YP_001336857.1| exonuclease V subunit beta [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238896335|ref|YP_002921071.1| exonuclease V subunit beta [Klebsiella pneumoniae NTUH-K2044]
 gi|150956597|gb|ABR78627.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548653|dbj|BAH65004.1| exonuclease V beta subunit [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 1178

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 19/211 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGEAAYPRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S             +D   A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRGESDNPL-YSALLAEIADKDDAAKTLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E   +L  +A              ++    +++ +   D    
Sbjct: 139 LNAFESGMLFEQQLIEDE--SRLRYQACADFWRRHCYPLTRDIAAVIHDVWKGPRD---- 192

Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            L+  +  +R          S     + + +
Sbjct: 193 -LLKSL--DRWLQGEAPQLKSPPAPNETLAE 220


>gi|50120689|ref|YP_049856.1| DNA helicase IV [Pectobacterium atrosepticum SCRI1043]
 gi|49611215|emb|CAG74661.1| helicase IV [Pectobacterium atrosepticum SCRI1043]
          Length = 685

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           + Q   ET++      S+     +      V A AGSGKT +LV R   L+    A P  
Sbjct: 184 AEQPFFETVESSPLNMSQSKAVINGEEGVLVLAGAGSGKTSVLVARAAWLMHRQEATPDQ 243

Query: 65  LLCLTHTKAAAAEMSHRVLEII-------TAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           +L L   + AA EM+ R+ E +         +  L+  I+     K       +SD  + 
Sbjct: 244 ILLLAFGRKAAEEMNERIHERLHTDEIQAKTFHALALHIIQQASRKAPMISQLESDAKQR 303

Query: 118 RHLLIT 123
           R LLI+
Sbjct: 304 RELLIS 309


>gi|297626185|ref|YP_003687948.1| Exodeoxyribonuclease V beta chain RecB [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921950|emb|CBL56510.1| Exodeoxyribonuclease V beta chain RecB [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1120

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 10/170 (5%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
            ID ++    + + A  P  +    A AG+GKT+ +     + L         ++ +T  
Sbjct: 1   MIDRMNPRPFDPVAALPPHTTVL-EAGAGTGKTYTIAALTAQALARGQVTIERVMLVTFA 59

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITIL 125
           +AA+ E+  RV E +   +   D  L+       +             ++     L   L
Sbjct: 60  RAASYELRSRVHERLRNTATAIDATLAGIPPTDPDAVDADLCAGEADVLTARLARLRAAL 119

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                  + T H FC  ++ Q  +  +     +  D+     L  +    
Sbjct: 120 ADFDRATIATTHEFCARLLDQLGILVDHDRFSSFLDDPDQ--LRAQVIDD 167


>gi|226304347|ref|YP_002764305.1| exodeoxyribonuclease V beta chain [Rhodococcus erythropolis PR4]
 gi|226183462|dbj|BAH31566.1| exodeoxyribonuclease V beta chain [Rhodococcus erythropolis PR4]
          Length = 1105

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 15/159 (9%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           PT +  + A+AG+GKT+ +V    R +    A  S +L +T ++AA  E+  R  E    
Sbjct: 10  PTGTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELRERARERFAG 69

Query: 89  WSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            S    +  +A  +           +  ++   R  L+  L       + T H+FC+ ++
Sbjct: 70  VSAALVDPEAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITTTHSFCQRML 129

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                   +     IA E +      E+    ++ ++ D
Sbjct: 130 D------GLG----IAGEREPDTTFVESVDDLISEVVSD 158


>gi|145225706|ref|YP_001136384.1| exodeoxyribonuclease V, beta subunit [Mycobacterium gilvum PYR-GCK]
 gi|145218192|gb|ABP47596.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           gilvum PYR-GCK]
          Length = 1109

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 6/164 (3%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIIT 87
           +P  +  + A+AG+GKT  L   V R +         +L +T  +AA+ E+  RV   I 
Sbjct: 12  EPRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDRMLLITFGRAASQELRERVRSQIV 71

Query: 88  AWSHLSDEILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 D+  +    ++       +  +    R  L   L       + T H FC+ +++
Sbjct: 72  DALRAFDDPAAIGDNEVVRHLVTGDAEECDARRRRLRDALAGFDAATIATTHQFCQLVLR 131

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEEL 188
              +  +  S   + +      L+ E      LA    D +E L
Sbjct: 132 SLGVAGDTDSGVELVESLD--DLVAEIVDDLYLAHFGQDRDEPL 173


>gi|229494476|ref|ZP_04388239.1| exodeoxyribonuclease V, beta subunit [Rhodococcus erythropolis
           SK121]
 gi|229318838|gb|EEN84696.1| exodeoxyribonuclease V, beta subunit [Rhodococcus erythropolis
           SK121]
          Length = 1105

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 15/159 (9%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           PT +  + A+AG+GKT+ +V    R +    A  S +L +T ++AA  E+  R  E    
Sbjct: 10  PTGTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELRERARERFAG 69

Query: 89  WSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            S    +  +A  +           +  ++   R  L+  L       + T H+FC+ ++
Sbjct: 70  VSAALVDPEAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITTTHSFCQRML 129

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                   +     IA E +      E+    ++ ++ D
Sbjct: 130 D------GLG----IAGEREPDTTFVESVDDLISEVVSD 158


>gi|221369953|ref|YP_002521049.1| hypothetical protein RSKD131_4116 [Rhodobacter sphaeroides KD131]
 gi|221163005|gb|ACM03976.1| Hypothetical Protein RSKD131_4116 [Rhodobacter sphaeroides KD131]
          Length = 791

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 38/129 (29%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           S  +S+  +A  P  +   V A  GSGKTH+  +RV+ L+      PS +L L+ T+ A 
Sbjct: 212 SPDESQLRVAHAPAGTRMLVEAGPGSGKTHVACERVISLVQDEGIAPSRILLLSFTRIAV 271

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  R+   +                                      +     L+++T
Sbjct: 272 AELRDRIGRRLNE------------------------------------VPNVAALQIRT 295

Query: 136 IHAFCEAIM 144
             +F   ++
Sbjct: 296 FDSFAARLL 304


>gi|288553378|ref|YP_003425313.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
 gi|288544538|gb|ADC48421.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
          Length = 785

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            IS    +   A+       + A AGSGKT +L  R   +L   N  P  ++ +T T  A
Sbjct: 145 GISLDDQQWNAATTTEGPLLILAGAGSGKTRVLTTRAAYMLTEKNYSPKQMILVTFTAKA 204

Query: 75  AAEMSHR 81
           A EM  R
Sbjct: 205 AKEMKER 211


>gi|118617994|ref|YP_906326.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium ulcerans
          Agy99]
 gi|118570104|gb|ABL04855.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium ulcerans
          Agy99]
          Length = 699

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++     P     V A AG+GKT  +  R+ +L+ +       +L +T T+ AA EM
Sbjct: 13 DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVASGHVAAGQVLAVTFTQRAAGEM 72

Query: 79 SHRVL 83
            R+ 
Sbjct: 73 RARLR 77


>gi|167758421|ref|ZP_02430548.1| hypothetical protein CLOSCI_00761 [Clostridium scindens ATCC
          35704]
 gi|167664318|gb|EDS08448.1| hypothetical protein CLOSCI_00761 [Clostridium scindens ATCC
          35704]
          Length = 615

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +S   ++    +       V A  GSGKT  + +R+  L+      P  +L +T TK AA
Sbjct: 1  MSLNHAQAEAVAHKEGPCMVLAGPGSGKTLTIAKRIEYLIRKYKVRPEEILVITFTKYAA 60

Query: 76 AEMSHRVLEIITAWSH 91
           EM  R   ++   + 
Sbjct: 61 KEMKERTRRLLGEEAQ 76


>gi|21672704|ref|NP_660771.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25008435|sp|Q8K9A9|EX5B_BUCAP RecName: Full=Exodeoxyribonuclease V beta chain
 gi|21623346|gb|AAM67982.1| exodeoxyribonuclease V 135 kD polypeptide [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
          Length = 1179

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 28/193 (14%)

Query: 35  WVSANAGSGKTHILV--------------QRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
            + A+AG+GKT  +               + + +L         +L +T T AA  E+  
Sbjct: 36  LIEASAGTGKTSTIAFLYLRLLLGLEKNKENIRKL-----SVKEILVVTFTNAAKEELYI 90

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ + I        +  S +    Q       +  +A H+L           + TIH FC
Sbjct: 91  RIKKSIKELHLSCIKKKSKDPI-FQSFLTKIKNFDEAIHILEDAKININNAAIYTIHGFC 149

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           + +++       + S+  I + E    L  +A +        +  +++ K  YE  E  +
Sbjct: 150 QDVLENNT----LISNREIIENE--SFLYLQATQDFWRYFFYNLPKKIIKIIYE--EYRS 201

Query: 201 DEDIETLISDIIS 213
            ED+   I  I+ 
Sbjct: 202 PEDLLREIKPILK 214


>gi|226324828|ref|ZP_03800346.1| hypothetical protein COPCOM_02615 [Coprococcus comes ATCC 27758]
 gi|225207276|gb|EEG89630.1| hypothetical protein COPCOM_02615 [Coprococcus comes ATCC 27758]
          Length = 406

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 48/225 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +   + +            V A  GSGKT I+ +R   L+      P  +L +T T+ AA
Sbjct: 1   MKLNRGQDEAIKHGNGPCMVLAPPGSGKTLIVTERTRYLIEESGVRPDQILVITFTRYAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R  E +TA  +                                           T
Sbjct: 61  REMKER-FERLTAGKNYPVTF-------------------------------------GT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST--LASIMLDNNEELKKAFY 193
            H+    I++       I ++  +  E++S  L++E    T   ++  +++ EEL +   
Sbjct: 83  FHSIFYGILKCAY---GIGAN-NLMSEKESSVLLQEVLDQTNIESTPEVEDEEELVRELL 138

Query: 194 EILEISNDEDIETLISDIISNR-TALKLIFFFFSYLWRRKIIEKS 237
             + +  +      + D  S   T  +    F SY  ++K ++K 
Sbjct: 139 REVGMVKNGLYH--LKDFHSKYLTQDEFAEVFRSYEHQKKELKKF 181


>gi|288921365|ref|ZP_06415645.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288347217|gb|EFC81514.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1148

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 39/162 (24%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +  I    ++  +         V A  G+GKT  LV+ V R + A A P++LL LT ++
Sbjct: 1   MVSPIVLDAAQAEVVGHAGGPLLVLAGPGTGKTTTLVEAVARRVEAGADPASLLVLTFSR 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA  +  R+   + A +                                          
Sbjct: 61  RAARHLRERLAVRLGAGAVGPAAW------------------------------------ 84

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             T HA+C A+++ +  +   +    +    +    + +  +
Sbjct: 85  --TFHAWCLALLRVYGADT-ASGGPRLLSGPEQDARLRDLLE 123


>gi|260904116|ref|ZP_05912438.1| superfamily I DNA/RNA helicase [Brevibacterium linens BL2]
          Length = 679

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           + ++ +A+  +    V A AG+GKT  +  R+   +      P+ +L LT T  AA EM
Sbjct: 13 DEEQREVATHFSSPVIVLAGAGTGKTRAMTHRIAYGIATEVFPPNHVLALTFTAKAAGEM 72

Query: 79 SHRVLEI 85
            R+ ++
Sbjct: 73 RSRLRDL 79


>gi|227111642|ref|ZP_03825298.1| DNA helicase IV [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 685

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP 62
             + Q   ET++      S+     +      V A AGSGKT +LV R   L+    A P
Sbjct: 182 LTAEQPFFETVESSPLNMSQSKAVINGEEGVLVLAGAGSGKTSVLVARAAWLMHRQEATP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEII-------TAWSHLSDEILSAEITKIQGKKPNKSDMS 115
             +L L   + AA EM+ R+ E +         +  L+  I+     K       +SD  
Sbjct: 242 DQILLLAFGRKAAEEMNDRIRERLHTDEIQAKTFHALALHIIQQASRKAPMISQLESDAK 301

Query: 116 KARHLLIT 123
           + R LLI+
Sbjct: 302 QRRELLIS 309


>gi|56552380|ref|YP_163219.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543954|gb|AAV90108.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 1047

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 62/237 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           L +    ++  A    ++  V A  GSGKT +L QR+  L+   A P    L LT T+ A
Sbjct: 476 LSTLDSDQKAAALITDKALMVLAGPGSGKTKMLTQRIAHLIQEKAIPAEKCLLLTFTRRA 535

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E+  RV +++                                     I+ +       
Sbjct: 536 TDELKARVKQLLPETESPP------------------------------IIHS------- 558

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-------KKSTLA--------- 178
             H+    ++++      + + F I D +  KK   E            L          
Sbjct: 559 -FHSLALDMLKKDSKAFGLAADFRIVDPQSLKKAFMEMSNLSSKRADEALERFSLLKRSG 617

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDII-------SNRTALKLIFFFFSYL 228
            +     E L+++   + + ++  D + L+  ++       S R      F F S  
Sbjct: 618 EVGDLEEEILRQSLENLKQDNHWLDFDDLLIKVVNGLENNASLREKWATAFSFLSVD 674


>gi|21245048|ref|NP_644630.1| exodeoxyribonuclease V subunit beta [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21110779|gb|AAM39166.1| exodeoxyribonuclease V beta chain [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 1243

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 44/208 (21%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA--------------AAEM- 78
            + A+AG+GKT  L     RL++        +L +T T+AA              AA + 
Sbjct: 20  LIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAATQELRRRIRERLVLAASLV 79

Query: 79  ---------SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA-------RHLLI 122
                    +      +         +L A    +       + ++ A       R  L 
Sbjct: 80  PDAPPPFVGAALAAGDLADDPSRPGPLLHATPDVLLTGAILATHLAGASETPAALRRRLQ 139

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEAN--------ITSHFAIADEEQSKKLIEEAKK 174
             +E      V TIH FC  ++++  LE+         + +   +  E  +    + A  
Sbjct: 140 QAVEEIDLAAVFTIHGFCARVLREHALESGQAFAAPELLANDRELLGEVAADLWRQRAAD 199

Query: 175 STLAS----IMLDNNEELKKAFYEILEI 198
           + +A     +     E L      ++  
Sbjct: 200 AVMAEDLIALWSGGPEALASDLRALVRH 227


>gi|41409395|ref|NP_962231.1| hypothetical protein MAP3297c [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41398226|gb|AAS05847.1| UvrD2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 703

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++     P     V A AG+GKT  +  R+ +L+       + +L +T T+ AA EM
Sbjct: 13 DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAANQVLAVTFTQRAAGEM 72

Query: 79 SHRVL 83
            R+ 
Sbjct: 73 RSRLR 77


>gi|163756939|ref|ZP_02164046.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1]
 gi|161323058|gb|EDP94400.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1]
          Length = 914

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 75/179 (41%), Gaps = 37/179 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           +  TK +    +    +  + A AG+GKT ++ QR++ +L   +  P  ++  T+T+ AA
Sbjct: 1   MQYTKEQHSAINTIKDNLQIIACAGAGKTQVISQRLVEVLKQKDVEPINVIAFTYTEKAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AE+  RVL++              ++  I+G                        + + T
Sbjct: 61  AELKTRVLKL-----------CREQLGDIKG---------------------LADMYIGT 88

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAFY 193
           IH++C   +Q    +      ++I D+ + K  +++      +AS+ +D  ++  +   
Sbjct: 89  IHSWCLQAIQDNIFK---YQKYSILDDIKQKLFVDKYYNFIGMASVGMDRYKDTGRFLA 144


>gi|325298710|ref|YP_004258627.1| ATP-dependent DNA helicase, RecQ family [Bacteroides salanitronis DSM
            18170]
 gi|324318263|gb|ADY36154.1| ATP-dependent DNA helicase, RecQ family [Bacteroides salanitronis DSM
            18170]
          Length = 1644

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 40/138 (28%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
            Q++++    +S+ + E ++++  +R   V+A  GSGKT +LV ++  LLL  +     LL
Sbjct: 1084 QKYNQLFGQLSKRQME-IISNKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1142

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             LT ++AAA E   R++E+I   +H  +                                
Sbjct: 1143 MLTFSRAAATEFKQRLMELIGNAAHFVE-------------------------------- 1170

Query: 127  TPGGLKVQTIHAFCEAIM 144
                  ++T H++C  ++
Sbjct: 1171 ------IKTFHSYCFDLL 1182


>gi|269127944|ref|YP_003301314.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312902|gb|ACY99276.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 702

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
          L      ++ +A        V A AG+GKT  +  R+   +L     P  +L +T T  A
Sbjct: 7  LAGLDPEQRAVAEAVRGPVCVLAGAGTGKTRAITHRIAYAVLTGVVAPQRVLAVTFTTRA 66

Query: 75 AAEMSHRVLEI 85
          A E+  R+ ++
Sbjct: 67 AGELRGRLRQL 77


>gi|260753941|ref|YP_003226834.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258553304|gb|ACV76250.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 1047

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 44/194 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           L +    ++  A    ++  V A  GSGKT +L QR+  L+   A P    L LT T+ A
Sbjct: 476 LSTLDSDQKAAALITDKALMVLAGPGSGKTKMLTQRIAHLIQEKAIPAEKCLLLTFTRRA 535

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E+  RV +++                                     I+ +       
Sbjct: 536 TDELKARVKQLLPETESPP------------------------------IIHS------- 558

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
             H+    ++++      + + F I D +  KK   E     ++++     +E  + F  
Sbjct: 559 -FHSLALDMLKKDSKAFGLAADFRIVDPQSLKKAFME-----MSNLSSKRADEALERFSL 612

Query: 195 ILEISNDEDIETLI 208
           +       D+E  I
Sbjct: 613 LKRSGEVGDLEEEI 626


>gi|170765721|ref|ZP_02900532.1| exodeoxyribonuclease V, beta subunit [Escherichia albertii TW07627]
 gi|170124867|gb|EDS93798.1| exodeoxyribonuclease V, beta subunit [Escherichia albertii TW07627]
          Length = 1180

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 19/187 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA AE+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79

Query: 86  ITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I         E     +     ++ +  D ++A   L+          V TIH FC+ ++
Sbjct: 80  IHELRIACLRETTDNPLYARLLEEID--DKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ +     + ++E    L  +               E+ +  +E       +  
Sbjct: 138 NLNAFESGMLFEQQLIEDE--SLLRYQGCADFWRRHCYPLPREIAQVVFE-----TWKGP 190

Query: 205 ETLISDI 211
           + L+ DI
Sbjct: 191 QALLRDI 197


>gi|330010295|ref|ZP_08306722.1| helicase IV [Klebsiella sp. MS 92-3]
 gi|328534585|gb|EGF61165.1| helicase IV [Klebsiella sp. MS 92-3]
          Length = 684

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              ++E  ++++      S+     +  RS  V A AGSGKT +LV R   LL    A  
Sbjct: 182 LEQYREFFDSVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAAA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM  R+ E + +    +    S  +  IQ        +SK
Sbjct: 242 DQILLLAFGRQAAQEMDERIRERLASDDITARTFHSLALHIIQQGSKKVPTISK 295


>gi|170769313|ref|ZP_02903766.1| helicase IV [Escherichia albertii TW07627]
 gi|170121965|gb|EDS90896.1| helicase IV [Escherichia albertii TW07627]
          Length = 714

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
            N   +    ++      ++     +   +  V A AGSGKT +LV R   LL    A P
Sbjct: 212 LNEHADFFRQVESSPLNPAQARAVVNGEHALLVLAGAGSGKTSVLVARAGWLLARGEASP 271

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 272 EQILLLAFGRKAAEEMDDRIRERLHTDDITARTFHSLALHIIQQGSKKVPTVSK 325


>gi|62181502|ref|YP_217919.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129135|gb|AAX66838.1| exonuclease V, beta chain [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715985|gb|EFZ07556.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 1181

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLSVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 896

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 50/213 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           DL +  K +  +         V A+ G GKTHIL +R+            +LCLT T  A
Sbjct: 6   DLPALDKYQLSVVEAGHGHHLVLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM++R+ +++                                            L V 
Sbjct: 66  AREMTNRIQKVVGG--------------------------------------DFSDLMVG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            +H FC   +     +  I +  AI D+E++  +I + +         ++ E + + F  
Sbjct: 88  NVHRFCSKFL---FEQKQIPADSAIIDDEEAVSIIADYRN--------EDEEGVTRDFSR 136

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
                     +  I  +  +R   K      S+
Sbjct: 137 YKGYQTIIFFQHFIYQM-EHRHPWKYYLHPESF 168


>gi|241761575|ref|ZP_04759662.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373883|gb|EER63416.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 1047

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 62/237 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           L +    ++  A    ++  V A  GSGKT +L QR+  L+   A P    L LT T+ A
Sbjct: 476 LSTLDSDQKAAALITDKALMVLAGPGSGKTKMLTQRIAHLIQKKAIPAEKCLLLTFTRRA 535

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E+  RV +++                                     I+ +       
Sbjct: 536 TDELKARVKQLLPETESPP------------------------------IIHS------- 558

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-------KKSTLA--------- 178
             H+    ++++      + + F I D +  KK   E            L          
Sbjct: 559 -FHSLALDMLKKDSKAFGLAADFRIVDPQSLKKAFMEMSNLSSKRADEALERFSLLKKSG 617

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDII-------SNRTALKLIFFFFSYL 228
            +     E L+++   + + ++  D + L+  ++       S R      F F S  
Sbjct: 618 EVGDLEEEILRQSLENLKQDNHWLDFDDLLIKVVNGLENNASLREKWATAFSFLSVD 674


>gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 50/213 (23%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           DL +  K +  +         V A+ G GKTHIL +R+            +LCLT T  A
Sbjct: 6   DLPALDKYQLSVVEAGHGHHLVLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM++R+ +++                                            L V 
Sbjct: 66  AREMTNRIQKVVGG--------------------------------------DFSDLMVG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            +H FC   +     +  I +  AI D+E++  +I + +         ++ E + + F  
Sbjct: 88  NVHRFCSKFL---FEQKQIPADSAIIDDEEAVSIIADYRN--------EDEEGVTRDFSR 136

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
                     +  I  +  +R   K      S+
Sbjct: 137 YKGYQTIIFFQHFIYQM-EHRHPWKYYLHPESF 168


>gi|238894018|ref|YP_002918752.1| DNA helicase IV [Klebsiella pneumoniae NTUH-K2044]
 gi|238546334|dbj|BAH62685.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 684

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              ++E  ++++      S+     +  RS  V A AGSGKT +LV R   LL    A  
Sbjct: 182 LEQYREFFDSVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAAA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM  R+ E + +    +    S  +  IQ        +SK
Sbjct: 242 DQILLLAFGRQAAQEMDERIRERLASDDITARTFHSLALHIIQQGSKKVPTISK 295


>gi|121613648|ref|YP_001000466.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 81-176]
 gi|87249507|gb|EAQ72467.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 81-176]
          Length = 676

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L      + L A+       V A+AG+GKT  +V R+  LL     P  ++ LT T  
Sbjct: 1  MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNK 60

Query: 74 AAAEMSHRVLE 84
          A+ EM  R+ +
Sbjct: 61 ASKEMIGRLGK 71


>gi|241668124|ref|ZP_04755702.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 1191

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 21/178 (11%)

Query: 35  WVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  +    +R LL     P  +L +T TK A  E+  RV   I       
Sbjct: 16  IIEASAGTGKTFNITTLYIRLLLEKKLLPKDILVMTFTKDATQEIIGRVEAKIR------ 69

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D +   +  K      +   + +A       L       + TIH FC+ ++ +    + +
Sbjct: 70  DVLADHKSCKEVLSDEDYKHIKRA-------LLEVDEAAIFTIHGFCKKVLSEQAFASGM 122

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
                ++ E  +  ++++  +      +  N        +E L+       E  + ++
Sbjct: 123 --EMDVSMEVDTSDILQKVVEDFFRKHINKNKTN-----FEYLQAYKLHTPEKFLDNL 173


>gi|119357210|ref|YP_911854.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354559|gb|ABL65430.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium
           phaeobacteroides DSM 266]
          Length = 1221

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAW--SH 91
            + A+AG+GKT  +    LRLLL     P  +L +T+T+AA  E+  R+   I     + 
Sbjct: 18  LIEASAGTGKTWAITSLYLRLLLEKELRPEQILVVTYTEAATRELHARIRRRIRQALDAM 77

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
             D    A +  +  +     +  +A  LL   L       + TIH FC   +Q    E+
Sbjct: 78  RGDPTDDAFLVGLCERAAEAGEEERAALLLEAALAEFDTASIFTIHGFCNRALQDHAFES 137

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
                  +        L  E            + ++L    Y +L+  + +     +  +
Sbjct: 138 GALYDTELV--TDQSALAREVIDDFWRERFFGSADQLLG--YALLKGWSPDAFMAFLKSL 193

Query: 212 -ISNRTALKLIF 222
            +S R  +  ++
Sbjct: 194 QLSGRDEVIPVY 205


>gi|57237622|ref|YP_178870.1| putative ATP-dependent DNA helicase [Campylobacter jejuni RM1221]
 gi|86153455|ref|ZP_01071659.1| atp-dependent helicase [Campylobacter jejuni subsp. jejuni
          HB93-13]
 gi|57166426|gb|AAW35205.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni
          RM1221]
 gi|85843181|gb|EAQ60392.1| atp-dependent helicase [Campylobacter jejuni subsp. jejuni
          HB93-13]
 gi|315058231|gb|ADT72560.1| ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial
          type 1 [Campylobacter jejuni subsp. jejuni S3]
          Length = 676

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L      + L A+       V A+AG+GKT  +V R+  LL     P  ++ LT T  
Sbjct: 1  MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNK 60

Query: 74 AAAEMSHRVLE 84
          A+ EM  R+ +
Sbjct: 61 ASKEMIGRLGK 71


>gi|311898266|dbj|BAJ30674.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
          Length = 766

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L      ++ +A+       V A AG+GKT  +  R+   + +    P+ +L +T T  A
Sbjct: 29  LAGLDPEQRAVATALHGPVCVLAGAGTGKTRAITHRIAYGVRSGVYQPAQVLAVTFTARA 88

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
           A EM  R+ + + A    +    SA + ++Q   P
Sbjct: 89  AGEMRGRLRQ-LGADGVQARTFHSAALRQLQYFWP 122


>gi|315656454|ref|ZP_07909343.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315493013|gb|EFU82615.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 519

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
            ++ +D + + + E  +A     +  V A AG+GKT  +  R+   + +   +P  +L 
Sbjct: 15 SAAQLLDDLDEQQRE--VAQHQHGALCVLAGAGTGKTRAITYRIAYGVRSGQVNPENVLA 72

Query: 68 LTHTKAAAAEMSHRVL 83
          LT T+ AAAEM  R+ 
Sbjct: 73 LTFTQKAAAEMKTRLE 88


>gi|224538975|ref|ZP_03679514.1| hypothetical protein BACCELL_03872 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519421|gb|EEF88526.1| hypothetical protein BACCELL_03872 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1624

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 40/138 (28%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
            Q++++    +S+ + E +++   +R   V+A  GSGKT +LV ++  LLL  +     LL
Sbjct: 1064 QKYNQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1122

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             LT ++AAA E   R++E+I   +H  +                                
Sbjct: 1123 MLTFSRAAATEFKQRLMELIGNAAHFVE-------------------------------- 1150

Query: 127  TPGGLKVQTIHAFCEAIM 144
                  ++T H++C  ++
Sbjct: 1151 ------IKTFHSYCFDLL 1162


>gi|148926945|ref|ZP_01810622.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni CG8486]
 gi|145845029|gb|EDK22126.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni CG8486]
          Length = 676

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L      + L A+       V A+AG+GKT  +V R+  LL     P  ++ LT T  
Sbjct: 1  MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNK 60

Query: 74 AAAEMSHRVLE 84
          A+ EM  R+ +
Sbjct: 61 ASKEMIGRLGK 71


>gi|86150141|ref|ZP_01068368.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni CF93-6]
 gi|86152070|ref|ZP_01070282.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 260.94]
 gi|88597504|ref|ZP_01100738.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 84-25]
 gi|218562405|ref|YP_002344184.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni NCTC 11168]
 gi|315124301|ref|YP_004066305.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni ICDCCJ07001]
 gi|85839257|gb|EAQ56519.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni CF93-6]
 gi|85840855|gb|EAQ58105.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 260.94]
 gi|88190096|gb|EAQ94071.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 84-25]
 gi|112360111|emb|CAL34905.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni NCTC 11168]
 gi|284926023|gb|ADC28375.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni IA3902]
 gi|315018023|gb|ADT66116.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni ICDCCJ07001]
 gi|315928295|gb|EFV07611.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
          jejuni DFVF1099]
          Length = 676

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L      + L A+       V A+AG+GKT  +V R+  LL     P  ++ LT T  
Sbjct: 1  MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNK 60

Query: 74 AAAEMSHRVLE 84
          A+ EM  R+ +
Sbjct: 61 ASKEMIGRLGK 71


>gi|291550034|emb|CBL26296.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14]
          Length = 609

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +   +++            V A  GSGKT  +V RV  L+      P  +L +T T+ AA
Sbjct: 1  MGFNEAQTQAIQHTDGPCLVLAGPGSGKTLTIVNRVKYLIEKQKVRPEEILVVTFTRFAA 60

Query: 76 AEMSHRV 82
          AEM  R+
Sbjct: 61 AEMKSRL 67


>gi|283957241|ref|ZP_06374702.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 1336]
 gi|283791253|gb|EFC30061.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 1336]
          Length = 676

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L      + L A+       V A+AG+GKT  +V R+  LL     P  ++ LT T  
Sbjct: 1  MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNK 60

Query: 74 AAAEMSHRVLE 84
          A+ EM  R+ +
Sbjct: 61 ASKEMIGRLGK 71


>gi|237807954|ref|YP_002892394.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237500215|gb|ACQ92808.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 1013

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           +    +TI+    ++ ++           V A AG+GKT  ++ +   LL +  A P  +
Sbjct: 201 YGSFFDTIESQPLSQPQRQACVTEEDHTLVVAGAGTGKTSTIIGKAGYLLHSGLAEPDNI 260

Query: 66  LCLTHTKAAAAEMSHRVLEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           L L     AA EM+ R+   +        +       +  + +IQGKKP  +  ++ +  
Sbjct: 261 LLLAFGNKAAGEMTERIALRLPEAHARIRATTFHAFGNQIMAEIQGKKPTLTRFAEQKEE 320

Query: 121 LITILETPGGLKV 133
           L   +ET    ++
Sbjct: 321 LRKFIETVMEQQI 333


>gi|270261242|ref|ZP_06189515.1| hypothetical protein SOD_a04670 [Serratia odorifera 4Rx13]
 gi|270044726|gb|EFA17817.1| hypothetical protein SOD_a04670 [Serratia odorifera 4Rx13]
          Length = 684

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP 62
             ++ +  +TI+      S+     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LETYHDFFQTIESSPLNDSQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRQEAEP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM+ R+ E + + +  +    +  +  IQ        +SK
Sbjct: 242 GQILLLAFGRQAAEEMNERIQERLGSVAIQAKTFHALALQIIQQGNRKVPAISK 295


>gi|325846882|ref|ZP_08169739.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481124|gb|EGC84168.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 860

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 34/129 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
            K + L+  D    A V A  G+GKT  +VQ+++ L+      P+ +L  T TK AA E+
Sbjct: 3   NKKQNLIVDDSKYPAAVLAGPGTGKTFTIVQKIISLIKNEGLSPNKILVTTFTKKAANEL 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +   +  +D                                    + +   H+
Sbjct: 63  IERVESGLKKENIKADT---------------------------------SNMLIGNFHS 89

Query: 139 FCEAIMQQF 147
              + ++++
Sbjct: 90  LALSFLKEY 98


>gi|146329276|ref|YP_001209300.1| DNA helicase UvrD [Dichelobacter nodosus VCS1703A]
 gi|146232746|gb|ABQ13724.1| DNA helicase UvrD [Dichelobacter nodosus VCS1703A]
          Length = 664

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 40/159 (25%)

Query: 16  LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           +  Q   +Q  A         V A AGSGKT ++ +++  L+ + +     +  +T T  
Sbjct: 1   MFDQLNPQQRAAVLYLDSPLLVIAGAGSGKTGVITEKIAYLIESAHYDAPNVCAVTFTNK 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA EM  R    +   +H                                      GL +
Sbjct: 61  AAREMLARSRARLKKRAH--------------------------------------GLTI 82

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            T H     ++++   +AN    F+I D+  S  L+ E 
Sbjct: 83  ATFHRLGLMMLERDFAKANRRRGFSIFDQHDSLTLLREL 121


>gi|329939646|ref|ZP_08288947.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301216|gb|EGG45111.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 1158

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +    T    V A  G+GKT  LV+ V   +     P  +L LT ++ AA E+  R
Sbjct: 41  AQRAVVDHRTGPLLVLAGPGTGKTTTLVESVAARIARGTDPERILVLTFSRRAAVELRDR 100

Query: 82  VLEIITA 88
           +   I A
Sbjct: 101 LALRIGA 107


>gi|317508125|ref|ZP_07965808.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316253536|gb|EFV12923.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 548

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            + ++ +   P     V A AGSGKT +L +R+  L+ +    P  +L ++ T  AA E+
Sbjct: 84  DERQRAVVVAPRGPVRVVAGAGSGKTRVLTRRIAHLVASGQVRPKEVLAVSFTVRAAGEL 143

Query: 79  SHRV 82
             R+
Sbjct: 144 RDRL 147


>gi|110598179|ref|ZP_01386456.1| exodeoxyribonuclease V, beta subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110340193|gb|EAT58691.1| exodeoxyribonuclease V, beta subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 1206

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 10/159 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +    LRLLL +   P  +L +T+T+AA  E+  R+   I     + 
Sbjct: 18  LIEASAGTGKTYAIASLYLRLLLESGLLPEQILVVTYTEAATQELRSRIRSRIREALDVL 77

Query: 94  DEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +   + +        +  ++   + + +L   L       + TIH F    +Q+   E+ 
Sbjct: 78  EGAGTGDPFLTELSTRAREAGTGREKGVLEQALAAFDTAAIFTIHGFSLRALQENAFESG 137

Query: 153 ITSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEEL 188
                ++ D E      +L+ E            +  +L
Sbjct: 138 -----SLYDTELVTDESELLREIVDDFWRHHFFSDTPDL 171


>gi|27817688|emb|CAD61115.1| hypothetical protein [Cupriavidus oxalaticus]
          Length = 599

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 44/164 (26%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
                EQ  A     S ++ A  GSGKT  L  ++   L    ++   ++ +T+T  AA 
Sbjct: 7   DDLNPEQEAAILEPGSVFLIACPGSGKTRTLTYKIAYELSRLKSNKQFVVAITYTHRAAD 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+  +    S                                        L + TI
Sbjct: 67  EIHERIEGLGVDTS---------------------------------------RLWIGTI 87

Query: 137 HAFCE-AIMQQF--PLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           H+FC   I++ +    EA +   + + D+ + +K++E   K  L
Sbjct: 88  HSFCLEWILKPYGIYHEA-LERGYRVIDQHEREKILEALCKPYL 130


>gi|225570440|ref|ZP_03779465.1| hypothetical protein CLOHYLEM_06540 [Clostridium hylemonae DSM
           15053]
 gi|225160637|gb|EEG73256.1| hypothetical protein CLOHYLEM_06540 [Clostridium hylemonae DSM
           15053]
          Length = 613

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 48/221 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +    ++    +       V A  GSGKT  + +R+  L+  +   P  +L +T TK AA
Sbjct: 1   MGLNSAQSKAVAHHDGPCMVLAGPGSGKTLTIAKRIEYLIRKHKVRPEEILVITFTKYAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R                                        + +++ P  +   T
Sbjct: 61  NEMKSR---------------------------------------FLAVMKEPLAVTFGT 81

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE--LKKAFY 193
            H     I++       I     + +EE+   L + A  S     + +  E+  LK+   
Sbjct: 82  FHGIYYGILK---WAYGIGQSNLLTEEERYNLLRQIASASHTDEALTEEEEKDYLKELAA 138

Query: 194 EILEISNDE-DIETLISDIISNRTALKLIFFFFSYLWRRKI 233
           EI +I ND  DI    S+        + I+  +    ++K 
Sbjct: 139 EIGKIKNDRLDIRAYESERFGK-ERFQSIYRDYEDA-KKKW 177


>gi|320451177|ref|YP_004203273.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01]
 gi|320151346|gb|ADW22724.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01]
          Length = 872

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 67/197 (34%), Gaps = 31/197 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
              A+AG+GKTH LV  +L LL        +  +T T+ AA E+  R+   +   S  S 
Sbjct: 3   LYVASAGTGKTHALVGELLALLRQGVPLRRMAAVTFTRKAAEELRRRIQGEVIRLSSASW 62

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
              +                   R +   +          TIH F    ++      ++ 
Sbjct: 63  AEEA------------------QREVYGAVF--------TTIHGFMAEAIRHTAPLLSLD 96

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
             FA+ DE  ++ L  E  +S L    LD   E       +L +     +      +   
Sbjct: 97  PDFALLDELLAEALFLEEARSLLYLKGLDPALEG-----SLLALYRKRSLAGAFRALPGA 151

Query: 215 RTALKLIFFFFSYLWRR 231
              L+L     S   RR
Sbjct: 152 EGLLELFQEVLSGYHRR 168


>gi|168236044|ref|ZP_02661102.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736312|ref|YP_002115943.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194711814|gb|ACF91035.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290868|gb|EDY30222.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 1181

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|289825128|ref|ZP_06544463.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 547

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|167762567|ref|ZP_02434694.1| hypothetical protein BACSTE_00923 [Bacteroides stercoris ATCC 43183]
 gi|167699673|gb|EDS16252.1| hypothetical protein BACSTE_00923 [Bacteroides stercoris ATCC 43183]
          Length = 1602

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 55/216 (25%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
            Q++ +    +S+ + E +++   +R   V+A  GSGKT +LV ++  LLL  +     LL
Sbjct: 1042 QKYKQLFGQLSKRQME-IISDKESRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1100

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             LT ++AAA E   R++E+I   +H  +                                
Sbjct: 1101 MLTFSRAAATEFKQRLMELIGNATHFIE-------------------------------- 1128

Query: 127  TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                  ++T H++C  ++              I + E +K ++ +A K  + +       
Sbjct: 1129 ------IKTFHSYCFDLLG------------RIGNLEDAKDIVSKAAK--MINQGEVEPT 1168

Query: 187  ELKKAFYEILEISNDEDIE-TLISDIISNRTALKLI 221
            ++ K    I E  +    E  L++ +I+N   +++I
Sbjct: 1169 KIGKTVLVIDEAQDMGKEEYDLVNALIANNEEMRVI 1204


>gi|118467867|ref|YP_885717.1| exodeoxyribonuclease V subunit beta [Mycobacterium smegmatis str.
           MC2 155]
 gi|5678922|gb|AAD46808.1|AF157643_2 RecB [Mycobacterium smegmatis]
 gi|118169154|gb|ABK70050.1| exodeoxyribonuclease V, beta subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 1083

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 5/172 (2%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A+AG+GKT  L   V R +         +L +T  +AA+ E+  RV   I A
Sbjct: 13  PNTTTVLEASAGTGKTFALAGLVTRFVAEGVATLDQMLLITFGRAASQELRERVRAQIVA 72

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                D+   A       +   K+D    R  L   L       + T H FC+ +++   
Sbjct: 73  ALVALDDPSRA--CNDLEEYLVKTDQQARRRRLRDALAGFDAATIATTHQFCQIVLKSLG 130

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           +  +  +   + +      L+ E       +      ++ + ++ E L+++ 
Sbjct: 131 VAGDSDAGVTLVESLD--DLVSEIVDDLYLAHFGGQKDDPELSYPEALKLAR 180


>gi|72160934|ref|YP_288591.1| superfamily I DNA/RNA helicase [Thermobifida fusca YX]
 gi|71914666|gb|AAZ54568.1| superfamily I DNA and RNA helicases [Thermobifida fusca YX]
          Length = 712

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
          E +  +   + E + A        + A AG+GKT  +  R+   +     P   +L +T 
Sbjct: 18 EILRGLDPEQEEAVRAV--RGPVCILAGAGTGKTRAITHRIAYAVATGVVPEQQILAVTF 75

Query: 71 TKAAAAEMSHRVLEI 85
          T  AA EM  R+  +
Sbjct: 76 TTRAAGEMRGRLRAL 90


>gi|154492504|ref|ZP_02032130.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184]
 gi|154087729|gb|EDN86774.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184]
          Length = 1619

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 40/134 (29%)

Query: 12   ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
              +  +S+T+ E ++  D   S  V A  GSGKT +LV ++  LLL  +     LL LT 
Sbjct: 1044 RLLGKLSETQLE-IVKDDRPGSIVVMAGPGSGKTRVLVHKLAYLLLEEDVKHEQLLMLTF 1102

Query: 71   TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            ++AAA+E   R+ ++I   +                                      G 
Sbjct: 1103 SRAAASEFRRRLWDLIGTAA--------------------------------------GY 1124

Query: 131  LKVQTIHAFCEAIM 144
            ++++T H++C  ++
Sbjct: 1125 VEIKTFHSYCFDLL 1138


>gi|157377373|ref|YP_001475973.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
 gi|157319747|gb|ABV38845.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
          Length = 907

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 3   YHNSFQEHSE--TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN 59
           + N F+       ++  +  ++EQ+ A +       V A AGSGKT  +V+RV  LL   
Sbjct: 434 HLNKFELEPSVTMLEDSAVAQAEQMKAVEAEARVLAVIAGAGSGKTRTIVERVKYLLGEG 493

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLE 84
            HPS +  L +T  AA+E+S R+  
Sbjct: 494 RHPSRIKVLAYTNDAASEISRRIGS 518


>gi|326905148|gb|EGE52081.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis W-148]
          Length = 1094

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKS-- 131

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 132 --LG------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 896

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 41/151 (27%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++   S    
Sbjct: 26  LVLASPGCGKTHILAERIRYAREKGVRYEDMLCLTFTNRAAREMTNRIQKVVGGDST--- 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                               L V  +H FC   +     E  I 
Sbjct: 83  -----------------------------------ELMVGNVHRFCSKFL---FEEDKIP 104

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           +  AI D+E++  +I + +      +  D N
Sbjct: 105 ADSAIIDDEEAVSIIADYRNEDEEGVTRDFN 135


>gi|168820281|ref|ZP_02832281.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205342959|gb|EDZ29723.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087418|emb|CBY97183.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|315929648|gb|EFV08828.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
          jejuni 305]
          Length = 387

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L      + L A+       V A+AG+GKT  +V R+  LL     P  ++ LT T  
Sbjct: 1  MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNK 60

Query: 74 AAAEMSHRVLE 84
          A+ EM  R+ +
Sbjct: 61 ASKEMIGRLGK 71


>gi|119714519|ref|YP_921484.1| exodeoxyribonuclease V, beta subunit [Nocardioides sp. JS614]
 gi|119535180|gb|ABL79797.1| exodeoxyribonuclease V, beta subunit [Nocardioides sp. JS614]
          Length = 1111

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 63/180 (35%), Gaps = 21/180 (11%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A+AG+GKT  +   + R +    A    LL +T  +AA+ E+  RV   +  
Sbjct: 14  PAGTVLLEASAGTGKTWTIGALLTRYVAEGVARLDQLLVVTFGRAASQELRERVRAQLVE 73

Query: 89  WSHLSDEILSAEITKIQGKKP--------------NKSDMSKARHLLITILETPGGLKVQ 134
              +  +   A  +   G                    +  +    +   L       + 
Sbjct: 74  AERVLGDDPVAGDSGDPGDPGDPGDSELVTLLRSWGADERRRGHRRVTEALAGFDAATIA 133

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H FC  ++    +  +  S   + ++      +++  K T+  + L    + + AF  
Sbjct: 134 TTHQFCSMVLDSLGVAGDTDSRARLVED------LDDLVKETVDDLYLRAFADAEPAFTH 187


>gi|308376460|ref|ZP_07438909.2| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu008]
 gi|308351040|gb|EFP39891.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu008]
          Length = 1106

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 26  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 85

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 86  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLG 145

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 146 ----------VAGDNAADVELKESLTDLVTEIVDDRY 172


>gi|215402402|ref|ZP_03414583.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           02_1987]
 gi|289744345|ref|ZP_06503723.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           02_1987]
 gi|289684873|gb|EFD52361.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           02_1987]
          Length = 1094

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLG 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 134 ----------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|260185509|ref|ZP_05762983.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A]
 gi|260203798|ref|ZP_05771289.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85]
 gi|289446185|ref|ZP_06435929.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A]
 gi|289573232|ref|ZP_06453459.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85]
 gi|289419143|gb|EFD16344.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A]
 gi|289537663|gb|EFD42241.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85]
          Length = 1094

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLG 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 134 ----------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|212696674|ref|ZP_03304802.1| hypothetical protein ANHYDRO_01215 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676405|gb|EEB36012.1| hypothetical protein ANHYDRO_01215 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 860

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 34/152 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
            + + L+ +D    A V A  G+GKT  +VQ+++ L+      P+ +L  T TK AA E+
Sbjct: 3   NEKQNLIVNDSKYPAAVLAGPGTGKTFTIVQKIISLIKNEGLSPNKILVTTFTKKAANEL 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +   +  +D                                    + +   H+
Sbjct: 63  IERVESGLKKENIKADT---------------------------------SNMLIGNFHS 89

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
              + ++++    N      + D      L+E
Sbjct: 90  LALSFLKEYRAFTNKIFDPFVIDSNIEGYLLE 121


>gi|15607770|ref|NP_215144.1| exonuclease V beta chain [Mycobacterium tuberculosis H37Rv]
 gi|15840031|ref|NP_335068.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|148660402|ref|YP_001281925.1| exodeoxyribonuclease V subunit beta [Mycobacterium tuberculosis
           H37Ra]
 gi|148821832|ref|YP_001286586.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis F11]
 gi|167969058|ref|ZP_02551335.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis H37Ra]
 gi|215444746|ref|ZP_03431498.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T85]
 gi|253797568|ref|YP_003030569.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           1435]
 gi|289552882|ref|ZP_06442092.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           605]
 gi|289756711|ref|ZP_06516089.1| exonuclease subunit V beta [Mycobacterium tuberculosis T85]
 gi|294996146|ref|ZP_06801837.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis 210]
 gi|297633126|ref|ZP_06950906.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           4207]
 gi|297730106|ref|ZP_06959224.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           R506]
 gi|306774738|ref|ZP_07413075.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu001]
 gi|306781532|ref|ZP_07419869.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu002]
 gi|306783276|ref|ZP_07421598.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu003]
 gi|306787645|ref|ZP_07425967.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu004]
 gi|306794411|ref|ZP_07432713.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu005]
 gi|306796381|ref|ZP_07434683.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu006]
 gi|306806449|ref|ZP_07443117.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu007]
 gi|306966649|ref|ZP_07479310.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu009]
 gi|306970842|ref|ZP_07483503.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu010]
 gi|307078566|ref|ZP_07487736.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu011]
 gi|313657433|ref|ZP_07814313.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           V2475]
 gi|8134453|sp|P96920|EX5B_MYCTU RecName: Full=Exodeoxyribonuclease V beta chain
 gi|1877367|emb|CAB07119.1| PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V
           BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE)
           (CHI-SPECIFIC ENDONUCLEASE) [Mycobacterium tuberculosis
           H37Rv]
 gi|13880176|gb|AAK44882.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|148504554|gb|ABQ72363.1| exodeoxyribonuclease V subunit beta [Mycobacterium tuberculosis
           H37Ra]
 gi|148720359|gb|ABR04984.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis F11]
 gi|253319071|gb|ACT23674.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           1435]
 gi|289437514|gb|EFD20007.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           605]
 gi|289712275|gb|EFD76287.1| exonuclease subunit V beta [Mycobacterium tuberculosis T85]
 gi|308216631|gb|EFO76030.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu001]
 gi|308325701|gb|EFP14552.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu002]
 gi|308331937|gb|EFP20788.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu003]
 gi|308335722|gb|EFP24573.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu004]
 gi|308337301|gb|EFP26152.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu005]
 gi|308343158|gb|EFP32009.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu006]
 gi|308347097|gb|EFP35948.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu007]
 gi|308355672|gb|EFP44523.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu009]
 gi|308359627|gb|EFP48478.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu010]
 gi|308363506|gb|EFP52357.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu011]
 gi|323720985|gb|EGB30050.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           CDC1551A]
 gi|328457349|gb|AEB02772.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           4207]
          Length = 1094

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLG 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 134 ----------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|215429463|ref|ZP_03427382.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis EAS054]
 gi|260199635|ref|ZP_05767126.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T46]
 gi|289442022|ref|ZP_06431766.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
           T46]
 gi|289752672|ref|ZP_06512050.1| exonuclease subunit V beta [Mycobacterium tuberculosis EAS054]
 gi|289414941|gb|EFD12181.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
           T46]
 gi|289693259|gb|EFD60688.1| exonuclease subunit V beta [Mycobacterium tuberculosis EAS054]
          Length = 1094

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLG 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 134 ----------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|194444795|ref|YP_002042242.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403458|gb|ACF63680.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|261822106|ref|YP_003260212.1| DNA helicase IV [Pectobacterium wasabiae WPP163]
 gi|261606119|gb|ACX88605.1| UvrD/REP helicase [Pectobacterium wasabiae WPP163]
          Length = 685

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
           + Q   ET++      S+     +      V A AGSGKT +LV R   L+    A P  
Sbjct: 184 AEQPFFETVESSPLNVSQSKTVINGEEGVLVLAGAGSGKTSVLVARAAWLMHRQEAAPDQ 243

Query: 65  LLCLTHTKAAAAEMSHRVLEII-------TAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           +L L   + AA EM+ R+LE +         +  L+  I+     K       +SD  + 
Sbjct: 244 ILLLAFGRKAAEEMNERILERLNTDEIQAKTFHALALHIIQQASRKAPMISQLESDAKQR 303

Query: 118 RHLLIT 123
           R LLI+
Sbjct: 304 RELLIS 309


>gi|238909771|ref|ZP_04653608.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|200389247|ref|ZP_03215859.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199606345|gb|EDZ04890.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|56414941|ref|YP_152016.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363869|ref|YP_002143506.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129198|gb|AAV78704.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095346|emb|CAR60904.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|16766296|ref|NP_461911.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993491|ref|ZP_02574585.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16421543|gb|AAL21870.1| exonuclease V, beta chain [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205328446|gb|EDZ15210.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248128|emb|CBG25963.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995133|gb|ACY90018.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159552|emb|CBW19071.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914013|dbj|BAJ37987.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|323131350|gb|ADX18780.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|317496982|ref|ZP_07955312.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895994|gb|EFV18146.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 620

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
          K+++           V A  GSGKT ++ +R+  L+      P  +L +T T+AAA EM 
Sbjct: 7  KAQKEAVMHKDGPMMVLAGPGSGKTLVITKRIQYLISHYQIPPQRILVITFTRAAANEMK 66

Query: 80 HRVLEIITA 88
           R   +   
Sbjct: 67 ERFWRLAGE 75


>gi|168231088|ref|ZP_02656146.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194468697|ref|ZP_03074681.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455061|gb|EDX43900.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334551|gb|EDZ21315.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|197264911|ref|ZP_03164985.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243166|gb|EDY25786.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|87300614|ref|ZP_01083456.1| ATP-depentend DNA helicase [Synechococcus sp. WH 5701]
 gi|87284485|gb|EAQ76437.1| ATP-depentend DNA helicase [Synechococcus sp. WH 5701]
          Length = 602

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 40/196 (20%)

Query: 48  LVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
           L  R+ RLL   A     +L +T T  AA EM  R+  ++                    
Sbjct: 2   LTYRIARLLNDTAGERFRILGVTFTNKAAGEMRSRLEGLL-------------------- 41

Query: 107 KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
                 D+SK R LL             T H+F   I++Q      +   F I  E+  +
Sbjct: 42  ------DVSKDRALL------------TTFHSFAAEILRQHGHYIGLRPDFTILVEQADR 83

Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFS 226
           + +       L+  + D       A   I ++  +      +++ +      + +   F+
Sbjct: 84  EAVATEAMKMLSEDVADTIPGASNALPLIDKMLAECSNPEELAERLGEHKHKEFLSQLFN 143

Query: 227 YLWRRKIIEKSLWSIA 242
             +R K+I+ +    A
Sbjct: 144 -AYRSKLIKGNHLDFA 158


>gi|168463851|ref|ZP_02697768.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633206|gb|EDX51620.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|161615928|ref|YP_001589893.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365292|gb|ABX69060.1| hypothetical protein SPAB_03725 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|168242761|ref|ZP_02667693.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447882|ref|YP_002046963.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194406186|gb|ACF66405.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205338102|gb|EDZ24866.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|204928170|ref|ZP_03219370.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322492|gb|EDZ07689.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322613394|gb|EFY10335.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322639429|gb|EFY36117.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322655186|gb|EFY51496.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322664085|gb|EFY60284.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322673102|gb|EFY69209.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677907|gb|EFY73970.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681082|gb|EFY77115.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685678|gb|EFY81672.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323244617|gb|EGA28623.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|16761770|ref|NP_457387.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143254|ref|NP_806596.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|168261856|ref|ZP_02683829.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|25289143|pir||AB0865 exonuclease V chain [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504072|emb|CAD02818.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138887|gb|AAO70456.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|205349278|gb|EDZ35909.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 1181

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|213649043|ref|ZP_03379096.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 1104

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|325264991|ref|ZP_08131718.1| putative ATP-dependent helicase PcrA [Clostridium sp. D5]
 gi|324029681|gb|EGB90969.1| putative ATP-dependent helicase PcrA [Clostridium sp. D5]
          Length = 612

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +S +K+++   +       V A  GSGKT  +V R+  L+      P  +L +T TK AA
Sbjct: 1  MSFSKAQEDAVTHGKGPCLVLAGPGSGKTLTIVNRMKYLIEELKVRPEEILVITFTKYAA 60

Query: 76 AEMSHRVLEIIT 87
           EM +R L+++ 
Sbjct: 61 TEMKNRFLQLMG 72


>gi|167766292|ref|ZP_02438345.1| hypothetical protein CLOSS21_00796 [Clostridium sp. SS2/1]
 gi|167712011|gb|EDS22590.1| hypothetical protein CLOSS21_00796 [Clostridium sp. SS2/1]
          Length = 620

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
          K+++           V A  GSGKT ++ +R+  L+      P  +L +T T+AAA EM 
Sbjct: 7  KAQKEAVMHKDGPMMVLAGPGSGKTLVITKRIQYLISHYQIPPQRILVITFTRAAANEMK 66

Query: 80 HRVLEIITA 88
           R   +   
Sbjct: 67 ERFWRLAGE 75


>gi|153951004|ref|YP_001398295.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          doylei 269.97]
 gi|152938450|gb|ABS43191.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          doylei 269.97]
          Length = 676

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L      + L A+       V A+AG+GKT  +V R+  LL     P  ++ LT T  
Sbjct: 1  MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVTPQKIMLLTFTNK 60

Query: 74 AAAEMSHRVLE 84
          A+ EM  R+ +
Sbjct: 61 ASKEMIGRLGK 71


>gi|238917159|ref|YP_002930676.1| hypothetical protein EUBELI_01231 [Eubacterium eligens ATCC
          27750]
 gi|238872519|gb|ACR72229.1| Hypothetical protein EUBELI_01231 [Eubacterium eligens ATCC
          27750]
          Length = 621

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          + L+   +++            V A  GSGKT +L  RV  L+     +PS +L +T TK
Sbjct: 1  MPLLQFNEAQIQAIQHNKGPCMVIAGPGSGKTTVLTHRVRYLIDRCGVNPSDILVITFTK 60

Query: 73 AAAAEMS 79
          AAA +M 
Sbjct: 61 AAAEQMK 67


>gi|197250871|ref|YP_002147902.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197214574|gb|ACH51971.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 1181

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|320353212|ref|YP_004194551.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
 gi|320121714|gb|ADW17260.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
          Length = 1095

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 53/156 (33%), Gaps = 48/156 (30%)

Query: 18  SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +    EQ  A D       V A  G+GKTH LV RV R    +  P T   +T T  AAA
Sbjct: 468 ASLNVEQQRAVDSEAPLILVQAGPGTGKTHTLVSRVRRTAGRSTRPCT--VITFTNKAAA 525

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ E                                          T  G+ V T 
Sbjct: 526 EVRERLGET---------------------------------------AHTGAGITVATF 546

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           H +C + +++F  E        +   E+   ++EE 
Sbjct: 547 HGYCLSQLRRFQPEL------RVIGPEERALVLEEL 576


>gi|115374363|ref|ZP_01461647.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|310818971|ref|YP_003951329.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|115368673|gb|EAU67624.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392043|gb|ADO69502.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 799

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 15/122 (12%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMS 79
           +    LA +P     ++A  GSGKT +L+ R LR +L+    P  ++  T T+ AA E+ 
Sbjct: 23  EQHACLACNPAVPLLIAAGPGSGKTAVLILRALRHVLVDRVLPERIMITTFTRKAAKEIR 82

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R++E  T             +  +   +    D    R  L  +          T+ + 
Sbjct: 83  TRLIEWGTPL-----------LEALLADRAGPLDADY-RAFLRQV--DINRFVTGTLDSL 128

Query: 140 CE 141
           CE
Sbjct: 129 CE 130


>gi|322620986|gb|EFY17844.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624049|gb|EFY20883.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628211|gb|EFY25000.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633330|gb|EFY30072.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636092|gb|EFY32800.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643708|gb|EFY40260.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648821|gb|EFY45268.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322657983|gb|EFY54251.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322667053|gb|EFY63225.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|323194817|gb|EFZ80004.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196568|gb|EFZ81716.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323205018|gb|EFZ90001.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207780|gb|EFZ92726.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212667|gb|EFZ97484.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214849|gb|EFZ99597.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222579|gb|EGA06944.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226458|gb|EGA10666.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230662|gb|EGA14780.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234987|gb|EGA19073.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239025|gb|EGA23075.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323247232|gb|EGA31198.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253285|gb|EGA37114.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256408|gb|EGA40144.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262416|gb|EGA45972.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267488|gb|EGA50972.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269108|gb|EGA52563.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 1181

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|312194643|ref|YP_004014704.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225979|gb|ADP78834.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1140

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +   +++ +         V A  G+GKT  LV+ V R + A     ++L LT ++ AA E
Sbjct: 44  ALDDAQRAVVEHRGGPLLVLAGPGTGKTTTLVEAVARRVEAGQELGSILVLTFSRRAARE 103

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +S R+   + A                                              T H
Sbjct: 104 LSERITARVGAAFGGPVAW--------------------------------------TFH 125

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           ++C A ++ +P  A       +    +    + E   
Sbjct: 126 SWCYAQLRAYP-MAG-DPAPRLLTGPERFTRLRELID 160


>gi|255692788|ref|ZP_05416463.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Bacteroides finegoldii DSM 17565]
 gi|260621505|gb|EEX44376.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Bacteroides finegoldii DSM 17565]
          Length = 1624

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 55/216 (25%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
            Q++ +    +S+ + E +++   +R   V+A  GSGKT +LV ++  LLL  +     LL
Sbjct: 1064 QKYKQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1122

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             LT ++AAA E   R++E+I   +H  +                                
Sbjct: 1123 MLTFSRAAATEFKQRLMELIGNAAHFVE-------------------------------- 1150

Query: 127  TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                  ++T H++C  ++              + + E +K ++ EA +  + +       
Sbjct: 1151 ------IKTFHSYCFDLLG------------RVGNLEDTKNVVAEATE--MINQGEVEPN 1190

Query: 187  ELKKAFYEILEISNDEDIE-TLISDIISNRTALKLI 221
            ++ K    I E  +    E  L+  +++N   +++I
Sbjct: 1191 KIGKTVLVIDEAQDMSTDEYKLVKALMTNNEEMRMI 1226


>gi|296103028|ref|YP_003613174.1| DNA helicase IV [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057487|gb|ADF62225.1| DNA helicase IV [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 677

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STL 65
           + +   T++      ++     +  +S  V A AGSGKT +LV R   LL         +
Sbjct: 178 YADFFSTVESSPLNPAQARAVVNGEQSLLVLAGAGSGKTSVLVARAGWLLTTGEAVADQI 237

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           L L   + AA EM  R+ E +      +    +  +  IQ        +SK
Sbjct: 238 LLLAFGRKAAQEMDERIQERLHTRDITARTFHALALHIIQQGSKKVPSISK 288


>gi|120609372|ref|YP_969050.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120587836|gb|ABM31276.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 599

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 45/160 (28%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           D       ++    +P  S ++ A  GSGKT  L  ++   L    ++   ++ +T+T  
Sbjct: 5   DKEDLNPEQEAAILEPG-SVFLIACPGSGKTRTLTYKIAYELSRLKSNKQFVVAITYTHR 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA E+  R+  +    S                                        L +
Sbjct: 64  AADEIHERIEGLGVDTS---------------------------------------RLWI 84

Query: 134 QTIHAFCE-AIMQQF--PLEANITSHFAIADEEQSKKLIE 170
            TIH+FC   I++ +    EA +   + + D+ + +K++E
Sbjct: 85  GTIHSFCLEWILKPYGIYHEA-LERGYRVIDQHEREKILE 123


>gi|269127955|ref|YP_003301325.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312913|gb|ACY99287.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 1059

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 44/182 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            + ++ +         V A  G+GKT  +V+ V+  +      P  +L LT ++ AA E+
Sbjct: 23  DEQQRRVVEHAHGPLLVLAGPGTGKTTTIVEAVVDRIERRGCDPERVLVLTFSRKAAEEL 82

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR+   +   +     +                                      T H 
Sbjct: 83  RHRITGRLRRTTRAPLAL--------------------------------------TFHG 104

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           +  A++++  +         +    +   L+E   +  L     D      +  +E L  
Sbjct: 105 YAHALLRRDAIRRGQEP-PRLLSAPEQ--LLE--VRRLLEGEAADGAVHWPRRLHEALTT 159

Query: 199 SN 200
             
Sbjct: 160 RG 161


>gi|239917994|ref|YP_002957552.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|281415830|ref|ZP_06247572.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|239839201|gb|ACS30998.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
          Length = 709

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L      ++  A+       + A AG+GKT  +  R+   + +    P   L LT T  A
Sbjct: 8   LRGLDPEQRRAATALHGPVCILAGAGTGKTRAITHRIAYGVASGVFDPHRTLALTFTARA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           AAEM  R+ + +      +    SA + ++Q   P  
Sbjct: 68  AAEMRTRLRD-LGVAGVQARTFHSAALRQLQYFWPQA 103


>gi|283954348|ref|ZP_06371869.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 414]
 gi|283794147|gb|EFC32895.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
          jejuni 414]
          Length = 676

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + L      + L A+       V A+AG+GKT  +V R+  LL     P  ++ LT T  
Sbjct: 1  MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGIAPQKIMLLTFTNK 60

Query: 74 AAAEMSHRVLE 84
          A+ EM  R+ +
Sbjct: 61 ASKEMIGRLGK 71


>gi|238786418|ref|ZP_04630341.1| Helicase IV (75 kDa helicase) [Yersinia bercovieri ATCC 43970]
 gi|238712678|gb|EEQ04767.1| Helicase IV (75 kDa helicase) [Yersinia bercovieri ATCC 43970]
          Length = 684

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           Q+  ++++     +S+     +   S  V A AGSGKT +LV R   LL  N A P  +L
Sbjct: 186 QDLFQSVESSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAAWLLRRNEARPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIIT-------AWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            L   + AA EM+ R+ + +         +  L+ +I+     K       +SD    R 
Sbjct: 246 LLAFGRQAADEMNSRIKQRLAVDDIQAKTFHALALQIIQQGSRKTPAISKLESDSKARRS 305

Query: 120 LLIT 123
           LLI 
Sbjct: 306 LLIQ 309


>gi|258654033|ref|YP_003203189.1| exodeoxyribonuclease V subunit beta [Nakamurella multipartita DSM
           44233]
 gi|258557258|gb|ACV80200.1| exodeoxyribonuclease V, beta subunit [Nakamurella multipartita DSM
           44233]
          Length = 1139

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 13/167 (7%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  + A+AG+GKTH +   V R +    A P  LL +T  +AA+ E+  RV + +  
Sbjct: 19  PRGTTLLEASAGTGKTHAIGDLVTRYIAEGVARPDQLLVITFGRAASQELRERVRDHLVR 78

Query: 89  WSH-----LSDEILSAEITKIQGKKPNKSDMSKAR-----HLLITILETPGGLKVQTIHA 138
                    +    +  +  +    P   D+ +A+       L   L       + T H 
Sbjct: 79  AERALADPAAARAGADPVHALLAGGPGAHDVDEAQVGRRRDRLRAALAGYDASTILTTHQ 138

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           FC+ ++    +  +      + D      LI +       +     +
Sbjct: 139 FCQFVLTGLGVAGDADPDVELVDTLD--DLIVQVVDDLYIAAFARRD 183


>gi|327389308|gb|EGE87653.1| ATP-dependent helicase/nuclease subunit A domain protein
           [Streptococcus pneumoniae GA04375]
          Length = 183

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  +        ++  VSA+AGSGKT ++V+R+L  L      S L   T T  AA E+ 
Sbjct: 29  TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80  HRVLEIITAWSH 91
            R+ +     S 
Sbjct: 89  ERLEKKSARKSK 100


>gi|226365852|ref|YP_002783635.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus opacus B4]
 gi|226244342|dbj|BAH54690.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus opacus B4]
          Length = 708

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             +      P     V A AG+GKT  + +R+  L+ +       +L +T T  AA EM
Sbjct: 15 DPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVASGHVAAGQVLAVTFTARAAGEM 74

Query: 79 SHRVLEI 85
            R+  +
Sbjct: 75 RGRLRSL 81


>gi|111023344|ref|YP_706316.1| helicase [Rhodococcus jostii RHA1]
 gi|110822874|gb|ABG98158.1| helicase [Rhodococcus jostii RHA1]
          Length = 712

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             +      P     V A AG+GKT  + +R+  L+ +       +L +T T  AA EM
Sbjct: 19 DPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVASGHVAAGQVLAVTFTARAAGEM 78

Query: 79 SHRVLEI 85
            R+  +
Sbjct: 79 RGRLRSL 85


>gi|289568567|ref|ZP_06448794.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T17]
 gi|289542321|gb|EFD45969.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T17]
          Length = 906

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLG 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 134 ----------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|227494824|ref|ZP_03925140.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces coleocanis DSM
           15436]
 gi|226831276|gb|EEH63659.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces coleocanis DSM
           15436]
          Length = 686

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 10/206 (4%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
              +D +     ++ +A+  T    V A AG+GKT  +  R+   +   A    ++L +T
Sbjct: 5   PHLLDALD--PEQRTVATQVTGPLAVLAGAGTGKTRAITYRLAYGVQQGAYDQQSVLAVT 62

Query: 70  HTKAAAAEMSHRV--LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            T  AA EM HR+  L +    S         +++    +         A+H    +   
Sbjct: 63  FTARAAMEMRHRLSSLGVPGIQSRTFHAAALRQLSYFWPQAIGGDVPEIAKHKASLLSAA 122

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              L +  I      +++ F  E    +  ++ D     ++I E  +    ++      +
Sbjct: 123 CNRLGIS-IDK---QLIRDFAAEVE-WAKVSMIDPYDYPQVIAEQHRVVPGNLDATTMAD 177

Query: 188 LKKAFYEILEISNDEDIETLISDIIS 213
           L K +  +   +   D E ++  ++ 
Sbjct: 178 LLKVYESVKTEAGRIDFEDVLLLMVG 203


>gi|289640603|ref|ZP_06472775.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509492|gb|EFD30419.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 750

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAA 76
           +    ++     P     V A AG+GKT  +  R+  L+ + A PS  +L +T T  AA 
Sbjct: 29  ALDPEQRQAVLAPVGPVCVLAGAGTGKTRAITHRIGHLVASGAVPSGQVLAVTFTTRAAG 88

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
           E+  R+   + A    +    +A + ++    P
Sbjct: 89  ELRGRLR-TLGADGVQARTFHAAALRQLGYFWP 120


>gi|157370002|ref|YP_001477991.1| DNA helicase IV [Serratia proteamaculans 568]
 gi|157321766|gb|ABV40863.1| UvrD/REP helicase [Serratia proteamaculans 568]
          Length = 684

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP 62
             S+ +  + I+      S+     +   S  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LESYHDFFQNIETSPLNDSQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRQEAEP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM+ R+ E + + +  +    +  +  IQ        +SK
Sbjct: 242 GQILLLAFGRQAAEEMNERIQERLGSVAIQAKTFHALALQIIQQGNRKVPAISK 295


>gi|283457709|ref|YP_003362295.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133710|dbj|BAI64475.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 639

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 78/203 (38%), Gaps = 24/203 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74
           L      ++ +A++      V A AG+GKT  +  R+   +    +    +L LT T  A
Sbjct: 18  LAGLDPDQRAVATELNGPMRVLAGAGTGKTRAITHRIAYGIAIGRYQGPRVLALTFTLRA 77

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGL 131
           A EM  R+ + + A    +    SA + ++    P     +  S  ++    I E    L
Sbjct: 78  AEEMRTRLHQ-LGAHGVQARTFHSAALRQLVYFWPQVVGGTFPSIVQNKASLITEAANRL 136

Query: 132 KVQTIHAFCEAIMQQFPLEAN------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           ++ T      ++++             +T             +   ++K   ++I   N 
Sbjct: 137 RIST----DRSLLRDLASLIEWAKVQLLTPD---------TIMQRLSEKQLPSAITPQNM 183

Query: 186 EELKKAFYEILEISNDEDIETLI 208
           + + +A+ ++ +  N  D E ++
Sbjct: 184 QRIFQAYEDLKDERNLIDFEDVL 206


>gi|1388172|gb|AAB02825.1| ORFA; putative Rep helicase-like protein [Dichelobacter nodosus]
          Length = 685

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 40/157 (25%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
            Q   +Q  A         V A AGSGKT ++ +++  L+ + +     +  +T T  AA
Sbjct: 24  DQLNPQQRAAVLYLDSPLLVIAGAGSGKTGVITEKIAYLIESAHYDAPNVCAVTFTNKAA 83

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R    +   +H                                      GL + T
Sbjct: 84  REMLARSRARLKKRAH--------------------------------------GLTIAT 105

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
            H     ++++   +AN    F+I D+  S  L+ E 
Sbjct: 106 FHRLGLMMLERDFAKANRRRGFSIFDQHDSLTLLREL 142


>gi|213162023|ref|ZP_03347733.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 670

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|315638600|ref|ZP_07893774.1| ATP-dependent DNA helicase PcrA [Campylobacter upsaliensis JV21]
 gi|315481224|gb|EFU71854.1| ATP-dependent DNA helicase PcrA [Campylobacter upsaliensis JV21]
          Length = 677

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 41/164 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            + +  +++++ E +   D   +  + A AGSGKT  +  R+  L+        + L LT
Sbjct: 1   MKILQSLNESQKEAVRHID--GAMLILAGAGSGKTKTITTRLAYLIDEVGIPAQSTLTLT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA  M  R LE+I     +                                     
Sbjct: 59  FTNKAAMVMKARALELIRDKEAMPLL---------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                T H F    ++         + F + D +  KK+++E  
Sbjct: 85  ----CTFHKFGLMFLRLHIARLGRKNDFVVIDSDDVKKILKEII 124


>gi|256396900|ref|YP_003118464.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363126|gb|ACU76623.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 787

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCL 68
            +  +D +     ++ +A        V A AG+GKT  +  R+   +    + PS +L +
Sbjct: 13  AAALLDALD--PEQRAVAEALHGPVCVLAGAGTGKTRAITYRIAYGVATGEYIPSQVLAV 70

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T T+ AA EM  R+ + + +    +    +A + ++Q   P  
Sbjct: 71  TFTQRAAGEMRGRLRQ-LGSGGVQARTFHAAALRQLQYFWPKA 112


>gi|289705131|ref|ZP_06501535.1| HRDC domain protein [Micrococcus luteus SK58]
 gi|289558159|gb|EFD51446.1| HRDC domain protein [Micrococcus luteus SK58]
          Length = 709

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L      ++  A+       + A AG+GKT  +  R+   + +    P   L LT T  A
Sbjct: 8   LRGLDPEQRRAATALHGPVCILAGAGTGKTRAITHRIAYGVASGVFDPHRTLALTFTARA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           AAEM  R+ + +      +    SA + ++Q   P  
Sbjct: 68  AAEMRTRLRD-LGVAGVQARTFHSAALRQLQYFWPQA 103


>gi|229916829|ref|YP_002885475.1| UvrD/REP helicase [Exiguobacterium sp. AT1b]
 gi|229468258|gb|ACQ70030.1| UvrD/REP helicase [Exiguobacterium sp. AT1b]
          Length = 964

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
           Q   ++ID  S    ++        +  V A AGSGKT  +  +V  L+      P  +L
Sbjct: 165 QSFFDSIDGKSLDGQQRRAVIVNEDANLVVAGAGSGKTLTIAAKVKYLVERKQVQPHEIL 224

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI---- 122
            ++ TK +A EM  R+ E +     +            +G+K       + + ++     
Sbjct: 225 LISFTKKSAEEMKERICERLHIPVEVKTFHGLGMGIIAEGRKQKPQVEDELKKVIRDYCM 284

Query: 123 -TILETPGGLK 132
               E P  +K
Sbjct: 285 HQFYEHPHRMK 295


>gi|157415048|ref|YP_001482304.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 81116]
 gi|157386012|gb|ABV52327.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
          jejuni 81116]
 gi|307747689|gb|ADN90959.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
          M1]
 gi|315931191|gb|EFV10163.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
          jejuni 327]
          Length = 676

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 17 ISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          +S+  +EQ LA+  D  R+  V A+AG+GKT  +V R+  LL     P  ++ LT T  A
Sbjct: 3  LSKLNNEQYLAATADFGRN-LVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKA 61

Query: 75 AAEMSHRVLE 84
          + EM  R+ +
Sbjct: 62 SKEMIGRLGK 71


>gi|323698851|ref|ZP_08110763.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323458783|gb|EGB14648.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1051

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 32/187 (17%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           P     +SA+AGSGKT+ L   +  LL     P  ++  T T+ AA+E+S RV   + A 
Sbjct: 2   PNDLTILSASAGSGKTYTLTGLLAGLLDQGVRPDGVVATTFTRKAASELSARVRSRLIAA 61

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                     +                                + T++A C AI+  + L
Sbjct: 62  GKADAAQCIQDGY------------------------------IGTVNAVCGAILGDYAL 91

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LEISNDEDIETLI 208
           EA ++ +  +  + +   +   A    L  +       + ++     L  S D+ ++ +I
Sbjct: 92  EAGLSPNLDVLPDGEDSAVFRAAVSEVLR-LNTPPLTPVLRSLGLFDLRESWDKPVKRII 150

Query: 209 SDIISNR 215
               +NR
Sbjct: 151 DAARANR 157


>gi|237737885|ref|ZP_04568366.1| DNA helicase II [Fusobacterium mortiferum ATCC 9817]
 gi|229419765|gb|EEO34812.1| DNA helicase II [Fusobacterium mortiferum ATCC 9817]
          Length = 939

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 76/236 (32%), Gaps = 51/236 (21%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +   +Q  A         + +  GSGKT  LV+R + LL+     P  +   T T+ +A 
Sbjct: 2   ELNEKQYEAVRSTEGPLLLISGPGSGKTRTLVERAIYLLVEKKVKPENIFLSTFTEKSAR 61

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  R+ + I   +                                        + + T+
Sbjct: 62  ELLVRISDRIKESNEKI---------------------------------NINEMYIGTL 88

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE---------EAKKSTLASIMLDNNEE 187
           H+    ++ +    +     + + D+   +  I          E  +     I   N+ E
Sbjct: 89  HSIFLRMIDENIEYSFFRDGYRVLDDIDQQFFIYSRIKRFSEIEGYRDFFKDIPGINSWE 148

Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFS--YLWRRKIIEKSLWSI 241
             K     L   N+E     + +I   RT  + I F      ++   ++E++L   
Sbjct: 149 RSKKILWWLNKINEEGKR--LDNI---RTENRKILFLKEAHRVYHEMLVEENLMDF 199


>gi|290957555|ref|YP_003488737.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647081|emb|CBG70180.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 1121

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 39/117 (33%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           +    V A  G+GKT  LV+ V   +   A P+ +L LT ++ AA E+  R+   + A  
Sbjct: 6   SGPLLVLAGPGTGKTTTLVEAVAGRVARGADPARVLVLTFSRKAAVELRDRMALRMGAAR 65

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                                                       T H+FC A+++  
Sbjct: 66  APQA---------------------------------------TTFHSFCYALIRAH 83


>gi|125973485|ref|YP_001037395.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
 gi|256005382|ref|ZP_05430347.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|281417686|ref|ZP_06248706.1| UvrD/REP helicase [Clostridium thermocellum JW20]
 gi|125713710|gb|ABN52202.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
 gi|255990701|gb|EEU00818.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|281409088|gb|EFB39346.1| UvrD/REP helicase [Clostridium thermocellum JW20]
 gi|316940278|gb|ADU74312.1| UvrD/REP helicase [Clostridium thermocellum DSM 1313]
          Length = 706

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 74/211 (35%), Gaps = 48/211 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           I+    ++         + + +  G GKT ++V R   ++L +   P  +L LT +KAAA
Sbjct: 16  INLNPQQKEAVLRIHGPSLLLSVPGGGKTTVIVSRCANMVLNHKIPPEKILTLTFSKAAA 75

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R  +I                                        E    +   T
Sbjct: 76  QDMKTRFCDIFGK-------------------------------------ELARNMVFST 98

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQS--------KKLIEEAKKSTLASIMLDNNEE 187
           IH+FC ++++ + +E+       I ++ +         K++  E     ++   L++   
Sbjct: 99  IHSFCYSVVRCY-VESKNKPMPQILEDGEGQISKNQMLKRIYHEVNNEYISDDRLEDLSN 157

Query: 188 LKKAFYEILEISND-EDIETLISDIISNRTA 217
                  +L   +D + ++  I + I    A
Sbjct: 158 SVSFVKNMLYTEDDIKKLDIGIKNFIDIYNA 188


>gi|229056964|ref|ZP_04196359.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH603]
 gi|228720353|gb|EEL71927.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH603]
          Length = 688

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 13/194 (6%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E
Sbjct: 51  LNEKQLEAVQTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEE 110

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV  +       S  +++     +  K      + +++     IL      ++  I 
Sbjct: 111 IRSRVANLPGMNHAASSYVVAGTFHSVFLK------LLRSQGYNQQILANEKHKQIM-I- 162

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              + I+++  L+ +  +   +A     K  +   K     + +    +E+ + F E+ +
Sbjct: 163 ---KKILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQ 219

Query: 198 ISNDEDIETLISDI 211
             N  D + ++ ++
Sbjct: 220 RHNYIDFDDILLEM 233


>gi|150377540|ref|YP_001314135.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
 gi|150032087|gb|ABR64202.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
          Length = 1051

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 31/138 (22%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A AGSGKT+ +   +  L+++       +L +T T+AAA+++  R+   + A   + 
Sbjct: 7   LVPAGAGSGKTYRIETTLADLVVSGEVSADRILAVTFTEAAASDLRTRIRGALLARGRID 66

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           + +                                 G  V TIHA    ++ +    AN 
Sbjct: 67  EAL------------------------------AIDGAYVGTIHALGLRLLTEHTFAANR 96

Query: 154 TSHFAIADEEQSKKLIEE 171
           +    +  + +   LI +
Sbjct: 97  SPASRLLSDSERDLLIRQ 114


>gi|224584782|ref|YP_002638580.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469309|gb|ACN47139.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 1162

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 1   MIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLSVEELLVVTFTEAATEELRGRIRSN 60

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 61  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 119

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E+ +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 120 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 172

Query: 206 TLISDI 211
            L+ DI
Sbjct: 173 ALLKDI 178


>gi|119953412|ref|YP_945621.1| exodeoxyribonuclease V beta chain [Borrelia turicatae 91E135]
 gi|119862183|gb|AAX17951.1| exodeoxyribonuclease V beta chain [Borrelia turicatae 91E135]
          Length = 1147

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 25/151 (16%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                + A+AG+GKT+IL   +  LL+     PS +L LT TK A  EM  R+L+ I   
Sbjct: 11  NEKILIEASAGTGKTYILENTITNLLINKTYSPSEILVLTFTKKATEEMHIRILKSIENA 70

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              S    S                      L  I E    + + TI+ F    +  F +
Sbjct: 71  YQNSQTDKS----------------------LKKIYEQSNKIFISTINKFALHSLNNFQI 108

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           E      +++ +   S+  I+E     L   
Sbjct: 109 ETEHFVRYSVKENFTSE--IDEIVYEFLRKA 137


>gi|183980978|ref|YP_001849269.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium marinum M]
 gi|183174304|gb|ACC39414.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium marinum M]
          Length = 1110

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 19/197 (9%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
            DL+    +E         +  + A+AG+GKT  L   V R +    A    +L +T  +
Sbjct: 4   FDLLGPLPAE-------NSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGR 56

Query: 73  AAAAEMSHRVL-------EIITAWSHLSDEILSAEITKIQGKKPNKSDMSK--ARHLLIT 123
           AA+ E+  RV         +     + SD+   A   ++     + +   +   +  L  
Sbjct: 57  AASQELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRD 116

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            L       + T H FC+ +++   +  +  +   + ++    +L+ E            
Sbjct: 117 ALAGFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLD--ELVTEIVDDLYLVHFGR 174

Query: 184 NNEELKKAFYEILEISN 200
           + ++    + + L I+ 
Sbjct: 175 DRDDPPLTYRDALRIAR 191


>gi|118616501|ref|YP_904833.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium ulcerans
           Agy99]
 gi|118568611|gb|ABL03362.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium ulcerans
           Agy99]
          Length = 1110

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 19/197 (9%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
            DL+    +E         +  + A+AG+GKT  L   V R +    A    +L +T  +
Sbjct: 4   FDLLGPLPAE-------NSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGR 56

Query: 73  AAAAEMSHRVL-------EIITAWSHLSDEILSAEITKIQGKKPNKSDMSK--ARHLLIT 123
           AA+ E+  RV         +     + SD+   A   ++     + +   +   +  L  
Sbjct: 57  AASQELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRD 116

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            L       + T H FC+ +++   +  +  +   + ++    +L+ E            
Sbjct: 117 ALAGFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLD--ELVTEIVDDLYLVHFGR 174

Query: 184 NNEELKKAFYEILEISN 200
           + ++    + + L I+ 
Sbjct: 175 DRDDPPLTYRDALRIAR 191


>gi|229010620|ref|ZP_04167821.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides DSM 2048]
 gi|228750664|gb|EEM00489.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides DSM 2048]
          Length = 688

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 13/194 (6%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E
Sbjct: 51  LNEKQLEAVQTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEE 110

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV  +       S  +++     +  K      + +++     IL      ++  I 
Sbjct: 111 IRSRVANLPGMNHAASSYVVAGTFHSVFLK------LLRSQGYNQQILANEKHKQIM-I- 162

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              + I+++  L+ +  +   +A     K  +   K     + +    +E+ + F E+ +
Sbjct: 163 ---KKILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQ 219

Query: 198 ISNDEDIETLISDI 211
             N  D + ++ ++
Sbjct: 220 RHNYIDFDDILLEM 233


>gi|229132128|ref|ZP_04260987.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST196]
 gi|228651348|gb|EEL07324.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST196]
          Length = 688

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 13/194 (6%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E
Sbjct: 51  LNEKQLEAVQTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEE 110

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV  +       S  +++     +  K      + +++     IL      ++  I 
Sbjct: 111 IRSRVANLPGMNHAASSYVVAGTFHSVFLK------LLRSQGYNQQILANEKHKQIM-I- 162

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              + I+++  L+ +  +   +A     K  +   K     + +    +E+ + F E+ +
Sbjct: 163 ---KKILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQ 219

Query: 198 ISNDEDIETLISDI 211
             N  D + ++ ++
Sbjct: 220 RHNYIDFDDILLEM 233


>gi|221640075|ref|YP_002526337.1| DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221160856|gb|ACM01836.1| DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 1695

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 27/197 (13%)

Query: 12   ETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
            + ++ +     ++++A D    +  V A  GSGKT +LV R+  LL +    P  +L L+
Sbjct: 1072 QIVEDLGNPVQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLS 1131

Query: 70   HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            + + AAAE+  R+  ++   +          +             ++ R           
Sbjct: 1132 YNRHAAAEIRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQRD---------- 1181

Query: 130  GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                       + ++++   + N         E Q + LI+  +      I++D  +++ 
Sbjct: 1182 ----------FQDVLREAVRQINGEGLSRTEAEAQREALIQGYRW-----ILVDEYQDIG 1226

Query: 190  KAFYEILEISNDEDIET 206
            +  Y+++       +E 
Sbjct: 1227 REEYDLIAAVAGRSLED 1243


>gi|302878146|ref|YP_003846710.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302580935|gb|ADL54946.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 565

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 49/157 (31%), Gaps = 42/157 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           Q   +Q  A +      V A  GSGKT +L  R  RLL  N     L  +T T+ AAAE+
Sbjct: 2   QLNQQQARAVNALGHCSVLACPGSGKTRVLSMRAARLLSENKT-GRLCAVTFTRDAAAEL 60

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+L +                                             L V T H+
Sbjct: 61  KSRILHLCGEREAK-------------------------------------RLAVGTFHS 83

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              + +++    + +     +  + +   L+      
Sbjct: 84  VALSQIRRVSHLSGM----KLLSDGERMGLLRRCYSQ 116


>gi|160896003|ref|YP_001561585.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
 gi|160361587|gb|ABX33200.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
          Length = 705

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 39/158 (24%)

Query: 16  LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +     QL A         V A AGSGKT ++  ++ RL+     P  +  +T T  A
Sbjct: 17  MSAGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITHKIGRLIEMGMAPRRIAAITFTNKA 76

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
                                           ++       +A+ +L           V 
Sbjct: 77  ---------------------------AAEMRERAAGLIGRQAKDVL-----------VC 98

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           T HA    ++++      +   F+I D +    ++++ 
Sbjct: 99  TFHALGVRMVREDGHVLGLKPQFSILDADDVTGILKDC 136


>gi|255281748|ref|ZP_05346303.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
 gi|255267815|gb|EET61020.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
          Length = 604

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 45/189 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++ +K+++         A V A  GSGKT ++ +R   L       P  +L +T TKAAA
Sbjct: 1   MALSKAQKEAVMHREGPAIVLAGPGSGKTTVITERTKYLTQQCGIPPIHILVVTFTKAAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R L                              ++ +R   +            T
Sbjct: 61  MEMQKRFLA-----------------------------LTDSRQTQVRF---------GT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+    I++             IA EE+  +++ E        I +++  E        
Sbjct: 83  FHSLFFEILKHAYHYT----AANIASEEEKYRILREIISPM--DIGIEDEAEFLHDTARE 136

Query: 196 LEISNDEDI 204
           +    +E I
Sbjct: 137 ISRVKNERI 145


>gi|163939126|ref|YP_001644010.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
 gi|163861323|gb|ABY42382.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
          Length = 688

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 13/194 (6%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E
Sbjct: 51  LNEKQLEAVQTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEE 110

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV  +       S  +++     +  K      + +++     IL      ++  I 
Sbjct: 111 IRSRVANLPGMNHAASSYVVAGTFHSVFLK------LLRSQGYNQQILANEKHKQIM-I- 162

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              + I+++  L+ +  +   +A     K  +   K     + +    +E+ + F E+ +
Sbjct: 163 ---KKILKELRLKDDYDAETILAMISLEKNNLNRPKDVKAKTPVEQEFKEVYERFEEVKQ 219

Query: 198 ISNDEDIETLISDI 211
             N  D + ++ ++
Sbjct: 220 RHNYIDFDDILLEM 233


>gi|306822348|ref|ZP_07455727.1| excision endonuclease subunit UvrD [Bifidobacterium dentium ATCC
           27679]
 gi|309802142|ref|ZP_07696251.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
 gi|304554346|gb|EFM42254.1| excision endonuclease subunit UvrD [Bifidobacterium dentium ATCC
           27679]
 gi|308221222|gb|EFO77525.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
          Length = 502

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 11/140 (7%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           M++ ++    +ETI L     +++  A+       + A AG+GKT  + +R+        
Sbjct: 1   MVHMDA---SAETI-LEGLDDAQRAAATTVNGPVRIIAGAGAGKTRTVTRRIAYACATGE 56

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDM 114
             P   L +T +  AAAEM  R+ ++    +  +    SA + +I+   P+        +
Sbjct: 57  WDPRRALAVTFSVKAAAEMRSRLSQLEVDGAVKAATFHSAALHQIRRVWPDLCEGPFPHI 116

Query: 115 SKA-RHLLITILETPGGLKV 133
           S+  R L+   L     ++V
Sbjct: 117 SRQPRELVARSLRRVTTMQV 136


>gi|293394677|ref|ZP_06638969.1| exodeoxyribonuclease V beta subunit [Serratia odorifera DSM 4582]
 gi|291422803|gb|EFE96040.1| exodeoxyribonuclease V beta subunit [Serratia odorifera DSM 4582]
          Length = 1186

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 17/189 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                +L +T T+AA  E+  R+   
Sbjct: 21  LIEASAGTGKTFTIGALYLRLLLGLGKQAAFPRPLTVEEILVVTFTEAATEELRSRIRSN 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIM 144
           I                 +      + D        +   E       + TIH FC+ ++
Sbjct: 81  IHGLRIACVRGREQCTDPLFSALMAEIDDLADAAAQLLAAERQMDEAAIFTIHGFCQRML 140

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
                E+ I   F     +    L  +A               + +A  +          
Sbjct: 141 AHNAFESGI--LFEQTLIQDELPLRRQACADFWRRQCYPLPLAVARAVSQ-----EWSGP 193

Query: 205 ETLISDIIS 213
           E L++D+  
Sbjct: 194 EALLADLAG 202


>gi|297562751|ref|YP_003681725.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296847199|gb|ADH69219.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 1060

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 49/195 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            ++++ +         V A  G+GKT  +V+ V+  +      PS +L LT ++ AA E+
Sbjct: 14  DENQRRVVEHEGGPLLVLAGPGTGKTTTIVESVVDRIDHRGTDPSRVLVLTFSRKAAQEL 73

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +   +     +                                      T H+
Sbjct: 74  RERITARLRRTTREPLAL--------------------------------------TFHS 95

Query: 139 FCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +  A++++ F    ++     +    +   L+E   +  L    LD   +  +     LE
Sbjct: 96  YAYALIRREFQRMGDLPP--RLLSGPEQ--LME--VRELLRGEALDGAADWPERLRPALE 149

Query: 198 ISNDEDIETLISDII 212
                     + D +
Sbjct: 150 T---RGFAEELRDFL 161


>gi|295087178|emb|CBK68701.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens
            XB1A]
          Length = 1624

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 57/205 (27%)

Query: 21   KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
            K +  + SD  +R   V+A  GSGKT +LV ++  LLL  +     LL LT ++AAA E 
Sbjct: 1075 KRQLDIISDKVSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEF 1134

Query: 79   SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
              R++E+I   +H  +                                      ++T H+
Sbjct: 1135 KQRLMELIGNAAHFVE--------------------------------------IKTFHS 1156

Query: 139  FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            +C  ++              I + E SK ++ +A +      +  N   + K    +++ 
Sbjct: 1157 YCFDLLG------------RIGNLEDSKNVVSKAAEMICQGEVEPNK--IGKTVL-VIDE 1201

Query: 199  SNDEDIET--LISDIISNRTALKLI 221
            + D   E   L+  +I+N   +++I
Sbjct: 1202 AQDMGAEEHALVKALIANYEEMRVI 1226


>gi|229166170|ref|ZP_04293930.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH621]
 gi|228617268|gb|EEK74333.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH621]
          Length = 688

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 13/194 (6%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ + + HP  +L LT T+ AA E
Sbjct: 51  LNEKQLEAVQTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEE 110

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV  +       S  +++     +  K      + +++     IL      ++  I 
Sbjct: 111 IRSRVANLPGMNHAASSYVVAGTFHSVFLK------LLRSQGYNQQILANEKHKQIM-I- 162

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
              + I+++  L+ +  +   +A     K  +   K     + +    +E+ + F E+ +
Sbjct: 163 ---KKILKELRLKDDYDAETILAMISLEKNNLNRPKDVKAKTPVEQEFKEVYERFEEVKQ 219

Query: 198 ISNDEDIETLISDI 211
             N  D + ++ ++
Sbjct: 220 RHNYIDFDDILLEM 233


>gi|251795299|ref|YP_003010030.1| UvrD/REP helicase [Paenibacillus sp. JDR-2]
 gi|247542925|gb|ACS99943.1| UvrD/REP helicase [Paenibacillus sp. JDR-2]
          Length = 692

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 36/139 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            I   + +              A AGSGKT +LV R   +L +    P  LL +T +K A
Sbjct: 56  GIRLNQRQISAVRHIDGPILTLAGAGSGKTSVLVCRTGYMLSVRGIPPQQLLLMTFSKKA 115

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+                   +++       +   +AR                
Sbjct: 116 ADEMKLRI-------------------SQLPNIGQGAASRIEAR---------------- 140

Query: 135 TIHAFCEAIMQQFPLEANI 153
           T H+FC  ++++   + NI
Sbjct: 141 TFHSFCLLMLRRRGYKQNI 159


>gi|117928978|ref|YP_873529.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
 gi|117649441|gb|ABK53543.1| ATP-dependent DNA helicase, Rep family [Acidothermus
          cellulolyticus 11B]
          Length = 508

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
          +D+++    +Q  A         + A  G+GKT  +  R+   + +    P  +L +T T
Sbjct: 8  VDVLAALDDDQRAAVTAMPGPVGILAGPGTGKTRTIAHRIAHAVQSGQWRPQQVLAVTFT 67

Query: 72 KAAAAEMSHRVL 83
            AAAE+ HR+ 
Sbjct: 68 NRAAAELRHRLR 79


>gi|323692617|ref|ZP_08106849.1| UvrD/REP helicase [Clostridium symbiosum WAL-14673]
 gi|323503314|gb|EGB19144.1| UvrD/REP helicase [Clostridium symbiosum WAL-14673]
          Length = 611

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
          ++++           + A  GSGKT ++ QR+  L  + N +P+ +L +T T+AAA EM 
Sbjct: 5  RTQEQAIRHNEGPMMILAGPGSGKTTVITQRIKYLTESLNINPADILVITFTRAAAEEMK 64

Query: 80 HRVLEIITAWSHLS 93
           R + +    S ++
Sbjct: 65 ERYIRLTGNASRVT 78


>gi|323483653|ref|ZP_08089037.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
 gi|323403080|gb|EGA95394.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
          Length = 611

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
          ++++           + A  GSGKT ++ QR+  L  + N +P+ +L +T T+AAA EM 
Sbjct: 5  RTQEQAIRHNEGPMMILAGPGSGKTTVITQRIKYLTESLNINPADILVITFTRAAAEEMK 64

Query: 80 HRVLEIITAWSHLS 93
           R + +    S ++
Sbjct: 65 ERYIRLTGNASRVT 78


>gi|83954762|ref|ZP_00963473.1| Exodeoxyribonuclease V, beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83841046|gb|EAP80217.1| Exodeoxyribonuclease V, beta subunit [Sulfitobacter sp. NAS-14.1]
          Length = 1068

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 37/151 (24%)

Query: 27  ASDPTRSAWVSANAGSGKTHI----LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           A        V A AG+GKTH     L   V R +     P  +L +T T+AAA E+  R+
Sbjct: 6   ADSDRGLVIVPAGAGAGKTHRIKTQLSDWVKRKI---VRPERILAVTFTEAAAGELRERI 62

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
              + A   +++ +                                    V TIH     
Sbjct: 63  RAGLLADGLVTEAM------------------------------AVERAYVSTIHGLGLR 92

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
           ++ +  L A  +       + + + LI +A 
Sbjct: 93  LLTEHALAAGASLQPRHLGDAERELLIRQAL 123


>gi|225377484|ref|ZP_03754705.1| hypothetical protein ROSEINA2194_03132 [Roseburia inulinivorans DSM
           16841]
 gi|225210676|gb|EEG93030.1| hypothetical protein ROSEINA2194_03132 [Roseburia inulinivorans DSM
           16841]
          Length = 734

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 55/220 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCL 68
            + T  L    + ++    D + +  V+AN GSGKT +L+ +V+ L      P   ++ L
Sbjct: 1   MNYTQQLQRLNEYQKAAVFDESSACLVNANVGSGKTTVLITKVMYLHYEKQIPYEQMVVL 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA E+  R+              L  EI + Q                       
Sbjct: 61  TFTNKAADEIKERL------------YALEPEIKEEQLWGF------------------- 89

Query: 129 GGLKVQTIHAFCEAIMQQF-PLE-ANITSHFAIADEEQSKKLIEEAK---------KSTL 177
                 T H+ C  ++++  P+E    T  F + D ++  ++ E+           K+ L
Sbjct: 90  -----GTFHSVCLTMLKKMLPVENLGYTKEFMVMDPDEELEMAEQLILTYQLKIKYKNRL 144

Query: 178 ASIMLDNNEELKKAFYEILEISNDED-------IETLISD 210
              +   N + +    ++  +  +E         + L+ +
Sbjct: 145 KKRLEQKNSKYQDDIEKLKALLKEEKRRQDKMTFDELLDN 184


>gi|296270924|ref|YP_003653556.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093711|gb|ADG89663.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 682

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 14 IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
          +D++     EQ  +A        V A AG+GKT  +  R+   +      P ++L +T T
Sbjct: 1  MDILEGLDPEQREVALAVRGPVCVLAGAGTGKTRAITHRIAYAVRTGVVEPQSVLAVTFT 60

Query: 72 KAAAAEMSHRVLEI 85
            AAAE+ HR+  +
Sbjct: 61 TRAAAELRHRLRAL 74


>gi|295836621|ref|ZP_06823554.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
 gi|197699607|gb|EDY46540.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
          Length = 741

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L      ++ +A   T    V A AG+GKT  L  R+   +      P T+L +T T+ A
Sbjct: 21  LHGLDPEQREVALALTGPVCVLAGAGTGKTRALTHRIAYGVRTGRYKPGTVLAVTFTQRA 80

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
           A EM  R+ E + A    +    SA + ++Q   P
Sbjct: 81  AGEMRGRLRE-LGAHGVQARTFHSAALRQLQFFWP 114


>gi|148925999|ref|ZP_01809685.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845478|gb|EDK22570.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 691

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|86139558|ref|ZP_01058126.1| hypothetical protein MED193_00380 [Roseobacter sp. MED193]
 gi|85823741|gb|EAQ43948.1| hypothetical protein MED193_00380 [Roseobacter sp. MED193]
          Length = 1050

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 31/137 (22%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A AG+GKT+ + + +   +      P  +L +T T+AAA+E+  RV   +     +S
Sbjct: 6   IVPAGAGAGKTYHIQKTLADWVQDGSVAPGRILAVTFTEAAASELRGRVQAELMKRDRIS 65

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D +                                    V TIHA  + ++ +    A  
Sbjct: 66  DALE------------------------------IDHAYVGTIHALGQRLLTEHAFAAGR 95

Query: 154 TSHFAIADEEQSKKLIE 170
           +    +  E +   LI 
Sbjct: 96  SPRNRLLSEPERDLLIR 112


>gi|325922511|ref|ZP_08184274.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas gardneri ATCC 19865]
 gi|325547019|gb|EGD18110.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas gardneri ATCC 19865]
          Length = 233

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 37/185 (20%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L     RL++        +L +T T+AA  E+  R+ E +   + L 
Sbjct: 20  LIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAATQELRRRIRERLVLAATLV 79

Query: 94  DEILSAEITKIQGKKPNKS------------DMSKA----------------RHLLITIL 125
            +          G   + S             +++A                R  L   +
Sbjct: 80  PDAPVGAAQAATGLANDPSWPGPLLQEAPDVLLTRAVLATHLATGTETPAALRRRLQQAV 139

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEAN--------ITSHFAIADEEQSKKLIEEAKKSTL 177
           E      V TIH FC  ++++  LE+         + +   +  E  +    + A  + +
Sbjct: 140 EEIDLAAVFTIHGFCARVLREHALESGQAFAAPELLANDRELLGEVAADLWRQRAADAAM 199

Query: 178 ASIML 182
           A  ++
Sbjct: 200 AEDLI 204


>gi|313681637|ref|YP_004059375.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313154497|gb|ADR33175.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 682

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72
          +++S     Q  A +       + A AGSGKT  +  R+  LL          L LT T 
Sbjct: 3  EILSNLNEAQRSAVERIDGPLLILAGAGSGKTKTITTRLAYLLDQVGIPAGNTLTLTFTN 62

Query: 73 AAAAEMSHRVLEIITAWSHLS 93
           AA EM  R + +IT  S+  
Sbjct: 63 KAAKEMRERAMGLITQNSYPP 83


>gi|237842345|ref|XP_002370470.1| uvrD/REP helicase domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211968134|gb|EEB03330.1| uvrD/REP helicase domain-containing protein [Toxoplasma gondii
           ME49]
 gi|221502602|gb|EEE28322.1| uvrD/REP helicase domain-containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 2851

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 10  HSETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           HS+    +S+   ++ +   P   +  V A  GSGKT  +  R+LRLLL    P  +L L
Sbjct: 722 HSKIFGQLSE--EQRRVVLAPAHANLCVIAGPGSGKTTAITARILRLLLEGEGP--ILAL 777

Query: 69  THTKAAAAEMSHRVLE 84
           T T+  A E+  RV++
Sbjct: 778 TFTRRGAEELRTRVVD 793



 Score = 41.8 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           L    +  G + V T H F   ++++      +   F +A   +  +L  E  ++ 
Sbjct: 919 LPLFHDLAGRVLVGTFHKFGLLVLRRHGRAVGVPPSFLVATATRQGQLAREVLEAF 974


>gi|284033218|ref|YP_003383149.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812511|gb|ADB34350.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 707

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          L +    ++ +A+       V A AG+GKT  +  R+   +      P  +L +T T+ A
Sbjct: 21 LEALDPEQRAVATALHGPVVVMAGAGTGKTRAITHRIAYGVRTGTYDPVRVLAVTFTQRA 80

Query: 75 AAEMSHRVLEI 85
          A EM  R+ ++
Sbjct: 81 AGEMRGRLAQL 91


>gi|42780420|ref|NP_977667.1| ATP-dependent DNA helicase UvrD [Bacillus cereus ATCC 10987]
 gi|42736339|gb|AAS40275.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus ATCC
           10987]
          Length = 688

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S+ +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASNYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|295696820|ref|YP_003590058.1| UvrD/REP helicase [Bacillus tusciae DSM 2912]
 gi|295412422|gb|ADG06914.1| UvrD/REP helicase [Bacillus tusciae DSM 2912]
          Length = 740

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 62/190 (32%), Gaps = 54/190 (28%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++           + A+ GSGKT  +V R+  L+      PS +  LT ++AAA +M  R
Sbjct: 23  QKQAVLYTEGPLLLLASPGSGKTTTIVMRIGYLVEEKGVEPSRIKALTFSRAAATDMKQR 82

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
             +     +                                      GG+   TIH+   
Sbjct: 83  FQQFFPGPA-------------------------------------AGGVDFSTIHSLAF 105

Query: 142 AIMQQFPLEANITSHFAIADEEQS--------------KKLIEEAKKSTLASIMLDNNEE 187
            ++Q+    A I   + + + +                ++++ E  +  +   + ++  E
Sbjct: 106 QVVQEHFRRAGI--KYRVIEGDAGGQVASGSHPGLPHKRQILRELYRRIVGENLTEDQLE 163

Query: 188 LKKAFYEILE 197
               +   ++
Sbjct: 164 ELTTYITFVK 173


>gi|295096303|emb|CBK85393.1| Superfamily I DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 692

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP- 62
              + +   T++      ++     +  +S  V A AGSGKT +LV R   LL       
Sbjct: 190 LTQYADFFSTVESSPLNPAQARAVVNGEQSLLVLAGAGSGKTSVLVARAGWLLTTGEAVA 249

Query: 63  STLLCLTHTKAAAAEMSHRVLEII-------TAWSHLSDEILSAEITKIQGKKPNKSDMS 115
             +L L   + AA EM  R+   +         +  L+  I+     K+      ++D  
Sbjct: 250 DQILLLAFGRKAAQEMDERIQARLHTQDISARTFHSLALHIIQQGSKKVPVVSKLENDAQ 309

Query: 116 KARHLLITI 124
             + L I  
Sbjct: 310 ARQALFIKA 318


>gi|311280136|ref|YP_003942367.1| UvrD/REP helicase [Enterobacter cloacae SCF1]
 gi|308749331|gb|ADO49083.1| UvrD/REP helicase [Enterobacter cloacae SCF1]
          Length = 684

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 1/111 (0%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           +    E I+      ++     +  RS  V A AGSGKT +LV R   L+    A    +
Sbjct: 185 YAAFFEHIESSPLNPAQARSVVNGERSLLVLAGAGSGKTSVLVARAGWLMTRGEAAAEQI 244

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           L L   + AA EM  R+ E +   +  +    +  +  I+        +S+
Sbjct: 245 LLLAFGRKAAQEMDERIRERLNTDAISAQTFHALALHIIRQGSKKVPTISR 295


>gi|229817515|ref|ZP_04447797.1| hypothetical protein BIFANG_02778 [Bifidobacterium angulatum DSM
           20098]
 gi|229785304|gb|EEP21418.1| hypothetical protein BIFANG_02778 [Bifidobacterium angulatum DSM
           20098]
          Length = 716

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 18  SQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++   EQ+        +  V A AG+GKT  +V  +  LL    A P+ +L L+ T+ +A
Sbjct: 158 NELSDEQISAIVGAAHNTLVLAGAGTGKTTTIVGYIAWLLNTGKAQPNEILVLSFTRKSA 217

Query: 76  AEMSHRVLEIITAW 89
            EMS R+     A 
Sbjct: 218 DEMSARIQAQTGAA 231


>gi|86150413|ref|ZP_01068639.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88596728|ref|ZP_01099965.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|85839238|gb|EAQ56501.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88191569|gb|EAQ95541.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|284926330|gb|ADC28682.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 691

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|318060448|ref|ZP_07979171.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 720

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L      ++ +A   T    V A AG+GKT  L  R+   +      P T+L +T T+ A
Sbjct: 2   LHGLDPEQREVALALTGPVCVLAGAGTGKTRALTHRIAYGVRTGRYKPGTVLAVTFTQRA 61

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
           A EM  R+ E + A    +    SA + ++Q   P
Sbjct: 62  AGEMRGRLRE-LGAHGVQARTFHSAALRQLQFFWP 95


>gi|269955593|ref|YP_003325382.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304274|gb|ACZ29824.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
          Length = 685

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L +    ++ +A+       V A AG+GKT  +  R+   +      P+++L +T T  A
Sbjct: 18  LDALDPEQREVATALRGPVVVLAGAGTGKTRAITHRIAYGVRTGVYKPNSVLAVTFTARA 77

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A EM  R+ E +      +    +A + ++    P     + +R L           +
Sbjct: 78  AGEMRTRLRE-LGVAGVQARTFHAAALRQLGYFWPRVIGGAPSRILEHKAPLVAEAAR 134


>gi|205355847|ref|ZP_03222616.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346281|gb|EDZ32915.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 691

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|52144107|ref|YP_082721.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|51977576|gb|AAU19126.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 688

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|86152725|ref|ZP_01070930.1| ATP-dependent DNA helicase pcrA [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843610|gb|EAQ60820.1| ATP-dependent DNA helicase pcrA [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 691

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|158321059|ref|YP_001513566.1| hypothetical protein Clos_2033 [Alkaliphilus oremlandii OhILAs]
 gi|158141258|gb|ABW19570.1| hypothetical protein Clos_2033 [Alkaliphilus oremlandii OhILAs]
          Length = 812

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 49/201 (24%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPST 64
           S QE+ E    I + K E ++ +DPT    V+A  G+GKT+ L++R+  L L    +P  
Sbjct: 192 SSQEN-EIKREILEDKQEDVIVADPTTKILVNAGPGTGKTYTLIERIKYLTLEEGINPEN 250

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++ L+ +KAA  E+  R+ + I       D  L                           
Sbjct: 251 MMILSFSKAAIGEIHKRLSKDIEDDVSYWDLNL--------------------------- 283

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD---EEQSKKLIEEAKK-----ST 176
                 + ++T  +F   +M+       I   + ++    EE+ +  IEE KK     S+
Sbjct: 284 ------VDIRTFDSFATYVMKA------IDQDYDLSGKGYEERIELCIEEIKKHSDIFSS 331

Query: 177 LASIMLDNNEELKKAFYEILE 197
           +  +++D  ++L      +++
Sbjct: 332 IEHVIVDEIQDLVGVRARLVQ 352


>gi|302521806|ref|ZP_07274148.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
 gi|302430701|gb|EFL02517.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
          Length = 756

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L      ++ +A   T    V A AG+GKT  L  R+   +      P T+L +T T+ A
Sbjct: 21  LHGLDPEQREVALALTGPVCVLAGAGTGKTRALTHRIAYGVRTGRYKPGTVLAVTFTQRA 80

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
           A EM  R+ E + A    +    SA + ++Q   P
Sbjct: 81  AGEMRGRLRE-LGAHGVQARTFHSAALRQLQFFWP 114


>gi|197303176|ref|ZP_03168218.1| hypothetical protein RUMLAC_01899 [Ruminococcus lactaris ATCC
          29176]
 gi|197297716|gb|EDY32274.1| hypothetical protein RUMLAC_01899 [Ruminococcus lactaris ATCC
          29176]
          Length = 609

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +   ++++           V A  GSGKT  +V RV  L+      P  +L +T T+ AA
Sbjct: 1  MGLNEAQKDAVLHKDGPCLVLAGPGSGKTLTIVNRVKYLIEGYKVRPEEILVVTFTRFAA 60

Query: 76 AEMSHRVLEIITA 88
          AEM  R+  ++  
Sbjct: 61 AEMRSRLCSLMGK 73


>gi|158312789|ref|YP_001505297.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108194|gb|ABW10391.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 759

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             +      P     + A AG+GKT  +  R+  ++         +L +T T  AA E+
Sbjct: 34 DPEQLAAVLAPVGPVCILAGAGTGKTRTITHRIAHMVTEREVGAGQILAVTFTNRAAGEL 93

Query: 79 SHRVL 83
            R+ 
Sbjct: 94 RGRLR 98


>gi|323497309|ref|ZP_08102328.1| DNA helicase IV [Vibrio sinaloensis DSM 21326]
 gi|323317666|gb|EGA70658.1| DNA helicase IV [Vibrio sinaloensis DSM 21326]
          Length = 688

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 13/132 (9%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++ T+ + +L +D   +  V A AGSGKT +L  RV  LL ++ A    +L L   + AA
Sbjct: 200 LNLTQQQAVLLND--DNNLVLAGAGSGKTSVLTARVAYLLQSHLAQAEDILMLAFGRDAA 257

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R+   +     L+ E +        G +  K   SK   +    L+         
Sbjct: 258 KEMKERLNTKVG----LAAENIKVNTFHQLGLQILKQVESKEIVISPIALDDKQR----- 308

Query: 136 IHAFCEAIMQQF 147
            HA+C   +++ 
Sbjct: 309 -HAWCVDWLKKH 319


>gi|256831955|ref|YP_003160682.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
 gi|256685486|gb|ACV08379.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
          Length = 690

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTH 70
           E +D +     ++ +A+  +    V A AG+GKT  +  R+   +    + P+++L +T 
Sbjct: 22  EILDALD--PDQRAVATTLSGPVCVLAGAGTGKTRAITHRIAYGVRTGHYAPTSVLAVTF 79

Query: 71  TKAAAAEMSHRVLEI------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           T  AA EM  R+ ++         +   + + LS    ++ G  P      KAR
Sbjct: 80  TARAAGEMRARLAQLGVVGVQARTFHAAALKQLSYFWPRVVGGAPPTIVEHKAR 133


>gi|183598401|ref|ZP_02959894.1| hypothetical protein PROSTU_01795 [Providencia stuartii ATCC 25827]
 gi|188020579|gb|EDU58619.1| hypothetical protein PROSTU_01795 [Providencia stuartii ATCC 25827]
          Length = 684

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 4/136 (2%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
            + + +  + ++      S+ L   +   +  V A AGSGKT +LV R   LLL   A  
Sbjct: 182 LSRYSDFFQHVETSPLNSSQALSVINGEDNVLVLAGAGSGKTSVLVARAGWLLLRKLAKA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ---GKKPNKSDMSKARH 119
             +L L   + AA EM+ R+ E +      +    +  +  I+    K P  S+      
Sbjct: 242 EQILLLAFGRKAAQEMNERIQERLQQEDIEAKTFHALALYIIREGSNKSPAISEFETDSQ 301

Query: 120 LLITILETPGGLKVQT 135
               +L      +  T
Sbjct: 302 KRGELLLNEWRTQCST 317


>gi|75762299|ref|ZP_00742182.1| ATP-dependent DNA helicase , uvrD-rep family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74490222|gb|EAO53555.1| ATP-dependent DNA helicase , uvrD-rep family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 688

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|49477145|ref|YP_035463.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328701|gb|AAT59347.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 688

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHTASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|229143938|ref|ZP_04272355.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST24]
 gi|228639501|gb|EEK95914.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST24]
          Length = 688

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|157415362|ref|YP_001482618.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|157386326|gb|ABV52641.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748003|gb|ADN91273.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315932239|gb|EFV11182.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 691

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|189913135|ref|YP_001965023.1| Exodeoxyribonuclease V, beta subunit [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|189913470|ref|YP_001964698.1| Exodeoxyribonuclease V beta chain, UvrD subfamily [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167777811|gb|ABZ96110.1| Exodeoxyribonuclease V, beta subunit [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781538|gb|ABZ99834.1| Exodeoxyribonuclease V beta chain, UvrD subfamily [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1209

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 33/181 (18%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-------TLLCLTHTKAAAAEMSHRVL 83
               ++ A+AG+GKTH+++Q +  ++  +             L LT T+ AA E+  R+ 
Sbjct: 9   NHPNFIEASAGTGKTHLIMQMLGDVMTHDVTNHTKENRLLQFLVLTFTEKAAGELKARLK 68

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
             I                   GK P               L     + + TIH FC  +
Sbjct: 69  LKILELYE-------------NGKHPE----------YYHYLRDLDQVTISTIHGFCNMV 105

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           + ++P+E     +  +   E+   LI +       S     ++E       I  +   ED
Sbjct: 106 LTEYPVETQNNPNVKLTSNEE---LIRKTFYDLKRSQWEGRDKESLANDILISNLKKKED 162

Query: 204 I 204
           +
Sbjct: 163 L 163


>gi|288922526|ref|ZP_06416708.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288346115|gb|EFC80462.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 754

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             +      P     + A AG+GKT  +  R+  L+         +L +T T  AAAE+
Sbjct: 8  DPEQLAAVLAPIGPVCILAGAGTGKTRTITHRIAHLVTQREVGAGQILAVTFTNRAAAEL 67

Query: 79 SHRVL 83
            R+ 
Sbjct: 68 RGRLR 72


>gi|153952234|ref|YP_001397786.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939680|gb|ABS44421.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 691

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSYNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|57237983|ref|YP_179232.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni RM1221]
 gi|57166787|gb|AAW35566.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           RM1221]
 gi|315058542|gb|ADT72871.1| ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial
           type 2 [Campylobacter jejuni subsp. jejuni S3]
          Length = 691

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|218562715|ref|YP_002344494.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|112360421|emb|CAL35218.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
          Length = 691

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|215410176|ref|ZP_03418984.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
 gi|298524120|ref|ZP_07011529.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
 gi|298493914|gb|EFI29208.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
          Length = 543

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLG 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 134 ----------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|229154895|ref|ZP_04283009.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 4342]
 gi|228628453|gb|EEK85166.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 4342]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|228947485|ref|ZP_04109775.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228812005|gb|EEM58336.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 671

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 48/190 (25%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           F E  +  +  +    EQ+ A      ++  + A AGSGKT  +  +   L++    P  
Sbjct: 21  FFEFLKPKNDNNDFNREQVEAIRYNMQKNLRIIAGAGSGKTQTICAKAAYLVMMKDIPEE 80

Query: 65  -LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +  +T TK AA EM  RV+  +                                     
Sbjct: 81  KVAMVTFTKKAAEEMRERVISFLEEERT-------------------------------- 108

Query: 124 ILETPGGLKVQTIHAFCEA----IMQQFPLE--ANITSHFAIADEEQSKKLIEEAKKSTL 177
                  + + T H+F +     + ++FP      +     + + + + KL E  +K +L
Sbjct: 109 ------KVAIGTFHSFFKKLYDELKKRFPYVETIGVNGG-KVDERKYNIKLKELIRKYSL 161

Query: 178 ASIMLDNNEE 187
             +  D  E+
Sbjct: 162 RKLDEDAGEK 171


>gi|157159365|ref|YP_001461444.1| UvrD family helicase [Escherichia coli E24377A]
 gi|157081395|gb|ABV21103.1| helicase, UvrD family [Escherichia coli E24377A]
          Length = 1010

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 58/179 (32%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
            +++Q   E I+    +  ++           V A AG+GKT  L+ +   LL A  A P
Sbjct: 192 LSAYQTFFEQIESQPLSAPQRKACVTNEDHTLVVAGAGTGKTSTLIGKAGYLLQAGLAQP 251

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L L     AA EM+ R+ E +                                    
Sbjct: 252 ENILMLAFGNKAAREMAERITERLP----------------------------------- 276

Query: 123 TILETPGGLKVQTIHAFCEAIMQ-------------------QFPLEANITSHFAIADE 162
              E+ G LK  T HAF   ++                    +  +EA + S  ++ D+
Sbjct: 277 ---ESGGKLKATTFHAFGNRVVAESVGVKRSLTRFAEQNNELRHFIEAKLESEISVNDD 332


>gi|196035398|ref|ZP_03102803.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus W]
 gi|195992075|gb|EDX56038.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus W]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
 gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
          Length = 896

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 43/152 (28%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++        
Sbjct: 26  LVLASPGCGKTHILAERIKYARERGVKYEDMLCLTFTNRAAREMTNRIQKVVGG------ 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN-I 153
                                               L V  +H FC   +     E   I
Sbjct: 80  --------------------------------DFSELMVGNVHRFCSKFL----FEQGRI 103

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            +  AI D+E++  +I + +      +  D N
Sbjct: 104 PADSAIIDDEEAVSIIADYRNEDEEGVTKDFN 135


>gi|307693333|ref|ZP_07635570.1| UvrD/REP family ATP-dependent DNA helicase [Ruminococcaceae
           bacterium D16]
          Length = 699

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++    ++      +    + A  GSGKT +LV R+  L+     P  +L +T+T +AA 
Sbjct: 12  LNLNPQQEDAVQALSGPVLLLAVPGSGKTTVLVSRIGYLIAQGVSPENILTMTYTVSAAR 71

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +MS R          L+D +    I  +  +     + ++ R     + +T     +
Sbjct: 72  DMSRRFASFFGQ--TLADRLEFRTINGVCSRIIRAYERTQGRQAFQLLEDTGRQAAI 126


>gi|296501918|ref|YP_003663618.1| ATP-dependent DNA helicase [Bacillus thuringiensis BMB171]
 gi|296322970|gb|ADH05898.1| ATP-dependent DNA helicase [Bacillus thuringiensis BMB171]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|283850979|ref|ZP_06368264.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283573625|gb|EFC21600.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 1080

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 13/115 (11%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            R   V A  G+GKTH L+ ++  LL A      +L +T T+ AA E+  R+   I A +
Sbjct: 486 GRHLLVVAGPGTGKTHTLLAKIRSLLEAGVPADKILAVTFTRRAAGELRDRLARDIPALA 545

Query: 91  HLS-------------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             +               +  A  T+  G++P       AR L         G +
Sbjct: 546 DGTRTGAAALPRADTLHALALAAWTEAGGREPVLLSEEAARRLFALANPGLAGAR 600


>gi|254726268|ref|ZP_05188050.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. A1055]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|329955597|ref|ZP_08296505.1| ATP-dependent DNA helicase, RecQ family [Bacteroides clarus YIT
            12056]
 gi|328526000|gb|EGF53024.1| ATP-dependent DNA helicase, RecQ family [Bacteroides clarus YIT
            12056]
          Length = 1624

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 90/216 (41%), Gaps = 57/216 (26%)

Query: 9    EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
            ++++    +S+ + E +++   +R   V+A  GSGKT +LV ++  LLL  +     LL 
Sbjct: 1065 KYNQLFGRLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLM 1123

Query: 68   LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            LT ++AAA E   R++E+I   +H  +                                 
Sbjct: 1124 LTFSRAAATEFKQRLMELIGNAAHFVE--------------------------------- 1150

Query: 128  PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                 ++T H++C  ++              I + E+SK ++ +A +      +  N   
Sbjct: 1151 -----IKTFHSYCFDLLG------------RIGNLEESKNVVAKAAEMIYQGEVEPNK-- 1191

Query: 188  LKKAFYEILEISNDEDIET--LISDIISNRTALKLI 221
            + K    +++ + D   E   L+  +++N   +++I
Sbjct: 1192 IGKTVL-VIDEAQDMGTEEHALVKALMANNEEMRVI 1226


>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
 gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
          Length = 892

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 41/161 (25%)

Query: 16  LISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +     QL      +    V A  G GKTHIL +RV            +LCLT T  A
Sbjct: 1   MNNNLDESQLPVIQANKGFHLVLAPPGCGKTHILAERVRYAFSKGIAFEDMLCLTFTNRA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM+ R+  I                                        +    L+V 
Sbjct: 61  AREMTSRIKNIFPN-------------------------------------KDISTLQVG 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            +H FC   + ++     + S  +I DEE++  +I E K  
Sbjct: 84  NVHHFCSKFLFEY---KKVPSDSSIIDEEEAVSIIAEYKNE 121


>gi|228906962|ref|ZP_04070829.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           200]
 gi|228852710|gb|EEM97497.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           200]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETILAMISLEKNKLN 192


>gi|228938446|ref|ZP_04101055.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971325|ref|ZP_04131952.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977936|ref|ZP_04138316.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis Bt407]
 gi|228781724|gb|EEM29922.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis Bt407]
 gi|228788361|gb|EEM36313.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821183|gb|EEM67199.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326938953|gb|AEA14849.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETILAMISLEKNKLN 192


>gi|229068885|ref|ZP_04202179.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus F65185]
 gi|228714169|gb|EEL66050.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus F65185]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|239908585|ref|YP_002955327.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
 gi|239798452|dbj|BAH77441.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
          Length = 1055

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  ++  A    R     A  G+GKTH L+ R+  LL        +L +T T+ AAA++ 
Sbjct: 476 TPDQKRAAETAARHVLTVAGPGTGKTHTLLARIRELLSHGVAADKILAVTFTRRAAAQLR 535

Query: 80  HRVLEIITA----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            R+           +     +  A + +  G +P       AR L    
Sbjct: 536 ERLARDDAGGDIPRADTLHALALAALAEAGGSEPVVLSEDSARRLFDLA 584


>gi|213586292|ref|ZP_03368118.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 275

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 12/170 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
               E+ +     + ++E    L  +A              ++ +  +++
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDV 186


>gi|47569157|ref|ZP_00239844.1| ATP-dependent DNA helicase [Bacillus cereus G9241]
 gi|47554129|gb|EAL12493.1| ATP-dependent DNA helicase [Bacillus cereus G9241]
 gi|324325344|gb|ADY20604.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|229120851|ref|ZP_04250093.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
 gi|228662511|gb|EEL18109.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|198241992|ref|YP_002215008.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197936508|gb|ACH73841.1| helicase IV [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326622761|gb|EGE29106.1| helicase IV [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 684

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADVGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVISK 295


>gi|228920050|ref|ZP_04083399.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839506|gb|EEM84798.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|229195526|ref|ZP_04322294.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1293]
 gi|228588066|gb|EEK46116.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1293]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|229189418|ref|ZP_04316435.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 10876]
 gi|228594009|gb|EEK51811.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 10876]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|228951708|ref|ZP_04113810.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807993|gb|EEM54510.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|218902425|ref|YP_002450259.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH820]
 gi|228926366|ref|ZP_04089438.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228944936|ref|ZP_04107297.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|218536634|gb|ACK89032.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH820]
 gi|228814605|gb|EEM60865.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228833190|gb|EEM78755.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|30019376|ref|NP_831007.1| ATP-dependent DNA helicase [Bacillus cereus ATCC 14579]
 gi|229126637|ref|ZP_04255649.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-Cer4]
 gi|29894919|gb|AAP08208.1| ATP-dependent DNA helicase [Bacillus cereus ATCC 14579]
 gi|228656577|gb|EEL12403.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-Cer4]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|229177744|ref|ZP_04305118.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 172560W]
 gi|228605708|gb|EEK63155.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 172560W]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|206968634|ref|ZP_03229590.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           AH1134]
 gi|218232735|ref|YP_002366011.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus B4264]
 gi|229078522|ref|ZP_04211081.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock4-2]
 gi|229108789|ref|ZP_04238395.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
 gi|229149534|ref|ZP_04277766.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1550]
 gi|206737554|gb|EDZ54701.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           AH1134]
 gi|218160692|gb|ACK60684.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus B4264]
 gi|228633880|gb|EEK90477.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1550]
 gi|228674656|gb|EEL29894.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
 gi|228704747|gb|EEL57174.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock4-2]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|221485205|gb|EEE23495.1| hypothetical protein TGGT1_105110 [Toxoplasma gondii GT1]
          Length = 2892

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           HS+    +S+ +   +LA     +  V A  GSGKT  +  R+LRLLL    P  +L LT
Sbjct: 756 HSKIFGQLSEEQRNVVLAPAHA-NLCVIAGPGSGKTTAITARILRLLLEGEGP--ILALT 812

Query: 70  HTKAAAAEMSHRVLEIITA 88
            T+  A E+  RV++ +++
Sbjct: 813 FTRRGAEELRTRVVDGLSS 831



 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 121  LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            L    +  G + V T H F   +++       +   F +A   +  +L  E  ++ 
Sbjct: 953  LPLFHDLAGRVLVGTFHKFGLLVLRLHGRAVGVPPSFLVATATRQGQLAREVLEAF 1008


>gi|121612511|ref|YP_001000779.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005695|ref|ZP_02271453.1| ATP-dependent DNA helicase, UvrD/REP family protein [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249211|gb|EAQ72172.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 691

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA  M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAANVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|57242258|ref|ZP_00370197.1| DNA helicase II (uvrD) [Campylobacter upsaliensis RM3195]
 gi|57016938|gb|EAL53720.1| DNA helicase II (uvrD) [Campylobacter upsaliensis RM3195]
          Length = 677

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 41/164 (25%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
            + +  +++++ E +   D   +  + A AGSGKT  +  R+  L+        + L LT
Sbjct: 1   MKILQSLNESQKEAVRHID--GAMLILAGAGSGKTKTITTRLAYLIDEVGIPAQSTLTLT 58

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA  M  R LE+I     +                                     
Sbjct: 59  FTNKAAMVMKARALELIRDKEAMPLL---------------------------------- 84

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173
                T H F    ++      +  + F + D +  KK+++E  
Sbjct: 85  ----CTFHKFGLMFLRLHITRLDRKNDFVVIDSDDVKKILKEII 124


>gi|295108272|emb|CBL22225.1| Superfamily I DNA and RNA helicases [Ruminococcus obeum A2-162]
          Length = 591

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 64/189 (33%), Gaps = 57/189 (30%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            V A  GSGKT ++V+R   +       P  +L +T ++AAA EM  R L+         
Sbjct: 1   MVLAGPGSGKTSVIVERTAYMTDEGKIPPENILVVTFSRAAAKEMKERFLKFTG------ 54

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                           +T   +   T H     I++Q       
Sbjct: 55  --------------------------------QTATRVTFGTFHGVFYGILKQAY----- 77

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
              F       +  L EE K   L  ++L+   +L +      E    E+I   IS +  
Sbjct: 78  --GFT-----AANILSEEEKSGILKELILNYGGDLAE------EGDFPEEIAKEISVVKG 124

Query: 214 NRTALKLIF 222
           NR +L+  +
Sbjct: 125 NRISLEYYY 133


>gi|213428018|ref|ZP_03360768.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 254

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 12/170 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
               E+ +     + ++E    L  +A              ++ +  +++
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDV 186


>gi|325066907|ref|ZP_08125580.1| UvrD/REP helicase [Actinomyces oris K20]
          Length = 98

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 4  HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HP 62
          H +  E S  ++ +   + E  +A        V A AG+GKT  +  R+   +   A   
Sbjct: 7  HPAPLEVSRLLEALDPDQRE--VAEHLEGPLCVLAGAGTGKTRAITYRIAHGVATGAYQA 64

Query: 63 STLLCLTHTKAAAAEMSHRVLEI 85
          + +L +T T  AA EM  R+ ++
Sbjct: 65 TQVLAVTFTARAAGEMRSRLADL 87


>gi|288959583|ref|YP_003449924.1| uvrD/REP helicase [Azospirillum sp. B510]
 gi|288911891|dbj|BAI73380.1| uvrD/REP helicase [Azospirillum sp. B510]
          Length = 1054

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 30/126 (23%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V+A+AG+GKTH L +  L  + A   P  +L  T T+ AAAE+  R+            
Sbjct: 12  LVTASAGTGKTHRLTRAYLDAVAAGTAPEAILATTFTRKAAAELLERIR----------- 60

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G +        AR  L          ++ T++A    I   F LEA  +
Sbjct: 61  -----------GGRFEAGLNEAARDALAG--------RIGTVNALFGRIAADFALEAGRS 101

Query: 155 SHFAIA 160
               + 
Sbjct: 102 PVAEVI 107


>gi|218896262|ref|YP_002444673.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus G9842]
 gi|228964277|ref|ZP_04125396.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218541534|gb|ACK93928.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus G9842]
 gi|228795374|gb|EEM42862.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|196042381|ref|ZP_03109647.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           NVH0597-99]
 gi|196026788|gb|EDX65429.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           NVH0597-99]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|118476800|ref|YP_893951.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416025|gb|ABK84444.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
          Length = 688

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETILAMISLEKNKLN 192


>gi|86150915|ref|ZP_01069131.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315124581|ref|YP_004066585.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85842085|gb|EAQ59331.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315018303|gb|ADT66396.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 691

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            HR L  +    +                                           T H 
Sbjct: 68  RHRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|283956498|ref|ZP_06373978.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792218|gb|EFC31007.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 691

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 50/155 (32%), Gaps = 40/155 (25%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
           S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M H
Sbjct: 10  SQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVMRH 69

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R L  +    +                                           T H F 
Sbjct: 70  RALNFLQGNHNPLL---------------------------------------CTFHKFG 90

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
              ++         + F + D + +KK+I++    
Sbjct: 91  LLFLKLHFERLERKNSFIVIDTDDTKKIIKDLIHD 125


>gi|261339289|ref|ZP_05967147.1| hypothetical protein ENTCAN_05527 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319148|gb|EFC58086.1| helicase IV [Enterobacter cancerogenus ATCC 35316]
          Length = 684

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP- 62
              + +   T++      ++     +   S  V A AGSGKT +LV R   LL       
Sbjct: 182 LTQYADFFSTVESSPLNPAQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLTTGEAVA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM  R+   +      +    S  +  IQ        +SK
Sbjct: 242 DQILLLAFGRKAAQEMDERIQSRLHTQDIAARTFHSLALHIIQQGSKKVPVVSK 295


>gi|218194490|gb|EEC76917.1| hypothetical protein OsI_15164 [Oryza sativa Indica Group]
          Length = 684

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH 61
           +H+ FQ    T++      ++     +   S  V A AGSGKT +LV R   LL    A 
Sbjct: 185 HHDFFQ----TVESSPLNDAQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRQEAE 240

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           P  +L L   + AA EM+ R+ E +      +    +  +  IQ        +S+
Sbjct: 241 PGQILLLAFGRQAAGEMNDRIKERLGDVGIQAKTFHALALQIIQQGSRKAPAISR 295


>gi|256825720|ref|YP_003149680.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689113|gb|ACV06915.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547]
          Length = 704

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
              ++ +A++P  +  V A AG+GKT  +  R+   + A A P   +L +T T  AA EM
Sbjct: 12  DPEQRQVAANPVGAMRVLAGAGTGKTRAITHRIAYGVHAGAFPAQQVLAVTFTARAAGEM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
             R+   +      +    +A + ++Q   P
Sbjct: 72  RTRLRG-LGVPGVQARTFHAAALRQLQYFHP 101


>gi|228899910|ref|ZP_04064151.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           4222]
 gi|228859689|gb|EEN04108.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           4222]
          Length = 688

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV ++       S  +++                                    T 
Sbjct: 110 EIRSRVAKLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|171742438|ref|ZP_02918245.1| hypothetical protein BIFDEN_01549 [Bifidobacterium dentium ATCC
           27678]
 gi|283456476|ref|YP_003361040.1| ATP-dependent DNA helicase PcrA [Bifidobacterium dentium Bd1]
 gi|171278052|gb|EDT45713.1| hypothetical protein BIFDEN_01549 [Bifidobacterium dentium ATCC
           27678]
 gi|283103110|gb|ADB10216.1| ATP-dependent DNA helicase PcrA [Bifidobacterium dentium Bd1]
          Length = 502

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 11/140 (7%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           M++ ++    +ETI L     +++  A+       + A AG+GKT  + +R+        
Sbjct: 1   MVHMDA---SAETI-LEGLDDAQRTAATTVNGPVRIIAGAGAGKTRTVTRRIAYACATGE 56

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDM 114
             P   L +T +  AAAEM  R+ ++    +  +    SA + +I+   P+        +
Sbjct: 57  WDPRRALAVTFSVKAAAEMRSRLSQLEVDGAVKAATFHSAALHQIRRVWPDLCEGPFPHI 116

Query: 115 SKA-RHLLITILETPGGLKV 133
           S+  R L+   L     ++V
Sbjct: 117 SRQPRELVARSLRRVTTMQV 136


>gi|206977850|ref|ZP_03238739.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           H3081.97]
 gi|217958806|ref|YP_002337354.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH187]
 gi|222094953|ref|YP_002529013.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|229138019|ref|ZP_04266617.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST26]
 gi|206743947|gb|EDZ55365.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           H3081.97]
 gi|217067646|gb|ACJ81896.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH187]
 gi|221239011|gb|ACM11721.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|228645364|gb|EEL01598.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST26]
          Length = 688

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|168821818|ref|ZP_02833818.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205341743|gb|EDZ28507.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085289|emb|CBY95073.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 684

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVISK 295


>gi|167550134|ref|ZP_02343891.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324737|gb|EDZ12576.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 1181

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 17/186 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
               E  +     + ++E    L  +A              ++ +  +++      +  +
Sbjct: 139 LNAFEFGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDVW-----KGPK 191

Query: 206 TLISDI 211
            L+ DI
Sbjct: 192 ALLKDI 197


>gi|157865050|ref|XP_001681233.1| ATP-dependent DNA helicase [Leishmania major strain Friedlin]
 gi|68124528|emb|CAJ02587.1| putative ATP-dependent DNA helicase [Leishmania major strain
           Friedlin]
          Length = 996

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 44/182 (24%)

Query: 20  TKSEQLLASDPTRSAWVS-ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            +S+   A+ P  +A +  A AGSGKT  +  R+  LL +     ++L +  T+ AA  +
Sbjct: 2   DESQIRAATYPADAALILQAGAGSGKTQTMAARIAYLLQSGVPGHSILGICFTRQAAETL 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV   +                                    T+      LK++T HA
Sbjct: 62  RGRVRSTLP----------------------------------PTLTREAHALKLKTFHA 87

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           F    +++F     + +   + D  Q  +L      +          E+  +A  ++++ 
Sbjct: 88  FGLECLRRFGA---LQADTHVLDARQQHQLARRVVDT------YAQREKSSEAVTDLVDY 138

Query: 199 SN 200
            N
Sbjct: 139 VN 140


>gi|228913901|ref|ZP_04077526.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845840|gb|EEM90866.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 688

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|49184166|ref|YP_027418.1| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. Sterne]
 gi|65318602|ref|ZP_00391561.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165872859|ref|ZP_02217485.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0488]
 gi|167636108|ref|ZP_02394413.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0442]
 gi|167641230|ref|ZP_02399484.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0193]
 gi|170686685|ref|ZP_02877905.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0465]
 gi|170708869|ref|ZP_02899303.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0389]
 gi|177654409|ref|ZP_02936306.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0174]
 gi|190568743|ref|ZP_03021647.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815925|ref|YP_002815934.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. CDC 684]
 gi|229183529|ref|ZP_04310753.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BGSC 6E1]
 gi|229601581|ref|YP_002865755.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0248]
 gi|254734022|ref|ZP_05191736.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740289|ref|ZP_05197980.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753675|ref|ZP_05205710.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Vollum]
 gi|254758771|ref|ZP_05210798.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Australia 94]
 gi|49178093|gb|AAT53469.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. Sterne]
 gi|164711436|gb|EDR16987.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0488]
 gi|167510871|gb|EDR86263.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0193]
 gi|167528462|gb|EDR91227.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0442]
 gi|170126185|gb|EDS95078.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0389]
 gi|170669208|gb|EDT19951.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0465]
 gi|172080693|gb|EDT65775.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0174]
 gi|190560159|gb|EDV14140.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004776|gb|ACP14519.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. CDC 684]
 gi|228599939|gb|EEK57535.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BGSC 6E1]
 gi|229265989|gb|ACQ47626.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0248]
          Length = 688

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|72160927|ref|YP_288584.1| ATP-dependent DNA helicase [Thermobifida fusca YX]
 gi|71914659|gb|AAZ54561.1| putative ATP-dependent DNA helicase [Thermobifida fusca YX]
          Length = 1044

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 53/176 (30%), Gaps = 40/176 (22%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
              ++ +         V A  G+GKT  +V+ ++  +      P+ +L LT ++ AA E+
Sbjct: 22  DDDQRRVVDHEGGPLLVLAGPGTGKTTTIVEAIVDRVENRGVDPAHVLVLTFSRKAAQEL 81

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +         +                                      T H+
Sbjct: 82  RERITARLRRTVREPLAL--------------------------------------TFHS 103

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           +  A++++            +    +    + E  K  LA       E+L+   + 
Sbjct: 104 YAYALIRREFQRVG-DHAPRLLSGPEQLMEVRELLKGELADGAPGWPEQLRPMLHT 158


>gi|110639638|ref|YP_679848.1| DNA-dependent ATPase I and helicase II [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282319|gb|ABG60505.1| DNA-dependent ATPase I and helicase II [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1041

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 43/166 (25%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTH 70
           + +++  + Q  A +       V A  G+GKT IL  R+ ++L +      P  +LCLT 
Sbjct: 14  EQLARLNTAQREAVETIEGPVLVIAGPGTGKTQILSARIGKILASPDLQVQPHNILCLTF 73

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+A    M  R+L+ I   +                                        
Sbjct: 74  TEAGTVAMRKRLLDFIGPEA--------------------------------------YR 95

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + V T H FC  ++Q+      +  +     E ++ +L ++   + 
Sbjct: 96  VHVYTFHGFCNQVIQENLDYFGVR-NLQPISELETIELYQKLIDNF 140


>gi|311743795|ref|ZP_07717601.1| excision endonuclease subunit UvrD [Aeromicrobium marinum DSM
          15272]
 gi|311312925|gb|EFQ82836.1| excision endonuclease subunit UvrD [Aeromicrobium marinum DSM
          15272]
          Length = 686

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          L      +Q +A        V A AG+GKT  +  R+   +      P+ +L +T T  A
Sbjct: 8  LRGLDPEQQAVARALRGPVCVIAGAGTGKTRAVTHRIAYGVATGVYKPTEVLAVTFTTRA 67

Query: 75 AAEMSHRVLEI 85
          A EM  R+  +
Sbjct: 68 AGEMRTRLGAL 78


>gi|312194652|ref|YP_004014713.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225988|gb|ADP78843.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 733

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          D       ++     P     + A AG+GKT  + +R+  L         +L +T T  A
Sbjct: 30 DGWGLDPEQRAAVFAPVGPVCILAGAGTGKTRTITRRIAHLTGQGVPGGQVLAVTFTTRA 89

Query: 75 AAEMSHRVL 83
          A E+  R+ 
Sbjct: 90 AGELRARLR 98


>gi|328752848|gb|EGF66464.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL025PA2]
          Length = 1078

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDDYLAQYLDCD 165


>gi|295394604|ref|ZP_06804823.1| excision endonuclease subunit UvrD [Brevibacterium mcbrellneri
          ATCC 49030]
 gi|294972497|gb|EFG48353.1| excision endonuclease subunit UvrD [Brevibacterium mcbrellneri
          ATCC 49030]
          Length = 678

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCL 68
           +E +D  +    ++ + +       V A AG+GKT  +  R+         P   +L L
Sbjct: 1  MNELLD--NLDPEQREVVTHEGGPLVVLAGAGTGKTRAITHRIAHGAHTGHLPAHHVLAL 58

Query: 69 THTKAAAAEMSHRVL 83
          T T  AA EM  R+ 
Sbjct: 59 TFTAKAAGEMRSRLR 73


>gi|225863179|ref|YP_002748557.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           03BB102]
 gi|225786754|gb|ACO26971.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           03BB102]
          Length = 688

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|153814540|ref|ZP_01967208.1| hypothetical protein RUMTOR_00754 [Ruminococcus torques ATCC
          27756]
 gi|145848034|gb|EDK24952.1| hypothetical protein RUMTOR_00754 [Ruminococcus torques ATCC
          27756]
          Length = 608

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +   K++            V A  GSGKT  +V R+  L+      P  +L +T T+ AA
Sbjct: 1  MGFNKAQNEAIMHGKGPCQVLAGPGSGKTLTIVNRIKYLIERYEVRPEEILVVTFTRFAA 60

Query: 76 AEMSHRVLEIITA 88
          AEM  R+  ++  
Sbjct: 61 AEMKSRLCSLMGK 73


>gi|326203600|ref|ZP_08193464.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
 gi|325986420|gb|EGD47252.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
          Length = 695

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 57/200 (28%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ++    +  ++           + A  GSGKT ++V RV  L+ +  +P ++L LT  KA
Sbjct: 8   MEFKDLSHEQREAVLTVEGPVLLIAGPGSGKTTVIVNRVYNLIKSGINPKSILTLTFNKA 67

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A  EM  R  +   +  +   +                                      
Sbjct: 68  AQLEMDRRFKKYYGSRINEKVQFA------------------------------------ 91

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAF 192
            T+H+FC  +++ +                  + +  ++ +        ++    LK  +
Sbjct: 92  -TLHSFCNRVVRGY------------------ETMKGQSLRRIEGTEEDINKKMLLKDMY 132

Query: 193 YEILEIS-NDEDIETLISDI 211
           Y I     +D++++ LI++I
Sbjct: 133 YSIYSAKISDDELDNLINEI 152


>gi|331697795|ref|YP_004334034.1| exodeoxyribonuclease V subunit beta [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952484|gb|AEA26181.1| exodeoxyribonuclease V, beta subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 1137

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 15/156 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ +     R +    A  + L+ +T  + A  E+  RV E +TA     
Sbjct: 29  VLEASAGTGKTYTIAALAARYVAEGIATLAELMLVTFGREATHELRERVRERLTAAERAL 88

Query: 94  DEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
            +  +A +            + + ++  R  L   +       + T H FC+ ++     
Sbjct: 89  ADPAAARVAADGVLRHLAAADAATVALRRERLRLAVAEFDAATIATTHQFCQRML----- 143

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            A +     +  +     L  E+    +  ++ D  
Sbjct: 144 -AGLG----VLGDADPDALFVESVDDLVEEVVDDFY 174


>gi|317500583|ref|ZP_07958804.1| hypothetical protein HMPREF1026_00747 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316898016|gb|EFV20066.1| hypothetical protein HMPREF1026_00747 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 608

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +   K++            V A  GSGKT  +V R+  L+      P  +L +T T+ AA
Sbjct: 1  MGFNKAQNEAIMHGKGPCQVLAGPGSGKTLTIVNRIKYLIERYEVRPEEILVVTFTRFAA 60

Query: 76 AEMSHRVLEIITA 88
          AEM  R+  ++  
Sbjct: 61 AEMKSRLCSLMGK 73


>gi|229090274|ref|ZP_04221519.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-42]
 gi|228693054|gb|EEL46770.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-42]
          Length = 681

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|200391065|ref|ZP_03217676.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603510|gb|EDZ02056.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 684

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVISK 295


>gi|161614730|ref|YP_001588695.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161364094|gb|ABX67862.1| hypothetical protein SPAB_02482 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 684

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVISK 295


>gi|111225382|ref|YP_716176.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152914|emb|CAJ64662.1| Putative ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 769

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
             ++  A  P     + A AG+GKT  +  R+  +++        +L ++ T  AA E+ 
Sbjct: 56  PEQRAAADAPLGPVCILAGAGTGKTRTITHRIAHMVVDRGVGSGQILAVSFTTRAAGELR 115

Query: 80  HRVL 83
            R+ 
Sbjct: 116 GRLR 119


>gi|30261334|ref|NP_843711.1| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. Ames]
 gi|47777916|ref|YP_017853.2| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30255188|gb|AAP25197.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. Ames]
 gi|47551621|gb|AAT30328.2| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. 'Ames Ancestor']
          Length = 657

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 19  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 78

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 79  EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 103

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 104 HSVFLKLLRS 113


>gi|268590116|ref|ZP_06124337.1| helicase IV [Providencia rettgeri DSM 1131]
 gi|291314385|gb|EFE54838.1| helicase IV [Providencia rettgeri DSM 1131]
          Length = 683

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 11/128 (8%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           YH+ FQ+    ++      S+ L   +   +  V A AGSGKT +LV R   L+L   A 
Sbjct: 185 YHDFFQQ----VETSPLNYSQSLSVINGEDNVLVLAGAGSGKTSVLVARAGWLILRGLAK 240

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMS 115
           P  +L L   + AA EM+ R+   +        +  L+  I+     K       ++D  
Sbjct: 241 PEQILLLAFGRKAADEMNGRIHSRLQQDIEAKTFHALALHIIREGSKKSPVISELETDTQ 300

Query: 116 KARHLLIT 123
           K + LL+ 
Sbjct: 301 KRQTLLLN 308


>gi|239929060|ref|ZP_04686013.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 1114

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 39/117 (33%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           T    V A  G+GKT  LV+ V   +     P  +L LT ++ AA E+  R+   + A  
Sbjct: 6   TGPLLVLAGPGTGKTTTLVESVAARIARGGDPERVLVLTFSRRAAVELRDRMALRMGAAR 65

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                                                    +  T H+FC A+++  
Sbjct: 66  AP---------------------------------------RATTFHSFCYALIRAH 83


>gi|238911102|ref|ZP_04654939.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 684

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVISK 295


>gi|282853722|ref|ZP_06263059.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes J139]
 gi|282583175|gb|EFB88555.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes J139]
 gi|314983235|gb|EFT27327.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL110PA3]
 gi|315090103|gb|EFT62079.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL110PA4]
          Length = 1078

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSIIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDCD 165


>gi|229171974|ref|ZP_04299539.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus MM3]
 gi|228611317|gb|EEK68574.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus MM3]
          Length = 688

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNRAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|210615926|ref|ZP_03290849.1| hypothetical protein CLONEX_03068 [Clostridium nexile DSM 1787]
 gi|210150019|gb|EEA81028.1| hypothetical protein CLONEX_03068 [Clostridium nexile DSM 1787]
          Length = 610

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
          +S   S+            V A  GSGKT  + +R+  L+   +  P  +L +T TKAA+
Sbjct: 1  MSLNPSQVQAVIHKDGPCMVLAGPGSGKTLTITKRIEYLIGKHHVSPEEILVITFTKAAS 60

Query: 76 AEMSHRVLEIITAWS 90
           EM  R + +    +
Sbjct: 61 IEMKERFVRLCGQKA 75


>gi|229028999|ref|ZP_04185098.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1271]
 gi|228732279|gb|EEL83162.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1271]
          Length = 688

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNRAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|197251093|ref|YP_002145945.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197214796|gb|ACH52193.1| helicase IV [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 684

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVISK 295


>gi|331089316|ref|ZP_08338217.1| hypothetical protein HMPREF1025_01800 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330405497|gb|EGG85029.1| hypothetical protein HMPREF1025_01800 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 608

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +   K++            V A  GSGKT  +V R+  L+      P  +L +T T+ AA
Sbjct: 1  MGFNKAQNEAIMHGKGPCQVLAGPGSGKTLTIVNRIKYLIERYEVRPEEILVVTFTRFAA 60

Query: 76 AEMSHRVLEIITA 88
          AEM  R+  ++  
Sbjct: 61 AEMKSRLCSLMGK 73


>gi|294673137|ref|YP_003573753.1| UvrD/Rep helicase family protein [Prevotella ruminicola 23]
 gi|294471939|gb|ADE81328.1| UvrD/Rep helicase family protein [Prevotella ruminicola 23]
          Length = 1099

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 22/141 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           ++A AGSGKT  L + + + L        PS ++  T TK AA+E   +  E++      
Sbjct: 7   INAGAGSGKTTELTKILAKELCKKDGRIKPSEVILTTFTKLAASEFRQKAREVLYE---- 62

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                     KI+ +  N +     +  L  I        +  +H+   + +Q++   A 
Sbjct: 63  ----------KIKNEPDNDT-----KKQLSDIANQMDAATIGDVHSVSLSFIQKYWYLAG 107

Query: 153 ITSHFAIADEEQSKKLIEEAK 173
           I+    +  E+  +  I ++ 
Sbjct: 108 ISPDAKVMSEDDMQIYISQSL 128


>gi|168264164|ref|ZP_02686137.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205347347|gb|EDZ33978.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 684

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARASWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|301052870|ref|YP_003791081.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300375039|gb|ADK03943.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 688

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNYAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|293376027|ref|ZP_06622280.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645328|gb|EFF63385.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 726

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 62/210 (29%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           Y N + +   T D ++ T+     A D      V +  GSGKT + V R+  L+L+   H
Sbjct: 6   YLNQYHQIVLTDDQLAATQ-----ALD--GPICVISCPGSGKTTVTVIRLANLILSGKVH 58

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P  +L LT +KA+A +M+ R   +    S                               
Sbjct: 59  PQQILALTFSKASARDMNERFQALFPKLSK------------------------------ 88

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                    ++  TIH+F   +++ +   + +   F    E     L +   K  L    
Sbjct: 89  --------QVQFSTIHSFAFQLIKHYQQLSGVMYQFI---EGNQTTLHK---KQLLTQFY 134

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++  E             +D+D+ETL   I
Sbjct: 135 IETTE----------RYPSDDDLETLTGQI 154


>gi|257453822|ref|ZP_05619100.1| UvrD/REP helicase [Enhydrobacter aerosaccus SK60]
 gi|257448749|gb|EEV23714.1| UvrD/REP helicase [Enhydrobacter aerosaccus SK60]
          Length = 1504

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L   +LRL++    P   ++  T T++AAAEM  R+ E +  +  L 
Sbjct: 56  LIEASAGTGKTWTLTGVMLRLIVQAGQPCEKIIATTFTRSAAAEMRQRIRERLQDFYQLL 115

Query: 94  DEILSAEITKIQGKKPNKS 112
             I  +  T +     + S
Sbjct: 116 QMINHSTFTPLNDSDLDSS 134



 Score = 41.8 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 108 KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS-- 165
             N  +   A       L     L V T+ + C+  ++++  E   ++   I+++     
Sbjct: 217 AKNTVNFRIALQRTTLALNQLDRLFVSTLDSLCQKWLREYSSETGFSAEVQISNDVSGII 276

Query: 166 KKLIEEAKKSTLASIMLDNNE 186
           K +I +  ++ +A +  +  E
Sbjct: 277 KGMIHDQIRAFMAQVNANMPE 297


>gi|229160287|ref|ZP_04288286.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus R309803]
 gi|228623248|gb|EEK80075.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus R309803]
          Length = 688

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 62/202 (30%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E
Sbjct: 51  LNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEE 110

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           + +RV  +       S  +++                                    T H
Sbjct: 111 IRNRVANLPGMNRAASSYVVA-----------------------------------GTFH 135

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +    +++       I     +A+E+  + +I++  K                     L 
Sbjct: 136 SVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------LR 170

Query: 198 ISNDEDIETLISDIISNRTALK 219
           + +D D ET+++ I   +  L 
Sbjct: 171 LKDDYDAETILAMISLEKNKLN 192


>gi|213647171|ref|ZP_03377224.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
          Length = 689

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|16759956|ref|NP_455573.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29142272|ref|NP_805614.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213417511|ref|ZP_03350653.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213851965|ref|ZP_03381497.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|289826785|ref|ZP_06545720.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25290789|pir||AF0627 helicase IV (75 kD helicase) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16502250|emb|CAD08201.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137902|gb|AAO69463.1| helicase IV [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 684

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|213022413|ref|ZP_03336860.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 374

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 12/170 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
            + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
           I           S +           SD  +A   L+          V TIH FC+ ++ 
Sbjct: 80  IHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLS 138

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
               E+ +     + ++E    L  +A              ++ +  +++
Sbjct: 139 LNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLPRDIAQVVFDV 186


>gi|148272380|ref|YP_001221941.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830310|emb|CAN01244.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 637

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPST 64
           S +   E +D       ++L A        V A AG+GKT  +  R+   + A    P+ 
Sbjct: 43  SAESLLEALD-----DQQRLAAEALLGPVVVLAGAGTGKTRAITHRIAYGIQAGVYPPNR 97

Query: 65  LLCLTHTKAAAAEMSHRVLEI 85
           ++ LT T  AAAE+  R+ E+
Sbjct: 98  VMALTFTSRAAAELRGRLREL 118


>gi|307703404|ref|ZP_07640346.1| exonuclease RexA [Streptococcus oralis ATCC 35037]
 gi|307622811|gb|EFO01806.1| exonuclease RexA [Streptococcus oralis ATCC 35037]
          Length = 139

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
          T  +        ++  VSA+AGSGKT ++ +R+L  L      S L   T T  AA E+ 
Sbjct: 29 TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88

Query: 80 HRVLEI 85
           R+ + 
Sbjct: 89 ERLEKK 94


>gi|224371767|ref|YP_002605931.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum
            HRM2]
 gi|223694484|gb|ACN17767.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum
            HRM2]
          Length = 1740

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 6    SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
            + + + + I  +     E ++A+ P ++  V A  GSGKT  +V R   L+   +  P++
Sbjct: 1102 TAEAYKKIIQSLEDHTQEAIVAASPEKNILVLAGPGSGKTRTIVHRCAWLIKAKSIDPAS 1161

Query: 65   LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
            +L L     A  E+  R+  +    ++ 
Sbjct: 1162 ILVLCFNHQAMIELRKRIRALTGRSANA 1189


>gi|146311131|ref|YP_001176205.1| DNA helicase IV [Enterobacter sp. 638]
 gi|145318007|gb|ABP60154.1| UvrD/REP helicase [Enterobacter sp. 638]
          Length = 684

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      ++     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEATAEQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ + +      +    +  +  IQ        +SK
Sbjct: 252 KAAQEMDERIHDRLHTRDITARTFHALALHIIQQGSKKAPVISK 295


>gi|119715752|ref|YP_922717.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536413|gb|ABL81030.1| ATP-dependent DNA helicase, Rep family [Nocardioides sp. JS614]
          Length = 688

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           L +    ++ +A        V A AG+GKT  +  R+   + +  + P+ +L +T T  A
Sbjct: 8   LTALDPEQRQVAEALRGPVRVLAGAGTGKTRAITHRIAYGVASGVYAPTEVLAVTFTTRA 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
           A EM  R+   + A    +    SA + +++   P
Sbjct: 68  AGEMRSRLR-ALGAGPVQARTFHSAALRQLRYFWP 101


>gi|314918017|gb|EFS81848.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL050PA1]
 gi|314920393|gb|EFS84224.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL050PA3]
          Length = 1078

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDCD 165


>gi|313819374|gb|EFS57088.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL046PA2]
          Length = 1078

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDCD 165


>gi|327329917|gb|EGE71671.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
           HL097PA1]
          Length = 1078

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDCD 165


>gi|313792364|gb|EFS40463.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL110PA1]
          Length = 1078

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDCD 165


>gi|296130306|ref|YP_003637556.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022121|gb|ADG75357.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 670

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
           +D +     ++ +A+  T    V A AG+GKT  +  R+   +      P+++L +T T
Sbjct: 6  LLDALD--PEQRAVATALTGPVCVLAGAGTGKTRAITHRIAYGVRTGVYRPASVLAVTFT 63

Query: 72 KAAAAEMSHRVLEI 85
            AA EM  R+ ++
Sbjct: 64 ARAAGEMRVRLRDL 77


>gi|325844620|ref|ZP_08168263.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489045|gb|EGC91432.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 726

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 62/210 (29%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61
           Y N + +   T D ++ T+     A D      V +  GSGKT + V R+  L+L+   H
Sbjct: 6   YLNQYHQIVLTDDQLAATQ-----ALD--GPICVISCPGSGKTTVTVIRLANLILSGKVH 58

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P  +L LT +KA+A +M+ R   +    S                               
Sbjct: 59  PQQILALTFSKASARDMNERFQALFPKLSK------------------------------ 88

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                    ++  TIH+F   +++ +   + +   F    E     L +   K  L    
Sbjct: 89  --------QVQFSTIHSFAFQLIKHYQQLSGVMYQFI---EGNQTTLHK---KQLLTQFY 134

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDI 211
           ++  E             +D+D+ETL   I
Sbjct: 135 IETTE----------RYPSDDDLETLTGQI 154


>gi|291460344|ref|ZP_06599734.1| exonuclease RexA [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417099|gb|EFE90818.1| exonuclease RexA [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 433

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 75/185 (40%), Gaps = 29/185 (15%)

Query: 18  SQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           S ++ ++     +   +  + A  G GKT +L +R+L  + A    S+ L L  T+ A  
Sbjct: 7   SWSEQQKRDYIQNAEDNLLIIAGPGIGKTTLLSRRILSQIKAGEKLSSFLLLAFTREAVR 66

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E   ++ + +                ++ G+    + + K+R  L  I       ++QTI
Sbjct: 67  EFRRKIRKHLYR--------------ELNGESRGNALLQKSRQKLSEI-------RIQTI 105

Query: 137 HAFCEAIMQQFPLEANIT-----SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           ++FC  +++ +  E +I          + +  + +  + E  +     I  D  ++L + 
Sbjct: 106 YSFCRWVLETYTEE-DIPARRELPG-RVLELLRERPELMERLRRRFRKIYADELQDLDRV 163

Query: 192 FYEIL 196
              +L
Sbjct: 164 QQRLL 168


>gi|71652927|ref|XP_815111.1| ATP-dependent DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70880140|gb|EAN93260.1| ATP-dependent DNA helicase, putative [Trypanosoma cruzi]
          Length = 834

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 48/218 (22%)

Query: 16  LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           L+S     Q  A   D + S  + A AGSGKT  +  R+  ++L       +L L  ++ 
Sbjct: 29  LVSALDEAQRAAVCEDTSASLLILAGAGSGKTLTMASRIAYIILTGVAAEKILGLCFSRQ 88

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA  +  RV  ++                                    ++      LK+
Sbjct: 89  AAEALRERVATVLP----------------------------------PSMAAHVQRLKL 114

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           +T HAF    +++      I     + D  + ++L     ++         + +  +A  
Sbjct: 115 KTFHAFGLECLRRHGC---IDLATEVYDARRQRELASAVVEA------YAVHHKGLEAVL 165

Query: 194 EILEISNDEDIETLIS---DIISNRTALKLIFFFFSYL 228
            ++E  N    +  +    +I  +R A  L  F+ + L
Sbjct: 166 ALVEYVNKAKTKKDMRAGTEIDPSRQAAYLFRFYQAML 203


>gi|314960470|gb|EFT04572.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL002PA2]
 gi|315085342|gb|EFT57318.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL002PA3]
          Length = 1078

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDCD 165


>gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 896

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 43/152 (28%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++        
Sbjct: 26  LVLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVVGG------ 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN-I 153
                                               L V  +H FC   +     E   I
Sbjct: 80  --------------------------------DFSELMVGNVHRFCSKFL----FEQGRI 103

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            +  AI D+E++  +I + +      +  D N
Sbjct: 104 PADSAIIDDEEAVSIIADYRNEDEEGVTRDFN 135


>gi|213425898|ref|ZP_03358648.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
          Length = 662

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|62179597|ref|YP_216014.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62127230|gb|AAX64933.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322714066|gb|EFZ05637.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 684

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARTGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|322616449|gb|EFY13358.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619700|gb|EFY16575.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622604|gb|EFY19449.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629753|gb|EFY26528.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632525|gb|EFY29271.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636980|gb|EFY33683.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641480|gb|EFY38118.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646053|gb|EFY42569.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649645|gb|EFY46076.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654054|gb|EFY50377.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658586|gb|EFY54848.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663443|gb|EFY59645.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322670179|gb|EFY66319.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322671415|gb|EFY67537.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676771|gb|EFY72838.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682695|gb|EFY78714.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686375|gb|EFY82357.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195131|gb|EFZ80313.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199814|gb|EFZ84903.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202807|gb|EFZ87843.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209078|gb|EFZ94015.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323217962|gb|EGA02677.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222407|gb|EGA06784.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226567|gb|EGA10772.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229763|gb|EGA13886.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323232988|gb|EGA17084.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240723|gb|EGA24765.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243039|gb|EGA27060.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249798|gb|EGA33700.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252730|gb|EGA36568.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323259967|gb|EGA43595.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268033|gb|EGA51512.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269881|gb|EGA53330.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 684

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|56413928|ref|YP_151003.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362851|ref|YP_002142488.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56128185|gb|AAV77691.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094328|emb|CAR59840.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 684

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|205352230|ref|YP_002226031.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205272011|emb|CAR36855.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627275|gb|EGE33618.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 684

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|194446484|ref|YP_002040278.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194405147|gb|ACF65369.1| helicase IV [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 684

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|16764434|ref|NP_460049.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167994904|ref|ZP_02575994.1| helicase IV [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168243865|ref|ZP_02668797.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168467516|ref|ZP_02701353.1| helicase IV [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194451210|ref|YP_002045077.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|207856420|ref|YP_002243071.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|16419590|gb|AAL20008.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194409514|gb|ACF69733.1| helicase IV [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|195630104|gb|EDX48756.1| helicase IV [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|205327314|gb|EDZ14078.1| helicase IV [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205337241|gb|EDZ24005.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|206708223|emb|CAR32523.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261246292|emb|CBG24100.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992828|gb|ACY87713.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157619|emb|CBW17111.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912066|dbj|BAJ36040.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|323129343|gb|ADX16773.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 684

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|224584418|ref|YP_002638216.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468945|gb|ACN46775.1| helicase IV [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
          Length = 684

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|218752276|ref|ZP_03531072.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis GM
           1503]
 gi|289760753|ref|ZP_06520131.1| exodeoxyribonuclease V beta chain [Mycobacterium tuberculosis GM
           1503]
 gi|289708259|gb|EFD72275.1| exodeoxyribonuclease V beta chain [Mycobacterium tuberculosis GM
           1503]
          Length = 547

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GKT  L   V R L   A     +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLG 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 134 ----------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|168237129|ref|ZP_02662187.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735557|ref|YP_002114075.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194711059|gb|ACF90280.1| helicase IV [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289865|gb|EDY29226.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 684

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|226330641|ref|ZP_03806159.1| hypothetical protein PROPEN_04561 [Proteus penneri ATCC 35198]
 gi|225201436|gb|EEG83790.1| hypothetical protein PROPEN_04561 [Proteus penneri ATCC 35198]
          Length = 333

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 3/134 (2%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
            N   E   TI+     +S+     +   +  V A AGSGKT +LV R   LL    A P
Sbjct: 88  LNEHAEFFNTIESSPLNESQCRAVINGEENILVLAGAGSGKTSVLVARAGWLLRRQLAQP 147

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             +L L   + AA EM+ R+   + +   +     +  + I +   K+P  S++      
Sbjct: 148 DQILLLAFGRKAAQEMNERLSSRLNSDIMAKTFHALALSIIQQATKKQPKISELEINSEK 207

Query: 121 LITILETPGGLKVQ 134
             T+L      + Q
Sbjct: 208 RRTLLLGEWRAQCQ 221


>gi|196047656|ref|ZP_03114862.1| ATP-dependent DNA helicase [Bacillus cereus 03BB108]
 gi|196021525|gb|EDX60226.1| ATP-dependent DNA helicase [Bacillus cereus 03BB108]
          Length = 263

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 62/203 (30%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+    +++       I     +A+E+  + +I++  K                     L
Sbjct: 135 HSVFLKLLRSQGYNQQI-----LANEKHKQIMIKKILKE--------------------L 169

Query: 197 EISNDEDIETLISDIISNRTALK 219
            + +D D ET+++ I   +  L 
Sbjct: 170 RLKDDYDAETMLAMISLEKNKLN 192


>gi|309810393|ref|ZP_07704227.1| HRDC domain protein [Dermacoccus sp. Ellin185]
 gi|308435633|gb|EFP59431.1| HRDC domain protein [Dermacoccus sp. Ellin185]
          Length = 708

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
          L      ++ +A++P     V A AG+GKT  +  R+   + + A      L +T T  A
Sbjct: 10 LAGLDPQQREVAANPLGPMVVLAGAGTGKTRAITHRIAYGVHSGALVGQRTLAVTFTARA 69

Query: 75 AAEMSHRVLEI 85
          A EM  R+ E+
Sbjct: 70 AGEMRTRLREL 80


>gi|197261861|ref|ZP_03161935.1| helicase IV [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197240116|gb|EDY22736.1| helicase IV [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
          Length = 684

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|226951858|ref|ZP_03822322.1| exonuclease V, beta chain [Acinetobacter sp. ATCC 27244]
 gi|226837398|gb|EEH69781.1| exonuclease V, beta chain [Acinetobacter sp. ATCC 27244]
          Length = 1237

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P+ ++  T T+AAAAE+  R+   +       +
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPNQVIATTFTRAAAAELKSRIRARLIEVQQYLE 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHL-------------LITILETPGGLKVQTIHAFCE 141
            + +   + I  +   +SD  K   L             L  +++    L V T+ +F +
Sbjct: 82  PMRTVLESDIYIRAAQESDPLKQHLLKTFAPRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I   E +K    +     L   +    + +  A Y +  + + 
Sbjct: 142 KLLREFAFESGKIERAQIT--EDAKAYTRQLIHDVLREWIQSQPQHVIDALYSVGALKSV 199

Query: 202 EDIETLISDIIS 213
           +    ++   ++
Sbjct: 200 DHFFGMVESALN 211


>gi|225375304|ref|ZP_03752525.1| hypothetical protein ROSEINA2194_00929 [Roseburia inulinivorans
          DSM 16841]
 gi|225212793|gb|EEG95147.1| hypothetical protein ROSEINA2194_00929 [Roseburia inulinivorans
          DSM 16841]
          Length = 611

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            S+              A  GSGKT ++ +R   L+   + +PS +L +T TKAAA EM
Sbjct: 6  NDSQVKAIGHFNGPCLTLAGPGSGKTAVITERTKNLITKYHVNPSNILVITFTKAAALEM 65

Query: 79 SHRVLEIITAWS 90
            R L ++   S
Sbjct: 66 KTRFLSLMGNGS 77


>gi|289425055|ref|ZP_06426832.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes SK187]
 gi|289428108|ref|ZP_06429811.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes J165]
 gi|289154033|gb|EFD02721.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes SK187]
 gi|289158708|gb|EFD06909.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes J165]
 gi|313764138|gb|EFS35502.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL013PA1]
 gi|313801688|gb|EFS42928.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL110PA2]
 gi|313807180|gb|EFS45673.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL087PA2]
 gi|313812637|gb|EFS50351.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL025PA1]
 gi|313816231|gb|EFS53945.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL059PA1]
 gi|313820638|gb|EFS58352.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL036PA1]
 gi|313822557|gb|EFS60271.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL036PA2]
 gi|313825509|gb|EFS63223.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL063PA1]
 gi|313838402|gb|EFS76116.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL086PA1]
 gi|314914868|gb|EFS78699.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL005PA4]
 gi|314924882|gb|EFS88713.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL036PA3]
 gi|314929979|gb|EFS93810.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL067PA1]
 gi|314956485|gb|EFT00773.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL027PA1]
 gi|314957329|gb|EFT01432.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL002PA1]
 gi|314962483|gb|EFT06583.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL082PA1]
 gi|314967652|gb|EFT11751.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL037PA1]
 gi|314978135|gb|EFT22229.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL072PA2]
 gi|314986293|gb|EFT30385.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL005PA2]
 gi|314989620|gb|EFT33711.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL005PA3]
 gi|315077699|gb|EFT49750.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL053PA2]
 gi|315080861|gb|EFT52837.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL078PA1]
 gi|315084657|gb|EFT56633.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL027PA2]
 gi|315088598|gb|EFT60574.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL072PA1]
 gi|315098845|gb|EFT70821.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL059PA2]
 gi|315101556|gb|EFT73532.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL046PA1]
 gi|327327128|gb|EGE68907.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
           HL096PA3]
 gi|327443753|gb|EGE90407.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL013PA2]
 gi|327452209|gb|EGE98863.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL087PA3]
 gi|327452692|gb|EGE99346.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL083PA2]
 gi|327453450|gb|EGF00105.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL092PA1]
 gi|328753885|gb|EGF67501.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL087PA1]
 gi|328754853|gb|EGF68469.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL020PA1]
          Length = 1078

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDCD 165


>gi|229101910|ref|ZP_04232624.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-28]
 gi|228681493|gb|EEL35656.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-28]
          Length = 688

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV  +       S  +++                                    T 
Sbjct: 110 EIRSRVANLPGMNRAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|225351572|ref|ZP_03742595.1| hypothetical protein BIFPSEUDO_03169 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225157916|gb|EEG71199.1| hypothetical protein BIFPSEUDO_03169 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 580

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19 QTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
          +   EQ+   +    +  V A AG+GKT  +V  +  LL    A P  +L L+ TKA+A 
Sbjct: 21 ELSDEQISAIAGAGHNTLVLAGAGTGKTTTIVGYIAWLLNTGTATPEEILVLSFTKASAD 80

Query: 77 EMSHRVLEIITA 88
          EMS R+ +    
Sbjct: 81 EMSSRITQSTGK 92


>gi|213622020|ref|ZP_03374803.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 513

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 21  IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 80

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 81  KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 124


>gi|289177396|gb|ADC84642.1| Probable DNA helicase II-like protein [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 588

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L +   +++  A        + A AG+GKT  + +R+     +    P+ +L +T +  A
Sbjct: 93  LATLDDAQRSAALAVDGPVRIIAVAGAGKTRTITRRIAYACASGVWDPTRVLAVTFSVKA 152

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETP 128
           A EM  R+  +       +    SA + +++   P+               L+   L   
Sbjct: 153 ANEMRERLDALQVPRGVRASTFHSAALRQMREVWPDICEGPFPDVTEDKSALVAQALYRF 212

Query: 129 GGLK 132
            G++
Sbjct: 213 NGIR 216


>gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
 gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
          Length = 896

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 43/152 (28%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V A+ G GKTHIL +R+            +LCLT T  AA EM++R+ +++        
Sbjct: 26  LVLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVVGG------ 79

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN-I 153
                                               L V  +H FC   +     E   I
Sbjct: 80  --------------------------------DFSELMVGNVHRFCSKFL----FEQGRI 103

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            +  AI D+E++  +I + +      +  D N
Sbjct: 104 PADSAIIDDEEAVSIIADYRNEDEEGVTRDFN 135


>gi|147864600|emb|CAN81552.1| hypothetical protein VITISV_028617 [Vitis vinifera]
          Length = 332

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 52/139 (37%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +S+ +  ++ T+ E    SD +    + A  GSGK                 PS +L +T
Sbjct: 244 YSKYLQSLNDTQREA-ACSDISIPLMIVAGPGSGK--------------GISPSNILAMT 288

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T AAA+EMS R+  +                                        ET  
Sbjct: 289 FTTAAASEMSGRIAAVAGK-------------------------------------ETAK 311

Query: 130 GLKVQTIHAFCEAIMQQFP 148
            + V T H+F   + +   
Sbjct: 312 EVTVSTFHSFALQLCRSHA 330


>gi|160893318|ref|ZP_02074105.1| hypothetical protein CLOL250_00867 [Clostridium sp. L2-50]
 gi|156865010|gb|EDO58441.1| hypothetical protein CLOL250_00867 [Clostridium sp. L2-50]
          Length = 672

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 76/236 (32%), Gaps = 77/236 (32%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
           K +            V A  GSGKT ++  RV  +L     + + +L +T TKAAA EM 
Sbjct: 9   KEQTDAIRYEDGPMLVLAGPGSGKTTVITYRVKYMLEQTGINGNQILVITFTKAAANEMR 68

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R                                          I     G+   T H+ 
Sbjct: 69  TR---------------------------------------FEKISGYSDGVTFGTFHSV 89

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKL-------------IEEAKKSTLASIML---- 182
              I++         S   I + E+ + +              ++  K+ +A I L    
Sbjct: 90  FFMILRHAY---GYNSSNIILESEKYQIINGIIEKHNMEYNGQDDFAKNVIAEIGLVKSE 146

Query: 183 --------------DNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLI 221
                         D+ +   + + EIL  +N  D + ++    +++ +R+ ++ +
Sbjct: 147 MKPVEQYHSVNMKADDFQITYREYDEILRANNKIDFDDMLVFTYELLRDRSDIRKM 202


>gi|167552668|ref|ZP_02346420.1| helicase IV [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322775|gb|EDZ10614.1| helicase IV [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 684

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|169627503|ref|YP_001701152.1| exodeoxyribonuclease V, beta subunit (RecB) [Mycobacterium
           abscessus ATCC 19977]
 gi|169239470|emb|CAM60498.1| Exodeoxyribonuclease V, beta subunit (RecB) [Mycobacterium
           abscessus]
          Length = 1081

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 5/160 (3%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
           +D + +    A+AG+GKT  L   V R +         +L +T  +AA+ E+  RV   I
Sbjct: 12  ADRSTTVL-EASAGTGKTFALAGLVTRYVAEGVATLDQMLLITFGRAASQELRDRVRGQI 70

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                   +  +A     Q     + D  + R  L   L       + T H FC  +++ 
Sbjct: 71  VDALRAFADPSTARTDLTQYLISAEQDTRQRR--LRDALAGFDAATIATTHQFCHIVLKS 128

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             +  +  S   + +    + + E      L     D + 
Sbjct: 129 LGVAGDSDSGVTLVENLD-ELVCEIVNDRYLTHFGKDRDA 167


>gi|204930808|ref|ZP_03221681.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320267|gb|EDZ05471.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 684

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|168233449|ref|ZP_02658507.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469887|ref|ZP_03075871.1| helicase IV [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456251|gb|EDX45090.1| helicase IV [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205332486|gb|EDZ19250.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 684

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|85859507|ref|YP_461709.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
 gi|85722598|gb|ABC77541.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
          Length = 696

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 33/151 (21%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + +   A D      + A  G+GK++ + +RV  LL   A P  +  ++ T+A  AE++ 
Sbjct: 21  QRQWTAARDGAPQVRLVAGPGTGKSYTIEKRVADLLTNGATPGNVYVISFTRATCAELTE 80

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+    +                                           ++V T+H+  
Sbjct: 81  RIRAFCSTLPCA---------------------------------NAAAQVRVSTMHSLA 107

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
             I+++  L  +  S   + D+ +   + + 
Sbjct: 108 LRILRRANLLTSYPSTPIMLDDWEQTNVYDR 138


>gi|218548471|ref|YP_002382262.1| DNA helicase IV [Escherichia fergusonii ATCC 35469]
 gi|218356012|emb|CAQ88628.1| DNA helicase IV [Escherichia fergusonii ATCC 35469]
          Length = 684

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           MI  N+  E  + I+      ++     +   S  V A AGSGKT +LV R   LL    
Sbjct: 181 MIKENA--EFFQQIESSPLNPAQTRAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGE 238

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEII-------TAWSHLSDEILSAEITKIQGKKPNKS 112
           A    +L L   + AA EM  R+ + +         +  L+  I+     K+      ++
Sbjct: 239 AAAEQILLLAFGRKAAEEMDERIRQRLHTEDITARTFHSLALYIIQQGSKKLPTVSKLEN 298

Query: 113 DMSKARHLLIT 123
           D      L I 
Sbjct: 299 DTQARHELFIK 309


>gi|212640059|ref|YP_002316579.1| ATP-dependent DNA helicase [Anoxybacillus flavithermus WK1]
 gi|212561539|gb|ACJ34594.1| ATP-dependent DNA helicase [Anoxybacillus flavithermus WK1]
          Length = 603

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCL 68
           ++E ++ I   K EQ  A     S  V A  GSGKT +L  ++LRLL     P   L C+
Sbjct: 4   YNEKLNQIKSDK-EQYEAYLSEDSTVVIAGPGSGKTTVLTLKILRLLKEYIRPPRGLACV 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T +KAAA E+  R                                      L     +  
Sbjct: 63  TFSKAAAKEIKDR--------------------------------------LNAFGYQQR 84

Query: 129 GGLKVQTIHAFCEA-IMQQFP--LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
             + + T+H+FC + I+  F      +I     I  E++ K L ++         +  + 
Sbjct: 85  DNVFLGTVHSFCISEIISPFAHLYNYDIPLPLRIVSEKKRKSLFKQIISDFELEHLGLSI 144

Query: 186 EELKK 190
           EE+ K
Sbjct: 145 EEMDK 149


>gi|168701104|ref|ZP_02733381.1| UvrD/REP helicase [Gemmata obscuriglobus UQM 2246]
          Length = 1127

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 40/198 (20%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           E +   D      S++           V A  G+GKT  LV RV+ LL   N    ++L 
Sbjct: 189 EETRASDADEPDASQRTAIEAGDGPRQVRAGPGTGKTRTLVGRVVHLLRARNVPAGSILA 248

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT++  +A +++ R+   +   +                                     
Sbjct: 249 LTYSNLSAKDLAARIRAAVGDKAT------------------------------------ 272

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
              +   T HAF   ++++      +     + D   S   +E+       +  LD  E 
Sbjct: 273 --AVWSGTFHAFGLELLRKHGHVLGMEGPPKLLDRTDSLMFLEQLLPQLPLNHYLDLYEP 330

Query: 188 LKKAFYEILEISNDEDIE 205
             +A  +IL        +
Sbjct: 331 -ARALKDILNAIGRAKDD 347


>gi|229095812|ref|ZP_04226791.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-29]
 gi|228687645|gb|EEL41544.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-29]
          Length = 688

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV  +       S  +++                                    T 
Sbjct: 110 EIRSRVANLPGMNRATSSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|313827476|gb|EFS65190.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL063PA2]
 gi|315109407|gb|EFT81383.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL030PA2]
          Length = 1078

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDSCDWSLIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDCD 165


>gi|254773951|ref|ZP_05215467.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 710

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 50/152 (32%)

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AAAEM  RV+ ++                            ++AR     
Sbjct: 3   QVLAITFTNKAAAEMRERVVRLVG---------------------------NRAR----- 30

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS------- 175
                  + V T H+ C  I++        + S+F+I D + S++L++   +        
Sbjct: 31  ------AMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRRLLQMIGRDMGLDIKR 84

Query: 176 ----TLASIMLDNNEELKKAFYEILEISNDED 203
                LA+ + +   EL      +  +++D D
Sbjct: 85  YSPRLLANAISNLKNELIDPAAAVANLTDDSD 116


>gi|229016581|ref|ZP_04173520.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1273]
 gi|229022789|ref|ZP_04179313.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1272]
 gi|228738601|gb|EEL89073.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1272]
 gi|228744668|gb|EEL94731.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1273]
          Length = 688

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV  +       S  +++                                    T 
Sbjct: 110 EIRSRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|325496892|gb|EGC94751.1| DNA helicase IV [Escherichia fergusonii ECD227]
          Length = 684

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           MI  N+  E  + I+      ++     +   S  V A AGSGKT +LV R   LL    
Sbjct: 181 MIKENA--EFFQQIESSPLNPAQTRAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGE 238

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           A    +L L   + AA EM  R+ + +      +    S  +  IQ        +SK
Sbjct: 239 AAAEQILLLAFGRKAAEEMDERIRQRLHTEDITARTFHSLALYIIQQGSKKVPTVSK 295


>gi|89092788|ref|ZP_01165740.1| helicase IV [Oceanospirillum sp. MED92]
 gi|89082813|gb|EAR62033.1| helicase IV [Oceanospirillum sp. MED92]
          Length = 952

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTH 70
           + I+    T  ++L       +  V A AG+GKT  ++ +   L+ +       +L L +
Sbjct: 183 DKIESNPLTDKQRLACITDEDNNLVLAGAGTGKTSTMIGKTAYLIESKQAVGHEILLLAY 242

Query: 71  TKAAAAEMSHRVLEIITAWSHLS---DEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
              AAAEM  R+ E +   +  +     +    I+ ++G+KP+ S ++    L  + ++ 
Sbjct: 243 GNKAAAEMRERIQEKLGVSNVAAYTFHVLGQKIISDVEGEKPSISPLATDEKLFTSYVDQ 302


>gi|317491508|ref|ZP_07949944.1| UvrD/REP helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921055|gb|EFV42378.1| UvrD/REP helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 684

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           E ++      S+     +      V A AGSGKT +LV R   LLL   A P  +L L  
Sbjct: 190 EQVESQPLNASQAQAVVNGENGVLVLAGAGSGKTSVLVARAGWLLLRKEATPEQILLLAF 249

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            + AA EM+ R+ E +      +    +  +  I       + +SK
Sbjct: 250 GRKAAEEMNDRIQERLHTEDIQAKTFHALALQIINHSGKKTTHISK 295


>gi|254682605|ref|ZP_05146466.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. CNEVA-9066]
          Length = 280

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +RV  +       S  +++                                    T 
Sbjct: 110 EIRNRVANLPGMNHAASSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|229114763|ref|ZP_04244177.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-3]
 gi|228668828|gb|EEL24256.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-3]
          Length = 688

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 37/130 (28%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
               +QL A           A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA 
Sbjct: 50  FLNEKQLEAVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 109

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+  RV  +       S  +++                                    T 
Sbjct: 110 EIRSRVANLPGMNRATSSYVVA-----------------------------------GTF 134

Query: 137 HAFCEAIMQQ 146
           H+    +++ 
Sbjct: 135 HSVFLKLLRS 144


>gi|124008282|ref|ZP_01692978.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
 gi|123986231|gb|EAY26060.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
          Length = 877

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 89/257 (34%), Gaps = 60/257 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
             +  +S++          +++A  GSGKT +L+ + L L++     P  +   T T+ A
Sbjct: 16  GFTPNQSQEEAIRHTDGPLFLTAGPGSGKTRVLLWKCLYLIVHQQVAPEHIFLATFTEKA 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A ++   +  ++   ++ +++                                   + V 
Sbjct: 76  ALQLKEGLQSLLGLVTNRTNQTFD-----------------------------LSKMYVG 106

Query: 135 TIHAFCEAIM--QQFPLEANITSHFAIADEEQS-------------------KKLIEEAK 173
           T+H+ C  ++  ++F  +          D+ +                      L  E +
Sbjct: 107 TVHSLCNRLITDRRFGQKKGADKKITPIDDLEQYFHISNRKIWTAMIAAGGLDDLPAEEQ 166

Query: 174 KSTLASIMLDNNEELKK---AFYEILEISNDEDIETL----ISDIISNR--TALKLIFFF 224
              +   + +N+++      A   ++ + N    E L    ++ I+S      +  ++ F
Sbjct: 167 NQYINDYLAENHKKGVSRYNAIMHLMALFNRFTEECLDVATLNKIVSEEPMKKMVKMYAF 226

Query: 225 FSYLWRRKIIEKSLWSI 241
           +    + K  EK  +S+
Sbjct: 227 YLDSLQEKWQEKLDFSL 243


>gi|324113714|gb|EGC07689.1| UvrD/REP helicase [Escherichia fergusonii B253]
          Length = 684

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           MI  N+  E  + I+      ++     +   S  V A AGSGKT +LV R   LL    
Sbjct: 181 MIKENA--EFFQQIESSPLNPAQTRAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGE 238

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           A    +L L   + AA EM  R+ + +      +    S  +  IQ        +SK
Sbjct: 239 AAAEQILLLAFGRKAAEEMDERIRQRLHTEDITARTFHSLALYIIQQGSKKVPTVSK 295


>gi|170782257|ref|YP_001710590.1| putative DNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156826|emb|CAQ01993.1| putative DNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 640

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPST 64
           S +   E +D       ++L A        V A AG+GKT  +  R+   + A    P+ 
Sbjct: 45  SAESLLEALD-----DQQRLAAQALLGPVVVLAGAGTGKTRAITHRIAYGIQAGVYPPNR 99

Query: 65  LLCLTHTKAAAAEMSHRVLEI 85
           ++ LT T  AAAE+  R+ E+
Sbjct: 100 VMALTFTSRAAAELRGRLREL 120


>gi|324997806|ref|ZP_08118918.1| exodeoxyribonuclease V beta chain [Pseudonocardia sp. P1]
          Length = 173

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P+ +  + A+AG+GKT+ +     R +         L+ +T  + A  E+  RV E +  
Sbjct: 19  PSGTVVLEASAGTGKTYTIAALATRYVAEGVAGLDRLMLVTFGRDATQELRERVRERLVG 78

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKA--------RHLLITILETPGGLKVQTIHAFC 140
                  +L+      +   P  + ++ A        R  L     +     + T H FC
Sbjct: 79  TERALAAVLAGAEPPSRESDPVVAHLADAGPEEIGLRRARLAEASASFDAATIATTHQFC 138

Query: 141 EAIM 144
             ++
Sbjct: 139 RQML 142


>gi|77464192|ref|YP_353696.1| DNA helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388610|gb|ABA79795.1| Possible DNA helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 1715

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 76/197 (38%), Gaps = 27/197 (13%)

Query: 12   ETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
            + ++ +     ++++A D    +  V A  GSGKT +LV R+  LL +    P  +L L+
Sbjct: 1092 QIVEDLGNPVQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLS 1151

Query: 70   HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            + + AAAE+  R+  ++   +          +             ++             
Sbjct: 1152 YNRHAAAEIRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQ------------ 1199

Query: 130  GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
                   H F + ++++   + N         E Q + LI+  +      I++D  +++ 
Sbjct: 1200 -------HDF-QDVLREAVRQINGEGLSRTEAEAQREALIQGYRW-----ILVDEYQDIG 1246

Query: 190  KAFYEILEISNDEDIET 206
            +  Y+++       +E 
Sbjct: 1247 REEYDLIAAVAGRSLED 1263


>gi|325288281|ref|YP_004264462.1| UvrD/REP helicase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963682|gb|ADY54461.1| UvrD/REP helicase [Syntrophobotulus glycolicus DSM 8271]
          Length = 595

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 46/161 (28%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMS 79
             +Q        +  V+A  GSGKT +L  ++    L+N H +  ++ +T+T  AA E+ 
Sbjct: 15  NEQQKTIVMSNDNILVTACPGSGKTRVLTYKLAYTALSNPHSNRKIIAITYTNRAADEIK 74

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+                 E+  I                          +   TIH F
Sbjct: 75  DRL-----------------ELLDIDQ----------------------SAIWAGTIHQF 95

Query: 140 CE-AIMQQFPLEANIT---SHFAIADEEQSKKLIEEAKKST 176
           C   I+  +P   ++      F I DE    + I++     
Sbjct: 96  CLEYII--YPYAMSLPRLCKGFTIIDEYVHDQYIQQILDKF 134


>gi|265762686|ref|ZP_06091254.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255294|gb|EEZ26640.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 1624

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 42/139 (30%)

Query: 8    QEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
            Q++ +    +S  K +  + SD  +R   V+A  GSGKT +LV ++  LLL  +     L
Sbjct: 1064 QKYKQLFGQLS--KRQMDIISDKGSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQL 1121

Query: 66   LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
            L LT ++AAA E   R++E+I   +H  +                               
Sbjct: 1122 LMLTFSRAAATEFKQRLIELIGNAAHFVE------------------------------- 1150

Query: 126  ETPGGLKVQTIHAFCEAIM 144
                   ++T H++C  ++
Sbjct: 1151 -------IKTFHSYCFDLL 1162


>gi|315606173|ref|ZP_07881201.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon
          180 str. F0310]
 gi|315312131|gb|EFU60220.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon
          180 str. F0310]
          Length = 670

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
          E +D +     ++ +A+       V A AG+GKT  +  R+       A  PS +L +T 
Sbjct: 5  ELLDALD--PDQRAVATQVAGPLAVLAGAGTGKTRAITYRIAYGAAVGAVDPSNVLAVTF 62

Query: 71 TKAAAAEMSHRVLEI 85
          T+ AA EM HR+ ++
Sbjct: 63 TQRAAFEMRHRLAQL 77


>gi|323359571|ref|YP_004225967.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
          StLB037]
 gi|323275942|dbj|BAJ76087.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
          StLB037]
          Length = 584

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
          S+ ++ +   + E   A        V A AG+GKT ++ +R+   +   A  P  ++ +T
Sbjct: 3  SDALEGLDDHQLEAARAL--RGPVCVLAGAGTGKTRVITRRIAHGVDTGAYSPQRVMAVT 60

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AA EM  R+  +
Sbjct: 61 FTAKAAGEMRGRLRAL 76


>gi|254776581|ref|ZP_05218097.1| ATP-dependent DNA helicase [Mycobacterium avium subsp. avium ATCC
          25291]
          Length = 703

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++     P     V A AG+GKT  +  R+ +L+       + +L +T T+ AA EM
Sbjct: 13 DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAANQVLAVTFTQRAAGEM 72

Query: 79 S 79
           
Sbjct: 73 R 73


>gi|227486206|ref|ZP_03916522.1| ATP-dependent DNA helicase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235837|gb|EEI85852.1| ATP-dependent DNA helicase [Anaerococcus lactolyticus ATCC 51172]
          Length = 853

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 34/130 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
            +S++++       A V A  G+GKT+ +V++V+ L+      P+ +L  T TK AA+E+
Sbjct: 3   NESQRIIIEKARTPAAVIAGPGTGKTYTIVKKVISLIKNEGISPNRILLTTFTKKAASEL 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R++      S    E +  E+                             + +   H+
Sbjct: 63  QTRII------SEFKAEGIKTELKD---------------------------MMIGNFHS 89

Query: 139 FCEAIMQQFP 148
                ++++P
Sbjct: 90  LALDFLEKYP 99


>gi|283833754|ref|ZP_06353495.1| helicase IV [Citrobacter youngae ATCC 29220]
 gi|291070413|gb|EFE08522.1| helicase IV [Citrobacter youngae ATCC 29220]
          Length = 684

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E  + I+      ++     +  +S  V A AGSGKT +LV R   LL    A    +L 
Sbjct: 187 EFFQRIESSPLNPAQARAVVNGEQSLLVLAGAGSGKTSVLVARAGWLLARGEAAAEQILL 246

Query: 68  LTHTKAAAAEMSHRVLEIITA 88
           L   + AA EM  R+ E +  
Sbjct: 247 LAFGRKAAQEMDDRIRERLNT 267


>gi|239982164|ref|ZP_04704688.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1079

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 41/149 (27%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
                V A  G+GKT  LV+ V   L A   P  +L LT ++ AA ++  R+ + ++   
Sbjct: 6   AGPLLVLAGPGTGKTTTLVESVAARLAAGTPPERILVLTFSRRAAVDLRDRMAQRLS--- 62

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                               T    +  T H+FC A+++    +
Sbjct: 63  ------------------------------------TATAPRATTFHSFCYALVRAH-QD 85

Query: 151 ANITSHF-AIADEEQSKKLIEEAKKSTLA 178
           A++ +    +    +    + E     + 
Sbjct: 86  ADLFAEPLRLLSGPEQDVAVRELLAGQIE 114


>gi|283954666|ref|ZP_06372184.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793858|gb|EFC32609.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 644

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 40/157 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
             S++  AS    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8   NDSQKEAASHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R L  +    +                                           T H 
Sbjct: 68  RRRALNFLQGNHNPLL---------------------------------------CTFHK 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F    ++         + F + D + +KK+I++    
Sbjct: 89  FGLLFLKLHFERLERKNSFIVIDTDDTKKIIKDLILD 125


>gi|256785339|ref|ZP_05523770.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 1121

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
              +    V A  G+GKT  LV+ V   +     P  +L LT ++ AA E+  R+   I
Sbjct: 2  VDHRSGPLLVLAGPGTGKTTTLVESVADRIARGGDPERILVLTFSRKAAVELRDRMALRI 61

Query: 87 TAW 89
           A 
Sbjct: 62 GAA 64


>gi|186686894|ref|YP_001870087.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
 gi|186469246|gb|ACC85046.1| ATP-dependent DNA helicase, RecQ family [Nostoc punctiforme PCC
            73102]
          Length = 1675

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 75/194 (38%), Gaps = 24/194 (12%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66
            +++ + ++ ++  + E ++ASDP     V A  GSGKT  +V R+  L+ +    P  +L
Sbjct: 1042 EDYKQIVEPLNSAQKEIVIASDPA--MAVIAGPGSGKTRTIVHRIAYLVKVKRVEPKRIL 1099

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             L + + A  E+  R+  I+   S          +               A  LL   + 
Sbjct: 1100 VLAYNRNAVRELRLRLRNILGEQSSQIRVFTFHGL---------------ALALLGRTVG 1144

Query: 127  TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                 +          ++ +          F   D++   + I+   K  L  I +D  +
Sbjct: 1145 EYSRTQAINFD----RLLIEACELLAKGEEFEDVDDDIQARRIQLLGK--LEYIFVDEYQ 1198

Query: 187  ELKKAFYEILEISN 200
            ++ +  Y ++++ +
Sbjct: 1199 DVSEKEYRLIKLIS 1212


>gi|328907786|gb|EGG27549.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           sp. P08]
          Length = 1078

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 8/159 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PRGTVLLAASAGTGKTWTISAVCAKAIATGMVHMENLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             S L+     ++       +  +  +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRSLLAGSRKPSDPCDEALIRLGQDGLTR----VESALDAFDKAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            + ++      +        L  E       +  LD + 
Sbjct: 130 GVLSDHDPSSVLM--TDLTPLATEVSDDHYLARYLDCDH 166


>gi|50083654|ref|YP_045164.1| exonuclease V beta [Acinetobacter sp. ADP1]
 gi|49529630|emb|CAG67342.1| exonuclease V, beta chain [Acinetobacter sp. ADP1]
          Length = 1234

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 78/192 (40%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +        
Sbjct: 21  LIEASAGTGKTYTLSSLMVRIFLEKYLPQQVIATTFTRAAAAELKARIRSRLHQTLTYLQ 80

Query: 95  EILSAEITKIQGKKPNKSD-------------MSKARHLLITILETPGGLKVQTIHAFCE 141
           E      ++I  K   ++D             +  A   L  +L+    L V T+ +F +
Sbjct: 81  ECRGLTESEILQKAQQETDPLLEYLLQQFSLRIGYACERLKLVLDQLDELFVGTLDSFSQ 140

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       I D   +K    +     L + +    + L    Y +  + + 
Sbjct: 141 KLLREFAFESGKIERADITD--DAKAYTRQLIHDVLRAWIQAQPQALIDGLYNMGALKSV 198

Query: 202 EDIETLISDIIS 213
           +    L+   ++
Sbjct: 199 DAFVGLVESSLN 210


>gi|262164920|ref|ZP_06032658.1| DNA helicase IV [Vibrio mimicus VM223]
 gi|262027300|gb|EEY45967.1| DNA helicase IV [Vibrio mimicus VM223]
          Length = 687

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAE 262

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+   I        E     +           +  + R ++++ L     LK     A+C
Sbjct: 263 RLKNKIGL------EAERLHVNTFHQLGLRILNRVEGRTVIMSPLANDSKLK----QAWC 312

Query: 141 EAIMQQF 147
              +++ 
Sbjct: 313 IDWLKRH 319


>gi|149366585|ref|ZP_01888619.1| putative helicase IV [Yersinia pestis CA88-4125]
 gi|165924415|ref|ZP_02220247.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165940131|ref|ZP_02228664.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167419681|ref|ZP_02311434.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167467236|ref|ZP_02331940.1| DNA helicase IV [Yersinia pestis FV-1]
 gi|218928586|ref|YP_002346461.1| DNA helicase IV [Yersinia pestis CO92]
 gi|229841415|ref|ZP_04461574.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843525|ref|ZP_04463668.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. India 195]
 gi|115347197|emb|CAL20091.1| putative helicase IV [Yersinia pestis CO92]
 gi|149290959|gb|EDM41034.1| putative helicase IV [Yersinia pestis CA88-4125]
 gi|165911954|gb|EDR30598.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923475|gb|EDR40607.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|166962422|gb|EDR58443.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229689133|gb|EEO81196.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697781|gb|EEO87828.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 661

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-P 62
              +Q+  + ++      S+     +   S  V A AGSGKT +LV R   LL  N   P
Sbjct: 182 LEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM+ R+ + +   S  +    +  +  IQ        +SK
Sbjct: 242 EQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISK 295


>gi|22126608|ref|NP_670031.1| DNA helicase IV [Yersinia pestis KIM 10]
 gi|45441158|ref|NP_992697.1| DNA helicase IV [Yersinia pestis biovar Microtus str. 91001]
 gi|108806729|ref|YP_650645.1| DNA helicase IV [Yersinia pestis Antiqua]
 gi|108812700|ref|YP_648467.1| DNA helicase IV [Yersinia pestis Nepal516]
 gi|145598818|ref|YP_001162894.1| DNA helicase IV [Yersinia pestis Pestoides F]
 gi|162421603|ref|YP_001607560.1| DNA helicase IV [Yersinia pestis Angola]
 gi|166011987|ref|ZP_02232885.1| helicase IV [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211746|ref|ZP_02237781.1| helicase IV [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402312|ref|ZP_02307780.1| helicase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167423870|ref|ZP_02315623.1| helicase IV [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229894374|ref|ZP_04509557.1| DNA helicase IV [Yersinia pestis Pestoides A]
 gi|229903096|ref|ZP_04518211.1| DNA helicase IV [Yersinia pestis Nepal516]
 gi|270486898|ref|ZP_06203972.1| UvrD/REP helicase [Yersinia pestis KIM D27]
 gi|294503424|ref|YP_003567486.1| DNA helicase IV [Yersinia pestis Z176003]
 gi|21959616|gb|AAM86282.1|AE013875_11 DNA helicase IV [Yersinia pestis KIM 10]
 gi|45436018|gb|AAS61574.1| DNA helicase IV [Yersinia pestis biovar Microtus str. 91001]
 gi|108776348|gb|ABG18867.1| helicase IV [Yersinia pestis Nepal516]
 gi|108778642|gb|ABG12700.1| putative helicase IV [Yersinia pestis Antiqua]
 gi|145210514|gb|ABP39921.1| helicase IV [Yersinia pestis Pestoides F]
 gi|162354418|gb|ABX88366.1| helicase IV [Yersinia pestis Angola]
 gi|165989154|gb|EDR41455.1| helicase IV [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207517|gb|EDR51997.1| helicase IV [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167048278|gb|EDR59686.1| helicase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056719|gb|EDR66482.1| helicase IV [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229679876|gb|EEO75977.1| DNA helicase IV [Yersinia pestis Nepal516]
 gi|229703772|gb|EEO90788.1| DNA helicase IV [Yersinia pestis Pestoides A]
 gi|262361467|gb|ACY58188.1| DNA helicase IV [Yersinia pestis D106004]
 gi|262365394|gb|ACY61951.1| DNA helicase IV [Yersinia pestis D182038]
 gi|270335402|gb|EFA46179.1| UvrD/REP helicase [Yersinia pestis KIM D27]
 gi|294353883|gb|ADE64224.1| DNA helicase IV [Yersinia pestis Z176003]
 gi|320015694|gb|ADV99265.1| DNA helicase IV [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 684

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-P 62
              +Q+  + ++      S+     +   S  V A AGSGKT +LV R   LL  N   P
Sbjct: 182 LEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM+ R+ + +   S  +    +  +  IQ        +SK
Sbjct: 242 EQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISK 295


>gi|319949233|ref|ZP_08023317.1| ATP-dependent DNA helicase UvrD2 [Dietzia cinnamea P4]
 gi|319437100|gb|EFV92136.1| ATP-dependent DNA helicase UvrD2 [Dietzia cinnamea P4]
          Length = 695

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             ++     P     + A AG+GKT  + +R+  L+         +L +T T  AA E+
Sbjct: 5  DPQQRRAVLAPRGPVCILAGAGTGKTRTITRRIAHLVTTGHVRGDQVLAVTFTARAAGEL 64

Query: 79 SHRV 82
            R+
Sbjct: 65 RMRL 68


>gi|227546870|ref|ZP_03976919.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227212832|gb|EEI80713.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|291516123|emb|CBK69739.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Bifidobacterium
           longum subsp. longum F8]
          Length = 1371

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 88/265 (33%), Gaps = 33/265 (12%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILV--------QRV 52
           M+ H      SE  D +S            T    +SA+AG+GKT  L+         R 
Sbjct: 1   MVEHVDALPRSEDADNLSDDFP------TNTMPYVISASAGTGKTTQLLQDILLDLLNRN 54

Query: 53  LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112
                A++     L +T T AAAAE+  R+ + +      +      +   +     +  
Sbjct: 55  AD--EAHSSIRESLIITFTVAAAAEIRRRLEQNLQYAILYARRNHGCQPGSLVLLDTDYQ 112

Query: 113 --------------DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA 158
                         D   A+ +    L     +++ TI A  + I+ +      +   F 
Sbjct: 113 LGGDDSELARTILHDCHHAQTVFSVALNDLPTVQISTIDALSKRIVDRNADTLPVAPGFQ 172

Query: 159 IA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
           I  D+    +L  +   +   S   + N    +    +  +        L + ++S    
Sbjct: 173 ILADDAMKNRLRGQTLDALFESWYDERNSMHARFMDVLDNMQGPRHDGDLRATMMSLYD- 231

Query: 218 LKLIFFFFSYLWRRKIIEKSLWSIA 242
            K +       W  ++ E   ++IA
Sbjct: 232 -KALTKPNRIGWLSRLAEPYRFNIA 255


>gi|118464110|ref|YP_883291.1| ATP-dependent DNA helicase [Mycobacterium avium 104]
 gi|118165397|gb|ABK66294.1| ATP-dependent DNA helicase [Mycobacterium avium 104]
          Length = 743

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
              ++     P     V A AG+GKT  +  R+ +L+       + +L +T T+ AA EM
Sbjct: 53  DDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAANQVLAVTFTQRAAGEM 112

Query: 79  S 79
            
Sbjct: 113 R 113


>gi|332174077|gb|AEE23331.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 947

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
           ++ + +T++    T+ ++  +     S  + A AG+GKT ++V R   LL    A P  +
Sbjct: 227 YRNYFDTVESNPLTEKQRRASVIDDDSNLLLAGAGTGKTSVMVARAGYLLTSEQARPEEI 286

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
           L L + K AA EM  R+ + +   S  +    S  +T I   +  +  +S
Sbjct: 287 LLLAYGKKAATEMDERIKDKLGIDSIKTSTFHSLGLTIISQVEGKQPSLS 336


>gi|213691705|ref|YP_002322291.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|322691505|ref|YP_004221075.1| ATP-dependent nuclease subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|213523166|gb|ACJ51913.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320456361|dbj|BAJ66983.1| putative ATP-dependent nuclease subunit A [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320457796|dbj|BAJ68417.1| putative ATP-dependent nuclease subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 1371

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 88/265 (33%), Gaps = 33/265 (12%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILV--------QRV 52
           M+ H      SE  D +S            T    +SA+AG+GKT  L+         R 
Sbjct: 1   MVEHVDALPRSEDADNLSDDFP------TNTMPYVISASAGTGKTTQLLQDILLDLLNRN 54

Query: 53  LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112
                A++     L +T T AAAAE+  R+ + +      +      +   +     +  
Sbjct: 55  AD--EAHSSIRESLIITFTVAAAAEIRRRLEQNLQYAILYARRNHGCQPGSLVLLDTDYQ 112

Query: 113 --------------DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA 158
                         D   A+ +    L     +++ TI A  + I+ +      +   F 
Sbjct: 113 LGGDDSELARTILHDCHHAQTVFSVALNDLPTVQISTIDALSKRIVDRNADTLPVAPGFQ 172

Query: 159 IA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
           I  D+    +L  +   +   S   + N    +    +  +        L + ++S    
Sbjct: 173 ILADDAMKNRLRGQTLDALFESWYDERNSMHARFMDVLDNMQGPRHDGDLRATMMSLYD- 231

Query: 218 LKLIFFFFSYLWRRKIIEKSLWSIA 242
            K +       W  ++ E   ++IA
Sbjct: 232 -KALTKPNRIGWLSRLAEPYRFNIA 255


>gi|51891749|ref|YP_074440.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51855438|dbj|BAD39596.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 672

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           T  +    +       V A  GSGKT ++ +R+  L+ +    P +LL +T TKAAA E+
Sbjct: 62  TPEQARAVTHAAGPLMVVAGPGSGKTTVIARRIGYLIAVRGVDPRSLLVITFTKAAADEL 121

Query: 79  S 79
            
Sbjct: 122 K 122


>gi|51595798|ref|YP_069989.1| DNA helicase IV [Yersinia pseudotuberculosis IP 32953]
 gi|153948937|ref|YP_001401501.1| DNA helicase IV [Yersinia pseudotuberculosis IP 31758]
 gi|170024850|ref|YP_001721355.1| DNA helicase IV [Yersinia pseudotuberculosis YPIII]
 gi|186894881|ref|YP_001871993.1| DNA helicase IV [Yersinia pseudotuberculosis PB1/+]
 gi|51589080|emb|CAH20698.1| putative DNA helicase IV [Yersinia pseudotuberculosis IP 32953]
 gi|152960432|gb|ABS47893.1| helicase IV [Yersinia pseudotuberculosis IP 31758]
 gi|169751384|gb|ACA68902.1| UvrD/REP helicase [Yersinia pseudotuberculosis YPIII]
 gi|186697907|gb|ACC88536.1| UvrD/REP helicase [Yersinia pseudotuberculosis PB1/+]
          Length = 684

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-P 62
              +Q+  + ++      S+     +   S  V A AGSGKT +LV R   LL  N   P
Sbjct: 182 LEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM+ R+ + +   S  +    +  +  IQ        +SK
Sbjct: 242 EQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISK 295


>gi|154482468|ref|ZP_02024916.1| hypothetical protein EUBVEN_00135 [Eubacterium ventriosum ATCC
          27560]
 gi|149736669|gb|EDM52555.1| hypothetical protein EUBVEN_00135 [Eubacterium ventriosum ATCC
          27560]
          Length = 609

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77
            KS+    S     A V A  GSGKT ++  R+  L+      P  +L +T TKAAA  
Sbjct: 2  FNKSQIQAISHMDGPAMVLAGPGSGKTTVITHRIKNLIEKAEVRPENILVVTFTKAAAIS 61

Query: 78 MSHR 81
          M  R
Sbjct: 62 MQKR 65


>gi|321223690|gb|EFX48753.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 315

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 251

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 252 KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|256419942|ref|YP_003120595.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
 gi|256034850|gb|ACU58394.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
          Length = 1066

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 42/146 (28%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59
           +  + +Q+H    ++  +   +Q  A D       V A  G+GKT IL  R+ ++L   +
Sbjct: 1   MSRDQYQQHFR--EMYDRLNRQQRQAVDQTDGPVMVIAGPGTGKTQILASRIGKILQDTD 58

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             P  +LCLT+T A    M  R+   I   +                             
Sbjct: 59  YQPQNILCLTYTDAGTVAMRKRLTGFIGPDA----------------------------- 89

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQ 145
                      + + T H+FC  ++Q
Sbjct: 90  ---------YRVNIHTFHSFCNEVIQ 106


>gi|146329606|ref|YP_001210049.1| exonuclease V, beta subunit [Dichelobacter nodosus VCS1703A]
 gi|146233076|gb|ABQ14054.1| exonuclease V, beta subunit [Dichelobacter nodosus VCS1703A]
          Length = 1198

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 51/199 (25%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRV 82
           +    + A+AG+GKT+ L   +LRLLL+           P  ++  T T+ AAAEM  R+
Sbjct: 11  SGKVLIEASAGTGKTYTLTGILLRLLLSEVPSKGIFARAPEAIIATTFTRKAAAEMRMRL 70

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-------------- 128
              + A  HL   +    +   + +    + ++    L     +TP              
Sbjct: 71  KMRLNAMHHLLQALAQTLLQSDEEETDYYAHIAHLLTLWAENAQTPAEKAAQESLNHALI 130

Query: 129 --------------------------GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                       L + T+ + C+  ++ F LE        + D 
Sbjct: 131 LEAVQENGIDGFTDLCQRCNSVIATLDRLFIGTLDSLCQHWLRMFSLETGTAQSTKLVDG 190

Query: 163 EQSKKLIEEAKKSTLASIM 181
            +    I E     L    
Sbjct: 191 HEE---ITEIVHQQLRQFY 206


>gi|262173932|ref|ZP_06041609.1| DNA helicase IV [Vibrio mimicus MB-451]
 gi|261891290|gb|EEY37277.1| DNA helicase IV [Vibrio mimicus MB-451]
          Length = 687

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAE 262

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+   I        E     +           +  + R ++++ L     LK     A+C
Sbjct: 263 RLKNKIGL------EAERLHVNTFHQLGLRILNRVEGRTVIMSPLANDSKLK----QAWC 312

Query: 141 EAIMQQF 147
              +++ 
Sbjct: 313 IDWLKRH 319


>gi|67526679|ref|XP_661401.1| hypothetical protein AN3797.2 [Aspergillus nidulans FGSC A4]
 gi|40740815|gb|EAA60005.1| hypothetical protein AN3797.2 [Aspergillus nidulans FGSC A4]
          Length = 949

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71
            +D ++  +   + +S P     V A  GSGKT  L  RV  LL      P  ++C T T
Sbjct: 7   ILDGLNSAQRTAVTSSAPI--LQVLAPPGSGKTKTLTSRVAYLLAHDGYRPQDVICCTFT 64

Query: 72  KAAAAEMSH-----RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             A+ EM       R+++ +      +         K  G  P+  D++  ++ +  +LE
Sbjct: 65  IKASREMRERLAKLRIVKRLQLGIQPNTARARISHQKAHGVSPD--DVAAKQNKISKLLE 122

Query: 127 TPGGLKVQ 134
               ++V 
Sbjct: 123 HREFVQVY 130


>gi|238757661|ref|ZP_04618845.1| Helicase IV (75 kDa helicase) [Yersinia aldovae ATCC 35236]
 gi|238704166|gb|EEP96699.1| Helicase IV (75 kDa helicase) [Yersinia aldovae ATCC 35236]
          Length = 684

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 1/111 (0%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTL 65
           +Q+  + ++     +S++    +   S  V A AGSGKT +LV R   LL  N   P  +
Sbjct: 185 YQDFFQQVETSPLNESQRRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQI 244

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           L L   + AA EM+ R+ + +      +    +  +  IQ        +SK
Sbjct: 245 LLLAFGRQAADEMNSRIKQRLAVDDIQAKTFHALALQIIQQGSRKTPVISK 295


>gi|289812500|ref|ZP_06543129.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 190

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 16  IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 75

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 76  KAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 119


>gi|320533596|ref|ZP_08034239.1| hypothetical protein HMPREF9057_02127 [Actinomyces sp. oral taxon
          171 str. F0337]
 gi|320134190|gb|EFW26495.1| hypothetical protein HMPREF9057_02127 [Actinomyces sp. oral taxon
          171 str. F0337]
          Length = 121

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 4  HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HP 62
          H +  + S  ++ +   + E  +A        V A AG+GKT  +  R+   +   A   
Sbjct: 7  HPAPLDASRLLEALDPDQRE--VAEHLEGPLCVLAGAGTGKTRAITYRIAHGVATGAYQA 64

Query: 63 STLLCLTHTKAAAAEMSHRVLEI 85
          + +L +T T  AA EM  R+ ++
Sbjct: 65 TQVLAVTFTARAAGEMRSRLADL 87


>gi|296392994|ref|YP_003657878.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296180141|gb|ADG97047.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 1062

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69
          ++ I     ++ ++ +   P  S+ V A AGSGKT  +  RV+ L+      P  +L LT
Sbjct: 8  AQAIGAPVPSEEQEQVIGAPLASSAVLAGAGSGKTETVAARVVWLIANGLVEPEHVLGLT 67

Query: 70 HTKAAAAEMSHRVLEIITAWSHLS 93
           T++AA  M  RV   +  ++   
Sbjct: 68 FTRSAARGMLARVRARLAGFAASP 91


>gi|226321331|ref|ZP_03796858.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi Bol26]
 gi|226233127|gb|EEH31879.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi Bol26]
          Length = 1169

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|183602366|ref|ZP_02963732.1| probable DNA helicase II [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241191280|ref|YP_002968674.1| DNA helicase II [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196686|ref|YP_002970241.1| DNA helicase II [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218285|gb|EDT88930.1| probable DNA helicase II [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249672|gb|ACS46612.1| DNA helicase II [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251240|gb|ACS48179.1| DNA helicase II [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295794273|gb|ADG33808.1| DNA helicase II [Bifidobacterium animalis subsp. lactis V9]
          Length = 529

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L +   +++  A        + A AG+GKT  + +R+     +    P+ +L +T +  A
Sbjct: 34  LATLDDAQRSAALAVDGPVRIIAVAGAGKTRTITRRIAYACASGVWDPTRVLAVTFSVKA 93

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETP 128
           A EM  R+  +       +    SA + +++   P+               L+   L   
Sbjct: 94  ANEMRERLDALQVPRGVRASTFHSAALRQMREVWPDICEGPFPDVTEDKSALVAQALYRF 153

Query: 129 GGLK 132
            G++
Sbjct: 154 NGIR 157


>gi|34763240|ref|ZP_00144202.1| DNA helicase II [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887093|gb|EAA24202.1| DNA helicase II [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 919

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 60/219 (27%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +S    +Q  A +       + A  G+GKT  LV+R + +L+        ++  T T  A
Sbjct: 1   MSDLNKKQFKAVETVNGPVVIIAGPGTGKTKTLVERTVNILVNKKVEAKKIMITTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ E +   +   D                                    + + 
Sbjct: 61  AKELELRINERLEELNKNID---------------------------------ISDMYLG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+    ++Q+    +N   +F                      +M  + E+    +  
Sbjct: 88  TMHSIWARLIQENITYSNFFDNF---------------------ELMSGDYEQHFFIYSR 126

Query: 195 ILEISNDEDIETLISDIISN----RTALKLIFFFFSYLW 229
           + E    ED +    ++  N    R+  +   F  + + 
Sbjct: 127 LKEYKKLEDYQKFFDNLSYNENKYRSDWQKSSFLRNKIN 165


>gi|226320369|ref|ZP_03795938.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 29805]
 gi|226234232|gb|EEH32944.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 29805]
          Length = 1169

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|229542915|ref|ZP_04431975.1| UvrD/REP helicase [Bacillus coagulans 36D1]
 gi|229327335|gb|EEN93010.1| UvrD/REP helicase [Bacillus coagulans 36D1]
          Length = 723

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 46/180 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +Q           + A+ GSGKT  ++ R+  L+      P+ +  +T ++AAAA+M  R
Sbjct: 23  QQEAVKQTEGPLLLLASPGSGKTTTVIMRIGYLIEEKGVAPARIKAITFSRAAAADMKDR 82

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
                                                     +      +   TIH+   
Sbjct: 83  ---------------------------------------FQKLFPNLPPVDFSTIHSLAF 103

Query: 142 AIMQQFPLEANITSHFAIADEE----QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
            +++ F    N+   F + + E    Q KK++    ++     + ++  E  + +   ++
Sbjct: 104 ELVRVFFRRTNVP--FLLIEGEAGPYQKKKILRNVYRNIHGEKITEDQLEELQTYISYIK 161


>gi|294649115|ref|ZP_06726557.1| exodeoxyribonuclease V beta subunit [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824998|gb|EFF83759.1| exodeoxyribonuclease V beta subunit [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 1237

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 15/174 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P+ ++  T T+AAAAE+  R+   +       +
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPNQVIATTFTRAAAAELKSRIRARLIEVQQYLE 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHL-------------LITILETPGGLKVQTIHAFCE 141
            + +   + I  +   +SD  K   L             L  +++    L V T+ +F +
Sbjct: 82  PMRTVLESDIYTRAAQESDPLKQHLLKTFAPRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            ++++F  E+       I   E +K    +     L   +    + +  A Y +
Sbjct: 142 KLLREFAFESGKIERAQIT--EDAKAYTRQLIHDVLREWIQSQPQHVIDALYSV 193


>gi|256844886|ref|ZP_05550344.1| DNA helicase II [Fusobacterium sp. 3_1_36A2]
 gi|256718445|gb|EEU32000.1| DNA helicase II [Fusobacterium sp. 3_1_36A2]
          Length = 919

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 60/219 (27%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +S    +Q  A +       + A  G+GKT  LV+R + +L+        ++  T T  A
Sbjct: 1   MSDLNKKQFEAVETVNGPVVIIAGPGTGKTKTLVERTVNILVNKKVEAKKIMITTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ E +   +   D                                    + + 
Sbjct: 61  AKELELRINERLEELNENID---------------------------------ISDIYLG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+    ++Q+    +N   +F                      +M  + E+    +  
Sbjct: 88  TMHSIWARLIQENITYSNFFDNF---------------------ELMSGDYEQHFFIYSR 126

Query: 195 ILEISNDEDIETLISDIISN----RTALKLIFFFFSYLW 229
           + E    ED +    ++  N    R+  K   F  + + 
Sbjct: 127 LKEYKKLEDYQKFFDNLSYNENKYRSDWKKSSFLRNKIN 165


>gi|303240431|ref|ZP_07326948.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus
            CD2]
 gi|302591996|gb|EFL61727.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus
            CD2]
          Length = 1602

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 83/212 (39%), Gaps = 55/212 (25%)

Query: 12   ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
            +    +S T+ + ++  + T+   V+A  GSGKT +LV ++  LLL  +     LL +T 
Sbjct: 1044 QLFGELSPTQLK-IITDNQTKHIVVAAGPGSGKTRVLVHKLASLLLMEDVKHEQLLMVTF 1102

Query: 71   TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            ++AA  E   R+L++I   ++  +                                    
Sbjct: 1103 SRAAVTEFKKRLLKLIGNAANFVE------------------------------------ 1126

Query: 131  LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
              ++T H++C  ++              +   E++ ++I+EA +             + K
Sbjct: 1127 --IKTFHSYCFDLLG------------RVGTLEKTDEVIKEAIRRI--QSGEVEAGRITK 1170

Query: 191  AFYEILEISN-DEDIETLISDIISNRTALKLI 221
                I E  + D D   LI++++     +++I
Sbjct: 1171 MVLVIDEAQDMDADEFALINELVEQNEDMRVI 1202


>gi|154489095|ref|ZP_02029944.1| hypothetical protein BIFADO_02407 [Bifidobacterium adolescentis
           L2-32]
 gi|154083232|gb|EDN82277.1| hypothetical protein BIFADO_02407 [Bifidobacterium adolescentis
           L2-32]
          Length = 666

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  QTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +   EQ+   +    +  V A AG+GKT  +V  +  LL    A P  +L L+ TKA+A 
Sbjct: 107 ELSDEQISAIAGAGHNTLVLAGAGTGKTTTIVGYIAWLLATKRATPEEILVLSFTKASAD 166

Query: 77  EMSHRVLEIITA 88
           EMS R++     
Sbjct: 167 EMSQRIMASTGK 178


>gi|15594978|ref|NP_212767.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi
           B31]
 gi|8134451|sp|O51578|EX5B_BORBU RecName: Full=Exodeoxyribonuclease V beta chain
 gi|2688551|gb|AAC66981.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi
           B31]
          Length = 1169

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|258623933|ref|ZP_05718886.1| helicase IV [Vibrio mimicus VM603]
 gi|258583727|gb|EEW08523.1| helicase IV [Vibrio mimicus VM603]
          Length = 687

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAE 262

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+   I        E     +           +  + R ++++ L     LK     A+C
Sbjct: 263 RLKNKIGL------EAERLHVNTFHQLGLRILNRVEGRTVIMSPLANDSKLK----QAWC 312

Query: 141 EAIMQQF 147
              +++ 
Sbjct: 313 IDWLKRH 319


>gi|262403764|ref|ZP_06080322.1| DNA helicase IV [Vibrio sp. RC586]
 gi|262350268|gb|EEY99403.1| DNA helicase IV [Vibrio sp. RC586]
          Length = 687

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM
Sbjct: 201 NHSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAQEM 260

Query: 79  SHRVLEIITAWSH 91
           + R+   I   + 
Sbjct: 261 AERLKNKIGLEAE 273


>gi|218249700|ref|YP_002375134.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi ZS7]
 gi|218164888|gb|ACK74949.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi ZS7]
          Length = 1169

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|198277296|ref|ZP_03209827.1| hypothetical protein BACPLE_03508 [Bacteroides plebeius DSM 17135]
 gi|198269794|gb|EDY94064.1| hypothetical protein BACPLE_03508 [Bacteroides plebeius DSM 17135]
          Length = 1606

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 40/138 (28%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
            +++ +    +SQ + E +++   +R   V+A  GSGKT +LV ++  LLL  +     LL
Sbjct: 1047 EKYKQLFGQLSQRQME-IISDKESRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1105

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             LT ++AAA E   R++E+I   +H  +                                
Sbjct: 1106 MLTFSRAAATEFKQRLMELIGNAAHYVE-------------------------------- 1133

Query: 127  TPGGLKVQTIHAFCEAIM 144
                  ++T HA+C  ++
Sbjct: 1134 ------IKTFHAYCFDLL 1145


>gi|224533481|ref|ZP_03674071.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi
           CA-11.2a]
 gi|224513361|gb|EEF83722.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi
           CA-11.2a]
          Length = 1169

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|225550058|ref|ZP_03771019.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 118a]
 gi|225369517|gb|EEG98969.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 118a]
          Length = 1169

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|225548947|ref|ZP_03769924.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 94a]
 gi|225370550|gb|EEG99986.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 94a]
          Length = 1169

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|221217840|ref|ZP_03589307.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 72a]
 gi|221192146|gb|EEE18366.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 72a]
          Length = 1169

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|322817641|gb|EFZ25307.1| ATP-dependent DNA helicase, putative [Trypanosoma cruzi]
          Length = 713

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 75/215 (34%), Gaps = 42/215 (19%)

Query: 16  LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           L+S     Q  A   D + S  + A AGSGKT  +  R+  ++L+      +L L  ++ 
Sbjct: 92  LVSALDEAQRAAVCEDASASLLILAGAGSGKTLTMASRIAYIILSGVAAEKILGLCFSRQ 151

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA  +  RV  ++                                    ++      LK+
Sbjct: 152 AAEALRERVATVLP----------------------------------PSMAAHVQRLKL 177

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           +T HAF    +++      I     + D  + ++L   A     A  +     E   A  
Sbjct: 178 KTFHAFGLECLRRHGC---IDLATEVYDARRQREL---ASAVVEAHAVHHKGLEAVLALV 231

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
           E +  +  +      ++I  +R A  L  F+ + L
Sbjct: 232 EYVNKAKTKKDMRAGTEIDPSRQAAYLFRFYQTML 266


>gi|219683319|ref|YP_002469702.1| DNA helicase II [Bifidobacterium animalis subsp. lactis AD011]
 gi|219620969|gb|ACL29126.1| probable DNA helicase II [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 505

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           L +   +++  A        + A AG+GKT  + +R+     +    P+ +L +T +  A
Sbjct: 10  LATLDDAQRSAALAVDGPVRIIAVAGAGKTRTITRRIAYACASGVWDPTRVLAVTFSVKA 69

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETP 128
           A EM  R+  +       +    SA + +++   P+               L+   L   
Sbjct: 70  ANEMRERLDALQVPRGVRASTFHSAALRQMREVWPDICEGPFPDVTEDKSALVAQALYRF 129

Query: 129 GGLK 132
            G++
Sbjct: 130 NGIR 133


>gi|224532974|ref|ZP_03673582.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi WI91-23]
 gi|224512091|gb|EEF82484.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi WI91-23]
          Length = 1169

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|312148305|gb|ADQ30964.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi JD1]
          Length = 1169

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|258623609|ref|ZP_05718602.1| helicase IV [Vibrio mimicus VM573]
 gi|258584097|gb|EEW08853.1| helicase IV [Vibrio mimicus VM573]
          Length = 549

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAE 262

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+   I        E     +           +  + R ++++ L     LK     A+C
Sbjct: 263 RLKNKIGL------EAERLHVNTFHQLGLRILNRVEGRTVIMSPLANDSKLK----QAWC 312

Query: 141 EAIMQQF 147
              +++ 
Sbjct: 313 IDWLKRH 319


>gi|229043074|ref|ZP_04190803.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
 gi|228726259|gb|EEL77487.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
          Length = 630

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 61/190 (32%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                  A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV ++    
Sbjct: 5   EGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRVAKLPGMN 64

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              S  +++                                    T H+    +++    
Sbjct: 65  HAASSYVVA-----------------------------------GTFHSVFLKLLRSQGY 89

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
              I     +A+E+  + +I++  K                     L + +D D ET+++
Sbjct: 90  NQQI-----LANEKHKQIMIKKILKE--------------------LRLKDDYDAETMLA 124

Query: 210 DIISNRTALK 219
            I   +  L 
Sbjct: 125 MISLEKNKLN 134


>gi|223889347|ref|ZP_03623933.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 64b]
 gi|223885033|gb|EEF56137.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 64b]
          Length = 1169

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|195941453|ref|ZP_03086835.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi
           80a]
 gi|312149352|gb|ADQ29423.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi N40]
          Length = 1169

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|216264167|ref|ZP_03436159.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 156a]
 gi|215980640|gb|EEC21447.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 156a]
          Length = 1169

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|219685727|ref|ZP_03540539.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii Far04]
 gi|219672722|gb|EED29749.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii Far04]
          Length = 1169

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT T  A  EM  R+L+ I + 
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTNKATEEMHTRILKAIESA 70

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                    SK   +L    E    L + TI+ F    +  F +
Sbjct: 71  YFG----------------------SKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|225551821|ref|ZP_03772764.1| exodeoxyribonuclease V, beta subunit [Borrelia sp. SV1]
 gi|225371616|gb|EEH01043.1| exodeoxyribonuclease V, beta subunit [Borrelia sp. SV1]
          Length = 1169

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT TK A  EM  R+L++I   
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYSNSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|110680702|ref|YP_683709.1| ATP-dependent DNA helicase [Roseobacter denitrificans OCh 114]
 gi|109456818|gb|ABG33023.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
            denitrificans OCh 114]
          Length = 1770

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 12   ETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
            + ++ +     E ++A D  + +  V A  GSGKT +LV RV  LL +    P  +L L 
Sbjct: 1153 KIVEDLGNKTQESIVADDRASTNVLVLAGPGSGKTRVLVHRVAYLLRIKREDPRGILVLA 1212

Query: 70   HTKAAAAEMSHRVLEIITAWSH 91
            + + AA+E+  R+  ++   + 
Sbjct: 1213 YNRHAASEIRTRLAALVGEDAR 1234


>gi|161503847|ref|YP_001570959.1| DNA helicase IV [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160865194|gb|ABX21817.1| hypothetical protein SARI_01935 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 684

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             S+     +   S  V A AGSGKT +LV R   LL    A    +L L   + AA EM
Sbjct: 198 NSSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGRKAAEEM 257

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             R+ E +      +    S  +  IQ        +SK
Sbjct: 258 DERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 295


>gi|282926721|ref|ZP_06334349.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus
           aureus A9765]
 gi|282592148|gb|EFB97170.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus
           aureus A9765]
          Length = 575

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 43/144 (29%)

Query: 33  SAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           + +V+A  GSGKT +L +++    +  +     ++ +T+T  AA E+  R+     +   
Sbjct: 3   NLYVNACPGSGKTRVLTRKIAYQAIKHDGSLKRIIAITYTNRAAEEIKERL-----SLLS 57

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           + D+I                                  + V TIH FC   +  +P + 
Sbjct: 58  IDDDI---------------------------------NIWVGTIHQFCLEFI-IYPFKM 83

Query: 152 NI---TSHFAIADEEQSKKLIEEA 172
           N+   +  F I D+   +  + + 
Sbjct: 84  NLSRVSKGFTIIDDYTQRAYVSQI 107


>gi|210623662|ref|ZP_03293971.1| hypothetical protein CLOHIR_01921 [Clostridium hiranonis DSM 13275]
 gi|210153427|gb|EEA84433.1| hypothetical protein CLOHIR_01921 [Clostridium hiranonis DSM 13275]
          Length = 776

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 15/183 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAA 75
           I+  + +  +    + +  V A  G+GKT I+ + V  LL  N +    +L LT+  +A 
Sbjct: 4   ITYREDQAPIMEYKSGTMAVPAVPGAGKTFIVTRLVTELLENNINGKEKILILTYMNSAV 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                R+ +++             EI +   ++       K +  L  +  +     V T
Sbjct: 64  NNFKGRIKKLLNE-----KYGEDVEIEENLSEEEINEIKRKNKDTLRRLNNSYE---VMT 115

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+    I+++ P  A +   F IAD+ Q   ++ E  +S L++      E+ KK FY  
Sbjct: 116 IHSLATKIIKENPESAMLNEEFMIADDAQRSIILNECIESYLST------EKGKKYFYYF 169

Query: 196 LEI 198
           +  
Sbjct: 170 INY 172


>gi|255319694|ref|ZP_05360902.1| exonuclease V, beta chain [Acinetobacter radioresistens SK82]
 gi|262380024|ref|ZP_06073179.1| exodeoxyribonuclease V, beta subunit [Acinetobacter radioresistens
           SH164]
 gi|255303223|gb|EET82432.1| exonuclease V, beta chain [Acinetobacter radioresistens SK82]
 gi|262298218|gb|EEY86132.1| exodeoxyribonuclease V, beta subunit [Acinetobacter radioresistens
           SH164]
          Length = 1234

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 82/192 (42%), Gaps = 15/192 (7%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93
            + A+AG+GKT+ L   ++R+L+    P+ ++  T T+AAAAE+  R+   +  A+ + +
Sbjct: 22  LIEASAGTGKTYTLSSLIVRILIEKYLPNQIIATTFTRAAAAELKSRIRSRLVEAYQYFN 81

Query: 94  DEILSAEITKIQGKKPNKSDMSKAR------------HLLITILETPGGLKVQTIHAFCE 141
           D     EI  +   +  K  + +                L  +++    L V T+ +F +
Sbjct: 82  DCQDLTEIEMLHKAEQEKDPLYQVLCKQFSTQVGYVCERLKLVIDQLDELFVSTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            ++++F  E+       +   E +K   ++     L   +    + L        ++ N 
Sbjct: 142 KLLREFAFESGKIERAQLT--EDAKAYSQQIVHDILREWIQAQPQPLIDYLLLSKQLKNT 199

Query: 202 EDIETLISDIIS 213
           +    ++ + ++
Sbjct: 200 DGYLAIVENSLN 211


>gi|219684318|ref|ZP_03539262.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii PBr]
 gi|219672307|gb|EED29360.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii PBr]
          Length = 1169

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT T  A  EM  R+L+ I + 
Sbjct: 11  NTTILIEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTNKATEEMHTRILKAIESA 70

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                    SK   +L    E    L + TI+ F    +  F +
Sbjct: 71  YFG----------------------SKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|294629557|ref|ZP_06708117.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292832890|gb|EFF91239.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 634

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 28/184 (15%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST------L 65
            +D    T  +Q +   P      V+A AG+GKTH LV+R L  L  +  P        +
Sbjct: 5   YLDSPPLTAEQQAVVEQPWDARVLVTAGAGAGKTHTLVRR-LDALCGHEDPEEALEATDI 63

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT ++AAA E+  R+         +  +   A    +  +     D   A       +
Sbjct: 64  LVLTFSRAAARELRERITRHGDRGRRVRAQTFDAWAYGVLVQ--AYPDRDWAATSFDERI 121

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
                             + +  LE+   +     + DE Q   L+ +  +  L   +LD
Sbjct: 122 RAAAEA------------VDEGALESGDSVPPSHVVIDEVQ--DLLGD--RRELVEALLD 165

Query: 184 NNEE 187
             ++
Sbjct: 166 RYQD 169


>gi|70950300|ref|XP_744485.1| helicase  [Plasmodium chabaudi chabaudi]
 gi|56524458|emb|CAH80791.1| helicase, belonging to UvrD family, putative [Plasmodium chabaudi
           chabaudi]
          Length = 658

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 16  LISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           L      EQ+         +  + A  GSGKT  L  R+++ ++      +++C+T    
Sbjct: 33  LFRNLSEEQMKIVQVPLDYNLCIIACPGSGKTSTLTARIIKSIIERKK--SIVCITF-NY 89

Query: 74  AAAEMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           +A ++  ++++ I     L         L      I G K         + +     +  
Sbjct: 90  SAKDLKEKIIKKINCLIDLCTGKDIQNKLFNRNKNIGGTKIRNKKYDINKTMYKNKFKVL 149

Query: 129 G-GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
              + + TIH+FC  I+            F I  E  +  +I+ A  +   S M  N
Sbjct: 150 DTTIFIGTIHSFCRYIL------LKYKGEFKILTESINSNVIKMAFNNFCNSTMYKN 200


>gi|51892445|ref|YP_075136.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856134|dbj|BAD40292.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 631

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 45/174 (25%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71
            +  ++  + + + A  P     ++A AG+GKT  +  R+L L L+ +  P  +L +T +
Sbjct: 7   LLGWLNPAQRQAVTA--PCGHLCINAAAGTGKTTTVAARILWLQLVQDVPPEAILAVTFS 64

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AA A +  RV                                         +L   G +
Sbjct: 65  RAARAHLLDRV------------------------------------EAFTRVLGAGGAV 88

Query: 132 KVQTIHAFCEAIMQQFPLEAN---ITSHFAIAD--EEQSKKLIEEAKKSTLASI 180
              T+H     I++   + A    +   F +     ++   L++E     L  +
Sbjct: 89  PTFTLHGLAYRILR-IAIGAGETWLRPGFGVISVGRDRINPLLQEHAADLLGDL 141


>gi|240169962|ref|ZP_04748621.1| hypothetical protein MkanA1_11664 [Mycobacterium kansasii ATCC
          12478]
          Length = 699

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
          +    ++     P     V A AG+GKT  +  R+  L+ +       +L +T T+ AA 
Sbjct: 11 ALDDEQRQAVLAPRGPLCVLAGAGTGKTRTITHRIAHLVSSGHVAAGQVLAVTFTQRAAG 70

Query: 77 EM 78
          EM
Sbjct: 71 EM 72


>gi|189459925|ref|ZP_03008710.1| hypothetical protein BACCOP_00558 [Bacteroides coprocola DSM 17136]
 gi|189433359|gb|EDV02344.1| hypothetical protein BACCOP_00558 [Bacteroides coprocola DSM 17136]
          Length = 1606

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 40/138 (28%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
            +++ +    +S+ + E +++   +R   V+A  GSGKT +LV ++  LLL  +     LL
Sbjct: 1047 EKYKQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1105

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             LT ++AAA E   R++E+I   +H  +                                
Sbjct: 1106 MLTFSRAAATEFKQRLMELIGNAAHYVE-------------------------------- 1133

Query: 127  TPGGLKVQTIHAFCEAIM 144
                  ++T HA+C  ++
Sbjct: 1134 ------IKTFHAYCFDLL 1145


>gi|291458664|ref|ZP_06598054.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419197|gb|EFE92916.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 637

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 50/175 (28%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
            S++   S     A V A  GSGKT +L +R  RLL +      +L L+ T+A+A E+  
Sbjct: 19  PSQERAVSHGEGPALVLAGPGSGKTLVLTERAARLLQSGVPGEEILILSFTRASAEELRL 78

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R                                             T   L   T+H+  
Sbjct: 79  R--------------------------------------FCRRFPRTGRELCFGTLHSVF 100

Query: 141 EAIMQQFPLEANITSHF---AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            +I+++          F    I  E + ++L+EE  +           EE ++A 
Sbjct: 101 FSILRKRY-------GFGKRNILTEGERQRLLEEILRK--DKRPFPEGEEFRRAL 146


>gi|220928112|ref|YP_002505021.1| UvrD/REP helicase [Clostridium cellulolyticum H10]
 gi|219998440|gb|ACL75041.1| UvrD/REP helicase [Clostridium cellulolyticum H10]
          Length = 708

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 58/193 (30%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80
            ++        S  + A  GSGKT ++V RV  L+     +P ++L LT  KAA  EM  
Sbjct: 28  EQRKAVLTVEGSVLLIAGPGSGKTTVIVNRVYNLIKYERVNPKSILTLTFNKAAQLEMDR 87

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R  ++                                             ++  T+H+FC
Sbjct: 88  RFQKLYGN-------------------------------------HVKEKVQFSTLHSFC 110

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS- 199
             +++ +                  + +   + +    +    N + L K  Y  +  + 
Sbjct: 111 NRVVRDY------------------EIMKGRSLRRIEGTDENVNKKILLKDIYYSINSTK 152

Query: 200 -NDEDIETLISDI 211
            ND++++ LI++I
Sbjct: 153 INDDELDNLINEI 165


>gi|254682228|ref|ZP_05146090.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. CNEVA-9066]
          Length = 631

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 36/122 (29%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84
                       A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+ +RV  
Sbjct: 1   AVRTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRVAN 60

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           +       S  +++                                    T H+    ++
Sbjct: 61  LPGMNHAASSYVVA-----------------------------------GTFHSVFLKLL 85

Query: 145 QQ 146
           + 
Sbjct: 86  RS 87


>gi|237739799|ref|ZP_04570280.1| DNA helicase II [Fusobacterium sp. 2_1_31]
 gi|229423407|gb|EEO38454.1| DNA helicase II [Fusobacterium sp. 2_1_31]
          Length = 929

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 56/199 (28%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           S+    QL A +       + A  G+GKT  LV+R + +L+        ++  T T  AA
Sbjct: 9   SELNERQLEAVNTVKGPVVIIAGPGTGKTKTLVERTVNILVNEKVEAKKIMITTFTNKAA 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+ E +   +   D                                    + + T
Sbjct: 69  RELELRINESLEKANVNID---------------------------------ISDMYIGT 95

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+    ++++    ++   +F                      +M  + E+    +  +
Sbjct: 96  MHSIWTRLIEENITYSDFFDNF---------------------ELMSGDYEQHFFIYSRL 134

Query: 196 LEISNDEDIETLISDIISN 214
            E    ED +    ++ +N
Sbjct: 135 KEYKKLEDYQKFFDNLSNN 153


>gi|228957601|ref|ZP_04119351.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228802050|gb|EEM48917.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 630

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 61/190 (32%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                  A AGSGKT +L  RV  L+ +   HP  +L LT T+ AA E+  RV ++    
Sbjct: 5   EGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRVAKLPGMN 64

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              S  +++                                    T H+    +++    
Sbjct: 65  HAASSYVVA-----------------------------------GTFHSVFLKLLRSQGY 89

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
              I     +A+E+  + +I++  K                     L + +D D ET+++
Sbjct: 90  NQQI-----LANEKHKQIMIKKILKE--------------------LRLKDDYDAETMLA 124

Query: 210 DIISNRTALK 219
            I   +  L 
Sbjct: 125 MISLEKNKLN 134


>gi|269796037|ref|YP_003315492.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098222|gb|ACZ22658.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542]
          Length = 699

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           L +    ++ +A   T    V A AG+GKT  +  R+   +    + P+T+L +T T  A
Sbjct: 31  LEALDPDQRAVAEALTGPVCVLAGAGTGKTRAITHRIAYGVRTGMYTPTTVLAVTFTARA 90

Query: 75  AAEMSHRVLEI 85
           A EM  R+ ++
Sbjct: 91  AGEMRTRLRDL 101


>gi|154507581|ref|ZP_02043223.1| hypothetical protein ACTODO_00061 [Actinomyces odontolyticus ATCC
          17982]
 gi|153797215|gb|EDN79635.1| hypothetical protein ACTODO_00061 [Actinomyces odontolyticus ATCC
          17982]
          Length = 674

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          L +    ++ +A+       V A AG+GKT  +  R+       A  PS +L +T T+ A
Sbjct: 10 LEALDPDQRAVATQVAGPLAVLAGAGTGKTRAITYRIAYGAAVGAFDPSNVLAVTFTQRA 69

Query: 75 AAEMSHRVLEI 85
          A EM HR+ ++
Sbjct: 70 AFEMRHRLAQL 80


>gi|256372350|ref|YP_003110174.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008934|gb|ACU54501.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 989

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 31/145 (21%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           +    Q  A+       V A AG+GKT  +V+R LRL+     PS ++ +T T       
Sbjct: 2   ELTQAQDRAARHQGPLAVIAGAGTGKTLTMVERYLRLVADGVEPSAIVAVTFT------- 54

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                         + E+ +     + G                ++  +     + T   
Sbjct: 55  -----------RAAAAELRARVRAALLGND-------------ASLGASVDAALITTFDG 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEE 163
               +++ +P   ++ +   +AD E
Sbjct: 91  LNHHLVRAYPWAHDLGTDVEVADPE 115


>gi|312171298|emb|CBX79557.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Erwinia amylovora ATCC BAA-2158]
          Length = 1134

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
               +L +T T+AA AE+  R+   I           S  +  +       +D+ +A  +
Sbjct: 12  SVEEILVVTFTEAATAELRGRIRANIHELRIACIRGESPNLM-LAALMAEIADLPQAASV 70

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           L+          + TIH FC+ ++     E+ +     + ++E    L   A       
Sbjct: 71  LLAAERQMDEAGIFTIHGFCQRMLNLNAFESGMLFEQELLEDE--TPLRRRAAADFWRR 127


>gi|296140735|ref|YP_003647978.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
 gi|296028869|gb|ADG79639.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
          Length = 697

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
          +    +Q     P     V A AG+GKT  +  R+   +         +L +T T  AA 
Sbjct: 4  ALDPEQQEAVLAPRGPVCVLAGAGTGKTRTITHRIAHQVSTGHVAAGQVLAVTFTSRAAG 63

Query: 77 EMS 79
          EM 
Sbjct: 64 EMR 66


>gi|261335293|emb|CBH18287.1| ATP-dependent DNA helicase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 845

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 36/139 (25%)

Query: 12  ETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           E   ++S   + Q +A   +P++   + A AGSGKT  +  R+  L+L N  P  +L L 
Sbjct: 23  EIEQILSALDNSQRVAVCENPSQPLLIIAGAGSGKTLTMASRIAFLILNNVAPQNILGLC 82

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            ++ AA  +  RV  ++                      P  + +++             
Sbjct: 83  FSRQAAETLRGRVASVL---------------------PPAMAGLAQ------------- 108

Query: 130 GLKVQTIHAFCEAIMQQFP 148
            LK++T HAF    ++++ 
Sbjct: 109 KLKLKTFHAFGLECLRRYA 127


>gi|242240110|ref|YP_002988291.1| DNA helicase IV [Dickeya dadantii Ech703]
 gi|242132167|gb|ACS86469.1| UvrD/REP helicase [Dickeya dadantii Ech703]
          Length = 685

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           E+++      S+     +   +  V A AGSGKT +LV R   LL +  A P  +L L  
Sbjct: 190 ESVESSPLNDSQSRAVINGEDAVLVLAGAGSGKTSVLVARAAWLLRSAQARPEQILLLAF 249

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            + AA EM+ RV E +      +    +  +  IQ    N+  +S+
Sbjct: 250 GRQAAEEMNGRVRERLHTEDIQAKTFHALALHIIQQCSRNEPVISR 295


>gi|306831339|ref|ZP_07464499.1| UvrD/REP helicase subfamily [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426575|gb|EFM29687.1| UvrD/REP helicase subfamily [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 609

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 63/162 (38%), Gaps = 42/162 (25%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
           +    Q  A D   +  V A  GSGKT +L  + + LL    A P  L CLT+++ AA E
Sbjct: 14  EKDEYQKAAFDSQSNTVVLAGPGSGKTTVLTLKAMHLLNGVIAEPRGLACLTYSREAARE 73

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
            + R+ E+                                       L     + + T+H
Sbjct: 74  FTERLKEL--------------------------------------GLVRGNNIFLGTVH 95

Query: 138 AFCE-AIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176
           +FC   I+ +F      NI +   IA E+Q  KL E AKK+ 
Sbjct: 96  SFCLTEILGKFCDVYSLNIPTPIKIASEKQRAKLFEIAKKNV 137


>gi|74025512|ref|XP_829322.1| ATP-dependent DNA helicase [Trypanosoma brucei TREU927]
 gi|70834708|gb|EAN80210.1| ATP-dependent DNA helicase, putative [Trypanosoma brucei]
          Length = 843

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 36/139 (25%)

Query: 12  ETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           E   ++S   + Q +A   +P++   + A AGSGKT  +  R+  L+L N  P  +L L 
Sbjct: 23  EIEQILSALDNSQRVAVCENPSQPLLIIAGAGSGKTLTMASRIAFLILNNVAPQNILGLC 82

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            ++ AA  +  RV  ++                      P  + +++             
Sbjct: 83  FSRQAAETLRGRVASVL---------------------PPAMAGLAQ------------- 108

Query: 130 GLKVQTIHAFCEAIMQQFP 148
            LK++T HAF    ++++ 
Sbjct: 109 KLKLKTFHAFGLECLRRYA 127


>gi|325978250|ref|YP_004287966.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325178178|emb|CBZ48222.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 609

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 63/162 (38%), Gaps = 42/162 (25%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
           +    Q  A D   +  V A  GSGKT +L  + + LL    A P  L CLT+++ AA E
Sbjct: 14  EKDEYQKAAFDSQSNTVVLAGPGSGKTTVLTLKAMHLLNGVIAEPRGLACLTYSREAARE 73

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
            + R+ E+                                       L     + + T+H
Sbjct: 74  FTERLKEL--------------------------------------GLVRGNNIFLGTVH 95

Query: 138 AFCE-AIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176
           +FC   I+ +F      NI +   IA E+Q  KL E AKK+ 
Sbjct: 96  SFCLTEILGKFCDVYSLNIPTPIKIASEKQRAKLFEIAKKNV 137


>gi|254507658|ref|ZP_05119790.1| helicase IV [Vibrio parahaemolyticus 16]
 gi|219549355|gb|EED26348.1| helicase IV [Vibrio parahaemolyticus 16]
          Length = 688

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      ++Q        +  V A AGSGKT +L  RV  LL ++ A    +L L   +
Sbjct: 195 IESSPLNHTQQQAVLLNDDNNLVLAGAGSGKTSVLTARVAYLLQSHLAQAEQILMLAFGR 254

Query: 73  AAAAEMSHRVLEIITAWSH 91
            AA EM  R+ + I   + 
Sbjct: 255 EAANEMKARLNDKIGLSAE 273


>gi|330860768|emb|CBX71057.1| helicase IV [Yersinia enterocolitica W22703]
          Length = 373

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
           Q+  ++++     +S+     +   S  V A AGSGKT +LV R   LL  N   P  +L
Sbjct: 186 QDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIIT-------AWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            L   + AA EM+ R+ + +         +  L+ +I+     K       +SD    R 
Sbjct: 246 LLAFGRQAADEMNSRIKQRLGVDDIQAKTFHALALQIIQQGSRKTPVISKLESDSQARRS 305

Query: 120 LLIT 123
           LLI 
Sbjct: 306 LLIK 309


>gi|307244586|ref|ZP_07526690.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
           stomatis DSM 17678]
 gi|306491967|gb|EFM64016.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
           stomatis DSM 17678]
          Length = 623

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 83/223 (37%), Gaps = 60/223 (26%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           ++   K++            V A  GSGKT I+ QR++ ++L +   P+ +L ++ TKA+
Sbjct: 1   MVKLNKNQAKAVVHIHGPCMVLAGPGSGKTRIISQRIVSMVLDHDIPPTRILAISFTKAS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R        ++  DE L                                 +   
Sbjct: 61  SLEMKKR------TLAYGKDERL-------------------------------NKVNFG 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+    I++++   A +       D+        +  +S L  + + N          
Sbjct: 84  TFHSSFFRILRRY---AGVG-----LDDLLLDPDRFKLVRSILKYLKISNY--------- 126

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                ND+D+  L+++I   +  L     + S+ + ++I +K+
Sbjct: 127 -----NDDDVLDLLNEISLVKNELLDYMAYDSHCFEQEIFQKA 164


>gi|288905265|ref|YP_003430487.1| ATP-dependent DNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731991|emb|CBI13556.1| putative ATP-dependent DNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 609

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 63/162 (38%), Gaps = 42/162 (25%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
           +    Q  A D   +  V A  GSGKT +L  + + LL    A P  L CLT+++ AA E
Sbjct: 14  EKDEYQKAAFDSQSNTVVLAGPGSGKTTVLTLKAMHLLNGVIAEPRGLACLTYSREAARE 73

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
            + R+ E+                                       L     + + T+H
Sbjct: 74  FTERLKEL--------------------------------------GLVRGNNIFLGTVH 95

Query: 138 AFCE-AIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176
           +FC   I+ +F      NI +   IA E+Q  KL E AKK+ 
Sbjct: 96  SFCLTEILGKFCDVYSLNIPTPIKIASEKQRAKLFEIAKKNV 137


>gi|84625870|ref|YP_453242.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84369810|dbj|BAE70968.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1355

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 71/232 (30%), Gaps = 73/232 (31%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA-------------------- 73
            + A+AG+GKT  L     RL++        +L +T T+A                    
Sbjct: 20  LIEASAGTGKTFTLATLFTRLVVERGVRIGQILAVTFTEAATQELRRRIRERLVLAASLV 79

Query: 74  ---------AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK----------SDM 114
                    AA+E        I      S  + +A+        P++          + +
Sbjct: 80  PDAPVGAALAASE-----SPAIQLPGATSASVAAAQTATDLADDPSRPGPLLHESPDALL 134

Query: 115 SKA----------------RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN------ 152
           ++A                R  L   +E      V TIH FC  ++++  LE+       
Sbjct: 135 TRAILVTHLTGGSETPAALRRRLQQAVEEIDLAAVFTIHGFCARVLREHALESGQAFAAP 194

Query: 153 --ITSHFAIADEEQSKKLIEEAKKSTLAS----IMLDNNEELKKAFYEILEI 198
             + +   +  E  +    + A  + +A     +     E L      ++  
Sbjct: 195 ELLANDRQLLGEVAADLWRQRAADAAMAEDLIALWSGGPEALASDLRALVRH 246


>gi|315927499|gb|EFV06836.1| ATP-dependent DNA helicase PcrA [Campylobacter jejuni subsp.
          jejuni DFVF1099]
          Length = 305

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
            S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8  NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79 SHRVLEIITA 88
           HR L  +  
Sbjct: 68 RHRALNFLQG 77


>gi|304406520|ref|ZP_07388176.1| UvrD/REP helicase [Paenibacillus curdlanolyticus YK9]
 gi|304344578|gb|EFM10416.1| UvrD/REP helicase [Paenibacillus curdlanolyticus YK9]
          Length = 772

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 37/129 (28%)

Query: 20  TKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
              +QL A           A AGSGKT  L  R   L+ +       LL +T ++ AA E
Sbjct: 67  LNDQQLQAVRHGEGPLLTIAGAGSGKTTTLACRAAYLIAVRRVPARQLLLVTFSRKAADE 126

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R                   +  + G     +   +AR                T H
Sbjct: 127 MKLR-------------------LAGLPGISTTTAKSIEAR----------------TFH 151

Query: 138 AFCEAIMQQ 146
           +FC  ++++
Sbjct: 152 SFCLQLLRR 160


>gi|330469972|ref|YP_004407715.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812943|gb|AEB47115.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 712

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAA 74
           L      ++   + P     V A AG+GKT  +  R+  R L        +L +T T  A
Sbjct: 11  LAGLDPEQRSAVTAPAGPVCVLAGAGTGKTRAVTSRIAYRALTGEISARHVLAVTFTARA 70

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           AAE+ HR+ + +      +    +A + +++   P   D      LL +
Sbjct: 71  AAELRHRLAQ-LGVAGVQARTFHAAALRQVRYFAPRLLDGRAMPELLDS 118


>gi|84501254|ref|ZP_00999459.1| helicase IV [Oceanicola batsensis HTCC2597]
 gi|84390545|gb|EAQ03033.1| helicase IV [Oceanicola batsensis HTCC2597]
          Length = 894

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 12/159 (7%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTL 65
           +++  +T++ +  T  ++L       +  V A AGSGKT ++  +   L+ A    PS L
Sbjct: 114 WKDFFDTVESMPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRKPSEL 173

Query: 66  LCLTHTKAAAAEMSHRVLEI--ITAWSHLSDEILSAEITKIQGKKP--------NKSDMS 115
           L L   K AA EMS R+     +   +     +    I +++G+KP        +K+ +S
Sbjct: 174 LLLAFAKDAATEMSERIEARCGVPVAARTFHALAYEIIGEVEGEKPPLAPTATDDKAFLS 233

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
             + +L  I+ T   +  QT+  +       FP E +  
Sbjct: 234 LMKEILRHIVATASEIA-QTVTGWFAGFFDDFPTEWDFN 271


>gi|254387026|ref|ZP_05002304.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
 gi|194345849|gb|EDX26815.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
          Length = 533

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 41/172 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +   P     V A  G+GKT  LV+     + A   P+ +L LT ++ AA E+  R
Sbjct: 69  AQRAVVDHPGGPLLVLAGPGTGKTTTLVEAAAARVEAGTDPARILILTFSRKAAVELRDR 128

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
               +                                                T H+FC 
Sbjct: 129 AALRLGGARAPQA---------------------------------------TTFHSFCY 149

Query: 142 AIMQQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            +++    + ++ +    +    +   ++    +       +   ++L+ A 
Sbjct: 150 GLVRAH-QDTDLFADPLRLLSGPEQDVMVRTLLEGQRRQRSIRWPDDLRAAL 200


>gi|238762127|ref|ZP_04623099.1| Helicase IV (75 kDa helicase) [Yersinia kristensenii ATCC 33638]
 gi|238699474|gb|EEP92219.1| Helicase IV (75 kDa helicase) [Yersinia kristensenii ATCC 33638]
          Length = 684

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
           Q+  ++++     +S+     +   S  V A AGSGKT +LV R   LL  N   P  +L
Sbjct: 186 QDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIIT-------AWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            L   + AA EM+ R+ + +         +  L+ +I+     K+      +SD    R 
Sbjct: 246 LLAFGRQAADEMNSRIKQRLGVDDIQAKTFHALALQIIQQGSRKMPVISQLESDSQARRS 305

Query: 120 LLIT 123
           LLI 
Sbjct: 306 LLIK 309


>gi|57167988|ref|ZP_00367127.1| DNA helicase II (uvrD) [Campylobacter coli RM2228]
 gi|57020362|gb|EAL57031.1| DNA helicase II (uvrD) [Campylobacter coli RM2228]
          Length = 665

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 40/143 (27%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
             + A AGSGKT  +  R+  ++     P+   L LT T  AA+ M +R L ++ +  + 
Sbjct: 1   MLILAGAGSGKTKTITTRLAYMIGEVGIPAINTLTLTFTNKAASVMKNRALSLLNSNENP 60

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                                                     T H F    ++       
Sbjct: 61  LL---------------------------------------CTFHKFGLLFLKLHIERLG 81

Query: 153 ITSHFAIADEEQSKKLIEEAKKS 175
             ++F I D + SKK+++E    
Sbjct: 82  RKNNFIIIDNDDSKKILKELIND 104


>gi|188574576|ref|YP_001911505.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188519028|gb|ACD56973.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1357

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 71/232 (30%), Gaps = 73/232 (31%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA-------------------- 73
            + A+AG+GKT  L     RL++        +L +T T+A                    
Sbjct: 20  LIEASAGTGKTFTLATLFTRLVVERGVRIGQILAVTFTEAATQELRRRIRERLVLAASLV 79

Query: 74  ---------AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK----------SDM 114
                    AA+E        I      S  + +A+        P++          + +
Sbjct: 80  PDAPVEAALAASE-----SPAIQLPGATSASVAAAQTATDLADDPSRPGPLLHEAPDALL 134

Query: 115 SKA----------------RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN------ 152
           ++A                R  L   +E      V TIH FC  ++++  LE+       
Sbjct: 135 TRAILVTHLTGGSETPAALRRRLQQAVEEIDLAAVFTIHGFCARVLREHALESGQAFAAP 194

Query: 153 --ITSHFAIADEEQSKKLIEEAKKSTLAS----IMLDNNEELKKAFYEILEI 198
             + +   +  E  +    + A  + +A     +     E L      ++  
Sbjct: 195 ELLANDRQLLGEVAADLWRQRAADAAMAEDLIALWSGGPEALASDLRALVRH 246


>gi|58584093|ref|YP_203109.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428687|gb|AAW77724.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1366

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 71/232 (30%), Gaps = 73/232 (31%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA-------------------- 73
            + A+AG+GKT  L     RL++        +L +T T+A                    
Sbjct: 29  LIEASAGTGKTFTLATLFTRLVVERGVRIGQILAVTFTEAATQELRRRIRERLVLAASLV 88

Query: 74  ---------AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK----------SDM 114
                    AA+E        I      S  + +A+        P++          + +
Sbjct: 89  PDAPVEAALAASE-----SPAIQLPGATSASVAAAQTATDLADDPSRPGPLLHEAPDALL 143

Query: 115 SKA----------------RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN------ 152
           ++A                R  L   +E      V TIH FC  ++++  LE+       
Sbjct: 144 TRAILVTHLTGGSETPAALRRRLQQAVEEIDLAAVFTIHGFCARVLREHALESGQAFAAP 203

Query: 153 --ITSHFAIADEEQSKKLIEEAKKSTLAS----IMLDNNEELKKAFYEILEI 198
             + +   +  E  +    + A  + +A     +     E L      ++  
Sbjct: 204 ELLANDRQLLGEVAADLWRQRAADAAMAEDLIALWSGGPEALASDLRALVRH 255


>gi|298528352|ref|ZP_07015756.1| ATP-dependent DNA helicase, RecQ family [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512004|gb|EFI35906.1| ATP-dependent DNA helicase, RecQ family [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1702

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 23   EQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
            ++ +   P  ++  V A  GSGKT ++V R+  L+ +    P  +L +   ++A AEM  
Sbjct: 1094 QRGIVEAPAEKNMLVVAGPGSGKTRVIVHRMAYLIKVLKVRPYRILAVAFNRSAVAEMRR 1153

Query: 81   RVLEIITA 88
            R+ +++  
Sbjct: 1154 RLKDLLGK 1161


>gi|296394545|ref|YP_003659429.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296181692|gb|ADG98598.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 473

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
          L    + ++   + P     V A AGSGKT +L +R+  L+      P  +L ++ T  A
Sbjct: 5  LRGLDERQRCAVAAPRGPVRVLAGAGSGKTRVLTRRIAHLVASEQVRPGEVLAVSFTVRA 64

Query: 75 AAEMSHRV 82
          A E+  R+
Sbjct: 65 AGELRARL 72


>gi|332162162|ref|YP_004298739.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318606214|emb|CBY27712.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666392|gb|ADZ43036.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 684

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
           Q+  ++++     +S+     +   S  V A AGSGKT +LV R   LL  N   P  +L
Sbjct: 186 QDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            L   + AA EM+ R+ + +      +    +  +  IQ        +SK
Sbjct: 246 LLAFGRQAADEMNSRIKQRLGVDDIQAKTFHALALQIIQQGSRKTPVISK 295


>gi|314966451|gb|EFT10550.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL082PA2]
 gi|315103760|gb|EFT75736.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL050PA2]
          Length = 1078

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMKNLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++  ++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGRAGFTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDYD 165


>gi|271969553|ref|YP_003343749.1| superfamily I DNA and RNA helicase-like protein
          [Streptosporangium roseum DSM 43021]
 gi|270512728|gb|ACZ91006.1| Superfamily I DNA and RNA helicase-like protein
          [Streptosporangium roseum DSM 43021]
          Length = 689

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
          L      ++ +A        V A AG+GKT  +  R+   + +      ++L +T T  A
Sbjct: 7  LAGLDPEQREVAQAVRGPVCVLAGAGTGKTRAITHRIAHAVRSGVVDAQSVLAVTFTTRA 66

Query: 75 AAEMSHRVLEI 85
          A E+  R+ ++
Sbjct: 67 AGELRQRLRQL 77


>gi|30248124|ref|NP_840194.1| recQ; ATP-dependent DNA helicase [Nitrosomonas europaea ATCC 19718]
 gi|30180009|emb|CAD84004.1| recQ; ATP-dependent DNA helicase [Nitrosomonas europaea ATCC 19718]
          Length = 1457

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           T  + ++A D   +  V A  GSGKT ++V R+  LL +     ++++ LT  + AA E+
Sbjct: 850 TTQKLIVADDDDINRLVLAGPGSGKTRVIVHRIAYLLRVRRVPATSIVALTFNRHAANEI 909

Query: 79  SHRVLEIITA----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
             R+L ++ A     S L+   ++  +T  + ++ +  D    + +L   +E   G
Sbjct: 910 RKRLLALVGADAYGVSVLTYHSMAMRLTGTRFERGDTVDERALKRVLSDAVELLEG 965


>gi|123441896|ref|YP_001005879.1| DNA helicase IV [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088857|emb|CAL11663.1| putative helicase IV [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 684

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
           Q+  ++++     +S+     +   S  V A AGSGKT +LV R   LL  N   P  +L
Sbjct: 186 QDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            L   + AA EM+ R+ + +      +    +  +  IQ        +SK
Sbjct: 246 LLAFGRQAADEMNSRIKQRLGVDDIQAKTFHALALQIIQQGSRKTPVISK 295


>gi|314923613|gb|EFS87444.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL001PA1]
          Length = 1078

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMKNLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++  ++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGRAGFTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDYD 165


>gi|327327273|gb|EGE69049.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
           HL103PA1]
          Length = 1078

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMKNLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++  ++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGRAGFTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDYD 165


>gi|238795895|ref|ZP_04639408.1| Helicase IV (75 kDa helicase) [Yersinia mollaretii ATCC 43969]
 gi|238720358|gb|EEQ12161.1| Helicase IV (75 kDa helicase) [Yersinia mollaretii ATCC 43969]
          Length = 684

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
           Q+  + ++     +S+     +   S  V A AGSGKT +LV R   LL  N   P  +L
Sbjct: 186 QDFFQNVESSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            L   + AA EM+ R+ + +      +    +  +  IQ        +SK
Sbjct: 246 LLAFGRQAADEMNSRIKQRLAVDDIQAKTFHAIALQIIQQGSRKTPVISK 295


>gi|315092772|gb|EFT64748.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL060PA1]
          Length = 1078

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMKNLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++  ++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGRAGFTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDYD 165


>gi|94676604|ref|YP_588976.1| exodeoxyribonuclease V, beta subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219754|gb|ABF13913.1| exodeoxyribonuclease V, beta subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 1183

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 26/165 (15%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRV 82
           +   + A+AG+GKT+ LV   LRLLL              + +L +T T+AA  E+  R+
Sbjct: 10  QHCLIEASAGTGKTYTLVILYLRLLLGIGGLSAYHRPLSITEILLVTFTEAAIKEIRSRI 69

Query: 83  LEIITAW------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
            + I          + +D +L+A + +I+        +  A + L+   +      + TI
Sbjct: 70  HDTIHRLRISCVCGYSNDPLLAALLLQIKN-------IPLAINQLLAAEQQINEAAIFTI 122

Query: 137 HAFCEAIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           H FC+ ++      LE++  S   + +++    L+++        
Sbjct: 123 HGFCQRMLNINYNLLESSFWSQKQLLEDDTH--LLQQVVTDFWRR 165


>gi|116050720|ref|YP_790459.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585941|gb|ABJ11956.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1707

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 20   TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            T  + ++A D   +  V A  GSGKT ++V R+  LL +     ++++ LT  + AA E+
Sbjct: 1100 TTQKLIVADDDDINRLVLAGPGSGKTRVIVHRIAYLLRVRRVPATSIVALTFNRHAANEI 1159

Query: 79   SHRVLEIITA----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
              R+L ++ A     S L+   ++  +T  + ++    D    + +L   +E   G
Sbjct: 1160 RKRLLALVGADAYGVSVLTYHSMAMRLTGTRFERGATVDERALKQVLSDAVELLEG 1215


>gi|172056743|ref|YP_001813203.1| UvrD/REP helicase [Exiguobacterium sibiricum 255-15]
 gi|171989264|gb|ACB60186.1| UvrD/REP helicase [Exiguobacterium sibiricum 255-15]
          Length = 724

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 38/127 (29%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81
           ++           + A+ GSGKT  L  ++  L+L    +P ++L LT +KAAA EM+ R
Sbjct: 21  QRQAIEHDQGPLLLLASPGSGKTTTLNFKIAYLILEKKVNPRSILGLTFSKAAAHEMAER 80

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
             +                                       ++ T       TIH+F  
Sbjct: 81  FYDW-----------------------------------FHHLIGTTASF--STIHSFAF 103

Query: 142 AIMQQFP 148
            +++ + 
Sbjct: 104 QVVRDYA 110


>gi|330469985|ref|YP_004407728.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812956|gb|AEB47128.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 1190

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 38/173 (21%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +  + +       V    G+GKT  LV+ V   +     P  +L LT ++  AA++ HR+
Sbjct: 84  QAEVVAHTDGPMLVLGGPGTGKTSTLVEAVASRVAEGVDPERILVLTFSRRGAADLRHRI 143

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
              I A                 G++  +  +                  V+T  A+   
Sbjct: 144 EARIAA----------------DGQRVLREPL------------------VRTFPAYAFG 169

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN---NEELKKAF 192
           ++++   E        +    +   +I E           D     E+L+ A 
Sbjct: 170 LLRRAAAERG-EPSPRLLTGPEQDLIIRELLDVVGEESGDDPVGWPEDLRPAL 221


>gi|257052802|ref|YP_003130635.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691565|gb|ACV11902.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 916

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 66/198 (33%), Gaps = 51/198 (25%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           Y N F +  E    +++ + + ++ +D      V A AG+GKT +L  R+   +     P
Sbjct: 141 YENLFTDIDEADHDLNRDQRKAVVRND--EYNQVIAGAGTGKTLVLTHRIAYQIERGVDP 198

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +  +T T+ A  E+  R+ E                                      
Sbjct: 199 DRIAAVTLTRNARDEIQKRLDERFGIT--------------------------------- 225

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
                   + V+T H+F   I +Q         H +  D+   +  +EE  +  L     
Sbjct: 226 -------EVTVETFHSFANGIARQAT-----DGHRSTIDDRDRRNFVEERIRDKLD---- 269

Query: 183 DNNEELKKAFYEILEISN 200
            ++    + + + L   +
Sbjct: 270 GDDAAFARHYRQFLTHYS 287


>gi|257092005|ref|YP_003165646.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257044529|gb|ACV33717.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1741

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 60/127 (47%), Gaps = 3/127 (2%)

Query: 8    QEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65
            Q   + +++++  +  +++A +  + +  V A  GSGKT +LV R+  L+ +   +P  +
Sbjct: 1091 QSWHDIVEVLNNRQQREIVADERESTNVLVLAGPGSGKTRVLVHRIAYLIRVRRENPHGI 1150

Query: 66   LCLTHTKAAAAEMSHRVLEIITAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            L L + + AA ++  R+ E+I   +  ++   L A   ++ G      +      L   I
Sbjct: 1151 LALAYNRHAAVQIRQRLGELIGDDARGVAVLTLHALAMRLAGASLATQNGGTDGDLFKDI 1210

Query: 125  LETPGGL 131
            ++    L
Sbjct: 1211 IDQAVNL 1217


>gi|224531711|ref|ZP_03672343.1| exodeoxyribonuclease V, beta subunit [Borrelia valaisiana VS116]
 gi|224511176|gb|EEF81582.1| exodeoxyribonuclease V, beta subunit [Borrelia valaisiana VS116]
          Length = 1169

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTH+L   V+ L+       + +L LT T+ A  EM  R+L+ I   
Sbjct: 11  NTTILIEASAGTGKTHVLENVVISLMQNKLYSINEILVLTFTRKATEEMHTRILKAIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NTYFNSKTNGVLKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|153002469|ref|YP_001368150.1| UvrD/REP helicase [Shewanella baltica OS185]
 gi|151367087|gb|ABS10087.1| UvrD/REP helicase [Shewanella baltica OS185]
          Length = 996

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 66/224 (29%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           F ++ E ++    T+ ++        +  + A AG+GKT ++V R   LL +  A    +
Sbjct: 197 FADYFEHVESNPLTEKQRRACIIDDNNNLLLAGAGTGKTSVMVGRAGYLLKSGQAKADEI 256

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L L + + AA EM  R+   +                                       
Sbjct: 257 LLLAYGRKAADEMDERIKNKLGT------------------------------------- 279

Query: 126 ETPGGLKVQTIHAFCEAIM----QQFPLEANITSHFAIADEEQSKKLI----------EE 171
               G+K  T H+    I+    +  P   +++     A+++++K+L           +E
Sbjct: 280 ---EGIKASTFHSLGLKIIADVERAKP---SLSPW---AEDDKAKELWVHNTLETLIEDE 330

Query: 172 AKKSTLASIMLDNNEELKKAFY-----EILEISNDEDIETLISD 210
           A +  L           K  F      E  +  ND DI TL  +
Sbjct: 331 AYRKQLFEYFSRFYYVEKSPFEFEVEGEYFQYLNDNDIRTLKGE 374


>gi|50842796|ref|YP_056023.1| exodeoxyribonuclease V beta chain [Propionibacterium acnes
           KPA171202]
 gi|50840398|gb|AAT83065.1| exodeoxyribonuclease V beta chain [Propionibacterium acnes
           KPA171202]
 gi|315105908|gb|EFT77884.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL030PA1]
          Length = 1078

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMKNLLLVTFNRSAARELRGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++  ++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGRAGFTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDYD 165


>gi|225388765|ref|ZP_03758489.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme
          DSM 15981]
 gi|225045172|gb|EEG55418.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme
          DSM 15981]
          Length = 609

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          ++  +++          A + A  GSGKT ++  R+  L      +PS++L +T T+AAA
Sbjct: 1  MAFNEAQLKAIRHGDGPALILAGPGSGKTTVITNRIRFLTEEEGVNPSSILVITFTRAAA 60

Query: 76 AEMSHR 81
           EM  R
Sbjct: 61 TEMQKR 66


>gi|212715498|ref|ZP_03323626.1| hypothetical protein BIFCAT_00395 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661580|gb|EEB22155.1| hypothetical protein BIFCAT_00395 [Bifidobacterium catenulatum DSM
           16992]
          Length = 502

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
           E +D +   +     A D      + A AG+GKT  + +R+       A +P + + +T 
Sbjct: 10  EILDGLDDAQRAAATAVD--GPVRIIAGAGAGKTRTVTRRIAYACATKAWNPRSTMAVTF 67

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN 110
           +  AAAEM  R+ ++  A    +    SA + +++   P+
Sbjct: 68  SVKAAAEMRSRLSKLDVAADVKAATFHSAALHQLRQIWPD 107


>gi|293189251|ref|ZP_06607974.1| putative DNA helicase II [Actinomyces odontolyticus F0309]
 gi|292821714|gb|EFF80650.1| putative DNA helicase II [Actinomyces odontolyticus F0309]
          Length = 674

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          L +    ++ +A+       V A AG+GKT  +  R+       A  PS +L +T T+ A
Sbjct: 10 LEALDPDQRAVATQVAGPLAVLAGAGTGKTRAITYRIAYGADVGAFDPSNVLAVTFTQRA 69

Query: 75 AAEMSHRVLEI 85
          A EM HR+ ++
Sbjct: 70 AFEMRHRLAQL 80


>gi|206577834|ref|YP_002239397.1| helicase IV [Klebsiella pneumoniae 342]
 gi|206566892|gb|ACI08668.1| helicase IV [Klebsiella pneumoniae 342]
          Length = 684

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              ++   + ++      S+     +  RS  V A AGSGKT +LV R   LL    A  
Sbjct: 182 LEQYRGFFDGVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAAA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM  R+ E + +    +    S  +  IQ        +SK
Sbjct: 242 EQILLLAFGRQAAQEMDARIRERLASDDITARTFHSLALHIIQQGSKKVPTISK 295


>gi|6900322|emb|CAB71343.1| putative ATP-dependent nuclease [Lactobacillus delbrueckii subsp.
          bulgaricus]
          Length = 64

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
          +  T  +        +   VSA+AGSGKT +LV+RV+R ++  +   + LL +T T+AAA
Sbjct: 3  VKYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62

Query: 76 AE 77
          +E
Sbjct: 63 SE 64


>gi|88856791|ref|ZP_01131445.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
 gi|88813959|gb|EAR23827.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
          Length = 563

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
            + ++ +D + + + +   A        + A AG+GKT  +  R+   +      P  ++
Sbjct: 3   LDANQLLDALDEGQRQ--AAETLLGPVCLLAGAGTGKTRAITHRIAYGVATGVYPPGRVM 60

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
            LT T  AA E+  R+   + A    +    ++ ++++    P
Sbjct: 61  ALTFTNRAAGELRTRLR-TLGAEGVAARTFHASALSQLNAFWP 102


>gi|325279041|ref|YP_004251583.1| ATP-dependent DNA helicase, RecQ family [Odoribacter splanchnicus DSM
            20712]
 gi|324310850|gb|ADY31403.1| ATP-dependent DNA helicase, RecQ family [Odoribacter splanchnicus DSM
            20712]
          Length = 1655

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 24   QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82
            ++++   +R   V+A  GSGKT +LV ++  LLL  +     LL LT ++AAA E   R+
Sbjct: 1107 EIISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQRL 1166

Query: 83   LEIITAWSHLSD 94
            +E+I   +H  +
Sbjct: 1167 MELIGNAAHFVE 1178


>gi|56964274|ref|YP_176005.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16]
 gi|56910517|dbj|BAD65044.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii
           KSM-K16]
          Length = 763

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++   ++            + A AG GKT +L  R   ++   N HP+ +  +T T  A
Sbjct: 145 GLTLDDAQWKAVKHIDGPLLLLAGAGCGKTRVLTARAAYMISEANIHPNKMALVTFTAKA 204

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           A EM  R+ E        +  +L      +       +D SK
Sbjct: 205 AQEMRERMTEYPGIEPMFAQSLLIRTFHSLFYTMLVHADPSK 246


>gi|290510697|ref|ZP_06550067.1| DNA helicase IV [Klebsiella sp. 1_1_55]
 gi|289777413|gb|EFD85411.1| DNA helicase IV [Klebsiella sp. 1_1_55]
          Length = 684

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              ++   + ++      S+     +  RS  V A AGSGKT +LV R   LL    A  
Sbjct: 182 LEQYRGFFDGVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAAA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM  R+ E + +    +    S  +  IQ        +SK
Sbjct: 242 EQILLLAFGRQAAQEMDARIRERLASDDITARTFHSLALHIIQQGSKKVPTISK 295


>gi|288936247|ref|YP_003440306.1| UvrD/REP helicase [Klebsiella variicola At-22]
 gi|288890956|gb|ADC59274.1| UvrD/REP helicase [Klebsiella variicola At-22]
          Length = 684

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              ++   + ++      S+     +  RS  V A AGSGKT +LV R   LL    A  
Sbjct: 182 LEQYRGFFDGVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAAA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM  R+ E + +    +    S  +  IQ        +SK
Sbjct: 242 EQILLLAFGRQAAQEMDARIRERLASDDITARTFHSLALHIIQQGSKKVPTISK 295


>gi|295836626|ref|ZP_06823559.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
 gi|295826114|gb|EDY46535.2| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
          Length = 1174

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++ +         V A  G+GKT  LV+ V   + A A P  LL LT ++ AA  +  R+
Sbjct: 43  QRAVVEHRAGPLLVLAGPGTGKTETLVESVAARIAAGADPERLLVLTFSRKAAVALRDRM 102

Query: 83  LEIITAWS 90
              I   S
Sbjct: 103 ALRIGPAS 110


>gi|315926865|gb|EFV06234.1| ATP-dependent helicase PcrA domain protein [Campylobacter jejuni
          subsp. jejuni DFVF1099]
          Length = 117

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78
            S++   S    +  + A AGSGKT  +  R+  L+     PS   L LT T  AA+ M
Sbjct: 8  NDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKAASVM 67

Query: 79 SHRVLEIITA 88
           HR L  +  
Sbjct: 68 RHRALNFLQG 77


>gi|238789275|ref|ZP_04633062.1| Helicase IV (75 kDa helicase) [Yersinia frederiksenii ATCC 33641]
 gi|238722607|gb|EEQ14260.1| Helicase IV (75 kDa helicase) [Yersinia frederiksenii ATCC 33641]
          Length = 684

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
           Q+  ++++     +S+     +   S  V A AGSGKT +LV R   LL  N   P  +L
Sbjct: 186 QDFFQSVESSPLNESQCRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIIT-------AWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            L   + AA EM+ R+ + +         +  L+ +I+     K       +SD    R 
Sbjct: 246 LLAFGRQAADEMNSRIKQRLAVDDIQAKTFHALALQIIQQGSRKTPVISKLESDSKARRS 305

Query: 120 LLIT 123
           LLI 
Sbjct: 306 LLIQ 309


>gi|310640070|ref|YP_003944828.1| ATP-dependent DNA helicase, uvrd/rep family protein [Paenibacillus
           polymyxa SC2]
 gi|309245020|gb|ADO54587.1| ATP-dependent DNA helicase, UvrD/REP family protein [Paenibacillus
           polymyxa SC2]
          Length = 811

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 36/131 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            I   + +              A AG GKT +L  R   L+ + +   S++L +T T  A
Sbjct: 52  GIHLNRPQIQAVRHGKGPLLTLAGAGCGKTTVLAARAGYLMAMRDVPASSILLVTFTSKA 111

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+                     + G +P  +   +AR                
Sbjct: 112 AAEMKLRI-------------------AGLPGVRPAAARAVQAR---------------- 136

Query: 135 TIHAFCEAIMQ 145
           T H+F  A+++
Sbjct: 137 TFHSFALAMLR 147


>gi|241662649|ref|YP_002981009.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240864676|gb|ACS62337.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 587

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +++   T  +Q + +       VSA AGSGKT  L  R  RL       S +L LT +  
Sbjct: 1   MNIFLPTSEQQAIITTTALRVLVSAVAGSGKTRTLCARAGRLTDDGVPLSDILVLTFSNN 60

Query: 74  AAAEMSHRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           A   +  R+   I+    H     +  + T     KP    +++   L    L T 
Sbjct: 61  AVNVLKERLPARILVKTFHAFALSVVKQATGSVKLKPQMLPLARRAELFSGALCTY 116


>gi|295696392|ref|YP_003589630.1| UvrD/REP helicase [Bacillus tusciae DSM 2912]
 gi|295411994|gb|ADG06486.1| UvrD/REP helicase [Bacillus tusciae DSM 2912]
          Length = 470

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 43/157 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
           T+ +      P R   V A  G+GKT +L  R L L+ +    P+ LL  T T+ AAAE+
Sbjct: 29  TEEQWKAVQSPHRRIAVYAGPGTGKTTVLAARALFLIQVLGMRPADLLVTTFTREAAAEL 88

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   + + S +  E+                                      T+H+
Sbjct: 89  KERLRPWLPSRSLIEMEM-------------------------------------GTLHS 111

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               +++ +  E+       +   E+ ++L+E+A + 
Sbjct: 112 ---RMLRWWVRESGQVP--RLLTPEEQRRLVEKAARR 143


>gi|163846307|ref|YP_001634351.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222524068|ref|YP_002568539.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163667596|gb|ABY33962.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222447947|gb|ACM52213.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 878

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 34/173 (19%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
           +   +   +++          +++A  GSGKT +L+ R L L++        +   T T+
Sbjct: 25  MSGFTPNDAQREAILHVDGPLYLTAGPGSGKTRVLLWRTLNLMVYYGVKAEEIFLATFTE 84

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA ++S  +   +   ++L+ +                                  G+ 
Sbjct: 85  KAARQLSDGLRSYLGLVTNLTGQPYD-----------------------------LAGMY 115

Query: 133 VQTIHAFCEAIM---QQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIM 181
           + T+H+ C+ I+   ++F L+       A+ D+  Q   L E A    +    
Sbjct: 116 IGTVHSLCQRILTDRRRFFLDRQRPRSPALLDDLGQYFHLYERANWEIVTRAA 168


>gi|24371066|dbj|BAC22107.1| RecB [Bacteroides thetaiotaomicron]
          Length = 79

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
               A+AGSGKT  L    ++LL+ N      +L +T T  A AEM  R+L  +     +
Sbjct: 5   LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63

Query: 93  SDEILSAEITKIQGK 107
            D+   A + +I+ +
Sbjct: 64  GDKDSEAYLNRIKEE 78


>gi|227875764|ref|ZP_03993892.1| possible UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|227843706|gb|EEJ53887.1| possible UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
          Length = 569

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
            +  E + L     S++ +A+    +  V A AG+GKT  +  R+   +   A     +L
Sbjct: 64  NDQPEML-LEQLDPSQREVATHQHGALCVLAGAGTGKTRAITYRIAYGVRTGAVAAENIL 122

Query: 67  CLTHTKAAAAEMSHRV 82
            L+ T+ AA EM  R+
Sbjct: 123 ALSFTQKAAGEMRERL 138


>gi|153853340|ref|ZP_01994749.1| hypothetical protein DORLON_00738 [Dorea longicatena DSM 13814]
 gi|149754126|gb|EDM64057.1| hypothetical protein DORLON_00738 [Dorea longicatena DSM 13814]
          Length = 613

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
          +S   ++    +       V A  GSGKT  + +R+  L++ +   P  +L +T TK AA
Sbjct: 1  MSLNHAQTEAVAHNKGPCMVLAGPGSGKTLTIAKRIEYLIMKHKVRPEEILVITFTKYAA 60

Query: 76 AEMSHR 81
           EM +R
Sbjct: 61 WEMKNR 66


>gi|308067346|ref|YP_003868951.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305856625|gb|ADM68413.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 808

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 36/131 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
            I   + +              A AG GKT +L  R   L+ + +   S++L +T T  A
Sbjct: 52  GIHLNRPQIQAVRHGKGPLLTLAGAGCGKTTVLAARAGYLMAMRDVPASSILLVTFTSKA 111

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AAEM  R+                     + G +P  +   +AR                
Sbjct: 112 AAEMKLRI-------------------AGLPGVRPAAARAVQAR---------------- 136

Query: 135 TIHAFCEAIMQ 145
           T H+F  A+++
Sbjct: 137 TFHSFALAMLR 147


>gi|271969569|ref|YP_003343765.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512744|gb|ACZ91022.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 1051

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 62/194 (31%), Gaps = 49/194 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++ + +  +    V A  G+GKT  +V+ V+  +      P  +L LT ++ AA E+  R
Sbjct: 6   QRAVVAHESGPLLVLAGPGTGKTTTIVETVVDRIERRGVDPERVLVLTFSRKAAEELRER 65

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +   +     +                                      T H++  
Sbjct: 66  ITGRMRRTTRTPLAL--------------------------------------TFHSYAY 87

Query: 142 AIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           A++++  + A  +     +    +   L+E   +  L   + D          E L+   
Sbjct: 88  ALLRREAVLAGGVPP--RLLTGPEQ--LLE--VRRLLHGELEDGAPHWPDDMREALKT-- 139

Query: 201 DEDIETLISDIISN 214
                  + D +S 
Sbjct: 140 -RGFAQELRDFLSR 152


>gi|306819037|ref|ZP_07452754.1| excision endonuclease subunit UvrD [Mobiluncus mulieris ATCC 35239]
 gi|304648230|gb|EFM45538.1| excision endonuclease subunit UvrD [Mobiluncus mulieris ATCC 35239]
          Length = 569

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
            +  E + L     S++ +A+    +  V A AG+GKT  +  R+   +   A     +L
Sbjct: 64  NDQPEML-LEQLDPSQREVATHQHGALCVLAGAGTGKTRAITYRIAYGVRTGAVAAENIL 122

Query: 67  CLTHTKAAAAEMSHRV 82
            L+ T+ AA EM  R+
Sbjct: 123 ALSFTQKAAGEMRERL 138


>gi|302343614|ref|YP_003808143.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301640227|gb|ADK85549.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 946

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++           V A  G+GKT +L  R  RL+      S LL +T T+ AA E+  R+
Sbjct: 469 QRRAMDYDGGHLIVRAGPGAGKTRLLTARAARLVAGGGDASRLLLVTFTRKAAEELGQRL 528

Query: 83  --LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
             L +  A +H    +    +T   G++P      +   +L   
Sbjct: 529 ATLGLEAARTHTFHGLGLEILTDHLGRRPAIVADQRREEILSQA 572


>gi|307700285|ref|ZP_07637325.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
 gi|307614496|gb|EFN93725.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
          Length = 555

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
            +  E + L     S++ +A+    +  V A AG+GKT  +  R+   +   A     +L
Sbjct: 50  NDQPEML-LEQLDPSQREVATHQHGALCVLAGAGTGKTRAITYRIAYGVRTGAVAAENIL 108

Query: 67  CLTHTKAAAAEMSHRV 82
            L+ T+ AA EM  R+
Sbjct: 109 ALSFTQKAAGEMRERL 124


>gi|290473827|ref|YP_003466701.1| DNA helicase IV [Xenorhabdus bovienii SS-2004]
 gi|289173134|emb|CBJ79907.1| DNA helicase IV [Xenorhabdus bovienii SS-2004]
          Length = 687

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
              + E  +TI+     +S+     +  +S  V A AGSGKT +L+ R   LLL   A P
Sbjct: 182 LQQYAEFFQTIETTPLNRSQCQAVVNGEKSILVLAGAGSGKTSVLIARAGWLLLRQQALP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA EM+ R+ E + A    +    +  +  IQ        MS+
Sbjct: 242 EQVLLLAFGRQAADEMNKRIQERLGAKEIQAKTFHALALHIIQQGSHTAPKMSE 295


>gi|51598887|ref|YP_073075.1| exodeoxyribonuclease V, beta chain [Borrelia garinii PBi]
 gi|51573458|gb|AAU07483.1| exodeoxyribonuclease V, beta chain [Borrelia garinii PBi]
          Length = 1168

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   V+ L+       + +L LT T  A  EM  R+L+ I   
Sbjct: 11  NTTILIEASAGTGKTHILENLVINLIKTKLYSINEVLVLTFTNKATEEMHTRILKAIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAFLGSKTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|260777686|ref|ZP_05886579.1| DNA helicase IV [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605699|gb|EEX31984.1| DNA helicase IV [Vibrio coralliilyticus ATCC BAA-450]
          Length = 688

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q        +  V A AGSGKT +L  RV  LL ++ A    +L L   + AA EM  
Sbjct: 203 SQQQAVLLNDDNNLVLAGAGSGKTSVLTARVAYLLQSHLAQAEDILMLAFGRDAAEEMKQ 262

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 263 RLENKIGLSAE 273


>gi|222445021|ref|ZP_03607536.1| hypothetical protein METSMIALI_00638 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434586|gb|EEE41751.1| hypothetical protein METSMIALI_00638 [Methanobrevibacter smithii
           DSM 2375]
          Length = 1288

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 37/229 (16%)

Query: 7   FQEHSETIDLIS--QTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHP 62
            +++S+  D +      S+Q  A      A  V A AGSGKT  +  +V  L    +  P
Sbjct: 382 LKDNSDLFDDLDGKSLDSQQREAIVVDEDAVKVIAGAGSGKTFTIQGKVKYLTEKRDVDP 441

Query: 63  STLLCLTHTKAAAAEMSHRVLE--IITAWSHLSDEILSAEITKIQGKKPNKSDMSK--AR 118
           S +L ++ + A+  ++  R+ E   I  +  +  +IL+      Q  +P+ S + +   R
Sbjct: 442 SEILAISFSNASVDDLKERIAEPIDIKTFHKVGKDILTQY---NQYSRPDTSALKRIIKR 498

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
           +L    L+      +       + +++ F    N+        ++  K       +  L 
Sbjct: 499 YLTKKALKNED---IS------KKLIEFFSFYINVPPS-----DDDIK------YEGDLL 538

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
                 +      F  +     ++  ETL ++I+ +   L +  F F Y
Sbjct: 539 DWQEGVD------FSTLKRRFKNKQRETLNNEIVRSYEELYIANFLFIY 581


>gi|295130850|ref|YP_003581513.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes SK137]
 gi|291376294|gb|ADE00149.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes SK137]
 gi|313771948|gb|EFS37914.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL074PA1]
 gi|313809677|gb|EFS47411.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL083PA1]
 gi|313830013|gb|EFS67727.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL007PA1]
 gi|313832983|gb|EFS70697.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL056PA1]
 gi|314972840|gb|EFT16937.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL053PA1]
 gi|314975738|gb|EFT19833.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL045PA1]
 gi|314983664|gb|EFT27756.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL005PA1]
 gi|315095783|gb|EFT67759.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL038PA1]
 gi|327329836|gb|EGE71591.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
           HL096PA2]
 gi|327442644|gb|EGE89298.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL043PA1]
 gi|327443718|gb|EGE90372.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL043PA2]
 gi|328761483|gb|EGF75007.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
           HL099PA1]
          Length = 1078

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII-T 87
           P  +  ++A+AG+GKT  +     + +     H   LL +T  ++AA E+  RV E +  
Sbjct: 14  PQGTVLLAASAGTGKTWTISAVCAKAIATGLVHMENLLLVTFNRSAARELIGRVYERLVN 73

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
               L+     ++       +  ++ +++    + + L+      + T H F   ++ + 
Sbjct: 74  TRLLLAGAREPSDPCDWSLIRCGQAGLTR----VESALDNFDRAVITTTHEFASRMLVEL 129

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            + ++      +        L  E       +  LD +
Sbjct: 130 GVLSDHDPSSVLM--TDLAPLATEVSDDHYLAQYLDCD 165


>gi|153800763|ref|ZP_01955349.1| helicase IV [Vibrio cholerae MZO-3]
 gi|124123738|gb|EAY42481.1| helicase IV [Vibrio cholerae MZO-3]
          Length = 699

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 215 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAE 274

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 275 RLKNKIGLEAE 285


>gi|251788839|ref|YP_003003560.1| DNA helicase IV [Dickeya zeae Ech1591]
 gi|247537460|gb|ACT06081.1| UvrD/REP helicase [Dickeya zeae Ech1591]
          Length = 685

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           +T++      S+     +   +  V A AGSGKT +LV R   LL  A A P  +L L  
Sbjct: 190 DTVESSPLNPSQCRAVVNGENAVLVLAGAGSGKTSVLVARAAWLLHRAEASPEQILLLAF 249

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            + AA EM+ R+ E +      +    +  +  IQ        +S+
Sbjct: 250 GRQAADEMNGRIHERLHTDEVQAKTFHALALHIIQQCSRRAPVVSR 295


>gi|216263506|ref|ZP_03435501.1| exodeoxyribonuclease V, beta subunit [Borrelia afzelii ACA-1]
 gi|215980350|gb|EEC21171.1| exodeoxyribonuclease V, beta subunit [Borrelia afzelii ACA-1]
          Length = 1170

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                + A+AG+GKT+IL   V+ L+       + +L LT TK A  EM  R+L+ I   
Sbjct: 11  NSKILIEASAGTGKTYILENLVINLMKTKLYSINEILVLTFTKKATEEMHARILKAIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYFNSKTNEILKKAYEQSKKLFISTINKFSLHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|111115465|ref|YP_710083.1| exodeoxyribonuclease V, beta chain [Borrelia afzelii PKo]
 gi|110890739|gb|ABH01907.1| exodeoxyribonuclease V, beta chain [Borrelia afzelii PKo]
          Length = 1170

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
                + A+AG+GKT+IL   V+ L+       + +L LT TK A  EM  R+L+ I   
Sbjct: 11  NSKILIEASAGTGKTYILENLVINLMKTKLYSINEILVLTFTKKATEEMHARILKAIE-- 68

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                               N    SK   +L    E    L + TI+ F    +  F +
Sbjct: 69  --------------------NAYFNSKTNEILKKAYEQSKKLFISTINKFSLHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|297580262|ref|ZP_06942189.1| helicase IV [Vibrio cholerae RC385]
 gi|297535908|gb|EFH74742.1| helicase IV [Vibrio cholerae RC385]
          Length = 699

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 215 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAE 274

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 275 RLKNKIGLEAE 285


>gi|215425866|ref|ZP_03423785.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92]
 gi|289749131|ref|ZP_06508509.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92]
 gi|289689718|gb|EFD57147.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92]
          Length = 799

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL-EIITA 88
             +  + A+AG+GK   L   V R L   +A    +L +T  +AA+ E+  RV  +I+ A
Sbjct: 14  GTTTVLEASAGTGKPFALAGLVTRYLAETDATLDEMLLITFNRAASRELRERVRGQIVEA 73

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
              L  +   +        + + ++ ++ R  L   L       + T H FC ++++   
Sbjct: 74  VGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLG 133

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                     +A +  +   ++E+    +  I+ D  
Sbjct: 134 ----------VAGDNAADVELKESLTDLVTEIVDDRY 160


>gi|229526775|ref|ZP_04416179.1| DNA helicase IV [Vibrio cholerae bv. albensis VL426]
 gi|229336933|gb|EEO01951.1| DNA helicase IV [Vibrio cholerae bv. albensis VL426]
          Length = 699

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 215 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAE 274

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 275 RLKNKIGLEAE 285


>gi|322832278|ref|YP_004212305.1| UvrD/REP helicase [Rahnella sp. Y9602]
 gi|321167479|gb|ADW73178.1| UvrD/REP helicase [Rahnella sp. Y9602]
          Length = 684

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 1/109 (0%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           +  +T+++     S+     +   +  V A AGSGKT +LV R   LL    AHP  +L 
Sbjct: 187 DFFDTVEVSPLNDSQCRAVVNGEDAVLVLAGAGSGKTSVLVARAGWLLRRQEAHPEQILL 246

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           L   + AA EM+ R+ E +      +    +  +  IQ        +SK
Sbjct: 247 LAFGRQAADEMNGRIKERLHTEGIKAKTFHALALQIIQEGSKKAPKISK 295


>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
 gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
          Length = 906

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 43/148 (29%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +  + +       V A+ G GKT IL +RV +          +LCLT T  AA  M  RV
Sbjct: 11  QAAVIALQAGYHLVLASPGCGKTQILAERVAQAHAHGVDFGDMLCLTFTNRAARSMQERV 70

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + +   +                                        L +  +H FC  
Sbjct: 71  GQRLQVPA--------------------------------------DDLFIGNVHRFCSR 92

Query: 143 IMQQFPLEAN-ITSHFAIADEEQSKKLI 169
            +     +A  + +  +I D++    ++
Sbjct: 93  FL----FDAGFVPASTSIIDDDDVLSIL 116


>gi|121585589|ref|ZP_01675385.1| helicase IV [Vibrio cholerae 2740-80]
 gi|121725960|ref|ZP_01679260.1| helicase IV [Vibrio cholerae V52]
 gi|147671874|ref|YP_001215495.1| DNA helicase IV [Vibrio cholerae O395]
 gi|153211888|ref|ZP_01947735.1| helicase IV [Vibrio cholerae 1587]
 gi|153818597|ref|ZP_01971264.1| helicase IV [Vibrio cholerae NCTC 8457]
 gi|153820788|ref|ZP_01973455.1| helicase IV [Vibrio cholerae B33]
 gi|153824514|ref|ZP_01977181.1| helicase IV [Vibrio cholerae MZO-2]
 gi|153829185|ref|ZP_01981852.1| helicase IV [Vibrio cholerae 623-39]
 gi|227812284|ref|YP_002812294.1| helicase IV [Vibrio cholerae M66-2]
 gi|229510018|ref|ZP_04399498.1| DNA helicase IV [Vibrio cholerae B33]
 gi|229514169|ref|ZP_04403630.1| DNA helicase IV [Vibrio cholerae TMA 21]
 gi|229516421|ref|ZP_04405868.1| DNA helicase IV [Vibrio cholerae RC9]
 gi|229522282|ref|ZP_04411698.1| DNA helicase IV [Vibrio cholerae TM 11079-80]
 gi|229528406|ref|ZP_04417797.1| DNA helicase IV [Vibrio cholerae 12129(1)]
 gi|229605656|ref|YP_002876360.1| DNA helicase IV [Vibrio cholerae MJ-1236]
 gi|254849875|ref|ZP_05239225.1| helicase IV [Vibrio cholerae MO10]
 gi|255746520|ref|ZP_05420467.1| DNA helicase IV [Vibrio cholera CIRS 101]
 gi|262158892|ref|ZP_06030005.1| DNA helicase IV [Vibrio cholerae INDRE 91/1]
 gi|262168561|ref|ZP_06036257.1| DNA helicase IV [Vibrio cholerae RC27]
 gi|298499514|ref|ZP_07009320.1| helicase IV [Vibrio cholerae MAK 757]
 gi|9658137|gb|AAF96616.1| helicase IV [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550206|gb|EAX60220.1| helicase IV [Vibrio cholerae 2740-80]
 gi|121631725|gb|EAX64093.1| helicase IV [Vibrio cholerae V52]
 gi|124116964|gb|EAY35784.1| helicase IV [Vibrio cholerae 1587]
 gi|126510880|gb|EAZ73474.1| helicase IV [Vibrio cholerae NCTC 8457]
 gi|126521831|gb|EAZ79054.1| helicase IV [Vibrio cholerae B33]
 gi|146314257|gb|ABQ18797.1| helicase IV [Vibrio cholerae O395]
 gi|148875298|gb|EDL73433.1| helicase IV [Vibrio cholerae 623-39]
 gi|149742068|gb|EDM56097.1| helicase IV [Vibrio cholerae MZO-2]
 gi|227011426|gb|ACP07637.1| helicase IV [Vibrio cholerae M66-2]
 gi|227015220|gb|ACP11429.1| helicase IV [Vibrio cholerae O395]
 gi|229334768|gb|EEO00254.1| DNA helicase IV [Vibrio cholerae 12129(1)]
 gi|229340267|gb|EEO05273.1| DNA helicase IV [Vibrio cholerae TM 11079-80]
 gi|229346302|gb|EEO11273.1| DNA helicase IV [Vibrio cholerae RC9]
 gi|229348149|gb|EEO13107.1| DNA helicase IV [Vibrio cholerae TMA 21]
 gi|229352463|gb|EEO17403.1| DNA helicase IV [Vibrio cholerae B33]
 gi|229372142|gb|ACQ62564.1| DNA helicase IV [Vibrio cholerae MJ-1236]
 gi|254845580|gb|EET23994.1| helicase IV [Vibrio cholerae MO10]
 gi|255736274|gb|EET91672.1| DNA helicase IV [Vibrio cholera CIRS 101]
 gi|262023090|gb|EEY41795.1| DNA helicase IV [Vibrio cholerae RC27]
 gi|262029465|gb|EEY48116.1| DNA helicase IV [Vibrio cholerae INDRE 91/1]
 gi|297541495|gb|EFH77546.1| helicase IV [Vibrio cholerae MAK 757]
 gi|327485726|gb|AEA80132.1| DNA helicase IV [Vibrio cholerae LMA3894-4]
          Length = 699

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 215 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAE 274

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 275 RLKNKIGLEAE 285


>gi|254225192|ref|ZP_04918805.1| helicase IV [Vibrio cholerae V51]
 gi|125622291|gb|EAZ50612.1| helicase IV [Vibrio cholerae V51]
          Length = 699

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 215 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAE 274

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 275 RLKNKIGLEAE 285


>gi|161582042|ref|NP_233104.2| DNA helicase IV [Vibrio cholerae O1 biovar eltor str. N16961]
          Length = 687

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAE 262

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 263 RLKNKIGLEAE 273


>gi|254285740|ref|ZP_04960703.1| helicase IV [Vibrio cholerae AM-19226]
 gi|150424237|gb|EDN16175.1| helicase IV [Vibrio cholerae AM-19226]
          Length = 699

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 215 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAE 274

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 275 RLKNKIGLEAE 285


>gi|118566782|gb|ABL01710.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 155

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S+     +   S  V A AGSGKT +LV R   LL    A    +L L   +
Sbjct: 72  IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFGR 131

Query: 73  AAAAEMSHRVLEII 86
            AA EM  R+ E +
Sbjct: 132 KAAEEMDERIRERL 145


>gi|229821378|ref|YP_002882904.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229567291|gb|ACQ81142.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 684

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
           +D +     ++ +AS  T    V A AG+GKT  +  R+   + A A   S +L +T T
Sbjct: 12 LLDALDD--DQRAVASSLTGPLCVLAGAGTGKTRAITYRIAHGVQAGAFEASRVLAVTFT 69

Query: 72 KAAAAEMSHRVLEI 85
            AA EM  R+ ++
Sbjct: 70 ARAAGEMRSRLRDL 83


>gi|296454510|ref|YP_003661653.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183941|gb|ADH00823.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 524

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
            + ++  A+       + A AG+GKT  + +R+       A  P  +L +T +  AAAEM
Sbjct: 12  DERQRTAATTLQGPVRIIAGAGAGKTRTVTRRIAYACATGAWKPERVLAVTFSVKAAAEM 71

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
             R+ + +            A    +     + + + +   +   I E P
Sbjct: 72  RARLGQ-LGVGEGAGRSGSGAGTAGVTAATFHSAALHQLNSVWADICEAP 120


>gi|269977410|ref|ZP_06184382.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|269934326|gb|EEZ90888.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
          Length = 533

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
            +  E + L     S++ +A+    +  V A AG+GKT  +  R+   +   A     +L
Sbjct: 28  NDQPEML-LEQLDPSQREVATHQHGALCVLAGAGTGKTRAITYRIAYGVRTGAVAAENIL 86

Query: 67  CLTHTKAAAAEMSHRV 82
            L+ T+ AA EM  R+
Sbjct: 87  ALSFTQKAAGEMRERL 102


>gi|294787985|ref|ZP_06753229.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
            muelleri ATCC 29453]
 gi|294484278|gb|EFG31961.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
            muelleri ATCC 29453]
          Length = 1602

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 83/216 (38%), Gaps = 55/216 (25%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66
            +   +    +S T+  Q++  D ++   V A  GSGKT +LV ++  L  L +     LL
Sbjct: 1041 ERFQKWFGNLSPTQL-QIIQDDNSKHIVVFAAPGSGKTRVLVHKLASLYQLEDVKHEQLL 1099

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             LT ++AAA E   R+ +++   +   +                                
Sbjct: 1100 MLTFSRAAAYEFKSRLFKLMGNAAAYVE-------------------------------- 1127

Query: 127  TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
                  ++T H++C  ++              + D +QS  +IE+A     +  + +N  
Sbjct: 1128 ------IKTFHSYCFDLLG------------RVGDLKQSDDIIEQAVAKIRSGEVENN-- 1167

Query: 187  ELKKAFYEILEISNDEDIE-TLISDIISNRTALKLI 221
             + K    + E  +   I+  LI  +++    +++I
Sbjct: 1168 RIAKLVLVLDEAQDINAIQFELIKTLMAQNEEMRVI 1203


>gi|261379087|ref|ZP_05983660.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria cinerea ATCC 14685]
 gi|269144466|gb|EEZ70884.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria cinerea ATCC 14685]
          Length = 1736

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 22   SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
             + ++     R+  V A  GSGKT I+V RV  LL + +   S+++ LT T+ AA E+  
Sbjct: 1103 QKAVVTDQSGRNRLVLAGPGSGKTRIIVHRVAYLLRVQHVPASSIIVLTFTRLAALEVKR 1162

Query: 81   RVLEIITAWSHL 92
            R+  ++   +  
Sbjct: 1163 RLHGLVGNLARA 1174


>gi|225351497|ref|ZP_03742520.1| hypothetical protein BIFPSEUDO_03093 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157841|gb|EEG71124.1| hypothetical protein BIFPSEUDO_03093 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 502

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
           E +D + + +     A D      + A AG+GKT  + +R+       A +P + + +T 
Sbjct: 10  EILDGLDEAQRAAATAVD--GPVRIIAGAGAGKTRTVTRRIAYACATKAWNPRSTIAVTF 67

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN 110
           +  AAAEM  R+ ++  A    +    SA + +++   P+
Sbjct: 68  SVKAAAEMRSRLSKLDVAADVKAATFHSAALHQLRQVWPD 107


>gi|224534483|ref|ZP_03675059.1| exodeoxyribonuclease V, beta subunit [Borrelia spielmanii A14S]
 gi|224514160|gb|EEF84478.1| exodeoxyribonuclease V, beta subunit [Borrelia spielmanii A14S]
          Length = 1173

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 23/121 (19%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  + A+AG+GKTHIL   VL L+       + +L LT TK A  EM  R+L+ I   
Sbjct: 11  NSTILIEASAGTGKTHILENLVLNLMKTKLYSINEILVLTFTKKATEEMHARILKAIENA 70

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                     K   +L    E    L + TI+ F    +  F +
Sbjct: 71  YFNL----------------------KTNEILKEAYEQSKKLFISTINKFALHALNNFQI 108

Query: 150 E 150
           E
Sbjct: 109 E 109


>gi|300727000|ref|ZP_07060420.1| putative DNA helicase [Prevotella bryantii B14]
 gi|299775723|gb|EFI72313.1| putative DNA helicase [Prevotella bryantii B14]
          Length = 1563

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 16   LISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
            L  Q  + Q    D   S    V+A  GSGKT +LV ++  LLL  +     LL LT ++
Sbjct: 1039 LFGQLSNRQSEIIDDKLSKYIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSR 1098

Query: 73   AAAAEMSHRVLEIITAWSHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            AAA E   R++ ++   +H  D +   +    + GK+ N  +      L   ++E
Sbjct: 1099 AAATEFKKRLIALVGNAAHFVDIKTFHSYSFDLIGKQGNLDEAKDVVRLAAEMIE 1153


>gi|47459326|ref|YP_016188.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
 gi|47458656|gb|AAT27977.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
          Length = 742

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 39/164 (23%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTH 70
           + ++ ++  +   ++  +   S+ V A+AGSGKT +L +R   L  +       +L +T 
Sbjct: 22  KLLEGLNDIQKS-IVTLNSKTSSKVLASAGSGKTKVLTRRYAYLSSVLGIDYEKILVITL 80

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            + +  EM +R+    +     +                                     
Sbjct: 81  NEHSVDEMKNRISRFFSFDFEKTT------------------------------------ 104

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
             + T + FC  I+++   +  + + F + D    K+++++  +
Sbjct: 105 -NIHTFYTFCGKILREDIDKLGLPNDFILTDNTDKKQVLQQIFR 147


>gi|37525714|ref|NP_929058.1| DNA helicase IV [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785143|emb|CAE14072.1| DNA helicase IV [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 684

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTK 72
           I+     +S+ L   +   S  V A AGSGKT +LV R    LLL  A P  +L L  + 
Sbjct: 192 IEASPLNRSQSLAVINGENSVLVLAGAGSGKTSVLVARAGWLLLLQQAIPEQILLLAFSH 251

Query: 73  AAAAEMSHRVLEIIT 87
            A  EM+ R+   + 
Sbjct: 252 QAVNEMNERIQSRLG 266


>gi|253990217|ref|YP_003041573.1| DNA helicase IV [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253781667|emb|CAQ84830.1| dna helicase iv [Photorhabdus asymbiotica]
          Length = 684

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84
              +   S  V A AGSGKT +LV RV  LLL   A P  +L L     AA EM+ R+  
Sbjct: 204 AIVNGENSVLVLAGAGSGKTSVLVARVGWLLLRQQAIPEQILLLAFDNPAADEMNERLYT 263

Query: 85  IIT-------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +         +  L+  I+     K+      ++D  K R  LI 
Sbjct: 264 RLGVKDVEAKTFYALALHIIQQGSNKVLKISILETDEQKRRDFLIK 309


>gi|291520300|emb|CBK75521.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
           16/4]
          Length = 616

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 18  SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAA 75
           ++   +QL A         V A  GSGKT +LV R+   LL  +  P  +L LT+T AA 
Sbjct: 12  NKLNEQQLEAVKSIDGPVLVLAVPGSGKTTVLVNRLGYMLLTKDIKPENILTLTYTVAAT 71

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-VQ 134
            +M+ R  ++      L++ +    I  I  K          +       +     K + 
Sbjct: 72  KDMAARFRKLFGE--ELAESMEFRTINGICAKVIAYYGKMIGKKAFELCSDDKDIAKVIS 129

Query: 135 TIHAFCEAIMQQFPLEANI 153
            I      +M+ +P E++I
Sbjct: 130 NI---YLQVMRDYPTESDI 145


>gi|238792356|ref|ZP_04635990.1| Helicase IV (75 kDa helicase) [Yersinia intermedia ATCC 29909]
 gi|238728282|gb|EEQ19802.1| Helicase IV (75 kDa helicase) [Yersinia intermedia ATCC 29909]
          Length = 684

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
           Q+  ++++     +S+     +   +  V A AGSGKT +LV R   LL  N   P  +L
Sbjct: 186 QDFFQSVEASPLNESQSRAVVNGEDAVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIIT-------AWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            L   + AA EM+HR+ + +         +  L+ +I+     K       +SD    R 
Sbjct: 246 LLAFGRQAADEMNHRIKQRLAVDDIQAKTFHALALQIIQQGSRKTPIISKLESDSQARRS 305

Query: 120 LLIT 123
           LLI 
Sbjct: 306 LLIK 309


>gi|237713878|ref|ZP_04544359.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409213|ref|ZP_06085757.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647413|ref|ZP_06725001.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC 2a]
 gi|294809804|ref|ZP_06768486.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens SD
            CC 1b]
 gi|229446034|gb|EEO51825.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352960|gb|EEZ02056.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637240|gb|EFF55670.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC 2a]
 gi|294442990|gb|EFG11775.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens SD
            CC 1b]
          Length = 1603

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 57/216 (26%)

Query: 9    EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
            ++ +    +S+T+ E ++  +      V+A  GSGKT +LV ++  LLL  +     LL 
Sbjct: 1042 KYRQLFGELSKTQLE-IVNDNQPGHIVVAAGPGSGKTRLLVHKLASLLLMEDVKHEQLLM 1100

Query: 68   LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            LT ++AAA E   R+ ++I                                         
Sbjct: 1101 LTFSRAAANEFRSRLHDLIG--------------------------------------NA 1122

Query: 128  PGGLKVQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             G ++++T H++C  ++ +Q  +E             +SK +I++A +    S +     
Sbjct: 1123 VGYIEIKTFHSYCFDLLGRQGSIE-------------KSKSVIKDAVEKIRNSEV--EIS 1167

Query: 187  ELKKAFYEILEISNDEDIE-TLISDIISNRTALKLI 221
             + K+   I E  +  + E  LI+ +I    +LK+I
Sbjct: 1168 RITKSVLVIDEAQDMTEDEFALIAALIEKNESLKVI 1203


>gi|323177788|gb|EFZ63372.1| ATP-dependent DNA helicase Rep [Escherichia coli 1180]
          Length = 643

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 43/173 (24%)

Query: 48  LVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
           +  ++  L+         +  +T T  AA EM  RV + +                    
Sbjct: 2   ITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR------------------ 43

Query: 107 KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
                    +AR           GL + T H     I+++      + ++F++ D+    
Sbjct: 44  --------KEAR-----------GLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQL 84

Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLISDIISNRTAL 218
            L++E  +  +     D+   L++    I    ND +      ++    R  +
Sbjct: 85  ALLKELTEGLIE----DDKVLLQQLISTISNWKNDLKTPAQAAAEAKGERDRI 133


>gi|217975036|ref|YP_002359787.1| UvrD/REP helicase [Shewanella baltica OS223]
 gi|217500171|gb|ACK48364.1| UvrD/REP helicase [Shewanella baltica OS223]
          Length = 996

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 66/224 (29%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           F ++ E ++    T+ ++        +  + A AG+GKT ++V R   LL +  A    +
Sbjct: 197 FADYFEHVESNPLTEKQRRACIIDDNNNLLLAGAGTGKTSVMVGRAGYLLKSGQAKADEI 256

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L L + + AA EM  R+   +                                       
Sbjct: 257 LLLAYGRKAADEMDERIKNKLGT------------------------------------- 279

Query: 126 ETPGGLKVQTIHAFCEAIM----QQFPLEANITSHFAIADEEQSKKLI----------EE 171
                +K  T H+    I+    +  P   +++     A+++++K+L           +E
Sbjct: 280 ---EDIKASTFHSLGLKIIADVERAKP---SLSPW---AEDDKTKELWVHNTLETLIEDE 330

Query: 172 AKKSTLASIMLDNNEELKKAFY-----EILEISNDEDIETLISD 210
           A +  L           K  F      E  +  ND DI TL  +
Sbjct: 331 AYRKQLFEYFSRFYYVEKSPFEFDLEGEYFQYLNDNDIRTLKGE 374


>gi|309379197|emb|CBX22154.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1741

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 22   SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
             + ++     R+  V A  GSGKT I+V RV  LL + +   S+++ LT T+ AA E+  
Sbjct: 1103 QKAVVTDQSGRNRLVLAGPGSGKTRIIVHRVAYLLRVQHVPASSIIVLTFTRLAALEVKR 1162

Query: 81   RVLEIITAWSHL 92
            R+  ++   +  
Sbjct: 1163 RLHGLVGNLARA 1174


>gi|269219899|ref|ZP_06163753.1| ATP-dependent DNA helicase II [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210639|gb|EEZ76979.1| ATP-dependent DNA helicase II [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 667

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 12/149 (8%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPST 64
           S  E  E +D       ++ +A+       V A AG+GKT  +  R+     A    P  
Sbjct: 3   SADELLEHLD-----PEQREVATRFGVPLCVRAGAGTGKTRAITYRIAYAARAGILDPRN 57

Query: 65  LLCLTHTKAAAAEMSHRVLEI--ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           ++ LT T  AA E+  R+ ++    A +H        ++    G     +    A + L 
Sbjct: 58  VMALTFTSRAAGELRSRLRDLGVRGASAHTFHAAALRQLGYFWGTAIGGAVPPIAENKLS 117

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            + +  G L + T  +     ++    E 
Sbjct: 118 MVAQAAGQLGMTT-DSVS---LRDMASEI 142


>gi|160877186|ref|YP_001556502.1| UvrD/REP helicase [Shewanella baltica OS195]
 gi|160862708|gb|ABX51242.1| UvrD/REP helicase [Shewanella baltica OS195]
 gi|315269390|gb|ADT96243.1| UvrD/REP helicase [Shewanella baltica OS678]
          Length = 996

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 66/224 (29%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           F ++ E ++    T+ ++        +  + A AG+GKT ++V R   LL +  A    +
Sbjct: 197 FADYFEHVESNPLTEKQRRACIIDDNNNLLLAGAGTGKTSVMVGRAGYLLKSGQAKADEI 256

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L L + + AA EM  R+   +                                       
Sbjct: 257 LLLAYGRKAADEMDERIKNKLGT------------------------------------- 279

Query: 126 ETPGGLKVQTIHAFCEAIM----QQFPLEANITSHFAIADEEQSKKLI----------EE 171
                +K  T H+    I+    +  P   +++     A+++++K+L           +E
Sbjct: 280 ---ENIKASTFHSLGLKIIADVERAKP---SLSPW---AEDDKAKELWVHNTLETLIEDE 330

Query: 172 AKKSTLASIMLDNNEELKKAFY-----EILEISNDEDIETLISD 210
           A +  L           K  F      E  +  ND DI TL  +
Sbjct: 331 AYRKQLFEYFSRFYYVEKSPFEFEVEGEYFQYLNDNDIRTLKGE 374


>gi|311111760|ref|YP_003982982.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310943254|gb|ADP39548.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 648

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-P 62
           H + Q   E I L    + ++ +AS+   +  V A AG+GKT  +  R+   +    + P
Sbjct: 47  HAAPQLSPEDI-LAGLDEDQRRVASELNGAMRVLAGAGTGKTRAITHRIAYGIACGKYVP 105

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
             ++ LT T  AA EM  R+   + A    +    SA + +++   P+ 
Sbjct: 106 QRVMALTFTTRAAEEMRLRLRS-LGAVGVQTRTFHSAALRQLRYFWPSA 153


>gi|148927472|ref|ZP_01810975.1| Superfamily I DNA and RNA helicases-like protein [candidate
           division TM7 genomosp. GTL1]
 gi|147887196|gb|EDK72663.1| Superfamily I DNA and RNA helicases-like protein [candidate
           division TM7 genomosp. GTL1]
          Length = 228

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 44/208 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             +++           V A  G+GKT +L  RV  +L   +A    +LCLT T++ AA M
Sbjct: 13  NAAQKQAVDTIDGPVMVIAGPGTGKTELLSLRVANILQKTDARAQNILCLTFTESGAAAM 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+L+++   ++                                       + + T H 
Sbjct: 73  RKRLLDLMGPEAYH--------------------------------------VAIHTFHG 94

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----LASIMLDNNEELKKAFY 193
           F   I+   P      ++F  ADE  S ++++   +       LA+ M +   +LK    
Sbjct: 95  FGTEIINSNPNYFYHGAYFRPADELASYEVLQGIFEKLPHDNPLATRMNEEYTQLKDTQT 154

Query: 194 EILEISNDEDIETLISDIISNRTALKLI 221
            I E+         +  ++ +  A    
Sbjct: 155 AISELKRSGLTPDELLKLLDHNDAFIEY 182


>gi|313668408|ref|YP_004048692.1| DNA helicase [Neisseria lactamica ST-640]
 gi|313005870|emb|CBN87326.1| putative DNA helicase [Neisseria lactamica 020-06]
          Length = 1741

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 22   SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
             + ++     R+  V A  GSGKT I+V RV  LL + +   S+++ LT T+ AA E+  
Sbjct: 1103 QKAVVTDQSGRNRLVLAGPGSGKTRIIVHRVAYLLRVQHVPASSIIVLTFTRLAALEVKR 1162

Query: 81   RVLEIITAWSHL 92
            R+  ++   +  
Sbjct: 1163 RLHGLVGNLARA 1174


>gi|28900527|ref|NP_800182.1| DNA helicase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365408|ref|ZP_05777945.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus K5030]
 gi|260877474|ref|ZP_05889829.1| DNA helicase IV [Vibrio parahaemolyticus AN-5034]
 gi|260894855|ref|ZP_05903351.1| DNA helicase IV [Vibrio parahaemolyticus Peru-466]
 gi|28808907|dbj|BAC62015.1| helicase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085316|gb|EFO35011.1| DNA helicase IV [Vibrio parahaemolyticus Peru-466]
 gi|308090545|gb|EFO40240.1| DNA helicase IV [Vibrio parahaemolyticus AN-5034]
 gi|308114411|gb|EFO51951.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus K5030]
          Length = 689

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKE 262

Query: 81  RVLEIITAWSH 91
           R+++ +   + 
Sbjct: 263 RLVDKVGLAAE 273


>gi|261212475|ref|ZP_05926760.1| DNA helicase IV [Vibrio sp. RC341]
 gi|260838406|gb|EEX65062.1| DNA helicase IV [Vibrio sp. RC341]
          Length = 687

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ 
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILMVAFARDAAQEMAE 262

Query: 81  RVLEIIT 87
           R+   I 
Sbjct: 263 RLKNKIG 269


>gi|271501509|ref|YP_003334535.1| UvrD/REP helicase [Dickeya dadantii Ech586]
 gi|270345064|gb|ACZ77829.1| UvrD/REP helicase [Dickeya dadantii Ech586]
          Length = 685

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
            T++      S+     +   +  V A AGSGKT +LV R   LL    A P  +L L  
Sbjct: 190 NTVESSPLNPSQCQAVVNGENAVLVLAGAGSGKTSVLVARAAWLLHRGEASPQQILLLAF 249

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            + AA EM+ R+LE +      +    +  +  IQ        +S+
Sbjct: 250 GRQAAEEMNSRILERLHTDDVQAMTFHALALHIIQQCSRKVPVISR 295


>gi|239931038|ref|ZP_04687991.1| putative DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439410|ref|ZP_06578800.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342305|gb|EFE69261.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 634

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST------L 65
           +D    T  ++ +   P      V+A AG+GKTH LV+R L  L  +  P        +
Sbjct: 5  YLDSPPLTDEQRAVVEQPWDARVLVTAGAGAGKTHTLVRR-LDALCGHEDPDEVLEAAEI 63

Query: 66 LCLTHTKAAAAEMSHRVLE 84
          L LT ++AAA E+  R+  
Sbjct: 64 LVLTFSRAAARELRERITR 82


>gi|328470471|gb|EGF41382.1| DNA helicase IV [Vibrio parahaemolyticus 10329]
          Length = 689

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKE 262

Query: 81  RVLEIITAWSH 91
           R+++ +   + 
Sbjct: 263 RLVDKVGLAAE 273


>gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Herminiimonas arsenicoxydans]
 gi|133739093|emb|CAL62142.1| putative DNA helicase II [Herminiimonas arsenicoxydans]
          Length = 588

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 42/160 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
           QL A +      V A  GSGKT  LV ++ R+L  +   P  + C+T+++  A E++ R+
Sbjct: 7   QLAAYNSQGHCVVLAGPGSGKTKTLVLKLARILAEDVEAPRGVACITYSQECARELARRI 66

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +                                       L+    L + T+H FC  
Sbjct: 67  ENL--------------------------------------GLQQAPNLFIGTVHGFCLR 88

Query: 143 -IMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLAS 179
            ++  +   A +   F  ++A +  S +L+++   +    
Sbjct: 89  HLLMPYGRLAGLPISFPLSVATQRVSDRLLKQTGDALFGQ 128


>gi|297562736|ref|YP_003681710.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
          DSM 43111]
 gi|296847184|gb|ADH69204.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
          DSM 43111]
          Length = 708

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
            ++ +   +++   A        + A AG+GKT  +  R+   + +       +L +T 
Sbjct: 5  RVLEGLDPEQTQAARAL--RGPVCILAGAGTGKTRAITHRIAYAVSSGVVAEQQVLAVTF 62

Query: 71 TKAAAAEMSHRVLEI 85
          T  AA EM  R+  +
Sbjct: 63 TARAAGEMRGRLRAL 77


>gi|261350409|ref|ZP_05975826.1| putative topoisomerase DNA-binding C4 zinc finger domain protein
            [Methanobrevibacter smithii DSM 2374]
 gi|288861192|gb|EFC93490.1| putative topoisomerase DNA-binding C4 zinc finger domain protein
            [Methanobrevibacter smithii DSM 2374]
          Length = 2155

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 37/229 (16%)

Query: 7    FQEHSETIDLIS--QTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHP 62
             +++S+  D +      S+Q  A      A  V A AGSGKT  +  +V  L    +  P
Sbjct: 1249 LKDNSDLFDDLDGKSLDSQQREAIVVDEDAVKVIAGAGSGKTFTIQGKVKYLTEKRDVDP 1308

Query: 63   STLLCLTHTKAAAAEMSHRVLE--IITAWSHLSDEILSAEITKIQGKKPNKSDMSK--AR 118
            S +L ++ + A+  ++  R+ E   I  +  +  +IL+      Q  +P+ S + +   R
Sbjct: 1309 SEILAISFSNASVDDLKERIAEPIDIKTFHKVGKDILTQY---NQYSRPDTSALKRIIKR 1365

Query: 119  HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            +L    L+      +       + +++ F    N+        ++  K       +  L 
Sbjct: 1366 YLTKKALKNED---IS------KKLIEFFSFYINVPPS-----DDDIK------YEGDLL 1405

Query: 179  SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
                  +      F  +     ++  ETL ++I+ +   L +  F F Y
Sbjct: 1406 DWQEGVD------FSTLKRRFKNKQRETLNNEIVRSYEELYIANFLFIY 1448


>gi|312140612|ref|YP_004007948.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi
          103S]
 gi|311889951|emb|CBH49268.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi
          103S]
          Length = 730

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             +      P     V A AG+GKT  + +R+  L+         +L +T T  AA EM
Sbjct: 29 DPQQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAGGHVSAGQVLAVTFTARAAGEM 88


>gi|261400653|ref|ZP_05986778.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria lactamica ATCC 23970]
 gi|269209560|gb|EEZ76015.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria lactamica ATCC 23970]
          Length = 1741

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 22   SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
             + ++     R+  V A  GSGKT I+V RV  LL + +   S+++ LT T+ AA E+  
Sbjct: 1103 QKAVVTDQSGRNRLVLAGPGSGKTRIIVHRVAYLLRVQHVPASSIIVLTFTRLAALEVKR 1162

Query: 81   RVLEIITAWSHL 92
            R+  ++   +  
Sbjct: 1163 RLHGLVGNLARA 1174


>gi|153838730|ref|ZP_01991397.1| helicase IV [Vibrio parahaemolyticus AQ3810]
 gi|260901447|ref|ZP_05909842.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus AQ4037]
 gi|149747855|gb|EDM58735.1| helicase IV [Vibrio parahaemolyticus AQ3810]
 gi|308108532|gb|EFO46072.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 689

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKE 262

Query: 81  RVLEIITAWSH 91
           R+++ +   + 
Sbjct: 263 RLVDKVGLAAE 273


>gi|315186907|gb|EFU20665.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 1008

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 44/132 (33%), Gaps = 44/132 (33%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + E +   D   +  V A  G+GKT +LV+RV RL+        +  LT T+ AA E+  
Sbjct: 469 QREVVRVGD--GALCVVAGPGAGKTRVLVERVARLVAEGE--GGITVLTFTRKAAEELKA 524

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+     A                                         G+   T HA+ 
Sbjct: 525 RLQGTCGA----------------------------------------EGVWAGTFHAWA 544

Query: 141 EAIMQQFPLEAN 152
              + +F  EA 
Sbjct: 545 YECLVRFHREAG 556


>gi|260494799|ref|ZP_05814929.1| DNA helicase II [Fusobacterium sp. 3_1_33]
 gi|260197961|gb|EEW95478.1| DNA helicase II [Fusobacterium sp. 3_1_33]
          Length = 919

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 56/205 (27%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +S    +Q  A +       + A  G+GKT  LV+R + +L+        ++  T T  A
Sbjct: 1   MSDLNKKQFEAVETVNGPVVIIAGPGTGKTKTLVERTVNILVNKKVEAKKIMITTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ E +   +   D                                    + + 
Sbjct: 61  AKELELRINERLEELNENID---------------------------------ISDIYLG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+    ++Q+    +N   +F                      +M  + E+    +  
Sbjct: 88  TMHSIWARLIQENITYSNFFDNF---------------------ELMSGDYEQHFFIYSR 126

Query: 195 ILEISNDEDIETLISDIISNRTALK 219
           + E    ED +    ++  N    K
Sbjct: 127 LKEYKKLEDYQKFFDNLSYNENKYK 151


>gi|147921573|ref|YP_684610.1| putative ATP-dependent DNA helicase [uncultured methanogenic
           archaeon RC-I]
 gi|56295579|emb|CAH04821.1| ATP-dependent DNA helicase [uncultured archaeon]
 gi|110620006|emb|CAJ35284.1| putative ATP-dependent DNA helicase [uncultured methanogenic
           archaeon RC-I]
          Length = 1075

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 41/148 (27%)

Query: 19  QTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76
                Q  A    T +  VSA AG+GKT ++  +   L+   +  P  LL LT ++ AAA
Sbjct: 14  PLNDRQKDAVRCDTGAVLVSAGAGTGKTTMITAKAAYLIKEKSLKPERLLMLTFSRDAAA 73

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
            M   + +++      +                                         T 
Sbjct: 74  HMKEEIEKVVPEARDATAN---------------------------------------TF 94

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164
           HAFC  I+     +  I   + + DE+ 
Sbjct: 95  HAFCLDILVAGESDTGIDERYRLLDEKD 122


>gi|298368402|ref|ZP_06979720.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282405|gb|EFI23892.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 1739

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 23   EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
            ++ + +    +  V A  GSGKT ++V R   LL   + +P++++ LT  + AA E+  R
Sbjct: 1103 QKAVVTGKQENRLVLAGPGSGKTRVIVHRTAYLLKAEHVNPASVIILTFNRLAAQEIKRR 1162

Query: 82   VLEIITAWSHL 92
            + E++ + +  
Sbjct: 1163 LFELVGSLAAA 1173


>gi|326771907|ref|ZP_08231192.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
 gi|326638040|gb|EGE38941.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
          Length = 717

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
            + S  ++ +   + E  +A        V A AG+GKT  +  R+   +   A   + +L
Sbjct: 33  LDASRLLEALDPDQRE--VAEHLEGPLCVLAGAGTGKTRAITYRIAHGVATGAYQATQVL 90

Query: 67  CLTHTKAAAAEMSHRVLEI 85
            +T T  AA EM  R+ ++
Sbjct: 91  AVTFTARAAGEMRSRLADL 109


>gi|325675761|ref|ZP_08155445.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
 gi|325553732|gb|EGD23410.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
          Length = 723

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             +      P     V A AG+GKT  + +R+  L+         +L +T T  AA EM
Sbjct: 22 DPQQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAGGHVSAGQVLAVTFTARAAGEM 81


>gi|260577078|ref|ZP_05845057.1| UvrD/REP helicase [Rhodobacter sp. SW2]
 gi|259020748|gb|EEW24065.1| UvrD/REP helicase [Rhodobacter sp. SW2]
          Length = 959

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HP 62
            + +++  +TI+    T  ++L       +  V A AGSGKT ++  +   L+ A    P
Sbjct: 164 LDRWKDFFDTIESKPLTPEQRLSIVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRRP 223

Query: 63  STLLCLTHTKAAAAEMSHRVLEI 85
             +L L   K AAAEMS RV   
Sbjct: 224 EEILLLAFAKNAAAEMSERVEAR 246


>gi|254304120|ref|ZP_04971478.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324312|gb|EDK89562.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 919

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 60/219 (27%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +S    +Q  A +       + A  G+GKT  LV+R + +L+        ++  T T  A
Sbjct: 1   MSNLNKKQFEAVETVNGPVVIIAGPGTGKTKTLVERTVNILVNKEVEAKKIMITTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ E +   +   D                                    + + 
Sbjct: 61  AKELELRINERLEELNKNID---------------------------------ISDIYLG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+    ++Q+    +N   +F                      +M  + E+    +  
Sbjct: 88  TMHSIWTRLIQENITYSNFFDNF---------------------ELMSGDYEQHFFIYSR 126

Query: 195 ILEISNDEDIETLISDIISN----RTALKLIFFFFSYLW 229
           + E    ED +    ++  N    R+  +   F  + + 
Sbjct: 127 LKEYKKLEDYQKFFDNLSYNENKYRSDWQKSSFLRNKIN 165


>gi|237741551|ref|ZP_04572032.1| DNA helicase II [Fusobacterium sp. 4_1_13]
 gi|229429199|gb|EEO39411.1| DNA helicase II [Fusobacterium sp. 4_1_13]
          Length = 919

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
          +S    +Q  A +       + A  G+GKT  LV+R + +++        ++  T T  A
Sbjct: 1  MSDLNKKQFEAVETVNGPVVIIAGPGTGKTKTLVERTVNIIVNKKVEAKKIMITTFTNKA 60

Query: 75 AAEMSHRVLEIITAWSHLSD 94
          A E+  R+ E +   +   D
Sbjct: 61 AKELELRINERLEELNENVD 80


>gi|159039648|ref|YP_001538901.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918483|gb|ABV99910.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 719

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 1  MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
          M+ H++       +D       ++   + P     V A AG+GKT  +  R+    L   
Sbjct: 1  MVSHSASDRVLAGLD-----PEQRAAVTAPAGPVCVLAGAGTGKTRAVTSRIAHRALTGE 55

Query: 61 HPST-LLCLTHTKAAAAEMSHRV 82
            S  LL +T T  AAAE+  R+
Sbjct: 56 ILSRHLLAVTFTARAAAELRSRL 78


>gi|330446369|ref|ZP_08310021.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490560|dbj|GAA04518.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 693

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           ++ +      S++  A        V A AG+GKT +LV R   L+    A P  +L L  
Sbjct: 190 DSFESSPLNDSQREAALINQDHNLVLAGAGTGKTSVLVARAGYLIASQQAVPEDILMLAF 249

Query: 71  TKAAAAEMSHRVLEIITAWSHLS--DEILSAEITKIQGKKPN 110
            + AA EMS R+ E ++    ++    + S  IT+++G+KPN
Sbjct: 250 GRKAAEEMSERMREKVSDRVKVATFHSLGSQIITEVEGEKPN 291


>gi|294791407|ref|ZP_06756564.1| putative ATP-dependent DNA helicase (UvrD/REP) [Scardovia inopinata
           F0304]
 gi|294457878|gb|EFG26232.1| putative ATP-dependent DNA helicase (UvrD/REP) [Scardovia inopinata
           F0304]
          Length = 525

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80
           +++  AS       + A AG+GKT  ++ R+       A  P   L +T +  AA EM  
Sbjct: 46  AQRSAASAVEGPVRIIAGAGAGKTRTIMHRIAYACQTGAWDPERSLAVTFSTKAAQEMQS 105

Query: 81  RVLEIITAWSHLSDEILSAEITKI------QGKKPNKSDMSKARHLLITILETPGG 130
           R+ +++      +    SA + ++        + P       A+ L+   L    G
Sbjct: 106 RL-QVLGVGQVHAATFHSAALQQLRSVWDDLSESPFPQVTDNAKDLVFRALARSTG 160


>gi|109900400|ref|YP_663655.1| superfamily I DNA/RNA helicase-like protein [Pseudoalteromonas
           atlantica T6c]
 gi|109702681|gb|ABG42601.1| Superfamily I DNA and RNA helicases-like protein [Pseudoalteromonas
           atlantica T6c]
          Length = 761

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 19  QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAA 74
               +Q +      RS  V A  G+GKTH L++R++  +           LL L+ T+AA
Sbjct: 155 DKPPQQAVIEARLDRSFLVLAPPGTGKTHTLIERLVYAITKSYREVDAGELLVLSFTRAA 214

Query: 75  AAEMSHRVLEIITAWS 90
             E+  R+ + I   +
Sbjct: 215 VGEVRERISKAIKDGA 230


>gi|319779422|ref|YP_004130335.1| DNA helicase IV [Taylorella equigenitalis MCE9]
 gi|317109446|gb|ADU92192.1| DNA helicase IV [Taylorella equigenitalis MCE9]
          Length = 619

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 10/123 (8%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
           T+++   A+  +++  V A AG+GKT  ++ RV  L +     P  +L L   K AA EM
Sbjct: 11  TQNQYKAATSNSQNILVLAGAGTGKTSTIIGRVSYLAMHLGIPPEQILMLAFGKDAAKEM 70

Query: 79  SHRVL--EIITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             R+   + + +    +   L   I +K++ K P  + +S+ ++L   I        + T
Sbjct: 71  QERLESVDALKSVEVRTFHSLGLNIVSKVEKKMPKLTSLSEDQNLEKYIE------TICT 124

Query: 136 IHA 138
             +
Sbjct: 125 SDS 127


>gi|261880650|ref|ZP_06007077.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332603|gb|EFA43389.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 907

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 41/177 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           + + ++  I  T ++Q +         V A  G GKT IL +R+ R          +LCL
Sbjct: 2   KQNRSMGWIPDT-TQQEIIDINDGCHLVLAPPGCGKTQILAERIRRAHALGVAYEDMLCL 60

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T T  AA  M  R+ E I                                          
Sbjct: 61  TFTNRAARGMRERISENIDD-------------------------------------HAT 83

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           G + V  +H FC   + +  +   + +  AI D++    ++    +      + +N 
Sbjct: 84  GDVFVGNVHRFCSRFLFENAV---VPADSAIIDDDTVMSILAMYLQEDEERALANNQ 137


>gi|283784782|ref|YP_003364647.1| helicase IV [Citrobacter rodentium ICC168]
 gi|282948236|emb|CBG87803.1| helicase IV [Citrobacter rodentium ICC168]
          Length = 684

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 1/114 (0%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
            N + E    ++      ++     +  R+  V A AGSGKT +LV R   LL    A  
Sbjct: 182 LNEYAEFFRQVESSPLNPAQARAVVNGERALLVLAGAGSGKTSVLVARAGWLLARGEAAA 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             +L L   + AA E+  R+ E +   +  +    +  +  I+        +SK
Sbjct: 242 EQILLLAFGRQAAQEIDERIRERLHTDAITARTFHALALHIIRQGSKKAPTVSK 295


>gi|294785831|ref|ZP_06751119.1| DNA helicase II [Fusobacterium sp. 3_1_27]
 gi|294487545|gb|EFG34907.1| DNA helicase II [Fusobacterium sp. 3_1_27]
          Length = 919

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 60/219 (27%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
           +S    +Q  A +       + A  G+GKT  LV+R + +++        ++  T T  A
Sbjct: 1   MSDLNKKQFEAVETVNGPVVIIAGPGTGKTKTLVERTVNIIVNKKVEAKKIMITTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ E +   +   D                                    + + 
Sbjct: 61  AKELELRINERLEELNENVD---------------------------------ISDIYLG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+    ++Q+    +N   +F                      +M  + E+    +  
Sbjct: 88  TMHSIWTRLIQENITYSNFFDNF---------------------ELMSGDYEQHFFIYSR 126

Query: 195 ILEISNDEDIETLISDIISN----RTALKLIFFFFSYLW 229
           + E    ED +    ++  N    R+  +   F  + + 
Sbjct: 127 LKEYKKLEDYQKFFDNLSYNENKYRSDWQKSSFLRNKIN 165


>gi|289422673|ref|ZP_06424513.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
           653-L]
 gi|289156852|gb|EFD05477.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
           653-L]
          Length = 625

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 76/222 (34%), Gaps = 60/222 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           +      ++L          V A  GSGKT ++  R++ ++  +   P+ +L ++ TKA+
Sbjct: 1   MAELNNEQKLAVGHIDGPCMVIAGPGSGKTRVIAHRIINMVKNHSIPPTRILAISFTKAS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + EM  R                                      L +   +    +   
Sbjct: 61  SLEMKSR-------------------------------------TLDMGQDDRLKKVNFA 83

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T H+    I++++             D    + L+ E  +  LA  +L          + 
Sbjct: 84  TFHSAFFRILRRY-------------DGVNLEDLLSEVDRFKLAKSILK---------FL 121

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
            ++  +D+D+  ++ +I   +  L     + S  +  ++ +K
Sbjct: 122 KVKDFSDDDVLDVLGEISYVKNDLIDYRDYESSTFESEVFQK 163


>gi|284992611|ref|YP_003411165.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065856|gb|ADB76794.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 674

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
          ++Q   EQL A+   +    + A AG+GKT  +  R+   +   A  P  +L +T T  A
Sbjct: 20 LAQLDDEQLTAAQAVSGPVCILAGAGTGKTRTITHRIAYGVHTGAFVPEQVLAVTFTARA 79

Query: 75 AAEMSHRV 82
          A E+  R+
Sbjct: 80 AGELRSRL 87


>gi|296329387|ref|ZP_06871887.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153507|gb|EFG94325.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 919

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 60/219 (27%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
           +S    +Q  A +       + A  G+GKT  LV+R +  L+        ++  T T  A
Sbjct: 1   MSNLNKKQFEAVETVNGPVVIIAGPGTGKTKTLVERTVNILINKEVEAKKIMITTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ E +   +   D                                    + + 
Sbjct: 61  AKELELRINERLEELNKNID---------------------------------ISDIYLG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+    ++Q+    +N   +F                      +M  + E+    +  
Sbjct: 88  TMHSIWTRLIQENITYSNFFDNF---------------------ELMSGDYEQHFFIYSR 126

Query: 195 ILEISNDEDIETLISDIISN----RTALKLIFFFFSYLW 229
           + E    ED +    ++  N    R+  +   F  + + 
Sbjct: 127 LKEYKKLEDYQKFFDNLSYNENKYRSDWQKSSFLRNKIN 165


>gi|326791279|ref|YP_004309100.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326542043|gb|ADZ83902.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 681

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 61/184 (33%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +   KS++   +   +   V A  GSGKTH+++ RV  ++   N  P  +L +T +K AA
Sbjct: 1   MDLNKSQKQAVTCLLKPTLVIAGPGSGKTHVIINRVHYMIEQLNCAPQHILVVTFSKLAA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM  R                                           +    G+   T
Sbjct: 61  EEMKQR----------------------------------------YEKIHGVTGVTFGT 80

Query: 136 IHAFCEAIM-----QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +H+    I+     +++ +E                 L+E+ KKS L +++ +   + ++
Sbjct: 81  LHSVFYRILRRSDPRRYAIE---------------HLLLEDKKKSILQNLIKELELDEEE 125

Query: 191 AFYE 194
            F E
Sbjct: 126 DFIE 129


>gi|291456383|ref|ZP_06595773.1| putative DNA helicase II [Bifidobacterium breve DSM 20213]
 gi|291381660|gb|EFE89178.1| putative DNA helicase II [Bifidobacterium breve DSM 20213]
          Length = 518

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           + ++  A+       + A AG+GKT  + +R+       A  P   L +T +  AAAEM
Sbjct: 15 DEQQRRAATTLNGPVRIIAGAGAGKTRTVTRRIAYACATGAWKPERALAVTFSVKAAAEM 74

Query: 79 SHRVLEI 85
            R+ ++
Sbjct: 75 RARLEQL 81


>gi|296314120|ref|ZP_06864061.1| ATP-dependent DNA helicase, UvrD/REP family [Neisseria polysaccharea
            ATCC 43768]
 gi|296839271|gb|EFH23209.1| ATP-dependent DNA helicase, UvrD/REP family [Neisseria polysaccharea
            ATCC 43768]
          Length = 1277

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 22   SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
             + ++     R+  V A  GSGKT I+V RV  LL + +   S+++ LT T+ AA E+  
Sbjct: 1103 QKAVVTDQSGRNRLVLAGPGSGKTRIIVHRVAYLLRVQHVPASSIIVLTFTRLAALEVKR 1162

Query: 81   RVLEIITAWSHL 92
            R+  ++   +  
Sbjct: 1163 RLHGLVGNLARA 1174


>gi|256026773|ref|ZP_05440607.1| DNA helicase II [Fusobacterium sp. D11]
 gi|289764769|ref|ZP_06524147.1| DNA helicase II [Fusobacterium sp. D11]
 gi|289716324|gb|EFD80336.1| DNA helicase II [Fusobacterium sp. D11]
          Length = 919

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
          +S    +Q  A +       + A  G+GKT  LV+R + +L+        ++  T T  A
Sbjct: 1  MSDLNKKQFEAVETVNGPVVIIAGPGTGKTKTLVERTVNILVNKKVEAKKIMITTFTNKA 60

Query: 75 AAEMSHRVLEIITAWSHLSD 94
          A E+  R+ E +   +   D
Sbjct: 61 AKELELRINERLEELNENID 80


>gi|145596251|ref|YP_001160548.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305588|gb|ABP56170.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 719

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 1  MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLAN 59
          M+ H++       +D       ++   + P     V A AG+GKT  +  R+  R L   
Sbjct: 1  MVSHSASDRVLAGLD-----PEQRAAVTAPAGPVCVLAGAGTGKTRAVTSRIAHRTLTGE 55

Query: 60 AHPSTLLCLTHTKAAAAEMSHRV 82
               LL +T T  AAAE+  R+
Sbjct: 56 ILARHLLAVTFTARAAAELRSRL 78


>gi|19703859|ref|NP_603421.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714017|gb|AAL94720.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 919

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 60/219 (27%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
           +S    +Q  A +       + A  G+GKT  LV+R +  L+        ++  T T  A
Sbjct: 1   MSNLNKKQFEAVETVNGPVVIIAGPGTGKTKTLVERTVNILINKEVEAKKIMITTFTNKA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R+ E +   +   D                                    + + 
Sbjct: 61  AKELELRINERLEELNKNID---------------------------------ISDIYLG 87

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T+H+    ++Q+    +N   +F                      +M  + E+    +  
Sbjct: 88  TMHSIWTRLIQENITYSNFFDNF---------------------ELMSGDYEQHFFIYSR 126

Query: 195 ILEISNDEDIETLISDIISN----RTALKLIFFFFSYLW 229
           + E    ED +    ++  N    R+  +   F  + + 
Sbjct: 127 LKEYKKLEDYQKFFDNLSYNENKYRSDWQKSSFLRNKIN 165


>gi|89070230|ref|ZP_01157554.1| helicase IV [Oceanicola granulosus HTCC2516]
 gi|89044150|gb|EAR50308.1| helicase IV [Oceanicola granulosus HTCC2516]
          Length = 919

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
           +T++ +  T  ++L       +  V A AGSGKT ++  +   L+ A    PS LL L  
Sbjct: 133 DTVESMPLTPEQRLAVVIDEDATLVLAGAGSGKTSVITAKAAYLVKAGIREPSELLLLAF 192

Query: 71  TKAAAAEMSHRVLEI--ITAWSHLSDEILSAEITKIQGKKP--------NKSDMSKARHL 120
            K AA EMS R      +   +     +    I +++G+KP        +K+ +S  + +
Sbjct: 193 AKDAATEMSERFEAKCGVAVAARTFHALAYEIIGEVEGEKPPLAPTATDDKAFLSLVKEI 252

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLE 150
           L  I+ T   +  QT+  +      +FP E
Sbjct: 253 LRHIVATASEVA-QTVIGWFAGFFDEFPTE 281


>gi|154502276|ref|ZP_02039336.1| hypothetical protein RUMGNA_00086 [Ruminococcus gnavus ATCC 29149]
 gi|153797155|gb|EDN79575.1| hypothetical protein RUMGNA_00086 [Ruminococcus gnavus ATCC 29149]
          Length = 625

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 42/129 (32%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++  K ++   +    +  V A AGSGKT +L  R+ +++   N  PS++L +T +K A 
Sbjct: 1   MNFNKQQEETINTIEGNVAVIATAGSGKTTVLTHRIKKMVEEHNILPSSILAITFSKKA- 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                 + E +                                            + V+T
Sbjct: 60  ---KENINEKLMEL-------------------------------------NISNVSVET 79

Query: 136 IHAFCEAIM 144
            H+F   I+
Sbjct: 80  FHSFALKII 88


>gi|126176131|ref|YP_001052280.1| UvrD/REP helicase [Shewanella baltica OS155]
 gi|125999336|gb|ABN63411.1| UvrD/REP helicase [Shewanella baltica OS155]
          Length = 1004

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 66/224 (29%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           F ++ E ++    T+ ++        +  + A AG+GKT ++V R   LL +  A    +
Sbjct: 197 FADYFEHVESNPLTEKQRRACIIDDNNNLLLAGAGTGKTSVMVGRAGYLLKSGQAKADDI 256

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L L + + AA EM  R+   +                                       
Sbjct: 257 LLLAYGRKAADEMDERIKNKLGT------------------------------------- 279

Query: 126 ETPGGLKVQTIHAFCEAIM----QQFPLEANITSHFAIADEEQSKKLI----------EE 171
                +K  T H+    I+    +  P   +++     A+++++K+L           +E
Sbjct: 280 ---EDIKASTFHSLGLKIIADVERAKP---SLSPW---AEDDKAKELWVHHTLETLIEDE 330

Query: 172 AKKSTLASIMLDNNEELKKAFY-----EILEISNDEDIETLISD 210
           A +  L           K  F      E  +  ND DI TL  +
Sbjct: 331 AYRKQLFEYFSRFYYVEKSPFEFEVEGEYFQYLNDNDIRTLKGE 374


>gi|153833304|ref|ZP_01985971.1| helicase IV [Vibrio harveyi HY01]
 gi|148870440|gb|EDL69361.1| helicase IV [Vibrio harveyi HY01]
          Length = 689

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQHAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKE 262

Query: 81  RVLEIITAWSH 91
           R+++ +   + 
Sbjct: 263 RLVDKVGLAAE 273


>gi|163801629|ref|ZP_02195527.1| helicase IV [Vibrio sp. AND4]
 gi|159174546|gb|EDP59348.1| helicase IV [Vibrio sp. AND4]
          Length = 689

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQHAVLINDDHNLVLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKE 262

Query: 81  RVLEIITAWSH 91
           R+++ +   + 
Sbjct: 263 RLIDKVGLAAE 273


>gi|56419918|ref|YP_147236.1| hypothetical protein GK1383 [Geobacillus kaustophilus HTA426]
 gi|56379760|dbj|BAD75668.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 807

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 71/180 (39%), Gaps = 39/180 (21%)

Query: 9   EHSETIDLISQTK-----SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL--LLANAH 61
             S+ +D + Q         +L  +       V A AG+GKT  ++ R++ L  +  +  
Sbjct: 85  NDSQLLDYLDQNSAFNKGQYELEHAYSRGHYIVKAGAGTGKTTTMINRIMFLKHMQGDLD 144

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
             +++ +T T  AA+ M  ++LE I  +  L+ +                          
Sbjct: 145 LRSVVMITFTNEAASNMRSKLLEKIKNYYDLTKD-----------------------KKY 181

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE-----EQSKKLIEEAKKST 176
           +  +E  G + + TIH+F     ++F +    T  F+ + E      + ++LIE+     
Sbjct: 182 LEWMEEAGRMFIGTIHSFA----REFLVTEGQTLGFSRSMEVRSYKHERRRLIEKYIDQF 237


>gi|154488989|ref|ZP_02029838.1| hypothetical protein BIFADO_02299 [Bifidobacterium adolescentis
           L2-32]
 gi|154083126|gb|EDN82171.1| hypothetical protein BIFADO_02299 [Bifidobacterium adolescentis
           L2-32]
          Length = 502

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           M + ++  E    +D +    ++++ A+       + A AG+GKT  + +R+       A
Sbjct: 1   MEHMDATAEA--ILDGLDD--AQRMAATAVRGPVRIIAGAGAGKTRTVTRRIAYACATKA 56

Query: 61  -HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN 110
             P   L +T +  AAAEM +R+ ++  A    +    SA + +++   P+
Sbjct: 57  WDPRATLAVTFSVKAAAEMRNRLSQLDVASDVKAATFHSAALHQLRRIWPD 107


>gi|110679728|ref|YP_682735.1| helicase IV [Roseobacter denitrificans OCh 114]
 gi|109455844|gb|ABG32049.1| helicase IV [Roseobacter denitrificans OCh 114]
          Length = 916

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HP 62
            + + E  +T++ +  T  ++L       +  V A AGSGKT ++  +   L+ A    P
Sbjct: 131 LDRWTEFLDTVESMPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRSP 190

Query: 63  STLLCLTHTKAAAAEMSHRVLEI--ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             LL L   + AA EMS R+     +   +     +    I  ++G+KP  +  +     
Sbjct: 191 EELLLLAFARDAATEMSERIEARCGVPIAARTFHALAYEIIGDVEGEKPALAPTATDDKA 250

Query: 121 LITILET 127
            ++++  
Sbjct: 251 FLSLIRD 257


>gi|291460937|ref|ZP_06600244.1| DNA helicase II [Fusobacterium periodonticum ATCC 33693]
 gi|291379948|gb|EFE87466.1| DNA helicase II [Fusobacterium periodonticum ATCC 33693]
          Length = 221

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 35/145 (24%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAA 75
           S+    QL A +       + A  G+GKT  LV+R +  L+        ++  T T  A 
Sbjct: 9   SELNERQLEAVNTVKGPVVIIAGPGTGKTKTLVERTVNILINEKVEAKKIMITTFTNKAT 68

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+ E +   +   D                                    + + T
Sbjct: 69  RELELRINESLENSNQSID---------------------------------ISDMYIGT 95

Query: 136 IHAFCEAIMQQFPLEANITSHFAIA 160
           +H+    ++++  + +    +F + 
Sbjct: 96  MHSIWTRLIEENIIYSKFFDNFELM 120


>gi|305665029|ref|YP_003861316.1| helicase IV [Maribacter sp. HTCC2170]
 gi|88709781|gb|EAR02013.1| helicase IV [Maribacter sp. HTCC2170]
          Length = 1024

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 5   NSFQEHSETI---DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NA 60
           N  ++ ++ +   +  S  K ++        +  + A AGSGKT  +  +V  L      
Sbjct: 130 NELEKANDLLSDVEGHSLDKQQRNAIIVNEDNNLIIAGAGSGKTTTIAGKVKYLTQRLKV 189

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEII 86
            P ++L ++ T+ +A EM+ R+ + +
Sbjct: 190 KPESILLISFTRKSADEMAERIQKKM 215


>gi|269961143|ref|ZP_06175511.1| helicase IV [Vibrio harveyi 1DA3]
 gi|269834094|gb|EEZ88185.1| helicase IV [Vibrio harveyi 1DA3]
          Length = 689

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQHAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKE 262

Query: 81  RVLEIITAWSH 91
           R+++ +   + 
Sbjct: 263 RLVDKVGLAAE 273


>gi|209695575|ref|YP_002263504.1| DNA helicase IV [Aliivibrio salmonicida LFI1238]
 gi|208009527|emb|CAQ79819.1| helicase IV [Aliivibrio salmonicida LFI1238]
          Length = 687

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            +S+Q           V A AGSGKT +LV RV  L+ +  A P  +L L   + AA EM
Sbjct: 198 NESQQSALLLNEDHTLVLAGAGSGKTSVLVARVNYLIKSQVAQPEEILLLAFGRQAAQEM 257

Query: 79  SHRVLEIITA 88
           S R++E +  
Sbjct: 258 SARIIEKLGT 267


>gi|300741869|ref|ZP_07071890.1| putative ATP-dependent DNA helicase (UvrD/REP) [Rothia dentocariosa
           M567]
 gi|300381054|gb|EFJ77616.1| putative ATP-dependent DNA helicase (UvrD/REP) [Rothia dentocariosa
           M567]
          Length = 648

 Score = 75.3 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           L    + ++ +AS+   +  V A AG+GKT  +  R+   +    + P  ++ LT T  A
Sbjct: 58  LAGLDEDQRRVASELNGAMRVLAGAGTGKTRAITHRIAYGIACGKYVPQRVMALTFTTRA 117

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           A EM  R+   + A    +    SA + +++   P+ 
Sbjct: 118 AEEMRLRLRS-LGAVGVQTRTFHSAALRQLRYFWPSA 153


>gi|262374048|ref|ZP_06067325.1| exodeoxyribonuclease V, beta subunit [Acinetobacter junii SH205]
 gi|262311059|gb|EEY92146.1| exodeoxyribonuclease V, beta subunit [Acinetobacter junii SH205]
          Length = 1239

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 15/179 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AG+GKT+ L   ++R+ L    P  ++  T T+AAAAE+  R+   +       +
Sbjct: 22  LIEASAGTGKTYTLSSLMVRIFLEKYLPHQVIATTFTRAAAAELKTRIRARLVEVQQFLE 81

Query: 95  EILSAEITKIQGKKPNKSDMSKARHL-------------LITILETPGGLKVQTIHAFCE 141
              +     I      ++D  K   L             L  +++    L V T+ +F +
Sbjct: 82  PFRNVLEADIYQFALQENDPLKQHILQTFAPRIAYACERLKLVIDQLDELFVGTLDSFSQ 141

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            ++++F  E+       I   E +K    +     L   +    + L    Y +  + N
Sbjct: 142 KLLREFAFESGKIERAQIT--EDAKAYTRQLIHDVLREWIQAQPQPLIDTLYMVGGLKN 198


>gi|297192221|ref|ZP_06909619.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151257|gb|EDY64039.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 1190

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 22/152 (14%)

Query: 48  LVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
           +  RV+ L+      P  +L LT T  AA E++ RV   +        + +         
Sbjct: 1   MAARVVWLVGTGQVAPDQVLGLTFTNKAAGELAERVRTALVRAGVTDPDAIDPGDPSSAF 60

Query: 107 KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166
                                 G  ++ T HAF   +++   L   +     +  +    
Sbjct: 61  GGDTPV----------------GEPRISTYHAFAGQLLKDHGLRIGLEPTARLLADATRY 104

Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           +L     +             L ++F  ++  
Sbjct: 105 QLAARVLRE-----APGPYPALTRSFPSLVSD 131


>gi|256821294|ref|YP_003145257.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
 gi|256794833|gb|ACV25489.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
          Length = 610

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 43/152 (28%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
           D    T+    +  +   +  + A  G+GKT IL QR   LL       P  +L LT   
Sbjct: 14  DGFISTEVANEVIKEKNNNLAILAGPGAGKTEILAQRANYLLQTGLCKSPQKILALTFKV 73

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA+ + +R+                              D+   R L            
Sbjct: 74  DAASNIKNRI------------------------------DLRCGRELASRFES------ 97

Query: 133 VQTIHAFCEAIMQQFPLE----ANITSHFAIA 160
             T  AF  +++++F        +I S F + 
Sbjct: 98  -STFDAFFISLVRRFSTLLPSWIDIPSDFDVY 128


>gi|160947350|ref|ZP_02094517.1| hypothetical protein PEPMIC_01284 [Parvimonas micra ATCC 33270]
 gi|158446484|gb|EDP23479.1| hypothetical protein PEPMIC_01284 [Parvimonas micra ATCC 33270]
          Length = 615

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 45/217 (20%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +  T  +          A + A  GSGKT +L+ R+L L+   N  PS ++ +T +K+  
Sbjct: 1   MKFTSQQVDAIKHFEGPALILAVPGSGKTTVLLNRILNLIKNHNIDPSEIISITFSKSQG 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R                                       L    E  G +  +T
Sbjct: 61  IDMEKR--------------------------------------FLAQNPEFRGKITFKT 82

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IHAFC  I++ +    NI       + E ++ LI   K+          ++E    F+ I
Sbjct: 83  IHAFCYEIVRNYMKLKNIKKTLIEGNNEFNRILI--LKRVYYQKNYKKPSDEEINDFFSI 140

Query: 196 LEISNDE--DIETLIS--DIISNRTALKLIFFFFSYL 228
            + + ++  D E  I     ISNR+ +  ++  +  +
Sbjct: 141 YDYTKNKMYDFEGYIRKNHFISNRSLMLKLYNLYDEI 177


>gi|91227913|ref|ZP_01262052.1| helicase IV [Vibrio alginolyticus 12G01]
 gi|91188322|gb|EAS74619.1| helicase IV [Vibrio alginolyticus 12G01]
          Length = 689

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAATEMKE 262

Query: 81  RVLEIITAWS 90
           R+++ +   +
Sbjct: 263 RLVDKVGMAA 272


>gi|262370059|ref|ZP_06063386.1| exonuclease subunit V [Acinetobacter johnsonii SH046]
 gi|262315098|gb|EEY96138.1| exonuclease subunit V [Acinetobacter johnsonii SH046]
          Length = 1250

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           W+ A+AG+GKT  L   ++R+ L    P+ ++  T T+AAAAE+  RV   +       +
Sbjct: 27  WIEASAGTGKTFTLSSLMVRIFLGAYLPNQVIATTFTRAAAAELKSRVRARLIETLRYFE 86

Query: 95  EILSAEITKIQGKKPNKSD-------------MSKARHLLITILETPGGLKVQTIHAFCE 141
              S    +IQ K   + D             +  A+  L  +++    L V T+ +F +
Sbjct: 87  GCQSLTEREIQAKIAAEQDPLFTKVLTDYAQRVGFAQERLKLVIDQLDELFVGTLDSFSQ 146

Query: 142 AIMQQFPLEANITSHFAIADEEQS--KKLIEEAKKSTLAS 179
            ++++F  E+       I D+ QS  ++LI +  +  + +
Sbjct: 147 KLLREFSFESGKIERADITDDAQSYTQQLIHDVLREWIQA 186


>gi|227498173|ref|ZP_03928344.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces urogenitalis
          DSM 15434]
 gi|226832423|gb|EEH64806.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces urogenitalis
          DSM 15434]
          Length = 673

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
             ++ +A        V A AG+GKT  +  R+       A  PS +L +T T+ AA EM
Sbjct: 2  DPDQREVAEHLEGPMCVLAGAGTGKTRAITYRIAYGAGVGAYQPSQVLAVTFTQRAAGEM 61

Query: 79 SHRVLEI 85
            R+ ++
Sbjct: 62 RSRLADL 68


>gi|304412485|ref|ZP_07394091.1| UvrD/REP helicase [Shewanella baltica OS183]
 gi|307307144|ref|ZP_07586882.1| UvrD/REP helicase [Shewanella baltica BA175]
 gi|304349127|gb|EFM13539.1| UvrD/REP helicase [Shewanella baltica OS183]
 gi|306910383|gb|EFN40814.1| UvrD/REP helicase [Shewanella baltica BA175]
          Length = 1004

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 75/224 (33%), Gaps = 66/224 (29%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           F ++ E ++    TK ++        +  + A AG+GKT ++V R   LL +  A    +
Sbjct: 197 FADYFEHVESNPLTKKQRRACIIDDNNNLLLAGAGTGKTSVMVGRAGYLLKSGQAKADDI 256

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L L + + AA EM  R+   +                                       
Sbjct: 257 LLLAYGRKAADEMDERIKNKLGT------------------------------------- 279

Query: 126 ETPGGLKVQTIHAFCEAIM----QQFPLEANITSHFAIADEEQSKKLI----------EE 171
                +K  T H+    I+    +  P   +++     A+++++K+L            E
Sbjct: 280 ---EDIKASTFHSLGLKIIADVERAKP---SLSPW---AEDDKAKELWVHNTLETLIENE 330

Query: 172 AKKSTLASIMLDNNEELKKAFY-----EILEISNDEDIETLISD 210
           A +  L           K  F      E  +  ND DI TL  +
Sbjct: 331 AYRKQLFEYFSRFYYVEKSPFEFEVEGEYFQYLNDNDIRTLKGE 374


>gi|238754346|ref|ZP_04615702.1| Helicase IV (75 kDa helicase) [Yersinia ruckeri ATCC 29473]
 gi|238707379|gb|EEP99740.1| Helicase IV (75 kDa helicase) [Yersinia ruckeri ATCC 29473]
          Length = 686

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           E  + ++      S+     +   S  V A AGSGKT +LV R   LL    A P  +L 
Sbjct: 189 EFFQQVETSPLNDSQCRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRQEAQPDQILL 248

Query: 68  LTHTKAAAAEMSHRVLEIIT-------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           L   + AA EM+ R+ + +         +  L+ +I+     K+      +SD    R L
Sbjct: 249 LAFGRQAADEMNARIKQQLGVDGIQAKTFHALALQIIQQGSRKVPVISKLESDSEARRTL 308

Query: 121 LIT 123
           LI 
Sbjct: 309 LIK 311


>gi|289582057|ref|YP_003480523.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
 gi|289531610|gb|ADD05961.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
          Length = 1194

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 38/155 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +  +      +  V A AGSGKT  +V+R+   +   +  P+ LL LT    AA  +  +
Sbjct: 41  QPAVIDATGGAHTVEAVAGSGKTTTMVKRLQAEIEERDVSPNRLLVLTFANEAAHTIQEK 100

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + E +                                            + V T H+F  
Sbjct: 101 LREALGPQVAFD-------------------------------------IDVYTYHSFSS 123

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            ++ ++     ++  F +  EE   +LIE      
Sbjct: 124 KLLTEYAYHVGVSPEFDLVTEEDRPQLIESVYGDV 158


>gi|254229814|ref|ZP_04923220.1| helicase IV [Vibrio sp. Ex25]
 gi|262395620|ref|YP_003287473.1| DNA helicase IV [Vibrio sp. Ex25]
 gi|151937650|gb|EDN56502.1| helicase IV [Vibrio sp. Ex25]
 gi|262339214|gb|ACY53008.1| DNA helicase IV [Vibrio sp. Ex25]
          Length = 689

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAATEMKE 262

Query: 81  RVLEIITAWS 90
           R+++ +   +
Sbjct: 263 RLVDKVGMAA 272


>gi|302874502|ref|YP_003843135.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307690889|ref|ZP_07633335.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302577359|gb|ADL51371.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 666

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 80/217 (36%), Gaps = 50/217 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K ++        +  + A  G+GKT +++ RV  L+         ++ +T TKAAA  M
Sbjct: 8   DKDQRKAVYCEDGNTLIVAAPGAGKTTVIINRVYHLIKNRGIDYRNIIVITFTKAAAENM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R       +  LSD+          G+ P                         T H 
Sbjct: 68  KQR-------YKKLSDD----------GRVPFF----------------------GTFHG 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I++ +    +I     + + +++  ++++   + +  I  +  +E       +++ 
Sbjct: 89  LFYKILRNY---IDI----KLIETKEAYGIVKKVLVTYMDEISEEKIKETLSTI-SLVKT 140

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           S + +IE ++   I     L+    + +Y   + +++
Sbjct: 141 SRNIEIEAVVK--IDKDIFLRCYESYENYKKSKGLMD 175


>gi|153954093|ref|YP_001394858.1| ATP-dependent DNA helicase [Clostridium kluyveri DSM 555]
 gi|219854706|ref|YP_002471828.1| hypothetical protein CKR_1363 [Clostridium kluyveri NBRC 12016]
 gi|146346974|gb|EDK33510.1| ATP-dependent DNA helicase [Clostridium kluyveri DSM 555]
 gi|219568430|dbj|BAH06414.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 670

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 78/217 (35%), Gaps = 66/217 (30%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73
           +I+     Q+ A +   ++  + A  GSGKT +++ R+  L+   N  P  ++ +T T+A
Sbjct: 1   MINNLDVNQIKAVNTNFKNVVICAPPGSGKTTVIINRINYLITQKNIKPKNIVVITFTRA 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +A +M +R                                        ++I+        
Sbjct: 61  SALDMKYR---------------------------------------YLSIMNKNPLPFF 81

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H+    I++++  E N      + +  ++  LI                        
Sbjct: 82  GTFHSLFYNILKRYKGEIN------MVESSKAYSLI-------------------SSVLM 116

Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
             +    +E ++ +++DI   R++ K + +F S + +
Sbjct: 117 RYIGFVEEEKVKEVLNDISLFRSSSKSMEYFNSKIDK 153


>gi|154253843|ref|YP_001414667.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
 gi|154157793|gb|ABS65010.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
          Length = 604

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 42/160 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82
           QL A +      V A  GSGKT  LV ++ R+L  +   P  + C+T+++  A E+  R+
Sbjct: 23  QLAAYNSQGHCVVLAGPGSGKTKTLVLKLARILAEDVESPRGVACITYSQECARELVRRI 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +                                       L+    L + T+H FC  
Sbjct: 83  ESL--------------------------------------GLQQAPNLFIGTVHGFCLR 104

Query: 143 -IMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLAS 179
            ++  +   A +   F  ++A +  S +L+++   +    
Sbjct: 105 HLLMPYGRLAGLPISFPLSVATQRVSDRLLKQTGDAIFGQ 144


>gi|300779090|ref|ZP_07088948.1| UvrD/REP helicase [Chryseobacterium gleum ATCC 35910]
 gi|300504600|gb|EFK35740.1| UvrD/REP helicase [Chryseobacterium gleum ATCC 35910]
          Length = 591

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 43/156 (27%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAA 75
            +   EQ +A   + +  ++A  GSGKT +++ ++   L  LAN     +  +T T  A+
Sbjct: 4   DKLNDEQRVAVTQSGNVLLTACPGSGKTRVIIHKLAYELDQLANTSKKKIAAVTFTVRAS 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E    + + + A    SD+I S                                    T
Sbjct: 64  EE----IFKRLNAMGINSDKIWS-----------------------------------GT 84

Query: 136 IHAFCE-AIMQQF-PLEANITSHFAIADEEQSKKLI 169
           +H+FC   I++ +      + + F++ADE    +LI
Sbjct: 85  LHSFCLEWILRPYSCYLPELQNGFSMADESYCDELI 120


>gi|212715429|ref|ZP_03323557.1| hypothetical protein BIFCAT_00324 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212661604|gb|EEB22179.1| hypothetical protein BIFCAT_00324 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 584

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19 QTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
              EQ+   +    +  V A AG+GKT  ++  +  LL    A P  +L L+ TKA+A 
Sbjct: 25 DLSDEQISAIAGAGHNTLVLAGAGTGKTTTIIGYIAWLLATKRAAPEEILVLSFTKASAG 84

Query: 77 EMSHRVLEIITA 88
          +MS R++     
Sbjct: 85 DMSQRIMASTGK 96


>gi|301321588|gb|ADK68978.1| Superfamily I DNA and RNA helicase [Gordonia sp. KTR9]
          Length = 1067

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 23  EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMS 79
           +Q  A + T     V A AG+GKT  + +R+ R+L       PS++L L+ T AAA E+ 
Sbjct: 435 QQRAAVETTDPLVMVVAGAGAGKTWTITERI-RMLTLGCSVVPSSILALSFTNAAADEIR 493

Query: 80  HR 81
            R
Sbjct: 494 DR 495


>gi|190894001|ref|YP_001984295.1| probable ATP-dependent DNA helicase protein [Rhizobium etli CIAT
           652]
 gi|190699662|gb|ACE93745.1| probable ATP-dependent DNA helicase protein [Rhizobium etli CIAT
           652]
          Length = 594

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 78/215 (36%), Gaps = 44/215 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           +IS T+ +Q  A +  +   ++A  GSGKT +++ ++L L       P  + C+T+T AA
Sbjct: 1   MISLTEEQQ-SAVEVEKHLLLAACPGSGKTRVILAKLLGLADTVEKSPRFIGCITYTNAA 59

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E+  R+    T  S    +                                     V 
Sbjct: 60  VDEIESRLRVYGTNTSTEKCD-------------------------------------VS 82

Query: 135 TIHAFC-EAIMQQFPLE-ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           TIH+FC + I++ +    A +   F +   E +    E+  ++                +
Sbjct: 83  TIHSFCLQHILRPYSWLVAELPPTFKVLTREIAD--FEQIVEAVEDHFGRATMARTFDDY 140

Query: 193 YEI-LEISNDEDIETLISDIISNRTALKLIFFFFS 226
             + +++  +   +     I++  +A+    F  +
Sbjct: 141 ESLRVDVHGEPAGDGFEHGIVTRDSAILYWEFVRA 175


>gi|225174552|ref|ZP_03728551.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus
            AHT 1]
 gi|225170337|gb|EEG79132.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus
            AHT 1]
          Length = 1609

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 60/217 (27%)

Query: 11   SETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
            S+   L  +    QL      ++    V A  GSGKT +LV ++  L+L  +     LL 
Sbjct: 1038 SKFRQLFGELSPTQLNIIKDNQNKHIAVLAGPGSGKTRVLVHKLASLILMEDVKHEQLLM 1097

Query: 68   LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            LT ++AAA E   R+ ++I   ++  +                                 
Sbjct: 1098 LTFSRAAATEFKKRLTQLIGGAANFIE--------------------------------- 1124

Query: 128  PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                 ++T H++C                F +     + +  ++  K+T+  I     E 
Sbjct: 1125 -----IKTFHSYC----------------FDLMGRVGNAEKFDDVVKATIEKIRNGEVEP 1163

Query: 188  LK--KAFYEILEISN-DEDIETLISDIISNRTALKLI 221
             +  K    + E  + D+D+  L+  +++    +++I
Sbjct: 1164 GRITKTVLVLDEAQDMDQDVFNLVQTLMAQNEDMRVI 1200


>gi|50954632|ref|YP_061920.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951114|gb|AAT88815.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 570

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 16  LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
           L+S    +Q +A++       V A AG+GKT  +  R+   + + A  P+ ++ LT T  
Sbjct: 6   LLSGLDDQQRVAAEALFGPVCVLAGAGTGKTRAITHRIAYGVASGAFTPNRVMALTFTTR 65

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
           +AAE+  R+ + + A    +    SA + ++    P
Sbjct: 66  SAAELRGRLRQ-LGAGGVAARTFHSAALAQLNYFWP 100


>gi|260597363|ref|YP_003209934.1| DNA helicase IV [Cronobacter turicensis z3032]
 gi|260216540|emb|CBA29752.1| Helicase IV [Cronobacter turicensis z3032]
          Length = 684

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 4/128 (3%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           + +    I+      S+     +   S  V A AGSGKT +LV R   L+    A    +
Sbjct: 185 YADFFSHIESSPLNPSQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLIERGEATAEQI 244

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLI 122
           L L   + AA EM  R+L+ +   +  +    +  +  I     K P  SD+        
Sbjct: 245 LLLAFGRQAAREMEERLLKRLHTDAITARTFHALALQIIGQGGRKTPRVSDLENDTTARH 304

Query: 123 TILETPGG 130
            +L     
Sbjct: 305 ELLLNAWR 312


>gi|164687187|ref|ZP_02211215.1| hypothetical protein CLOBAR_00828 [Clostridium bartlettii DSM
           16795]
 gi|164603611|gb|EDQ97076.1| hypothetical protein CLOBAR_00828 [Clostridium bartlettii DSM
           16795]
          Length = 739

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 58/224 (25%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +  V A  G+GKT I+   V +LL  N +    +L LT+  +AA     R+ +I+    
Sbjct: 22  GTMAVPAVPGAGKTFIVTNLVAKLLEENKNEKGKILILTYMNSAANNFKGRIKKILEE-- 79

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                             +E+  G +V TIH+    I+++ P  
Sbjct: 80  --------------------------------KGIESTNGFEVMTIHSLAAKIIKEKPEA 107

Query: 151 ANITSHFAIADEEQSKKLIEE------------AKKSTLAS-----IMLDNNEELKKAFY 193
             ++  F IAD+ Q   ++ +            A +  L             E  +  F+
Sbjct: 108 MMLSEDFNIADDFQKTMMLNDCINTFRASGGETAFRFFLKEQKNQMWYDIQLEAWENGFF 167

Query: 194 EILEIS------NDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
           E++  S      ND   ++L ++ +SN+  LK+I F ++   +R
Sbjct: 168 ELVSKSISNLKYNDISPQSLEANTLSNKGILKIISFIYTEYDKR 211


>gi|187940200|gb|ACD39328.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa]
          Length = 1708

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 22   SEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMS 79
            +++++  D   ++  V A  GSGKT ++V R+  LL     P+  ++ LT  + AA E+ 
Sbjct: 1100 AQRVIVEDNEDQNRLVLAGPGSGKTRVIVHRIAYLLRVRRVPARCIVALTFNRHAANEIK 1159

Query: 80   HRVLEIITAWS 90
             R+L ++ A +
Sbjct: 1160 QRLLRLVGADA 1170


>gi|293396721|ref|ZP_06640997.1| helicase IV [Serratia odorifera DSM 4582]
 gi|291420985|gb|EFE94238.1| helicase IV [Serratia odorifera DSM 4582]
          Length = 684

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 82/223 (36%), Gaps = 31/223 (13%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67
           +  +T++      S+     +   +  V A AGSGKT +LV R   LL    A P  +L 
Sbjct: 187 DFFQTVESSPLNASQSRAVVNGEDAVLVLAGAGSGKTSVLVARAGWLLRRQEAEPGQILL 246

Query: 68  LTHTKAAAAEMSHRVLEIIT-------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           L   + AA EM+ R+ E +         +  L+  I+     K       ++D    R L
Sbjct: 247 LAFGRQAAQEMNQRISERLGNSDIQAKTFHALALHIIQQGSRKAPAISKLETDSKARREL 306

Query: 121 L-----ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           L         E     K      + + ++ +   E      F      Q K+L E     
Sbjct: 307 LVKTWQQQCGEKKAQAK-----GWRQWLIDELAWEVP-DGDF-----WQDKRLAERLAGR 355

Query: 176 TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
               + L       +A  E++E +N+E     + D+ S R  L
Sbjct: 356 LERWLGLMRMHGGSQA--EMIEQANEE-----VRDLFSKRIRL 391


>gi|257896731|ref|ZP_05676384.1| UvrD/REP helicase [Enterococcus faecium Com12]
 gi|257833296|gb|EEV59717.1| UvrD/REP helicase [Enterococcus faecium Com12]
          Length = 728

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 48/222 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           NSF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 61  NSFFKMMEKRSYNRFNQEQKAAITYDMEKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 121 ERILMITFTRNAANELKKRV---------------------------------------D 141

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKST 176
              +    + + T H+        I ++FP  A   I   F+    ++   ++++  +  
Sbjct: 142 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFSKDTAQKVNAVLQQLIRKY 201

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
              +     E+   +  +  +  N   IE +I  +     ++
Sbjct: 202 NLYLFDQYGEKTIASRLDYWQNMNL-SIEEMIQLVKEKYDSI 242


>gi|218675267|ref|ZP_03524936.1| UvrD/REP helicase [Rhizobium etli GR56]
          Length = 89

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 16 LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           + +   +Q +A +               V A AGSGKT+ L  RV  L++  A P  +L
Sbjct: 2  YLEKLNPQQRMAVEHGTLTDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 61

Query: 67 CLTH 70
           +T 
Sbjct: 62 LMTF 65


>gi|227551107|ref|ZP_03981156.1| UvrD Rep family helicase [Enterococcus faecium TX1330]
 gi|293378647|ref|ZP_06624807.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
 gi|227179768|gb|EEI60740.1| UvrD Rep family helicase [Enterococcus faecium TX1330]
 gi|292642778|gb|EFF60928.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
          Length = 744

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 48/222 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           NSF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 77  NSFFKMMEKRSYNRFNQEQKAAITYDMEKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 136

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 137 ERILMITFTRNAANELKKRV---------------------------------------D 157

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKST 176
              +    + + T H+        I ++FP  A   I   F+    ++   ++++  +  
Sbjct: 158 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFSKDTAQKVNAVLQQLIRKY 217

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
              +     E+   +  +  +  N   IE +I  +     ++
Sbjct: 218 NLYLFDQYGEKTIASRLDYWQNMNL-SIEEMIQLVKEKYDSI 258


>gi|257888982|ref|ZP_05668635.1| ATP-dependent DNA helicase UvrD [Enterococcus faecium 1,141,733]
 gi|257825038|gb|EEV51968.1| ATP-dependent DNA helicase UvrD [Enterococcus faecium 1,141,733]
          Length = 744

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 48/222 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           NSF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 77  NSFFKMMEKRSYNRFNQEQKAAITYDMEKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 136

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 137 ERILMITFTRNAANELKKRV---------------------------------------D 157

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKST 176
              +    + + T H+        I ++FP  A   I   F+    ++   ++++  +  
Sbjct: 158 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFSKDTAQKVNAVLQQLIRKY 217

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
              +     E+   +  +  +  N   IE +I  +     ++
Sbjct: 218 NLYLFDQYGEKTIASRLDYWQNMNL-SIEEMIQLVKEKYDSI 258


>gi|302380636|ref|ZP_07269101.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
 gi|302311579|gb|EFK93595.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
          Length = 613

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 73/222 (32%), Gaps = 52/222 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +  T+++Q   S     A V A  G+GKT +L+ R+  L  + N  P ++L +T +K+ A
Sbjct: 1   MKFTENQQKAISHYESPALVLAVPGAGKTTVLLNRIKYLEKVHNVDPKSILSITFSKSQA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R  E                                                  T
Sbjct: 61  MDMKERFSEKFPET---------------------------------------NSAYFST 81

Query: 136 IHAFCEAIMQQFPLEANITSHFAIAD---EEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           IH+FC  I++ +    N    F I +   +     +I    +    +   D + E    +
Sbjct: 82  IHSFCYYIIKLYYKMNNRI--FKILESNNDTNKYLVIRNIMRKINKTNSKDEDVEKFLQY 139

Query: 193 YE------ILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
           Y       I++     DIE     I     + K   FF  + 
Sbjct: 140 YGYCKNMMIIKDFPKFDIENF-EQIYQEYESFKKKNFFIDFD 180


>gi|257893863|ref|ZP_05673516.1| UvrD/REP helicase [Enterococcus faecium 1,231,408]
 gi|257830242|gb|EEV56849.1| UvrD/REP helicase [Enterococcus faecium 1,231,408]
          Length = 728

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 48/222 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           NSF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 61  NSFFKMMEKRSYNRFNQEQKAAITYDMEKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 121 ERILMITFTRNAANELKKRV---------------------------------------D 141

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKST 176
              +    + + T H+        I ++FP  A   I   F+    ++   ++++  +  
Sbjct: 142 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFSKDTAQKVNAVLQQLIRKY 201

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
              +     E+   +  +  +  N   IE +I  +     ++
Sbjct: 202 NLYLFDQYGEKTIASRLDYWQNMNL-SIEEMIQLVKEKYDSI 242


>gi|156977336|ref|YP_001448242.1| DNA helicase IV [Vibrio harveyi ATCC BAA-1116]
 gi|156528930|gb|ABU74015.1| hypothetical protein VIBHAR_06122 [Vibrio harveyi ATCC BAA-1116]
          Length = 689

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++      LL L   + AA EM  
Sbjct: 203 SQQHAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQTQAEELLMLAFGRDAAKEMKE 262

Query: 81  RVLEIITAWSH 91
           R+++ +   + 
Sbjct: 263 RLVDKVGLAAE 273


>gi|119026245|ref|YP_910090.1| putative helicase IV [Bifidobacterium adolescentis ATCC 15703]
 gi|118765829|dbj|BAF40008.1| putative helicase IV [Bifidobacterium adolescentis ATCC 15703]
          Length = 690

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  QTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           +   EQ+   +    +  V A AG+GKT  ++  +  LL    A P  +L L+ TKA+A 
Sbjct: 131 ELSDEQISAIAGAGHNTLVLAGAGTGKTTTIIGYIAWLLATKRAAPEEILVLSFTKASAG 190

Query: 77  EMSHRVLEIITA 88
           +MS R++     
Sbjct: 191 DMSQRIMASTGK 202


>gi|254462466|ref|ZP_05075882.1| helicase IV [Rhodobacterales bacterium HTCC2083]
 gi|206679055|gb|EDZ43542.1| helicase IV [Rhodobacteraceae bacterium HTCC2083]
          Length = 953

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
           +T +    T  +++       +  V A AGSGKT ++  +   L+ +    P  +L L  
Sbjct: 181 DTFESNPLTPEQRISILSDEDATLVLAGAGSGKTSVITAKAGYLIKSGIRRPEEILLLAF 240

Query: 71  TKAAAAEMSHRVLEIITA 88
            + AA EMS R+ E    
Sbjct: 241 ARYAAKEMSERIEERCGE 258


>gi|148642791|ref|YP_001273304.1| putative DNA helicase II, UvrD [Methanobrevibacter smithii ATCC
            35061]
 gi|148551808|gb|ABQ86936.1| putative DNA helicase II, UvrD [Methanobrevibacter smithii ATCC
            35061]
          Length = 1488

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 37/229 (16%)

Query: 7    FQEHSETIDLIS--QTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHP 62
             +++S+  D +      S+Q  A      A  V A AGSGKT  +  +V  L    +  P
Sbjct: 1249 LKDNSDLFDDLDGKSLDSQQREAIVVDEDAVKVIAGAGSGKTFTIQGKVKYLTEKRDVDP 1308

Query: 63   STLLCLTHTKAAAAEMSHRVLE--IITAWSHLSDEILSAEITKIQGKKPNKSDMSK--AR 118
            S +L ++ + A+  ++  R+ E   I  +  +  +IL+      Q  +P+ S + +   R
Sbjct: 1309 SEILAISFSNASVDDLKERIAEPIDIKTFHKVGKDILTQY---NQYSRPDTSALKRIIKR 1365

Query: 119  HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
            +L    L+      +       + +++ F    N+        E+  K       +  L 
Sbjct: 1366 YLTKKALKNED---IS------KKLIEFFSFYINVPPS-----EDDIK------YEGDLL 1405

Query: 179  SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227
                  +      F  +     ++  ETL ++I+ +   L +  F F Y
Sbjct: 1406 DWQEGVD------FSTLKRRFKNKQRETLNNEIVRSYEELYIANFLFIY 1448


>gi|90408380|ref|ZP_01216543.1| putative ATP-dependent DNA helicase [Psychromonas sp. CNPT3]
 gi|90310543|gb|EAS38665.1| putative ATP-dependent DNA helicase [Psychromonas sp. CNPT3]
          Length = 581

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 49/181 (27%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKA 73
           S    EQ+ A     +  +SA  GSGKT  LV ++  +L  +   S     ++ +T+T  
Sbjct: 4   SNLTKEQMSAVTFEDNLLLSACPGSGKTRTLVSKLYYILENSDKLSIGKKKVIAITYTNI 63

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA  +S R+L                                               L V
Sbjct: 64  AADTISERLLSYGIK---------------------------------------DDSLWV 84

Query: 134 QTIHAFC-EAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            TIH+FC + I++    +   +   + I DE + +  + E ++       + N + ++ A
Sbjct: 85  GTIHSFCLQWIIKPNINKIPRLKHGYIIIDEYEQESKMRELREEF----EIGNYDPIQTA 140

Query: 192 F 192
            
Sbjct: 141 L 141


>gi|284008541|emb|CBA75080.1| exodeoxyribonuclease V beta subunit [Arsenophonus nasoniae]
          Length = 1164

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 9/153 (5%)

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
               +L +T T+AA  E+  R+   I     + + + I   E +  +    + +D ++A 
Sbjct: 18  SVEEILVVTFTEAATDELRSRIRHNIHQMRIACIRNGIGFDENSIYRILLSSIADKNEAA 77

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
             L+          + TIH FC+ ++     E+ +    +I  +E S  L ++A      
Sbjct: 78  QWLLAAERQMDEAAIYTIHGFCQRMLVHNAFESGMLFEQSIIKDEHS--LQQQACADFWR 135

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
                 +  + K       +    D E L+++I
Sbjct: 136 CNCYPQDYSISKVI-----VDEWSDPEALLAEI 163


>gi|153852732|ref|ZP_01994169.1| hypothetical protein DORLON_00151 [Dorea longicatena DSM 13814]
 gi|149754374|gb|EDM64305.1| hypothetical protein DORLON_00151 [Dorea longicatena DSM 13814]
          Length = 743

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 39/155 (25%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           ET   +   + ++           + A  GSGKT +LV R+  ++   N  P  +L +T+
Sbjct: 7   ETTFSVKLNQQQKEAVQSTKGPVLLLAVPGSGKTTVLVTRLGYMIYCKNIPPERILTVTY 66

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T AA  +MS R                                            +    
Sbjct: 67  TVAATKDMSERFAVRFGE-------------------------------------DMAKR 89

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
           L+ +TI+  C  I+Q +      T  F +  +E++
Sbjct: 90  LEFRTINGICARIIQYYGRRIGKTP-FELVKDEKA 123


>gi|169824344|ref|YP_001691955.1| DNA helicase II [Finegoldia magna ATCC 29328]
 gi|167831149|dbj|BAG08065.1| DNA helicase II [Finegoldia magna ATCC 29328]
          Length = 613

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 73/222 (32%), Gaps = 52/222 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +  T+++Q   S     A V A  G+GKT +L+ R+  L  + N  P ++L +T +K+ A
Sbjct: 1   MKFTENQQKAISHYESPALVLAVPGAGKTTVLLNRIKYLEKVHNVDPKSILSITFSKSQA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R  E                                                  T
Sbjct: 61  MDMKERFSEKFPET---------------------------------------DSAYFST 81

Query: 136 IHAFCEAIMQQFPLEANITSHFAIAD---EEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           IH+FC  I++ +    N    F I +   +     +I    +    +   D + E    +
Sbjct: 82  IHSFCYYIIKLYYKMNNRI--FKILESNNDTNKYLVIRNIMRKINKTNSKDEDVEKFLQY 139

Query: 193 YE------ILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
           Y       I++     DIE     I     + K   FF  + 
Sbjct: 140 YGYCKNMMIIKDFPKFDIENF-EQIYQEYESFKKKNFFIDFD 180


>gi|182419368|ref|ZP_02950620.1| putative ATP-dependent DNA helicase rep [Clostridium butyricum
           5521]
 gi|237666586|ref|ZP_04526571.1| putative ATP-dependent DNA helicase rep [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376699|gb|EDT74271.1| putative ATP-dependent DNA helicase rep [Clostridium butyricum
           5521]
 gi|237657785|gb|EEP55340.1| putative ATP-dependent DNA helicase rep [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 600

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 44/173 (25%)

Query: 10  HSETIDLISQTKSE--QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66
            S   D + Q K +  Q  A +   S  V A  GSGKT +L  ++++LL      P  L 
Sbjct: 1   MSYYKDKLEQIKRDSYQYDAYNSEDSTVVIAGPGSGKTTVLTLKIMKLLNEKIRKPRGLA 60

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           C+T +K AA E   R++++                                         
Sbjct: 61  CMTFSKEAAREFKDRLIKLGYTGRK----------------------------------- 85

Query: 127 TPGGLKVQTIHAFCEA-IMQQFPLE--ANITSHFAIADEEQSKKLIEEAKKST 176
               + + T+H+FC   ++++F      +I     I  ++   KL        
Sbjct: 86  ---NVFLGTVHSFCLKEVLERFAHLYSYDIPLPIKIISDKDKNKLFNTIVDDL 135


>gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon
          299 str. F0039]
 gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon
          299 str. F0039]
          Length = 896

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 30/68 (44%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
              +Q +       A V A  G GKT IL  R+ + LL    P  +LCLT T  AA  M
Sbjct: 7  PDSDQQRVIDIEEGDALVFAPPGCGKTQILTLRLQKALLHGVRPQDMLCLTFTNRAARGM 66

Query: 79 SHRVLEII 86
            R+   I
Sbjct: 67 LERIQSNI 74


>gi|317047604|ref|YP_004115252.1| UvrD/REP helicase [Pantoea sp. At-9b]
 gi|316949221|gb|ADU68696.1| UvrD/REP helicase [Pantoea sp. At-9b]
          Length = 684

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
              +Q    T++      S+     +   +  V A AGSGKT +LV R   LL    A P
Sbjct: 182 LQQYQTFFSTVETTPLNPSQCEAVVNGEDALLVLAGAGSGKTSVLVARAGWLLQRKLAQP 241

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITA-------WSHLSDEILSAEITKIQGKKPNKSDMS 115
             +L L   + AA EM+ R+   +         +  L+  I+     K       +SD  
Sbjct: 242 EQILLLAFGRQAAEEMNDRIQSRLGENAIQARTFHALALHIIREGSNKQPAISKLESDSK 301

Query: 116 KARHLLIT 123
             R LLI 
Sbjct: 302 ARRQLLIE 309


>gi|303234019|ref|ZP_07320668.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
 gi|302494944|gb|EFL54701.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
          Length = 613

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 73/222 (32%), Gaps = 52/222 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +  T+++Q   S     A V A  G+GKT +L+ R+  L  + N  P ++L +T +K+ A
Sbjct: 1   MKFTENQQKAISHYEYPALVLAVPGAGKTTVLLNRIKYLEKVHNVDPKSILSITFSKSQA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R  E                                                  T
Sbjct: 61  VDMKERFSEKFPET---------------------------------------DSAYFST 81

Query: 136 IHAFCEAIMQQFPLEANITSHFAIAD---EEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           IH+FC  I++ +    N    F I +   +     +I    +    +   D + E    +
Sbjct: 82  IHSFCYYIIKLYYKMNNRI--FKILESNNDTNKYLVIRNIMRKINKTNSKDEDVEKFLQY 139

Query: 193 YE------ILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
           Y       I++     DIE     I     + K   FF  + 
Sbjct: 140 YGYCKNMMIIKDFPKFDIENF-EQIYQEYESFKKKNFFIDFD 180


>gi|317481614|ref|ZP_07940650.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689582|ref|YP_004209316.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691543|ref|YP_004221113.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|316916974|gb|EFV38360.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456399|dbj|BAJ67021.1| putative DNA helicase [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|320460918|dbj|BAJ71538.1| putative DNA helicase [Bifidobacterium longum subsp. infantis
          157F]
          Length = 524

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           + ++  A+       + A AG+GKT  + +R+       A  P  +L +T +  AAAEM
Sbjct: 12 DERQRTAATTLQGPVRIIAGAGAGKTRTVTRRIAYACATGAWKPERVLAVTFSVKAAAEM 71

Query: 79 SHRV 82
            R+
Sbjct: 72 RARL 75


>gi|302869734|ref|YP_003838371.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572593|gb|ADL48795.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 707

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAA 74
          L      ++   + P     + A AG+GKT  +  R+  R L  +     +L +T T  A
Sbjct: 11 LAGLDPEQRSAVTAPAGPVCILAGAGTGKTRAVTSRIAYRALTGDIAGRHVLAVTFTARA 70

Query: 75 AAEMSHRV 82
          AAEM  R+
Sbjct: 71 AAEMRSRL 78


>gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM
          15606]
 gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM
          15606]
          Length = 901

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            +S+ L+ +       V A+ G GKT IL +RV +        S +LCLT T  AA  M
Sbjct: 7  PDESQALVINLQRGYHLVLASPGCGKTQILAERVAKAYAMGVSFSNMLCLTFTNRAARGM 66

Query: 79 SHRVLEIIT 87
            R+   + 
Sbjct: 67 QERIAMRLE 75


>gi|89893464|ref|YP_516951.1| hypothetical protein DSY0718 [Desulfitobacterium hafniense Y51]
 gi|89332912|dbj|BAE82507.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1631

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 61/218 (27%)

Query: 9    EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67
            +  +    +S T+ + ++    +R   V+A  GSGKT ILV ++  LLL  +     LL 
Sbjct: 1070 KFQQLFGELSPTQLD-IINDRTSRHIVVAAGPGSGKTRILVHKLAALLLMEDVKTEQLLM 1128

Query: 68   LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
            +T ++AAA E   R+L++I   +H  +                                 
Sbjct: 1129 VTFSRAAAHEFKKRLLKLIGNTAHYVE--------------------------------- 1155

Query: 128  PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                 ++T H++C  ++ +            +   E+S ++I+EA K        +   E
Sbjct: 1156 -----IKTFHSYCFDLLGK------------VGTVEKSAEIIQEAIKRI-----KNREVE 1193

Query: 188  LKKAFYEILEISNDEDIE----TLISDIISNRTALKLI 221
              +    +L I   +D++     LI  ++ +   +++I
Sbjct: 1194 PGRITKTVLVIDEAQDMDAHEYALIQALMEHNEEMRVI 1231


>gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
 gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
          Length = 906

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 43/148 (29%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +  + +       V A+ G GKT IL +RV +          +LCLT T  AA  M  RV
Sbjct: 11  QAAVIALQAGYHLVLASPGCGKTQILAERVAQAHAHGVDFGDMLCLTFTNRAARGMQERV 70

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + +   +                                        L +  +H FC  
Sbjct: 71  GQRLQVPA--------------------------------------DDLFIGNVHRFCSR 92

Query: 143 IMQQFPLEAN-ITSHFAIADEEQSKKLI 169
            +     +   + +  +I D++    ++
Sbjct: 93  FL----FDVGFVPASTSIIDDDDVLSIL 116


>gi|239620805|ref|ZP_04663836.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis CCUG
          52486]
 gi|239516381|gb|EEQ56248.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis CCUG
          52486]
          Length = 524

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           + ++  A+       + A AG+GKT  + +R+       A  P  +L +T +  AAAEM
Sbjct: 12 DERQRTAATTLQGPVRIIAGAGAGKTRTVTRRIAYACATGAWKPERVLAVTFSVKAAAEM 71

Query: 79 SHRV 82
            R+
Sbjct: 72 RARL 75


>gi|238749724|ref|ZP_04611229.1| Helicase IV (75 kDa helicase) [Yersinia rohdei ATCC 43380]
 gi|238712379|gb|EEQ04592.1| Helicase IV (75 kDa helicase) [Yersinia rohdei ATCC 43380]
          Length = 684

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
           Q   +++++    +S+     +   +  V A AGSGKT +LV R   LL  N   P  +L
Sbjct: 186 QAFFQSVEISPLNESQSQAVVNGEDAVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            L   + AA EM+ R+ + +      +    +  +  IQ        +SK
Sbjct: 246 LLAFGRQAADEMNSRIKQRLAIDDIQAKTFHALALQIIQQGSRKTPVISK 295


>gi|45656320|ref|YP_000406.1| DNA helicase II [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599554|gb|AAS69043.1| DNA helicase II [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 433

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           +  + ++Q + ++ TR   V A AGSGKT  +V  + R+L+ N  P  ++L LT ++ AA
Sbjct: 5   VQYSSAQQKVINENTRFVQVVAAAGSGKTSTMVGIIERILVENLFPKESVLVLTFSRKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
            E+S+R+ ++    S       +  +  +    P
Sbjct: 65  IEISNRIQKVTDKNSIRVQTFHAYCLYALSQWHP 98


>gi|24213188|ref|NP_710669.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|24193905|gb|AAN47687.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
          Length = 433

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           +  + ++Q + ++ TR   V A AGSGKT  +V  + R+L+ N  P  ++L LT ++ AA
Sbjct: 5   VQYSSAQQKVINENTRFVQVVAAAGSGKTSTMVGIIERILVENLFPKESVLVLTFSRKAA 64

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
            E+S+R+ ++    S       +  +  +    P
Sbjct: 65  IEISNRIQKVTDKNSIRVQTFHAYCLYALSQWHP 98


>gi|23464718|ref|NP_695321.1| DNA helicase II [Bifidobacterium longum NCC2705]
 gi|23325284|gb|AAN23957.1| probable DNA helicase II [Bifidobacterium longum NCC2705]
          Length = 524

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           + ++  A+       + A AG+GKT  + +R+       A  P  +L +T +  AAAEM
Sbjct: 12 DERQRTAATTLQGPVRIIAGAGAGKTRTVTRRIAYACATGAWKPERVLAVTFSVKAAAEM 71

Query: 79 SHRV 82
            R+
Sbjct: 72 RARL 75


>gi|149191540|ref|ZP_01869787.1| DNA helicase IV [Vibrio shilonii AK1]
 gi|148834614|gb|EDL51604.1| DNA helicase IV [Vibrio shilonii AK1]
          Length = 689

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q+          + A AGSGKT +L+ RV  LL ++ A    +L +   + AA EM  
Sbjct: 203 SQQMAVLHNNDQNLILAGAGSGKTSVLMARVSYLLQSHLAQVDQILLVAFGRDAANEMKQ 262

Query: 81  RVLEIITAWS 90
           R+ + +   +
Sbjct: 263 RLEKKLGQTA 272


>gi|330943474|gb|EGH45817.1| UvrD/REP helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 493

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
            + ++   + I+    +  ++        +  + A AG+GKT  ++ RV  L+ +  A P
Sbjct: 177 LDKYKALFDVIESQPLSAKQRRACVIDEDNNLILAGAGTGKTSTVIGRVAFLVHSGQAKP 236

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
             +L L +  AAAAEM  R+ + +      +D
Sbjct: 237 EEILLLAYGSAAAAEMRERLEKRLGVNGVTAD 268


>gi|315503784|ref|YP_004082671.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410403|gb|ADU08520.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 707

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAA 74
          L      ++   + P     + A AG+GKT  +  R+  R L  +     +L +T T  A
Sbjct: 11 LAGLDPEQRSAVTAPAGPVCILAGAGTGKTRAVTSRIAYRALTGDIAGRHVLAVTFTARA 70

Query: 75 AAEMSHRV 82
          AAEM  R+
Sbjct: 71 AAEMRSRL 78


>gi|253577471|ref|ZP_04854786.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843171|gb|EES71204.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 584

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 73/217 (33%), Gaps = 51/217 (23%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
           L++    EQ+   +   +  V A  GSGKT  LV    +L+           +  +T+T 
Sbjct: 3   LLNTLSLEQMDIVEYNDNLLVIACPGSGKTRTLV---AKLIYEGTKLKKNEKIAAITYTN 59

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E++ R+       + + D+                                     
Sbjct: 60  LAAEEIALRL-----DTNCIDDQFY----------------------------------W 80

Query: 133 VQTIHAFC-EAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELK 189
             TIH+FC   I++ +      +   +   DE+  ++++     +  L ++  +      
Sbjct: 81  GGTIHSFCTNWIIKPYSHILKELKYGYTFLDEDDVEEILNSIMDTLDLRNVEFNTRRNQN 140

Query: 190 KAFYEILEISND---EDIETLISDIISNRTALKLIFF 223
             F  I + ++    E    L ++ + +   +    +
Sbjct: 141 GDFISINDENSLLLKEYDHRLKNERLVDYDLILYYSY 177


>gi|146277860|ref|YP_001168019.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556101|gb|ABP70714.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025]
          Length = 978

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLC 67
           +  +TI+    T  ++L       +  V A AGSGKT ++  +   L+ A    P  +L 
Sbjct: 192 DFFDTIESKPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRKPEEILL 251

Query: 68  LTHTKAAAAEMSHRVLEI--ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L   K AA EMS RV     +   +     I    I  ++G KP  +D +        ++
Sbjct: 252 LAFAKNAAEEMSERVEARSGVPISARTFHAIAYDIIGIVEGSKPALADHATDDLAFRNLI 311

Query: 126 ET 127
           + 
Sbjct: 312 KQ 313


>gi|227546827|ref|ZP_03976876.1| DNA helicase II [Bifidobacterium longum subsp. infantis ATCC
          55813]
 gi|227212789|gb|EEI80670.1| DNA helicase II [Bifidobacterium longum subsp. infantis ATCC
          55813]
          Length = 524

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           + ++  A+       + A AG+GKT  + +R+       A  P  +L +T +  AAAEM
Sbjct: 12 DERQRTAATTLQGPVRIIAGAGAGKTRTVTRRIAYACATGAWKPERVLAVTFSVKAAAEM 71

Query: 79 SHRV 82
            R+
Sbjct: 72 RARL 75


>gi|293572921|ref|ZP_06683871.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
 gi|291607049|gb|EFF36421.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
          Length = 744

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 48/222 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           NSF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 77  NSFFKMMEKRSYNRFNQEQKAAITYDMQKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 136

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                 + R    
Sbjct: 137 ERILMITFTRNAANELKKRVDNF------------------------------RQRK--- 163

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKST 176
                   + + T H+        I ++FP  A   I   F+    ++   ++++  +  
Sbjct: 164 ------TAVHIGTFHSIFFRIYNEICRKFPDVAMQGIQGDFSKDTAQKVNAVLQQLIRKY 217

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
              +     E+   +  +  +  N   IE +I  +     ++
Sbjct: 218 NLYLFDQYGEKTIASRLDYWQNMNL-SIEEMIQLVKEKYDSI 258


>gi|12581465|gb|AAG59610.1| ATP-dependent DNA helicase A [Clostridium cellulovorans]
          Length = 193

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 80/217 (36%), Gaps = 50/217 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            K ++        +  + A  G+GKT +++ RV  L+         ++ +T TKAAA  M
Sbjct: 8   DKDQRKAVYCEDGNTLIVAAPGAGKTTVIINRVYHLIKNRGIDYRNIIVITFTKAAAENM 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R       +  LSD+          G+ P                         T H 
Sbjct: 68  KQR-------YKKLSDD----------GRVPFF----------------------GTFHG 88

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I++ +    +I     + + +++  ++++   + +  I  +  +E       +++ 
Sbjct: 89  LFYKILRNY---IDI----KLIETKEAYGIVKKVLVTYMDEISEEKIKETLSTI-SLVKT 140

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           S + +IE ++   I     L+    + +Y   + +++
Sbjct: 141 SRNIEIEAVVK--IDKDIFLRCYESYENYKKSKGLMD 175


>gi|329946348|ref|ZP_08293915.1| HRDC domain protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527324|gb|EGF54322.1| HRDC domain protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 706

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPST 64
          +  + +  ++ +   + E  +A        V A AG+GKT  +  R+   ++  A   + 
Sbjct: 20 AQLDAARLLEALDPDQRE--VAEHLEGPLCVLAGAGTGKTRAITYRIAHGVVTGAYQATQ 77

Query: 65 LLCLTHTKAAAAEMSHRVLEI 85
          +L +T T  AA EM  R+ ++
Sbjct: 78 VLAVTFTARAAGEMRSRLADL 98


>gi|318060453|ref|ZP_07979176.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 1839

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
              T    V A  G+GKT  LV+ V   + A A P  LL LT ++ AA  +  R+   I
Sbjct: 2  VEHRTGPLLVLAGPGTGKTETLVESVAARVEAGADPERLLVLTFSRKAAVSLRDRMALRI 61

Query: 87 TAWS 90
             S
Sbjct: 62 GPAS 65


>gi|254487901|ref|ZP_05101106.1| helicase IV [Roseobacter sp. GAI101]
 gi|214044770|gb|EEB85408.1| helicase IV [Roseobacter sp. GAI101]
          Length = 943

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTL 65
           + +  ++ +    T  ++L       +  V A AGSGKT ++  +   LL A    P  +
Sbjct: 165 WSDFLDSFETNPLTPEQRLAVIADEDATLVLAGAGSGKTSVITAKAGYLLKAGIRKPEEI 224

Query: 66  LCLTHTKAAAAEMSHRVLEIITA 88
           L L   + AA EMS R+ +    
Sbjct: 225 LLLAFARDAAVEMSERIEQKCGE 247


>gi|157375392|ref|YP_001473992.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
 gi|157317766|gb|ABV36864.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
          Length = 1020

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 69/182 (37%), Gaps = 34/182 (18%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           ++ H +F ++ E+ + +++ +    +  D   +  + A AG+GKT ++V R   L+ +  
Sbjct: 282 LLRHKAFFDNVES-NPLTEKQRRACVIDD--NNNLLLAGAGTGKTSVMVGRAGYLIESGQ 338

Query: 61  HP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
                +L L + K AA EM  R+   +       ++                        
Sbjct: 339 AIADDILLLAYGKVAAKEMEERIKLKLGPLLGSPEKNQGQ-------------------- 378

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA--IADEEQSKKLIEEAKKSTL 177
                +     ++V T H+    I+ +       T   +  I DE+  +  + +A +S +
Sbjct: 379 -----MGVGNDIRVSTFHSLGLRIITE---VEGTTPKLSPWINDEKGKESWLNDALESLI 430

Query: 178 AS 179
             
Sbjct: 431 KE 432


>gi|304397117|ref|ZP_07378996.1| UvrD/REP helicase [Pantoea sp. aB]
 gi|304355266|gb|EFM19634.1| UvrD/REP helicase [Pantoea sp. aB]
          Length = 677

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
            + +Q    +++     +S+     +   S  V A AGSGKT +LV R   L+    A  
Sbjct: 175 LSRYQAFFASVESTPLNQSQCEAVVNGENSLLVLAGAGSGKTSVLVARAGWLMQRKLASA 234

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITA-------WSHLSDEILSAEITKIQGKKPNKSDMS 115
             +L L   + AA EM+ R+   ++A       +  L+  I+     K       +SD  
Sbjct: 235 DQILLLAFGREAAKEMNERIQSRLSADDIQARTFHSLALHIIREGSNKQPVISKLESDAD 294

Query: 116 KARHLLIT 123
             R LLI 
Sbjct: 295 ARRALLIR 302


>gi|257899979|ref|ZP_05679632.1| UvrD/REP helicase [Enterococcus faecium Com15]
 gi|257837891|gb|EEV62965.1| UvrD/REP helicase [Enterococcus faecium Com15]
          Length = 728

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 48/222 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           NSF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 61  NSFFKMMEKRSYNRFNQEQKAAITYDMQKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 121 ERILMITFTRNAANELKKRV---------------------------------------D 141

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKST 176
              +    + + T H+        I ++FP  A   I   F+    ++   ++++  +  
Sbjct: 142 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPDVAMQGIQGDFSKDTAQKVNAVLQQLIRKY 201

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
              +     E+   +  +  +  N   IE +I  +     ++
Sbjct: 202 NLYLFDQYGEKTIASRLDYWQNMNL-SIEEMIQLVKEKYDSI 242


>gi|90413294|ref|ZP_01221288.1| hypothetical helicase IV [Photobacterium profundum 3TCK]
 gi|90325695|gb|EAS42158.1| hypothetical helicase IV [Photobacterium profundum 3TCK]
          Length = 694

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++ ++ E +L +       V A AG+GKT +LV R   L+    A P  +L L   + AA
Sbjct: 197 LNPSQREAVLIN--QDHNLVLAGAGTGKTSVLVARAGYLVANQSAQPEEILMLAFGRKAA 254

Query: 76  AEMSHRVLEIITAWSHLS--DEILSAEITKIQGKKPNKSDMS 115
            EM  R+   +     ++    + +  I  ++ ++PN S ++
Sbjct: 255 EEMRERLALKVNDRIKVATFHALGTQIIQSVEDERPNVSPLA 296


>gi|118580292|ref|YP_901542.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
 gi|118503002|gb|ABK99484.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
          Length = 591

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 43/162 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAA 74
           +++   EQ LA        ++A  GSGKT +L+ ++   L  L       +  +T T  A
Sbjct: 3   LAKLNHEQKLAVKQEGHVLLTACPGSGKTRVLIHKLAYNLSKLPENSKKRIAAVTFTVRA 62

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           + E+  R                                       L  I      +   
Sbjct: 63  SEEIFRR---------------------------------------LNGIGINSNNIWSG 83

Query: 135 TIHAFC-EAIMQQF-PLEANITSHFAIADEEQSKKLIEEAKK 174
           T+H+FC E I++ +      +++ FAIADE    +L+   K 
Sbjct: 84  TLHSFCFEWIIKPYSCYLPELSNGFAIADEAFCAELVSSLKD 125


>gi|282866609|ref|ZP_06275651.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558511|gb|EFB64071.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 1137

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 41/153 (26%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +         V A  G+GKT  LV+ V   + A   P+ +L LT ++ AA E+  R
Sbjct: 41  AQRAVVDHRDGPLLVLAGPGTGKTTTLVEAVAARVAAGTDPARMLVLTFSRKAAVELRDR 100

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +   +                                           G +  T H++C 
Sbjct: 101 MATRLGGAR---------------------------------------GPQATTFHSYCY 121

Query: 142 AIMQQFPLEANITSHF-AIADEEQSKKLIEEAK 173
           A+++    +A++ +    +    +    + E  
Sbjct: 122 ALVRAH-QDADLFADPLRLLSGPEQDVAVRELL 153


>gi|312883349|ref|ZP_07743075.1| DNA helicase IV [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368965|gb|EFP96491.1| DNA helicase IV [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 685

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           I+      S++        +  V A AGSGKT +L+ RV  LL ++ A    LL L   +
Sbjct: 195 IEASPLNDSQRRAVLLNDDNNLVLAGAGSGKTSVLIARVAYLLQSHLAQSEELLMLAFGR 254

Query: 73  AAAAEMSHRVLEIIT 87
            AA EM  R+ + I 
Sbjct: 255 DAAQEMKQRLSDKIG 269


>gi|66046145|ref|YP_235986.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256852|gb|AAY37948.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
           B728a]
          Length = 1473

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 17  ISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKA 73
           + +  + Q +    D   +  + A  GSGKT ++V R+  LL     P+  ++ LT  + 
Sbjct: 856 VEKLSAAQRIIVSDDDDVNRLILAGPGSGKTRVIVHRIAYLLRVRRVPARCIVALTFNRH 915

Query: 74  AAAEMSHRVLEIITAWS 90
           AA E+  R+++++ A +
Sbjct: 916 AANEIKQRLIKLVGADA 932


>gi|168205259|ref|ZP_02631264.1| putative UvrD/REP helicase [Clostridium perfringens E str. JGS1987]
 gi|170663217|gb|EDT15900.1| putative UvrD/REP helicase [Clostridium perfringens E str. JGS1987]
          Length = 570

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 86/219 (39%), Gaps = 50/219 (22%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++      ++   + A AGSGKT ++ ++V +L+     P ++ C++ T+AAA E+  R
Sbjct: 10  KQKQFVFSKSKKILLIACAGSGKTLVITRKVGQLIDERVSPESIYCISFTRAAAMELKTR 69

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++++           LS ++                                 T H+F  
Sbjct: 70  LIKL---------NKLSKDVNA------------------------------TTFHSFII 90

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
             M+++       S+F++  + +   ++    +      +    E  K +      I++D
Sbjct: 91  CFMKKYC-----NSNFSMITDSEKDIVLNNICQRFKIKSIKKFKEAYKTSL-----INDD 140

Query: 202 EDIETLISDIISNRTALKLIFF-FFSYLWRRKIIEKSLW 239
           + I+  I++ I     L L+       L+ +KI E S+ 
Sbjct: 141 KSIQYAINEYIFRLNYLNLMDIDILLPLFLKKIKEDSIL 179


>gi|295107845|emb|CBL21798.1| Superfamily I DNA and RNA helicases [Ruminococcus obeum A2-162]
          Length = 1125

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 8   QEHSETIDLISQT--------KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA- 58
           QE  E +D I +         ++++ +         V A AG+GKT  +  +V  L+   
Sbjct: 117 QEEKEYLDNILKDIDPDICLDENQREVILSDEDHGLVVAGAGAGKTTTVAAKVKYLVEKQ 176

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           +  PS +L ++ T  A  E+  R+ + + 
Sbjct: 177 HIDPSQILIISFTNKAVNELRERINKDLN 205


>gi|28210415|ref|NP_781359.1| DNA helicase II [Clostridium tetani E88]
 gi|28202852|gb|AAO35296.1| DNA helicase II [Clostridium tetani E88]
          Length = 720

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 68/201 (33%), Gaps = 44/201 (21%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NA 60
           IY   F  +      I+ T  +  +  + +    V A  GSGKT  L+ R   L+L  N 
Sbjct: 9   IYKKKFLSYLRNNCNINLTNEQSEVVFNISGPMAVVAVPGSGKTTTLICRTANLILNHNV 68

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  +L L+ +KA+A +M  R                                      L
Sbjct: 69  DPKKILGLSFSKASAMDMRSRFDN-----------------------------------L 93

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS----KKLIEEAKKST 176
              I++        TIH+F   ++  +    NI   + I   + S      L++   K  
Sbjct: 94  FGNIVKNKVAF--STIHSFAYYVINNYSRRHNI--KYTIIGSKNSPVNPTILLKNIYKKY 149

Query: 177 LASIMLDNNEELKKAFYEILE 197
               + D+  E   +F   L+
Sbjct: 150 NNDFISDDKLEELSSFIGYLK 170


>gi|314986290|gb|EFT30382.1| HRDC domain protein [Propionibacterium acnes HL005PA2]
 gi|314989623|gb|EFT33714.1| HRDC domain protein [Propionibacterium acnes HL005PA3]
          Length = 706

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L++    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 22 LVALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|297194169|ref|ZP_06911567.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152140|gb|EDY65903.2| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 639

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 13  TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST------L 65
            +D    T  ++ +   P      V+A AG+GKTH LV+R L  L  +  P        +
Sbjct: 9   YLDSPPLTDEQRAVVEQPWGARVLVTAGAGAGKTHTLVRR-LDALCGHEDPEEALEAAEI 67

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
           L LT+++AAA E+  R+         +  +   A
Sbjct: 68  LVLTYSRAAARELRERIARHGERARRVRAQTFDA 101


>gi|28210690|ref|NP_781634.1| DNA helicase II [Clostridium tetani E88]
 gi|28203128|gb|AAO35571.1| DNA helicase II [Clostridium tetani E88]
          Length = 698

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 44/200 (22%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           +++  I   K +        R+  V A  GSGKT +++ R+  L+         +  +T 
Sbjct: 29  KSLKEIRLDKYQMEAVKSNHRNLVVIAPPGSGKTFVIINRIFYLMKERGVCGKNIFAMTF 88

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           TK+AA +M  R L                              + KA +     + TP  
Sbjct: 89  TKSAAKDMERRFL-----------------------------ILKKANNYYS--MHTPFF 117

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
               T+H+    I++ +    N      I  E++S  +IE+  K    +I     E +K 
Sbjct: 118 ---GTLHSLFYNILRTYCGVIN------IISEKESIFIIEKVLKKYTNNI---REELVKD 165

Query: 191 AFYEILEISNDEDIETLISD 210
               I +  + + I+  I +
Sbjct: 166 VLNNISKYKSKQRIDNHIDE 185


>gi|314927508|gb|EFS91339.1| HRDC domain protein [Propionibacterium acnes HL044PA1]
          Length = 713

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 28 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 87

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 88 AGTMKGRLADL 98


>gi|314972550|gb|EFT16647.1| HRDC domain protein [Propionibacterium acnes HL037PA3]
          Length = 719

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
           L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 34  LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 93

Query: 75  AAEMSHRVLEI 85
           A  M  R+ ++
Sbjct: 94  AGTMKGRLADL 104


>gi|313837611|gb|EFS75325.1| HRDC domain protein [Propionibacterium acnes HL037PA2]
          Length = 719

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
           L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 34  LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 93

Query: 75  AAEMSHRVLEI 85
           A  M  R+ ++
Sbjct: 94  AGTMKGRLADL 104


>gi|89074565|ref|ZP_01161037.1| hypothetical helicase IV [Photobacterium sp. SKA34]
 gi|89049669|gb|EAR55228.1| hypothetical helicase IV [Photobacterium sp. SKA34]
          Length = 693

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           ++ +  +   S++  A        V A AG+GKT +LV R   L+    A P  +L L  
Sbjct: 190 DSFERSALNDSQREAALINQDHNLVLAGAGTGKTSVLVARAGYLIASQQAVPEDILMLAF 249

Query: 71  TKAAAAEMSHRVLEIITAWSHLS--DEILSAEITKIQGKKPN 110
            + AA EMS R+ E ++    ++    + S  I +++ +KPN
Sbjct: 250 GRKAAEEMSERMGEKVSDRVKVATFHSLGSQIIAEVEKEKPN 291


>gi|119026181|ref|YP_910026.1| DNA helicase II [Bifidobacterium adolescentis ATCC 15703]
 gi|118765765|dbj|BAF39944.1| probable DNA helicase II [Bifidobacterium adolescentis ATCC 15703]
          Length = 499

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
            +D +    ++++ A+       + A AG+GKT  + +R+       A  P   L +T +
Sbjct: 8   ILDGLDD--AQRMAATAVRGPVRIIAGAGAGKTRTVTRRIAYACAIKAWDPHATLAVTFS 65

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN 110
             AAAEM +R+ ++  A    +    SA + +++   P+
Sbjct: 66  VKAAAEMRNRLSQLDVASDVKAATFHSAALHQLRRIWPD 104


>gi|330996006|ref|ZP_08319900.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329574003|gb|EGG55581.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 939

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           +   + ++ +         V A AG+GKT  +  +V  L+      P  +L +++T  A 
Sbjct: 137 VKLDEEQRRVVLSDEDYTLVVAGAGAGKTTTMAAKVKYLVEKRGVKPEQILVISYTNKAV 196

Query: 76  AEMSHRVLEIIT 87
            E+  ++ + + 
Sbjct: 197 GELRSKINKGLK 208


>gi|258511682|ref|YP_003185116.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478408|gb|ACV58727.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 462

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 43/191 (22%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
            T+ +  +      S+ V A  GSGKT ++ + +  ++      P  +L +T T+ AA  
Sbjct: 2   WTEEQWAVIEPKDASSVVVAAPGSGKTTVMTEHLAHVIATGRTPPQRILAMTFTRQAAEH 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  ++        H     +  E   +                              T H
Sbjct: 62  MRQKLR------GHERLRPVDVESCAM-----------------------------GTFH 86

Query: 138 A-FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           A F  A++     EA+    + +  + +   L+ EA    L      +  EL+       
Sbjct: 87  AVFFRALL-----EAD-RQVYPVLGQREQYALMREAMVDVLGERHAASMYELQSYLTLYS 140

Query: 197 EISNDEDIETL 207
            +    + + L
Sbjct: 141 RMIGRREQDEL 151


>gi|104781136|ref|YP_607634.1| ATP-dependent DNA helicase, RecQ-like [Pseudomonas entomophila L48]
 gi|95110123|emb|CAK14830.1| putative ATP-dependent DNA helicase, RecQ-like [Pseudomonas
            entomophila L48]
          Length = 1735

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 1    MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
            + Y  S     + ++ +S  + + ++ ++   +  V A  GSGKT ++V R+  LL    
Sbjct: 1077 LKYATSEASWQKIVEDLSPAQRD-IVTNEHDNNCLVLAGPGSGKTRVIVHRIAYLLRVRR 1135

Query: 61   HPST-LLCLTHTKAAAAEMSHRVLEIITAWSH 91
             PS+ ++ LT  + AA E+  R+  ++ A + 
Sbjct: 1136 VPSSAVVALTFNRHAANEIRKRLRTLVGADAR 1167


>gi|59712229|ref|YP_205005.1| DNA helicase IV [Vibrio fischeri ES114]
 gi|59480330|gb|AAW86117.1| DNA helicase IV [Vibrio fischeri ES114]
          Length = 687

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            +S+Q           V A AGSGKT +LV RV  L+ +  A    +L L   + AA EM
Sbjct: 198 NESQQSALLLNEDHTLVLAGAGSGKTSVLVARVNYLIQSGQAQADEILLLAFGRQAAQEM 257

Query: 79  SHRVLEIIT 87
           S R+++ + 
Sbjct: 258 SGRIIDKLG 266


>gi|197335191|ref|YP_002156443.1| helicase IV [Vibrio fischeri MJ11]
 gi|197316681|gb|ACH66128.1| helicase IV [Vibrio fischeri MJ11]
          Length = 687

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
            +S+Q           V A AGSGKT +LV RV  L+ +  A    +L L   + AA EM
Sbjct: 198 NESQQSALLLNEDHTLVLAGAGSGKTSVLVARVNYLIQSGQAQADEILLLAFGRQAAQEM 257

Query: 79  SHRVLEIIT 87
           S R+++ + 
Sbjct: 258 SGRIIDKLG 266


>gi|241762979|ref|ZP_04761041.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241367931|gb|EER62150.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 592

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 42/175 (24%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82
           Q  A +      V A  GSGKT  L  ++ RLL  + A P  + C+T     A E+  R+
Sbjct: 20  QWAAYESRGHCIVLAGPGSGKTKTLTTKMARLLAEDVAEPRGVACITFNNECARELEGRL 79

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE- 141
                                  G +P+                  G + + T+H+F   
Sbjct: 80  --------------------AALGVEPD------------------GRVFIGTVHSFSLT 101

Query: 142 AIMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            I+  +   A   +   F +A   + +  +  A   T+       + E + A Y 
Sbjct: 102 QIILPYAKVAGLGLPDDFGVATRAERQAALSNAVLRTMDYAGNPQDWEFRLASYR 156


>gi|290243129|ref|YP_003494799.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945634|gb|ADC73332.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 611

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +    Q  A        VSA  GSGKT +L+ R  R LL       +  +T T+A+A 
Sbjct: 7   LEELNDNQREAVTSDGHCLVSACPGSGKTRVLITR-ARRLLDQDPKHRVAAVTFTQASAI 65

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM+ R +              +     +   +  ++  +KA  +L T      G  +   
Sbjct: 66  EMTQR-MSAEGLPPRELQRFQAGTFHSLALSQATQARKAKASQILAT------GEWIS-- 116

Query: 137 HAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEE 171
                 I++      +   +     +AD E+    ++E
Sbjct: 117 ------ILRNAIDQAVRDGMDP--ELADYEEISLQVQE 146


>gi|300814173|ref|ZP_07094456.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511830|gb|EFK39047.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 613

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          +  T+ ++L+       A V A  G+GKT IL+ R L L+        +L +T +KAA  
Sbjct: 1  MELTEKQKLVTLHRDGPALVLAVPGAGKTTILLHRTLNLIKTGVDAKRILTITFSKAATN 60

Query: 77 EMSHR 81
          EMS R
Sbjct: 61 EMSKR 65


>gi|282882935|ref|ZP_06291540.1| UvrD/REP helicase [Peptoniphilus lacrimalis 315-B]
 gi|281297346|gb|EFA89837.1| UvrD/REP helicase [Peptoniphilus lacrimalis 315-B]
          Length = 613

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          +  T+ ++L+       A V A  G+GKT IL+ R L L+        +L +T +KAA  
Sbjct: 1  MELTEKQKLVTLHRDGPALVLAVPGAGKTTILLHRTLNLIKTGVDAKRILTITFSKAATN 60

Query: 77 EMSHR 81
          EMS R
Sbjct: 61 EMSKR 65


>gi|300716125|ref|YP_003740928.1| Helicase IV [Erwinia billingiae Eb661]
 gi|299061961|emb|CAX59077.1| Helicase IV [Erwinia billingiae Eb661]
          Length = 684

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 4/123 (3%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
           + +   T++      S+     +   +  V A AGSGKT +LV R   LL+   A    +
Sbjct: 185 YADFFNTVETSPLNSSQAKAVVNGEDALLVLAGAGSGKTSVLVARAGWLLMRKQASAEQI 244

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLI 122
           L L   + AA EM+ R+   +      +    S  +  IQ    K P+ S +     L  
Sbjct: 245 LLLAFGRQAAEEMNERIKARLNTDGIQARTFHSLALNIIQQGSSKSPSISKLETDTTLRH 304

Query: 123 TIL 125
            +L
Sbjct: 305 KLL 307


>gi|154500456|ref|ZP_02038494.1| hypothetical protein BACCAP_04128 [Bacteroides capillosus ATCC
           29799]
 gi|150270687|gb|EDM97983.1| hypothetical protein BACCAP_04128 [Bacteroides capillosus ATCC
           29799]
          Length = 702

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 40/160 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           I     ++    +      + A  GSGKT +LV R+  +  +    P ++L +T+T AAA
Sbjct: 12  IRLDPQQEAAVQETEGPVLLLAVPGSGKTTVLVTRLGYMCYVRGIKPESILTMTYTVAAA 71

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R                                            E    L  +T
Sbjct: 72  RDMERRFASCFGE-------------------------------------EAAKRLSFRT 94

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSK-KLIEEAKK 174
           I+  C  I++ +      ++ F + ++   K  L+ E  +
Sbjct: 95  INGVCSRIIRYYERVMGRSA-FRLLEDGSQKSALLGELYR 133


>gi|302536759|ref|ZP_07289101.1| ATP-dependent DNA helicase [Streptomyces sp. C]
 gi|302445654|gb|EFL17470.1| ATP-dependent DNA helicase [Streptomyces sp. C]
          Length = 235

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 39/126 (30%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +++ +         V A  G+GKT  LV+     + A   P+ +L LT ++ AA E+  R
Sbjct: 37  AQRAVVDHTRGPLLVLAGPGTGKTTTLVEAAAARVEAGTDPARILILTFSRKAAVELRDR 96

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
               +                                                T H+FC 
Sbjct: 97  AALRLGGARAPQA---------------------------------------TTFHSFCY 117

Query: 142 AIMQQF 147
            +++  
Sbjct: 118 GLVRAH 123


>gi|85059009|ref|YP_454711.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans']
 gi|84779529|dbj|BAE74306.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans']
          Length = 684

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           ++    ++      ++     +  RS  V A AGSGKT +LV R   LL    A P  +L
Sbjct: 186 EDFFHAVESSPLNLAQSRAVVNGERSLLVLAGAGSGKTSLLVARAGWLLRRKLATPEQIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            L   + AA EM  R+ + +   S  +    +  +  I+        +S+
Sbjct: 246 LLAFGRQAAQEMDERLRQRLDVDSIQASTFHALALMIIRQGNKKAPAVSQ 295


>gi|213691669|ref|YP_002322255.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|213523130|gb|ACJ51877.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|320457760|dbj|BAJ68381.1| putative DNA helicase [Bifidobacterium longum subsp. infantis
          ATCC 15697]
          Length = 524

 Score = 73.0 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
           + ++  A+       + A AG+GKT  + +R+       A  P  +L +T +  AAAEM
Sbjct: 12 DERQRTAATTLQGPVRIIAGAGAGKTRAVTRRIAYACATGAWKPERVLAVTFSVKAAAEM 71

Query: 79 SHRV 82
            R+
Sbjct: 72 RARL 75


>gi|163733653|ref|ZP_02141095.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
           litoralis Och 149]
 gi|161392764|gb|EDQ17091.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
           litoralis Och 149]
          Length = 908

 Score = 73.0 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 80/231 (34%), Gaps = 59/231 (25%)

Query: 13  TIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTH 70
            ++ +     + ++  D  R +  V A  GSGKT +LV R+  LL      S  +L L +
Sbjct: 126 IVEDLKNKVQQDIVTDDRDRTNVLVLAGPGSGKTRVLVHRIAYLLRMKREDSRGILVLAY 185

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            + AAAE+  R+  ++                                       +   G
Sbjct: 186 NRHAAAEIRVRLRALVG--------------------------------------DDAAG 207

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE-----------EAKKSTLAS 179
           + + T H+    ++      + I +     D   ++ + +           EA++ +L  
Sbjct: 208 VTISTCHSLAMRLVG--ASFSGIDADTTDFDNIITEAVGQLNGNGLSRSEAEAQRDSLIE 265

Query: 180 ----IMLDNNEELKKAFYEILEISNDEDIE--TLISDIISNRTALKLIFFF 224
               I++D  +++    Y ++       +E   L   + +     + I+ F
Sbjct: 266 GYRWILVDEYQDIGPEEYALISAVAGRSLEDADLKLSLFAVGDDDQNIYAF 316


>gi|253575082|ref|ZP_04852421.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845538|gb|EES73547.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 732

 Score = 73.0 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 57/199 (28%), Gaps = 51/199 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            +   + ++           + A+ GSGKT  ++ R+  L+      P  +  +T ++A+
Sbjct: 16  GVELNEIQKQAVLQTEGPLLLLASPGSGKTTTIIMRIGYLIEEKGVPPRRIKAVTFSRAS 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A +M  R        + +                                          
Sbjct: 76  ANDMKERFKAFFPELTPVDF---------------------------------------S 96

Query: 135 TIHAFCEAIMQQFP---------LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           TIH+    ++++           +E +I +        +   L ++     L   +   N
Sbjct: 97  TIHSLAYEVVREHFRATQTPFQIIEGDIDAAQQETSGSEQLPLHKKIILRNLFKAIAGEN 156

Query: 186 --EELKKAFYEILEISNDE 202
             ++        +    ++
Sbjct: 157 ITDDQLDELTTYISFIKNK 175


>gi|288917908|ref|ZP_06412268.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288350697|gb|EFC84914.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1157

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 37/193 (19%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71
            +D +     ++  A        V A  G+GKT  LV  +   +   A P    L +T T
Sbjct: 514 VLDGLD--PDQRRAAEQVGGPMLVLAGPGTGKTRTLVHAIAYRVRELAVPAEQCLAVTFT 571

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           + AA                L   + +     + G     +  +                
Sbjct: 572 RRAAG----------ELRERLDLLLGTDTAGSVAGSTAGSAVTA---------------- 605

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
              T H    AI+++        +   +AD+    +L++EA          ++ +  ++ 
Sbjct: 606 --TTFHGLGLAIIRERHEALARAAEVRVADDAVRDELVDEALH------GAESPQARRRV 657

Query: 192 FYEILEISNDEDI 204
             E+ ++     +
Sbjct: 658 VAELADLKRRRAL 670


>gi|182438462|ref|YP_001826181.1| putative DNA helicase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466978|dbj|BAG21498.1| putative DNA helicase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 641

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 43/135 (31%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTH 70
           D    T+ ++ +   P      V+A AG+GKTH LV+R+  LL           +L L+ 
Sbjct: 11  DSPPLTEEQRAVVEQPWDARLLVTAGAGAGKTHTLVRRLDALLGHEEDALEAGEILVLSF 70

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           ++AA  E+  R+                                 +AR +          
Sbjct: 71  SRAAVRELRERI----------------------------ALHARQARRV---------- 92

Query: 131 LKVQTIHAFCEAIMQ 145
            +VQT  ++  ++++
Sbjct: 93  -RVQTFDSWAYSVLR 106


>gi|167957199|ref|ZP_02544273.1| DNA-dependent ATPase I and helicase II [candidate division TM7
           single-cell isolate TM7c]
          Length = 811

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 40/132 (30%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           ++    Q  A D    S  V A  G+GKT +L  R  ++L   +  P+++LCLT T++ A
Sbjct: 8   AKLNDNQRQAVDYIHGSLLVIAGPGTGKTELLSMRTAQILRQTDTLPNSILCLTFTESGA 67

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             M  R+ +II                                       E    + + T
Sbjct: 68  TNMRQRLRQIIG--------------------------------------EDAYKIAIHT 89

Query: 136 IHAFCEAIMQQF 147
            H+F   I+ Q 
Sbjct: 90  FHSFGTEIINQH 101


>gi|13541570|ref|NP_111258.1| DNA helicase II [Thermoplasma volcanium GSS1]
 gi|14324966|dbj|BAB59892.1| rep helicase single-stranded DNA-dependent ATPase [Thermoplasma
           volcanium GSS1]
          Length = 885

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 33/123 (26%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            VSA  G+GKT  L  + + L+ +    + +LCLT T  A   M   +L+          
Sbjct: 5   LVSAGPGTGKTTSLSSKYVSLVKSGVDQNDILCLTFTNKAVDNMREAILKTAQR------ 58

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E +  E+ K                           L V T H+F    ++       I 
Sbjct: 59  EGVELELHK---------------------------LNVHTFHSFAFHFVKNLGYRDIIN 91

Query: 155 SHF 157
            +F
Sbjct: 92  HNF 94


>gi|302878653|ref|YP_003847217.1| ATP-dependent DNA helicase, RecQ family [Gallionella
            capsiferriformans ES-2]
 gi|302581442|gb|ADL55453.1| ATP-dependent DNA helicase, RecQ family [Gallionella
            capsiferriformans ES-2]
          Length = 1707

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 8    QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLL 66
            +  +  +D +     + L+A     +  + A  GSGKT ++V RV  LL     P   ++
Sbjct: 1081 ESLNRIVDNLKHPLQQSLVADKSDTNRLILAGPGSGKTRVIVHRVAYLLRVLRTPADGII 1140

Query: 67   CLTHTKAAAAEMSHRVLEIITAWS 90
             LT  + AA E+  R+++++   +
Sbjct: 1141 VLTFNRLAAFEVRKRLIDLVGQDA 1164


>gi|238783717|ref|ZP_04627737.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia bercovieri ATCC 43970]
 gi|238715430|gb|EEQ07422.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia bercovieri ATCC 43970]
          Length = 1148

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+AA  E+  R+ + I          +S      +       D+S+A   L+
Sbjct: 3   EEILVVTFTEAATEELRGRIRDNIHELRIACVRGVSDNPMH-KALLAEIIDLSEAAAQLL 61

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                     + TIH FC+ ++     E+ I   F     +    L  +A       
Sbjct: 62  AAERQMDEAAIYTIHGFCQRMLANNAFESGI--LFEQTLVQDELPLRRQACADFWRR 116


>gi|260773900|ref|ZP_05882815.1| DNA helicase IV [Vibrio metschnikovii CIP 69.14]
 gi|260610861|gb|EEX36065.1| DNA helicase IV [Vibrio metschnikovii CIP 69.14]
          Length = 687

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    LL +   K AA EM  
Sbjct: 203 SQQQAVLINDDHNLVLAGAGSGKTSVLTARVAYLLQSHLAQADELLLVAFGKDAANEMDQ 262

Query: 81  RVLEIITAWS 90
           R+   I   +
Sbjct: 263 RLKSKIGLAA 272


>gi|313618384|gb|EFR90412.1| ATP-dependent DNA helicase PcrA [Listeria innocua FSL S4-378]
          Length = 131

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 38/112 (33%)

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L +T T  AA EM  R+  ++   +                                 
Sbjct: 1   NILAITFTNKAAREMKSRIGNLMGGEAE-------------------------------- 28

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                  + + T H+ C  I+++         +F I D      +I+   K 
Sbjct: 29  ------SIWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 74


>gi|296451043|ref|ZP_06892785.1| probable helicase [Clostridium difficile NAP08]
 gi|296880604|ref|ZP_06904566.1| probable helicase [Clostridium difficile NAP07]
 gi|296260050|gb|EFH06903.1| probable helicase [Clostridium difficile NAP08]
 gi|296428558|gb|EFH14443.1| probable helicase [Clostridium difficile NAP07]
          Length = 742

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 42/196 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           I+  + +  + +    +  V A  G+GKT I+   V +LLL   H    +L LT+  +A 
Sbjct: 7   INYREDQIPIINYDNGTMAVPAVPGAGKTFIITNLVAKLLLEQKHKGGKILVLTYMNSAV 66

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                R+ +I+                                      ++     +V T
Sbjct: 67  NNFKGRIRKILEEHK----------------------------------IDDTNSYEVMT 92

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+    I+++ P    ++  F IAD+ Q   ++ E              E  ++AF   
Sbjct: 93  IHSLAVKIIKEKPEVVMLSEDFNIADDLQKNIILNECISRF-------RFEGGERAFRWF 145

Query: 196 LEISNDEDIETLISDI 211
           L+   DE  + +  + 
Sbjct: 146 LKEQKDERWKEITLEA 161


>gi|188534225|ref|YP_001908022.1| DNA helicase IV [Erwinia tasmaniensis Et1/99]
 gi|188029267|emb|CAO97144.1| Helicase IV [Erwinia tasmaniensis Et1/99]
          Length = 684

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
             S+     +   +  V A AGSGKT +LV R   L++   A    +L L   + AA EM
Sbjct: 198 NASQARAVVNGEDAVLVLAGAGSGKTSVLVARAGWLMMRKQASAGQVLLLAFGRKAAEEM 257

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + R+   +      +    +  +  IQ        +S+
Sbjct: 258 NERIRARLATGDIQARTFHALALHIIQQGSNKSPAISR 295


>gi|308235631|ref|ZP_07666368.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14018]
 gi|311114379|ref|YP_003985600.1| DNA helicase II [Gardnerella vaginalis ATCC 14019]
 gi|310945873|gb|ADP38577.1| DNA helicase II [Gardnerella vaginalis ATCC 14019]
          Length = 527

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73
          L++     Q  A+        + A AG+GKT  + +R+           + +L +T +  
Sbjct: 8  LLNDLDDSQRAAAMALNGPVRIVACAGAGKTRTITRRIAYACAKGEWDENRVLAVTFSVK 67

Query: 74 AAAEMSHRVLEI 85
          AA EM  R+ ++
Sbjct: 68 AAKEMQERLKKL 79


>gi|255655056|ref|ZP_05400465.1| putative helicase [Clostridium difficile QCD-23m63]
          Length = 739

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 42/196 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           I+  + +  + +    +  V A  G+GKT I+   V +LLL   H    +L LT+  +A 
Sbjct: 4   INYREDQIPIINYDNGTMAVPAVPGAGKTFIITNLVAKLLLEQKHKGGKILVLTYMNSAV 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                R+ +I+                                      ++     +V T
Sbjct: 64  NNFKGRIRKILEEHK----------------------------------IDDTNSYEVMT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+    I+++ P    ++  F IAD+ Q   ++ E              E  ++AF   
Sbjct: 90  IHSLAVKIIKEKPEVVMLSEDFNIADDLQKNIILNECISRF-------RFEGGERAFRWF 142

Query: 196 LEISNDEDIETLISDI 211
           L+   DE  + +  + 
Sbjct: 143 LKEQKDERWKEITLEA 158


>gi|313838399|gb|EFS76113.1| HRDC domain protein [Propionibacterium acnes HL086PA1]
          Length = 706

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|313827473|gb|EFS65187.1| HRDC domain protein [Propionibacterium acnes HL063PA2]
          Length = 706

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|297518772|ref|ZP_06937158.1| exonuclease V subunit beta [Escherichia coli OP50]
          Length = 1028

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 10/150 (6%)

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
             LL +T T+AA AE+  R+   I         E     + +   ++ +  D ++A   L
Sbjct: 30  EELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEID--DKAQAAQWL 87

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           +          V TIH FC+ ++     E+ +     + ++E    L  +A         
Sbjct: 88  LLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHC 145

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDI 211
                E+ +  +E       +  + L+ DI
Sbjct: 146 YPLPREIAQVVFE-----TWKGPQALLRDI 170


>gi|50842794|ref|YP_056021.1| putative DNA helicase II-like protein [Propionibacterium acnes
          KPA171202]
 gi|50840396|gb|AAT83063.1| putative DNA helicase II homolog [Propionibacterium acnes
          KPA171202]
 gi|315105911|gb|EFT77887.1| HRDC domain protein [Propionibacterium acnes HL030PA1]
          Length = 706

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|90579044|ref|ZP_01234854.1| hypothetical helicase IV [Vibrio angustum S14]
 gi|90439877|gb|EAS65058.1| hypothetical helicase IV [Vibrio angustum S14]
          Length = 693

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
             S++  A        V A AG+GKT +LV R   L+    A P  +L L   + AA EM
Sbjct: 198 NDSQREAALINQDHNLVLAGAGTGKTSVLVARAGYLIASQQAVPEDILMLAFGRKAAEEM 257

Query: 79  SHRVLEIITAWSHLS--DEILSAEITKIQGKKPN 110
           S R+ E ++    ++    + S  I  ++ +KPN
Sbjct: 258 SERMGEKVSDRVKVATFHSLGSQIIADVEKEKPN 291


>gi|315109410|gb|EFT81386.1| HRDC domain protein [Propionibacterium acnes HL030PA2]
          Length = 706

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|314914871|gb|EFS78702.1| HRDC domain protein [Propionibacterium acnes HL005PA4]
          Length = 706

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|313792367|gb|EFS40466.1| HRDC domain protein [Propionibacterium acnes HL110PA1]
          Length = 706

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|310829938|ref|YP_003962295.1| UvrD/REP helicase [Eubacterium limosum KIST612]
 gi|308741672|gb|ADO39332.1| UvrD/REP helicase [Eubacterium limosum KIST612]
          Length = 724

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 75/215 (34%), Gaps = 44/215 (20%)

Query: 19  QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76
           Q  ++Q  A    + +  + A  GSGKT +++ R+  ++ +    P ++L LT +KA A 
Sbjct: 14  QLNAQQREAVGRISGATLLLAVPGSGKTTVVICRIAYMIRMKKIPPESILTLTFSKAGAR 73

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++S R L+I                                            GL+  TI
Sbjct: 74  DLSRRYLKIFGEKG-------------------------------------AEGLRFSTI 96

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H+F  ++++           F I +   S  +I E  +    S   +N+  +      I 
Sbjct: 97  HSFTLSVIR-HYERLYHRRAFQIVENTGS--IIRELFQELFKSYPAEND--IVDIVSAIT 151

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
              N    E  I ++         +F  +    RR
Sbjct: 152 YCKNMLLSEEEIGEMKVGDVDFPKLFKAYEAYKRR 186


>gi|241204304|ref|YP_002975400.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858194|gb|ACS55861.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 972

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 90/226 (39%), Gaps = 32/226 (14%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HP 62
             ++++  +TI+    T  ++L       +  V A AGSGKT ++  +   L  A    P
Sbjct: 187 LETWKDFFDTIESKPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKASYLAKAGIRQP 246

Query: 63  STLLCLTHTKAAAAEMSHRVLEI--ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             +L L   K AA EMS RV     +   +     +    I +++G KP  ++ +     
Sbjct: 247 EEILLLAFAKNAAEEMSERVEARSGVPLVARTFHALAYDIIGEVEGSKPALANHA----- 301

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                 T     + TI    + I++      ++     +  + +  K I +     LA  
Sbjct: 302 ------TDDAAFIDTI----KQILK------DL-----VRTDPEVAKAIIKWFAHFLAET 340

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFS 226
             + + + K  +Y  +E    +D+ TL  + + +   L++  + + 
Sbjct: 341 KTEWDFKTKHDYYAHIEK---QDLRTLQGEKVKSYEELQIANWLYE 383


>gi|261251138|ref|ZP_05943712.1| DNA helicase IV [Vibrio orientalis CIP 102891]
 gi|260938011|gb|EEX93999.1| DNA helicase IV [Vibrio orientalis CIP 102891]
          Length = 688

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S++        +  + A AGSGKT +L  RV  LL ++ A  S +L L   + AA+EMS 
Sbjct: 203 SQKRAVLLNDDNNLILAGAGSGKTSVLTARVAYLLQSHLAQASDILMLAFGRDAASEMSQ 262

Query: 81  RVLEIITA 88
           R+ + I +
Sbjct: 263 RLNDKIGS 270


>gi|229817193|ref|ZP_04447475.1| hypothetical protein BIFANG_02452 [Bifidobacterium angulatum DSM
           20098]
 gi|229784982|gb|EEP21096.1| hypothetical protein BIFANG_02452 [Bifidobacterium angulatum DSM
           20098]
          Length = 537

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70
           E ++ +   +     A +      + A AG+GKT  + +R+     +     S +L +T 
Sbjct: 38  ELLEGLDDAQLAAATALE--GPVRIIAGAGAGKTRTVTRRIAHACASGQWDASRVLAVTF 95

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG------KKPNKSDMSKARHLLITI 124
           +  AAAEM  R+  +       +    SA + +++       + P    +  AR + +  
Sbjct: 96  SVKAAAEMRVRLESLGVGGQVTAATFHSAALRQLRRVWADVCEAPFPRLIEDARDITMRA 155

Query: 125 LETPG 129
           +   G
Sbjct: 156 MRRVG 160


>gi|329296503|ref|ZP_08253839.1| DNA helicase IV [Plautia stali symbiont]
          Length = 693

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           T++      S+     +   +  V A AGSGKT +LV R   LL    A P  +L L   
Sbjct: 184 TVETTPLNPSQCEAVVNGEDALLVLAGAGSGKTSVLVARAGWLLHRKLAQPEQILLLAFG 243

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + AA EM+ R+   +   +  +    +  +  I+     +S +S+
Sbjct: 244 RQAAEEMNDRIQTRLGESAIQARTFHALALHIIREGSNKQSVISR 288


>gi|190149632|ref|YP_001968157.1| helicase IV [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|190151087|ref|YP_001969612.1| helicase IV [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|189914763|gb|ACE61015.1| helicase IV [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|189916218|gb|ACE62470.1| helicase IV [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
          Length = 954

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 56/239 (23%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HP 62
            N  +   + I+    T+ ++L          V A AG+GKT ++V + L L+ + A   
Sbjct: 181 LNHRKHFFDVIESNPLTEQQRLSVIRNNDINMVLAAAGTGKTSVMVAKALDLIDSGACKS 240

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L L + + AA E+S R+ E                               +AR   +
Sbjct: 241 EDILILAYNRDAATELSERLQE-------------------------------RAREANL 269

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            +  +P    + T HA    I+++     +++  FA    E   KL +      L   + 
Sbjct: 270 DLENSPS---ISTFHALGRRIIKECGKSVHLS-KFA----EDPMKL-DRWFNKWLEDYIK 320

Query: 183 DNNEELKKAF---------------YEILEISNDEDIETLISDIISNRTALKLIFFFFS 226
           ++ + L K                  E     ND D  TL  + +     L +  + FS
Sbjct: 321 EDPDNLAKFIQLAYQPIDPFQFKTKEEYDRYVNDNDYRTLQGERVRGYQELLIANWLFS 379


>gi|289425544|ref|ZP_06427321.1| HRDC domain protein [Propionibacterium acnes SK187]
 gi|289428126|ref|ZP_06429829.1| HRDC domain protein [Propionibacterium acnes J165]
 gi|289154522|gb|EFD03210.1| HRDC domain protein [Propionibacterium acnes SK187]
 gi|289158726|gb|EFD06927.1| HRDC domain protein [Propionibacterium acnes J165]
 gi|313764141|gb|EFS35505.1| HRDC domain protein [Propionibacterium acnes HL013PA1]
 gi|313801685|gb|EFS42925.1| HRDC domain protein [Propionibacterium acnes HL110PA2]
 gi|313807177|gb|EFS45670.1| HRDC domain protein [Propionibacterium acnes HL087PA2]
 gi|313816234|gb|EFS53948.1| HRDC domain protein [Propionibacterium acnes HL059PA1]
 gi|313819371|gb|EFS57085.1| HRDC domain protein [Propionibacterium acnes HL046PA2]
 gi|313820635|gb|EFS58349.1| HRDC domain protein [Propionibacterium acnes HL036PA1]
 gi|313822560|gb|EFS60274.1| HRDC domain protein [Propionibacterium acnes HL036PA2]
 gi|313825506|gb|EFS63220.1| HRDC domain protein [Propionibacterium acnes HL063PA1]
 gi|314918014|gb|EFS81845.1| HRDC domain protein [Propionibacterium acnes HL050PA1]
 gi|314920390|gb|EFS84221.1| HRDC domain protein [Propionibacterium acnes HL050PA3]
 gi|314923616|gb|EFS87447.1| HRDC domain protein [Propionibacterium acnes HL001PA1]
 gi|314929982|gb|EFS93813.1| HRDC domain protein [Propionibacterium acnes HL067PA1]
 gi|314956482|gb|EFT00770.1| HRDC domain protein [Propionibacterium acnes HL027PA1]
 gi|314957326|gb|EFT01429.1| HRDC domain protein [Propionibacterium acnes HL002PA1]
 gi|314960473|gb|EFT04575.1| HRDC domain protein [Propionibacterium acnes HL002PA2]
 gi|314962486|gb|EFT06586.1| HRDC domain protein [Propionibacterium acnes HL082PA1]
 gi|314966454|gb|EFT10553.1| HRDC domain protein [Propionibacterium acnes HL082PA2]
 gi|314967649|gb|EFT11748.1| HRDC domain protein [Propionibacterium acnes HL037PA1]
 gi|314978132|gb|EFT22226.1| HRDC domain protein [Propionibacterium acnes HL072PA2]
 gi|315077702|gb|EFT49753.1| HRDC domain protein [Propionibacterium acnes HL053PA2]
 gi|315084660|gb|EFT56636.1| HRDC domain protein [Propionibacterium acnes HL027PA2]
 gi|315085345|gb|EFT57321.1| HRDC domain protein [Propionibacterium acnes HL002PA3]
 gi|315088595|gb|EFT60571.1| HRDC domain protein [Propionibacterium acnes HL072PA1]
 gi|315092769|gb|EFT64745.1| HRDC domain protein [Propionibacterium acnes HL060PA1]
 gi|315098842|gb|EFT70818.1| HRDC domain protein [Propionibacterium acnes HL059PA2]
 gi|315101559|gb|EFT73535.1| HRDC domain protein [Propionibacterium acnes HL046PA1]
 gi|315103763|gb|EFT75739.1| HRDC domain protein [Propionibacterium acnes HL050PA2]
 gi|327327131|gb|EGE68910.1| ATP-dependent DNA helicase [Propionibacterium acnes HL096PA3]
 gi|327327276|gb|EGE69052.1| ATP-dependent DNA helicase [Propionibacterium acnes HL103PA1]
 gi|327443756|gb|EGE90410.1| HRDC domain protein [Propionibacterium acnes HL013PA2]
 gi|327452212|gb|EGE98866.1| HRDC domain protein [Propionibacterium acnes HL087PA3]
 gi|327452689|gb|EGE99343.1| HRDC domain protein [Propionibacterium acnes HL083PA2]
 gi|327453447|gb|EGF00102.1| HRDC domain protein [Propionibacterium acnes HL092PA1]
 gi|328752845|gb|EGF66461.1| HRDC domain protein [Propionibacterium acnes HL025PA2]
 gi|328753888|gb|EGF67504.1| HRDC domain protein [Propionibacterium acnes HL087PA1]
 gi|328754856|gb|EGF68472.1| HRDC domain protein [Propionibacterium acnes HL020PA1]
          Length = 706

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|197301471|ref|ZP_03166550.1| hypothetical protein RUMLAC_00202 [Ruminococcus lactaris ATCC
           29176]
 gi|197299431|gb|EDY33952.1| hypothetical protein RUMLAC_00202 [Ruminococcus lactaris ATCC
           29176]
          Length = 758

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 35/151 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
           +     D + +  V+AN GSGKT +L+ ++L L  +    P  ++ LT T  AA E+  R
Sbjct: 17  QMTAVLDESPACVVNANVGSGKTTVLIAKILYLYQVKQIQPEEMIVLTFTNKAADEIKER 76

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++          ++ L  E    + +                           T H+   
Sbjct: 77  LI--------AKEKFLKKEKNDEEPRLDGF----------------------GTFHSVAL 106

Query: 142 AIMQQ--FPLEANITSHFAIA--DEEQSKKL 168
            ++++     +A     F +   DEE+   L
Sbjct: 107 WMLREKLEVEKAGWRKDFTVMAPDEEEDLAL 137


>gi|314924879|gb|EFS88710.1| HRDC domain protein [Propionibacterium acnes HL036PA3]
          Length = 706

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+    +     P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAVTGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|261368777|ref|ZP_05981660.1| putative ATP-dependent DNA helicase PcrA [Subdoligranulum
          variabile DSM 15176]
 gi|282569133|gb|EFB74668.1| putative ATP-dependent DNA helicase PcrA [Subdoligranulum
          variabile DSM 15176]
          Length = 435

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 7  FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
          FQEH     + S    ++   +       + A  GSGKT +LV R+  ++      P ++
Sbjct: 7  FQEH-----MASFNDQQRAAVTAVDGPVLLLAVPGSGKTTVLVTRLGYMVQCRGIPPESI 61

Query: 66 LCLTHTKAAAAEMSHRVLEIITA 88
          L +T+T AA  EM  R      A
Sbjct: 62 LTMTYTVAATREMRTRFAARFGA 84


>gi|261364030|ref|ZP_05976913.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria mucosa ATCC 25996]
 gi|288568060|gb|EFC89620.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria mucosa ATCC 25996]
          Length = 1322

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 23   EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81
            ++ + +    +  V A  GSGKT ++V R   LL   + +P++++ LT    AA E+  R
Sbjct: 1103 QKAVVTGKQENRLVLAGPGSGKTRVIVHRTAYLLKAEHVNPASVIILTFNCLAAQEIKRR 1162

Query: 82   VLEIITAWSHL 92
            + E++ + +  
Sbjct: 1163 LFELVGSLAAA 1173


>gi|59712071|ref|YP_204847.1| superfamily I DNA/RNA helicase [Vibrio fischeri ES114]
 gi|59480172|gb|AAW85959.1| superfamily I DNA and RNA helicase [Vibrio fischeri ES114]
          Length = 465

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           +Q   ++++    T  +++       +  + A AG+GKT +++ +   L+ +  A P  +
Sbjct: 178 YQTFFDSVESNPLTNRQRIACVTDNDNNLLLAGAGTGKTSVMIGKAGYLVNSGKASPKQI 237

Query: 66  LCLTHTKAAAAEMSHRVLEIIT---AWSHLSDEILSAEITKIQGKKPNKSDMS 115
           L L + + AA EM+ R+ E +      +     +    I++++GK P+ S + 
Sbjct: 238 LMLAYGRIAAQEMNERIKEKLGFDDVKASTFHSLGVKIISEVEGKAPSLSKLE 290


>gi|126698622|ref|YP_001087519.1| putative helicase [Clostridium difficile 630]
 gi|255100074|ref|ZP_05329051.1| putative helicase [Clostridium difficile QCD-63q42]
 gi|255305964|ref|ZP_05350136.1| putative helicase [Clostridium difficile ATCC 43255]
 gi|115250059|emb|CAJ67879.1| putative helicase, superfamily 1, UvrD-family [Clostridium
           difficile]
          Length = 739

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 42/196 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           I+  + +  + +    +  V A  G+GKT I+   V +LLL   H    +L LT+  +A 
Sbjct: 4   INYREDQIPIINYDNGTMAVPAVPGAGKTFIITNLVAKLLLEQKHKGGKILILTYMNSAV 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                R+ +I+                                      ++     +V T
Sbjct: 64  NNFKGRIRKILEE----------------------------------NKIDDTNSYEVMT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+    I+++ P    ++  F IAD+ Q   ++ E              E  ++AF   
Sbjct: 90  IHSLAVKIIKEKPEVVMLSEDFNIADDLQKSIILNECISRF-------RFEGGERAFRWF 142

Query: 196 LEISNDEDIETLISDI 211
           L+   DE  + +  + 
Sbjct: 143 LKEQKDERWKEITLEA 158


>gi|328541560|ref|YP_004301670.1| UvrD-like helicase IV [Polymorphum gilvum SL003B-26A1]
 gi|326415760|gb|ADZ72822.1| UvrD-like helicase IV [Polymorphum gilvum SL003B-26A1]
          Length = 913

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 9/153 (5%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HP 62
            + ++   + +D  S +  ++        +  + A+AGSGK+  +V +V  +L      P
Sbjct: 189 LSRYRSFFDNLDGRSLSDQQREACIRLEDNNLLVASAGSGKSATMVGKVAYVLDKQLYRP 248

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L L   K+AA E+  R+   +       +           G+   +    +   L  
Sbjct: 249 EEILVLAFNKSAADELKERISRQLA--VDPGNSECKVTTFHALGRGIIEEVEGRPPQLAD 306

Query: 123 TILETPGGLKV--QTIHAFCEAIMQQFPLEANI 153
            +    G  K+  Q I      +++     A++
Sbjct: 307 WVEHPAGEAKIIEQIID----DLLRSDAEFADL 335


>gi|156934552|ref|YP_001438468.1| DNA helicase IV [Cronobacter sakazakii ATCC BAA-894]
 gi|156532806|gb|ABU77632.1| hypothetical protein ESA_02386 [Cronobacter sakazakii ATCC BAA-894]
          Length = 684

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           + +    I+      S+     +   S  V A AGSGKT +LV R   L+    A    +
Sbjct: 185 YADFFSQIESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLIERGEATAEQI 244

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWS 90
           L L   + AA EM  R+   +   +
Sbjct: 245 LLLAFGRQAAKEMEERLQARLHTDA 269


>gi|294635655|ref|ZP_06714129.1| helicase IV [Edwardsiella tarda ATCC 23685]
 gi|291090985|gb|EFE23546.1| helicase IV [Edwardsiella tarda ATCC 23685]
          Length = 694

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
             S+ L   +   +  V A AGSGKT +L+ RV  LL    A    +L L   + AA EM
Sbjct: 208 NPSQALAVVNGEANVLVLAGAGSGKTSVLLARVAWLLQRGLAEGPQILLLAFGRRAAQEM 267

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + R+       S  +    +  +  ++        +S+
Sbjct: 268 AQRLPACPGGDSVAAKTFHALALQIVEQAGRKPVRLSR 305


>gi|328761480|gb|EGF75004.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
          HL099PA1]
          Length = 356

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+          P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAATGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|323489207|ref|ZP_08094439.1| UvrD/REP helicase [Planococcus donghaensis MPA1U2]
 gi|323397094|gb|EGA89908.1| UvrD/REP helicase [Planococcus donghaensis MPA1U2]
          Length = 708

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 65/218 (29%), Gaps = 67/218 (30%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            +   K ++           + A  GSGKT  ++ R+  L+      PS +  +T +KA+
Sbjct: 13  GVQLNKIQRKAVERTEGPLLLLACPGSGKTTTMIMRIGYLIEEKGVSPSRIKAITFSKAS 72

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A +M  R                                                 +   
Sbjct: 73  ANDMLER---------------------------------------YKRFFPLLQPIDFS 93

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+    I + +       S + + +  ++  L +   K  L  +    N+E       
Sbjct: 94  TIHSLAFQITRDYFS----GSRYIMIEGNEANGLHK---KKLLREMYRTENDEPI----- 141

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232
                 D+ +E LIS           I +  + +  RK
Sbjct: 142 -----TDDQLEELIS----------FISYVKNKMLPRK 164


>gi|150017986|ref|YP_001310240.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149904451|gb|ABR35284.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 691

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 83/215 (38%), Gaps = 24/215 (11%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67
            + + ++ +++ + E +L  D + +  V+AN GSGKT +L+ +++ L    N     ++ 
Sbjct: 2   NYEKELERLNEYQREAVL--DESDACVVNANVGSGKTTVLISKIVYLHYAKNISYKDMIV 59

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR-HLLITILE 126
           LT T  AA E+  R++    +      E      +           + K R      ++E
Sbjct: 60  LTFTNKAANEIKERLMVSDESIKSEELEGFGTFHSVALNLLKEVLPIEKIRYEKDFLVIE 119

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
               L +         I+Q+   +                +L +  +++ +     +   
Sbjct: 120 PDEELDI------ALQIIQEEKFKIKY-----------KNRLKKRLEQAMVIEKEEEKIS 162

Query: 187 ELKKAFYEILEISNDEDIETL---ISDIISNRTAL 218
                 ++++E+  +E I+      SDI+ N   L
Sbjct: 163 PYDDDIFKLIELLKEEKIKQNKMSFSDILQNANLL 197


>gi|206559582|ref|YP_002230343.1| putative helicase [Burkholderia cenocepacia J2315]
 gi|198035620|emb|CAR51507.1| putative helicase [Burkholderia cenocepacia J2315]
          Length = 934

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 18/130 (13%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
           + T  +   A     +  + A AGSGKT  +V +V   L+     P  +LCL     AAA
Sbjct: 177 ALTDEQARAAITFEENTLLIAAAGSGKTSTVVGKVAYALVKGIVRPEEILCLAFNGKAAA 236

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E++ R    + A                     + +  ++ R L+ + +         T 
Sbjct: 237 EIAVRTNARLRAMIA-------------DVCPIDPAIKNRVRVLVDSGVRIESR----TF 279

Query: 137 HAFCEAIMQQ 146
           H+    I++Q
Sbjct: 280 HSLGRKIVEQ 289


>gi|126733715|ref|ZP_01749462.1| Possible DNA helicase [Roseobacter sp. CCS2]
 gi|126716581|gb|EBA13445.1| Possible DNA helicase [Roseobacter sp. CCS2]
          Length = 1873

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 13   TIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
             +D++     ++++     + +  V A  GSGKT +LV R+  LL +     + +L LT+
Sbjct: 1094 IVDVLENAVHQKIVTDAREQTNVLVLAGPGSGKTRVLVHRIAYLLRIKREDANGILVLTY 1153

Query: 71   TKAAAAEMSHRVLEIITA 88
             + AA E+  R+  ++  
Sbjct: 1154 NRHAATEVRARLRALVGD 1171


>gi|266625534|ref|ZP_06118469.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
 gi|288862559|gb|EFC94857.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
          Length = 178

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 39/149 (26%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHR 81
           ++   ++   +  VSAN GSGKT +L  ++L L  + +     ++ LT T  AAAE+  R
Sbjct: 14  QREAVTNENTACLVSANVGSGKTTVLTAKILYLHEVKHVSYRNIMVLTFTNRAAAEIRER 73

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++         +D  ++ E T+                               T H    
Sbjct: 74  LVS--------ADPAVTPEETE----------------------------NFGTFHGVAL 97

Query: 142 AIM-QQFPLE-ANITSHFAIADEEQSKKL 168
            ++ ++ P+E    T  F + + ++  +L
Sbjct: 98  GLLKKKLPVENLGYTKDFMVMEPDEELEL 126


>gi|229829221|ref|ZP_04455290.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles DSM
           14600]
 gi|229792384|gb|EEP28498.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles DSM
           14600]
          Length = 640

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 43/181 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSH 80
            ++   S         A  GSGKT ++++RV RL+     P   +L +T T+ AA EM +
Sbjct: 10  KQEEAVSFFEGVCLTIAGPGSGKTSVIIRRVARLIEERKIPAEQILVITFTREAAMEMQN 69

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R L ++                                                T H+  
Sbjct: 70  RFLSVLGTEGIPVVF--------------------------------------GTFHSVF 91

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             I+++   E   ++  ++  EE+   L  EA             E   K    + +   
Sbjct: 92  FRILRE---ERGYSAD-SLLSEEKRFLLAMEALNQMGIRADRRKTETFLKRLDGLSQRET 147

Query: 201 D 201
           D
Sbjct: 148 D 148


>gi|218676239|ref|YP_002395058.1| DNA helicase IV [Vibrio splendidus LGP32]
 gi|218324507|emb|CAV25975.1| Helicase IV [Vibrio splendidus LGP32]
          Length = 691

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           + A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQYAVLMNDDHNLILAGAGSGKTSVLTARVAYLLQSHQAQAEELLLLAFGREAAEEMKQ 262

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 263 RLNSKIGISAE 273


>gi|86144328|ref|ZP_01062660.1| helicase IV [Vibrio sp. MED222]
 gi|85837227|gb|EAQ55339.1| helicase IV [Vibrio sp. MED222]
          Length = 691

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           + A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQYAVLMNDDHNLILAGAGSGKTSVLTARVAYLLQSHQAQAEELLLLAFGREAAEEMKQ 262

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 263 RLNSKIGISAE 273


>gi|227356887|ref|ZP_03841266.1| helicase IV [Proteus mirabilis ATCC 29906]
 gi|227162957|gb|EEI47902.1| helicase IV [Proteus mirabilis ATCC 29906]
          Length = 683

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E   TI+     +S+     +   +  V A AGSGKT +LV R   LL    A    +L 
Sbjct: 187 EFFTTIETSPLNESQCKAVINGEDNILVLAGAGSGKTSVLVARAGWLLRRKLATSEQILL 246

Query: 68  LTHTKAAAAEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           L   + AA EM+ R+ E + A      +  L+  I+     K       + +  K R LL
Sbjct: 247 LAFGRKAAEEMNQRLSERLNADITAKTFHALALFIIQQSTKKQPKISELEINSEKRRTLL 306

Query: 122 IT 123
           +T
Sbjct: 307 LT 308


>gi|291518979|emb|CBK74200.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
           16/4]
          Length = 770

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66
           +++       + T  E+++ +   + ++V+A  G+GKT+ L++++  ++    A P  +L
Sbjct: 155 EKYGSIFRAFADTTQEEIIEAPLNQMSFVNAGPGTGKTYTLMRKITHMVENLEADPEGIL 214

Query: 67  CLTHTKAAAAEMSHRVLE 84
            L  T AA  E+  R+ +
Sbjct: 215 VLCFTNAAVNEIKARIKK 232


>gi|15837025|ref|NP_297713.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa 9a5c]
 gi|9105263|gb|AAF83233.1|AE003893_10 exodeoxyribonuclease V beta chain [Xylella fastidiosa 9a5c]
          Length = 1212

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 47/179 (26%)

Query: 46  HILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI------LSA 99
             LV R++  +        +L +T T+AA  E+  R+ E +   + L  +       L +
Sbjct: 2   ATLVTRLV--VERGWRIGHILAVTFTEAATQELRTRIRERLILAARLVPQAAELPVPLPS 59

Query: 100 EITKIQGKKPNKSDMSKA----------------------RHLLITILETPGGL------ 131
              +I    P+  D  +                       R  L    ETP  L      
Sbjct: 60  AQPQIPHPTPHPQDAPRITPGVANSTSPEPPDVALTLQILRTHLAATDETPHALHSRLQQ 119

Query: 132 --------KVQTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKLIEEAKKSTLAS 179
                    + TIH FC  ++++  L      I      +D +   +L  +  +  +A 
Sbjct: 120 AADEIDLAAIFTIHGFCTRVLREHALHTGQSFIPPTLLASDRDLLHELAADIWRQEIAD 178


>gi|327393379|dbj|BAK10801.1| helicase IV HelD [Pantoea ananatis AJ13355]
          Length = 677

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           +Q+   T++      S+     +   +  V A AGSGKT +LV R   LL    A    +
Sbjct: 178 YQDFFATVESTPLNGSQAEAVVNGEDAVLVLAGAGSGKTSVLVARAGWLLQRRLAGADQI 237

Query: 66  LCLTHTKAAAAEMSHRVLEIITA-------WSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           L L   + AA EM+ R+   + A       +  L+  I+     K       +SD +  R
Sbjct: 238 LLLAFGRHAAEEMNDRIQSRLQATDMQARTFHSLALHIIREGSNKQPVISKLESDAAARR 297

Query: 119 HLLITI 124
            LLI I
Sbjct: 298 ALLIDI 303


>gi|315181667|gb|ADT88580.1| helicase IV [Vibrio furnissii NCTC 11218]
          Length = 687

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A+   +L +   + A+ EM  
Sbjct: 203 SQQQAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHLANAEDILLVAFGRDASKEMEQ 262

Query: 81  RVLEIITAWSH 91
           R+ + I   + 
Sbjct: 263 RLSDKIGLAAE 273


>gi|291616951|ref|YP_003519693.1| HelD [Pantoea ananatis LMG 20103]
 gi|291151981|gb|ADD76565.1| HelD [Pantoea ananatis LMG 20103]
          Length = 684

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           +Q+   T++      S+     +   +  V A AGSGKT +LV R   LL    A    +
Sbjct: 185 YQDFFATVESTPLNGSQAEAVVNGEDAVLVLAGAGSGKTSVLVARAGWLLQRRLAGADQI 244

Query: 66  LCLTHTKAAAAEMSHRVLEIITA-------WSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           L L   + AA EM+ R+   + A       +  L+  I+     K       +SD +  R
Sbjct: 245 LLLAFGRHAAEEMNDRIQSRLQATDMQARTFHSLALHIIREGSNKQPVISKLESDAAARR 304

Query: 119 HLLITI 124
            LLI I
Sbjct: 305 ALLIDI 310


>gi|197284679|ref|YP_002150551.1| DNA helicase IV [Proteus mirabilis HI4320]
 gi|194682166|emb|CAR41809.1| putative helicase IV [Proteus mirabilis HI4320]
          Length = 683

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           E   TI+     +S+     +   +  V A AGSGKT +LV R   LL    A    +L 
Sbjct: 187 EFFTTIETSPLNESQCKAVINGEDNILVLAGAGSGKTSVLVARAGWLLRRKLATSEQILL 246

Query: 68  LTHTKAAAAEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           L   + AA EM+ R+ E + A      +  L+  I+     K       + +  K R LL
Sbjct: 247 LAFGRKAAEEMNQRLSERLNADITAKTFHALALFIIQQSTKKQPKISELEINSEKRRTLL 306

Query: 122 IT 123
           +T
Sbjct: 307 LT 308


>gi|84390463|ref|ZP_00991474.1| helicase IV [Vibrio splendidus 12B01]
 gi|84376723|gb|EAP93599.1| helicase IV [Vibrio splendidus 12B01]
          Length = 691

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           + A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQYAVLMNDDHNLILAGAGSGKTSVLTARVAYLLQSHQAQAEELLLLAFGREAAEEMKQ 262

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 263 RLNSKIGLSAE 273


>gi|299143903|ref|ZP_07036983.1| DNA helicase II [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518388|gb|EFI42127.1| DNA helicase II [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 605

 Score = 71.4 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 64/216 (29%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
              A V A  G+GKT +L+ R ++L+    +   +L +T +K+A+ +M  R  ++   + 
Sbjct: 15  DGPALVLAVPGAGKTTMLLYRTMQLIQNGINSDRILTITFSKSASLDMKSRFKKLFPNFK 74

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                   L   TIHAFC  I++++   
Sbjct: 75  R--------------------------------------ELNFSTIHAFCYGIIREYSKL 96

Query: 151 ANITSHFAIADEEQSKKLIEE---AKKSTLASIMLDNN-----EELKKAFYEILEISNDE 202
                        ++ +LIEE   +K   L+ I  + N     EE  +A    +    + 
Sbjct: 97  RG-----------KTYRLIEENSISKFELLSKIYYEINKKTVTEENLEAIINKISYFKN- 144

Query: 203 DIETLISDIISNRTA---LKLIFFFFSYLWRRKIIE 235
              TL++   +N      +KL  F+  Y  +  +I+
Sbjct: 145 ---TLLTPNETNTDIPNFVKLYNFYEQYKLKNGLID 177


>gi|255262002|ref|ZP_05341344.1| hypothetical protein TR2A62_3590 [Thalassiobium sp. R2A62]
 gi|255104337|gb|EET47011.1| hypothetical protein TR2A62_3590 [Thalassiobium sp. R2A62]
          Length = 789

 Score = 71.4 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 18  SQTKSEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +   + QL   + + +A   V+A  GSGKTH   +RV+ L+     P+ +  +T T+ AA
Sbjct: 217 NVADASQLAVIERSATARQIVTAGPGSGKTHTATERVINLVQQGLSPARIRLITFTRVAA 276

Query: 76  AEMSHRVLEIITA 88
            E+  R+   +  
Sbjct: 277 EEVGRRISAALGE 289


>gi|51894104|ref|YP_076795.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857793|dbj|BAD41951.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 649

 Score = 71.4 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 43/168 (25%)

Query: 40  AGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
            G+GKT +L      L+    H P  +L +T+T +A     +R+ + + A          
Sbjct: 2   PGAGKTTVLAYLAADLIAEGRHLPGRILIVTYTNSAVGNFKNRIGQFLEARG-------- 53

Query: 99  AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA 158
                          + +A            G +V+TIH+    I+++ P        FA
Sbjct: 54  ---------------LPRA------------GFEVRTIHSLAVQIVRERPEAIGWPDTFA 86

Query: 159 IADEEQSKKLIE-------EAKKSTLASIMLDNNEELKKAFYEILEIS 199
           + DE + + L+         A + T  +++ ++     +A     E +
Sbjct: 87  VLDEVRRRTLVNALTAGWIAAHRDTWEALVREDVRNRDQALARWAEHT 134


>gi|325927577|ref|ZP_08188809.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas perforans 91-118]
 gi|325542042|gb|EGD13552.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas perforans 91-118]
          Length = 574

 Score = 71.4 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 66/230 (28%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA---------------AAA-- 76
            + A+AG+GKT  L     RL++        +L +T T+A               AA+  
Sbjct: 20  LIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAATQELRRRIRERLVLAASLV 79

Query: 77  -EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA------------------ 117
            E    +   ++A +  S        +   G     +D++ A                  
Sbjct: 80  PEAPSPLAGAVSAATESSAIQSPDAPSASAGADLGATDLADAPSQPGPLLHEAPDVLLTR 139

Query: 118 -----------------RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN-------- 152
                            R  L   +E      V TIH FC   +++  LE+         
Sbjct: 140 AILATHLGGGSETPVALRRRLQQAVEEIDLAAVFTIHGFCARALREHALESGQAFAAPEL 199

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLAS----IMLDNNEELKKAFYEILEI 198
           + +   +  E  +    + A  + +A     +     E L      ++  
Sbjct: 200 LANDRQLLGEVAADLWRQRAADAVMAEDLIALWSGGPEALASDLRALVRH 249


>gi|89068508|ref|ZP_01155905.1| Possible DNA helicase [Oceanicola granulosus HTCC2516]
 gi|89045927|gb|EAR51987.1| Possible DNA helicase [Oceanicola granulosus HTCC2516]
          Length = 298

 Score = 71.4 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 12  ETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
             ++ +     ++++A D    +  V A  GSGKT +LV R+  L+ +      ++L L+
Sbjct: 216 NVVEALGNPVQQKIVADDRDATNVLVLAGPGSGKTRVLVHRIACLIRVRREDSRSILVLS 275

Query: 70  HTKAAAAEMSHRVLEIITAWSHL 92
           + + AA E+  R+  ++ A   +
Sbjct: 276 YNRHAAVEIRARLRHLVGARHSV 298


>gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
 gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
          Length = 889

 Score = 71.4 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 40/165 (24%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            + +Q + +       V A  G GKT IL  R++    A    + +LCLT T  A+  M 
Sbjct: 4   DEKQQEVIAAAGGYHVVLAPPGCGKTEILAARIVHAYHAGTAFADMLCLTFTNRASRGMR 63

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  +                                        E    L V  +H F
Sbjct: 64  ERISTMTEC-------------------------------------EGIEQLFVGNVHRF 86

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           C   +    +   I    ++ DEE +  +I +  +    SI+ DN
Sbjct: 87  CSRFLFDNGI---IPESASVIDEEDTISIIADYLEHEELSILSDN 128


>gi|161789260|ref|YP_001595635.1| UvrD-like helicase IV [Vibrio sp. 23023]
 gi|161761385|gb|ABX77031.1| UvrD-like helicase IV [Vibrio sp. 23023]
          Length = 861

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 56/227 (24%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           +    + ++    T  +++       +  + A AG+GKT ++V R   L+ +  A  S +
Sbjct: 82  YASFFDNVESNPLTDKQRIACVTDNDNNLLLAGAGTGKTSVMVGRTGYLVNSGQARSSDI 141

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L L + + AA EM  R+ E +                                       
Sbjct: 142 LMLAYGRVAAQEMDERIKEKLG-------------------------------------- 163

Query: 126 ETPGGLKVQTIHAFCEAIMQ----QFPLEANITSHFAI-----ADEEQSKKLIEEAKKST 176
                +K  T H+    I+     + P  + +     +      DE ++  + +   K+ 
Sbjct: 164 --FDDVKASTFHSLGVKIISAVEGKAPSLSKLEDDPQVKSKWMHDEIET-LMRDSRYKAA 220

Query: 177 LAS-----IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
           L         +D N    ++    L+  ND DI ++  D + +   L
Sbjct: 221 LLDYFSSYYFVDKNPWDFESQGAYLKYLNDNDIRSMKGDKVKSYGEL 267


>gi|308186304|ref|YP_003930435.1| DNA helicase IV [Pantoea vagans C9-1]
 gi|308056814|gb|ADO08986.1| putative DNA helicase IV [Pantoea vagans C9-1]
          Length = 684

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           +Q    +++     +S+     +   S  V A AGSGKT +LV R   L+    A    +
Sbjct: 185 YQSFFASVESTPLNQSQCEAVVNGEDSLLVLAGAGSGKTSVLVARAGWLMERRLASADQI 244

Query: 66  LCLTHTKAAAAEMSHRVLEIITA-------WSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           L L   + AA EM+ R+   ++A       +  L+  I+     K       +SD    R
Sbjct: 245 LLLAFGRQAAEEMNARIQSRLSAGDIQARTFHSLALHIIREGSNKQPVISKLESDADARR 304

Query: 119 HLLIT 123
            LL+ 
Sbjct: 305 TLLLR 309


>gi|254974589|ref|ZP_05271061.1| putative helicase [Clostridium difficile QCD-66c26]
 gi|255091980|ref|ZP_05321458.1| putative helicase [Clostridium difficile CIP 107932]
 gi|255313714|ref|ZP_05355297.1| putative helicase [Clostridium difficile QCD-76w55]
 gi|255516396|ref|ZP_05384072.1| putative helicase [Clostridium difficile QCD-97b34]
 gi|255649495|ref|ZP_05396397.1| putative helicase [Clostridium difficile QCD-37x79]
 gi|260682662|ref|YP_003213947.1| putative helicase [Clostridium difficile CD196]
 gi|260686261|ref|YP_003217394.1| putative helicase [Clostridium difficile R20291]
 gi|306519629|ref|ZP_07405976.1| putative helicase [Clostridium difficile QCD-32g58]
 gi|260208825|emb|CBA61741.1| putative helicase [Clostridium difficile CD196]
 gi|260212277|emb|CBE03024.1| putative helicase [Clostridium difficile R20291]
          Length = 739

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 42/192 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           I+  + +  + +    +  V A  G+GKT I+   V +LLL   H    +L LT+  +A 
Sbjct: 4   INYREDQIPIINYDNGTMAVPAVPGAGKTFIITNLVAKLLLEQKHKGGKILILTYMNSAV 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                R+ +I+                                      ++     +V T
Sbjct: 64  NNFKGRIRKILEE----------------------------------NKIDDTNSYEVMT 89

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+    I+++ P    ++  F IAD+ Q   ++ E              E  ++AF   
Sbjct: 90  IHSLAVKIIKEKPEVVMLSEDFNIADDLQKSIILNECISRF-------RFEGGERAFRWF 142

Query: 196 LEISNDEDIETL 207
           L+   DE  + +
Sbjct: 143 LKEQKDERWKEI 154


>gi|294787441|ref|ZP_06752694.1| putative ATP-dependent DNA helicase (UvrD/REP) [Parascardovia
           denticolens F0305]
 gi|294484797|gb|EFG32432.1| putative ATP-dependent DNA helicase (UvrD/REP) [Parascardovia
           denticolens F0305]
          Length = 499

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLC 67
             ++ +  +  ++ +  +A +      + A AG+GKT  +++R+     + A      L 
Sbjct: 8   SMNDILSGLDPSQRQAAMAVE--GPVRIIAGAGAGKTRTIMRRIAYACRSGAWREERALA 65

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T +  AA EM  R+ + +      +    SA + +++    + SD          + + 
Sbjct: 66  VTFSVKAAGEMQERLRK-LGIQGVQAATFHSAALGQLRQAWGDLSDAP-----FPQVSDN 119

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
              L           +++         S F   D    +  I+ 
Sbjct: 120 LRDL-----------VIRSMAKVTG-ESDFQDIDISDVQAEIDR 151


>gi|325298300|ref|YP_004258217.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
 gi|324317853|gb|ADY35744.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
          Length = 871

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K ++        +  V ++AGSGKT  +V +V  L  +    P  +L +++T  AAAE+
Sbjct: 159 DKQQRRSIVSEEDNCLVVSSAGSGKTSSIVGKVKYLTEIKGIAPERILLISYTNKAAAEL 218

Query: 79  SHR 81
           + R
Sbjct: 219 TER 221


>gi|257879068|ref|ZP_05658721.1| UvrD/REP helicase [Enterococcus faecium 1,230,933]
 gi|257813296|gb|EEV42054.1| UvrD/REP helicase [Enterococcus faecium 1,230,933]
          Length = 728

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 47/162 (29%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           +SF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 61  SSFFKMMEKRSYNRFNQEQKAAITYDMKKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 121 ERILMITFTRNAANELKKRV---------------------------------------D 141

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFA 158
              +    + + T H+        I ++FP  A   I   F+
Sbjct: 142 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFS 183


>gi|89893428|ref|YP_516915.1| hypothetical protein DSY0682 [Desulfitobacterium hafniense Y51]
 gi|89332876|dbj|BAE82471.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1600

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 41/132 (31%)

Query: 16   LISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72
            L  +    QL   +   S    V+A  GSGKT ILV ++  LLL  +     LL +T ++
Sbjct: 1043 LFGELSPTQLKIINDRESQHIIVAAGPGSGKTRILVHKLASLLLMEDVKHEQLLMVTFSR 1102

Query: 73   AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA+ E   R+L +I   ++  +                                      
Sbjct: 1103 AASNEFKKRLLNLIGNAANYVE-------------------------------------- 1124

Query: 133  VQTIHAFCEAIM 144
            ++T H++C  ++
Sbjct: 1125 IKTFHSYCFDLL 1136


>gi|260769128|ref|ZP_05878061.1| DNA helicase IV [Vibrio furnissii CIP 102972]
 gi|260614466|gb|EEX39652.1| DNA helicase IV [Vibrio furnissii CIP 102972]
          Length = 687

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A+   +L +   + A+ EM  
Sbjct: 203 SQQQAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHLANAEDILLVAFGRDASKEMEQ 262

Query: 81  RVLEIITAWSH 91
           R+ + I   + 
Sbjct: 263 RLSDKIGLAAE 273


>gi|261206750|ref|ZP_05921441.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|289566432|ref|ZP_06446858.1| UvrD/REP helicase [Enterococcus faecium D344SRF]
 gi|260078880|gb|EEW66580.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|289161753|gb|EFD09627.1| UvrD/REP helicase [Enterococcus faecium D344SRF]
          Length = 728

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 47/162 (29%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           +SF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 61  SSFFKMMEKRSYNRFNQEQKAAITYDMKKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 121 ERILMITFTRNAANELKKRV---------------------------------------D 141

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFA 158
              +    + + T H+        I ++FP  A   I   F+
Sbjct: 142 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFS 183


>gi|330995858|ref|ZP_08319754.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329574389|gb|EGG55960.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 871

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K ++        +  V ++AGSGKT  +V +V  L  +    P  +L +++T  AAAE+
Sbjct: 159 DKQQRRSIVSEEDNCLVVSSAGSGKTSSIVGKVKYLTEIKGIAPERILLISYTNKAAAEL 218

Query: 79  SHR 81
           + R
Sbjct: 219 TER 221


>gi|254361371|ref|ZP_04977513.1| possible helicase [Mannheimia haemolytica PHL213]
 gi|153092872|gb|EDN73909.1| possible helicase [Mannheimia haemolytica PHL213]
          Length = 926

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 56/239 (23%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HP 62
            N  +   + I+    T+ ++L          V A AG+GKT ++V + L L+ + A   
Sbjct: 181 LNHRKHFFDVIESNPLTEQQRLSVIRNNDINMVLAAAGTGKTSVMVAKALDLIDSGACKS 240

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L L + + AA E+S R+ E                               +AR   +
Sbjct: 241 EDILILAYNRDAATELSERLQE-------------------------------RAREANL 269

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
            +  +P    + T HA    I+++     +++  FA    E   KL +      L   + 
Sbjct: 270 DLENSPS---ISTFHALGRRIIKECGKSVHLS-KFA----EDPMKL-DRWFNKWLEDYIK 320

Query: 183 DNNEELKKAFY---------------EILEISNDEDIETLISDIISNRTALKLIFFFFS 226
           ++ + L K                  E     ND D  TL  + +     L +  + FS
Sbjct: 321 EDPDNLAKFIQLAYQPIDPFQFKTKDEYDRYVNDNDYRTLQGERVRGYQELLIANWLFS 379


>gi|69244425|ref|ZP_00602841.1| UvrD/REP helicase [Enterococcus faecium DO]
 gi|257881693|ref|ZP_05661346.1| ATP-dependent DNA helicase [Enterococcus faecium 1,231,502]
 gi|257886324|ref|ZP_05665977.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
 gi|257890922|ref|ZP_05670575.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|258615295|ref|ZP_05713065.1| ATP-dependent DNA helicase [Enterococcus faecium DO]
 gi|260558592|ref|ZP_05830788.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|293559536|ref|ZP_06676071.1| ATP-dependent DNA helicase [Enterococcus faecium E1162]
 gi|294619537|ref|ZP_06698974.1| ATP-dependent DNA helicase [Enterococcus faecium E1679]
 gi|294623332|ref|ZP_06702193.1| ATP-dependent DNA helicase [Enterococcus faecium U0317]
 gi|314939637|ref|ZP_07846862.1| UvrD/REP helicase [Enterococcus faecium TX0133a04]
 gi|314943996|ref|ZP_07850697.1| UvrD/REP helicase [Enterococcus faecium TX0133C]
 gi|314948596|ref|ZP_07851972.1| UvrD/REP helicase [Enterococcus faecium TX0082]
 gi|314953882|ref|ZP_07856745.1| UvrD/REP helicase [Enterococcus faecium TX0133A]
 gi|314993525|ref|ZP_07858881.1| UvrD/REP helicase [Enterococcus faecium TX0133B]
 gi|314995546|ref|ZP_07860643.1| UvrD/REP helicase [Enterococcus faecium TX0133a01]
 gi|68196366|gb|EAN10794.1| UvrD/REP helicase [Enterococcus faecium DO]
 gi|257817351|gb|EEV44679.1| ATP-dependent DNA helicase [Enterococcus faecium 1,231,502]
 gi|257822180|gb|EEV49310.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
 gi|257827282|gb|EEV53908.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|260075766|gb|EEW64072.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|291594228|gb|EFF25665.1| ATP-dependent DNA helicase [Enterococcus faecium E1679]
 gi|291597267|gb|EFF28457.1| ATP-dependent DNA helicase [Enterococcus faecium U0317]
 gi|291606488|gb|EFF35887.1| ATP-dependent DNA helicase [Enterococcus faecium E1162]
 gi|313590240|gb|EFR69085.1| UvrD/REP helicase [Enterococcus faecium TX0133a01]
 gi|313591962|gb|EFR70807.1| UvrD/REP helicase [Enterococcus faecium TX0133B]
 gi|313594217|gb|EFR73062.1| UvrD/REP helicase [Enterococcus faecium TX0133A]
 gi|313597420|gb|EFR76265.1| UvrD/REP helicase [Enterococcus faecium TX0133C]
 gi|313641046|gb|EFS05626.1| UvrD/REP helicase [Enterococcus faecium TX0133a04]
 gi|313644973|gb|EFS09553.1| UvrD/REP helicase [Enterococcus faecium TX0082]
          Length = 728

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 47/162 (29%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           +SF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 61  SSFFKMMEKRSYNRFNQEQKAAITYDMKKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 121 ERILMITFTRNAANELKKRV---------------------------------------D 141

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFA 158
              +    + + T H+        I ++FP  A   I   F+
Sbjct: 142 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFS 183


>gi|314983232|gb|EFT27324.1| HRDC domain protein [Propionibacterium acnes HL110PA3]
 gi|315090106|gb|EFT62082.1| HRDC domain protein [Propionibacterium acnes HL110PA4]
          Length = 706

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+          P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAATGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|148976735|ref|ZP_01813407.1| DNA helicase IV [Vibrionales bacterium SWAT-3]
 gi|145963848|gb|EDK29107.1| DNA helicase IV [Vibrionales bacterium SWAT-3]
          Length = 691

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           + A AGSGKT +L  RV  LL ++ A    LL L   + AA EM  
Sbjct: 203 SQQYAVLMNDDHNLILAGAGSGKTSVLTARVAYLLQSHQAQAEELLLLAFGREAAEEMKQ 262

Query: 81  RVLEIITAWSH 91
           R+   I   + 
Sbjct: 263 RLDSKIGLSAE 273


>gi|293570130|ref|ZP_06681209.1| ATP-dependent DNA helicase [Enterococcus faecium E1071]
 gi|291587329|gb|EFF19214.1| ATP-dependent DNA helicase [Enterococcus faecium E1071]
          Length = 728

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 47/162 (29%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           +SF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 61  SSFFKMMEKRSYNRFNQEQKAAITYDMKKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 121 ERILMITFTRNAANELKKRV---------------------------------------D 141

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFA 158
              +    + + T H+        I ++FP  A   I   F+
Sbjct: 142 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFS 183


>gi|91783265|ref|YP_558471.1| putative ATP-dependent DNA helicase, Rep [Burkholderia xenovorans
           LB400]
 gi|91687219|gb|ABE30419.1| Putative ATP-dependent DNA helicase, Rep [Burkholderia xenovorans
           LB400]
          Length = 520

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 42/161 (26%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMS 79
             +Q  A   T +  + A  GSGKT  +  ++ RLL  +   P  + C+T++ A   E+ 
Sbjct: 4   NEDQWCAYQATGNCVILAGPGSGKTKTITIKIARLLAEDVRRPRRVACITYSNACVGELR 63

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+  +    S                                        L + T+H+F
Sbjct: 64  SRLTRLGVGDS--------------------------------------DRLVLSTVHSF 85

Query: 140 CE-AIMQQFPLEANI-TSHF-AIADEEQSKKLIEEAKKSTL 177
           C   ++  +   A +       +A   Q++ L  +A ++ L
Sbjct: 86  CLTELVFPYAKMAGLQMPDPLVVASPAQARALFSDAYRAQL 126


>gi|257067799|ref|YP_003154054.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Brachybacterium faecium DSM 4810]
 gi|256558617|gb|ACU84464.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Brachybacterium faecium DSM 4810]
          Length = 1104

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 30/142 (21%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            ++A+AGSGKTH L   +   +     PS L+  T T  AAAE+  RV   +        
Sbjct: 7   LINASAGSGKTHTLTHEIAERIARGLDPSELIATTFTTKAAAELRDRVRRTL-------- 58

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                           +  +  AR +            + T+++    ++++F L+A I+
Sbjct: 59  --------------LERGQLEAARGV--------DSALISTVNSVSGELLREFALDAGIS 96

Query: 155 SHFAIADEEQSKKLIEEAKKST 176
               + DE++ K     A   T
Sbjct: 97  PDVQVLDEDRQKAAFRAAIDET 118


>gi|327329914|gb|EGE71668.1| ATP-dependent DNA helicase [Propionibacterium acnes HL097PA1]
          Length = 706

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+          P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAATGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|295130848|ref|YP_003581511.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|291376112|gb|ADD99966.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|313771945|gb|EFS37911.1| HRDC domain protein [Propionibacterium acnes HL074PA1]
 gi|313809674|gb|EFS47408.1| HRDC domain protein [Propionibacterium acnes HL083PA1]
 gi|313812639|gb|EFS50353.1| HRDC domain protein [Propionibacterium acnes HL025PA1]
 gi|313830010|gb|EFS67724.1| HRDC domain protein [Propionibacterium acnes HL007PA1]
 gi|313832985|gb|EFS70699.1| HRDC domain protein [Propionibacterium acnes HL056PA1]
 gi|314972842|gb|EFT16939.1| HRDC domain protein [Propionibacterium acnes HL053PA1]
 gi|314975735|gb|EFT19830.1| HRDC domain protein [Propionibacterium acnes HL045PA1]
 gi|314983666|gb|EFT27758.1| HRDC domain protein [Propionibacterium acnes HL005PA1]
 gi|315080863|gb|EFT52839.1| HRDC domain protein [Propionibacterium acnes HL078PA1]
 gi|315095780|gb|EFT67756.1| HRDC domain protein [Propionibacterium acnes HL038PA1]
 gi|327329838|gb|EGE71593.1| ATP-dependent DNA helicase [Propionibacterium acnes HL096PA2]
 gi|327442641|gb|EGE89295.1| HRDC domain protein [Propionibacterium acnes HL043PA1]
 gi|327443720|gb|EGE90374.1| HRDC domain protein [Propionibacterium acnes HL043PA2]
          Length = 706

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  R+          P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRIAYGAATGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|88860136|ref|ZP_01134775.1| DNA helicase IV [Pseudoalteromonas tunicata D2]
 gi|88818130|gb|EAR27946.1| DNA helicase IV [Pseudoalteromonas tunicata D2]
          Length = 707

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
           T  ++        +  V A AGSGKT ++V RV  LL +  A PS +L L + K AA EM
Sbjct: 196 TPKQRQACVINDDNNLVLAGAGSGKTSVMVGRVGYLLQSGLAKPSQILMLAYGKDAAQEM 255

Query: 79  SHRVLEIITA 88
             R+   +  
Sbjct: 256 DLRLKNSLQR 265


>gi|294084860|ref|YP_003551620.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664435|gb|ADE39536.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 914

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 3   YHNSFQEHSETIDLISQT-KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANA 60
           Y   ++ + +TI+    T K  Q +  D  R+  V A AG+GKT  +V +V  L+    A
Sbjct: 23  YRFRYKSYFDTIEKFPLTVKQRQSVIVDEKRN-LVIAGAGTGKTSTVVGKVGFLVKTKRA 81

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEI 85
            P+ +L + + + AA E+  R+ E 
Sbjct: 82  KPNEILAIAYNRNAARELRERIKEK 106


>gi|282853724|ref|ZP_06263061.1| HRDC domain protein [Propionibacterium acnes J139]
 gi|282583177|gb|EFB88557.1| HRDC domain protein [Propionibacterium acnes J139]
          Length = 706

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          L +    +  +A        V A AG+GKT  +  RV          P   L +T T  A
Sbjct: 22 LAALDPEQVKVAKTFDVPVCVIAGAGTGKTRAVTHRVAYGAATGKLDPRRTLAVTFTTKA 81

Query: 75 AAEMSHRVLEI 85
          A  M  R+ ++
Sbjct: 82 AGTMRGRLADL 92


>gi|182417609|ref|ZP_02948931.1| ATP-dependent helicase [Clostridium butyricum 5521]
 gi|237667256|ref|ZP_04527240.1| UvrD/REP helicase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378564|gb|EDT76093.1| ATP-dependent helicase [Clostridium butyricum 5521]
 gi|237655604|gb|EEP53160.1| helicase, UvrD/REP family [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 669

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 77/216 (35%), Gaps = 21/216 (9%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
           +  K ++       ++  V A  GSGKT +++ RV  L+   +   S ++ +T TKAAA 
Sbjct: 4   NLDKYQKDAVETNHKNVLVVAAPGSGKTTVIINRVNHLVNKLHVSNSNIIIITFTKAAAV 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
            M  R        +            K+  +   + D+              GG+     
Sbjct: 64  NMKKRYESAYNTNTSPFFGTFHGLFYKMLLRSGREIDIID------------GGVA---- 107

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H    +I+ ++  E N        +     K   +       SI  +  EE    + +  
Sbjct: 108 HKIVSSILNKYFDEVNDDKIKETINNISIFKTSRQLLNEFKPSISKEIFEEAYNTYEQYK 167

Query: 197 EISNDEDIETL----ISDIISNRTALKLIFFFFSYL 228
           E +N  D + L    +  + +++  L+     F Y+
Sbjct: 168 EENNKWDFDDLAIKTLEMLQNDKNLLEGYRRLFKYI 203


>gi|293557080|ref|ZP_06675639.1| UvrD/REP helicase [Enterococcus faecium E1039]
 gi|291600768|gb|EFF31061.1| UvrD/REP helicase [Enterococcus faecium E1039]
          Length = 728

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 47/162 (29%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           +SF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 61  SSFFKMMEKRSYNRFNQEQKAAITYDMKKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 121 ERILMITFTRNAANELKKRV---------------------------------------D 141

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFA 158
              +    + + T H+        I ++FP  A   I   F+
Sbjct: 142 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFS 183


>gi|257075812|ref|ZP_05570173.1| ATP-dependent DNA helicase [Ferroplasma acidarmanus fer1]
          Length = 890

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 42/239 (17%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            R   V +N G+GKT ++   V+ L+     P  +LC+T T  A  E+   + +++    
Sbjct: 3   NRDTLVISNPGTGKTTMISNEVINLIKEGVKPEKILCITFTNNAVGELQKSIDKLLIDNK 62

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSK----------ARHLLITILETPGGLKVQTIHAFC 140
             +       I         +   SK          AR+L+   L               
Sbjct: 63  IKNVTAYDVNIYTFHALAFQELFQSKAEKNIVSYNIARYLIYKKLRDLEAFNYG------ 116

Query: 141 EAIMQQFPLEANITS----------HFAIA--DEEQSKKLIEEAKKS-----TLASIMLD 183
               +++ +E +I             F I   D  +++ +I E+ +       + +I L+
Sbjct: 117 ----REYVIE-DIVPKLENAIRYIKSFGIMPVDIAKNRDIIMESLRKKYNSGIVRNIGLE 171

Query: 184 NNEELKKAFYEILEISNDE----DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
             E L   FY+      +     D   L+             + F   L     IE  +
Sbjct: 172 EEEYLFDYFYQAFNYYEENKENPDFNDLLFQFQKLEDKKTYEYVFVDELQDVNDIESRI 230


>gi|304439647|ref|ZP_07399550.1| DNA helicase II [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371887|gb|EFM25490.1| DNA helicase II [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 620

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 48/211 (22%)

Query: 20  TKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
              EQLLA++     A V A  G+GKT +L+ R  +L+ +   P  +L +T +KA++ +M
Sbjct: 5   LSKEQLLATEFRDGPAMVLAVPGAGKTTMLMHRTNKLISSGVDPQNILTITFSKASSLDM 64

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +  E+                                              +  TIHA
Sbjct: 65  KRKYFELFGK----------------------------------------NDAEFSTIHA 84

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEIL 196
           FC  I+        +  ++ + + ++  K  +E  K+   +I   N  +E L+    +I 
Sbjct: 85  FCYRILNYHKRLRGV--NYNLLEGKRPSK--QEILKNIYRNINKKNPTDEILESLLSDIS 140

Query: 197 EISND-EDIETLISDIISNRTALKLIFFFFS 226
            + N     E L+ +  S  +  K IF  + 
Sbjct: 141 YVKNMCISPEELVDNRGSEISGFKEIFHSYE 171


>gi|301162346|emb|CBW21891.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
          Length = 594

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 77/222 (34%), Gaps = 45/222 (20%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +Y N  +     I+   Q   +QL +   P +   V A AG GKTH +V R+  L+    
Sbjct: 1   MYQNEIEIIKSRIENKHQGDEKQLEIIFSPNKRLLVEAPAGYGKTHTMVSRIAYLISIGK 60

Query: 61  --HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
              P  LL LT +  AA ++   V + I                                
Sbjct: 61  LPVPKKLLALTFSVNAAYKIKKDVSKNIPELLQD-------------------------- 94

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQF-----PLEANITSHFAIADEEQSKKL----- 168
             L   +     + V   H FC +I++++     P  +N+ +  ++ D      +     
Sbjct: 95  --LGKQINIKEKIYVSNYHGFCRSILKKYGHRLHPALSNLDTLQSVDDSRSDSIMRVFNN 152

Query: 169 --IEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
             I+EA  + L+           K   E ++  N   I  L+
Sbjct: 153 ISIDEA--NVLSEFNAGVKNIKGKYLKENIDKYNSIVISKLL 192


>gi|294615260|ref|ZP_06695139.1| ATP-dependent DNA helicase SRS2, putative [Enterococcus faecium
           E1636]
 gi|291591899|gb|EFF23529.1| ATP-dependent DNA helicase SRS2, putative [Enterococcus faecium
           E1636]
          Length = 202

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 47/162 (29%)

Query: 5   NSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHP 62
           +SF +  E        + ++   + D  +   + A AGSGKT  +  + + L+       
Sbjct: 61  SSFFKMMEKRSYNRFNQEQKAAITYDMKKHLRIIAGAGSGKTQTICAKAVYLMTQKQVDE 120

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L +T T+ AA E+  RV                                        
Sbjct: 121 ERILMITFTRNAANELKKRV---------------------------------------D 141

Query: 123 TILETPGGLKVQTIHAFCEA----IMQQFPLEA--NITSHFA 158
              +    + + T H+        I ++FP  A   I   F+
Sbjct: 142 NFSQRKTAVHIGTFHSIFFRIYNEICRKFPEVAMQGIQGDFS 183


>gi|257066982|ref|YP_003153238.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
 gi|256798862|gb|ACV29517.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
          Length = 851

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 39/191 (20%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHR 81
           ++ +  +    A V A  G+GKTH +V  V   +     P+  +L  T TK AA E++ R
Sbjct: 6   QEEIIKNAKLPAVVIAGPGTGKTHTIVGFVAEAIKEGKFPANKVLITTFTKKAARELNTR 65

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++  +      +D                                    +K+   H+   
Sbjct: 66  IITRLRKDGLDTD---------------------------------LEDMKIGNFHSLAI 92

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
           + + ++    +   +  I D    + ++EE  +   +    ++      A   IL+I   
Sbjct: 93  SFISKYRRLDDNFFNLTIIDSNMEEFIVEENLEIFTSLPHFEDFIVKDYATATILDI--- 149

Query: 202 EDIETLISDII 212
              +TLI+ +I
Sbjct: 150 --FQTLINQMI 158


>gi|323491803|ref|ZP_08096978.1| DNA helicase IV [Vibrio brasiliensis LMG 20546]
 gi|323313938|gb|EGA67027.1| DNA helicase IV [Vibrio brasiliensis LMG 20546]
          Length = 688

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 38  ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           A AGSGKT +L  RV  LL ++ A P  +L L   + AA EM  R+ + +   + 
Sbjct: 219 AGAGSGKTSVLTARVAYLLQSHIARPEEILMLAFGRDAADEMKQRLNDKVGLSAE 273


>gi|54308421|ref|YP_129441.1| DNA helicase IV [Photobacterium profundum SS9]
 gi|46912849|emb|CAG19639.1| hypothetical helicase IV [Photobacterium profundum SS9]
          Length = 694

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++ ++ E +L +       V A AG+GKT +LV R   L+    A P  +L L   + AA
Sbjct: 197 LNSSQREAVLIN--QDHNLVLAGAGTGKTSVLVARAGYLVANQAAQPEEILMLAFGRNAA 254

Query: 76  AEMSHRVLEIITAWSHLS--DEILSAEITKIQGKKPNKSDMS 115
            EM  R+   +     ++    + +  I  ++ ++PN S ++
Sbjct: 255 EEMRERLALKVNNRIKVATFHALGTQIIQSVENERPNVSPLA 296


>gi|310831416|ref|YP_003970059.1| putative UvrD/REP helicase [Cafeteria roenbergensis virus BV-PW1]
 gi|309386600|gb|ADO67460.1| putative UvrD/REP helicase [Cafeteria roenbergensis virus BV-PW1]
          Length = 884

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHT 71
          +D  +   +++L+  D +    V A  GSGKTH L+ RV RL+  N    P  +  +T T
Sbjct: 29 LDWNNYDNNQKLVIQDNSDVILVEAYPGSGKTHTLLGRVKRLVSENPLLLPKMI-IITFT 87

Query: 72 KAAAAEMSHRV 82
          K A  E+  ++
Sbjct: 88 KKAGEELREKI 98


>gi|299537346|ref|ZP_07050646.1| UvrD/REP helicase [Lysinibacillus fusiformis ZC1]
 gi|298727237|gb|EFI67812.1| UvrD/REP helicase [Lysinibacillus fusiformis ZC1]
          Length = 718

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 14/126 (11%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           ++           + A+ GSGKT  ++ R+  ++ A    P+ +  +T +KA+A +M  R
Sbjct: 24  QKQAVLQTNGPLLLLASPGSGKTTTIIMRIGYMIEALGVKPARIKAVTFSKASANDMRAR 83

Query: 82  VLEIIT-------------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
             +                A+  + + +    I+    ++ +K  +   + +L  I E  
Sbjct: 84  FAKFFPHLPPVDFSTIHSLAFQVVRETLERQGISYGIMEEADKPGVMSKKRVLREIFEQF 143

Query: 129 GGLKVQ 134
            G K+ 
Sbjct: 144 NGSKIT 149


>gi|145596261|ref|YP_001160558.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305598|gb|ABP56180.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 1144

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 55/194 (28%), Gaps = 39/194 (20%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               +  +         V    G+GKT  LV+ V   +     P  +L LT ++  A  +
Sbjct: 37  DDPRQAEVTGHTIGPMLVLGGPGTGKTATLVEAVAARVAEGVDPERILVLTFSRRQATGL 96

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   I    H                            +L   L       V+T  A
Sbjct: 97  RQRIEARIAGGGH---------------------------RVLREPL-------VRTFPA 122

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
           +   ++++   E        +    +   +I E     L  +  + + +      ++   
Sbjct: 123 YAFGLLRRAAAERG-EPSPRLLTGPEQDLIIRE----LLDLVGEEPDADPVGWPEDLRPA 177

Query: 199 SNDEDIETLISDII 212
                    + D++
Sbjct: 178 LRTRAFAAQLRDLL 191


>gi|167945916|ref|ZP_02532990.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 138

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA---- 88
             + A+AG+GKT+ +    LRLLL        +L +T T+ A AE+  R+   +      
Sbjct: 15  LLIEASAGTGKTYTIAILFLRLLLQARLEVEQILVVTFTEVATAELRMRIRARLREALQQ 74

Query: 89  ----WSHLSDEILSAEITKIQGKKPNKSDMSKA--RHLLITILETPGGLK 132
                    D +L   +  I G++  +  +  A  R    + L  P  L 
Sbjct: 75  LRGLAQQPPDPLLRELLDGIDGRQEAQQRLEDALVRMDEASGLHHPRLLW 124


>gi|297588322|ref|ZP_06946965.1| DNA helicase II [Finegoldia magna ATCC 53516]
 gi|297573695|gb|EFH92416.1| DNA helicase II [Finegoldia magna ATCC 53516]
          Length = 610

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 40/133 (30%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           +  T+++Q   S     A V A  G+GKT +L+ R+  L  + N  P ++L +T +K+ A
Sbjct: 1   MKFTENQQKAISHFESPALVLAVPGAGKTTVLLNRIKYLEKVHNIDPKSILSITFSKSQA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            +M  R  E                                                  T
Sbjct: 61  VDMKERFSEKFPETESAYF---------------------------------------ST 81

Query: 136 IHAFCEAIMQQFP 148
           IH+FC  I++   
Sbjct: 82  IHSFCYYIIKLHY 94


>gi|254566359|ref|XP_002490290.1| Mitochondrial inner membrane localized ATP-dependent DNA helicase
           [Pichia pastoris GS115]
 gi|238030086|emb|CAY68009.1| Mitochondrial inner membrane localized ATP-dependent DNA helicase
           [Pichia pastoris GS115]
 gi|328350684|emb|CCA37084.1| hypothetical protein PP7435_Chr1-0950 [Pichia pastoris CBS 7435]
          Length = 701

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 37/116 (31%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +P  +  + A  G GKTH L+ R++ LL +   P  +L L+ T  A   +  R+++++  
Sbjct: 27  EPLTALKIVAGPGCGKTHTLIARIVHLLNSEVDPCQILVLSLTNRAVLSLRSRLIDLVGT 86

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                                                E    + +QT H+F   ++
Sbjct: 87  -------------------------------------ELAQQVNIQTFHSFAMNVL 105


>gi|315226989|ref|ZP_07868776.1| excision endonuclease subunit UvrD [Parascardovia denticolens DSM
           10105]
 gi|315119439|gb|EFT82572.1| excision endonuclease subunit UvrD [Parascardovia denticolens DSM
           10105]
          Length = 491

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 21/163 (12%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68
            ++ +  +  ++ +  +A +      + A AG+GKT  +++R+     + A      L +
Sbjct: 1   MNDILSGLDPSQRQAAMAVE--GPVRIIAGAGAGKTRTIMRRIAYACRSGAWREERALAV 58

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T +  AA EM  R+ + +      +    SA + +++    + SD          + +  
Sbjct: 59  TFSVKAAGEMQERLRK-LGIQGVQAATFHSAALGQLRQAWGDLSDAP-----FPQVSDNL 112

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
             L           +++         S F   D    +  I+ 
Sbjct: 113 RDL-----------VIRSMAKVTG-ESDFQDIDISDVQAEIDR 143


>gi|270283976|ref|ZP_05965334.2| putative DNA helicase II [Bifidobacterium gallicum DSM 20093]
 gi|270277840|gb|EFA23694.1| putative DNA helicase II [Bifidobacterium gallicum DSM 20093]
          Length = 510

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
            + ++L A     +  + A AG+GKT  + +R+     + A     +L +T +  AA EM
Sbjct: 23  DEQQRLAAQSVDGAVRIIAVAGAGKTRTITRRIAYGCASGAWDSQRVLAVTFSVKAAQEM 82

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
            +R+  +    S  +    SA + +++   P  SD
Sbjct: 83  RNRLSALNVPNSVTAATFHSAALHQLRDVWPEISD 117


>gi|218709640|ref|YP_002417261.1| putative helicase IV [Vibrio splendidus LGP32]
 gi|218322659|emb|CAV18835.1| putative Helicase IV [Vibrio splendidus LGP32]
          Length = 961

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 54/218 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + ++    T+ +++       +  + A AG+GKT ++V R   L+    A  + +L L +
Sbjct: 183 DNVESNPLTEKQRIACITDNDNNLLLAGAGTGKTSVMVGRTGYLINSDQATANDILLLAY 242

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            + AA EM  R+ + +                                            
Sbjct: 243 GRIAAKEMDERIKDKLG----------------------------------------FDD 262

Query: 131 LKVQTIHAFCEAIMQQ--------FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           ++  T H+    I+ +         P E +I +     ++   + ++++  + +L     
Sbjct: 263 VRASTFHSLGMKIIAEVEGSKPNLSPFEDDIKAKSKWMNDNLEQLMLDDGYRGSLLEYFS 322

Query: 183 DNNEELKKAFY-----EILEISNDEDIETLISDIISNR 215
                 K  F      E L+   D DI +L  D + + 
Sbjct: 323 SYYFVDKNPFEFQSEGEYLQYLTDNDIRSLKGDQVKSY 360


>gi|226355516|ref|YP_002785256.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
 gi|226317506|gb|ACO45502.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115]
          Length = 849

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 68/213 (31%), Gaps = 51/213 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           +  T  +Q +       A V A AGSGKT  LV RV  L+      P+ +L  T T+ A 
Sbjct: 1   MEFTVEQQRIVEHCDGHALVFAVAGSGKTTTLVSRVRYLVNHKRVRPTRILTTTFTREAG 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +  ++ E        +                                         T
Sbjct: 61  RSLREKLAEYPECAGVETL----------------------------------------T 80

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +HA    I+ +      +T    I ++  S++L  EA+   LA +  D  E         
Sbjct: 81  LHALATRILDR-ARTMGLT-DLIIGEDHFSQRLFSEARTQLLAELSEDERE-----LASR 133

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
           L     +D +T +      +  L+L +      
Sbjct: 134 LRQMTFKDFDTYLG---IQKGNLRLPYLPQDLP 163


>gi|254510274|ref|ZP_05122341.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
 gi|221533985|gb|EEE36973.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
          Length = 971

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTL 65
           + E  +T +    T  ++        +  V A AGSGKT ++  +   L+      PS +
Sbjct: 194 WSEFFDTFESNPLTPEQRTAIIADEDATLVLAGAGSGKTSVITAKAGYLIKTKTRAPSEI 253

Query: 66  LCLTHTKAAAAEMSHRVLEIITA 88
           L L + K AA EMS R+      
Sbjct: 254 LLLAYAKDAAKEMSERIELRCGE 276


>gi|188991830|ref|YP_001903840.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733590|emb|CAP51795.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris]
          Length = 604

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 42/160 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
           QL A +      V A  GSGKT  LV ++ R+L  +   P    C+T+++  A E++ R+
Sbjct: 23  QLAAYNSRGHCVVLAGPGSGKTKTLVLKLARILAEDVETPRGAACITYSQECARELTRRI 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +                                       L     L + T+H FC  
Sbjct: 83  EAL--------------------------------------GLRQAPNLFIGTVHGFCLR 104

Query: 143 -IMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLAS 179
            ++  +   A +   F  ++A +  S +L+++   +    
Sbjct: 105 HLLMPYGRLAGLPIPFPLSVATQRVSDRLLKQTGDALFGQ 144


>gi|307132009|ref|YP_003884025.1| DNA helicase IV [Dickeya dadantii 3937]
 gi|306529538|gb|ADM99468.1| DNA helicase IV [Dickeya dadantii 3937]
          Length = 685

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           ++++      S+     +   +  V A AGSGKT +LV R   LL  A A    +L L  
Sbjct: 190 DSVESSPLNPSQCQAVVNGENAVLVLAGAGSGKTSVLVARAAWLLHRAEASAQQILLLAF 249

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            + AA EM+ R+ E +      +    +  +  IQ        +S+
Sbjct: 250 GRQAADEMNGRIRERLHTDDIQAKTFHALALHIIQQCSRKAPVISQ 295


>gi|237808232|ref|YP_002892672.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237500493|gb|ACQ93086.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 698

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66
           Q   + I+  + T +++           V A AG+GKT  ++ R   LL+ A A P  +L
Sbjct: 189 QSFFDHIEKNTLTLAQRKACIINEDHNLVLAGAGTGKTSTMIGRAGYLLVTAQAQPEKIL 248

Query: 67  CLTHTKAAAAEMSHR 81
            L   K AA EM  R
Sbjct: 249 MLAFAKKAAGEMQER 263


>gi|301308960|ref|ZP_07214905.1| UvrD/REP helicase family protein [Bacteroides sp. 20_3]
 gi|300832986|gb|EFK63611.1| UvrD/REP helicase family protein [Bacteroides sp. 20_3]
          Length = 871

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K ++        +  V ++AGSGKT  +V +V  L  +   +P  +L +++T  AAAE+
Sbjct: 156 DKQQRRSIVSGEENCLVVSSAGSGKTSSIVGKVKYLTEIKKINPQNILLISYTNKAAAEL 215

Query: 79  SHR 81
           + R
Sbjct: 216 TER 218


>gi|291531503|emb|CBK97088.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum 70/3]
          Length = 767

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 49/227 (21%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
            +++   +Q  A      +  + A  GSGKT +L+ R+  ++      PS +L +T+T+A
Sbjct: 10  FMAEMSEQQNTAVKAVQGAVLLLAVPGSGKTTVLITRLGYMINCCGISPSEILAVTYTRA 69

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A  E+  R  +   +                                     E   GL++
Sbjct: 70  ATLELKKRFADRFGS-------------------------------------ECGAGLEI 92

Query: 134 QTIHAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +TI+     I++ F     + N+    +   E   K+LI E  +                
Sbjct: 93  RTINGLSAKIIEYFSTVYTDENVPHLMSR--EGDRKRLISEVYRLVTGEFADTATINDIS 150

Query: 191 AFYEILE--ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           A     +  + +DE+IE L     S    L++   +   L  R +++
Sbjct: 151 AIITFAKNMMLSDEEIEALSG---SGYDTLRIYREYNLALSSRSLMD 194


>gi|291301848|ref|YP_003513126.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571068|gb|ADD44033.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 697

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 12 ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
             +++S    EQ  A S       + A AG+GKT  +  R+   +         +L +T
Sbjct: 5  RLREVLSGLDDEQAAAVSADAGPVCILAGAGTGKTRAVTHRIAYRVRRGDLRGQHVLAVT 64

Query: 70 HTKAAAAEMSHRVLEI 85
           T  AA E+  R+ ++
Sbjct: 65 FTARAAGELRDRLRDL 80


>gi|296130687|ref|YP_003637937.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022502|gb|ADG75738.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 643

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 47/182 (25%)

Query: 11  SETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCL 68
           S+   +++    +Q      P     + A AG+GKT  +  R+    L  A P+  +L +
Sbjct: 8   SDADRVLAGLDEQQTGAVVAPPGPVRIMAGAGTGKTRTITHRIAYQHLTGAVPAHGVLAV 67

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           TH+  AA EM  R+  +                                           
Sbjct: 68  THSSRAAGEMRDRLARL-----------------------------------------GV 86

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ----SKKLIEEAKKSTLASIMLDN 184
           GG++ +T HA     ++ F     +     +  +        + +  A  + L +   D 
Sbjct: 87  GGVQARTFHAAALRQLRYFWRATGLPGDGPVLIDADGPGAQYRYLRGALGAVLRTPARDV 146

Query: 185 NE 186
           + 
Sbjct: 147 DA 148


>gi|39998356|ref|NP_954307.1| DNA helicase II [Geobacter sulfurreducens PCA]
 gi|39985302|gb|AAR36657.1| DNA helicase II, putative [Geobacter sulfurreducens PCA]
          Length = 1078

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 55/204 (26%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
             + LA D +R   V+A  G+GKT+ LV R+  LL A    P+ +  +T T  AAAE+  
Sbjct: 467 QAEALACDASR-VLVAAGPGTGKTYTLVARLAALLAAPGTDPARVCAITFTNRAAAEVRE 525

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+  +                                        E  G + V T H FC
Sbjct: 526 RLAAVAG--------------------------------------EAAGQVFVGTFHRFC 547

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
              +++            +  +E  ++L+    +     I +     L     + L   N
Sbjct: 548 LDWLRRE------EPDRVVVGDESRERLL----RRLFPEIGVRERSGLAAEIADFLHRDN 597

Query: 201 DED----IETLISDIISNRTALKL 220
             D    +   + ++ + R A+ L
Sbjct: 598 GGDAPEPVRFYLDEL-ARRGAMDL 620


>gi|269138628|ref|YP_003295328.1| DNA helicase IV [Edwardsiella tarda EIB202]
 gi|267984288|gb|ACY84117.1| DNA helicase IV [Edwardsiella tarda EIB202]
 gi|304558640|gb|ADM41304.1| DNA helicase IV [Edwardsiella tarda FL6-60]
          Length = 700

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 11  SETIDLISQ------TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           SE  D  ++        S+ L   +  ++  V A AGSGKT +L+ R   LL        
Sbjct: 199 SERADFFAEAMPSPLNDSQALAVVNGEQNVLVLAGAGSGKTSVLLARCAWLLQGGQTDAE 258

Query: 64  TLLCLTHTKAAAAEMSHRVLEI 85
            +L L   + AA EM+ R+ + 
Sbjct: 259 QILPLAFGRRAAQEMTQRLRQT 280


>gi|121998487|ref|YP_001003274.1| UvrD/REP helicase [Halorhodospira halophila SL1]
 gi|121589892|gb|ABM62472.1| UvrD/REP helicase [Halorhodospira halophila SL1]
          Length = 695

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 77/219 (35%), Gaps = 42/219 (19%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ T  ++ +   P   A VSA AGSGKT  LV RV+ LL   A  + +  L   ++A  
Sbjct: 1   MALTPEQRQVIEHPGGHARVSAAAGSGKTATLVARVVELLRRGADSARIRVLMFNRSA-- 58

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
                                             + D  +   + I        + VQT 
Sbjct: 59  ----------------------------------REDFERRLAVAIREAGCQARVSVQTF 84

Query: 137 HAFCEAIMQQFPLEA-NITSHFAIAD-EEQSKKLIEEAKKSTLA--SIMLDNNEELKKAF 192
           H+    ++Q+  LEA  +     +   +  ++KL   A ++ L          +E   AF
Sbjct: 85  HSAGYRLLQR--LEAEGVVPRRRLESADWVARKLARTALEAALENRDEAEAVEDEAVDAF 142

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
              +++   +  E  +    + R     +   +   +RR
Sbjct: 143 LAFVDVVKADTREAAVIHAEAPRLLGAALPGHYLEAFRR 181


>gi|228964028|ref|ZP_04125158.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228795680|gb|EEM43157.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 619

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 41/152 (26%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTH 70
             I +++    ++  A+  ++   VSA  G+GKT  L  R+L L          +L ++ 
Sbjct: 18  NIIQMLND--EQRNAATSTSQYLKVSAGPGTGKTSTLAARILHLQTTEELSSDNILAISF 75

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           +++A  ++ +R+ E                                       I  +   
Sbjct: 76  SRSAKKQLINRLYE------------------------------------YTAINGSGSL 99

Query: 131 LKVQTIHAFCEAIMQQ--FPLEANITSHFAIA 160
           +++ T H+    I++   F  E+N+ + F I 
Sbjct: 100 IEILTFHSLAHRIIRHGIFYKESNLRTGFHIL 131


>gi|212639901|ref|YP_002316421.1| ATP-dependent DNA helicase UvrD subfamily fused to unknown CXXC
           motif containing domain [Anoxybacillus flavithermus WK1]
 gi|212561381|gb|ACJ34436.1| ATP-dependent DNA helicase UvrD subfamily fused to unknown CXXC
           motif containing domain [Anoxybacillus flavithermus WK1]
          Length = 716

 Score = 69.9 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
            I     +   A        V A AGSGKT  L  R   ++  +      ++ +T T  A
Sbjct: 101 GIPLDAEQYEAAQHVEGPLLVLAGAGSGKTRTLTTRAAAMIAHHRIQSKNMMIVTFTTKA 160

Query: 75  AAEMSHRVLEI 85
           A E+  R+   
Sbjct: 161 AKELVDRLQSY 171


>gi|157148134|ref|YP_001455453.1| hypothetical protein CKO_03945 [Citrobacter koseri ATCC BAA-895]
 gi|157085339|gb|ABV15017.1| hypothetical protein CKO_03945 [Citrobacter koseri ATCC BAA-895]
          Length = 573

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 45/154 (29%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTKAAAAEMSHRV 82
           A     +  ++A  GSGKT  LV ++  +L            ++ LT+T  AA  +  R+
Sbjct: 3   AVKFNGNLLLTACPGSGKTKTLVSKLCFILENKELFCIGKKKIIALTYTNIAADTILERI 62

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-E 141
           +    +                                          L + TIH+FC  
Sbjct: 63  MSFGISSES---------------------------------------LWIGTIHSFCLN 83

Query: 142 AIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKK 174
            I++    +   +   F++ DE + + LI E K+
Sbjct: 84  WIIKPNVDKIPRLCRGFSVIDEHEKEFLINELKE 117


>gi|187935725|ref|YP_001887064.1| ATP-dependent helicase [Clostridium botulinum B str. Eklund 17B]
 gi|187723878|gb|ACD25099.1| helicase, UvrD/REP family [Clostridium botulinum B str. Eklund
          17B]
          Length = 668

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
          +        ++A + A  GSGKT +++ R+  L+         ++ +T TKAAA  M  R
Sbjct: 8  QNEAVITKDKNALIIAAPGSGKTTVIINRIYYLVNKLKVSNGRIIIITFTKAAAKNMKER 67


>gi|92113735|ref|YP_573663.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043]
 gi|91796825|gb|ABE58964.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043]
          Length = 729

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 39/173 (22%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  ++ +       A VSA AG+GKT  LVQRVL LL +   P  +L L     AA E 
Sbjct: 5   PTPEQRAVVGHGQGHARVSAVAGAGKTTTLVQRVLHLLASGVPPQRILVLMF-NRAARE- 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                          D     +      + P+                      V+T H+
Sbjct: 63  ---------------DFTAKLQREATGQRLPD----------------------VRTFHS 85

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
               + Q       ++    IA + Q ++L+ +A + +L        +   +A
Sbjct: 86  IGHRLTQTLTRWGYLSPRQLIAADWQRERLLRQAVQMSLEQADDSQRQAALEA 138


>gi|84488957|ref|YP_447189.1| helicase [Methanosphaera stadtmanae DSM 3091]
 gi|84372276|gb|ABC56546.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 731

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 30/147 (20%)

Query: 1   MIYHNSFQEHSETI--DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLL 57
           MI    + E  ETI    ++ +  ++ + +    S ++ A  GSGKT +LV ++L    +
Sbjct: 1   MISQEKYIELVETILNRSMANSSQKEAIMAPVDESQYIVAGPGSGKTTVLVLKILKYYFV 60

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
            +     ++  T TK AA E+ +R +      S   D  L+ +                 
Sbjct: 61  DDISFDDVIVTTFTKKAARELKNRTILWAKMISEALDYDLNYD----------------- 103

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIM 144
                        + + T+ +  E I+
Sbjct: 104 ----------FNRMVIGTLDSIAEDIV 120


>gi|238919307|ref|YP_002932822.1| DNA helicase IV [Edwardsiella ictaluri 93-146]
 gi|238868876|gb|ACR68587.1| helicase IV [Edwardsiella ictaluri 93-146]
          Length = 700

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 11  SETIDLISQ------TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63
           SE  D  +         S+ L   +  ++  V A AGSGKT +L+ R   LL        
Sbjct: 199 SERADFFADVMPSPLNDSQALAVVNGEQNVLVLAGAGSGKTSVLLARCAWLLQGGQVDAG 258

Query: 64  TLLCLTHTKAAAAEMSHRVLEI 85
            +L L   + AA EM+ R+ + 
Sbjct: 259 QILPLAFGRRAAQEMTQRLRQT 280


>gi|325523880|gb|EGD02102.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. TJI49]
          Length = 102

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
          + A+AG+GKT  +    +RLLL  +     +L +T TKAA AE+  R+   +   +H  +
Sbjct: 26 IEASAGTGKTWNICALYVRLLLEKDLGADQILVVTFTKAATAELHERIRGRLAQLAHALE 85


>gi|310830868|ref|YP_003965969.1| DNA helicase II [Paenibacillus polymyxa SC2]
 gi|309250335|gb|ADO59901.1| DNA helicase II [Paenibacillus polymyxa SC2]
          Length = 737

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 82/230 (35%), Gaps = 59/230 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++ +  ++        +  V A+ GSGKT +++ ++  L+   +  PS +  +T + A+
Sbjct: 14  GVNLSAVQREAVEHTEGALLVLASPGSGKTTMMIMKIGYLIEEKDVDPSRIRAVTFSNAS 73

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A +M +R  ++   + HL D                                    +K  
Sbjct: 74  ATDMDNRFDKL---FPHLKD----------------------------------NKVKFS 96

Query: 135 TIHAFCEAIMQQFPLEANITSH-------------FAIADEEQSKKLIEEAKKSTLASIM 181
           TIH+F   +++ +  + NI                  + ++   + ++    +      +
Sbjct: 97  TIHSFAFEVVRAYFKKNNIRYQLIEGNMDKPNSEPCRVVNKLNKRIILRRIFREVTQENV 156

Query: 182 LDNNEELKKAFY-----EILEISNDEDIETLI---SDIISNRTALKLIFF 223
            +   E   ++      +++     EDIET I   S+I  +    K   F
Sbjct: 157 TEEQMEELLSYISYIKNKLIPYDQLEDIETSIPSASEIFLSYEEFKCADF 206


>gi|188589230|ref|YP_001921985.1| ATP-dependent helicase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499511|gb|ACD52647.1| helicase, UvrD/REP family [Clostridium botulinum E3 str. Alaska
          E43]
          Length = 668

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
          +        ++A + A  GSGKT +++ R+  L+         ++ +T TKAAA  M  R
Sbjct: 8  QNKAVITEDKNALIIAAPGSGKTTVIINRIYYLVDKLKISNGRIIVITFTKAAAKNMKER 67


>gi|251778107|ref|ZP_04821027.1| helicase, UvrD/REP family [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243082422|gb|EES48312.1| helicase, UvrD/REP family [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 668

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
          +        ++A + A  GSGKT +++ R+  L+         ++ +T TKAAA  M  R
Sbjct: 8  QNKAVITEDKNALIIAAPGSGKTTVIINRIYYLVDKLKISNGRIIVITFTKAAAKNMKER 67


>gi|253576278|ref|ZP_04853609.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844405|gb|EES72422.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 732

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 43/158 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            +   + ++           + A+ GSGKT  ++ R+  L+      P  +  +T ++A+
Sbjct: 16  GVELNEIQKQAVLQTEGPLLLLASPGSGKTTTIIMRIGYLIEERGVSPRRIKAVTFSRAS 75

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A +M  R                                         T       +   
Sbjct: 76  AHDMKER---------------------------------------FNTFFPELTPVDFS 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           TIH+    ++++        + F I  E       +EA
Sbjct: 97  TIHSLAFEVVREHFRATQ--TSFQII-EGDVDAAQQEA 131


>gi|325973160|ref|YP_004250224.1| DNA helicase II [Mycoplasma suis str. Illinois]
 gi|323651762|gb|ADX97844.1| DNA helicase II [Mycoplasma suis str. Illinois]
          Length = 744

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 46/202 (22%)

Query: 17  ISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +   +QL   +    R+  + A  GSGKT ++++++   L     P  +L +T+T   
Sbjct: 14  LQEPNRQQLEIINFNENRNVGIIAGPGSGKTFVIIEKIRFYLSNKIEPRKILLVTYTNRG 73

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E+  R+ + +                             KA+                
Sbjct: 74  IIEIKQRINKFV-----------------------------KAKREFEYA---------G 95

Query: 135 TIHAFCEAIM-QQFPLEAN--ITSHFA--IADEEQSKK-LIEEAKKSTLASIMLDNNEEL 188
           T+H+ C+  + ++F  E +  +   F   I    + K   + E     +  I L   EE 
Sbjct: 96  TLHSICKKFLEREFKFELSELLNWKFNKLIIQSMEDKYFFLREEIPKQINEIFLGQGEEE 155

Query: 189 KKAFYEILEISNDEDIETLISD 210
                +I      E  E ++ +
Sbjct: 156 SDQSVKISRDIAAEIFEIVLEE 177


>gi|325989603|ref|YP_004249302.1| DNA helicase, UvrD type [Mycoplasma suis KI3806]
 gi|323574688|emb|CBZ40344.1| DNA helicase, UvrD type [Mycoplasma suis]
          Length = 744

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 46/202 (22%)

Query: 17  ISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + +   +QL   +    R+  + A  GSGKT ++++++   L     P  +L +T+T   
Sbjct: 14  LQEPNRQQLEIINFNENRNVGIIAGPGSGKTFVIIEKIRFYLSNKIEPRKILLVTYTNRG 73

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E+  R+ + +                             KA+                
Sbjct: 74  IIEIKQRINKFV-----------------------------KAKREFEYA---------G 95

Query: 135 TIHAFCEAIM-QQFPLEAN--ITSHFA--IADEEQSKK-LIEEAKKSTLASIMLDNNEEL 188
           T+H+ C+  + ++F  E +  +   F   I    + K   + E     +  I L   EE 
Sbjct: 96  TLHSICKKFLEREFKFELSELLNWKFNKLIIQSMEDKYFFLREEIPKQINEIFLGQGEEE 155

Query: 189 KKAFYEILEISNDEDIETLISD 210
                +I      E  E ++ +
Sbjct: 156 SDQSVKISRDIAAEIFEIVLEE 177


>gi|169344401|ref|ZP_02865371.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens C
           str. JGS1495]
 gi|169297474|gb|EDS79582.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens C
           str. JGS1495]
          Length = 664

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +  K +       ++S  V A  G+GKT +++ R+  LL         ++ +T TKAA
Sbjct: 1   MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEERKVKGIHIIVITFTKAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           A  M  R  E+                 KI  +  ++  + +++
Sbjct: 61  AENMKSRFKEMHKEGVVPFFGTFHGLFYKILLRNKDEIRLIESK 104


>gi|322388874|ref|ZP_08062466.1| DNA helicase [Streptococcus infantis ATCC 700779]
 gi|321140257|gb|EFX35770.1| DNA helicase [Streptococcus infantis ATCC 700779]
          Length = 640

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 63/195 (32%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A    ++  +   AGSGKT  L+  ++  +  +    +++C+T+T  A AE+  R+    
Sbjct: 16  AIKEDKNFILEGGAGSGKTFSLIS-IIEKISRDEPDKSIVCITYTNNAVAEIRERI---- 70

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                                                   T   LKV TIH F  +I+ Q
Sbjct: 71  ----------------------------------------TNDKLKVSTIHEFIWSIIGQ 90

Query: 147 FPLEAN---ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203
           F  E     I     + ++++ K          +  +   +  +L   ++E + +  D  
Sbjct: 91  FQNEIKYCLID----LINDDEQK--------EFIRPLDYPSESQLTDTYFENIRVDYD-- 136

Query: 204 IETLISDIISNRTAL 218
            E     II NR  +
Sbjct: 137 -ERYSMSIIDNRVQI 150


>gi|326565387|gb|EGE15564.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis
           103P14B1]
          Length = 1315

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 36/184 (19%)

Query: 19  QTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
              SEQ+ A      ++  + A+AG+GKT  L   +LRLL+     P  ++  T T+AAA
Sbjct: 13  PKPSEQIAALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATTFTRAAA 72

Query: 76  AEMSHRVLEIITAW---------------------SHLSDEILSAEITKIQGKKPNKSDM 114
           AEM  R+ E + ++                     + +   I SA+        P    +
Sbjct: 73  AEMQERISERLHSFYGLMRWLQGMLSTQPEWFNQTAPIEQIITSADQAGYDAADPINEHL 132

Query: 115 SK----ARHLLIT--------ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
            +     +   +         +L +   L V T+ +  +  + +F  +    S   I + 
Sbjct: 133 LRFILSQKATFLNEVVYRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSGMEILNN 192

Query: 163 EQSK 166
            + K
Sbjct: 193 AEQK 196


>gi|164686809|ref|ZP_02210837.1| hypothetical protein CLOBAR_00405 [Clostridium bartlettii DSM
           16795]
 gi|164604199|gb|EDQ97664.1| hypothetical protein CLOBAR_00405 [Clostridium bartlettii DSM
           16795]
          Length = 502

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           ++        +  V A AGSGKT IL +++   L  N     +  +T T  AA E+S R+
Sbjct: 5   DRESILADEGNVIVVAGAGSGKTTILTKKIGIDLENNKKHYKIAAITFTNKAAKEISERL 64

Query: 83  -LEIITAWSHLSDEILSAEITK 103
            +     +   +D  +  EI +
Sbjct: 65  TISTRGHFLGTNDSFVENEIIR 86


>gi|255729194|ref|XP_002549522.1| hypothetical protein CTRG_03819 [Candida tropicalis MYA-3404]
 gi|240132591|gb|EER32148.1| hypothetical protein CTRG_03819 [Candida tropicalis MYA-3404]
          Length = 638

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 47/192 (24%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           DP     V A  G+GKT  L+ RV +LL     P  ++ L+ T                 
Sbjct: 16  DPKTVLSVQAGPGTGKTLTLIHRVKKLLEDGMDPKEIVVLSMTN---------------- 59

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                 ++  S  + L   I E    +++QT H+F  ++++ + 
Sbjct: 60  ----------------------RTVKSFRQALAGLIGEEAEQIRIQTFHSFANSLIENYS 97

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE-ILEISNDEDIETL 207
              +         ++ ++ L+ +       ++ +D   +  +AF + IL + + EDI+ +
Sbjct: 98  --GDYFP------DKGAQILVNDTSFRGYTNLFMDIKSKRPRAFEKAILAVKSGEDIDEM 149

Query: 208 ISDIISNRTALK 219
                 ++  L+
Sbjct: 150 SKKFKVDKNDLE 161


>gi|126651809|ref|ZP_01724010.1| DNA helicase II [Bacillus sp. B14905]
 gi|126591277|gb|EAZ85385.1| DNA helicase II [Bacillus sp. B14905]
          Length = 720

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 44/165 (26%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81
           +            + A+ GSGKT  ++ R+  ++      PS +  +T +KA+A +M  R
Sbjct: 26  QTQAVLQTNGPLLLLASPGSGKTTTIIMRIGYMIEELGVKPSRIKAVTFSKASAGDMKAR 85

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
                                                            +   TIH+   
Sbjct: 86  ---------------------------------------FAKFFPHLPPVDFSTIHSLAF 106

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            +++Q      I+    I +E     ++  +KK  L  I    N+
Sbjct: 107 QVVRQTLERQGISYG--IIEESDKPGVV--SKKRVLREIFEQLND 147


>gi|85858291|ref|YP_460492.1| superfamily I DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85721382|gb|ABC76325.1| superfamily I DNA and RNA helicase [Syntrophus aciditrophicus SB]
          Length = 287

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 74/198 (37%), Gaps = 27/198 (13%)

Query: 12  ETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69
             ++ ++    + ++  D  + +  V A  GSGKT +LV R+  L+ +   +   +L L 
Sbjct: 53  NIVESLNNPVQQHIVTDDREKTNVLVLAGPGSGKTRVLVHRIAYLVRVKRENARGILALA 112

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT-KIQGKKPNKSDMSKARHLLITILETP 128
           + + AA E+  R+ ++I   +     +    +  ++ G                 +L+  
Sbjct: 113 YNRHAAVEIRRRLADLIGDDARGVTVLTCHALAMRLAGVSFAGHTEMLDDDAFKKVLQQA 172

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             L           + ++      +      ADE++ + L      +    I++D  +++
Sbjct: 173 VAL-----------LKRE-----GLPP--EEADEQRDRLL------AGFRWILVDEYQDI 208

Query: 189 KKAFYEILEISNDEDIET 206
               YE++        + 
Sbjct: 209 GPEQYELISALAGRTSQD 226


>gi|183221749|ref|YP_001839745.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911824|ref|YP_001963379.1| DNA helicase-like protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776500|gb|ABZ94801.1| DNA helicase-related protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780171|gb|ABZ98469.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 427

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 41/130 (31%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAE 77
            ++ +  +         V A AGSGKT  ++  + R        P   L +T TK A  E
Sbjct: 2   WSEEQSKIIHSTEPVIQVIAGAGSGKTATMIGLLERREKNETILPEETLVVTFTKKATHE 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              R                             K  +S + H             + T H
Sbjct: 62  FKER---------------------------CQKKSLSNSYH-------------ISTFH 81

Query: 138 AFCEAIMQQF 147
           +FC   ++QF
Sbjct: 82  SFCYDSLKQF 91


>gi|253682928|ref|ZP_04863715.1| UvrD/REP helicase [Clostridium phage D-1873]
 gi|253560854|gb|EES90316.1| UvrD/REP helicase [Clostridium phage D-1873]
          Length = 597

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 41/128 (32%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +   K +    +    +  V A AGSGK+ +LV R+  ++  N +   +L +T TK  + 
Sbjct: 3   VKFNKQQLEAINTLEGAVAVIAGAGSGKSTVLVNRIKNMVDNNINQDKILAITFTKNTSK 62

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++  ++  +                                             + V T 
Sbjct: 63  DLKQKLHRL-----------------------------------------DLDNIHVGTF 81

Query: 137 HAFCEAIM 144
           H+ C  I+
Sbjct: 82  HSICSKIL 89


>gi|27366578|ref|NP_762105.1| DNA helicase IV [Vibrio vulnificus CMCP6]
 gi|27358144|gb|AAO07095.1| DNA helicase IV [Vibrio vulnificus CMCP6]
          Length = 690

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    +L L   + AA E+  
Sbjct: 203 SQQHAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQATDEQMLLLAFGRDAAQELKQ 262

Query: 81  RVLEIITAWSH 91
           R+++ I   + 
Sbjct: 263 RLVDKIGLAAQ 273


>gi|37676289|ref|NP_936685.1| DNA helicase IV [Vibrio vulnificus YJ016]
 gi|37200830|dbj|BAC96655.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 690

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    +L L   + AA E+  
Sbjct: 203 SQQHAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQATDEQMLLLAFGRDAAQELKQ 262

Query: 81  RVLEIITAWSH 91
           R+++ I   + 
Sbjct: 263 RLVDKIGLAAQ 273


>gi|329938004|ref|ZP_08287486.1| putative DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329302961|gb|EGG46850.1| putative DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 631

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST------L 65
           +D    T+ +  +          V+A AG+GKTH LV+R L  L  +  P        +
Sbjct: 5  YLDSPPLTEEQLAVVEQSWDARVLVTAGAGAGKTHTLVRR-LDALCGHEDPEEALDAADI 63

Query: 66 LCLTHTKAAAAEMSHRVLE 84
          L LT ++AAA E+  R+  
Sbjct: 64 LVLTFSRAAARELRERITR 82


>gi|326575729|gb|EGE25652.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis CO72]
          Length = 1315

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 36/190 (18%)

Query: 13  TIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           TI       SEQ+ A      ++  + A+AG+GKT  L   +LRLL+     P  ++  T
Sbjct: 7   TIPPTPPKPSEQIAALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATT 66

Query: 70  HTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKA--------- 117
            T+AAAAEM  R+ E + ++  L      +LS +        P +  ++ A         
Sbjct: 67  FTRAAAAEMQERISERLHSFYGLMRWLQGMLSTQPEWFNQTAPIEQIITYADQAGYDAAD 126

Query: 118 ---RHLLITILE------------------TPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
               HLL  IL                   +   L V T+ +  +  + +F  +    S 
Sbjct: 127 PINEHLLRFILSQKATFLNEVVYRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSG 186

Query: 157 FAIADEEQSK 166
             I +  + K
Sbjct: 187 MEILNNAEQK 196


>gi|326571084|gb|EGE21108.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis BC7]
          Length = 1315

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 36/190 (18%)

Query: 13  TIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           TI       SEQ+ A      ++  + A+AG+GKT  L   +LRLL+     P  ++  T
Sbjct: 7   TIPPTPPKPSEQIAALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATT 66

Query: 70  HTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKA--------- 117
            T+AAAAEM  R+ E + ++  L      +LS +        P +  ++ A         
Sbjct: 67  FTRAAAAEMQERISERLHSFYGLMRWLQGMLSTQPEWFNQTAPIEQIITYADQAGYDAAD 126

Query: 118 ---RHLLITILE------------------TPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
               HLL  IL                   +   L V T+ +  +  + +F  +    S 
Sbjct: 127 PINEHLLRFILSQKATFLNEVVYRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSG 186

Query: 157 FAIADEEQSK 166
             I +  + K
Sbjct: 187 MEILNNAEQK 196


>gi|326560523|gb|EGE10905.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis 7169]
          Length = 1315

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 36/190 (18%)

Query: 13  TIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           TI       SEQ+ A      ++  + A+AG+GKT  L   +LRLL+     P  ++  T
Sbjct: 7   TIPPTPPKPSEQIAALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATT 66

Query: 70  HTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKA--------- 117
            T+AAAAEM  R+ E + ++  L      +LS +        P +  ++ A         
Sbjct: 67  FTRAAAAEMQERISERLHSFYGLMRWLQGMLSTQPEWFNQTAPIEQIITYADQAGYDAAD 126

Query: 118 ---RHLLITILE------------------TPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
               HLL  IL                   +   L V T+ +  +  + +F  +    S 
Sbjct: 127 PINEHLLRFILSQQATFLNEVVYRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSG 186

Query: 157 FAIADEEQSK 166
             I +  + K
Sbjct: 187 MEILNNAEQK 196


>gi|320158465|ref|YP_004190843.1| DNA helicase IV [Vibrio vulnificus MO6-24/O]
 gi|319933777|gb|ADV88640.1| DNA helicase IV [Vibrio vulnificus MO6-24/O]
          Length = 690

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80
           S+Q           V A AGSGKT +L  RV  LL ++ A    +L L   + AA E+  
Sbjct: 203 SQQHAVLLNDDHNLVLAGAGSGKTSVLTARVAYLLQSHQATDEQMLLLAFGRDAAQELKQ 262

Query: 81  RVLEIITAWSH 91
           R+++ I   + 
Sbjct: 263 RLVDKIGLAAQ 273


>gi|254458617|ref|ZP_05072042.1| ATP-dependent DNA helicase, RecQ family, putative [Campylobacterales
            bacterium GD 1]
 gi|207084925|gb|EDZ62212.1| ATP-dependent DNA helicase, RecQ family, putative [Campylobacterales
            bacterium GD 1]
          Length = 1596

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 18   SQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74
            ++   EQ    D   S    + A  GSGKT +LV ++  L+L  N      L LT+++ A
Sbjct: 1038 NELSDEQKKVIDDNESQGMMILAGPGSGKTKVLVHKIASLILQENIKADQFLMLTYSRTA 1097

Query: 75   AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
              E   R+ E+I   ++  D       +     +   SD    ++++    +     K+
Sbjct: 1098 MLEFKSRLFELIGQLAYDIDIFTFHGFSLQLVGREVSSDDDLLKNVVALAAKQINDGKI 1156


>gi|326564874|gb|EGE15078.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis 12P80B1]
 gi|326570398|gb|EGE20438.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis BC8]
 gi|326577194|gb|EGE27088.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis O35E]
          Length = 1315

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 36/190 (18%)

Query: 13  TIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69
           TI       SEQ+ A      ++  + A+AG+GKT  L   +LRLL+     P  ++  T
Sbjct: 7   TIPPTPPKPSEQIAALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATT 66

Query: 70  HTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKA--------- 117
            T+AAAAEM  R+ E + ++  L      +LS +        P +  ++ A         
Sbjct: 67  FTRAAAAEMQERISERLHSFYGLMRWLQGMLSTQPEWFNQTAPIEQIITYADQAGYDAAD 126

Query: 118 ---RHLLITILE------------------TPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
               HLL  IL                   +   L V T+ +  +  + +F  +    S 
Sbjct: 127 PINEHLLRFILSQQATFLNEVVYRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSG 186

Query: 157 FAIADEEQSK 166
             I +  + K
Sbjct: 187 MEILNNAEQK 196


>gi|323143387|ref|ZP_08078073.1| topoisomerase DNA-binding C4 zinc finger domain protein
           [Succinatimonas hippei YIT 12066]
 gi|322416835|gb|EFY07483.1| topoisomerase DNA-binding C4 zinc finger domain protein
           [Succinatimonas hippei YIT 12066]
          Length = 999

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 35/141 (24%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
           ++E  E  +  + T  ++L          + A AG+GKT ++V + L L++   A P  +
Sbjct: 180 YKEFFENAENYTLTVEQRLAVIRNNDYNLILAAAGTGKTSVIVAKALYLVVSKQAQPKDI 239

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L L + K AA E+  R+ E                                        L
Sbjct: 240 LILAYNKNAAEELRQRIKERAEKIE----------------------------------L 265

Query: 126 ETPGGLKVQTIHAFCEAIMQQ 146
           +      + T HA   +I+Q 
Sbjct: 266 DVTEDFNIFTFHALGRSIIQN 286


>gi|163748984|ref|ZP_02156235.1| superfamily I DNA and RNA helicase [Shewanella benthica KT99]
 gi|161331360|gb|EDQ02248.1| superfamily I DNA and RNA helicase [Shewanella benthica KT99]
          Length = 498

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
             S+Q   ++++    T  ++        +  V A AG+GKT  L  +   L+    A P
Sbjct: 177 LESYQTLFDSLEDNPLTPLQRQACVIDENNTLVIAGAGTGKTSTLAAKAAYLVKQGLAKP 236

Query: 63  STLLCLTHTKAAAAEMSHRVLEI-------ITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
           + +L L + K A  E+  RV+ I       ++ +  L  EI+ + + +        SD  
Sbjct: 237 NEILMLAYGKDAMVELKQRVVAIPGLNSVKVSTFHGLGKEIIQSYLDESSQVSVLASDTK 296

Query: 116 KARHLLITILET 127
           K    +   +E 
Sbjct: 297 KFTQFVDQQIEA 308


>gi|290508710|ref|ZP_06548081.1| ATP-dependent DNA helicase UvrD/PcrA [Klebsiella sp. 1_1_55]
 gi|289778104|gb|EFD86101.1| ATP-dependent DNA helicase UvrD/PcrA [Klebsiella sp. 1_1_55]
          Length = 605

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 42/158 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
           QL A        V A  GSGKT  LV ++ R+L  +   P    C+T+++  A E++ R+
Sbjct: 23  QLAAYHSRGHCVVLAGPGSGKTKTLVLKLARILAEDVEAPRGAACITYSQECARELTRRL 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +                            + +A +L            + T+H FC  
Sbjct: 83  EAL---------------------------GLREAPNLF-----------IGTVHGFCLR 104

Query: 143 -IMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTL 177
            ++  +   A++   F  ++A +  S++L+ ++     
Sbjct: 105 HLLMPYGRLADLPIPFPLSVASQRASERLLRQSGDRLF 142


>gi|300856009|ref|YP_003780993.1| putative helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436124|gb|ADK15891.1| putative helicase [Clostridium ljungdahlii DSM 13528]
          Length = 733

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 53/195 (27%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAW 89
             +  VSA  G+GKT I  Q V +++    + P  +L +T+  +A     +R+  ++   
Sbjct: 15  GGTMAVSAVPGAGKTFITAQLVCKIIEEKLNKPGKVLVVTYMNSAVNNFKNRISHMLEE- 73

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                              +++    +V TIH     ++Q+ P 
Sbjct: 74  ---------------------------------RGIDSNSDYEVMTIHGLAMKVLQERPD 100

Query: 150 EANITSHFAIADEEQSKKLIEEAK------------KSTLASIMLDNNEELKKAFY-EIL 196
            A +  +F + D+ Q    ++ A             +S L+       +E  + ++ + L
Sbjct: 101 AAGLDENFKVIDDLQKIFYLDNAVKIWRKLGGEKIYRSLLSEYGTKKYDEKSERWWKDFL 160

Query: 197 EISNDEDIETLISDI 211
           +IS     + LIS++
Sbjct: 161 QIS-----DVLISEL 170


>gi|118595078|ref|ZP_01552425.1| helicase IV [Methylophilales bacterium HTCC2181]
 gi|118440856|gb|EAV47483.1| helicase IV [Methylophilales bacterium HTCC2181]
          Length = 955

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
           ++   + I+    T+ ++        S  V A+AGSGKT +LV +V  L+    A    +
Sbjct: 190 YKVFFDKIESNPLTEEQRKAIISDEDSTLVIASAGSGKTSLLVGKVNYLIEKGFATEDQI 249

Query: 66  LCLTHTKAAAAEMSHRVLEI-ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           L L     A  E++ R+ EI I   +H           K   KK + +   ++  L    
Sbjct: 250 LVLAFNNNAKEEIATRLKEIKIVCETHTFHSFGLKVSAKAHKKKSSLASFIESNQLYYRF 309

Query: 125 LET 127
           ++ 
Sbjct: 310 IQN 312


>gi|33519733|ref|NP_878565.1| exonuclease V, beta chain [Candidatus Blochmannia floridanus]
 gi|33504078|emb|CAD83339.1| exonuclease V, beta chain [Candidatus Blochmannia floridanus]
          Length = 1208

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            + A AG+GKT+ L+   LRLLL                +L +T TK A   + +R+ E 
Sbjct: 16  LIEAPAGTGKTYNLIIIYLRLLLNLGTQTAFSKPLSTKNILIVTFTKTAVHNLKNRIKEN 75

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNK-SDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
           I  +    D I       I  K  ++  D++ + +LL    +      + TIH FC+ I+
Sbjct: 76  IRQFRL--DCIQGYSTNPIFSKLLSQIYDINLSINLLRIAEKEINQSAIFTIHGFCQKIL 133

Query: 145 QQFPLEANITSHFAIADE 162
            +  +E N+     I + 
Sbjct: 134 VENTIELNMLFDLTIIEN 151


>gi|288934511|ref|YP_003438570.1| UvrD/REP helicase [Klebsiella variicola At-22]
 gi|288889220|gb|ADC57538.1| UvrD/REP helicase [Klebsiella variicola At-22]
          Length = 605

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 42/158 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
           QL A        V A  GSGKT  LV ++ R+L  +   P    C+T+++  A E++ R+
Sbjct: 23  QLAAYHSRGHCVVLAGPGSGKTKTLVLKLARILAEDVEAPRGAACITYSQECARELTRRL 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +                            + +A +L            + T+H FC  
Sbjct: 83  EAL---------------------------GLREAPNLF-----------IGTVHGFCLR 104

Query: 143 -IMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTL 177
            ++  +   A++   F  ++A +  S++L+ ++     
Sbjct: 105 HLLMPYGRLADLPIPFPLSVASQRASERLLRQSGDRLF 142


>gi|332160569|ref|YP_004297146.1| exonuclease V subunit beta [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664799|gb|ADZ41443.1| exonuclease V subunit beta [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 1148

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 3/113 (2%)

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T+AA  E+  R+ + I          +S +    Q       D+S+A   L+    
Sbjct: 1   MVTFTEAATEELRGRIRDNIHELRIACVRGVSDDPMH-QALLAEIIDLSEAATDLLAAER 59

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                 + TIH FC+ ++     E+ I   F     +    L  +A       
Sbjct: 60  QMDEAAIYTIHGFCQRMLANNAFESGI--LFEQTLVQDELPLRRQACADFWRR 110


>gi|71280181|ref|YP_269170.1| helicase IV [Colwellia psychrerythraea 34H]
 gi|71145921|gb|AAZ26394.1| helicase IV [Colwellia psychrerythraea 34H]
          Length = 1042

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 62/147 (42%), Gaps = 15/147 (10%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP 62
             + +   + ++    T  ++        +  + A AG+GKT +++ R   LL +  A  
Sbjct: 205 LQTHEAFFDNVESNPLTLCQRRACIIDNDNNLLLAGAGTGKTSVMIGRTGYLLNSLQAKS 264

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITA---WSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             +L L + + AA EM  R+ + ++     +     +  + I +++G KP+ S ++    
Sbjct: 265 DEILLLAYGRKAANEMDERIRDKLSTDKISATTFHRLGLSIIAQVEGGKPSLSVLADDEK 324

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQ 146
                        +Q   ++ E ++++
Sbjct: 325 AKSK--------WIQ---SYFERLIKE 340


>gi|29348408|ref|NP_811911.1| helicase IV [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340312|gb|AAO78105.1| helicase IV [Bacteroides thetaiotaomicron VPI-5482]
          Length = 870

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 60/190 (31%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K ++        +  V ++AGSGKT  +V +V  L  + +  P  +L +++T  AAAE+
Sbjct: 158 DKQQRRSIVSEEDNCLVVSSAGSGKTSSIVGKVKYLTEIKDIAPHRILLISYTNKAAAEL 217

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + R+                                               GLK  T H 
Sbjct: 218 TERM--------------------------------------------ATNGLKGYTFHK 233

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196
               I+++   E  +    +I D   +  L  +   + L       NE+ KK+  E    
Sbjct: 234 LAIDIIEK---ETGVKP--SICDNTDA--LFIDIYHTLL------GNEDFKKSVVEYFID 280

Query: 197 EISNDEDIET 206
             +N+ D E 
Sbjct: 281 YQTNEADWEQ 290


>gi|296113149|ref|YP_003627087.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis RH4]
 gi|295920843|gb|ADG61194.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis RH4]
          Length = 1315

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 36/184 (19%)

Query: 19  QTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
              SEQ+ A      ++  + A+AG+GKT  L   +LRLL+     P  ++  T T+AAA
Sbjct: 13  PKPSEQIAALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATTFTRAAA 72

Query: 76  AEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKA------------RHL 120
           AEM  R+ E + ++  L      +LS +        P +  ++ A             HL
Sbjct: 73  AEMQERISERLHSFYGLMRWLQGMLSTQPEWFNQTAPIEQIITYADQAGYDAADPINEHL 132

Query: 121 LITILE------------------TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
           L  IL                   +   L V T+ +  +  + +F  +    S   I + 
Sbjct: 133 LRFILSQKATFLNEVVYRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSGMEILNN 192

Query: 163 EQSK 166
            + K
Sbjct: 193 AEQK 196


>gi|189467293|ref|ZP_03016078.1| hypothetical protein BACINT_03679 [Bacteroides intestinalis DSM
           17393]
 gi|189435557|gb|EDV04542.1| hypothetical protein BACINT_03679 [Bacteroides intestinalis DSM
           17393]
          Length = 871

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K ++        +  V ++AGSGKT  ++ +V  L  +    P  +L +++T  AAAE+
Sbjct: 159 DKQQRRSIVSEEDNCLVVSSAGSGKTSSIIGKVKYLTEIKGIAPHRILLISYTNKAAAEL 218

Query: 79  SHR 81
           + R
Sbjct: 219 TER 221


>gi|288929578|ref|ZP_06423422.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329083|gb|EFC67670.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 900

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 48/185 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            S T       +S+Q + +       V A  G GKT IL +RV        + + +LCLT
Sbjct: 1   MSNTTQAWQPDESQQRVINLQQGIHLVLAPPGCGKTQILTERVRLARKNGVNYADMLCLT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA  M  R+   I       D++ +AE+                            
Sbjct: 61  FTNRAARGMVERIKANI-------DDVAAAEVY--------------------------- 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              V  +H FC   +    L   I +  ++ D++ +         S LA    ++  ++ 
Sbjct: 87  ---VGNVHRFCSRFLYDNGL---IAAETSVIDDDDAL--------SILARYTEEDEMKVA 132

Query: 190 KAFYE 194
           ++F  
Sbjct: 133 ESFKR 137


>gi|318606956|emb|CBY28454.1| exodeoxyribonuclease V beta chain; RecB [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 1148

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 3/113 (2%)

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T+AA  E+  R+ + I          +S +    Q       D+S+A   L+    
Sbjct: 1   MVTFTEAATEELRGRIRDNIHELRIACVRGVSDDPMH-QALLAEIIDLSEAATDLLAAER 59

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                 + TIH FC+ ++     E+ I   F     +    L  +A       
Sbjct: 60  QMDEAAIYTIHGFCQRMLANNAFESGI--LFEQTLVQDELPLRRQACADFWRR 110


>gi|292487874|ref|YP_003530749.1| DNA helicase IV [Erwinia amylovora CFBP1430]
 gi|292899099|ref|YP_003538468.1| helicase IV [Erwinia amylovora ATCC 49946]
 gi|291198947|emb|CBJ46057.1| putative helicase IV [Erwinia amylovora ATCC 49946]
 gi|291553296|emb|CBA20341.1| DNA helicase IV [Erwinia amylovora CFBP1430]
          Length = 684

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
             S+     +   +  V A AGSGKT +LV R   L++   A    +L L   + AA EM
Sbjct: 198 NASQARSVVNGEDAVLVLAGAGSGKTSVLVARAGWLMMRRQASAGQILLLAFGRQAAEEM 257

Query: 79  SHRVLEIITA-------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
             R+   + A       +  L+  I+     K       ++D  K + LLI  
Sbjct: 258 DDRIRARLGAEDLQARTFHALALHIIRQGSNKSPTISRLETDTDKRQSLLINA 310


>gi|293368534|ref|ZP_06615142.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
 gi|292636331|gb|EFF54815.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
          Length = 872

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K ++        +  V ++AGSGKT  +V +V  L  +    P  +L +++T  AAAE+
Sbjct: 160 DKQQRRSIVSEEDNCLVVSSAGSGKTSSIVGKVKYLTEIKGIVPHRILLISYTNKAAAEL 219

Query: 79  SHR 81
           + R
Sbjct: 220 TER 222


>gi|325279852|ref|YP_004252394.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
 gi|324311661|gb|ADY32214.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
          Length = 872

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
            K ++        +  V ++AGSGKT  +V +V  L  +    P  +L +++T  AAAE+
Sbjct: 160 DKQQRRSIVSEEDNCLVVSSAGSGKTSSIVGKVKYLTEIKGIVPHRILLISYTNKAAAEL 219

Query: 79  SHR 81
           + R
Sbjct: 220 TER 222


>gi|237809167|ref|YP_002893607.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237501428|gb|ACQ94021.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 604

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 42/160 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
           QL A +      V A  GSGKT  LV ++ R+L  +   P    C+T+++  A E++ R+
Sbjct: 23  QLAAYNSQGHCVVLAGPGSGKTKTLVLKLARILAEDVQAPRGAACITYSQECARELTRRL 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +                            + +A +L            + T+H FC  
Sbjct: 83  EML---------------------------GLREAPNLF-----------IGTVHGFCLR 104

Query: 143 -IMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLAS 179
            ++  +   A++   F  ++A +  S +LI ++      +
Sbjct: 105 HLLMPYGRLADLPIQFPLSVASQRVSDRLIRQSGDELFGA 144


>gi|121583328|ref|YP_973764.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120596586|gb|ABM40022.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 914

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66
           +E  ++++    T  +            + A+AGSGKT  +V +    L         +L
Sbjct: 201 KEFFDSVEKSPLTDEQAKAVVCFDNRVLLVASAGSGKTSTMVAKAGYALKMGYCEADRML 260

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK---------------IQGKKPNK 111
            L     AAAE+  R+ + +      +D++++                    +     N 
Sbjct: 261 LLAFNNDAAAELRQRIQDRLGPLGLPADKVVAKTFHAFGLDVIGLATGKRPSLAPWVENG 320

Query: 112 SDMSKARHLLITILETPGGLKVQ 134
            D+ +   ++  + +   G ++ 
Sbjct: 321 KDLEQLMAIVDDLKDRDTGFRIS 343


>gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 900

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 48/185 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
              TI      +S+Q + +       V A  G GKT IL +RV        + + +LCLT
Sbjct: 1   MPNTIQAWQPDESQQRVINLQQGIHLVLAPPGCGKTQILTERVRLARKNGVNYADMLCLT 60

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T  AA  M  R+   I       D++ +AE+                            
Sbjct: 61  FTNRAARGMVERIKANI-------DDVAAAEVY--------------------------- 86

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
              V  +H FC   +    L   I +  ++ D++ +         S LA    ++  ++ 
Sbjct: 87  ---VGNVHRFCSRFLYDNGL---IAAETSVIDDDDAL--------SILARYTEEDEMKVA 132

Query: 190 KAFYE 194
           ++F  
Sbjct: 133 ESFKR 137


>gi|302670129|ref|YP_003830089.1| UvrD/REP family ATP-dependent DNA helicase [Butyrivibrio
           proteoclasticus B316]
 gi|302394602|gb|ADL33507.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 739

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 6/136 (4%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
             +EQL+A         + A  GSGKT +LV R+  +L +    P  +L LT+T AA  +
Sbjct: 18  LNNEQLMAVRTIEGPVLLLAVPGSGKTTVLVNRLGYMLSVKGIAPENILTLTYTVAATRD 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R   +      ++  +    I  I  K  +       +     I +     K+ T  
Sbjct: 78  MARRFEALFGK--EMAQGLEFRTINGICAKIISHYGRLIGKKSFDLITDEKVSGKILT-- 133

Query: 138 AFCEAIMQQFPLEANI 153
                + +++P E++I
Sbjct: 134 DLYVKVCREYPTESDI 149


>gi|302671265|ref|YP_003831225.1| UvrD/REP family ATP-dependent DNA helicase [Butyrivibrio
           proteoclasticus B316]
 gi|302395738|gb|ADL34643.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 603

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 67/199 (33%), Gaps = 44/199 (22%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSH 91
             V A AG GKT  LV ++  ++   + P    +L LT +  AA +M   + + +     
Sbjct: 30  IIVEAPAGCGKTTTLVSKIAYMIATKSFPQNKKVLALTFSVNAAYKMKKDLADKLPEMGL 89

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L                   +D+++              + +   H  C  I+  +    
Sbjct: 90  LDIR--------------EPADLNR-------------RMFISNYHGLCRRILSLYGYLI 122

Query: 152 NITSH------FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205
           N          F    E  +K          L+   +D +E   +   +  +  ++ D E
Sbjct: 123 N--PALKEINMFKAIGESDAK------FDEFLSGEEIDLSEAQLEIVKKFGQAVSECDEE 174

Query: 206 TLISDIISNRTALKLIFFF 224
           TL + + +    + ++ F 
Sbjct: 175 TLKNSL-NQYNEILILKFI 192


>gi|284097277|ref|ZP_06385418.1| helicase IV [Candidatus Poribacteria sp. WGA-A3]
 gi|283831213|gb|EFC35182.1| helicase IV [Candidatus Poribacteria sp. WGA-A3]
          Length = 893

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 1/123 (0%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           +  E ++    T  ++  A        + A+AG GKT  +V ++   L  N   PS ++ 
Sbjct: 164 DFFERVEKNPLTNEQRRAAIVMEDHHLLIASAGCGKTSAIVGKIGYALKKNFCAPSQIVT 223

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           L   K AA E+  R+ E +   +    ++ +     +Q     K    +     + + E 
Sbjct: 224 LAFNKNAANELRQRINERLGDLNGHEIKVETFHALGLQFISEAKGIKPRVADWAVNLGEN 283

Query: 128 PGG 130
           PG 
Sbjct: 284 PGQ 286


>gi|218659262|ref|ZP_03515192.1| UvrD/REP helicase [Rhizobium etli IE4771]
          Length = 395

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTL 65
           F+   + ID  S +  ++        +  + A+AGSGK+  +V +V  +L      P  +
Sbjct: 184 FKHFFDHIDGRSLSDQQREACIRLEDNNLLVASAGSGKSATMVGKVAYVLEKKLYRPDEI 243

Query: 66  LCLTHTKAAAAEMSHRVLEIIT 87
           L L   K+AA E+  R+   + 
Sbjct: 244 LLLAFNKSAAEELRTRIARQLR 265


>gi|291556316|emb|CBL33433.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum V10Sc8a]
          Length = 767

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 49/227 (21%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
            +++   +Q  A      +  + A  GSGKT +L+ R+  ++      PS +L +T+T+A
Sbjct: 10  FMAEMSEQQNTAVKAVQGAVLLLAVPGSGKTTVLITRLGYMINCCGISPSEILAVTYTRA 69

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A  E+  R  +   +                                     E   GL++
Sbjct: 70  ATLELKKRFADRFGS-------------------------------------ECGAGLEI 92

Query: 134 QTIHAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           +TI+     I++ F     + N+    +   E   K+LI E  +                
Sbjct: 93  RTINGLSAKIIEYFSTVYTDENVPHLMSR--EGDRKRLISEVYRLVTGEFADTATINDIG 150

Query: 191 AFYEILE--ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           A     +  + +DE+IE L     S    L++   +   L  R +++
Sbjct: 151 AMITFAKNMMLSDEEIEALSG---SGYDTLRIYREYNLALSSRSLMD 194


>gi|93007184|ref|YP_581621.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
 gi|92394862|gb|ABE76137.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
          Length = 955

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 54/224 (24%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70
           ++++    T  ++L          V A AG+GKT ++V + L L+    A P  +L L +
Sbjct: 186 DSVESNPLTDEQRLGVLRSNDKNMVLAAAGTGKTSVIVAKALDLIDRGLAAPQEILVLAY 245

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            K+AA E+  R+ +                               KA +  I + E+P  
Sbjct: 246 NKSAAEELKKRLAD-------------------------------KAENSGIVLTESP-- 272

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--EL 188
            ++ T HA    I+     ++ I+++ ++  E  S KL     +  +  +  D     + 
Sbjct: 273 -QISTFHALGRKILG----DSGISTYMSVFTE-DSLKLGAWVTEWLIEYLTQDPKRMVDF 326

Query: 189 KKAF------------YEILEISNDEDIETLISDIISNRTALKL 220
              F             E      D +  TL  +++     L++
Sbjct: 327 ISLFPEPVNPFDFKTQEEYERHIRDNEFRTLQGELVKGYQELRI 370


>gi|294140890|ref|YP_003556868.1| UvrD/REP helicase family protein [Shewanella violacea DSS12]
 gi|293327359|dbj|BAJ02090.1| UvrD/REP helicase family protein [Shewanella violacea DSS12]
          Length = 1018

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
             ++Q   ++++    T  ++        +  V A AG+GKT  +  +   L+    A P
Sbjct: 177 LEAYQTLFDSLEAHPLTDLQRQACVIDENNTLVIAGAGTGKTSTMAAKAAYLVKQGLAKP 236

Query: 63  STLLCLTHTKAAAAEMSHRVLEI-------ITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
             +L L + K A  E+  RV  I       ++ +  L  EI+ + + +        SD  
Sbjct: 237 DEILMLAYGKDAMVELKQRVYTIPGLNSVKVSTFHGLGKEIIQSYLDESTQVSVLASDTK 296

Query: 116 KARHLLITILET 127
           K    +   L+ 
Sbjct: 297 KFTQFVDQQLDA 308


>gi|262189623|ref|ZP_06048012.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
 gi|262034497|gb|EEY52848.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
          Length = 471

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 37 SANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           A AGSGKT +L  RV  LL ++ A P  +L +   + AA EM+ R+   I   + 
Sbjct: 2  LAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERLKNKIGLEAE 57


>gi|312171996|emb|CBX80253.1| DNA helicase IV [Erwinia amylovora ATCC BAA-2158]
          Length = 684

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
             S+     +   +  V A AGSGKT +LV R   L++   A    +L L   + AA EM
Sbjct: 198 NASQARSVVNGEDAVLVLAGAGSGKTSVLVARAGWLMMRRQASAGQILLLAFGRQAAEEM 257

Query: 79  SHRVLEIITA-------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
             R+   + A       +  L+  I+     K       ++D  K + LLI  
Sbjct: 258 DDRIRARLGAEDLQARTFHALALHIICQGSNKSPTISRLETDTDKRQSLLINA 310


>gi|311063890|ref|YP_003970615.1| DNA helicaseII-like protein [Bifidobacterium bifidum PRL2010]
 gi|310866209|gb|ADP35578.1| DNA helicaseII-like protein [Bifidobacterium bifidum PRL2010]
          Length = 499

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
            ++ +   +   + A D      + A AG+GKT  + +R+             +L +T +
Sbjct: 8   ILEGLDDAQMSAVTALD--GPVRIIAGAGAGKTRTVTRRIAYACARGDWDARKVLAVTFS 65

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             AAAEM  R+  +       +    SA + +++
Sbjct: 66  VKAAAEMRARLQTLGVGDDVTAATFHSAALQQLR 99


>gi|224282555|ref|ZP_03645877.1| DNA helicase II [Bifidobacterium bifidum NCIMB 41171]
 gi|310287017|ref|YP_003938275.1| DNA helicase II containing UvrD/REP helicase domain
           [Bifidobacterium bifidum S17]
 gi|309250953|gb|ADO52701.1| DNA helicase II containing UvrD/REP helicase domain
           [Bifidobacterium bifidum S17]
          Length = 499

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
            ++ +   +   + A D      + A AG+GKT  + +R+             +L +T +
Sbjct: 8   ILEGLDDAQMSAVTALD--GPVRIIAGAGAGKTRTVTRRIAYACARGDWDARKVLAVTFS 65

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             AAAEM  R+  +       +    SA + +++
Sbjct: 66  VKAAAEMRARLQTLGVGDDVTAATFHSAALQQLR 99


>gi|310658483|ref|YP_003936204.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519]
 gi|308825261|emb|CBH21299.1| putative ATP-dependent DNA helicase [Clostridium sticklandii]
          Length = 599

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 40/128 (31%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
            ++      +  A V A  G GKT ++ +R+  ++ + N  P +++ L+ T+ +++E+  
Sbjct: 4   EQKEAIYHSSGPALVIAGPGCGKTSVITERIYNMVNVLNIDPKSIVALSFTRYSSSELKQ 63

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R        + + D  L                               G +   TIH+F 
Sbjct: 64  R--------TIIKDSCL-------------------------------GSVFFGTIHSFF 84

Query: 141 EAIMQQFP 148
            +I++ + 
Sbjct: 85  LSILKDYF 92


>gi|313139710|ref|ZP_07801903.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132220|gb|EFR49837.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 502

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71
            ++ +   +   + A D      + A AG+GKT  + +R+             +L +T +
Sbjct: 11  ILEGLDDAQMSAVTALD--GPVRIIAGAGAGKTRTVTRRIAYACARGDWDARKVLAVTFS 68

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             AAAEM  R+  +       +    SA + +++
Sbjct: 69  VKAAAEMRARLQTLGVGDDVTAATFHSAALQQLR 102


>gi|254520117|ref|ZP_05132173.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
 gi|226913866|gb|EEH99067.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
          Length = 663

 Score = 68.8 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
           K ++       ++  V A  GSGKT +++ RV  L+         ++ +T T+AAA  M
Sbjct: 6  DKYQKEAVYIKEKNVLVVAAPGSGKTTVIINRVNYLVNELKVRLGNIIIITFTRAAADNM 65

Query: 79 SHR 81
           +R
Sbjct: 66 RNR 68


>gi|146308253|ref|YP_001188718.1| UvrD/REP helicase [Pseudomonas mendocina ymp]
 gi|145576454|gb|ABP85986.1| UvrD/REP helicase [Pseudomonas mendocina ymp]
          Length = 628

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGK+  LV RV+ LL      P  L  ++ T A+ AE+  R+  ++  W +  D
Sbjct: 118 IFAGAGSGKSSTLVLRVVFLLCHQEVDPKRLTVISFTNASCAELRERLQRLLGFWHYPHD 177

Query: 95  EILSAEITKIQGKKPNKSDMSKAR 118
                           K D+   R
Sbjct: 178 ARQCVRTFHAAMATLAKEDLGNPR 201


>gi|259908878|ref|YP_002649234.1| DNA helicase IV [Erwinia pyrifoliae Ep1/96]
 gi|224964500|emb|CAX56010.1| Helicase IV [Erwinia pyrifoliae Ep1/96]
 gi|283478871|emb|CAY74787.1| DNA helicase IV [Erwinia pyrifoliae DSM 12163]
          Length = 684

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
             S+     +   +  V A AGSGKT +LV R   L++   A+   LL L   + AA EM
Sbjct: 198 NASQARSVVNGEDAVLVLAGAGSGKTSVLVARAGWLMMRRQANAGQLLLLAFGRQAAEEM 257

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + R+   +      +    +  +  IQ        +S+
Sbjct: 258 NDRIRARLGTEDLQARTFHALALHIIQQAGNKSPAISR 295


>gi|325914701|ref|ZP_08177042.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539203|gb|EGD10858.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
           35937]
          Length = 584

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 4/120 (3%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++  + + + AS     A + A  GSGKT +L  R   LL  +   S LL +T T AAA
Sbjct: 1   MLNPGQQQAVRAS---GHAMICACPGSGKTTVLKFRASHLLELD-PASRLLAVTFTSAAA 56

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            E+  R+                  + K Q ++  K    KA+     +      +  QT
Sbjct: 57  GELEERIRSQNPKLGDRLVCGTFHSLAKRQLERSGKRVNLKAQAAGAIMRSAYSEVVTQT 116


>gi|84387388|ref|ZP_00990408.1| helicase IV [Vibrio splendidus 12B01]
 gi|84377837|gb|EAP94700.1| helicase IV [Vibrio splendidus 12B01]
          Length = 962

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 72/221 (32%), Gaps = 60/221 (27%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + ++    T+ +++       +  + A AG+GKT ++V R   L+    A  + +L L +
Sbjct: 183 DNVESNPLTEKQRIACITDNDNNLLLAGAGTGKTSVMVGRTGYLINSDQATANDILLLAY 242

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            + AA EM  R+ + +                                            
Sbjct: 243 GRIAAKEMDERIKDKLG----------------------------------------FDD 262

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEE-----------QSKKLIEEAKKSTLAS 179
           ++  T H+    I+           + ++ +++             + ++++  + +L  
Sbjct: 263 VRASTFHSLGMKII---AEVEGSKPNLSLFEDDIKAKSKWMNDNLEQLMLDDGYRESLLE 319

Query: 180 IMLDNNEELKKAFY-----EILEISNDEDIETLISDIISNR 215
                    K  F      E L+   D DI +L  D + + 
Sbjct: 320 YFSSYYFVDKNPFEFQSEGEYLQYLTDNDIRSLKGDQVKSY 360


>gi|149920859|ref|ZP_01909321.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149818258|gb|EDM77711.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 1100

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 24/115 (20%)

Query: 48  LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK 107
           +  RVL LL+       +  +T T+ AA E+  RV + +                     
Sbjct: 1   MTDRVLELLVHGTPAGRIAAITFTEKAAGELQARVRDAL--------------------- 39

Query: 108 KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
              +  ++  RHL   +L     L++ TIH FC+ ++     +A       +  +
Sbjct: 40  ---EHHLAAGRHLPEGLLAELSSLELSTIHGFCQRLLTAESFDAAWAPDTEVLPD 91


>gi|149909084|ref|ZP_01897742.1| hypothetical helicase IV [Moritella sp. PE36]
 gi|149807835|gb|EDM67780.1| hypothetical helicase IV [Moritella sp. PE36]
          Length = 730

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 78/210 (37%), Gaps = 26/210 (12%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAH 61
           +   ++   + ++    T+ ++        +  V A AG GKT +++ R   LL    A 
Sbjct: 179 HKERYKSLFDGLERHPLTEQQRDACIVANDANLVLAGAGCGKTSVMLGRCAYLLESQQAT 238

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
             ++L L   K AA EM  R+ E +           +  +  I+     +  +SK     
Sbjct: 239 ADSILILAFAKDAAQEMKTRLAERLPNAKITVKTFHALALDIIKQVDNERPKVSK----- 293

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE--QSKKLIEEAKKSTLAS 179
              L +    K Q    F + I+              + D++  + + L +E   +   +
Sbjct: 294 ---LASSDSAKQQ----FFKQIIST-----------RLLDKKLLEKELLDKELLDTNFNN 335

Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLIS 209
           +  +          ++ +  +D +++ L++
Sbjct: 336 LFSEYCYAYVAWLGKLPDDKHDAEVKRLLA 365


>gi|227501205|ref|ZP_03931254.1| ATP-dependent DNA helicase [Anaerococcus tetradius ATCC 35098]
 gi|227216606|gb|EEI82010.1| ATP-dependent DNA helicase [Anaerococcus tetradius ATCC 35098]
          Length = 851

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 17/177 (9%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81
           ++ +  +    A V A  G+GKTH +V  V   +       + +L  T TK AA E++ R
Sbjct: 6   QEEIIKNAKLPAVVIAGPGTGKTHTIVNFVAEAIKNERFKANKILITTFTKKAAHELNTR 65

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++  +       +E L  ++  +     +   M         + +    LK+  I +F E
Sbjct: 66  IITRLK------EEGLRVDLKDMMIGNFHSLAMDFI-TKYRRLDQNFFNLKI--IDSFME 116

Query: 142 A-IMQQF-PLEANITSHFA--IADEEQSKKL--IEEAKKSTLASIMLDNNEELKKAF 192
             I+++   L   +  +F   I  +E +  L   +      L    L N+E  K   
Sbjct: 117 EFIVRENLSLFKGLD-NFDSFIKKDEVATILDIFQTIINQVLDLDELKNSENPKDRL 172


>gi|167749801|ref|ZP_02421928.1| hypothetical protein EUBSIR_00769 [Eubacterium siraeum DSM 15702]
 gi|167657284|gb|EDS01414.1| hypothetical protein EUBSIR_00769 [Eubacterium siraeum DSM 15702]
          Length = 767

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73
           +++   +Q  A      +  + A  GSGKT +L+ R+  ++      PS +L +T+T+A
Sbjct: 10 FMAEMSEQQNTAVKAVQGAVLLLAVPGSGKTTVLITRLGYMINCCGISPSEILAVTYTRA 69

Query: 74 AAAEMSHRVLEIITAWSHLSDEI 96
          A  E+  R  +   +      EI
Sbjct: 70 ATLELKKRFADRFGSECGAGLEI 92


>gi|126443338|ref|YP_001061045.1| UvrD/REP helicase [Burkholderia pseudomallei 668]
 gi|126222829|gb|ABN86334.1| UvrD/REP helicase [Burkholderia pseudomallei 668]
          Length = 599

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 40/136 (29%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEM 78
              +Q  A +      V A  GSGKT  LV ++ R+L  +   P  + C+T+++  A E+
Sbjct: 19  DNDQQWAAYESEWHCVVLAGPGSGKTKTLVLKLARILAEDVRTPRGVACITYSQECAREL 78

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + R+ ++                                       L     L + T+H 
Sbjct: 79  TRRLEQL--------------------------------------GLRESSRLFIGTVHG 100

Query: 139 FCEA-IMQQFPLEANI 153
           FC   ++  +   AN+
Sbjct: 101 FCLRHLLMPYAHLANL 116


>gi|109898585|ref|YP_661840.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
 gi|109700866|gb|ABG40786.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
          Length = 957

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-A 60
           ++ + FQ     ++    T  ++        +  + A AG+GKT ++V R   LL +  A
Sbjct: 227 LHADFFQR----VESNPLTDKQRRACIIDDDNNLLLAGAGTGKTSVMVGRAGYLLTSGQA 282

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            P  +L L + + AA E+  R+   +   S
Sbjct: 283 KPDDILLLAYGQKAATEIDERIKHKLDGQS 312


>gi|28210435|ref|NP_781379.1| ATP-dependent nuclease subunit A [Clostridium tetani E88]
 gi|28202872|gb|AAO35316.1| ATP-dependent nuclease subunit A [Clostridium tetani E88]
          Length = 1147

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           +++      +I   F +ADE ++  L +EA +    ++  D N      F E+L     +
Sbjct: 1   MIRNNFHIIDIDPTFRVADETETILLKQEALEEVFENVYYDGN--YTDEFKELLNSFGGK 58

Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
           D   L S+++ N     L  F  S  W  K + + +   
Sbjct: 59  DDRKL-SELVQN-----LYNFSQSLSWPFKWLNEKVEGF 91


>gi|310767223|gb|ADP12173.1| DNA helicase IV [Erwinia sp. Ejp617]
          Length = 684

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78
             S+     +   +  V A AGSGKT +LV R   L++   A+   LL L   + AA EM
Sbjct: 198 NASQARSVVNGEDAVLVLAGAGSGKTSVLVARAGWLMMRRQANAGQLLLLAFGRQAAEEM 257

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + R+   +      +    +  +  IQ        +S+
Sbjct: 258 NDRIRARLGTEDLQARTFHALALHIIQQGSNKSPAISR 295


>gi|301597911|ref|ZP_07242919.1| UvrD/REP helicase [Acinetobacter baumannii AB059]
          Length = 427

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 47/221 (21%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
           +   EQ  A +      V A  GSGKT  L   + R L     +P  + C+T+    A E
Sbjct: 15  EKNEEQFAAVNCRNHCVVLAGPGSGKTKTLTTAIARTLHEEIINPRAIACITYNNECAIE 74

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++                                       +E      + T+H
Sbjct: 75  LEGRLSKL--------------------------------------GIENNSQNFIGTVH 96

Query: 138 AFCE-AIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           +F    I+  +       + + F IA++ +    +E A K+       ++  +    +  
Sbjct: 97  SFALTQIIVPYARCLQGLLPNDFKIANKNECNLAVENAYKAI-----YNDGGDPHAQWEF 151

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             E  N E   T  +    N+   + I  + S L ++ +I+
Sbjct: 152 AKEKRNREVDRTHPAWKGHNKELAEFIEEYESELRKKGLID 192


>gi|261866840|ref|YP_003254762.1| helicase IV [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412172|gb|ACX81543.1| helicase IV [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 955

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 41/186 (22%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66
               + I+    T+ ++L          V A AG+GKT ++V + L L+ +       +L
Sbjct: 186 NHFFDVIESNPLTQQQRLAVIRNNDINMVLAAAGTGKTSVMVAKALDLIDSGVATSEEIL 245

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            L + K AA E++ R+                                ++A    + + E
Sbjct: 246 ILAYNKDAATELTERLE-------------------------------ARAEAANLDLSE 274

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
           +P    + T HA    I++       ++  FA    E S KL +E     L + + ++ +
Sbjct: 275 SPS---ISTFHALGRNIIKSCGKSVRLS-KFA----EDSAKL-DEWFTKWLENYIQEDPD 325

Query: 187 ELKKAF 192
            L    
Sbjct: 326 NLLSFI 331


>gi|261820936|ref|YP_003259042.1| UvrD/REP helicase [Pectobacterium wasabiae WPP163]
 gi|261604949|gb|ACX87435.1| UvrD/REP helicase [Pectobacterium wasabiae WPP163]
          Length = 606

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 42/160 (26%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
           QL A +      V A  GSGKT  LV ++ R+L  +   P    C+T+++  A E++ R+
Sbjct: 23  QLAAYNSLGHCVVLAGPGSGKTKTLVLKLARILAEDVQAPRGAACITYSQECARELTRRL 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +                                       L     L V T+H FC  
Sbjct: 83  EAL--------------------------------------GLRDAPNLFVGTVHGFCLR 104

Query: 143 -IMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLAS 179
            ++  +   A++   F  ++A +  S +L+ ++      S
Sbjct: 105 HLLMPYGRLADLPISFPLSVASQRVSDRLLRQSGDRLFGS 144


>gi|308272255|emb|CBX28861.1| hypothetical protein N47_B20070 [uncultured Desulfobacterium sp.]
          Length = 1762

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 6    SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64
            S   +   ++ +     E ++ S P  +  + A  GSGKT +++ R   LL +    P +
Sbjct: 1106 SAASYGRIVESLKNPIQESIVCSSPEDNILILAGPGSGKTTVVIHRCAYLLRVERVPPGS 1165

Query: 65   LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK---PNKSDMSKARHLL 121
            +L L    +AA  +  R+ ++I + +     +    +      +    N S +SK +  L
Sbjct: 1166 ILALCFNHSAALSIRKRLWDLIGSEARDVTVLTYHALAMRIAGRSFAQNDSAISKDKESL 1225

Query: 122  ITILET 127
                E 
Sbjct: 1226 TKAFED 1231


>gi|289667696|ref|ZP_06488771.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 217

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 51/169 (30%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA-EMSHRVLEIITAWSHL 92
            + A+AG+GKT  L     RL++        +L +T T++A           ++ A S +
Sbjct: 20  LIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTESATQELRRRIRERLVLAASLV 79

Query: 93  SDEILSAEITKIQGKKPNKSDMSKA-------------------------------RHLL 121
            D  + A +   +       D   A                               R +L
Sbjct: 80  PDAPVGAALAATEWSATQPPDAPSASVGAAPAAAELADDPSQPRPLLHEAPDALLTRAIL 139

Query: 122 ITIL----ETPGGLK--------------VQTIHAFCEAIMQQFPLEAN 152
            T L    ETP  L+              V TIH FC  ++++  LE+ 
Sbjct: 140 ATHLAGGNETPAALRRRLQQAVEEIDLAAVFTIHGFCARVLREHALESG 188


>gi|326795157|ref|YP_004312977.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
 gi|326545921|gb|ADZ91141.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
          Length = 779

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 82/239 (34%), Gaps = 53/239 (22%)

Query: 10  HSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            +E    +  T  +  +     +  A V A AG+GKT  L++R+  LLL    P  +   
Sbjct: 3   DNEMTAALGFTTEQSAVVEHNLSGHAKVVAVAGAGKTSTLIERIKALLLKGVRPEQIGVF 62

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
              K+A  E S R+   +                                     ++E+ 
Sbjct: 63  MFNKSAQEEFSSRMYAQLNG-----------------------------------VMESA 87

Query: 129 GGLKVQTIHAF----CEAIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLAS---- 179
               V T H+F    C  + ++      + S    + DE    KLI EA+ + +      
Sbjct: 88  RLPDVMTFHSFGMRLCNRLERK-----GVLSQAKLVTDEFSFVKLIREARNNLIRQGEEI 142

Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDII---SNRTALKLIFFFFSYLWRRKIIE 235
            + D  + L+ A      +    + E ++ + +   ++R     +F     L +R  I 
Sbjct: 143 TLQDERDWLEDALLYFDYVKASVESEDVVYENLKWSADRRFFPKLFIEVEKLRKRSNIR 201


>gi|218510630|ref|ZP_03508508.1| superfamily I DNA/RNA helicase [Rhizobium etli Brasil 5]
          Length = 322

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTL 65
           ++   + +D  S +  ++        +  + A+AGSGK+  +V +V  +L      P  +
Sbjct: 167 YRSFFDDLDGRSLSDQQREACIRLEDNNLLVASAGSGKSATMVGKVAYVLDKQLYRPEEI 226

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L L   K+AA E+  R+   +       D           G+   +    +   L   + 
Sbjct: 227 LVLAFNKSAADELKERIARQMA--VDPDDLESKVTTFHALGRGIIEEVEGRPPQLADWVE 284

Query: 126 ETPGGLKV 133
              G  K+
Sbjct: 285 HPAGEAKI 292


>gi|313887953|ref|ZP_07821632.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846119|gb|EFR33501.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 619

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 40/136 (29%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ T S+          A V A  G+GKT +++ R  +L+     P ++L +T +KA A 
Sbjct: 1   MNLTPSQLKAVDHFEGPAIVLAVPGAGKTTMILYRTKKLIERGVDPKSILTITFSKAQAV 60

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++ +R + +    +                                            TI
Sbjct: 61  DIKNRFVGMDGDRTVHF----------------------------------------STI 80

Query: 137 HAFCEAIMQQFPLEAN 152
           HAFC +I++ +  ++ 
Sbjct: 81  HAFCYSIVRDYSKKSG 96


>gi|148643831|ref|YP_001274344.1| UvrD/REP family DNA helicase [Methanobrevibacter smithii ATCC
           35061]
 gi|148552848|gb|ABQ87976.1| DNA helicase, UvrD/REP helicase family [Methanobrevibacter smithii
           ATCC 35061]
          Length = 610

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 87/230 (37%), Gaps = 33/230 (14%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           +T++       +++     +++  + A AG+GKT  L+ ++  L+   +  P  +LCL+ 
Sbjct: 96  KTVNSKPLDTQQKIACVLDSKNVQIIAGAGTGKTFTLIAKIKYLIAKKHVRPEDILCLSF 155

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           +  +  ++  ++ E +   +          + +   K+ +K  + +   +L  I +    
Sbjct: 156 SNTSVRDLKGKLPENVEIRTF-------HSLGRSVIKQHHKVSVIENNEILAIINDYLAN 208

Query: 131 LKVQT---IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--------AKKSTLAS 179
               T   I  FC++         NI S   I      K+L+ E        A K  LA 
Sbjct: 209 ANTDTLKDILEFCDS------YFLNIES--YIIRRNDRKELLNELKEAFTKVAFKPLLAD 260

Query: 180 -IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
            I L       K ++     SND+    +   I  +        ++  YL
Sbjct: 261 FINLFKGNNFTKDYFSYFRSSNDDKDHDIFLKIAED-----FYSYYQKYL 305


>gi|262275997|ref|ZP_06053806.1| DNA helicase IV [Grimontia hollisae CIP 101886]
 gi|262219805|gb|EEY71121.1| DNA helicase IV [Grimontia hollisae CIP 101886]
          Length = 694

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 47/150 (31%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77
                Q +  D   +  + A AGSGKT +L+ R   L+      PS +L L   K A+ E
Sbjct: 201 NASQRQAVLMDDNHNLLL-AGAGSGKTSVLMARAQYLVASQQTEPSRILMLAFGKKASEE 259

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M+ R+ +                                             G++  T H
Sbjct: 260 MAGRLEKA-----------------------------------------GLHGVETSTFH 278

Query: 138 AFCEAIMQQFP-LEANITSHFAIADEEQSK 166
           AF   ++++    EA +     +A +E++K
Sbjct: 279 AFALKVIREISGQEAKVAP---LATDEEAK 305


>gi|256751131|ref|ZP_05492013.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750037|gb|EEU63059.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 206

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
             ++  +F I D+ ++  L  EA +     +    +++ K+ F  ++E       +  + 
Sbjct: 1   MLDLDPNFRIGDDTETLLLQLEASEELFEEMYAKEDKD-KEGFLTLVESYGGTKDDQDLQ 59

Query: 210 DIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           DI+     L+L  F  S  W  K ++  +
Sbjct: 60  DIL-----LRLYGFVRSLPWPEKWLKDVI 83


>gi|294010392|ref|YP_003543852.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
 gi|292673722|dbj|BAI95240.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
          Length = 605

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 42/181 (23%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
           Q  A D T +  V A  GSGKT  LV ++ R++  +   P    C+T+++  A E++ R+
Sbjct: 23  QQAAYDSTGNCVVLAGPGSGKTKTLVLKLARIMAEDVRAPRGAACITYSQECARELTRRL 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +                                       L     L + T+H FC  
Sbjct: 83  ERL--------------------------------------GLREASNLFIGTVHGFCLR 104

Query: 143 -IMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            ++  +   A++   F   +A   QS + ++            +   +L +    +L+ +
Sbjct: 105 HLLMPYGRLADLPVPFPLTVATTRQSDQAMKRVGDRLFGVGHPNKTMDLGRHRRSVLDRT 164

Query: 200 N 200
           +
Sbjct: 165 S 165


>gi|150016221|ref|YP_001308475.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149902686|gb|ABR33519.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 671

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 23/187 (12%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            ++  + A  GSGKT +++ RV  L+         ++ +T TKAAA  M +R +      
Sbjct: 17  EKNVLIVAAPGSGKTTVIINRVDYLVKHKRVANGNIIVITFTKAAAQNMKNRYVSKFNTN 76

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           S            KI  +                 ++   G  V   H     I+ ++  
Sbjct: 77  SSPFFGTFHGLFYKILLRC-------------GRNIDIVDGAVV---HKIVSNILGKYFD 120

Query: 150 EANITSHFAIADEEQSKKLIEEAK---KSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E N      I +   +  L + ++        SI  +  EE  + + E  +  N  D + 
Sbjct: 121 EVNED---KIKEAINNISLYKTSRVPLNEFKPSIAKEIFEEALEKYEEYKKEHNKRDFDD 177

Query: 207 LISDIIS 213
           L  +++ 
Sbjct: 178 LAIEVLE 184


>gi|317129740|ref|YP_004096022.1| UvrD/REP helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315474688|gb|ADU31291.1| UvrD/REP helicase [Bacillus cellulosilyticus DSM 2522]
          Length = 599

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 42/161 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78
               Q  A +   S  V A  GSGKT +L  ++++LL     P   L C+T+ K A  E 
Sbjct: 13  KDESQYAAYNSNVSTVVKAGPGSGKTTVLTLKIMKLLYEKIKPPRGLACITYNKEAVKEF 72

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           ++R+ ++                              K +++ +            T+HA
Sbjct: 73  TNRLYDLGY---------------------------KKRQNVFL-----------GTVHA 94

Query: 139 FC-EAIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176
           FC   ++  +    E ++     I  E+  K++ +      
Sbjct: 95  FCIAEVISPYIHLYEYDVPLPLTIISEKDRKQIYDNIVSEL 135


>gi|222529588|ref|YP_002573470.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|312127363|ref|YP_003992237.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108]
 gi|222456435|gb|ACM60697.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|311777382|gb|ADQ06868.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108]
          Length = 641

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 50/227 (22%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAA 76
           + +    +      +  V A  GSGKT +L QR   LL       P  +L +++ K AA 
Sbjct: 15  ELEKNAEIVVKSNCNYLVIAGPGSGKTELLAQRACFLLQTGICYSPKRILAISYKKEAAK 74

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
            ++ RV +                               K  +  +++          T 
Sbjct: 75  NLAERVQKRCG---------------------------QKLANRFVSL----------TF 97

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSK-KLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            AF ++++ +F     +   +           ++ E K+S L        + L    Y  
Sbjct: 98  DAFAKSLLDRFLY--GLPEVYRPDVNYDINPSVLREGKRSILLRFEGKEPKHLLTGDYV- 154

Query: 196 LEISNDEDIETL-ISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241
                 + I +L I +II+ +   K + F        + +   LW +
Sbjct: 155 ------DGIHSLSIENIINKKMTDKKLPFNNEPNNLEEWMINELWKL 195


>gi|182626164|ref|ZP_02953923.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens D
           str. JGS1721]
 gi|177908520|gb|EDT71048.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens D
           str. JGS1721]
          Length = 664

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74
           + +  K +       ++S  V A  G+GKT +++ R+  LL         ++ +T TKAA
Sbjct: 1   MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEEKKVKGIHVIVITFTKAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA-------RHLLITILET 127
           A  M  R  E+                 KI  +  ++  + ++       R +L + +E 
Sbjct: 61  AENMKSRFKEMHKEGVIPFFGTFHGLFYKILLRNKDEIRLIESKDSYNIIRKVLSSYIEE 120

Query: 128 PGGLKV 133
               K+
Sbjct: 121 VSDEKI 126


>gi|168205452|ref|ZP_02631457.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens E
           str. JGS1987]
 gi|170662992|gb|EDT15675.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens E
           str. JGS1987]
          Length = 664

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 1/111 (0%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +  K +       ++S  V A  G+GKT +++ R+  LL         ++ +T TKAA
Sbjct: 1   MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEERKVKGIHVIVITFTKAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           A  M  R  E+                 KI  +  ++  + +++     I+
Sbjct: 61  AENMKSRFKEMHKEGVIPFFGTFHGLFYKILLRNKDEIRLIESKDSYNIIM 111


>gi|110802519|ref|YP_698548.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101]
 gi|110683020|gb|ABG86390.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           SM101]
          Length = 664

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +  K +       ++S  V A  G+GKT +++ R+  LL         ++ +T TKAA
Sbjct: 1   MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEERKVKGIHVIVITFTKAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           A  M  R  E+                 KI  +  ++  + +++
Sbjct: 61  AENMKSRFKEMHKEGVVPFFGTFHGLFYKILLRNKDEIRLIESK 104


>gi|86136250|ref|ZP_01054829.1| helicase IV [Roseobacter sp. MED193]
 gi|85827124|gb|EAQ47320.1| helicase IV [Roseobacter sp. MED193]
          Length = 951

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 30/194 (15%)

Query: 17  ISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
           I    +EQ  A      A  V A AGSGKT ++  +   LL +    P  +L L   + A
Sbjct: 151 IQPLSAEQRRAVLSEEDATLVLAGAGSGKTSVITAKATYLLKSGIREPGEILPLAFGREA 210

Query: 75  AAEMSHRVLEIITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A EM+ R+ +   A         +    I  ++G KP  +  +  +     ++       
Sbjct: 211 ANEMASRIGQACNAQVKAWTFHALAYHIIGDVEGTKPPLASHAGDQKRYSAVIR------ 264

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
                     I++Q            +A++++   ++ +           + + E K A+
Sbjct: 265 ---------RILRQL-----------VANDKKIADMLFDWFTQFPIECGSEWDYETKHAW 304

Query: 193 YEILEISNDEDIET 206
           Y  +E  N   ++ 
Sbjct: 305 YTHVESLNLRTLQG 318


>gi|119945770|ref|YP_943450.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
 gi|119864374|gb|ABM03851.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
          Length = 971

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP 62
             ++Q   + ++    T  ++        +  + A AG+GKT +++ R   LL    A  
Sbjct: 173 LKNYQRFFDRVEENPLTLRQRRACIIDDDNNLLLAGAGTGKTSVMIGRAGYLLNSQQAKH 232

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITA---WSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             +L L + + AA EM  R+ E +      +     +    I +++G KPN S  ++   
Sbjct: 233 HDILLLAYGRKAADEMDQRIKEKLQTDNISATTFHRLGLDIIAQVEGGKPNLSVFAEDEK 292

Query: 120 LLITILET 127
           +    ++ 
Sbjct: 293 VKAKWVQA 300


>gi|110799163|ref|YP_695861.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           ATCC 13124]
 gi|110673810|gb|ABG82797.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           ATCC 13124]
          Length = 664

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +  K +       ++S  V A  G+GKT +++ R+  LL         ++ +T TKAA
Sbjct: 1   MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEERKVKGIHVIVITFTKAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           A  M  R  E+                 KI  +  ++  + +++
Sbjct: 61  AENMKSRFKEMHKEGVIPFFGTFHGLFYKILLRNKDEIRLIESK 104


>gi|18310188|ref|NP_562122.1| ATP-dependent helicase [Clostridium perfringens str. 13]
 gi|18144867|dbj|BAB80912.1| ATP-dependent helicase [Clostridium perfringens str. 13]
          Length = 664

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +  K +       ++S  V A  G+GKT +++ R+  LL         ++ +T TKAA
Sbjct: 1   MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEERKVKGIHVIVITFTKAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           A  M  R  E+                 KI  +  ++  + +++
Sbjct: 61  AENMKSRFKEMHKEGVIPFFGTFHGLFYKILLRNKDEIRLIESK 104


>gi|301513245|ref|ZP_07238482.1| UvrD/REP helicase [Acinetobacter baumannii AB058]
          Length = 447

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 47/221 (21%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
           +   EQ  A +      V A  GSGKT  L   + R L     +P  + C+T+    A E
Sbjct: 15  EKNEEQFAAVNCRNHCVVLAGPGSGKTKTLTTAIARTLHEEIINPRAIACITYNNECAIE 74

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++                                       +E      + T+H
Sbjct: 75  LEGRLSKL--------------------------------------GIENNSQNFIGTVH 96

Query: 138 AFCE-AIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           +F    I+  +       + + F IA++ +    +E A K+       ++  +    +  
Sbjct: 97  SFALTQIIVPYARCLQGLLPNDFKIANKNECNLAVENAYKAI-----YNDGGDPHAQWEF 151

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             E  N E   T  +    N+   + I  + S L ++ +I+
Sbjct: 152 AKEKRNREVDRTHPAWKGHNKELAEFIEEYESELRKKGLID 192


>gi|169796400|ref|YP_001714193.1| putative helicase [Acinetobacter baumannii AYE]
 gi|213156862|ref|YP_002318907.1| UvrD/REP helicase [Acinetobacter baumannii AB0057]
 gi|169149327|emb|CAM87211.1| putative helicase [Acinetobacter baumannii AYE]
 gi|213056022|gb|ACJ40924.1| UvrD/REP helicase [Acinetobacter baumannii AB0057]
          Length = 593

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 47/221 (21%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
           +   EQ  A +      V A  GSGKT  L   + R L     +P  + C+T+    A E
Sbjct: 15  EKNEEQFAAVNCRNHCVVLAGPGSGKTKTLTTAIARTLHEEIINPRAIACITYNNECAIE 74

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++                                       +E      + T+H
Sbjct: 75  LEGRLSKL--------------------------------------GIENNSQNFIGTVH 96

Query: 138 AFCE-AIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           +F    I+  +       + + F IA++ +    +E A K+       ++  +    +  
Sbjct: 97  SFALTQIIVPYARCLQGLLPNDFKIANKNECNLAVENAYKAI-----YNDGGDPHAQWEF 151

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             E  N E   T  +    N+   + I  + S L ++ +I+
Sbjct: 152 AKEKRNREVDRTHPAWKGHNKELAEFIEEYESELRKKGLID 192


>gi|168213114|ref|ZP_02638739.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           CPE str. F4969]
 gi|170715337|gb|EDT27519.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           CPE str. F4969]
          Length = 664

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +  K +       ++S  V A  G+GKT +++ R+  LL         ++ +T TKAA
Sbjct: 1   MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEERKVKGIHVIVITFTKAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           A  M  R  E+                 KI  +  ++  + +++
Sbjct: 61  AENMKSRFKEMHKEGVIPFFGTFHGLFYKILLRNKDEIRLIESK 104


>gi|315126818|ref|YP_004068821.1| DNA helicase IV [Pseudoalteromonas sp. SM9913]
 gi|315015332|gb|ADT68670.1| DNA helicase IV [Pseudoalteromonas sp. SM9913]
          Length = 707

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           + ++    T+ ++        +  V A AG+GKT ++V R   L+    A+   +L L +
Sbjct: 181 DNVEANPLTEKQRRACIIDDDNNLVLAGAGTGKTSVMVARAGYLVNSEQANYDDILLLAY 240

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            K AA+EM  R+   +   +  +    S  +T I   +     +SK
Sbjct: 241 GKQAASEMDERIKAKLNTQAIKTATFHSLGLTIISEVERKTPKISK 286


>gi|168209670|ref|ZP_02635295.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens B
           str. ATCC 3626]
 gi|170712236|gb|EDT24418.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens B
           str. ATCC 3626]
          Length = 664

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +  K +       ++S  V A  G+GKT +++ R+  LL         ++ +T TKAA
Sbjct: 1   MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEERKVKGIHVIVITFTKAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           A  M  R  E+                 KI  +  ++  + +++
Sbjct: 61  AENMKSRFKEMHKEGVIPFFGTFHGLFYKILLRNKDEIRLIESK 104


>gi|58698437|ref|ZP_00373347.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535060|gb|EAL59149.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 893

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 105 QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
            G + NK  +++AR L   +     GL +QTIHAFC  ++  FP+EA I  +  +    +
Sbjct: 22  LGSRKNKDYLTRARRLFSELENL--GLTIQTIHAFCYKLISSFPIEAGIAPNCTL---SE 76

Query: 165 SKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
            K+L        L      +NE ++     I    ++  +  L+  +   R+
Sbjct: 77  CKELHSIIFNKVL------HNETVQDDINLIATEIDENKLRDLLYTLCIKRS 122


>gi|197303397|ref|ZP_03168436.1| hypothetical protein RUMLAC_02119 [Ruminococcus lactaris ATCC
           29176]
 gi|197297395|gb|EDY31956.1| hypothetical protein RUMLAC_02119 [Ruminococcus lactaris ATCC
           29176]
          Length = 723

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 41/181 (22%)

Query: 20  TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
             ++Q  A         + A  GSGKT +LV R+  ++      P  +L +T+T AA  +
Sbjct: 18  LNAQQKSAVQSVNGPVLLLAVPGSGKTTVLVTRLGYMIYCKGIDPEKILTVTYTVAATKD 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           MS R                                            E    L+ +TI+
Sbjct: 78  MSRRFAGYFGE-------------------------------------ELADRLEFRTIN 100

Query: 138 AFCEAIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
             C  I+  +         F  + DE+ +  ++    +    +   +++ +  +     +
Sbjct: 101 GLCAKIISYYGRMIGKKP-FELVQDEKITAGMLSMIYQQNEHAYATESDLKTVRTLITYI 159

Query: 197 E 197
           +
Sbjct: 160 K 160


>gi|323344490|ref|ZP_08084715.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
 gi|323094617|gb|EFZ37193.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
          Length = 899

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 42/166 (25%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V A  G GKT IL +R+     A    + +LCLT T  AA  M  R+   +   S    
Sbjct: 27  LVLAPPGCGKTQILTERIRTAHDAGTDYADMLCLTFTNRAARGMKERIRTHLGDRSVEEV 86

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                                 V  +H FC   +    +   I 
Sbjct: 87  Y-------------------------------------VGNVHRFCSKFLYDNGI---IP 106

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
           +  ++ D++ +  ++            +  N   ++ + E+++++ 
Sbjct: 107 AESSVIDDDDAISILARYLDE--DEYAVSANFTRRRQYAEVIQLAG 150


>gi|289662332|ref|ZP_06483913.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 447

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 72/227 (31%), Gaps = 63/227 (27%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA-EMSHRVLEIITAWSHL 92
            + A+AG+GKT  L     RL++        +L +T T++A           ++ A S +
Sbjct: 20  LIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTESATQELRRRIRERLVLAASLV 79

Query: 93  SDEILSAEITKIQGKKPNKSDMSKA-------------------------------RHLL 121
            D  + A +   +       D   A                               R +L
Sbjct: 80  PDAPVGAALAATEWSATQPPDAPSASVGAAPAAAELADDPSQPRPLLHEAPDVLLTRAIL 139

Query: 122 ITIL----ETPGGLK--------------VQTIHAFCEAIMQQFPLEAN--------ITS 155
            T L    ETP  L+              V TIH FC  ++++  LE+         + +
Sbjct: 140 ATHLAGGNETPAALRRRLQQAVEEIDLAAVFTIHGFCARVLREHALESGQAFAAPELLAN 199

Query: 156 HFAIADEEQSKKLIEEAKKSTLAS----IMLDNNEELKKAFYEILEI 198
              +  E  +    + A  + +A     +     E L      ++  
Sbjct: 200 DRELLGEVAADLWRQRAADAAMAEDLIALWSGGPEALASDLRALVRH 246


>gi|168217833|ref|ZP_02643458.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           NCTC 8239]
 gi|182380099|gb|EDT77578.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           NCTC 8239]
          Length = 664

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           + +  K +       ++S  V A  G+GKT +++ R+  LL         ++ +T TKAA
Sbjct: 1   MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEERKVKGIHVIVITFTKAA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA-------RHLLITILET 127
           A  M  R  E+                 KI  +  ++  + ++       R +L + +E 
Sbjct: 61  AENMKSRFKEMHKKGVIPFFGTFHGLFYKILLRNKDEIRLIESKDSYNIIRKVLSSYIEE 120

Query: 128 PGGLKV 133
               K+
Sbjct: 121 VSDEKI 126


>gi|227873398|ref|ZP_03991655.1| UvrD Rep family helicase [Oribacterium sinus F0268]
 gi|227840759|gb|EEJ51132.1| UvrD Rep family helicase [Oribacterium sinus F0268]
          Length = 443

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 21/125 (16%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + ++    +   + ++ A  G+GKT +L +R+L  ++     S  L L  T  A AE   
Sbjct: 11  QRKREYIREAEDNLFIVAGPGTGKTTLLSKRILNQIMGGERLSHFLLLAFTDEAVAEFKQ 70

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           ++ + +     ++ E+                      H L   +     + + T   FC
Sbjct: 71  KIKKHLYREIAINKEM---------------------SHRLKRKVYGIDSMHITTFRDFC 109

Query: 141 EAIMQ 145
             ++ 
Sbjct: 110 LYVIH 114


>gi|85716703|ref|ZP_01047671.1| ATP-dependent DNA helicase [Nitrobacter sp. Nb-311A]
 gi|85696421|gb|EAQ34311.1| ATP-dependent DNA helicase [Nitrobacter sp. Nb-311A]
          Length = 591

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 40/150 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEM 78
             +EQ  A        ++A  GSGKT +++ ++ R++      P  + C+T+T AA  E+
Sbjct: 3   LTAEQKDAVRCEDDLMLTACPGSGKTRVIISKLSRVIDEIRDTPRAVACITYTNAAVQEI 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   +        E                                     + TIH+
Sbjct: 63  ESRLRHHLQPGDDAYYE-------------------------------------ICTIHS 85

Query: 139 FCEA-IMQQFPLEA-NITSHFAIADEEQSK 166
           FC   I + F          F +   E ++
Sbjct: 86  FCLNHIFRPFCHLIKGYKDGFKVLTPESAE 115


>gi|51244734|ref|YP_064618.1| ATP-dependent DNA helicase II (Rep) [Desulfotalea psychrophila
           LSv54]
 gi|50875771|emb|CAG35611.1| related to ATP-dependent DNA helicase II (Rep) [Desulfotalea
           psychrophila LSv54]
          Length = 770

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 45/187 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA- 74
           ++  T  ++ +       A V A AGSGKT  +V+RV  LL     PS ++ L   ++A 
Sbjct: 1   MVELTAEQRRIIEHKGGHARVRAVAGSGKTTTMVERVAVLLARGVDPSHIMILMFNRSAR 60

Query: 75  ---AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
              AA +  R+ +                                             G 
Sbjct: 61  DAFAASLKKRLRKT-----------------------------------------GYRGP 79

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
           +V+T HA    +++ F     + +H  + +E   + L     +S +      +  +  + 
Sbjct: 80  EVRTFHALGLRLVESFVRRGALPAHRLVTEEGLRENLARRVGQSLVGQGEAWSLRDDLED 139

Query: 192 FYEILEI 198
           F   +++
Sbjct: 140 FLTFIDL 146


>gi|325295694|ref|YP_004282208.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325066142|gb|ADY74149.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 726

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78
             ++           + A  GSGKT +LV + L L+ +   +P ++  +T T+ A+ E 
Sbjct: 20 NDKQKEAIIYTKGPLKIIAGPGSGKTEVLVLKALYLITVKGVNPKSIFLVTFTRKASEEF 79

Query: 79 SHRVLEIITAWSHLSDEI 96
            R +    A      E+
Sbjct: 80 LSRFVNYAGALKEKHPEL 97


>gi|323703861|ref|ZP_08115496.1| UvrD/REP helicase [Desulfotomaculum nigrificans DSM 574]
 gi|323531179|gb|EGB21083.1| UvrD/REP helicase [Desulfotomaculum nigrificans DSM 574]
          Length = 794

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 75/221 (33%), Gaps = 61/221 (27%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMS 79
            + ++ S P     V A  G+GKT+ +++++  L+  +       +L L  T+AA  E+ 
Sbjct: 204 QDSIIRSSPEAEMLVLAGPGTGKTYSVIEKLKYLVEEDDSLEAENILLLCFTRAAVKEIR 263

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+   I    +  D +                                  ++++T  +F
Sbjct: 264 ERLQRDIETGDYTDDLL---------------------------------RIEIRTFDSF 290

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS--IMLDNNEELKKAFYEILE 197
              ++    L   +         +   + IE+A +   +   I+ +    +     +++ 
Sbjct: 291 ATHVL----LHIGVD-----VTGKDYDQRIEDAVEEINSEPAILENMGHFIVDEIQDLVG 341

Query: 198 ISNDEDIETLISDIISNR----------TALKLIFFFFSYL 228
           +        L+  ++ NR            L+ I+ + +  
Sbjct: 342 VR-----ARLVQTMLRNRKSSCGFTLLGDPLQGIYDYQAEP 377


>gi|325479234|gb|EGC82330.1| UvrD/REP helicase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 597

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 45/131 (34%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ T  + L A+       V A  G+GKT +L+ R+   L     P  +L +T +K  A 
Sbjct: 1   MNLTNQQNLAANHMDGPILVLAGPGAGKTTMLLHRI-SNLSKIIDPVHILTITFSKNQAI 59

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +M  R                        GK+ N                        TI
Sbjct: 60  DMEER----------------------YDGKETNF----------------------MTI 75

Query: 137 HAFCEAIMQQF 147
           HAFC  I++ +
Sbjct: 76  HAFCYLIIRNY 86


>gi|331017469|gb|EGH97525.1| putative ATP-dependent DNA helicase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 220

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 54/154 (35%)

Query: 29  DPTRSAWVSANAGSGKTHILVQ-------RVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           D  +S  + A AGSGKT  LV+       R    L  +     +  +T+T AA  E+  R
Sbjct: 27  DDPKSFLLFAGAGSGKTRTLVEALELMKQRYATELSMSG--RKIAIITYTNAACEEIKRR 84

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +                                                  V TIH+FC 
Sbjct: 85  IF-------------------------------------------FDANFMVSTIHSFCW 101

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
            +++ F   A+I +   +      +KL+    KS
Sbjct: 102 DLIKTF--TADIKAWLEVKLAADIEKLLSAIAKS 133


>gi|157962113|ref|YP_001502147.1| UvrD/REP helicase [Shewanella pealeana ATCC 700345]
 gi|157847113|gb|ABV87612.1| UvrD/REP helicase [Shewanella pealeana ATCC 700345]
          Length = 996

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 33/145 (22%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
            ++ Q+  ++I+    T  ++        +  V A AG+GKT  +  +   L+    A P
Sbjct: 177 LDAHQQLFDSIEANPLTPLQRQACVIDENNTLVIAGAGTGKTSTMAAKAAYLVNQGLARP 236

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L L + + A  E+  R+  I    +H                               
Sbjct: 237 EEILMLAYGRDARVELEQRISTIAGVSTHGDG---------------------------- 268

Query: 123 TILETPGGLKVQTIHAFCEAIMQQF 147
               T  G+KV T HA  + I+Q +
Sbjct: 269 ----TLAGVKVSTFHALGKEIIQYY 289


>gi|21226130|ref|NP_632052.1| superfamily I DNA/RNA helicase [Methanosarcina mazei Go1]
 gi|20904353|gb|AAM29724.1| Superfamily I DNA and RNA helicase [Methanosarcina mazei Go1]
          Length = 865

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPS 63
           FQ+ S  +D      S++           V A AGSGKT +L+ R   L           
Sbjct: 160 FQKSSFPLD-----NSQKRAIVTDDTHNLVVAGAGSGKTEVLITRTAYLTERAPDKVDAK 214

Query: 64  TLLCLTHTKAAAAEMSHRVLEIIT 87
            +L L +   AA E+  R+ +  +
Sbjct: 215 KILILAYQNKAAEEVKKRLKDRFS 238


>gi|254994269|ref|ZP_05276459.1| UvrD Rep family helicase [Listeria monocytogenes FSL J2-064]
          Length = 405

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 46/149 (30%)

Query: 9   EHSETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
            H  +++  ++   EQ+ A   D      + A AGSGKT  +  +   L+L        +
Sbjct: 101 HHLVSLNGGNEFNKEQVNAIRFDMRTHLRIIAGAGSGKTQTICAKAAYLVLKEKIQERNI 160

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +  T +K A+ EM  RV E +                                       
Sbjct: 161 VMCTFSKKASQEMKERVNEFLGG------------------------------------- 183

Query: 126 ETPGGLKVQTIHAFCEA----IMQQFPLE 150
                ++V T H + +     +++++P  
Sbjct: 184 --NSRIEVLTFHGWFQKEYNVLIKKYPYL 210


>gi|220909475|ref|YP_002484786.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219866086|gb|ACL46425.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 827

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           +  T  +Q + +     A V A AG+GKT  +V R+ RL+      P  +L  T +KAA 
Sbjct: 1   MQLTDEQQAVIAHDDGPALVFAVAGAGKTTSMVHRIERLVREKRFQPQRILATTFSKAAV 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            ++       +  WSH      + ++  +          +  + L          +   T
Sbjct: 61  EDLR----SALRPWSHCR----AVKVVTLHAFGFAMLRFAAGQGLYDPAYLNLERVGPTT 112

Query: 136 IHAFCEAIMQQFPLEA 151
                + +++Q    A
Sbjct: 113 -DKLPQTLIRQAANRA 127


>gi|324999584|ref|ZP_08120696.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 663

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 37  SANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
            A AG+GKT  + +R+  L+         +L +T T  AA E+  R+ + + A    +  
Sbjct: 2   LAGAGTGKTRTITRRIAHLVGQGHVVAGQVLAVTFTARAAGELRTRLRQ-LDAGGVQART 60

Query: 96  ILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQT 135
             +A + +++   P     S           + +     +V T
Sbjct: 61  FHAAALRQLRYFWPQVIGGSPWPLLDGKFRLVGQAAARARVGT 103


>gi|320161381|ref|YP_004174605.1| putative ATP-dependent DNA helicase [Anaerolinea thermophila UNI-1]
 gi|319995234|dbj|BAJ64005.1| putative ATP-dependent DNA helicase [Anaerolinea thermophila UNI-1]
          Length = 751

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 79/220 (35%), Gaps = 43/220 (19%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEM 78
            S+Q + +       +SA  G+GKT  L +    L+L         +L +T   AA    
Sbjct: 8   PSQQAILNYQGGWMGISAVPGAGKTFTLSRLAANLILGGRLEEDQEVLIVTLVNAAVDNF 67

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + R+   +     +                                     G  V+T+H 
Sbjct: 68  ASRIASFLREAGVMPGI----------------------------------GYTVRTLHG 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY--EIL 196
               I+++ P  A +  ++ I DE +S +++ +     +A + +  + +  + +   ++ 
Sbjct: 94  LANDIVRERPELAGLPENYRIVDEGESDRILMD-----IARMWMRGHSDWIEHYLKPDLS 148

Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
               D+ +   I  +I++     + +     +  +++ E+
Sbjct: 149 SQDRDQVMREKIFGLIADLARTSIRYCKDQGITPQRLREE 188


>gi|308070911|ref|YP_003872516.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305860190|gb|ADM71978.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 600

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 42/154 (27%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRV 82
           Q  A     S  V A  GSGKT +L  +++RLL      S  L C+T+ +AAA E + R+
Sbjct: 17  QSEAYMSNNSTVVIAGPGSGKTTVLTLKIMRLLQEEIPLSRGLACVTYNRAAAKEFNDRL 76

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-E 141
              +  ++  S+  L                                     T+H+FC  
Sbjct: 77  Q--LYGYNRRSNVFL------------------------------------GTVHSFCIA 98

Query: 142 AIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAK 173
            +++ F    +  I     I  +++ K++  E  
Sbjct: 99  EVIKPFAHLFDYSIPMPLKIISQKEKKQIFNEVL 132


>gi|289640616|ref|ZP_06472788.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509505|gb|EFD30432.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1162

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 41/160 (25%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +    ++ +         V A  G+GKT  +V+ V R +     P+ +L LT        
Sbjct: 37  ALDADQRRVVDHAGGPLLVLAGPGTGKTTTIVEAVARRVRDGLDPAAILVLTF------- 89

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                       S  +   L   IT   G                            T H
Sbjct: 90  ------------SRRAARELRERITWRLGAAVGVPLAW-------------------TFH 118

Query: 138 AFCEAIMQQF-PLEANITSHFAIADEEQSKKLIEEAKKST 176
           A+C A+++ + P    +     +    +    + +    T
Sbjct: 119 AWCYALLRLYRPDPLGVPP--RLLSGPEQDAQLRDLLAGT 156


>gi|207110225|ref|ZP_03244387.1| helicase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 122

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 93  SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             E     + +++ K   K D+ +  A+ +    L     +++ TI AF ++I+++F   
Sbjct: 8   EKEKSQNILKELEEKYHLKPDLVRNSAQKIYQRFLN--AEIRISTIDAFFQSILRKFCWF 65

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             ++++F +   E +K   ++  +  L+++  +  EEL     + L   N
Sbjct: 66  VGLSANFEV--NEDTKAHQQQLNEGFLSALNGEQLEELSVFIAQCLSYDN 113


>gi|229047955|ref|ZP_04193531.1| ATP-dependent DNA helicase rep [Bacillus cereus AH676]
 gi|228723412|gb|EEL74781.1| ATP-dependent DNA helicase rep [Bacillus cereus AH676]
          Length = 608

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAE 77
          Q   EQ  A     S  V A  GSGKT IL  ++++LL      P  L C+T++K AA E
Sbjct: 12 QQDPEQFTAFQSNTSIVVKAGPGSGKTTILTLKIMQLLNEKIAFPRGLACITYSKEAAKE 71

Query: 78 MSHRVLEI 85
           + R+ ++
Sbjct: 72 FTERLQKM 79


>gi|228924943|ref|ZP_04088091.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834721|gb|EEM80212.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 596

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 48/163 (29%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAA 76
           ++   ++++ S  T S  V A  GSGKT +L++R+   +   +   S + C+T+T +A  
Sbjct: 5   NEAYRQKIINSPVTDSIIVQAGPGSGKTTLLIERLKYFIQNRSSVLSGIACITYTNSAKD 64

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E+ +R+ +                                        +  P  L V TI
Sbjct: 65  EILNRLEK--------------------------------------KGISLPPELFVGTI 86

Query: 137 HAFCE-AIMQQFPLEAN--------ITSHFAIADEEQSKKLIE 170
           H+F    +++ +   A+        +   F+     + ++L+ 
Sbjct: 87  HSFLLEYVIKPYSYVASKTAESFILLPPGFSRGYYNEIRRLLN 129


>gi|169335123|ref|ZP_02862316.1| hypothetical protein ANASTE_01530 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257861|gb|EDS71827.1| hypothetical protein ANASTE_01530 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 663

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 10 HSETIDLISQTKSEQLL------ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP 62
           +E  DLI+  + ++L        +   R+    A AG GKT  L+ RV  L+    A+ 
Sbjct: 1  MNEQKDLITNIEEKELDKTQTECVNSEERNILAIAGAGCGKTTTLLARVKYLIEKRKANK 60

Query: 63 STLLCLTHTKAAAAEMSHRVLEI 85
            +L L+ T ++  E+  R+  +
Sbjct: 61 EDILILSFTNSSTNELKERIRRV 83


>gi|229489994|ref|ZP_04383847.1| putative DNA helicase [Rhodococcus erythropolis SK121]
 gi|229323095|gb|EEN88863.1| putative DNA helicase [Rhodococcus erythropolis SK121]
          Length = 647

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 18  SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75
           S T +++ +   P    A V+A AGSGKT  L  R+  L    +   S +L L+ ++A+ 
Sbjct: 16  SLTYAQRYVVEKPWDTRALVTAGAGSGKTTTLTYRLEYLTGSEDLEASEILVLSFSRASV 75

Query: 76  AEMSHRVLEIITAWSHLSDEILSA-EITKIQGKKPNKSDMS 115
            E+  RV  +      +  +      +T ++   P ++D++
Sbjct: 76  RELRDRVDRLAGTGRRVRAQTFDGWALTLLRQADPQRTDLA 116


>gi|254457568|ref|ZP_05070996.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacterales
            bacterium GD 1]
 gi|207086360|gb|EDZ63644.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacterales
            bacterium GD 1]
          Length = 1646

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 83/230 (36%), Gaps = 53/230 (23%)

Query: 12   ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
               ++I     EQ    +  +S    V A  GSGKT  LV ++  L+ + N      L L
Sbjct: 1055 RLKEIIHDLNDEQKRIFEDNKSSSIMVLAGPGSGKTKSLVHKIASLVTIENNKAEYFLML 1114

Query: 69   THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
             H++ A AE  +R+ ++I                                          
Sbjct: 1115 AHSRVAVAEFKNRLKKLIG--------------------------------------NQV 1136

Query: 129  GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
              +K+ T H+F   ++       + ++  ++     +    +E     +  ++LD  +++
Sbjct: 1137 YAMKIYTFHSFAIELLGTNIKN-DQSALHSVIALASNMLKNDEINLPYIQMLVLDEYQDV 1195

Query: 189  KKAFYEILE-----ISNDE------DIETLISDIISNRTALKLIFFFFSY 227
             K  YE ++     +SND+      D +  I++   ++  +  I  F + 
Sbjct: 1196 GKDTYEFIQAIYSKMSNDKKIIAVGDDDQCINNFGKDKADIVYIKHFKND 1245


>gi|153855426|ref|ZP_01996557.1| hypothetical protein DORLON_02571 [Dorea longicatena DSM 13814]
 gi|149752080|gb|EDM62011.1| hypothetical protein DORLON_02571 [Dorea longicatena DSM 13814]
          Length = 717

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 18 SQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
          +   S Q+ A +D   +  V+AN GSGKT +L+ ++L L      P   ++ LT T  AA
Sbjct: 8  NWLNSYQMEAVTDENDACIVNANVGSGKTTVLIAKILYLHYEKKIPLEKMVVLTFTNKAA 67

Query: 76 AEMSHRVLEI 85
           E+  R+ + 
Sbjct: 68 GEIIERLKKK 77


>gi|289426255|ref|ZP_06428001.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|289153420|gb|EFD02135.1| UvrD/REP helicase [Propionibacterium acnes SK187]
          Length = 562

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 38/150 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKA 73
           ++S T+ +  +         V A AG GKT  L  R+  LL       P  +L  T +  
Sbjct: 1   MVSPTQKQIDIRDTRVLDLLVVAPAGCGKTEALALRIQGLLHRGDVTAPKKILVTTFSNR 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A   +  R+   +T                                           + V
Sbjct: 61  ARDNIRERLGSYLTPSVMR------------------------------------DRVTV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEE 163
              H     +++       ++    + + +
Sbjct: 85  VNFHGLAARLIRAHGNVIGLSEELRLPEND 114


>gi|326560347|gb|EGE10734.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis 46P47B1]
          Length = 1315

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 36/184 (19%)

Query: 19  QTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
              SEQ+ A      ++  + A+AG+GKT  L   +LRLL+     P  ++  T T+AAA
Sbjct: 13  PKPSEQIAALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATTFTRAAA 72

Query: 76  AEMSHRVLEIITAW---------------------SHLSDEILSAEITKIQGKKPNKSDM 114
           AE+  R+ E + ++                     + +   I SA+        P    +
Sbjct: 73  AEIQERISERLHSFYGLMRWLQGMLSTQPEWFNQTAPIEQIITSADQAGYDAADPINEHL 132

Query: 115 SK----ARHLLIT--------ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
            +     +   +         +L +   L V T+ +  +  + +F  +    S   I + 
Sbjct: 133 LRFILSQKATFLNEVVYRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSGMEILNN 192

Query: 163 EQSK 166
            + K
Sbjct: 193 AEQK 196


>gi|320197271|gb|EFW71887.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli WV_060327]
          Length = 540

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             EQL A D   +  ++A  GSGKT ILV ++   L  +     ++ L++T  ++ E+ 
Sbjct: 3  LTKEQLDAIDYEGNLVITACPGSGKTTILVHKIAACLSHSKDYQGVVALSYTNKSSEELK 62

Query: 80 HRVLEIITAWSH 91
           R  ++    + 
Sbjct: 63 ARCRKLGAELNS 74


>gi|331664379|ref|ZP_08365285.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA143]
 gi|331058310|gb|EGI30291.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA143]
          Length = 1120

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 10/146 (6%)

Query: 67  CLTHTKAAAAEMSHRVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
            +T T+AA AE+  R+   I         E     + +   ++ +  D ++A   L+   
Sbjct: 1   MVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEID--DKAQAAQWLLLAE 58

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
                  V TIH FC+ ++     E+ +     + ++E    L  +A             
Sbjct: 59  RQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRHCYPLP 116

Query: 186 EELKKAFYEILEISNDEDIETLISDI 211
            E+ +  +E       +  + L+ DI
Sbjct: 117 REIAQVVFE-----TWKGPQALLRDI 137


>gi|114797384|ref|YP_761226.1| ATP-dependent DNA helicase domain-containing protein [Hyphomonas
            neptunium ATCC 15444]
 gi|114737558|gb|ABI75683.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Hyphomonas neptunium ATCC 15444]
          Length = 1715

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 47/132 (35%)

Query: 14   IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
            +D++S  + +         +  V A  GSGKT +LV R+  L+ +    P  +L L + +
Sbjct: 1107 MDIVSDERDQ--------TNVLVLAGPGSGKTKVLVHRIAFLIRVRREDPKGILVLAYNR 1158

Query: 73   AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             AA E+  R+  +I                                       E   G+ 
Sbjct: 1159 HAAQEILVRLRALIG--------------------------------------EDAAGVN 1180

Query: 133  VQTIHAFCEAIM 144
            + T HAF   ++
Sbjct: 1181 ISTCHAFAMRLV 1192


>gi|15835108|ref|NP_296867.1| UvrD/REP helicase family protein [Chlamydia muridarum Nigg]
 gi|8163234|gb|AAF73563.1| UvrD/REP helicase family protein [Chlamydia muridarum Nigg]
          Length = 890

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 34/197 (17%)

Query: 4   HNSFQEHSETIDLISQ----------TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL 53
           HNS +  S  +DL              + ++        +  V ++AGSGKT  ++ +V 
Sbjct: 117 HNS-EIISYLLDLYKDFFDRVLHYPLDEQQRRSIISEEENCLVISSAGSGKTSSILGKVR 175

Query: 54  RLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112
            L+ +    P  +  +++T  A++E++ R+              +   I  I G KP   
Sbjct: 176 YLIEIKGIDPRRIALISYTNKASSELTKRLATDGLRGYTFHKLAVDL-IGSITGVKP--- 231

Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE-- 170
                     +I   P  L ++ I   C+ +++      N+  +F   D+ +S++ I   
Sbjct: 232 ----------SICSNPEEL-IEEI---CQKLLKTKDFLKNVLKYFVFYDDCESERKIRDQ 277

Query: 171 --EAKKSTLASIMLDNN 185
             E KK  L ++  D +
Sbjct: 278 LSEQKKPFLKAVFPDMD 294


>gi|114561639|ref|YP_749152.1| UvrD/REP helicase [Shewanella frigidimarina NCIMB 400]
 gi|114332932|gb|ABI70314.1| UvrD/REP helicase [Shewanella frigidimarina NCIMB 400]
          Length = 995

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 72/222 (32%), Gaps = 60/222 (27%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64
           +F    + ++    T  ++        S  + A AG+GKT ++V R   L+ +  A  + 
Sbjct: 196 AFAGFFDHVESNPLTNKQRRACIIDDDSNLLLAGAGTGKTSVMVGRAGYLVNSGQAQAND 255

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L L + K AA EM  R+   + +                                    
Sbjct: 256 ILLLAYGKKAAMEMDLRIKHKLGS------------------------------------ 279

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA--IADE--------EQSKKLIE-EAK 173
                 +K  T H+    I+        +    +  + DE        ++ + LI+ E+ 
Sbjct: 280 ----DDIKASTFHSLGLKII---ADVEGVKPSLSAWVNDEPAKDKWVHDRLEVLIKNESY 332

Query: 174 KSTLASIMLDNNEELKKAFY-----EILEISNDEDIETLISD 210
           +  L           K  F      E  E  ND DI +L  +
Sbjct: 333 RKQLFDYFSRYYYVEKSPFEFSTQGEYFEYLNDNDIRSLKGE 374


>gi|330984007|gb|EGH82110.1| ATP-dependent DNA helicase pcrA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 700

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 45/138 (32%)

Query: 44  KTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           KT  L+ R   LL+ +   ++++ +T T   A E+  R+  ++                 
Sbjct: 52  KTKTLIHRTAHLLIKDVPATSIMLVTFTNKGADEIKERLEAMVG---------------- 95

Query: 104 IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA-IMQQF----PLE-ANITSH- 156
                                 E    +   T H+     I++ +     LE   +    
Sbjct: 96  ----------------------EDAQYITAGTFHSIIYKAILKAYADHPYLESIGLDMKE 133

Query: 157 FAIADEEQSKKLIEEAKK 174
            +I D+ +SK L EEA K
Sbjct: 134 CSILDDSESKALFEEAIK 151


>gi|226322868|ref|ZP_03798386.1| hypothetical protein COPCOM_00640 [Coprococcus comes ATCC 27758]
 gi|225208654|gb|EEG91008.1| hypothetical protein COPCOM_00640 [Coprococcus comes ATCC 27758]
          Length = 96

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHR 81
          +Q    D + +  V+AN GSGKT +L+++V  L          +  LT T  AA E++ R
Sbjct: 14 QQEAVLDESPACLVNANVGSGKTTVLIEKVRHLHEKKQVSYEKMAVLTFTNKAADEIAER 73

Query: 82 VLEIITAWSHLSDEILS 98
          +     +    +   L 
Sbjct: 74 LSRKKQSLRKKNCGDLE 90


>gi|50842338|ref|YP_055565.1| putative ATP-dependent DNA helicase PcrA [Propionibacterium acnes
           KPA171202]
 gi|50839940|gb|AAT82607.1| putative ATP-dependent DNA helicase PcrA [Propionibacterium acnes
           KPA171202]
 gi|315106961|gb|EFT78937.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
          Length = 562

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 38/150 (25%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKA 73
           ++S T+ +  +         V A AG GKT  L  R+  LL       P  +L  T +  
Sbjct: 1   MVSPTQKQIDIRDTRVLDLLVVAPAGCGKTEALALRIQGLLHRGDVTAPKKILVTTFSNR 60

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A   +  R+   +T                                           + V
Sbjct: 61  ARDNIRERLGSYLTPSVMR------------------------------------DRVTV 84

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEE 163
              H     +++       ++    + + +
Sbjct: 85  VNFHGLAARLIRAHGNVIGLSEELRLPEND 114


>gi|257066543|ref|YP_003152799.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
 gi|256798423|gb|ACV29078.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
          Length = 597

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 45/131 (34%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  + L          V A  G+GKT +L++R+ + L    +P  +L +T +K  A 
Sbjct: 1   MKLTSQQNLALRHKDGPILVLAGPGAGKTTMLLERI-KFLSETVNPKHILTITFSKTQAL 59

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +M  R                                                     TI
Sbjct: 60  DMKDR--------------------------------------------YNSSDANFMTI 75

Query: 137 HAFCEAIMQQF 147
           HAFC  I++ +
Sbjct: 76  HAFCYLIIRNY 86


>gi|291296555|ref|YP_003507953.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290471514|gb|ADD28933.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 809

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 46/196 (23%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           +  T  +Q + +     A V A AG+GKT  LV R+ RL+      P  +L  + ++ A 
Sbjct: 4   LRLTDEQQAIVAHNEGPALVFAVAGAGKTTALVHRLERLVRERVFEPRKILATSFSRLAV 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            ++       +  W H                                       ++V T
Sbjct: 64  DDLK----RALARWPHTQ------------------------------------AIQVST 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST----LASIMLDNNEELKKA 191
           +HA    I+++   E  +     + DE   + L++   +      L  +    N E +  
Sbjct: 84  LHALGYRIVRKAASE-GLLKLAEVRDEGSEQALLQRTLRRARELKLEWVSELENLEAEDF 142

Query: 192 FYEILEISNDEDIETL 207
              +     +     L
Sbjct: 143 LSYVGACKGNLQYADL 158


>gi|270285279|ref|ZP_06194673.1| UvrD/REP helicase family protein [Chlamydia muridarum Nigg]
 gi|301336675|ref|ZP_07224877.1| UvrD/REP helicase family protein [Chlamydia muridarum MopnTet14]
          Length = 852

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 34/197 (17%)

Query: 4   HNSFQEHSETIDLISQ----------TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL 53
           HNS +  S  +DL              + ++        +  V ++AGSGKT  ++ +V 
Sbjct: 79  HNS-EIISYLLDLYKDFFDRVLHYPLDEQQRRSIISEEENCLVISSAGSGKTSSILGKVR 137

Query: 54  RLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112
            L+ +    P  +  +++T  A++E++ R+        +   ++    I  I G KP   
Sbjct: 138 YLIEIKGIDPRRIALISYTNKASSELTKRL-ATDGLRGYTFHKLAVDLIGSITGVKP--- 193

Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE-- 170
                     +I   P  L ++ I   C+ +++      N+  +F   D+ +S++ I   
Sbjct: 194 ----------SICSNPEEL-IEEI---CQKLLKTKDFLKNVLKYFVFYDDCESERKIRDQ 239

Query: 171 --EAKKSTLASIMLDNN 185
             E KK  L ++  D +
Sbjct: 240 LSEQKKPFLKAVFPDMD 256


>gi|270289295|ref|ZP_06195597.1| UvrD/REP helicase family protein [Chlamydia muridarum Weiss]
          Length = 670

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 34/197 (17%)

Query: 4   HNSFQEHSETIDLISQ----------TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL 53
           HNS +  S  +DL              + ++        +  V ++AGSGKT  ++ +V 
Sbjct: 79  HNS-EIISYLLDLYKDFFDRVLHYPLDEQQRRSIISEEENCLVISSAGSGKTSSILGKVR 137

Query: 54  RLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112
            L+ +    P  +  +++T  A++E++ R+        +   ++    I  I G KP   
Sbjct: 138 YLIEIKGIDPRRIALISYTNKASSELTKRL-ATDGLRGYTFHKLAVDLIGSITGVKP--- 193

Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE-- 170
                     +I   P  L ++ I   C+ +++      N+  +F   D+ +S++ I   
Sbjct: 194 ----------SICSNPEEL-IEEI---CQKLLKTKDFLKNVLKYFVFYDDCESERKIRDQ 239

Query: 171 --EAKKSTLASIMLDNN 185
             E KK  L ++  D +
Sbjct: 240 LSEQKKPFLKAVFPDMD 256


>gi|320327008|gb|EFW83024.1| hypothetical protein PsgRace4_26815 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 633

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           D  ++  +S  AGSGKT+ LVQ  +R +LA     T+ C+T+T AA AE+  R+
Sbjct: 19 VDQGKNFLLSGGAGSGKTYSLVQ-FIRQVLAEDPKKTIACITYTNAAVAEIRGRI 72


>gi|87122397|ref|ZP_01078278.1| related to ATP-dependent DNA helicase II (Rep) [Marinomonas sp.
           MED121]
 gi|86162372|gb|EAQ63656.1| related to ATP-dependent DNA helicase II (Rep) [Marinomonas sp.
           MED121]
          Length = 766

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 42/182 (23%)

Query: 17  ISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           ++Q   EQL    ++   +A + A AG+GKT  L+ R+  L+     P  +      K+A
Sbjct: 1   MTQYTQEQLAVIQANTNINAKIIAVAGAGKTTTLIARINHLIEQGVQPDRIAVFMFNKSA 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
             E S R+L+ +T  S                                          V 
Sbjct: 61  QEEFSQRLLQAMTHQSTALKPE------------------------------------VM 84

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS----IMLDNNEELKK 190
           T H+F   + ++      I     I D+    KL+ EA +  +       + D  + L+ 
Sbjct: 85  TFHSFGMKLARRMEQRGLIERSELITDDFSLVKLMREAMQQLVRMQVNIELHDEKDWLED 144

Query: 191 AF 192
           A 
Sbjct: 145 AM 146


>gi|213423077|ref|ZP_03356095.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 53

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 38/90 (42%)

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + N  P +++ +T T  AAAEM HR+ +++                              
Sbjct: 2   VENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT---------------------------- 33

Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                     + GG+ V T H     +++ 
Sbjct: 34  ----------SQGGMWVGTFHGLAHRLLRA 53


>gi|307243591|ref|ZP_07525736.1| UvrD/REP helicase [Peptostreptococcus stomatis DSM 17678]
 gi|306493032|gb|EFM65040.1| UvrD/REP helicase [Peptostreptococcus stomatis DSM 17678]
          Length = 750

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 51/198 (25%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKA 73
           I   K ++ +    + S  + A  G+GKT I+   V +LL           +L LT+  +
Sbjct: 3   IVFRKDQKEIMKYKSGSMGIQAVPGAGKTFIITNLVAKLLKKMKDDDQDGKILVLTYMNS 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA     R+  I+       DE L                               GG +V
Sbjct: 63  AANNFKSRIRAIL------EDEGLDK-----------------------------GGFEV 87

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-------------KKSTLASI 180
            TIH+    I+++    A ++    I D+ +   LI+ A              +S L   
Sbjct: 88  MTIHSLAMKIIRENTDIAMLSEESQIIDDYKKGILIQMAIDEYESIPASETRIRSFLKKD 147

Query: 181 MLDNNEELKKAFYEILEI 198
           + D+  ++ K + E   I
Sbjct: 148 LRDDQAQVDKWYREFTNI 165


>gi|258517042|ref|YP_003193264.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780747|gb|ACV64641.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 748

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 42/202 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74
           +I     +Q  A+  +    V A  G+GKT +L     +L+         LL +T+  ++
Sbjct: 1   MIILRPGQQEAAAYRSGYLAVPAVPGAGKTTVLAYLGAQLIAEGRTGKGKLLIVTYMNSS 60

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AA    R+                                  AR L    L    G +V+
Sbjct: 61  AANFKARL----------------------------------ARELETRGLPGGRGYEVK 86

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-------KKSTLASIMLDNNEE 187
           T+H+    I+++ P    I+    I ++ +  +L+ E         ++   + +    +E
Sbjct: 87  TLHSLALTILKESPERLLISGEMTILEQAEQFQLLREVTHRWISGNRNVWEAALETGKQE 146

Query: 188 LKKAFYEILEISNDEDIETLIS 209
            K+ + E  +    +  + +IS
Sbjct: 147 NKEKYLEKWQAKTLDFFKNMIS 168


>gi|80159869|ref|YP_398613.1| putative ATP-dependent DNA helicase [Clostridium phage c-st]
 gi|78675459|dbj|BAE47881.1| putative ATP-dependent DNA helicase [Clostridium phage c-st]
          Length = 592

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 21 KSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
            +QL A +    +  V A AGSGKT +L++RV +L+   N  PS +L ++ T     E+
Sbjct: 4  NEQQLKAINFKDGACAVIAGAGSGKTTVLIERVKKLVQEHNVIPSDILIISFTVNTVKEL 63

Query: 79 SHRVLEI 85
            ++  I
Sbjct: 64 KTKLKNI 70


>gi|323359567|ref|YP_004225963.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
          StLB037]
 gi|323275938|dbj|BAJ76083.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
          StLB037]
          Length = 1064

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          + +      Q++A  P RS  V    GSGKT  LV RV RL+ +   P  +L LT T+  
Sbjct: 32 EALLDPHQRQVVAWAPERSGVVVGAPGSGKTSTLVARVRRLVESGVDPDDILVLTPTRPG 91

Query: 75 AAEMSH 80
          A  +  
Sbjct: 92 ATALRD 97


>gi|307150933|ref|YP_003886317.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
 gi|306981161|gb|ADN13042.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
          Length = 602

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 47/215 (21%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAA 76
             + +  +     +   V A AG GKT  ++ ++  +L +N   +P  +L LT +  AA 
Sbjct: 20  NDEKQLEVIFSQAKKLIVEAPAGYGKTKTMISKIAYMLASNQVKNPKKILALTFSVNAAY 79

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++   V E +       +                              ++    L +   
Sbjct: 80  KIKKDVAEQLPKLLQTKESY---------------------------FIKHQDNLFISNY 112

Query: 137 HAFCEAIMQQFPLEA-----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE---EL 188
           H FC  I++ +         NI       D+ + + L +      +  +  D  +   + 
Sbjct: 113 HGFCRHILKLYGYLLHETLRNID-TLKTFDDSKQEDLNQ------ITKLGYDQYKIFIDY 165

Query: 189 KKAFYEILEISNDEDIETLISDI---ISNRTALKL 220
            KA  +  E   +++ ET + ++   I NR  +  
Sbjct: 166 NKAVKDCNETYIEKNFETYVREVKEKILNRQYIPF 200


>gi|294679145|ref|YP_003579755.1| ATP-dependent DNA helicase PcrA [Rhodobacter capsulatus SB 1003]
 gi|294477961|gb|ADE87348.1| ATP-dependent DNA helicase PcrA [Rhodobacter capsulatus SB 1003]
          Length = 605

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 42/183 (22%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
           Q  A D T    V A  GSGKT  LV ++ R++  +   P    C+T+++  A E++ R+
Sbjct: 23  QQAAYDSTGHCVVLAGPGSGKTKTLVLKLARIMAEDVRAPRGAACITYSQECARELTRRL 82

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +                            + +A +L            + T+H FC  
Sbjct: 83  ERL---------------------------GLREAPNLF-----------IGTVHGFCLR 104

Query: 143 -IMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
            ++  +   AN+   F  A+A + QS + +             +   +L +    IL+ +
Sbjct: 105 HLLMPYGRLANLPVPFPLAVATQRQSDQAMNRVGDRLFGVGHPNKPMDLGRHRRSILDRT 164

Query: 200 NDE 202
           ++ 
Sbjct: 165 SEA 167


>gi|152996458|ref|YP_001341293.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
 gi|150837382|gb|ABR71358.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
          Length = 759

 Score = 65.7 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 44/226 (19%)

Query: 18  SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           S T  + L+   D T  A V A AG+GKT  L+ R+  LL+    PS +      K+A  
Sbjct: 4   SLTDEQTLVVHHDLTSPAKVIAVAGAGKTTTLISRIEHLLVQGVDPSHIGVFMFNKSAQE 63

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E S R+ + + +  H                                         V T 
Sbjct: 64  EFSERLSKRLMSAGHFRSP------------------------------------SVMTF 87

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS----IMLDNNEELKKAF 192
           HAF     ++   +  +++   I D+    K++ EA +  + +     MLD  + L+   
Sbjct: 88  HAFGMKFCRRLEQQGWLSAAKLITDDFSLVKMLREALQRLVRNGEKIAMLDEKDWLEDVL 147

Query: 193 YEILEISNDEDIETLISDIIS---NRTALKLIFFFFSYLWRRKIIE 235
             + ++   +    ++ + +     R     ++     L +R  I 
Sbjct: 148 LFVDQVKASDQPAQIVFEALGWSNERKFFPALYDELEKLRKRNNIR 193


>gi|83945741|ref|ZP_00958085.1| UvrD/REP helicase [Oceanicaulis alexandrii HTCC2633]
 gi|83850831|gb|EAP88692.1| UvrD/REP helicase [Oceanicaulis alexandrii HTCC2633]
          Length = 598

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 42/150 (28%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79
             +Q  A + T    + A  GSGKT  L  ++ R+L  +   P  + C+T+    A E+ 
Sbjct: 21  NEKQWQAFESTGHCVLLAGPGSGKTKTLTVKLARMLSEDVDEPRGIACITYNNECARELE 80

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+                    +  G  P                   G + + T+H+F
Sbjct: 81  SRL--------------------ETLGIAPG------------------GRVFIGTVHSF 102

Query: 140 CE-AIMQQFPLEA--NITSHFAIADEEQSK 166
               I+  +   A   +   F +A  +QS+
Sbjct: 103 SLTQILLPYAKVAGLGLPDEFTVATRQQSR 132


>gi|241959616|ref|XP_002422527.1| ATP-dependent DNA helicase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223645872|emb|CAX40535.1| ATP-dependent DNA helicase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 637

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 50/182 (27%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +P     + A  G+GKT  LV+R+ +L+     P +++ L+ T      +   + E I +
Sbjct: 16  NPKSVLSIQAGPGTGKTFALVKRIQKLIADGVSPQSIVVLSLTNRTVNSLRSALAEYIGS 75

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                  PG + ++T H+F   ++    
Sbjct: 76  --------------------------------------QPGDVVIKTFHSFAHDLI---- 93

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE----ELKKAFYEILEISNDEDI 204
            E+N+  +F    E+  + L+++       ++ +         L+KA  E+ +  +  D+
Sbjct: 94  -ESNLQEYF---PEKGRQMLLDDISFQNYRALFMSGKGVKQLHLEKAMSEVRDGKDIADV 149

Query: 205 ET 206
             
Sbjct: 150 AE 151


>gi|156841561|ref|XP_001644153.1| hypothetical protein Kpol_1053p32 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114789|gb|EDO16295.1| hypothetical protein Kpol_1053p32 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 614

 Score = 65.3 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 43/194 (22%)

Query: 17  ISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72
           +  TKS++ +     +P  +  + A  GSGKT  L+ RV +L+ +  A P  +L L+ T 
Sbjct: 1   MQLTKSQETVVEFPYEPESTLKIIAGPGSGKTITLLHRVKKLIDSGIAKPDEILILSLTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A   +  ++L++    +       + E   I                   I+   G   
Sbjct: 61  KAVDNILDKLLDLFEQKNGNPSIEFAEENDPI-----------------TRIVSQIG--- 100

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI----MLDNNEEL 188
           V TIH     I               + + E   ++IEE     L  +       N++  
Sbjct: 101 VYTIHGLANRI---------------VIENEGLLEIIEENGWKVLMKLVSSEFWKNSKPT 145

Query: 189 KKAFYEILEISNDE 202
            + F  +     + 
Sbjct: 146 AREFERLYNQYKNS 159


>gi|332034769|gb|EGI71309.1| hypothetical protein PH505_du00060 [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 650

 Score = 65.3 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 10 HSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           ++ +D+   T   Q +        S  +S  AGSGKT+ LV+ +L+ +L     +++ C
Sbjct: 2  ATQELDISHLTTESQKVIGLIRQGYSFLLSGGAGSGKTYSLVE-ILKAVLVENPTTSIAC 60

Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSD 94
          +T+T AA  E+  RV       S + D
Sbjct: 61 ITYTNAAVDEIEERVQHEHLHVSTIHD 87


>gi|83643486|ref|YP_431921.1| superfamily I DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83631529|gb|ABC27496.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 776

 Score = 65.3 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T+ +Q +       + ++A AGSGKT  L  R+  L+     P  +L L     AA 
Sbjct: 27  MQLTEEQQRIIQSGFEHSVITAVAGSGKTTTLAHRIHHLMDQGHDPRRILILMF-NRAAK 85

Query: 77  EMSHRVLEIITAWSHLSDEILS 98
           E   R L  +    +     + 
Sbjct: 86  EDFERKLRQVAGTHYREQPEVR 107


>gi|260906256|ref|ZP_05914578.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Brevibacterium linens BL2]
          Length = 1128

 Score = 65.3 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 37/163 (22%)

Query: 35  WVSANAGSGKTH----ILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIIT 87
            ++A+AGSGKT+    +L +R+ +           S ++  T T  AAA++  +  + + 
Sbjct: 5   VITASAGSGKTYRLTEVLSERLSQTTDDGQPVLRASEVIATTFTVRAAADLVEKTQKRLL 64

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
              +                              IT  E      + TI++    ++ ++
Sbjct: 65  DDGN------------------------------ITAAEEISTALIGTINSMSGRLVTEY 94

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            ++A  +    + DE++   +   A  + +A +   + + L +
Sbjct: 95  AIDAGFSPELRVLDEQERAIVFTTAVDAVVAEVEATHRDLLVR 137


>gi|34764246|ref|ZP_00145097.1| DNA helicase II [Fusobacterium nucleatum subsp. vincentii ATCC
          49256]
 gi|27885980|gb|EAA23305.1| DNA helicase II [Fusobacterium nucleatum subsp. vincentii ATCC
          49256]
          Length = 89

 Score = 64.9 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEII 86
          ++  + A+AG+GKT+ L    +  L             +L +T T+ A AE+   +L  +
Sbjct: 5  KNLVLKASAGTGKTYRLSLEYIVALCKKGDIEPIDYKNILVMTFTRKATAEIKEGILNKL 64

Query: 87 TAWSHLSD 94
          + +  + +
Sbjct: 65 SEFIEIYE 72


>gi|15894426|ref|NP_347775.1| ATP-dependent DNA helicase, uvrD-like [Clostridium acetobutylicum
          ATCC 824]
 gi|15024062|gb|AAK79115.1|AE007630_5 ATP-dependent DNA helicase, uvrD-like [Clostridium acetobutylicum
          ATCC 824]
 gi|325508555|gb|ADZ20191.1| ATP-dependent DNA helicase, uvrD-like protein [Clostridium
          acetobutylicum EA 2018]
          Length = 609

 Score = 64.9 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78
           K ++ + +       VSA AGSGKT  LVQ ++ L+     P + +L ++ T+AA   +
Sbjct: 4  NKQQKEVINLNEGIYCVSAGAGSGKTFSLVQHIIHLVNDLNIPQSDILLISFTRAAVNNL 63

Query: 79 SHRVLE 84
            ++ E
Sbjct: 64 KKKLEE 69


>gi|42524524|ref|NP_969904.1| exonuclease RexA [Bdellovibrio bacteriovorus HD100]
 gi|39576733|emb|CAE80897.1| probable exonuclease RexA [Bdellovibrio bacteriovorus HD100]
          Length = 1007

 Score = 64.9 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 31/162 (19%)

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            ++  T T+ A  E+  R++                      GK   + +  +    L  
Sbjct: 21  RIVVTTFTRKATQELKERLV----------------------GKALVEEETDEKNKGLFQ 58

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            + +   +++ TIH      + ++     +T  + I  E +    I +  +  +   +L+
Sbjct: 59  FVSSKSQVQISTIHGVLSLFLSRYGSAIGLTPDYKIMSESE----IRKGARKIMRKYLLE 114

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFF 225
           N +       E+LE  + + +E  +      +     + F  
Sbjct: 115 NPQ-----LQELLEEYDFQTLEGALLKYFGEQVIFPGMTFIR 151


>gi|197294727|ref|YP_001799268.1| ATP-dependent DNA helicase [Candidatus Phytoplasma australiense]
 gi|171854054|emb|CAM12027.1| ATP-dependent DNA helicase [Candidatus Phytoplasma australiense]
          Length = 713

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 48/157 (30%)

Query: 52  VLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN 110
           +  L+      S  +L LT T  AA +M +++LE+I   S                    
Sbjct: 45  IAYLIEKQNFLSKNILALTFTNKAADQMKNKILEMIGEKSK------------------- 85

Query: 111 KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS-----HFAIADEEQS 165
                              G+ + T HA    I++QF    NI       +F I ++++ 
Sbjct: 86  -------------------GVNILTFHALGNRILRQF---INILPFNYNRNFIILNDKEC 123

Query: 166 KKLIEEAKKST-LASIMLDNNEELKKAFYEILEISND 201
            ++++   K        ++N + L+K  + + + +N+
Sbjct: 124 NQILKIVAKEVNFDIQKVENIDNLRKEVFRLKKKTNE 160


>gi|149377922|ref|ZP_01895650.1| Superfamily I DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149357812|gb|EDM46306.1| Superfamily I DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 789

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 44/185 (23%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  ++ + +     A ++A AGSGKT  L  R+  LL     P+ +L L   +AA  +  
Sbjct: 47  TDEQRAIITAGFEHAVITAVAGSGKTSTLAWRIRYLLQQGHDPARMLVLMFNRAARVDFE 106

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           H++ E+    +  + E                                     ++T HA 
Sbjct: 107 HKLQEVTRHLTLATPE-------------------------------------IRTYHAM 129

Query: 140 CEAIMQQFPLEANITSHFA--IADEEQ----SKKLIEEAKKSTLASIMLDNNEELKKAFY 193
              + ++F  E      F+  I  +++    + +L        LA  +  N ++  +   
Sbjct: 130 GLRLYKRFVRE-GFLPGFSDKILTDQEISYQAWQLTRRLAPEDLADEIRRNKKDFVETAV 188

Query: 194 EILEI 198
             +++
Sbjct: 189 NFIDL 193


>gi|163800600|ref|ZP_02194501.1| putative ATP-dependent DNA helicase [Vibrio sp. AND4]
 gi|159176043|gb|EDP60837.1| putative ATP-dependent DNA helicase [Vibrio sp. AND4]
          Length = 637

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          +D +S+   E        +   +S  AGSGKT+ LV+ +LR ++ +     + C+T+T A
Sbjct: 8  LDKLSKEAKEVFKLIKDKKHFLLSGGAGSGKTYSLVE-ILRAVINDTPSVNIACITYTNA 66

Query: 74 AAAEMSHRV 82
          A +E+  R+
Sbjct: 67 AVSEIEDRL 75


>gi|194687506|ref|XP_001790073.1| PREDICTED: hypothetical protein [Bos taurus]
          Length = 819

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HP 62
             +F++  + ++    T  +++ +        + A AGSGKT  +V +V   LL     P
Sbjct: 192 LKTFKKFFDQVESTPLTDEQRVSSIIFEDRNLLVAAAGSGKTSTIVGKVGYALLTGLYKP 251

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE---------ITKIQGKKPN-KS 112
             +L L   K A  E+S R+   +       D  + A          I K  GK P+  +
Sbjct: 252 EEILVLAFNKNAGEELSERISFRLKDILSNFDTSVEALNFHKFGVKVIGKATGKSPSVSN 311

Query: 113 DMSKARHLLITILETP 128
           D  K + LL  I++  
Sbjct: 312 DAGKPQALLNRIIQQL 327


>gi|76801117|ref|YP_326125.1| helicase [Natronomonas pharaonis DSM 2160]
 gi|76556982|emb|CAI48556.1| probable helicase [Natronomonas pharaonis DSM 2160]
          Length = 613

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
             GSGKT  L+ RV  +L      + +L +++T+AAAAE+  R+ E +      + + L 
Sbjct: 13  GPGSGKTTALLDRVDEMLDDGVDVNDILVVSYTRAAAAEVRERLAERL----DCTPKSLR 68

Query: 99  AEITKIQGKKPNKSDMSK 116
             +  +  K     ++S+
Sbjct: 69  GNVCTMHAKAYELLNLSR 86


>gi|154484395|ref|ZP_02026843.1| hypothetical protein EUBVEN_02108 [Eubacterium ventriosum ATCC
           27560]
 gi|149734872|gb|EDM50789.1| hypothetical protein EUBVEN_02108 [Eubacterium ventriosum ATCC
           27560]
          Length = 660

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 48/213 (22%)

Query: 20  TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
             ++QL A    ++   + A  GSGKT +LV R+  ++      P ++L +T+T AA   
Sbjct: 17  LNNQQLKAVQSVQNPTLLLAVPGSGKTTVLVTRLGYMIYCLGIEPESILTVTYTVAATNY 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R       +  +  E L+A +                                +TI+
Sbjct: 77  MRQR-------FETMFGEQLAARLEF------------------------------RTIN 99

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSK-KLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
             C  I+  +       + F +  EE  K K++    +  L     +N+ +        +
Sbjct: 100 GICSKIINYYGNCIGRKA-FDLITEEGFKSKILSLIYQKELNEYPSENDLQTVITLITYI 158

Query: 197 E--ISNDEDIETLISDIISNRTALKLIFFFFSY 227
           +  + ++E+IE+L       +  L L   + +Y
Sbjct: 159 KNMMLSNEEIESL-----GKKENLPLAEIYKAY 186


>gi|301344667|ref|ZP_07225408.1| UvrD/REP helicase [Acinetobacter baumannii AB056]
          Length = 126

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 42/150 (28%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
           +   EQ  A +      V A  GSGKT  L   + R L     +P  + C+T+    A E
Sbjct: 15  EKNEEQFAAVNCRNHCVVLAGPGSGKTKTLTTAIARTLHEEIINPRAIACITYNNECAIE 74

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+ ++                                       +E      + T+H
Sbjct: 75  LEGRLSKL--------------------------------------GIENNSQNFIGTVH 96

Query: 138 AFCE-AIMQQFPLEAN--ITSHFAIADEEQ 164
           +F    I+  +       + + F IA++ +
Sbjct: 97  SFALTQIIVPYARCLQGLLPNDFKIANKNE 126


>gi|301311844|ref|ZP_07217766.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300829946|gb|EFK60594.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 567

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q    +   +  V A  GSGKT +L +++   +        ++ +++T  A+ E+ +R
Sbjct: 5  EQQKAILECRENLVVIAAPGSGKTFVLSEKIKNDIKELLDYQGIIAISYTNKASLELKNR 64


>gi|300856183|ref|YP_003781167.1| putative ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
          13528]
 gi|300436298|gb|ADK16065.1| predicted ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
          13528]
          Length = 623

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
           +   L A     +  V A  G+GKT +L Q+   LL  N   +P  +L ++  K AA  
Sbjct: 18 LEENALSAIKEKNNVLVVAGPGAGKTELLAQKACYLLQTNKCNNPRRILAISFKKDAAEN 77

Query: 78 MSHRVLEIITA 88
          +  RV +    
Sbjct: 78 LKERVEKRCGK 88


>gi|120556560|ref|YP_960911.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
 gi|120326409|gb|ABM20724.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
          Length = 774

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 46/195 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           +H    D +  T  ++ + +     A ++A AGSGKT  L  R+  LL     P  +L L
Sbjct: 25  DHLSLPDYL--TDEQRAIITSGYEHAVITAVAGSGKTSTLAWRIRYLLAQGHDPDRMLVL 82

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
              ++A                            K+  ++  +S  S++   L       
Sbjct: 83  MFNRSA----------------------------KVDFERKLQSVCSQSGLALPE----- 109

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFA--IADEEQ----SKKLIEEAKKSTLASIML 182
               ++T HA    + ++F  E      F+  I  E++    +  L        LA  + 
Sbjct: 110 ----IRTYHAMGLRLYRRFVRE-GYLPGFSEKILTEQEIGFQAWLLTRRLAPEELADEIR 164

Query: 183 DNNEELKKAFYEILE 197
            N ++  +     ++
Sbjct: 165 RNKKDFVETATGFID 179


>gi|169347068|ref|ZP_02866010.1| DNA helicase II [Clostridium perfringens C str. JGS1495]
 gi|169296751|gb|EDS78880.1| DNA helicase II [Clostridium perfringens C str. JGS1495]
          Length = 495

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            E++L+SD   +  + A AGSGKT +L  +++  +        +  +T T  A  E+  +
Sbjct: 7   REEILSSD--DNMIILAGAGSGKTTLLTNKIIDYVEKTKTHYKIAAITFTNKATNEIKLK 64

Query: 82  VLEII-TAWSHLSDEILSAEITK 103
           +   I   +   +D  +  EI +
Sbjct: 65  LKGKINGNFIGNNDSFVEQEIIR 87


>gi|256372491|ref|YP_003110315.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009075|gb|ACU54642.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 593

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78
            + E +LA  P R   V A AGSGKT +L +R+   +   A  P T   LT T+AAA  +
Sbjct: 14  AQREAVLAPAPVR---VIAPAGSGKTLVLTRRIAAQIRLGAVRPRTSAALTFTRAAALSL 70

Query: 79  SHRVLEIITAWSHLSDEILSAEITKI 104
             R+   +     ++  I  A +  +
Sbjct: 71  RQRLARTLDTTLPITTTIHGAALVWL 96


>gi|77360828|ref|YP_340403.1| helicase IV [Pseudoalteromonas haloplanktis TAC125]
 gi|76875739|emb|CAI86960.1| putative helicase IV [Pseudoalteromonas haloplanktis TAC125]
          Length = 731

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 36/143 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           ++    T  ++L          V A AG+GKT ++V + L L+    A P  +L L + K
Sbjct: 189 VESNPLTNEQRLAVIRNNDKNLVLAAAGTGKTSVMVAKTLDLIATKQAMPEQILVLAYNK 248

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA E+  R ++              A+  K+  K P                       
Sbjct: 249 TAAQELKTRFIKR-------------AQQAKLSSKSPE---------------------- 273

Query: 133 VQTIHAFCEAIMQQFPLEANITS 155
           V T HA    ++QQ     NI+ 
Sbjct: 274 VLTFHALGLQLLQQAGKGCNISP 296


>gi|212696571|ref|ZP_03304699.1| hypothetical protein ANHYDRO_01109 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676427|gb|EEB36034.1| hypothetical protein ANHYDRO_01109 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 600

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 45/131 (34%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +   A+       V A  GSGKT +L++R+ R+L        +L LT ++  A 
Sbjct: 1   MKFTSKQLQAANHKDGPLLVLAIPGSGKTTVLLERI-RILSKEIDQRKILNLTFSRIQAE 59

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +M  R     T +                                             TI
Sbjct: 60  DMKKRFANDKTNF--------------------------------------------MTI 75

Query: 137 HAFCEAIMQQF 147
           HAFC  I++ F
Sbjct: 76  HAFCYLIIRNF 86


>gi|311694085|gb|ADP96958.1| DNA helicase [marine bacterium HP15]
          Length = 554

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 62/210 (29%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
           D ++   + Q  A++   S  ++A  G+GKT +L QR   LL +    +P  +L ++   
Sbjct: 11  DNLTLEPNAQKAATEQIHSLALTAGPGAGKTEMLAQRADFLLRSGTCTYPKRILAISFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+  +  RV +                                         +      
Sbjct: 71  DASQNLRERVKKRCG-------------------------------------YDLASRFD 93

Query: 133 VQTIHAFCEAIMQQF-PLEAN---ITSHFAIADEEQSKKLI------------------- 169
             T HAF + I+ +F P+      +   F I D++  +K I                   
Sbjct: 94  SYTFHAFAKRIIDRFRPVLEGNDALDVGFTIGDQKVPRKQITFVDLVPLAIQILKTSSIA 153

Query: 170 EEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             A + T + + LD  ++     YE+++++
Sbjct: 154 RNAVRQTYSDVFLDEFQDCTHQQYELVKLA 183


>gi|54026512|ref|YP_120754.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54018020|dbj|BAD59390.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 1255

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 32/177 (18%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V    G+GKT +LV      + A A P+++L LTH+K AAA++   V   +      +  
Sbjct: 48  VLGGPGTGKTALLVDLAAGRIAAGADPASVLVLTHSKQAAADLRDAVTVRLAGHDSPTGG 107

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           +  A    +                            V+T+H++  +++++         
Sbjct: 108 VPGATTEPL----------------------------VRTLHSYAFSVLRRHASAHGNPP 139

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
              +    +   ++ E  +  LA I         +  +  L     +     + D++
Sbjct: 140 -PRLLTGAEQDAVLREMLRGDLADIAEGATGLWPQRLHAAL---GLDGFAQQLRDLM 192


>gi|62390644|ref|YP_226046.1| superfamily I DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325982|emb|CAF20145.1| Superfamily I DNA or RNA helicase [Corynebacterium glutamicum ATCC
           13032]
          Length = 1255

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            ++   +     A + A AG+GK+ ++++R+  L  A  +P  +  L+ T AAA
Sbjct: 485 QQREAITTDNPLAIIQAGAGTGKSTVILERIEYLCAAGTNPEEIAVLSFTNAAA 538


>gi|269102296|ref|ZP_06154993.1| DNA helicase IV [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162194|gb|EEZ40690.1| DNA helicase IV [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 701

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAA 75
           ++ ++ E +L +       V A AGSGKT +LV R   L+ +    P  +L L   + A+
Sbjct: 203 LNPSQREAVLIN--QDHNLVLAGAGSGKTSVLVARAGYLIASQKALPEEILMLAFGRMAS 260

Query: 76  AEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
            EM+ R+   ++       +  L  EI+     +     P   D       +  +L
Sbjct: 261 EEMNARMRTKVSDRVKVATFHSLGTEIIRQVEHERPNVSPIALDDKARSAWIARML 316


>gi|254478564|ref|ZP_05091938.1| UvrD/REP helicase subfamily protein [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035493|gb|EEB76193.1| UvrD/REP helicase subfamily protein [Carboxydibrachium pacificum
           DSM 12653]
          Length = 596

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 29/136 (21%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAA 75
           S  + +  +     +   V A AG GKT  ++ R+  L+  N   +P  +L LT +  AA
Sbjct: 13  SNDEEQLEVIFTDKKRIIVEAPAGYGKTKTMISRIAYLIATNRIPNPKKILALTFSVNAA 72

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            ++   V E +      S     +   K+                               
Sbjct: 73  YKIKKDVAENLPFILSNSPISPVSVKDKVFATNY-------------------------- 106

Query: 136 IHAFCEAIMQQFPLEA 151
            H FC  +++ +    
Sbjct: 107 -HGFCRRVLRLYGYLL 121


>gi|293602041|ref|ZP_06684496.1| UvrD/REP helicase [Achromobacter piechaudii ATCC 43553]
 gi|292819571|gb|EFF78597.1| UvrD/REP helicase [Achromobacter piechaudii ATCC 43553]
          Length = 710

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 27/226 (11%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T+ +  + +  +R++ V ANAG+ KT  L  R+   L     P  +L LT T  A   +
Sbjct: 17  PTEEQSRIQTSRSRTSLVIANAGAAKTTTLALRIGEALTRGLPPEDILALTFTDEARQVL 76

Query: 79  SHRVLEIITAWSHLS-------DEILSAEITKIQGKKPNKSDMSKARHLLI-TILETPGG 130
             R+ ++  A++          +E     + +I+  KP     ++ +       LE    
Sbjct: 77  QTRLTDVGIAYNTARRVNVQTVEEYAQRVLARIEDGKPESLPSTREQQAYALYALENVAT 136

Query: 131 --------LKVQTIHAFCEAIMQQF-PLEANITSHFAIADEEQSKKL-IEEAKKSTLAS- 179
                   L ++T H      + QF      + +   +A ++++  L I E+   T+   
Sbjct: 137 NNPQYAELLDIRT-H---NTAVSQFLDNLLKLKATMRLAPDDEADALTIAESAGVTITDY 192

Query: 180 IMLDNNEELKKAFYEILEISNDE----DIETLISDIISNRTALKLI 221
           +     E+ +   +  ++         D+  L+      R  L   
Sbjct: 193 LWAVEYEKQRVDVFGYVDARGFFDATYDLARLLRSSSDPRDVLTPY 238


>gi|89885768|ref|YP_515966.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89347766|gb|ABD71968.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 606

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL-LCLTHTKAAAAEM 78
             EQ  A   T +  V A  GSGKT  LV +   ++     P ++ L +T T A+A E 
Sbjct: 3  LNVEQERAVFCTENLMVLAPPGSGKTGTLVAKTKYIIT--MIPESIVLLVTFTDASAKEA 60

Query: 79 SHRVLEIITA 88
            R+ +++T+
Sbjct: 61 RERIGKLLTS 70


>gi|330504444|ref|YP_004381313.1| UvrD/REP helicase [Pseudomonas mendocina NK-01]
 gi|328918730|gb|AEB59561.1| UvrD/REP helicase [Pseudomonas mendocina NK-01]
          Length = 637

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGK+  LV RV+ LL      P  L  ++ T A+  E+  R+  ++  W +  D
Sbjct: 118 IFAGAGSGKSSTLVLRVVFLLCHLEVEPKRLTVISFTNASCHELRERLQRLLDFWHYPHD 177

Query: 95  EILSAEITKIQGKKPNKSDMSKAR 118
                           K  +   R
Sbjct: 178 ARQCVRTFHAAMATLAKERLGNPR 201


>gi|289422635|ref|ZP_06424477.1| putative helicase [Peptostreptococcus anaerobius 653-L]
 gi|289156986|gb|EFD05609.1| putative helicase [Peptostreptococcus anaerobius 653-L]
          Length = 763

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 41/193 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKA 73
           I+  K ++ +    + S  + A  G+GKT I+   V +L+    + +    +L LT+  +
Sbjct: 3   INYRKDQKKIMRYKSGSMGIQAVPGAGKTFIITNLVAQLIEDMENENRDGKILVLTYMNS 62

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A      R+  I++                         D+ K+R             +V
Sbjct: 63  AVNNFKSRIRGILS-----------------------DKDLPKSR------------FEV 87

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            TIH+    I+++    A ++    I D+ +   LI  A +        DNN     +F 
Sbjct: 88  MTIHSLAMKIIKENTDIAFVSEETEIIDDYKKSLLINSAIEEY---ESRDNNSNKILSFM 144

Query: 194 EILEISNDEDIET 206
           E    +N++ ++ 
Sbjct: 145 EKGFRNNEDKVDR 157


>gi|294654836|ref|XP_002770037.1| DEHA2A13530p [Debaryomyces hansenii CBS767]
 gi|199429186|emb|CAR65413.1| DEHA2A13530p [Debaryomyces hansenii]
          Length = 858

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 41/132 (31%)

Query: 20  TKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75
           T+S+  +   P    +   V A  GSGKT  +V+R+  L+      P  +L L+      
Sbjct: 53  TESQAKVIEFPPEMNKILVVKAGPGSGKTSTIVKRIAYLISIGKLKPEEILVLS------ 106

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             M++R +  +  +           +    G+                      G+ + T
Sbjct: 107 --MANRSVNSLKKY-----------LINTLGEDIT------------------SGISINT 135

Query: 136 IHAFCEAIMQQF 147
            H+FC  ++ Q+
Sbjct: 136 FHSFCGGLVDQY 147


>gi|294503038|ref|YP_003567100.1| exodeoxyribonuclease V beta chain [Yersinia pestis Z176003]
 gi|262365316|gb|ACY61873.1| exodeoxyribonuclease V beta chain [Yersinia pestis D182038]
 gi|294353497|gb|ADE63838.1| exodeoxyribonuclease V beta chain [Yersinia pestis Z176003]
          Length = 1159

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 3/113 (2%)

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T+AA  E+  R+ + I          +S +    Q      +D + A   L+    
Sbjct: 1   MVTFTEAATEELRGRIRDNIHGLRIACVRGVSDDPM-YQALLAEITDWAVAAAQLLAAER 59

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                 + TIH FC+ ++     E+ I   F     +    L  +A       
Sbjct: 60  QMDEAAIYTIHGFCQRMLANNAFESGI--LFEQTLVQDELPLWRQACADFWRR 110


>gi|226951282|ref|ZP_03821746.1| UvrD/REP family helicase [Acinetobacter sp. ATCC 27244]
 gi|226837974|gb|EEH70357.1| UvrD/REP family helicase [Acinetobacter sp. ATCC 27244]
          Length = 587

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86
          T + +++A  GSGKT  + QRV   + + A+ PS +  L+ TK+AA E+ HR+ E I
Sbjct: 17 TENIFLNACPGSGKTETIAQRVANEVESWANFPSGIAVLSFTKSAAKEIEHRIKEKI 73


>gi|126728040|ref|ZP_01743856.1| hypothetical protein SSE37_18657 [Sagittula stellata E-37]
 gi|126711005|gb|EBA10055.1| hypothetical protein SSE37_18657 [Sagittula stellata E-37]
          Length = 729

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++++A  P   A V A  G+GKT  + +R+ RLL +  +PS +  + +++ A AE+  R
Sbjct: 190 QDRVVALPPDARAVVVAGPGAGKTFTIQRRICRLLESGLNPSAISVIAYSRTAVAELLAR 249

Query: 82  V 82
           V
Sbjct: 250 V 250


>gi|167623927|ref|YP_001674221.1| UvrD/REP helicase [Shewanella halifaxensis HAW-EB4]
 gi|167353949|gb|ABZ76562.1| UvrD/REP helicase [Shewanella halifaxensis HAW-EB4]
          Length = 1013

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 42/179 (23%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62
            ++++   ++++    T+ ++        +  V A AG+GKT  +  +   L+    A P
Sbjct: 177 LDAYKNLFDSLEANPLTQFQREACVVDENNTLVIAGAGTGKTSTMAAKAAYLVNQGLAQP 236

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L L + K A  E+  RV  I      L+                             
Sbjct: 237 QDILMLAYGKDAQVELEQRVSSIAGGSGALT----------------------------- 267

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA--DEEQSKKLIEEAKKSTLAS 179
                   +KV T HA  + I++      N +S  ++   DE+Q  + I++     +A 
Sbjct: 268 -------AIKVSTFHALGKEIIE---YYLNRSSQVSVLARDEKQFTQFIDQQIDQIVAD 316


>gi|330998293|ref|ZP_08322118.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329568682|gb|EGG50483.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 871

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQ--RVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            ++        +  V ++AGSGKT  +V   R L  +  + +P  +L +++T  AAAE++
Sbjct: 159 QQRRSIVSEEDNCLVVSSAGSGKTSSIVGKGRFLVDI-KHINPQKILLISYTNKAAAELT 217

Query: 80  HR 81
            R
Sbjct: 218 ER 219


>gi|313107801|ref|ZP_07793975.1| hypothetical protein PA39016_001140002 [Pseudomonas aeruginosa
           39016]
 gi|310880477|gb|EFQ39071.1| hypothetical protein PA39016_001140002 [Pseudomonas aeruginosa
           39016]
          Length = 558

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 45/200 (22%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTK 72
           D ++   +    A +   S  ++A  G+GKT +L QR   LL   A  +P  +L ++   
Sbjct: 11  DGLTLEPNALRAAKEQMHSLALTAGPGAGKTEMLAQRADFLLRTGACRYPKRILAISFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A++ +  RV     +                                     E      
Sbjct: 71  DASSNLKERVKRRCGS-------------------------------------ELASRFD 93

Query: 133 VQTIHAFCEAIMQQF-PLEAN---ITSHFAIADE--EQSKKLIEEAKKSTLASIMLDNNE 186
             T HAF + I+ +F P+      + + + IAD     S+ LIE A    LA  +L  +E
Sbjct: 94  SYTFHAFAKRIIDRFRPVLTGEYALDAGYKIADRKPGPSRSLIEFADLVPLAIQILQKSE 153

Query: 187 ELKKAFYEILEISNDEDIET 206
             + A  +       ++ + 
Sbjct: 154 MARNAIRQTYSDVFLDEFQD 173


>gi|254522432|ref|ZP_05134487.1| UvrD/REP helicase [Stenotrophomonas sp. SKA14]
 gi|219720023|gb|EED38548.1| UvrD/REP helicase [Stenotrophomonas sp. SKA14]
          Length = 924

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 10/141 (7%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
            ++  + ++    T+ +            V A+AGSGKT  +V +    +      P  +
Sbjct: 208 AKDFLDRVESRPLTEEQARAVICFDNRVQVVASAGSGKTSTMVAKAAYAIDRGFVEPERI 267

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS--------AEITKIQGKKPNKSDMS-K 116
           + L   K AA E+  R              + +        A I K  G+KP+  + +  
Sbjct: 268 VMLAFNKDAARELEERAQRCFDRLGMGDTVVEARTFHALGLAIIGKATGRKPDIPEWAID 327

Query: 117 ARHLLITILETPGGLKVQTIH 137
           A      + E    LK ++IH
Sbjct: 328 ATQGFNKLAELVDDLKDRSIH 348


>gi|292558176|gb|ADE31177.1| Superfamily I DNA and RNA helicase [Streptococcus suis GZ1]
          Length = 68

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67
           +  ++ ++  ++E +  ++      + A AGSGKT +L  R+  L+     +P  +L 
Sbjct: 1  MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILA 57


>gi|261400121|ref|ZP_05986246.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC
          23970]
 gi|269210113|gb|EEZ76568.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC
          23970]
          Length = 100

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 35 WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80
           + A+AG+GKT+ +     RL+ L       +L +T TKAA AE+ H
Sbjct: 20 LIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKH 66


>gi|325478265|gb|EGC81384.1| UvrD/REP helicase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 848

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 40/191 (20%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81
           ++ +  D    A V A  G+GKTH +V  V   +       + +L  T TK AA E++ R
Sbjct: 6   QEKIIKDAKLPAVVLAGPGTGKTHTIVNFVAEGIKKKRFDANKVLITTFTKKAAKELNTR 65

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           ++  +                                     I      + +   H+   
Sbjct: 66  IITKLK---------------------------------YDNIKVDLKDMMIGNFHSLAI 92

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI--- 198
             ++++    +   +  + D    + +I+E        I   ++   K     IL+I   
Sbjct: 93  DFIKKYRKLDDNFFNLTVIDSYMEEYIIKE-NLDVFRKIDGFDDLIRKNQVATILDIFQT 151

Query: 199 --SNDEDIETL 207
             +N  D+E L
Sbjct: 152 ITNNLVDLEDL 162


>gi|325846458|ref|ZP_08169373.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481216|gb|EGC84257.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 600

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 45/131 (34%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +   A+       V A  GSGKT +L++R+ R+L        +L LT ++  A 
Sbjct: 1   MKFTSKQLQAANHKDGPLLVLAIPGSGKTTLLLERI-RILSKEIDQRKILNLTFSRIQAN 59

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +M  R     T +                                             TI
Sbjct: 60  DMKKRFASDKTNF--------------------------------------------MTI 75

Query: 137 HAFCEAIMQQF 147
           HAFC  I++ F
Sbjct: 76  HAFCYLIIRNF 86


>gi|311696305|gb|ADP99178.1| UvrD/REP helicase [marine bacterium HP15]
          Length = 773

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 45/197 (22%)

Query: 9   EHSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +  ET +L      EQ         ++ ++A AGSGKT  L  R+  LL     P  +L 
Sbjct: 22  QIPETTNLPDFLTDEQRAIITAGYENSVITAVAGSGKTSTLAWRIRYLLEQGHDPDRMLV 81

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           L   ++A      RV           +  L     +     P                  
Sbjct: 82  LMFNRSA------RV---------DFERKLQEVCARSGLALPE----------------- 109

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFA--IADEEQ----SKKLIEEAKKSTLASIM 181
                ++T HA    + ++F  E      F+  I  E++    + +L        LA  +
Sbjct: 110 -----IRTYHAMGLRLYKRFVRE-GYLPGFSDKILTEQEISFQAWQLTRRLAPEDLADEI 163

Query: 182 LDNNEELKKAFYEILEI 198
             N ++  +     +++
Sbjct: 164 RRNKKDFVETATGFIDL 180


>gi|290978611|ref|XP_002672029.1| predicted protein [Naegleria gruberi]
 gi|284085602|gb|EFC39285.1| predicted protein [Naegleria gruberi]
          Length = 874

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 41/128 (32%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMS 79
           + +Q++  D      V A AGSGKT  ++ +++ ++     P   ++  T ++ AA +M 
Sbjct: 102 EQKQVVFGDVNDDLLVLACAGSGKTTTIICKIVYMIKYLKIPAHQIMLTTFSRLAANDMK 161

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++  I                                               + TI AF
Sbjct: 162 EKLASIGVK----------------------------------------SKFTIGTIDAF 181

Query: 140 CEAIMQQF 147
               ++++
Sbjct: 182 AYKTLKKY 189


>gi|229545193|ref|ZP_04433918.1| DNA helicase II [Enterococcus faecalis TX1322]
 gi|229309738|gb|EEN75725.1| DNA helicase II [Enterococcus faecalis TX1322]
          Length = 515

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          ++++ +   + +LA+  + +  VSA+AGSGKT I+V ++L+ +   +   T+  +T T  
Sbjct: 1  MEIVDEQVRKDILAA--SGNIIVSASAGSGKTTIMVNKILKKMSEISDHKTVAAITFTVK 58

Query: 74 AAAEMSHR 81
          A  E+  +
Sbjct: 59 ATEEIKRK 66


>gi|70608424|gb|AAZ04488.1| putative DNA helicase [Acetobacter aceti]
          Length = 77

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68
           +++   EQ  A + T     V A AG+GKT +L  R   +LL   A P  +L +
Sbjct: 23 YLARLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLTGRAKPWQILTV 77


>gi|288869746|ref|ZP_05976079.2| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288861444|gb|EFC93742.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 569

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 33/230 (14%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70
           +T++       +++     +++  + A AG+GKT  L+ ++  L+   +  P  +LCL+ 
Sbjct: 97  KTVNSKPLDTQQKIACVLDSKNVQIIAGAGTGKTFTLIAKIKYLIAKKHVRPEDILCLSF 156

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           +  +  ++  ++ E +   +          + +   K+ +K  + +   +L  I +    
Sbjct: 157 SNTSVRDLKGKLPENVEVRTF-------HSLGRSVIKQHHKVSVIENNEILAIINDYLAN 209

Query: 131 LKVQT---IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--------AKKSTLAS 179
               T   I  FC++         NI S   I      K+L+ E        A K  LA 
Sbjct: 210 ANTDTLKDILEFCDS------YFLNIES--YIIRRNDRKELLNELKEAFTKVAFKPLLAD 261

Query: 180 -IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228
            I L       K ++     SN      +   I  +        ++  YL
Sbjct: 262 FINLFKGNNFTKDYFSYFRSSNYGKDHDIFLKIAED-----FYSYYQEYL 306


>gi|91790895|ref|YP_551846.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91700775|gb|ABE46948.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 600

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 37/133 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
            ++ T ++Q  A D   +  + A  GSGKT   V +  R+L   + P   L+ +T TK  
Sbjct: 12  FMAFTPTQQE-AIDHDGNLMIVAGPGSGKTTTSVAKARRIL---SDPRRSLIMVTFTKEG 67

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A EM  R+ +                     G+ P                     L+V 
Sbjct: 68  AEEMRKRLEKAQVG----------------SGQPPIAKH----------------RLRVG 95

Query: 135 TIHAFCEAIMQQF 147
           T H+     + + 
Sbjct: 96  TFHSIALQHLFEH 108


>gi|217032965|ref|ZP_03438439.1| hypothetical protein HPB128_182g19 [Helicobacter pylori B128]
 gi|216945334|gb|EEC24008.1| hypothetical protein HPB128_182g19 [Helicobacter pylori B128]
          Length = 136

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 92  LSDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
           +  E     + +++ K      + +  A  +    L     +++ TI AF ++I+++F  
Sbjct: 1   MKKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLN--AEVRISTIDAFFQSILRKFCW 58

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---NDEDIET 206
              ++++F +   E +K    +  +  L+++  +  EEL     + L      +D  +E 
Sbjct: 59  FVGLSANFEV--NEDTKVHQRQLNEGFLSALNNEQLEELSAFIVQCLSYDSYTSDSILER 116

Query: 207 L 207
           L
Sbjct: 117 L 117


>gi|227499421|ref|ZP_03929532.1| DNA helicase II [Anaerococcus tetradius ATCC 35098]
 gi|227218483|gb|EEI83726.1| DNA helicase II [Anaerococcus tetradius ATCC 35098]
          Length = 597

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 45/131 (34%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  + + +        V A  G+GKT +L++R+  L      PS +L +T +K  A 
Sbjct: 1   MKLTDKQIIASRHIDGPVLVLAGPGAGKTTMLLERIKYL-SERIDPSHILTITFSKNQAT 59

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +M  R     T +                                             TI
Sbjct: 60  DMEERYDSKKTNF--------------------------------------------MTI 75

Query: 137 HAFCEAIMQQF 147
           HAFC  I++ +
Sbjct: 76  HAFCYLIIRNY 86


>gi|167627899|ref|YP_001678399.1| DNA/RNA helicase superfamily I protein [Francisella philomiragia
          subsp. philomiragia ATCC 25017]
 gi|167597900|gb|ABZ87898.1| DNA and RNA helicase superfamily I protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
          Length = 686

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +  T  +Q + + D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A 
Sbjct: 1  MQYTAEQQKIITHDLDKHALVSAVAGSGKTQTLIARIEYLIDNKVPPNKILVLMYNKSAQ 60

Query: 76 AEMSHRVLEIITA 88
           + + R+ ++I A
Sbjct: 61 LDFAERLKKVIKA 73


>gi|241668452|ref|ZP_04756030.1| DNA/RNA helicase superfamily I protein [Francisella philomiragia
          subsp. philomiragia ATCC 25015]
 gi|254876985|ref|ZP_05249695.1| DNA and RNA helicase [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254843006|gb|EET21420.1| DNA and RNA helicase [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
          Length = 686

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +  T  +Q + + D  + A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A 
Sbjct: 1  MQYTAEQQKIITHDLDKHALVSAVAGSGKTQTLIARIEYLIDNKVPPNKILVLMYNKSAQ 60

Query: 76 AEMSHRVLEIITA 88
           + + R+ ++I A
Sbjct: 61 LDFAERLKKVIKA 73


>gi|26990390|ref|NP_745815.1| helicase, putative [Pseudomonas putida KT2440]
 gi|24985353|gb|AAN69279.1|AE016563_2 helicase, putative [Pseudomonas putida KT2440]
          Length = 552

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 61/192 (31%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
            RS  ++A  G+GKT +L QR   LL  N+   P  +L ++    A+  +  R+      
Sbjct: 27  DRSILLTAGPGAGKTEVLAQRADYLLRTNSCRFPKRILAVSFKTDASRNLKERIQ----- 81

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF- 147
                                           L             T H F + I+ +F 
Sbjct: 82  --------------------------------LRCGWNFASRFDSVTFHGFAKRIIDKFL 109

Query: 148 PLEA--NITSHFAIADEE-------------------QSKKLIEEAKKSTLASIMLDNNE 186
           P+ A   ++  +AI  E                    Q  ++   A + T A + LD  +
Sbjct: 110 PILAEEGLSPDYAIGAETIPGKQITFKQLLPLAIKIIQRSEVARNAIRKTYAHVFLDEFQ 169

Query: 187 ELKKAFYEILEI 198
           +     YE++++
Sbjct: 170 DCTADQYELIKL 181


>gi|262361073|gb|ACY57794.1| exodeoxyribonuclease V beta chain [Yersinia pestis D106004]
          Length = 552

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +T T+AA  E+  R+ + I          +S +    Q      +D + A   L+    
Sbjct: 1   MVTFTEAATEELRGRIRDNIHGLRIACVRGVSDDPM-YQALLAEITDWAVAAAQLLAAER 59

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANI 153
                 + TIH FC+ ++     E+ I
Sbjct: 60  QMDEAAIYTIHGFCQRMLANNAFESGI 86


>gi|294502081|ref|YP_003566146.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber M8]
 gi|294342065|emb|CBH22730.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber M8]
          Length = 772

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 39/167 (23%)

Query: 17  ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTK 72
           +++ + +Q            V+A  GSGKT  L  R+   L+A A       +L +T   
Sbjct: 1   MAEPRPQQKEVLGYEGGTMGVAAVPGSGKTWTLT-RLAARLVAEADLEARQEVLVVTLVN 59

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           ++    S R+ +++     L D                                   G +
Sbjct: 60  SSVDNFSSRIDQLVEQEGMLPDV----------------------------------GYR 85

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           V T+H     I++  P  A ++  F + D+ QS  ++ +  +S   S
Sbjct: 86  VCTLHTLAHEIVRARPDLAGLSEDFHVVDDRQSSDILRDVAESWYQS 132


>gi|42518981|ref|NP_964911.1| hypothetical protein LJ1056 [Lactobacillus johnsonii NCC 533]
 gi|41583268|gb|AAS08877.1| hypothetical protein LJ_1056 [Lactobacillus johnsonii NCC 533]
          Length = 531

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           ++  EQ        +  + A  GSGKT+ +V+++  +L    +   ++ ++ T  A+ E+
Sbjct: 2   ESSDEQKEIIKDKNNLVIIARPGSGKTYTIVEKIQLILEDLYNYQGIIAISFTNKASEEL 61

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             R ++   A +      +                  + + L I  LE    L+
Sbjct: 62  RKRCIDKGLALNKSFFGTIDKFCFSEIIVPFCSHLSGRNQELKIKSLEENTRLR 115


>gi|256374999|ref|YP_003098659.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919302|gb|ACU34813.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 1050

 Score = 63.0 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 31/183 (16%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           S+   + +   + + +   P     V    G+GKT ++ +   R + A A P ++L LT 
Sbjct: 14  SDPRPVPTWDAASRRVLEHPGGPLRVLGGPGTGKTTLIAETAARRVHAGAAPESVLVLTA 73

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            + AA                   E L A +T +  + P+   +   R  L         
Sbjct: 74  NRRAA-------------------ESLRAHLTALIRRTPDGELLPVVREPL--------- 105

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
             V+T+H++  A+++   +         +    +   ++ E     + +   D  E L+ 
Sbjct: 106 --VRTVHSYAFAVLRARAVRDGEPP-PRLLAGPEQDAVVRELITGDVEAGARDWPERLRP 162

Query: 191 AFY 193
           A  
Sbjct: 163 ALA 165


>gi|300783059|ref|YP_003763350.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
 gi|299792573|gb|ADJ42948.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
          Length = 1057

 Score = 63.0 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 29/175 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     + + S P     V    G+GKT +L     R +   A P ++L LT ++ +A  
Sbjct: 12  TWDAGARRVLSAPGGFLRVLGGPGTGKTALLASAATRRIAEGADPESVLVLTTSRKSADA 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +   +   +TA                        D  +AR L  T+ E      V+T+H
Sbjct: 72  LRADITRRLTA------------------------DPEQARPLPRTVREPL----VRTVH 103

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++  ++++   +   +     +    +   ++ E     L        E+L+ A 
Sbjct: 104 SYAYSLLRLEAMAEELPP-PRLLAGAEQDVVVRELLAGDLDEEAEYWPEQLRPAL 157


>gi|109897059|ref|YP_660314.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
 gi|109699340|gb|ABG39260.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
          Length = 929

 Score = 63.0 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +  V + AG GKT  +V+RV+ L+   +   + +  L +T  A  E+  R+ + +    
Sbjct: 468 HNIVVKSGAGCGKTREIVKRVVWLISEKDVDANKITILAYTNDAVKELKQRIRKKLEKLK 527

Query: 91  HLS 93
            L+
Sbjct: 528 PLN 530


>gi|23308869|ref|NP_600969.2| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21324534|dbj|BAB99158.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
          ATCC 13032]
          Length = 785

 Score = 63.0 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++   +     A + A AG+GK+ ++++R+  L  A  +P  +  L+ T AAA
Sbjct: 15 QQREAITTDNPLAIIQAGAGTGKSTVILERIEYLCAAGTNPEEIAVLSFTNAAA 68


>gi|257386624|ref|YP_003176397.1| UvrD/REP helicase [Halomicrobium mukohataei DSM 12286]
 gi|257168931|gb|ACV46690.1| UvrD/REP helicase [Halomicrobium mukohataei DSM 12286]
          Length = 613

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 39  NAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+ RV  LL  + A    +L +++T+AAAAE+  R+ E +     ++   L
Sbjct: 14  GPGSGKTTALLDRVEELLSEDDADVRDILVVSYTRAAAAEIRERLAERL----DINPRSL 69

Query: 98  SAEITKIQGKKPNKSDMSK 116
              +  +  K     D+S+
Sbjct: 70  KGNVCTMHAKAYELLDLSR 88


>gi|306815654|ref|ZP_07449803.1| UvrD/REP helicase [Escherichia coli NC101]
 gi|305851316|gb|EFM51771.1| UvrD/REP helicase [Escherichia coli NC101]
          Length = 541

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          +Q LA D T S  ++A  GSGKT ++ +++  +  +      ++ +T T+ A++E+  R
Sbjct: 9  QQTLAIDYTGSMVITACPGSGKTTVIKEKIRNITASLPDHKGVIAITFTRKASSELERR 67


>gi|126664583|ref|ZP_01735567.1| Superfamily I DNA and RNA helicase [Marinobacter sp. ELB17]
 gi|126630909|gb|EBA01523.1| Superfamily I DNA and RNA helicase [Marinobacter sp. ELB17]
          Length = 757

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 47/222 (21%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T  ++ + S     A ++A AGSGKT  L  R+  LL     P+ +L L   ++A  +  
Sbjct: 14  TDEQRDIISAGFEHAVITAVAGSGKTTTLAWRIRYLLHQGHDPARMLVLMFNRSAKIDF- 72

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R L+ ++  S L+                                       ++T HA 
Sbjct: 73  ERKLQAVSGNSGLALPE------------------------------------IRTYHAM 96

Query: 140 CEAIMQQFPLEANITSHFA--IADEEQSK----KLIEEAKKSTLASIMLDNNEELKKAFY 193
              + ++F  E     +F+  I  +++      +L        LA  +  N +E  +   
Sbjct: 97  GLRLYRRFVRE-GYLPNFSANILSDQEINYQVFQLSRRLVPEDLAEELRRNKKEFIETAI 155

Query: 194 EILEI--SNDEDIETLISDI-ISNRTALKLIFFFFSYLWRRK 232
             ++   ++    E +  D+  + R    +  F     WR+ 
Sbjct: 156 GFIDRVKTSLSPAEIVFEDMEFTERQRYLIDLFHSFEQWRKG 197


>gi|261866494|gb|ACY02011.1| UvrD/REP helicase [Pseudomonas sp. J465]
          Length = 646

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
           L + +  +  +   P     + A AGSGK+  LV RV+ +L      P  L  ++ T A+
Sbjct: 105 LSAPSDEQWAMILSPHPLTRIFAGAGSGKSTSLVLRVVFMLCRLGIKPEQLTVISFTNAS 164

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITK 103
            AE+  ++L+++  +++  DE  + +  +
Sbjct: 165 CAELRGQLLKVLGFFNYPFDESQARQCVR 193


>gi|172064794|ref|YP_001812444.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
 gi|171998279|gb|ACB69195.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
          Length = 571

 Score = 62.6 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 86/232 (37%), Gaps = 38/232 (16%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAA 74
           ++ +   +Q   +   R     A  G+GKT  +  +  RLL     P+ ++  +T +K A
Sbjct: 4   MLDELNPQQREVALLRRHCVAIACPGAGKTKTIATKAARLL---EDPAAVVGAVTFSKDA 60

Query: 75  AAEMSHRVLEI-ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A E+  R+L I +              +   Q  +P      +ARH + +  +  G    
Sbjct: 61  ALELRERILAIAVPDAKRRLTAGTFHSLAFRQIGRPG-----RARHDIASDGDRFG---- 111

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
                    ++ +   E      + +   E++  +IE  K +   +    +  +L  A+ 
Sbjct: 112 ---------MLGRAIAELGF--EWKV---EEAVPIIERIKTNFGRAEPGSSEAKLYAAYQ 157

Query: 194 EILEISNDEDIETLISDIIS----------NRTALKLIFFFFSYLWRRKIIE 235
           E LE +   D + ++   ++            T L +  F  +   + + +E
Sbjct: 158 EALERNGKIDFQDMLRLAVAGMESGDIRPYRFTDLLVDEFQDTDPLQYRWVE 209


>gi|226323115|ref|ZP_03798633.1| hypothetical protein COPCOM_00887 [Coprococcus comes ATCC 27758]
 gi|225208305|gb|EEG90659.1| hypothetical protein COPCOM_00887 [Coprococcus comes ATCC 27758]
          Length = 278

 Score = 62.6 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            +  +    +   +  V+AN GSGKT+ +V+++ ++L        ++ ++ T  A+ E+
Sbjct: 2  NQQMNKKAILNYNGNTVVTANPGSGKTYTVVEKIGKVLHDLPSYKGIIAISFTNKASDEL 61

Query: 79 SHR 81
            R
Sbjct: 62 KKR 64


>gi|152987976|ref|YP_001349289.1| putative helicase [Pseudomonas aeruginosa PA7]
 gi|150963134|gb|ABR85159.1| probable helicase [Pseudomonas aeruginosa PA7]
          Length = 649

 Score = 62.6 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           +  + ++S    EQ       +    + A AGSGK+  LV RV+ +L      P  L  +
Sbjct: 103 AALLGVVSPPSEEQWAMILCRQPLARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVI 162

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           + T A+ A++  ++L ++  W +  D   + +  +
Sbjct: 163 SFTNASCAQLREQLLRVLAHWEYPFDAAQARQCVR 197


>gi|238027963|ref|YP_002912194.1| UvrD/REP helicase [Burkholderia glumae BGR1]
 gi|237877157|gb|ACR29490.1| UvrD/REP helicase [Burkholderia glumae BGR1]
          Length = 945

 Score = 62.6 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
           T+ +            V A+AGSGKT  +V +    +      P  ++ L   K AA E+
Sbjct: 213 TEEQARAVICFDNRVQVVASAGSGKTSTMVAKAAYAIDRGFVAPKRIVMLAFNKQAADEL 272

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + R  +     +  +  + ++    +  +   K+   K
Sbjct: 273 ADRAAKSFERLAMSNVAVEASTFHALGLRIIGKATKEK 310


>gi|146279543|ref|YP_001169701.1| hypothetical protein Rsph17025_3526 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557784|gb|ABP72396.1| hypothetical protein Rsph17025_3526 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 617

 Score = 62.6 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 13/137 (9%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
            +++ +   L A  +  RS  V+A AG+GKT  L Q+   LL       P  +L ++  +
Sbjct: 13  GVAELEDRALQALRETERSVCVTAGAGAGKTEFLAQKAAYLLQTGLCPAPKRILAISFKR 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AAA ++ RV               +     +     +K  + + R  L      P   +
Sbjct: 73  DAAATLAERVKRRCA-------PEQARRFISVTFDAFSKGLIDQFRKALPDAYRPPANYR 125

Query: 133 VQ--TIHAFCEAIMQQF 147
           +   T  +     +++ 
Sbjct: 126 IGFPTTDSV-NDFLRRH 141


>gi|118497371|ref|YP_898421.1| DNA/RNA helicase superfamily I protein [Francisella tularensis
           subsp. novicida U112]
 gi|195536061|ref|ZP_03079068.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208779165|ref|ZP_03246511.1| UvrD/REP helicase family protein [Francisella novicida FTG]
 gi|118423277|gb|ABK89667.1| DNA and RNA helicases Superfamily I protein [Francisella novicida
           U112]
 gi|194372538|gb|EDX27249.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208744965|gb|EDZ91263.1| UvrD/REP helicase family protein [Francisella novicida FTG]
          Length = 688

 Score = 62.2 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 52/205 (25%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  T  +Q + + D  + A VSA AGSGKT  L+ R+  L+     P+ +L L +   +A
Sbjct: 1   MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMY-NKSA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                        ++    ++L+ EI K+                          + V+T
Sbjct: 60  Q----------LDFATRLKKVLNPEIAKL--------------------------VNVRT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+   + +Q F       + F  AD    K L E    + +A ++    +E     + I
Sbjct: 84  MHSLGNSFLQAFAK-----AGFVKAD----KILKEYEVDAIIAKLLKTYQKE-----FNI 129

Query: 196 LEISNDEDIETLISDIISNRTALKL 220
            +  ++E IET  + I   ++ L L
Sbjct: 130 TKDIDNERIETFKNYISLLKSDLSL 154


>gi|298674325|ref|YP_003726075.1| UvrD/REP helicase [Methanohalobium evestigatum Z-7303]
 gi|298287313|gb|ADI73279.1| UvrD/REP helicase [Methanohalobium evestigatum Z-7303]
          Length = 1085

 Score = 62.2 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 46/171 (26%), Gaps = 66/171 (38%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQR--------------VLRLLLANA 60
           +L +    ++           V           L                 ++  L    
Sbjct: 5   NLATLKPKQRQAVEHSEGPLLV-----------LAGAGTGKTTTITTKIAYMIEYL--GV 51

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  +L LT ++ AA  M  +V E++     +                            
Sbjct: 52  PPEEILALTFSRDAAKNMQQKVQELVGRRRDV---------------------------- 83

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
                       V T H+FC  ++++ P E  ++ +F I ++      +  
Sbjct: 84  -----------NVSTFHSFCAELLREHPDECGVSENFTIYEDMDMAIYLHR 123


>gi|121582857|ref|YP_973299.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120596119|gb|ABM39557.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 554

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 43/151 (28%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTK 72
           D ++   +  L A +  RS  ++A  G+GKT +L QR   LL       P  +L ++   
Sbjct: 11  DGLTLEPNALLAAQEVLRSLALTAGPGAGKTEMLAQRADFLLRTGTSRYPQRILAISFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+  +  RV +   A                                     E    L 
Sbjct: 71  DASRNLKDRVRKRCGA-------------------------------------ELAARLD 93

Query: 133 VQTIHAFCEAIMQQF-PLEAN---ITSHFAI 159
             T HAF + I+ +F P+      +   + I
Sbjct: 94  SHTFHAFAKRIIDRFRPILTGRDALNPDYTI 124


>gi|330889434|gb|EGH22095.1| UvrD/REP helicase [Pseudomonas syringae pv. mori str. 301020]
          Length = 925

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++  ++E ++  D      V+A+AGSGKT  +V +    +      P  ++ L   K AA
Sbjct: 199 LNDEQAEAVICFDNR--VQVAASAGSGKTSTMVAKAAYAIDRGFFDPKEIVMLAFNKDAA 256

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            E+  R  +          ++ +    ++       +   K R
Sbjct: 257 KELGERAEQSFKRLGMEGVKVRAKTFHRLGLAIIGYATKKKPR 299


>gi|307628251|gb|ADN72555.1| pathogenesis-related protein [Escherichia coli UM146]
          Length = 612

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 50/126 (39%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS------TLLCLTHTKAAAAEMSHRVLEI 85
            S  + A AGSGKT  LV  VL ++L +           +  +T+T AA  E+  RV   
Sbjct: 24  HSFLLYAGAGSGKTRTLVN-VLEMILKSHSEEFRLRGKRIAVITYTNAACDEIKRRVK-- 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                                                 +++      V TIH+F   +++
Sbjct: 81  -----------------------------------FNKLID------VSTIHSFLWELIR 99

Query: 146 QFPLEA 151
               + 
Sbjct: 100 HHSSDI 105


>gi|118366249|ref|XP_001016343.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89298110|gb|EAR96098.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1536

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 7  FQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
          +Q+++ +   I  ++ +  +  SD      + A AGSGKT  LV R+  L+     P  +
Sbjct: 12 YQDYNGSECEIRPSQEQLKVILSDLNEDQKIIACAGSGKTTTLVIRLKYLIDQGVQPEQI 71

Query: 66 LCLTHTKAAAAEMSHRVLEIIT 87
          L  T+   A   +  R  EII 
Sbjct: 72 LVTTYNVDAGKNLKKRAKEIIG 93


>gi|254374192|ref|ZP_04989674.1| hypothetical protein FTDG_00355 [Francisella novicida GA99-3548]
 gi|151571912|gb|EDN37566.1| hypothetical protein FTDG_00355 [Francisella novicida GA99-3548]
          Length = 688

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 43/214 (20%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  T  +Q + + D  + A VSA AGSGKT  L+ R+  L+     P+ +L L +   +A
Sbjct: 1   MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMY-NKSA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                        ++    ++L+ EI K+                          + V+T
Sbjct: 60  Q----------LDFATRLKKVLNPEIAKL--------------------------VNVRT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML--DNNEELKKAFY 193
           +H+   + +Q F  +A       I  E +   +I +  K+      +  D + E  + F 
Sbjct: 84  MHSLGNSFLQAFA-KAGFVKADKILKEYEVDAIIAKLVKTYQKEFNITKDIDNERIETFK 142

Query: 194 EILE-ISNDEDIET-LISDIISNRTALKLIFFFF 225
             +  + +D  ++   + ++ S    L    F  
Sbjct: 143 NYISLLKSDLSLDNSKLKELNSKEKKLLDKIFSQ 176


>gi|302845569|ref|XP_002954323.1| hypothetical protein VOLCADRAFT_95124 [Volvox carteri f.
           nagariensis]
 gi|300260528|gb|EFJ44747.1| hypothetical protein VOLCADRAFT_95124 [Volvox carteri f.
           nagariensis]
          Length = 177

 Score = 62.2 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           S   D +++ +   +LAS+  ++  V A  GSGKT ++  R   L+         +L +T
Sbjct: 66  SSRTDKLNKDQLAAVLASE--QTVRVQAGPGSGKTRVVAARAQHLINERGVEARRILAIT 123

Query: 70  HTKA 73
            T  
Sbjct: 124 FTNK 127


>gi|90407538|ref|ZP_01215720.1| superfamily I DNA and RNA helicase [Psychromonas sp. CNPT3]
 gi|90311348|gb|EAS39451.1| superfamily I DNA and RNA helicase [Psychromonas sp. CNPT3]
          Length = 969

 Score = 62.2 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65
           F+   + ++    T  ++        +  + A AG+GKT ++V R   LL +  A  S +
Sbjct: 176 FKTFFDDVESKPLTLKQRRACVIDDDNNLLLAGAGTGKTSVMVGRAGYLLNSLQAQHSDV 235

Query: 66  LCLTHTKAAAAEMSHRVLEIITA---WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           L L + +AAA EM  R+++ +      +     +  + I +++G KP  S  +       
Sbjct: 236 LLLAYGRAAADEMDARIVDKLRTDKISATTFHSLGQSIIAQVEGAKPCLSIFAGDEKAKA 295

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFP 148
             ++T     +    A+C  I++ F 
Sbjct: 296 KWIQTYFEGLIYNNEAYCSLILEYFS 321


>gi|134302306|ref|YP_001122275.1| UvrD/REP helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050083|gb|ABO47154.1| UvrD/REP helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 688

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 52/205 (25%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  T  +Q + + D  + A VSA AGSGKT  L+ R+  L+     P+ +L L +   +A
Sbjct: 1   MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMY-NKSA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                        ++    ++L+ EI K+                          + V+T
Sbjct: 60  Q----------LDFATRLKKVLNPEIAKL--------------------------VNVRT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+   + +Q F       + F  AD    K L E    + +A ++    +E     + I
Sbjct: 84  MHSLGNSFLQAFAK-----AGFVKAD----KILKEYEVDAIIAKLLKTYQKE-----FNI 129

Query: 196 LEISNDEDIETLISDIISNRTALKL 220
            +  ++E IET  + I   ++ L L
Sbjct: 130 TKDIDNERIETFKNYISLLKSDLSL 154


>gi|328676858|gb|AEB27728.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Francisella cf.
           novicida Fx1]
          Length = 688

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 52/205 (25%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  T  +Q + + D  + A VSA AGSGKT  L+ R+  L+     P+ +L L +   +A
Sbjct: 1   MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMY-NKSA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                        ++    ++L+ EI K+                          + V+T
Sbjct: 60  Q----------LDFATRLKKVLNPEIAKL--------------------------VNVRT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+   + +Q F       + F  AD    K L E    + +  ++    +E     + I
Sbjct: 84  MHSLGNSFLQAFA-----NAGFVKAD----KILKEYEVDAIITKLLKTYQKE-----FNI 129

Query: 196 LEISNDEDIETLISDIISNRTALKL 220
            +  ++E IET  + I   ++ L L
Sbjct: 130 TKDIDNERIETFKNYISLLKSDLSL 154


>gi|313127496|ref|YP_004037766.1| ATP-dependent DNA helicase, rep family [Halogeometricum borinquense
           DSM 11551]
 gi|312293861|gb|ADQ68321.1| ATP-dependent DNA helicase, Rep family [Halogeometricum borinquense
           DSM 11551]
          Length = 616

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 39  NAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+ RV  +L  +      +L +++T+AAAAE+  R+ E +     +S   L
Sbjct: 14  GPGSGKTTALLDRVEEMLEDDDVTIRDILVVSYTRAAAAEIRERLAERL----DISPRAL 69

Query: 98  SAEITKIQGKKPNKSDMSK 116
              +  +  K     D+S+
Sbjct: 70  QGNVATMHAKAYELLDLSR 88


>gi|190574929|ref|YP_001972774.1| putative helicase IV [Stenotrophomonas maltophilia K279a]
 gi|190012851|emb|CAQ46480.1| putative helicase IV [Stenotrophomonas maltophilia K279a]
          Length = 919

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
           T+ +            V A AGSGKT  +V +    +      P  ++ L   K AA E+
Sbjct: 216 TEEQARAVICFDNRVQVVAAAGSGKTSTMVAKAAYAIDRGFVEPERIVMLAFNKDAAKEL 275

Query: 79  SHRVLEIITAWSHLSDEILS--------AEITKIQGKKPNKSDMSKARHL-LITILETPG 129
             R           +  + +        A I K  G+KP+  + +    L    + E   
Sbjct: 276 EERAQRTFDRLGMGNTVVEARTFHALGLAIIAKATGRKPDIPEWTIDATLGFNKLAELVD 335

Query: 130 GLKVQTIH 137
            LK ++IH
Sbjct: 336 DLKDRSIH 343


>gi|332184148|gb|AEE26402.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family, Francisella type
          [Francisella cf. novicida 3523]
          Length = 688

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +  T  +Q + + D T+ A VSA AGSGKT  L+ R+  L+     P+ +L L + K+A 
Sbjct: 1  MQYTAEQQKIINHDITKHALVSAVAGSGKTQTLIARIEYLVSNQVAPNRILVLMYNKSAQ 60

Query: 76 AEMSHRVLEIIT 87
           + + R+ +++ 
Sbjct: 61 LDFATRLKKVLK 72


>gi|224457272|ref|ZP_03665745.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 617

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 37/108 (34%)

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV   +                          D  K++         
Sbjct: 1   MTFTNKAAKEMQERVKSRL--------------------------DKEKSK--------- 25

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             GL + T H+   +I+++   E     +F + D   S  LI +    
Sbjct: 26  --GLMISTFHSLGLSILKKHFNELGYKKNFTLFDSHDSLALIYDIAYD 71


>gi|91209335|ref|YP_539321.1| hypothetical protein UTI89_C0288 [Escherichia coli UTI89]
 gi|91070909|gb|ABE05790.1| hypothetical protein UTI89_C0288 [Escherichia coli UTI89]
          Length = 612

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 50/126 (39%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPS------TLLCLTHTKAAAAEMSHRVLEI 85
            S  + A AGSGKT  LV  VL ++L +           +  +T+T AA  E+  RV   
Sbjct: 24  HSFLLYAGAGSGKTRTLVN-VLEMILKSHSEEFRLRGKRIAVITYTNAACDEIKRRVK-- 80

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                                                 +++      V TIH+F   +++
Sbjct: 81  -----------------------------------FNKLID------VSTIHSFLWELIR 99

Query: 146 QFPLEA 151
               + 
Sbjct: 100 YHSSDI 105


>gi|313106395|ref|ZP_07792629.1| putative helicase [Pseudomonas aeruginosa 39016]
 gi|310879131|gb|EFQ37725.1| putative helicase [Pseudomonas aeruginosa 39016]
          Length = 646

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
           + T+ ++S    EQ       +    + A AGSGK+  LV RV+ +L      P  L  +
Sbjct: 101 AATLGVVSPPSEEQWAMILCRQPLARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVI 160

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           + T A+ A++  ++L ++  W +  D   + +  +
Sbjct: 161 SFTNASCAQLREQLLRVLAHWQYPFDAAQARQCVR 195


>gi|307314255|ref|ZP_07593863.1| UvrD/REP helicase [Escherichia coli W]
 gi|306906078|gb|EFN36597.1| UvrD/REP helicase [Escherichia coli W]
 gi|315062948|gb|ADT77275.1| hypothetical protein ECW_m3937 [Escherichia coli W]
 gi|323376459|gb|ADX48727.1| UvrD/REP helicase [Escherichia coli KO11]
          Length = 541

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMS 79
          ++Q LA D  +S  ++A  GSGKT ++ +++  +      P    ++ +T T+ A++E+ 
Sbjct: 8  TQQRLAIDYPKSMVITACPGSGKTTVIKEKIRNI--TGCLPEHKGVIAITFTRKASSELE 65

Query: 80 HR 81
           R
Sbjct: 66 RR 67


>gi|257083435|ref|ZP_05577796.1| UvrD/REP helicase [Enterococcus faecalis Fly1]
 gi|256991465|gb|EEU78767.1| UvrD/REP helicase [Enterococcus faecalis Fly1]
          Length = 631

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 46/248 (18%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + +   +  ++  ++  AGSGKT+ L+  ++  +       +++C+T+T  A AE+ +R
Sbjct: 11  QQAIECIEQGKNFILTGGAGSGKTYSLIS-LIEEVGEKYPSKSIVCITYTNNAVAEIRNR 69

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNK--SDMSKARHLLITILETPGGLKVQTIHAF 139
           +      +     E + + I K Q +  N     ++    +           ++ TI  F
Sbjct: 70  ITND-KLYVSTIHEFVWSIIAKYQKEIKNTLVELINDESQMKFKAPRDFEENQMITIDYF 128

Query: 140 -----------------------------CEAIMQQFPLEANI---TSHFAIADE-EQSK 166
                                         E I ++FP    I    ++F   DE + + 
Sbjct: 129 SENKIVYDEYYSLRSDADSKVSHDHILILAEKIFEKFPKICGILKDVANFIFVDEYQDTD 188

Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFS 226
            LI+      L  I     + +   F + ++   D  +  +I D       L  I  F +
Sbjct: 189 PLIKNI---LLTHINQSTKKNIVGFFGDSMQAIYDNGLGEIIDD------KLTYINKFQN 239

Query: 227 YLWRRKII 234
                 +I
Sbjct: 240 RRNPESVI 247


>gi|330973610|gb|EGH73676.1| pathogenesis-related protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 623

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 77/241 (31%), Gaps = 66/241 (27%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVL--------RLLLANAHPSTLLCLTHTKAA 74
           ++ L+ D  +S ++ A AGSGKTH LV+ V         RL         +  +T+T AA
Sbjct: 20  QECLSLDHPKSFFLYAGAGSGKTHSLVEAVKNLKSRERQRLTFEG---RQIAIITYTNAA 76

Query: 75  AAEMSHR--------------------------VLEIITAWSHLSDEILSAEITKIQGKK 108
           + E+S R                          + E + A        L+ ++ K +G+ 
Sbjct: 77  SEEISRRLEHDPLVVVSTIHAFSWRMIQGFNTDIREWLRAKLTRDIGELNEKLGKARGQN 136

Query: 109 PNKSDMSKARHLLITILETPGGLKVQTI---------------HAFCEAIMQQFPLEANI 153
                   +R      L++     + T                H+    ++Q        
Sbjct: 137 KTFLANQASRDSKARRLDSLDE--ISTFIYSPTGDNRGRQALNHS---EVIQMAAAFIQQ 191

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
                +  +     LI+E+          D    L  AF +   +  D     L+ D + 
Sbjct: 192 PPLLNVMADLHPVLLIDES---------QDTYGPLMDAFLQAQSLIPDRFCLGLLGDTMQ 242

Query: 214 N 214
            
Sbjct: 243 R 243


>gi|315647372|ref|ZP_07900485.1| hypothetical protein PVOR_18694 [Paenibacillus vortex V453]
 gi|315277574|gb|EFU40903.1| hypothetical protein PVOR_18694 [Paenibacillus vortex V453]
          Length = 543

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          ++ T  EQ    D T    V AN GSGKT  + Q+++ +L        ++ +++T  A+ 
Sbjct: 1  MNPTP-EQKEIIDYTGHIVVIANPGSGKTFTISQKIISILGELEFYQGVIAISYTNKASR 59

Query: 77 EMSHR 81
          E+  R
Sbjct: 60 ELEKR 64


>gi|261885007|ref|ZP_06009046.1| UvrD/REP helicase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 313

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 28/181 (15%)

Query: 51  RVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-----LEIITAWSHLSDEILSAEITKIQ 105
           R+  LL     P  +L LT T  AA+EM  R+      + + +    +   +S  + K  
Sbjct: 3   RIAHLLNLGMKPERILLLTFTNKAASEMIDRLSNYFSAKTVGSIMAGTFHSVSNSLLKKL 62

Query: 106 GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI--MQQF--PLEANITSHF---A 158
            K       S+ + LL +++E                I  ++ +      ++ S F    
Sbjct: 63  NKGVILKQPSELKTLLKSLVERRE----------FHRIGEVKAYSGAYLYDVYSLFCNSC 112

Query: 159 IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218
           + DE  ++   E     T   +  +  E++ + F E     N  D   L+  +   R  L
Sbjct: 113 VNDESFAQWFSENYSDQT---VYAEVYEDILREFEEQKSRFNYADFNDLLIKM---RNEL 166

Query: 219 K 219
           K
Sbjct: 167 K 167


>gi|260943844|ref|XP_002616220.1| hypothetical protein CLUG_03461 [Clavispora lusitaniae ATCC 42720]
 gi|238849869|gb|EEQ39333.1| hypothetical protein CLUG_03461 [Clavispora lusitaniae ATCC 42720]
          Length = 915

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 42/145 (28%)

Query: 7   FQEHSETIDLIS--QTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAH 61
           F   SE  D +S   + S+    + P R+     + A  GSGKT  L  R+  ++     
Sbjct: 24  FDSASEEPDQVSIRVSDSQYDAITYPARADEVVRIVAAPGSGKTFTLTARIAHMVQNGTD 83

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           P+ +L L         M++R           S E +   +T I GK   +          
Sbjct: 84  PAEILVLC--------MANR-----------SVEAVKKALTAIIGKDEAQ---------- 114

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQ 146
                    + + T H+F   +++Q
Sbjct: 115 --------RVSISTFHSFSAMVLEQ 131


>gi|121610604|ref|YP_998411.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121555244|gb|ABM59393.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 621

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +E    +     +Q   +         A  GSGKT  L  +    L       T+  +T
Sbjct: 3  MNELQQQLDGLAPQQKAVALHDGHCLAIAAPGSGKTKTLAVKAALNLSRG---RTVAAVT 59

Query: 70 HTKAAAAEMSHRVLEIITAWS 90
           T+ AA E+  R++ I    +
Sbjct: 60 FTRDAALELRERIILIAGKQA 80


>gi|302769962|ref|XP_002968400.1| hypothetical protein SELMODRAFT_409192 [Selaginella
          moellendorffii]
 gi|300164044|gb|EFJ30654.1| hypothetical protein SELMODRAFT_409192 [Selaginella
          moellendorffii]
          Length = 676

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
          ++  T+S+    + P +    + A AGSGKT +L  R+L L+        +L +T
Sbjct: 1  MVELTESQVAAVTAPISCPLMILAAAGSGKTLVLCYRILHLIRNGVPAKEILAVT 55


>gi|94314406|ref|YP_587615.1| putative ATP-dependent DNA helicase Rep [Cupriavidus metallidurans
           CH34]
 gi|93358258|gb|ABF12346.1| putative ATP-dependent DNA helicase Rep [Cupriavidus metallidurans
           CH34]
          Length = 591

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 46/164 (28%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59
           M    ++ + +E +    +    Q  A +      V A  GSGKT  L  ++ RLL  + 
Sbjct: 1   MSNRAAYLQAAEEL----RDNPGQWAAYESRGHCVVLAGPGSGKTKTLTTKMARLLAEDV 56

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           A P  + C+T+    A E+  R+  +                                  
Sbjct: 57  AEPRGVACITYNNECARELEARLSSL---------------------------------- 82

Query: 120 LLITILETPGGLKVQTIHAFCE-AIMQQFPLEA--NITSHFAIA 160
                +E  G + V T+H+F    ++  +   A   +   F +A
Sbjct: 83  ----GVEPGGRVFVGTVHSFSLTQVILPYAKVAGLGLPDDFRVA 122


>gi|294506712|ref|YP_003570770.1| ATP-dependent DNA helicase PcrA [Salinibacter ruber M8]
 gi|294343040|emb|CBH23818.1| ATP-dependent DNA helicase PcrA [Salinibacter ruber M8]
          Length = 847

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ID    T  +  +       A V A AG+GKT  LV R+ RL+      P  +L  + +
Sbjct: 1  MIDREQLTDEQTRIVQHGRGPALVFAVAGAGKTTSLVHRIARLVTQGGVAPGDILASSFS 60

Query: 72 KAAAAEM 78
          +A A +M
Sbjct: 61 RATAQDM 67


>gi|254228202|ref|ZP_04921631.1| Superfamily I DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262394061|ref|YP_003285915.1| DNA helicase [Vibrio sp. Ex25]
 gi|151939275|gb|EDN58104.1| Superfamily I DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262337655|gb|ACY51450.1| DNA helicase [Vibrio sp. Ex25]
          Length = 634

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ++ IS    E        +   +S  AGSGKT+ LV+ VL+ ++ ++    + C+T+T +
Sbjct: 8   LNKISDESIEAFKLIKDKKHFLLSGGAGSGKTYSLVE-VLKAVINDSPSLNIACITYTNS 66

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A AE+  RVL      S + D +              K+  S+ +  LI ++  P  L +
Sbjct: 67  AVAEIEDRVLHDNLYVSTIHDFL----------WNNIKNFQSEIKETLIELINEPEQLLI 116


>gi|306825344|ref|ZP_07458684.1| DNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432282|gb|EFM35258.1| DNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 641

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            ++  +   AGSGKT+ L+  ++  +       +++C+T+T  A AE+  R++      S
Sbjct: 20  GQNFILEGGAGSGKTYSLIS-IIEKISMEEPKKSIVCITYTNNAVAEIRSRIINDNLRVS 78

Query: 91  HLSDEI--LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            + + I  +     K   +   +     A+ L +   E  G   + 
Sbjct: 79  TIHEFIWHVIENFQKEIKECLVELINDDAKILFVAPKEVLGEETIS 124


>gi|28867288|ref|NP_789907.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850522|gb|AAO53602.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 634

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 43/156 (27%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHR 81
           +++ S   RS  V A  G+GKT +L QR   LL   A   P  +L ++  + AA+ ++ R
Sbjct: 27  EVVCSHVNRS--VIAGPGAGKTELLAQRAAYLLQTGAAPAPRRILAISFKRDAASNLASR 84

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V +                                         +  G L   T  AF +
Sbjct: 85  VRKRCHP-------------------------------------DHAGRLDSMTFDAFAK 107

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           +++ +F     +   +    + +     E   K  L
Sbjct: 108 SLVDRFGQS--LPERWRPRPDYEITSYYERDYKDFL 141


>gi|325918664|ref|ZP_08180765.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
          35937]
 gi|325535114|gb|EGD07009.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
          35937]
          Length = 770

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 36/70 (51%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           T  +  +A+  T  A VSA AG+GKT  LV+R  RL+      S +LCL + K A  + 
Sbjct: 5  FTDEQIAVANHVTGHALVSAVAGAGKTTTLVERCRRLIATGIPESQILCLQYNKEAQLDF 64

Query: 79 SHRVLEIITA 88
          S R+   +  
Sbjct: 65 SSRLTRRMGT 74


>gi|194366252|ref|YP_002028862.1| UvrD/REP helicase [Stenotrophomonas maltophilia R551-3]
 gi|194349056|gb|ACF52179.1| UvrD/REP helicase [Stenotrophomonas maltophilia R551-3]
          Length = 917

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 1/111 (0%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65
            ++  + ++    T  +            V A+AGSGKT  +V +    +      P  +
Sbjct: 201 AKDFLDRVESKPLTDEQARAVICFDNRVQVVASAGSGKTSTMVAKAAYAIDRGFVEPERI 260

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + L   K AA E+  R              + +     +      K+   K
Sbjct: 261 VMLAFNKDAARELEERAQRCFDRLGMGDTVVEARTFHALGLAIVAKATGRK 311


>gi|254372735|ref|ZP_04988224.1| hypothetical protein FTCG_00303 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570462|gb|EDN36116.1| hypothetical protein FTCG_00303 [Francisella novicida GA99-3549]
          Length = 688

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 52/205 (25%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  T  +Q + + D  + A VSA AGSGKT  L+ R+  L+     P+ +L L +   +A
Sbjct: 1   MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMY-NKSA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                        ++    ++L+ EI K+                          + V+T
Sbjct: 60  Q----------LDFATRLKKVLNPEIAKL--------------------------VNVRT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+   + +Q F       + F  AD    K L E    + +  ++    +E     + I
Sbjct: 84  MHSLGNSFLQAFAK-----AGFVKAD----KILKEYEVDAIITKLLKTYQKE-----FNI 129

Query: 196 LEISNDEDIETLISDIISNRTALKL 220
            +  ++E IET  + I   ++ L L
Sbjct: 130 TKDIDNERIETFKNYISLLKSDLSL 154


>gi|256545275|ref|ZP_05472640.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
 gi|256399102|gb|EEU12714.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
          Length = 604

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 45/131 (34%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +   A        V A  GSGKT +L++R+ + L  +   S +L LT ++  A 
Sbjct: 1   MKFTSKQLQAAKHLDGPLLVLAIPGSGKTTMLLERI-KFLSEHIDSSKILNLTFSRIQAN 59

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +M  R     + +                                             TI
Sbjct: 60  DMKKRFDSKDSNF--------------------------------------------MTI 75

Query: 137 HAFCEAIMQQF 147
           HAFC  I++ +
Sbjct: 76  HAFCYLIIRNY 86


>gi|45187986|ref|NP_984209.1| ADR113Wp [Ashbya gossypii ATCC 10895]
 gi|44982803|gb|AAS52033.1| ADR113Wp [Ashbya gossypii ATCC 10895]
          Length = 708

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 37/194 (19%)

Query: 16  LISQTKSEQLLASDPTRSAW---VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           + + T S+  + + P        V A  GSGKT  L+ +V  L+      P+ +L L+ T
Sbjct: 1   MKALTTSQSRVVTHPYEPCTTVNVVAGPGSGKTVTLLHKVYNLVYEGIVAPNEILILSLT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A   ++ +++E                            ++  +    + ILE    +
Sbjct: 61  NKAVDNINEKLMETFQE---------------------ADCNLRWSAEERVEILEQ---I 96

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191
            V T H+    ++ +     N      I +E   + L+  A KS         ++   +A
Sbjct: 97  DVNTFHSLANKVVLENEGLVN------IIEENGWRSLMRLAGKSY---KGRSRHDWTPRA 147

Query: 192 FYEILEISNDEDIE 205
           F  +++   +  I+
Sbjct: 148 FARMIQDYKEGRIQ 161


>gi|322390911|ref|ZP_08064419.1| DNA helicase [Streptococcus parasanguinis ATCC 903]
 gi|321142424|gb|EFX37894.1| DNA helicase [Streptococcus parasanguinis ATCC 903]
          Length = 640

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 45/121 (37%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            ++  +   AGSGKT+ L+  ++  +       +++C+T+T  A AE+  R++       
Sbjct: 20  GQNFILEGGAGSGKTYSLIS-IIEKISMEEPKKSIVCITYTNNAVAEIRSRIIN------ 72

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                   L+V TIH F   +++ F  E
Sbjct: 73  --------------------------------------DNLRVSTIHDFIWHVIKNFQKE 94

Query: 151 A 151
            
Sbjct: 95  I 95


>gi|169834543|ref|YP_001693368.1| DNA helicase II [Clostridium botulinum B1 str. Okra]
 gi|169123091|gb|ACA46926.1| UvrD/REP helicase [Clostridium botulinum B1 str. Okra]
          Length = 697

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 38/138 (27%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           I  T  ++   +       V +  GSGKT   + R+  L+L  N +P+ + C++ +KAAA
Sbjct: 15  IKLTDKQKKAVTTSEGVVLVISVPGSGKTLSSIIRIGYLILVRNINPNLISCISFSKAAA 74

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R   I       S                                         T
Sbjct: 75  LEMKNRFNTIFGDSIKYSPHF-------------------------------------ST 97

Query: 136 IHAFCEAIMQQFPLEANI 153
           IH+ C  I + +    NI
Sbjct: 98  IHSLCYLISRTYFKMNNI 115


>gi|308198337|ref|XP_001386999.2| ATP-dependent DNA helicase HMI1, mitochondrial precursor
           [Scheffersomyces stipitis CBS 6054]
 gi|149388979|gb|EAZ62976.2| ATP-dependent DNA helicase HMI1, mitochondrial precursor [Pichia
           stipitis CBS 6054]
          Length = 864

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 38/119 (31%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P     V A  GSGKT  +  RV  ++   N  P  +L L+ T  A   +   +  I+  
Sbjct: 96  PNSILTVQAGPGSGKTFTMANRVAYMISHYNLEPHDILILSMTNRAVHSLRQTLDAIVGP 155

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                                                E  G ++++T H+FC +++ Q+
Sbjct: 156 -------------------------------------EVAGNIELRTFHSFCASVVDQY 177


>gi|312863721|ref|ZP_07723959.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|311101257|gb|EFQ59462.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
          Length = 318

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP--- 62
           +F  + E   L    + E     D   S    A AG+GKT+ L + +  +L +       
Sbjct: 2   AFTINPENKQLEIDIQQEINECLDNFESFCFDAGAGAGKTYALQKSIEHILKSEGEILKL 61

Query: 63  --STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
               +LC+T+T AA  E+  R+ +  +       E L   I  IQ +   +   +K +  
Sbjct: 62  SNQKILCITYTNAAKNEILDRLGKNSSVVVSTIHEFLWGFIA-IQQELLTEEHKNKIKGE 120

Query: 121 LITILETPGG 130
           L  I +   G
Sbjct: 121 LEKIEQKING 130


>gi|168184751|ref|ZP_02619415.1| UvrD/REP helicase [Clostridium botulinum Bf]
 gi|182672150|gb|EDT84111.1| UvrD/REP helicase [Clostridium botulinum Bf]
          Length = 697

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 38/138 (27%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           I  T  ++   +       V +  GSGKT   + R+  L+L  N +P+ + C++ +KAAA
Sbjct: 15  IKLTDKQKKAVTTSEGVVLVISVPGSGKTLSSIIRIGYLILVRNINPNLISCISFSKAAA 74

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R   I       S                                         T
Sbjct: 75  LEMKNRFNTIFGDSIKYSPHF-------------------------------------ST 97

Query: 136 IHAFCEAIMQQFPLEANI 153
           IH+ C  I + +    NI
Sbjct: 98  IHSLCYLISRTYFKMNNI 115


>gi|169834893|ref|YP_001715691.1| DNA helicase II [Clostridium botulinum A3 str. Loch Maree]
 gi|169409000|gb|ACA57410.1| UvrD/REP helicase [Clostridium botulinum A3 str. Loch Maree]
          Length = 697

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 38/138 (27%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75
           I  T  ++   +       V +  GSGKT   + R+  L+L  N +P+ + C++ +KAAA
Sbjct: 15  IKLTDKQKKAVTTSEGVVLVISVPGSGKTLSSIIRIGYLILVRNINPNLISCISFSKAAA 74

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM +R   I       S                                         T
Sbjct: 75  LEMKNRFNTIFGDSIKYSPHF-------------------------------------ST 97

Query: 136 IHAFCEAIMQQFPLEANI 153
           IH+ C  I + +    NI
Sbjct: 98  IHSLCYLISRTYFKMNNI 115


>gi|256844123|ref|ZP_05549610.1| excision endonuclease subunit UvrD [Lactobacillus crispatus
           125-2-CHN]
 gi|256614028|gb|EEU19230.1| excision endonuclease subunit UvrD [Lactobacillus crispatus
           125-2-CHN]
          Length = 620

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 43/159 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
            +S    A     +  V A  G+GKT +L Q+   L        P  +L ++  + AA  
Sbjct: 15  LESNAKQAIFTNDNILVQAGPGAGKTELLAQKASYLFQTGLCPAPFNILAISFKRDAAEN 74

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV + +        E  S  I+K                               T  
Sbjct: 75  IKDRVSKRVGK------EEGSRFISK-------------------------------TFD 97

Query: 138 AFCEAIMQQFPLEANIT----SHFAIADEEQSKKLIEEA 172
           AF + I+ +F L           + I+      K+ E A
Sbjct: 98  AFAKLIVDRFYLVLPKDLRPRPQYEISSNSTQTKIYERA 136


>gi|319946279|ref|ZP_08020519.1| DNA helicase [Streptococcus australis ATCC 700641]
 gi|319747661|gb|EFV99914.1| DNA helicase [Streptococcus australis ATCC 700641]
          Length = 640

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 45/121 (37%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            ++  +   AGSGKT+ L+  ++  +       +++C+T+T  A AE+  R++       
Sbjct: 20  GQNFILEGGAGSGKTYSLIS-IIEKISMEEPKKSIVCITYTNNAVAEIRSRIIN------ 72

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                   L+V TIH F   +++ F  E
Sbjct: 73  --------------------------------------DNLRVSTIHDFIWHVIKNFQKE 94

Query: 151 A 151
            
Sbjct: 95  I 95


>gi|126640935|ref|YP_001083919.1| ATP-dependent DNA helicase [Acinetobacter baumannii ATCC 17978]
          Length = 623

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 40/135 (29%)

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T T  AA EM  RV ++++                                      E 
Sbjct: 1   MTFTNKAAREMKERVTKLLSR-------------------------------------EE 23

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNE 186
             GL V T H F   +++       + ++F+I D +  K+++ +   +  L+    ++ E
Sbjct: 24  AKGLSVSTFHTFGLNLLRLELKNLPLKANFSILDADDCKRILMDLMHRDNLS--GAESKE 81

Query: 187 ELKKAFYEILEISND 201
            + KA  +I +  ND
Sbjct: 82  LIAKAMKKISDWKND 96


>gi|213585999|ref|ZP_03367825.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 43

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV 52
          + S  +D ++  + E + A  P  +  V A AGSGKT +LV R+
Sbjct: 2  DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRI 43


>gi|190895192|ref|YP_001985485.1| putative DNA helicase [Rhizobium etli CIAT 652]
 gi|190700853|gb|ACE94935.1| putative DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 1030

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 5/134 (3%)

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            E +          +   + KI  +  +   +++       +      +   TIH FC+ 
Sbjct: 3   REFVGRLRSSGPGKIPPALAKILTQPLDAEALARLEAAAPRL----DEITATTIHGFCQG 58

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           I++   L A +     + D   ++ L +E     L   + D+ +E   A   + +     
Sbjct: 59  IIRSHGLAAGLDPGSRVVDATVAEALFDEVLAEWLKDKLADSADE-DGAIATLAKDEPLG 117

Query: 203 DIETLISDIISNRT 216
            +E +    I  R 
Sbjct: 118 VVERVRELAILRRD 131


>gi|297581208|ref|ZP_06943132.1| superfamily II DNA helicase [Vibrio cholerae RC385]
 gi|297534524|gb|EFH73361.1| superfamily II DNA helicase [Vibrio cholerae RC385]
          Length = 1756

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 6    SFQEHS--ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP 62
            +  EHS    ++ ++    E ++ S P +S  V A  GSGK+ +++ R   LL +    P
Sbjct: 1104 ATSEHSWKRIVEALNNPTQESIVQSSPEQSLLVLAGPGSGKSKVIIHRCAYLLRVKQVDP 1163

Query: 63   STLLCLTHTKAAAAEMSHRVLEIITA 88
            + ++ L +   AA  +  R+++++  
Sbjct: 1164 AKVMLLCYNHNAALSLRKRLVDLLGR 1189


>gi|289624157|ref|ZP_06457111.1| UvrD/REP helicase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 952

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++  ++E ++  D      V+A+AGSGKT  +V +    +      P  ++ L   K AA
Sbjct: 224 LNDEQAEAVICFDNR--VQVAASAGSGKTSTMVAKAAYAIDRGFFQPKEIVMLAFNKDAA 281

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            E++ R  +          ++ +    ++       +   K R
Sbjct: 282 KELAERAEQSFERLGMDGVKVRAKTFHRLGLAIIGYATGKKPR 324


>gi|257084590|ref|ZP_05578951.1| DNA helicase [Enterococcus faecalis Fly1]
 gi|256992620|gb|EEU79922.1| DNA helicase [Enterococcus faecalis Fly1]
          Length = 610

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 41/157 (26%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEM 78
           +   L A   T +  V A  GSGKT +L Q+   LL  N    P  +L ++  K AA  +
Sbjct: 16  EEGALNAIKDTTNTLVKAGPGSGKTELLAQKANYLLQTNLCPAPQKILAISFKKDAAVNL 75

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           + RV + I          +                                     T  +
Sbjct: 76  AERVSKRIPENKVSQFYSV-------------------------------------TFDS 98

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           F + ++ +F     I   +  +D+ +    + E  ++
Sbjct: 99  FAKGLLDRFLH--GIPEEWRPSDDYEVDLSLNEFARA 133


>gi|118380926|ref|XP_001023625.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89305392|gb|EAS03380.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1027

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 19 QTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          Q   EQL    SD  ++  + A AGSGKT  L+ RV  L+  N  P  ++  T    AA 
Sbjct: 8  QLSEEQLKIVQSDIYQNQKIGACAGSGKTTTLIYRVKYLIDNNIEPQKIILTTFNVEAAQ 67

Query: 77 EMSHRVLEIIT 87
           +  +  +++ 
Sbjct: 68 NLKKKAEQVLQ 78


>gi|330869936|gb|EGH04645.1| UvrD/REP helicase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 914

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           ++  ++E ++  D      V+A+AGSGKT  +V +    +      P  ++ L   K AA
Sbjct: 192 LNDEQAEAVICFDNR--VQVAASAGSGKTSTMVAKAAYAIDRGFFQPKEIVMLAFNKDAA 249

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            E++ R  +          ++ +    ++       +   K R
Sbjct: 250 KELAERAEQSFERLGMDGVKVRAKTFHRLGLAIIGYATGKKPR 292


>gi|227872210|ref|ZP_03990573.1| UvrD/REP helicase [Oribacterium sinus F0268]
 gi|227841944|gb|EEJ52211.1| UvrD/REP helicase [Oribacterium sinus F0268]
          Length = 635

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 47/140 (33%)

Query: 14  IDLISQTKS--EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +D ++  K   E L       +  +   AGSGKT+ L+  ++  L        ++C+T+T
Sbjct: 1   MDTLTLEKEVLEALQCIKNGENFILEGGAGSGKTYSLIS-LINALTEELPDIKIVCITYT 59

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AE+  R+                                                L
Sbjct: 60  NNAVAEILSRIEN--------------------------------------------ENL 75

Query: 132 KVQTIHAFCEAIMQQFPLEA 151
            V TIH F  A+++++  E 
Sbjct: 76  WVSTIHEFIWALIRKYQYEI 95


>gi|28493484|ref|NP_787645.1| DNA helicase II [Tropheryma whipplei str. Twist]
 gi|28572404|ref|NP_789184.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
 gi|28410535|emb|CAD66921.1| putative ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
 gi|28476526|gb|AAO44614.1| DNA helicase II [Tropheryma whipplei str. Twist]
          Length = 585

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 13 TIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTH 70
          TID+ S    +Q  A    R    + A AGSGKT  + +R++  ++        ++ L+ 
Sbjct: 2  TIDVFSGLSDQQCDAVRTLRGPVKIIAGAGSGKTLTITRRIVNGIISNEYDSGHVMALSF 61

Query: 71 TKAAAAEMSHRVLE 84
          T+ A+ ++  R++E
Sbjct: 62 TRRASMQLRSRLVE 75


>gi|313667286|ref|YP_004049687.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
 gi|313153917|gb|ADR37767.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 638

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 52/189 (27%), Gaps = 45/189 (23%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
              + + +     A V A AGSGKT     R  RL         +  +T T +AA EM  
Sbjct: 2   NEHERVIAHEVGPAAVVAGAGSGKTRAATLRAARLARTG---ERVGLVTFTASAAEEMRQ 58

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RVL       H+                                          T H+  
Sbjct: 59  RVLAEDVPAKHV---------------------------------------WAGTFHSLA 79

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             I++QFP          +       +L        L     D + EL++   + L    
Sbjct: 80  FQILRQFPEAGGYEGFPEVLTPNDELRLFRRLWAELLDQ---DLDAELRRKLVKALGFFR 136

Query: 201 DEDIETLIS 209
               E  + 
Sbjct: 137 KARAEEALE 145


>gi|71908176|ref|YP_285763.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
 gi|71847797|gb|AAZ47293.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
          Length = 553

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 62/210 (29%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTK 72
           D +    +    A +  RS  ++A  G+GKT +L QR   LL      +P  +L ++   
Sbjct: 11  DGLKLEPNALAAARESQRSLALTAGPGAGKTEMLAQRADFLLRTGICRYPQRILAISFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+  +  RV                                           E    L 
Sbjct: 71  DASRNLKDRVRRRCG-------------------------------------FELAARLD 93

Query: 133 VQTIHAFCEAIMQQF-PLEAN---ITSHFAIADEE-------------------QSKKLI 169
             T HAF + ++ +F P+      +   ++I                       QS ++ 
Sbjct: 94  SHTFHAFAKRLIDRFRPVLTGRNALDPDYSIGSPRVQGRQIDFEDMVPLAVQILQSSEVA 153

Query: 170 EEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             A + T + + LD  ++     Y+++ I+
Sbjct: 154 RNAVRQTYSHVFLDEFQDCTDPQYQLIRIA 183


>gi|256422207|ref|YP_003122860.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
 gi|256037115|gb|ACU60659.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
          Length = 615

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 41/150 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
            +   +  +  + +  V A  G+GKT +L Q+   LL  N    P  +L ++  + AA  
Sbjct: 17  LERTAMNIARRSNNKLVVAGPGAGKTELLAQKACFLLQTNTCRFPYKILAISFKRDAAHN 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV +          E L                                     T  
Sbjct: 77  LKERVRDRCGDDLSKRFESL-------------------------------------TFD 99

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKK 167
           +F + I+ +F     +   + I+D+   + 
Sbjct: 100 SFAKQILDRFKQA--LPEGYKISDDYDVEL 127


>gi|121582897|ref|YP_973339.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120596159|gb|ABM39597.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 619

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D  S     Q  A+         A  GSGKT +L  +   LL  N   +    +T T+ +
Sbjct: 3   DYFSDLNEGQFQAASCETHCLTIAAPGSGKTKMLSAKASYLLSQNKTVT---AVTFTRDS 59

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A E+  R+++           + +     +    P K+  +    +L     +     V
Sbjct: 60  ALELRDRIVKQAGIDVMSRLLVGTFHSIDLLMAFPGKAKSAMGSKILRHSRSSLSQSWV 118


>gi|260102297|ref|ZP_05752534.1| ATP-dependent DNA helicase Rep [Lactobacillus helveticus DSM
          20075]
 gi|260083894|gb|EEW68014.1| ATP-dependent DNA helicase Rep [Lactobacillus helveticus DSM
          20075]
          Length = 143

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82
           ++  VSA  GSGKT  LV  +  ++  +        +L +T+T  AA  +S R+
Sbjct: 15 NQNFLVSAGPGSGKTEFLVNHIHHIIKESGKINTLRKVLAITYTNVAADNLSRRI 69


>gi|86605069|ref|YP_473832.1| UvrD/REP helicase domain-containing protein [Synechococcus sp.
           JA-3-3Ab]
 gi|86553611|gb|ABC98569.1| UvrD/REP helicase domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 706

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 39/159 (24%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
             +Q   +  +    ++A  GSGKT IL   +  L+L     P  +   T+ ++A + + 
Sbjct: 3   PEQQRALAYRSGPLGIAAVPGSGKTFILELLIADLILNRGVPPERIGVFTYMRSARSNLI 62

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
           +R+ + +    +      +                                    T+H+ 
Sbjct: 63  NRINQRLQQAGYPDRFTQA-----------------------------------FTLHSL 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
              ++++ P         +I +E + ++L+    ++ LA
Sbjct: 88  ALRVLREVP---GPWEELSILEEYEQERLLSRLCRAWLA 123


>gi|330943476|gb|EGH45819.1| UvrD/REP helicase, putative [Pseudomonas syringae pv. pisi str.
          1704B]
          Length = 584

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 16 LISQTKSE-QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
          +++ T+ +   LAS   +  ++ A  GSGKT ++   V R++   +  P+ +  LT + +
Sbjct: 1  MMTFTQEQLDYLASPLDQHVYLKACPGSGKTEVVGAMVARIVQGWSRSPAGIAVLTFSNS 60

Query: 74 AAAEMSHRVLEIITA 88
          A  E+ +R+ + +  
Sbjct: 61 ATDELRNRIHKYLGE 75


>gi|224457595|ref|ZP_03666068.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254875288|ref|ZP_05247998.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254841287|gb|EET19723.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 1168

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 18/152 (11%)

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T TK A  E+  RV + I             ++      +  +SD    +HL  ++LE 
Sbjct: 1   MTFTKDATQEIIGRVEKEIR------------DVLASYTDEKKESDKENYKHLKRSLLE- 47

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                + TIH FC+ ++ +    + I     ++ E  +  ++++  +      +  N  E
Sbjct: 48  IDEAAIFTIHGFCKKVLSEQAFASGI--EMDVSMEVDTSDILQKVVEDFFRKHI--NKSE 103

Query: 188 LKKAFYEILEISNDEDIETLISDII-SNRTAL 218
               + +I ++   E     + +II SN   L
Sbjct: 104 TNFGYLQIYKLHTPEKFLDDLENIIRSNYEIL 135


>gi|222478641|ref|YP_002564878.1| UvrD/REP helicase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451543|gb|ACM55808.1| UvrD/REP helicase [Halorubrum lacusprofundi ATCC 49239]
          Length = 614

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 39  NAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+ RV  +L    A    +L +++T+AAAAE+  R+ E +     +S   L
Sbjct: 12  GPGSGKTTALLDRVEGILDDGDADVRDVLVVSYTRAAAAEIRERLAERL----DISPRSL 67

Query: 98  SAEITKIQGKKPNKSDMSK 116
              +  +  K     D+S+
Sbjct: 68  QGNVCTMHAKAYELLDLSR 86


>gi|153002775|ref|YP_001368456.1| UvrD/REP helicase [Shewanella baltica OS185]
 gi|151367393|gb|ABS10393.1| UvrD/REP helicase [Shewanella baltica OS185]
          Length = 556

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 75/224 (33%), Gaps = 66/224 (29%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           MI H+++    +  D ++   + +    +  ++  ++A  G+GKT +L QR   LL    
Sbjct: 1   MIRHDNW----KPADGLTLEPNAERAVKECEKNLALTAGPGAGKTEMLAQRADFLLRTGT 56

Query: 61  --HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
             +P  +L ++    A++ +  RV                                    
Sbjct: 57  CRYPKRILAISFKVDASSNLKDRVTRRSGD------------------------------ 86

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQF-PLEANI---TSHFAIADEEQSKKLIE---- 170
                  E        T HAF + I+ +F P+   I    S + I      +K IE    
Sbjct: 87  -------ELSSRFDSYTFHAFAKRIIDRFRPILTGIYTLDSEYTIGSPRTPQKQIEFADL 139

Query: 171 ---------------EAKKSTLASIMLDNNEELKKAFYEILEIS 199
                           A + T   + LD  ++     YE L+I+
Sbjct: 140 VPLATRILQSSAVARNAIRQTYTDVFLDEFQDCTDIQYEFLKIA 183


>gi|319638496|ref|ZP_07993258.1| hypothetical protein HMPREF0604_00882 [Neisseria mucosa C102]
 gi|317400245|gb|EFV80904.1| hypothetical protein HMPREF0604_00882 [Neisseria mucosa C102]
          Length = 495

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +         D+ L+  I    G++  +    +    L   L       + TIH FC+
Sbjct: 29  LNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALSQFDNASIYTIHGFCQ 88

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLI--------EEAKKSTLASIMLDNNEELKKAFY 193
            +++ +           ++D+ + + LI        + A  +TLA ++ D     ++   
Sbjct: 89  RVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLAQLVFDRKCTPEEMLA 148

Query: 194 EILEISN 200
           EI   + 
Sbjct: 149 EIKSYTG 155


>gi|50290297|ref|XP_447580.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526890|emb|CAG60517.1| unnamed protein product [Candida glabrata]
          Length = 711

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 65/197 (32%), Gaps = 55/197 (27%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           +P  +  V A  GSGKT  L+ +V  L+   N HP  +L L+ T  A   +  ++  +  
Sbjct: 19  EPNSTLKVVAGPGSGKTTTLLHKVHHLIDSQNIHPDEILILSLTNKAVDNIFGKLTSVFY 78

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
             +   D     ++    G                            TIH     I    
Sbjct: 79  ELTDSDDAQHIEQVADKIG--------------------------CYTIHGLANKI---- 108

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN-----------EELKKAFYEI- 195
                      + + E +  +IEE     L+ ++  +            + L+K   E  
Sbjct: 109 -----------VTEREGTVSIIEENGWRGLSQLVSKDYWNKTRSPGKKTKRLEKLLSEYK 157

Query: 196 -LEISNDEDIETLISDI 211
               S+D+ I+ LI  +
Sbjct: 158 KQNKSSDDTIDKLIQIM 174


>gi|300712060|ref|YP_003737874.1| repair helicase [Halalkalicoccus jeotgali B3]
 gi|299125743|gb|ADJ16082.1| repair helicase [Halalkalicoccus jeotgali B3]
          Length = 612

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 39  NAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+ RV  LL       + +L +++T+AAAAE+  R+ E +     +S   L
Sbjct: 12  GPGSGKTTALLDRVEGLLERDEVAVNDVLVVSYTRAAAAEIRERLAERL----DISPRSL 67

Query: 98  SAEITKIQGKKPNKSDMSKA 117
              +  +  K     D+S+A
Sbjct: 68  QGNVCTMHAKAYELLDLSRA 87


>gi|331005824|ref|ZP_08329180.1| hypothetical protein IMCC1989_2485 [gamma proteobacterium IMCC1989]
 gi|330420363|gb|EGG94673.1| hypothetical protein IMCC1989_2485 [gamma proteobacterium IMCC1989]
          Length = 586

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 48/135 (35%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTK 72
           S+   +     D      + A AG+GKT+ L++ +  L+   A         + C+T+T 
Sbjct: 12  SEALEQLRSCIDKGLCFRLEAGAGAGKTYSLIESIRYLISNRADELLGNRQQIACITYTN 71

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A  E+ +R       ++                                          
Sbjct: 72  VAKNEIKNRTDHHPVIFAD----------------------------------------- 90

Query: 133 VQTIHAFCEAIMQQF 147
             TIH+FC +I+Q +
Sbjct: 91  --TIHSFCWSILQHY 103


>gi|160877520|ref|YP_001556836.1| UvrD/REP helicase [Shewanella baltica OS195]
 gi|160863042|gb|ABX51576.1| UvrD/REP helicase [Shewanella baltica OS195]
 gi|315269717|gb|ADT96570.1| UvrD/REP helicase [Shewanella baltica OS678]
          Length = 556

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 75/224 (33%), Gaps = 66/224 (29%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           MI H+++    +  D ++   + +    +  ++  ++A  G+GKT +L QR   LL    
Sbjct: 1   MIRHDNW----KPADGLTLEPNAERAVKECEKNLALTAGPGAGKTEMLAQRADFLLRTGT 56

Query: 61  --HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
             +P  +L ++    A++ +  RV                                    
Sbjct: 57  CRYPKRILAISFKVDASSNLKDRVTRRSGD------------------------------ 86

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQF-PLEANI---TSHFAIADEEQSKKLIE---- 170
                  E        T HAF + I+ +F P+   I    S + I      +K IE    
Sbjct: 87  -------ELSSRFDSYTFHAFAKRIIDRFRPILTGIYTLDSEYTIGSPRTPQKQIEFADL 139

Query: 171 ---------------EAKKSTLASIMLDNNEELKKAFYEILEIS 199
                           A + T   + LD  ++     YE L+I+
Sbjct: 140 VPLATRILQSSAVARNAIRQTYTDVFLDEFQDCTDIQYEFLKIA 183


>gi|258507444|ref|YP_003170195.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
 gi|257147371|emb|CAR86344.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
 gi|259648798|dbj|BAI40960.1| hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 595

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 5  NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
          N  Q  S  +     T  ++ +     R   V A  GSGKT +L  +VLRLL    +   
Sbjct: 2  NLMQIESILLHGAHFTAEQREVIQAIGR-IDVVAGPGSGKTTVLAAKVLRLLTTRNYEDK 60

Query: 65 -LLCLTHTKAAAAEMSHRV 82
           + C+THT  A  E+  R+
Sbjct: 61 GICCITHTNVAVKEILARL 79


>gi|227485083|ref|ZP_03915399.1| DNA helicase II [Anaerococcus lactolyticus ATCC 51172]
 gi|227236916|gb|EEI86931.1| DNA helicase II [Anaerococcus lactolyticus ATCC 51172]
          Length = 598

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 45/131 (34%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +   A+       V A  G+GKT +L++RV ++L     P+ +L LT ++  A 
Sbjct: 1   MKLTDIQNRAANFIDGPCLVLAVPGAGKTTMLLERV-KILSKITSPNKILTLTFSRTQAI 59

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +M++R                                             T     + TI
Sbjct: 60  DMNNR--------------------------------------------YTGDDTNIMTI 75

Query: 137 HAFCEAIMQQF 147
           HAFC  I++ +
Sbjct: 76  HAFCYLIIRNY 86


>gi|299148667|ref|ZP_07041729.1| ATP-dependent DNA helicase, UvrD/REP family [Bacteroides sp.
           3_1_23]
 gi|298513428|gb|EFI37315.1| ATP-dependent DNA helicase, UvrD/REP family [Bacteroides sp.
           3_1_23]
          Length = 612

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 54/157 (34%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR--------LLLANAHPSTL 65
           ID       E+ + S P +S ++ A AGSGKT+ LV  + +        LLL       +
Sbjct: 5   IDFQVDETLEKCILSTPRKSFFLFAGAGSGKTYSLVLLLKKIHNSIGKDLLLQG---KNV 61

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
             +T T AA  E+ +R                                           L
Sbjct: 62  AVITFTNAATDEIINR-------------------------------------------L 78

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
           +      + TIH+F   +++ +  +      F I ++
Sbjct: 79  DYSPIFHISTIHSFVWDVIKYYQADIKRLYCFYIEED 115


>gi|219666707|ref|YP_002457142.1| UvrD/REP helicase [Desulfitobacterium hafniense DCB-2]
 gi|219536967|gb|ACL18706.1| UvrD/REP helicase [Desulfitobacterium hafniense DCB-2]
          Length = 602

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 48/182 (26%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
            + +  +    +    V A AG GKT  ++ R+  L  +    +P  +L LT +  AA +
Sbjct: 20  DEKQLEVIFSGSHRLIVEAPAGYGKTTTMISRIAYLFASGGIPNPKRILGLTFSVNAALK 79

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +   V E + A     +  ++                                + V   H
Sbjct: 80  VKREVAEKLPALLGTQNSPIAIS----------------------------EKVTVTNYH 111

Query: 138 AFCEAIMQQFPLEA--------NITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEEL 188
            FC+ +++++            N+   F    + + ++      ++TL + +  D  EEL
Sbjct: 112 GFCKGVIKKYGFLIADALRKDVNL---FRTVSDSEIER------QATLKTALSADEYEEL 162

Query: 189 KK 190
           K 
Sbjct: 163 KS 164


>gi|300854835|ref|YP_003779819.1| putative ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300434950|gb|ADK14717.1| predicted ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 737

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 71/259 (27%), Gaps = 94/259 (36%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------------------------- 57
           ++    +   +  V A  G+GKT  ++ RV  L                           
Sbjct: 29  QRKAVLNGENNCIVIACPGAGKTQTIINRVDYLCRFGPIYNTDYVPNCLKTDDLQIMKKY 88

Query: 58  ---------------------ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
                                   +P  ++ +T T+AAA  M +R               
Sbjct: 89  LNDNSFKDVTAVNKIEHLLNSNKINPQNIVVITFTRAAALNMKNR--------------- 133

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                    I+I          T H+    I+++   E N    
Sbjct: 134 ------------------------YISIGNKEKSPFFGTFHSLFYNILKKHNKEIN---- 165

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
             I D  ++ ++++      L  I  +  +E+      +     + D   L    I    
Sbjct: 166 --IIDPYKAHEIVKNTLMYYLDFIGEERVKEVLNDISLLKNSETNID---LFKSKIDKSV 220

Query: 217 ALKLIFFFFSYLWRRKIIE 235
            LK    + +Y  R K+++
Sbjct: 221 FLKCFNEYENYKARNKLMD 239


>gi|110680616|ref|YP_683623.1| UvrD/REP helicase, putative [Roseobacter denitrificans OCh 114]
 gi|109456732|gb|ABG32937.1| UvrD/REP helicase, putative [Roseobacter denitrificans OCh 114]
          Length = 549

 Score = 60.3 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 43/152 (28%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHT 71
           +D ++   +    A++  R+  ++A  G+GKT +L QR   LL      +P  +L ++  
Sbjct: 10  VDGLTLEPNALAAATEIARNLALTAGPGAGKTEMLAQRADFLLRTGTCRYPRRILAISFK 69

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A+  +  RV +                                               
Sbjct: 70  TDASQNLKARVRKRCGPG-------------------------------------LAARF 92

Query: 132 KVQTIHAFCEAIMQQF-PLEAN---ITSHFAI 159
              T HAF + I+ +F P+ +    +   ++I
Sbjct: 93  DSYTFHAFAKRIIDRFRPVLSGRDALNPDYSI 124


>gi|12719018|gb|AAK02040.1|AF261825_9 putative helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 546

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 62/210 (29%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTK 72
           D ++   +  L A +  R   ++A  G+GKT +L QR   LL      +P  +L ++   
Sbjct: 4   DGLTLEPNALLAAKEQARCLALTAGPGAGKTEMLAQRADFLLRTGTCRYPKRILAISFKV 63

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+  +  R+                                           E      
Sbjct: 64  DASKNLKERIQRRCGQ-------------------------------------ELASRFD 86

Query: 133 VQTIHAFCEAIMQQFPLEA----NITSHFAIADEEQSKKLI------------------- 169
             T HAF + I+ +F +       + + ++I + + +++ I                   
Sbjct: 87  SYTFHAFAKRIIDRFRVVLTGNDALDTDYSIGERKVTRRQITFHDLVPLAIQILKASVVA 146

Query: 170 EEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             A + T + + LD  ++     YE+++++
Sbjct: 147 RNAIRQTYSDVFLDEFQDCTDQQYELVKVA 176


>gi|237743338|ref|ZP_04573819.1| UvrD/REP helicase [Fusobacterium sp. 7_1]
 gi|229433117|gb|EEO43329.1| UvrD/REP helicase [Fusobacterium sp. 7_1]
          Length = 633

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 45/128 (35%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
            L   +   +  +   AGSGKT+ L+  +  L++       ++C+T+T  A AE+  R+ 
Sbjct: 13  ALQCIEKGENFILEGGAGSGKTYSLISLIETLIIKLPEI-KIVCITYTNNAVAEIKSRI- 70

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                                                          L V TIH F   I
Sbjct: 71  -------------------------------------------DNENLWVSTIHEFIWYI 87

Query: 144 MQQFPLEA 151
           ++++  E 
Sbjct: 88  IKKYQKEI 95


>gi|238060919|ref|ZP_04605628.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
 gi|237882730|gb|EEP71558.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
          Length = 719

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
          L      ++   + P     + A AG+GKT  +  R+   +L        +L +T T
Sbjct: 11 LAGLDPEQRAAVTAPAGPVCILAGAGTGKTRAVTSRIAHRVLTGEVSGRHVLAVTFT 67


>gi|315924960|ref|ZP_07921177.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621859|gb|EFV01823.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 752

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 44/220 (20%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
            ++    +   A+       + A  GSGKT +++ R+  ++LA       +L LT ++A 
Sbjct: 43  GLALNAQQMAAAARVDGPTLLLAVPGSGKTTVIICRLAYMILACGIPAEHILSLTFSRAG 102

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           AA         +++W                            R L     E P   +  
Sbjct: 103 AA--------DLSSWY---------------------------RRLFGDAGEVP---RFS 124

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+F   +++ +         F I    +++ ++ +  K    +   D +    ++   
Sbjct: 125 TIHSFALGVIRAYERRY-RRRAFDIL--AETQPMLRKIYKQIHGTFPTDADMAEIESALT 181

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
           +    N    E  +++++        I   +    +RK +
Sbjct: 182 LAR--NQMLDEEAVAELMPEAVRFPQILARYEATKKRKRV 219


>gi|116049351|ref|YP_791846.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584572|gb|ABJ10587.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 530

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGK+  LV RV+ +L      P  L  ++ T A+ A++  ++L ++  W +  D
Sbjct: 11  IFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCAQLREQLLRVLAHWQYPFD 70

Query: 95  EILSAEITK 103
              + +  +
Sbjct: 71  AAQARQCVR 79


>gi|200386789|ref|ZP_03213401.1| UvrD/REP helicase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199603887|gb|EDZ02432.1| UvrD/REP helicase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 553

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 62/210 (29%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTK 72
           D ++   +  L A +  R   ++A  G+GKT +L QR   LL      +P  +L ++   
Sbjct: 11  DGLTLEPNALLAAKEQARCLALTAGPGAGKTEMLAQRADFLLRTGTCRYPKRILAISFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+  +  R+                                           E      
Sbjct: 71  DASKNLKERIQRRCGQ-------------------------------------ELASRFD 93

Query: 133 VQTIHAFCEAIMQQFPLEA----NITSHFAIADEEQSKKLI------------------- 169
             T HAF + I+ +F +       + + ++I + + +++ I                   
Sbjct: 94  SYTFHAFAKRIIDRFRVVLTGNDALDTDYSIGERKVTRRQITFHDLVPLAIQILKASVVA 153

Query: 170 EEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             A + T + + LD  ++     YE+++++
Sbjct: 154 RNAIRQTYSDVFLDEFQDCTDQQYELVKVA 183


>gi|218892722|ref|YP_002441591.1| putative helicase [Pseudomonas aeruginosa LESB58]
 gi|218772950|emb|CAW28762.1| probable helicase [Pseudomonas aeruginosa LESB58]
          Length = 530

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           + A AGSGK+  LV RV+ +L      P  L  ++ T A+ A++  ++L ++  W +  D
Sbjct: 11  IFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCAQLREQLLRVLAHWQYPFD 70

Query: 95  EILSAEITK 103
              + +  +
Sbjct: 71  AAQARQCVR 79


>gi|240139359|ref|YP_002963834.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
 gi|240009331|gb|ACS40557.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
          Length = 615

 Score = 59.5 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTK 72
           I   +     A  +  RS  ++A AG+GKT IL Q+   LL       P  +L ++  +
Sbjct: 13 GIDDLEDRAWTALRETGRSVAITAGAGAGKTEILAQKAAYLLQTGICPSPRRILAISFKR 72

Query: 73 AAAAEMSHRVLEIITAW 89
           AAA +  RV   +   
Sbjct: 73 DAAATLGDRVRLRVPEA 89


>gi|117928983|ref|YP_873534.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
 gi|117649446|gb|ABK53548.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
          Length = 1095

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 50/175 (28%), Gaps = 40/175 (22%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77
               +Q + +       +    G+GKT +L++ V   +         +L LT  + +AAE
Sbjct: 25  WDAEQQAVLAHRGGPLLILGGPGTGKTTLLIETVADRVSRGEVALENVLVLTGQRRSAAE 84

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+   +   S                                           +T H
Sbjct: 85  LRRRIALRLGRTSREPLA--------------------------------------RTFH 106

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++   ++    ++        +    +   +I E  +  L        E L+ A 
Sbjct: 107 SYAFGVLCADAIQRGEPP-PRLLTSAEQDVIIRELLRGDLDRGATGWPERLRPAL 160


>gi|254370666|ref|ZP_04986671.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874988|ref|ZP_05247698.1| uvrD/REP helicase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|151568909|gb|EDN34563.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840987|gb|EET19423.1| uvrD/REP helicase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 169

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 52/205 (25%)

Query: 17  ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  T  +Q + + D  + A VSA AGSGKT  L+ R+  L+     P+ +L L +   +A
Sbjct: 1   MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMY-NKSA 59

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
                        ++    ++L+ EI K+                          + V+T
Sbjct: 60  Q----------LDFATRLKKVLNPEIAKL--------------------------VNVRT 83

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +H+   + +Q F       + F  AD    K L E    + +A ++    +E     + I
Sbjct: 84  MHSLGNSFLQAFAK-----AGFVKAD----KILKEYEVDAIIAKLLKTYQKE-----FNI 129

Query: 196 LEISNDEDIETLISDIISNRTALKL 220
            +  ++E IET  + I   ++ L L
Sbjct: 130 TKDIDNERIETFKNYISLLKSDLSL 154


>gi|68473229|ref|XP_719420.1| hypothetical protein CaO19.7661 [Candida albicans SC5314]
 gi|46441236|gb|EAL00535.1| hypothetical protein CaO19.7661 [Candida albicans SC5314]
 gi|238880432|gb|EEQ44070.1| hypothetical protein CAWG_02329 [Candida albicans WO-1]
          Length = 637

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 50/176 (28%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           DP     + A  G+GKT  L++R+ +L+     P +++ L+ T      +   + E I  
Sbjct: 16  DPQTVLSIQAGPGTGKTFALIKRIQKLIADGVPPQSIVVLSLTNRTVNSLRSALSEYIGG 75

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            +                                      G + ++T H+F   ++    
Sbjct: 76  DT--------------------------------------GDVVIKTFHSFAFDLI---- 93

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE----ELKKAFYEILEISN 200
            E+N+  +F    E+  + L+++       ++ +  N      L+KA  E+ E  +
Sbjct: 94  -ESNLQEYF---PEKGRQMLLDDISFQNYRTLFMTGNSVKQLHLEKALSEVREGKD 145


>gi|83815427|ref|YP_444856.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83756821|gb|ABC44934.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM
          13855]
          Length = 855

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
           ID    T  +  +       A V A AG+GKT  LV R+ RL+      P  +L  + +
Sbjct: 1  MIDREQLTDEQTRIVQHGRGPALVFAVAGAGKTTSLVHRIARLVTQGGVAPGNILASSFS 60

Query: 72 KAAAAEM 78
          +A A ++
Sbjct: 61 RATAQDL 67


>gi|312965416|ref|ZP_07779648.1| uvrD/REP helicase family protein [Escherichia coli 2362-75]
 gi|312289836|gb|EFR17724.1| uvrD/REP helicase family protein [Escherichia coli 2362-75]
 gi|323159373|gb|EFZ45358.1| uvrD/REP helicase family protein [Escherichia coli E128010]
          Length = 621

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEII 86
           +   S  V+A AG+GKT  L Q+   LL       P  +L ++  K AA  ++ RV +  
Sbjct: 27  ETDSSILVTAGAGAGKTEFLAQKATYLLQTGICPAPKRILAISFKKDAAQNLAERVAKR- 85

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
                      +     +      K  + + R  L      PG  ++
Sbjct: 86  ------CPRDQARRFDSMTFDAFTKGLLDRFRPALPEPFNAPGTYQI 126


>gi|224114652|ref|XP_002332333.1| predicted protein [Populus trichocarpa]
 gi|222832580|gb|EEE71057.1| predicted protein [Populus trichocarpa]
          Length = 1056

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 52/170 (30%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           N  +E+ + +  ++  + E    SD +    + A  GSGK                 PS 
Sbjct: 176 NMPEEYVKYLQGLNDRQREA-ACSDISVPLMLIAGPGSGK--------------GISPSN 220

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L +T T AAAAEM  R+  +                             +KA+ L+   
Sbjct: 221 ILAMTFTTAAAAEMRDRIGAVAGK--------------------------AKAKELM--- 251

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
                   + T H+F   + +    +   TS F I      ++ I EA +
Sbjct: 252 --------ISTFHSFSLQLCRSHAEKLGRTSEFLIYGHGHQRRAIIEAVR 293


>gi|118387235|ref|XP_001026729.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89308496|gb|EAS06484.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1021

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           Y N F E  E      Q K   ++ S+  +   + A AGSGKT  LV R+  L+     P
Sbjct: 13  YKNKFGEDCELRPSEEQLK---IITSELRQDQKIIACAGSGKTTTLVARLKYLIDHGVSP 69

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            +++  T    A   +  R +E+I   S    +I
Sbjct: 70  ESIIISTFNVEAGRNIQSRAMELIGEQSAKKLDI 103


>gi|255994267|ref|ZP_05427402.1| DNA helicase [Eubacterium saphenum ATCC 49989]
 gi|255993935|gb|EEU04024.1| DNA helicase [Eubacterium saphenum ATCC 49989]
          Length = 635

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 50/175 (28%)

Query: 14  IDLISQTKS--EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +D ++  K   E L       +  +   AGSGKT+ L+  ++  L        ++C+T+T
Sbjct: 1   MDTLTLEKEVLEALQCIKNGENFILEGGAGSGKTYSLIS-LINALTEELPDIKIVCITYT 59

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AE+  R+                                                L
Sbjct: 60  NNAVAEILSRIEN--------------------------------------------ENL 75

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--EEAKKSTLASIMLDN 184
            V TIH F  A+++++  E        + +++  K L   ++  +  ++    +N
Sbjct: 76  WVSTIHEFIWALIRKYQNEIK-DILVELINDDNEKNLKKPKDFSEDLISKEYFEN 129


>gi|312976769|ref|ZP_07788518.1| putative helicase [Lactobacillus crispatus CTV-05]
 gi|310896097|gb|EFQ45162.1| putative helicase [Lactobacillus crispatus CTV-05]
          Length = 620

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 49/157 (31%), Gaps = 43/157 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
            +S    A     +  V A  G+GKT +L Q+   L        P  +L ++  + AA  
Sbjct: 15  LESNAKQAIFTNDNILVQAGPGAGKTELLAQKASYLFQTGLCPAPFNILAISFKRDAAEN 74

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  RV + +        E  S  I+K                               T  
Sbjct: 75  IKDRVSKRVGK------EEGSRFISK-------------------------------TFD 97

Query: 138 AFCEAIMQQFPLEANIT----SHFAIADEEQSKKLIE 170
           AF + I+ +F L           + I+      K+ E
Sbjct: 98  AFAKLIVDRFYLVLPKDLRPRPQYEISSNSTQTKIYE 134


>gi|38347912|ref|NP_941161.1| putative DNA helicase [Serratia marcescens]
 gi|190410259|ref|YP_001965760.1| putative DNA helicase [Klebsiella pneumoniae]
 gi|226807648|ref|YP_002791342.1| hypothetical protein pEC-IMP_081 [Enterobacter cloacae]
 gi|226809958|ref|YP_002791652.1| hypothetical protein pEC-IMPQ_080 [Enterobacter cloacae]
 gi|38259389|emb|CAE51614.1| putative DNA helicase [Serratia marcescens]
 gi|146151052|gb|ABQ02818.1| putative DNA helicase [Klebsiella pneumoniae]
 gi|226425873|gb|ACO53966.1| hypothetical protein [Enterobacter cloacae]
 gi|226426184|gb|ACO54276.1| hypothetical protein [Enterobacter cloacae]
          Length = 679

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          T  ++ + S  T  A V A  GSGKT  LV+RV RL+     P ++L L + K+A
Sbjct: 6  TWEQKSIVSHDTGHALVKAVPGSGKTTTLVKRVERLVKTGTDPRSILILMYNKSA 60


>gi|118399025|ref|XP_001031839.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89286173|gb|EAR84176.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1961

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 17  ISQTKSE-QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           I  T+ +  ++ SD  +   + A AGSGKT  LV R+  LL     P+ ++  T    A 
Sbjct: 692 IRPTEEQLDVIVSDIKKDTKIIACAGSGKTTTLVIRLKYLLDHGVKPNQIIISTFNIEAG 751

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
             +S +V E+I     +   IL   I KI  K       +K ++    +L
Sbjct: 752 KHISQKVYEMIGK--EVQQSILIGNIDKIAYKFIRSELEAKQKNSQSVLL 799


>gi|18466509|ref|NP_569317.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|160431731|ref|YP_001551845.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Choleraesuis]
 gi|260752044|ref|YP_003237559.1| putative DNA helicase [Escherichia coli O111:H- str. 11128]
 gi|16505825|emb|CAD09703.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|159885272|dbj|BAF92876.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Choleraesuis]
 gi|257767514|dbj|BAI39008.1| putative DNA helicase [Escherichia coli O111:H- str. 11128]
          Length = 679

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          T  ++ + +  T  A V A  GSGKT  LV+RV RL+     P ++L L + K+A
Sbjct: 6  TWEQKSIVNHDTGHALVKAVPGSGKTTTLVKRVERLVKTGTDPRSILILMYNKSA 60


>gi|150025612|ref|YP_001296438.1| hypothetical protein FP1561 [Flavobacterium psychrophilum
          JIP02/86]
 gi|149772153|emb|CAL43629.1| Protein of unknown function [Flavobacterium psychrophilum
          JIP02/86]
          Length = 633

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          +  +S  AGSGKT+ LVQ V++ ++ +   S + C+T+T AA  E+  RV
Sbjct: 26 NFLLSGGAGSGKTYSLVQ-VIKQVIEDNPTSKVACMTYTNAAVKEIEERV 74


>gi|148653018|ref|YP_001280111.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
 gi|148572102|gb|ABQ94161.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychrobacter
           sp. PRwf-1]
          Length = 1496

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 28/206 (13%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT  L   VLRLL+     P  ++  T T+AAAAEM  R+ + +  +  L 
Sbjct: 56  LIEASAGTGKTWTLTGIVLRLLIEARRAPEQIIATTFTRAAAAEMRQRIHDRLVDFYQL- 114

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEAN 152
                     +Q      +D++   HL   IL+ TP   + Q          +Q   +A+
Sbjct: 115 ----------LQWVNNLSADLANKEHLYPDILQVTPEDSRDQ----------RQADKQAD 154

Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
             ++ ++AD+E ++ L  + ++                    ++E + +  ++ ++ D I
Sbjct: 155 KAANASLADDELNQDLAHDKQREAAHKATAKKIRA-----KWLVEQAKNARLDDIMQDPI 209

Query: 213 SNRTALKLIFFFFSYLWRRKIIEKSL 238
           +      L+    SY     I   +L
Sbjct: 210 NLHLVGYLLDHIHSYPMTDAIRRTAL 235



 Score = 35.2 bits (80), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 3/124 (2%)

Query: 72  KAAAAEMSHRVLEIITAWSHLSD---EILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           KA A ++  + L      + L D   + ++  +        +   M+ A      +L T 
Sbjct: 181 KATAKKIRAKWLVEQAKNARLDDIMQDPINLHLVGYLLDHIHSYPMTDAIRRTALVLTTL 240

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
             L V T+ +  +  + ++  E       AI ++ Q +++ +      L         E 
Sbjct: 241 DKLFVGTLDSLAQKWLAEYSSETGHQQGMAIIEDSQIEQVTDSIIHDELRQFQSRLYYEQ 300

Query: 189 KKAF 192
            K +
Sbjct: 301 PKLY 304


>gi|125972730|ref|YP_001036640.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
 gi|256004889|ref|ZP_05429863.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|125712955|gb|ABN51447.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
 gi|255991199|gb|EEU01307.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|316941036|gb|ADU75070.1| UvrD/REP helicase [Clostridium thermocellum DSM 1313]
          Length = 743

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 35/147 (23%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITA 88
                 ++A  G GKTH L    + ++    H P  +L +T+  +A      R+      
Sbjct: 15  RGGKCAIAAIPGGGKTHCLSLWAVEMITHGYHKPGKILIVTYMNSAVNNFKQRI------ 68

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                       +  L    +       V TIH  C  I+++ P
Sbjct: 69  ----------------------------SAELQKRGINGSKDYFVSTIHGLCLQIIKEKP 100

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175
                   F + DE     LI  A   
Sbjct: 101 DLIIANEEFEVIDEVSKIHLISSAIDE 127


>gi|328555696|gb|AEB26188.1| DNA helicase II [Bacillus amyloliquefaciens TA208]
          Length = 82

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 51/118 (43%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA--HP-STLLCLTHTKAAAAEMSHRVLEIITAWS 90
             ++A AGSGKT     ++  +++ +   HP   +LC+T+TK AA E+            
Sbjct: 10  FLINAPAGSGKTT----KIKSMIVNHKIKHPLDNILCITYTKRAAEELK----------K 55

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            L +E                                  G+ + TIH+F    ++ + 
Sbjct: 56  GLDEE----------------------------------GIHISTIHSFLHKFLRIYF 79


>gi|153854122|ref|ZP_01995430.1| hypothetical protein DORLON_01421 [Dorea longicatena DSM 13814]
 gi|149753171|gb|EDM63102.1| hypothetical protein DORLON_01421 [Dorea longicatena DSM 13814]
          Length = 682

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           + V T H+ C  I+++        ++F I D +  K L+ E  K
Sbjct: 16  IWVSTFHSMCVRILRRHIDLLGYDTNFTIYDSDDQKTLMREVCK 59


>gi|229523603|ref|ZP_04413008.1| ATP-dependent DNA helicase PcrA [Vibrio cholerae bv. albensis
          VL426]
 gi|229337184|gb|EEO02201.1| ATP-dependent DNA helicase PcrA [Vibrio cholerae bv. albensis
          VL426]
          Length = 620

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 29 DPTRSAWVSANAGSGKTHILVQ--------RVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
          D  RS  + A AGSGKT  LV          + RL+ +      +  +T+T AA  E+ H
Sbjct: 23 DNPRSFLLFAGAGSGKTRSLVNVLQEIREKNLARLIQSG---QRIGVITYTNAACDEIQH 79

Query: 81 RV 82
          R+
Sbjct: 80 RL 81


>gi|325846284|ref|ZP_08169301.1| hypothetical protein HMPREF9246_0010 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481633|gb|EGC84671.1| hypothetical protein HMPREF9246_0010 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 634

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 47/140 (33%)

Query: 14  IDLISQTKS--EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +D ++  K   E L       +  +   AGSGKT+ L+  ++  L        ++C+T+T
Sbjct: 1   MDTLTLEKEVLEALQCIKNGENFILEGGAGSGKTYSLIS-LINALTEELPDIKIVCITYT 59

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AE+  R+                                                +
Sbjct: 60  NNAVAEILSRIEN--------------------------------------------ENI 75

Query: 132 KVQTIHAFCEAIMQQFPLEA 151
            V TIH F  ++++++  E 
Sbjct: 76  WVSTIHEFIWSLIRKYQNEI 95


>gi|91784004|ref|YP_559210.1| hypothetical protein Bxe_A1801 [Burkholderia xenovorans LB400]
 gi|91687958|gb|ABE31158.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 625

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 48/127 (37%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLE 84
           P RS  + A AGSGKT  LV+ +  L              + C+T+T+ A  E       
Sbjct: 24  PPRSFVMVAGAGSGKTTSLVKAIAHLAETRGPALRRAGQQIACITYTEVAVGE------- 76

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                           I    G  P                       + TIH+F  +I+
Sbjct: 77  ----------------IVADVGVSPL--------------------FHISTIHSFLWSII 100

Query: 145 QQFPLEA 151
           + F ++ 
Sbjct: 101 RPFHIDI 107


>gi|256752859|ref|ZP_05493698.1| Superfamily I DNA and RNA helicase-like protein
          [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748261|gb|EEU61326.1| Superfamily I DNA and RNA helicase-like protein
          [Thermoanaerobacter ethanolicus CCSD1]
          Length = 67

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          +    ++           + A AGSGKT +L  R+  L+    +P     LT+
Sbjct: 7  NLNDKQREAVMTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKYP----LLTY 55


>gi|187930241|ref|YP_001900728.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|187727131|gb|ACD28296.1| UvrD/REP helicase [Ralstonia pickettii 12J]
          Length = 557

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 64/212 (30%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTK 72
           D ++   +  L A +  RS  ++A  G+GKT +L QR   LL      +P  +L ++   
Sbjct: 11  DGLTLEPNALLAAKEQVRSLALTAGPGAGKTEMLAQRADFLLRTGTCCYPKRILAISFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A++ +  RV     +                                     E      
Sbjct: 71  DASSNLKERVKRRCGS-------------------------------------EMAARFD 93

Query: 133 VQTIHAFCEAIMQQF-PLEAN---ITSHFAIAD--------EEQSKKLI----------- 169
             T HAF + I+ +F P+      +   + I +        E +   L+           
Sbjct: 94  SYTFHAFAKRIIDRFRPVLTGQDALDVGYKIVERKVKPSRQEIEFADLVPLAIKILRKSA 153

Query: 170 --EEAKKSTLASIMLDNNEELKKAFYEILEIS 199
               A + T + + LD  ++     YE+L+++
Sbjct: 154 MARNAVRQTYSDVFLDEFQDCTNLQYELLKLA 185


>gi|309804017|ref|ZP_07698099.1| conserved domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163936|gb|EFO66201.1| conserved domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 46

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR 54
          + S TK ++    D      VSA+AGSGKT +LV+RV++
Sbjct: 1  MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIK 39


>gi|27764620|ref|NP_776242.1| Yga2F [Corynebacterium glutamicum]
 gi|27657791|gb|AAO18219.1| Yga2F [Corynebacterium glutamicum]
          Length = 552

 Score = 58.4 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 43/151 (28%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
           D +    +    A+   ++  V+A  G+GKT +L QR   LL      +P  +L ++   
Sbjct: 11  DGLVLEPNALAAATMEEQNVVVAAGPGAGKTELLAQRADFLLHTGNCPYPRRILAISFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            AA  +  RV +   +                                     +    L 
Sbjct: 71  DAARNLRDRVRQRSGS-------------------------------------QLAARLD 93

Query: 133 VQTIHAFCEAIMQQF-PLEAN---ITSHFAI 159
             T HAF + I+  + P       +   + +
Sbjct: 94  SFTFHAFAKRIIDNYRPALTGQDTLIPDYRL 124


>gi|295701461|ref|YP_003610462.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295441784|gb|ADG20951.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 568

 Score = 58.4 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAA 74
          ++     +Q   ++  R     A  G+GKT  +  +   LL     P  ++  +T +K A
Sbjct: 1  MLDGLNPQQREVAEHRRHCVAIACPGAGKTKTIAAKAALLLTQ---PGAIVGAVTFSKDA 57

Query: 75 AAEMSHRVLEIITAWSH 91
          A E+  R+L +  A + 
Sbjct: 58 AVELRDRILALSGAQAK 74


>gi|257066186|ref|YP_003152442.1| superfamily I DNA and RNA helicase-like protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798066|gb|ACV28721.1| superfamily I DNA and RNA helicase-like protein [Anaerococcus
           prevotii DSM 20548]
          Length = 634

 Score = 58.4 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 47/140 (33%)

Query: 14  IDLISQTKS--EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +D ++  K   E L       +  +   AGSGKT+ L+  ++  L        ++C+T+T
Sbjct: 1   MDTLTLEKEVLEALECIKNGENFILEGGAGSGKTYSLIS-LINALTEELPDIKIVCITYT 59

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AE+  R+                                                +
Sbjct: 60  NNAVAEILSRIEN--------------------------------------------ENI 75

Query: 132 KVQTIHAFCEAIMQQFPLEA 151
            V TIH F  ++++++  E 
Sbjct: 76  WVSTIHEFIWSLIRKYQNEI 95


>gi|163744556|ref|ZP_02151916.1| UvrD/REP helicase family protein [Oceanibulbus indolifex HEL-45]
 gi|161381374|gb|EDQ05783.1| UvrD/REP helicase family protein [Oceanibulbus indolifex HEL-45]
          Length = 634

 Score = 58.4 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKA 73
           +   ++  L     T +  V A  G+GKT +L QR   LL       P  +L ++  + 
Sbjct: 17 GVDALEANALKVVRSTDNRSVIAGPGAGKTELLAQRAAYLLQTGTAPAPRRILAISFKRD 76

Query: 74 AAAEMSHRVLEI 85
          AA  ++ RV + 
Sbjct: 77 AATNLAARVRQR 88


>gi|328914083|gb|AEB65679.1| DNA helicase II [Bacillus amyloliquefaciens LL3]
          Length = 279

 Score = 58.4 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 51/118 (43%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA--HP-STLLCLTHTKAAAAEMSHRVLEIITAWS 90
             ++A AGSGKT     ++  +++ +   HP   +LC+T+TK AA E+            
Sbjct: 10  FLINAPAGSGKTT----KIKSMIVNHKIKHPLDNILCITYTKRAAEELK----------K 55

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            L +E                                  G+ + TIH+F    ++ + 
Sbjct: 56  GLDEE----------------------------------GIHISTIHSFLHKFLRIYF 79


>gi|56479201|ref|YP_160790.1| DNA helicase [Aromatoleum aromaticum EbN1]
 gi|56315244|emb|CAI09889.1| predicted DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 579

 Score = 58.4 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 38/150 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHR 81
           ++    D      V+   GSGKT I + +  RL+     P   +L L+ ++AA A    R
Sbjct: 8   QRQSVLDAIGPVLVTGGPGSGKTTIALAKAQRLIAVGLPPGQTVLFLSFSRAAVA----R 63

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V+E                         +K+ + KA         +   L +QT H+F  
Sbjct: 64  VVEA------------------------SKAQLPKA---------SQSKLSIQTFHSFFW 90

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            I++ +           +        +  +
Sbjct: 91  EILKAYGYLLGAPRRLRLLLPHDETAMRHQ 120


>gi|118366255|ref|XP_001016346.1| hypothetical protein TTHERM_00128650 [Tetrahymena thermophila]
 gi|89298113|gb|EAR96101.1| hypothetical protein TTHERM_00128650 [Tetrahymena thermophila
          SB210]
          Length = 904

 Score = 58.4 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 5  NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
          NS QE+    D     + ++++ S       + A AGSGKT  L+ R+  L+        
Sbjct: 9  NSCQENIALTD-----EQKKIINSSIDEDQRILACAGSGKTTTLIYRIKYLIEQGICAKQ 63

Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSH 91
          +L  T    AA  +  +  +++   + 
Sbjct: 64 ILLSTFNVEAANNLKIKAKQVLQQDAE 90


>gi|78049998|ref|YP_366173.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78038428|emb|CAJ26173.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
          Length = 1350

 Score = 58.4 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           + A+AG+GKT  L     RL++        +L +T T+AA 
Sbjct: 20 LIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAAT 61



 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN--------ITSHFAIADEEQSKKLI 169
           R  L   +E      V TIH FC  ++++  LE+         + +   +  E  +    
Sbjct: 157 RRRLQQAVEEIDLAAVFTIHGFCARVLREHALESGQAFAAPELLANDRQLLGEVAADLWR 216

Query: 170 EEAKKSTLAS----IMLDNNEELKKAFYEILEI 198
           + A  + +A     +     E L      ++  
Sbjct: 217 QRAADAVMAEDLIALWSGGPEALASDLRALVRH 249


>gi|302188070|ref|ZP_07264743.1| pathogenesis-related protein [Pseudomonas syringae pv. syringae
           642]
          Length = 615

 Score = 58.4 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 54/133 (40%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVL--------RLLLANAHPSTLLCLTHTKAA 74
           +Q L  D   S ++ A AGSGKT+ LV+ V         RL +       +  +T+T AA
Sbjct: 12  KQCLNLDNPTSFFLYAGAGSGKTYSLVEAVRNFKARFSERLAVEG---RQIAVITYTNAA 68

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R                                           LE    + V 
Sbjct: 69  AEEVMRR-------------------------------------------LEHDPLVWVS 85

Query: 135 TIHAFCEAIMQQF 147
           TIH+F   +++ F
Sbjct: 86  TIHSFAWEMIKGF 98


>gi|259156483|gb|ACV96427.1| UvrD/REP helicase [Vibrio cholerae Mex1]
          Length = 558

 Score = 58.4 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 62/210 (29%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTK 72
           D ++   +    A +  R   ++A  G+GKT +L QR   LL      +P  +L ++   
Sbjct: 11  DGLTLEPNALRAAKEQARCLALTAGPGAGKTEMLAQRADFLLRTGTCRYPKRILAISFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+  +  R+                                           E      
Sbjct: 71  DASKNLKERIQRRCGQ-------------------------------------ELASRFD 93

Query: 133 VQTIHAFCEAIMQQFPLEA----NITSHFAIADEEQSKKLI------------------- 169
             T HAF + I+ +F +       +   ++I + + +++ I                   
Sbjct: 94  SYTFHAFAKRIIDRFRVVLTGNDALDLDYSIGERKVTRRQITFHDLVPLAIQILKASTVA 153

Query: 170 EEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             A + T + + LD  ++     YE+++++
Sbjct: 154 RNAIRQTYSDVFLDEFQDCTDQQYELVKVA 183


>gi|90569545|gb|ABD94616.1| UvrD/REP family helicase [Pseudomonas aeruginosa]
          Length = 760

 Score = 58.4 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           TK +  +       A V+A AGSGKT  L+ RV R LL +  P+ +  +   + AA    
Sbjct: 7   TKEQLQVIEHAGAHAIVAAVAGSGKTETLIGRV-RHLLRDISPAHIAVVMFNRDAALSFR 65

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            R  + +   +       ++   KI  +      + +AR
Sbjct: 66  RRFEQAVQGTAP-EIRTFNSMGNKIVNRLVQNGLLPEAR 103


>gi|190345165|gb|EDK37003.2| hypothetical protein PGUG_01101 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 756

 Score = 58.4 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 38/122 (31%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+D      V+A  GSGKT  LV+R+  L  +   P  +L L+        M++R +  I
Sbjct: 36  AADENSILVVNAGPGSGKTSTLVRRIANL-ASQFDPKEILVLS--------MANRSVNSI 86

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                   + L       +   P+                      V T H+FC  ++ +
Sbjct: 87  R-------QSLQDLFKDDKNSYPD----------------------VFTFHSFCSLLLDE 117

Query: 147 FP 148
             
Sbjct: 118 NS 119


>gi|317495590|ref|ZP_07953958.1| hypothetical protein HMPREF0432_00560 [Gemella moribillum M424]
 gi|316914404|gb|EFV35882.1| hypothetical protein HMPREF0432_00560 [Gemella moribillum M424]
          Length = 635

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 47/140 (33%)

Query: 14  IDLISQTKS--EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +D ++  K   E L       +  +   AGSGKT+ L+  ++  L        ++C+T+T
Sbjct: 1   MDTLTLEKEVLEALQCIKNGENFILEGGAGSGKTYSLIS-LINALTEELPDIKIVCITYT 59

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A AE+  R+                                                +
Sbjct: 60  NNAVAEILSRIEN--------------------------------------------ENI 75

Query: 132 KVQTIHAFCEAIMQQFPLEA 151
            V TIH F   +++++  E 
Sbjct: 76  WVSTIHEFIWDLIRKYQNEI 95


>gi|227510075|ref|ZP_03940124.1| possible ATP-dependent DNA helicase PcrA [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190454|gb|EEI70521.1| possible ATP-dependent DNA helicase PcrA [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 786

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 34/131 (25%)

Query: 22  SEQLLASDP--TRSAWVSANAGSGKT--HILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +EQL        +   ++A AGSGKT   +L   V  ++     P  +L +T +K A  +
Sbjct: 27  TEQLAILRQPYQQPTLINACAGSGKTTIFMLSALVA-IMTGKISPENVLGITFSKKAQTD 85

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R  + +     +  ++ +  +                                 T H
Sbjct: 86  MENRYRQYLMQLKAVGIDLAAEGMPYF-----------------------------STFH 116

Query: 138 AFCEAIMQQFP 148
           A    +++  P
Sbjct: 117 ALFYRLLRTTP 127


>gi|257486746|ref|ZP_05640787.1| UvrD/REP helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010216|gb|EGH90272.1| UvrD/REP helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 555

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 44/203 (21%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTK 72
           + I    + ++ A +  R   ++A  GSGK+ +L QR   LL      +P  +L +    
Sbjct: 11  NGIVLEPNAEIAAKEQQRCVALTAGPGSGKSELLAQRADFLLTTGVCRYPKRILAIAFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+  +  RV     A                                        G   
Sbjct: 71  DASNNLKERVRRRCGATY-------------------------------------AGRFD 93

Query: 133 VQTIHAFCEAIMQQF-PLEAN---ITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEE 187
             T H   + I+++F P+ A    + S F +  + ++  +  E K+   LA  +LD    
Sbjct: 94  SYTFHGLAKRIIERFRPVLAGDDALNSGFKVVVKGKAHPVQTEFKELIPLAIKILDAYPA 153

Query: 188 LKKAFYEILEISNDEDIETLISD 210
              A  +       ++ +    +
Sbjct: 154 AINAVRQTYSDVFLDEFQDCTDE 176


>gi|118380928|ref|XP_001023626.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89305393|gb|EAS03381.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1203

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 19 QTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          +   EQ     SD  ++  + A AGSGKT  L+ RV  L+     P  ++  T    AA 
Sbjct: 11 ELSEEQKKIVYSDINQNQKIEACAGSGKTTTLIYRVKYLINNKIKPQKIILTTFNIEAAK 70

Query: 77 EMSHRVLEIITA 88
           ++ +  +++  
Sbjct: 71 NLNKKAKQVLET 82


>gi|302387816|ref|YP_003823638.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
 gi|302198444|gb|ADL06015.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
          Length = 619

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
            +     +    ++  V A  G+GKT +L Q+   L   N   +P  +L ++    AAA 
Sbjct: 18  LEENATTSVKAEKNVLVVAGPGAGKTELLAQKTGYLFQTNICTYPKKILAISFKTDAAAN 77

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ--- 134
           +  R+         +    L+ +          K  + + R+ L   L       +    
Sbjct: 78  LKERIESRYGKEYAIRFSSLTYDAF-------AKKILDQFRNALPEELCPSKDYIIGDKK 130

Query: 135 TIHA 138
           TI A
Sbjct: 131 TIDA 134


>gi|327480564|gb|AEA83874.1| helicase [Pseudomonas stutzeri DSM 4166]
          Length = 665

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 69/200 (34%), Gaps = 60/200 (30%)

Query: 20  TKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
             SE+  A    RS    + A AGSGK+  L+ RV+ +L      P  L  ++ T A+  
Sbjct: 125 APSEEQWAMILGRSPLTRIFAGAGSGKSTTLLLRVVFMLCHLGIEPGRLTVISFTNASCG 184

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++  ++L ++  W    DE  + +                                V+T 
Sbjct: 185 QLREQLLRVLAFWQFPFDERQARQC-------------------------------VRTF 213

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEE------------------QSKKLIEEAKKSTLA 178
           H+    + ++          F   D++                    ++L+++A +   A
Sbjct: 214 HSAMAQLARE---VLGTAQWFEQLDDKAAAGDEPDNPLANARLRPAQQRLLKQAYQRCYA 270

Query: 179 SIMLDNNEELKKAFYEILEI 198
                   + ++  + +L++
Sbjct: 271 E-----QPDFREQVHRLLDL 285


>gi|50304809|ref|XP_452360.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641493|emb|CAH01211.1| KLLA0C03674p [Kluyveromyces lactis]
          Length = 708

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 77/217 (35%), Gaps = 45/217 (20%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A  GSGKT+ L+ +V  L+      P  ++ L+ T  A   ++     ++  
Sbjct: 19  PASTLKVIAGPGSGKTYTLLCKVRELIQTGQVKPREIIILSLTNKAVDNITD---NLLGV 75

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
           +  LSD+  +                         + +    + + TIH     I+ +  
Sbjct: 76  FQELSDKPYTD----------------------HEVDDIVSQIGIYTIHGLSNRIVTEN- 112

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTL--ASIMLDNNEELKKAFYEILEISN------ 200
               I     I +E   + L++   K      ++   N+  + K   +++          
Sbjct: 113 --MGIV---NIIEENGWRGLVKLIPKDFWNKRNVNTANDRIITKKLQKLINEYQIDTDNI 167

Query: 201 DEDIETLI-----SDIISNRTALKLIFFFFSYLWRRK 232
           DE IE +      S++++N   +K+   F       +
Sbjct: 168 DETIEKVTKLMKHSNVLTNDDLIKMAVEFLKEPNSEE 204


>gi|328912270|gb|AEB63866.1| UvrD/REP helicase [Bacillus amyloliquefaciens LL3]
          Length = 598

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +   K +    +    +  V A AGSGK+ +L+ RV  L+         +L ++ T+  A
Sbjct: 3  LKFNKQQLEAINFYKGACAVIAGAGSGKSTVLLNRVKTLVRDYGEDQEDILAISFTRNTA 62

Query: 76 AE 77
           E
Sbjct: 63 NE 64


>gi|332187513|ref|ZP_08389250.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
 gi|332012442|gb|EGI54510.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
          Length = 607

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 40/206 (19%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           ++ ++ E L A  P     V    GSGKT + + +  ++      P   +L L+  +A  
Sbjct: 4   LTPSQKEVLAADGPQ---LVVGGPGSGKTTVSILKAAKIAREKLRPGQRILFLSFARATV 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +    RV E I     ++ E                                   ++V T
Sbjct: 61  S----RVFEAIDEERSVTKEEKK-------------------------------RIEVDT 85

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            H+F   I++             I         +   +    A   L + E+ +KA  E+
Sbjct: 86  YHSFFWRILKAHGYLVGFPRRMTILTPPNEAIALSSIRSGFKAPSKLSDEEKAQKAALEV 145

Query: 196 LEISNDEDIETLIS-DIISNRTALKL 220
            E       E  +  D+ + R A+ L
Sbjct: 146 AERMRLATEEGKVCFDLFAERVAILL 171


>gi|328552941|gb|AEB23433.1| ATP-dependent DNA helicase, uvrD-like protein [Bacillus
          amyloliquefaciens TA208]
          Length = 598

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
          +   K +    +    +  V A AGSGK+ +L+ RV  L+         +L ++ T+  A
Sbjct: 3  LKFNKQQLEAINFYKGACAVIAGAGSGKSTVLLNRVKTLVRDYGEDQEDILAISFTRNTA 62

Query: 76 AE 77
           E
Sbjct: 63 NE 64


>gi|146423595|ref|XP_001487724.1| hypothetical protein PGUG_01101 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 756

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 38/122 (31%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           A+D      V+A  GSGKT  LV+R+  L  +   P  +L L+        M++R +  I
Sbjct: 36  AADENSILVVNAGPGSGKTSTLVRRIANL-ASQFDPKEILVLS--------MANRSVNSI 86

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                   + L       +   P+                      V T H+FC  ++ +
Sbjct: 87  R-------QSLQDLFKDDKNSYPD----------------------VFTFHSFCSLLLDE 117

Query: 147 FP 148
             
Sbjct: 118 NS 119


>gi|331694961|ref|YP_004331200.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949650|gb|AEA23347.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 1106

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 52/171 (30%), Gaps = 32/171 (18%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           + + +  +    +    +    V    G+GKT +L+  +   +     P  +L L  ++ 
Sbjct: 12  VGVPAWDERAWRVLGHRSGPLRVVGGPGTGKTTVLLAALAERVREGVAPENVLLLVGSRR 71

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAA+M  R+  ++       +      +                               V
Sbjct: 72  AAADMRERLTPLLHPHGGDPESTTRELL-------------------------------V 100

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +T+H++   +++             +    +   ++ E     +     D+
Sbjct: 101 RTVHSYAFGVLRLHAARHG-DPPPRLLAGAEQDVVVRELLAGEIEGDAPDS 150


>gi|171911303|ref|ZP_02926773.1| hypothetical protein VspiD_09015 [Verrucomicrobium spinosum DSM
           4136]
          Length = 558

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP------STLLCLT 69
           +I++  ++ L      RS  + A AGSGKT  L+ R L  L              + C+T
Sbjct: 1   MITEADAKILECIKERRSFLIDAGAGSGKTSSLI-RALDHLRGPDRIKFLTCNQQIACIT 59

Query: 70  HTKAAAAEMSHR-----------VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            T  A  E+  R           + + + A      + L   +       P +S   +  
Sbjct: 60  FTNVAKNEIIERTEHDPLFVVTTIHDFLWAAISPFQKELKLALQSFNASLPGRSRRKQDE 119

Query: 119 HLLITILETPGGLK 132
             L   L+    ++
Sbjct: 120 TELEKALKGGAEIR 133


>gi|255601689|ref|XP_002537726.1| conserved hypothetical protein [Ricinus communis]
 gi|223515294|gb|EEF24656.1| conserved hypothetical protein [Ricinus communis]
          Length = 215

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 5/120 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            +  T  +  +     +   V ANAG+ KT  LV R+   L     P  +L LT T  A 
Sbjct: 14  GLIPTAEQTAIQLAQNKVVLVDANAGAAKTTTLVLRIGEALARKLAPEQILALTFTPEAR 73

Query: 76  AEMSHRVLEI-----ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
             +  R+LE+     +     +      +          +      AR L    L     
Sbjct: 74  EVLRRRLLEVGVPQALAERVAVLTFEDFSAWMMDLADNDDVRQCRDARALKDHALRAMDR 133


>gi|88607848|ref|YP_504873.1| ATP-dependent DNA helicase UvrD [Anaplasma phagocytophilum HZ]
 gi|88598911|gb|ABD44381.1| ATP-dependent DNA helicase, UvrD/Rep family [Anaplasma
           phagocytophilum HZ]
          Length = 788

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
           L +  L   + +   +  +   +++AR+L   I   P  LKVQT+H FC++++  FP EA
Sbjct: 3   LPENELIDVLRETCYQNADDILINRARNLFFRI---PNILKVQTVHGFCKSLISSFPSEA 59

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
            I+++F + +       + E+       ++ +++  + +   E+     +  +  L+  I
Sbjct: 60  GISANFEVRE-------LSESYPKIFYKLLHESDY-IAEHLKEVACELKESTLFDLLYKI 111

Query: 212 ISN 214
           +  
Sbjct: 112 MKK 114


>gi|171316687|ref|ZP_02905900.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
 gi|171098138|gb|EDT42949.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
          Length = 568

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 80/214 (37%), Gaps = 21/214 (9%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAA 74
           ++ Q   +Q   +   R     A  G+GKT +   +   LL     P+ ++  +T +K A
Sbjct: 1   MLDQLNPQQREVALLRRHCLAIACPGAGKTKMSATKAAFLL---QDPAAVVGAVTFSKDA 57

Query: 75  AAEMSHRVLEIITAWSHLS------DEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           A E+  R+L +    +           +   ++ +    +P+ +       +L  +L   
Sbjct: 58  AVELRERILALAPQDAKRRLIAGTFHSLAYKQLQRPGRGRPDIASEGDRLGMLGRVLAEL 117

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
           G             + +  P+   I ++F  ADE  ++  +  A +  L      + +++
Sbjct: 118 GYDW---------KVEEAVPIIERIKTNFGRADEGSAEAALYAAYQDALERNGKIDFQDM 168

Query: 189 KKAFYEILEISNDE--DIETLISDIISNRTALKL 220
            +   E ++  + +      L+ D   +   L+ 
Sbjct: 169 LRLSVERMQHGDIKPYRFTDLLVDEFQDTDPLQF 202


>gi|167968316|ref|ZP_02550593.1| hypothetical ATP-dependent DNA helicase [Mycobacterium
          tuberculosis H37Ra]
          Length = 66

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
          E +  + L   T  +  + + P     V A AG+GKT  +  RV+ L+   
Sbjct: 14 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANG 64


>gi|308175724|ref|YP_003922429.1| DNA helicase II [Bacillus amyloliquefaciens DSM 7]
 gi|307608588|emb|CBI44959.1| DNA helicase II [Bacillus amyloliquefaciens DSM 7]
          Length = 517

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 51/118 (43%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA--HP-STLLCLTHTKAAAAEMSHRVLEIITAWS 90
             ++A AGSGKT     ++  +++ +   HP   +LC+T+TK AA E+            
Sbjct: 10  FLINAPAGSGKTT----KIKSMIVNHKIKHPLDNILCITYTKRAAEELK----------K 55

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            L +E                                  G+ + TIH+F    ++ + 
Sbjct: 56  GLDEE----------------------------------GIHISTIHSFLHKFLRIYF 79


>gi|169630597|ref|YP_001704246.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169242564|emb|CAM63592.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus]
          Length = 1058

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          D T    V   +G+GKT +LV  V     A  +P+++L LT +  A+AE+ +R+   +  
Sbjct: 22 DRTGRFVVVGGSGTGKTSLLVDIVAAHTAAGVNPASVLVLTGSNRASAELRNRISAAVFE 81


>gi|254578480|ref|XP_002495226.1| ZYRO0B06292p [Zygosaccharomyces rouxii]
 gi|238938116|emb|CAR26293.1| ZYRO0B06292p [Zygosaccharomyces rouxii]
          Length = 712

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 28/132 (21%)

Query: 17  ISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72
           +  T S++ +      P  +  V A  GSGKT  L+ +V  L+      P  +L L+ T 
Sbjct: 1   MELTTSQRKVIEFPYKPASTLKVVAGPGSGKTVTLLYKVRHLVETEQVRPDEILILSLTN 60

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A   +   + +++  +     E    +                       + E  G + 
Sbjct: 61  KAVDNV---IDKLLGVFEESYGENQLTD---------------------YELREIVGQIH 96

Query: 133 VQTIHAFCEAIM 144
           V TIH     I+
Sbjct: 97  VNTIHGLANRII 108


>gi|320324203|gb|EFW80283.1| helicase, putative [Pseudomonas syringae pv. glycinea str. B076]
 gi|320328635|gb|EFW84636.1| helicase, putative [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330882359|gb|EGH16508.1| helicase, putative [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 560

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 43/144 (29%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVL 83
              D   S  + A  G+GKT IL QR   LL   +  +P  +L ++    A+  +  RV 
Sbjct: 22  AIKDTDHSLVLLAGPGAGKTEILAQRADFLLRTGSCRYPKRILAISFKSDASRNLKERVS 81

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                                                L    E        T H+F   I
Sbjct: 82  -------------------------------------LRCGWEQATRFDSFTFHSFANRI 104

Query: 144 MQQFPLEA----NITSHFAIADEE 163
           + +F +       +   ++I  E 
Sbjct: 105 VSRFRVLLTDPDALKPDYSIGKEA 128


>gi|163731816|ref|ZP_02139263.1| pathogenesis-related protein [Roseobacter litoralis Och 149]
 gi|161395270|gb|EDQ19592.1| pathogenesis-related protein [Roseobacter litoralis Och 149]
          Length = 646

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 50/149 (33%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
            +S  + A AGSGKT  L   +  L LA           +  +T T  AA E+  RV   
Sbjct: 32  GKSFIIFAGAGSGKTFSLENALEHLKLAYQEVFSRLSQQVAVVTFTNNAADEIRDRV--- 88

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                                                   E      + TIH+FC   + 
Sbjct: 89  ----------------------------------------ERNPIFSISTIHSFCWHAID 108

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKK 174
            F   A+I   F      + +KL E+ ++
Sbjct: 109 GF--NADIRQWFLSEIPNELEKLKEQERR 135


>gi|330899087|gb|EGH30506.1| pathogenesis-related protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 631

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 18/114 (15%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVL--------RLLLANAHPSTLLCLTHTKAAAAEMSH 80
           D   S ++ A AGSGKT+ LV+ V         RL+        +  +T+T AA  E+  
Sbjct: 34  DRPTSFFLYAGAGSGKTYSLVEAVRSFKERERERLIFEG---RQIAIITYTNAACDEILR 90

Query: 81  R-------VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           R       ++  I A++    +  + +I +    K  +   +  R L+ +  E 
Sbjct: 91  RLEHDPLVIVSTIHAFAWRMIQGFNDDIREWLRVKLGEDIAALQRQLVRSKGEN 144


>gi|227513004|ref|ZP_03943053.1| possible ATP-dependent DNA helicase PcrA [Lactobacillus buchneri
           ATCC 11577]
 gi|227083761|gb|EEI19073.1| possible ATP-dependent DNA helicase PcrA [Lactobacillus buchneri
           ATCC 11577]
          Length = 786

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 34/129 (26%)

Query: 22  SEQLLASDP--TRSAWVSANAGSGKT--HILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +EQL        +   ++A AGSGKT   +L   V  ++     P  +L +T +K A  +
Sbjct: 27  TEQLAILRQPYQQPTLINACAGSGKTTIFMLSALVA-IMTGKISPENVLGITFSKKAQTD 85

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R  + +     +  ++ +  +                                 T H
Sbjct: 86  MENRYQQYLMQLKAVGIDLAAEGMPYF-----------------------------STFH 116

Query: 138 AFCEAIMQQ 146
           A    +++ 
Sbjct: 117 ALFYRLLRT 125


>gi|227524220|ref|ZP_03954269.1| ATP-dependent DNA helicase [Lactobacillus hilgardii ATCC 8290]
 gi|227088451|gb|EEI23763.1| ATP-dependent DNA helicase [Lactobacillus hilgardii ATCC 8290]
          Length = 786

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 34/129 (26%)

Query: 22  SEQLLASDP--TRSAWVSANAGSGKT--HILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +EQL        +   ++A AGSGKT   +L   V  ++     P  +L +T +K A  +
Sbjct: 27  TEQLAILRQPYQQPTLINACAGSGKTTIFMLSALVA-IMTGKISPENVLGITFSKKAQTD 85

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M +R  + +     +  ++ +  +                                 T H
Sbjct: 86  MENRYQQYLMQLKAVGIDLAAEGMPYF-----------------------------STFH 116

Query: 138 AFCEAIMQQ 146
           A    +++ 
Sbjct: 117 ALFYRLLRT 125


>gi|166363409|ref|YP_001655682.1| putative DNA helicase [Microcystis aeruginosa NIES-843]
 gi|166085782|dbj|BAG00490.1| putative DNA helicase [Microcystis aeruginosa NIES-843]
          Length = 766

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 50/197 (25%)

Query: 8   QEHSETIDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPST 64
              S  ++L  Q ++ +Q LA        +SA  G+GK+H L      ++          
Sbjct: 8   NRESLLVNLRQQLRAGQQELADWQGGKMAISAVPGAGKSHSLAVAAAMVIAREQLHAKKQ 67

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           L+ +T+T++AAA +  ++ + +                                      
Sbjct: 68  LIIVTYTRSAAASIKAKIKQRLQDLQL--------------------------------- 94

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANIT----------SHFAIADEEQSKKLIEEAKK 174
             +  G  VQT+H     + +++P  + +               I      K LI +  +
Sbjct: 95  --SAQGFSVQTLHGLALQLARRYPELSGLDLESSTLVIPTPSHRIIRNSVEKWLITDPIR 152

Query: 175 --STLASIMLDNNEELK 189
               L  +  D  E  +
Sbjct: 153 YQKLLEGVEFDGEETER 169


>gi|302059772|ref|ZP_07251313.1| pathogenesis-related protein [Pseudomonas syringae pv. tomato K40]
          Length = 631

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 18/114 (15%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVL--------RLLLANAHPSTLLCLTHTKAAAAEMSH 80
           D   S ++ A AGSGKT+ LV+ V         RL+        +  +T+T AA  E+  
Sbjct: 34  DRPTSFFLYAGAGSGKTYSLVEAVRSFKERERERLIFEG---RQIAIITYTNAACDEILR 90

Query: 81  R-------VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           R       ++  I A++    +  + +I +    K  +   +  R L  +  E 
Sbjct: 91  RLEHDPLVIVSTIHAFAWRMIQGFNDDIREWLRVKLGEDIAALQRQLDRSRGEN 144


>gi|289581072|ref|YP_003479538.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
 gi|289530625|gb|ADD04976.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
          Length = 621

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 39  NAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+  V  +L   +     +L +++T+AAA E+  R+ E +      S   L
Sbjct: 14  GPGSGKTTALLDHVEEILEQDDVTFRDILVVSYTRAAAQEIRERLAERLGE----SPRAL 69

Query: 98  SAEITKIQGKKPNKSDMSKA 117
              +  +  K  +  D+S++
Sbjct: 70  QGNVCTMHAKAYDLLDLSRS 89


>gi|150401932|ref|YP_001329226.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|150032962|gb|ABR65075.1| UvrD/REP helicase [Methanococcus maripaludis C7]
          Length = 627

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
             +  +S  AGSGKT+ L+Q V+R  L +   +++ C+T+T +A  E+  ++
Sbjct: 19 RGNNFLLSGGAGSGKTYSLIQ-VIRKALNDNPNASIACITYTNSAVNEIKLKI 70


>gi|110667327|ref|YP_657138.1| DNA helicase II [Haloquadratum walsbyi DSM 16790]
 gi|109625074|emb|CAJ51492.1| DNA helicase II [Haloquadratum walsbyi DSM 16790]
          Length = 618

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 39  NAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+  V ++L   +     +L +++T+AAAAE+  R+ E +     +S   L
Sbjct: 14  GPGSGKTTALLDEVDKILDADDVSIRDILVVSYTRAAAAEVRERLAERL----DISPRAL 69

Query: 98  SAEITKIQGKKPNKSDMSK 116
              +  +  K     ++S+
Sbjct: 70  QGNVATMHAKAYELLNLSR 88


>gi|262200369|ref|YP_003271577.1| superfamily I DNA and RNA helicase-like protein [Gordonia
           bronchialis DSM 43247]
 gi|262083716|gb|ACY19684.1| Superfamily I DNA and RNA helicase-like protein [Gordonia
           bronchialis DSM 43247]
          Length = 599

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKA 73
           +    +++ +A  P  +   V A AG GKT ++  R+  L+        S LL L+ ++A
Sbjct: 5   VELDDAQRRVAEAPVDKRLLVVAGAGQGKTEVVSARLGHLIEEEGLSASSELLVLSFSRA 64

Query: 74  AAAEMSHRVLEI-ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A   +  R+ E  I   +  + +  ++++     ++P     ++ R     + E   G  
Sbjct: 65  AVHAVRTRLSERDIAELNVRTFDSFASQVLIDADEEPQAGFEARIRQATGVLAEHAAG-- 122

Query: 133 VQT--IHAFCEAIM 144
             T  I   C  ++
Sbjct: 123 --TEWIDDLCHVVI 134


>gi|282882603|ref|ZP_06291222.1| DNA helicase II [Peptoniphilus lacrimalis 315-B]
 gi|281297578|gb|EFA90055.1| DNA helicase II [Peptoniphilus lacrimalis 315-B]
          Length = 581

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTHTKAA 74
            + + A    RS  V A AGSGKT+ L  RV+  + AN           ++C+T+T AA
Sbjct: 21 DEQIISALKAGRSFRVEAGAGSGKTYSL-NRVIEWIQANKWNDYRRKKQNVICITYTNAA 79

Query: 75 AAEMSHRVLE 84
             +S R+ +
Sbjct: 80 VDVISQRLSQ 89


>gi|223938584|ref|ZP_03630475.1| pathogenesis-related protein [bacterium Ellin514]
 gi|223892703|gb|EEF59173.1| pathogenesis-related protein [bacterium Ellin514]
          Length = 641

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 11/84 (13%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV--------LRLLLAN 59
          +  +ETID  +  + +  L  D   S ++ A AGSGKT  LV+ +        +R+ L  
Sbjct: 6  ESLNETIDNHADVEIDGCLDLDKPTSFFLFAGAGSGKTRSLVKAIRGLRERSGIRMRLRG 65

Query: 60 AHPSTLLCLTHTKAAAAEMSHRVL 83
               +  +T+T AA  E++ R+ 
Sbjct: 66 ---QQIAVITYTNAACDEITRRLE 86


>gi|238794343|ref|ZP_04637955.1| UvrD/REP helicase [Yersinia intermedia ATCC 29909]
 gi|238726337|gb|EEQ17879.1| UvrD/REP helicase [Yersinia intermedia ATCC 29909]
          Length = 545

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 64/193 (33%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
             ++A  G+GKT +L QR   LL      +P  +L ++    A+  +  RV         
Sbjct: 16  LALTAGPGAGKTEMLAQRADFLLRTGTCRYPKRILAISFKVDASRNLKERVERRCGP--- 72

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLE 150
                                             +        T HAF + I+ +F P+ 
Sbjct: 73  ----------------------------------DLASRFDSYTFHAFAKRIIDRFRPVL 98

Query: 151 AN---ITSHFAIADEE---------------------QSKKLIEEAKKSTLASIMLDNNE 186
                + + + I D++                     Q+ K+   A + T + I LD  +
Sbjct: 99  TGKNALDAGYTIVDKKNGPSRTQIEFGDLVPLAIQILQTSKIARNAIRKTYSDIFLDEFQ 158

Query: 187 ELKKAFYEILEIS 199
           +     Y++++++
Sbjct: 159 DCTNLQYDLVKLA 171


>gi|213970984|ref|ZP_03399105.1| hypothetical protein PSPTOT1_4226 [Pseudomonas syringae pv. tomato
           T1]
 gi|301382274|ref|ZP_07230692.1| pathogenesis-related protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|213924220|gb|EEB57794.1| hypothetical protein PSPTOT1_4226 [Pseudomonas syringae pv. tomato
           T1]
          Length = 631

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 18/114 (15%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVL--------RLLLANAHPSTLLCLTHTKAAAAEMSH 80
           D   S ++ A AGSGKT+ LV+ V         RL+        +  +T+T AA  E+  
Sbjct: 34  DRPTSFFLYAGAGSGKTYSLVEAVRSFKERERERLIFEG---RQIAIITYTNAACDEILR 90

Query: 81  R-------VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           R       ++  I A++    +  + +I +    K  +   +  R L  +  E 
Sbjct: 91  RLEHDPLVIVSTIHAFAWRMIQGFNDDIREWLRVKLGEDIAALQRQLDRSRGEN 144


>gi|332176218|gb|AEE25471.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 690

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +      P ++  + A  GSGKT +  +R+  +         +L  T   +AA E+  R
Sbjct: 6  QQIQFIKSPLKNILLVAPPGSGKTQVAGERIQAMERYGVDMKKMLVTTFNVSAAEELKER 65

Query: 82 VLE 84
          ++ 
Sbjct: 66 LIN 68


>gi|21233616|ref|NP_639533.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|21115483|gb|AAM43415.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
          Length = 1372

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           + A+AG+GKT  L     RL++        +L +T T+AA 
Sbjct: 20 LIEASAGTGKTFTLATLFTRLVVERQLRIGQILAVTFTEAAT 61



 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           R  L   +E      + TIH FC  ++++  LE+ 
Sbjct: 180 RRRLQQAVEEIDLAAIFTIHGFCARVLREHALESG 214


>gi|315656643|ref|ZP_07909530.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315492598|gb|EFU82202.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 581

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTHTKAA 74
            + + A    RS  V A AGSGKT+ L  RV+  + AN           ++C+T+T AA
Sbjct: 21 DEQIISALKAGRSFRVEAGAGSGKTYSL-NRVIEWIQANKWNDYRRQKQNVICITYTNAA 79

Query: 75 AAEMSHRVLE 84
             +S R+ +
Sbjct: 80 VDVISQRLSQ 89


>gi|188993814|ref|YP_001905824.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
          campestris str. B100]
 gi|167735574|emb|CAP53792.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
          campestris]
          Length = 1372

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           + A+AG+GKT  L     RL++        +L +T T+AA 
Sbjct: 20 LIEASAGTGKTFTLATLFTRLVVERQLRIGQILAVTFTEAAT 61



 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           R  L   +E      + TIH FC  ++++  LE+ 
Sbjct: 172 RRRLQQAVEEIDLAAIFTIHGFCARVLREHALESG 206


>gi|13476750|ref|NP_108319.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
 gi|14027511|dbj|BAB53780.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
          Length = 589

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 66/202 (32%), Gaps = 51/202 (25%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78
             SEQ LA D      ++A  GSGKT +++ ++ R + A    P    C+T+T  A  E+
Sbjct: 3   LTSEQKLAVDCPDDLMLTACPGSGKTRVIISKLSRAVDAIRGTPRVAGCITYTNTAVHEI 62

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +     S + DE                              E      V TIH+
Sbjct: 63  ETRLRQH----SQVGDE------------------------------ENYD---VCTIHS 85

Query: 139 FCEA-IMQQFPLEA-NITSHFAIA--DEEQSKKLIEEAKKST---------LASIMLDNN 185
           FC   I + F        + F +   D EQ  +    A                  L   
Sbjct: 86  FCLNHIFRPFCHRIEGYENGFEVITPDSEQFNEYASAASADFNRYNLTFREFEEFSLLQI 145

Query: 186 EELKKAFYEILEISNDEDIETL 207
            E  + F  +L+       E L
Sbjct: 146 SEAGEPFGSVLDTGTIRREEAL 167


>gi|262039564|ref|ZP_06012863.1| UvrD/REP helicase [Leptotrichia goodfellowii F0264]
 gi|261746442|gb|EEY33982.1| UvrD/REP helicase [Leptotrichia goodfellowii F0264]
          Length = 662

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-----NAHPSTLLCLTHTKAAAAEMSHRV 82
           D  +S   +A AG+GKT+ L++ +  ++         H   ++C+T+T  AA E+  R+
Sbjct: 24 IDNYQSTLFNAGAGAGKTYALIECLKYIIKKYEKELKIHNRKIICITYTNVAAKEIKERL 83

Query: 83 LEI 85
             
Sbjct: 84 GNT 86


>gi|146282314|ref|YP_001172467.1| helicase [Pseudomonas stutzeri A1501]
 gi|145570519|gb|ABP79625.1| probable helicase [Pseudomonas stutzeri A1501]
          Length = 665

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 20  TKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
             SE+  A    RS    + A AGSGK+  L+ RV+ +L      P  L  ++ T A+  
Sbjct: 125 APSEEQWAMILGRSPLTRIFAGAGSGKSTTLLLRVVFMLCHLGIEPGRLTVISFTNASCG 184

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITK 103
           ++  ++L ++  W    DE  + +  +
Sbjct: 185 QLREQLLRVLAFWQFPFDERQARQCVR 211


>gi|38637831|ref|NP_942805.1| helicase superfamily protein I [Ralstonia eutropha H16]
 gi|32527169|gb|AAP85919.1| putative helicase, superfamily I [Ralstonia eutropha H16]
          Length = 633

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
          V A  G+GKT +L QR   LL   A   P  +L ++  + AA  ++ RV + 
Sbjct: 37 VLAGPGAGKTELLAQRAAFLLQTGASPAPQRILAISFKRDAARNLARRVRQR 88


>gi|327188053|gb|EGE55281.1| uvrD/REP helicase [Rhizobium etli CNPAF512]
          Length = 1052

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 31/134 (23%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           ++A AG+GKT  +V  +   +L    P  +L  T T  AA E+  R    +         
Sbjct: 7   ITAAAGAGKTTRIVNDIADEVLVRT-PEQILATTFTIKAADELVERARAKLFEQGKADA- 64

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                A  LL        G +  T++A C  I+ +F ++   + 
Sbjct: 65  ---------------------AAQLL--------GARFGTVNAVCSQIVSEFVIDLGRSP 95

Query: 156 HFAIADEEQSKKLI 169
             A+  E     + 
Sbjct: 96  STAVIGESNMSLVF 109


>gi|66770581|ref|YP_245343.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|66575913|gb|AAY51323.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
          campestris str. 8004]
          Length = 1372

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75
           + A+AG+GKT  L     RL++        +L +T T+AA 
Sbjct: 20 LIEASAGTGKTFTLATLFTRLVVERQLRIGQILAVTFTEAAT 61



 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           R  L   +E      + TIH FC  ++++  LE+ 
Sbjct: 180 RRRLQQAVEEIDLAAIFTIHGFCARVLREHALESG 214


>gi|320329788|gb|EFW85776.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 556

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKA 73
           +   ++  L       +  V A  G+GKT +L QR   LL   A   P  +L ++  + 
Sbjct: 17 GVKSLEANALKVVRAGINQSVIAGPGAGKTELLAQRAAFLLQTEAAPTPRRILAISFKRD 76

Query: 74 AAAEMSHRVLEI 85
          AA+ ++ RV + 
Sbjct: 77 AASNLAARVRKR 88


>gi|284166523|ref|YP_003404802.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
 gi|284016178|gb|ADB62129.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
          Length = 624

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 39  NAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+  V  +L         +L +++T+AAA E+  R+ E +      S   L
Sbjct: 14  GPGSGKTTALLDHVEEILEEEGVTFRDILVVSYTRAAAQEVRERLAERLGE----SPRAL 69

Query: 98  SAEITKIQGKKPNKSDMSKA 117
              +  +  K     D+S++
Sbjct: 70  QGNVCTMHAKAYELLDLSRS 89


>gi|291297890|ref|YP_003509168.1| superfamily I DNA and RNA helicase-like protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567110|gb|ADD40075.1| Superfamily I DNA and RNA helicase-like protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 393

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
           +++ AS P     ++A  G+GKTH+LV+R+   +   +   S  L LT
Sbjct: 75  QRVAASAPPGPLLINAGPGTGKTHVLVRRIAYHIEELHIPASQCLVLT 122


>gi|188582300|ref|YP_001925745.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179345798|gb|ACB81210.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 608

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 37/204 (18%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAE 77
                Q           V+   GSGKT + + +  ++      P   +L L+  +A  + 
Sbjct: 3   DLTETQKAILQAVGHQLVTGGPGSGKTTVSILKAAKIAREELKPGQRILFLSFARATVS- 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              RVLE I   S ++ E                                   ++V T H
Sbjct: 62  ---RVLEAIDEESAITREERR-------------------------------RIEVDTYH 87

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +F   I++             I         +   +    A+  L + E+ +K   E+ E
Sbjct: 88  SFFWRILKTHGYLVGFPRRMTILTPPNEAIALSAVRSGYKAARNLSDEEKAEKRAKEVAE 147

Query: 198 ISNDEDIETLIS-DIISNRTALKL 220
                  E  +  D+ ++R A  L
Sbjct: 148 RVRLATEEGKVCFDLFADRVATLL 171


>gi|320322832|gb|EFW78924.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 542

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKA 73
           +   ++  L       +  V A  G+GKT +L QR   LL   A   P  +L ++  + 
Sbjct: 17 GVKSLEANALKVVRAGINQSVIAGPGAGKTELLAQRAAFLLQTEAAPTPRRILAISFKRD 76

Query: 74 AAAEMSHRVLEI 85
          AA+ ++ RV + 
Sbjct: 77 AASNLAARVRKR 88


>gi|90962535|ref|YP_536451.1| DNA helicase [Lactobacillus salivarius UCC118]
 gi|90821729|gb|ABE00368.1| DNA helicase [Lactobacillus salivarius UCC118]
 gi|300215149|gb|ADJ79565.1| DNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 563

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 45/164 (27%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
              +       +  +   AGSGKT  L + V+  +        +LC+T+T  A  E+ +R
Sbjct: 10  QRAIECIRSKTNFIMEGGAGSGKTRSLSE-VIGEIGQRYPDRRILCITYTNNAVNEIINR 68

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           V                                                + V TIH F  
Sbjct: 69  V--------------------------------------------NVKNIVVSTIHKFLW 84

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
            +++QF  E     +  I +E  +K + E      L  I  D+ 
Sbjct: 85  NLIKQFQDEIKWALNELIKEELINKNIPENFDARKLEKITYDDY 128


>gi|228923836|ref|ZP_04087114.1| DNA helicase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228835965|gb|EEM81328.1| DNA helicase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 641

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAA 76
           Q +   L A     +  + A  G+GKT +L  R   LL      +P  +L ++    AA 
Sbjct: 17  QLEKAALAAVKSDCNLAIVAGPGAGKTELLAHRAGYLLQTKKCEYPRKILAISFKVDAAK 76

Query: 77  EMSHRVLEIITAW------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +  RV E           S   D      + + +   P +   S+   ++ T
Sbjct: 77  NLETRVKERYGEEISQRFDSKTFDSFAKHLVDRFRNALPTEYRPSRDYEIIST 129


>gi|241244738|ref|XP_002402374.1| uvrd / recb / pcra DNA helicase, putative [Ixodes scapularis]
 gi|215496329|gb|EEC05969.1| uvrd / recb / pcra DNA helicase, putative [Ixodes scapularis]
          Length = 761

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           + V T H  C  +++    +A +   F I D          + K  + +  +D+ +   K
Sbjct: 1   MWVGTFHGLCNRLLRMHYRDAGLVQTFQILDTADQLA----SIKRMVKANNVDDEKFPPK 56

Query: 191 AFYEILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235
              + +    ++      L +     R  ++L   +     R  +++
Sbjct: 57  EIQKFINACKEDGQRPGDLEAHDPHRRRLIELYQRYQEQCEREGVVD 103


>gi|260170439|ref|ZP_05756851.1| pathogenesis-related protein [Bacteroides sp. D2]
 gi|315918794|ref|ZP_07915034.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692669|gb|EFS29504.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 617

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPSTLLC 67
          ID       E  ++ +  +S ++ A AGSGKTH LV R+L  +        N     +  
Sbjct: 5  IDEKVDLTLEACISPNSRKSFFLFAGAGSGKTHSLV-RLLNKIKDKWEKQLNLEGRHIAV 63

Query: 68 LTHTKAAAAEMSHRV 82
          +T+T AA  E+ +R+
Sbjct: 64 ITYTNAATDEILNRL 78


>gi|194398690|ref|YP_002037962.1| ATP-dependent DNA helicase [Streptococcus pneumoniae G54]
 gi|194358357|gb|ACF56805.1| ATP-dependent DNA helicase [Streptococcus pneumoniae G54]
 gi|319412009|emb|CBY91942.1| ATP-dependent DNA helicase (UvrD) [Streptococcus pneumoniae]
          Length = 605

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
           +   L A     +  V A  G+GKT +L Q++  L   N    P  +L L+    AA+ 
Sbjct: 15 LEETALGAVKDVTNCLVIAGPGAGKTELLAQKLDYLFSTNKCVSPKKILALSFKTDAASN 74

Query: 78 MSHRVLEIITA 88
          +  RV +    
Sbjct: 75 LKERVKKRYGD 85


>gi|296162532|ref|ZP_06845322.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295887240|gb|EFG67068.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 563

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAA 74
           ++     +Q   ++  R     A  G+GKT  +  +   LL     P T++  +T +K A
Sbjct: 1   MLDGLNPKQREVAELRRPCVAIACPGAGKTKTIAAKAALLL---GDPHTVVGAVTFSKDA 57

Query: 75  AAEMSHRVLEIITAWS--HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           A E+  R+L +  A +   L      +   +  GK+   +D  +A  L+  +L   G
Sbjct: 58  AVELRDRILALAGAGAKSRLIAGTFHSLANRQLGKRDIATDGDRA-GLIARVLAELG 113


>gi|325675755|ref|ZP_08155439.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
 gi|325553726|gb|EGD23404.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
          Length = 1094

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 26/157 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           +    G+GKT +LV   +  ++A   P ++L LT ++ AA  +  ++ E + A  H  + 
Sbjct: 41  ILGGPGTGKTTLLVDAAVARIVAGEDPESVLVLTQSRRAATAIREQITERLLAAEHDPES 100

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                     G +P  +     R                T+H++  A+++          
Sbjct: 101 P---------GVQPRATREPLVR----------------TVHSYAFAVLRLQAAAHGNPP 135

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
              +    +   ++ E  +  +A       E L+ A 
Sbjct: 136 -PRLITGAEQDAVLRELLRGDIADGGGMWPERLRPAL 171


>gi|307127255|ref|YP_003879286.1| UvrD/REP helicase family protein [Streptococcus pneumoniae
          670-6B]
 gi|295980931|emb|CBJ57179.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae]
 gi|306484317|gb|ADM91186.1| UvrD/REP helicase family protein [Streptococcus pneumoniae
          670-6B]
          Length = 605

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
           +   L A     +  V A  G+GKT +L Q++  L   N    P  +L L+    AA+ 
Sbjct: 15 LEETALGAVKDVTNCLVIAGPGAGKTELLAQKLDYLFSTNKCVSPKKILALSFKTDAASN 74

Query: 78 MSHRVLEIITA 88
          +  RV +    
Sbjct: 75 LKERVKKRYGD 85


>gi|160431734|ref|YP_001551848.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Choleraesuis]
 gi|5852362|gb|AAD54022.1|AF105019_1 TrhI [Salmonella enterica subsp. enterica serovar Typhi]
 gi|16505828|emb|CAD09706.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|159885275|dbj|BAF92879.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Choleraesuis]
          Length = 618

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
          ++SE   +   T  ++++  +   +  V A  GSGK+  +++ V+  +L     + +  +
Sbjct: 19 KYSEAF-MGKPTDEQRVIIENANANNMVIAAPGSGKSFTMIEAVIS-ILRQFPYAKVGMV 76

Query: 69 THTKAAAAEMSHRVLEIITA 88
          T T+AA   ++ ++   ++ 
Sbjct: 77 TFTRAATNSLAEKLKRRLSK 96


>gi|238029045|ref|YP_002913270.1| Pathogenesis-related protein [Burkholderia glumae BGR1]
 gi|237880622|gb|ACR32950.1| Pathogenesis-related protein [Burkholderia glumae BGR1]
          Length = 652

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 77/220 (35%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--------------LLCLTHTKAAA 75
           P RS ++ A AGSGKT  LV+ VLR L                      +  +T+TK A 
Sbjct: 28  PPRSFFLFAGAGSGKTRTLVE-VLRRLTGVVPHERGGRLANRLRLYGRSIRVVTYTKNAV 86

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           A                           I G +   +D+                + V T
Sbjct: 87  A---------------------------IIGGRLGSNDL----------------VAVST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           IH+FC  ++  F             DE+    LI +       ++ L++ +    A    
Sbjct: 104 IHSFCWELIGGF-------------DEDIRAALIAD------KAVQLEDAKTKAAAKVRG 144

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +  ++      + ++I + R     I+      +    ++
Sbjct: 145 ISDTDRRKFAEIEAEIEALRGVPTFIYHPDKDTYGEGAMQ 184


>gi|159485840|ref|XP_001700952.1| hypothetical protein CHLREDRAFT_142640 [Chlamydomonas reinhardtii]
 gi|158281451|gb|EDP07206.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 208

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 43/154 (27%), Gaps = 68/154 (44%)

Query: 23  EQLLASDPTRSAWV--SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           EQL A     +  V  SA  GSGKT  LV RVL L+                 AA E+  
Sbjct: 88  EQLAAVKDVSAGLVTVSAGPGSGKTRTLVARVLELVQ----------------AADELRK 131

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+ + + A +     +                                      T H+  
Sbjct: 132 RLRDALGATAAEEVVL-------------------------------------GTFHSLS 154

Query: 141 EAIMQQFPL-------------EANITSHFAIAD 161
             +++Q                 A +   F + +
Sbjct: 155 ARLLRQHFQLVDRGAGASGGSRLAGLRKDFRVLE 188


>gi|312140618|ref|YP_004007954.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311889957|emb|CBH49274.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus
           equi 103S]
          Length = 1105

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 26/157 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           +    G+GKT +LV   +  ++A   P ++L LT ++ AA  +  ++ E + A  H  + 
Sbjct: 52  ILGGPGTGKTTLLVDAAVARIVAGEDPESVLVLTQSRRAATAIREQITERLLAAEHDPES 111

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                     G +P  +     R                T+H++  A+++          
Sbjct: 112 P---------GVQPRATREPLVR----------------TVHSYAFAVLRLQAAAHGNPP 146

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
              +    +   ++ E  +  +A       E L+ A 
Sbjct: 147 -PRLITGAEQDAVLRELLRGDIADGGGMWPERLRPAL 182


>gi|257464479|ref|ZP_05628851.1| UvrD/REP helicase [Fusobacterium sp. D12]
          Length = 85

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            + A+AG+GKT+ L    L  L      S +  +T T+ A AE+  R+LE        S
Sbjct: 4  LVLKASAGTGKTYRLSLEYLLSLYRGIPYSEIFVMTFTRKATAEIRERILEFSAEILSHS 63

Query: 94 DE 95
          ++
Sbjct: 64 EK 65


>gi|71280433|ref|YP_269134.1| putative ATP-dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146173|gb|AAZ26646.1| putative ATP-dependent DNA helicase [Colwellia psychrerythraea 34H]
          Length = 622

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 50/122 (40%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLAN------AHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +S  + A AGSGKT  LV  VL+ +  N       +   +  +T+T AA+ E+ HR    
Sbjct: 25  KSFLLFAGAGSGKTRTLVN-VLQEIKNNNLQTLIENGQKVAVITYTNAASNEIQHR---- 79

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                                                  LE      V TIH+F   +++
Sbjct: 80  ---------------------------------------LEYDPIFTVSTIHSFIWELIK 100

Query: 146 QF 147
            F
Sbjct: 101 PF 102


>gi|127512196|ref|YP_001093393.1| UvrD/REP helicase [Shewanella loihica PV-4]
 gi|126637491|gb|ABO23134.1| UvrD/REP helicase [Shewanella loihica PV-4]
          Length = 678

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          T  +  +       A + A  GSGKT  LV+RV RL+     P ++L L + K+A 
Sbjct: 6  TWEQTRVVRHDAGHALIKAVPGSGKTTTLVKRVERLIKTGVEPGSILILMYNKSAT 61


>gi|332076308|gb|EGI86774.1| uvrD/REP helicase family protein [Streptococcus pneumoniae
          GA41301]
          Length = 605

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
           +   L A     +  V A  G+GKT +L Q++  L   N    P  +L L+    AA+ 
Sbjct: 15 LEETALGAVKDVTNCLVIAGPGAGKTELLAQKLDYLFSTNKCVSPKKILALSFKTDAASN 74

Query: 78 MSHRVLEIITA 88
          +  RV +    
Sbjct: 75 LKERVKKRYGD 85


>gi|309389853|gb|ADO77733.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 741

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 50/195 (25%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
                 V A  G+GKT +L      L+ +   +   LL +T+  +A A    R+ + + A
Sbjct: 16  RGGQLAVPAVPGAGKTTVLAHLAAELIASELENNQKLLIVTYMNSAVANFRQRIGDFLAA 75

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                    + ++R           G  V+T+H+    I+++ P
Sbjct: 76  KG-----------------------LPRSR-----------GYSVKTLHSLALQIIKEKP 101

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI----------LEI 198
               I   F + +  +  + I++     L+      N +L K F+ +          L+ 
Sbjct: 102 EARLINQDFELIEAGRRYRWIKD-----LSRKWAGENGDLLKQFFNLEQNSYKFDKYLKK 156

Query: 199 SNDEDIETLISDIIS 213
             ++D    ++ +IS
Sbjct: 157 WKEDDFPAFVASMIS 171


>gi|126463034|ref|YP_001044148.1| putative DNA helicase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104698|gb|ABN77376.1| putative DNA helicase [Rhodobacter sphaeroides ATCC 17029]
          Length = 129

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 12 ETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
          + ++ +     ++++A D    +  V A  GSGKT +LV R+  LL     P  +
Sbjct: 19 QIVEDLGNPVQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLR--MSPRQI 71


>gi|322411788|gb|EFY02696.1| ATP-dependent DNA helicase [Streptococcus dysgalactiae subsp.
          dysgalactiae ATCC 27957]
          Length = 605

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
           +   L A     +  V A  G+GKT +L Q++  L   N    P  +L L+    AA+ 
Sbjct: 15 LEETALGAVKDVTNCLVIAGPGAGKTELLAQKLDYLFSTNKCVSPKKILALSFKTDAASN 74

Query: 78 MSHRVLEIITA 88
          +  RV +    
Sbjct: 75 LKERVKKRYGD 85


>gi|157412044|ref|YP_001481384.1| TrhI [Escherichia coli APEC O1]
 gi|99867069|gb|ABF67714.1| TrhI [Escherichia coli APEC O1]
          Length = 594

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           T+ ++ +  + + +  V A  GSGK+  +++ V+  +L     + +  +T T+AA   +
Sbjct: 4  PTEEQRPVIENASANNMVIAAPGSGKSFTMIEAVIS-ILKKYPYARIGMVTFTRAATNAL 62

Query: 79 SHRVLEIITA 88
          + ++ + ++ 
Sbjct: 63 AAKLQKRLSK 72


>gi|20091191|ref|NP_617266.1| ATP-dependent DNA helicase [Methanosarcina acetivorans C2A]
 gi|19916302|gb|AAM05746.1| ATP-dependent DNA helicase [Methanosarcina acetivorans C2A]
          Length = 612

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 50/169 (29%), Gaps = 68/169 (40%)

Query: 16  LISQTKSEQLLASDPTRSAWVS---------------ANAGSGKTHILVQRVLRLLLANA 60
           L + T  ++      +    +                A             +++  +   
Sbjct: 6   LTTLTSRQRDAVKHVSGPLLILAGAGTGKTTTITGKIAC------------MIK--VRGI 51

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  +L LT ++ AA  M  ++ E++   +++                            
Sbjct: 52  KPEKILALTFSREAARNMEKKISELLGQGTNV---------------------------- 83

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
                      KV T H+FC  +++    +  ++  F I +E  +  LI
Sbjct: 84  -----------KVSTFHSFCAELIRDNSEKCGVSEQFTIFEEIDTAILI 121


>gi|38347859|ref|NP_941108.1| putative DNA helicase [Serratia marcescens]
 gi|190410201|ref|YP_001965702.1| trhI [Klebsiella pneumoniae]
 gi|226807596|ref|YP_002791290.1| TrhI [Enterobacter cloacae]
 gi|226809906|ref|YP_002791600.1| TrhI [Enterobacter cloacae]
 gi|38259336|emb|CAE51561.1| putative DNA helicase [Serratia marcescens]
 gi|146150994|gb|ABQ02760.1| trhI [Klebsiella pneumoniae]
 gi|226425821|gb|ACO53914.1| TrhI [Enterobacter cloacae]
 gi|226426132|gb|ACO54224.1| TrhI [Enterobacter cloacae]
          Length = 594

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           T+ ++ +  + + +  V A  GSGK+  +++ V+  +L     + +  +T T+AA   +
Sbjct: 4  PTEEQRPVIENASANNMVIAAPGSGKSFTMIEAVIS-ILKKYPYARIGMVTFTRAATNAL 62

Query: 79 SHRVLEIITA 88
          + ++ + ++ 
Sbjct: 63 AAKLQKRLSK 72


>gi|93006119|ref|YP_580556.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
 gi|92393797|gb|ABE75072.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
          Length = 1484

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 7   FQEHSETIDLISQTKSEQLLA----SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAH 61
           F E+S+ + L +  + +  +      D T    + A+AG+GKT  L   VLRLL+     
Sbjct: 20  FDEYSDELTLSAVPERKNDVIPAVDVDLTGKHLIEASAGTGKTWTLTGIVLRLLIEARRA 79

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD--EILSAEITKIQGKKPN 110
           P  ++  T T+AAAAEM  R+ + +  +  L      LSAE        P+
Sbjct: 80  PEQIIATTFTRAAAAEMRQRIHDRLVDFYQLLQWVNSLSAEPNNKDALYPD 130



 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 72  KAAAAEMSHRVLEIITAW----------SHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           + AAAE   +V +    W            + D+ ++  +T       +   M++A    
Sbjct: 169 RQAAAEKRKQVKKDRENWLVNQAKYARLDAVMDDPINLHLTGFLLDHVHGYPMAEAIRRT 228

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
             +L T   L V T+ +  +  + ++  E       AI ++   +++ +      L    
Sbjct: 229 ALVLTTLDKLFVGTLDSLAQKWLIEYSSETGHQQGMAIIEDSSIEQVTDSIIHDELRQFQ 288

Query: 182 LDNNEELKKAFY 193
                E  K + 
Sbjct: 289 SRLYYEQPKLYA 300


>gi|206973603|ref|ZP_03234521.1| DNA helicase [Bacillus cereus H3081.97]
 gi|206747759|gb|EDZ59148.1| DNA helicase [Bacillus cereus H3081.97]
          Length = 631

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           ++  VSA  G+GKT +L Q+   LL  N   +P  +L L++   AA  +  RV E I  
Sbjct: 29 NQNMLVSAGPGAGKTELLAQKAAYLLQTNTCENPQKILALSYKVDAAKNLEKRVEERIGK 88


>gi|258593619|emb|CBE69960.1| Putative ATP-dependent DNA helicase (fragment) [NC10 bacterium
           'Dutch sediment']
          Length = 72

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 38/92 (41%)

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AAAEM  RV  ++      +                               
Sbjct: 1   MLALTFTEKAAAEMERRVDLLVPYGFTDT------------------------------- 29

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                   + T HAF + ++++  L   ++  
Sbjct: 30  -------WISTFHAFGDRVLREHALVLGLSPD 54


>gi|121594799|ref|YP_986695.1| UvrD/REP helicase [Acidovorax sp. JS42]
 gi|120606879|gb|ABM42619.1| UvrD/REP helicase [Acidovorax sp. JS42]
          Length = 586

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 52/174 (29%), Gaps = 46/174 (26%)

Query: 31  TRSAWVSANAGSGKTHILVQR-VLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA 88
              A V    GSGKT  L  R  ++ +     P  + L L+ ++AA A    R+L+    
Sbjct: 15  EGHALVIGGPGSGKT-TLALRKAVKRIRDGMLPGQSALFLSFSRAAVA----RILDAAKL 69

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            S  +++                                   L +QT H+F   I++   
Sbjct: 70  ESTKAEQE---------------------------------QLSIQTFHSFFWDILKAHA 96

Query: 149 LEANITSHFAIADEEQSKKLI------EEAKKSTLASIMLDNNEELKKAFYEIL 196
                    +I      K L       +E     L        EE + AF    
Sbjct: 97  YLLGAPHRLSILLPHDEKALSGGLGDEDEGWDEWLVERERLFREEGRIAFDLFA 150


>gi|295110066|emb|CBL24019.1| Superfamily I DNA and RNA helicases [Ruminococcus obeum A2-162]
          Length = 585

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 58/181 (32%), Gaps = 43/181 (23%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSH 91
             V+A AG GKT  +V ++ R L      S   +L +T +  AA  M   + + + A   
Sbjct: 28  IIVTAPAGCGKTTAMVSKIARELSNGHILSNKKILAMTFSVNAA--MK--IKDSLKALLP 83

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
              E +   + K+                                H F   I+ +     
Sbjct: 84  ELVENIQKYLAKVDVANY---------------------------HNFAMRILFKHGYCL 116

Query: 152 N----ITSHFAIADEEQSKK--LIEEAKKSTLASIM----LDNNEELKKAFYEILEISND 201
           N      S F I DE+       I  A    L  +       N EEL  A  +  +I N 
Sbjct: 117 NGEFTHLSDFKIVDEDSPLLNTFITSADSDKLKKVNDAVKASNKEELIAALDDYWDILNR 176

Query: 202 E 202
           +
Sbjct: 177 K 177


>gi|117676144|ref|YP_863720.1| UvrD/REP helicase [Shewanella sp. ANA-3]
 gi|117614968|gb|ABK50421.1| UvrD/REP helicase [Shewanella sp. ANA-3]
          Length = 599

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           +Q L  +   +  V A  GSGKT++LV+   RLL  +    ++  LT T AA  E++ R
Sbjct: 5  KDQGLVIERDDNTLVCALPGSGKTYVLVELTKRLLSRDGA-YSVHLLTFTDAARVELTER 63

Query: 82 VLEIITAWSH 91
          +L  +T  + 
Sbjct: 64 MLHALTPRAM 73


>gi|256752858|ref|ZP_05493697.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748260|gb|EEU61325.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 644

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           +  +  +L   G L V T H+ C  I+++   +     +F I D    K LI+E  K  
Sbjct: 2   KTRVEDLLGYIGDLWVSTFHSACVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 60


>gi|299132400|ref|ZP_07025595.1| DNA helicase II [Afipia sp. 1NLS2]
 gi|298592537|gb|EFI52737.1| DNA helicase II [Afipia sp. 1NLS2]
          Length = 611

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ-------RVLRLLLANAHPSTLLCLTH 70
           S+  ++     D  RS  + A AGSGKT  LV+       R  R L  N     + C+T 
Sbjct: 7   SEADAKVRACLDGHRSFALIAGAGSGKTRSLVEALGRVRDREGRGLRQNG--QRIACITF 64

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           TK A   +  R+              L  +I +      +   + +   L+  
Sbjct: 65  TKRAVEVIKSRLGFDDLYLVSTLHGFLWEQIGRFPDDIRDALRLGRLPALIEK 117


>gi|301059731|ref|ZP_07200627.1| ATP-dependent DNA helicase, RecQ family [delta proteobacterium
            NaphS2]
 gi|300446151|gb|EFK10020.1| ATP-dependent DNA helicase, RecQ family [delta proteobacterium
            NaphS2]
          Length = 1740

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 33   SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            S  + A  GSGKT ++V R   LL +       +L L    ++A  +  R+  ++   ++
Sbjct: 1128 SMLILAGPGSGKTTVIVHRCAYLLEVERVPARHILVLCFNHSSAMVLKKRLRALVGKAAN 1187

Query: 92   L 92
             
Sbjct: 1188 A 1188


>gi|75762199|ref|ZP_00742094.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490314|gb|EAO53635.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 602

 Score = 55.7 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 63/157 (40%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
             V+A AGSGKT     ++  +++ +        +LC+T+TK AA E+            
Sbjct: 10  FCVNAPAGSGKTT----KIKSMIVNHKIKHPIDNILCITYTKRAAEEL------------ 53

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                  G+ + TIH+F    ++ +  +
Sbjct: 54  --------------------------------NKDFNEEGIHISTIHSFLHKFLKIYFCK 81

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                        + K L  E  +  +   + +  E+
Sbjct: 82  ------------TEMKDLYFEMFEDLIKESIENKEEK 106


>gi|84503243|ref|ZP_01001328.1| hypothetical protein OB2597_16812 [Oceanicola batsensis HTCC2597]
 gi|84388484|gb|EAQ01433.1| hypothetical protein OB2597_16812 [Oceanicola batsensis HTCC2597]
          Length = 574

 Score = 55.7 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 33/137 (24%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +I  +  ++ +   P +   V A AGSGKT   V+R+                       
Sbjct: 1   MIELSSQQREIVEAPLKPMVVIACAGSGKTATAVRRL----------------------- 37

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           AEM  R+ +     + LS   ++ +          +++ S  R          GG+++ T
Sbjct: 38  AEMRKRIDDRHGHCALLSFSNVAVDTFNKDYNALLQAEPSDNRR---------GGVEIAT 88

Query: 136 IHAF-CEAIMQQFPLEA 151
           + AF    I++      
Sbjct: 89  VDAFITSNIIRPHGHLV 105


>gi|330883264|gb|EGH17413.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 227

 Score = 55.7 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
          V A  G+GKT +L QR   LL   A   P  +L ++  + AA+ ++ RV + 
Sbjct: 12 VIAGPGAGKTELLAQRAAFLLQTEAAPTPRRILAISFKRDAASNLAARVRKR 63


>gi|290979129|ref|XP_002672287.1| predicted protein [Naegleria gruberi]
 gi|284085862|gb|EFC39543.1| predicted protein [Naegleria gruberi]
          Length = 705

 Score = 55.7 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 41/120 (34%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           +D  +   V A  G GKT +L  R  +++  N +   LL +T ++ A  E+  R+ +   
Sbjct: 128 NDSAKYLVVQAPPGGGKTLVLTFRAKKIIETNPNAC-LLLVTFSRDATREIQERLQKYGV 186

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                                                        V+TIHAF  +I +++
Sbjct: 187 EK----------------------------------------RYDVKTIHAFALSICRKY 206


>gi|292654592|ref|YP_003534489.1| repair helicase [Haloferax volcanii DS2]
 gi|291372778|gb|ADE05005.1| repair helicase [Haloferax volcanii DS2]
          Length = 616

 Score = 55.7 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 39 NAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            GSGKT  L+ +V  +L         +L +++T+AAAAE+  R+ E +
Sbjct: 14 GPGSGKTTALLDKVEEILEQDGVTIRDILVVSYTRAAAAEVRDRLAERL 62


>gi|228899606|ref|ZP_04063861.1| DNA helicase II [Bacillus thuringiensis IBL 4222]
 gi|228860036|gb|EEN04441.1| DNA helicase II [Bacillus thuringiensis IBL 4222]
          Length = 645

 Score = 55.3 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 63/157 (40%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
             V+A AGSGKT     ++  +++ +        +LC+T+TK AA E+            
Sbjct: 2   FCVNAPAGSGKTT----KIKSMIVNHKIKHPIDNILCITYTKRAAEEL------------ 45

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                                  G+ + TIH+F    ++ +  +
Sbjct: 46  --------------------------------NKDFNEEGIHISTIHSFLHKFLKIYFCK 73

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
                        + K L  E  +  +   + +  E+
Sbjct: 74  ------------TEMKDLYFEMFEDLIKESIENKEEK 98


>gi|86609547|ref|YP_478309.1| UvrD/Rep family helicase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558089|gb|ABD03046.1| helicase, UvrD/REP family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 719

 Score = 55.3 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 43/171 (25%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68
            S     ++   ++Q   +  +    ++A  GSGKT IL   +  L+L     P  +   
Sbjct: 5   ASSPFPEVTLRPAQQQALAYQSGPLGIAAVPGSGKTFILELLIADLILNRGIPPERIGVF 64

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T+ ++A   +  R+ + +    +      +                              
Sbjct: 65  TYMRSARGNLISRINQRLQRAGYPDRFTQA------------------------------ 94

Query: 129 GGLKVQTIHAFCEAIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKSTL 177
                 T+H+    ++++ P   E       +I +  + ++L+    ++ L
Sbjct: 95  -----FTLHSLSLRVLREAPSRWE-----ELSILEGYEQERLLSRLCRAWL 135


>gi|85858661|ref|YP_460863.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
 gi|85721752|gb|ABC76695.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
          Length = 606

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 36/143 (25%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAE 77
           Q   +Q    D      V+   GSGKT I + +  ++      P   +L L+  +A  + 
Sbjct: 2   QLTEKQTKIMDAEGHVLVTGGPGSGKTTISILKAAQIAGCGLRPDQKILFLSFARATVS- 60

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              RV+E I     +  E                                   + V+T H
Sbjct: 61  ---RVVEAIEYEQQIPHEQKK-------------------------------RIDVETYH 86

Query: 138 AFCEAIMQQFPLEANITSHFAIA 160
           +F   I++       +    +I 
Sbjct: 87  SFFWRILKAHGYLVGLPRQLSIL 109


>gi|322370163|ref|ZP_08044725.1| UvrD/REP helicase [Haladaptatus paucihalophilus DX253]
 gi|320550499|gb|EFW92151.1| UvrD/REP helicase [Haladaptatus paucihalophilus DX253]
          Length = 608

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 39  NAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+ RV  +L       + LL +++T+AAA E+  R+ E +     +    L
Sbjct: 14  GPGSGKTTELLDRVEDILSQDGVTVNDLLVVSYTRAAANEVRERLAERL----DVDPRSL 69

Query: 98  SAEITKIQGKKPNKSDMSK 116
              +  +  K     ++S+
Sbjct: 70  QGNVCTMHAKAYELLNLSR 88


>gi|262164059|ref|ZP_06031798.1| pathogenesis-related protein [Vibrio mimicus VM223]
 gi|262027587|gb|EEY46253.1| pathogenesis-related protein [Vibrio mimicus VM223]
          Length = 651

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 68/209 (32%), Gaps = 79/209 (37%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--------------TLLCLTHTKAAA 75
           P RS ++ A AGSGKT  LV+ VLR +                     ++  +T+TK A 
Sbjct: 28  PPRSYFLFAGAGSGKTRTLVE-VLRRITGVVKHEKGELLARNLRLYGRSIRVITYTKNAV 86

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             ++ R+ E                                              +KV T
Sbjct: 87  GVINGRLGE-------------------------------------------NDLVKVST 103

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKL-IEEAKKSTLASIMLDNNEELKKAFYE 194
           IHAFC  ++          S F   D+ ++  + I+EA+        L   + +  A   
Sbjct: 104 IHAFCWELI----------SGFN--DDIKAALIAIKEAQLEKETEEALAKPKGITPA--- 148

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFF 223
                   D++ +  DI   R     I+ 
Sbjct: 149 -----KQRDLDEIREDIEGFRNTDLFIYH 172


>gi|10957193|ref|NP_058217.1| putative DNA helicase [Salmonella typhi]
 gi|32765047|ref|NP_569320.2| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|260752049|ref|YP_003237564.1| putative DNA helicase [Escherichia coli O111:H- str. 11128]
 gi|7800246|gb|AAF69842.1|AF250878_3 putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|145848991|emb|CAM91545.1| putative dna helicase [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|257767519|dbj|BAI39013.1| putative DNA helicase [Escherichia coli O111:H- str. 11128]
 gi|313651501|gb|EFS15897.1| uvrD/REP helicase family protein [Shigella flexneri 2a str.
          2457T]
          Length = 594

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           T  ++++  +   +  V A  GSGK+  +++ V+  +L     + +  +T T+AA   +
Sbjct: 4  PTDEQRVIIENANANNMVIAAPGSGKSFTMIEAVIS-ILRQFPYAKVGMVTFTRAATNSL 62

Query: 79 SHRVLEIITA 88
          + ++   ++ 
Sbjct: 63 AEKLKRRLSK 72


>gi|134287620|ref|YP_001109786.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
 gi|134132270|gb|ABO60005.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
          Length = 573

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 77/214 (35%), Gaps = 21/214 (9%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAA 74
           ++ +   +Q   +   R     A  G+GKT +   +    L     P+ ++  +T +K A
Sbjct: 1   MLDELNPQQREVALLRRHCLAIACPGAGKTKMSAAKAAWRL---QDPTAMVGAVTFSKDA 57

Query: 75  AAEMSHRVLEII------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           A E+  R+L +         ++     +   ++ +    +P+ +       +L  +L   
Sbjct: 58  AVELRERILALAPPDAKRRLFAGTFHSLAYKQLHRPGRGRPDIASDGDRLGMLGRVLAEL 117

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEE 187
           G             + +  P+   I  +F  ADE  ++  +  A +  L     +D  + 
Sbjct: 118 GYDW---------KVEEAVPIIERIKMNFGRADEGSAEATLYAAYQDALERNGKIDFQDM 168

Query: 188 LKKAFYEILEIS-NDEDIETLISDIISNRTALKL 220
           L+ A  ++            L+ D   +   L+ 
Sbjct: 169 LRLAVEQMQRGDITPYRFTDLLVDEFQDTDPLQF 202


>gi|331268997|ref|YP_004395489.1| superfamily I DNA helicase [Clostridium botulinum BKT015925]
 gi|329125547|gb|AEB75492.1| superfamily I DNA helicase (rep-like helicase) [Clostridium
           botulinum BKT015925]
          Length = 730

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 68/250 (27%), Gaps = 92/250 (36%)

Query: 1   MIYHNSFQEHSETIDLI-----SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLR 54
           MI  +  +E     D I      +   EQL A     R+  V A  G+GKT  L+++V  
Sbjct: 5   MIEKSILKEFFYLRDKIIEYRYKELNEEQLRAVLSNNRNLAVIACPGAGKTTTLIRKVDY 64

Query: 55  LLLAN-----------------------------------------AHPSTLLCLTHTKA 73
           L+                                             +P+ ++ +T T+A
Sbjct: 65  LVTFGPIYKTKYYPESLNKEDIEILKEYIDYNKVNKRLNFLLRQKAINPNNIMIITFTRA 124

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA  M                                             +         
Sbjct: 125 AAKNMK---------------------------------------KKYKALGNHKNSPFF 145

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H     I+ +  +E  I     I     + KLI+    + L  I  +  +E   +  
Sbjct: 146 GTFHGLFYKILSR--VENRIN----IISTSIAYKLIKGVLSTYLDEISDEKVKETLNSIS 199

Query: 194 EILEISNDED 203
               I+ D+D
Sbjct: 200 YYKTINEDKD 209


>gi|25011383|ref|NP_735778.1| hypothetical protein gbs1341 [Streptococcus agalactiae NEM316]
 gi|24412921|emb|CAD47000.1| unknown [Streptococcus agalactiae NEM316]
          Length = 672

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 12/136 (8%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           M Y  S +     +D+            D   S    A AG+GKT+ L + +  +L    
Sbjct: 1   MTYTISTENKQLELDIQKDINE----CLDNFESFCFDAGAGAGKTYALQKSIEHILKTEG 56

Query: 61  HP-----STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI---TKIQGKKPNKS 112
                    +LC+T+T AA  E+  R+ +     +    E L   I    ++   +  K 
Sbjct: 57  ENLKLRNQKILCITYTNAAKDEILSRIGKNSAILASTIHEFLWGFISIQQELLTIEHEKK 116

Query: 113 DMSKARHLLITILETP 128
              +   +   I++ P
Sbjct: 117 IKEELNGIEQKIIDNP 132


>gi|327534677|gb|AEA93511.1| UvrD/REP helicase [Enterococcus faecalis OG1RF]
          Length = 620

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 10 HSETIDLISQTKS-------EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--A 60
           S   D+   T +         + A     +  V A  G+GKT +L Q+   L   N   
Sbjct: 1  MSNYTDISEWTPASGLSLEPNAIKAVKKEENILVVAGPGAGKTELLAQKAGYLFSTNLCP 60

Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +L ++  K +A  +  R+ +    
Sbjct: 61 TPKKILAISFKKDSAENLKERIDKRYGR 88


>gi|253681687|ref|ZP_04862484.1| superfamily I DNA helicase [Clostridium botulinum D str. 1873]
 gi|253561399|gb|EES90851.1| superfamily I DNA helicase [Clostridium botulinum D str. 1873]
          Length = 726

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 70/250 (28%), Gaps = 92/250 (36%)

Query: 1   MIYHNSFQEHSETIDLI-----SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRV-- 52
           MI  N  +E     D I      +  +EQL A     R+  V A  G+GKT  L++++  
Sbjct: 1   MIEKNIIEEFFYLRDKIIEYRYKELNAEQLSAVLSNDRNLAVIACPGAGKTTTLIRKLDY 60

Query: 53  -------------------------------------LRLLLAN--AHPSTLLCLTHTKA 73
                                                L LLL     +P+ ++ +T T+A
Sbjct: 61  LVTFGTIYKTKYYPKDLNKEDIQILREYINYNKVNKRLNLLLRQKAINPNNIIVITFTRA 120

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA  M                                             +    G    
Sbjct: 121 AAKNMK---------------------------------------KKYKALGNHRGSPFF 141

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            T H     I+ +   + N      I     + KLI+    + L  I  +  +E      
Sbjct: 142 GTFHGLFYKILSREENKIN------IISTSIAYKLIKGVLSTYLDEISDEKVKETLNLIS 195

Query: 194 EILEISNDED 203
               I+ D+D
Sbjct: 196 YYKTINEDKD 205


>gi|170078704|ref|YP_001735342.1| UvrD/REP helicase domain-containing protein [Synechococcus sp. PCC
           7002]
 gi|169886373|gb|ACB00087.1| UvrD/REP helicase domain protein [Synechococcus sp. PCC 7002]
          Length = 749

 Score = 55.3 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 39/191 (20%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHIL-VQRVLRLLLAN 59
           M + +  Q+   T         +  LA   +    ++A  GSGK+H L V  VL L   +
Sbjct: 1   MNHLSVHQQQFLTQLAAGLRPGQDALAQWRSGEMAIAAVPGSGKSHALAVAAVLTLARQS 60

Query: 60  AHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            H    L+ +T T+AAA  +  ++L  + A                              
Sbjct: 61  LHHGQQLVIVTFTRAAAEGIKQKILTHLKAAQLPVV------------------------ 96

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH-FAIADEEQSKKLIEEAKKSTL 177
                      G  VQTIH     I  + P  + +     ++ D   +  ++  A +  +
Sbjct: 97  -----------GFSVQTIHGLALQIASRHPEVSGVDLDSLSLQDIPANHPILRAAVEQWI 145

Query: 178 ASIMLDNNEEL 188
                +  E L
Sbjct: 146 -QAHGEQYERL 155


>gi|206580765|ref|YP_002237037.1| helicase, UvrD/REP family [Klebsiella pneumoniae 342]
 gi|206569823|gb|ACI11599.1| helicase, UvrD/REP family [Klebsiella pneumoniae 342]
          Length = 591

 Score = 55.3 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          + T  ++  AS     A+V+A  G+GKT  ++ R+ R+         +  L+ T +A  E
Sbjct: 6  NLTPEQESFASHVGG-AFVNACPGAGKTRTIIARLARIAATLPSRQGIAILSFTNSAVDE 64

Query: 78 MSHR 81
             R
Sbjct: 65 FRER 68


>gi|90413883|ref|ZP_01221869.1| hypothetical protein P3TCK_18424 [Photobacterium profundum 3TCK]
 gi|90325067|gb|EAS41577.1| hypothetical protein P3TCK_18424 [Photobacterium profundum 3TCK]
          Length = 795

 Score = 55.3 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 49/173 (28%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S T  +    +  + +A   A AG+GKT  LV  +   L      + +L +       
Sbjct: 1   MTSFTPEQTAFINHQSGNALCVAGAGTGKTTTLVGLIANKL-DTVPANEMLVM------- 52

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             M +R                                +     L    +     + V T
Sbjct: 53  --MFNR-----------------------------DIRIDFQAKLQAKGIN--SAVPVHT 79

Query: 136 IHAFCEAIMQQFPL--EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
            H+FC  +++Q     E      F   D +++        KS L ++      
Sbjct: 80  FHSFCMQLLKQTGYLNETGFQLSFNEGDRDKT------IAKSILRTVAAGEKS 126


>gi|88797155|ref|ZP_01112745.1| Superfamily I DNA and RNA helicase [Reinekea sp. MED297]
 gi|88780024|gb|EAR11209.1| Superfamily I DNA and RNA helicase [Reinekea sp. MED297]
          Length = 749

 Score = 54.9 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 50/190 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T  +Q +       A + A AGSGKT  L   V + L A      LL L + KAA  
Sbjct: 17  VQYTDEQQAIIGHEGGHARIIAVAGSGKTQTLTAYVRQRLAAGVPKKRLLVLMYNKAAQI 76

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           +   R+  ++   S                                          V+T 
Sbjct: 77  DFEQRLRSLMPGQSLPD---------------------------------------VRTF 97

Query: 137 HAF----CEAIMQQFPLEANITSHFAIADEEQSK----KLIEEAKKSTLASIMLDNNEEL 188
           H+     C+ +++Q  +   +     +  + + +    +L+ E     LA  +L   ++ 
Sbjct: 98  HSLGYRICQTLIRQGDM---LPFGRTLLSDSEVEMILWQLLRECAPEALADDVLSRKKKW 154

Query: 189 KKAFYEILEI 198
            +     +E+
Sbjct: 155 VEPALAYIEL 164


>gi|330446270|ref|ZP_08309922.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490461|dbj|GAA04419.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 774

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 52/165 (31%), Gaps = 46/165 (27%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S T  +    +  T +A   A AG+GKT  LV  V   L     P  +L L       
Sbjct: 1   MTSFTAEQTAFINHQTGNALCVAGAGTGKTTTLVGLVENKLTT-IAPQKMLVL------- 52

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             M +R           +D     E   I    P                       V T
Sbjct: 53  --MFNR--------DIRTDFKAKLERNGIGANVP-----------------------VHT 79

Query: 136 IHAFCEAIMQQ--FPLEANITSHFAIADEEQS---KKLIEEAKKS 175
            H+FC  +++Q  +  E      F   D +++   + L + A   
Sbjct: 80  FHSFCYQLLRQSGYLAETGYQVDFNNGDSDKAIAKQLLRQMAANE 124


>gi|207341417|gb|EDZ69478.1| YOL095Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 707

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
          +P  +  V A  GSGKT  L+ +VL L+ + N  P  +L  + T  A
Sbjct: 17 EPASTIKVIAGPGSGKTLTLLYKVLHLITVENIKPEEILIFSLTNKA 63


>gi|256271417|gb|EEU06478.1| Hmi1p [Saccharomyces cerevisiae JAY291]
          Length = 706

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
          +P  +  V A  GSGKT  L+ +VL L+ + N  P  +L  + T  A
Sbjct: 17 EPASTIKVIAGPGSGKTLTLLYKVLHLITVENIKPEEILIFSLTNKA 63


>gi|190407254|gb|EDV10521.1| ATP-dependent DNA helicase HMI1, mitochondrial precursor
          [Saccharomyces cerevisiae RM11-1a]
 gi|259149391|emb|CAY86195.1| Hmi1p [Saccharomyces cerevisiae EC1118]
 gi|323331652|gb|EGA73066.1| Hmi1p [Saccharomyces cerevisiae AWRI796]
 gi|323346695|gb|EGA80979.1| Hmi1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 706

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
          +P  +  V A  GSGKT  L+ +VL L+ + N  P  +L  + T  A
Sbjct: 17 EPASTIKVIAGPGSGKTLTLLYKVLHLITVENIKPEEILIFSLTNKA 63


>gi|323307062|gb|EGA60345.1| Hmi1p [Saccharomyces cerevisiae FostersO]
          Length = 706

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
          +P  +  V A  GSGKT  L+ +VL L+ + N  P  +L  + T  A
Sbjct: 17 EPASTIKVIAGPGSGKTLTLLYKVLHLITVENIKPEEILIFSLTNKA 63


>gi|151945539|gb|EDN63780.1| helicase in mitochondria [Saccharomyces cerevisiae YJM789]
          Length = 706

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
          +P  +  V A  GSGKT  L+ +VL L+ + N  P  +L  + T  A
Sbjct: 17 EPASTIKVIAGPGSGKTLTLLYKVLHLITVENIKPEEILIFSLTNKA 63


>gi|94500701|ref|ZP_01307231.1| Superfamily I DNA and RNA helicase [Oceanobacter sp. RED65]
 gi|94427256|gb|EAT12236.1| Superfamily I DNA and RNA helicase [Oceanobacter sp. RED65]
          Length = 738

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          ++ T  +Q +       A V A AG+GKT  L   + R L    +P  +L + + K+A
Sbjct: 4  LAFTPQQQAVIEHVQGHAKVVAVAGAGKTTTLTHFIQRQLEQGQNPRRMLVIMYNKSA 61


>gi|6324477|ref|NP_014546.1| Hmi1p [Saccharomyces cerevisiae S288c]
 gi|59799592|sp|Q12039|HMI1_YEAST RecName: Full=ATP-dependent DNA helicase HMI1, mitochondrial;
          Flags: Precursor
 gi|600463|emb|CAA58184.1| orf 00920 [Saccharomyces cerevisiae]
 gi|841469|gb|AAC49064.1| potential DNA helicase by amino acid sequence similarity
          [Saccharomyces cerevisiae]
 gi|1419944|emb|CAA99107.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814796|tpg|DAA10689.1| TPA: Hmi1p [Saccharomyces cerevisiae S288c]
          Length = 706

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
          +P  +  V A  GSGKT  L+ +VL L+ + N  P  +L  + T  A
Sbjct: 17 EPASTIKVIAGPGSGKTLTLLYKVLHLITVENIKPEEILIFSLTNKA 63


>gi|311278011|ref|YP_003940242.1| hypothetical protein Entcl_0683 [Enterobacter cloacae SCF1]
 gi|308747206|gb|ADO46958.1| hypothetical protein Entcl_0683 [Enterobacter cloacae SCF1]
          Length = 625

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 48/129 (37%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRV 82
           S P RS  + A AGSGKT  L++ +  L              + C+T+T+ A  E+    
Sbjct: 22  SSPPRSFVMVAGAGSGKTTSLIKALAHLADTRGSALRRAGQKISCITYTEVAVGEI---- 77

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
                                                     +       + TIH+F  +
Sbjct: 78  ---------------------------------------AADVGNSQLFHISTIHSFLWS 98

Query: 143 IMQQFPLEA 151
           I++ F L+ 
Sbjct: 99  IIRPFHLDI 107


>gi|118360832|ref|XP_001013647.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89295414|gb|EAR93402.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1093

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 17  ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           I   + ++ +  +  ++   + A AGSGKT  ++ RV  L+   N +P+ +L       A
Sbjct: 28  IKPNEEQEKIIYEDKKNHMQIKACAGSGKTTTILCRVKYLIEKENVNPNKILITAFNVDA 87

Query: 75  AAEMSHRVLEIITA 88
           A  +  ++ ++++ 
Sbjct: 88  AKNVKQKLNQLVSE 101


>gi|329936092|ref|ZP_08285891.1| putative ATP-dependent DNA helicase [Streptomyces
          griseoaurantiacus M045]
 gi|329304410|gb|EGG48289.1| putative ATP-dependent DNA helicase [Streptomyces
          griseoaurantiacus M045]
          Length = 590

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          ++ +  T+ +Q L  D   S + +A  G+GKT  +V R L+          +  ++ T A
Sbjct: 1  MNELKLTEDQQALV-DAEDSLFAAACPGAGKTRAMVARYLKRTAEERR-RGIALISFTNA 58

Query: 74 AAAEMSHR 81
          A  E+  R
Sbjct: 59 AVDEVRRR 66


>gi|86141445|ref|ZP_01059991.1| hypothetical protein MED217_05487 [Leeuwenhoekiella blandensis
           MED217]
 gi|295133620|ref|YP_003584296.1| uvrD/REP helicase [Zunongwangia profunda SM-A87]
 gi|85832004|gb|EAQ50459.1| hypothetical protein MED217_05487 [Leeuwenhoekiella blandensis
           MED217]
 gi|294981635|gb|ADF52100.1| uvrD/REP helicase [Zunongwangia profunda SM-A87]
          Length = 521

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +   V A  G+GKTH +V  +++ L        ++ +T+T +A   +  R+ + I    
Sbjct: 5   GKPKLVIAGPGAGKTHGMVDEIIQALKLLERHRYMIVVTYTNSATKNIKKRLGKKIAIPP 64

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE--AIMQQFP 148
           +L    + + + K      +                    L +Q     C    ++++  
Sbjct: 65  NLFIGTIHSFLNKFIVIPYSSLHNDDV---------NGEKLFIQ-----CGTDDVLKRMF 110

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
             +  T  +       +K  I+    ++L        ++      + +           I
Sbjct: 111 DNSGETPDYK------AKNYIKSRLTTSLHKNGYITYDQTLSLAEKAITNKR-------I 157

Query: 209 SDIISNRTALKLIFFFF 225
            +++SNR     +  F 
Sbjct: 158 KEMLSNRIQFLYVDEFQ 174


>gi|319425164|gb|ADV53238.1| UvrD/REP helicase [Shewanella putrefaciens 200]
          Length = 946

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 46/151 (30%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            R+ +V    GSGKT ++V RV  LL      S +  L  T  AA               
Sbjct: 497 ERAIYVEGCPGSGKTTLVVGRVDHLLTQGTKASEICVLAFTNEAA--------------- 541

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              + +L+   TK           S    L          + V T  ++C  +++     
Sbjct: 542 KAFNNVLAKSFTK----------RSNDLKLYSK------DMFVGTFSSWCNKLLK----- 580

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                 F    ++    L  +A  + +  ++
Sbjct: 581 ------F----DDDQDILSAQASLNAIERLI 601


>gi|111023338|ref|YP_706310.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822868|gb|ABG98152.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 1098

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 35/179 (19%)

Query: 19  QTKSEQLLASDPTRSAW----VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
              ++Q+L + P    W    V    G+GKT +LV   +  +     P ++L LT +K A
Sbjct: 31  DDATQQVLTAPPLGLGWNPWQVLGGPGTGKTSLLVDVAVDRIAGGEDPESVLVLTQSKRA 90

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A     RV E +TA     DE      T+                             V+
Sbjct: 91  AG----RVREEVTAALIGHDEHHGPRATREPL--------------------------VR 120

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           T+H++  A+++             +    +   ++ E     +A       E L+ A  
Sbjct: 121 TVHSYAFAVLRLQAAAHGNPP-PRLITGAEQDAVLREMLHGDIADGGEMWPERLRPALA 178


>gi|242240369|ref|YP_002988550.1| UvrD/REP helicase [Dickeya dadantii Ech703]
 gi|242132426|gb|ACS86728.1| UvrD/REP helicase [Dickeya dadantii Ech703]
          Length = 615

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 45/156 (28%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84
           +  + T    V A  G+GKT +L Q+   L+         ++ L+  K AA  +  RV  
Sbjct: 24  VIRNSTEHNLVLAGPGAGKTELLAQKACFLIETGKCRDKRIIALSFKKDAAQNLQDRVNS 83

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
            +        E                                       T  AFC++I+
Sbjct: 84  RLDLKYRQKFES-------------------------------------TTFDAFCKSIV 106

Query: 145 QQFPLEANITSHFAIADE-----EQSKKLIEEAKKS 175
            +F  ++ +   +  +D+      ++KK +EE K+ 
Sbjct: 107 DRF--KSTLPVAYRPSDDYEIYFPENKKFVEEVKRD 140


>gi|297565040|ref|YP_003684012.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296849489|gb|ADH62504.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 536

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 16  LISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           + ++   EQL    A+       V A AG+GKT  L + V R L        +L LT ++
Sbjct: 1   MSTKLTEEQLAVVGAARRGEHLKVVAFAGAGKTFTLTE-VARALQG----RRILYLTFSR 55

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           A A E   +    +                  Q K   KS + +AR LL   +     L+
Sbjct: 56  ALANEAQEK-FRGLAEAMTNHALAFHKTGKPFQEKGRLKSSLFQARRLLAEAMPELDALR 114


>gi|241589959|ref|YP_002979984.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240868671|gb|ACS66330.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 613

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
               Q   +    +    A  GSGKT  ++ ++   L A+   + +  +T T   A+EM 
Sbjct: 3   LNPSQHRVAYGHGNILAVAGPGSGKTKTIITKIGVTLDADRK-NRVGAVTFTSDTASEMR 61

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           HR+   I       D +   E+        +     K    + T  E    L+
Sbjct: 62  HRLTRDIG-----PDVLKRVELGTFHKLSIDHLRRHKMLGKIATPPEQKTFLR 109


>gi|330883720|gb|EGH17869.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 128

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAA 74
          +   ++  L       +  V A  G+GKT +L QR   LL   A   P  +L ++  + A
Sbjct: 3  VKSLEANALKVVRAGINQSVIAGPGAGKTELLAQRAAFLLQTEAAPTPRRILAISFKRDA 62

Query: 75 AAEMSHRVLEI 85
          A+ ++ RV + 
Sbjct: 63 ASNLAARVRKR 73


>gi|315504945|ref|YP_004083832.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315411564|gb|ADU09681.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 553

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 45/176 (25%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71
           +D ++   +    A+    +  V+A  G+GKT +L QR   LL      +P  +L ++  
Sbjct: 10  VDGLTLEPNAMKAATMSNENVVVAAGPGAGKTELLAQRADFLLRTGQCPYPRRILAVSF- 68

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
                                               K + +   + R    +  +     
Sbjct: 69  ------------------------------------KVDAARNLRERVRRRSGSQLAARF 92

Query: 132 KVQTIHAFCEAIMQQF-PLEAN---ITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
              T HAF + ++  F P       +   + I  +  ++   E+   + L  + L+
Sbjct: 93  DSFTFHAFAKRLIDNFRPALTGQNALNPDYRI--DPDTRIAREQITFADLVPLALE 146


>gi|310779666|ref|YP_003967999.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
 gi|309748989|gb|ADO83651.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
          Length = 721

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 42/181 (23%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78
           + EQ    +       + A  G+GKT IL     +L+         +L LT+  ++    
Sbjct: 6   REEQKKILEYREGRLGIPAVPGAGKTFILSHLAAKLIDKELKDGEEILILTYMNSSVINF 65

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +R+ EI+++ ++                                        +V TIH 
Sbjct: 66  KNRISEILSSETNFK-----------------------------------NKFQVMTIHK 90

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
               I++    +  +++ +          LI  A           +N+     F E  EI
Sbjct: 91  LTNEILRDNLYKIGLSNEYKTITNSNMYHLISMAIND-----YKKDNQNEIDYFIETSEI 145

Query: 199 S 199
           S
Sbjct: 146 S 146


>gi|120597566|ref|YP_962140.1| hypothetical protein Sputw3181_0735 [Shewanella sp. W3-18-1]
 gi|120557659|gb|ABM23586.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
          Length = 711

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 17 ISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQ--RVL--RLLLANAHPSTLLCLTH 70
          I++ + ++ +  + D  +S   +A AG+GKT+ L++  R +    ++    P  + C+T+
Sbjct: 6  IAELEVQKAINNSIDNFKSFRFNAGAGAGKTYALIETLRYVTTNKIVTTKSPQKVACITY 65

Query: 71 TKAAAAEMSHRVLE 84
          T  A  E+  R+  
Sbjct: 66 TNVAVNEIKSRLGN 79


>gi|307322483|ref|ZP_07601834.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306891874|gb|EFN22709.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
          Length = 580

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 50/123 (40%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRVLE 84
             +  + A AG+GKT+ L++  L+ LL +  P        + C+T+T  A A +  R+  
Sbjct: 28  GTNFLIEAGAGAGKTYSLIE-ALKFLLDHEGPRLRRGSQKIACITYTNVATAVIGRRI-- 84

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                                                    +    + V+T+HAFC +++
Sbjct: 85  -----------------------------------------DNNPLVFVETVHAFCWSLV 103

Query: 145 QQF 147
           + F
Sbjct: 104 KSF 106


>gi|300718276|ref|YP_003743079.1| hypothetical protein EbC_37010 [Erwinia billingiae Eb661]
 gi|299064112|emb|CAX61232.1| Uncharacterized protein [Erwinia billingiae Eb661]
          Length = 300

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +S +  + AG+GKT+ LV+ +        +  N     +LC+T+T  A  E++ R+
Sbjct: 26 EKSFYFQSGAGAGKTYALVKAIKYAGQLCAIKKNNSSRKILCITYTNNATNEIAERL 82


>gi|307701589|ref|ZP_07638606.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
 gi|307613268|gb|EFN92520.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
          Length = 421

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ ++ +         V A  G+GKTH + +      LA  +P   L L +T AAA E  
Sbjct: 2   TQEQEAVCESNADRVRVLAGGGTGKTHTMAE------LARRNPEGCLVLAYTVAAAREFY 55

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            R++  +     +    L         + P  +       L    L   G
Sbjct: 56  SRIMNPLVEVRTVHSLALEILRVFPGIEIPEINHEEAIDELAGDCLVDAG 105


>gi|15791353|ref|NP_281177.1| hypothetical protein VNG2620G [Halobacterium sp. NRC-1]
 gi|169237113|ref|YP_001690313.1| DNA helicase II [Halobacterium salinarum R1]
 gi|10582002|gb|AAG20657.1| repair helicase [Halobacterium sp. NRC-1]
 gi|167728179|emb|CAP14967.1| DNA helicase II [Halobacterium salinarum R1]
          Length = 609

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 39 NAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86
            GSGKT  L+  V  +L  +      +L +++T+AAAAE+  R+ E +
Sbjct: 14 GPGSGKTTALLDHVEEILSEDDVSVRDILVVSYTRAAAAEVRERLAERL 62


>gi|192362132|ref|YP_001984180.1| UvrD/REP helicase [Cellvibrio japonicus Ueda107]
 gi|190688297|gb|ACE85975.1| UvrD/REP helicase [Cellvibrio japonicus Ueda107]
          Length = 705

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQ--RVL---RLLLANAHPSTLLCLTHTKAAAAEMSHR- 81
            D  +S   +A AG+GKT+ L+Q  R +   +L+        ++C+T+T  A  E+  R 
Sbjct: 19  IDSFKSFRFNAGAGAGKTYALIQTIRYILRNKLIDLRRKNQQVICITYTNVAVREIKERL 78

Query: 82  ------------------VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
                             +         + D+ L  EI  I  +  +K +   A++  ++
Sbjct: 79  GSSEVVLISTIHDRLWSIIKPYQKELIEIHDQKLRKEIELISNELSDKDNPKLAKYASLS 138

Query: 124 ILETPGGLKVQTIHAF 139
             E         +H+F
Sbjct: 139 EQERID------LHSF 148


>gi|229185446|ref|ZP_04312628.1| Excision endonuclease subunit UvrD [Bacillus cereus BGSC 6E1]
 gi|228598034|gb|EEK55672.1| Excision endonuclease subunit UvrD [Bacillus cereus BGSC 6E1]
          Length = 637

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77
           +   LLA   +    ++A  G+GKT +L  +   L+      +P  +L ++    AA  
Sbjct: 14 LEDSALLAIRASNHVAIAAGPGAGKTELLAHKTGYLIQTGICPNPKKILAISFKTDAARN 73

Query: 78 MSHRV 82
          +  RV
Sbjct: 74 LQERV 78


>gi|213024991|ref|ZP_03339438.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 70

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
          I+      S+     +   S  V A AGSGKT +LV R   LL   
Sbjct: 19 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARG 64


>gi|309808403|ref|ZP_07702302.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
 gi|308168231|gb|EFO70350.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
          Length = 473

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 36 VSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          + A  G+GKTH +V+ +  +     L+ N+    +LC+T+T  A  E+++R+ 
Sbjct: 22 IYAGPGAGKTHFIVENIKNIISTNKLITNSENRKILCITYTNKAVDEIANRLQ 74


>gi|89073018|ref|ZP_01159565.1| hypothetical protein SKA34_12400 [Photobacterium sp. SKA34]
 gi|89051236|gb|EAR56692.1| hypothetical protein SKA34_12400 [Photobacterium sp. SKA34]
          Length = 773

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 41/136 (30%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S T  +    +  + +A   A AG+GKT  LV  V + L     P  +L L       
Sbjct: 1   MTSFTAEQTAFINHLSGNALCVAGAGTGKTTTLVGLVEKKLAT-IAPQNMLVL------- 52

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             M +R                         +   K+ + +  H +   +         T
Sbjct: 53  --MFNR-----------------------DIRTDFKAKLERNSHGVNVPVH--------T 79

Query: 136 IHAFCEAIMQQFPLEA 151
            H+FC  +++Q    A
Sbjct: 80  FHSFCYQLLRQSGYLA 95


>gi|238892774|ref|YP_002917508.1| putative helicase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545090|dbj|BAH61441.1| putative helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 557

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
            +S  V A AG+GKT +L Q+   LL       P  +LCL++ K A   +  RV++    
Sbjct: 24  DQSVSVLAGAGAGKTELLAQKSNYLLQTGKCMWPKRILCLSYKKEAQENIKTRVMKRCGQ 83

Query: 89  WSHLSDEILSAEITK-----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                D        K      +   P          L+       G  K+    +F   +
Sbjct: 84  RGERFDSYTFDAFCKSIVDRFKDVLPENKRPLNNYDLVFNQKANNGKDKI----SF--DL 137

Query: 144 MQQFPLEA 151
           ++   L+ 
Sbjct: 138 IRSLALDI 145


>gi|90578950|ref|ZP_01234760.1| hypothetical protein VAS14_04573 [Vibrio angustum S14]
 gi|90439783|gb|EAS64964.1| hypothetical protein VAS14_04573 [Vibrio angustum S14]
          Length = 773

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 41/136 (30%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + S T  +    +    +A   A AG+GKT  LV  V + L     P  +L L       
Sbjct: 1   MTSFTAEQTAFINHLAGNALCVAGAGTGKTTTLVGLVEKKLAT-IAPQNMLVL------- 52

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             M +R                         +   K+ + +  H +   +         T
Sbjct: 53  --MFNR-----------------------DIRTDFKAKLERNSHGVNVPVH--------T 79

Query: 136 IHAFCEAIMQQFPLEA 151
            H+FC  +++Q    A
Sbjct: 80  FHSFCYQLLRQSGYLA 95


>gi|309790706|ref|ZP_07685256.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
 gi|308227237|gb|EFO80915.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
          Length = 829

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74
          ++  T  +  + +     A V A AG+GKT  +V RV RL+      P  +L  +  +AA
Sbjct: 1  MLHLTDQQHQIVAHSHGPALVFAVAGAGKTTAMVHRVERLVRERVFAPRRILLSSFNRAA 60

Query: 75 AAEMSHRVLEIITAWSHLS 93
                 + + +  W H  
Sbjct: 61 V----DTIGQALDQWPHCK 75


>gi|227876814|ref|ZP_03994923.1| possible ATP-dependent DNA helicase [Mobiluncus mulieris ATCC
           35243]
 gi|227842711|gb|EEJ52911.1| possible ATP-dependent DNA helicase [Mobiluncus mulieris ATCC
           35243]
          Length = 421

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ ++ +         V A  G+GKTH + +      LA  +P   L L +T AAA E  
Sbjct: 2   TQEQEAVCESNADRVRVLAGGGTGKTHTMAE------LARRNPEGCLVLAYTVAAAREFY 55

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            R++  +     +    L         + P  +       L    L   G
Sbjct: 56  SRIMNPLVEVRTVHSLALEILRVFPGIEIPEINHEEAIDELAGDCLVDAG 105


>gi|154246977|ref|YP_001417935.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154161062|gb|ABS68278.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 608

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 37/204 (18%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAE 77
                Q           V+   GSGKT + + +  ++      P   +L L+  +A  + 
Sbjct: 3   DLTEAQKEILQAVGHQLVTGGPGSGKTTVSILKAAKIAREELKPGQRILFLSFARATVS- 61

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              RVLE I   S ++ E                    + R            ++V T H
Sbjct: 62  ---RVLEAIDEESAITRE-------------------ERQR------------IEVDTYH 87

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           +F   I++             I         +   +    A+  L + E+ +K   E  E
Sbjct: 88  SFFWRILKTHGYLVGFPRRMTILTPPNEAIALSAVRSGYKAAKNLSDEEKAEKRAKEEAE 147

Query: 198 ISNDEDIETLIS-DIISNRTALKL 220
                  E  +  D+ ++R A  L
Sbjct: 148 RVRLATEEGKVCFDLFADRVATLL 171


>gi|312874821|ref|ZP_07734840.1| UvrD/REP helicase [Lactobacillus iners LEAF 2053A-b]
 gi|311089566|gb|EFQ47991.1| UvrD/REP helicase [Lactobacillus iners LEAF 2053A-b]
          Length = 642

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 36 VSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          + A  G+GKTH +V+ +  +     L+ N+    +LC+T+T  A  E+++R+ 
Sbjct: 22 IYAGPGAGKTHFIVENIKNIISTNKLITNSENRKILCITYTNKAVDEIANRLQ 74


>gi|315653960|ref|ZP_07906876.1| UvrD/REP helicase subfamily [Lactobacillus iners ATCC 55195]
 gi|315488656|gb|EFU78302.1| UvrD/REP helicase subfamily [Lactobacillus iners ATCC 55195]
          Length = 642

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 36 VSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRVL 83
          + A  G+GKTH +V+ +  +     L+ N+    +LC+T+T  A  E+++R+ 
Sbjct: 22 IYAGPGAGKTHFIVENIKNIISTNKLITNSENRKILCITYTNKAVDEIANRLQ 74


>gi|218263837|ref|ZP_03477813.1| hypothetical protein PRABACTJOHN_03503 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222510|gb|EEC95160.1| hypothetical protein PRABACTJOHN_03503 [Parabacteroides johnsonii
           DSM 18315]
          Length = 610

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 38/210 (18%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPSTLLCLTHTKAAAAEMSHRV-- 82
            +S ++ A AGSGKTH LV  +L  +              +  +T+T AA  E+  R+  
Sbjct: 18  RKSFFLFAGAGSGKTHSLVV-LLNKIRDKWGQKFKIENRHVAVITYTNAATDEIISRLNY 76

Query: 83  -----LEIITAWSHLSDEILSAEITK------IQGKKPNKSDMSKARHL-LITILETPGG 130
                +  I ++     +   ++I K       + K   +  ++KAR     T L   G 
Sbjct: 77  SPLFHVSTIHSFVWNVIQSYQSDIKKYYLRFKEEEKAELEEKINKARKKDGKTYLNNVGK 136

Query: 131 L--------KVQTIHAF--------CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
                    K++T+H F         E           I +   I + +  +K+I +   
Sbjct: 137 FDKVIKSIAKIETVHKFIYNPNGNNFEYNALSHAEVIKIGAKM-IVENKLLQKIIAQQYP 195

Query: 175 STLASIMLDNNEELKKAFYEILEISNDEDI 204
             L     D  +EL +AF+E+      E+ 
Sbjct: 196 FLLIDESQDTKKELVQAFFELERNFGGENF 225


>gi|311977964|ref|YP_003987084.1| putative ATP-dependent DNA helicase [Acanthamoeba polyphaga
           mimivirus]
 gi|308204914|gb|ADO18715.1| putative ATP-dependent DNA helicase [Acanthamoeba polyphaga
           mimivirus]
          Length = 1031

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + A AGSGKT  ++ R+  ++    A    +  +T +K AA +   R+ E+   + + 
Sbjct: 105 LIACAGSGKTRSVIGRIKFMVEHGLADKDEIYAITFSKHAATDFHRRIRELFPDYENF 162


>gi|296185028|ref|ZP_06853438.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296049862|gb|EFG89286.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
          Length = 350

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 55/213 (25%), Gaps = 92/213 (43%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------------------- 59
           ++        +  V A  G+GKT +++ R+  L                           
Sbjct: 29  QREAVLSNENNYVVIACPGAGKTQVIINRIDYLCTFGPIYKTNYVPHSLQLGDLELMREY 88

Query: 60  ------------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
                                    +P+ ++ +T TKAAA  M  R + +  +       
Sbjct: 89  LNNDSSGKNTIIINRIIHIINDLSINPNNMVVITFTKAAAVNMKKRYINMTGSKRTPFF- 147

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                                  T H     I+ +     N   
Sbjct: 148 --------------------------------------GTFHGLFYKILIRHIGRIN--- 166

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
              I D  +S ++I E   S L S+  +  +E+
Sbjct: 167 ---IIDSSKSYRIINEVLISFLDSVGDEKVKEV 196


>gi|196250344|ref|ZP_03149037.1| UvrD/REP helicase [Geobacillus sp. G11MC16]
 gi|196210233|gb|EDY04999.1| UvrD/REP helicase [Geobacillus sp. G11MC16]
          Length = 615

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-L 65
           Q   +  D+++ +  +      P     ++SA  GSGKTH +  +    +      ++ +
Sbjct: 18  QSVLKHKDILNISSQQADFILQPLNYDCFLSACPGSGKTHSVSLKFAYEINNWISRTSGI 77

Query: 66  LCLTHTKAAAAEMSHRVLEIITA 88
             L+ T  AA E+ +R   I+  
Sbjct: 78  AVLSFTNNAANEIKNRANNILKE 100


>gi|330824161|ref|YP_004387464.1| hypothetical protein Alide2_1552 [Alicycliphilus denitrificans
           K601]
 gi|329309533|gb|AEB83948.1| hypothetical protein Alide2_1552 [Alicycliphilus denitrificans
           K601]
          Length = 625

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 48/127 (37%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLE 84
           P RS  + A AGSGKT  L++ +  L              + C+T+T+ A  E       
Sbjct: 24  PPRSFVMVAGAGSGKTTSLIKAMAHLAETRGPALRRAGQQIACITYTEVAVGE------- 76

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                           I+   G  P                       + TIH+F  +++
Sbjct: 77  ----------------ISADVGASPL--------------------FHISTIHSFLWSVI 100

Query: 145 QQFPLEA 151
           + F  + 
Sbjct: 101 RPFHSDI 107


>gi|325276065|ref|ZP_08141877.1| pathogenesis-related protein [Pseudomonas sp. TJI-51]
 gi|324098787|gb|EGB96821.1| pathogenesis-related protein [Pseudomonas sp. TJI-51]
          Length = 648

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 77/209 (36%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--------------TLLCLTHTKAA 74
           +P RS ++ A AGSGKT  LV+ VLR L                     ++  +T+TK A
Sbjct: 26  EPPRSYFLFAGAGSGKTRTLVE-VLRRLTGVIEHDKGNKLARRLRMYGRSIRVVTYTKNA 84

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            + ++ R+ +                                              + V 
Sbjct: 85  VSVINGRLGD-------------------------------------------NDLVCVS 101

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           TIH+FC  ++  F               +  ++ +   K++ LA    +   + +     
Sbjct: 102 TIHSFCWELISGF--------------NDDIREALVAVKEAQLAKETAEAQAKPRG---- 143

Query: 195 ILEISNDEDIETLISDIISNRTALKLIFF 223
            +  +   D++ +  DI + R     I+ 
Sbjct: 144 -ITPAKQRDLDEIKDDIEAFRATEVFIYH 171


>gi|313898400|ref|ZP_07831937.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312956782|gb|EFR38413.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 581

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 56/174 (32%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           +  N    + E     +    EQ++       S  V A AGSGKT+ L  +V+  + +N 
Sbjct: 1   MIENLHGRNYELAKAEADKVDEQIIEVLQAGHSFRVEAGAGSGKTYSL-NKVIEWIQSNK 59

Query: 61  ------HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
                     ++C+T+T AA   ++ R+ +                              
Sbjct: 60  WAEYSRKKQNVICITYTNAAVNVIAERLSKDSFILP------------------------ 95

Query: 115 SKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEANI---TSHFAIADEEQ 164
                               TIH+F    ++Q+     NI      F + DE  
Sbjct: 96  -------------------STIHSFAWNAIKQYQSFLINIVTNAPDF-LPDEGD 129


>gi|291563842|emb|CBL42658.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
          SS3/4]
          Length = 119

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 2  IYHNSFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
          +  N    + E     +    EQ++       S  V A AGSGKT+ L  +V+  + +N 
Sbjct: 1  MIENLHGRNYELAKAEADKVDEQIIEVLQAGHSFRVEAGAGSGKTYSL-NKVIEWIQSNK 59

Query: 61 ------HPSTLLCLTHTKAAAAEMSHRVLE 84
                    ++C+T+T AA   ++ R+ +
Sbjct: 60 WAEYSRKKQNVICITYTNAAVNVIAERLSK 89


>gi|15894290|ref|NP_347639.1| superfamily I DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023912|gb|AAK78979.1|AE007616_1 Superfamily I DNA helicase (rep-like helicase) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508417|gb|ADZ20053.1| Superfamily I DNA helicase (rep-like helicase) [Clostridium
           acetobutylicum EA 2018]
          Length = 732

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 46/153 (30%)

Query: 44  KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT I+  R+  L+ L       ++ +T TKAAA  M  R                     
Sbjct: 96  KTSIITNRIRHLMSLKKVSTDNIIVITFTKAAAVNMKRR--------------------- 134

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                              I    +       T H+    I+ +         +  I +E
Sbjct: 135 ------------------YINYFNSRKTPFFGTFHSLFYKILSRH------KGNIKIIEE 170

Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
            Q   +++      +  +  D   E+      +
Sbjct: 171 IQKYNIVKSVLMKYMDEVNDDKLREVINDISSL 203


>gi|321116569|dbj|BAJ72268.1| DNA helicase [Acidovorax sp. KKS102]
          Length = 625

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 48/127 (37%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLE 84
           P RS  + A AGSGKT  L++ +  L              + C+T+T+ A  E       
Sbjct: 24  PPRSFVMVAGAGSGKTTSLIKAMAHLAETRGPALRRAGQQIACITYTEVAVGE------- 76

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                           I+   G  P                       + TIH+F  +++
Sbjct: 77  ----------------ISADVGASPL--------------------FHISTIHSFLWSVI 100

Query: 145 QQFPLEA 151
           + F  + 
Sbjct: 101 RPFHSDI 107


>gi|229115358|ref|ZP_04244766.1| hypothetical protein bcere0017_16530 [Bacillus cereus Rock1-3]
 gi|228668078|gb|EEL23512.1| hypothetical protein bcere0017_16530 [Bacillus cereus Rock1-3]
          Length = 646

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 49/185 (26%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRV---LRLLLANAHPSTLLCLTHTKAAAAEM 78
           SEQ       ++A + A  GSGKT +L+ ++   ++ +  +     +  +THT  A  E+
Sbjct: 38  SEQKSVILAEKNANIIAGPGSGKTTVLIAKIALVIKRIKDSKKEKGICIITHTNVAVDEI 97

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +                                   + R + I+ LE P    + TIH 
Sbjct: 98  KN-----------------------------------QLRKIGISDLEYPN--FIGTIHD 120

Query: 139 FCEAIMQQFPLEA--NITSHFA--IADEEQSKKLIEEAKKST--LASIMLDNNEELKKAF 192
           F       F  +A   +  +    + DE+  KKL  E  +               +K+ +
Sbjct: 121 FFNHF---FAHKAYQELYPNKKGIVYDEDMYKKLFIEIFEEYKPFTYTYAPPTSRIKETY 177

Query: 193 YEILE 197
            E  +
Sbjct: 178 LEFYD 182


>gi|253751712|ref|YP_003024853.1| DNA helicase [Streptococcus suis SC84]
 gi|253755574|ref|YP_003028714.1| DNA helicase [Streptococcus suis BM407]
 gi|148925327|gb|ABR19651.1| putative helicase superfamily I [Streptococcus suis SC84]
 gi|251816001|emb|CAZ51618.1| DNA helicase [Streptococcus suis SC84]
 gi|251818038|emb|CAZ55827.1| DNA helicase [Streptococcus suis BM407]
          Length = 605

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
           +   L       ++ V A  G+GKT +L Q++  L   N    P  +L L+    AAA 
Sbjct: 15 LEDAALEVVKDVTNSLVIAGPGAGKTELLAQKLDYLFSTNKCISPKKILALSFKTDAAAN 74

Query: 78 MSHRVLEIITA 88
          +  RV +    
Sbjct: 75 LKDRVKKRYGD 85


>gi|262200376|ref|YP_003271584.1| superfamily I DNA and RNA helicase-like protein [Gordonia
           bronchialis DSM 43247]
 gi|262083723|gb|ACY19691.1| Superfamily I DNA and RNA helicase-like protein [Gordonia
           bronchialis DSM 43247]
          Length = 603

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 20  TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAA 76
            +S++ +A  P      V A AG GKT ++  R+  L+        + ++ L+ ++AA  
Sbjct: 16  DESQRAVAEAPADARLLVIAGAGQGKTEVVASRIEYLVEDEGLSASTEIMALSFSRAAVH 75

Query: 77  EMSHRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            +  R+ +  I      + + L++ +    G +P      + R 
Sbjct: 76  AVRTRLDVRDIARTDVRTFDSLASYLLSQNGIEPAGDFNERVRA 119


>gi|238796706|ref|ZP_04640212.1| Superfamily I DNA and RNA helicase [Yersinia mollaretii ATCC
          43969]
 gi|238719437|gb|EEQ11247.1| Superfamily I DNA and RNA helicase [Yersinia mollaretii ATCC
          43969]
          Length = 542

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          +EQ  A        ++A  GSGKT +L  +V  ++        ++ ++ T  A+ E+  R
Sbjct: 8  AEQNQAIQYESDMVITARPGSGKTSVLSCKVRNMVSELRPYQGIIAISFTNKASDELGRR 67


>gi|146320787|ref|YP_001200498.1| DNA helicase [Streptococcus suis 98HAH33]
 gi|145691593|gb|ABP92098.1| DNA helicase [Streptococcus suis 98HAH33]
          Length = 610

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
           +   L       ++ V A  G+GKT +L Q++  L   N    P  +L L+    AAA 
Sbjct: 20 LEDAALEVVKDVTNSLVIAGPGAGKTELLAQKLDYLFSTNKCISPKKILALSFKTDAAAN 79

Query: 78 MSHRVLEIITA 88
          +  RV +    
Sbjct: 80 LKDRVKKRYGD 90


>gi|115526052|ref|YP_782963.1| superfamily I DNA/RNA helicase-like protein [Rhodopseudomonas
          palustris BisA53]
 gi|115519999|gb|ABJ07983.1| superfamily I DNA and RNA helicases-like protein
          [Rhodopseudomonas palustris BisA53]
          Length = 594

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
          +   T  ++  A  P+  A+V A  G GKT  +VQR  + ++    P   +  L+ T +A
Sbjct: 1  MSEPTPEQRAFAEHPSE-AFVQACPGGGKTRTIVQR-AQNIVQGLPPRKGIAVLSFTNSA 58

Query: 75 AAE 77
            E
Sbjct: 59 IDE 61


>gi|255712729|ref|XP_002552647.1| KLTH0C09856p [Lachancea thermotolerans]
 gi|238934026|emb|CAR22209.1| KLTH0C09856p [Lachancea thermotolerans]
          Length = 713

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 27/133 (20%)

Query: 16  LISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71
           + + T S+  +   A +P  +  V A  GSGKT  L+ +V  L+         +L L+ T
Sbjct: 1   MPTPTPSQNEVIQCAYEPATTVKVIAGPGSGKTLTLMLKVRELISKGIVGADEVLVLSLT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A   + +++  I +     +D I    +T +  +                       +
Sbjct: 61  NKAVDNVINQLNSIFSELETTTDGIQGDVLTDLVAQ-----------------------I 97

Query: 132 KVQTIHAFCEAIM 144
            V TIH     ++
Sbjct: 98  GVYTIHGLANRVV 110


>gi|319440134|ref|ZP_07989290.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Corynebacterium variabile DSM 44702]
          Length = 1075

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 24/166 (14%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A+AGSGKT+ L + +   L       ++L              R  +II      + 
Sbjct: 6   IIRASAGSGKTYRLTELLTDRLTHPTDDGSVL--------------RPSQIIATTFTRAA 51

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                +  +I+G   ++  + +A  L   +        + T+++    I+  F L+A  +
Sbjct: 52  AAELTD--RIRGTLVDRGLLDQAAALPTAL--------IGTVNSVTGRILTDFALDAGRS 101

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
              A+  E+  +     A    +A     + + L +  Y+ +E   
Sbjct: 102 PDLAVLTEQSQQTAFTRATDHLIAEAEDAHRDLLARTGYDAVEDRG 147


>gi|82000378|sp|Q5UR49|YR568_MIMIV RecName: Full=Putative ATP-dependent DNA helicase R568
 gi|55417181|gb|AAV50831.1| unknown [Acanthamoeba polyphaga mimivirus]
          Length = 695

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + A AGSGKT  ++ R+  ++    A    +  +T +K AA +   R+ E+   + + 
Sbjct: 105 LIACAGSGKTRSVIGRIKFMVEHGLADKDEIYAITFSKHAATDFHRRIRELFPDYENF 162


>gi|146318588|ref|YP_001198300.1| DNA helicase [Streptococcus suis 05ZYH33]
 gi|145689394|gb|ABP89900.1| DNA helicase [Streptococcus suis 05ZYH33]
          Length = 514

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
           +   L       ++ V A  G+GKT +L Q++  L   N    P  +L L+    AAA 
Sbjct: 25 LEDAALEVVKDVTNSLVIAGPGAGKTELLAQKLDYLFSTNKCISPKKILALSFKTDAAAN 84

Query: 78 MSHRVLEIITA 88
          +  RV +    
Sbjct: 85 LKDRVKKRYGD 95


>gi|159030183|emb|CAO91075.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 766

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 50/197 (25%)

Query: 8   QEHSETIDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPST 64
              +  ++L  Q ++ +Q LA        +SA  G+GK+H L      ++          
Sbjct: 8   NRENLLVNLRQQLRAGQQELADWQGGKMAISAVPGAGKSHSLAVAAAMVIAREQLHAKKQ 67

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           L+ +T+T++AAA +  ++ + +                                      
Sbjct: 68  LIIVTYTRSAAASIKAKIKQRLQDLQL--------------------------------- 94

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANIT----------SHFAIADEEQSKKLIEEAKK 174
             +  G  VQT+H     + +++P  + +               I      K LI +  +
Sbjct: 95  --SAQGFSVQTLHGLALQLARRYPELSALDLESSTLVIPTPSHRIIRNSVEKWLIADPIR 152

Query: 175 --STLASIMLDNNEELK 189
               L  +  D  E  +
Sbjct: 153 YQKLLEGVEFDGEETER 169


>gi|330814533|ref|YP_004362708.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
 gi|327374525|gb|AEA65876.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
          Length = 573

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAA 74
          ++ +   +Q   +   R     A  G+GKT +   +    L     P+ ++  +T +K A
Sbjct: 1  MLDELNPQQREVALLRRHCLAIACPGAGKTKMSAAKAAWRL---QDPTAMVGAVTFSKDA 57

Query: 75 AAEMSHRVLEI 85
          A E+  R+L +
Sbjct: 58 AVELRERILAL 68


>gi|320324250|gb|EFW80329.1| UvrD/REP helicase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 846

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL---RLLLANAHPSTLLC 67
           +E +     T  +  +      S  + A AGSGK+  +V R+L   R L        +  
Sbjct: 141 AEYLKGQEPTADQWKMIFSRDPSTCIVAGAGSGKSTTMVLRLLVLHRYL--GIPKENISV 198

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           +T T+ +  +   ++ E+   W     E ++ +I +
Sbjct: 199 VTFTRESRKDFRRKLAEVFALWEIDLTEKITGQIVR 234


>gi|121583276|ref|YP_973712.1| pathogenesis-related protein [Polaromonas naphthalenivorans CJ2]
 gi|120596534|gb|ABM39970.1| pathogenesis-related protein [Polaromonas naphthalenivorans CJ2]
          Length = 649

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 49/195 (25%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +P RS ++ A AGSGKT  LV+ VLR L                                
Sbjct: 27  EPPRSYFLFAGAGSGKTRTLVE-VLRRLT-----------------------------GV 56

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
             H   E L+  +          +    A  ++   L     + V TIH+FC  ++    
Sbjct: 57  LKHEKGEQLARRLRTYGRSIRVVTYTKNAVAVINGRLGDNDLVGVSTIHSFCWELI---- 112

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
                 S F   D+      I EA  +      L+      +A    +  +   D++ + 
Sbjct: 113 ------SGFN--DD------IREALIAV-KEAQLEKETAKAQAKPRGITAAKQRDLDEIK 157

Query: 209 SDIISNRTALKLIFF 223
           +DI   RT    ++ 
Sbjct: 158 ADIEGFRTTDVFMYH 172


>gi|226305705|ref|YP_002765665.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
 gi|226184822|dbj|BAH32926.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
          Length = 1103

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 33/158 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V  + G+GKT +LV   ++ +     P ++L LT ++ AA ++  ++   +  +      
Sbjct: 49  VLGSPGTGKTSLLVDLAVQKISGGEDPESVLVLTQSRRAATQVREQITAGLLGYEQERGP 108

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANIT 154
             + E                                V+T+H++  A+++ Q     N  
Sbjct: 109 QATREPL------------------------------VRTVHSYAFAVLRLQAAAHGNAP 138

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
               +    +   ++ E  +  +    L   E L+ A 
Sbjct: 139 P--RLITGAEQDSVLREMLRGDIEDGALRWPERLRPAL 174


>gi|149235009|ref|XP_001523383.1| hypothetical protein LELG_05229 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452792|gb|EDK47048.1| hypothetical protein LELG_05229 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 607

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 65/210 (30%), Gaps = 59/210 (28%)

Query: 20  TKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
             S QL+A +    P     + +  G GK+  + +R+  LL        ++ L+ T  A 
Sbjct: 3   LTSAQLVAVNKGHAPGTVLSIQSGPGCGKSLCISKRIESLLAKGVKADEIIVLSLTNRAV 62

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             + + +     + +                                        L ++T
Sbjct: 63  NSLRNTIYNSFGSVA--------------------------------------NDLVIKT 84

Query: 136 IHAFCEAIMQQFPLE--ANITSHFAIADEEQSK----------KLIEEAKKSTLA----S 179
            H+F   +++    E  A     +++ D+   +          K++E+A           
Sbjct: 85  FHSFASMLLEDNGAEYHAGKPP-YSVLDDASWRSFADFFNAKPKILEQATLEVKDGASLE 143

Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLIS 209
            + +      K F EI++  +   +   + 
Sbjct: 144 AIAEKYAIPVKRFREIVDYMDQNGLVRYLG 173


>gi|254467290|ref|ZP_05080701.1| hypothetical protein RBY4I_3903 [Rhodobacterales bacterium Y4I]
 gi|206688198|gb|EDZ48680.1| hypothetical protein RBY4I_3903 [Rhodobacterales bacterium Y4I]
          Length = 650

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV-----LRLLLANAHPSTLLC 67
          T D  +       L+ D  RS ++ A AGSGKT  L + +       L     H   +  
Sbjct: 8  TRDAGADATIRACLSLDQPRSFFLFAGAGSGKTRSLKEALEGLDTQTLTTLRKHSRKIAV 67

Query: 68 LTHTKAAAAEMSHRV 82
          +T+T AAA E++ RV
Sbjct: 68 ITYTNAAADEITRRV 82


>gi|213420836|ref|ZP_03353902.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
          Length = 39

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 9  EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHIL 48
          + S  +D ++  + E + A  P  +  V A AGSGKT +L
Sbjct: 2  DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVL 39


>gi|330952482|gb|EGH52742.1| hypothetical protein PSYCIT7_14129 [Pseudomonas syringae Cit 7]
          Length = 643

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 77/239 (32%), Gaps = 70/239 (29%)

Query: 10  HSETIDLISQTKSEQL---LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-----AH 61
            S  ID        ++   +A  P +   V A AGSGKT  L++ +  ++  +     A 
Sbjct: 1   MSRRIDSPDTDADREIHACIAETPPQPFVVRAGAGSGKTTSLIKALDWVISEHGASMRAK 60

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
              + C+T+T  AA E+           + ++D+ L                        
Sbjct: 61  KQKVACITYTDLAAKEI----------LADVNDDPL------------------------ 86

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANI----TSHFAIADEEQSKKLIEEAKKSTL 177
                    + V TIH+F  +I + F  +  +         I + E+  K      + T 
Sbjct: 87  ---------VHVSTIHSFYWSITKTFQADIKVWLQNDLRRRITELEEEFKNYSSRVRQTT 137

Query: 178 ASIMLDNNEELKKAFYEILEIS---------------NDEDIETLISDIISNRTALKLI 221
                 + +   ++   I  +                  EDI  L   ++ NR   + +
Sbjct: 138 RDRNKADQQRYARSLETIAGVKTFNYGVGSDYAKGVLGHEDILQLADFLLQNRPLFRRV 196


>gi|71065685|ref|YP_264412.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychrobacter
           arcticus 273-4]
 gi|71038670|gb|AAZ18978.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychrobacter
           arcticus 273-4]
          Length = 1495

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 17  ISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           +S+ K   + A D   T    + A+AG+GKT  L   VLRLL+     P  ++  T T+A
Sbjct: 47  MSEQKENVIPAVDVALTGQHLIEASAGTGKTWTLTGIVLRLLIEARRAPEQIIATTFTRA 106

Query: 74  AAAEMSHRVLEIITAWSHLSD--EILSAEITKIQGKKPN 110
           AAAEM  R+ + +  +  L      LSAE        P+
Sbjct: 107 AAAEMRQRIHDRLVDFYQLLQWVNSLSAEPNNKDALYPD 145


>gi|116620801|ref|YP_822957.1| superfamily I DNA/RNA helicase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116223963|gb|ABJ82672.1| Superfamily I DNA and RNA helicases and helicase subunits-like
            protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 1586

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%)

Query: 7    FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
             Q   E    +   +   + A  P    +V    G+GKT  L +RVL  L+  A P+ +L
Sbjct: 1088 LQSLLERFRSLGHDEKYDMKAGLPENIEFVFGPPGTGKTTHLAERVLLPLMNGAEPARVL 1147

Query: 67   CLTHTKAAAAEMSHRVLEIITAWSHLSD 94
             L  T  AA  +  R+L+ +   +   +
Sbjct: 1148 VLAPTNKAADVLIARILDAMGTDTSNKE 1175


>gi|330971053|gb|EGH71119.1| hypothetical protein PSYAR_11194 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 471

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 44/145 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V+A AG GKT    Q +   L  +     +L LTHT A  A + +R+       +     
Sbjct: 15  VTAPAGCGKT----QLIADTLAEHREAKPVLVLTHTNAGVAALRNRLKRAGIPGASYD-- 68

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                                + T+  FC  I+ +FP+ +    
Sbjct: 69  -------------------------------------IGTLDGFCIRIISKFPMRSRHNP 91

Query: 156 H-FAIADEEQSKKLIEEAKKSTLAS 179
               + D       I  A    L++
Sbjct: 92  AILLLLDRRNDYPAIRAAAGQLLSA 116


>gi|229490969|ref|ZP_04384802.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
 gi|229322085|gb|EEN87873.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
          Length = 1120

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 33/158 (20%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V  + G+GKT +LV   ++ +     P ++L LT ++ AA ++  ++   +  +      
Sbjct: 66  VLGSPGTGKTSLLVDLAVQKISGGEDPESVLVLTQSRRAATQVREQITAGLLGYEQERGP 125

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANIT 154
             + E                                V+T+H++  A+++ Q     N  
Sbjct: 126 QATREPL------------------------------VRTVHSYAFAVLRLQAAAHGNAP 155

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
               +    +   ++ E  +  +    L   E L+ A 
Sbjct: 156 P--RLITGAEQDSVLREMLRGDIEDGALRWPERLRPAL 191


>gi|119384179|ref|YP_915235.1| pathogenesis-related protein [Paracoccus denitrificans PD1222]
 gi|119373946|gb|ABL69539.1| pathogenesis-related protein [Paracoccus denitrificans PD1222]
          Length = 650

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV-----LRLLLANAHPSTLLC 67
          T D  +       L+ D  RS ++ A AGSGKT  L + +       L     H   +  
Sbjct: 8  TRDAGADATIRACLSLDQPRSFFLFAGAGSGKTRSLKEALEGLDTQTLTTLRKHSRKIAV 67

Query: 68 LTHTKAAAAEMSHRV 82
          +T+T AAA E++ RV
Sbjct: 68 ITYTNAAADEITRRV 82


>gi|312144169|ref|YP_003995615.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
 gi|311904820|gb|ADQ15261.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
          Length = 736

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 40/190 (21%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
                 V A  G+GKT +L      L+    +    +L +T+  +A A            
Sbjct: 16  RGGQLAVPAVPGAGKTTVLAHLAADLITEELNSGQKILIVTYMNSAVANFR--------- 66

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                         K+ G       + ++R           G  V+T+H+    I+++ P
Sbjct: 67  --------------KMIGNCLAAKGLPRSR-----------GYSVKTLHSLALEIIKEKP 101

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLAS---IMLD--NNEELKKAFYEILEISNDED 203
               I   F + +  +  + I++      A    ++LD  N E+    F +  +   DED
Sbjct: 102 EARLINQDFELIESGRRFRWIKQLSSKWAAENNDLLLDYFNLEKNSYHFKKYSKRWKDED 161

Query: 204 IETLISDIIS 213
               +S +IS
Sbjct: 162 FPAYVSSMIS 171


>gi|270664412|ref|ZP_06222427.1| ATP-dependent DNA helicase rep [Haemophilus influenzae HK1212]
 gi|270316861|gb|EFA28580.1| ATP-dependent DNA helicase rep [Haemophilus influenzae HK1212]
          Length = 46

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
          L+     +Q      T    V A AGSGKT +++ ++  L+
Sbjct: 6  LMKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLI 46


>gi|162447923|ref|YP_001621055.1| DNA helicase [Acholeplasma laidlawii PG-8A]
 gi|161986030|gb|ABX81679.1| REP family DNA helicase [Acholeplasma laidlawii PG-8A]
          Length = 713

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71
          + T+ ++           +  +AG+GKTH+LV+R+  L+     +P  +L LT T
Sbjct: 4  NYTEDQRYAIKTDAPYFLLIGSAGTGKTHVLVERIDYLVKQIKLNPKHILILTTT 58


>gi|297626181|ref|YP_003687944.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii
          subsp. shermanii CIRM-BIA1]
 gi|296921946|emb|CBL56506.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii
          subsp. shermanii CIRM-BIA1]
          Length = 1123

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          +  L+ Q ++     + P  +       G GKT  LV+ V + + A AH   L+ LT ++
Sbjct: 2  SFQLLDQQRAFVEACARPHGAVLALGGPGVGKTTALVEAVAQRVEAGAHMDRLVVLTWSR 61

Query: 73 AAAAEMSHRVLEIITAWSHLS 93
           AA  +  R++  + +     
Sbjct: 62 PAAQRLRARIVARLASSQLAP 82


>gi|118443754|ref|YP_877708.1| superfamily I DNA helicase [Clostridium novyi NT]
 gi|118134210|gb|ABK61254.1| superfamily I DNA helicase (rep-like helicase) [Clostridium novyi
           NT]
          Length = 727

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 65/250 (26%), Gaps = 93/250 (37%)

Query: 19  QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN------------------ 59
           +   EQ+ A      +  V A  G+GKT  L++RV  L+                     
Sbjct: 24  ELNEEQMKAVLSDENNLAVIACPGAGKTTTLIRRVDYLVTFGPIYNTDYCPEEITNRDLN 83

Query: 60  -----------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
                                     + ++ +T T+AAA  M                  
Sbjct: 84  ILEDYLNYNKTNTRLNYLLRQKAIDSNNIIIITFTRAAAKNMK----------------- 126

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
                                      +    G     T H     I+ +   E  I   
Sbjct: 127 ----------------------KKYKELGNHKGIPFFGTFHGLFYKILSR--TEDKI--- 159

Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED------IETLISD 210
             I +   S KLI+    + L  I  D  +E   +       ++D++       + + S+
Sbjct: 160 -EIINTSISYKLIKGVLSTYLDEISDDKVKETLNSISYYKTFTDDKEKFNPNMDKDIFSE 218

Query: 211 IISNRTALKL 220
                   KL
Sbjct: 219 CYRAYEDFKL 228


>gi|83720983|ref|YP_443233.1| pathogenesis-like protein [Burkholderia thailandensis E264]
 gi|257139467|ref|ZP_05587729.1| pathogenesis-related protein [Burkholderia thailandensis E264]
 gi|83654808|gb|ABC38871.1| pathogenesis-related protein [Burkholderia thailandensis E264]
          Length = 639

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL-------CLTHTKAAAAEMSHRVL 83
          RS ++ A AGSGKT  LV  V R  +   H   L         +T+T AA  E+  R+ 
Sbjct: 26 RSFFLYAGAGSGKTRSLVSAV-RKTIDGEHGRQLTLTGKKVGVITYTNAACDEIKQRLE 83


>gi|303239693|ref|ZP_07326218.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
 gi|302592864|gb|EFL62587.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
          Length = 745

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 35/141 (24%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSH 80
             +L+         + A  G GKTH L      ++    H P  +L +T+  +A      
Sbjct: 7   QRELVEQYRGGYCAIPAIPGGGKTHCLSLWAAEMIANGLHKPGKILIVTYMNSAVNNFKQ 66

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+                                  A  L    + +     V TIH  C
Sbjct: 67  RI----------------------------------ASELKNRGIISGKDYFVSTIHGLC 92

Query: 141 EAIMQQFPLEANITSHFAIAD 161
             I+++ P        F I D
Sbjct: 93  LQIIKEKPDLVITNEEFEIID 113


>gi|326316689|ref|YP_004234361.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373525|gb|ADX45794.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 645

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLT 69
          D  +  +    +A+ P +   V A AGSGKT  L++ +  ++  +     A    + C+T
Sbjct: 9  DTDADREIHACIAAMPPQPFVVRAGAGSGKTTSLIKALDWVVSEHGASMRAKKQKVACIT 68

Query: 70 HTKAAAAEM 78
          +T  AA EM
Sbjct: 69 YTDLAANEM 77


>gi|170724961|ref|YP_001758987.1| hypothetical protein Swoo_0596 [Shewanella woodyi ATCC 51908]
 gi|169810308|gb|ACA84892.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908]
          Length = 707

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 37  SANAGSGKTHILVQRV----LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +A AG+GKT+ L++ +    +  + A   P  + C+T+T  A  E+  R+          
Sbjct: 28  NAGAGAGKTYALIETLKYVTINKIAATKSPQKVACITYTNVAVNEIKSRLGNSDAVKVST 87

Query: 93  SDEILSAEITKIQ 105
             E +   I + Q
Sbjct: 88  IHERIWKIIKRAQ 100


>gi|255527693|ref|ZP_05394550.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|255508606|gb|EET84989.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
          Length = 736

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 55/213 (25%), Gaps = 92/213 (43%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------------------- 59
           ++        +  V A  G+GKT +++ R+  L                           
Sbjct: 29  QREAVLSNENNYVVIACPGAGKTQVIINRIDYLCTFGPIYKTNYVPHSLQLGDLELMREY 88

Query: 60  ------------------------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
                                    +P+ ++ +T TKAAA  M  R + +  +       
Sbjct: 89  LNNDSSGKNTIIINRIIHIINDLSINPNNMVVITFTKAAAVNMKKRYINMTGSKRTPFF- 147

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                                  T H     I+ +     N   
Sbjct: 148 --------------------------------------GTFHGLFYKILIRHIGRIN--- 166

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
              I D  +S ++I E   S L S+  +  +E+
Sbjct: 167 ---IIDSSKSYRIINEVLISFLDSVGDEKVKEV 196


>gi|295838506|ref|ZP_06825439.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB74]
 gi|295827027|gb|EFG65192.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB74]
          Length = 681

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           + V T H+ C  I+++   +   TS F+I D   SK+L+    +  
Sbjct: 1   MWVSTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 46


>gi|148988509|ref|ZP_01819956.1| hypothetical protein CGSSp6BS73_06765 [Streptococcus pneumoniae
          SP6-BS73]
 gi|147926190|gb|EDK77264.1| hypothetical protein CGSSp6BS73_06765 [Streptococcus pneumoniae
          SP6-BS73]
          Length = 512

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          D+ +Q K+ +    +   +  + ANAGSGKT  L +++        +   L  +T T+ A
Sbjct: 3  DIATQDKNVKKELLEYQGNILILANAGSGKTTFLTKKLKSDSKRLNNYQKLAAITFTRNA 62

Query: 75 AAEMSHRVLEI 85
            E+  ++++I
Sbjct: 63 TEEIKQKLVDI 73


>gi|295086862|emb|CBK68385.1| Superfamily I DNA and RNA helicases [Bacteroides xylanisolvens
          XB1A]
          Length = 546

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAA 74
          I  +  +Q +         V A  GSGKT  +  R+ +LL  N  +    +  ++ T  A
Sbjct: 3  IQLSAQQQAVVGCNEPRIVVKACPGSGKTFSVAARMAKLLRENNLSRHRGIAAISFTNTA 62

Query: 75 A----AEMSH 80
                E+  
Sbjct: 63 CEVIQKELKE 72


>gi|253572840|ref|ZP_04850239.1| UvrD/REP helicase [Bacteroides sp. 1_1_6]
 gi|251837572|gb|EES65664.1| UvrD/REP helicase [Bacteroides sp. 1_1_6]
          Length = 593

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAA 74
          I  +  +Q +         V A  GSGKT  +  R+ +LL  N  +    +  ++ T  A
Sbjct: 3  IQLSAQQQAVVGCNEPRIVVKACPGSGKTFSVAARMAKLLRENNLSRHRGIAAISFTNTA 62

Query: 75 A----AEMSH 80
                E+  
Sbjct: 63 CEVIQKELKE 72


>gi|297157456|gb|ADI07168.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
           BCW-1]
          Length = 1132

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 43/99 (43%)

Query: 49  VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
            +RV       A P  +L LT ++ AA E+  R+   +                      
Sbjct: 5   TERV----RGGADPERILVLTFSRKAAVELRDRMAARLGGAR------------------ 42

Query: 109 PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
                                G +  T H+FC A+++  
Sbjct: 43  ---------------------GPQATTFHSFCYALVRAH 60


>gi|187928595|ref|YP_001899082.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|241114173|ref|YP_002973648.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|187725485|gb|ACD26650.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|240868746|gb|ACS66404.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 573

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          + +    Q   +D        A  G+GKT  +  +   LL   A    +  +T  K AA 
Sbjct: 6  LDELNPSQREVADLRLHCVAVACPGAGKTKTIATKAAILLADPA--CRVGAVTFNKEAAT 63

Query: 77 EMSHRVLEIITAWSHL 92
          E+  R+  +    S  
Sbjct: 64 ELQERIRALAGPASKA 79


>gi|323442492|gb|EGB00121.1| hypothetical protein SAO46_1665 [Staphylococcus aureus O46]
          Length = 251

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
           +   L A   +    ++A  G+GKT +L  +   L+      +P  +L ++    AA  
Sbjct: 18 LEDSALHAIRASSHVAIAAGPGAGKTELLAHKAGYLIETGMCPYPKKILAISFKTDAARN 77

Query: 78 MSHRVL 83
          +  RV 
Sbjct: 78 LQERVE 83


>gi|197286280|ref|YP_002152152.1| plasmid-related helicase [Proteus mirabilis HI4320]
 gi|194683767|emb|CAR44810.1| putative plasmid-related helicase [Proteus mirabilis HI4320]
          Length = 630

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 21/147 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKA 73
            I   +     A     S  + A  G+GKT  L Q+   LL     PS   +L ++    
Sbjct: 13  GIDDLEPNAWQALRQRESTSIIAGPGAGKTEFLAQKAAYLLETGLCPSNKKILAISFKTD 72

Query: 74  AAAEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKA---------- 117
           AA  ++ RV E  +        S   D      I + +   P     SK           
Sbjct: 73  AAKNLADRVKERCSEEVSNRFISMTFDAFTKNLIDRFRMALPEHHRPSKRYEISFPSFHQ 132

Query: 118 -RHLLITILETPGGLKVQTIHAFCEAI 143
            + L+ +     G   V  I++F + +
Sbjct: 133 EKQLISSFRNNFGNA-VG-IYSFTQRL 157


>gi|228997243|ref|ZP_04156867.1| hypothetical protein bmyco0003_18260 [Bacillus mycoides Rock3-17]
 gi|228762517|gb|EEM11440.1| hypothetical protein bmyco0003_18260 [Bacillus mycoides Rock3-17]
          Length = 380

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMS 79
           +Q        +  + A  GSGKT +L  +   LL  N + S  +  +THT  A  E+ 
Sbjct: 4  EQQKDVILREDTLNIIAGPGSGKTTVLTAKCALLLNENKNKSKGICLITHTNVAVDEIK 62


>gi|323439377|gb|EGA97100.1| hypothetical protein SAO11_1801 [Staphylococcus aureus O11]
          Length = 641

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77
           +   L A   +    ++A  G+GKT +L  +   L+      +P  +L ++    AA  
Sbjct: 18 LEDSALHAIRASSHVAIAAGPGAGKTELLAHKAGYLIETGMCPYPKKILAISFKTDAARN 77

Query: 78 MSHRVL 83
          +  RV 
Sbjct: 78 LQERVE 83


>gi|218677632|ref|ZP_03525529.1| UvrD/REP helicase [Rhizobium etli CIAT 894]
          Length = 213

 Score = 52.2 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 29/103 (28%)

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAAEM+ RV  I       +  +++  +                                
Sbjct: 1   AAAEMARRVERICRDVLGANAGVMADALH-----------------------------WS 31

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            T H     +++ +  +  + + F I D E S  L+   +   
Sbjct: 32  GTFHGIGARLLRDYAQQIGLDADFTIHDREDSADLMNLIRHDL 74


>gi|148380045|ref|YP_001254586.1| DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153934057|ref|YP_001384341.1| ATP-dependent DNA helicase UvrD [Clostridium botulinum A str. ATCC
           19397]
 gi|153935329|ref|YP_001387878.1| ATP-dependent DNA helicase UvrD [Clostridium botulinum A str. Hall]
 gi|148289529|emb|CAL83629.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152930101|gb|ABS35601.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152931243|gb|ABS36742.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium botulinum
           A str. Hall]
          Length = 593

 Score = 52.2 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 46/128 (35%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAAAEMSHRVLE 84
            D   +  + A  G+GKT+ LV+ +  +L  +      S + C+T+T  AA E+++R+  
Sbjct: 15  IDINTNFKIIAGPGAGKTYWLVRHIKHVLEESKILKSASKIACITYTTVAAEEINNRLKA 74

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF-CEAI 143
                                                         +++ TIH+F    +
Sbjct: 75  ------------------------------------------NSDRVEISTIHSFLYNNV 92

Query: 144 MQQFPLEA 151
           ++ +    
Sbjct: 93  IKPYIYLL 100


>gi|226951235|ref|ZP_03821699.1| DNA helicase II [Acinetobacter sp. ATCC 27244]
 gi|226838029|gb|EEH70412.1| DNA helicase II [Acinetobacter sp. ATCC 27244]
          Length = 583

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 48/146 (32%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-- 62
           N+    +E   LIS ++ +Q    D      + A AG+GKT+ L++ +  ++   +    
Sbjct: 2   NAELNPAEQASLISLSQIQQ--CIDNRHCFRLEAGAGAGKTYSLIESLKYIIKNKSAEFA 59

Query: 63  -STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
              + C+T+T  A  E+ +R       ++                               
Sbjct: 60  DKRVACITYTNVAKDEILNRTDNHPLIYAD------------------------------ 89

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQF 147
                        TIHAFC  ++Q F
Sbjct: 90  -------------TIHAFCWELIQPF 102


>gi|313837609|gb|EFS75323.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL037PA2]
 gi|314927510|gb|EFS91341.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL044PA1]
 gi|314972548|gb|EFT16645.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL037PA3]
          Length = 1035

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 7/128 (5%)

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            H   LL +T  ++AA E+  RV E +    S L+     ++       +  +  +++  
Sbjct: 2   VHMENLLLVTFNRSAARELRGRVYERLVNTRSLLAGSRKPSDPCDEALIRLGQDGLTR-- 59

Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178
             + + L+      + T H F   ++ +  + ++      +        L  E       
Sbjct: 60  --VESALDAFDKAVITTTHEFASRMLVELGVLSDHDPSSVLM--TDLTPLATEVSDDHYL 115

Query: 179 SIMLDNNE 186
           +  LD + 
Sbjct: 116 ARYLDCDH 123


>gi|283835663|ref|ZP_06355404.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
 gi|291068878|gb|EFE06987.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
          Length = 705

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 13  TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRV----LRLLLANAHPSTLL 66
             + I + + ++ + +  D   S   +A AG+GKT+ L++ +    +  ++A      + 
Sbjct: 2   LTNEIKELEVQKSVINHVDNFNSFRFNAGAGAGKTYALIETLKYVTINKIIATRSSQKIA 61

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
           C+T+T  A  E+  R+            E+L   I + Q
Sbjct: 62  CITYTNVAVNEIKKRLGNSEVVHVSTIHEMLWDIIKRAQ 100


>gi|86159643|ref|YP_466428.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776154|gb|ABC82991.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 591

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          +   +EQ       ++ +V+A  G+GKT ++V+  LR          +L L+ ++ AA E
Sbjct: 4  AALTAEQEAVVLSDKTVFVTACPGAGKTRVIVEAFLREGGRAQAAHGVLVLSFSRCAADE 63

Query: 78 MSHR 81
          +  R
Sbjct: 64 IRKR 67


>gi|260907486|ref|ZP_05915808.1| plasmid-related helicase [Brevibacterium linens BL2]
          Length = 631

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKA 73
            +   +     A     S  V+A  G+GKT  L QR   LL       P  +L +++ + 
Sbjct: 15  GVPDLEPAAWEALRYRGSTAVTAGPGAGKTEFLAQRATYLLQTGLCPAPQKILAISYKRE 74

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           +A  ++ RV+  +   +H  + +     TK
Sbjct: 75  SAVNLAKRVVARVPEAAHRFESMTFDAFTK 104


>gi|146168499|ref|XP_001016833.2| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|146145189|gb|EAR96588.2| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 881

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  T  +      P  R   ++A AGSGKT  +++   + L    +P  +   T    A+
Sbjct: 18  LKYTNEQLEFIHAPKNRDIKITACAGSGKTQCVLEFTKQALKEGFNPKEICITTFNIQAS 77

Query: 76  AEMSHRVLEIITAWSHLSDEILS-----AEITKIQGKKPNKSDMSKARH 119
            +M  R +E++  +     EIL+      +  K+  K  ++ +++K   
Sbjct: 78  NDMKKRAIELMGKFQADQIEILNFDKIITKFFKMIQKSKSQKELNKQNQ 126


>gi|222445159|ref|ZP_03607674.1| hypothetical protein METSMIALI_00780 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434724|gb|EEE41889.1| hypothetical protein METSMIALI_00780 [Methanobrevibacter smithii
           DSM 2375]
          Length = 858

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 46/137 (33%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           +  D  S  + +++          + A AG+GKTH L+ +   L+   N  P  +L L+ 
Sbjct: 26  DNFDGKSLDEQQRIACILNDCDLEIIAGAGTGKTHTLLAKAEYLIEKKNISPDDILFLSF 85

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           +K+   E+  ++   +                                            
Sbjct: 86  SKSCVEELIEKLNYNVPT------------------------------------------ 103

Query: 131 LKVQTIHAFCEAIMQQF 147
               TIH+F  +++ ++
Sbjct: 104 ---STIHSFGLSLINEY 117


>gi|292558177|gb|ADE31178.1| ATP-dependent DNA helicase PcrA [Streptococcus suis GZ1]
          Length = 692

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           + T H+ C  I+++         +F I D  + + L+    K  L ++ LD  +  +++ 
Sbjct: 17  IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRSLM----KRILKNLNLDPKKWSERSI 72

Query: 193 YEIL-----EISNDEDIETLISDIISN 214
              +     ++ +D+  E    D+ + 
Sbjct: 73  LGTISNAKNDLIDDKAFEAQAGDLYTQ 99


>gi|325001476|ref|ZP_08122588.1| UvrD/REP helicase [Pseudonocardia sp. P1]
          Length = 836

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 27/149 (18%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
                V    G+GKT +L+  V+R + A A P +LL L  ++ AA E+  R         
Sbjct: 4   RGPLRVLGGPGTGKTSLLLDAVVRRVRAGAPPGSLLLLVGSRRAAEELRGR--------- 54

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                 L+A +T+   +      +   R LL           V+T+H++   +++     
Sbjct: 55  ------LTALLTQGGDEIAGDFGVRTTRELL-----------VRTVHSYAFGVLRLHAAR 97

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLAS 179
                   +    +   ++ E     + S
Sbjct: 98  HE-DPPPRLLASAEQDVVVRELLAGEIES 125


>gi|326315434|ref|YP_004233106.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372270|gb|ADX44539.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 665

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 44/201 (21%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               ++ + +   ++  ++A AG+GKT  L  +   L+        +L L ++ A  A +
Sbjct: 16  PNDEQKAVLNTAAKTVLINALAGTGKTTTLATKAADLVQMRGA-RRVLMLAYSDAGLAAL 74

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+   + A +                                        +++ T+  
Sbjct: 75  HDRLGRYMPADAR--------------------------------------EVRIMTVEQ 96

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198
            C  ++Q   L  N      +A+  + + LI +A  + L  +  +   E        L++
Sbjct: 97  LCAGLLQAQGLPVN-----TLAEPLERQLLIRQAHAALLQELRHEAPPEAADFLARELDV 151

Query: 199 SNDEDIETLISDIISNRTALK 219
               D E L    + +R   +
Sbjct: 152 QAFTDFEALAKQRLLHRDIAR 172


>gi|226365846|ref|YP_002783629.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
 gi|226244336|dbj|BAH54684.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
          Length = 1108

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 31/157 (19%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V    G+GKT +LV   +  +     P ++L LT +K AA     RV E +TA     DE
Sbjct: 62  VLGGPGTGKTSLLVDVAVDRIAGGEDPESVLVLTQSKRAAG----RVREEVTAALIGHDE 117

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                 T+                             V+T+H++  A+++          
Sbjct: 118 HHGPRATREPL--------------------------VRTVHSYAFAVLRLQAAAHGNPP 151

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
              +    +   ++ E  +  +A       E L+ A 
Sbjct: 152 -PRLITGAEQDAVLREMLQGDIADGGEMWPERLRPAL 187


>gi|20090715|ref|NP_616790.1| hypothetical protein MA1865 [Methanosarcina acetivorans C2A]
 gi|19915769|gb|AAM05270.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 157

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
            V A AGSGKT ++  ++  LL     P+  +  ++ T  A  E+  ++ +   A S L
Sbjct: 28 FVVKACAGSGKTCVVAAKISSLLKEWISPNRGIAAISFTNVAWQEIEDKLKKDFGADSGL 87


>gi|289626458|ref|ZP_06459412.1| hypothetical protein PsyrpaN_15177 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866384|gb|EGH01093.1| hypothetical protein PSYAE_03810 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 632

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 48/123 (39%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           P RS  + A AGSGKT  LV+ +  L     L  N     + C+T+T+ A  E+      
Sbjct: 24  PQRSFVMVAGAGSGKTTSLVKALAHLGQTRRLKLNMRGHRVACITYTEVAVKEI------ 77

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
               W  + ++ L                                   V TIH+F   ++
Sbjct: 78  ----WGDVGNDPL---------------------------------FHVSTIHSFLWTVI 100

Query: 145 QQF 147
           + F
Sbjct: 101 RPF 103


>gi|296390230|ref|ZP_06879705.1| putative helicase [Pseudomonas aeruginosa PAb1]
          Length = 651

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           T+ ++S    EQ       +    + A AGSGK+  LV RV+ +L      P  L  ++ 
Sbjct: 108 TLGVVSPPSEEQWAMILCRQPLARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISF 167

Query: 71  TKAAAA 76
           T A+ A
Sbjct: 168 TNASCA 173


>gi|262369875|ref|ZP_06063202.1| DNA helicase II [Acinetobacter johnsonii SH046]
 gi|262314914|gb|EEY95954.1| DNA helicase II [Acinetobacter johnsonii SH046]
          Length = 577

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 50/139 (35%)

Query: 16  LISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68
           L++  ++++ +  A D   S  + A AG+GKT+ LV  + RL+             + C+
Sbjct: 10  LVAAQEAQRKINQALDAGYSFRLEAGAGAGKTYSLVAALKRLIDERGSTLVQSGKKVACI 69

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T+T+ A  E+                                              +E  
Sbjct: 70  TYTEVARNEI-------------------------------------------AQEIEDH 86

Query: 129 GGLKVQTIHAFCEAIMQQF 147
             + V TIH FC A ++QF
Sbjct: 87  PAILVDTIHGFCWAFIRQF 105


>gi|313576853|gb|ADR67027.1| pathogenesis-related protein [Klebsiella pneumoniae subsp.
           pneumoniae]
          Length = 649

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 58/132 (43%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--------------TLLCLTHTKAAA 75
           P R+ ++ A AGSGKT  LV+ VLR L                     ++  +T+TK A 
Sbjct: 28  PPRNYFLFAGAGSGKTRTLVE-VLRRLTGVTEHEKGGQLARSLKMYGRSIRVVTYTKNAV 86

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           + ++ R+ +                                              + V T
Sbjct: 87  SVINGRLGD-------------------------------------------NSLVCVST 103

Query: 136 IHAFCEAIMQQF 147
           IH+FC  ++  F
Sbjct: 104 IHSFCWELINGF 115


>gi|294664140|ref|ZP_06729529.1| UvrD/REP helicase [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 10535]
 gi|292606085|gb|EFF49347.1| UvrD/REP helicase [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 10535]
          Length = 547

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82
             +    ++ V AN GSGKT +L QR   L        P  +L ++    AA  +  RV
Sbjct: 21 AAITAVHGNSMVIANPGSGKTELLAQRADFLFRTGTSRYPKKILAISFKTDAAHTLRRRV 80

Query: 83 LEI 85
           + 
Sbjct: 81 RDR 83


>gi|303327782|ref|ZP_07358222.1| DNA helicase [Desulfovibrio sp. 3_1_syn3]
 gi|302862143|gb|EFL85077.1| DNA helicase [Desulfovibrio sp. 3_1_syn3]
          Length = 633

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
               +  +S  AGSGKT+ LV+ + +++  N H   + C+T+T  A  +++ R+     
Sbjct: 4  IHTGHNFLLSGGAGSGKTYALVKVLEKVIEENPHIG-IACITYTNTAVDQITARISHDNL 62

Query: 88 AWSHLSD 94
            S + D
Sbjct: 63 RVSTIHD 69


>gi|21243000|ref|NP_642582.1| helicase IV [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108506|gb|AAM37118.1| helicase IV [Xanthomonas axonopodis pv. citri str. 306]
          Length = 939

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLC 67
           ++   ++    T  +   A     +  V A AGSGK+  +V ++   L +       +L 
Sbjct: 162 DYFNAVESSPLTPEQTAAALVFEDATLVVAAAGSGKSSCIVGKIGFALKSGLFQDHEILA 221

Query: 68  LTHTKAAAAEMSHRVLEIITAW 89
           L + K AA  +  R+ + ++  
Sbjct: 222 LAYNKKAAKSLDERLSKKLSKA 243


>gi|188591512|ref|YP_001796111.1| putative ATP-dependent DNA helicase [Cupriavidus taiwanensis]
 gi|170938907|emb|CAP63908.1| putative ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG
          19424]
          Length = 579

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75
          ++     Q    D  +     A  G+GKT  +  +   LL   A P  T+  +T +K AA
Sbjct: 7  LAVLNPAQREVVDLRQHCLAVAVPGAGKTATIAAKTAVLL---ADPHVTVGAVTFSKDAA 63

Query: 76 AEMSHRVLEIITAWSH 91
           E+  R+L +  + + 
Sbjct: 64 VELRERILALAGSATK 79


>gi|116688231|ref|YP_833854.1| hypothetical protein Bcen2424_0207 [Burkholderia cenocepacia
          HI2424]
 gi|116646320|gb|ABK06961.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 578

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--P---STLLCLTHTKAAAAEMSHR 81
          D  RS  + A AG+GKT+ L++ +  L+  N H  P     + C+T T  A  E++ R
Sbjct: 24 DEGRSFRLEAGAGAGKTYSLIKALQYLIERNRHGFPKKNQQIACITFTNVARDEIAAR 81


>gi|289661513|ref|ZP_06483094.1| UvrD/REP helicase [Xanthomonas campestris pv. vasculorum
          NCPPB702]
          Length = 547

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82
             +    ++ V AN GSGKT +L QR   +L       P  +L ++    AA  +  RV
Sbjct: 21 AAITAFHGNSMVIANPGSGKTELLAQRADFVLRTGTSRYPKKILAISFKTDAAHTLRRRV 80

Query: 83 LEI 85
           + 
Sbjct: 81 RDR 83


>gi|309810402|ref|ZP_07704236.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
 gi|308435642|gb|EFP59440.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
          Length = 1117

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 40/112 (35%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           +E    +    ++Q +     R   V    G+GKT + V+ V + +   A P   + L+ 
Sbjct: 55  TEAAAPLDLDPAQQAVLEADDRVLHVVGAPGTGKTTLAVELVAQAVEGGARPDECVLLSP 114

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           T+ AA  +  RV   +   S          +     +     D   A  LL 
Sbjct: 115 TRVAAGALRARVTTRVGGTSSEPIARTPQALAFGILRMRAAMDDLPAPRLLA 166


>gi|291302042|ref|YP_003513320.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571262|gb|ADD44227.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 1040

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          ++  +         V    G+GKT +LV+ V   +     P+ +L L  
Sbjct: 30 AQATVVEHRDGPLLVQGGPGTGKTAVLVESVAARVKEGVDPADMLVLGF 78


>gi|251798283|ref|YP_003013014.1| hypothetical protein Pjdr2_4306 [Paenibacillus sp. JDR-2]
 gi|247545909|gb|ACT02928.1| conserved hypothetical protein [Paenibacillus sp. JDR-2]
          Length = 576

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 80/227 (35%), Gaps = 36/227 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTK 72
           +Q   +  +     +S  + A AG+GKTH L+  + +++  +          + C+T+T 
Sbjct: 15  NQAMEKVSICIRDKKSFVLEAGAGAGKTHTLIHTLKQVVEVDGEIFVRNKQKIACITYTN 74

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A  E+  R       ++        + I   Q +  N   + +     +  ++      
Sbjct: 75  VAREEIESRTDHHPAIFTATIHAFCWSLIKDYQTRLRNHLYLLEKWPQRLEEIDNIASYI 134

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +                +  I     + D    K+++         +I++ ++ + +K F
Sbjct: 135 IS--------------YDLGIP---KVKD----KQIMLGHNDVISLTILMLDDLKFRKIF 173

Query: 193 YE-----ILEISNDED---IETLISDIISNRTALKLIFFFFSYLWRR 231
                   ++   D D   +E L +  + N    +L+   F   W++
Sbjct: 174 INRYPILFIDEYQDTDKHFVEALTTHFLDNEN--RLLLGLFGDPWQK 218


>gi|161522651|ref|YP_001585580.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|160346204|gb|ABX19288.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
          Length = 106

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAA 74
          ++ +   +Q   +   R     A  G+GKT +   +   LL     P+ ++  +T +K A
Sbjct: 1  MLDELNPQQREVALLRRHCLAIACPGAGKTKMSATKAAFLL---QDPTAVVGAVTFSKDA 57

Query: 75 AAEMSHRVLEIITAWSH 91
          A E+  R+L +  A + 
Sbjct: 58 AVELRERILALAPADAK 74


>gi|169831826|ref|YP_001717808.1| UvrD/REP helicase family protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638670|gb|ACA60176.1| UvrD/REP helicase family protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 212

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 37  SANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            A   +GKT +L QR   LL       P  +L ++  + AA  +  RV +     +   D
Sbjct: 2   VAGPEAGKTELLAQRACYLLETGLCPTPRRILAISFKRDAAKNLGERVQKRCGDRARRFD 61

Query: 95  EILSAEITK 103
                +  K
Sbjct: 62  SFTLDKFAK 70


>gi|119491302|ref|ZP_01623356.1| hypothetical protein L8106_21934 [Lyngbya sp. PCC 8106]
 gi|119453466|gb|EAW34628.1| hypothetical protein L8106_21934 [Lyngbya sp. PCC 8106]
          Length = 795

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 47/139 (33%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQ-------RVLRLLLANAHPSTLLCLTHTKAAA 75
           +Q +A        VSA  G+GK+  +         R   L   N H   L+ +T T+AAA
Sbjct: 55  QQQMADWEGGPLAVSAVPGAGKSTGMASAAAIAIARY-HL---NTH-RQLVVVTFTRAAA 109

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           A +  ++ E +                                          GG  V T
Sbjct: 110 ANIRSKINEQLKNLGLP-----------------------------------MGGFLVYT 134

Query: 136 IHAFCEAIMQQFPLEANIT 154
           +HA    I +Q P  + + 
Sbjct: 135 LHALALNIARQHPELSGLD 153


>gi|187921120|ref|YP_001890152.1| hypothetical protein Bphyt_6475 [Burkholderia phytofirmans PsJN]
 gi|187719558|gb|ACD20781.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 628

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 48/144 (33%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLT 69
           D  +  +  + L   P RS  + A AGSGKT  LV+ +  L ++           + C+T
Sbjct: 9   DTPADIEVRECLDEQPARSFVMVAGAGSGKTTSLVKALQHLAVSRGAMLRRAGQQIACIT 68

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           +T+ A AE+S  V                                               
Sbjct: 69  YTEVAVAEISGDVG-------------------------------------------NAS 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEANI 153
              V TIH+F   +++ F  +  +
Sbjct: 86  TFHVSTIHSFLWLLVRSFQADIKL 109


>gi|213582889|ref|ZP_03364715.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 149

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           I+      S+     +   S  V A AGSGKT +LV R   LL   
Sbjct: 98  IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARG 143


>gi|86159691|ref|YP_466476.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776202|gb|ABC83039.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 607

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
          EQ    +      V A  GSGKT ++ + +   +    A  + +  L+ T  A  E+  
Sbjct: 9  EQRAVVERRGRFTVRACPGSGKTFVVARLLAHRIREWKARHAGIAALSFTNVACEEVRR 67


>gi|294668059|ref|ZP_06733179.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292601874|gb|EFF45701.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1268

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN--------ITSHFAIADEEQSKKLI 169
           R  L   +E      V TIH FC  ++++  LE+         + +   +  E  +    
Sbjct: 12  RRRLQQAVEEIDLAAVFTIHGFCARVLREHALESGQAFAAPELLANDRELLGEVAADLWR 71

Query: 170 EEAKKSTLAS----IMLDNNEELKKAFYEILEI 198
           + A  + +A     +     E L      ++  
Sbjct: 72  QRAADAVMAEDLIALWSGGPEALASDLRALVRH 104


>gi|220909979|ref|YP_002485290.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219866590|gb|ACL46929.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 776

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 41/171 (23%)

Query: 14  IDLISQTKS--EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLT 69
           +D + QT    ++ LA   + S  +SA  G+GK++ +       +  N       LL +T
Sbjct: 13  LDTLRQTLRPGQRELADWQSGSLAISAVPGAGKSYGMAVAAAIAVAQNQLGRNRQLLVVT 72

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T++AAA +  R+ E +                                          G
Sbjct: 73  FTRSAAANIKSRIREHLRLLGLPQ-----------------------------------G 97

Query: 130 GLKVQTIHAFCEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179
           G  V T+H    AI +Q    + +      +    Q  +LI       +A+
Sbjct: 98  GFAVFTLHGLALAIARQ-SQFSGLDLEQATLISPYQGHRLIRTCVDQWIAA 147


>gi|116052680|ref|YP_792996.1| hypothetical protein PA14_60080 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587901|gb|ABJ13916.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 643

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 66/210 (31%)

Query: 10  HSETIDLISQTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-----AH 61
            S  ID        ++ A   + P +   V A AGSGKT  L++ +  ++  +     A 
Sbjct: 1   MSRRIDSPDTDADREIHACIVATPPQPFVVRAGAGSGKTTSLIKALDWVISEHGASMRAR 60

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
              + C+T+T  A  E+           + ++D+ L                        
Sbjct: 61  KQKVACITYTDLATNEI----------LADVNDDPL------------------------ 86

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                    + V TIH+F  +I + F  +  +              L  + ++    S +
Sbjct: 87  ---------VHVSTIHSFYWSIAKTFQADIKV-------------WLQNDIRRRI--SEL 122

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDI 211
            +  E       +     N  D E  +  +
Sbjct: 123 EEEFENYSSRVRQTTRDRNKADQERYVRSL 152


>gi|183600188|ref|ZP_02961681.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC
          25827]
 gi|188022485|gb|EDU60525.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC
          25827]
          Length = 630

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP--STLLCLTHTKA 73
           I   +     A     S  + A  G+GKT  L Q+   LL     P    +L ++    
Sbjct: 13 GIDDLEPNAWQALRQRESTSIIAGPGAGKTEFLAQKAAYLLETGLCPPNKKILAISFKTD 72

Query: 74 AAAEMSHRVLEI 85
          AA  ++ RV E 
Sbjct: 73 AAKNLADRVKER 84


>gi|167760228|ref|ZP_02432355.1| hypothetical protein CLOSCI_02601 [Clostridium scindens ATCC 35704]
 gi|167662111|gb|EDS06241.1| hypothetical protein CLOSCI_02601 [Clostridium scindens ATCC 35704]
          Length = 581

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 55/154 (35%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTHTKAA 74
             + + A     S  V A AGSGKT+ L  + +  + AN          T++C+T+T AA
Sbjct: 21  DEQIISALQDGISFRVEAGAGSGKTYSL-NKAIEWIQANKWTEYRRKKQTVVCITYTNAA 79

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
              ++ R+ +                                                  
Sbjct: 80  VDVIAERLSKDSFILP-------------------------------------------S 96

Query: 135 TIHAFCEAIMQQF-PLEANI---TSHFAIADEEQ 164
           TIH+F    ++Q+     +I      F + DE  
Sbjct: 97  TIHSFAWNAIKQYQSFLIDIVTSDPDF-LPDEGD 129


>gi|167851544|ref|ZP_02477052.1| predicted DNA helicase [Burkholderia pseudomallei B7210]
          Length = 577

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 42/152 (27%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMS 79
           ++    D      V+   GSGKT I LV+   +L++        ++L L+ ++AA A   
Sbjct: 8   QRQSILDEGGPILVTGGPGSGKTTIALVK--AKLVIERGLSAGQSVLFLSFSRAAVA--- 62

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV+E                 +K+Q  KP +                   L VQT H++
Sbjct: 63  -RVIEA----------------SKVQLPKPLQ-----------------SKLSVQTFHSY 88

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
              I+Q +           +        L  E
Sbjct: 89  FWHILQAYGYLLGAPRSLKLLMPHDEAALRHE 120


>gi|330817364|ref|YP_004361069.1| predicted DNA helicase [Burkholderia gladioli BSR3]
 gi|327369757|gb|AEA61113.1| predicted DNA helicase [Burkholderia gladioli BSR3]
          Length = 577

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 46/203 (22%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP-STLLCLTHTKAAAAEMS 79
           +++    D   +  V+   GSGKT  +     RL++     P  ++L L+ +        
Sbjct: 7   AQRQSILDENGAILVTGGPGSGKT-TIALAKARLVIERGLSPGQSVLFLSFS-------- 57

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                                      +         ++  L T L+  G L +QT H+ 
Sbjct: 58  ---------------------------RAAVARVAEASKTQLPTALQ--GKLSIQTFHSL 88

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
              I+Q +           +          E A +    S   D N E ++ F E   ++
Sbjct: 89  FWRILQAYGYLLGAPRSLRLLMPHD-----EAAMRHEFESNGGDWNVERERLFRETGRVA 143

Query: 200 NDEDIETLISDIISNRTALKLIF 222
            D        +++S    L+ +F
Sbjct: 144 FDL-FAPKAHELLSRSARLRELF 165


>gi|227501773|ref|ZP_03931822.1| conserved hypothetical protein [Corynebacterium accolens ATCC
          49725]
 gi|227077798|gb|EEI15761.1| conserved hypothetical protein [Corynebacterium accolens ATCC
          49725]
          Length = 118

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
          +  T S++ L    +   +  A  G+GKT  +V+R  R   +         +T T AAA 
Sbjct: 3  LEFTSSQKSLIESESGGFF-EACPGAGKTQTIVERFARRADSEDSRCGTALVTFTNAAAE 61

Query: 77 EMSHR 81
          E+  R
Sbjct: 62 EVQRR 66


>gi|215483863|ref|YP_002326088.1| UvrD/REP helicase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|213986919|gb|ACJ57218.1| UvrD/REP helicase family protein [Acinetobacter baumannii
           AB307-0294]
          Length = 697

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 45/111 (40%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D  R+  +   AGSGKT  L + V+  +  +     + C+THT  A  E+  R+      
Sbjct: 23  DGFRNFVLQGGAGSGKTESLKE-VIEFISNSYPNQKIACITHTNIAVDEIRSRIKN---- 77

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                                                     L V TIH+F
Sbjct: 78  ----------------------------------------ANLWVSTIHSF 88


>gi|213423369|ref|ZP_03356357.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
          Length = 96

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85
           + A+AG+GKT  +    LRLLL                LL +T T+AA  E+  R+   
Sbjct: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSN 79

Query: 86 ITAW 89
          I   
Sbjct: 80 IHEL 83


>gi|302869751|ref|YP_003838388.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572610|gb|ADL48812.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1240

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 39/165 (23%)

Query: 48  LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK 107
           LV+ V   +     P  +L LT  +  A E+ HR+   I    H                
Sbjct: 136 LVEAVAARVAEGVDPERILVLTFGRRGATELRHRIEARIAEGGH---------------- 179

Query: 108 KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167
                           ++  P    V+T  A+   ++++   E        +    +   
Sbjct: 180 ---------------RVIREPL---VRTFPAYAFGLLRRAAAERG-EPSPRLLTGPEQDL 220

Query: 168 LIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +I E     L  +  +  ++      ++            + D++
Sbjct: 221 IIRE----LLDVVGEEPGDDPVGWPEDLRPALRTRAFAQQLRDLL 261


>gi|118367232|ref|XP_001016831.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89298598|gb|EAR96586.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 816

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           S T  +      P  R   V+A AGSGKT   +Q +   +     P  +   T    A+
Sbjct: 17 FSLTDEQLKFILAPKNRDIKVTACAGSGKTECALQFIKSAIDEGQDPRNICITTFNIQAS 76

Query: 76 AEMSHRVLEIITAWSHLSDEILS 98
           +M  R ++++   +    EI++
Sbjct: 77 VDMKKRAIQLLGKKNANKIEIIN 99


>gi|218550117|ref|YP_002383908.1| helicase [Escherichia fergusonii ATCC 35469]
 gi|218357658|emb|CAQ90299.1| putative helicase [Escherichia fergusonii ATCC 35469]
          Length = 594

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 23/143 (16%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59
           M + NS Q     +D I     E  +AS    S ++ A  GSGKT ++  +V + +    
Sbjct: 9   MTHFNSQQ-----MDYI-----ESSIAS----SIYLEACPGSGKTEVIAAKVAKEINNWT 54

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLE-------IITAWSHLSDEILSAEITKIQGKKPNKS 112
             PS +  L+ + +A  E+  RV +           +    D  +   +     K     
Sbjct: 55  LSPSGIALLSFSNSATDELFSRVKKYSPDTVSRFPHFIGTFDSFIFKFLIGPNAKCLTHF 114

Query: 113 DMSKARHLLITILETPGGLKVQT 135
           +    ++ L  I+E+   L +QT
Sbjct: 115 EGECNKNTL-RIIESASPLFIQT 136


>gi|307207792|gb|EFN85410.1| Putative helicase MOV-10 [Harpegnathos saltator]
          Length = 488

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 12 ETIDLISQTKSEQLLA-------SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
          + ID       EQ+ A       +       +    G+GKT  LV+ + +++  +     
Sbjct: 2  DWIDTNVSKNEEQMQAVINILHKTACPAPYIIFGPPGTGKTATLVEAICQIVKQDPT-KH 60

Query: 65 LLCLTHTKAAAAEMSHRVLEIITA 88
          +L  T + AAA E++ R+L  + A
Sbjct: 61 ILVCTSSNAAADEITSRLLRHLPA 84


>gi|107100841|ref|ZP_01364759.1| hypothetical protein PaerPA_01001870 [Pseudomonas aeruginosa PACS2]
          Length = 651

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 13  TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70
           T+ ++S    EQ       +    + A AGSGK+  LV RV+ +L      P  L  ++ 
Sbjct: 108 TLGVVSPPSEEQWAMILCRQPLARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISF 167

Query: 71  TKAAA 75
           T A+ 
Sbjct: 168 TNASC 172


>gi|120609346|ref|YP_969024.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120587810|gb|ABM31250.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 665

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               ++ + +   ++  ++A AG+GKT  L  +   L+  +     +L L ++ A  A +
Sbjct: 16  PNDEQKAVLNTTAKTVLINALAGTGKTTTLATKAADLVQMHGA-RRVLMLAYSDAGLAAL 74

Query: 79  SHRVLEIITAWSH----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
             R+   + A +     ++ E L A + K QG   N       R LLI     
Sbjct: 75  RDRLGRYMPADAREVRIMTVEQLCAGLLKAQGLPVNALTEPLERQLLIRQAHA 127


>gi|260188245|ref|ZP_05765719.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289448885|ref|ZP_06438629.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289421843|gb|EFD19044.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
          Length = 1055

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 36/194 (18%)

Query: 23  EQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           E   A  P       V    G+GK+ +LV+  +  + A   P ++L LT           
Sbjct: 8   EAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLT----------- 56

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                      +     SA  T +   + N    +  R  +           V+T+H++ 
Sbjct: 57  -------GSGRMGMRARSALTTALLRSRTNGPCRAAIREPV-----------VRTVHSYA 98

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            A++++    A   +   +    +   +I E     LA    D           +     
Sbjct: 99  YAVLRKAAQRAG-DALPRLLTSAEQDAIIRE----LLAGDAEDGPAATTTWPAHLRPALT 153

Query: 201 DEDIETLISDIISN 214
                T + ++++ 
Sbjct: 154 TAGFATELRNLLAR 167


>gi|215413075|ref|ZP_03421776.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|294993861|ref|ZP_06799552.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210]
 gi|298526679|ref|ZP_07014088.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496473|gb|EFI31767.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902571|gb|EGE49504.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148]
          Length = 1055

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 36/194 (18%)

Query: 23  EQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           E   A  P       V    G+GK+ +LV+  +  + A   P ++L LT           
Sbjct: 8   EAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLT----------- 56

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                      +     SA  T +   + N    +  R  +           V+T+H++ 
Sbjct: 57  -------GSGRMGMRARSALTTALLRSRTNGPCRAAIREPV-----------VRTVHSYA 98

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            A++++    A   +   +    +   +I E     LA    D           +     
Sbjct: 99  YAVLRKAAQRAG-DALPRLLTSAEQDAIIRE----LLAGDAEDGPAATTTWPAHLRPALT 153

Query: 201 DEDIETLISDIISN 214
                T + ++++ 
Sbjct: 154 TAGFATELRNLLAR 167


>gi|159186465|ref|NP_395961.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159141525|gb|AAK90402.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 566

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRL---LLANAHPSTLLCLTHTKAA 74
          P     VSA AGSGKT   V RV  +   L        +L L+ +  A
Sbjct: 4  PAEPFVVSACAGSGKTKTAVHRVAAMQNRLTD--RIGRILLLSFSNVA 49


>gi|15610338|ref|NP_217718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv]
 gi|15842788|ref|NP_337825.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551]
 gi|148663061|ref|YP_001284584.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148824398|ref|YP_001289152.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11]
 gi|167968317|ref|ZP_02550594.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           H37Ra]
 gi|253800238|ref|YP_003033239.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254233813|ref|ZP_04927138.1| hypothetical protein TBCG_03137 [Mycobacterium tuberculosis C]
 gi|254365825|ref|ZP_04981870.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254552299|ref|ZP_05142746.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|297635849|ref|ZP_06953629.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297732845|ref|ZP_06961963.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506]
 gi|306777524|ref|ZP_07415861.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|306786069|ref|ZP_07424391.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|306790436|ref|ZP_07428758.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|306794957|ref|ZP_07433259.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|306805002|ref|ZP_07441670.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu008]
 gi|306969292|ref|ZP_07481953.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|306973643|ref|ZP_07486304.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|307081352|ref|ZP_07490522.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|313660178|ref|ZP_07817058.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475]
 gi|3242281|emb|CAA16669.1| POSSIBLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis
           H37Rv]
 gi|13883114|gb|AAK47639.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551]
 gi|124599342|gb|EAY58446.1| hypothetical protein TBCG_03137 [Mycobacterium tuberculosis C]
 gi|134151338|gb|EBA43383.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148507213|gb|ABQ75022.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148722925|gb|ABR07550.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           F11]
 gi|253321741|gb|ACT26344.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|308214072|gb|EFO73471.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308329222|gb|EFP18073.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308333054|gb|EFP21905.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308336740|gb|EFP25591.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|308348311|gb|EFP37162.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu008]
 gi|308353145|gb|EFP41996.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|308356887|gb|EFP45738.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308360887|gb|EFP49738.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|323718066|gb|EGB27248.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A]
 gi|328459973|gb|AEB05396.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
          Length = 1055

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 36/194 (18%)

Query: 23  EQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           E   A  P       V    G+GK+ +LV+  +  + A   P ++L LT           
Sbjct: 8   EAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLT----------- 56

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                      +     SA  T +   + N    +  R  +           V+T+H++ 
Sbjct: 57  -------GSGRMGMRARSALTTALLRSRTNGPCRAAIREPV-----------VRTVHSYA 98

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            A++++    A   +   +    +   +I E     LA    D           +     
Sbjct: 99  YAVLRKAAQRAG-DALPRLLTSAEQDAIIRE----LLAGDAEDGPAATTTWPAHLRPALT 153

Query: 201 DEDIETLISDIISN 214
                T + ++++ 
Sbjct: 154 TAGFATELRNLLAR 167


>gi|256831951|ref|YP_003160678.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
 gi|256685482|gb|ACV08375.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
          Length = 1059

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  ++   L A + T +  V   A GSGKTH +V+ V   +        +L L  T+  A
Sbjct: 7   LDPSQRAFLDAYENTNNNLVLVGAPGSGKTHTMVELVRHAVHRGVSTERVLVLAATRHLA 66

Query: 76  AEMSHRVLEII---------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           + +  R+ ++I              L+  +LSA         P      +  HLL  IL
Sbjct: 67  SVLRTRITQVIDVPVRGAIARTAPALAYSLLSAHAAAQSQPLPRLITGPEQDHLLAQIL 125


>gi|31794379|ref|NP_856872.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97]
 gi|121639087|ref|YP_979311.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215432161|ref|ZP_03430080.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054]
 gi|219559254|ref|ZP_03538330.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
 gi|224991579|ref|YP_002646268.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260202355|ref|ZP_05769846.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289444773|ref|ZP_06434517.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289571424|ref|ZP_06451651.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
 gi|289755321|ref|ZP_06514699.1| UvrD/Rep family helicase [Mycobacterium tuberculosis EAS054]
 gi|31619975|emb|CAD95319.1| POSSIBLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97]
 gi|121494735|emb|CAL73216.1| Possible ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774694|dbj|BAH27500.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289417692|gb|EFD14932.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289545178|gb|EFD48826.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
 gi|289695908|gb|EFD63337.1| UvrD/Rep family helicase [Mycobacterium tuberculosis EAS054]
          Length = 1055

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 36/194 (18%)

Query: 23  EQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           E   A  P       V    G+GK+ +LV+  +  + A   P ++L LT           
Sbjct: 8   EAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLT----------- 56

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                      +     SA  T +   + N    +  R  +           V+T+H++ 
Sbjct: 57  -------GSGRMGMRARSALTTALLRSRTNGPCRAAIREPV-----------VRTVHSYA 98

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            A++++    A   +   +    +   +I E     LA    D           +     
Sbjct: 99  YAVLRKAAQRAG-DALPRLLTSAEQDAIIRE----LLAGDAEDGPAATTTWPAHLRPALT 153

Query: 201 DEDIETLISDIISN 214
                T + ++++ 
Sbjct: 154 TAGFATELRNLLAR 167


>gi|168006903|ref|XP_001756148.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692658|gb|EDQ79014.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 699

 Score = 50.3 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 52/158 (32%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ ++ E  L SD  +   + A  GSGK                    +L +T T AAA 
Sbjct: 5   LNDSQREAAL-SDTLKPLLILAGPGSGK--------------GIEAKCILAMTFTTAAAT 49

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           EM  RV       +  + + +S E+T                              + T 
Sbjct: 50  EMRQRV-------AVATGKAISKELT------------------------------ISTF 72

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
           H+FC  + +    +   ++ F +    Q ++ + EA +
Sbjct: 73  HSFCLQLCRAHVDKLGRSAEFLVYGHGQQRRAVIEATR 110


>gi|55378952|ref|YP_136802.1| repair helicase [Haloarcula marismortui ATCC 43049]
 gi|55231677|gb|AAV47096.1| repair helicase [Haloarcula marismortui ATCC 43049]
          Length = 613

 Score = 50.3 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+ RV  LL  +      +L +++T+AAAAE+  R+ + +     LS   L
Sbjct: 14  GPGSGKTTALLDRVDELLEDDDVDFRDVLVVSYTRAAAAEIRERLADRLG----LSPRAL 69

Query: 98  SAEITKIQGKKPNKSDMSK 116
              +  +  K     ++S+
Sbjct: 70  RGNVCTMHAKAYELLNLSR 88


>gi|315503767|ref|YP_004082654.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410386|gb|ADU08503.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1250

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 39/165 (23%)

Query: 48  LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK 107
           LV+ V   +     P  +L LT  +  A E+ HR+   I    H                
Sbjct: 156 LVEAVAARVAEGVDPERILVLTFGRRGATELRHRIEARIAEGGH---------------- 199

Query: 108 KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167
                           ++  P    V+T  A+   ++++   E        +    +   
Sbjct: 200 ---------------RVIREPL---VRTFPAYAFGLLRRAAAERG-EPSPRLLTGPEQDL 240

Query: 168 LIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +I E     L  +  +  ++      ++            + D++
Sbjct: 241 IIRE----LLDVVGEEPGDDPVGWPEDLRPALRTRAFAQQLRDLL 281


>gi|239501315|ref|ZP_04660625.1| UvrD/REP helicase [Acinetobacter baumannii AB900]
          Length = 552

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 43/169 (25%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
           D +    +      +  R   ++A  G+GKT +L Q+   LL  N  A+P  +L ++   
Sbjct: 11  DGLILEPNALRATKELERCLALTAGPGAGKTEMLAQKADFLLRTNSCAYPKRILAISFKV 70

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            A+  +  RV                                           +      
Sbjct: 71  DASKNLKERVHRRCGT-------------------------------------DLASRFD 93

Query: 133 VQTIHAFCEAIMQQF-PLEAN---ITSHFAIADEEQSKKLIEEAKKSTL 177
             T HAF + I+ +F P+      + + + I++    +   + + +  +
Sbjct: 94  SYTFHAFAKRIIDRFRPVLTGEDTLEADYKISERRNGRSHNQISYEDLV 142


>gi|120611845|ref|YP_971523.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120590309|gb|ABM33749.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 603

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 44/211 (20%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
              +Q    + +    V+   GSGKT I + +   + +A      +L L+  +A  +   
Sbjct: 3   LTDKQKDVLETSGHLLVTGGPGSGKTTISILKAAEVAVAARPGQEILFLSFARATIS--- 59

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV+E I                       N+ D+ +              + V+T H+F
Sbjct: 60  -RVMEAIE----------------------NEHDIPR---------HIRARITVETYHSF 87

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK---AFYEIL 196
              I++       +    +I         +   ++    +  L + E  +K      E L
Sbjct: 88  FWRILKTHGYLLGLPRKLSILTPANEAIALSTIRREYKPASKLTDEERSQKKGRESKERL 147

Query: 197 EISNDED------IETLISDIISNRTALKLI 221
            ++ ++         +L++ ++S    L+ +
Sbjct: 148 RLATEDGRVCFDLFASLVARLLSRSERLRKL 178


>gi|88856785|ref|ZP_01131439.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
 gi|88813953|gb|EAR23821.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
          Length = 1033

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 1/104 (0%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77
                 ++  D   SA V    GSGKT  LV+ V   +      P  ++ L+ T+ +A  
Sbjct: 20  DDSQRVVVELDEGVSAIVVGAPGSGKTETLVEVVAERVHSRGWSPEQIVVLSATRQSATA 79

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           +  R+   I A +       +  +     ++        A  LL
Sbjct: 80  LRDRLASRIDAPTLGPMARTANSLAFEVIREAAAVAGDGAPTLL 123


>gi|197335583|ref|YP_002155788.1| UvrD/REP helicase, putative [Vibrio fischeri MJ11]
 gi|197317073|gb|ACH66520.1| UvrD/REP helicase, putative [Vibrio fischeri MJ11]
          Length = 585

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
          SE +D I+ +  E           ++ A  GSGKT ++  +V + + +   +P     L+
Sbjct: 7  SEQLDYINSSIEE---------HIFLEACPGSGKTEVVATKVAKEIDSWKKNPGGFAALS 57

Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILS 98
             +A  E++ RV + +     +    L 
Sbjct: 58 FANSATDELTSRVSKHLPNGREMFPHFLG 86


>gi|153870874|ref|ZP_02000180.1| exodeoxyribonuclease V beta subunit [Beggiatoa sp. PS]
 gi|152072657|gb|EDN69817.1| exodeoxyribonuclease V beta subunit [Beggiatoa sp. PS]
          Length = 455

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
           D   A   L   L       + TIH+FC  ++Q    E+ +     +        L+ E 
Sbjct: 26  DHQLAIFRLTNALRGFDEASIFTIHSFCRQMLQDNAFESGLLFDTELV--SDQSHLLREI 83

Query: 173 KKSTLASIML 182
            +        
Sbjct: 84  VEDFWRQYFY 93


>gi|313156950|gb|EFR56383.1| UvrD/REP helicase [Alistipes sp. HGB5]
          Length = 634

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 18/195 (9%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87
           D + S ++ A  G+GKT ++  +    +            ++ T  AA E+  R+ +   
Sbjct: 37  DISHSCYLEACPGAGKTEVIGLKSAYEIRTWKEVFCGFCIISFTNKAAGEIKSRIEKYAG 96

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI---- 143
             +      +    + I          S  ++  ++I+E         ++A+C       
Sbjct: 97  NRASSHPHFIGTLDSWIYNYIFIPFCTSDVQNHKVSIIEVGSNANF--LNAYCCKTGYIT 154

Query: 144 -MQQFPLEAN------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDN----NEELKKAF 192
             +  P+ AN      I+  F I  +     L +        +   D     N+++ ++F
Sbjct: 155 ATRTIPIFANKYYFDCISQDFVIIIDRAKVSLSDYLNSDAFRAYRADKDWLTNKKVYESF 214

Query: 193 YEILEISNDEDIETL 207
            +     N++   T 
Sbjct: 215 MKTKNAFNEKGFFTF 229


>gi|261350273|ref|ZP_05975690.1| helicase IV [Methanobrevibacter smithii DSM 2374]
 gi|288861057|gb|EFC93355.1| helicase IV [Methanobrevibacter smithii DSM 2374]
          Length = 858

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 46/137 (33%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70
           +  +  S  + +++          + A AG+GKTH L+ +   L+   N  P  +L L+ 
Sbjct: 26  DNFEGKSLDEQQRIACILNDCDLEIIAGAGTGKTHTLLAKAEYLIEKKNISPDDILFLSF 85

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           +K+   E+  ++   +                                            
Sbjct: 86  SKSCVEELIEKLNYNVPT------------------------------------------ 103

Query: 131 LKVQTIHAFCEAIMQQF 147
               TIH+F  +++ ++
Sbjct: 104 ---STIHSFGLSLINEY 117


>gi|215405209|ref|ZP_03417390.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
           02_1987]
 gi|289747016|ref|ZP_06506394.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289687544|gb|EFD55032.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
          Length = 522

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 36/194 (18%)

Query: 23  EQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           E   A  P       V    G+GK+ +LV+  +  + A   P ++L LT           
Sbjct: 8   EAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLT----------- 56

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                      +     SA  T +   + N    +  R  +           V+T+H++ 
Sbjct: 57  -------GSGRMGMRARSALTTALLRSRTNGPCRAAIREPV-----------VRTVHSYA 98

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            A++++    A   +   +    +   +I E     LA    D           +     
Sbjct: 99  YAVLRKAAQRAG-DALPRLLTSAEQDAIIRE----LLAGDAEDGPAATTTWPAHLRPALT 153

Query: 201 DEDIETLISDIISN 214
                T + ++++ 
Sbjct: 154 TAGFATELRNLLAR 167


>gi|126454559|ref|YP_001068109.1| hypothetical protein BURPS1106A_3888 [Burkholderia pseudomallei
           1106a]
 gi|242315817|ref|ZP_04814833.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|126228201|gb|ABN91741.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a]
 gi|242139056|gb|EES25458.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
          Length = 631

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 48/142 (33%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLT 69
           D  +  +    L   P RS  + A AGSGKT  LV+ +  L              + C+T
Sbjct: 9   DTPADLELRACLDERPQRSFVMVAGAGSGKTTSLVKALTHLAQTRRRELKMRGQRIACIT 68

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           +T+ A  E+S  V +                                            G
Sbjct: 69  YTEVATKEISGDVGD-------------------------------------------DG 85

Query: 130 GLKVQTIHAFCEAIMQQFPLEA 151
              V TIH+F  ++++ F ++ 
Sbjct: 86  LFHVSTIHSFMWSVVRPFQIDL 107


>gi|209523619|ref|ZP_03272173.1| UvrD/REP helicase [Arthrospira maxima CS-328]
 gi|209496024|gb|EDZ96325.1| UvrD/REP helicase [Arthrospira maxima CS-328]
          Length = 801

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 49/192 (25%)

Query: 31  TRSAWVSANAGSGK-THILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
                VSA  G+GK T +     L +     +P   L+ +T T+AAA+ +  ++ + +  
Sbjct: 61  GGPLAVSAVPGAGKSTGMAAAAALAIARHQLNPQRQLIVVTFTRAAASNIRAKIRQHLNN 120

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
            S                                     P G  V T+H     I    P
Sbjct: 121 LSIP-----------------------------------PVGFVVNTLHGLALYIATSHP 145

Query: 149 LEANIT-SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
             + +   +F +     S +LI    +  +      +N  L +   E  +  ++E     
Sbjct: 146 ELSGLDLDNFTLVVPTSSHRLIRACVEQWIT-----HNPRLYETLIEGCQFDSEE----- 195

Query: 208 ISDIISNRTALK 219
            ++ +  R+ L+
Sbjct: 196 -TEKLRRRSVLR 206


>gi|160899213|ref|YP_001564795.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
 gi|160364797|gb|ABX36410.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
          Length = 689

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + +Q + +   RSA V+A AG GKT  L  +V++   +      +L L ++++  A   H
Sbjct: 50  REQQAILAHEGRSAIVAALAGVGKTTTLACKVVQACRSG-QAQRILVLAYSRSGVAAFHH 108

Query: 81  RVLEIITAWSHLSD--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           R+ +++           +      +I+ + P    ++    L   + E    L       
Sbjct: 109 RLKQLVREVPPQVQITTVERWAAQQIRRRDPAARFLADRVALQARVREAHAAL------- 161

Query: 139 FCEAI 143
            CE +
Sbjct: 162 -CERL 165


>gi|213160876|ref|ZP_03346586.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 236

 Score = 49.5 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           I+      S+     +   S  V A AGSGKT +LV R   LL  
Sbjct: 192 IESSPLNPSQARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLAR 236


>gi|118374210|ref|XP_001020295.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89302062|gb|EAS00050.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 745

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + ++ + +   R   V+A AGSGKT  ++  V   +     PS +   T    A+ +M  
Sbjct: 16  QQKEFIYASKRRDIKVTACAGSGKTQCVLMYVKEAIDEGFDPSAICITTFNIQASNDMKK 75

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           R +++I      +D+I    I K+  K  N    +K + 
Sbjct: 76  RAVQLIGK--DKADKIEITNIDKLITKLFNSIQRAKKQK 112


>gi|255326995|ref|ZP_05368071.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296212|gb|EET75553.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 1292

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 40 AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           G+GKTH L +R LR L     P+ LL L  T+ AA  M   +
Sbjct: 10 PGTGKTHHLTERALRYLADGNDPARLLILAPTRTAATRMRDTI 52


>gi|37523211|ref|NP_926588.1| hypothetical protein gll3642 [Gloeobacter violaceus PCC 7421]
 gi|35214214|dbj|BAC91583.1| gll3642 [Gloeobacter violaceus PCC 7421]
          Length = 713

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 38/145 (26%)

Query: 36  VSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           +SA  GSGKT  L   +  L +     P  +   T  +++ A ++ R+   +        
Sbjct: 25  ISAVPGSGKTFTLEALIAELVIRRGVPPERIGVFTFMRSSRANLTGRINRQLWEGGVA-- 82

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                             G L+  T+H+    ++Q F  +  + 
Sbjct: 83  ----------------------------------GRLEAFTLHSLALKVLQHFQGQLGLA 108

Query: 155 SHFAIADEEQSKKLIEEAKKSTLAS 179
           +   + +  + ++ I    ++ L +
Sbjct: 109 A-IDVLEGYEQERFISRLTQAWLRN 132


>gi|269102933|ref|ZP_06155630.1| ATP-dependent DNA helicase PcrA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162831|gb|EEZ41327.1| ATP-dependent DNA helicase PcrA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 774

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 45/160 (28%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            T  +         +A   A AG+GKT  LV  +   L      + +L L         M
Sbjct: 4   FTPEQIAFIHHEQGNALCVAGAGTGKTTTLVGLIQHKLAQ-IPANNMLVL---------M 53

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            +R             +I +    K+QG    +                     V T H+
Sbjct: 54  FNR-------------DIRNDFKQKLQGIGIEQQVP------------------VHTFHS 82

Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKST 176
           FC  +++   +  E      F   + +  K L ++  +  
Sbjct: 83  FCYQLLRHTGYLRETGYQVDFQQGESD--KTLAKQVLRQM 120


>gi|260495042|ref|ZP_05815171.1| UvrD/REP helicase [Fusobacterium sp. 3_1_33]
 gi|260197485|gb|EEW95003.1| UvrD/REP helicase [Fusobacterium sp. 3_1_33]
          Length = 633

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 47/129 (36%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
            L   +   +  +   AGSGKT+     +L   L    P   ++C+T+T  A AE+  R+
Sbjct: 13  ALQCIEKGENFILEGGAGSGKTY--SLILLIETLIIKLPEIKIVCITYTNNAVAEIKSRI 70

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
                                                           L V TIH F   
Sbjct: 71  --------------------------------------------DNENLWVSTIHEFIWY 86

Query: 143 IMQQFPLEA 151
           I++++  E 
Sbjct: 87  IIKKYQKEI 95


>gi|213965953|ref|ZP_03394143.1| UvrD/Rep helicase [Corynebacterium amycolatum SK46]
 gi|213951367|gb|EEB62759.1| UvrD/Rep helicase [Corynebacterium amycolatum SK46]
          Length = 781

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 22  SEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           S++  A  D   SA V   AG+GKT +LV R  + L      S++L  T T+  A ++ 
Sbjct: 304 SQRKAAFGDHKGSARVVGGAGTGKTVVLVHR-AKYLAEKYPGSSILLTTFTRGLANQLK 361


>gi|215447499|ref|ZP_03434251.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
           T85]
 gi|289759338|ref|ZP_06518716.1| hypothetical protein TBEG_02335 [Mycobacterium tuberculosis T85]
 gi|289714902|gb|EFD78914.1| hypothetical protein TBEG_02335 [Mycobacterium tuberculosis T85]
          Length = 240

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 36/194 (18%)

Query: 23  EQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           E   A  P       V    G+GK+ +LV+  +  + A   P ++L LT           
Sbjct: 8   EAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLT----------- 56

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                      +     SA  T +   + N    +  R  +           V+T+H++ 
Sbjct: 57  -------GSGRMGMRARSALTTALLRSRTNGPCRAAIREPV-----------VRTVHSYA 98

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            A++++    A   +   +    +   +I E     LA    D           +     
Sbjct: 99  YAVLRKAAQRAG-DALPRLLTSAEQDAIIRE----LLAGDAEDGPAATTTWPAHLRPALT 153

Query: 201 DEDIETLISDIISN 214
                T + ++++ 
Sbjct: 154 TAGFATELRNLLAR 167


>gi|283457706|ref|YP_003362292.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133707|dbj|BAI64472.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1279

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 40 AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           G+GKTH L +R LR L     P+ LL L  T+ AA  M   +
Sbjct: 10 PGTGKTHHLTERALRYLADGNDPARLLILAPTRTAATRMRDTI 52


>gi|15678579|ref|NP_275694.1| DNA helicase II related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621627|gb|AAB85057.1| DNA helicase II related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 853

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 62/206 (30%), Gaps = 63/206 (30%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           I  T+ ++           +   AGSGKT ++  R  RL         +L +T       
Sbjct: 183 IRLTEEQERHVKPQPGHRRLRGAAGSGKTLVIAHRAARLAADG---HRVLIVTF------ 233

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
                            +  L   I ++  +     D S     L+T             
Sbjct: 234 -----------------NSTLWQYIREMVDRTLYNFDWS-----LLTFRH---------F 262

Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
           H FC  I+     E  I                E   +  + SI    + ++ +  ++ +
Sbjct: 263 HGFCYDII----HELKIPFD------------QERVVECLIGSI---RDHDISEYMFDAV 303

Query: 197 EISNDEDIE----TLISDIISNRTAL 218
            I   +D E     L+S  ++ R  L
Sbjct: 304 LIDEGQDFEWEWYNLLSQFLTERDEL 329


>gi|298345333|ref|YP_003718020.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 43063]
 gi|298235394|gb|ADI66526.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 43063]
          Length = 568

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 42/144 (29%), Gaps = 39/144 (27%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAA 76
           T+ +Q +         +++ AG GKT  L  R   LL     + +   LL +  T  A  
Sbjct: 9   TQEQQEIYDYEAFDMVITSPAGCGKTEALAYRAKGLLERFDFSGNGRKLLIVAFTNQARD 68

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
            ++ R+ + I+  +                                        + V   
Sbjct: 69  NITERLAKYISVQALKRH------------------------------------VTVCNF 92

Query: 137 HAFCEAIMQQFPLEANITSHFAIA 160
           H     I++       I   + +A
Sbjct: 93  HGLASRIIKAHGNVVGIDDTWEVA 116


>gi|16329962|ref|NP_440690.1| hypothetical protein sll1121 [Synechocystis sp. PCC 6803]
 gi|1652448|dbj|BAA17370.1| sll1121 [Synechocystis sp. PCC 6803]
          Length = 770

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 38/161 (23%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHIL-VQRVLRLLLANAHPST-LLCLTHTKAAA 75
           S   S++ LA        VSA  G+GK+H L V   + +     H    LL +T+T++AA
Sbjct: 27  SLRSSQRPLADWHGGEMAVSAVPGAGKSHSLSVAAAIAIAHHGLHNQEKLLIVTYTRSAA 86

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           A +  +V + + A    S                                    G  VQT
Sbjct: 87  AAIKGKVNQRLRALGLPSL-----------------------------------GFTVQT 111

Query: 136 IHAFCEAIMQQFPLEANITS-HFAIADEEQSKKLIEEAKKS 175
           +H    +I  + P  + +      +   ++  +LI++A + 
Sbjct: 112 LHGLALSIALRHPEVSGLDPEQQTLVSPQKGHRLIKDAVEQ 152


>gi|148544275|ref|YP_001271645.1| superfamily I DNA/RNA helicase-like protein [Lactobacillus
          reuteri DSM 20016]
 gi|184153653|ref|YP_001841994.1| hypothetical protein LAR_0998 [Lactobacillus reuteri JCM 1112]
 gi|227364992|ref|ZP_03849032.1| superfamily I DNA/RNA helicase family protein [Lactobacillus
          reuteri MM2-3]
 gi|325681696|ref|ZP_08161216.1| superfamily I DNA/RNA helicase family protein [Lactobacillus
          reuteri MM4-1A]
 gi|148531309|gb|ABQ83308.1| Superfamily I DNA and RNA helicase-like protein [Lactobacillus
          reuteri DSM 20016]
 gi|183224997|dbj|BAG25514.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227069962|gb|EEI08345.1| superfamily I DNA/RNA helicase family protein [Lactobacillus
          reuteri MM2-3]
 gi|324979008|gb|EGC15955.1| superfamily I DNA/RNA helicase family protein [Lactobacillus
          reuteri MM4-1A]
          Length = 363

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
          S    A AG+GKT+ +  R+ +L+        +L LT T   A  +  ++L+
Sbjct: 4  SIIYLAKAGAGKTYFITHRLDKLINK-----RILYLTFTNDNARNLKEQLLD 50


>gi|254239757|ref|ZP_04933079.1| hypothetical protein PA2G_00382 [Pseudomonas aeruginosa 2192]
 gi|126193135|gb|EAZ57198.1| hypothetical protein PA2G_00382 [Pseudomonas aeruginosa 2192]
          Length = 530

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
          + A AGSGK+  LV RV+ +L      P  L  ++ T A+ A
Sbjct: 11 IFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCA 52


>gi|254234505|ref|ZP_04927828.1| hypothetical protein PACG_00364 [Pseudomonas aeruginosa C3719]
 gi|126166436|gb|EAZ51947.1| hypothetical protein PACG_00364 [Pseudomonas aeruginosa C3719]
          Length = 530

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
          + A AGSGK+  LV RV+ +L      P  L  ++ T A+ A
Sbjct: 11 IFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCA 52


>gi|32481621|gb|AAP84135.1| pathogenesis-related protein [Pseudomonas aeruginosa PA14]
          Length = 643

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 66/210 (31%)

Query: 10  HSETIDLISQTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-- 64
            S  ID        ++ A   + P +   V A AGSGKT  L++ +  ++  +       
Sbjct: 1   MSRRIDSPDTDADREIHACIVATPPQPFVVRAGAGSGKTTSLIKALDWVISEHGASMRAR 60

Query: 65  ---LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
              + C+T+T  A  E+           + ++D+ L                        
Sbjct: 61  KQIVACITYTDLATNEI----------LADVNDDPL------------------------ 86

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
                    + V TIH+F  +I + F  +  +              L  + ++    S +
Sbjct: 87  ---------VHVSTIHSFYWSIAKTFQADIKV-------------WLQNDIRRRI--SEL 122

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDI 211
            +  E       +     N  D E  +  +
Sbjct: 123 EEEFENYSSRVRQTTRDRNKADQERYVRSL 152


>gi|15596602|ref|NP_250096.1| helicase [Pseudomonas aeruginosa PAO1]
 gi|9947352|gb|AAG04794.1|AE004570_2 probable helicase [Pseudomonas aeruginosa PAO1]
          Length = 530

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76
          + A AGSGK+  LV RV+ +L      P  L  ++ T A+ A
Sbjct: 11 IFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCA 52


>gi|241518211|ref|YP_002978839.1| pathogenesis-related protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240862624|gb|ACS60288.1| pathogenesis-related protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 639

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 49/129 (37%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-----LLCLTHTKAAAAEMSHRV 82
           +DP +S ++ A AGSGKT  L + +      +          +  +T+T AAA E++ RV
Sbjct: 28  NDP-KSFFLYAGAGSGKTRSLKEALDGFRDRHGDEFRRAGKKVAVITYTNAAADEIAARV 86

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            +                                                + TIH+FC +
Sbjct: 87  GQDTL-------------------------------------------FPISTIHSFCWS 103

Query: 143 IMQQFPLEA 151
            +  +  + 
Sbjct: 104 HIGTYYTDI 112


>gi|190895191|ref|YP_001985484.1| hypothetical protein RHECIAT_PC0000864 [Rhizobium etli CIAT 652]
 gi|190700852|gb|ACE94934.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 430

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 43/121 (35%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V A AG GKT ++   + R   + A P  +L LTHT A  A +  R+ ++         
Sbjct: 15  LVVAPAGCGKTQLITDALAR--HSGAKP--VLVLTHTNAGVAALRGRLEKV--------- 61

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                      G KP+    +                   T+  F   ++  FP  A   
Sbjct: 62  -----------GVKPSSYRAA-------------------TLDGFAIRLISTFPQRAGHD 91

Query: 155 S 155
            
Sbjct: 92  P 92


>gi|260206547|ref|ZP_05774038.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289575917|ref|ZP_06456144.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289540348|gb|EFD44926.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
          Length = 1055

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 36/194 (18%)

Query: 23  EQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           E   A  P       V    G+GK+ +LV+  +  + A   P ++L LT           
Sbjct: 8   EAGAALVPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLT----------- 56

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                      +     SA  T +   + N    +  R  +           V+T+H++ 
Sbjct: 57  -------GSGRMGMRARSALTTALLRSRTNGPCRAAIREPV-----------VRTVHSYA 98

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
            A++++    A   +   +    +   +I E     LA    D           +     
Sbjct: 99  YAVLRKAAQRAG-DALPRLLTSAEQDAIIRE----LLAGDAEDGPAATTTWPAHLRPALT 153

Query: 201 DEDIETLISDIISN 214
                T + ++++ 
Sbjct: 154 TAGFATELRNLLAR 167


>gi|269125655|ref|YP_003299025.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268310613|gb|ACY96987.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 708

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  KSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            S++ +A  P+    A VS   G+GKT + + RV  LL        +L  T T A A  +
Sbjct: 254 PSQRRIAYKPSYAGPAQVSGGPGTGKTVVALHRVKHLLSLPGD-GRILLTTFTNALADSL 312

Query: 79  SH 80
             
Sbjct: 313 RE 314


>gi|254510778|ref|ZP_05122845.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
 gi|221534489|gb|EEE37477.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
          Length = 910

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 34/110 (30%)

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +  T T+ AA E+  R+   +    +L                                 
Sbjct: 1   MVSTFTEKAAKELVTRITSRLGGIENLG-------------------------------- 28

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK-LIEEAKK 174
             P  L V T+H+    ++++F     I  ++ + D+   +  L ++A +
Sbjct: 29  -NPLDLTVGTLHSIFLKLLEEFRAYTEIQKNYTVLDQFDQQYFLFQQASE 77


>gi|256962365|ref|ZP_05566536.1| DNA helicase [Enterococcus faecalis Merz96]
 gi|293385317|ref|ZP_06631130.1| putative DNA helicase [Enterococcus faecalis R712]
 gi|293386571|ref|ZP_06631154.1| putative DNA helicase [Enterococcus faecalis S613]
 gi|312908105|ref|ZP_07767085.1| UvrD/REP helicase [Enterococcus faecalis DAPTO 512]
 gi|312979002|ref|ZP_07790722.1| UvrD/REP helicase [Enterococcus faecalis DAPTO 516]
 gi|256952861|gb|EEU69493.1| DNA helicase [Enterococcus faecalis Merz96]
 gi|291077423|gb|EFE14787.1| putative DNA helicase [Enterococcus faecalis R712]
 gi|291083976|gb|EFE20939.1| putative DNA helicase [Enterococcus faecalis S613]
 gi|310625916|gb|EFQ09199.1| UvrD/REP helicase [Enterococcus faecalis DAPTO 512]
 gi|311288181|gb|EFQ66737.1| UvrD/REP helicase [Enterococcus faecalis DAPTO 516]
          Length = 573

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAAAAEMSHRVLEII 86
          +SA  G+GKT +L   V+ ++  +   S L    C+T+T  AA  +  R+   +
Sbjct: 22 ISAGPGAGKTTLLANHVIEVIKNSEKISELRRVACITYTNIAAETLKRRLGLSL 75


>gi|302390478|ref|YP_003826299.1| UvrD/REP helicase [Thermosediminibacter oceani DSM 16646]
 gi|302201106|gb|ADL08676.1| UvrD/REP helicase [Thermosediminibacter oceani DSM 16646]
          Length = 683

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 77/222 (34%), Gaps = 30/222 (13%)

Query: 17  ISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +  T+ ++ +  A        ++A AG+GKT  L      L++       LL +   KA 
Sbjct: 112 VKPTEEQKRVLEALGGLDRISINAFAGTGKTTTL-----ELIVDRYRDKKLLLMAFNKAI 166

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A E+  R    +  + ++      A       ++ N   +   R L   I E        
Sbjct: 167 AEELRER----LKGFGNVDIYTTHALAYNYVKEELNIGHLKDERELTQFIKEYYDN---- 218

Query: 135 TIH----AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            I     AF   ++  +       S     +E     LI   K+  +      NN ++  
Sbjct: 219 -IDYPLAAFLRKLLIAYCR-----SSAREINERVVNSLINGDKELWIYHRFALNNVKVSD 272

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232
              ++ EI N      LI+D+  +   LK  F      + R+
Sbjct: 273 LAEKLQEIYN----AALINDMFVHELYLK-YFQINIDRFLRR 309


>gi|222033744|emb|CAP76485.1| hypothetical protein LF82_318 [Escherichia coli LF82]
 gi|312946598|gb|ADR27425.1| hypothetical protein NRG857_10050 [Escherichia coli O83:H1 str.
          NRG 857C]
 gi|324008910|gb|EGB78129.1| hypothetical protein HMPREF9532_01332 [Escherichia coli MS 57-2]
          Length = 577

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHR 81
           RS  + A AG+GKT+ L++ +  L+  N          + C+T T  A  E+  R
Sbjct: 26 GRSFRLEAGAGAGKTYSLIKALRFLIERNKDLFEKRSQQIACITFTNVAKDEIVAR 81


>gi|304558201|gb|ADM40865.1| ATP-dependent DNA helicase [Edwardsiella tarda FL6-60]
          Length = 563

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 41/145 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + +VSA  G+GKT  L+  +   +   +     + LTHT AAA E++ R           
Sbjct: 14  NLFVSACPGAGKTKFLLAMLEDNIRYGSENKWHIVLTHTNAAADEINLR----------- 62

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE-AIMQQFP-LE 150
                                       L         +   TIH+F    +++++    
Sbjct: 63  ----------------------------LDNQNVINDRIWCGTIHSFLLEWVVRRYAGAM 94

Query: 151 ANITSHFAIADEEQSKKLIEEAKKS 175
               + F +  E + + +I + +K 
Sbjct: 95  VRTKNGFRLISEREHRDIIRKIEKD 119


>gi|262203379|ref|YP_003274587.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
 gi|262086726|gb|ACY22694.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
          Length = 1129

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 34/182 (18%)

Query: 32  RSAWVSANAGSGKTHILVQR-VLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           R   +    GSGKT ++V   V RL   +  P ++L L  ++ AAA +   +   + A S
Sbjct: 55  RPIRIHGGPGSGKTALIVDAAVARLRAPDVEPESVLVLASSRQAAATLREEITRRVLAGS 114

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
             +D                       R  L   L  P    V+T+H++  AI++     
Sbjct: 115 DATDG----------------------RRALGGALREPL---VRTVHSYAFAILRLQASA 149

Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210
            N      +    +   ++ E     +          L+ A          +     + D
Sbjct: 150 HNNPP-PRLITGSEQDVVLRELLAGDIEDGAGYWPAHLRPAL-------GTDGFAQALRD 201

Query: 211 II 212
           ++
Sbjct: 202 LM 203


>gi|313105868|ref|ZP_07792131.1| hypothetical protein PA39016_000110166 [Pseudomonas aeruginosa
           39016]
 gi|310878633|gb|EFQ37227.1| hypothetical protein PA39016_000110166 [Pseudomonas aeruginosa
           39016]
          Length = 738

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
           +A AGSGKT  L+ RV R LL +  P+ +  +   + AA     R  + +   +      
Sbjct: 2   AAVAGSGKTETLIGRV-RHLLRDISPAHIAVVMFNRDAALSFRRRFEQAVQGTAP-EIRT 59

Query: 97  LSAEITKIQGKKPNKSDMSKAR 118
            ++   KI  +      + +AR
Sbjct: 60  FNSMGNKIVNRLVQNGLLPEAR 81


>gi|152983232|ref|YP_001352719.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille]
 gi|151283309|gb|ABR91719.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille]
          Length = 573

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVL---RLLLANAHPSTLLCLTHTKAA 74
           +Q + + P     V A AGSGKT   V+R++   RLL  +     +  L+ +  A
Sbjct: 6  EQQAIINAPLAPLAVIACAGSGKTATAVRRLVEMRRLLADSRA--RVALLSFSNVA 59


>gi|307703405|ref|ZP_07640347.1| recombination helicase AddA [Streptococcus oralis ATCC 35037]
 gi|307622812|gb|EFO01807.1| recombination helicase AddA [Streptococcus oralis ATCC 35037]
          Length = 1092

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 12/106 (11%)

Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIML-DNNEELKKAFYE 194
            +F +  + +     +I  +F I  +E +   L  E            +N E+  +    
Sbjct: 2   DSFTQKFLGKHGYLIDIAPNFRILQNESEQLILKNEVFHQVFEDHYQGENKEKFSRLVKN 61

Query: 195 ILEISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239
                 DE            R  + K+  F  S    +K +  S  
Sbjct: 62  FAGRGKDER---------GLRQQVYKIYDFLQSTSSPQKWLNGSFL 98


>gi|160939290|ref|ZP_02086641.1| hypothetical protein CLOBOL_04184 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438253|gb|EDP16013.1| hypothetical protein CLOBOL_04184 [Clostridium bolteae ATCC
           BAA-613]
          Length = 644

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            +S  V A  GSGKT  L+ +++ L+  L       +  +THT  A  E+  R+   
Sbjct: 46  DKSISVMACPGSGKTTALMGKIIALVNHLPLNDGKGICIITHTNVAINEIKSRLGSR 102


>gi|291536958|emb|CBL10070.1| Superfamily I DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 689

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 14  IDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLL 66
           IDL+++ KS   L   SD   S   ++ AGSGKT+ L+Q +  ++  +      H   + 
Sbjct: 9   IDLMNEKKSLNKLFECSDSFTSVVFNSGAGSGKTYALIQCLKYIISIHHDDLKNHNQKIG 68

Query: 67  CLTHTKAAAAEMS---------------HRVLEII----TAWSHLSDEILSAEITKIQGK 107
           C+T+T  AA  +                 R+  II    +A   L  E L++E+  +  +
Sbjct: 69  CITYTNVAAEHIKHQLGVSDVVEISTIHERIWSIICSQKSALLGLHIEKLNSEVELLNSQ 128

Query: 108 KPNKSDMSKARHLLITILETPGGL 131
             + S+  K R L  +  E    L
Sbjct: 129 LLSNSEYEKYRALDASAQERFFQL 152


>gi|325107286|ref|YP_004268354.1| DNA helicase II [Planctomyces brasiliensis DSM 5305]
 gi|324967554|gb|ADY58332.1| DNA helicase II [Planctomyces brasiliensis DSM 5305]
          Length = 613

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL--------RLLLANAHPSTLLCLT 69
          +Q   E L      R   + A AGSGKT  LV+ +         R+L         +C+T
Sbjct: 7  TQADQEVLKCLREKRPFAMIAGAGSGKTTSLVEALKALDRLGGHRMLRDGQKA---VCIT 63

Query: 70 HTKAAAAEMSHRVLE 84
          +T  A   +  R+ +
Sbjct: 64 YTNRATDVIRDRLRQ 78


>gi|218441857|ref|YP_002380186.1| UvrD/REP helicase [Cyanothece sp. PCC 7424]
 gi|218174585|gb|ACK73318.1| UvrD/REP helicase [Cyanothece sp. PCC 7424]
          Length = 781

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 40/161 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80
           ++ LA        VSA  G+GK+H L       +  N       L+ +T+T++AAA +  
Sbjct: 26  QRSLADWKGGRMAVSAVPGAGKSHSLSVAAAFAIARNQLHARKQLVIVTYTRSAAASIKS 85

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           ++ E +                                         P G  VQT+H   
Sbjct: 86  KIKERLRELKLP-----------------------------------PTGFTVQTLHGLA 110

Query: 141 EAIMQQFPL--EANITSHFAIADEEQSKKLIEEAKKSTLAS 179
             I  + P   E N+ S   I     S ++I    +  + S
Sbjct: 111 LQIASRHPDLSELNLESS-TIIIPTPSHRIIRACVEQWITS 150


>gi|158337497|ref|YP_001518672.1| UvrD/REP helicase, putative [Acaryochloris marina MBIC11017]
 gi|158307738|gb|ABW29355.1| UvrD/REP helicase, putative [Acaryochloris marina MBIC11017]
          Length = 765

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 41/135 (30%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----AHPSTLLCLTHTKAAAAEM 78
           +Q LA        VSA  G+GK++ +   V   +            L+ +T T++AA  +
Sbjct: 20  QQELADWQAGPLAVSAVPGAGKSYGMA--VAAAITLGRQNLNRAQQLVIVTFTRSAATHL 77

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             +V                                   R  L  +    GG  VQT+H 
Sbjct: 78  KQQV-----------------------------------RKHLRELQLPLGGFTVQTLHG 102

Query: 139 FCEAIMQQFPLEANI 153
               I  + P  + I
Sbjct: 103 LALNIASRHPQLSGI 117


>gi|325922071|ref|ZP_08183868.1| hypothetical protein XGA_2884 [Xanthomonas gardneri ATCC 19865]
 gi|325547455|gb|EGD18512.1| hypothetical protein XGA_2884 [Xanthomonas gardneri ATCC 19865]
          Length = 591

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 37/192 (19%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSH 80
              D  RS  + A AG+GKT+ L + + RL+             + C+T+T  A  E+  
Sbjct: 29  ACLDEARSFRLEAGAGAGKTYSLDKALRRLIDHRGSELLRQRQQIGCITYTNVAKDEILS 88

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R+       S        + +   Q        +          LE  GG  +       
Sbjct: 89  RIGAHPAVRSETVHGFCWSILQDFQTTL---RALVPGLPGWAERLEPTGG--IG------ 137

Query: 141 EAIMQQFPLEANITSHFAIADE------EQSKKLIEEAK-----KSTLAS----IMLDNN 185
               ++   E  +     + DE      E    L+ +       ++ L +    +++D  
Sbjct: 138 ---ARRVHYELGVP---RVVDEQVTIRHEDVLALMIQVMAFPKFRAVLTARYPVLLIDEY 191

Query: 186 EELKKAFYEILE 197
           ++   AF + L+
Sbjct: 192 QDTDAAFVDALK 203


>gi|126659573|ref|ZP_01730704.1| hypothetical protein CY0110_06199 [Cyanothece sp. CCY0110]
 gi|126619116|gb|EAZ89854.1| hypothetical protein CY0110_06199 [Cyanothece sp. CCY0110]
          Length = 788

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 43/183 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS-TLLCLTHTKAAAAEMSH 80
           +Q LA+       +SA  G+GK+H L      ++     HP   L+ +T+T++AAA +  
Sbjct: 31  QQQLATWEGGKMAISAVPGAGKSHSLAVAAAMIIARYQLHPRKQLIIVTYTRSAAAGIKA 90

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           ++ E +                                           G  VQT+H   
Sbjct: 91  KIKERLKELKIPQT-----------------------------------GFMVQTLHGLA 115

Query: 141 EAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             I  + P  + +      +     S ++I  A ++ ++      N +  +   E +E  
Sbjct: 116 LNIATRHPELSQLNLETSTVIIPTPSHRVIRRAVENWISR-----NPQRYQLLLEGIEFD 170

Query: 200 NDE 202
            +E
Sbjct: 171 GEE 173


>gi|114327843|ref|YP_745000.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
 gi|114316017|gb|ABI62077.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
          Length = 588

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 54/130 (41%)

Query: 26  LASDPTRSAWVSANAGSGKTHIL--------VQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
              D   S  + A AG+GKT+ L         +R   LL          C+T+T  A  E
Sbjct: 22  ACLDNGHSFRLEAGAGAGKTYSLDKALRRLIDRRGAELLRRGQQVG---CITYTNVAKDE 78

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+                                           +    ++ +TIH
Sbjct: 79  IISRI-------------------------------------------QAHPAVRTETIH 95

Query: 138 AFCEAIMQQF 147
            FC +++Q F
Sbjct: 96  GFCWSVLQDF 105


>gi|302680494|ref|XP_003029929.1| hypothetical protein SCHCODRAFT_58687 [Schizophyllum commune H4-8]
 gi|300103619|gb|EFI95026.1| hypothetical protein SCHCODRAFT_58687 [Schizophyllum commune H4-8]
          Length = 804

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 6/128 (4%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ++ ++ T+   +      R + V    G+GKT  +++ V  L +    P  L+  T+T 
Sbjct: 242 ILEGLNDTQRRAVATMIGQRISLVQGPPGTGKTRTIIETVKLLKVHFEVPQPLMICTYTN 301

Query: 73  AAAAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            A   +   +++       +     +  E+    +     + P +  +  A+     I +
Sbjct: 302 VAVDNLVEGLVKAGLKPLRVGFGGKVQAELAEHTMDYKLNQHPARPAIDAAQEERQRIYK 361

Query: 127 TPGGLKVQ 134
               L+  
Sbjct: 362 ELDELRCS 369


>gi|77360039|ref|YP_339614.1| DNA helicase II [Pseudoalteromonas haloplanktis TAC125]
 gi|76874950|emb|CAI86171.1| DNA helicase II [Pseudoalteromonas haloplanktis TAC125]
          Length = 615

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTHTKAAAAEMSHR--- 81
            +S  V A AGSGKT  LV   L  L          +   ++C+T+TK A A +  R   
Sbjct: 21  AQSFSVVAGAGSGKTTSLVT-ALNFLRDKVGSDLRKNGQKIVCITYTKRATAVIEERLGF 79

Query: 82  ----VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
               ++  I ++   S    + +I          + ++KAR 
Sbjct: 80  DELYLVSTIHSFLWSSISRFTKDIRVALRDSLIPNHIAKARE 121


>gi|330822270|ref|YP_004362491.1| ATP-dependent DNA helicase [Burkholderia gladioli BSR3]
 gi|327374107|gb|AEA65461.1| ATP-dependent DNA helicase [Burkholderia gladioli BSR3]
          Length = 608

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74
          +   T  ++ +   P     V A AGSGKT   V R++R+          +  L+ +  A
Sbjct: 1  MSDLTPEQKAVVDAPMVPLCVMACAGSGKTKTAVHRLVRVRCNLGEARGRVALLSFSNVA 60


>gi|325287278|ref|YP_004263068.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
 gi|324322732|gb|ADY30197.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
          Length = 809

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPST--LLCLTHTK 72
             ++  A D  R   +   AG GKT ++ +R++ +L            +L  T  K
Sbjct: 322 PEQKKAAEDDGRPTVIYGPAGCGKTVVITERIINILKNSSEKPIEEISILVTTFNK 377


>gi|326383309|ref|ZP_08204997.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198059|gb|EGD55245.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1101

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 40/184 (21%)

Query: 30  PTRSAWVSANAGSGKTHILVQ-RVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P R   V    G+GKT ++V   V RLL     P ++L L   + AA ++   +   + +
Sbjct: 40  PWRPWRVHGGPGTGKTSLIVDTAVARLLDPGVDPESVLVLAANRRAATQLRAEITRRVLS 99

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                   L   +                               V+T+H++  A+++   
Sbjct: 100 AGGSLGGALREPL-------------------------------VRTVHSYAFAVLRLQA 128

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
                     +    +   ++ E     LA  + D  +    +    L     +     +
Sbjct: 129 SAHGNPP-PRLITGSEQDVILRE----LLAGDVEDGADYWPASLRPALTT---DGFAQAL 180

Query: 209 SDII 212
            D++
Sbjct: 181 RDLM 184


>gi|310639443|ref|YP_003944202.1| DNA helicase II [Ketogulonicigenium vulgare Y25]
 gi|308753019|gb|ADO44163.1| DNA helicase II [Ketogulonicigenium vulgare Y25]
          Length = 586

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 39/213 (18%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTHTKAAAAEMS 79
              D  RS  + A AG+GKT+ L +R LR L+             + C+T+T  A  E+ 
Sbjct: 22  ACLDEGRSFRLEAGAGAGKTYSL-ERALRRLIEKQGSALLRQRQQIGCITYTNVAKDEI- 79

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
             +       +   + +     + +Q  +P   ++          L   GG+     H  
Sbjct: 80  --IARTNAHPAVRPETVHGFCWSVLQDFQPTLRELVPGLPTWEERLAETGGVG----H-- 131

Query: 140 CEAIMQQFPLEANITSHFAIADE------EQSKKLIEEAK-----KSTLAS----IMLDN 184
                ++   E        + D+      E    L+ +A      +  L S    +++D 
Sbjct: 132 -----RRIHYELGYPG---VTDDQVSLRHEDVLSLMIQAMSRPKFRRVLTSRYPILLIDE 183

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTA 217
            ++    F + L+    +  E  +  +  +   
Sbjct: 184 YQDTDAGFVDALKEWFLDRGEGPLIGLFGDHWQ 216


>gi|21244660|ref|NP_644242.1| DNA helicase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110346|gb|AAM38778.1| DNA helicase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 609

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
            +  + + P +   V A AGSGKT   V+R+  +      H   +  L+ +  A  E   
Sbjct: 20  EQGAIITAPLQPMSVIACAGSGKTFTAVRRLAHIRRCLGDHRGRVALLSFSNIAV-ETFR 78

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           R  + +   S         EI  + G          A  
Sbjct: 79  REYQALAVGSLKIPSHQRVEIDTLDGFITTNILRPHAHR 117


>gi|328471737|gb|EGF42614.1| hypothetical protein VP10329_01240 [Vibrio parahaemolyticus
          10329]
          Length = 583

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 6  SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP--- 62
          + Q   ET++ +           D  +   + A AG+GKT+ L++ +  L+   A+    
Sbjct: 7  AAQASVETLESL-------RGCIDQGQCFRLEAGAGAGKTYSLIESLKHLISLRANEFVV 59

Query: 63 --STLLCLTHTKAAAAEMSHR 81
              + C+T+T  A  E+  R
Sbjct: 60 SGKQVACITYTNVAKDEIKAR 80


>gi|89897382|ref|YP_520869.1| hypothetical protein DSY4636 [Desulfitobacterium hafniense Y51]
 gi|89336830|dbj|BAE86425.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 594

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRV 82
          SD      V A  G+GKT  L+  +  +L  +      S + C+T+T  A  E+  R+
Sbjct: 16 SDVDHPFKVFAGPGAGKTFWLINNIKNILKNSTRLFSASKISCITYTNVAVEEIQTRL 73


>gi|290956157|ref|YP_003487339.1| DNA helicase II [Streptomyces scabiei 87.22]
 gi|260645683|emb|CBG68774.1| putative DNA helicase II [Streptomyces scabiei 87.22]
          Length = 711

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 18/192 (9%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            +  ++              V+   G+GKT   + RV  LL   A  + +L  T+T A A
Sbjct: 250 FLHPSQRRVAYRVSYGGPVQVTGGPGTGKTVAALHRVKHLLTR-APGTRVLLTTYTNALA 308

Query: 76  AEMSHRVLEIITAWSHLS--------DEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           A +   +  ++     L         D      +T++ G+ P+     + R L   +++ 
Sbjct: 309 AALRENLSLLLDGDEALLARVDVTTVDSYAHGVVTRLDGRSPSPVGDREERQLWERVVKK 368

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            G           E  + Q      +       D    K ++   + S L++   +    
Sbjct: 369 LGLPW-------TEQFLAQEYRHVVLAQDLRTLD--AYKAVVRRGRGSALSAARREQLWP 419

Query: 188 LKKAFYEILEIS 199
             + F E+L + 
Sbjct: 420 AVELFEEMLRVR 431


>gi|188585438|ref|YP_001916983.1| LexA repressor [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350125|gb|ACB84395.1| LexA repressor [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 815

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 32/155 (20%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79
             ++++ + P     +   AGSGKT + V ++  LL         +L +T TK       
Sbjct: 6   DQKRIIETKPGGHMLIRGVAGSGKTTVAVHKIPHLLNHYCSQDDKVLVITFTK------- 58

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                                   +        +  +    L +++ +   L++ T    
Sbjct: 59  -----------------------TLINYINYIYNNIEHETTLFSMINSDQNLQISTADKI 95

Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174
              + +++  +A I     I  +++  +L+ +A K
Sbjct: 96  IFHLYRKYEEKAGIEER-EIIPQKEKYRLLNQAIK 129


>gi|87124724|ref|ZP_01080572.1| probable exodeoxyribonuclease V, alpha subunit RecD [Synechococcus
           sp. RS9917]
 gi|86167603|gb|EAQ68862.1| probable exodeoxyribonuclease V, alpha subunit RecD [Synechococcus
           sp. RS9917]
          Length = 565

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           + ++ ++Q + E + A    R   +S   G+GKT  +V+ + + L   A     L    T
Sbjct: 128 DLLNGLNQEQREAVAAIGRHRVVLLSGGPGTGKTSTVVRMLAQALQHQADLRIGLAAP-T 186

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILS----AEITKIQGKKPNKSDMSKARHLLITIL 125
             AAA +   +   +        E L     A + +    +P      + R L + +L
Sbjct: 187 GKAAARLQEAIRSGLPQLPLPLQERLGQLPCATLHRWLQARPGGYGRHRHRPLPLDLL 244


>gi|262039978|ref|ZP_06013244.1| helicase IV [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259042671|gb|EEW43676.1| helicase IV [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 227

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
              ++E  ++++      S+     +  RS  V A AGSGKT +LV
Sbjct: 182 LEQYREFFDSVESSPLNASQARAVVNGERSLLVLAGAGSGKTSVLV 227


>gi|4140440|gb|AAD04055.1| ATP-dependent helicase [Chlamydia trachomatis]
          Length = 65

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTL 65
          +   V A AG+GKT ++  R+L L+  +   P  +
Sbjct: 31 QPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQI 65


>gi|260905071|ref|ZP_05913393.1| UvrD/Rep helicase [Brevibacterium linens BL2]
          Length = 841

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEM 78
                +S  AG+GKT +LV R +RL  A+A        ++  T T+  A+E+
Sbjct: 355 NGPFRLSGGAGTGKTVVLVHRAVRLAKADAPVDGVAPRVVLTTFTRNLASEL 406


>gi|254416448|ref|ZP_05030200.1| UvrD/REP helicase domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176652|gb|EDX71664.1| UvrD/REP helicase domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 777

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 70/233 (30%), Gaps = 49/233 (21%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL----RLLLANAHPSTLLCLTHT 71
             S  + +Q +A     S  VSA  G+GK+  +         R  L       L+ +T T
Sbjct: 28  YNSLRQGQQPMADWQGGSLAVSAVPGAGKSTGMAVAAAIAIARYQLHGK--RQLVVVTFT 85

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++AAA +  ++ E +                                             
Sbjct: 86  RSAAASIKGKIREYLKPLRLPQ-----------------------------------NSF 110

Query: 132 KVQTIHAFCEAIMQQFPLEANITSH-FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            V T+H     I  + P  + I      +    Q+ +LI    +  +AS     N     
Sbjct: 111 VVYTLHGLALNIANRHPDLSGINLDTLTVVTPNQTHRLIRACVEQWIAS-----NPRRYS 165

Query: 191 AFYEILEISNDEDIETLISDIISNRTALK-LIFFFFSYLWRRKIIEKSLWSIA 242
              E +    +E  E L    +     L  L +          ++ + LW I+
Sbjct: 166 LLLEGVSFDGEET-ERLRRQSVLRTEVLPSLAYTVIHEAKSSGLLPEDLWVIS 217


>gi|187921118|ref|YP_001890150.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187719556|gb|ACD20779.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 872

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 36  VSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V A AGSGK+  LV RV+ L L    + + +   T TK    E     ++ +        
Sbjct: 165 VVAGAGSGKSTSLVLRVIALNLYRGINRNEISVFTFTK----ESRKDFVKKLRTQMQAWG 220

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
           E LS               +  AR ++ T       +   TI   C  ++       ++ 
Sbjct: 221 ETLS---------------LDDARGVVRTFHSMVLRMARSTIDP-CLKVL----ELIDLE 260

Query: 155 SHFAIADEEQSKKLIE 170
               I D    + L+E
Sbjct: 261 KGGQIPD-TDIENLLE 275


>gi|229506125|ref|ZP_04395634.1| DNA helicase IV [Vibrio cholerae BX 330286]
 gi|229356476|gb|EEO21394.1| DNA helicase IV [Vibrio cholerae BX 330286]
          Length = 304

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           S+Q           V A AGSGKT +L  RV  LL ++
Sbjct: 215 SQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSH 252


>gi|298707412|emb|CBJ30041.1| DNA helicase II [Ectocarpus siliculosus]
          Length = 1317

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 24/158 (15%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L+   + + +L    T +  ++A AG+GKTH L  R+ R+L     P     L+     A
Sbjct: 67  LLDPAQEDVVLLDLETPAILLTAGAGTGKTHTLAARLARIL--GVEPRRPTELSVDNLTA 124

Query: 76  AEMSH-----------RVLEIITAWSHLSDEILSAEITKIQGKKPNKS-----DMSKARH 119
            E +            R+             +            P            A+ 
Sbjct: 125 VEKAGAGIGAGVGRLGRLHVFGDEGGAGKGGLWGHRRVAAHAAAPESVLVLSFTKQGAQD 184

Query: 120 LLITILE------TPGGLKVQTIHAFCEAIMQQFPLEA 151
           +    +           +   T H+F   +++Q     
Sbjct: 185 VRERAIAVGVPRAQADRVWAATFHSFAATVLKQNGHLL 222


>gi|255284295|ref|ZP_05348850.1| UvrD/REP helicase [Bryantella formatexigens DSM 14469]
 gi|255265142|gb|EET58347.1| UvrD/REP helicase [Bryantella formatexigens DSM 14469]
          Length = 588

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
          ++ +   EQ    +      ++A  GSGKT+ +  ++L  +       + +  L+ T  A
Sbjct: 1  MVEKMTEEQKEFLNAEGKVVINACPGSGKTYTVAHKLLSYVDNWEDYHSGVAVLSFTNVA 60

Query: 75 AAEMSHRVLEIITAWSHLS 93
          + E+  +   I  +   L 
Sbjct: 61 SNEIYEKAQSIHGSLGKLG 79


>gi|328542224|ref|YP_004302333.1| hypothetical protein SL003B_0604 [Polymorphum gilvum SL003B-26A1]
 gi|326411974|gb|ADZ69037.1| Hypothetical conserved protein [Polymorphum gilvum SL003B-26A1]
          Length = 472

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 44/143 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V+A AG GKTH++ + + R       P  +L LTHT A    +  R+ +   A       
Sbjct: 16  VAAPAGCGKTHLIAETLKR--HTGTKP--ILILTHTNAGVVALRARLDKAGVA------- 64

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                              +KA  L              TI  +   ++  FP    +  
Sbjct: 65  -------------------AKAYRL-------------STIDGWAIRMVGLFPARTGLDP 92

Query: 156 -HFAIADEEQSKKLIEEAKKSTL 177
               + D      +I EA    L
Sbjct: 93  ATLKLNDARPDYPIIREAAWRLL 115


>gi|220913224|ref|YP_002488533.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
 gi|219860102|gb|ACL40444.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
          Length = 1115

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHIL----VQRVLRLLLANAHPSTLLCLTHTK 72
           ++  +   +  +  +    V    G+GKT +L    V+RV R       P+ +L L  T+
Sbjct: 67  LTPDQQAAVDVAAGSGPVLVPGAPGTGKTTVLVESAVERVHR---DGLDPAGILILAPTR 123

Query: 73  AAAAEMSHRVLEIITA 88
            AA  +  R    +  
Sbjct: 124 LAADFLRDRFTARLDR 139


>gi|192362194|ref|YP_001984100.1| putative DNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688359|gb|ACE86037.1| putative DNA helicase [Cellvibrio japonicus Ueda107]
          Length = 686

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           D    A VS +AG+GKT + + R + L   +   S +L +T ++A A  +  ++  ++  
Sbjct: 240 DFNGPARVSGSAGTGKTVVALHRAVHLARQHPD-SRVLLVTFSEALANNLRIKLRCLVAH 298

Query: 89  WSHLSD-------EILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
              L++       + L+  + + Q    N+   ++   LL    +   
Sbjct: 299 QPTLAERIDVYALDALADRLYRQQLGPVNRVSDAQLGQLLQQAADDLA 346


>gi|330506916|ref|YP_004383344.1| hypothetical protein MCON_0714 [Methanosaeta concilii GP-6]
 gi|328927724|gb|AEB67526.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 598

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 49/141 (34%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQ----RVLRLLLANAHPSTLLCLTHTKAA 74
            T  ++ +    +R   V A  GSGKT + V+    R+      NA  +++   + T  A
Sbjct: 9   PTPEQKAVIDSNSRITVVRACPGSGKTRVFVESLKMRIDSWTKKNAGIASI---SFTNVA 65

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
                 ++ E I                                         P    + 
Sbjct: 66  ----QEQIAEGIGK-------------------------------------HLPYPHFIG 84

Query: 135 TIHAFCEA-IMQQFPLEANIT 154
           T+ AF    +++ F     + 
Sbjct: 85  TLDAFALRYVVRPFGHLVGLP 105


>gi|284992135|ref|YP_003410689.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065380|gb|ADB76318.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 752

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           +  +   +       +S  AG+GKT +L+ R  R L      + +L  T TK  A  M 
Sbjct: 273 EQRKYATATYNGPFRLSGGAGTGKTVVLLHR-ARHLARQNPNARILLTTFTKNLADAMK 330


>gi|254384450|ref|ZP_04999791.1| UvrD/REP helicase [Streptomyces sp. Mg1]
 gi|194343336|gb|EDX24302.1| UvrD/REP helicase [Streptomyces sp. Mg1]
          Length = 713

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            +  ++              V+   G+GKT + + RV  LL      S +L  T+T A A
Sbjct: 250 FLHPSQRRVAYRVSYGGPVQVTGGPGTGKTVVALHRVKHLLSRAPD-SRILLTTYTNALA 308

Query: 76  AEMSH 80
             +  
Sbjct: 309 QALRE 313


>gi|220936011|ref|YP_002514910.1| hypothetical protein Tgr7_2850 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997321|gb|ACL73923.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 579

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PS---TLLCLTHTKAAAAEMSHR 81
          D      + A AG+GKT+ L++ +  L+  +    P     + C+T T  A  E++ R
Sbjct: 24 DAGEHFRLEAGAGAGKTYSLIKALHYLIERHKSTFPRKNKQIACITFTNVARDEIAAR 81


>gi|229173818|ref|ZP_04301358.1| hypothetical protein bcere0006_29160 [Bacillus cereus MM3]
 gi|228609668|gb|EEK66950.1| hypothetical protein bcere0006_29160 [Bacillus cereus MM3]
          Length = 519

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 28/48 (58%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++A  GSGKT+ +V++++ +     +   ++ ++ T+ A+ E+  R
Sbjct: 1  MVITAKPGSGKTYTIVEKIVDISKNLLNYQGVIAISFTRKASQELELR 48


>gi|186684554|ref|YP_001867750.1| UvrD/REP helicase [Nostoc punctiforme PCC 73102]
 gi|186467006|gb|ACC82807.1| UvrD/REP helicase [Nostoc punctiforme PCC 73102]
          Length = 805

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 48/169 (28%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILV-----------QRVLRLLLANAHPSTLLCLTHT 71
           +Q +A   +    +SA  G+GK+  +            +R  +     +    L+ +T T
Sbjct: 43  QQQMADWGSGPLAISAVPGAGKSTGMAAAAAIAIARQYERYAQ--SRPSSRRHLVVVTFT 100

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++AAA +  ++ + +     L                                     G 
Sbjct: 101 RSAAANIKAKIRKFLRDDLSLPQT----------------------------------GF 126

Query: 132 KVQTIHAFCEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179
            V T+H     I  ++   + +   +  +    QS + I  A +  +A+
Sbjct: 127 FVYTLHGLALNIASRYSDLSGLQLENVTLITPTQSHRFIRSAVEQWIAN 175


>gi|238585186|ref|XP_002390791.1| hypothetical protein MPER_09875 [Moniliophthora perniciosa FA553]
 gi|215454628|gb|EEB91721.1| hypothetical protein MPER_09875 [Moniliophthora perniciosa FA553]
          Length = 310

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D ++ T+   +      R + +    G+GKT  +++ +  L +    P  LL  T+T  
Sbjct: 191 LDELNDTQRRAMAMMIGERISLIQGPPGTGKTKTIIETIKMLKIHFQVPEPLLVCTYTNV 250

Query: 74  AAAEMSH 80
           A   +  
Sbjct: 251 AVDNLVE 257


>gi|254478042|ref|ZP_05091426.1| hypothetical protein CDSM653_51 [Carboxydibrachium pacificum DSM
           12653]
 gi|214036046|gb|EEB76736.1| hypothetical protein CDSM653_51 [Carboxydibrachium pacificum DSM
           12653]
          Length = 1506

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 11  SETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
            E I        EQL  ++   +     V    G+GKTH +   +  LL       ++L 
Sbjct: 363 PEEILFSKPWNKEQLKIAERLENYSAVLVQGPPGTGKTHTIANLIGHLLAQG---KSVLV 419

Query: 68  LTHTKAAAAEMSHRVLEIITAW---SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
             HT  A   +  +++E +         +D     ++ +       +     AR L    
Sbjct: 420 TAHTSKALKVLRDKIVEPLRPLCVSVLDNDLESRKQLEEAVNHIVEQLSQGDARTLEEKA 479

Query: 125 LE---TPGGLK--VQTI 136
            +       LK  +QT+
Sbjct: 480 KDLSIQRSKLKREIQTL 496


>gi|67923682|ref|ZP_00517150.1| UvrD/REP helicase [Crocosphaera watsonii WH 8501]
 gi|67854482|gb|EAM49773.1| UvrD/REP helicase [Crocosphaera watsonii WH 8501]
          Length = 788

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 25/167 (14%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS-TLLCLTHTKAAAAEMSH 80
           +Q LAS       +SA  G+GK+H L      ++     HP   L+ +T+T++AAA +  
Sbjct: 31  QQQLASWTAGKMAISAVPGAGKSHSLAVAAAMMIAQYRLHPRKQLIIVTYTRSAAAGIKA 90

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT--ILETPGGLKVQTIHA 138
           ++ E +          +   +  +      ++      +L  +  I+ TP          
Sbjct: 91  KIKERLKELKIPQTGFMVQTLHGLALNIATRNPDLSQLNLETSTVIIPTPS--------- 141

Query: 139 FCEAIMQQFPLEANITSHFAIA---------DEEQSKKLIEEAKKST 176
               +++   +E  I+ +             D E++++L  ++   T
Sbjct: 142 --HRVIRS-SVEKWISGNPRRYQLLLEGAEFDGEETERLRRQSVLRT 185


>gi|319442810|ref|ZP_07991966.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
           DSM 44702]
          Length = 1151

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 33/67 (49%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           +   R   V    G+GKT +L+  ++  L     P+ ++ +T +K AA ++  R+ +++ 
Sbjct: 84  APRDRPYAVLGAPGTGKTSLLLDALVTYLGNGGDPAGVMVVTPSKEAATDLRGRLTDLLC 143

Query: 88  AWSHLSD 94
             +   D
Sbjct: 144 DLAGDVD 150


>gi|20090983|ref|NP_617058.1| DNA helicase [Methanosarcina acetivorans C2A]
 gi|19916069|gb|AAM05538.1| DNA helicase [Methanosarcina acetivorans C2A]
          Length = 612

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 63/164 (38%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V A  G+GKT+ L   V  ++  ++     S + C+T+T  AA                 
Sbjct: 24  VIAGPGAGKTYWLTNHVKNVVKHSSRLNPVSKVACITYTNIAA----------------- 66

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA-IMQQFPLEA 151
                                      +L  + E    ++V TIH+F    I++ +    
Sbjct: 67  -------------------------EQVLNNLGECVDKVEVSTIHSFFYKNIIKPYA--- 98

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
                           L +E     +A   +D +EE   +F +I
Sbjct: 99  --------------SHLYDELGNQLIAVEKIDGHEEHNPSFKKI 128


>gi|229590611|ref|YP_002872730.1| putative helicase [Pseudomonas fluorescens SBW25]
 gi|229362477|emb|CAY49383.1| putative helicase [Pseudomonas fluorescens SBW25]
          Length = 815

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 65/234 (27%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           S  V A AG+GK+  LV R+L LL        S++  +T T+ +  +   ++++I + W 
Sbjct: 142 STSVIAGAGAGKSTSLVLRIL-LLTHYLGFELSSMTVVTFTRESRKDFISKLMQIFSVWG 200

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM------ 144
              D   +  +                               V+T H+    I+      
Sbjct: 201 QPIDMKEAQGV-------------------------------VRTFHS---RILPMVRSL 226

Query: 145 ----QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--------- 191
               +    E N+ + F  AD       I EA++  + +     + +  +          
Sbjct: 227 PGFERLQAFE-NLNTGFEDADSNPFDLRINEAQRQQMNACYHRLHGQHTRFRELIAPLAR 285

Query: 192 ----FYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEKS 237
                 E+     D      ++++ + R      +    +F +  W  K IE +
Sbjct: 286 HGLQLKELERDHPDVQKRVAVTELAAKRDEELCDVIEDLWFRAGAWPIKGIEPN 339


>gi|325963969|ref|YP_004241875.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470056|gb|ADX73741.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 1115

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ-RVLRLLLANAHPSTLLCLTHTKAAA 75
           +S  +   +  S  T    V    G+GKT +LV+  V R+      P  +L L  ++ +A
Sbjct: 62  LSPDQQAAVDVSQGTGPVLVPGAPGTGKTTVLVEAAVSRVFRDGVDPERMLILAPSRLSA 121

Query: 76  AEMSHRVLEIITA 88
             +  R    +  
Sbjct: 122 DALRDRFTARLDR 134


>gi|307544596|ref|YP_003897075.1| UvrD/REP helicase [Halomonas elongata DSM 2581]
 gi|307216620|emb|CBV41890.1| UvrD/REP helicase [Halomonas elongata DSM 2581]
          Length = 732

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 44  KTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           KT  LV RVLRLL     P+ LL L   ++A  +   R+  +  A   L D      +  
Sbjct: 28  KTTTLVARVLRLLERGVDPTRLLVLMFNRSAREDFQTRLTAMAPAGQRLPDVRTFHSLGH 87

Query: 104 IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
              +   +  +   R LL    +              E +++Q  L A
Sbjct: 88  RLSQSLTRWGVLAPRQLLTADWQL-------------ERLLRQASLNA 122


>gi|77458897|ref|YP_348403.1| UvrD/REP helicase [Pseudomonas fluorescens Pf0-1]
 gi|77382900|gb|ABA74413.1| putative helicase [Pseudomonas fluorescens Pf0-1]
          Length = 824

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 27/217 (12%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           S  V A AG+GK+  LV R+L LL         ++  +T T+ +  +  ++++E+   W 
Sbjct: 142 STSVIAGAGAGKSTTLVLRIL-LLTHYLGFELDSMTVVTFTRESRKDFINKLIELFALWG 200

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
               +  + ++ +    +      S      +   E          H       +    +
Sbjct: 201 RALSQKDARDLVRTFHSRILPMVRSLPGFERLQAFENLS-------H-------RAPGAD 246

Query: 151 ANITSH-FAIADEEQSKKLIEEAKKSTLAS-----IMLDNNEELKKAFYEILEISNDEDI 204
            ++ S+ F +   +  ++ +                ++           E+     D   
Sbjct: 247 EDVDSNPFDLRINDAQRQQLNACYHRLYKEDPRFAQLIQPLSRHALQLKELERDHPDVQK 306

Query: 205 ETLISDIISNRT----ALKLIFFFFSYLWRRKIIEKS 237
              ++++ + R      +    +  +  W  K IE S
Sbjct: 307 RVAVTELAARRDEELCDMIEDMWLRAGAWPIKGIEPS 343


>gi|312794624|ref|YP_004027547.1| lexa repressor [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181764|gb|ADQ41934.1| LexA repressor [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 819

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
          + ++L  + P     V   AGSGKT + + RV+ LL     A    +L +T  K
Sbjct: 6  EQKKLSQAKPNGHMLVKGVAGSGKTTVAIYRVVYLLNEYCFAPDDKILMVTFNK 59


>gi|126640434|ref|YP_001083418.1| exonuclease V beta chain [Acinetobacter baumannii ATCC 17978]
 gi|126386318|gb|ABO10816.1| exonuclease V beta chain [Acinetobacter baumannii ATCC 17978]
          Length = 131

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM-------------SKARHLLIT 123
           E+  R+   +       D   S    +I  +   +SD+             + A   L  
Sbjct: 26  ELKSRIRARLVETHRYLDAKRSLTEKEILLQAEQESDLLLQHILKHFATRIAYACERLKL 85

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
           +++    L V T+ +F + ++++F  E+ 
Sbjct: 86  VIDQLDELFVGTLDSFSQKLLREFAFESG 114


>gi|312877108|ref|ZP_07737079.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796082|gb|EFR12440.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 578

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
          + ++L  + P     V   AGSGKT + + RV+ LL     A    +L +T  K
Sbjct: 6  EQKKLSQAKPNGHVLVKGVAGSGKTTVAIYRVVYLLNEYCFAPDDKILMVTFNK 59


>gi|237808366|ref|YP_002892806.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237500627|gb|ACQ93220.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 585

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69
          +E +D ++ +  E           ++ A  GSGKT ++  +V + + +   +P  L  L+
Sbjct: 7  NEQLDYVNSSIEE---------HTFLEACPGSGKTEVVAAKVAKEIGSWKNNPGGLAALS 57

Query: 70 HTKAAAAEMSHRVLEII 86
             +A  E++ RV + I
Sbjct: 58 FANSATDELTIRVSKYI 74


>gi|312960989|ref|ZP_07775494.1| UvrD/REP helicase [Pseudomonas fluorescens WH6]
 gi|311284647|gb|EFQ63223.1| UvrD/REP helicase [Pseudomonas fluorescens WH6]
          Length = 815

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 86/259 (33%), Gaps = 66/259 (25%)

Query: 9   EHSETIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTL 65
           + +  +   +Q  + Q  +    T S  V A AG+GK+  LV R+L LL        S++
Sbjct: 117 DVARLLPAHAQPSAAQWKMIFSDTPSTSVIAGAGAGKSTSLVLRIL-LLTHYLGFELSSM 175

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
             +T T+                    S +   +++ +I         + +A  +     
Sbjct: 176 TVVTFTR-------------------ESRKDFISKLMEILNLWGQPLALKEAEAV----- 211

Query: 126 ETPGGLKVQTIHAFCEAIM----------QQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
                  V+T H+    I+          +    E N+ S F  AD       I +A++ 
Sbjct: 212 -------VRTFHS---RILPMVRSLPGFERLQAFE-NLNSGFEGADSNPFDLRINDAQRQ 260

Query: 176 TLASIM---LDNNEELKKAFY----------EILEISNDEDIETLISDIISNRT----AL 218
            + +        +   ++             E+     D      ++++ + R      +
Sbjct: 261 QMNACYHRLHGRHPRFRELIAPLARHGLQLKELERDHPDVQKRMAVTELAAKRDEELCDV 320

Query: 219 KLIFFFFSYLWRRKIIEKS 237
               +F +  W  K IE +
Sbjct: 321 IEDLWFRAGAWPIKGIEPN 339


>gi|222528077|ref|YP_002571959.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725]
 gi|222454924|gb|ACM59186.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725]
          Length = 819

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
          + ++L  + P     V   AGSGKT + + RV+ LL     A    +L +T  K
Sbjct: 6  EQKKLSQAKPNGHMLVKGVAGSGKTTVAIYRVVYLLNEYCFAPDDKILMVTFNK 59


>gi|197286323|ref|YP_002152195.1| DNA helicase [Proteus mirabilis HI4320]
 gi|194683810|emb|CAR44885.1| putative DNA helicase [Proteus mirabilis HI4320]
          Length = 711

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL---LLANAHPSTLLCLTHTKAAAAEM 78
             +L+A +      V   AG+GKT + + R + L   L+       +L  T TK  A+++
Sbjct: 254 QRKLVALEAKGPTRVLGGAGTGKTVVAMHRAVHLAKKLILEQSNRKILLTTFTKNLASDI 313

Query: 79  SHRVLEI 85
              + +I
Sbjct: 314 KANIKKI 320


>gi|4688684|emb|CAB41433.1| helicase II [Escherichia coli]
 gi|4688686|emb|CAB41434.1| helicase II [Escherichia coli]
 gi|4688690|emb|CAB41436.1| helicase II [Escherichia coli]
 gi|4688692|emb|CAB41437.1| helicase II [Escherichia coli]
 gi|4688694|emb|CAB41438.1| helicase II [Escherichia coli]
 gi|4688696|emb|CAB41439.1| helicase II [Escherichia coli]
 gi|4688698|emb|CAB41440.1| helicase II [Escherichia coli]
 gi|4688700|emb|CAB41441.1| helicase II [Escherichia coli]
 gi|4688702|emb|CAB41442.1| helicase II [Escherichia coli]
 gi|4688704|emb|CAB41443.1| helicase II [Escherichia coli]
 gi|4688790|emb|CAB41381.1| helicase II [Escherichia coli]
 gi|4688792|emb|CAB41382.1| helicase II [Escherichia coli]
 gi|4688794|emb|CAB41383.1| helicase II [Escherichia coli]
 gi|4688796|emb|CAB41384.1| helicase II [Escherichia coli]
 gi|4688798|emb|CAB41385.1| helicase II [Escherichia coli]
 gi|4688800|emb|CAB41386.1| helicase II [Escherichia coli]
 gi|4688802|emb|CAB41387.1| helicase II [Escherichia coli]
 gi|4688804|emb|CAB41388.1| helicase II [Escherichia coli]
 gi|4688806|emb|CAB41389.1| helicase II [Escherichia coli]
 gi|4688808|emb|CAB41390.1| helicase II [Escherichia coli]
 gi|4688810|emb|CAB41391.1| helicase II [Escherichia coli]
 gi|4688812|emb|CAB41392.1| helicase II [Escherichia coli]
 gi|4688814|emb|CAB41393.1| helicase II [Escherichia coli]
 gi|4688816|emb|CAB41394.1| helicase II [Escherichia coli]
 gi|4688818|emb|CAB41395.1| helicase II [Escherichia coli]
 gi|4688820|emb|CAB41396.1| helicase II [Escherichia coli]
 gi|7838185|emb|CAB91633.1| helicase II [Escherichia coli]
 gi|7838189|emb|CAB91635.1| helicase II [Escherichia coli]
 gi|7838191|emb|CAB91636.1| helicase II [Escherichia coli]
          Length = 124

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
             +++   ++AN+   F I D E   +L+    K  + ++ LD  +   +     +    
Sbjct: 1   HRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQK 56

Query: 201 DEDIE 205
           DE + 
Sbjct: 57  DEGLR 61


>gi|307152601|ref|YP_003887985.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
 gi|306982829|gb|ADN14710.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
          Length = 784

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 42/162 (25%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMS 79
           ++ LA        VSA  G+GK+H L      L +A         L+ +T+T++AA+ + 
Sbjct: 26  QRSLADWKGGRMAVSAVPGAGKSHSLSV-AAALAIAGYQLHARKQLVIVTYTRSAASSIK 84

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++ E +                                           G  VQT+H  
Sbjct: 85  TKIRERLKELKLPQ-----------------------------------SGFTVQTLHGL 109

Query: 140 CEAIMQQFPLE--ANITSHFAIADEEQSKKLIEEAKKSTLAS 179
              I  + P     N+ +   I     S ++I    +  +AS
Sbjct: 110 ALQIATRHPDLSALNLDTS-TIIIPTPSHRIIRACVEQWIAS 150


>gi|239917998|ref|YP_002957556.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|281415826|ref|ZP_06247568.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|239839205|gb|ACS31002.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
          Length = 1145

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 15  DLISQTKSEQLLAS-DPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           D I+ T  ++ +AS  P      V    G+G+T + V+   R + A   P +LL L  ++
Sbjct: 32  DRITLTDEQEAIASLAPGHGPVLVLGAPGTGRTTVAVEYAARRIEAGLDPESLLLLAPSR 91

Query: 73  AAAAEMSHRVLEIITAWSH 91
            AAA +   +   + A   
Sbjct: 92  DAAARLRDALTRRLAAAGR 110


>gi|330859638|emb|CBX69977.1| hypothetical protein YEW_GY30500 [Yersinia enterocolitica W22703]
          Length = 283

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 105 QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
           Q       D+S+A   L+          + TIH FC+ ++     E+ I   F     + 
Sbjct: 3   QALLAEIIDLSEAATDLLAAERQMDEAAIYTIHGFCQRMLANNAFESGI--LFEQTLVQD 60

Query: 165 SKKLIEEAKKSTLAS 179
              L  +A       
Sbjct: 61  ELPLRRQACADFWRR 75


>gi|26989285|ref|NP_744710.1| UvrD/REP helicase [Pseudomonas putida KT2440]
 gi|24984135|gb|AAN68174.1|AE016450_4 helicase, putative [Pseudomonas putida KT2440]
          Length = 714

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMS 79
           ++  L    T S  V A AG+GK+  LV R+L LL          +  +T T+ +  +  
Sbjct: 22  AQWKLIFSDTPSTCVVAGAGAGKSTSLVLRIL-LLRHYLGYELDAMTVVTFTRESRKDFI 80

Query: 80  HRVLEIITAWSHLSDEILSAEITK 103
            R+L++   W      + + E+ +
Sbjct: 81  KRLLQVFALWQINLQPVQARELVR 104


>gi|170097065|ref|XP_001879752.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645155|gb|EDR09403.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 829

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +D +++++   +      R + V    G+GKT  +++ +  L +    P  +L  T+T  
Sbjct: 297 LDGLNRSQIRAVATMIKHRLSLVQGPPGTGKTKTIIETIKLLKVHFEIPHPILVCTYTNV 356

Query: 74  AAAEMSH----------RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           A   +            RV    +    L    L  ++ + + +K  K+ + +   L + 
Sbjct: 357 AVDNLVEGLVNAGVKALRVGFGGSIKESLRPHSLDTKLEEHRLQKTLKAQIKEKDDLQVK 416

Query: 124 ILETPGGLK 132
           + +    L+
Sbjct: 417 MDDLEARLR 425


>gi|300798295|ref|NP_001179318.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Bos taurus]
 gi|297484475|ref|XP_002694322.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like [Bos
           taurus]
 gi|296478913|gb|DAA21028.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like [Bos taurus]
          Length = 620

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 23/161 (14%)

Query: 36  VSANA--GSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V A+A  GSGKT   L+  +LR L  +  PS  L LT T+    E++ ++          
Sbjct: 244 VLASADTGSGKTAAFLLPVILRALSQSKSPSG-LVLTPTR----ELAIQIERQAKELMSG 298

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
              + +A +    G  P      + R  +  I+ TPG L           I++Q  +E  
Sbjct: 299 LPCLRTALLV---GGLPAPPQRHRLRQRIQVIIATPGRL---------LDIIKQRSVELG 346

Query: 153 ITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKA 191
            +    + DE  +   +  ++     L  +  D    L  A
Sbjct: 347 -SIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDCQTVLASA 386


>gi|119511881|ref|ZP_01630980.1| UvrD/REP helicase [Nodularia spumigena CCY9414]
 gi|119463449|gb|EAW44387.1| UvrD/REP helicase [Nodularia spumigena CCY9414]
          Length = 811

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 46/179 (25%)

Query: 12  ETIDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVL------RLLLANAHPST 64
           + +D+ +  +  +Q +A        VSA  G+GK+  +   V         + A + PS+
Sbjct: 22  KILDIRNSLRPGQQQMADWQFGPLAVSAVPGAGKSTGMAAAVAIAIARQYQISAESRPSS 81

Query: 65  ---LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
              ++ +T T++A+A +  ++   +   S                               
Sbjct: 82  RRHIVVVTFTRSASANIKLKIRGYLKDLSLP----------------------------- 112

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179
                 P G  V T+H     I  + P  + +   +  +    QS + I  A +  + +
Sbjct: 113 ------PTGFAVYTLHGLALNIASRHPNLSGLELENVTLITPNQSHRFIRTAVEQWINN 165


>gi|302524414|ref|ZP_07276756.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
 gi|302433309|gb|EFL05125.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
          Length = 1057

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 29/175 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     + L S P     V    G+GKT +L     R +   A P ++L LT ++ AA  
Sbjct: 12  TWDDDARRLLSAPAGFRRVLGGPGTGKTALLATAAARRIAEGADPESVLLLTTSRRAA-- 69

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                            + L A++T+     P++            +  T     V+T+H
Sbjct: 70  -----------------DALRADLTRRLTSDPDQESP---------LPRTVSEPLVRTVH 103

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           ++  ++++       +     +    +   ++ E  +  L        E+L+ A 
Sbjct: 104 SYAFSLLRLEARAEELPP-PRLLAGAEQDVVVRELLEGDLEEGATSWPEQLRPAL 157


>gi|118367230|ref|XP_001016830.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89298597|gb|EAR96585.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 829

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
          T  +      P  R   V+A AGSGKT   +Q +   +     P ++   T    A+ +M
Sbjct: 20 TDEQLKFILAPKNRDIKVTACAGSGKTECALQFIKSAIDEGQDPRSISITTFNIQASVDM 79

Query: 79 SHRVLEIITAWSHLSDEILS 98
            R ++++   +    EI++
Sbjct: 80 KKRAIQLMGKENANKIEIIN 99


>gi|313499355|gb|ADR60721.1| UvrD/REP helicase [Pseudomonas putida BIRD-1]
          Length = 823

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 30/229 (13%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMS 79
           ++  L    T S  V A AG+GK+  LV R+L LL          +  +T T+ +  +  
Sbjct: 131 AQWKLIFSDTPSTCVVAGAGAGKSTSLVLRIL-LLRHYLGYELDAMTVVTFTRESRKDFI 189

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            R+L++   W      + + E+ +    +      S      +   ET G          
Sbjct: 190 KRLLQVFALWQINLQPVQARELVRTFHSRILPLVRSLPGFGQVRAFETLG---------- 239

Query: 140 CEAIMQQFP--LEANITSH-FAIADEEQSKKLIEEAKKSTLASI--MLDNNEELKKAFYE 194
                 + P   EA   S+ F +   +  ++ + +   S L       +   +L+    +
Sbjct: 240 -----HEMPAGREAEADSNPFDLRLNDAQRQQLNQCYSSLLDESPRFAELVGQLRSEALQ 294

Query: 195 I--LEISN-DEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
           +  L+ +N D      ++ + + R      +    +F + +W  K IE 
Sbjct: 295 LKPLDPNNPDVQKRAQVTQLAAQRDEELCDVIEDLWFAAGVWPIKGIEP 343


>gi|229002237|dbj|BAH57703.1| hypothetical protein [Staphylococcus aureus]
 gi|238768523|dbj|BAH66835.1| DNA helicase [Staphylococcus aureus]
          Length = 591

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 44/107 (41%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + A  G+GKT  LV  +  ++  +        + C+T+T  AA  +  R+ + ++     
Sbjct: 26  IQAGPGAGKTEFLVNHIKNVIQTSEKLERMKKIACITYTNTAAQTVLQRLGKSVS----- 80

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                                                 + + TIH+F
Sbjct: 81  ------------------------------------NRVDISTIHSF 91


>gi|296270990|ref|YP_003653622.1| UvrD/REP family ATP-dependent DNA helicase [Thermobispora bispora
           DSM 43833]
 gi|296093777|gb|ADG89729.1| ATP-dependent DNA helicase, UvrD/REP family [Thermobispora bispora
           DSM 43833]
          Length = 687

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
                V+  AGSGK+   + R   L  A A P  +L +T ++  AAEMS R+  I+    
Sbjct: 253 DTPVLVTGGAGSGKSVTALHRAAVLARAGAGP--VLLVTFSQGLAAEMSRRLDMILGGDD 310

Query: 91  HLSDEILSAEITKIQGKKPNKSD 113
                +    + ++  +   +++
Sbjct: 311 AARSRVEVMNVDRLAHRIVAEAE 333


>gi|289807124|ref|ZP_06537753.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 93

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +AA  E+  R+   I           S +           SD  +A   L+         
Sbjct: 1   EAATEELRGRIRSNIHELRIACLRE-STDNPLYARLLEEISDKKQAAQWLLLAERQMDEA 59

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163
            V TIH FC+ ++     E+ +     + ++E
Sbjct: 60  AVFTIHGFCQRMLSLNAFESGMLFEQQLIEDE 91


>gi|153000395|ref|YP_001366076.1| hypothetical protein Shew185_1870 [Shewanella baltica OS185]
 gi|151365013|gb|ABS08013.1| conserved hypothetical protein [Shewanella baltica OS185]
          Length = 484

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           A AG+GKTH L +++++     +    +  +T+T  AA  +S  +++   
Sbjct: 6  IAGAGAGKTHGLAEKIIKH-YDASSYKKIFAITYTNNAAKNISEAIIKQFG 55


>gi|52549661|gb|AAU83510.1| hypothetical protein GZ29E12_22 [uncultured archaeon GZfos29E12]
          Length = 80

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 34 AWVSANAGSGK-THILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            V A AGSGK T +L+ +  +L+ +    P+ +L L+ ++ +A ++  ++ + +
Sbjct: 24 ICVIAGAGSGKTTKVLIPKAKQLIEVDEIEPNKILLLSFSRLSAIDLQRKIKKSV 78


>gi|148548360|ref|YP_001268462.1| UvrD/REP helicase [Pseudomonas putida F1]
 gi|148512418|gb|ABQ79278.1| UvrD/REP helicase [Pseudomonas putida F1]
          Length = 834

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMS 79
           ++  L    T S  V A AG+GK+  LV R+L LL          +  +T T+ +  +  
Sbjct: 142 AQWKLIFSDTPSTCVVAGAGAGKSTSLVLRIL-LLRHYLGYELDAMTVVTFTRESRKDFI 200

Query: 80  HRVLEIITAWSHLSDEILSAEITK 103
            R+L++   W        + E+ +
Sbjct: 201 KRLLQVFALWQINLQPAQARELVR 224


>gi|160876488|ref|YP_001555804.1| hypothetical protein Sbal195_3382 [Shewanella baltica OS195]
 gi|160862010|gb|ABX50544.1| conserved hypothetical protein [Shewanella baltica OS195]
 gi|315268680|gb|ADT95533.1| UvrD/REP helicase [Shewanella baltica OS678]
          Length = 484

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           A AG+GKTH L +++++     +    +  +T+T  AA  +S  +++   
Sbjct: 6  IAGAGAGKTHGLAEKIIKH-YDASSYKKIFAITYTNNAAKNISEAIIKQFG 55


>gi|154302786|ref|XP_001551802.1| hypothetical protein BC1G_09508 [Botryotinia fuckeliana B05.10]
 gi|150855255|gb|EDN30447.1| hypothetical protein BC1G_09508 [Botryotinia fuckeliana B05.10]
          Length = 842

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 16  LISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           L+  +  +Q+         ++  V A AGSGKT  ++      L  +A  +  L L + +
Sbjct: 82  LLPPSPEQQIAIDTLLHTKKNIIVDACAGSGKTTTILH-----LAQSAPDTRFLVLVYNR 136

Query: 73  AAAAEMSHRVLEI 85
               E   R+ ++
Sbjct: 137 RLMLETKQRIEDL 149


>gi|325277621|ref|ZP_08143202.1| UvrD/REP helicase [Pseudomonas sp. TJI-51]
 gi|324097241|gb|EGB95506.1| UvrD/REP helicase [Pseudomonas sp. TJI-51]
          Length = 823

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMS 79
           ++  L    T S  V A AG+GK+  LV R+L LL          +  +T T+ +  +  
Sbjct: 131 AQWKLIFSDTPSTCVVAGAGAGKSTSLVLRIL-LLRHYLGYELDAMTVVTFTRESRKDFI 189

Query: 80  HRVLEIITAWSHLSDEILSAEITK 103
            R+L++   W        + E+ +
Sbjct: 190 KRLLQVFALWQINLQPAQARELVR 213


>gi|167034300|ref|YP_001669531.1| UvrD/REP helicase [Pseudomonas putida GB-1]
 gi|166860788|gb|ABY99195.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 814

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMS 79
           ++  L    T S  V A AG+GK+  LV R+L LL          +  +T T+ +  +  
Sbjct: 122 AQWKLIFSDTPSTCVVAGAGAGKSTSLVLRIL-LLRHYLGYELDAMTVVTFTRESRKDFI 180

Query: 80  HRVLEIITAWSHLSDEILSAEITK 103
            R+L++   W      + + E+ +
Sbjct: 181 KRLLQVFALWQINLQPVQARELVR 204


>gi|330807451|ref|YP_004351913.1| Hypothetical protein PSEBR_a747 [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327375559|gb|AEA66909.1| Hypothetical protein PSEBR_a747 [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
          Length = 624

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVL--------RLLLANAHPSTLLCLTHTKAAAAEMSH 80
          D  +S ++ A AGSGKT  LV  +         RL         +  +T+T AA+ E+  
Sbjct: 28 DDPQSFFLFAGAGSGKTRSLVTALKKVQIDFGSRLRFKG---QRVGVITYTNAASEEIER 84

Query: 81 RV 82
          R+
Sbjct: 85 RL 86


>gi|73670049|ref|YP_306064.1| hypothetical protein Mbar_A2573 [Methanosarcina barkeri str.
          Fusaro]
 gi|72397211|gb|AAZ71484.1| hypothetical protein Mbar_A2573 [Methanosarcina barkeri str.
          Fusaro]
          Length = 260

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            +      V A AGSGKT ++  ++  LL    ++   +  ++ T  A  E+  ++ + 
Sbjct: 15 ILEKDGVFVVKACAGSGKTCVVAAKISSLLRKWESNNRGIAAISFTNVAWQEIEDKLKKD 74

Query: 86 ITAWSHLS 93
              S L 
Sbjct: 75 FGVDSGLD 82


>gi|289674806|ref|ZP_06495696.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           syringae FF5]
          Length = 79

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARH 119
           P  +L +T T AA  E+  R+   +   +    + ++A   +     ++   S       
Sbjct: 3   PPQILVVTFTDAATKELRDRIRTRLAEAARFFRDEIAAPDGLIAELREQFEASLWPACAS 62

Query: 120 LLITILETPGGLKVQTI 136
            L    +      V TI
Sbjct: 63  RLDIAAQWMDEAAVSTI 79


>gi|307111214|gb|EFN59449.1| hypothetical protein CHLNCDRAFT_56762 [Chlorella variabilis]
          Length = 922

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 41/143 (28%)

Query: 48  LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK 107
           +  R   LL        +L LT ++ AA E   R+L  +                     
Sbjct: 1   MTGRARFLLGQGVAAEEVLVLTLSRKAAGEFRERLLRHVPGAK----------------- 43

Query: 108 KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA--DEEQS 165
                                    V T H++   ++ +   EA       I   ++++ 
Sbjct: 44  ----------------------AATVCTFHSWSWMVVWRHWREAGFERRPTILAAEQQEL 81

Query: 166 KKLIEEAKKSTLASIMLDNNEEL 188
             + +      LA+   +    L
Sbjct: 82  ALMRDCIMWDQLAAAQAEMRGWL 104


>gi|284053307|ref|ZP_06383517.1| ATP-dependent DNA helicase Rep [Arthrospira platensis str. Paraca]
          Length = 680

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           L + T H+ C  I++    ++  E       +F+I DE     L+++    TL   + D 
Sbjct: 15  LWMGTFHSLCARILRYDINKYQDEKGRQWKPNFSIFDESDVLALVKQIVTKTLN--LDDK 72

Query: 185 NEELKKAFYEILEISN 200
             + +K  Y+I    N
Sbjct: 73  KFDPRKTRYKISNAKN 88


>gi|269959490|ref|ZP_06173873.1| ATP-dependent DNA helicase Rep [Vibrio harveyi 1DA3]
 gi|269835927|gb|EEZ90003.1| ATP-dependent DNA helicase Rep [Vibrio harveyi 1DA3]
          Length = 609

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189
           GL V T H     I+++      + + F++ D++    L++E  +  L      + + L+
Sbjct: 16  GLMVSTFHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKELTEKQLD----GDKDLLR 71

Query: 190 KAFYEILEISND 201
           +    I    ND
Sbjct: 72  QLLSSISNWKND 83


>gi|329928677|ref|ZP_08282528.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
 gi|328937573|gb|EGG33989.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
          Length = 628

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRV 82
          +       +  +SA  G+GKT +L Q+   LL  N    P  LL L++   AA  +  RV
Sbjct: 23 IRIIKSEVNTLISAGPGAGKTELLAQKASFLLTTNKLIFPRQLLALSYKVDAAKNLEERV 82

Query: 83 LEIITA 88
                
Sbjct: 83 HVRCGE 88


>gi|262198309|ref|YP_003269518.1| exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
 gi|262081656|gb|ACY17625.1| Exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
          Length = 749

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 10/146 (6%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +S  ++  + A+   R   +S   G+GKT I+V  +  L      P + L    T  AA 
Sbjct: 264 LSDEQAAAVRAATRQRFCVISGGPGTGKTAIVVTILRTLARLGESPESALLAAPTGKAAN 323

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT- 135
            M   +   + A     D +    + +    +     +     L          L+ +T 
Sbjct: 324 RMGSSIRSALLA-VPDPDPVDRQLLERASEPQTLHRLLGYVPVLDRFRQHENNPLRARTV 382

Query: 136 -------IHA-FCEAIMQQFPLEANI 153
                  I A   E +++  P E  +
Sbjct: 383 IVDEASMIDAELMERLLRAVPSETRL 408


>gi|256375103|ref|YP_003098763.1| hypothetical protein Amir_0958 [Actinosynnema mirum DSM 43827]
 gi|255919406|gb|ACU34917.1| protein of unknown function DUF450 [Actinosynnema mirum DSM 43827]
          Length = 1067

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 83/231 (35%), Gaps = 42/231 (18%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRL-------------LLANAHP-----STLLCLT 69
             +    A+AGSGK++    L  R+  L             L A   P       ++ +T
Sbjct: 304 GHNYLCMASAGSGKSNTIGWLAHRLSSLHTPTDPAEIDPDELSAGLEPGTPVFDKVVIIT 363

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
                         +     S L + + S E T     K +    +K+  L   +   PG
Sbjct: 364 --------------DRRNLDSQLRETVGSFEQTAGLVVKIDDKHGAKSDQLARALSREPG 409

Query: 130 GLKVQTIHAFCEAI--MQQFPLEANITSHFAIA-DEEQSKKLIEE--AKKSTLASIMLDN 184
            +   T+H F   +  +++ P+E    S+FAI  DE  S +  +   A ++ L  + LD 
Sbjct: 410 KIITVTLHTFPALLDYLRRNPIEIK-GSNFAIIVDEAHSSQSGDAATAVRAALRDLGLDA 468

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           + +   A     +  N      L         A  L +F F+   + K +E
Sbjct: 469 DSDDAGAVTAQADQ-NAATDAKLRRKAHQRGQAANLSYFAFTATPKAKTLE 518


>gi|104782073|ref|YP_608571.1| UvrD/Rep family helicase [Pseudomonas entomophila L48]
 gi|95111060|emb|CAK15780.1| putative helicase; UvrD/REP family [Pseudomonas entomophila L48]
          Length = 834

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMS 79
           ++  L    T S  V A AG+GK+  LV R+L LL          +  +T T+ +  +  
Sbjct: 142 AQWKLIFSDTPSTCVVAGAGAGKSTSLVLRIL-LLRHYLGFELDAMTVVTFTRESRKDFI 200

Query: 80  HRVLEIITAWSHLSDEILSAEITK 103
            R+L++   W          E+ +
Sbjct: 201 QRLLQVFALWQIELSPAQGRELVR 224


>gi|254489027|ref|ZP_05102232.1| DNA helicase II [Roseobacter sp. GAI101]
 gi|214045896|gb|EEB86534.1| DNA helicase II [Roseobacter sp. GAI101]
          Length = 613

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 14/101 (13%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPSTLLCLTHTKAAAAEMSHRVL- 83
             S  V A AGSGKT  L++  L+ +             +++C+T+T  A   +S R+  
Sbjct: 20  ETSFAVIAGAGSGKTTSLIE-ALKKIRETQGRQLRERGQSVVCITYTNRAVDVISSRLEF 78

Query: 84  ------EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
                   +  +         A + +   +    + + KA+
Sbjct: 79  DELYTVTTLHGFLWGEVSRFQAPLREALAEHVIPAHIEKAQ 119


>gi|326385179|ref|ZP_08206846.1| Superfamily I DNA and RNA helicase-like protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326196083|gb|EGD53290.1| Superfamily I DNA and RNA helicase-like protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 337

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74
          +    S++ +   P      VS  AG GK+ ++  R++ LL++    S  +L L+ ++AA
Sbjct: 1  MELDPSQRRVTHAPHEERLLVSVGAGQGKSEVVAARLVNLLVSGLSASTEILVLSFSRAA 60

Query: 75 AAEMSH 80
             + +
Sbjct: 61 VHVIRN 66


>gi|330809864|ref|YP_004354326.1| putative UvrD/REP helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377972|gb|AEA69322.1| putative UvrD/REP helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 823

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 51/210 (24%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           S  V A AG+GK+  LV R++ LL         ++  +T T+ +  +   +++E+   W 
Sbjct: 142 STSVVAGAGAGKSTTLVLRIV-LLSHYLGFELDSMTVVTFTRESRKDFIQKLIEVFALWG 200

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
                                  + +AR L            V+T H+    I+   P+ 
Sbjct: 201 R-------------------TVSLKEARDL------------VRTFHS---RIL---PMV 223

Query: 151 ANITSHFAIADEEQSKKLIEEAKKS------TLASIMLDNNEELKKAFYEILEISNDEDI 204
            ++   F      ++     EA             I     ++L   +Y + +   D   
Sbjct: 224 RSL-PGFERLQAFETLSHRAEAGDDDAQGNPFDLRINDAQRQQLNACYYNLYQ--RDARF 280

Query: 205 ETLISDIISNRTALKLIFFFFSYLWRRKII 234
             LI  +  +R AL+L      +   +K +
Sbjct: 281 RELILPL--SRHALQLKELERDHPDVQKRV 308


>gi|91216849|ref|ZP_01253813.1| hypothetical protein P700755_04927 [Psychroflexus torquis ATCC
          700755]
 gi|91185010|gb|EAS71389.1| hypothetical protein P700755_04927 [Psychroflexus torquis ATCC
          700755]
          Length = 49

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 43 GKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
          GKT     R +  +++   + S +LC+  T     E   RV +++  
Sbjct: 2  GKTKAFTSRFIYSVVVLGINSSHILCVAFTNKGVKETRKRVKKLVEK 48


>gi|41409399|ref|NP_962235.1| hypothetical protein MAP3301c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398230|gb|AAS05851.1| hypothetical protein MAP_3301c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 1044

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 33/161 (20%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             ++  +LA     +  V    G+GK+ +LV   +  + A  +P ++L LT         
Sbjct: 10  DAQAGAVLAPGVRGTVRVLGGPGTGKSSLLVDAAVAQIEAGVNPESVLLLT--------- 60

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                             L+  + +  G  P   +                   V+T+H 
Sbjct: 61  ------GSGRLPMAERSALTTALLRSAGAGPAVREPL-----------------VRTVHG 97

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +  A++++    A       +    +   +I E     LA 
Sbjct: 98  YAYAVLRRAAERAGEAP-PRLVTSAEQDAIIRELLAGDLAD 137


>gi|170722142|ref|YP_001749830.1| UvrD/REP helicase [Pseudomonas putida W619]
 gi|169760145|gb|ACA73461.1| UvrD/REP helicase [Pseudomonas putida W619]
          Length = 834

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMS 79
           ++  L    T S  V A AG+GK+  LV R+L LL          +  +T T+ +  +  
Sbjct: 142 AQWKLIFSDTPSTCVVAGAGAGKSTSLVLRIL-LLRHYLGYELDAMTVVTFTRESRKDFI 200

Query: 80  HRVLEIITAWSHLSDEILSAEITK 103
            R++++ + W      + + E+ +
Sbjct: 201 KRLVQVFSLWQLDLPPVRARELVR 224


>gi|206975723|ref|ZP_03236635.1| type I RM system R subunit [Bacillus cereus H3081.97]
 gi|206746185|gb|EDZ57580.1| type I RM system R subunit [Bacillus cereus H3081.97]
          Length = 995

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 54/234 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAA 76
            E +      ++  +  +AGSGKT+    L  R+ +L     +   S+++ +T       
Sbjct: 293 EEDVQVKSVGQNYLIQHSAGSGKTNSISWLAHRLAKLHDEGNNAVFSSVIVIT------- 345

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
               R          + D+ L   + +++ K      ++K  + L   +     + + T 
Sbjct: 346 ---DR---------RVLDKQLQDAVYQLEHKAGMVERINKDSNQLAKAIRGETRIIITT- 392

Query: 137 HAFCEAIMQQFPLEANITSHFA------IADEE-------QSKKLIEEAKKSTLASIMLD 183
                  +Q+FP      S F       I DE         S  L       TL     +
Sbjct: 393 -------LQKFPFIMEKVSDFDRKKYAVIIDEAHSSQGGKASTALTNILSDKTLEDAYEE 445

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           +          I E + D   E ++  I+ +     + FF F+   + K +EK 
Sbjct: 446 D---------RIAEENMDNLDEQIVETIMKSGKQDNISFFAFTATPKPKTLEKF 490


>gi|332030559|gb|EGI70247.1| Putative helicase MOV-10 [Acromyrmex echinatior]
          Length = 651

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 12  ETIDLISQTKSEQLLA-------SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           E I+   +    Q  A       +       +    G+GKT  LV+ + + ++       
Sbjct: 147 EWINTNIKKNKRQKQAVMKILNNTARPAPYIIFGPPGTGKTATLVEAICQ-IVRQYPMKN 205

Query: 65  LLCLTHTKAAAAEMSHRVLEII 86
           +L  T +  AA E++ R+++ I
Sbjct: 206 ILVCTLSNTAADEIAKRLIKNI 227


>gi|190572117|ref|YP_001969962.1| hypothetical protein Smlt0028 [Stenotrophomonas maltophilia K279a]
 gi|190010039|emb|CAQ43645.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 473

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 44/145 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           ++A AG GKT ++ + +     +   P  +L LTHT A    +  R              
Sbjct: 15  ITAPAGCGKTQLIAEALAS--HSGNRP--ILVLTHTNAGVTALRTR-------------- 56

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                    L          ++ TI  F   ++ +FP  +    
Sbjct: 57  -------------------------LKRAGVPSSAYRLSTIDGFAMRLIAKFPARSGHHP 91

Query: 156 HFAIADEEQSKK-LIEEAKKSTLAS 179
                +   S    I E+ +  L S
Sbjct: 92  QLLELNNAGSDYPAIRESFRQLLDS 116


>gi|238062918|ref|ZP_04607627.1| DNA helicase [Micromonospora sp. ATCC 39149]
 gi|237884729|gb|EEP73557.1| DNA helicase [Micromonospora sp. ATCC 39149]
          Length = 823

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 44/143 (30%), Gaps = 23/143 (16%)

Query: 22  SEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            EQL A D     R   + A AG+GKT  LV      L+A       L +   KA A E 
Sbjct: 7   EEQLAARDTFLAGRELALVAGAGTGKTSTLV------LMAGVTRKRGLYVAFNKAIADEA 60

Query: 79  SHRVLEII--TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
             R    +       L+   +     +   +         AR L I          +   
Sbjct: 61  RQRFGANVDCRTAHSLAHRAVGRNYQERLNRSARIPSKETARLLGIHQNLWVSSRPIT-- 118

Query: 137 HAFC---EAI----MQQFPLEAN 152
              C     +    +++F    +
Sbjct: 119 ---CGHQARLVMGMIRRFCYSTD 138


>gi|188585427|ref|YP_001916972.1| protein of unknown function DUF450 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350114|gb|ACB84384.1| protein of unknown function DUF450 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 1000

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 88/242 (36%), Gaps = 47/242 (19%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP- 62
           F  + +   + + T   Q     P ++  V  +AGSGK+     L  R+  L   N  P 
Sbjct: 275 FPRYHQLEAVFNITNDAQKRG--PGKNYLVQHSAGSGKSLTIGWLAHRLSNLHDDNNAPV 332

Query: 63  -STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
            ++++ +T           RV         + D+ L   I +I  ++     + +    L
Sbjct: 333 FNSVIVIT----------DRV---------VLDKQLQETIYQIDHQQGVVERIDRHSSQL 373

Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEA----NITSH--FAIADEEQSKKLIE--EAK 173
              LE    + + T        +Q+FP+       +       I DE  S +  +   A 
Sbjct: 374 KDALEKGKKIIITT--------LQKFPVILDEIKGLPERNYAVIVDEAHSSQTGKSARAV 425

Query: 174 KSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKI 233
           +  L++  L+  E+ ++   +  +       E +I  +        L FF F+   + K 
Sbjct: 426 REVLSAETLEEAEQRQQDIEDEFDPE-----EEIIKSMKKQGKQENLSFFAFTATPKAKT 480

Query: 234 IE 235
           +E
Sbjct: 481 LE 482


>gi|298492614|ref|YP_003722791.1| UvrD/REP helicase ['Nostoc azollae' 0708]
 gi|298234532|gb|ADI65668.1| UvrD/REP helicase ['Nostoc azollae' 0708]
          Length = 785

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 50/190 (26%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILV--------QRVLRLLLANAHPST-LLCLTHTKA 73
           ++ +A+  +    VSA  G+GK+  +         ++    L    +    L+ +T T++
Sbjct: 43  QKQMANWESGPLAVSAVPGAGKSTGMAAAAAIAIARQYQYSLTTGNNYRRQLVVVTFTRS 102

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAA +  ++ + +   S                                       G  V
Sbjct: 103 AAANLKLKIRDKLKKLSLPQT-----------------------------------GFAV 127

Query: 134 QTIHAFCEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
            T+H     I  ++P  + +   +  +    Q+ + I  A +  +       N EL +  
Sbjct: 128 YTLHGLALNIANRYPDLSGLQLENVTLITPNQTHRFIRAAVEQWITK-----NPELYRRL 182

Query: 193 YEILEISNDE 202
            E  +   +E
Sbjct: 183 LEGQKFDGEE 192


>gi|330503410|ref|YP_004380279.1| hypothetical protein MDS_2496 [Pseudomonas mendocina NK-01]
 gi|328917696|gb|AEB58527.1| hypothetical protein MDS_2496 [Pseudomonas mendocina NK-01]
          Length = 475

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 43/145 (29%), Gaps = 44/145 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           ++A AG GKT    Q +   L+A+     +L LTHT A                      
Sbjct: 15  ITAPAGCGKT----QLIAETLIAHTQSKPILVLTHTNA---------------------G 49

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           + +      +   PN                     +V TI  F   ++ +FP  +    
Sbjct: 50  VAALRARLRRAGVPN------------------SAYRVSTIDGFSMRLIAKFPARSGHNP 91

Query: 156 H-FAIADEEQSKKLIEEAKKSTLAS 179
               +         I EA    L +
Sbjct: 92  QILQLHQPNTDYPAIREAAMQLLQA 116


>gi|170030086|ref|XP_001842921.1| potentail helicase MOV-10 [Culex quinquefasciatus]
 gi|167865927|gb|EDS29310.1| potentail helicase MOV-10 [Culex quinquefasciatus]
          Length = 674

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 17  ISQTKSEQLLA------SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           ++  + +          +       +    G+GKT  LV+ + ++       S +L +  
Sbjct: 240 VASNQEQAEAIQSIVNGTSYPAPYLLFGPPGTGKTATLVEAIGQICKLKPS-SKILAMAT 298

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
           + AAA E++ R+L I+     L     S E  K
Sbjct: 299 SNAAANELTVRLLRILPEQRVLRFFAKSLEKKK 331


>gi|124022672|ref|YP_001016979.1| exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962958|gb|ABM77714.1| possible exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus
           marinus str. MIT 9303]
          Length = 576

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 7/123 (5%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLL 66
             H   +D ++  +   + A D      +S   G+GKT  +VQ + R +     P   + 
Sbjct: 129 SHHPALLDGLNPEQQAAVEAIDNHGVVLLSGGPGTGKTSTIVQMLARAVT--LRPGLRIG 186

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILS----AEITKIQGKKPNKSDMSKARHLLI 122
               T  AA  +   V + + A      + L+    + + +    +P      +   L++
Sbjct: 187 LAAPTGKAARRLEEAVRKGLEAIPPTQRQALTSLPCSTLHRWLQARPGGFGRHQQHPLML 246

Query: 123 TIL 125
            +L
Sbjct: 247 DLL 249


>gi|118466579|ref|YP_883296.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104]
 gi|118167866|gb|ABK68763.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104]
          Length = 1042

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 33/161 (20%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             ++  +LA     +  V    G+GK+ +LV   +  + A  +P ++L LT         
Sbjct: 6   DAQAGAVLAPGAHGTVRVLGGPGTGKSSLLVDAAVAQIEAGVNPESVLLLT--------- 56

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                             L+  + +  G  P   +                   V+T+H 
Sbjct: 57  ------GSGRLPMAERSALTTALLRSAGAGPAVREPL-----------------VRTVHG 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +  A++++    A       +    +   +I E     LA 
Sbjct: 94  YAYAVLRRAAERAGEAP-PRLVTSAEQDAIIRELLAGDLAD 133


>gi|156743984|ref|YP_001434113.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156235312|gb|ABU60095.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 697

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 64/229 (27%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L+  T  ++ L + D      V    G+GK+ + + RV RLL      +++L  T+T A 
Sbjct: 221 LLRLTPDQERLVNQDRRGPILVRGGPGTGKSTLALYRVQRLLEQGV--TSVLFTTYTNA- 277

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
                      + A+S          +T++ G  P+                   G+KV 
Sbjct: 278 -----------LVAYS-------EQLLTRLLGASPDTR-----------------GVKVT 302

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-------------KKSTLASIM 181
           T+ +        F   A       +A E Q+  L+ +A             +++ L  + 
Sbjct: 303 TVDSL------AFHYFARGWGSPRLATEGQATALLMDALANADIPAADAHERRAALERLG 356

Query: 182 LDNNEELKKAFYEILEISNDEDIETLIS-DIISNRTALKLIFFFFSYLW 229
            +    L + F  ++E  N   +E  ++ +    R  LK        LW
Sbjct: 357 AEY---LLQEFLHVIEARNINSLEEYLAVERHGRRMPLK--PALREALW 400


>gi|313200888|ref|YP_004039546.1| ATP-dependent DNA helicase pcra [Methylovorus sp. MP688]
 gi|312440204|gb|ADQ84310.1| ATP-dependent DNA helicase PcrA [Methylovorus sp. MP688]
          Length = 648

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 73/209 (34%), Gaps = 54/209 (25%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLE 84
           P RS  + A AGSGKT  L++ +   +  +          + C+T+T+ AA E+      
Sbjct: 24  PPRSFIMKAGAGSGKTTSLIKGLSSAIQIHGEKLKKARQRIACITYTEIAAGEI------ 77

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
               W  +  + L                                 + V TIH+F   + 
Sbjct: 78  ----WRDVGSDPL---------------------------------VHVSTIHSFMWLLA 100

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDED 203
           + F  +  +     IA++ ++    + +    +     D +  +L++   +   I+  + 
Sbjct: 101 KPFQNDIRVWVSARIAEKIEALVQKQASYGPRVQQRTKDKDARDLERLHRQSGRIAAVKG 160

Query: 204 IE-----TLISDIISNRTALKLIFFFFSY 227
                    +  I+ +   L+L+ +  + 
Sbjct: 161 FRYGTGSDYVKGILGHDDILRLVPYLIAE 189


>gi|241889444|ref|ZP_04776745.1| DNA-dependent ATPase I and helicase II [Gemella haemolysans ATCC
          10379]
 gi|241863987|gb|EER68368.1| DNA-dependent ATPase I and helicase II [Gemella haemolysans ATCC
          10379]
          Length = 64

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           K ++           V A  G+GKT IL +RV  +L  
Sbjct: 16 NKQQKQAVDSVEGPVMVIAGPGTGKTQILSRRVANILTN 54


>gi|330891796|gb|EGH24457.1| UvrD/REP helicase [Pseudomonas syringae pv. mori str. 301020]
          Length = 570

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 47/194 (24%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R A      G+GKTH+ LV                        A  E+   +L+     
Sbjct: 16  ARHALALGGPGAGKTHVALV-----------------------KARNEIRSGILKPGQKV 52

Query: 90  SHLSDEILS-AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
             LS    + A I +   +  ++ D+ +              L+V T H F  +I++   
Sbjct: 53  LFLSFARPTVARIIETASELISREDLKQ--------------LEVSTYHGFAWSILRSHA 98

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
              N   +  +    ++   + +  K+        +  E ++ F +   +  D    +L 
Sbjct: 99  YLLNGRPNLQLLPPPEAAAHLADIDKA-------QHENEKRRLFEQEGRLHFDL-FASLA 150

Query: 209 SDIISNRTALKLIF 222
           S+++S    L  IF
Sbjct: 151 SELLSRSDRLSAIF 164


>gi|328907739|gb|EGG27503.1| UvrD/Rep helicase [Propionibacterium sp. P08]
          Length = 745

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
             Q +      S  +   AG+GKT +++ R + L   N   + ++  T TK  A E+S 
Sbjct: 266 QRQFVNRRWNGSFRLGGGAGTGKTVVILHRAVSLARDNPD-ARIIITTFTKNLANELSE 323


>gi|313836712|gb|EFS74426.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2]
 gi|314929881|gb|EFS93712.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1]
 gi|314972309|gb|EFT16406.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3]
          Length = 752

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
             Q +      S  +   AG+GKT +++ R + L   N   + ++  T TK  A E+S 
Sbjct: 273 QRQFVNRRWNGSFRLGGGAGTGKTVVILHRAVSLARDNPD-ARIIITTFTKNLANELSE 330


>gi|116671303|ref|YP_832236.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611412|gb|ABK04136.1| UvrD/REP helicase [Arthrobacter sp. FB24]
          Length = 1150

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 20  TKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAA 76
           T  +Q     P  S    V    G+GK+ +L++  +R        P  +L L  ++ AA 
Sbjct: 57  TPDQQAAVDVPHGSGPVLVPGAPGTGKSTVLIEAAVRRAERDGLDPERMLVLAPSRLAAD 116

Query: 77  EMSHRVLEIITA 88
            +  R    +  
Sbjct: 117 SLRDRFTARLNR 128


>gi|268610350|ref|ZP_06144077.1| hypothetical protein RflaF_12736 [Ruminococcus flavefaciens FD-1]
          Length = 773

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 26  LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74
           + S P  S   +++  G+GKT+ ++QR++ +L  N  P   +  L +T++A
Sbjct: 183 IVSAPLSSHIILNSGPGTGKTYTIIQRLIYILANNLCPADEIYILCYTRSA 233


>gi|227537680|ref|ZP_03967729.1| possible UvrD/REP helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242294|gb|EEI92309.1| possible UvrD/REP helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 395

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 62/207 (29%), Gaps = 59/207 (28%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAE 77
             E+L          ++A  GSGKT  + +++L L  +     H S + CL+ T +A  E
Sbjct: 5   NEERLAYLQARGKVILNACPGSGKTTTIAKKILNLETSKEIGGH-SGVACLSFTNSAKDE 63

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           ++                                      R L    L+ P    V TI 
Sbjct: 64  INE-----------------------------------AYRKLSGKSLQFPN--HVSTID 86

Query: 138 AFCEAIMQ-QFPLEANITSH-FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195
           +F    +   F    N   +   I D             + L  +      +  K    +
Sbjct: 87  SFINKFITLPFYNLLNRDFNRPKILDHT-----------NILDDMWKTTYVKNGKTLDGL 135

Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222
           L   N+ + +       +NR+   L  
Sbjct: 136 LRPLNNAEYKA-----KNNRSIFHLYP 157


>gi|25029450|ref|NP_739504.1| hypothetical protein CE2894 [Corynebacterium efficiens YS-314]
 gi|259508366|ref|ZP_05751266.1| helicase [Corynebacterium efficiens YS-314]
 gi|23494739|dbj|BAC19704.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164036|gb|EEW48590.1| helicase [Corynebacterium efficiens YS-314]
          Length = 777

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-------HPSTLLCLTHTK 72
             +Q++  D + SA V   AG+GKT + V R  RL+ +N        +P  +L  T T+
Sbjct: 291 DQQQIIDRDYSGSARVFGGAGTGKTVVAVHRANRLVTSNGRTPTLSDNPPAVLLTTFTR 349


>gi|325277139|ref|ZP_08142785.1| hypothetical protein G1E_26253 [Pseudomonas sp. TJI-51]
 gi|324097716|gb|EGB95916.1| hypothetical protein G1E_26253 [Pseudomonas sp. TJI-51]
          Length = 475

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 43/145 (29%), Gaps = 44/145 (30%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           ++A AG GKT    Q +   L+A+     +L LTHT A                      
Sbjct: 15  ITAPAGCGKT----QLIAETLIAHTQSKPILVLTHTNA---------------------G 49

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
           + +      +   PN                     +V TI  F   ++ +FP  +    
Sbjct: 50  VAALRARLRRAGVPN------------------SAYRVSTIDGFSMRLIAKFPARSGHNP 91

Query: 156 H-FAIADEEQSKKLIEEAKKSTLAS 179
               +         I EA    L +
Sbjct: 92  QILQLHQPNTDYPAIREAAMQLLQA 116


>gi|172040183|ref|YP_001799897.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851487|emb|CAQ04463.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 1188

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            D +    V    G+GKT +LV  ++  L A      ++ +T TK AA
Sbjct: 60  IDSSAPWTVLGGPGTGKTSLLVDTLVHFLAAGGSAEEVMVVTPTKDAA 107


>gi|328856635|gb|EGG05755.1| hypothetical protein MELLADRAFT_77976 [Melampsora larici-populina
           98AG31]
          Length = 1022

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 20  TKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
              +Q   ++      P     V    G+GKT +LV+ VL+L     +PS  +L    + 
Sbjct: 497 NPPQQDAIANILTRRHPDIPFIVFGPPGTGKTAVLVEAVLQLC---ENPSTRILMAAPSN 553

Query: 73  AAAAEMSHRVLEI 85
           AAA +++ R+L+ 
Sbjct: 554 AAADQLALRLLQA 566


>gi|54308663|ref|YP_129683.1| hypothetical protein PBPRA1470 [Photobacterium profundum SS9]
 gi|46913092|emb|CAG19881.1| Hypothetical protein PBPRA1470 [Photobacterium profundum SS9]
          Length = 775

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 49/152 (32%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
            A AG+GKT  LV  +   L      + +L +         M +R               
Sbjct: 3   VAGAGTGKTTTLVGLIANKL-DTVPANEMLVM---------MFNR--------------- 37

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL--EANIT 154
                            +     L    +     + V T H+FC  +++Q     E    
Sbjct: 38  --------------DIRIDFQAKLQANGIN--SAVPVHTFHSFCMQLLKQTGYLNETGFQ 81

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
             F   D +++        KS L ++      
Sbjct: 82  LSFNEGDRDKT------IAKSILRTVAAGEKS 107


>gi|289705136|ref|ZP_06501540.1| ATP-dependent DNA helicase (UvrD/REP) family protein [Micrococcus
           luteus SK58]
 gi|289558164|gb|EFD51451.1| ATP-dependent DNA helicase (UvrD/REP) family protein [Micrococcus
           luteus SK58]
          Length = 1146

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           D I+ T  ++ +AS         V    G+G+T + V+   R + A   P +LL L  ++
Sbjct: 32  DRITLTDEQEAIASLAPGHGAVLVLGAPGTGRTTVAVEYAARRIEAGLDPESLLLLAPSR 91

Query: 73  AAAAEMSHRVLEIITAWSH 91
            AAA +   +   + A   
Sbjct: 92  DAAARLRDALTRRLAAAGR 110


>gi|325002334|ref|ZP_08123446.1| UvrD/Rep helicase [Pseudonocardia sp. P1]
          Length = 709

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           D      +S  AG+GKT +LV R  R L      + ++  T T   A  +  
Sbjct: 257 DYNGPFRLSGGAGTGKTVVLVHR-ARRLARQNPQARIVLTTFTTNLADALRE 307


>gi|284007550|emb|CBA73069.1| DNA helicase IV [Arsenophonus nasoniae]
          Length = 684

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 7   FQEHSETIDLISQTK---SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP- 62
            +++S+     + T+   S+     +   +  V    GSGKT IL+ ++  LLL      
Sbjct: 182 LKQYSKFFQQFTITQLNLSQVNCVVNSEENILVLGGPGSGKTSILIAKMGWLLLRQLAIT 241

Query: 63  STLLCLTHTKAAAAEM 78
             +L L      A +M
Sbjct: 242 EQILLLAFDDKTAKKM 257


>gi|32442174|gb|AAP82049.1| putative mating pair formation protein [Stenotrophomonas
           maltophilia]
          Length = 330

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 6   SFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           + QE+ ++  ++S  + +QLL A    ++  V    GSGKT  L   ++  +        
Sbjct: 129 TLQEYVDS-GIMSPMQMQQLLSAVRSRKNILVVGGTGSGKT-TLSNAIIHAISQEHPNDR 186

Query: 65  LLCLTHTK----AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           +L +  T     AAA  +  R +E +T    L   +       + G+  + S ++     
Sbjct: 187 ILIIEDTGELQCAAANAVVMRAVEDVTMERLLKASLRLRPDRILVGEVRDGSALT----- 241

Query: 121 LITILETPGGLKVQTIHA 138
           LI    T     + TIH+
Sbjct: 242 LIEAWNTGHPGGIATIHS 259


>gi|328885698|emb|CCA58937.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae
           ATCC 10712]
          Length = 569

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 40/144 (27%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82
           +    D +    +    G GKT  +     +  LA   P   +L L+ ++AA  +++ R+
Sbjct: 7   RQEILDASGHLLIVGGPGCGKT-TIALLKAQARLAALEPEQRVLFLSFSRAAVHQITDRM 65

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             ++   S                                        L+V+T HAF   
Sbjct: 66  SGVLDRASR-------------------------------------QRLEVRTFHAFFLD 88

Query: 143 IMQQFP-LEANITSHFAIADEEQS 165
           +++    L     S F   D E+ 
Sbjct: 89  VVRSHGRLLTGRPSSFITPDRERQ 112


>gi|313126003|ref|YP_004036273.1| DNA/RNA helicase, superfamily i [Halogeometricum borinquense DSM
           11551]
 gi|312292368|gb|ADQ66828.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM
           11551]
          Length = 902

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 6   SFQEHSET--IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +F E SE   ID          LA D    A V    G+GKT+ +  R++R L+A+ +  
Sbjct: 519 AFTERSEATYIDNNDAQNEAVKLAVDAEDFALVHGPPGTGKTYTIA-RIVRALVADGN-- 575

Query: 64  TLLCLTHTKAA 74
            +L    T  A
Sbjct: 576 RVLLSAFTNRA 586


>gi|326326015|ref|YP_004250824.1| putative Superfamily I DNA and RNA helicase [Vibrio
          nigripulchritudo]
 gi|323669066|emb|CBJ93108.1| putative Superfamily I DNA and RNA helicase [Vibrio
          nigripulchritudo]
          Length = 491

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           A AG+GKT+ L ++++      +H   +  +T+T +AA  +S  +++ + 
Sbjct: 6  IAGAGAGKTYGLAKKIIAHYDLKSH-KKIFAITYTNSAAKNISQAIIKHLG 55


>gi|312621143|ref|YP_004022756.1| lexa repressor [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201610|gb|ADQ44937.1| LexA repressor [Caldicellulosiruptor kronotskyensis 2002]
          Length = 819

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
          + ++L  + P     V   AGSGKT + + R++ LL     A    +L +T  K
Sbjct: 6  EQKKLSQAKPNGHMLVKGVAGSGKTTVAIYRLVYLLNEYCFAPDDKILMVTFNK 59


>gi|295135055|ref|YP_003585731.1| UvrD/REP helicase [Zunongwangia profunda SM-A87]
 gi|294983070|gb|ADF53535.1| UvrD/REP helicase [Zunongwangia profunda SM-A87]
          Length = 360

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----LLANAHPSTLLCLT 69
          ID+ S+ +       D +    ++A  G GKT  + Q+++ L    L      S + CL+
Sbjct: 3  IDITSELQ----AYLDASGKVVLNACPGGGKTTAIAQKIINLEPQYLKKYDAYSGIACLS 58

Query: 70 HTKAAAAEMSH 80
           T AA  E++ 
Sbjct: 59 FTNAAKDELNE 69


>gi|254874977|ref|ZP_05247687.1| rep, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254840976|gb|EET19412.1| rep, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 607

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           E   GL + T H+   +I+++   E     +F + D   S  LI +    
Sbjct: 12  EKSKGLMISTFHSLGLSILKKHFNELGYKKNFTLFDSHDSLALIYDIAYD 61


>gi|298251766|ref|ZP_06975569.1| ATP-dependent DNA helicase, RecQ family [Ktedonobacter racemifer DSM
            44963]
 gi|297546358|gb|EFH80226.1| ATP-dependent DNA helicase, RecQ family [Ktedonobacter racemifer DSM
            44963]
          Length = 3126

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 20   TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
            T+ ++ L    T    ++  AGSGKT IL +    L+ A   P   +L  T+ ++A    
Sbjct: 2473 TQEQKDLVRLSTGRHLITGPAGSGKTTILQEHFRYLIEAQLVPHENILVATYYRSA---- 2528

Query: 79   SHRVLEIIT 87
              R+   + 
Sbjct: 2529 KERIYANLA 2537


>gi|325672992|ref|ZP_08152686.1| UvrD/REP helicase [Rhodococcus equi ATCC 33707]
 gi|325556245|gb|EGD25913.1| UvrD/REP helicase [Rhodococcus equi ATCC 33707]
          Length = 566

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 56/167 (33%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75
           +  T+ + L A+       V    G GKT  +     R    +  P   +L L+ ++AA 
Sbjct: 3   LDDTRRDILAAA---GHLLVEGGPGCGKT-TIALLKARAFADSLEPEQRVLFLSFSRAAV 58

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            ++S R+  I ++                                     E    L+++T
Sbjct: 59  RQISDRMFGIFSS-------------------------------------EDRDRLEIRT 81

Query: 136 IHAFCEAIMQQFP--------------LEANITSHFAIADEEQSKKL 168
            HAF   +++                  EA + + F    EE++K+L
Sbjct: 82  FHAFFLDMVRSHGRMLTGEVASFITPDREALLKADFEGNWEEETKRL 128


>gi|86608056|ref|YP_476818.1| UvrD/Rep family helicase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556598|gb|ABD01555.1| helicase, UvrD/REP family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 510

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++  +   + A+       V A AG+GKT  LV+ V + L        +L LT +KA A 
Sbjct: 4   LTDEQKAVVEAAKTGSHLKVVAFAGAGKTFTLVE-VAKALAG----KRILYLTFSKALAE 58

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           E   +   +    ++ +           + K+   S     R L
Sbjct: 59  EAKQKFGSLADVMTNHALAYKETGKLFAEKKRLGGSLFKARRKL 102


>gi|284050462|ref|ZP_06380672.1| UvrD/REP helicase [Arthrospira platensis str. Paraca]
 gi|291570544|dbj|BAI92816.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 809

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 43/172 (25%)

Query: 34  AWVSANAGSGK-THILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH 91
             VSA  G+GK T +     L +     +P   L+ +T T+AAA+ +  ++ + +   S 
Sbjct: 71  LAVSAVPGAGKSTGMAAAAALAIARHQLNPQRQLIVVTFTRAAASNIRAKIRQHLNNLSI 130

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                                              +P G  V T+H     I    P  +
Sbjct: 131 -----------------------------------SPVGFVVNTLHGLALYIATNHPALS 155

Query: 152 NIT-SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
            +   +  +     S +LI    +  +      +N  L +   E  +  ++E
Sbjct: 156 GLDLENATLVVPTSSHRLIRACVEQWIT-----HNPRLYETLIEGCQFDSEE 202


>gi|119946203|ref|YP_943883.1| hypothetical protein Ping_2563 [Psychromonas ingrahamii 37]
 gi|119864807|gb|ABM04284.1| conserved hypothetical protein [Psychromonas ingrahamii 37]
          Length = 385

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88
            ++ V A AGSGKT +LV+  +       +P+  +L  T+T++   E+  + ++ +  
Sbjct: 2  NNNSLVIAAAGSGKTTLLVKTAI------ENPNRPILITTYTESNEQEIRDKFVKKVRT 54


>gi|218777923|ref|YP_002429241.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
 gi|218759307|gb|ACL01773.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
          Length = 676

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 40/122 (32%), Gaps = 47/122 (38%)

Query: 28  SDPTRSAW-------VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAE 77
            DP +          VSA  GSGKT +LV ++   +LAN        +  L+HT AA  E
Sbjct: 37  DDPRKEVLKDMTTFDVSACPGSGKTTLLVAKLA--ILANKWSHRTSGICVLSHTNAARDE 94

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  R+                                     +   +L  P    + TIH
Sbjct: 95  IEKRLGSS---------------------------------AVGRQLLNYPHY--IGTIH 119

Query: 138 AF 139
            F
Sbjct: 120 GF 121


>gi|17227661|ref|NP_484209.1| hypothetical protein alr0165 [Nostoc sp. PCC 7120]
 gi|17135143|dbj|BAB77689.1| alr0165 [Nostoc sp. PCC 7120]
          Length = 821

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 45/167 (26%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---------AHPSTLLCLTHTKA 73
           +Q +A   +    VSA  G+GK+  +       +            +    L+ +T T++
Sbjct: 36  QQQMADWQSGPLAVSAVPGAGKSTGMAAAAAIAIARQYQQAAESRTSSRRQLVVVTFTRS 95

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAA +  ++                                   RH L  +     G  V
Sbjct: 96  AAANIKAKI-----------------------------------RHYLKQLSLPQTGFAV 120

Query: 134 QTIHAFCEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179
            T+H     I  + P  + +   +  +    QS + I  A +  + +
Sbjct: 121 YTLHGLALNIASRHPDLSGLELENVTLITPNQSHRFIRTAVEQWINN 167


>gi|304395579|ref|ZP_07377462.1| UvrD/REP helicase [Pantoea sp. aB]
 gi|304356873|gb|EFM21237.1| UvrD/REP helicase [Pantoea sp. aB]
          Length = 707

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 17/141 (12%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA--NAHP-STLLCLTHTKAAAA 76
            S++ L  +P T    V   AG+GKT + + R  R L       P   +L  T T+  AA
Sbjct: 243 PSQRKLVENPATGPVRVLGGAGTGKTVVAMHR-ARWLAQRLGDQPGKKILFTTFTRNLAA 301

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           ++   +  + +       E+++ +    +  K +  D            +          
Sbjct: 302 DIRANLQRLCSREEMARIEVINIDAWMSEQLKRHGYDFRVVYESDEGRRKCWSYA----- 356

Query: 137 HAFCEAIMQQFPLEANITSHF 157
                  +QQ P E  ++ +F
Sbjct: 357 -------LQQAPAELGLSDNF 370


>gi|219851418|ref|YP_002465850.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219545677|gb|ACL16127.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 669

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 17  ISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73
           I++   EQL  +      ++++ A  GSGKT ++  +    +         +  LT T A
Sbjct: 46  IAEKTLEQLEFIVHSLNENSYLKACPGSGKTEVVGLKTAYEIGKWQKKTRGIAVLTFTNA 105

Query: 74  AAAEMSHRVLE 84
           A   +  RVL+
Sbjct: 106 AVDVIIERVLQ 116


>gi|51892446|ref|YP_075137.1| putative DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856135|dbj|BAD40293.1| putative DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 500

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
          +  T  ++   + P  +   +    GSGKT +L++R  R+  A   PS  +L LT 
Sbjct: 11 VKLTDQQRRCVNWPLDQDLLIRGIPGSGKTTVLLERAYRIETAGGTPSPRILVLTF 66


>gi|168186688|ref|ZP_02621323.1| superfamily I DNA helicase [Clostridium botulinum C str. Eklund]
 gi|169295311|gb|EDS77444.1| superfamily I DNA helicase [Clostridium botulinum C str. Eklund]
          Length = 726

 Score = 44.9 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 42/105 (40%)

Query: 19  QTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH------PSTL----LC 67
           +   EQ+ A     +   V A  G+GKT  L++RV  L+           P  +    L 
Sbjct: 24  ELNKEQISAVLSEENNLAVIACPGAGKTTTLIRRVDYLVTFGFIYNTDYCPEEITTSDLN 83

Query: 68  L-------------------------------THTKAAAAEMSHR 81
           +                               T T+AAA  M  R
Sbjct: 84  ILEGYLNYNKGNTRLNYLLRQKAISANNIIIITFTRAAAKNMKKR 128


>gi|149743843|ref|XP_001493676.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX59
           (DEAD box protein 59) (Zinc finger HIT domain-containing
           protein 5) [Equus caballus]
          Length = 616

 Score = 44.9 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  +LR LL +  P+  L LT T+    E++ ++       
Sbjct: 237 GRDILASADTGSGKTAAFLLPVILRALLESKTPAA-LILTPTR----ELAIQIERQAKEL 291

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + R  +  I+ TPG L           I++Q  +
Sbjct: 292 MT---GLPRMKTVLLVGGLPLPPQLHRLRQHVKVIIATPGRL---------LDIIKQNAV 339

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           +   I     + DE  +   +  ++     L ++  D    L  A            IE 
Sbjct: 340 DLCGI--KIVVVDEADTMLKMGFQQQVLDVLENVPQDCQTILVSATIP-------TSIEQ 390

Query: 207 LISDIISN 214
           L   ++ N
Sbjct: 391 LAGQLLHN 398


>gi|256027932|ref|ZP_05441766.1| hypothetical protein PrD11_08031 [Fusobacterium sp. D11]
          Length = 48

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLR 54
          ++ +K +  + + P  ++  V+A AGSGKT IL++RV R
Sbjct: 1  MNFSKEQNEILNLPFDQNIIVNACAGSGKTTILIERVKR 39


>gi|300777523|ref|ZP_07087381.1| UvrD/REP helicase subfamily [Chryseobacterium gleum ATCC 35910]
 gi|300503033|gb|EFK34173.1| UvrD/REP helicase subfamily [Chryseobacterium gleum ATCC 35910]
          Length = 561

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAA 75
           +   V A  G+GKTH LV+ +  +     L++ A    +LC+T+T  AA
Sbjct: 14 NKHFKVKAGPGAGKTHWLVEHIKNVTRNSTLISGAK--KILCITYTNIAA 61


>gi|308455540|ref|XP_003090297.1| hypothetical protein CRE_04415 [Caenorhabditis remanei]
 gi|308264727|gb|EFP08680.1| hypothetical protein CRE_04415 [Caenorhabditis remanei]
          Length = 1230

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
            AGSGKT+ ++   L  L A+   +++ C+T T  A  E+  R    + + S +  E L 
Sbjct: 636 GAGSGKTYSMLS-FLEELYASHPQTSVACVTFTNVAVNEIRSRFSTPVLSVSTIH-EFLW 693

Query: 99  AEITKIQGKKPNKSDMSKARHLLITILETP 128
           A I + Q        +     ++ + L+ P
Sbjct: 694 ALIGRFQKNVRESLAILVNEGVIKSALDLP 723


>gi|75907647|ref|YP_321943.1| UvrD/REP helicase [Anabaena variabilis ATCC 29413]
 gi|75701372|gb|ABA21048.1| UvrD/REP helicase [Anabaena variabilis ATCC 29413]
          Length = 833

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 45/167 (26%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---------AHPSTLLCLTHTKA 73
           +Q +A   +    VSA  G+GK+  +       +            +    L+ +T T++
Sbjct: 36  QQQMADWQSGPLAVSAVPGAGKSTGMAAAAAIAIARQYQQAAESRTSSRRQLVVVTFTRS 95

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AAA +  ++   +   S                                       G  V
Sbjct: 96  AAANIKAKIRNYLKQLSLPQT-----------------------------------GFAV 120

Query: 134 QTIHAFCEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179
            T+H     I  + P  + +   +  +    QS + I  A +  + +
Sbjct: 121 YTLHGLALNIASRHPDLSGLELENVTLITPNQSHRFIRTAVEQWINN 167


>gi|326388726|ref|ZP_08210317.1| DNA helicase II [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206800|gb|EGD57626.1| DNA helicase II [Novosphingobium nitrogenifigens DSM 19370]
          Length = 576

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85
           +++  + A AG+GKT+ LV  + +++  +          + C+T+T+ A  E+++ + E 
Sbjct: 26  SQNFRLEAGAGAGKTYSLVAALKKIIAESGPALIHAGQQVACITYTEVARQEIANEIEEH 85

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
                +       A I++ Q       ++  A       ++  GG++
Sbjct: 86  PAILVNTIHGFGWAFISRFQKTL---RELVAAHEPYSEAIKAAGGIQ 129


>gi|83648356|ref|YP_436791.1| superfamily I DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83636399|gb|ABC32366.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 675

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           V+  AG+GKT +L+ R  + L     P   +L  T TK  A  +   + ++I       D
Sbjct: 258 VNGAAGTGKTVVLMHR-AQWLARQIKPNEKILITTFTKNLAVTIKGLLGQMIPEHMDNID 316

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQT-I-HAFCEAIMQQFPLEA 151
            I    + K    K + +  +     + ++L      + V T   H F   I+ +F    
Sbjct: 317 VINLHLLAKNICHKTSFNLRTSDDKTVTSMLRQFLSDMPVTTEFSHNF---ILDEFYEVI 373


>gi|167968315|ref|ZP_02550592.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           H37Ra]
          Length = 1031

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 27/104 (25%)

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L LT T+ AA ++  RV   +   +           T++    P               
Sbjct: 1   MLGLTFTRKAAGQLLRRVRSRLARLAG----------TRLGCGDPAACAPV--------- 41

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
                   V T +AF  ++++ + L   +     +  E +  +L
Sbjct: 42  --------VSTYYAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 77


>gi|328873818|gb|EGG22184.1| putative splicing endonuclease [Dictyostelium fasciculatum]
          Length = 1947

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 11   SETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-----------LA 58
            S   + ++ ++ E + AS  P+    +    G+GKT  ++  +  LL           L 
Sbjct: 1367 SALKESLNDSQIEAIHASLTPSGFTLLQGPPGTGKTKTIIALLSVLLHTMTPIKDDSKLK 1426

Query: 59   NAHPSTLLCLTHTKAAAAEMSHRVLE 84
            N  P  +L    + AA  E++ R+L+
Sbjct: 1427 NQAPIKILVTAPSNAAVDEIATRILD 1452


>gi|34764245|ref|ZP_00145096.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27885979|gb|EAA23304.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 401

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 114 MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEE 171
           M     +   I++    LK+ TI AF   I +   +  N+     + + DEE++    ++
Sbjct: 1   MENLSKVYKEIIKNKEKLKIYTIDAFFNIIFKN--IVINLMKIKSYTMLDEEENFSYYKK 58

Query: 172 AKKSTLASIMLDNNEELKKAFYEILEISNDEDIET---LISDIISNRTALKL 220
             ++        NNE+L   F      +++++I+    +I  +IS+R    L
Sbjct: 59  VLENIF------NNEKLFNDFKNFFTENSEKNIDNYISIIQRLISSRWKYIL 104


>gi|159039659|ref|YP_001538912.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918494|gb|ABV99921.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 1096

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 39/165 (23%)

Query: 48  LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK 107
           LV+ V   +     P  +L LT ++  AA +  R+   I    H                
Sbjct: 36  LVEAVAARVAEGVDPERVLVLTFSRRQAASLRQRIEARIAGDGH---------------- 79

Query: 108 KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167
                       +L   L       V+T  A+   ++++   E        +    +   
Sbjct: 80  -----------RVLREPL-------VRTFPAYAFGLLRRAAAERG-EPSPRLLTGPEQDL 120

Query: 168 LIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
           +I E     L  +  + + +      ++            + D++
Sbjct: 121 IIRE----LLDLVGEEPDNDPVGWPEDLRPALRTRAFAAQLRDLL 161


>gi|158288090|ref|XP_309965.4| AGAP011545-PA [Anopheles gambiae str. PEST]
 gi|157019307|gb|EAA05697.4| AGAP011545-PA [Anopheles gambiae str. PEST]
          Length = 1581

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASD-----PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E ++A       P     +    G+GKT+ L Q + +LLL +   + +L  TH+
Sbjct: 791 LNSKQKEAVVAITTPVSVPLPPILLIGPFGTGKTYTLAQAIKQLLLQDG--TKILICTHS 848

Query: 72  KAAA 75
            +AA
Sbjct: 849 NSAA 852


>gi|328885776|emb|CCA59015.1| putative DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 731

 Score = 44.5 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL---LLANAHPSTLLCLTHTK 72
            +  ++ +    S  T  A V+   G+GKT + + R L L   L A+A   ++L  T T+
Sbjct: 264 FLHPSQRKLAYRSSYTGPARVTGGPGTGKTVVALHRALHLAQQLPADAPDESILLTTFTR 323

Query: 73  AAAAEMSHRVLEIITAWSHLSD------EILSAEITKIQGKKPNKSDMSKARHLLITILE 126
             AA++   +  +I   +  +       + L+ ++ + +   P  + ++  + +L     
Sbjct: 324 DLAADLRSNLELLIPEPALRAKIRVVNVDALANQVVREERGAP-LALLAAQKEILNRWSR 382

Query: 127 TPGGLKV 133
           T   L++
Sbjct: 383 TAQRLEI 389


>gi|323181880|gb|EFZ67292.1| nuclease-related domain protein [Escherichia coli 1357]
          Length = 616

 Score = 44.5 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 82/246 (33%), Gaps = 53/246 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           + F   + TI  I  T+ EQL  S       +   AGSGKT IL  R   L   N     
Sbjct: 222 DEFSVDAPTIISILDTQQEQLARSMRDGHRIIHGVAGSGKTLILYHRCQELAKKNDSEKP 281

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L + +                                          +++ A+ L    
Sbjct: 282 ILVICY------------------------------------------NITLAKKLRSMF 299

Query: 125 LETP--GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL----IEEAKKSTLA 178
           +  P    +KV+  HA+C   +++   +  I     I +  +          + K    +
Sbjct: 300 INHPFAEKIKVKNFHAWCFQQIKEN--KITIPEGDNIFENMEQALTDGFNTGKIKPEQYS 357

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++++D   + K  + +IL    D   E L+    D  S     K + F  S +  +    
Sbjct: 358 AVLIDEGHDFKPEWLKILAKMTDSQDENLLFLYDDAQSIYQKKKALDFTLSSVDIKATGR 417

Query: 236 KSLWSI 241
            ++ +I
Sbjct: 418 TTILNI 423


>gi|291461161|ref|ZP_06027290.2| DNA helicase [Fusobacterium periodonticum ATCC 33693]
 gi|291378403|gb|EFE85921.1| DNA helicase [Fusobacterium periodonticum ATCC 33693]
          Length = 1621

 Score = 44.5 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 12  ETIDLISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           E I  +  T  EQ+  +   +   +  V    G+GKTH +   +   L        +L  
Sbjct: 362 EEILFVKDTNREQVDIAKQIEINDAVVVQGPPGTGKTHTIANLLGHFLAQG---KNVLIT 418

Query: 69  THTKAAAAEMSHRVLEIITAW 89
           +HTK A   +  ++ + I   
Sbjct: 419 SHTKKALRVLKEKIPKNIQGL 439


>gi|289674805|ref|ZP_06495695.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
          syringae FF5]
          Length = 46

 Score = 44.5 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
            S  + A+AG+GKT  +    LRL+L    P
Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGPGPP 46


>gi|330971230|gb|EGH71296.1| UvrD/REP helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 830

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 75/216 (34%), Gaps = 28/216 (12%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   ++++++  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFISKLIDVMALW 204

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
            H  ++  + E+ +    +      S      +   E                     P 
Sbjct: 205 GHALEQKQAREVVRTFHSRILPLVRSLPGFEQLRAFENLSSQSSG-------------PE 251

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLA--SIMLDNNEELKKAFYEILEISNDEDI--- 204
           EA+    F +   +  ++ +    +   A      +    L +   ++ E+  D      
Sbjct: 252 EADSNP-FDLRINDAQRQQLNLCYRDLYAGNERFREVMAPLYRHALQLKELDRDHPDVQK 310

Query: 205 ETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
              ++++ S R           +  +  W  K IE 
Sbjct: 311 RVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 346


>gi|219854981|ref|YP_002472103.1| hypothetical protein CKR_1638 [Clostridium kluyveri NBRC 12016]
 gi|219568705|dbj|BAH06689.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 829

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 15 DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTH 70
          D+  Q   EQ  L+   P+  + +   AGSGKT + V R+  LL          +L +T 
Sbjct: 12 DMYMQLNVEQKKLVQLRPSGHSLIRGVAGSGKTTVAVNRISFLLNHYCFEKQDRILVITF 71

Query: 71 TK 72
           +
Sbjct: 72 NR 73


>gi|167035149|ref|YP_001670380.1| UvrD/REP helicase [Pseudomonas putida GB-1]
 gi|166861637|gb|ABZ00045.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 545

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            Q  A D   S  ++A  GSGKT ++V+++ R   +      ++ ++ T  ++ E+  +
Sbjct: 9  DAQEKAIDCLGSMVITACPGSGKTTVMVEKIRREFDSLKPHQGVIGISFTIKSSMELGEK 68


>gi|118363593|ref|XP_001015021.1| hypothetical protein TTHERM_00674500 [Tetrahymena thermophila]
 gi|89296788|gb|EAR94776.1| hypothetical protein TTHERM_00674500 [Tetrahymena thermophila
           SB210]
          Length = 837

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL   T  ++     P      V+A AGSGKT  ++Q V +  L+  +   +   T    
Sbjct: 42  DLDRFTDDQKKFILSPKNVDIKVNACAGSGKTECILQFVKQARLSGINYKQICITTFNIQ 101

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A  ++  R +++      L+DEI      K+  K              I  L+ P    +
Sbjct: 102 AINDIHKRAVDLFGE--ELADEIEIKNFDKLITKSYES----------IKTLQNPQQKDI 149

Query: 134 QT 135
            T
Sbjct: 150 FT 151


>gi|320161382|ref|YP_004174606.1| hypothetical protein ANT_19800 [Anaerolinea thermophila UNI-1]
 gi|319995235|dbj|BAJ64006.1| hypothetical protein ANT_19800 [Anaerolinea thermophila UNI-1]
          Length = 701

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
          + + T  ++ +   P   A+V   AGSGKT   V R+  LL +     ++  +
Sbjct: 1  MTAFTPEQEKVIHLPLCHAFVEGPAGSGKTTAAVARLETLLKSGVAGDSIFIM 53


>gi|56752512|ref|YP_173213.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
 gi|81300327|ref|YP_400535.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 7942]
 gi|56687471|dbj|BAD80693.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
 gi|81169208|gb|ABB57548.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 7942]
          Length = 766

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 69/201 (34%), Gaps = 51/201 (25%)

Query: 44  KTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102
           KT  + +R+ RL+      P  +L  T  + A  ++  ++ +                  
Sbjct: 29  KTTTIARRIGRLVHQVEVPPGRILATTFNRYARGQIREKLNQ------------------ 70

Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162
                                 L  P G+ V+T+HA  + I++   LEA+      +A +
Sbjct: 71  ----------------------LAVPVGVAVRTLHALAQQILK---LEADPWP---LAAD 102

Query: 163 EQSKKL---IEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALK 219
            + ++L   ++ A +     + LD +   ++   ++ E S    +  L  D+  +    +
Sbjct: 103 GEMRRLFYDMQSAIRQGRLDLSLDLSSHEQRQIADLNEESFLNYLGYLKGDLRFSAWQFE 162

Query: 220 LIF-FFFSYLWRRKIIEKSLW 239
            +     +        E   W
Sbjct: 163 QLPTHLQTVATLEVWPESQRW 183


>gi|297561670|ref|YP_003680644.1| hypothetical protein Ndas_2725 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846118|gb|ADH68138.1| protein of unknown function DUF559 [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 1489

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 12/123 (9%)

Query: 19  QTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            + +EQ    +  R      V    G+GKTH +   V  LL        +L  + T  A 
Sbjct: 384 PSNAEQRSIGERLRDSDLVVVQGPPGTGKTHTIANLVTDLLARG---QRILITSQTTRAL 440

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQG------KKPNKSDMSKARHLLITILETPG 129
             +  ++ E I   +            +++G      ++    D ++AR  + ++ E   
Sbjct: 441 KVLKDKLPERIQPLAVSRTGDGVDAQRELEGSVQSILERQADDDPARARKEIRSLQERLD 500

Query: 130 GLK 132
             +
Sbjct: 501 RAR 503


>gi|300855373|ref|YP_003780357.1| putative helicase [Clostridium ljungdahlii DSM 13528]
 gi|300435488|gb|ADK15255.1| predicted helicase [Clostridium ljungdahlii DSM 13528]
          Length = 765

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
             +S+  D+++  + EQ  ++ ++   S  V  +AGSGKT + + R+  LL
Sbjct: 193 SANSKLKDVVATIQKEQNNIIRTEKNISLVVQGSAGSGKTTVALHRLAYLL 243


>gi|39938801|ref|NP_950567.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39721910|dbj|BAD04400.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 1038

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 45/197 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L + +K ++ + +      ++   AGSGKT IL++   +L+        +L  T    A 
Sbjct: 2   LFNLSKEQKDIINSDASCMYIHGGAGSGKTTILIE---KLIQKEKEKPLILVAT---NAT 55

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +   + + +  +S L ++  S    +++    +  +                   ++T
Sbjct: 56  KNI---IYDKL--FSSLKEDYPSYNDDELEKYLKDNYE-------------------IRT 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKK-LIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+F  +              + I +E   K+  I++  K  +  ++L  N++LK  F E
Sbjct: 92  FHSFAYS-----CYL-----KYNIFNETAKKRKFIDDETKLNILKLILKENQDLKLYFKE 141

Query: 195 ILEISNDEDIETLISDI 211
                       L+ ++
Sbjct: 142 ----QRKYSFRKLLQEL 154


>gi|289673939|ref|ZP_06494829.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae FF5]
          Length = 434

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   ++++++  W
Sbjct: 120 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFISKLIDVMALW 177

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H+ ++  + E+                               V+T H+    I      
Sbjct: 178 GHVLEQKQAREL-------------------------------VRTFHS---RILPLVRS 203

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S     D       I +A++  L     D    NE  ++    
Sbjct: 204 LPGFEQLRAFENLSSQSSGLEEVDSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 263

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 264 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 319


>gi|317127867|ref|YP_004094149.1| LexA repressor [Bacillus cellulosilyticus DSM 2522]
 gi|315472815|gb|ADU29418.1| LexA repressor [Bacillus cellulosilyticus DSM 2522]
          Length = 808

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 33/122 (27%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAE 77
           +  +++  +P+    +   AGSGKT + V+R+   L  +  P     +L +T+ K     
Sbjct: 6   EQRRIVELEPSGHMMIKGVAGSGKTTVSVRRI-SFLHDHYCPEEDDNILLVTYNK----- 59

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                                   T +   K     + +A   L ++ ++   +K+ TI 
Sbjct: 60  ------------------------TLLSYIKHQYQKLKEAEPELESLFQSTSEIKIVTID 95

Query: 138 AF 139
           + 
Sbjct: 96  SL 97


>gi|120402800|ref|YP_952629.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955618|gb|ABM12623.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
          Length = 1038

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 38/197 (19%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++   E L   D   +  V    G+GK+ +LV      + A   P ++L LT        
Sbjct: 6   TELSPEALSRRDVRGTVRVLGGPGTGKSSLLVDTAAAHIAAGCDPESVLLLT-------- 57

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                       S LS +  +A  T + G          AR  +   L       V+T+H
Sbjct: 58  ----------GSSRLSAQARAAITTALLGAG--------ARSAVREPL-------VRTVH 92

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++  A+++        +    +    +   +I E     LA  + D +    +    +  
Sbjct: 93  SYAFAVLRLAAQRNG-SPPPRLITSAEQDGIIRE----LLAGDVEDGDASPVRWPERLRP 147

Query: 198 ISNDEDIETLISDIISN 214
             +     T + D+++ 
Sbjct: 148 ALSTVGFATELRDLMAR 164


>gi|330825264|ref|YP_004388567.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329310636|gb|AEB85051.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 585

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 19 QTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTH 70
          +  +++ +A      RS  + A AG+GKT+ LV+ + +L               + C+T+
Sbjct: 12 EKTADERIADCLTNGRSFVLDAGAGAGKTYSLVEGLKKLCAPPIADRLKRDGQQIACITY 71

Query: 71 TKAAAAEMSHRVL 83
          T  A  ++  R+ 
Sbjct: 72 TNVAKDQVIERIQ 84


>gi|254776587|ref|ZP_05218103.1| hypothetical protein MaviaA2_18231 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 309

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 33/161 (20%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             ++  +LA     +  V    G+GK+ +LV   +  + A  +P ++L LT         
Sbjct: 6   DAQAGAVLAPGVRGTVRVLGGPGTGKSSLLVDAAVAQIEAGVNPESVLLLT--------- 56

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                             L+  + +  G  P   +                   V+T+H 
Sbjct: 57  ------GSGRLPMAERSALTTALLRSAGAGPAVREPL-----------------VRTVHG 93

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
           +  A++++    A       +    +   +I E     LA 
Sbjct: 94  YAYAVLRRAAERAGEAP-PRLVTSAEQDAIIRELLAGDLAD 133


>gi|317125679|ref|YP_004099791.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
 gi|315589767|gb|ADU49064.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
          Length = 1053

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 9/124 (7%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           +  +  +S  + ++           V    G+GKT + V+ V+  +   A     L L  
Sbjct: 9   APVVGEVSLDEGQRRAVESEAGVLRVLGGPGTGKTVLAVEIVVDAVARGARADECLLLAA 68

Query: 71  TKAAAAEMSHRVLEIITA---------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
            + AA  +  RV   +           W  L   IL AE        P   +  +   +L
Sbjct: 69  GRTAAGALRERVTARLAGTSTQSLARTWQALGFGILRAEAALRGDPPPRLLNGPEQDAIL 128

Query: 122 ITIL 125
             +L
Sbjct: 129 RDLL 132


>gi|89899845|ref|YP_522316.1| hypothetical protein Rfer_1043 [Rhodoferax ferrireducens T118]
 gi|89344582|gb|ABD68785.1| hypothetical protein Rfer_1043 [Rhodoferax ferrireducens T118]
          Length = 109

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 18 SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLTHT 71
          S    E + A  +  +S  + A AG+GKT+ L++ +  L+  +          + C+T T
Sbjct: 12 SWRALEAMYACLEAGQSFRLEAGAGAGKTYSLIKALQFLIERDHQSLPKRSQQIACITFT 71

Query: 72 KAAAA 76
            A++
Sbjct: 72 NVASS 76


>gi|325284482|ref|YP_004257021.1| helicase-related protein [Deinococcus proteolyticus MRP]
 gi|324316656|gb|ADY27767.1| helicase-related protein [Deinococcus proteolyticus MRP]
          Length = 259

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 15  DLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN------AHPSTLL 66
           D++   +  Q  A  +DP R   V  +AG+GKT +   R+  L   +      A P  +L
Sbjct: 179 DVVETLQPAQYDAMTADPQRFQIVQGSAGAGKTTVGFHRLAWLCAPDRPESVRAAPDRIL 238

Query: 67  CL 68
            L
Sbjct: 239 AL 240


>gi|258510870|ref|YP_003184304.1| hypothetical protein Aaci_0875 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477596|gb|ACV57915.1| conserved hypothetical protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 712

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y  +  + S   D+++  ++EQ  ++ +D      +   AGSGKT + + R+  LL  
Sbjct: 183 LLYRLADSKDSRLHDIVATIQAEQNEVIRADKNVPILIQGVAGSGKTTVALHRLAYLLYQ 242

Query: 59  NAHPSTL 65
             HP  L
Sbjct: 243 --HPEKL 247


>gi|125591443|gb|EAZ31793.1| hypothetical protein OsJ_15947 [Oryza sativa Japonica Group]
          Length = 1249

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 11  SETIDLISQTKSEQL---LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           S    L +    +Q            A +    G+GKT+ +V  V  LL+      ++L 
Sbjct: 822 SYIQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSLLMRG---ESILL 878

Query: 68  LTHTKAA 74
            ++T +A
Sbjct: 879 TSYTNSA 885


>gi|125549510|gb|EAY95332.1| hypothetical protein OsI_17160 [Oryza sativa Indica Group]
          Length = 1269

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 11  SETIDLISQTKSEQL---LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           S    L +    +Q            A +    G+GKT+ +V  V  LL+      ++L 
Sbjct: 842 SYIQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSLLMRG---ESILL 898

Query: 68  LTHTKAA 74
            ++T +A
Sbjct: 899 TSYTNSA 905


>gi|297603268|ref|NP_001053694.2| Os04g0588200 [Oryza sativa Japonica Group]
 gi|32488773|emb|CAE04326.1| OSJNBb0016D16.17 [Oryza sativa Japonica Group]
 gi|255675733|dbj|BAF15608.2| Os04g0588200 [Oryza sativa Japonica Group]
          Length = 1287

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 11  SETIDLISQTKSEQL---LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           S    L +    +Q            A +    G+GKT+ +V  V  LL+      ++L 
Sbjct: 860 SYIQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSLLMRG---ESILL 916

Query: 68  LTHTKAA 74
            ++T +A
Sbjct: 917 TSYTNSA 923


>gi|33863356|ref|NP_894916.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33640805|emb|CAE21260.1| similar to UvrD/REP helicase [Prochlorococcus marinus str. MIT
           9313]
          Length = 576

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL 57
             H   +D ++  +   + A D      +S   G+GKT  +VQ + R + 
Sbjct: 129 SHHPALLDELNPEQQAAVEAIDNHGVLLLSGGPGTGKTSTIVQMLARAVT 178


>gi|302186226|ref|ZP_07262899.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae 642]
          Length = 830

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   ++++++  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFISKLIDVMALW 204

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H  ++  + E+                               V+T H+    I      
Sbjct: 205 GHALEQKQAREL-------------------------------VRTFHS---RILPLVRS 230

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 231 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 290

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 291 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 346


>gi|218782598|ref|YP_002433916.1| hypothetical protein Dalk_4770 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763982|gb|ACL06448.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 472

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 43/122 (35%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V++ AG GKTH++   V      +     +L LTHT A  A +  R             
Sbjct: 15  LVTSPAGCGKTHLISVSV----KNHQETKPILVLTHTNAGVAALRQR------------- 57

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                           +    ++ T+  F   ++  FP  + + 
Sbjct: 58  --------------------------FHKAGVSSKCYRLSTLDGFAMRLVGSFPFRSEVN 91

Query: 155 SH 156
             
Sbjct: 92  PD 93


>gi|293375115|ref|ZP_06621403.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|292646221|gb|EFF64243.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
          Length = 544

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
             E+     P     V+   GSGKT IL+ R + L+  N     +L LT+ K        
Sbjct: 166 DQEEFAKRIPLGHYMVTGIPGSGKTVILLSRAVYLIKENPD-WRILILTYNK-------- 216

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
                  + SH  +  L      ++    N  ++                ++++  H+  
Sbjct: 217 -------SLSHKLNSQLERIAENLKQDAINDINLEN--------------IEIRNFHSEV 255

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL---- 196
             ++ +     N+ +   +   ++S KL  E       +I++D  ++    +  +     
Sbjct: 256 SRLLGRMRKPENMDND--VWFNDESVKLASEKAYPIYDAILIDEYQDFYMNWISLCLKLC 313

Query: 197 -EISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
            E +ND   + +  +I      L+ I+      W+
Sbjct: 314 KEYTNDTS-DKIFKNIFLAGDRLQSIYNRNEISWK 347


>gi|330965308|gb|EGH65568.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 830

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 88/252 (34%), Gaps = 68/252 (26%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKA 73
           +  + ++  +    T S +V A AG+GK+  LV R+  LLL        + +  +T T+ 
Sbjct: 131 VQPSAAQWKMIFSDTPSTYVIAGAGAGKSTSLVVRI--LLLHHYLGFELNAMTVVTFTRE 188

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +  +  +++++++  W H  ++  + ++                               V
Sbjct: 189 SRKDFINKLIDVMALWGHTLEQKQARDL-------------------------------V 217

Query: 134 QTIHAFCEAI------------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181
           +T H+    I            ++ F   ++ +S    AD       I +A++  L    
Sbjct: 218 RTFHS---RILPLVRSLPGLEQLRAFENLSSQSSGQEEADSNPFDLRINDAQRQQLNLCY 274

Query: 182 LD---NNEELKK----------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFF 224
            D   +NE  ++             E+     D      ++++ S R           + 
Sbjct: 275 RDLYASNERFREVMAPLYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWI 334

Query: 225 FSYLWRRKIIEK 236
            + +W  K IE 
Sbjct: 335 RAGVWPIKGIEP 346


>gi|145652285|gb|ABP88202.1| hypothertical protein [Borrelia lonestari]
          Length = 631

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 130 GLKVQTIHAFCEAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172
            L +QT H+F   +++ +    + N  S+F I D     + I++ 
Sbjct: 14  ALHIQTFHSFGAWLLRLYCKKFDKNYDSNFTIWDTNDVVRFIKQI 58


>gi|297157216|gb|ADI06928.1| hypothetical protein SBI_03807 [Streptomyces bingchenggensis BCW-1]
          Length = 1066

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 44/231 (19%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRL-------------LLANAHP-----STLLCLT 69
             +    A+AGSGK++    L  R+  L             L A   P       ++ +T
Sbjct: 303 GHNYLGMASAGSGKSNTIGWLAHRLSSLHTPTDPAEIDPDALAAGLKPGAPVFDKVVIIT 362

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
                         +     + L + + S E T     K ++   +K+  L   +    G
Sbjct: 363 --------------DRRNLDAQLRETVGSFEKTAGLVVKIDEKHGAKSDQLAKALSRETG 408

Query: 130 GLKVQTIHAFCEAI--MQQFPLEANITSHFAIA-DEEQSKKLIEE--AKKSTLASIMLDN 184
            +   T+H F   I  +++ P E     +FAI  DE  S +  +   A ++ L  + LD+
Sbjct: 409 KIITVTLHTFPALIDYLRRNPTEIQ-GHNFAIIVDEAHSSQSGDAATAVRAALRDLGLDS 467

Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           + +   A     E + D  +       I    A  L +F F+   + K +E
Sbjct: 468 DSDEAGATELEAEAATDAKLRR---KAIQRSKASNLSYFAFTATPKAKTLE 515


>gi|167585151|ref|ZP_02377539.1| putative DNA helicase [Burkholderia ubonensis Bu]
          Length = 692

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 10/125 (8%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             Q++  D + +A VS +AG+GKT + + R ++L   +   + +L  T +   A  +   
Sbjct: 236 QRQMVERDYSGAARVSGSAGTGKTVVALHRAVQLACKDED-ARILLSTFSDTLANVLRSN 294

Query: 82  VLEIITAWSHLSD-------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           +  +      L++       + +  ++   +  KP  +   +   LL +  +   GLK  
Sbjct: 295 LFRLTYNTPKLAERLDVVSMDTVGVKLYSAEFGKPIFASREEISSLLKSAAKNVDGLKAN 354

Query: 135 TIHAF 139
           T  +F
Sbjct: 355 T--SF 357


>gi|257388158|ref|YP_003177931.1| DNA replication factor Dna2 [Halomicrobium mukohataei DSM 12286]
 gi|257170465|gb|ACV48224.1| DNA replication factor Dna2 [Halomicrobium mukohataei DSM 12286]
          Length = 934

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ID          LA      A V    G+GKT+ L  R++R L+A      +L    T  
Sbjct: 558 IDNNDAQNEAVRLAVGADDCALVHGPPGTGKTYTLA-RIVRALVARG--DRVLLSAFTNR 614

Query: 74  A 74
           A
Sbjct: 615 A 615


>gi|111018833|ref|YP_701805.1| exodeoxyribonuclease V alpha chain [Rhodococcus jostii RHA1]
 gi|110818363|gb|ABG93647.1| probable exodeoxyribonuclease V alpha chain [Rhodococcus jostii
           RHA1]
          Length = 622

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 18  SQTKSEQLLASDPTRSAW---VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKA 73
           +     Q +A+    + W   V    G+GKTH  V RVL LL     P   +     T  
Sbjct: 173 APAPDRQRIAAAVAATQWTSVVVGGPGTGKTHT-VARVLALLTRQPGPGLRIALAAPTGK 231

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           AAA +   V E   A   L  ++ +  + ++ G +  +    +
Sbjct: 232 AAARLQESVREQSDALG-LPPDLTAMTLHRLLGWQRGRGSRFR 273


>gi|4688688|emb|CAB41435.1| helicase II [Escherichia coli]
          Length = 124

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200
              ++   ++AN+   F I D E   +L+    K  + ++ LD  +   +     +    
Sbjct: 1   HRWLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQK 56

Query: 201 DEDIE 205
           DE + 
Sbjct: 57  DEGLR 61


>gi|302554827|ref|ZP_07307169.1| UvrD/REP helicase [Streptomyces viridochromogenes DSM 40736]
 gi|302472445|gb|EFL35538.1| UvrD/REP helicase [Streptomyces viridochromogenes DSM 40736]
          Length = 709

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            +  ++      +       V+   G+GKT   + RV  LL  +     +L  T+T A A
Sbjct: 251 FLHPSQRRVAYRTSYGGPVQVTGGPGTGKTVAALHRVKHLLGRSGD-GRILLTTYTNALA 309

Query: 76  AEMSH 80
           A +  
Sbjct: 310 AGLRD 314


>gi|113476147|ref|YP_722208.1| UvrD/REP helicase [Trichodesmium erythraeum IMS101]
 gi|110167195|gb|ABG51735.1| UvrD/REP helicase [Trichodesmium erythraeum IMS101]
          Length = 808

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTH------ILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +Q +A+       VSA  GSGK++       L   + R  L + H   L+ +T T++AA 
Sbjct: 48  QQQMANWQGGPLAVSAVPGSGKSYGMAIAAALT--IARYQLHSHH--QLIIVTFTRSAAT 103

Query: 77  EMSHRVLEIITAWSHLSD 94
            +  ++ +       L  
Sbjct: 104 NIKAQINKQCLEELSLPK 121


>gi|321459547|gb|EFX70599.1| hypothetical protein DAPPUDRAFT_309388 [Daphnia pulex]
          Length = 1389

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 42/189 (22%)

Query: 40   AGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSHRVLE-----------II 86
             G+GKTH++V  +  L+        + +L    T AA  EM+ R+L+            +
Sbjct: 893  PGTGKTHVIVFIINHLIGHKMGDVRNKVLYCAPTNAAVDEMTRRLLKFNQGSSEFNVLRM 952

Query: 87   TAWSHL----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
             +W+ L     +  L  ++ K++ +  +++   K  HLL   L      K        E+
Sbjct: 953  GSWARLHPDVKEATLEDKLAKLRSRIKHENPSRKELHLLKEKLVHLQSQK--------ES 1004

Query: 143  IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISND 201
            I+++      +   F          L  +  K     +   N+E E   A  + ++   +
Sbjct: 1005 IIKE------LNQDF----------LSPQRIKDLEEKLNEVNDEIETATALSQDIKKRQE 1048

Query: 202  EDIETLISD 210
            E IE +I D
Sbjct: 1049 EAIEKIIED 1057


>gi|329934855|ref|ZP_08284896.1| DNA helicase II [Streptomyces griseoaurantiacus M045]
 gi|329305677|gb|EGG49533.1| DNA helicase II [Streptomyces griseoaurantiacus M045]
          Length = 305

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74
            +  ++              V+   G+GKT   + RV  LL     P   +L  T+T A 
Sbjct: 138 FLHPSQRRVAHRVSYGGPVQVTGGPGTGKTVAALHRVKHLL--GRSPEGRVLLTTYTNAL 195

Query: 75  AAEMSH 80
           AA +  
Sbjct: 196 AAGLRE 201


>gi|220925307|ref|YP_002500609.1| putative deoxyribonuclease [Methylobacterium nodulans ORS 2060]
 gi|219949914|gb|ACL60306.1| putative deoxyribonuclease [Methylobacterium nodulans ORS 2060]
          Length = 368

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 16/68 (23%)

Query: 24 QLLASDPTRSAWVSAN----------AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          Q  A+    SAW+ A           AG+GKT  L +R+   +         L   +T  
Sbjct: 8  QQEAALRAVSAWLRAGEPQVFRLFGFAGTGKT-TLARRIAEDVEGGV-----LFCAYTGK 61

Query: 74 AAAEMSHR 81
          AA+ M  R
Sbjct: 62 AASVMRQR 69


>gi|323187169|gb|EFZ72483.1| hypothetical protein ECRN5871_4552 [Escherichia coli RN587/1]
          Length = 472

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 43/120 (35%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           ++A AG GKT I+   +   L   A P  +L LTHT A  A +  R              
Sbjct: 15  ITAPAGCGKTQIIADTLA--LYTGARP--VLILTHTNAGVATLRLR-------------- 56

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                                    +     +    ++ TI  F   ++  FP  + + +
Sbjct: 57  -------------------------MQRAGVSTAAYRIATIDGFAMRLVAMFPARSGLNA 91


>gi|301063700|ref|ZP_07204212.1| UvrD/REP helicase [delta proteobacterium NaphS2]
 gi|300442237|gb|EFK06490.1| UvrD/REP helicase [delta proteobacterium NaphS2]
          Length = 614

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRV 82
           D  RS  V + AGSGKT  L+  +  +  + A         +LC+T+T  A   +  R+
Sbjct: 18 IDENRSFSVISGAGSGKTQSLLTALSYIRDSKADELRKKDQKILCITYTNRAVGVIFSRL 77


>gi|269126776|ref|YP_003300146.1| Superfamily I DNA and RNA helicase-like protein [Thermomonospora
           curvata DSM 43183]
 gi|268311734|gb|ACY98108.1| Superfamily I DNA and RNA helicase-like protein [Thermomonospora
           curvata DSM 43183]
          Length = 861

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 15  DLISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLL----LANAHPSTLLCL 68
           D+++  + +QL  +AS+      +    G+GKT + + RV  LL      +  PS +L +
Sbjct: 189 DIVATIERDQLRLVASEYKGVLIIQGGPGTGKTAVGLHRVAWLLDPENKTSIKPSEILVV 248


>gi|330953431|gb|EGH53691.1| UvrD/REP helicase [Pseudomonas syringae Cit 7]
          Length = 830

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   ++++I+  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFISKLIDIMALW 204

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H  ++  + E+                               V+T H+    I      
Sbjct: 205 GHALEQKQAREV-------------------------------VRTFHS---RILPLVRS 230

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 231 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 290

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 291 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 346


>gi|331248548|ref|XP_003336897.1| hypothetical protein PGTG_18303 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309315887|gb|EFP92478.1| hypothetical protein PGTG_18303 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 544

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 9/122 (7%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           DL S  +     A  P     V    G+GKTH LV  +  L         ++    +  A
Sbjct: 17  DLNSSQQYAVKHALSPCPVTLVFGPPGTGKTHTLVSIIAALYARG---DRIIIAAASNLA 73

Query: 75  AAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
              ++ R+L+       +   + + D + S+ +            +   +  +   L   
Sbjct: 74  IDNIAERLLDLKLPITRLGHPARVLDSLSSSTLEYQLNTSDESEIIRDLKKEINQNLAKL 133

Query: 129 GG 130
             
Sbjct: 134 SA 135


>gi|330981310|gb|EGH79413.1| UvrD/REP helicase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 813

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   ++++++  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFISKLIDVMALW 204

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H+ ++  + E+                               V+T H+    I      
Sbjct: 205 GHVLEQKQAREL-------------------------------VRTFHS---RILPLVRS 230

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S     D       I +A++  L     D    NE  ++    
Sbjct: 231 LPGFEQLRAFENLSSQSSGLEEVDSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 290

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 291 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 346


>gi|330875041|gb|EGH09190.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 830

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 94/249 (37%), Gaps = 62/249 (24%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKA 73
           +  + ++  +    T S +V A AG+GK+  LV R+  LLL        + +  +T T+ 
Sbjct: 131 VQPSAAQWKMIFSDTPSTYVIAGAGAGKSTSLVVRI--LLLHHYLGFELNAMTVVTFTRE 188

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           +  +  +++++++  W H  ++                    +AR+L            V
Sbjct: 189 SRKDFINKLIDVMALWGHTLEQ-------------------KQARNL------------V 217

Query: 134 QTIHAFCEAIMQQFP----LEA--NITSHFAIADEEQSKKL---IEEAKKSTLASIMLD- 183
           +T H+    +++  P    L A  N++S  +  DE  S      I +A++  L     D 
Sbjct: 218 RTFHSRILPLVRSLPGFEQLRAFENLSSQSSGQDEADSNPFDLRINDAQRQQLNLCYRDL 277

Query: 184 --NNEELKKAFYEILEIS----------NDEDIETLISDIISNRT----ALKLIFFFFSY 227
             +NE  ++    +   +           D      ++++ S R           +  + 
Sbjct: 278 YASNERFREVLAPLYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAG 337

Query: 228 LWRRKIIEK 236
           +W  K IE 
Sbjct: 338 VWPIKGIEP 346


>gi|298674323|ref|YP_003726073.1| hypothetical protein Metev_0352 [Methanohalobium evestigatum
           Z-7303]
 gi|298287311|gb|ADI73277.1| conserved hypothetical protein [Methanohalobium evestigatum Z-7303]
          Length = 630

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 3   YHNSFQEHS--ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           + N+ +++S  +T+D    T  E+     P     VS   GSGKT ILV R + L   N 
Sbjct: 205 HRNNTKDNSIIKTLD----TDQEKFSKRIPYGHYMVSGVPGSGKTVILVARAVHLARENP 260

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
               +L LT+ ++    +  ++  I+ +     D
Sbjct: 261 E-WNILILTYNRS----LKSKLKNILKSMHKDLD 289


>gi|330943700|gb|EGH45993.1| UvrD/REP helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 656

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 36 VSANAGSGKTHILVQR--VLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
          V A AGSGK+  +V R  VLR  L     S L  +T T  +  + +++V E+   W
Sbjct: 11 VVAGAGSGKSTTMVLRLLVLRHYL-GIDFSNLTVVTFTVESKKDFANKVREVFKLW 65


>gi|226949371|ref|YP_002804462.1| type III restriction protein res subunit [Clostridium botulinum A2
           str. Kyoto]
 gi|226843765|gb|ACO86431.1| type III restriction protein res subunit [Clostridium botulinum A2
           str. Kyoto]
          Length = 1002

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 81/216 (37%), Gaps = 38/216 (17%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEI 85
            ++  +  +AGSGK++    L  R+  L   N +P   +++ +T           R    
Sbjct: 305 GKNYLIQHSAGSGKSNSIAWLAHRLSGLHDDNNNPIYKSIIVVT----------DR---- 350

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL--LITILETPGGLKVQTIHAFCEAI 143
                 + D  L   I +          + K +H   L   +     + + T        
Sbjct: 351 -----RVLDSQLQDTIYQFDHVLGVVECIDKKKHAVDLRDAINAGKRIIITT-------- 397

Query: 144 MQQFPL---EANITSHFAIADEEQSKKLIEEAKKSTLASI-MLDNNEELKKAFYEILEIS 199
           +Q+FP+   E     +FAI  +E       EA K    ++   D+  E  +A     E +
Sbjct: 398 LQKFPVIYKEIQTDGNFAIIVDEAHSSQTGEASKKLKKALTNTDDILEEYRAMENEAEEN 457

Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
             +D + ++ ++ S+     L FF F+   + K ++
Sbjct: 458 VKDDEDKMLDELASHGRIDNLSFFAFTATPKEKTLQ 493


>gi|184200504|ref|YP_001854711.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201]
 gi|183580734|dbj|BAG29205.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201]
          Length = 1241

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 8/135 (5%)

Query: 20  TKSEQLLASDPTR--SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
             ++Q +   P       V    G+G++ ++V+ V+R +     P  +L L  ++ +AA 
Sbjct: 27  DPAQQTVVDLPAGHGPVLVLGAPGTGRSTVVVEGVVRRIADGTDPQRMLVLAPSRESAAT 86

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +   V     A                  ++    ++     L   +L  P         
Sbjct: 87  LRDLVSRRAAATISTPLVRAWQAYAFDVLRRAQAEELLTGIDLPPVLLSGPEQ------D 140

Query: 138 AFCEAIMQQFPLEAN 152
           AF   +M+       
Sbjct: 141 AFLAEMMRGHATGLG 155


>gi|56963024|ref|YP_174751.1| ATP-dependent DNA helicase [Bacillus clausii KSM-K16]
 gi|56909263|dbj|BAD63790.1| ATP-dependent DNA helicase [Bacillus clausii KSM-K16]
          Length = 675

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y  S Q+ ++  D+++  ++EQ             +   AGSGKT + + R+  LL  
Sbjct: 160 LLYKLSEQKDNKLKDIVATIQAEQNAIIRHAIKEPLIIQGAAGSGKTTVALHRLAYLLYE 219


>gi|300932821|ref|ZP_07148077.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 1130

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           H S        D ++    +  L+ D ++   V    G+GKT  LV   L  + A     
Sbjct: 28  HTSPGSVHRQFDGLAGEFIQNSLSLDYSQPFVVLGGPGTGKTSFLVDAALAHIRAGGSAD 87

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSH 91
            ++ +T +K +A  + + +   ++    
Sbjct: 88  EIMFVTPSKESATRIRNEIFGALSGGEQ 115


>gi|85057365|ref|YP_456281.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789470|gb|ABC65202.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 1038

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 45/197 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L++ +K ++ + +      ++   AGSGKT IL++++ +       P  +L  T    A 
Sbjct: 2   LLNLSKEQKDIINSDASCMYIHGGAGSGKTTILIEKLRQK--EKEKPL-ILVAT---NAT 55

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +   + + +  +S L ++  S    +++    +  +                   ++T
Sbjct: 56  KNI---IYDKL--FSSLKEDYPSYNDDELEKYLKDNYE-------------------IRT 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQ-SKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+F  +              + I +E    +K I++  K  +  ++L  N++LK  F E
Sbjct: 92  FHSFAYS-----CYL-----KYNIFNETAKQRKFIDDETKLNILKLILKENQDLKLYFKE 141

Query: 195 ILEISNDEDIETLISDI 211
                       L+ ++
Sbjct: 142 ----QRKYSFRKLLQEL 154


>gi|213966994|ref|ZP_03395144.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301385178|ref|ZP_07233596.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059733|ref|ZP_07251274.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302134141|ref|ZP_07260131.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213928316|gb|EEB61861.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 830

 Score = 43.3 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 6/100 (6%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPS 63
            + SE +   +Q  + Q  +    T S +V A AG+GK+  LV R+  LLL        +
Sbjct: 121 SDVSEKLPAHAQPSAAQWKMIFSDTPSTYVIAGAGAGKSTSLVLRI--LLLHHYLGFELN 178

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
            +  +T T+ +  +  +++++++  W H  ++  + ++ +
Sbjct: 179 AMTVVTFTRESRKDFINKLIDVMALWGHTLEQKQARDLVR 218


>gi|330900322|gb|EGH31741.1| UvrD/REP helicase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 830

 Score = 43.3 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   ++++++  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFISKLIDVMALW 204

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H+ ++  + E+                               V+T H+    I      
Sbjct: 205 GHVLEQKQAREL-------------------------------VRTFHS---RILPLVRS 230

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S     D       I +A++  L     D    NE  ++    
Sbjct: 231 LPGFEQLRAFENLSSQSSGLEEVDSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 290

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 291 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 346


>gi|218288400|ref|ZP_03492690.1| UvrD/Rep helicase family protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241373|gb|EED08547.1| UvrD/Rep helicase family protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 712

 Score = 43.3 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y  +  + S   D+++  ++EQ  ++ +D      +   AGSGKT + + R+  LL  
Sbjct: 183 LLYRLADSKDSRLHDIVATIQAEQNEVIRADKNVPILIQGVAGSGKTTVALHRLAYLLYQ 242

Query: 59  NAHPSTL 65
             HP  L
Sbjct: 243 --HPEKL 247


>gi|90019844|ref|YP_525671.1| UvrD/REP helicase family protein [Saccharophagus degradans 2-40]
 gi|89949444|gb|ABD79459.1| UvrD/REP helicase [Saccharophagus degradans 2-40]
          Length = 614

 Score = 43.3 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 44 KTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRV 82
          KT  L Q+   LL       P+ +L ++    AA  +  RV
Sbjct: 43 KTEFLAQKAAYLLQTGICSDPNRILAISFKNDAARVLKERV 83


>gi|254519041|ref|ZP_05131097.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226912790|gb|EEH97991.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 747

 Score = 43.3 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLL---LANA 60
           +    S+   +++  + EQ         ++  V   AGSGKT + + R+  LL       
Sbjct: 196 AKSSDSKMKAIVTTIQREQNKIIRNQLYKNLIVQGPAGSGKTSVALHRIAYLLYKHREKI 255

Query: 61  HPSTLLC 67
            P  +L 
Sbjct: 256 GPQNILI 262


>gi|256005662|ref|ZP_05430619.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|255990350|gb|EEU00475.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|316941015|gb|ADU75049.1| UvrD/REP helicase [Clostridium thermocellum DSM 1313]
          Length = 579

 Score = 43.3 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRV 82
          VSA  G+GKTH LV  +  +L  +    +   + C+T+T  A   +  R+
Sbjct: 17 VSAGPGAGKTHWLVNHIKNVLQNSTRLSNARKIACITYTNIAVETILKRL 66


>gi|111225671|ref|YP_716465.1| putative DNA helicase [Frankia alni ACN14a]
 gi|111153203|emb|CAJ64952.1| putative DNA helicase [Frankia alni ACN14a]
          Length = 719

 Score = 43.3 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
                V+  AG+GKT   + R + L  A A+P   +L  T T+  A  +   ++++    
Sbjct: 261 GGPFRVTGGAGTGKTVTALHRAVHL--AGAYPNDKILFTTFTRTLAQSIKENLVKLAGPA 318

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
              + ++L+ +    +      +D  K R +
Sbjct: 319 ILQTVDVLTVDGLARRVLAATDTDREKIRKV 349


>gi|325124331|gb|ADY83854.1| exonuclease V, alpha subunit [Acinetobacter calcoaceticus PHEA-2]
          Length = 583

 Score = 43.3 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           + +DL++    +  L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 119 DYLDLLTDAHQQAALQMVARQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 177

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 178 TGKAAQRMQEALQNSFNDPKLLESGLVSEELRNQGTQTIHR 218


>gi|282898446|ref|ZP_06306436.1| hypothetical protein CRD_02984 [Raphidiopsis brookii D9]
 gi|281196612|gb|EFA71518.1| hypothetical protein CRD_02984 [Raphidiopsis brookii D9]
          Length = 328

 Score = 43.3 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 15/106 (14%)

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           M  R+  +        D+    +  +     P +        +  T ++    +   T H
Sbjct: 1   MKDRIQRLFA------DQFAINQYGQKLDLLPAQQQTEVISSVYRTYIKN---IWCGTFH 51

Query: 138 AFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTL 177
           +    I++    ++  E       +F+I DE   + LI+E     L
Sbjct: 52  SLFSRILRFDVEKYQDEKGRHWQKNFSIFDESDVQTLIKEIVTKQL 97


>gi|307190792|gb|EFN74661.1| Probable helicase with zinc finger domain [Camponotus floridanus]
          Length = 913

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 16  LISQTKSEQLLASDPTR------SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           L +Q + + + A   ++         +    G+GKT  +   VLR+L+ N+  + +L  T
Sbjct: 434 LFNQEQKQAVAAIALSKTKASSPPVLLLGPFGTGKTFTIAH-VLRMLVKNSD-NRILLCT 491

Query: 70  HTKAAA 75
           H+ +AA
Sbjct: 492 HSNSAA 497


>gi|184156690|ref|YP_001845029.1| exonuclease V subunit alpha [Acinetobacter baumannii ACICU]
 gi|294842007|ref|ZP_06786690.1| exonuclease V, alpha subunit [Acinetobacter sp. 6014059]
 gi|183208284|gb|ACC55682.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase
           superfamily I member [Acinetobacter baumannii ACICU]
 gi|322506577|gb|ADX02031.1| recD [Acinetobacter baumannii 1656-2]
 gi|323516456|gb|ADX90837.1| exonuclease V subunit alpha [Acinetobacter baumannii TCDC-AB0715]
          Length = 583

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E +DL++    +  L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 119 EHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 177

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++SAE+     +  ++
Sbjct: 178 TGKAAQRMQEALQNSFNDPKLLESGLISAELRNQSTQTIHR 218


>gi|123478695|ref|XP_001322509.1| regulator of nonsense transcripts 1 [Trichomonas vaginalis G3]
 gi|121905356|gb|EAY10286.1| regulator of nonsense transcripts 1, putative [Trichomonas
           vaginalis G3]
          Length = 803

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 48/148 (32%), Gaps = 21/148 (14%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +++++ +    +   R   +    G+GKT ++   V   + A   P  +L LT +  AA 
Sbjct: 336 LNESQQKATKTALKQRFTLIQGPPGTGKTTVIAAIVASFVKAGVTP--VLVLTQSNIAAD 393

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
             + R+ +       +               +       +        +E  G +     
Sbjct: 394 FATRRISQTGVNVIRVLAFNKETNPNDDTNYETIPDFDIRPFTSHAKAVERYGEV----F 449

Query: 137 HAFCEA---------------IMQQFPL 149
              C++               I++++P+
Sbjct: 450 EGLCQSSDQNDRTQARNLEKDIIREYPV 477


>gi|288920291|ref|ZP_06414604.1| Superfamily I DNA and RNA helicase-like protein [Frankia sp.
          EUN1f]
 gi|288348315|gb|EFC82579.1| Superfamily I DNA and RNA helicase-like protein [Frankia sp.
          EUN1f]
          Length = 581

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          +QL   +   S  V A  G+GKT  +V+R +R          +  ++ T AA   +  R
Sbjct: 13 DQLALIEKPGSRMVRACPGAGKTQSIVERFIRRPGLEGDRLGVALISFTNAAITAVHER 71


>gi|255601103|ref|XP_002537605.1| conserved hypothetical protein [Ricinus communis]
 gi|223515761|gb|EEF24779.1| conserved hypothetical protein [Ricinus communis]
          Length = 125

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 48/127 (37%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKAAAAEMSH 80
              D  RS  + A AG+GKT+ L + + RL+   +         + C+T+T  A  E+  
Sbjct: 18  ACLDEGRSFRLEAGAGAGKTYSLEKALRRLIETRSQELLRRHQQVACITYTNVAKDEIIA 77

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           R                                            ++   ++ +T+H FC
Sbjct: 78  R-------------------------------------------TQSHPAIRAETVHGFC 94

Query: 141 EAIMQQF 147
            ++++ F
Sbjct: 95  WSLLKDF 101


>gi|257052519|ref|YP_003130352.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691282|gb|ACV11619.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 613

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 39  NAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
             GSGKT  L+ RV  LL   +     +L +++T+AAAAE+  R+ E +     +S   L
Sbjct: 14  GPGSGKTTALLDRVEELLEDDDVDVRDVLVVSYTRAAAAEVRERLAERL----DVSPRSL 69

Query: 98  SAEITKIQGKKPNKSDMSK 116
              +  +  K     ++S+
Sbjct: 70  KGNVCTMHAKAYELLNLSR 88


>gi|321468173|gb|EFX79159.1| hypothetical protein DAPPUDRAFT_104638 [Daphnia pulex]
          Length = 322

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 58/145 (40%), Gaps = 37/145 (25%)

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           A AEM++ +      W+  S+++L  E+  +                         GL +
Sbjct: 130 AVAEMANCLQRRNRQWATHSEDLLKEEMKAL-------------------------GLPI 164

Query: 134 QTIHAFCEAIMQ---QFPLEANITS-HFAIADEEQSKKLIEEAKKSTLASIMLDNNE-EL 188
            T       I++   +FPLEA ++  HF I DE +++ L ++ + +      +  +    
Sbjct: 165 ST------DILKPVHRFPLEAGLSPAHFTILDEIETQSL-KKIQDTVFHEADIGKDPVAK 217

Query: 189 KKAFYEILEISNDEDIETLISDIIS 213
           +++  E+  +   + +  +   I+ 
Sbjct: 218 QQSLIELTNLLKRQRVFEVSKAILH 242


>gi|148656383|ref|YP_001276588.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148568493|gb|ABQ90638.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
          Length = 710

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 80/229 (34%), Gaps = 61/229 (26%)

Query: 16  LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           L+  T  ++ L + D      V    G+GK+ + + RV RLL      +++L  T+T A 
Sbjct: 221 LLRLTPEQERLINQDRRGPILVRGGPGTGKSTLALYRVQRLLEQGV--TSVLFTTYTNA- 277

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
                      +  +S          +T++ G  P+                   G+KV 
Sbjct: 278 -----------LVTYS-------EQLLTRLLGAPPDA-----------------WGVKVT 302

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI------------EEAKKST-LASIM 181
           T+ +        +   A        A E Q+  L+             EA + T LA++ 
Sbjct: 303 TVDSL------AYHYFARGWGKPTFATEGQALALLAMSLREAEIPAANEADRQTRLAALE 356

Query: 182 LDNNEELKKAFYEILEISNDEDIET-LISDIISNRTALKLIFFFFSYLW 229
               E L + F  I+E  N    E  L+ +    RT LK        LW
Sbjct: 357 HLGQEYLLQEFLHIIEARNISSQEEYLVIERHGRRTPLK--PAIREALW 403


>gi|226360932|ref|YP_002778710.1| exodeoxyribonuclease V alpha chain [Rhodococcus opacus B4]
 gi|226239417|dbj|BAH49765.1| exodeoxyribonuclease V alpha chain [Rhodococcus opacus B4]
          Length = 623

 Score = 43.3 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 18  SQTKSEQLLASDPTRSAW---VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-TKA 73
           + +   Q +A+    + W   V    G+GKTH  V R+L LL     P   + L   T  
Sbjct: 173 APSPDRQRIAAAVAATQWTSVVVGGPGTGKTHT-VARLLALLTRQPGPGRRIALAAPTGK 231

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           AAA +   V E   A   L  E+ +  + ++ G +  +    +
Sbjct: 232 AAARLQESVREQADALG-LPPELNAMTLHRLLGWQRGRGARFR 273


>gi|162454234|ref|YP_001616601.1| hypothetical protein sce5957 [Sorangium cellulosum 'So ce 56']
 gi|161164816|emb|CAN96121.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 714

 Score = 43.3 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 9   EHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRL 55
           +H++  D+ +   ++Q  A  + P R   V  +AGSGKT + + R+ R+
Sbjct: 234 DHAKAADVTALLDADQYAAVCAPPERPLLVLGSAGSGKTTVALHRLARI 282


>gi|241589834|ref|YP_002979859.1| DNA helicase II [Ralstonia pickettii 12D]
 gi|241664375|ref|YP_002982735.1| DNA helicase II [Ralstonia pickettii 12D]
 gi|309782955|ref|ZP_07677675.1| DNA helicase [Ralstonia sp. 5_7_47FAA]
 gi|240866402|gb|ACS64063.1| DNA helicase II [Ralstonia pickettii 12D]
 gi|240868546|gb|ACS66205.1| DNA helicase II [Ralstonia pickettii 12D]
 gi|308918379|gb|EFP64056.1| DNA helicase [Ralstonia sp. 5_7_47FAA]
          Length = 585

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTHTKAAAAEMSHRVLE 84
            RS  + A AG+GKT+ LV+ + +L               + C+T+T  A  ++  R+  
Sbjct: 26  GRSFVLDAGAGAGKTYSLVEGLKKLCAPTVADRLRRDGQQIACITYTNVAKDQVIDRIQG 85

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
                     + L + +       P++  + +A       L T    +V
Sbjct: 86  NSLVRVSTIHDFLWSTLQ------PHQQALRQALLDFNAALPTGSSRRV 128


>gi|209883313|ref|YP_002287170.1| UvrD/REP helicase [Oligotropha carboxidovorans OM5]
 gi|209871509|gb|ACI91305.1| UvrD/REP helicase [Oligotropha carboxidovorans OM5]
          Length = 567

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 69/226 (30%), Gaps = 55/226 (24%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSH 80
            ++           V    GSGKT  +     +   A+  P   +L L+ ++AA      
Sbjct: 7   EKRKAIIAQQGHLLVLGGPGSGKT-TIALFKAQKRFADLKPGQEILFLSFSRAA------ 59

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
            + +++     +        +T                              VQT HAFC
Sbjct: 60  -IRQVLLRCKEILTPAERRTVT------------------------------VQTYHAFC 88

Query: 141 EAIMQQFPLEAN------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
             +++             +            ++L + A +   +        E+    ++
Sbjct: 89  MEMLEAHGRLLGGKPIRFLYPG--------DERLQKSAFEGDWSVERRRQAAEMGLYSFD 140

Query: 195 ILEISNDEDIET--LISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238
           +      E  E    + D+I++R  + ++  F      +  I ++L
Sbjct: 141 LFAAGTAELFERCGALRDLIADRFPMIIVDEFQDTDDNQWRIVQAL 186


>gi|188585523|ref|YP_001917068.1| superfamily I DNA helicase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350210|gb|ACB84480.1| superfamily I DNA helicase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 755

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLIS--QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHP 62
              ++  D++S  Q +  Q++ +D  +   V   AGSGKT I + R+  L+     + +P
Sbjct: 185 SADNKLKDIVSTIQAEQNQVIRADLNKPLIVQGTAGSGKTTIALHRIAYLIYTYEKSFNP 244

Query: 63  STLLCL 68
              + +
Sbjct: 245 ENFMII 250


>gi|269957111|ref|YP_003326900.1| hypothetical protein Xcel_2325 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305792|gb|ACZ31342.1| conserved hypothetical protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 759

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 34/135 (25%)

Query: 21  KSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             +Q  A  D   S  +S  AG+GKT +L+ R  R L      + ++  T+ K       
Sbjct: 279 PEQQDYAFRDRRGSFRLSGGAGTGKTVVLLHR-ARHLARQNPHARIILTTYNK------- 330

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
                  T    L D +L+ + +     +P                    G+ + T+ A 
Sbjct: 331 -------TLAQSLRDNLLTLDRSVRLAAEPGGE-----------------GVHITTVDAI 366

Query: 140 CEAIMQQFPLEANIT 154
              ++ ++  E  + 
Sbjct: 367 AWRLLNRY-REFGLP 380


>gi|153954390|ref|YP_001395155.1| hypothetical protein CKL_1765 [Clostridium kluyveri DSM 555]
 gi|146347271|gb|EDK33807.1| Conserved hypothetical protein with LexA domain [Clostridium
          kluyveri DSM 555]
          Length = 815

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
          + ++L+   P+  + +   AGSGKT + V R+  LL          +L +T  +
Sbjct: 6  EQKKLVQLRPSGHSLIRGVAGSGKTTVAVNRISFLLNHYCFEKQDRILVITFNR 59


>gi|289648672|ref|ZP_06480015.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 813

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 130 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFIGKLIEVMALW 187

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H++ +  + ++                               V+T H+    I      
Sbjct: 188 GHVTGQKQARDL-------------------------------VRTFHS---RILPLVRS 213

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 214 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 273

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 274 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 329


>gi|285002428|ref|YP_003422492.1| helicase-2 [Pseudaletia unipuncta granulovirus]
 gi|197343688|gb|ACH69503.1| helicase-2 [Pseudaletia unipuncta granulovirus]
          Length = 457

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 23/136 (16%)

Query: 14  IDLISQTKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL- 66
           +D  +Q   +Q    D           +VS +AG+GK+ +L      L     +   ++ 
Sbjct: 20  LDAPAQLNEQQQRIFDYVTQRSSFEPIFVSGSAGTGKSALL----KSLRTHWINHKKIVW 75

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            ++ T  AA      V           D   +          PN   + +   +   +L+
Sbjct: 76  VVSFTNLAARN----VDGQTIHKQFGFDFKCNLNNGNRHAGAPNYFILDEVSMVPSKMLQ 131

Query: 127 TPGGLKVQTIHAFCEA 142
                    IH F + 
Sbjct: 132 N--------IHTFFQQ 139


>gi|260556279|ref|ZP_05828498.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii ATCC
           19606]
 gi|260410334|gb|EEX03633.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 583

 Score = 42.9 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E +DL++    +  L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 119 EHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 177

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 178 TGKAAQRMQEALQNSFNDPKLLESGLMSDELRNQSTQTIHR 218


>gi|300727401|ref|ZP_07060810.1| conserved hypothetical protein [Prevotella bryantii B14]
 gi|299775281|gb|EFI71880.1| conserved hypothetical protein [Prevotella bryantii B14]
          Length = 1148

 Score = 42.9 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 34  AWVSANAGSGKT-HILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH----------RV 82
             +    G+GKT   L   V   L +     T+L +++T  A  E+S           R+
Sbjct: 730 FLLVGPPGTGKTSRALQFMVKEALASG---KTILLMSYTNRAVDEISEMLVDNNIDFLRI 786

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
               +        +L   I +    +  +  + +AR ++ T         +  I  F  +
Sbjct: 787 GNAYSCDKRFLPYLLEKTIEQFPKMQALQKQIQQARIIVGTTSMISSRPYIFNIKHFDLS 846

Query: 143 IM 144
           I+
Sbjct: 847 II 848


>gi|218191424|gb|EEC73851.1| hypothetical protein OsI_08612 [Oryza sativa Indica Group]
          Length = 979

 Score = 42.9 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE------IIT 87
             +    G+GKT +L + ++R +        +L    + AA   M  R+         + 
Sbjct: 522 LIIQGPPGTGKTVLLTELIVRAVQQG---ENVLVTAPSNAAVDNMVERLSNTGLNIVRVG 578

Query: 88  AWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITIL 125
             + +S  + S  + +I  ++    + ++ + R  L   L
Sbjct: 579 NPARISPSVASKSLAEIVNRRLEQFRKELERKRSDLRKDL 618


>gi|152989216|ref|YP_001350710.1| DNA helicase II [Pseudomonas aeruginosa PA7]
 gi|150964374|gb|ABR86399.1| DNA helicase II [Pseudomonas aeruginosa PA7]
          Length = 619

 Score = 42.9 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 70/199 (35%), Gaps = 54/199 (27%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             + EQL  S       +   AGSGKT IL  R   L    + P  +L L + ++ A   
Sbjct: 233 DLQQEQLARSLGDGHRVIHGVAGSGKTMILAYRCKHLAALASKP--ILVLCYNRSLAG-- 288

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+ +++                                            +KV++ HA
Sbjct: 289 --RLNQLMVERGLG------------------------------------DKVKVRSFHA 310

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK---------STLASIMLDNNEELK 189
           +C  ++ +  LE        ++  E+ + ++ +A           +  A++++D   + +
Sbjct: 311 WCRELLVEHGLEL---PGATLSVNEKMETMVRQAVDGANDGRIPGARYAAVLIDEGHDFQ 367

Query: 190 KAFYEILEISNDEDIETLI 208
             ++ +     D D  +L+
Sbjct: 368 PDWFRLAVRMVDGDSGSLL 386


>gi|66045747|ref|YP_235588.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a]
 gi|63256454|gb|AAY37550.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a]
          Length = 797

 Score = 42.9 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   ++++++  W
Sbjct: 114 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFISKLIDVMALW 171

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H  ++  + E+                               V+T H+    I      
Sbjct: 172 GHALEQKQAREV-------------------------------VRTFHS---RILPLVRS 197

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 198 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 257

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 258 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 313


>gi|330868031|gb|EGH02740.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 813

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 130 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFIGKLIEVMALW 187

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H++ +  + ++                               V+T H+    I      
Sbjct: 188 GHVTGQKQARDL-------------------------------VRTFHS---RILPLVRS 213

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 214 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 273

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 274 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 329


>gi|257487783|ref|ZP_05641824.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 406

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 128 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFIGKLIEVMALW 185

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H++ +  + ++                               V+T H+    I      
Sbjct: 186 GHVTGQKQARDL-------------------------------VRTFHS---RILPLVRS 211

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 212 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 271

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 272 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 327


>gi|71012553|ref|XP_758509.1| hypothetical protein UM02362.1 [Ustilago maydis 521]
 gi|46098167|gb|EAK83400.1| hypothetical protein UM02362.1 [Ustilago maydis 521]
          Length = 1604

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 12   ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTH 70
            + +  ++ T+++ +      R + +    G+GKT  +V   ++LL  +   P  ++   H
Sbjct: 1016 DPLPDLNSTQTQAVAMMLRERVSLIQGPPGTGKTRTIVT-AIKLLKQDFQVPHPIMLAAH 1074

Query: 71   TKAAAAEMSH-------RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            T  A   ++        RV+  I   +     I    +     + P K  + + +  L T
Sbjct: 1075 TNVAVDNLADGCIKAGLRVV-RIGPSARARAGIDQYTLDAYFLRHPAKQRLDQIKRQLDT 1133

Query: 124  I 124
            +
Sbjct: 1134 L 1134


>gi|330892544|gb|EGH25205.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 477

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 127 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFIGKLIEVMALW 184

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H++ +  + ++                               V+T H+    I      
Sbjct: 185 GHVTGQKQARDL-------------------------------VRTFHS---RILPLVRS 210

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 211 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 270

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 271 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 326


>gi|320329018|gb|EFW85017.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 813

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 130 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFIGKLIEVMALW 187

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H++ +  + ++                               V+T H+    I      
Sbjct: 188 GHVTGQKQARDL-------------------------------VRTFHS---RILPLVRS 213

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 214 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 273

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 274 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 329


>gi|320324037|gb|EFW80120.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|330880653|gb|EGH14802.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 830

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFIGKLIEVMALW 204

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H++ +  + ++                               V+T H+    I      
Sbjct: 205 GHVTGQKQARDL-------------------------------VRTFHS---RILPLVRS 230

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 231 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 290

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 291 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 346


>gi|313811488|gb|EFS49202.1| conserved domain protein [Propionibacterium acnes HL083PA1]
 gi|313831229|gb|EFS68943.1| conserved domain protein [Propionibacterium acnes HL007PA1]
 gi|313834251|gb|EFS71965.1| conserved domain protein [Propionibacterium acnes HL056PA1]
 gi|314974105|gb|EFT18201.1| conserved domain protein [Propionibacterium acnes HL053PA1]
 gi|314976605|gb|EFT20700.1| conserved domain protein [Propionibacterium acnes HL045PA1]
 gi|314984268|gb|EFT28360.1| conserved domain protein [Propionibacterium acnes HL005PA1]
 gi|315095449|gb|EFT67425.1| conserved domain protein [Propionibacterium acnes HL038PA1]
 gi|327328493|gb|EGE70255.1| UvrD/Rep helicase [Propionibacterium acnes HL096PA2]
 gi|327444280|gb|EGE90934.1| conserved domain protein [Propionibacterium acnes HL043PA2]
 gi|327444840|gb|EGE91494.1| conserved domain protein [Propionibacterium acnes HL043PA1]
 gi|328759928|gb|EGF73512.1| UvrD/Rep helicase [Propionibacterium acnes HL099PA1]
          Length = 445

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|313634898|gb|EFS01304.1| type III restriction protein, res subunit [Listeria seeligeri FSL
           N1-067]
          Length = 825

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 89/230 (38%), Gaps = 46/230 (20%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAA 76
            E +      ++  +  +AGSGKT+    L  R+ ++   +     ++++ +T       
Sbjct: 294 EEDVRKVSVGQNYLIQHSAGSGKTNSISWLAHRLSKMHTQDNKAIFNSVIVIT------- 346

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
               R          + D+ L   + +++ K      + K    L   +++   + + T 
Sbjct: 347 ---DR---------RVLDKQLQDAVYQLEHKAGTVERIDKDSTQLAQAIQSSTRIVITT- 393

Query: 137 HAFCEAIMQQFPLEANITSHFA------IADEEQSKKLIE--EAKKSTLASIMLDNNEEL 188
                  +Q+FP   +  +  +      + DE  S +  +  +A    L+++ L+   E 
Sbjct: 394 -------LQKFPYVLDKLAKLSNKQYAIVIDEAHSSQGGKSSKAMSQVLSNMSLEEAYEQ 446

Query: 189 KKAFYEILEISNDEDIETLI-SDIISNRTALKLIFFFFSYLWRRKIIEKS 237
            +   E     N  D+E +I  DI+ +     + +F F+   + K +E+ 
Sbjct: 447 DRLIEE-----NLTDVEEMIVEDIVKSGKQTNVSYFAFTATPKPKTLERF 491


>gi|298251754|ref|ZP_06975557.1| DNA helicase [Ktedonobacter racemifer DSM 44963]
 gi|297546346|gb|EFH80214.1| DNA helicase [Ktedonobacter racemifer DSM 44963]
          Length = 1519

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 16  LISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
                 +EQL  +   D   +  V    G+GKTH +   +  LL       ++L  +HT 
Sbjct: 378 FSKPANTEQLEIARRLDHYGAVLVQGPPGTGKTHTIANLLGHLLAQG---KSVLVTSHTS 434

Query: 73  AAAAEMSHRVLE--------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            A   +  +V+E        I+   S    E     IT+        +   +AR L    
Sbjct: 435 KALKVLREKVVEPLQPLCVSILEDDSRKQMEWAIDTITERLSSINVHALEQEARRLTQQR 494

Query: 125 LETPGGLK 132
           ++    L+
Sbjct: 495 IDLIEELR 502


>gi|305679906|ref|ZP_07402716.1| UvrD/REP helicase [Corynebacterium matruchotii ATCC 14266]
 gi|305660526|gb|EFM50023.1| UvrD/REP helicase [Corynebacterium matruchotii ATCC 14266]
          Length = 1079

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
            AGSG T +L+  V R + A   P  +L +  +K AA+ +   ++  +    + S   + 
Sbjct: 66  PAGSGVTSLLLDTVARRIEAGEDPERILIVAASKQAASRLRRGIVARVATSHYKSAGTMV 125

Query: 99  AEITKIQGKKPNKSDMSKAR 118
             +  +      +    K R
Sbjct: 126 RSVHSLAFALLRRMRDEKLR 145


>gi|225020701|ref|ZP_03709893.1| hypothetical protein CORMATOL_00708 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946647|gb|EEG27856.1| hypothetical protein CORMATOL_00708 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 1079

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
            AGSG T +L+  V R + A   P  +L +  +K AA+ +   ++  +    + S   + 
Sbjct: 66  PAGSGVTSLLLDTVARRIEAGEDPERILIVAASKQAASRLRRGIVARVATSHYKSAGTMV 125

Query: 99  AEITKIQGKKPNKSDMSKAR 118
             +  +      +    K R
Sbjct: 126 RSVHSLAFALLRRMRDEKLR 145


>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
 gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
          Length = 528

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 17/133 (12%)

Query: 7   FQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILV----QRVLRLLLANA 60
             +  E +   + T  +Q    A+   R    SAN G+GKT   V    QR+     A A
Sbjct: 19  LLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSLQRIATTARAEA 78

Query: 61  H--PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
              P  +L LT T+    E++ +VLE +   S         +   I G  P +  +   R
Sbjct: 79  AWGP-RVLVLTPTR----ELASQVLESVRNLSKFG----RIQTGTILGGMPYRQQLEMLR 129

Query: 119 HLLITILETPGGL 131
             +  I+ TPG L
Sbjct: 130 RRVDLIVATPGRL 142


>gi|154249370|ref|YP_001410195.1| ribonuclease H [Fervidobacterium nodosum Rt17-B1]
 gi|154153306|gb|ABS60538.1| ribonuclease H [Fervidobacterium nodosum Rt17-B1]
          Length = 754

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 2  IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
          ++ N  Q+++ T D I   K  +    D      +  +AG+GKT  L+ + +R L     
Sbjct: 1  MFLNFLQQYNLTKDQIHAAKKLEDFIYDYLDFLIIQGSAGTGKTF-LISQYVRYLFEKGK 59

Query: 62 PSTLLCLT 69
             +L  T
Sbjct: 60 SFVILAPT 67


>gi|71736159|ref|YP_274858.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556712|gb|AAZ35923.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 830

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFIGKLIEVMALW 204

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H++ +  + ++                               V+T H+    I      
Sbjct: 205 GHVTGQKQARDL-------------------------------VRTFHS---RILPLVRS 230

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 231 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 290

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 291 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 346


>gi|313773653|gb|EFS39619.1| conserved domain protein [Propionibacterium acnes HL074PA1]
          Length = 312

 Score = 42.9 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 148 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 194


>gi|329937000|ref|ZP_08286629.1| type I restriction protein [Streptomyces griseoaurantiacus M045]
 gi|329303607|gb|EGG47492.1| type I restriction protein [Streptomyces griseoaurantiacus M045]
          Length = 1060

 Score = 42.9 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 51/233 (21%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--------------------STLLC 67
            ++  V A+AGSGK++    L  R L  L A+  P                      ++ 
Sbjct: 304 GQNYLVMASAGSGKSNTIGWLTHR-LSDLHADTDPTTLDPDALANDRIKPGEPVFDKVIV 362

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +T              +     + L + + S   T     K ++   +K+  L   +   
Sbjct: 363 IT--------------DRRNLDAQLRETVGSFSQTDGLVVKVDEKHGAKSEQLARALSRD 408

Query: 128 PGGLKVQTIHAFCEAI--MQQFPLEANITSHFAI-ADEEQSKKLIEE--AKKSTLASIML 182
            G +   T+H+F   +  +++ P E    S FAI  DE  S +  +   A KS L  + L
Sbjct: 409 TGKIVTVTLHSFPALLDYIKRNPTEIK-GSRFAIVVDEAHSSQSGDAATAVKSALRDLGL 467

Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           D + + K A    ++       + L +  +    A  L +F F+   + K +E
Sbjct: 468 DADTDEKGATTVTVD-------DKLKAKAVERSQAANLSYFAFTATPKAKTLE 513


>gi|294624884|ref|ZP_06703540.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600803|gb|EFF44884.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1179

 Score = 42.9 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 12/76 (15%)

Query: 135 TIHAFCEAIMQQFPLEAN--------ITSHFAIADEEQSKKLIEEAKKSTLAS----IML 182
           TIH FC  ++++  LE+         + +   +  E  +    + A  + +A     +  
Sbjct: 3   TIHGFCARVLREHALESGQAFAAPELLANDRELLGEVAADLWRQRAADAVMAEDLIALWS 62

Query: 183 DNNEELKKAFYEILEI 198
              E L      ++  
Sbjct: 63  GGPEALASDLRALVRH 78


>gi|330985349|gb|EGH83452.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 813

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 130 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFIGKLIEVMALW 187

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H++ +  + ++                               V+T H+    I      
Sbjct: 188 GHVTGQKQARDL-------------------------------VRTFHS---RILPLVRS 213

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 214 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 273

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 274 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 329


>gi|298487234|ref|ZP_07005283.1| UvrD/REP helicase family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158258|gb|EFH99329.1| UvrD/REP helicase family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 830

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 68/236 (28%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFKLNAMTVVTFTRESRKDFIGKLIEVMALW 204

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI------ 143
            H++ +  + ++                               V+T H+    I      
Sbjct: 205 GHVTGQKQARDL-------------------------------VRTFHS---RILPLVRS 230

Query: 144 ------MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD---NNEELKK---- 190
                 ++ F   ++ +S    AD       I +A++  L     D    NE  ++    
Sbjct: 231 LPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLCYRDLYAGNERFREVMAP 290

Query: 191 ------AFYEILEISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                    E+     D      ++++ S R           +  +  W  K IE 
Sbjct: 291 LYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 346


>gi|116621024|ref|YP_823180.1| ATP-dependent nuclease subunit B-like protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224186|gb|ABJ82895.1| ATP-dependent nuclease subunit B-like protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 897

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 35  WVSANAGSGK-THILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            +S  AGSGK T++L  R    L        LL  T T   A  + +R+      +    
Sbjct: 3   LLSGAAGSGKTTYVLA-RFREALATGNTSVRLLVPTATM--AQHLQNRLAREGFVFRRGQ 59

Query: 94  DEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
            + LS  +       P      +          +  P   +V   H FC ++ +     A
Sbjct: 60  IQTLSGFLRPWTTDLPEVSPPVLHLLVEQAARRVARPEFERVTQFHGFCASLAKTIAEFA 119


>gi|308177922|ref|YP_003917328.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
 gi|307745385|emb|CBT76357.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 1070

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA----EMSHRVLEIITA 88
              V+   G+GKTH+L+   +  L A   P +LL +  T+  AA    E+S R     T 
Sbjct: 27  PVLVTGAPGTGKTHLLIDTAVAHLDAGLDPQSLLIIGPTRLTAASIRDELSRRAQRTFTE 86

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
               +    + ++ +    +     + +A  LL
Sbjct: 87  PVVRTWSSYAFDLIRRARVEGLLPQLERAPRLL 119


>gi|55377781|ref|YP_135631.1| DNA helicase [Haloarcula marismortui ATCC 43049]
 gi|55230506|gb|AAV45925.1| DNA helicase [Haloarcula marismortui ATCC 43049]
          Length = 911

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ID          LA      A V    G+GKT+ L + V  L+        +L    T  
Sbjct: 535 IDNNDAQNEAVQLAVGAEDFALVHGPPGTGKTYTLARMVRALVARG---DRVLLSAFTNR 591

Query: 74  AAAEMSH 80
           A   +  
Sbjct: 592 AVDNLLE 598


>gi|195583195|ref|XP_002081409.1| GD25725 [Drosophila simulans]
 gi|194193418|gb|EDX06994.1| GD25725 [Drosophila simulans]
          Length = 1316

 Score = 42.9 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 16  LISQTKSE----QLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           LIS    +    + +A  P       V    G+GKT  +V+ + +L +     + +L L+
Sbjct: 616 LISSNPEQMQAVREIALSPRLKAPYIVFGPPGTGKTATIVEAIYQLYINRPE-THILVLS 674

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
            +  A  E++ R+L+ I          L+   +    ++ +  D
Sbjct: 675 GSNTACDEVALRLLKAIAKAPKSQPRPLTRIFSASCDRRIDNID 718


>gi|195334212|ref|XP_002033778.1| GM20239 [Drosophila sechellia]
 gi|194125748|gb|EDW47791.1| GM20239 [Drosophila sechellia]
          Length = 1321

 Score = 42.9 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 16  LISQTKSE----QLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           LIS    +    + +A  P       V    G+GKT  +V+ + +L +     + +L L+
Sbjct: 610 LISSNPEQMQAVREIALSPRLKAPYIVFGPPGTGKTATIVEAIYQLYINRPE-THILVLS 668

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
            +  A  E++ R+L+ I          L+   +    ++ +  D
Sbjct: 669 GSNTACDEVALRLLKAIAKAPKSQPRPLTRIFSASCDRRIDNID 712


>gi|193654845|ref|XP_001950248.1| PREDICTED: probable helicase with zinc finger domain-like
           [Acyrthosiphon pisum]
          Length = 1702

 Score = 42.9 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 12  ETIDL-ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           E ID  ++  + E ++A     +       +    G+GKT+ L Q + + LL +   + +
Sbjct: 797 EIIDKKLNVKQREAVIAITTPTNISLPPILIIGPFGTGKTYTLAQAIKQTLLQDN--TRI 854

Query: 66  LCLTHTKAAA 75
           L  TH+ +AA
Sbjct: 855 LVCTHSNSAA 864


>gi|91078472|ref|XP_968116.1| PREDICTED: similar to helicase with zinc finger [Tribolium
           castaneum]
 gi|270003858|gb|EFA00306.1| hypothetical protein TcasGA2_TC003141 [Tribolium castaneum]
          Length = 1419

 Score = 42.9 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPT-----RSAWVSANAGSGKTHILVQRVLRLLLANA 60
           S Q  S     ++  + E ++A             V    G+GKT  L Q V  L+   +
Sbjct: 655 SRQWSSSLDSRLNLKQKEAVVAITTPIHVKIPPILVIGPFGTGKTFTLAQAVKELIKDES 714

Query: 61  HPSTLLCLTHTKAAA 75
           +   +L  TH+ +AA
Sbjct: 715 N--KILLCTHSNSAA 727


>gi|293610156|ref|ZP_06692457.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827388|gb|EFF85752.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 587

 Score = 42.9 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           + +DL++    +  L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 123 DYLDLLTDPHQQAALQMVARQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 181

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 182 TGKAAQRMQEALQNSFNDPKLLESGLVSEELRNQGTQTIHR 222


>gi|307353060|ref|YP_003894111.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
 gi|307156293|gb|ADN35673.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
          Length = 648

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 36/121 (29%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHR 81
           E+  A     +  + A  GSGKT +LV ++  L     +    +  L+HT AA  E+  +
Sbjct: 11  ERKEALKNLSTVDIQACPGSGKTTLLVAKLAILAKYWTNNKQGICILSHTNAARKEIEDK 70

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +                                     L   +L  P    + TIH F  
Sbjct: 71  LGNT---------------------------------DLGKKLLSHPH--FIGTIHGFFN 95

Query: 142 A 142
            
Sbjct: 96  Q 96


>gi|299771760|ref|YP_003733786.1| exonuclease V, alpha subunit [Acinetobacter sp. DR1]
 gi|298701848|gb|ADI92413.1| exonuclease V, alpha subunit [Acinetobacter sp. DR1]
          Length = 583

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           + +DL++    +  L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 119 DYLDLLTDPHQQAALQMVARQSLSIITGGPGTGKTYTLA-RIIAVLSQTIPNIRVAMAAP 177

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 178 TGKAAQRMQEALQNSFNDPKLLESGLVSEELRNQGTQTIHR 218


>gi|289627194|ref|ZP_06460148.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 813

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 78/220 (35%), Gaps = 36/220 (16%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   +++E++  W
Sbjct: 130 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFIGKLIEVMALW 187

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMS----KARHLLITILETPGGLKVQTIHAFCEAIMQ 145
            H++ +  + ++ +    +      S    +   +   +     GL              
Sbjct: 188 GHVTGQKQARDLVRTFHSRILPLVRSLPGFEQLRVFENLSSQSSGL-------------- 233

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLA--SIMLDNNEELKKAFYEILEISNDED 203
               EA+    F +   +  ++ +    +   A      +    L +   ++ E+  D  
Sbjct: 234 ---EEADSNP-FDLRINDAQRQQLNLCYRDLYAGNERFREVMAPLYRHALQLKELDRDHP 289

Query: 204 I---ETLISDIISNRT----ALKLIFFFFSYLWRRKIIEK 236
                  ++++ S R           +  +  W  K IE 
Sbjct: 290 DVQKRVAVTELSSKRDEEWCDTVEDLWIRAGAWPIKGIEP 329


>gi|229595681|ref|XP_001015020.2| hypothetical protein TTHERM_00673500 [Tetrahymena thermophila]
 gi|225565744|gb|EAR94775.2| hypothetical protein TTHERM_00673500 [Tetrahymena thermophila
           SB210]
          Length = 786

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 15  DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           DL   T  ++     P      V+A AGSGKT  ++Q V +  L+  +   +   T    
Sbjct: 8   DLDHFTDDQKKFILSPKNVDIKVNACAGSGKTECILQFVKQARLSGINYKQICITTFNIQ 67

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK 107
           A  ++  R +++      L+DEI      K+  K
Sbjct: 68  AINDIHKRAVDLFGE--ELADEIEIKNFDKLITK 99


>gi|149470402|ref|XP_001520980.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59,
           partial [Ornithorhynchus anatinus]
          Length = 538

 Score = 42.9 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 32/185 (17%)

Query: 36  VSANA--GSGKT-HILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           + A+A  GSGKT   L+  ++R L  N  PS  L LT T+    E++ ++ +        
Sbjct: 246 IVASADTGSGKTVAFLLPVIIRALEENKTPSA-LILTPTR----ELAIQIEKQAKELMSG 300

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA- 151
              + +  +    G  P    + + +  +  IL TPG +           I++Q  ++  
Sbjct: 301 LPNMRTVLLV---GGLPLPPQLYRLKKRVKVILATPGRI---------LEIIKQNAVDLQ 348

Query: 152 NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
            I     + DE  +   +  ++     L     D    L  A   +        IE L +
Sbjct: 349 GI--KIVVVDEADTMLKMGFQQQVLDILEKTPADRQAILVSATIPV-------GIEQLAN 399

Query: 210 DIISN 214
            ++ N
Sbjct: 400 QLLHN 404


>gi|254974875|ref|ZP_05271347.1| hypothetical protein CdifQC_06155 [Clostridium difficile QCD-66c26]
 gi|255092262|ref|ZP_05321740.1| hypothetical protein CdifC_06337 [Clostridium difficile CIP 107932]
 gi|255100351|ref|ZP_05329328.1| hypothetical protein CdifQCD-6_06047 [Clostridium difficile
           QCD-63q42]
 gi|255306289|ref|ZP_05350460.1| hypothetical protein CdifA_06832 [Clostridium difficile ATCC 43255]
 gi|255314002|ref|ZP_05355585.1| hypothetical protein CdifQCD-7_06615 [Clostridium difficile
           QCD-76w55]
 gi|255516682|ref|ZP_05384358.1| hypothetical protein CdifQCD-_06179 [Clostridium difficile
           QCD-97b34]
 gi|255649781|ref|ZP_05396683.1| hypothetical protein CdifQCD_06299 [Clostridium difficile
           QCD-37x79]
 gi|260682938|ref|YP_003214223.1| hypothetical protein CD196_1193 [Clostridium difficile CD196]
 gi|260686536|ref|YP_003217669.1| hypothetical protein CDR20291_1171 [Clostridium difficile R20291]
 gi|306519885|ref|ZP_07406232.1| hypothetical protein CdifQ_07337 [Clostridium difficile QCD-32g58]
 gi|260209101|emb|CBA62266.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260212552|emb|CBE03522.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 593

 Score = 42.9 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL-THTKAAAAEMSHRVLEIITAWS 90
            +  +   +G GKT I++ R ++L  A  +P   L + THTK    E+  R+  +    +
Sbjct: 207 GNTLIEGGSGIGKTAIMLSRAIKL--AKVYPHHKLVIFTHTKQLCNELRERIELLYKDNN 264

Query: 91  HLSDEILSAEITKIQGK 107
           +L     S+ I K+  K
Sbjct: 265 NLEVHTFSSFIFKLAKK 281


>gi|294668071|ref|ZP_06733188.1| exodeoxyribonuclease V gamma chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292601862|gb|EFF45692.1| exodeoxyribonuclease V gamma chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1080

 Score = 42.9 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 35   WVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             + A A +GKT IL     R+ +        +L  T T A   E+S  + E +     L 
Sbjct: 1008 LIEAIARTGKTFILATLFTRMRVERRLRIGQILAGTFTDAPTQELSRGIRERLVLAESLP 1067

Query: 94   DEI 96
             + 
Sbjct: 1068 PDA 1070


>gi|153955147|ref|YP_001395912.1| helicase [Clostridium kluyveri DSM 555]
 gi|146348005|gb|EDK34541.1| Predicted helicase [Clostridium kluyveri DSM 555]
          Length = 747

 Score = 42.9 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANA 60
           S    S+   +++  + EQ  ++ ++  ++  V   AGSGKT + + R+  LL       
Sbjct: 196 SKSTDSKMKTIVTTIQREQNKVIRNEEYKNLIVQGPAGSGKTSVALHRIAYLLYKQRDKI 255

Query: 61  HPSTLLC 67
            P  ++ 
Sbjct: 256 KPQNIVI 262


>gi|288553768|ref|YP_003425703.1| Type 1 restriction-modification system R (restriction) subunit
           [Bacillus pseudofirmus OF4]
 gi|288544928|gb|ADC48811.1| Type 1 restriction-modification system R (restriction) subunit
           [Bacillus pseudofirmus OF4]
          Length = 998

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 54/234 (23%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAA 76
            E +       +  +  +AGSGKT+    L  R+ +L   N     S+++ +T       
Sbjct: 295 EEDVKVRLVGHNYLIQHSAGSGKTNSISWLAHRLAKLHDENNESIFSSVIVIT------- 347

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
               R          + D+ L   + +++ K      ++K    L   +     + + T 
Sbjct: 348 ---DR---------RVLDKQLQDAVYQLEHKAGMVERINKDSAQLANAINNETRIIITT- 394

Query: 137 HAFCEAIMQQFPL----EANITSH--FAIADEE-------QSKKLIEEAKKSTLASIMLD 183
                  +Q+FP      A I       I DE         S  L       TL     +
Sbjct: 395 -------LQKFPFIMEKVAGIDRKKYAVIIDEAHSSQGGKASTALTNILSDKTLEDAYNE 447

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           +          I E + +   E +I  I+ +     + FF F+   + K +EK 
Sbjct: 448 D---------RIAEENLESLDEQIIETIMKSGKQDNVSFFAFTATPKPKTLEKF 492


>gi|219855583|ref|YP_002472705.1| hypothetical protein CKR_2240 [Clostridium kluyveri NBRC 12016]
 gi|219569307|dbj|BAH07291.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 763

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANA 60
           S    S+   +++  + EQ  ++ ++  ++  V   AGSGKT + + R+  LL       
Sbjct: 212 SKSTDSKMKTIVTTIQREQNKVIRNEEYKNLIVQGPAGSGKTSVALHRIAYLLYKQRDKI 271

Query: 61  HPSTLLC 67
            P  ++ 
Sbjct: 272 KPQNIVI 278


>gi|260550544|ref|ZP_05824754.1| exonuclease V alpha subunit [Acinetobacter sp. RUH2624]
 gi|260406459|gb|EEW99941.1| exonuclease V alpha subunit [Acinetobacter sp. RUH2624]
          Length = 583

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E +DL++    +  L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 119 EHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 177

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 178 TGKAAQRMQEALQNSFNDPKLLESGLISDELRNQSTQTIHR 218


>gi|253566963|ref|ZP_04844415.1| superfamily I DNA/RNA helicase [Bacteroides sp. 3_2_5]
 gi|251944526|gb|EES85015.1| superfamily I DNA/RNA helicase [Bacteroides sp. 3_2_5]
          Length = 597

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 23/139 (16%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR--VLEIITAWSH 91
             +    G+GKT+++ +   +L        ++L    T  A  E++ +  V  ++     
Sbjct: 205 MLLEGPPGTGKTYMIAELCAKLCAEG---KSVLVTALTNRALMEIAEKQAVETLLNEHKI 261

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
               I   EI +I           +    +  +   PG L + T   F   I+  F  E 
Sbjct: 262 FKTNISIDEIREI-----------RNLENIKCVAPMPGCLVLSTY--F---IISGFAAEL 305

Query: 152 NI--TSHFAIADEEQSKKL 168
           +I     + I DE     L
Sbjct: 306 SIEQPFDYVIMDEASQAIL 324


>gi|238019009|ref|ZP_04599435.1| hypothetical protein VEIDISOL_00871 [Veillonella dispar ATCC 17748]
 gi|237864493|gb|EEP65783.1| hypothetical protein VEIDISOL_00871 [Veillonella dispar ATCC 17748]
          Length = 585

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 3/124 (2%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLT 69
              +  S  + +            V+A AG GKT  +V ++ R L          +L ++
Sbjct: 6   RLKEFHSGDEEQLSFIFSDKPRLIVNAPAGCGKTTAMVSKIARELSLGNIESNKKVLAMS 65

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            +  A+  +   V E++ +    S ++L  ++            + K   LL        
Sbjct: 66  FSVNASIRIKSDVKELLPSLVDNS-KLLLKKLDIANYHNFAMRLLYKYGFLLNEEFINLS 124

Query: 130 GLKV 133
             ++
Sbjct: 125 EFRI 128


>gi|299744503|ref|XP_001831080.2| DNA helicase [Coprinopsis cinerea okayama7#130]
 gi|298406157|gb|EAU90702.2| DNA helicase [Coprinopsis cinerea okayama7#130]
          Length = 940

 Score = 42.6 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAA 75
           ++ ++   + +    R + V    G+GKT  +++  L+LL  +   P  +L  T+T  A 
Sbjct: 431 LNSSQIRAMASMIGNRLSLVQGPPGTGKTKTIIE-TLKLLKLHFRVPHRILVCTYTNVAV 489

Query: 76  AEMSH 80
             +  
Sbjct: 490 DNLVE 494


>gi|291529665|emb|CBK95251.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 673

 Score = 42.6 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 33/107 (30%)

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           S  L +T T AAAAEM  R+        +  D                            
Sbjct: 20  SKFLLITFTDAAAAEMRTRLAGAFLTEGYEID---------------------------- 51

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
                P  +   T ++F   ++++F  +        I D   +++ +
Sbjct: 52  -----PEKIPTMTFNSFAMDLVKEFYNDLGFLKTPIIVDTNPTREAM 93


>gi|315081166|gb|EFT53142.1| conserved domain protein [Propionibacterium acnes HL078PA1]
          Length = 542

 Score = 42.6 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|116750284|ref|YP_846971.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB]
 gi|116699348|gb|ABK18536.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB]
          Length = 690

 Score = 42.6 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
             QL+    +  A VS +AG+GKT + + R + L  A  HP   +L  T ++  A  +  
Sbjct: 236 QRQLVERQFSGPARVSGSAGTGKTIVALHRAVHL--ARIHPDARVLLTTFSETLANALRT 293

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK----ARHLLITILETPGGL 131
           ++  +I+    + + +    +  I G++  + +  +    +R  +   L+   G 
Sbjct: 294 KLRRLISNEPRIGERLEVHAMGAI-GRRLYELNFGRPRIASREAIRQALDEAAGA 347


>gi|71278677|ref|YP_268968.1| ATP-dependent helicase HrpA [Colwellia psychrerythraea 34H]
 gi|71144417|gb|AAZ24890.1| ATP-dependent helicase HrpA [Colwellia psychrerythraea 34H]
          Length = 1375

 Score = 42.6 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHPSTLLCLTH 70
           IS+  ++   A D  +   ++   GSGKT  + +  L L      L+ +  P  +   T 
Sbjct: 101 ISENAAQISAAIDANQVVIIAGETGSGKTTQIPKICLELGRGVDGLIGHTQPRRIAARTV 160

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
               A E+  ++ E +      +D++      K+       ++M + R LL 
Sbjct: 161 ANRIAEELGTKLGEQVGYKVRFNDQVSEQSYIKLMTDGILLAEMQRDRLLLK 212


>gi|167647767|ref|YP_001685430.1| DNA helicase II [Caulobacter sp. K31]
 gi|167350197|gb|ABZ72932.1| DNA helicase II [Caulobacter sp. K31]
          Length = 588

 Score = 42.6 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 48/127 (37%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP----STLLCLTHTKAAAAEMSH 80
              D   S  + A AG+GKT+ L + + RL+             + C+T+T  A  E+  
Sbjct: 22  ACLDEGGSFRLEAGAGAGKTYSLDKALRRLIDRRGTDLLRQRQQVGCITYTNVAKDEIIS 81

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           RV                                           E    ++ +T+H FC
Sbjct: 82  RV-------------------------------------------EAHPAVRPETVHGFC 98

Query: 141 EAIMQQF 147
            +I+Q F
Sbjct: 99  WSILQDF 105


>gi|330960996|gb|EGH61256.1| UvrD/REP helicase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 775

 Score = 42.6 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   ++++++  W
Sbjct: 83  STYVIAGAGAGKSTSLVLRI--LLLHHYLGYELNAMTVVTFTRESRKDFIGKLIDVMALW 140

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            H  ++  + ++ +    +      S      +   E  G
Sbjct: 141 GHAPEQKQARDLVRTFHSRILPLVRSLPGFEQLRAFENLG 180


>gi|222480752|ref|YP_002566989.1| ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein
           (contains helicase and exonuclease domains) [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222453654|gb|ACM57919.1| ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein
           (contains helicase and exonuclease domains) [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 1227

 Score = 42.6 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 70/181 (38%), Gaps = 26/181 (14%)

Query: 40  AGSGKT----HILVQRVLRLLLANAH-PST-LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            G+GK+    H+  + +LR   A    P   +  ++  +  AA++   + + + A     
Sbjct: 49  PGAGKSVVAHHVAAEDILRRYAAGDPTPEQHVTVVSFNRDEAADIVPAICDRLQAIVEHD 108

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
               +A+I+            ++ R+L   + + P      TI      I ++F  +   
Sbjct: 109 LVPTAADISG-----------AELRYLRQRVRQAPYA---GTIDGLLREIFREFARDIGF 154

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
               ++ ++     L++   +    S+   N+ E  +   ++     D + +  + ++++
Sbjct: 155 DEMPSVGNDA----LLKRVHRDCYESL--RNDPEHARRLRDLEAAYPDGEYDEGVDEMLA 208

Query: 214 N 214
           +
Sbjct: 209 D 209


>gi|331019824|gb|EGH99880.1| hypothetical protein PLA106_27661 [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 380

 Score = 42.6 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 38 ANAGSGKTH-ILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
          A AGSGKTH ++++ +  +         +L +T+T +   E+  R LE+    S
Sbjct: 2  AGAGSGKTHKVIIESIAEIQRGG----KVLVVTYTTSNQQELKRRFLEVFGTHS 51


>gi|330944656|gb|EGH46599.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 340

 Score = 42.6 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +   ++++++  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFISKLIDVMALW 204

Query: 90  SHLSDEILSAEITK 103
            H+ ++  + E+ +
Sbjct: 205 GHVLEQKQARELVR 218


>gi|167945915|ref|ZP_02532989.1| hypothetical protein Epers_04967 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 39

 Score = 42.6 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAI 159
           +V TIH FC  ++Q++  E+ +   F +
Sbjct: 10  QVFTIHGFCGRVLQEYAFESGMP--FEV 35


>gi|167560982|ref|ZP_02353898.1| putative DNA helicase [Burkholderia oklahomensis EO147]
          Length = 692

 Score = 42.6 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             QL+  +   +A VS +AG+GKT + + R + L   +     LLC T +   A  +   
Sbjct: 237 QRQLVNRNYNGAARVSGSAGTGKTVVALHRAVHLARKDEDARVLLC-TFSDTLANALRGN 295

Query: 82  VLEIITAWSHLSD-------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +I     L +       E +   +  ++  KP  +   +   LL        GLK
Sbjct: 296 LYRLIWNTPKLGERIDVAAMEAIGIRLYSVEFGKPALAGRDEISTLLRAAAAQVDGLK 353


>gi|74178225|dbj|BAE29898.1| unnamed protein product [Mus musculus]
          Length = 511

 Score = 42.6 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 41 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 87


>gi|290956621|ref|YP_003487803.1| helicase [Streptomyces scabiei 87.22]
 gi|260646147|emb|CBG69240.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 764

 Score = 42.6 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 5   NSFQEHSETIDLISQT-----KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           ++ Q   E  D  +         E+++    T  A VS   G+GKT + + RV  L    
Sbjct: 241 DAVQAVIEEGDFRAWKVFLHPTQERIVHRHYTGPARVSGGPGTGKTIVALHRVKHL-AEQ 299

Query: 60  AHPST---LLCLTHTKAAAAEMSHRVLEIIT 87
             P     +L  T TK    ++  R+  ++ 
Sbjct: 300 LPPGHNRPILLTTFTKNLTTDLRLRLASLVE 330


>gi|74212626|dbj|BAE31051.1| unnamed protein product [Mus musculus]
 gi|74219614|dbj|BAE29576.1| unnamed protein product [Mus musculus]
          Length = 511

 Score = 42.6 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
               +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 41 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 87


>gi|170782261|ref|YP_001710594.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156830|emb|CAQ01997.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 1089

 Score = 42.6 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 17  ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAA 74
           +    S++ +   P   SA V    GSG+T  L + V  R+L     P+ +L L  ++AA
Sbjct: 21  VELDPSQRAVVELPVGVSAAVIGAPGSGRTTTLRELVAERILAQGLDPAEVLVLAPSRAA 80

Query: 75  AA----EMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           A     E++ RV       +    + ++ E+L+    +   + P     ++   ++  +L
Sbjct: 81  ATRLRDELALRVGVPTLGPLARTATSVAFEVLARRAAETGTEPPRLLTGAEQDQIIADLL 140

Query: 126 ETPGGL 131
                L
Sbjct: 141 AGHEEL 146


>gi|159045754|ref|YP_001534548.1| CRISPR-associated protein Cas3 [Dinoroseobacter shibae DFL 12]
 gi|157913514|gb|ABV94947.1| cas3: CRISPR-associated helicase Cas3 [Dinoroseobacter shibae DFL
           12]
          Length = 857

 Score = 42.6 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 19/129 (14%)

Query: 23  EQLLASDP--TRSAWVSANAGSGKT-HILVQRVLRLLLANAHPSTLLCLTH---TKAAAA 76
           +Q +A  P   R   + A  GSGKT   L     RL         +  L     T+AAA 
Sbjct: 279 QQTIADIPLEARLVIIEAETGSGKTEAALAH-FARLRSEG----RVDALYFAVPTRAAAG 333

Query: 77  EMSHRVLEIITAW----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE----TP 128
           ++  R+ E +       + L+   +         K P    +     +            
Sbjct: 334 QLHRRIQEAMARIGGPEAVLAVPGMLRAGLAEGRKLPGFRVLWDDDRVHWAAEHPTRFLA 393

Query: 129 GGLKVQTIH 137
             + V TI 
Sbjct: 394 APVAVGTID 402


>gi|256825725|ref|YP_003149685.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689118|gb|ACV06920.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM
          20547]
          Length = 1083

 Score = 42.6 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           V    G+GK+  +V+ V+  L A    S +L LT T+  A  +  R+ E 
Sbjct: 21 VVLGAPGTGKSTRVVEEVVAHLEAGGDLSQVLVLTPTRLTATMLRERLEER 71


>gi|168186664|ref|ZP_02621299.1| superfamily I DNA helicase [Clostridium botulinum C str. Eklund]
 gi|169295270|gb|EDS77403.1| superfamily I DNA helicase [Clostridium botulinum C str. Eklund]
          Length = 759

 Score = 42.6 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTL 65
           ++  D+++  + EQ  ++ ++  +   V  +AGSGKT + + R+  LL           +
Sbjct: 197 NKLKDVVATIQKEQNDIIRANLRKPIIVQGSAGSGKTTVAMHRLAYLLYRYKNKIKGEDI 256

Query: 66  LCL 68
           + +
Sbjct: 257 IVI 259


>gi|303230777|ref|ZP_07317524.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302514537|gb|EFL56532.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 375

 Score = 42.6 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT---KAAAAE 77
           + A AGSGKT  L    +  L        +L +T+T   K A  E
Sbjct: 5  LIIAAAGSGKTWGLCNHAINNLKE----KNILLITYTHQGKKALEE 46


>gi|170030088|ref|XP_001842922.1| potentail helicase MOV-10 [Culex quinquefasciatus]
 gi|167865928|gb|EDS29311.1| potentail helicase MOV-10 [Culex quinquefasciatus]
          Length = 760

 Score = 42.6 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 39  NAGSGKTHILVQRV--LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
             G+GKT  LV+ +  +  LL  A    +L +  + +AA E++ R+LEII  
Sbjct: 294 PPGTGKTSTLVEAIGQIYKLLPTA---NVLAVATSNSAANELTSRLLEIIPE 342


>gi|77920504|ref|YP_358319.1| hypothetical protein Pcar_2914 [Pelobacter carbinolicus DSM 2380]
 gi|77546587|gb|ABA90149.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 658

 Score = 42.6 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 55/216 (25%)

Query: 12  ETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLL 66
             +D++S    EQ  L+        +++  AG GKT + + R+  LL        P   L
Sbjct: 201 RMVDIVSLISREQFGLITKQHGGCLYLTGGAGCGKTTVALHRLSFLLFNQPELFRPQRCL 260

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            +         M +R          L D I       +  + P                 
Sbjct: 261 VV---------MFNR---------SLCDYIRQTSTDLLTNRLP----------------- 285

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNN 185
                 V T H++    ++ F     + + F+    +    L ++A     L   +    
Sbjct: 286 ------VDTFHSWSAKALRSF----GVAAKFSACQGQGLGSLKKQAGMYHALVEYVRVTK 335

Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLI 221
            +    F ++    N  D   L++  +S+R  ++ +
Sbjct: 336 AQ-DDPFADLEAFYNRTD---LLARHLSDRRQIERL 367


>gi|302771055|ref|XP_002968946.1| hypothetical protein SELMODRAFT_90782 [Selaginella moellendorffii]
 gi|300163451|gb|EFJ30062.1| hypothetical protein SELMODRAFT_90782 [Selaginella moellendorffii]
          Length = 827

 Score = 42.6 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 11  SETIDLISQTKSEQLLA---SDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLL 66
           + T+   S  KS++       D +R   V     G+GKT+++ + +++ +        +L
Sbjct: 351 ASTLSGASFDKSQRRAIQLGLDKSRPVAVIQGPPGTGKTNVVTEIIIQAVARG---DKVL 407

Query: 67  CLTHTKAAAAEMSHRVLEI 85
               T AA   +  R+ + 
Sbjct: 408 ATAPTNAAVDNLVDRLSDT 426


>gi|258514695|ref|YP_003190917.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778400|gb|ACV62294.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 706

 Score = 42.6 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIIT 87
                V   AG+GKT   + R  R L  N        +L  T T+  AA++  ++  I +
Sbjct: 257 NGPVRVLGGAGTGKTVAAIHR-ARYLAENVYTGSKDRILFTTFTRNLAADIKDQLRRICS 315

Query: 88  AWSHLSDEILSAE 100
             +    E+++ +
Sbjct: 316 PGTMARIEVVNLD 328


>gi|157119242|ref|XP_001653318.1| zinc finger protein [Aedes aegypti]
 gi|108875416|gb|EAT39641.1| zinc finger protein [Aedes aegypti]
          Length = 2079

 Score = 42.6 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRS-----AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E ++A     +       +    G+GKT+ L Q + +LLL     S +L  TH+
Sbjct: 882 LNSKQKEAVVAITTPINVALPPILLIGPFGTGKTYTLAQAIKQLLLQPE--SKILICTHS 939

Query: 72  KAAA 75
            +AA
Sbjct: 940 NSAA 943


>gi|313839999|gb|EFS77713.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1]
          Length = 748

 Score = 42.6 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|328755292|gb|EGF68908.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|314968415|gb|EFT12513.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|171059639|ref|YP_001791988.1| NERD domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170777084|gb|ACB35223.1| NERD domain protein [Leptothrix cholodnii SP-6]
          Length = 625

 Score = 42.6 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 45/195 (23%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             + E L  S       V   AGSGKT +LV R ++L  A      +L L + +     +
Sbjct: 240 DLQQETLARSLGDGHRVVHGVAGSGKTMLLVYRAMQLAAAAKPERPILVLCYNRP----L 295

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           S R+  ++                                            ++V+T H+
Sbjct: 296 SARIDALLRQRGVDE------------------------------------RVQVRTFHS 319

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIE-----EAKKSTLASIMLDNNEELKKAFY 193
           +CE +++ + L   +        +     +I+        ++   ++M+D   + + A+ 
Sbjct: 320 WCEEMVRAYQLAVPVHRQDRNYCDAMVDTVIQAIDHGRVPRAQYCALMIDEAHDFEDAWL 379

Query: 194 EILEISNDEDIETLI 208
            +     D D  +L+
Sbjct: 380 RLAPQLIDPDTRSLL 394


>gi|327329642|gb|EGE71398.1| UvrD/Rep helicase [Propionibacterium acnes HL096PA3]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|313816679|gb|EFS54393.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|313763497|gb|EFS34861.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|331660979|ref|ZP_08361911.1| DNA helicase II [Escherichia coli TA206]
 gi|323189804|gb|EFZ75082.1| hypothetical protein ECRN5871_1589 [Escherichia coli RN587/1]
 gi|331052021|gb|EGI24060.1| DNA helicase II [Escherichia coli TA206]
          Length = 616

 Score = 42.6 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 82/246 (33%), Gaps = 53/246 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           + F   + TI  I  T+ EQL  S       +   AGSGKT IL  R   L   N     
Sbjct: 222 DEFSVDAPTIISILDTQQEQLARSMRDGHRIIHGVAGSGKTLILYHRCQELAKKNDSEKP 281

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L + +                                          +++ A+ L    
Sbjct: 282 ILVICY------------------------------------------NITLAKKLRSMF 299

Query: 125 LETP--GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL----IEEAKKSTLA 178
           +  P    +KV+  HA+C   +++   +  I     I +  +          + K    +
Sbjct: 300 INHPFAEKIKVKNFHAWCFQQIKEN--KITIPEGDNIFENMELALTDGFKTGKIKPEQYS 357

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++++D   + K  + +IL    D   E L+    D  S     K + F  S +  +    
Sbjct: 358 AVLIDEGHDFKPEWLKILAKMTDSQDENLLFLYDDAQSIYQKKKALDFTLSSVDIKATGR 417

Query: 236 KSLWSI 241
            ++ +I
Sbjct: 418 TTILNI 423


>gi|167951327|ref|ZP_02538401.1| 6-phosphogluconate dehydrogenase, NAD-binding protein [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 231

 Score = 42.6 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 8/47 (17%)

Query: 36  VSANA--GSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
           V A A  GS  T      +  L+         +  +T T  AA EM 
Sbjct: 153 VPAAARPGSSPTK-----ITYLVEKCGIDARHITAVTFTNKAAREMK 194


>gi|148906976|gb|ABR16632.1| unknown [Picea sitchensis]
          Length = 691

 Score = 42.6 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 12  ETIDLISQTKSEQL-LASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +  D    ++   + L  +  R   V     G+GKT +L + +    +A+     +L   
Sbjct: 212 QLKDFFGDSQKRAISLGLNRQRPVLVIQGPPGTGKTSVLTELIC---IASRKGERMLVTA 268

Query: 70  HTKAAAAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            + AA   M  R+ +       +     +S  + S  +  I   +        AR 
Sbjct: 269 PSNAAVDNMVERLADMGLNIVRVGNPVRMSPAVASKSLGSIVENRLASFRRELARK 324


>gi|170030072|ref|XP_001842914.1| potentail helicase MOV-10 [Culex quinquefasciatus]
 gi|167865920|gb|EDS29303.1| potentail helicase MOV-10 [Culex quinquefasciatus]
          Length = 989

 Score = 42.6 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
             G+GKT  LV+ ++++   +     +L    + AA  E++ R+L  +   S       S
Sbjct: 555 PPGTGKTTTLVEAIVQICTRHPS-EHILVTAQSNAACDELAVRLLHYLAPKSIYRFYSRS 613

Query: 99  AEITKIQGKKPNKSDMSKARHLL 121
            E    +  +P K   + A  + 
Sbjct: 614 IEKRLEELPEPLKQISNLADGVF 636


>gi|126698929|ref|YP_001087826.1| hypothetical protein CD1330 [Clostridium difficile 630]
 gi|115250366|emb|CAJ68188.1| putative DNA helicase, UvrD/REP type [Clostridium difficile]
          Length = 593

 Score = 42.6 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL-THTKAAAAEMSHRVLEIITAWS 90
            +  +   +G GKT I++ R ++L  A  +P   L + THTK    E+  R+  +    +
Sbjct: 207 GNTLIEGGSGIGKTAIMLSRAIKL--ARVYPHHKLVIFTHTKQLCNELRERIELLYKDNN 264

Query: 91  HLSDEILSAEITKIQGK 107
           +L     S+ I K+  K
Sbjct: 265 NLEVHTFSSFIFKLAKK 281


>gi|319791345|ref|YP_004152985.1| hypothetical protein Varpa_0654 [Variovorax paradoxus EPS]
 gi|315593808|gb|ADU34874.1| hypothetical protein Varpa_0654 [Variovorax paradoxus EPS]
          Length = 353

 Score = 42.6 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           V A AGSGKT        RL+        +L +T+T +   E+  RVL    
Sbjct: 5  VVFAVAGSGKTT-------RLINELDLAKRVLLITYTDSNCEEIRRRVLAKFG 50


>gi|313801278|gb|EFS42529.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2]
 gi|313829492|gb|EFS67206.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2]
 gi|314919388|gb|EFS83219.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1]
 gi|314920704|gb|EFS84535.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3]
 gi|314930583|gb|EFS94414.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1]
 gi|314954461|gb|EFS98867.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1]
 gi|314957548|gb|EFT01651.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1]
 gi|314963758|gb|EFT07858.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1]
 gi|315079606|gb|EFT51599.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2]
 gi|315099125|gb|EFT71101.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2]
 gi|315100392|gb|EFT72368.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1]
 gi|315109104|gb|EFT81080.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2]
 gi|327452086|gb|EGE98740.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1]
 gi|327454876|gb|EGF01531.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3]
 gi|327457840|gb|EGF04495.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2]
 gi|328758227|gb|EGF71843.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|313793887|gb|EFS41911.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|50843084|ref|YP_056311.1| UvrD/Rep helicase [Propionibacterium acnes KPA171202]
 gi|289426503|ref|ZP_06428246.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|289428780|ref|ZP_06430463.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|50840686|gb|AAT83353.1| UvrD/Rep helicase [Propionibacterium acnes KPA171202]
 gi|289153231|gb|EFD01949.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|289158178|gb|EFD06398.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|313808042|gb|EFS46523.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2]
 gi|313813490|gb|EFS51204.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1]
 gi|313819610|gb|EFS57324.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2]
 gi|313822065|gb|EFS59779.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1]
 gi|313823700|gb|EFS61414.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2]
 gi|313826023|gb|EFS63737.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1]
 gi|314924762|gb|EFS88593.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3]
 gi|314961951|gb|EFT06052.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2]
 gi|314978941|gb|EFT23035.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2]
 gi|315083626|gb|EFT55602.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2]
 gi|315087048|gb|EFT59024.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3]
 gi|315089223|gb|EFT61199.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1]
 gi|315106915|gb|EFT78891.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
 gi|327446327|gb|EGE92981.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|315298308|gb|EFU57563.1| conserved hypothetical protein [Escherichia coli MS 16-3]
          Length = 616

 Score = 42.6 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 82/246 (33%), Gaps = 53/246 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           + F   + TI  I  T+ EQL  S       +   AGSGKT IL  R   L   N     
Sbjct: 222 DEFSVDAPTIISILDTQQEQLARSMRDGHRIIHGVAGSGKTLILYHRCQELAKKNDSEKP 281

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L + +                                          +++ A+ L    
Sbjct: 282 ILVICY------------------------------------------NITLAKKLRSMF 299

Query: 125 LETP--GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL----IEEAKKSTLA 178
           +  P    +KV+  HA+C   +++   +  I     I +  +          + K    +
Sbjct: 300 INHPFAEKIKVKNFHAWCFQQIKEN--KITIPEGDNIFENMELALTDGFKTGKIKPEQYS 357

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++++D   + K  + +IL    D   E L+    D  S     K + F  S +  +    
Sbjct: 358 AVLIDEGHDFKPEWLKILAKMTDSQDENLLFLYDDAQSIYQKKKALDFTLSSVDIKATGR 417

Query: 236 KSLWSI 241
            ++ +I
Sbjct: 418 TTILNI 423


>gi|314986617|gb|EFT30709.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|304404847|ref|ZP_07386508.1| UvrD/Rep helicase family protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304346654|gb|EFM12487.1| UvrD/Rep helicase family protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 694

 Score = 42.6 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++Y     + ++  D++S  + EQ  ++ +D  R+ ++   AGSGKT + + R+  LL
Sbjct: 163 LLYRLGESKDNKLRDIVSTIQEEQDNIIRADRNRALFIQGVAGSGKTTVALHRLAYLL 220


>gi|314914795|gb|EFS78626.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
          Length = 667

 Score = 42.6 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|228932339|ref|ZP_04095221.1| hypothetical protein bthur0009_8160 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827275|gb|EEM73027.1| hypothetical protein bthur0009_8160 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 581

 Score = 42.6 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 17  ISQTKSEQL-----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           I +   +Q+     + S+P +S  ++ +AG+GKT +L   V +LL    +   +  +
Sbjct: 177 IKELTDQQIEFLKEIESNPDKSFVINGDAGTGKTVLLTHLVAKLLKEKPN-HRIAVV 232


>gi|50083655|ref|YP_045165.1| exonuclease V, alpha subunit [Acinetobacter sp. ADP1]
 gi|49529631|emb|CAG67343.1| exonuclease V, alpha subunit [Acinetobacter sp. ADP1]
          Length = 592

 Score = 42.6 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 14  IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +DL++    +  ++   T++   ++   G+GKT+ L  R++ +L        +     T 
Sbjct: 122 LDLLTDPHQQAAMSMVATQAFSLITGGPGTGKTYTLA-RIIAVLNQAIPNIRIAMAAPTG 180

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
            AA  M   +          +  +LS E+ +   +  ++
Sbjct: 181 KAAQRMQEALQASFNDEKLTASGLLSHELKQQTTQTLHR 219


>gi|328752469|gb|EGF66085.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|314990973|gb|EFT35064.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3]
          Length = 751

 Score = 42.6 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|171058461|ref|YP_001790810.1| exodeoxyribonuclease V subunit alpha [Leptothrix cholodnii SP-6]
 gi|170775906|gb|ACB34045.1| exodeoxyribonuclease V, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 739

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAA 76
           +      +   R A ++   G+GKT+  V R+L L++A  HP      +     T  AAA
Sbjct: 247 QRSACAIALRGRLALITGGPGTGKTYT-VARLLALVMA-VHPQPQALRIALAAPTGKAAA 304

Query: 77  EMSHRVLEIITAWSHLSDEIL-----------SAEITKIQGKKPNKSDMSK-ARHLLITI 124
            +   +   +   +      L           S  + K+ G +P+     + ARH L   
Sbjct: 305 RLKQSIDSALQQLAAALPGALDWGLLQQRLSQSLTLHKLLGARPDTRRFGRDARHPLEVD 364

Query: 125 LETPGGLK 132
           L       
Sbjct: 365 LLVVDEAS 372


>gi|148272376|ref|YP_001221937.1| putative ATP-dependent DNA helicase/nuclease [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830306|emb|CAN01240.1| putative ATP-dependant DNA helicase/nuclease [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 1089

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 11/129 (8%)

Query: 14  IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHT 71
           I  +    S++ +   P   SA V    GSG+T  L + V  R+L     P+ +L L  +
Sbjct: 18  IPEMELDPSQRAVVELPVGVSAAVIGAPGSGRTTTLRELVAERILAQGLDPAEVLVLAPS 77

Query: 72  KAAAA----EMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           +AAA     E++ RV       +    + ++ E+L+    +   + P     ++   ++ 
Sbjct: 78  RAAATRLRDELALRVGVPTLGPLARTATSVAFEVLARRAAETGTEPPRLLTGAEQDQIIA 137

Query: 123 TILETPGGL 131
            +L     L
Sbjct: 138 DLLAGHEEL 146


>gi|324991454|gb|EGC23387.1| type I site-specific deoxyribonuclease [Streptococcus sanguinis
           SK353]
          Length = 985

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 31/197 (15%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77
           E +  +   R+  +  +AGSGKT+    L   ++ L          T+L +T        
Sbjct: 279 EDMRVNHTDRNYLIQHSAGSGKTNTIAWLAHSLVSLHDEENQNIVDTVLVVT-------- 330

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              R++        +        + K+   K   SD++ A      I+ T       TIH
Sbjct: 331 --DRIVVDRQLQDAIRSIEHQPGVIKVMDDKATSSDLADALAGNTKIVAT-------TIH 381

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
            F + I +   + A +T+      E++   LI+EA  ST  S M   ++ L +   +I  
Sbjct: 382 KFAQ-INKSNWMSAGVTA------EKKFAILIDEAHSSTTGSYMSAVSQVLTET--DIEN 432

Query: 198 ISNDEDIETLISDIISN 214
            + DE  E  I D I  
Sbjct: 433 GTMDEPQEVSIGDAIEQ 449


>gi|170683581|ref|YP_001746801.1| hypothetical protein EcSMS35_4891 [Escherichia coli SMS-3-5]
 gi|170521299|gb|ACB19477.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
          Length = 616

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 82/246 (33%), Gaps = 53/246 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           + F   + TI  I  T+ EQL  S       +   AGSGKT IL  R   L   N     
Sbjct: 222 DEFSVDAPTIISILDTQQEQLARSMRDGHRIIHGVAGSGKTLILYHRCQELAKKNDSEKP 281

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L + +                                          +++ A+ L    
Sbjct: 282 ILVICY------------------------------------------NITLAKKLRSMF 299

Query: 125 LETP--GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL----IEEAKKSTLA 178
           +  P    +KV+  HA+C   +++   +  I     I +  +          + K    +
Sbjct: 300 INHPFAEKIKVKNFHAWCFQQIKEN--KITIPEGDNIFENMELALTDGFKTGKIKPEQYS 357

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++++D   + K  + +IL    D   E L+    D  S     K + F  S +  +    
Sbjct: 358 AVLIDEGHDFKPEWLKILAKMTDSQDENLLFLYDDAQSIYQKKKALDFTLSSVDIKATGR 417

Query: 236 KSLWSI 241
            ++ +I
Sbjct: 418 TTILNI 423


>gi|257063320|ref|YP_003142992.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
 gi|256790973|gb|ACV21643.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
          Length = 698

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLT 69
           Q +  Q++  D   +  V   AGSGKT +L+QR+  L      N +P  +  +T
Sbjct: 210 QKEQNQVIRHDDVPALLVGGIAGSGKTSVLLQRIAYLFYQERENLNPDDVFLIT 263


>gi|169627161|ref|YP_001700810.1| ATP-dependent helicase HrpA [Mycobacterium abscessus ATCC 19977]
 gi|169239128|emb|CAM60156.1| ATP-dependent helicase HrpA [Mycobacterium abscessus]
          Length = 1301

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANA-GSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL      E+L  +       V A A GSGKT  L      + R +R  + +  P  L  
Sbjct: 67  DLPVSAHREELAHAISAHQVVVVAGATGSGKTTQLPKICLELGRGIRGTIGHTQPRRLAA 126

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E+  ++ E +      +D+     + K+       +++ + R LL 
Sbjct: 127 RTVAERIAEELGTQLGETVGYTVRFTDQASDRTLVKLMTDGILLAEIQRDRRLLR 181


>gi|295131132|ref|YP_003581795.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|291375557|gb|ADD99411.1| UvrD/REP helicase [Propionibacterium acnes SK137]
          Length = 751

 Score = 42.2 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
                +   AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 281 NGPFCLGGGAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 327


>gi|222623514|gb|EEE57646.1| hypothetical protein OsJ_08074 [Oryza sativa Japonica Group]
          Length = 980

 Score = 42.2 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE------IIT 87
             +    G+GKT +L + ++R +        +L    + AA   M  R+         + 
Sbjct: 523 LIIQGPPGTGKTVLLTELIVRAVQQG---ENVLVTAPSNAAVDNMVERLSNTGLNIVRVG 579

Query: 88  AWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITIL 125
             + +S  + S  + +I   +    + ++ + R  L   L
Sbjct: 580 NPARISPSVASKSLAEIVNGRLEQFRKELERKRSDLRKDL 619


>gi|327539896|gb|EGF26498.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica WH47]
          Length = 735

 Score = 42.2 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 13/135 (9%)

Query: 6   SFQEHSETIDLISQTKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           SFQ   + ID  ++    Q  A          A +    G+GKT  + + + + +     
Sbjct: 269 SFQFELKDIDFRTELNPPQRDAVAFAMMADDVAIIHGPPGTGKTTTIAEIIAQSVERG-- 326

Query: 62  PSTLLCLTHTKAAAAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
              +L    +  A   +  R++        +   + + + +    +  +    P  + + 
Sbjct: 327 -ERVLACAASNTAVDNLLERLVRLMPNVIRVGHPARVFESLQEHTLDALVESDPTSTVIK 385

Query: 116 KARHLLITILETPGG 130
             R  L  IL     
Sbjct: 386 DLRRELDQILREANR 400


>gi|324324971|gb|ADY20231.1| hypothetical protein YBT020_04925 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 581

 Score = 42.2 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 17  ISQTKSEQL-----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           I +   +Q+     + S+P +S  ++ +AG+GKT +L   V +LL    +   +  +
Sbjct: 177 IKELTDQQIEFLKEIESNPDKSFVINGDAGTGKTVLLTHLVAKLLKEKPN-HRIAVV 232


>gi|330467200|ref|YP_004404943.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328810171|gb|AEB44343.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 699

 Score = 42.2 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            +  T+ +       +  A V+ +AG+GKT   + R + L         +L  T T+A A
Sbjct: 235 FLHPTQRDVAYRDTYSGPALVTGSAGTGKTVTGLHRAVFLAERLPDGEKVLLTTFTRALA 294


>gi|313903209|ref|ZP_07836602.1| protein of unknown function DUF559 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466520|gb|EFR62041.1| protein of unknown function DUF559 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 1502

 Score = 42.2 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 19  QTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
             + +  +AS  D      V    G+GKTH +   +  LL       ++L   HT  A  
Sbjct: 372 WNQEQVQIASRLDRYGCVVVQGPPGTGKTHTIANLIGHLLAQG---KSVLVTAHTSKALN 428

Query: 77  EMSHRVLEIITAW 89
            + + + E + + 
Sbjct: 429 VVRNHIPEALRSL 441


>gi|225874787|ref|YP_002756246.1| helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196]
 gi|225792206|gb|ACO32296.1| helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196]
          Length = 566

 Score = 42.2 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 37/130 (28%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            ++           V    GSGKT + + +  +          +L L+ ++AA       
Sbjct: 3   DQRKAIIAEPGHLLVLGGPGSGKTTVALFKAKQRFSTLKPSQEILFLSFSRAA------- 55

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           + +++     +        +                               VQT H+FC 
Sbjct: 56  IRQVLLRCKEILKPAERRAVA------------------------------VQTYHSFCM 85

Query: 142 AIMQQFPLEA 151
            +++      
Sbjct: 86  DMLRAHGRLL 95


>gi|215489662|ref|YP_002332093.1| predicted helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|215267734|emb|CAS12195.1| predicted helicase [Escherichia coli O127:H6 str. E2348/69]
          Length = 616

 Score = 42.2 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 82/246 (33%), Gaps = 53/246 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           + F   + TI  I  T+ EQL  S       +   AGSGKT IL  R   L   N     
Sbjct: 222 DEFSVDAPTIISILDTQQEQLARSMRDGHRIIHGVAGSGKTLILYHRCQELAKKNDSEKP 281

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L + +                                          +++ A+ L    
Sbjct: 282 ILVICY------------------------------------------NITLAKKLRSMF 299

Query: 125 LETP--GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL----IEEAKKSTLA 178
           +  P    +KV+  HA+C   +++   +  I     I +  +          + K    +
Sbjct: 300 INHPFAEKIKVKNFHAWCFQQIKEN--KITIPEGDNIFENMELALTDGFKTGKIKPEQYS 357

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++++D   + K  + +IL    D   E L+    D  S     K + F  S +  +    
Sbjct: 358 AVLIDEGHDFKPEWLKILAKMTDSQDENLLFLYDDAQSIYQKKKALDFTLSSVDIKATGR 417

Query: 236 KSLWSI 241
            ++ +I
Sbjct: 418 TTILNI 423


>gi|328853328|gb|EGG02467.1| hypothetical protein MELLADRAFT_38533 [Melampsora larici-populina
           98AG31]
          Length = 701

 Score = 42.2 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 8   QEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           Q   E    ++ ++   +  A  P     V    G+GKTH LV  +  L         +L
Sbjct: 210 QATPENALGLNDSQQRAVRHALSPAPITLVFGPPGTGKTHTLVSIISALHARG---DRIL 266

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
                 AAA+ +         A  ++++ +L+ ++   +   P +   S ++  L     
Sbjct: 267 I-----AAASNL---------AIDNIAERLLAKQLPLTRLGHPARVLDSLSQSTLDHQCN 312

Query: 127 TPGGLKV 133
           T  G ++
Sbjct: 313 TFDGSEI 319


>gi|198433360|ref|XP_002125539.1| PREDICTED: similar to DNA2 DNA replication helicase 2-like (yeast)
           [Ciona intestinalis]
          Length = 1322

 Score = 42.2 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +S  E ++ +  +++T+ + +     ++    V    GSGKT  +V  +  LLL      
Sbjct: 891 SSKNEIAQMLRGLNKTQRQAIKRVLISKDYTLVVGMPGSGKTTTIVAMIRILLLCGL--- 947

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            +L  ++T +A   +  ++++  T +  L 
Sbjct: 948 RVLVTSYTHSAVDNLLLKLIKYKTRFLRLG 977


>gi|156977415|ref|YP_001448321.1| hypothetical protein VIBHAR_06202 [Vibrio harveyi ATCC BAA-1116]
 gi|156529009|gb|ABU74094.1| hypothetical protein VIBHAR_06202 [Vibrio harveyi ATCC BAA-1116]
          Length = 163

 Score = 42.2 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRV 82
          L       +  V A  G+GKT +L Q+   LL       P ++L ++  +A+A+ +  RV
Sbjct: 18 LEIIHCNANLAVWAGPGAGKTELLAQKACFLLETERCEWPFSILSISRKRASASNLKERV 77

Query: 83 L 83
           
Sbjct: 78 Q 78


>gi|159901725|ref|YP_001547971.1| superfamily I DNA/RNA helicase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894764|gb|ABX07843.1| Superfamily I DNA and RNA helicase-like [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 722

 Score = 42.2 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 1   MIYHNSFQEHSETI--DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRL 55
           ++ + +  + S ++  D+++  + EQ  L+ S PT + +++ +AGSGKT IL  R+  L
Sbjct: 156 VMVYQALNDRSTSLVDDIVATIQPEQHRLIQSSPTTTLFINGSAGSGKTAILHHRMAYL 214


>gi|118444500|ref|YP_877734.1| superfamily I DNA helicase [Clostridium novyi NT]
 gi|118134956|gb|ABK62000.1| superfamily I DNA helicase [Clostridium novyi NT]
          Length = 761

 Score = 42.2 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++  D+++  + EQ  ++ +D  +   V  +AGSGKT I + R+  LL
Sbjct: 197 NKLKDIVATIQKEQNDIIRADLRKPIIVQGSAGSGKTTIAMHRLAYLL 244


>gi|32471647|ref|NP_864640.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica SH 1]
 gi|32397018|emb|CAD72321.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica SH 1]
          Length = 763

 Score = 42.2 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 13/135 (9%)

Query: 6   SFQEHSETIDLISQTKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           SFQ     ID  ++    Q  A          A +    G+GKT  + + + + +     
Sbjct: 297 SFQFELNDIDFRTELNPPQRDAVAFAMMADDVAIIHGPPGTGKTTTIAEIIAQSVERG-- 354

Query: 62  PSTLLCLTHTKAAAAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
              +L    +  A   +  R++        +   + + + +    +  +    P  + + 
Sbjct: 355 -ERVLACAASNTAVDNLLERLVRLMPNVVRVGHPARVFESLQEHTLDALVESDPTSTVIK 413

Query: 116 KARHLLITILETPGG 130
             R  L  IL     
Sbjct: 414 DLRRELDQILREANR 428


>gi|228964023|ref|ZP_04125153.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228795675|gb|EEM43152.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 995

 Score = 42.2 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 55/242 (22%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRL--LLANAHPSTLLCL 68
           +D++ + + +    S   ++  +  +AGSGKT+    L  R+ +L     NA  S+++ +
Sbjct: 286 LDVVRELERDVQEKS-VGQNYLIQHSAGSGKTNSISWLSHRLAKLHDEENNAVFSSVIVI 344

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T           R          + D+ L   + +++ K      ++K  + L   +   
Sbjct: 345 T----------DR---------RVLDKQLQDAVYQLEHKAGMVERINKDSNQLAQAITGE 385

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFA------IADEE-------QSKKLIEEAKKS 175
             + + T        +Q+FP      S F       I DE         S  L       
Sbjct: 386 TRIIITT--------LQKFPFIMEKVSDFDRKKYAVIIDEAHSSQGGKASTALTNILSDK 437

Query: 176 TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           TL     ++          + E + D   E +I  I+ +     + FF F+   + K IE
Sbjct: 438 TLEDAYEED---------RVAEENLDNIDEQIIETIMKSGKQDNISFFAFTATPKPKTIE 488

Query: 236 KS 237
           K 
Sbjct: 489 KF 490


>gi|309390279|gb|ADO78159.1| type III restriction protein res subunit [Halanaerobium praevalens
           DSM 2228]
          Length = 994

 Score = 42.2 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 42/200 (21%)

Query: 35  WVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEIITAW 89
            +  +AGSGKT+    L  R+  L     +P  S+++ +T           RV       
Sbjct: 309 LIQHSAGSGKTYSITWLAHRLSSLHDRENNPIFSSVIVVT----------DRV------- 351

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
               D+ L   I +I  K    + + K  H L   L     + + TI        Q+FP 
Sbjct: 352 --SLDQQLQETIYQIDHKLGVVAPIKKDSHQLAAELNAGTKIIISTI--------QKFPF 401

Query: 150 EANITS-----HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
             +  S     +FAI  +E       +   +   S+ L+   EL +         N +D+
Sbjct: 402 ILDKVSDTKVKNFAIIIDEAHSSTSGKNILALKESLSLEEAAELDRQAE-----MNSDDV 456

Query: 205 ETLISDIISNRTALKLIFFF 224
           E  I+  +    +L  + FF
Sbjct: 457 EDKINKELKRVQSLDSLSFF 476


>gi|91202096|emb|CAJ75156.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis]
          Length = 613

 Score = 42.2 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 28 SDPTRSAWVSANAGSGKTHIL--VQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRV 82
           D  RS  V + AGSGKT  L      +R   A         ++C+T+T  A   +S R+
Sbjct: 18 IDENRSFSVISGAGSGKTQSLLTALSYIRDSKAGELRKKDQKIICITYTNRAVGVISSRL 77


>gi|311031117|ref|ZP_07709207.1| superfamily I DNA helicase [Bacillus sp. m3-13]
          Length = 771

 Score = 42.2 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL---LANA 60
           S    +   D++S  + EQ     +D  +   V   AGSGKT I + R+   +       
Sbjct: 186 SGSSSNRLTDIVSTIQEEQNRIIRADLNKPIIVQGAAGSGKTTIALHRISYFIYTYQDQF 245

Query: 61  HPSTLLCL 68
            P  L+ L
Sbjct: 246 RPEQLMIL 253


>gi|218780689|ref|YP_002432007.1| exodeoxyribonuclease V, alpha subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762073|gb|ACL04539.1| exodeoxyribonuclease V, alpha subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 589

 Score = 42.2 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTH-TKA 73
              K+    A     S  +S   G+GKT  +  R++RLLL       PS  + +T  T  
Sbjct: 143 DWQKAAAATAVLRKFSV-ISGGPGTGKT-TIAARIIRLLLSLADGRAPS--IAITAPTGK 198

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           AAA    R+LE +             E   I  +      +  AR      +    
Sbjct: 199 AAA----RLLESLGKELSRLGVPPGME-DAIPKRAKTIHRLMGARFNSSQFIHNAD 249


>gi|41053136|dbj|BAD08079.1| putative DNA helicase [Oryza sativa Japonica Group]
          Length = 794

 Score = 42.2 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE------IIT 87
             +    G+GKT +L + ++R +        +L    + AA   M  R+         + 
Sbjct: 337 LIIQGPPGTGKTVLLTELIVRAVQQG---ENVLVTAPSNAAVDNMVERLSNTGLNIVRVG 393

Query: 88  AWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITIL 125
             + +S  + S  + +I   +    + ++ + R  L   L
Sbjct: 394 NPARISPSVASKSLAEIVNGRLEQFRKELERKRSDLRKDL 433


>gi|164423094|ref|XP_959069.2| hypothetical protein NCU09159 [Neurospora crassa OR74A]
 gi|157069944|gb|EAA29833.2| predicted protein [Neurospora crassa OR74A]
          Length = 994

 Score = 42.2 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDP-------TRSAWVSANAGSGKTHILVQRVLRL 55
           +  ++ EH ++         EQ +A D        T    VS   G+GKT  +++  L+L
Sbjct: 363 HVVNWLEHYDSTRFDESLNYEQRIAVDSVLCQNYGTMPYLVSGPPGTGKTKTMIEIALQL 422

Query: 56  LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           +    + + +L    ++ AA  ++ R+ + ++    L
Sbjct: 423 VRNVPNCAHILVCAPSEPAADTLADRLSKSMSRNELL 459


>gi|149923197|ref|ZP_01911610.1| putative helicase [Plesiocystis pacifica SIR-1]
 gi|149815971|gb|EDM75487.1| putative helicase [Plesiocystis pacifica SIR-1]
          Length = 804

 Score = 42.2 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 7   FQEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA---HP 62
            QE +  ID     K +  L + P +    +   AGSGKT + + RV  L   +     P
Sbjct: 249 LQEITALID-----KQQFGLITQPESGVVLIQGGAGSGKTTVALHRVAYLAFQDRRRFSP 303

Query: 63  STLLCLTHTKA 73
             +L +   +A
Sbjct: 304 EKMLIVVFNEA 314


>gi|222480116|ref|YP_002566353.1| DNA replication factor Dna2 [Halorubrum lacusprofundi ATCC 49239]
 gi|222453018|gb|ACM57283.1| DNA replication factor Dna2 [Halorubrum lacusprofundi ATCC 49239]
          Length = 901

 Score = 42.2 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            ID  +       LA D    A +    G+GKT+ +  R +R L+   +   +L    T 
Sbjct: 527 YIDNNASQNEAVSLAVDAEDGALIHGPPGTGKTYTIA-RTIRALVEEGN--RVLLSAFTN 583

Query: 73  AA 74
            A
Sbjct: 584 RA 585


>gi|332190236|gb|AEE28357.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana]
          Length = 1315

 Score = 42.2 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 17   ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            ++  + + +L        A +    G+GKT  +V  V  LL+     S++L  ++T +A 
Sbjct: 907  LNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRG---SSILLASYTNSAV 963

Query: 76   AEMSHRVL-EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
              +  ++  + I       DE +  E+ +      N   +   +  L  +
Sbjct: 964  DNLLIKLKAQGIEFLRIGRDEAVHEEVRESCFSAMNMCSVEDIKKKLDQV 1013


>gi|148360828|ref|YP_001252035.1| putative type I restriction enzyme R protein [Legionella
           pneumophila str. Corby]
 gi|148282601|gb|ABQ56689.1| Putative type I restriction enzyme R protein [Legionella
           pneumophila str. Corby]
          Length = 993

 Score = 42.2 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 32/136 (23%)

Query: 30  PTRSAWVSANAGSGKTHIL---VQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLE 84
           P  S  +  +AGSGK++ +     R++ L      P  +T + +T           R+  
Sbjct: 306 PGHSYLIQHSAGSGKSNTIGWTAHRMITLHDEKDQPIFNTAIIVT----------DRI-- 353

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                  + D  L   + + +  K     +      L   ++    + + TIH F    +
Sbjct: 354 -------VLDRQLQNTVAQFEQTKGVVKKIDGTSRQLKEAIKQGARIIITTIHKFSTDHL 406

Query: 145 --------QQFPLEAN 152
                   ++F +  +
Sbjct: 407 KEISGQSKRRFAVLID 422


>gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 468

 Score = 42.2 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 25/152 (16%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVLRLLLANAH 61
           H S     E     + T  +     +      + A+A  G+GKT       L LL    H
Sbjct: 11  HPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPALNLLAD-IH 69

Query: 62  PS-----TLLCLTHTKAAAAE-----------MSHRVLEIITAWSHLSDEILSAEITKIQ 105
           PS      +L LT T+  AA+           M  R + I+    +     L ++   I 
Sbjct: 70  PSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLLSQPLDIL 129

Query: 106 GKKPNK--SDMSKAR----HLLITILETPGGL 131
              P +    M + R     L + IL+    +
Sbjct: 130 VATPGRLLDHMERGRIDMSRLQMLILDEADRM 161


>gi|260801030|ref|XP_002595399.1| hypothetical protein BRAFLDRAFT_69229 [Branchiostoma floridae]
 gi|229280645|gb|EEN51411.1| hypothetical protein BRAFLDRAFT_69229 [Branchiostoma floridae]
          Length = 1881

 Score = 42.2 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 5   NSFQEHSETIDL-ISQTKSEQLLASD-----PTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           N  ++ SE +DL ++  + E +LA       P     +    G+GKT  L Q   + +L 
Sbjct: 636 NPHRQWSEDLDLRLNAKQKEAILAITSSLTVPLPPILLCGPFGTGKTFTLAQ-AAKQILK 694

Query: 59  NAHPSTLLCLTHTKAAA 75
             + + +L  TH+ +AA
Sbjct: 695 QPN-TRILICTHSNSAA 710


>gi|148378712|ref|YP_001253253.1| helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153933356|ref|YP_001383096.1| putative helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153935697|ref|YP_001386645.1| putative helicase [Clostridium botulinum A str. Hall]
 gi|148288196|emb|CAL82264.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152929400|gb|ABS34900.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931611|gb|ABS37110.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 752

 Score = 42.2 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLC 67
           Q +  +++ ++  ++  V   AGSGKT + + R+  LL        P  ++ 
Sbjct: 209 QREQNKVIRNEDYKNLIVQGPAGSGKTSVALHRIAYLLYKHRDKISPKNIVI 260


>gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 468

 Score = 42.2 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 25/152 (16%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVLRLLLANAH 61
           H S     E     + T  +     +      + A+A  G+GKT       L LL    H
Sbjct: 11  HPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPALNLLAD-IH 69

Query: 62  PS-----TLLCLTHTKAAAAE-----------MSHRVLEIITAWSHLSDEILSAEITKIQ 105
           PS      +L LT T+  AA+           M  R + I+    +     L ++   I 
Sbjct: 70  PSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLLSQPLDIL 129

Query: 106 GKKPNK--SDMSKAR----HLLITILETPGGL 131
              P +    M + R     L + IL+    +
Sbjct: 130 VATPGRLLDHMERGRIDMSRLQMLILDEADRM 161


>gi|331014296|gb|EGH94352.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 830

 Score = 42.2 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +  +++++++  W
Sbjct: 147 STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFINKLIDVMALW 204

Query: 90  SHLSDEILSAEITK 103
            H  ++  + ++ +
Sbjct: 205 GHTLEQKQARDLVR 218


>gi|302671613|ref|YP_003831573.1| UvrD/REP family ATP-dependent DNA helicase [Butyrivibrio
           proteoclasticus B316]
 gi|302396086|gb|ADL34991.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 680

 Score = 42.2 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLL 57
           M+  +  Q  S+ +  I+ T  K +  +   P     +    AGSGKT +L+QR+  L  
Sbjct: 190 MLLQSLSQMRSDKMQAITATIQKEQNTVIRYPDVPVLLVNGIAGSGKTSVLLQRIAYLFY 249

Query: 58  ANAH---PSTLLCLT 69
                  P  +  +T
Sbjct: 250 QKRKTLRPDQVCLMT 264


>gi|15221015|ref|NP_172361.1| emb2411 (embryo defective 2411); ATP binding / ATP-dependent DNA
           helicase/ DNA binding [Arabidopsis thaliana]
 gi|332190235|gb|AEE28356.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana]
          Length = 1296

 Score = 42.2 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++  + + +L        A +    G+GKT  +V  V  LL+     S++L  ++T +A 
Sbjct: 888 LNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRG---SSILLASYTNSAV 944

Query: 76  AEMSHRVL-EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
             +  ++  + I       DE +  E+ +      N   +   +  L  +
Sbjct: 945 DNLLIKLKAQGIEFLRIGRDEAVHEEVRESCFSAMNMCSVEDIKKKLDQV 994


>gi|146301398|ref|YP_001195989.1| superfamily I DNA/RNA helicase-like protein [Flavobacterium
           johnsoniae UW101]
 gi|146155816|gb|ABQ06670.1| Superfamily I DNA and RNA helicase-like protein [Flavobacterium
           johnsoniae UW101]
          Length = 637

 Score = 42.2 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 54/146 (36%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            S  + A AGSGKT  L++ +  +     +        + C+T+T AA  E    +L+ +
Sbjct: 24  TSFVMIAGAGSGKTTSLIKSLKYIEETEGINLRQEGKKIACITYTTAAEKE----ILDDV 79

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                                                         V TIH+F   +++ 
Sbjct: 80  G---------------------------------------HDSFFHVSTIHSFLWELIRP 100

Query: 147 FPLEA------NITSHFAIADEEQSK 166
           F  +        I S      E ++K
Sbjct: 101 FQKDIKKWVSSKIDSKLEELQEARAK 126


>gi|268580185|ref|XP_002645075.1| Hypothetical protein CBG16740 [Caenorhabditis briggsae]
          Length = 617

 Score = 42.2 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 12/114 (10%)

Query: 19  QTKSEQLLASDPTRS-----AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
                QL+A   + +       +    G+GKT+ L   + R++ A      ++ LT TK 
Sbjct: 102 NLNKSQLIAVRMSMNEDRPLVCIQGGPGTGKTYTLAHLLFRIMRAK---KRVVVLTSTKE 158

Query: 74  A---AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           A     EM+ ++L+       + +  L  +I               A H     
Sbjct: 159 ALKILKEMTEKLLKEREQEFQVHEHAL-MDINTYLALIDASEQAKDAVHQFKDA 211


>gi|329849603|ref|ZP_08264449.1| uvrD/REP helicase family protein [Asticcacaulis biprosthecum C19]
 gi|328841514|gb|EGF91084.1| uvrD/REP helicase family protein [Asticcacaulis biprosthecum C19]
          Length = 693

 Score = 42.2 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
             E L++ D +    VS +AG+GKT + + R + L+  +     +L  T +K  A  ++ 
Sbjct: 240 DQEALVSRDFSGPVRVSGSAGTGKTIVALHRAVHLVRQHPG-KRVLLTTFSKGLAHALNA 298

Query: 81  RVLEIITAWSHLSD-------EILSAEITKIQGKKPNKSDMSKARHLLITI 124
           R+  ++ + S L+          +  ++      +PN +  ++ R  LI  
Sbjct: 299 RLKLLVGSDSELTSCIDVKAFAAVGYDLYAANFGQPNLASSAQVRTWLIKA 349


>gi|254424367|ref|ZP_05038085.1| UvrD/REP helicase subfamily [Synechococcus sp. PCC 7335]
 gi|196191856|gb|EDX86820.1| UvrD/REP helicase subfamily [Synechococcus sp. PCC 7335]
          Length = 786

 Score = 42.2 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 43/165 (26%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80
           ++ LA   +    VSA  GSGK+  +       +  +       L+ +T T++AAA +  
Sbjct: 33  QRALAQWRSGPLAVSAVPGSGKSTGMAAGAAIAIAHHQLHARKQLVLVTFTRSAAASLKA 92

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           +V + +                                              V T+H   
Sbjct: 93  KVRKHLKDLRLPQ-----------------------------------NSFVVHTLHGLA 117

Query: 141 EAIMQQFPLEANI------TSHFAIADEEQSKKLIEEAKKSTLAS 179
             I  + P  +NI      +    +    QS +LI  A +  +  
Sbjct: 118 LNIATRHPEISNINLPSLDSDGTTLVSPTQSHRLIRMAVERWIEE 162


>gi|170030070|ref|XP_001842913.1| potentail helicase MOV-10 [Culex quinquefasciatus]
 gi|167865919|gb|EDS29302.1| potentail helicase MOV-10 [Culex quinquefasciatus]
          Length = 896

 Score = 42.2 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
             G+GKT  LV+ ++++   +     +L    + AA  E++ R+L  + + + L     S
Sbjct: 459 PPGTGKTTTLVEAIVQICTRHPS-EHILVTAQSNAACDELAVRLLNYLPSKNLLRFFSRS 517

Query: 99  AEITKIQGKKPNKS 112
            E    +  +P K 
Sbjct: 518 VEKRIDELPEPLKQ 531


>gi|302816629|ref|XP_002989993.1| hypothetical protein SELMODRAFT_130836 [Selaginella moellendorffii]
 gi|300142304|gb|EFJ09006.1| hypothetical protein SELMODRAFT_130836 [Selaginella moellendorffii]
          Length = 826

 Score = 42.2 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 11  SETIDLISQTKSEQLLA---SDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLL 66
           + T+   S  +S++       D +R   V     G+GKT+++ + +++ +        +L
Sbjct: 351 ASTLSGASFDESQRRAIQLGLDKSRPVAVIQGPPGTGKTNVVTEIIIQAVARG---DKVL 407

Query: 67  CLTHTKAAAAEMSHRVLEI 85
               T AA   +  R+ + 
Sbjct: 408 ATAPTNAAVDNLVDRLSDT 426


>gi|296106108|ref|YP_003617808.1| Putative type I restriction enzyme R protein [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295648009|gb|ADG23856.1| Putative type I restriction enzyme R protein [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 991

 Score = 42.2 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 38/209 (18%)

Query: 30  PTRSAWVSANAGSGKTHIL---VQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLE 84
           P  S  +  +AGSGK++ +     R++ L      P  +T + +T           R+  
Sbjct: 306 PGHSYLIQHSAGSGKSNTIGWTAHRMITLHDEKDQPIFNTAIIVT----------DRI-- 353

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                  + D  L   + + +  K     +      L   ++    + + TIH F    +
Sbjct: 354 -------VLDRQLQNTVAQFEQTKGVVKKIDGTSRQLKEAIKQGARIIITTIHKFSTEHL 406

Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           ++      I+       + +   LI+EA      S    + + L K        ++  DI
Sbjct: 407 KE------ISGQ----SKRRFAVLIDEAH----GSQSGKHADNLSKTLTREESNNSPSDI 452

Query: 205 ETLISDIISNRTALKLIFFFFSYLWRRKI 233
           E +I+D    R     I +F      R +
Sbjct: 453 EDMIADYQRQRGPQANISYFAFTATPRNV 481


>gi|268529120|ref|XP_002629686.1| Hypothetical protein CBG00906 [Caenorhabditis briggsae]
 gi|187038690|emb|CAP22333.1| hypothetical protein CBG_00906 [Caenorhabditis briggsae AF16]
          Length = 2047

 Score = 41.8 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 11  SETIDLISQTK---SEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAH---P 62
           S+ ++    T    S+++   +  +   + +    G+GKTHI VQ V  +L    H    
Sbjct: 663 SKLLNDFHPTNMDESQRVAFCNTFKHELSLIQGPPGTGKTHIGVQIVKTMLHNRGHWKIT 722

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           S +L +  T +    +  R+ ++I     LS +    ++ +  G K     + + + L  
Sbjct: 723 SPILVVCFTNSGLDNLLERIHQMILDDEDLSRDDGKPKMIRY-GMKCESDYLKRQKVLRF 781

Query: 123 TILETPGG 130
            + +   G
Sbjct: 782 DVYDQYRG 789


>gi|309357998|emb|CAP34633.2| hypothetical protein CBG_16740 [Caenorhabditis briggsae AF16]
          Length = 609

 Score = 41.8 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 12/114 (10%)

Query: 19  QTKSEQLLASDPTRS-----AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
                QL+A   + +       +    G+GKT+ L   + R++ A      ++ LT TK 
Sbjct: 94  NLNKSQLIAVRMSMNEDRPLVCIQGGPGTGKTYTLAHLLFRIMRAK---KRVVVLTSTKE 150

Query: 74  A---AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           A     EM+ ++L+       + +  L  +I               A H     
Sbjct: 151 ALKILKEMTEKLLKEREQEFQVHEHAL-MDINTYLALIDASEQAKDAVHQFKDA 203


>gi|257051542|ref|YP_003129375.1| DNA replication factor Dna2 [Halorhabdus utahensis DSM 12940]
 gi|256690305|gb|ACV10642.1| DNA replication factor Dna2 [Halorhabdus utahensis DSM 12940]
          Length = 902

 Score = 41.8 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 6   SFQEHSETIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +F++ +ET    +  +      A      A +    G+GKT+ L   V  L+        
Sbjct: 509 AFEDVAETFVENNPAQDRAVRRAVGAEDFALIHGPPGTGKTYTLATLVDALVERG---ER 565

Query: 65  LLCLTHTKAAAAEMSHRVLEI-ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           +L    T  A       +LE  +     +  E    E  K     P  +  ++A  L   
Sbjct: 566 VLLSAFTNRAVDNAVEALLEQGVEDVVRMGTETGVREDLKHVRLDPAGNPDARADELTDA 625

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE----EAKKSTLAS 179
            +                 IM++          F +A  +++ +L E     A       
Sbjct: 626 PVVAATTATCG------SRIMRE--------QDFDVAVIDEAGQLTEPGALAAVARAERF 671

Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDI 211
           +++ ++E+L      ++   +D       +D+
Sbjct: 672 VLVGDHEQLPP----VVRAEDDIADRDATADL 699


>gi|288871490|ref|ZP_06117783.2| UvrD/Rep helicase family protein [Clostridium hathewayi DSM
          13479]
 gi|288863272|gb|EFC95570.1| UvrD/Rep helicase family protein [Clostridium hathewayi DSM
          13479]
          Length = 565

 Score = 41.8 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 15 DLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLL 56
          D+I+  + EQ       P  +  V   AGSGKT + + R+  +L
Sbjct: 45 DIIATIQQEQNEIIRKRPQHNVIVQGGAGSGKTTVAMHRISYIL 88


>gi|39938841|ref|NP_950607.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39721950|dbj|BAD04440.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 1038

 Score = 41.8 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 45/197 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L + +K ++ + +      ++   AGSGKT IL++++ +       P  +L  T    A 
Sbjct: 2   LFNLSKEQKDIINSDASCMYIHGGAGSGKTTILIEKLRQK--EKEKPL-ILVAT---NAT 55

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +   + + +  +S L ++  S    +++    +  +                   ++T
Sbjct: 56  KNI---IYDKL--FSSLKEDYPSYNDDELEKYLKDNYE-------------------IRT 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQ-SKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+F  +              + I +E    +K I++  K  +  ++L  N++LK  F E
Sbjct: 92  FHSFAYS-----CYL-----KYNIFNETAKQRKFIDDETKLNILKLILKENQDLKLYFKE 141

Query: 195 ILEISNDEDIETLISDI 211
                       L+ ++
Sbjct: 142 ----QRKYSFRKLLQEL 154


>gi|255727729|ref|XP_002548790.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240133106|gb|EER32662.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 788

 Score = 41.8 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 59/149 (39%), Gaps = 12/149 (8%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           IY+NS  +  E   ++++++   +  S      ++    G+GKT  + + V++LL +N +
Sbjct: 308 IYNNSTVDKLENK-MLNESQRRAVFTSLYNPVTFLQGPPGTGKTSAIYEIVVQLLQSNEY 366

Query: 62  PSTLLCLTHTKAAAAEMSHRVLE-------IITAWSHLSDEILSAEITKIQGKKPNKSDM 114
           P  +L    +  +   ++ ++++        I A   L++      +  I         +
Sbjct: 367 P--ILVTAASNVSVDNIAEKLMKSHPETLIRIPATQKLAEYDRKHPLASICLHHMVYDSL 424

Query: 115 SKARHLLITILETPGGLKV--QTIHAFCE 141
           +  +  +   L       +      +FC 
Sbjct: 425 TPEQQRIADRLYHKDVASIDKCEFDSFCN 453


>gi|283796105|ref|ZP_06345258.1| type I site-specific deoxyribonuclease [Clostridium sp. M62/1]
 gi|291076319|gb|EFE13683.1| type I site-specific deoxyribonuclease [Clostridium sp. M62/1]
          Length = 1001

 Score = 41.8 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 22/114 (19%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRL--LLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            ++  +  +AGSGKT+    L  R   L          T+  +T           R++  
Sbjct: 308 EKNYLIEHSAGSGKTNTIAWLAHRFASLHDRENKVIFDTVCIIT----------DRIVVD 357

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
               + +      A + K+  +K    D++ A       L     + V TIH F
Sbjct: 358 RQLQNAVLSLEHKAGLIKVMDEKCTSKDLADA-------LNGNTKIIVTTIHKF 404


>gi|330952505|gb|EGH52765.1| hypothetical protein PSYCIT7_14244 [Pseudomonas syringae Cit 7]
          Length = 487

 Score = 41.8 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +Q       +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQQPAIHSSAKKLLVQAFAGTGKTTTLV 33


>gi|39938537|ref|NP_950303.1| hypothetical protein PAM_051 [Onion yellows phytoplasma OY-M]
 gi|39721646|dbj|BAD04136.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 425

 Score = 41.8 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 78/197 (39%), Gaps = 45/197 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L + +K ++ + +      ++   AGSGKT IL++++ +       P  +L  T    A 
Sbjct: 2   LFNLSKEQKDIINSDASCMYIHGGAGSGKTTILIEKLRQK--EKEKPL-ILVAT---NAT 55

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +   + + +  +S L ++  S    +++    +  +                   ++T
Sbjct: 56  KNI---IYDKL--FSSLKEDCPSYNDDELEKYLKDNYE-------------------IRT 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQ-SKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+F  +              + I +E    +K I++  K  +  ++L  N++LK  F E
Sbjct: 92  FHSFAYS-----CYL-----KYNIFNETAKQRKFIDDETKLNILKLILKENQDLKLYFKE 141

Query: 195 ILEISNDEDIETLISDI 211
            ++ S       L+ ++
Sbjct: 142 QIKYS----FRKLLQEL 154


>gi|28869969|ref|NP_792588.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853214|gb|AAO56283.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 748

 Score = 41.8 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
           S +V A AG+GK+  LV R+  LLL        + +  +T T+ +  +  +++++++  W
Sbjct: 65  STYVIAGAGAGKSTSLVLRI--LLLHHYLGFELNAMTVVTFTRESRKDFINKLIDVMALW 122

Query: 90  SHLSDEILSAEITK 103
            H  ++  + ++ +
Sbjct: 123 GHTLEQKQARDLVR 136


>gi|167621144|ref|ZP_02389775.1| putative DNA helicase [Burkholderia thailandensis Bt4]
          Length = 692

 Score = 41.8 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             QL+  +   +A VS +AG+GKT + + R + L   +     LLC T +   A  +   
Sbjct: 237 QRQLVDRNYNGAARVSGSAGTGKTVVALHRAVHLARKDEDARVLLC-TFSDTLANALRGN 295

Query: 82  VLEIITAWSHLSD-------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +I     L +       E +   +  ++  KP  +   +   LL        GLK
Sbjct: 296 LYRLIWNTPTLGERIDVAAMEAIGIRLYSVEFGKPALAGRDEISTLLRAAAAQVDGLK 353


>gi|39939013|ref|NP_950779.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722122|dbj|BAD04612.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 1038

 Score = 41.8 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 45/197 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L + +K ++ + +      ++   AGSGKT IL++++ +       P  +L  T    A 
Sbjct: 2   LFNLSKEQKDIINSYASCMYIHGGAGSGKTTILIEKLRQK--EKEKPL-ILVAT---NAT 55

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +   + + +  +S L ++  S    +++    +  +                   ++T
Sbjct: 56  KNI---IYDKL--FSSLKEDYPSYNDDELEKYLKDNYE-------------------IRT 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQ-SKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+F  +              + I +E    +K I++  K  +  ++L  N++LK  F E
Sbjct: 92  FHSFAYS-----CYL-----KYNIFNETAKQRKFIDDETKLNILKLILKENQDLKLYFKE 141

Query: 195 ILEISNDEDIETLISDI 211
                       L+ ++
Sbjct: 142 ----QRKYSFRKLLQEL 154


>gi|304315214|ref|YP_003850361.1| type I restriction-modification enzyme, subunit R
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588673|gb|ADL59048.1| predicted type I restriction-modification enzyme, subunit R
           [Methanothermobacter marburgensis str. Marburg]
          Length = 962

 Score = 41.8 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 42/216 (19%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE--IIT 87
           P ++  +  + GSGKT  +      LL                        R+ +  I+ 
Sbjct: 278 PGQNYLIQHSPGSGKTKTISWLAHGLLNKFDSFDK----------------RIYDMVIVV 321

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
           +   + D  L  +I  I+ +      + +  H L   L+T   + V T        +Q+F
Sbjct: 322 SDRRVIDRQLQDQIKAIERRIGIVEKIDRDSHQLAEALKTGSNIVVTT--------LQKF 373

Query: 148 PLEA----NITSH--FAIADEEQSKK--LIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
           P       ++       I DE  S +   +    K  L+   L+    +        ++S
Sbjct: 374 PFVMEEVRDLPKRKYAVIIDEAHSSQSGSLARKMKQVLSVKSLEEAALID-------DVS 426

Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           ND  +E L+ +I S R    + FF F+   + K +E
Sbjct: 427 NDVQME-LLHEIESFRDLKNVSFFAFTATPKNKTLE 461


>gi|327334155|gb|EGE75869.1| UvrD/Rep helicase [Propionibacterium acnes HL097PA1]
          Length = 700

 Score = 41.8 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
            AG+GKT +++ R + L   N   + ++  T TK  A E+
Sbjct: 288 GAGTGKTVVILHRAVSLARENPG-ARIIITTFTKNLAHEL 326


>gi|256423224|ref|YP_003123877.1| hypothetical protein Cpin_4220 [Chitinophaga pinensis DSM 2588]
 gi|256038132|gb|ACU61676.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 628

 Score = 41.8 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 9/58 (15%)

Query: 28 SDPTRSAWVSANAGSGKTHILVQ-------RVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           D  +S  + A AGSGKT  L++       R    L A      + C+T+T  A  E+
Sbjct: 21 IDTKQSFVMIAGAGSGKTTSLIKGLDYIRSRYGNQLRAKR--QKIACVTYTTNAVDEI 76


>gi|152002521|dbj|BAF73545.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-W]
          Length = 1040

 Score = 41.8 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 45/197 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L + +K ++ + +      ++   AGSGKT IL++++ +       P  +L  T    A 
Sbjct: 2   LFNLSKEQKDIINSDASCMYIHGGAGSGKTTILIEKLRQK--EKEKPL-ILVAT---NAT 55

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +   + + +  +S L ++  S    +++    +  +                   ++T
Sbjct: 56  KNI---IYDKL--FSSLKEDYPSYNDDELEKYLKDNYE-------------------IRT 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQ-SKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+F  +              + I +E    +K I++  K  +  ++L  N++LK  F E
Sbjct: 92  FHSFAYS-----CYL-----KYNIFNETAKQRKFIDDETKLNILKLILKENQDLKLYFKE 141

Query: 195 ILEISNDEDIETLISDI 211
                       L+ ++
Sbjct: 142 ----QRKYSFRKLLQEL 154


>gi|282866675|ref|ZP_06275716.1| putative DNA helicase [Streptomyces sp. ACTE]
 gi|282558461|gb|EFB64022.1| putative DNA helicase [Streptomyces sp. ACTE]
          Length = 502

 Score = 41.8 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 38/196 (19%)

Query: 17  ISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           ++ T  +   A      +   + A AG+GKT  L                LL  T T+  
Sbjct: 1   MNPTDEQTAAADAFHAGQHLALQAGAGTGKTTTLA---------------LLARTTTRR- 44

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
                      +     ++ +  +     +Q K  +    +   H     L  P     Q
Sbjct: 45  --------GRYLAYNRAIAQDACTRFPDTVQCKTAHALAYAAVGHRYTHRLNAPRRPAWQ 96

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
           T                 I     I D E +++ +  A   T+A      +E +      
Sbjct: 97  T------------GQMLGINKAVRIGDREVTQRALSNATLRTVARFCHTADEAITPHHVP 144

Query: 195 ILEISNDEDIETLISD 210
            L   +D D+ T ++ 
Sbjct: 145 RLRGLDDTDLHTQLAA 160


>gi|253583367|ref|ZP_04860565.1| helicase [Fusobacterium varium ATCC 27725]
 gi|251833939|gb|EES62502.1| helicase [Fusobacterium varium ATCC 27725]
          Length = 1624

 Score = 41.8 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 11  SETIDLISQTKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +E I    ++  EQ+  ++      +  V    G+GKTH +   +   L        +L 
Sbjct: 350 AEEILFTKESNGEQIEIAEKIERNNAVVVQGPPGTGKTHTIANLLGHFLAQG---KNVLV 406

Query: 68  LTHTKAAAAEMSHRVLEIITAW 89
            +HTK A   +  ++ + I   
Sbjct: 407 TSHTKKALKVLKEKIPKNIQGL 428


>gi|190150116|ref|YP_001968641.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263452|ref|ZP_07545067.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189915247|gb|ACE61499.1| putative ATP-dependent helicase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871095|gb|EFN02824.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 591

 Score = 41.8 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Y       SE    +S TK ++LL  S+  +   +  +AGSGKT +L +R +        
Sbjct: 193 YLKPTFHQSEISQEVSYTKEQELLTISENGKRQKIKGSAGSGKTLVLAKRAVN--AHMRT 250

Query: 62  PSTLLCLTH 70
              +L LT 
Sbjct: 251 HKKILILTF 259


>gi|308271380|emb|CBX27988.1| hypothetical protein N47_G33120 [uncultured Desulfobacterium sp.]
          Length = 712

 Score = 41.8 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +  QL+  D    A VS +AG+GKT + + R + L   N   + +L  T +   A  ++ 
Sbjct: 254 EQRQLVEKDYNGPARVSGSAGTGKTVVALHRAVFLARTNPD-ARVLLTTFSDTLANALNT 312

Query: 81  RVLEIITAWSHLSD-------EILSAEITKIQGKKPNKSDMSKARHLLIT 123
           ++  +I     +++       + +   + ++   +P  +     R LL  
Sbjct: 313 KLRRLIGNEPRIAEHLEVYSLDYIGQRLYELNFGRPKIASKEVVRQLLKE 362


>gi|289616444|emb|CBI56833.1| unnamed protein product [Sordaria macrospora]
          Length = 1065

 Score = 41.8 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 20  TKSEQLLASDP-------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              EQ +A D        T    +S   G+GKT  +++  L+L+      S +L    ++
Sbjct: 397 LNYEQRIAVDSVLCQNYGTMPYLISGPPGTGKTKTMIEIALQLVRNVPDCSHILVCAPSE 456

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
            AA  ++ R+ + +     L     + +  ++ G
Sbjct: 457 PAADTLADRLSKSMNRTELLRLNRPTRDSREVLG 490


>gi|21711689|gb|AAM75035.1| LD17208p [Drosophila melanogaster]
          Length = 1261

 Score = 41.8 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 19  QTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           Q ++ + +A  P       V    G+GKT  +V+ + +L +     + +L L  +  A  
Sbjct: 544 QMQAVRQIALSPRLKAPYIVFGPPGTGKTSTIVEAIYQLYINRPE-THILVLAGSNTACD 602

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
           E++ R+L  I          L+   +    ++ +  D
Sbjct: 603 EVALRLLRAIAKAPQSQPRPLTRIFSANCDRRIDNID 639


>gi|320543913|ref|NP_001188923.1| CG6701, isoform B [Drosophila melanogaster]
 gi|320543915|ref|NP_001188924.1| CG6701, isoform C [Drosophila melanogaster]
 gi|320543917|ref|NP_610920.3| CG6701, isoform D [Drosophila melanogaster]
 gi|318068591|gb|AAF58307.2| CG6701, isoform B [Drosophila melanogaster]
 gi|318068592|gb|ADV37170.1| CG6701, isoform C [Drosophila melanogaster]
 gi|318068593|gb|AAM68567.3| CG6701, isoform D [Drosophila melanogaster]
          Length = 1333

 Score = 41.8 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 19  QTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           Q ++ + +A  P       V    G+GKT  +V+ + +L +     + +L L  +  A  
Sbjct: 616 QMQAVRQIALSPRLKAPYIVFGPPGTGKTSTIVEAIYQLYINRPE-THILVLAGSNTACD 674

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
           E++ R+L  I          L+   +    ++ +  D
Sbjct: 675 EVALRLLRAIAKAPQSQPRPLTRIFSANCDRRIDNID 711


>gi|242008842|ref|XP_002425206.1| helicase with zinc finger protein domain helz, putative [Pediculus
           humanus corporis]
 gi|212508927|gb|EEB12468.1| helicase with zinc finger protein domain helz, putative [Pediculus
           humanus corporis]
          Length = 1766

 Score = 41.8 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 11/134 (8%)

Query: 9   EHSETIDL-ISQTKSEQLLASDPTRS-----AWVSANAGSGKTHILVQRVLRLLLANAHP 62
           + ++ ID  ++  + E ++A     S       +    G+GKT+ L Q + +LL      
Sbjct: 743 QWTDIIDSRLNLKQREAVVAITTPISTALPPILIIGPFGTGKTYTLAQAIKQLLTQPEA- 801

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +L  TH+ +AA      + + +  +     E           +     +    ++ LI
Sbjct: 802 -KVLVCTHSNSAAD---LYIKDYLHPYVEAGHEEAKPLRIYYHKRWVATVNSVVQKYCLI 857

Query: 123 TILETPGGLKVQTI 136
            ++      K+ T+
Sbjct: 858 EMVNGIRTFKIPTL 871


>gi|168178101|ref|ZP_02612765.1| putative helicase [Clostridium botulinum NCTC 2916]
 gi|182670516|gb|EDT82490.1| putative helicase [Clostridium botulinum NCTC 2916]
          Length = 752

 Score = 41.8 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLC 67
           Q +  +++ ++  ++  V   AGSGKT + + R+  LL        P  ++ 
Sbjct: 209 QREQNKVIRNEEYKNLIVQGPAGSGKTSVALHRIAYLLYKHRDKISPQNIVI 260


>gi|15804881|ref|NP_290922.1| putative helicase [Escherichia coli O157:H7 EDL933]
 gi|12519310|gb|AAG59488.1|AE005661_4 putative helicase [Escherichia coli O157:H7 str. EDL933]
          Length = 704

 Score = 41.8 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAA 76
            S++ L   P      V   AG+GKT + + R  R L   LA+     +L  T T+  AA
Sbjct: 242 PSQRKLVESPANGPVRVLGGAGTGKTVVAMHR-ARWLSQRLADKPGKKVLFTTFTRNLAA 300

Query: 77  EMSHRVLEIITAWSHLS------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           ++   +  + T            D  +S ++ +         D  + R            
Sbjct: 301 DIRANLQRLCTREEMARIDVVNIDAWMSDQLKRHGYDFRVVYDSDEGRRKCWNYA----- 355

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF 157
                        +QQ P E  +  +F
Sbjct: 356 -------------LQQAPAELGLPDNF 369


>gi|229462542|gb|ACQ66054.1| MIP09682p [Drosophila melanogaster]
          Length = 1270

 Score = 41.8 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 19  QTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           Q ++ + +A  P       V    G+GKT  +V+ + +L +     + +L L  +  A  
Sbjct: 553 QMQAVRQIALSPRLKAPYIVFGPPGTGKTSTIVEAIYQLYINRPE-THILVLAGSNTACD 611

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
           E++ R+L  I          L+   +    ++ +  D
Sbjct: 612 EVALRLLRAIAKAPQSQPRPLTRIFSANCDRRIDNID 648


>gi|262194051|ref|YP_003265260.1| plasmid stabilization system [Haliangium ochraceum DSM 14365]
 gi|262077398|gb|ACY13367.1| plasmid stabilization system [Haliangium ochraceum DSM 14365]
          Length = 712

 Score = 41.8 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 62/145 (42%), Gaps = 23/145 (15%)

Query: 8   QEHSETID-----LISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL---- 56
           Q+ ++ +D      + +   EQ   +D        V    G+GK+ + + R+  L+    
Sbjct: 214 QDLNDFLDGTLSGFLLRLDEEQARVADRQSGGPMLVKGGPGTGKSLVALYRIRALMHPDA 273

Query: 57  ----LANAHPSTLLCLTHTKA---AAAEMSHRVL--EIITAWSHLSDEILSAEITKIQG- 106
                    P  +L +T+TKA   A+ ++  R+L  + + +   ++ + L++++ K    
Sbjct: 274 RERWFEGRRP-RVLFVTYTKALTRASEQLLRRLLAEDDLDSVEIMTLDALASQLAKSVAG 332

Query: 107 -KKPNKSDMSKARHLLITILETPGG 130
            K+  +  M KA       +  PGG
Sbjct: 333 HKRAMRPQMEKALADARERVRFPGG 357


>gi|300928446|ref|ZP_07143977.1| UvrD/REP helicase [Escherichia coli MS 187-1]
 gi|300463544|gb|EFK27037.1| UvrD/REP helicase [Escherichia coli MS 187-1]
          Length = 704

 Score = 41.8 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAA 76
            S++ L   P      V   AG+GKT + + R  R L   LA+     +L  T T+  AA
Sbjct: 242 PSQRKLVESPANGPVRVLGGAGTGKTVVAMHR-ARWLSQRLADKPGKKVLFTTFTRNLAA 300

Query: 77  EMSHRVLEIITAWSHLS------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           ++   +  + T            D  +S ++ +         D  + R            
Sbjct: 301 DIRANLQRLCTREEMARIDVVNIDAWMSDQLKRHGYDFRVVYDSDEGRRKCWNYA----- 355

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF 157
                        +QQ P E  +  +F
Sbjct: 356 -------------LQQAPAELGLPDNF 369


>gi|241634349|ref|XP_002410507.1| splicing endonuclease positive effector sen1, putative [Ixodes
           scapularis]
 gi|215503436|gb|EEC12930.1| splicing endonuclease positive effector sen1, putative [Ixodes
           scapularis]
          Length = 1103

 Score = 41.8 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 16  LISQTKSEQLLASD-------PTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTL 65
           L++    +Q + S        P     V       G+GKTH L+  V+  L  ++H  ++
Sbjct: 593 LLNYNSQQQEVVSSAVHAMNMPGSDIRVIILHGPPGTGKTHTLIGIVMGCLFGSSH-RSI 651

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +  + AA  E+  R+L         S ++   ++ K+     +K    + R +++  L
Sbjct: 652 LIVAPSNAAVDEIGRRLLA--QRAVQSSQKVPGGQVLKLVRVGQDKMIHPEVRGIVLEEL 709


>gi|15834518|ref|NP_313291.1| DNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|168749541|ref|ZP_02774563.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754869|ref|ZP_02779876.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760544|ref|ZP_02785551.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766578|ref|ZP_02791585.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773992|ref|ZP_02798999.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4196]
 gi|168782814|ref|ZP_02807821.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784940|ref|ZP_02809947.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC869]
 gi|168797869|ref|ZP_02822876.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC508]
 gi|195937312|ref|ZP_03082694.1| UvrD/REP helicase [Escherichia coli O157:H7 str. EC4024]
 gi|208809708|ref|ZP_03252045.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812333|ref|ZP_03253662.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821996|ref|ZP_03262316.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400456|ref|YP_002273831.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325830|ref|ZP_03441914.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796307|ref|YP_003081144.1| putative helicase [Escherichia coli O157:H7 str. TW14359]
 gi|261226664|ref|ZP_05940945.1| UvrD/REP helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256949|ref|ZP_05949482.1| UvrD/REP helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285689|ref|YP_003502507.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O55:H7 str. CB9615]
 gi|13364742|dbj|BAB38687.1| putative DNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|187770233|gb|EDU34077.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016185|gb|EDU54307.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4113]
 gi|188999756|gb|EDU68742.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357873|gb|EDU76292.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364136|gb|EDU82555.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4486]
 gi|189369006|gb|EDU87422.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189375126|gb|EDU93542.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC869]
 gi|189379411|gb|EDU97827.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC508]
 gi|208729509|gb|EDZ79110.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733610|gb|EDZ82297.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208742119|gb|EDZ89801.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161856|gb|ACI39289.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217322051|gb|EEC30475.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595707|gb|ACT75068.1| putative helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290765562|gb|ADD59523.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190580|gb|EFW65230.1| putative DNA helicase [Escherichia coli O157:H7 str. EC1212]
 gi|320639033|gb|EFX08679.1| UvrD/REP helicase [Escherichia coli O157:H7 str. G5101]
 gi|320644403|gb|EFX13468.1| UvrD/REP helicase [Escherichia coli O157:H- str. 493-89]
 gi|320649721|gb|EFX18245.1| UvrD/REP helicase [Escherichia coli O157:H- str. H 2687]
 gi|320654769|gb|EFX22738.1| UvrD/REP helicase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660622|gb|EFX28083.1| UvrD/REP helicase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665550|gb|EFX32596.1| UvrD/REP helicase [Escherichia coli O157:H7 str. LSU-61]
 gi|326345382|gb|EGD69125.1| putative DNA helicase [Escherichia coli O157:H7 str. 1125]
 gi|326346763|gb|EGD70497.1| putative DNA helicase [Escherichia coli O157:H7 str. 1044]
          Length = 704

 Score = 41.8 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAA 76
            S++ L   P      V   AG+GKT + + R  R L   LA+     +L  T T+  AA
Sbjct: 242 PSQRKLVESPANGPVRVLGGAGTGKTVVAMHR-ARWLSQRLADKPGKKVLFTTFTRNLAA 300

Query: 77  EMSHRVLEIITAWSHLS------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           ++   +  + T            D  +S ++ +         D  + R            
Sbjct: 301 DIRANLQRLCTREEMARIDVVNIDAWMSDQLKRHGYDFRVVYDSDEGRRKCWNYA----- 355

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF 157
                        +QQ P E  +  +F
Sbjct: 356 -------------LQQAPAELGLPDNF 369


>gi|299821939|ref|ZP_07053827.1| superfamily I DNA/RNA helicase [Listeria grayi DSM 20601]
 gi|299817604|gb|EFI84840.1| superfamily I DNA/RNA helicase [Listeria grayi DSM 20601]
          Length = 715

 Score = 41.8 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRL---L 56
           + HN+    ++  D+ S  + EQ       ++    V+  AGSGKT  ++QR+  L   L
Sbjct: 195 LEHNAT---TQMKDITSTIQQEQNRIIRDQKNHIILVNGVAGSGKTSTIMQRIAYLLYSL 251

Query: 57  LANAHPSTLLCL 68
                   +L L
Sbjct: 252 RQEITVDNMLIL 263


>gi|219666700|ref|YP_002457135.1| superfamily I DNA/RNA helicase [Desulfitobacterium hafniense DCB-2]
 gi|219536960|gb|ACL18699.1| superfamily I DNA/RNA helicase [Desulfitobacterium hafniense DCB-2]
          Length = 1584

 Score = 41.8 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 35   WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            +V    G+GKT  L + ++  ++  A+   +L LT T  +A  +  R++E++      +D
Sbjct: 1122 FVFGPPGTGKTTYLAREIILPIMQKANALKVLVLTPTNKSADVLVRRLMEVMGVDHSYND 1181


>gi|193076198|gb|ABO10818.2| exonuclease V alpha subunit [Acinetobacter baumannii ATCC 17978]
          Length = 587

 Score = 41.8 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E +DL++       L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 123 EHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 181

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 182 TGKAAQRMQEALQNSFNDPKLLESGLMSDELRNQSTQTIHR 222


>gi|146182736|ref|XP_001025134.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143751|gb|EAS04889.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 476

 Score = 41.8 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 83/203 (40%), Gaps = 38/203 (18%)

Query: 4   HNSFQEHSETIDLI-----------SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV 52
           H+SF + S   DL+           S+ + + +  +   +     A AG+GKT + V  V
Sbjct: 37  HSSFNDFSLKQDLLRSVKEAGFERPSEVQHQCIPNAIHGKDVLCQAKAGTGKTAVFVLSV 96

Query: 53  LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112
           L  L  +A P + L L HT+    E++ ++          ++  + A    ++      +
Sbjct: 97  LNQLPDDAKPFSCLVLCHTR----ELAFQIKNEFKRLGKFTNFKVKAVYGGVEESVDIHT 152

Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172
             +K  H+L   + TPG          C ++++         +  ++ + +  +  I + 
Sbjct: 153 LKTKKPHIL---VATPGR---------CLSLIK---------AKPSVIETQNIEYFIIDE 191

Query: 173 KKSTLASIMLDNNEELKKAFYEI 195
               L+S  + ++  ++  FYE+
Sbjct: 192 CDRVLSSNKMRSD--VQNIFYEL 212


>gi|126640436|ref|YP_001083420.1| exonuclease V alpha subunit [Acinetobacter baumannii ATCC 17978]
          Length = 516

 Score = 41.8 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E +DL++       L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 52  EHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 110

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 111 TGKAAQRMQEALQNSFNDPKLLESGLMSDELRNQSTQTIHR 151


>gi|77918405|ref|YP_356220.1| hypothetical protein Pcar_0793 [Pelobacter carbinolicus DSM 2380]
 gi|77544488|gb|ABA88050.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 646

 Score = 41.8 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 20  TKSEQLL----ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           T+ +  +    AS+      +   AG+GKT ++ + +  L     +P+ +L LT+T
Sbjct: 155 TEEQARIINLVASEIDEPLHLQGYAGTGKTFLIAKLLEVLESRGVNPNEMLILTYT 210


>gi|195381513|ref|XP_002049493.1| GJ21617 [Drosophila virilis]
 gi|194144290|gb|EDW60686.1| GJ21617 [Drosophila virilis]
          Length = 880

 Score = 41.8 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 17  ISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + Q ++ Q + + P+      V    G+GKT  +V+ +L+L L     S +L    + +A
Sbjct: 292 MEQLQAVQHIVNGPSSLAPYIVFGPPGTGKTTTIVEAILQLRLRQPR-SRILVTAGSNSA 350

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK----ARHLLITILETPGG 130
              ++ R+ E   +   L   ++          +  + D       +R +    L     
Sbjct: 351 CDTIALRICEYFASSERLQAALVERAKESRLVTEDVELDHQLMRLFSRSVYAKGLNAVDP 410

Query: 131 L 131
           L
Sbjct: 411 L 411


>gi|170021857|ref|YP_001726811.1| UvrD/REP helicase [Escherichia coli ATCC 8739]
 gi|169756785|gb|ACA79484.1| UvrD/REP helicase [Escherichia coli ATCC 8739]
          Length = 704

 Score = 41.8 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAA 76
            S++ L   P      V   AG+GKT + + R  R L   LA+     +L  T T+  AA
Sbjct: 242 PSQRKLVESPANGPVRVLGGAGTGKTVVAMHR-ARWLSQRLADKPGKKVLFTTFTRNLAA 300

Query: 77  EMSHRVLEIITAWSHLS------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           ++   +  + T            D  +S ++ +         D  + R            
Sbjct: 301 DIRANLQRLCTREEMARIDVVNIDAWMSDQLKRHGYDFRVVYDSDEGRRKCWNYA----- 355

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF 157
                        +QQ P E  +  +F
Sbjct: 356 -------------LQQAPAELGLPDNF 369


>gi|156056310|ref|XP_001594079.1| hypothetical protein SS1G_05508 [Sclerotinia sclerotiorum 1980]
 gi|154703291|gb|EDO03030.1| hypothetical protein SS1G_05508 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 862

 Score = 41.8 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 16  LISQTKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           L+  +  +Q+         ++  V A AGSGKT  ++      L  +A  +  L L + +
Sbjct: 86  LLPPSPEQQVAIDTLLYTKKNVIVDACAGSGKTTTILH-----LAKSAPGTKFLVLVYNR 140

Query: 73  AAAAEMSHRVLEI 85
               E   RV ++
Sbjct: 141 RLMLETQQRVEDL 153


>gi|73965275|ref|XP_862371.1| PREDICTED: similar to helicase with zinc finger domain isoform 7
           [Canis familiaris]
          Length = 1945

 Score = 41.8 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQET-SRILICTHS 700

Query: 72  KAAA 75
            +AA
Sbjct: 701 NSAA 704


>gi|331665955|ref|ZP_08366849.1| UvrD/REP helicase [Escherichia coli TA143]
 gi|331057006|gb|EGI29000.1| UvrD/REP helicase [Escherichia coli TA143]
          Length = 704

 Score = 41.8 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAA 76
            S++ L   P      V   AG+GKT + + R  R L   LA+     +L  T T+  AA
Sbjct: 242 PSQRKLVESPANGPVRVLGGAGTGKTVVAMHR-ARWLSQRLADKPGKKVLFTTFTRNLAA 300

Query: 77  EMSHRVLEIITAWSHLS------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           ++   +  + T            D  +S ++ +         D  + R            
Sbjct: 301 DIRANLQRLCTREEMARIDVVNIDAWMSDQLKRHGYDFRVVYDSDEGRRKCWNYA----- 355

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF 157
                        +QQ P E  +  +F
Sbjct: 356 -------------LQQAPAELGLPDNF 369


>gi|323142755|ref|ZP_08077470.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
 gi|322417468|gb|EFY08087.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
          Length = 476

 Score = 41.8 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 20 TKSEQLLASD-----PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
          T+ +Q +        P  +  + A AGSGKT  L++     +  +      L L   KA 
Sbjct: 3  TEEQQAVIETSKRMQPQETLKIEACAGSGKTSALIE-----IAKSNPDKRFLYLAFNKAI 57

Query: 75 AAEMSHR 81
            E   R
Sbjct: 58 VEEAKKR 64


>gi|170738605|ref|YP_001767260.1| putative deoxyribonuclease [Methylobacterium sp. 4-46]
 gi|168192879|gb|ACA14826.1| conserved hypothetical protein; putative deoxyribonuclease
          [Methylobacterium sp. 4-46]
          Length = 367

 Score = 41.4 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 16/68 (23%)

Query: 24 QLLASDPTRSAWVSAN----------AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          +  A+    SAW+ A           AG+GKT  L +RV   +         L   +T  
Sbjct: 7  EQEAALRAVSAWLKAGEPRVFRLFGFAGTGKT-TLARRVAEDVEGGV-----LFAAYTGK 60

Query: 74 AAAEMSHR 81
          AA+ M  R
Sbjct: 61 AASVMRQR 68


>gi|226947991|ref|YP_002803082.1| hypothetical protein CLM_0852 [Clostridium botulinum A2 str. Kyoto]
 gi|226841132|gb|ACO83798.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 752

 Score = 41.4 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLC 67
           Q +  +++ ++  ++  V   AGSGKT + + R+  LL        P  ++ 
Sbjct: 209 QREQNKVIRNEEYKNLIVQGPAGSGKTSVALHRIAYLLYKHRDKISPKNIVI 260


>gi|195122540|ref|XP_002005769.1| GI20648 [Drosophila mojavensis]
 gi|193910837|gb|EDW09704.1| GI20648 [Drosophila mojavensis]
          Length = 902

 Score = 41.4 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 17  ISQTKSEQLLASDPTR--SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + Q ++   + + P++     V    G+GKT  +V+ +L+L L     S +L    + +A
Sbjct: 303 MEQLQAVHQIVNGPSKEGPYIVFGPPGTGKTTTIVEAILQLRLRQPR-SRILVTAGSNSA 361

Query: 75  AAEMSHRVLEIITA----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
              ++ R+ +   +     +HL      + +     +  ++     +R +    L +   
Sbjct: 362 CDTIAVRICKYFASNERLQAHLMKRAKESRLVTEDVELKHQLIRLFSRSVYAKGLNSVEP 421

Query: 131 LKVQTIHAFCEA 142
           L +   H+ C  
Sbjct: 422 LLLS--HSNCAK 431


>gi|323351176|ref|ZP_08086832.1| type I site-specific deoxyribonuclease [Streptococcus sanguinis
           VMC66]
 gi|322122400|gb|EFX94111.1| type I site-specific deoxyribonuclease [Streptococcus sanguinis
           VMC66]
          Length = 985

 Score = 41.4 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 29/159 (18%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77
           E +  +   R+  +  +AGSGKT+    L   ++ L          T+L +T        
Sbjct: 279 EDMRVNHTDRNYLIQHSAGSGKTNTIAWLAHSLVSLHDEENQNIVDTVLVVT-------- 330

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              R++        +        + K+   K   SD++ A      I+ T       TIH
Sbjct: 331 --DRIVVDRQLQDAIRSIEHQPGVIKVMDDKATSSDLADALAGNTKIVAT-------TIH 381

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
            F + I +   + A +T+      E++   LI+EA  ST
Sbjct: 382 KFAQ-INKSNWMSAGVTA------EKKFAVLIDEAHSST 413


>gi|297616281|ref|YP_003701440.1| hypothetical protein Slip_0071 [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144118|gb|ADI00875.1| protein of unknown function DUF559 [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 1510

 Score = 41.4 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 11  SETIDLISQTKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
            E I    Q  +EQ+   D         V    G+GKTH +   +  LL       T+L 
Sbjct: 365 PEEILFSKQWNNEQMQIVDRLQRHGGVIVQGPPGTGKTHTIANLIGHLLAQG---KTVLV 421

Query: 68  LTHTKAAAAEMSHRVLEIITAW 89
             HT  A   +  ++ + +   
Sbjct: 422 TAHTSKALRVLRDQIADQLRPL 443


>gi|325673658|ref|ZP_08153349.1| exodeoxyribonuclease V alpha subunit [Rhodococcus equi ATCC 33707]
 gi|325555679|gb|EGD25350.1| exodeoxyribonuclease V alpha subunit [Rhodococcus equi ATCC 33707]
          Length = 614

 Score = 41.4 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 18  SQTKSEQLLASDPTRSAW--VSAN-AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           S     Q +A+    + W  V A   G+GKTH  V RVL LL        +     T  A
Sbjct: 169 SDAPDRQRIAAAVAATHWTSVIAGGPGTGKTHT-VARVLALLARQQPGLRIGLAAPTGKA 227

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
           AA +   V E       L  E+ +  + ++ G +   S   
Sbjct: 228 AARLQESVREQ-AELVGLRSELPAMTLHRMLGWQRGTSRFR 267


>gi|195380591|ref|XP_002049054.1| GJ21375 [Drosophila virilis]
 gi|194143851|gb|EDW60247.1| GJ21375 [Drosophila virilis]
          Length = 674

 Score = 41.4 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLAS-------DPTRSAWVSANAGSGKTHILVQRVLR 54
           ++ + + E    I+    T SEQL A        +P     V    G+GKT  +V+ +L+
Sbjct: 213 LHKSDYFEEFSLINTQIATNSEQLQAVKQIVNGPNPLAPYIVFGPPGTGKTTTIVEAILQ 272

Query: 55  LLLANAHPSTLLCLT 69
           L L    P + + +T
Sbjct: 273 LCL--LRPESHIIVT 285


>gi|296447661|ref|ZP_06889579.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
 gi|296254802|gb|EFH01911.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
          Length = 694

 Score = 41.4 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK--AAAAEMSHRVLE---- 84
           +  A V+ +AG+GK+ + V R +RL  A+     LL  T +   AAA E   R+L     
Sbjct: 237 SGPAHVAGSAGTGKSVVAVHRAVRLARASVQARVLLA-TFSDPLAAALERKVRLLAGADS 295

Query: 85  -IITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGG 130
            +++     S  +++AE+ ++  G +P+ +   +    L    +   G
Sbjct: 296 GLLSRILVASLPVIAAELFELAYGHRPHVATPDRLARALEKATDAAEG 343


>gi|170039626|ref|XP_001847630.1| helicase with zinc finger [Culex quinquefasciatus]
 gi|167863148|gb|EDS26531.1| helicase with zinc finger [Culex quinquefasciatus]
          Length = 2054

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPT-----RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E ++A             +    G+GKT+ L Q + +LLL     S +L  TH+
Sbjct: 868 LNSKQKEAVVAITTPITVALPPILLIGPFGTGKTYTLAQAIKQLLLQPE--SKILICTHS 925

Query: 72  KAAA 75
            +AA
Sbjct: 926 NSAA 929


>gi|330959645|gb|EGH59905.1| putative DNA helicase [Pseudomonas syringae pv. maculicola str.
          ES4326]
          Length = 497

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          +   T+ +  + +   R   V+A AG+GKT  LV         N     +L + +    A
Sbjct: 1  MRQWTEEQYPIITTLARLVKVNAFAGTGKTTTLVG-----YAENHPEEKILYIAYNTEVA 55

Query: 76 AEMSHRVLEIITA 88
          AE   R    +TA
Sbjct: 56 AEARRRFSRNVTA 68


>gi|194016360|ref|ZP_03054974.1| DNA helicase II [Bacillus pumilus ATCC 7061]
 gi|194011833|gb|EDW21401.1| DNA helicase II [Bacillus pumilus ATCC 7061]
          Length = 628

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 83/214 (38%), Gaps = 51/214 (23%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            + +T+DL  +  ++Q+      +   +   AGSGKT IL  R  ++L        +L L
Sbjct: 228 RNIKTMDLHQENLAKQIG----DKHRLIRGVAGSGKTLILATR-AKMLAEQLPNWKILIL 282

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
            +   A   +   + ++I +     D+ L+++  K                         
Sbjct: 283 CY-NVA---LKQNIKQMIHSKFTEPDDFLTSDHRKTP---------------------NL 317

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL-----ASIMLD 183
             +++   H     I ++      I+       E +    IE+ +   L      +I++D
Sbjct: 318 NNIQILNFH---HWIKKEH----GIS-------ELEIDDYIEKIENDALTPVKYDAILID 363

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
             ++ + ++  ++ +  D++ ++L+  ++ +R  
Sbjct: 364 EGQDFEGSWLHLISLCLDQETQSLL--LVEDRAQ 395


>gi|195108479|ref|XP_001998820.1| GI24178 [Drosophila mojavensis]
 gi|193915414|gb|EDW14281.1| GI24178 [Drosophila mojavensis]
          Length = 914

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 22/136 (16%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTK-- 72
           ++Q++   L A+       +    G+GKTH+ V+ V  LL       +  ++ LT+T   
Sbjct: 461 LNQSQRGALGAALRNEFCIIQGPPGTGKTHLSVELVNTLLQNAERLKSGPIVVLTYTNDS 520

Query: 73  ------AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM--SKARHLLITI 124
                  AA        +   +     ++    EI K   +   +  +   + + L   +
Sbjct: 521 LDKFLLKAA--------QYTDSIVRFGNQSRLPEIEKYNVRLMTEDHLVPPRLKRLWWLV 572

Query: 125 LETPGGL--KVQTIHA 138
                    ++QT+HA
Sbjct: 573 KCEYKEQFERLQTLHA 588


>gi|169797387|ref|YP_001715180.1| exonuclease V, alpha subunit [Acinetobacter baumannii AYE]
 gi|213155798|ref|YP_002317843.1| exonuclease V alpha subunit [Acinetobacter baumannii AB0057]
 gi|215484827|ref|YP_002327062.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           AB307-0294]
 gi|294837426|ref|ZP_06782109.1| exonuclease V, alpha subunit [Acinetobacter sp. 6013113]
 gi|294858013|ref|ZP_06795782.1| exonuclease V, alpha subunit [Acinetobacter sp. 6013150]
 gi|301345351|ref|ZP_07226092.1| exonuclease V, alpha subunit [Acinetobacter baumannii AB056]
 gi|301512606|ref|ZP_07237843.1| exonuclease V, alpha subunit [Acinetobacter baumannii AB058]
 gi|301594569|ref|ZP_07239577.1| exonuclease V, alpha subunit [Acinetobacter baumannii AB059]
 gi|169150314|emb|CAM88211.1| exonuclease V, alpha subunit [Acinetobacter baumannii AYE]
 gi|213054958|gb|ACJ39860.1| exonuclease V alpha subunit [Acinetobacter baumannii AB0057]
 gi|213986255|gb|ACJ56554.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           AB307-0294]
          Length = 583

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E +DL++       L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 119 EHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 177

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 178 TGKAAQRMQEALQNSFNDPKLLESGLMSDELRNQSTQTIHR 218


>gi|126434807|ref|YP_001070498.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS]
 gi|126234607|gb|ABN98007.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS]
          Length = 905

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 76/224 (33%), Gaps = 53/224 (23%)

Query: 30  PTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLE 84
           P     +  +AGSGKT+    L  R+  L      P   +++ +T           R   
Sbjct: 179 PGHRYLIQHSAGSGKTNSISWLAHRLSVLHDDANKPVFDSVIVIT----------DR--- 225

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMS----KARHLLITILETPGGLKVQTIHAFC 140
                 ++ D  L   I +I       + +         LL   L+    + + TI    
Sbjct: 226 ------NVLDAQLQEAIRQIDKTPGVVAHIDGLGGSKSQLLADALQDGTKIIIVTI---- 275

Query: 141 EAIMQQFPLEANITSH--------FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
               Q FP   ++           FAI  +E       EA K   A++     ++     
Sbjct: 276 ----QTFPYALDLIQGQASLKGKSFAIIADEAHSSQAGEASKRLKAALAATELDD----- 326

Query: 193 YEILEISNDEDIETLI-SDIISNRTALKLIFFFFSYLWRRKIIE 235
              LE     D E ++ ++I +   +  L FF F+   + K +E
Sbjct: 327 ---LEDGGTVDAEDVLAAEIAARAESTNLSFFAFTATPKAKTLE 367


>gi|22297855|ref|NP_681102.1| hypothetical protein tll0312 [Thermosynechococcus elongatus BP-1]
 gi|22294032|dbj|BAC07864.1| tll0312 [Thermosynechococcus elongatus BP-1]
          Length = 774

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 40/157 (25%)

Query: 16  LISQTKSEQLLASDPTRSAW-VSANAGSGKTHIL-VQRVLRLLLANAHPST-LLCLTHTK 72
           L+S  +  Q   S+       VSA  G+GK+H + V   + +     H    L+ +T+++
Sbjct: 13  LLSTLRPGQREISEWQGGMLAVSAVPGAGKSHGMAVGAAIAIAREKLHQQRQLVVVTYSR 72

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +AAA +  R+ + +                                           G  
Sbjct: 73  SAAANIKVRIRQYLREMGLPR-----------------------------------NGFS 97

Query: 133 VQTIHAFCEAIMQQFPLEANITSHFA-IADEEQSKKL 168
           VQT+H+    I    P  A + S    +  E + ++L
Sbjct: 98  VQTLHSLALKIATSHP-TAGLRSRGENLMSEHEQRRL 133


>gi|229526764|ref|ZP_04416168.1| DNA helicase II [Vibrio cholerae bv. albensis VL426]
 gi|229336922|gb|EEO01940.1| DNA helicase II [Vibrio cholerae bv. albensis VL426]
          Length = 618

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP--- 62
           + Q   ET++ +           +  +   + A AG+GKT+ L++ +  ++   A+    
Sbjct: 40  AAQASVETLESL-------RSCIEQGQCFRLEAGAGAGKTYSLIESLKYVISLRANEFAI 92

Query: 63  --STLLCLTHTKAAAAEMSHR 81
               +  +T+T  A  E+  R
Sbjct: 93  SGKQVASITYTNVAKDEIKAR 113


>gi|78223099|ref|YP_384846.1| DNA helicase/exodeoxyribonuclease V subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78194354|gb|ABB32121.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Geobacter
           metallireducens GS-15]
          Length = 594

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 19  QTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-TKAAA 75
           +T  +++ A+   RS    +S   G+GKT  +V+ +  LL  +      + LT  T  AA
Sbjct: 137 ETDWQRIAAAAALRSGFTVISGGPGTGKTSTVVKIIALLLEQSGDDGLGIALTAPTGKAA 196

Query: 76  AEMSHRVLEIITAWSHLSD 94
           A +   +       + L+ 
Sbjct: 197 ARLKDAIRGAREGLAGLTP 215


>gi|88706413|ref|ZP_01104118.1| exodeoxyribonuclease V, alpha subunit [Congregibacter litoralis
           KT71]
 gi|88699349|gb|EAQ96463.1| exodeoxyribonuclease V, alpha subunit [Congregibacter litoralis
           KT71]
          Length = 716

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 18  SQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + T+ +Q  A     + +  +   AG GKT +L     +L          L LT    AA
Sbjct: 320 NLTEEQQTAALVFLENRFGVLLGGAGMGKTTLLRYVYSQLPAEEVIVQ--LALT--NKAA 375

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             M         + +         ++        +++ M  A  +    L  P    
Sbjct: 376 NRMRESTGRYACSIAAFLGRADDNQLPSYFSVFVDEASMLDAIMIYRIFLAMPEDAN 432


>gi|296202966|ref|XP_002806912.1| PREDICTED: LOW QUALITY PROTEIN: probable helicase with zinc finger
           domain-like [Callithrix jacchus]
          Length = 1877

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 576 LNAKQKEAXLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQET-SRILICTHS 634

Query: 72  KAAA 75
            +AA
Sbjct: 635 NSAA 638


>gi|284929239|ref|YP_003421761.1| superfamily I DNA/RNA helicase [cyanobacterium UCYN-A]
 gi|284809683|gb|ADB95380.1| DNA/RNA helicase, superfamily I [cyanobacterium UCYN-A]
          Length = 785

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 47/159 (29%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKA 73
           L +    ++ LA   +    V+A  G+GK+H L      L+  N       L+ +T+T++
Sbjct: 24  LTNLRYEQKQLAHWKSGKMSVTAVPGAGKSHSLATTAAILIARNNLNINKQLVIVTYTRS 83

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA  M                                 +  +K +  LI +  +  G  V
Sbjct: 84  AA--M---------------------------------AIEAKIKQHLIDLDISQDGFMV 108

Query: 134 QTIHAFCEAIMQQFPL----------EANITSHFAIADE 162
            T+H     I+   P             N+T +  I + 
Sbjct: 109 NTLHGLALQIINNHPNFSKLNLTNSTLINLTPNHKIIEN 147


>gi|56130637|ref|YP_145540.1| putative DNA helicase [Ralstonia metallidurans CH34]
 gi|56068628|emb|CAI11192.1| putative DNA helicase [Cupriavidus metallidurans CH34]
          Length = 650

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72
          +++   T  +    +   R   V A  G+GKT  L +  L        P   +L LT+TK
Sbjct: 4  VEMSKATHEQLTAINSAVRRLVVQACPGAGKTFTLREYAL------VRPSERILYLTYTK 57


>gi|195444274|ref|XP_002069793.1| GK11386 [Drosophila willistoni]
 gi|194165878|gb|EDW80779.1| GK11386 [Drosophila willistoni]
          Length = 863

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           S + +S+    +   + +Q        +    +    G+GKTH+ VQ V  L+  +    
Sbjct: 448 SLKVNSKLSKELPLNEMQQKAIQSVLTNEFCLIQGPPGTGKTHVSVQLVKTLIQNSKQLK 507

Query: 64  T--LLCLTHTK 72
           T  ++ LT+T 
Sbjct: 508 TGPIIVLTYTN 518


>gi|15894313|ref|NP_347662.1| superfamily I DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023937|gb|AAK79002.1|AE007618_5 Superfamily I DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|325508441|gb|ADZ20077.1| Superfamily I DNA helicase [Clostridium acetobutylicum EA 2018]
          Length = 763

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
              S+  D+++  + EQ       ++    V  +AGSGKT + + R+  L+
Sbjct: 194 NVSSKLKDVVATIQKEQNDIIRSEKNSALVVQGSAGSGKTTVALHRLAYLI 244


>gi|229176477|ref|ZP_04303910.1| Helicase [Bacillus cereus MM3]
 gi|228607015|gb|EEK64404.1| Helicase [Bacillus cereus MM3]
          Length = 769

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           AG+GKT+ LV  + RL      P+  +  T+T  A++    R+ E+   +     + L
Sbjct: 407 AGTGKTYTLVNLLNRL---KPDPNKTIVCTYTGKASS----RIRELFREYDLQDYKAL 457


>gi|206601814|gb|EDZ38297.1| DNA helicase [Leptospirillum sp. Group II '5-way CG']
          Length = 1602

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 16  LISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           L  +   EQL      D + +  V    G+GKTH +   +  LL       ++L    T 
Sbjct: 373 LAKEANEEQLQIIRRLDHSGAVIVQGPPGTGKTHTIGNLIGHLLAQG---KSILVTAQTA 429

Query: 73  AAAAEMSHR---VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            A   +  +   VL+ +      SD+    ++         +     A  LL    +
Sbjct: 430 KALRVVRDKVPAVLQPLAVSVLGSDQNARKQLESSISSITERLTGDTAESLLQKAKD 486


>gi|195024413|ref|XP_001985870.1| GH21048 [Drosophila grimshawi]
 gi|193901870|gb|EDW00737.1| GH21048 [Drosophila grimshawi]
          Length = 1621

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 13/115 (11%)

Query: 13  TIDLISQTKSEQLLAS-------DPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPST 64
            I+   +T  EQLLA        +P     V    G GKT  +V+ +L+L +    H   
Sbjct: 225 LINKSIETNPEQLLAVKQIVAGPNPRAPYIVFGPPGCGKTTTIVEAILQLYIQKGCH--- 281

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           +L   ++ +A   ++ +++E I   +      L   +T +  +  + + + KA  
Sbjct: 282 ILVTANSNSACDTIALKIIECIEKDNRFLQ--LPNGLTHVLMRLVSYTRLRKAAK 334


>gi|257415495|ref|ZP_05592489.1| superfamily I DNA and RNA helicase [Enterococcus faecalis AR01/DG]
 gi|257157323|gb|EEU87283.1| superfamily I DNA and RNA helicase [Enterococcus faecalis ARO1/DG]
          Length = 740

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|227517853|ref|ZP_03947902.1| helicase [Enterococcus faecalis TX0104]
 gi|227074696|gb|EEI12659.1| helicase [Enterococcus faecalis TX0104]
          Length = 740

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|257792565|ref|YP_003183171.1| Superfamily I DNA and RNA helicase-like protein [Eggerthella lenta
           DSM 2243]
 gi|325832723|ref|ZP_08165486.1| conserved domain protein [Eggerthella sp. HGA1]
 gi|257476462|gb|ACV56782.1| Superfamily I DNA and RNA helicase-like protein [Eggerthella lenta
           DSM 2243]
 gi|325485862|gb|EGC88323.1| conserved domain protein [Eggerthella sp. HGA1]
          Length = 716

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLT 69
           Q +  Q++      +  V+  AGSGKT +L+QR+  L      +  PS +  +T
Sbjct: 223 QKEQNQVIRHADAPTLLVNGIAGSGKTSVLMQRIAYLFYQQRESLDPSEVFLIT 276


>gi|195501769|ref|XP_002097935.1| GE24207 [Drosophila yakuba]
 gi|194184036|gb|EDW97647.1| GE24207 [Drosophila yakuba]
          Length = 1487

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 91/238 (38%), Gaps = 31/238 (13%)

Query: 18   SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 816  TPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALNQ 874

Query: 78   MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +  +++ +     HL      +E L  E    +  + N   ++K   LL  + +    L 
Sbjct: 875  LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLSQVQKLQEALG 933

Query: 133  VQ-----TIHAFCEAIMQQFPLEANITSHFA-----IA---DEEQSKKLIEEAKKST-LA 178
            V      T    CE     +    N+ + +      IA   ++  ++KL  E ++     
Sbjct: 934  VSGDNAYT----CET--AGYFYLYNVMARWEKFQSQIAVHKEDTDAEKLRAEFEREFPFG 987

Query: 179  SIMLDNNEELKK--AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                D  + L K  ++ E+++I+        ISDI +     +      + L R K +
Sbjct: 988  KFFADAPQPLFKGASYEELMDIA--CSNFRYISDIFNELEEFRAFELLRTGLDRSKYL 1043


>gi|148368939|ref|YP_001257069.1| hel-2 [Spodoptera litura granulovirus]
 gi|147883452|gb|ABQ52061.1| hel-2 [Spodoptera litura granulovirus]
          Length = 437

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
          ++  +  D ++ TK             +VS +AG+GK+ +L     R L ++    T+  
Sbjct: 31 KQQQQLFDYVTLTKE--------FGPIFVSGSAGTGKSALL-----RALQSHWKNKTIWV 77

Query: 68 LTHTKAAAA 76
           T+T  AA 
Sbjct: 78 TTYTNLAAR 86


>gi|123447558|ref|XP_001312517.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121894367|gb|EAX99587.1| hypothetical protein TVAG_427510 [Trichomonas vaginalis G3]
          Length = 1679

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 13/109 (11%)

Query: 35  WVSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHTKAAAAEM---------SHRVLE 84
           +VS  AGSGKT++ V+ V L +L     P  +L +T  K AA E+           ++L 
Sbjct: 464 FVSGCAGSGKTYLAVKSVFLYVLSHRDSP--ILIVTQKKHAADEISKSLLKIIPKEKILR 521

Query: 85  IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLK 132
                + + D+I S     ++  +    S     +  L   LE+     
Sbjct: 522 HAAISNKIDDDIQSISFKNELLSESSYNSAYKSLKASLNNALESIQEFN 570


>gi|168244017|ref|ZP_02668949.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450327|ref|YP_002048515.1| UvrD/REP helicase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194408631|gb|ACF68850.1| UvrD/REP helicase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337003|gb|EDZ23767.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 705

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAA 76
            S++ L   P      V   AG+GKT + + R  R L   LA+     +L  T T+  AA
Sbjct: 243 PSQRKLVESPANGPVRVLGGAGTGKTVVAMHR-ARWLSQRLADKPGKKVLFTTFTRNLAA 301

Query: 77  EMSHRVLEIITAWSHLS------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           ++   +  + +            D  +S ++ +         D  + R            
Sbjct: 302 DIRANLQRLCSREEMARIEVVNIDAWMSEQLKRHGYDFRVVYDSDEGRRKCWNYA----- 356

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF 157
                        +QQ P E  +  +F
Sbjct: 357 -------------LQQVPAELGLPENF 370


>gi|115373950|ref|ZP_01461241.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310817911|ref|YP_003950269.1| DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115369078|gb|EAU68022.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390983|gb|ADO68442.1| DNA helicase, UvrD/REP type [Stigmatella aurantiaca DW4/3-1]
          Length = 700

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 14  IDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRL---LLANAHPSTLLCL 68
            D+ +Q  +EQ  A      +   V  +AGSGKT + + R+ +L   L A + PS +  +
Sbjct: 228 FDITAQLDAEQFEALQTGVDKPLLVLGSAGSGKTTVALHRLAKLTFDLRAASAPSRMKVV 287


>gi|319650253|ref|ZP_08004399.1| superfamily I DNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317398084|gb|EFV78776.1| superfamily I DNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 755

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANA 60
           S    +   ++IS  + EQ  ++ +D  +   V   AGSGKT I + R+   +     N 
Sbjct: 185 SKSSSNRLTEIISTIQEEQNKIIRADLNKPIIVQGAAGSGKTTIALHRISYFIYQYKENF 244

Query: 61  HPSTLLCL 68
            P  L+ L
Sbjct: 245 APEQLMIL 252


>gi|147846001|emb|CAN84170.1| hypothetical protein VITISV_028525 [Vitis vinifera]
          Length = 705

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           ++  + + +L        A +    G+GKT  +V  V  LL+  A   ++L  ++T +A
Sbjct: 255 LNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGA---SILLTSYTNSA 310


>gi|50119561|ref|YP_048728.1| hypothetical protein ECA0611 [Pectobacterium atrosepticum
          SCRI1043]
 gi|49610087|emb|CAG73527.1| conserved hypothetical protein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 486

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKA 73
          S T  +  + +   R   V+A AG+GKT  LV R  +     A+P   +L L + +A
Sbjct: 4  SDTPEQSAVINWKGRHLVVNAFAGTGKTTTLV-RYAQ-----ANPDRRMLYLAYNRA 54


>gi|89097687|ref|ZP_01170575.1| Superfamily I DNA helicase [Bacillus sp. NRRL B-14911]
 gi|89087546|gb|EAR66659.1| Superfamily I DNA helicase [Bacillus sp. NRRL B-14911]
          Length = 752

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL---LANA 60
           +    S   ++IS  + EQ     +D  +   V   AGSGKT I + R+   +     N 
Sbjct: 184 AKSSSSRLTEIISTIQEEQNRIIRADLNKPIIVQGAAGSGKTTIALHRISYFIYQYKENF 243

Query: 61  HPSTLLCL 68
            P  L+ L
Sbjct: 244 LPEQLMIL 251


>gi|327413045|emb|CAX68074.1| putative DNA helicase [Salmonella enterica subsp. VII]
          Length = 497

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           T  +  + +       VSA AGSGKT  L +R             +L + + +A
Sbjct: 5  DTPEQAAIIAWKGTRLVVSACAGSGKTTTL-RRFA----EENPTERMLYVAYNRA 54


>gi|198282388|ref|YP_002218709.1| P-type conjugative transfer ATPase TrbB [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198246909|gb|ACH82502.1| P-type conjugative transfer ATPase TrbB [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 322

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 25/186 (13%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEI 85
           A    ++  VS  AGSGKT  L   ++  +   +     ++ +  T+    E+      +
Sbjct: 149 AVLSRKNILVSGGAGSGKT-TLSNAIIDRISKLSDIGTRIVIIEDTR----ELQCTAPNV 203

Query: 86  ITAWSHLSDEILSAEITKIQGK-KPNK----SDMSKARHLLITILETPGGLKVQTIHAFC 140
           +   +     I    + K+  + +P++        KA   L+    T     + T+HA  
Sbjct: 204 VQFLTDDDAGIDMTRLLKLTLRYRPDRILVGEVRDKAALALLKAWNTGHPGGIATLHANN 263

Query: 141 --EAIMQ--QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
              A+++  Q   EA + +          + LI EA    L  I  D+N    +    IL
Sbjct: 264 PEAALLRLDQLCQEAGVPA---------QQTLIHEAVDIVL-QIARDSNHPAGRRISAIL 313

Query: 197 EISNDE 202
           ++ + E
Sbjct: 314 DVKSGE 319


>gi|153003734|ref|YP_001378059.1| superfamily I DNA/RNA helicase-like protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027307|gb|ABS25075.1| superfamily I DNA and RNA helicase-like protein [Anaeromyxobacter
           sp. Fw109-5]
          Length = 703

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCL 68
           I  +   +  + ++S P R   V  +AGSGKT + + R+ R+   +     PS +  +
Sbjct: 232 ITALLDPEQFEAVSSPPDRPLLVIGSAGSGKTTVALHRLARIAFEDPRRYPPSRMQVV 289


>gi|227555044|ref|ZP_03985091.1| helicase [Enterococcus faecalis HH22]
 gi|227175831|gb|EEI56803.1| helicase [Enterococcus faecalis HH22]
 gi|315574154|gb|EFU86345.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
 gi|315581703|gb|EFU93894.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
          Length = 740

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|122692291|ref|NP_001073679.1| F-box only protein 18 [Gallus gallus]
 gi|119873802|gb|ABM05617.1| F-box helicase [Gallus gallus]
          Length = 1012

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 16/78 (20%)

Query: 11  SETIDLISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILV---QRVLRLLLANAHPST 64
           S ++  +  T  +Q + +   +  +   + A AG+GKT  LV   ++   L        +
Sbjct: 418 SSSLSEVKLTHEQQRILNHKIERGQIVKIMAFAGTGKTSTLVKYAEKFADL--------S 469

Query: 65  LLCLTHTKAAAAEMSHRV 82
            L +T    A AE   R+
Sbjct: 470 FLYVTF-NKAVAE-RGRL 485


>gi|108762196|ref|YP_633652.1| hypothetical protein MXAN_5509 [Myxococcus xanthus DK 1622]
 gi|108466076|gb|ABF91261.1| conserved domain protein [Myxococcus xanthus DK 1622]
          Length = 1214

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA 88
             G+GKT  +   + R L   A P   +L +  T  AA E+  RV  ++  
Sbjct: 316 PPGTGKTTAVADLIARALR--AFPGERILAVAPTNRAADELVLRVSALLER 364



 Score = 39.1 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 38/162 (23%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
           AGSGKT++L   V R LL ++     + ++    A               + L D++L  
Sbjct: 816 AGSGKTYVLAHWVARYLLEHSEAQ--VLVSFFNRA--------------LAPLVDKLLVE 859

Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159
            + +  G+        + R L   +     G             +++   E+     F  
Sbjct: 860 ALAQRAGRL-------RVRELRARVTVRHVGA------------LRRHAPES-FDGVF-- 897

Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201
            DE Q       A    L       +    + F   ++ S +
Sbjct: 898 VDEAQDMDAKALAMLHALVRPDTLPDGREVRCFQLFMDDSQN 939


>gi|315149693|gb|EFT93709.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|190571819|ref|YP_001966370.1| helicase [Bacillus thuringiensis serovar tenebrionis]
 gi|86372220|gb|ABC95166.1| Helicase [Bacillus thuringiensis serovar tenebrionis]
          Length = 767

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           AG+GKT+ LV  + RL      P+  +  T+T  A++    R+ E+   +     + L
Sbjct: 407 AGTGKTYTLVNLLNRL---KPDPNKTIVCTYTGKASS----RIRELFREYDLQDYKSL 457


>gi|317488857|ref|ZP_07947387.1| hypothetical protein HMPREF1023_01086 [Eggerthella sp. 1_3_56FAA]
 gi|316911931|gb|EFV33510.1| hypothetical protein HMPREF1023_01086 [Eggerthella sp. 1_3_56FAA]
          Length = 716

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLT 69
           Q +  Q++      +  V+  AGSGKT +L+QR+  L      +  PS +  +T
Sbjct: 223 QKEQNQVIRHADAPTLLVNGIAGSGKTSVLMQRIAYLFYQQRESLDPSEVFLIT 276


>gi|315148090|gb|EFT92106.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|163932141|ref|YP_001642333.1| hypothetical protein pGR7_02 [Acetobacter pasteurianus]
 gi|163644017|emb|CAP58436.1| hypothetical protein [Acetobacter pasteurianus]
          Length = 437

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           AG+GKT+ LV  + RL      P+  +  T+T  A++    R+ E+   +     + L
Sbjct: 77  AGTGKTYTLVNLLNRL---KPDPNKTIVCTYTGKASS----RIRELFREYDLQDYKSL 127


>gi|322836796|ref|YP_004210710.1| helicase UvrD/REP [Acidobacterium sp. MP5ACTX9]
 gi|321165883|gb|ADW71583.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 574

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQR---VLRLLLANAHPSTLLCLTHTKAA 74
           ++ +  +  R   V A AGSGKT   V+R   +   L        +  L+ +  A
Sbjct: 7  EQKAIILEKLRPLCVIACAGSGKTFTAVRRMDTICSFLPQRR--DNVALLSFSNVA 60


>gi|255525954|ref|ZP_05392880.1| superfamily I DNA helicase [Clostridium carboxidivorans P7]
 gi|296188676|ref|ZP_06857064.1| hypothetical protein CLCAR_4212 [Clostridium carboxidivorans P7]
 gi|255510373|gb|EET86687.1| superfamily I DNA helicase [Clostridium carboxidivorans P7]
 gi|296046940|gb|EFG86386.1| hypothetical protein CLCAR_4212 [Clostridium carboxidivorans P7]
          Length = 762

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 10  HSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLA---NAHPST 64
            ++  D+++  + EQ       ++    V  +AGSGKT + + R+  L+           
Sbjct: 195 SNKLKDVVATIQKEQNDIIRAEKNTALIVQGSAGSGKTTVALHRLAYLIYKYNGKLKGED 254

Query: 65  LLCL 68
           +L +
Sbjct: 255 ILVV 258


>gi|296138859|ref|YP_003646102.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026993|gb|ADG77763.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
          Length = 1094

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 47/181 (25%)

Query: 39  NAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA----AEMSHRVLEIITAWSHLS 93
             G+GKT  L+   +  L      P ++L LT +K +A     E+S RVL          
Sbjct: 61  GPGTGKTSALIDIAVAKLTDPFVEPESVLILTGSKRSAVALRRELSARVL---------- 110

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                             +D  +A       +   G   V+T+H+   A+++     A  
Sbjct: 111 ------------------ADRGRAG------VHASGEPLVRTVHSLAFAVLRLQAAHAGA 146

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
                +    +   ++ E  +  +        E L+ A                + D+ +
Sbjct: 147 PP-PRLITGSEQDAVVRELLRGHVDDGGAFWPERLRPALVT-------GGFAGALRDLFA 198

Query: 214 N 214
            
Sbjct: 199 Q 199


>gi|19704284|ref|NP_603846.1| DNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714520|gb|AAL95145.1| DNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 1425

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 9/123 (7%)

Query: 16  LISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              +T +EQ+       S     V    G+GKTH +   +   L        +L  + T+
Sbjct: 291 FTKETNNEQVEIIKNIYSHKAVVVQGPPGTGKTHTIANLLGHFLAEG---KNVLITSQTR 347

Query: 73  AAAAEMSHRVLEIITAW---SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A   +  ++   I          D        +   +K    ++ K ++    I     
Sbjct: 348 KALEVLKEKIPNEIQDLCISMLDDDSSDLGNSVESISEKLGYLNLEKLKNEYEEIERNRN 407

Query: 130 GLK 132
            LK
Sbjct: 408 DLK 410


>gi|296327281|ref|ZP_06869833.1| DNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155531|gb|EFG96296.1| DNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 1475

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 9/123 (7%)

Query: 16  LISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              +T +EQ+       S     V    G+GKTH +   +   L        +L  + T+
Sbjct: 341 FTKETNNEQVEIIKNIYSHKAVVVQGPPGTGKTHTIANLLGHFLAEG---KNVLITSQTR 397

Query: 73  AAAAEMSHRVLEIITAW---SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A   +  ++   I          D        +   +K    ++ K ++    I     
Sbjct: 398 KALEVLKEKIPNEIQDLCISMLDDDSSDLGNSVESISEKLGYLNLEKLKNEYEEIERNRN 457

Query: 130 GLK 132
            LK
Sbjct: 458 DLK 460


>gi|146163349|ref|XP_001011272.2| hypothetical protein TTHERM_00146330 [Tetrahymena thermophila]
 gi|146146126|gb|EAR91027.2| hypothetical protein TTHERM_00146330 [Tetrahymena thermophila
           SB210]
          Length = 1186

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 23/130 (17%)

Query: 17  ISQTKSEQLLASDPTRS---AWVSANAGSGKTHI---LVQRVLRLLLANAHPSTLLCLTH 70
           I+Q    QL A   + S   + +    G+GKT     LV  +   +  N     +L    
Sbjct: 747 IAQLNQSQLQAIQSSLSKNISLIQGPPGTGKTETAAQLVLEIWYKINKNQQNEKILVCAP 806

Query: 71  TKAAAAEMSHRV----------------LEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
           +  AA  +S R+                 + +       D +L   + K +G     S +
Sbjct: 807 SNLAADNISDRIHAQNREIKVIRIVSQARQRVKVSYQFQDIVLHKVLKK-EGFFNKNSVL 865

Query: 115 SKARHLLITI 124
            +A+ L+   
Sbjct: 866 KRAKQLIENA 875


>gi|150017577|ref|YP_001309831.1| ATP-dependent DNA helicase replicase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904042|gb|ABR34875.1| ATP-dependent DNA helicase replicase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 745

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLC 67
           Q +  +++ ++  R+  V   AGSGKT + + R+  LL  +     P  ++ 
Sbjct: 211 QREQNKVIRNEEYRNLIVQGPAGSGKTSVALHRIAYLLYKHRDKITPKNIVI 262


>gi|315173441|gb|EFU17458.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|315029803|gb|EFT41735.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|297273445|ref|XP_002808181.1| PREDICTED: LOW QUALITY PROTEIN: probable helicase with zinc finger
           domain-like [Macaca mulatta]
          Length = 1954

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 655 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQET-SRILICTHS 713

Query: 72  KAAA 75
            +AA
Sbjct: 714 NSAA 717


>gi|295113878|emb|CBL32515.1| Superfamily I DNA and RNA helicases [Enterococcus sp. 7L76]
          Length = 732

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 190 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 249

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 250 QHRAEITADNILLLSPNSTF 269


>gi|257086269|ref|ZP_05580630.1| superfamily I DNA and RNA helicase [Enterococcus faecalis D6]
 gi|256994299|gb|EEU81601.1| superfamily I DNA and RNA helicase [Enterococcus faecalis D6]
 gi|315027118|gb|EFT39050.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|257083844|ref|ZP_05578205.1| superfamily I DNA and RNA helicase [Enterococcus faecalis Fly1]
 gi|256991874|gb|EEU79176.1| superfamily I DNA and RNA helicase [Enterococcus faecalis Fly1]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|256964247|ref|ZP_05568418.1| superfamily I DNA and RNA helicase [Enterococcus faecalis HIP11704]
 gi|307271933|ref|ZP_07553201.1| hypothetical protein HMPREF9514_00682 [Enterococcus faecalis
           TX0855]
 gi|256954743|gb|EEU71375.1| superfamily I DNA and RNA helicase [Enterococcus faecalis HIP11704]
 gi|306511439|gb|EFM80441.1| hypothetical protein HMPREF9514_00682 [Enterococcus faecalis
           TX0855]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|219518130|gb|AAI44084.1| HELZ protein [Homo sapiens]
          Length = 1943

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQET-SRILICTHS 700

Query: 72  KAAA 75
            +AA
Sbjct: 701 NSAA 704


>gi|149183524|ref|ZP_01861950.1| Superfamily I DNA helicase [Bacillus sp. SG-1]
 gi|148848770|gb|EDL62994.1| Superfamily I DNA helicase [Bacillus sp. SG-1]
          Length = 756

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL---LANA 60
           S    +   ++IS  + EQ     +D  +   V   AGSGKT I + R+   +     + 
Sbjct: 186 SKSSSNRLTEIISTIQEEQNRIIRADLNKPIIVQGAAGSGKTTIALHRISYFIYNYKQHF 245

Query: 61  HPSTLLCL 68
            P  L+ L
Sbjct: 246 DPRQLMIL 253


>gi|257081176|ref|ZP_05575537.1| superfamily I DNA and RNA helicase [Enterococcus faecalis E1Sol]
 gi|256989206|gb|EEU76508.1| superfamily I DNA and RNA helicase [Enterococcus faecalis E1Sol]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|256960059|ref|ZP_05564230.1| superfamily I DNA and RNA helicase [Enterococcus faecalis Merz96]
 gi|293383811|ref|ZP_06629718.1| ATP-dependent DNA helicase [Enterococcus faecalis R712]
 gi|293388713|ref|ZP_06633206.1| ATP-dependent DNA helicase [Enterococcus faecalis S613]
 gi|312906973|ref|ZP_07765969.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|312978770|ref|ZP_07790497.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|256950555|gb|EEU67187.1| superfamily I DNA and RNA helicase [Enterococcus faecalis Merz96]
 gi|291078887|gb|EFE16251.1| ATP-dependent DNA helicase [Enterococcus faecalis R712]
 gi|291081870|gb|EFE18833.1| ATP-dependent DNA helicase [Enterococcus faecalis S613]
 gi|310626958|gb|EFQ10241.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|311288477|gb|EFQ67033.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|76802113|ref|YP_327121.1| helicase [Natronomonas pharaonis DSM 2160]
 gi|76557978|emb|CAI49563.1| probable helicase [Natronomonas pharaonis DSM 2160]
          Length = 883

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           +H   ID           A      A +    G+GKT+ L Q V  L+        +L  
Sbjct: 504 DHRPIIDNNESQNEAVNRALAAEDFALIHGPPGTGKTYTLAQTVQALVARG---DRVLLS 560

Query: 69  THTKAA 74
             T  A
Sbjct: 561 AFTNRA 566


>gi|7485995|pir||T00740 hypothetical protein F22O13.35 - Arabidopsis thaliana
          Length = 814

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++  + + +L        A +    G+GKT  +V  V  LL+     S++L  ++T +A 
Sbjct: 424 LNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRG---SSILLASYTNSAV 480

Query: 76  AEMSHRVL-EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
             +  ++  + I       DE +  E+ +      N   +   +  L  +
Sbjct: 481 DNLLIKLKAQGIEFLRIGRDEAVHEEVRESCFSAMNMCSVEDIKKKLDQV 530


>gi|315172035|gb|EFU16052.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|315165207|gb|EFU09224.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|307275350|ref|ZP_07556493.1| hypothetical protein HMPREF9521_00977 [Enterococcus faecalis
           TX2134]
 gi|306507984|gb|EFM77111.1| hypothetical protein HMPREF9521_00977 [Enterococcus faecalis
           TX2134]
 gi|327534513|gb|AEA93347.1| ATP-dependent DNA helicase [Enterococcus faecalis OG1RF]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|307286741|ref|ZP_07566827.1| hypothetical protein HMPREF9505_00284 [Enterococcus faecalis
           TX0109]
 gi|306502219|gb|EFM71503.1| hypothetical protein HMPREF9505_00284 [Enterococcus faecalis
           TX0109]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|298245528|ref|ZP_06969334.1| DNA replication factor Dna2 [Ktedonobacter racemifer DSM 44963]
 gi|297553009|gb|EFH86874.1| DNA replication factor Dna2 [Ktedonobacter racemifer DSM 44963]
          Length = 1067

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 10/112 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           D  ++       A        V    G+GKT ++ + V RL         +L    T  A
Sbjct: 606 DFNAEQNLAVERALQMQDYLLVHGPPGTGKTSVIAEIVKRLTQQG---QRVLLAAFTNQA 662

Query: 75  AAEMSHRVLE-------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
              +  R+          +     +++ +    +  +  + P+   +    H
Sbjct: 663 VDNILLRLEREGFDTYLRLGHERSVAEGVRPHLLKGLVDESPHPEAVHDLLH 714


>gi|257077817|ref|ZP_05572178.1| superfamily I DNA/RNA helicase [Enterococcus faecalis JH1]
 gi|256985847|gb|EEU73149.1| superfamily I DNA/RNA helicase [Enterococcus faecalis JH1]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|256761687|ref|ZP_05502267.1| superfamily I DNA and RNA helicase [Enterococcus faecalis T3]
 gi|256682938|gb|EEU22633.1| superfamily I DNA and RNA helicase [Enterococcus faecalis T3]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|229546778|ref|ZP_04435503.1| helicase [Enterococcus faecalis TX1322]
 gi|307290949|ref|ZP_07570839.1| hypothetical protein HMPREF9509_01258 [Enterococcus faecalis
           TX0411]
 gi|229308127|gb|EEN74114.1| helicase [Enterococcus faecalis TX1322]
 gi|306498019|gb|EFM67546.1| hypothetical protein HMPREF9509_01258 [Enterococcus faecalis
           TX0411]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|29375517|ref|NP_814671.1| hypothetical protein EF0933 [Enterococcus faecalis V583]
 gi|29342977|gb|AAO80741.1| conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 732

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 190 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 249

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 250 QHRAEITADNILLLSPNSTF 269


>gi|315125367|ref|YP_004067370.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas sp. SM9913]
 gi|315013880|gb|ADT67218.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas sp. SM9913]
          Length = 610

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%)

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
           + R L     +   GL V T H     I+++          F++ D++ + +L+ +  + 
Sbjct: 2   RERVLQTLGKQESKGLWVSTFHTLGLEIIKKELKTLGFKPGFSLFDDQDTNQLLGDLTED 61

Query: 176 TLAS 179
            L  
Sbjct: 62  ELKK 65


>gi|257418527|ref|ZP_05595521.1| predicted protein [Enterococcus faecalis T11]
 gi|257160355|gb|EEU90315.1| predicted protein [Enterococcus faecalis T11]
 gi|315167931|gb|EFU11948.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|256957211|ref|ZP_05561382.1| superfamily I DNA and RNA helicase [Enterococcus faecalis DS5]
 gi|307268008|ref|ZP_07549396.1| hypothetical protein HMPREF9498_00151 [Enterococcus faecalis
           TX4248]
 gi|256947707|gb|EEU64339.1| superfamily I DNA and RNA helicase [Enterococcus faecalis DS5]
 gi|306515649|gb|EFM84176.1| hypothetical protein HMPREF9498_00151 [Enterococcus faecalis
           TX4248]
 gi|315032438|gb|EFT44370.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
 gi|315034328|gb|EFT46260.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
 gi|329574118|gb|EGG55695.1| hypothetical protein HMPREF9520_02050 [Enterococcus faecalis
           TX1467]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|255974001|ref|ZP_05424587.1| superfamily I DNA and RNA helicase [Enterococcus faecalis T2]
 gi|307278372|ref|ZP_07559447.1| hypothetical protein HMPREF9515_00701 [Enterococcus faecalis
           TX0860]
 gi|255966873|gb|EET97495.1| superfamily I DNA and RNA helicase [Enterococcus faecalis T2]
 gi|306504878|gb|EFM74073.1| hypothetical protein HMPREF9515_00701 [Enterococcus faecalis
           TX0860]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|237785417|ref|YP_002906122.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758329|gb|ACR17579.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 807

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 12  ETIDLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL---LANAHPSTLL 66
              D+++  + EQ  +  DP R    V    G+GKT + + RV  LL        P+ +L
Sbjct: 201 HMTDIVATIQREQDTIIRDPYRGVTVVEGGPGTGKTAVALHRVAYLLYTWRDVLSPTGVL 260

Query: 67  CL----TH 70
            +    T 
Sbjct: 261 VIGPNRTF 268


>gi|320202837|emb|CBZ01828.1| C. elegans protein ZK1067.2b, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 2443

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 15   DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHT 71
            D + +++      +     + +    G+GKTHI VQ V  +L   ++      +L +  T
Sbjct: 1038 DYMDESQRLAFCNTFKYELSLIQGPPGTGKTHIGVQIVKTILQNRSYWKITEPILVVCFT 1097

Query: 72   KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
             +    +  R+ ++I     LS +    +I +  G K + + + +   +   + E  
Sbjct: 1098 NSGLDNLLERIYQMIENDEELSKDNGRPKIIRF-GSKCDSNYLKRQNVMRQDVYEQY 1153


>gi|315145780|gb|EFT89796.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
 gi|315163008|gb|EFU07025.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|297734699|emb|CBI16750.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 14/153 (9%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++  + + +L        A +    G+GKT  +V  V  LL+  A   ++L  ++T +A 
Sbjct: 277 LNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGA---SILLTSYTNSAV 333

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +  ++      +  +    +  E  +IQG   +  D+     + +  L+    + V  
Sbjct: 334 DNLLIKLKAQNIDFVRIGRHEVVHE--EIQGHCFSGMDIHSVEDIKLR-LDQVSVVAVT- 389

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
               C  I    PL AN      I DE     L
Sbjct: 390 ----CLGI--TNPLLANKRFDICIMDEAGQTTL 416


>gi|256617802|ref|ZP_05474648.1| superfamily I DNA and RNA helicase [Enterococcus faecalis ATCC
           4200]
 gi|312904493|ref|ZP_07763652.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|256597329|gb|EEU16505.1| superfamily I DNA and RNA helicase [Enterococcus faecalis ATCC
           4200]
 gi|310632191|gb|EFQ15474.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|211970484|emb|CAA93884.2| C. elegans protein ZK1067.2a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 2212

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHT 71
           D + +++      +     + +    G+GKTHI VQ V  +L   ++      +L +  T
Sbjct: 807 DYMDESQRLAFCNTFKYELSLIQGPPGTGKTHIGVQIVKTILQNRSYWKITEPILVVCFT 866

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
            +    +  R+ ++I     LS +    +I +  G K + + + +   +   + E  
Sbjct: 867 NSGLDNLLERIYQMIENDEELSKDNGRPKIIRF-GSKCDSNYLKRQNVMRQDVYEQY 922


>gi|86738833|ref|YP_479233.1| putative DNA helicase [Frankia sp. CcI3]
 gi|86565695|gb|ABD09504.1| putative DNA helicase [Frankia sp. CcI3]
          Length = 659

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMS 79
             QL+       A VS   G+GKT + + R   L   L       +L  T  +  AA++ 
Sbjct: 167 QRQLVDRVYGGPARVSGGPGTGKTIVALHRAGHLAARLPPGDDKPILLTTFNRNLAADLR 226

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            R L+++     L D +    I K+  +   ++  S+ R 
Sbjct: 227 ARFLDLVGP--DLVDRVDIVNIDKLASRVVGEAGASRRRR 264


>gi|17538027|ref|NP_495964.1| hypothetical protein ZK1067.2 [Caenorhabditis elegans]
          Length = 2219

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHT 71
           D + +++      +     + +    G+GKTHI VQ V  +L   ++      +L +  T
Sbjct: 807 DYMDESQRLAFCNTFKYELSLIQGPPGTGKTHIGVQIVKTILQNRSYWKITEPILVVCFT 866

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
            +    +  R+ ++I     LS +    +I +  G K + + + +   +   + E  
Sbjct: 867 NSGLDNLLERIYQMIENDEELSKDNGRPKIIRF-GSKCDSNYLKRQNVMRQDVYEQY 922


>gi|321460871|gb|EFX71909.1| hypothetical protein DAPPUDRAFT_227744 [Daphnia pulex]
          Length = 2342

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
            + + + E L  +  +R A V    G+GKT  L  R+LR LL N +
Sbjct: 509 GLDRKQREALQIALTSRVALVQGPPGTGKTF-LALRILRSLLDNKN 553


>gi|320532485|ref|ZP_08033307.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135304|gb|EFW27430.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 629

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL----LANAHPSTLLCLTHTKAAAA 76
           +   L+         VS  AG+GKT I V R + L          P  +L  T+T+  A 
Sbjct: 143 QQRALVERRANGPMRVSGGAGTGKTVIAVHRAVELAKRDKADGQEP-RILLTTYTRNLAD 201

Query: 77  EMSHRVLEI 85
           ++  ++ ++
Sbjct: 202 DLRRQIAQL 210


>gi|254450104|ref|ZP_05063541.1| ATPase [Octadecabacter antarcticus 238]
 gi|198264510|gb|EDY88780.1| ATPase [Octadecabacter antarcticus 238]
          Length = 514

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 20/108 (18%)

Query: 29  DPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAA 74
           DP RS   V   AGSGKT +L +    +  A                  TL  L  T  A
Sbjct: 41  DPLRSVLAVLGKAGSGKTLLLAELFKAMREAGVDIVSGDYEGKKRRDRRTLAILAPTNKA 100

Query: 75  AAEMSHR------VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           A+ + +R      +  I+    +  +    AE     G+KP    +++
Sbjct: 101 ASVLRNRGVPATTIHRILYTPMYDPEYEKIAEWLAGNGEKPEIEGLTE 148


>gi|311111763|ref|YP_003982985.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
 gi|310943257|gb|ADP39551.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
          Length = 1172

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA----EMSHRVLEIITAWS 90
            +    G+GKT  ++   +  L A   P+ LL LT T+A A     E++ R+   ++   
Sbjct: 5   LILGAPGTGKTERVITAAVDFLNAGGDPARLLVLTPTRAGATRVRDELARRIDRSMSTAP 64

Query: 91  HLSDEILSAEITK 103
             +    + ++ +
Sbjct: 65  TRAWAAYAFDLLR 77


>gi|218296132|ref|ZP_03496901.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218243509|gb|EED10038.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 542

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 39 NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
            G+GKT  L   V RLL +      +     ++AA  E + R+   +  
Sbjct: 15 PPGTGKTTWLKNEVERLLRSGVPGEEIAVCAFSRAAFREFASRLAGQVPE 64


>gi|256854224|ref|ZP_05559588.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256709784|gb|EEU24828.1| conserved hypothetical protein [Enterococcus faecalis T8]
          Length = 732

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 190 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 249

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 250 QHRAEITADNILLLSPNSTF 269


>gi|242074142|ref|XP_002447007.1| hypothetical protein SORBIDRAFT_06g026800 [Sorghum bicolor]
 gi|241938190|gb|EES11335.1| hypothetical protein SORBIDRAFT_06g026800 [Sorghum bicolor]
          Length = 1147

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            G+GKT+ +V  V  LL+      ++L  ++T +A
Sbjct: 760 PGTGKTYTMVHAVKSLLIRG---ESILLTSYTNSA 791


>gi|312901525|ref|ZP_07760798.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|311291320|gb|EFQ69876.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLL 57
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 58  AN---AHPSTLLCL----TH 70
            +        +L L    T 
Sbjct: 258 QHRVEITADNILLLSPNSTF 277


>gi|164663913|ref|NP_001099318.2| probable helicase with zinc finger domain [Rattus norvegicus]
          Length = 1964

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLCIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQET-SRILICTHS 700

Query: 72  KAAA 75
            +AA
Sbjct: 701 NSAA 704


>gi|320354827|ref|YP_004196166.1| exodeoxyribonuclease V subunit alpha [Desulfobulbus propionicus DSM
           2032]
 gi|320123329|gb|ADW18875.1| exodeoxyribonuclease V, alpha subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 620

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAA 74
           +   ++  +LA    R   +S   G+GKT+  V R+L LL  L    P  +     T  A
Sbjct: 156 VDWQRAAAVLALH-KRLVIISGGPGTGKTYT-VARMLALLIALTPTKP-RIALAAPTGKA 212

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           A  +   +     A   L    +  +   +        D    RH     L 
Sbjct: 213 ALRLRESIRRAKDALPPLLATPIPEQAQTLHRLLGVHHDRPGFRHHGANPLH 264


>gi|294780520|ref|ZP_06745883.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
 gi|294452347|gb|EFG20786.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
 gi|323480113|gb|ADX79552.1| conserved hypothetical protein [Enterococcus faecalis 62]
          Length = 732

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 190 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 249

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 250 QHRAEITADNILLLSPNSTF 269


>gi|157123114|ref|XP_001660014.1| hypothetical protein AaeL_AAEL009397 [Aedes aegypti]
 gi|108874507|gb|EAT38732.1| conserved hypothetical protein [Aedes aegypti]
          Length = 646

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 14/87 (16%)

Query: 12  ETIDLISQTKSEQLLASDP-------TRSAWVSANAGSGKTHILVQRV--LRLLLANAHP 62
           + ID+   T  EQ++A               +    G+GK+  LV+ +  +  L    HP
Sbjct: 153 QWIDIGISTNEEQMVAVRNIVNRTSFPAPYVLFGPPGTGKSSTLVEVIGQIYKL----HP 208

Query: 63  S-TLLCLTHTKAAAAEMSHRVLEIITA 88
              +L +  +  AA E++ R+L ++  
Sbjct: 209 EANMLVVAPSNFAANEITSRILNVVPE 235


>gi|73965269|ref|XP_548029.2| PREDICTED: similar to helicase with zinc finger domain isoform 1
           [Canis familiaris]
          Length = 1158

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQET-SRILICTHS 700

Query: 72  KAAA 75
            +AA
Sbjct: 701 NSAA 704


>gi|320007416|gb|ADW02266.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 711

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 21  KSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            S+  +A  P+ S  A V+   G+GKT + + RV  LL        +L  T+T 
Sbjct: 255 PSQHKVAYRPSYSGPAQVTGGPGTGKTVVALHRVRHLLGHLRDGDRVLLTTYTN 308


>gi|157123120|ref|XP_001660017.1| DNA-binding protein smubp-2 [Aedes aegypti]
 gi|108874510|gb|EAT38735.1| DNA-binding protein smubp-2 [Aedes aegypti]
          Length = 638

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 14/131 (10%)

Query: 17  ISQTKSEQLLASD------PTRSAWVSANAGSGKTHILVQRV--LRLLLANAHPSTLLCL 68
           ++    +Q    +            +    G+GKT  LV+ +  +  L  +A    +L  
Sbjct: 166 LAGNDEQQTAVVNIVNETARPAPFILFGPPGTGKTSTLVEAIAQIWKLKPDA---RVLVT 222

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILE 126
             +  A  E++ R+L ++     L      AE  ++++  +    S+++   + L +  E
Sbjct: 223 ASSNFACNELTERLLNVVPKEDILRFFSKQAERMMSEMSFRLIECSNLNTGTYRLPSPEE 282

Query: 127 TPG-GLKVQTI 136
             G  + + T+
Sbjct: 283 LYGSRIVISTL 293


>gi|11498749|ref|NP_069978.1| large helicase-related protein (lhr-1) [Archaeoglobus fulgidus DSM
           4304]
 gi|2649437|gb|AAB90094.1| large helicase-related protein (lhr-1) [Archaeoglobus fulgidus DSM
           4304]
          Length = 892

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT-- 71
           I+ +++ + E        +   + A  GSGKT   +  +   +L    P  ++ +  T  
Sbjct: 15  IEELTELQLEAFRKILSGKDVLIIAPTGSGKTEAAIIPIFEAMLKMEKPEGIVAIYITPL 74

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +A   +M  R+  I         E L   +    G  P+     ++R     ++ TP   
Sbjct: 75  RALNRDMLRRIRGI--------AEFLGIRVDVRHGDTPDSQRARQSRKPPHLLITTPETF 126

Query: 132 KV 133
           ++
Sbjct: 127 QI 128


>gi|257089343|ref|ZP_05583704.1| predicted protein [Enterococcus faecalis CH188]
 gi|256998155|gb|EEU84675.1| predicted protein [Enterococcus faecalis CH188]
 gi|315577285|gb|EFU89476.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 258 QHRAEITADNILLLSPNSTF 277


>gi|300859642|ref|ZP_07105730.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|300850460|gb|EFK78209.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
          Length = 732

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL- 56
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 190 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 249

Query: 57  --LANAHPSTLLCL----TH 70
              A      +L L    T 
Sbjct: 250 QHRAEITADNILLLSPNSTF 269


>gi|312379600|gb|EFR25821.1| hypothetical protein AND_08491 [Anopheles darlingi]
          Length = 3669

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 17   ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            ++  + E ++A     +       +    G+GKT+ L Q + +LLL +   + +L  TH+
Sbjct: 2083 LNSKQKEAVMAITTPINIALPPILLIGPFGTGKTYTLAQAIKQLLLQDN--TKILICTHS 2140

Query: 72   KAAA 75
             +AA
Sbjct: 2141 NSAA 2144


>gi|147676485|ref|YP_001210700.1| hypothetical protein PTH_0150 [Pelotomaculum thermopropionicum SI]
 gi|146272582|dbj|BAF58331.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 159

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS--HFAIADE 162
           D  K R L+    +  G L V TIH+FC  ++Q++     +     F + DE
Sbjct: 49  DPEKIRELIGHQPD-LGDLYVGTIHSFCYKLLQEY-----VPGYRGFDVLDE 94


>gi|302347981|ref|YP_003815619.1| Putative ATP-dependent helicase [Acidilobus saccharovorans 345-15]
 gi|302328393|gb|ADL18588.1| Putative ATP-dependent helicase [Acidilobus saccharovorans 345-15]
          Length = 938

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 10/120 (8%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKT-HILVQRVLRLLLAN-AHPSTLLCLTHTKA 73
            +++ +     A    ++  + A  G GKT   L+  + RL       P ++L +T  +A
Sbjct: 21  GLTELQERAARAILAGKNVLIMAPTGEGKTEAALLPLLTRLTNEGNVMPVSILYVTPMRA 80

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
              ++  R+            E L   + K  G  P+     + R+    +L TP  L++
Sbjct: 81  LINDLHRRISYW--------AEPLGLRVAKKHGDVPSSERYLRLRNPPHVLLTTPESLEI 132


>gi|295402809|ref|ZP_06812745.1| UvrD/REP helicase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975155|gb|EFG50797.1| UvrD/REP helicase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 602

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEI 85
          D  +   + A  G+GKTH LV+ +  +L  +      S + C+T+T   + E+  R+   
Sbjct: 19 DLHKHFKIIAGPGAGKTHWLVKHIRNVLQNSERLGKVSKIACITYTTVGSEEIIERLGTD 78

Query: 86 ITA 88
          I  
Sbjct: 79 IQR 81


>gi|229548869|ref|ZP_04437594.1| helicase [Enterococcus faecalis ATCC 29200]
 gi|255971383|ref|ZP_05421969.1| predicted protein [Enterococcus faecalis T1]
 gi|312952800|ref|ZP_07771662.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|229305890|gb|EEN71886.1| helicase [Enterococcus faecalis ATCC 29200]
 gi|255962401|gb|EET94877.1| predicted protein [Enterococcus faecalis T1]
 gi|310629316|gb|EFQ12599.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|315153005|gb|EFT97021.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
 gi|315155236|gb|EFT99252.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
 gi|315157563|gb|EFU01580.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
          Length = 740

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLL 57
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 198 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 257

Query: 58  AN---AHPSTLLCL----TH 70
            +        +L L    T 
Sbjct: 258 QHRVEITADNILLLSPNSTF 277


>gi|164519342|ref|YP_001649129.1| DNA helicase-2 [Helicoverpa armigera granulovirus]
 gi|163869528|gb|ABY47838.1| DNA helicase-2 [Helicoverpa armigera granulovirus]
          Length = 455

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 23/136 (16%)

Query: 14  IDLISQTKSEQLLASD------PTRSAWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLL 66
           +D  ++   +Q    D           +VS +AG+GK+ +L   R   +         + 
Sbjct: 20  LDAPTKLNEQQQQIFDYVTQRDSFEPIFVSGSAGTGKSALLKSLRTYWIDRKKV----VW 75

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            ++ T  AA      V           D   +          PN   + +   +   +L+
Sbjct: 76  VVSFTNLAARN----VDGQTIHKQFGFDFKCNLNANNKTVGAPNYFILDEVSMVPAKMLQ 131

Query: 127 TPGGLKVQTIHAFCEA 142
                    IH F + 
Sbjct: 132 N--------IHTFFQQ 139


>gi|320352397|ref|YP_004193736.1| hypothetical protein Despr_0259 [Desulfobulbus propionicus DSM
           2032]
 gi|320120899|gb|ADW16445.1| protein of unknown function DUF450 [Desulfobulbus propionicus DSM
           2032]
          Length = 1033

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 76/226 (33%), Gaps = 52/226 (23%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78
              A  P ++  +  +AGSGKT+    L  R+  L   + H     ++ +T         
Sbjct: 299 AARAEGPGQNYLIQHSAGSGKTNSISWLSHRLASLHDEHDHKVFDCVIVIT--------- 349

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R          + D  L   I +I+  +     + +    L + L     + V T   
Sbjct: 350 -DR---------QVLDRQLQDAIYQIEHAQGVVKAIDQDSKQLASALIDGTKIVVTT--- 396

Query: 139 FCEAIMQQFPLEA-NI--TSHFAIADE-EQSKKLIEEAKKS---------TLASIMLDNN 185
                +Q+FP     +  T+     D  +   K   +A ++          +        
Sbjct: 397 -----LQKFPFVLRGLLHTAGAENLDSPDDEAKAQAKAWEAEIGKRRYAVIVDEAHSSQT 451

Query: 186 EELKKAFYEILEISN-------DEDIETLISDIISNRTALKLIFFF 224
            E  +    IL  SN       + D+E  ++ ++++R     + FF
Sbjct: 452 GETARELKAILGASNGDMNDDEEADLEDRLNQVMASRGRQPNLSFF 497


>gi|297701592|ref|XP_002827793.1| PREDICTED: LOW QUALITY PROTEIN: probable helicase with zinc finger
           domain-like [Pongo abelii]
          Length = 1495

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 668 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQET-SRILICTHS 726

Query: 72  KAAA 75
            +AA
Sbjct: 727 NSAA 730


>gi|292656885|ref|YP_003536782.1| ATP-dependent DNA helicase Dna2 [Haloferax volcanii DS2]
 gi|291372654|gb|ADE04881.1| ATP-dependent DNA helicase Dna2 [Haloferax volcanii DS2]
          Length = 884

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ID          LA D    A +    G+GKTH +  R +R L+ + +   +L    T  
Sbjct: 511 IDNNDAQDDAVRLAVDADDLALIHGPPGTGKTHTIA-RTIRALVEDGN--RVLLSAFTNR 567

Query: 74  A 74
           A
Sbjct: 568 A 568


>gi|327438875|dbj|BAK15240.1| superfamily I DNA and RNA helicase [Solibacillus silvestris
          StLB046]
          Length = 374

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
          P+    + A AG+GKT +L++  +           +L LT+T A    M +
Sbjct: 3  PSNKRIIKAAAGTGKTTLLIEEAVLNYKEG----KVLYLTYTNANLNSMKN 49


>gi|260804491|ref|XP_002597121.1| hypothetical protein BRAFLDRAFT_76348 [Branchiostoma floridae]
 gi|229282384|gb|EEN53133.1| hypothetical protein BRAFLDRAFT_76348 [Branchiostoma floridae]
          Length = 708

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 14/138 (10%)

Query: 13  TIDLISQTKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRL---LLANAHPSTLL 66
           T D++    S+QL   +     R+  ++  AGSGKT IL+ +V  L   +        +L
Sbjct: 255 TRDVLQMFNSQQLALLNNVGLPRTQIITGPAGSGKTSILLHKVQALNTDISKTGKQEKIL 314

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH---LLIT 123
            L + K     +  R+ + +     ++ + L + + ++           +      L+  
Sbjct: 315 VLCYNKP----LKTRLTKELEKCRWVTVQTLDSILCQLSAAGSTDVAEMREEEKCALVDR 370

Query: 124 ILETPGGL-KVQTIHAFC 140
           +LE    + ++ T     
Sbjct: 371 VLEDRPRIHRMYTFDHIF 388


>gi|39938991|ref|NP_950757.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722100|dbj|BAD04590.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 873

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 45/197 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L + +K ++ + +      ++   AGSGKT IL++++ +       P  +L  T    A 
Sbjct: 2   LFNLSKEQKDIINSDASCMYIHGGAGSGKTTILIEKLRQK--EKEKPL-ILVAT---NAT 55

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +   + + +  +S L ++  S    +++    +  +                   ++T
Sbjct: 56  KNI---IYDKL--FSSLKEDYPSYNDDELEKYLKDNYE-------------------IRT 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQ-SKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+F  +              + I +E    +K I++  K  +  ++L  N++LK  F E
Sbjct: 92  FHSFAYS-----CYL-----KYNIFNETAKQRKFIDDETKLNILKLILKENQDLKLYFKE 141

Query: 195 ILEISNDEDIETLISDI 211
                       L+ ++
Sbjct: 142 ----QRKYSFRKLLQEL 154


>gi|289607684|emb|CBI60748.1| unnamed protein product [Sordaria macrospora]
          Length = 151

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90
           A  GSGKT +LV ++  L     H    +  L+HT AA  E+  ++       S
Sbjct: 10 EACPGSGKTTLLVAKLAVLATRWPHVHQGICVLSHTNAARNEIGAKLGNSAAGIS 64


>gi|300741872|ref|ZP_07071893.1| helicase, UvrD/Rep family [Rothia dentocariosa M567]
 gi|300381057|gb|EFJ77619.1| helicase, UvrD/Rep family [Rothia dentocariosa M567]
          Length = 1172

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA----EMSHRVLEIITAWS 90
            +    G+GKT  ++   +  L A   P+ LL LT T+A A     E++ R+   ++   
Sbjct: 5   LILGAPGTGKTERVITAAVDFLNAGGDPARLLVLTPTRAGATRVRDELARRIDRSMSTAP 64

Query: 91  HLSDEILSAEITK 103
             +    + ++ +
Sbjct: 65  TRAWAAYAFDLLR 77


>gi|257421177|ref|ZP_05598167.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|257163001|gb|EEU92961.1| conserved hypothetical protein [Enterococcus faecalis X98]
          Length = 732

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLL 57
           ++ H+  ++ S  +  I+ T  + +  +  D T+   +    AGSGKT  ++QR+  LL 
Sbjct: 190 VLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAIMQRIAYLLY 249

Query: 58  AN---AHPSTLLCL----TH 70
            +        +L L    T 
Sbjct: 250 QHRVEITADNILLLSPNSTF 269


>gi|169236231|ref|YP_001689431.1| helicase [Halobacterium salinarum R1]
 gi|167727297|emb|CAP14083.1| putative helicase [Halobacterium salinarum R1]
          Length = 878

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 21/171 (12%)

Query: 15  DLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           DLI    ++      A +    A V    G+GKT+ +   V   +        +L    T
Sbjct: 503 DLIPNNDAQNAAVNRALNAEDFALVHGPPGTGKTYTIATLVQAFVARG---DRVLVSAFT 559

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH----LLITILET 127
             A       V   + A      E +   +    G + +  D+   R          L +
Sbjct: 560 NRA-------VDNALDALRQQGHEDI-VRVGTETGVRADMQDLRLDRSGDPGERAAALRS 611

Query: 128 PGGLKVQTIHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
              +   T  A C   I+++   +  +    +   E  +   I    +  L
Sbjct: 612 APVVAATT--ATCGSRILRELEFDVVLVDEASQLTEPDTLAAINRGARFVL 660


>gi|50355943|ref|NP_938040.1| probable helicase with zinc finger domain [Mus musculus]
 gi|49900997|gb|AAH76626.1| Helicase with zinc finger domain [Mus musculus]
          Length = 1965

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q   + +L     S +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQ-AAKHILQQQETSRILICTHS 700

Query: 72  KAAA 75
            +AA
Sbjct: 701 NSAA 704


>gi|254303239|ref|ZP_04970597.1| helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323431|gb|EDK88681.1| helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 1475

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 9/123 (7%)

Query: 16  LISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              +T +EQ+       S     V    G+GKTH +   +   L        +L  + TK
Sbjct: 341 FTKETNNEQVEIIKNIYSHKAVVVQGPPGTGKTHTIANLLGHFLAEG---KNVLITSQTK 397

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEI---TKIQGKKPNKSDMSKARHLLITILETPG 129
            A   +  ++   I        +  S ++    +   +K    ++ + ++    I     
Sbjct: 398 KALEVLKEKIPNEIQDLCISMLDDDSNDLGNSVESISEKLGYLNLEQLKNEYEEIERNRN 457

Query: 130 GLK 132
            LK
Sbjct: 458 ELK 460


>gi|312139064|ref|YP_004006400.1| exodeoxyribonuclease v alpha subunit recd [Rhodococcus equi 103S]
 gi|311888403|emb|CBH47715.1| exodeoxyribonuclease V alpha subunit RecD [Rhodococcus equi 103S]
          Length = 618

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 18  SQTKSEQLLASDPTRSAW--VSAN-AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           S     Q +A+    + W  V A   G+GKTH  V RVL LL        +     T  A
Sbjct: 169 SDAPDRQRIAAAVAATHWTSVIAGGPGTGKTHT-VARVLALLERQQPGLRIGLAAPTGKA 227

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
           AA +   V E       L  E+ +  + ++ G +   S   
Sbjct: 228 AARLQESVREQ-ADLVGLRSELPAMTLHRMLGWQRGTSRFR 267


>gi|262280780|ref|ZP_06058563.1| exonuclease V alpha subunit [Acinetobacter calcoaceticus RUH2202]
 gi|262257680|gb|EEY76415.1| exonuclease V alpha subunit [Acinetobacter calcoaceticus RUH2202]
          Length = 583

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           + I L++    +  L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 119 DYISLLTDPHQQAALQMVARQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 177

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 178 TGKAAQRMQEALQNSFNDPKLLESGLMSEELRNQGTQTIHR 218


>gi|258514810|ref|YP_003191032.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778515|gb|ACV62409.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 564

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              I  T+ +  L         ++ +AGSGK+  L+ ++L+L+        +L L+ +K
Sbjct: 33 LFTGIELTREQMALVLQYEEQMLINGSAGSGKSITLLYKLLKLMEQEHKRQRILYLSFSK 92


>gi|296330136|ref|ZP_06872618.1| hypothetical protein BSU6633_03492 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673380|ref|YP_003865052.1| type I restriction-modification system restriction subunity (HsdR)
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296152725|gb|EFG93592.1| hypothetical protein BSU6633_03492 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411624|gb|ADM36743.1| type I restriction-modification system restriction subunity (HsdR)
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 996

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 54/225 (24%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
             +  +  +AGSGKT+    L  R+ +L   +     S+++ +T           R    
Sbjct: 303 GHNYLIQHSAGSGKTNSISWLAHRLAKLHNEDNESIFSSVIVIT----------DR---- 348

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 + D+ L   + +++ K      + K    L   +     + + T        +Q
Sbjct: 349 -----RVLDKQLQDAVYQLEHKAGMVEPIDKDSEQLARAINNETRIIITT--------LQ 395

Query: 146 QFPL----EANITSH--FAIADEE-------QSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +FP      A +       I DE         S  L       TL +   ++        
Sbjct: 396 KFPFILEKVAGLEHKKYAVIIDEAHSSQGGKASTALTNVLSDKTLEAAYEED-------- 447

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
             I E +  +  E ++  I+ +     + FF F+   + K +EK 
Sbjct: 448 -RIAEENLGDVDEKIVEAIMKSGKQDNVSFFAFTATPKPKTLEKF 491


>gi|311266934|ref|XP_003131321.1| PREDICTED: probable helicase with zinc finger domain-like [Sus
           scrofa]
          Length = 1944

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|291406408|ref|XP_002719258.1| PREDICTED: helicase with zinc finger domain, partial [Oryctolagus
           cuniculus]
          Length = 1894

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 595 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 652

Query: 72  KAAA 75
            +AA
Sbjct: 653 NSAA 656


>gi|301778505|ref|XP_002924670.1| PREDICTED: probable helicase with zinc finger domain-like
           [Ailuropoda melanoleuca]
 gi|281353597|gb|EFB29181.1| hypothetical protein PANDA_014050 [Ailuropoda melanoleuca]
          Length = 1944

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|194676347|ref|XP_001789664.1| PREDICTED: helicase with zinc finger [Bos taurus]
          Length = 1881

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 618 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 675

Query: 72  KAAA 75
            +AA
Sbjct: 676 NSAA 679


>gi|149723369|ref|XP_001499907.1| PREDICTED: helicase with zinc finger [Equus caballus]
          Length = 1944

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|73965263|ref|XP_850742.1| PREDICTED: similar to helicase with zinc finger domain isoform 2
           [Canis familiaris]
 gi|73965273|ref|XP_862343.1| PREDICTED: similar to helicase with zinc finger domain isoform 6
           [Canis familiaris]
          Length = 1944

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|73965271|ref|XP_862321.1| PREDICTED: similar to helicase with zinc finger domain isoform 5
           [Canis familiaris]
          Length = 1885

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 583 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 640

Query: 72  KAAA 75
            +AA
Sbjct: 641 NSAA 644


>gi|121603904|ref|YP_981233.1| hypothetical protein Pnap_0995 [Polaromonas naphthalenivorans
          CJ2]
 gi|120592873|gb|ABM36312.1| conserved hypothetical protein [Polaromonas naphthalenivorans
          CJ2]
          Length = 669

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----LLCLTHTKAAAAEMSHRV 82
          + A  GSGKT  L+ ++  L+L    P +    +L ++HT AA  E+ +++
Sbjct: 42 LQAVPGSGKTTALLAKL--LILDRYLPFSDGSGILVISHTNAAIDEIKNKI 90


>gi|228956081|ref|ZP_04117979.1| Helicase [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228982361|ref|ZP_04142633.1| Helicase [Bacillus thuringiensis Bt407]
 gi|228777373|gb|EEM25668.1| Helicase [Bacillus thuringiensis Bt407]
 gi|228803600|gb|EEM50321.1| Helicase [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 763

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            + S   D    TK +  L      +    +   AG+GKT+ LV  + +L     +P T 
Sbjct: 370 NKLSTVFDETDLTKEQLELLKSFVENKITLLLGRAGTGKTYTLVNLLKKL---KPNPRTT 426

Query: 66  LCLTHTKAAAAEMSHRVLEIITA 88
             LT+T  A    S R+ E+++ 
Sbjct: 427 FILTYTGKA----SVRIKELLSQ 445


>gi|170681239|ref|YP_001746742.1| ATP-dependent DNA helicase UvrD [Escherichia coli SMS-3-5]
 gi|170518957|gb|ACB17135.1| ATP-dependent DNA helicase, UvrD/REP family [Escherichia coli
           SMS-3-5]
          Length = 704

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 29/147 (19%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAA 76
            S++ L   P      V   AG+GKT + + R  R L   L +     +L  T T+  AA
Sbjct: 242 PSQRKLVESPANGPVRVLGGAGTGKTVVAMHR-ARWLSQRLVDKPGKKVLFTTFTRNLAA 300

Query: 77  EMSHRVLEIITAWSHLS------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           ++   +  + T            D  +S ++ +         D  + R            
Sbjct: 301 DIRANLQRLCTREEMARIDVVNIDAWMSDQLKRHGYDFRVVYDSDEGRRKCWNYA----- 355

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF 157
                        +QQ P E  +  +F
Sbjct: 356 -------------LQQAPAELGLPDNF 369


>gi|327279482|ref|XP_003224485.1| PREDICTED: probable helicase with zinc finger domain-like [Anolis
           carolinensis]
          Length = 1951

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L    H + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLTIQLPPVLIIGPYGTGKTFTLAQAVKHILQQ--HDTRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|163839981|ref|YP_001624386.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953457|gb|ABY22972.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 1073

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 70/218 (32%), Gaps = 16/218 (7%)

Query: 9   EHSETIDL--ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65
             S   D   +S  +++ +     +    +    G+GK+ +L++  +R +   +  P+ +
Sbjct: 14  SASRLADAPELSWDQAQIVERKQGSGPLLIWGAPGTGKSTVLIESTVRRVNHDDVDPAKV 73

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L L  ++ AAA +   +   +      S     A       ++     +      +  ++
Sbjct: 74  LLLAPSRVAAARLRDALSARLDRTVSTSPARSWASYAFDILRRAQAEGLVPNADRVPKLI 133

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL---IEEAKKSTLASIML 182
             P          F   ++    L   +       +E     L     +  +     I+ 
Sbjct: 134 SGPEQ------DLFIRELLAGHAL--GLAPGPQWPEELHEALLTRGFRQEVRQLFDRIV- 184

Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220
            +N  L     E+   +N  D +         R  ++L
Sbjct: 185 -DNGLLPSDLVELGRENNRPDWQAAAQLYREYRDLIEL 221


>gi|148283992|ref|YP_001202147.2| putative DNA helicase [Pseudomonas fluorescens SBW25]
 gi|146424403|emb|CAM96433.2| putative DNA helicase [Pseudomonas fluorescens SBW25]
          Length = 497

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74
          +   T+ +  + +   R   V+A AG+GKT  LV        A  HP   +L + +    
Sbjct: 1  MRQWTEEQYPIITTLARLVKVNAFAGTGKTTTLVG------YAENHPDEKILYIAYNTEV 54

Query: 75 AAEMSHR 81
          AAE   R
Sbjct: 55 AAEGKRR 61


>gi|52549654|gb|AAU83503.1| type I site-specific restriction-modification system R subunit and
           related helicases [uncultured archaeon GZfos29E12]
          Length = 889

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 43/223 (19%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           L  + P ++  +  + GSGKT  +      L+                        RV +
Sbjct: 189 LADAKPGKNYLIEHSNGSGKTKTIAWLAHGLINKFDSLDN----------------RVYD 232

Query: 85  --IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL--LITILETPGGLKVQTIHAFC 140
             I+ +   + D  L  +   I+  K     + K +    L   LET   + V T     
Sbjct: 233 MVIVVSDRRVIDTQLQNQAKSIEKVKGTVEVIDKKKTSDDLRKALETGSNIVVTT----- 287

Query: 141 EAIMQQFPLEA----NITSH--FAIADEEQSKK--LIEEAKKSTLASIMLDNNEELKKAF 192
              +Q+FP       ++       I DE  S +   +    K  L++  L+  E L    
Sbjct: 288 ---LQKFPYILEEVKDLPKRKYAVIIDEAHSSQTGTMARKMKQVLSTNSLEEAEALD--I 342

Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
            E+     DE  E L+ +I S R    + FF F+   + K +E
Sbjct: 343 EEM-----DEVDEELLREIESYRNLKNISFFAFTATPKNKTLE 380


>gi|315644606|ref|ZP_07897738.1| ATP-dependent DNA helicase UvrD [Paenibacillus vortex V453]
 gi|315280113|gb|EFU43410.1| ATP-dependent DNA helicase UvrD [Paenibacillus vortex V453]
          Length = 592

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLE 84
          V A  G+GKTH L+  +  +L    +    S + C+T+T  A  E+  R+  
Sbjct: 22 VIAGPGAGKTHWLITHIQNVLKNANNLTSTSKIACITYTTVAGEEIQKRLGS 73


>gi|21673454|ref|NP_661519.1| dihydroxy-acid dehydratase [Chlorobium tepidum TLS]
 gi|25008637|sp|Q8KER4|ILVD_CHLTE RecName: Full=Dihydroxy-acid dehydratase; Short=DAD
 gi|21646557|gb|AAM71861.1| dihydroxy-acid dehydratase [Chlorobium tepidum TLS]
          Length = 560

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +LA+DP R+  V A AG         R++ L+     P  +L  T
Sbjct: 220 ILAADPRRNELVKAAAG---------RIIDLVKKEVRPRQILTRT 255


>gi|308470136|ref|XP_003097303.1| hypothetical protein CRE_20452 [Caenorhabditis remanei]
 gi|308240393|gb|EFO84345.1| hypothetical protein CRE_20452 [Caenorhabditis remanei]
          Length = 2455

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 57/252 (22%)

Query: 9    EHSETIDL-----ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-- 61
              S  +D      + +++ +   A+     + +    G+GKTHI VQ V  +L   +H  
Sbjct: 1035 RISRLLDEFHPKNMDESQRQAFCATFKHELSLIQGPPGTGKTHIGVQIVKTMLQNRSHWK 1094

Query: 62   -PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE----------------------ILS 98
                +L + +T +       R+L +I     LS +                      I+ 
Sbjct: 1095 MTEPILVVCYTNSGLDNFLERILMMIEDDEELSKDNGKPKMIRYGRKCESEFLKRRNIMR 1154

Query: 99   AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ--TIHAFCEA-------IMQ---- 145
             ++ +      +++   +         +    L V   T+H  C         ++     
Sbjct: 1155 FDVHEQYRSTVSEAAQREQSKASGQRRKKADHLAVSSFTLH--CSRTELLSYTVLHHVMH 1212

Query: 146  -QFPLEANITSHFAI--ADEEQSKKLIEEAKKSTL------ASIMLDNNEELKKAFYEIL 196
              F  E N   +FAI   D  +     +EA    L       +  +   +  K  F EI 
Sbjct: 1213 PNFQDEIN---NFAIEHIDTREQPLNADEALACWLLDRDFGRATKMQTKKAKKSKFQEIP 1269

Query: 197  EISNDEDIETLI 208
            E S++E+    +
Sbjct: 1270 EDSDEENDRQFL 1281


>gi|195484834|ref|XP_002090839.1| GE13324 [Drosophila yakuba]
 gi|194176940|gb|EDW90551.1| GE13324 [Drosophila yakuba]
          Length = 1350

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           + + S   + E +  + Q    Q L +       V    G+GKT  +V+ + +L +    
Sbjct: 619 LNNRSISSNPEQMQAVRQIALSQRLPA----PYIVFGPPGTGKTSTIVEAIYQLYVNRPE 674

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
            + +L L  +  A  E++ R+L  I          L+   +    ++ +  D
Sbjct: 675 -THILVLAGSNTACDEVALRLLRAIAKAPESQPRPLTRIFSASCDRRIDNID 725


>gi|187779217|ref|ZP_02995690.1| hypothetical protein CLOSPO_02812 [Clostridium sporogenes ATCC
           15579]
 gi|187772842|gb|EDU36644.1| hypothetical protein CLOSPO_02812 [Clostridium sporogenes ATCC
           15579]
          Length = 745

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 21  KSEQLLASDPTR--SAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           + EQ  A    +  +  V   AGSGKT + + R+  LL  +   
Sbjct: 211 QREQNKAIRNEKYKNLIVQGPAGSGKTSVALHRIAYLLYKHRDI 254


>gi|39939045|ref|NP_950811.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722154|dbj|BAD04644.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 846

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 45/197 (22%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           L + +K ++ + +      ++   AGSGKT IL++++ +       P  +L  T    A 
Sbjct: 2   LFNLSKEQKDIINSDAFCMYIHGGAGSGKTTILIEKLRQK--EKEKPL-ILVAT---NAT 55

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
             +   + + +  +S L ++  S    +++    +  +                   ++T
Sbjct: 56  KNI---IYDKL--FSSLKEDYPSYNDDELEKYLKDNYE-------------------IRT 91

Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQ-SKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            H+F  +              + I +E    +K I++  K  +  ++L  N++LK  F E
Sbjct: 92  FHSFAYS-----CYL-----KYNIFNETAKQRKFIDDETKLNILKLILKENQDLKLYFKE 141

Query: 195 ILEISNDEDIETLISDI 211
                       L+ ++
Sbjct: 142 ----QRKYSFRKLLQEL 154


>gi|323483646|ref|ZP_08089030.1| recombination helicase AddA [Clostridium symbiosum WAL-14163]
 gi|323403073|gb|EGA95387.1| recombination helicase AddA [Clostridium symbiosum WAL-14163]
          Length = 1092

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 172 AKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
            +   L  +M D+     +AF   ++  +    +  I D I     +++  F  S  W  
Sbjct: 4   LRAEVLQELMEDSYANGGEAFERFVDTYSIGKADGGIEDYI-----MQVFSFAQSNPWPD 58

Query: 232 KIIE 235
           K  E
Sbjct: 59  KWFE 62


>gi|320170090|gb|EFW46989.1| ATP-dependent DNA helicase PIF1 [Capsaspora owczarzaki ATCC 30864]
          Length = 735

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
              +S   DL S  + + +  +   +S + +  AGSGKT +L   V RL+        +L
Sbjct: 245 ASRYSSYADL-SPEQQKVVDVALSGQSLFFTGGAGSGKTRVLNHIVQRLVDRYGSNDCVL 303

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
               T  AA+        +I   +  S   LSA          +  D    + L      
Sbjct: 304 VAAPTGMAAS--------LIGGVTIHSLIGLSAASNPTTANSQSSIDRPALQPLQQQSSN 355

Query: 127 TPGGLKVQT 135
            P G  V+T
Sbjct: 356 LPAGGAVRT 364


>gi|301109914|ref|XP_002904037.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262096163|gb|EEY54215.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 3773

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 22/185 (11%)

Query: 76   AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-----G 130
             E   RV  + T  +    +  S ++   Q  K ++  + +     +  L          
Sbjct: 3178 REAKARVTTLTTELNEAEAQEESMQVKVEQFWKQDRQQLERKYREAVDGLHELEPMDWYR 3237

Query: 131  LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
            L+   +     +I++ F +  N TS+F +  EE+ +   E+  K  +  + L +   LK 
Sbjct: 3238 LRSAKLDDTFMSILKAFCVLLNFTSNFQLELEEKQRC--EKLAKFEMEKLQLGDKAALKP 3295

Query: 191  AFYEILEISNDEDIETLISD-----IISNRTALK---------LIFFFFSYLWRRKIIEK 236
               E++E  +  D+  L+S+     I+ +R  L          ++  F +Y +   I   
Sbjct: 3296 P-PELIEFPSRRDVLRLLSNSDENVILGDREGLIHRYAVKALYVLPLFDAYSFAEGIRRA 3354

Query: 237  SLWSI 241
             L S+
Sbjct: 3355 RLLSL 3359


>gi|170030076|ref|XP_001842916.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167865922|gb|EDS29305.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 638

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 39  NAGSGKTHILVQRV--LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
             G+GKT  LV+ +  +  L      + +L +  + +AA E++ R+LEII
Sbjct: 228 PPGTGKTSTLVEAIGQIYKLR---PAANVLAVATSNSAANELTSRLLEII 274


>gi|293417812|ref|ZP_06660434.1| hypothetical protein ECDG_02732 [Escherichia coli B185]
 gi|291430530|gb|EFF03528.1| hypothetical protein ECDG_02732 [Escherichia coli B185]
          Length = 616

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 53/246 (21%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           + F   + TI  I   + EQL  S       +   AGSGKT IL  R   L   N     
Sbjct: 222 DEFSVDAPTIISILDIQQEQLARSMRDGHRIIHGVAGSGKTLILYHRCQELAKKNDSEKP 281

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L + +                                          +++ A+ L    
Sbjct: 282 ILVICY------------------------------------------NITLAKKLRSMF 299

Query: 125 LETP--GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL----IEEAKKSTLA 178
           +  P    +KV   HA+C   +++   +  I     I +  +          + K    +
Sbjct: 300 INHPFEEKIKVNNFHAWCFQQIKKN--KITIPEGDNIFENMEQALTDGFNTGKIKPEQYS 357

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIFFFFSYLWRRKIIE 235
           ++++D   + K  + +IL    D   E L+    D  S     K + F  S +  +    
Sbjct: 358 AVLIDEGHDFKPEWLKILAKMTDSQDENLLFLYDDAQSIYQKKKALDFTLSSVDIKATGR 417

Query: 236 KSLWSI 241
            ++ +I
Sbjct: 418 TTILNI 423


>gi|321464153|gb|EFX75163.1| hypothetical protein DAPPUDRAFT_199569 [Daphnia pulex]
          Length = 1057

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 9   EHSETIDLISQTKSEQLLA--SDPT--RSAWVSANA-GSGKTHILVQRVLRLLLANAHPS 63
           E  E +  ++  + + + A  S+P   R+  V A   G+GKT    Q  ++++L     +
Sbjct: 475 EIPEMVTKLNVQQQQAVAAIYSNPRQKRAPIVIAGPYGTGKTFTFAQ-CIKVILDQPD-T 532

Query: 64  TLLCLTHTKAAA 75
            +L  TH+ +AA
Sbjct: 533 RVLVCTHSNSAA 544


>gi|303283432|ref|XP_003061007.1| tRNA-splicing endonuclease positive effector [Micromonas pusilla
           CCMP1545]
 gi|226457358|gb|EEH54657.1| tRNA-splicing endonuclease positive effector [Micromonas pusilla
           CCMP1545]
          Length = 1099

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +++++   L ++   R   V    G+GKT+  V  V  LL  N  P  +LC + +  A  
Sbjct: 562 LNESQRNALRSALTNRLTLVQGPPGTGKTYTSVAIVKGLLAMNRGP--VLCTSDSNTAVD 619

Query: 77  EM-------SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            +         RV+  +     +  E+L   + ++   +         +  L   
Sbjct: 620 NLVQGMADARMRVV-RVGRSEAVRPELLKYVLERMFNDRTGPERSLAQQRALRQA 673


>gi|302771293|ref|XP_002969065.1| hypothetical protein SELMODRAFT_409873 [Selaginella
          moellendorffii]
 gi|300163570|gb|EFJ30181.1| hypothetical protein SELMODRAFT_409873 [Selaginella
          moellendorffii]
          Length = 664

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAH 61
            + A   SGKT  +V R+L LL     
Sbjct: 18 LLIVAGPRSGKTSTMVARILTLLNEGVD 45


>gi|255020480|ref|ZP_05292545.1| Exodeoxyribonuclease V alpha chain [Acidithiobacillus caldus ATCC
           51756]
 gi|254970090|gb|EET27587.1| Exodeoxyribonuclease V alpha chain [Acidithiobacillus caldus ATCC
           51756]
          Length = 654

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 15/130 (11%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            ++   GSGKT+ +  R+L LL+  A P  +     T  AA  M   + + +  +    D
Sbjct: 203 LITGGPGSGKTYTIA-RLLVLLMQ-AAPRRVALAAPTGKAALRMDTALRQSVDDFVRRGD 260

Query: 95  EIL---------SAEITKIQGKKPNKSDMSKA--RHLLITILETPGGLKVQTIHAFCEAI 143
           + L         +  + ++ G +P    +     R L   +L       +Q  H    A+
Sbjct: 261 DDLADLLRQVPPAQTLHRLLGARPGTRRLRHDAHRPLNFDLLVVDEASMIQ--HDLMAAL 318

Query: 144 MQQFPLEANI 153
           ++  P  + +
Sbjct: 319 LRATPARSQL 328


>gi|15834922|ref|NP_296681.1| exodeoxyribonuclease V, alpha subunit [Chlamydia muridarum Nigg]
 gi|270285092|ref|ZP_06194486.1| exodeoxyribonuclease V, alpha subunit [Chlamydia muridarum Nigg]
 gi|270289115|ref|ZP_06195417.1| exodeoxyribonuclease V, alpha subunit [Chlamydia muridarum Weiss]
 gi|301336488|ref|ZP_07224690.1| exodeoxyribonuclease V, alpha subunit [Chlamydia muridarum
           MopnTet14]
 gi|7190342|gb|AAF39167.1| exodeoxyribonuclease V, alpha subunit [Chlamydia muridarum Nigg]
          Length = 744

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 6   SFQEHSETIDL-ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +  E    +DL +   + E L AS   +   +S   G+GK   + + +L +    + P  
Sbjct: 319 AILEVENLLDLKLEDKQKEALYASSSQKIHIISGGPGTGK-STITRAILSIFEKISSPQK 377

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++    T  AA  M+    +       L          +   + P   D+         +
Sbjct: 378 IILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDL---------V 428

Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147
           +    G+ + TI      ++Q+F
Sbjct: 429 IIDESGM-IDTI------LLQRF 444


>gi|317122039|ref|YP_004102042.1| type II secretion system protein E [Thermaerobacter marianensis DSM
           12885]
 gi|315592019|gb|ADU51315.1| type II secretion system protein E [Thermaerobacter marianensis DSM
           12885]
          Length = 416

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 20/126 (15%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM----- 78
             A    R+  +S    SGKT  L    + LL A  HP   ++ L      AAE+     
Sbjct: 201 AEAVRSRRNVLISGATSSGKTTTL----IALLRAATHPLERIITL----EEAAEIDLGPD 252

Query: 79  SH--RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR----HLLITILETPGGLK 132
            H  R+              L   +      +P++  + + R      L+  L T     
Sbjct: 253 RHVVRLEARPPGLDGQGAVPLRTLLRNALRMRPDRLVVGEVRGEEAADLMQALNTGHLGS 312

Query: 133 VQTIHA 138
           V TIHA
Sbjct: 313 VSTIHA 318


>gi|307170165|gb|EFN62572.1| Fatty acid synthase [Camponotus floridanus]
          Length = 4382

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 8    QEHSETIDLISQTKSEQLLA-------SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
            ++  + I+   +   EQ  A       +       +    G+GKT  LV+ + + ++ + 
Sbjct: 3913 EDDIKWINPNIEKNKEQKQAIRKILSKTAYPAPYIIFGPPGTGKTATLVETISQ-IVKHY 3971

Query: 61   HPSTLLCLTHTKAAAAEMSHR--VLEIITAWSHLSDE 95
                +L    + AA  E++ R  V E +   ++  D+
Sbjct: 3972 PTKNILVCATSNAAVDEIAKRGNVDEKLRPCANFVDK 4008


>gi|291529663|emb|CBK95249.1| UvrD/REP helicase [Eubacterium rectale M104/1]
          Length = 365

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLAN 59
            + +Q +         V+A AGSGKT   + QR + ++   
Sbjct: 292 NEEQQAIVDARNGIFIVNAGAGSGKTETAIKQRTVSIIEEE 332


>gi|302335289|ref|YP_003800496.1| superfamily I DNA and RNA helicase-like protein [Olsenella uli DSM
           7084]
 gi|301319129|gb|ADK67616.1| superfamily I DNA and RNA helicase-like protein [Olsenella uli DSM
           7084]
          Length = 731

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 9   EHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
            HSE +  I+ T  + +  +       A + +  AGSGKT +L+QR+  LL
Sbjct: 198 HHSEKLQAITATIQREQNRVIRHRDVGALIVSGIAGSGKTSVLLQRIAFLL 248


>gi|213965910|ref|ZP_03394101.1| helicase, uvrd/rep family [Corynebacterium amycolatum SK46]
 gi|213951488|gb|EEB62879.1| helicase, uvrd/rep family [Corynebacterium amycolatum SK46]
          Length = 1119

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           V    G+GK+ +L    +  + A     ++L ++ +K AAAE+   +     
Sbjct: 55  VLGGPGTGKSSLLADLAVDYMQAGIPADSILVVSQSKEAAAELRRDIDRRFA 106


>gi|15834646|ref|NP_296405.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydia
           muridarum Nigg]
 gi|270284812|ref|ZP_06194206.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydia
           muridarum Nigg]
 gi|270288841|ref|ZP_06195143.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydia
           muridarum Weiss]
 gi|301336192|ref|ZP_07224394.1| exodeoxyribonuclease V alpha chain [Chlamydia muridarum MopnTet14]
 gi|7190061|gb|AAF38913.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydia
           muridarum Nigg]
          Length = 497

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSA---WVSANAGSGKTHILVQRVLRLLLANAHP 62
           +    S   + +SQ   EQ        ++    V    G+GKT  L  +++RL+L+    
Sbjct: 124 AVPRTSLIFENVSQLSEEQNAVLGNVLNSCFSLVCGGPGTGKTF-LAVQMIRLILSQIPS 182

Query: 63  STLLCLTHTKAAAA 76
           + ++  + T  AAA
Sbjct: 183 AQIVVASPTGKAAA 196


>gi|170030078|ref|XP_001842917.1| DNA-binding protein smubp-2 [Culex quinquefasciatus]
 gi|167865923|gb|EDS29306.1| DNA-binding protein smubp-2 [Culex quinquefasciatus]
          Length = 708

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 39  NAGSGKTHILVQRV--LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
             G+GKT  L + +  +  L  +     +L +  + +AA E++ R+LEII  
Sbjct: 242 PPGTGKTSTLAEAIGQIYKLRPSV---NVLAVATSNSAANELTSRLLEIIPE 290


>gi|170030082|ref|XP_001842919.1| potentail helicase MOV-10 [Culex quinquefasciatus]
 gi|167865925|gb|EDS29308.1| potentail helicase MOV-10 [Culex quinquefasciatus]
          Length = 708

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 39  NAGSGKTHILVQRV--LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
             G+GKT  L + +  +  L  +     +L +  + +AA E++ R+LEII  
Sbjct: 242 PPGTGKTSTLAEAIGQIYKLRPSV---NVLAVATSNSAANELTSRLLEIIPE 290


>gi|54024516|ref|YP_118758.1| putative RecD protein [Nocardia farcinica IFM 10152]
 gi|54016024|dbj|BAD57394.1| putative RecD protein [Nocardia farcinica IFM 10152]
          Length = 628

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN------AHPSTLLCL 68
           D     +      +    +  V+   G+GKTH +  R+L LL A+      A P  +   
Sbjct: 174 DGAPDRQRLAAALAATHWTTVVAGGPGTGKTHTIA-RILALLDAHRRADPKAPPLRIALA 232

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             T  AAA +   V E          E+ +A + ++ G +  +    +
Sbjct: 233 APTGKAAARLQEAVREQAGELGL--PELSAATLHRLLGWQRGRRTRFR 278


>gi|313123869|ref|YP_004034128.1| DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280432|gb|ADQ61151.1| DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 2346

 Score = 40.2 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 20  TKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            K +  +A +   S    V    G+GKTH +   +   L       ++L  +++  A + 
Sbjct: 379 NKEQLQIAREIQHSDKVLVQGPPGTGKTHTIANLIGNFLAQG---QSILVSSYSSKALSV 435

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           +  ++ E + +      +  + ++ +             +  L     E   
Sbjct: 436 LKDKLPEELQSLCVAVFDDSNKDMERSIDGISEHMSNESSEGLRAKAKEQAN 487


>gi|115653102|ref|XP_780726.2| PREDICTED: similar to Probable helicase with zinc-finger domain
           [Strongylocentrotus purpuratus]
 gi|115960709|ref|XP_001188937.1| PREDICTED: similar to Probable helicase with zinc-finger domain
           [Strongylocentrotus purpuratus]
          Length = 1219

 Score = 40.2 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 8   QEHSETIDL-ISQTKSEQLLA-----SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           ++ S+ +D+ ++  + E ++A            ++    G+GKT+ L     RL+L   +
Sbjct: 108 KQWSDKMDMQMNSKQREAIVAMTTPLVHQLPPIFLVGPYGTGKTYTLAH-ATRLILQQPN 166

Query: 62  PSTLLCLTHTKAAA 75
            + +L  TH+ +AA
Sbjct: 167 -TKILICTHSNSAA 179


>gi|312114250|ref|YP_004011846.1| hypothetical protein Rvan_1492 [Rhodomicrobium vannielii ATCC
          17100]
 gi|311219379|gb|ADP70747.1| hypothetical protein Rvan_1492 [Rhodomicrobium vannielii ATCC
          17100]
          Length = 379

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          +  V A AGSGKT  LV++ L           +L  T+T++   E+  +  EI
Sbjct: 5  NKLVIAAAGSGKTTYLVRQALA-----VEQKRVLITTYTESNEEEIRRKFFEI 52


>gi|261407305|ref|YP_003243546.1| UvrD/Rep family helicase [Paenibacillus sp. Y412MC10]
 gi|261283768|gb|ACX65739.1| UvrD/Rep family helicase [Paenibacillus sp. Y412MC10]
          Length = 808

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 10  HSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
            S+   ++S  + EQ     +D +R   V   AGSGKT   +QRV  LL  N  
Sbjct: 201 DSQMKSIVSTIQREQNAIIRNDRSRLLIVQGAAGSGKTSAALQRVAYLLYKNRD 254


>gi|221636102|ref|YP_002523978.1| hypothetical protein trd_A0696 [Thermomicrobium roseum DSM 5159]
 gi|221157417|gb|ACM06535.1| hypothetical protein trd_A0696 [Thermomicrobium roseum DSM 5159]
          Length = 1149

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 30  PTRSAWVSANAGSGKTHILVQRV----LRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82
           P     V    G+GKT ++   V     R LL  A P     +L LT+T  AA E+  +V
Sbjct: 666 PGDLLLVQGPPGTGKTALIAAIVRGLLARALLDPARPAGRRPVLVLTNTHRAANEVVRKV 725

Query: 83  LEIITA 88
            + +  
Sbjct: 726 RQDVPE 731


>gi|296435549|gb|ADH17723.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis G/9768]
 gi|296437409|gb|ADH19570.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis G/11074]
 gi|297139908|gb|ADH96666.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis G/9301]
          Length = 746

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 18/143 (12%)

Query: 6   SFQEHSETIDL-ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +  E    +DL + + + E L AS   +   +S   G+GK   + + +L +    + P  
Sbjct: 319 AILEVENLLDLKLEEKQKEALHASSSQKIHIISGGPGTGK-STITRAILSIFEKISSPKK 377

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++    T  AA  M+    +       L          +   + P   D+         +
Sbjct: 378 IILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDL---------V 428

Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147
           +    G+ + TI      ++Q+F
Sbjct: 429 IVDESGM-IDTI------LLQRF 444


>gi|255506605|ref|ZP_05382244.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis D(s)2923]
 gi|296438336|gb|ADH20489.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis E/11023]
          Length = 746

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 18/143 (12%)

Query: 6   SFQEHSETIDL-ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +  E    +DL + + + E L AS   +   +S   G+GK   + + +L +    + P  
Sbjct: 319 AILEVENLLDLKLEEKQKEALHASSSQKIHIISGGPGTGK-STITRAILSIFEKISSPKK 377

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++    T  AA  M+    +       L          +   + P   D+         +
Sbjct: 378 IILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDL---------V 428

Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147
           +    G+ + TI      ++Q+F
Sbjct: 429 IVDESGM-IDTI------LLQRF 444


>gi|115373405|ref|ZP_01460703.1| hypothetical protein STIAU_7375 [Stigmatella aurantiaca DW4/3-1]
 gi|310822543|ref|YP_003954901.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115369571|gb|EAU68508.1| hypothetical protein STIAU_7375 [Stigmatella aurantiaca DW4/3-1]
 gi|309395615|gb|ADO73074.1| Helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 1140

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA 88
             G+GKT  +   + + L   A+P   +L +  T  AA E+  RV  ++  
Sbjct: 251 PPGTGKTTAVAGLIAQALR--AYPGERILAVAPTNRAADELVMRVSALLER 299



 Score = 34.9 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           AGSGKT++L   V+R LL    P   + ++ 
Sbjct: 751 AGSGKTYVLAHWVVRYLLE--RPQARVLVSF 779


>gi|114670111|ref|XP_001163943.1| PREDICTED: helicase with zinc finger domain isoform 1 [Pan
           troglodytes]
 gi|114670113|ref|XP_001164061.1| PREDICTED: helicase with zinc finger domain isoform 2 [Pan
           troglodytes]
 gi|114670115|ref|XP_511637.2| PREDICTED: helicase with zinc finger domain isoform 3 [Pan
           troglodytes]
          Length = 1942

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L        +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQEA--RILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|76788745|ref|YP_327831.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis A/HAR-13]
 gi|237804382|ref|YP_002888536.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76167275|gb|AAX50283.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis A/HAR-13]
 gi|231272682|emb|CAX09585.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 746

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 18/143 (12%)

Query: 6   SFQEHSETIDL-ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +  E    +DL + + + E L AS   +   +S   G+GK   + + +L +    + P  
Sbjct: 319 AILEVENLLDLKLEEKQKEALHASSSQKIHIISGGPGTGK-STITRAILSIFEKISSPKK 377

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++    T  AA  M+    +       L          +   + P   D+         +
Sbjct: 378 IILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDL---------V 428

Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147
           +    G+ + TI      ++Q+F
Sbjct: 429 IVDESGM-IDTI------LLQRF 444


>gi|325284445|ref|YP_004256985.1| putative UvrD/rep helicase family protein [Deinococcus
           proteolyticus MRP]
 gi|324316509|gb|ADY27622.1| putative UvrD/rep helicase family protein [Deinococcus
           proteolyticus MRP]
          Length = 708

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 15  DLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN------AHPSTLL 66
           D++   +  Q  A  +DP R   V  +AG+GKT +   R+  L   +      A P  +L
Sbjct: 179 DVVETLQPAQYDAMTADPARFQIVQGSAGAGKTTVGFHRLAWLCGPDRPEQVRARPEGIL 238

Query: 67  CL 68
            L
Sbjct: 239 AL 240


>gi|255310834|ref|ZP_05353404.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 6276]
 gi|255317134|ref|ZP_05358380.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 6276s]
          Length = 746

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 18/143 (12%)

Query: 6   SFQEHSETIDL-ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +  E    +DL + + + E L AS   +   +S   G+GK   + + +L +    + P  
Sbjct: 319 AILEVENLLDLKLEEKQKEALHASSSQKIHIISGGPGTGK-STITRAILSIFEKISSPKK 377

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++    T  AA  M+    +       L          +   + P   D+         +
Sbjct: 378 IILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDL---------V 428

Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147
           +    G+ + TI      ++Q+F
Sbjct: 429 IVDESGM-IDTI------LLQRF 444


>gi|224074533|ref|XP_002198013.1| PREDICTED: similar to Helicase with zinc finger [Taeniopygia
           guttata]
          Length = 1941

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 641 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQD--TRILICTHS 698

Query: 72  KAAA 75
            +AA
Sbjct: 699 NSAA 702


>gi|166154254|ref|YP_001654372.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 434/Bu]
 gi|166155129|ref|YP_001653384.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|255348395|ref|ZP_05380402.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 70]
 gi|255502936|ref|ZP_05381326.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 70s]
 gi|301335503|ref|ZP_07223747.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis L2tet1]
 gi|165930242|emb|CAP03727.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 434/Bu]
 gi|165931117|emb|CAP06681.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|289525078|emb|CBJ14548.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis Sweden2]
 gi|296434618|gb|ADH16796.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis E/150]
          Length = 746

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 18/143 (12%)

Query: 6   SFQEHSETIDL-ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +  E    +DL + + + E L AS   +   +S   G+GK   + + +L +    + P  
Sbjct: 319 AILEVENLLDLKLEEKQKEALHASSSQKIHIISGGPGTGK-STITRAILSIFEKISSPKK 377

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++    T  AA  M+    +       L          +   + P   D+         +
Sbjct: 378 IILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDL---------V 428

Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147
           +    G+ + TI      ++Q+F
Sbjct: 429 IVDESGM-IDTI------LLQRF 444


>gi|149635086|ref|XP_001510313.1| PREDICTED: similar to Helicase with zinc finger [Ornithorhynchus
           anatinus]
          Length = 1935

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQD--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|126308832|ref|XP_001379153.1| PREDICTED: similar to Helicase with zinc finger [Monodelphis
           domestica]
          Length = 1938

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQD--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|119963788|ref|YP_948453.1| ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter aurescens
          TC1]
 gi|119950647|gb|ABM09558.1| putative ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter
          aurescens TC1]
          Length = 1118

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80
          +    V    G+GK+ +LV+  +R +      P  +L L   + AAA +  
Sbjct: 44 SGPVLVPGGPGTGKSTVLVESAVRRVREDGLDPEQILVLAPGRHAAAALRD 94


>gi|118099746|ref|XP_415679.2| PREDICTED: similar to helicase with zinc finger domain [Gallus
           gallus]
          Length = 1941

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 641 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQD--TRILICTHS 698

Query: 72  KAAA 75
            +AA
Sbjct: 699 NSAA 702


>gi|237802467|ref|YP_002887661.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231273701|emb|CAX10479.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 746

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 18/143 (12%)

Query: 6   SFQEHSETIDL-ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +  E    +DL + + + E L AS   +   +S   G+GK   + + +L +    + P  
Sbjct: 319 AILEVENLLDLKLEEKQKEALHASSSQKIHIISGGPGTGK-STITRAILSIFEKISSPKK 377

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++    T  AA  M+    +       L          +   + P   D+         +
Sbjct: 378 IILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDL---------V 428

Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147
           +    G+ + TI      ++Q+F
Sbjct: 429 IVDESGM-IDTI------LLQRF 444


>gi|260814023|ref|XP_002601715.1| hypothetical protein BRAFLDRAFT_215302 [Branchiostoma floridae]
 gi|229287017|gb|EEN57727.1| hypothetical protein BRAFLDRAFT_215302 [Branchiostoma floridae]
          Length = 681

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 16  LISQTKSEQLLASDP-------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
             S+   +Q  A               +    G+GKT  LV+ +L+ +      S ++  
Sbjct: 229 FNSRLNQQQRAAVTRILRAEARPAPYILFGPPGTGKTVTLVEAILQ-VFHTLPYSRIIAC 287

Query: 69  THTKAAAAEMSHRVLE 84
           T + +AA  ++ R+  
Sbjct: 288 TPSNSAADLLAERLHS 303


>gi|195111226|ref|XP_002000180.1| GI10089 [Drosophila mojavensis]
 gi|193916774|gb|EDW15641.1| GI10089 [Drosophila mojavensis]
          Length = 1483

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 809 TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNQPNQRTLIVTHSNQALNQ 867

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +++ +     HL      +E L  E    +  + N   ++K   LL  +      L 
Sbjct: 868 LFEKIMALDIDERHLLRLGHGEEALETEKDFSRYGRVN-YVLAKRMDLLTQVQRLQEALN 926

Query: 133 VQ 134
           V 
Sbjct: 927 VS 928


>gi|218247595|ref|YP_002372966.1| UvrD/REP helicase [Cyanothece sp. PCC 8801]
 gi|257061072|ref|YP_003138960.1| UvrD/REP helicase [Cyanothece sp. PCC 8802]
 gi|218168073|gb|ACK66810.1| UvrD/REP helicase [Cyanothece sp. PCC 8801]
 gi|256591238|gb|ACV02125.1| UvrD/REP helicase [Cyanothece sp. PCC 8802]
          Length = 783

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 57/160 (35%)

Query: 11  SETIDLISQTKS--------EQLLASDPTRSAWVSANAGSGKTHILVQ-------RVLRL 55
           SE  DL  + +         +Q LA        +SA  G+GK+H L         R    
Sbjct: 4   SEYFDLAEKLQEIRNSLRPGQQQLADWKGGQMAISAVPGAGKSHSLAVAAALAIARY--- 60

Query: 56  LLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
                HP   L+ +T+T++AAA +  ++ + +                            
Sbjct: 61  ---QLHPRKQLVIVTYTRSAAAGIKTKIKQRLRELRLPQT-------------------- 97

Query: 115 SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                          G  VQT+H     I  + P  + + 
Sbjct: 98  ---------------GFMVQTLHGLALNIASRHPELSQLN 122


>gi|108761595|ref|YP_633625.1| putative helicase [Myxococcus xanthus DK 1622]
 gi|108465475|gb|ABF90660.1| putative helicase [Myxococcus xanthus DK 1622]
          Length = 706

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 12  ETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRL 55
           +   + +   +EQ  A    P R   V  +AGSGKT + + R+ +L
Sbjct: 225 DAFGVTAMLDAEQYEALSTGPDRPLLVLGSAGSGKTTVALHRLAKL 270


>gi|329926532|ref|ZP_08280946.1| helicase IV [Paenibacillus sp. HGF5]
 gi|328939267|gb|EGG35629.1| helicase IV [Paenibacillus sp. HGF5]
          Length = 804

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 10  HSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
            S+   ++S  + EQ     +D +R   V   AGSGKT   +QRV  LL  N  
Sbjct: 201 DSQMKSIVSTIQREQNAIIRNDRSRLLIVQGAAGSGKTSAALQRVAYLLYKNRD 254


>gi|239500908|ref|ZP_04660218.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           AB900]
          Length = 583

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E +DL++       L     +S   ++   G+GKT+ L  R++ +L        +     
Sbjct: 119 EHLDLLTDPHQRAALQMVSRQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 177

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +             ++S E+     +  ++
Sbjct: 178 TGKAAQRMQEALQNSFNDPKLFESGLMSDELRNQSTQTIHR 218


>gi|169830099|ref|YP_001700257.1| YvgS [Lysinibacillus sphaericus C3-41]
 gi|168994587|gb|ACA42127.1| YvgS [Lysinibacillus sphaericus C3-41]
          Length = 768

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 7   FQEHSETIDLISQT-KSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL---LANA 60
            Q  +E I  I  T ++EQ        S    V   AGSGKT + +QRV  LL       
Sbjct: 198 AQNANEHIRSIVATIQAEQNKIIRHIHSRYLIVEGVAGSGKTAVALQRVAYLLYRYRNEM 257

Query: 61  HPSTLLCLT 69
               +L +T
Sbjct: 258 TADQILLIT 266


>gi|126653495|ref|ZP_01725588.1| YvgS [Bacillus sp. B14905]
 gi|126589773|gb|EAZ83907.1| YvgS [Bacillus sp. B14905]
          Length = 767

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 7   FQEHSETIDLISQT-KSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL---LANA 60
            Q  +E I  I  T ++EQ        S    V   AGSGKT + +QRV  LL       
Sbjct: 198 AQNANEHIRSIVATIQAEQNKIIRHIHSRYLIVEGVAGSGKTAVALQRVAYLLYRYRNEM 257

Query: 61  HPSTLLCLT 69
               +L +T
Sbjct: 258 TADQILLIT 266


>gi|300865249|ref|ZP_07110063.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336722|emb|CBN55213.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 799

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 36/118 (30%)

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             L+ +T T++AAA +  ++ + + A S                                
Sbjct: 101 RQLIVVTFTRSAAASIKAKIRKNLQALSL------------------------------- 129

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179
               + G   V T+H     I  + P  + +   +  +    +S +LI    +  +A 
Sbjct: 130 ----SEGAFTVNTLHGLALNIALRHPDLSGLDLENSTLITPNKSHRLIRICVEQWIAE 183


>gi|325914236|ref|ZP_08176586.1| hypothetical protein XVE_0453 [Xanthomonas vesicatoria ATCC 35937]
 gi|325539491|gb|EGD11137.1| hypothetical protein XVE_0453 [Xanthomonas vesicatoria ATCC 35937]
          Length = 692

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             QL+  +   +A VS +AG+GKT + + R + L   +   + +L  T +   A  +   
Sbjct: 237 QRQLIDRNYNGAARVSGSAGTGKTVVALHRAVYLARKDED-ARVLLSTFSDTLANALRGN 295

Query: 82  VLEIITAWSHLSDEILSAEITKIQGK-------KPNKSDMSKARHLLITILETPGGLK 132
           +  +I     L + I  A +  I  +       KP      +   LL       GGLK
Sbjct: 296 LYRLIWNTPKLGERIDVAAMEAIGIRLYSAEFGKPAFVGRDEISALLRAAAAQVGGLK 353


>gi|63100352|gb|AAH94881.1| HELZ protein [Homo sapiens]
          Length = 1163

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQET-SRILICTHS 700

Query: 72  KAAA 75
            +AA
Sbjct: 701 NSAA 704


>gi|149173178|ref|ZP_01851809.1| Superfamily I DNA and RNA helicase [Planctomyces maris DSM 8797]
 gi|148847984|gb|EDL62316.1| Superfamily I DNA and RNA helicase [Planctomyces maris DSM 8797]
          Length = 688

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 46/181 (25%)

Query: 39  NAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           +AG+GKT  L+ R + L        + +L  T T                          
Sbjct: 269 SAGTGKTVALMHRAVYLARQLEDESARILVTTFT-------------------------- 302

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                           ++   H+     +  G ++V  +HA    I  +   +       
Sbjct: 303 ------------TNLSVTIKHHMQRLAPDVAGRIEVTNLHALARTICNRAGWKG------ 344

Query: 158 AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
            IA++E+  ++ +E   S    + L + EE++  +  +++ +  +  ET +  + S R  
Sbjct: 345 RIAEDEELAQIWDEVWLSYSDELPL-SKEEMQLEYELVIDPNGIDAEETYLGTVRSGRPR 403

Query: 218 L 218
           +
Sbjct: 404 I 404


>gi|88602785|ref|YP_502963.1| hypothetical protein Mhun_1511 [Methanospirillum hungatei JF-1]
 gi|88188247|gb|ABD41244.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 1275

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--- 63
             E+  + D +  +K +        R   +    G+GKTH L + V+ LL A        
Sbjct: 794 ALEYIRSADFM-PSKEKAFDTVLTRRMTLIWGPPGTGKTHFLAKSVVALLQAYKSAGKRF 852

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L    T  A   +   + + +T  + LSD++L  ++ ++  +  +  D+  ++ L  +
Sbjct: 853 RILVTAFTHTAIENLLWEIRDNLTD-AGLSDDVLLGKLDRLTEQSQDGFDLIDSQGLAAS 911


>gi|313605702|gb|EFR83061.1| ATP-dependent deoxyribonuclease subunit A [Listeria monocytogenes
          FSL F2-208]
          Length = 42

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHI 47
           T  +         +  V+A AGSGKT +
Sbjct: 14 WTDDQWKAIQAKGNNVLVAAAAGSGKTAV 42


>gi|308068436|ref|YP_003870041.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305857715|gb|ADM69503.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 632

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLL 66
             + +T+DL  +  ++QL      R   +   AGSGKT +LV R    +LA AHP   +L
Sbjct: 225 LHNIKTMDLHQENMAKQLG----DRHRLIRGVAGSGKTLVLVSR--AKMLAQAHPDWRIL 278

Query: 67  CL 68
            L
Sbjct: 279 VL 280


>gi|153812821|ref|ZP_01965489.1| hypothetical protein RUMOBE_03228 [Ruminococcus obeum ATCC 29174]
 gi|149831033|gb|EDM86122.1| hypothetical protein RUMOBE_03228 [Ruminococcus obeum ATCC 29174]
          Length = 685

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           Q +   ++ +   R   +   AGSGKT + + R+  LL     N   S +L L
Sbjct: 203 QKEQNAIIRNTKDRIMVIQGAAGSGKTSVALHRIAYLLYHDRENLKSSNILVL 255


>gi|291540901|emb|CBL14012.1| Type I site-specific restriction-modification system, R
           (restriction) subunit and related helicases [Roseburia
           intestinalis XB6B4]
          Length = 1193

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 22/114 (19%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRL--LLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            ++  +  +AGSGKT+    L  R+  L          T+  +T           R++  
Sbjct: 308 EKNYLIEHSAGSGKTNTIAWLAHRLASLHDRENKVIFDTVCIIT----------DRIVVD 357

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
               + +        + K+  +K    D++ A       L     + V TIH F
Sbjct: 358 RQLQNAVLSLDHKDGLIKVMDEKCTSKDLADA-------LNGNTKIIVTTIHKF 404


>gi|291226530|ref|XP_002733255.1| PREDICTED: MOV10-like 1-like [Saccoglossus kowalevskii]
          Length = 1042

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 9   EHSETID-LISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHP 62
           + SE +D  ++  + E ++A     +       V    G+GKT  + Q     L+     
Sbjct: 384 QWSEQLDTRLNPKQKEAVIAMTTPLNIHLPPILVIGPFGTGKTFTIAQ--ASKLILQQPN 441

Query: 63  STLLCLTHTKAAA 75
           + +L  TH+ +AA
Sbjct: 442 ARILICTHSNSAA 454


>gi|260576701|ref|ZP_05844687.1| UvrD/REP helicase [Rhodobacter sp. SW2]
 gi|259021068|gb|EEW24378.1| UvrD/REP helicase [Rhodobacter sp. SW2]
          Length = 696

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VS +AG+GKT + + R + L  A A+P ST+L  T ++A A  +  ++  ++     ++ 
Sbjct: 254 VSGSAGTGKTIVALHRAVHL--ARANPGSTVLLTTFSRALANSLRVKLASLVAGEPLIAA 311

Query: 95  EILSAEITKIQGK-------KPNKSDMSKARHLLITILETPGGLKVQT 135
            I+   I+ +          +P  +  +  R L+        G +  T
Sbjct: 312 RIVVKAISTVGYDLYSERFGQPQIAAPALIRSLITKAASEVEGHRFST 359


>gi|221222452|sp|P42694|HELZ_HUMAN RecName: Full=Probable helicase with zinc finger domain; AltName:
           Full=Down-regulated in human cancers protein
          Length = 1942

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|197304640|dbj|BAA06147.3| KIAA0054 [Homo sapiens]
          Length = 1943

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 643 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 700

Query: 72  KAAA 75
            +AA
Sbjct: 701 NSAA 704


>gi|120660430|gb|AAI30583.1| Helicase with zinc finger [Homo sapiens]
          Length = 1942

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|54792138|ref|NP_055692.2| probable helicase with zinc finger domain [Homo sapiens]
 gi|119609429|gb|EAW89023.1| helicase with zinc finger, isoform CRA_a [Homo sapiens]
 gi|119609430|gb|EAW89024.1| helicase with zinc finger, isoform CRA_a [Homo sapiens]
 gi|208967863|dbj|BAG72577.1| helicase with zinc finger [synthetic construct]
          Length = 1942

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|254520641|ref|ZP_05132697.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226914390|gb|EEH99591.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 699

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S     +  D+++  + EQ  ++ +D  +   V+  AGSGKT I + R+  LL
Sbjct: 186 SSNSGEKLKDIVNTIQKEQDEIIRADRNKVVVVNGVAGSGKTTIALHRIAYLL 238


>gi|72162725|ref|YP_290382.1| DNA helicase [Thermobifida fusca YX]
 gi|71916457|gb|AAZ56359.1| putative DNA helicase [Thermobifida fusca YX]
          Length = 711

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 21  KSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
            +++ LA  P       V    G+GKT + + RV  L         +L  + T A
Sbjct: 252 PTQRTLAYRPVFNGPVLVHGGPGTGKTVVALHRVKYLAEHLPLGGRILLTSFTNA 306


>gi|187778514|ref|ZP_02994987.1| hypothetical protein CLOSPO_02109 [Clostridium sporogenes ATCC
           15579]
 gi|187772139|gb|EDU35941.1| hypothetical protein CLOSPO_02109 [Clostridium sporogenes ATCC
           15579]
          Length = 766

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
              ++  D++S  + EQ  ++ +D  +   +  +AGSGKT I + R+  LL
Sbjct: 197 NRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALHRIAYLL 247


>gi|327184407|gb|AEA32852.1| type III restriction protein res subunit [Lactobacillus amylovorus
           GRL 1118]
          Length = 995

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 70/196 (35%), Gaps = 45/196 (22%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRL--LLANAH---PSTLLCLTHTKAAAAEMS 79
           L  +  +++  +  +AGSGKT+ +     RL  L  N +      ++ +T          
Sbjct: 298 LKINHTSQNYLIEHSAGSGKTNTIAWLASRLTSLHDNENNQIFDNIIIMT---------- 347

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            RV+        +    ++  + +      N +D+ +A      ++       V TI   
Sbjct: 348 DRVVVDRQLQQAMKRIDIADGVIQTMDDSCNSADLERALAGNTKVI-------VTTI--- 397

Query: 140 CEAIMQQFPLEANI-------TSH-----FA-IADEEQSKKLIEE--AKKSTLASIMLDN 184
                Q+FP   NI         +     FA I DE  S    +   A   TL++     
Sbjct: 398 -----QKFPYVLNIIKDAGKNGPNLKNKKFAVIIDEAHSSTAGKNMMAVTQTLSADEEKE 452

Query: 185 NEELKKAFYEILEISN 200
           + +L+    + ++ S 
Sbjct: 453 DLDLQDILTQEIKSSG 468


>gi|270003675|gb|EFA00123.1| hypothetical protein TcasGA2_TC002939 [Tribolium castaneum]
          Length = 2951

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 71/207 (34%), Gaps = 24/207 (11%)

Query: 17   ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTK 72
             +Q++     A+     + +    G+GKT  L  ++   LL N       + +L + +T 
Sbjct: 1452 FNQSQLRAFRAALTQEFSVIQGPPGTGKTF-LGLKIAHTLLQNQAIWFKKTPMLVICYTN 1510

Query: 73   AAAAEMSH-------RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
             A  +          R++ I     + +    +    K +            + LL+ I 
Sbjct: 1511 HALDQFLEGLALATDRIIRIGGQSRNQNVAKFNLRNIKFRTNPAVLQQRHGVKVLLLQIQ 1570

Query: 126  ETPGGLK-VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                 LK +   H+     ++ F +  ++  +F       +           L  ++ + 
Sbjct: 1571 NITENLKEIDFYHS-----IRDFKVFIDVIPNFI------TTWFHRATIDELLDWLLPEY 1619

Query: 185  NEELKKAFYEILEISNDEDIETLISDI 211
              E   +  E+    +  +++  ++++
Sbjct: 1620 ENEDLDSTNEVKSPRSVAEVQDKVANL 1646


>gi|91079004|ref|XP_974762.1| PREDICTED: similar to Ab1-133 [Tribolium castaneum]
          Length = 1990

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 71/207 (34%), Gaps = 24/207 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTK 72
            +Q++     A+     + +    G+GKT  L  ++   LL N       + +L + +T 
Sbjct: 491 FNQSQLRAFRAALTQEFSVIQGPPGTGKTF-LGLKIAHTLLQNQAIWFKKTPMLVICYTN 549

Query: 73  AAAAEMSH-------RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
            A  +          R++ I     + +    +    K +            + LL+ I 
Sbjct: 550 HALDQFLEGLALATDRIIRIGGQSRNQNVAKFNLRNIKFRTNPAVLQQRHGVKVLLLQIQ 609

Query: 126 ETPGGLK-VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
                LK +   H+     ++ F +  ++  +F       +           L  ++ + 
Sbjct: 610 NITENLKEIDFYHS-----IRDFKVFIDVIPNFI------TTWFHRATIDELLDWLLPEY 658

Query: 185 NEELKKAFYEILEISNDEDIETLISDI 211
             E   +  E+    +  +++  ++++
Sbjct: 659 ENEDLDSTNEVKSPRSVAEVQDKVANL 685


>gi|290958510|ref|YP_003489692.1| hypothetical protein SCAB_40691 [Streptomyces scabiei 87.22]
 gi|260648036|emb|CBG71144.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 1845

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 19  QTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            +  EQ   ++  R      V    G+GKTH +   V  LL      + +L  +HT  A 
Sbjct: 375 PSNDEQRTIAERLRDRDLVVVQGPPGTGKTHTIANLVTDLLAHG---NRVLITSHTARAL 431

Query: 76  AEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             +  ++   I     S   D +   E+ +      ++     +R     I E    L+
Sbjct: 432 KVLKDKLPVGIRELCVSRTDDGVGQLELEQSVKAILDRQGDFSSRAHRRRIQEHEERLR 490


>gi|322807223|emb|CBZ04797.1| uvrd/Rep helicase family protein [Clostridium botulinum H04402 065]
          Length = 763

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
              ++  D++S  + EQ  ++ +D  +   +  +AGSGKT I + R+  LL
Sbjct: 197 NRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALHRIAYLL 247


>gi|299541863|ref|ZP_07052186.1| YvgS [Lysinibacillus fusiformis ZC1]
 gi|298725601|gb|EFI66242.1| YvgS [Lysinibacillus fusiformis ZC1]
          Length = 767

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 7   FQEHSETIDLISQT-KSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL---LANA 60
            Q  +E I  I  T ++EQ        +R   V   AGSGKT + +QRV  LL       
Sbjct: 198 AQNANEHIRSIVATIQAEQNKIIRHVNSRYLIVEGVAGSGKTAVALQRVAYLLYRYRDEM 257

Query: 61  HPSTLLCLT 69
               +L +T
Sbjct: 258 TADQILLIT 266


>gi|255655342|ref|ZP_05400751.1| hypothetical protein CdifQCD-2_06497 [Clostridium difficile
           QCD-23m63]
 gi|296451329|ref|ZP_06893068.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296880319|ref|ZP_06904283.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296259826|gb|EFH06682.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296428684|gb|EFH14567.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 593

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL-THTKAAAAEMSHRVLEIITAWS 90
            +  +   +G GKT I++ R ++L  A  +P   L + THTK    E+  R+  +    +
Sbjct: 207 GNTLIEGGSGIGKTAIMLSRAIKL--AKVYPHHKLIIFTHTKQLRNELRERIELLYKDNN 264

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           +L     S+ I K+  K     D +  ++         
Sbjct: 265 NLEVHTFSSFIFKLAKKFNLIVDYNMLKNDYEKAFNNL 302


>gi|195056345|ref|XP_001995071.1| GH22948 [Drosophila grimshawi]
 gi|193899277|gb|EDV98143.1| GH22948 [Drosophila grimshawi]
          Length = 1271

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            +  LA        +    G+GKT  + + + +L +     + +L L  +  A  E++ R
Sbjct: 622 QQIALADKLPAPYIILGPPGTGKTATICEAIYQLYVERPE-THILVLAGSNTACDEIALR 680

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
           +L  I   ++     L    +    ++ +  D
Sbjct: 681 LLRCIAKVNNGQSRPLVRVFSASCDRRIDGID 712


>gi|15790495|ref|NP_280319.1| DNA helicase [Halobacterium sp. NRC-1]
 gi|10580995|gb|AAG19799.1| DNA helicase [Halobacterium sp. NRC-1]
          Length = 821

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 21/171 (12%)

Query: 15  DLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           DLI    ++      A +    A V    G+GKT+ +   V   +        +L    T
Sbjct: 446 DLIPNNDAQNAAVNRALNAEDFALVHGPPGTGKTYTIATLVQAFVARG---DRVLVSAFT 502

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH----LLITILET 127
             A       V   + A      E +   +    G + +  D+   R          L +
Sbjct: 503 NRA-------VDNALDALRQQGHEDI-VRVGTETGVRADMQDLRLDRSGDPGERAAALRS 554

Query: 128 PGGLKVQTIHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
              +   T  A C   I+++   +  +    +   E  +   I    +  L
Sbjct: 555 APVVAATT--ATCGSRILRELEFDVVLVDEASQLTEPDTLAAINRGARFVL 603


>gi|332026991|gb|EGI67087.1| Putative helicase with zinc finger domain [Acromyrmex echinatior]
          Length = 909

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 53/228 (23%)

Query: 18  SQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           S    EQ  A          +    +    G+GKT  +   +LR+L+ N + + +L  TH
Sbjct: 431 SPLNHEQKQAVTVITLSIKTSPPVLLLGPFGTGKTFTIAH-MLRMLVQNTN-NRILLCTH 488

Query: 71  TKAAA----AEMSH--------------RVLEIITAWSHLSDEILSAEITKIQG--KKPN 110
           + +AA     E  H              R+   + + + +   +    +    G  + P 
Sbjct: 489 SNSAADLYIKEFFHIWYNKDKDIRLKPVRIYYKLRSLNTVHPTVQKYCLMDEHGRFRDPV 548

Query: 111 KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
            +D+     L++T L T            C        +   ++    + DE       E
Sbjct: 549 AADLQNC-GLIVTTLATSS----------CL-------MSLKLSPTHIVIDEAAQAMECE 590

Query: 171 EAKKSTLAS-----IMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213
                TLA+     ++  +  +L    Y IL       I +L+  + +
Sbjct: 591 ALIALTLANRETRLLLAGDQMQLAPEIYSILANERGLGI-SLLERMYA 637


>gi|153941363|ref|YP_001392184.1| putative helicase [Clostridium botulinum F str. Langeland]
 gi|152937259|gb|ABS42757.1| putative helicase [Clostridium botulinum F str. Langeland]
          Length = 763

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
              ++  D++S  + EQ  ++ +D  +   +  +AGSGKT I + R+  LL
Sbjct: 197 NRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALHRIAYLL 247


>gi|72382485|ref|YP_291840.1| DNA helicase/exodeoxyribonuclease V subunit alpha [Prochlorococcus
           marinus str. NATL2A]
 gi|72002335|gb|AAZ58137.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Prochlorococcus
           marinus str. NATL2A]
          Length = 573

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ID ++  KSEQ+          +S   G+GKT  ++Q +L  L  N   S +     T  
Sbjct: 143 IDAVNLVKSEQI--------ILLSGGPGTGKTSTILQMLLEALTRNPTLS-IAMAAPTGK 193

Query: 74  AAAEMSHRVLEIITAWSHLSDEIL----SAEITKIQGKKPNKSDMSKAR--HLLITILET 127
           AA ++   +   I  +     + L    S  + K     PN    +  R   L + +++ 
Sbjct: 194 AAKKLKDTIQAGIEDFDDPIKDKLSNIPSKTLHKWLEAGPNGFRRNSQRLLKLDLIVIDE 253

Query: 128 PGGLKVQTIHAF-------CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
              + + TI+         C+ I+              + D +Q   +        L   
Sbjct: 254 MSMVDLSTINGLLDALTKSCQIIL--------------VGDPDQLLPIGSGGIWQILQE- 298

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
             +     +    ++ +   ++    L+ +I+ ++
Sbjct: 299 -KETKTNFQSNSVKLTKSYRNKGDIALLRNILKDK 332


>gi|94152450|ref|YP_581857.1| UvrD Superfamily I DNA and RNA helicase [Cupriavidus
          metallidurans CH34]
 gi|93358820|gb|ABF12907.1| UvrD Superfamily I DNA and RNA helicase [Cupriavidus
          metallidurans CH34]
          Length = 645

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72
          T  +    +   R   V A  G+GKT  L +  L        P   +L LT+TK
Sbjct: 5  THEQLTAINSAVRRLVVQACPGAGKTFTLREYAL------VRPSERILYLTYTK 52


>gi|310765021|gb|ADP09971.1| hypothetical protein EJP617_02900 [Erwinia sp. Ejp617]
          Length = 877

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 29  DPTRSAWVSANAGSGKT-HILVQRVLRLLLANAHPSTLLCLTH---TKAAAAEMSHRVLE 84
           D      + A  GSGKT   L       LLA     +++       T+A A  M  R+  
Sbjct: 299 DRPGLTLIEAPTGSGKTEAALA--YAWRLLAGGQADSII---FALPTQATANAMYARLER 353

Query: 85  IITAWSHLSDEILSA 99
           + T      + IL+ 
Sbjct: 354 LATQLFEQPNFILAH 368


>gi|169634533|ref|YP_001708269.1| exonuclease V, alpha subunit [Acinetobacter baumannii SDF]
 gi|169153325|emb|CAP02436.1| exonuclease V, alpha subunit [Acinetobacter baumannii]
          Length = 583

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 12  ETIDLISQT-KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           E +DL++   +   L        + ++   G+GKT+ L  R++ +L        +     
Sbjct: 119 EHLDLLTDPHQRTALQMVTRQSLSIITGGPGTGKTYTLA-RIIAVLSQAIPHIRVAMAAP 177

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           T  AA  M   +         L   ++S E+     +  ++
Sbjct: 178 TGKAAQRMQEALQNSFNDPKLLESGLMSDELRNQSTQTIHR 218


>gi|168207165|ref|ZP_02633170.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens E str. JGS1987]
 gi|170661460|gb|EDT14143.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens E str. JGS1987]
          Length = 763

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTL 65
           ++  D+++  + EQ  ++ +       +  +AGSGKT + + R+  LL           +
Sbjct: 197 TKLKDVVATIQKEQNDIIRAPKNSPLIIQGSAGSGKTTVALHRLAYLLYRYKETITGEDI 256

Query: 66  LCL 68
           L +
Sbjct: 257 LVV 259


>gi|170573366|ref|XP_001892441.1| hypothetical protein [Brugia malayi]
 gi|158602007|gb|EDP38728.1| conserved hypothetical protein [Brugia malayi]
          Length = 1632

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPST---LLCLT 69
            +   +   L  +     A +    G+GKT  L + ++R+LL N    +P     ++ + 
Sbjct: 371 GLDDAQRNALCYALTHELALIQGPPGTGKTF-LGRLIIRILLENITMWNPERINPIIVVC 429

Query: 70  HTKAA 74
            T  A
Sbjct: 430 FTNHA 434


>gi|110801600|ref|YP_698907.1| ATP-dependent DNA helicase UvrD [Clostridium perfringens SM101]
 gi|110682101|gb|ABG85471.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens SM101]
          Length = 763

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTL 65
           ++  D+++  + EQ  ++ +       +  +AGSGKT + + R+  LL           +
Sbjct: 197 TKLKDVVATIQKEQNDIIRAPKNSPLIIQGSAGSGKTTVALHRLAYLLYRYKETITGEDI 256

Query: 66  LCL 68
           L +
Sbjct: 257 LVV 259


>gi|187607141|ref|NP_001120596.1| helicase with zinc finger [Xenopus (Silurana) tropicalis]
 gi|171846398|gb|AAI61631.1| helz protein [Xenopus (Silurana) tropicalis]
          Length = 1742

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 12  ETIDL-ISQTKSEQLLASDPTRS-----AWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           E +D  ++  + E +LA     S       +    G+GKT  L Q V  +L      + +
Sbjct: 636 ELLDPRLNAKQKEAILAITTPLSVQLPPILIIGPYGTGKTFTLAQAVKHILKQQE--TRV 693

Query: 66  LCLTHTKAAA 75
           L  TH+ +AA
Sbjct: 694 LICTHSNSAA 703


>gi|149054620|gb|EDM06437.1| helicase with zinc finger domain (predicted) [Rattus norvegicus]
          Length = 1783

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 16  LISQTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           L ++ K   L  + P         +    G+GKT  L Q V  +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLCIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|290981792|ref|XP_002673615.1| Zinc-finger domain-containing protein [Naegleria gruberi]
 gi|284087200|gb|EFC40871.1| Zinc-finger domain-containing protein [Naegleria gruberi]
          Length = 1991

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP--STLLCLTHTKA 73
            +  ++++ +      R + V    G GKT   ++ + +LL ++       L+C+T+T  
Sbjct: 851 FLDPSQNKAIQHVMRNRVSIVIGPPGCGKTFTGIE-IAKLLKSHPDMKNRQLICITYTNH 909

Query: 74  AAAEMSHRVLEIITAW-SHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           A       + + +     +  D +     +K Q +K    ++SK R+L
Sbjct: 910 A-------LDQFLEGLIDYFPDIVRIGSRSKSQNEKLLNRNLSKMRYL 950


>gi|169342887|ref|ZP_02863918.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens C str. JGS1495]
 gi|169299144|gb|EDS81216.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens C str. JGS1495]
          Length = 763

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTL 65
           ++  D+++  + EQ  ++ +       +  +AGSGKT + + R+  LL           +
Sbjct: 197 TKLKDVVATIQKEQNDIIRAPKNSPLIIQGSAGSGKTTVALHRLAYLLYRYKETITGEDI 256

Query: 66  LCL 68
           L +
Sbjct: 257 LVV 259


>gi|147866733|emb|CAN83068.1| hypothetical protein VITISV_014567 [Vitis vinifera]
          Length = 877

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
             G+GKT  LV+ +L+L L   + + +L    + +AA  +  R+L
Sbjct: 420 PPGTGKTKTLVEAILQLYLTQKN-TRILVCAPSNSAADHLLERLL 463


>gi|220930782|ref|YP_002507691.1| superfamily I DNA helicase [Clostridium cellulolyticum H10]
 gi|220001110|gb|ACL77711.1| superfamily I DNA helicase [Clostridium cellulolyticum H10]
          Length = 760

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLL---LANAH 61
               +   +++S  + EQ         +   V   AGSGKT I + R+  L+     N  
Sbjct: 184 ANAENRLKEIVSTIQEEQNRIVRAPMWKPLIVQGVAGSGKTTIALHRIAYLIYTFEKNFD 243

Query: 62  PSTLLCL 68
           P   + +
Sbjct: 244 PENFMII 250


>gi|49484937|ref|YP_042158.1| putative type I restriction enzyme protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|49243380|emb|CAG41797.1| putative type I restriction enzyme protein [Staphylococcus aureus
           subsp. aureus MSSA476]
          Length = 1012

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 42/220 (19%)

Query: 30  PTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHR-VL 83
           P ++  +  +AGSGK++    L   +  L      P  S+++ +T           R VL
Sbjct: 295 PGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVT----------DRTVL 344

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           +     + +S E    ++  I   K ++         L T +     + + T        
Sbjct: 345 DRQLQNTLMSFEHTVGQVETIGDNKTSQD--------LKTAINDQKKIIITT-------- 388

Query: 144 MQQFPL---EANITSH--FAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKK--AFYEI 195
           +Q+FP+   E + T+   FAI  DE  S +    A+K  L   + D    LK+   F E 
Sbjct: 389 LQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQK--LKHALADKEASLKEYQEFEES 446

Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
           +E  + +D + ++  ++S      L FF F+   + K IE
Sbjct: 447 VEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIE 486


>gi|170760161|ref|YP_001788226.1| putative helicase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407150|gb|ACA55561.1| putative helicase [Clostridium botulinum A3 str. Loch Maree]
          Length = 763

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
              ++  D++S  + EQ  ++ +D  +   +  +AGSGKT I + R+  LL
Sbjct: 197 NRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALHRIAYLL 247


>gi|198423919|ref|XP_002121871.1| PREDICTED: similar to zinc finger, NFX1-type containing 1 [Ciona
           intestinalis]
          Length = 1962

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPST--LLCLTHTKA 73
           +  ++   +  +     A +    G+GKT++ L  +V+R+LLAN  P    +L + +T  
Sbjct: 535 MDDSQRNAMQVALTNELALIQGPPGTGKTYVGL--KVMRVLLANMKPRKHPILVVCYTNH 592

Query: 74  A 74
           A
Sbjct: 593 A 593


>gi|302063686|ref|ZP_07255227.1| hypothetical protein PsyrptK_27199 [Pseudomonas syringae pv.
          tomato K40]
          Length = 48

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          + L+  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MPLMQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 36


>gi|226950334|ref|YP_002805425.1| putative helicase [Clostridium botulinum A2 str. Kyoto]
 gi|226842263|gb|ACO84929.1| putative helicase [Clostridium botulinum A2 str. Kyoto]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
              ++  D++S  + EQ  ++ +D  +   +  +AGSGKT I + R+  LL
Sbjct: 197 NRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALHRIAYLL 247


>gi|168179338|ref|ZP_02614002.1| putative helicase [Clostridium botulinum NCTC 2916]
 gi|182669873|gb|EDT81849.1| putative helicase [Clostridium botulinum NCTC 2916]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
              ++  D++S  + EQ  ++ +D  +   +  +AGSGKT I + R+  LL
Sbjct: 197 NRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALHRIAYLL 247


>gi|148380859|ref|YP_001255400.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153931694|ref|YP_001385166.1| putative helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153937610|ref|YP_001388635.1| putative helicase [Clostridium botulinum A str. Hall]
 gi|148290343|emb|CAL84468.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927738|gb|ABS33238.1| putative helicase [Clostridium botulinum A str. ATCC 19397]
 gi|152933524|gb|ABS39023.1| putative helicase [Clostridium botulinum A str. Hall]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
              ++  D++S  + EQ  ++ +D  +   +  +AGSGKT I + R+  LL
Sbjct: 197 NRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALHRIAYLL 247


>gi|329936993|ref|ZP_08286622.1| DNA helicase II [Streptomyces griseoaurantiacus M045]
 gi|329303600|gb|EGG47485.1| DNA helicase II [Streptomyces griseoaurantiacus M045]
          Length = 716

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
            +  ++ +    +  +  A V+   G+GK+ + + RV  LL        +L  T+T A
Sbjct: 251 FLHPSQRKVAYRASYSGPAQVTGGPGTGKSVVALHRVKHLLGHLREGDRILLTTYTNA 308


>gi|251791799|ref|YP_003006520.1| hypothetical protein Dd1591_4250 [Dickeya zeae Ech1591]
 gi|247540420|gb|ACT09041.1| protein of unknown function DUF450 [Dickeya zeae Ech1591]
          Length = 1027

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 74/224 (33%), Gaps = 50/224 (22%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78
              A  P ++  +  +AGSGKT+    L  R+  L  ++ H     ++ +T         
Sbjct: 298 AARAEGPGQNYLIQHSAGSGKTNSISWLSHRLASLHNSDDHKVFDCVIVIT--------- 348

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R          + D  L   I +I+  +     + +    L   L     + V T   
Sbjct: 349 -DR---------QVLDRQLQDAIYQIEHAQGVVKAIDQDSKQLAEALIDGTKIVVTT--- 395

Query: 139 FCEAIMQQFPLEA-NI---TSHFAIADEEQSKKLIEEAKKS---------TLASIMLDNN 185
                +Q+FP     +       ++ D +++ K   +  ++          +        
Sbjct: 396 -----LQKFPFVLRGLLHAAGAESVDDPDEATKAKAKIWEAEIGKRRYAVIVDEAHSSQT 450

Query: 186 EELKKAFYEILEISN-----DEDIETLISDIISNRTALKLIFFF 224
            E  +    IL         + D E  ++ +I++R     + FF
Sbjct: 451 GETARELKAILGAKTGGDDEETDWEDGLNQVIASRGRQPNLSFF 494


>gi|168217990|ref|ZP_02643615.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens NCTC 8239]
 gi|182379978|gb|EDT77457.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens NCTC 8239]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTL 65
           ++  D+++  + EQ  ++ +       +  +AGSGKT + + R+  LL           +
Sbjct: 197 TKLKDVVATIQKEQNDIIRAPKNSPLIIQGSAGSGKTTVALHRLAYLLYRYKETITGEDI 256

Query: 66  LCL 68
           L +
Sbjct: 257 LVV 259


>gi|168181588|ref|ZP_02616252.1| putative helicase [Clostridium botulinum Bf]
 gi|237796358|ref|YP_002863910.1| putative helicase [Clostridium botulinum Ba4 str. 657]
 gi|182675093|gb|EDT87054.1| putative helicase [Clostridium botulinum Bf]
 gi|229261408|gb|ACQ52441.1| putative helicase [Clostridium botulinum Ba4 str. 657]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
              ++  D++S  + EQ  ++ +D  +   +  +AGSGKT I + R+  LL
Sbjct: 197 NRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALHRIAYLL 247


>gi|21230527|ref|NP_636444.1| putative DNA helicase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|21112098|gb|AAM40368.1| putative DNA helicase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 692

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             QL+  +   +A VS +AG+GKT + + R + L   +   + +L  T +   A  +   
Sbjct: 237 QRQLVERNYNGAARVSGSAGTGKTVVALHRAVHLAHKDED-ARVLLSTFSDTLANALRGN 295

Query: 82  VLEIITAWSHLSDEILSAEITKIQGK-------KPNKSDMSKARHLLITILETPGGLKVQ 134
           +  +I     L + I  A +  I  +       KP  +   +   LL        GLK  
Sbjct: 296 LYRLIWNTPKLGERIDVAAMEAIGIRLYSAEFGKPVFASRDEISTLLKAAAMQVDGLKAN 355

Query: 135 T 135
           T
Sbjct: 356 T 356


>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
 gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 25/163 (15%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           S  I   +  + + + A    R     A  G+GKT   +  +L  L  +A     L +T 
Sbjct: 19  SHGIGKPTPIQEQAIPAVMEGRDIIAQAQTGTGKTFAFILPILEKLDPDAVHIQALIVTP 78

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ ++ + +   +   D++   E+  + G +     ++K +  +  ++ TPG 
Sbjct: 79  TR----ELALQITDEVQKLTAGDDDL---EVLAVYGGQDVDKQLNKLKKKVQIVVGTPGR 131

Query: 131 L--KV--QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169
           L   +  +TI       + Q        + F + DE      I
Sbjct: 132 LLDHIKRKTID------LSQ--------ADFLVLDEADQMLHI 160


>gi|297194696|ref|ZP_06912094.1| UvrD/REP helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152399|gb|EDY64272.2| UvrD/REP helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 770

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 21  KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTH-TKAAA 75
             ++ LA+     SA V+   G+GKT + + RV R L+    P     +L  T  T  AA
Sbjct: 254 PEQRRLATTAFKGSAKVTGGPGTGKTVVALHRV-RHLVDRLPPGRTRPVLLTTFNTNLAA 312

Query: 76  AEMSHR 81
             + HR
Sbjct: 313 D-LKHR 317


>gi|182626100|ref|ZP_02953861.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens D str. JGS1721]
 gi|177908621|gb|EDT71142.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens D str. JGS1721]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTL 65
           ++  D+++  + EQ  ++ +       +  +AGSGKT + + R+  LL           +
Sbjct: 197 TKLKDVVATIQKEQNDIIRAPKNSPLIIQGSAGSGKTTVALHRLAYLLYRYKETITGEDI 256

Query: 66  LCL 68
           L +
Sbjct: 257 LVV 259


>gi|170757744|ref|YP_001782540.1| putative helicase [Clostridium botulinum B1 str. Okra]
 gi|169122956|gb|ACA46792.1| putative helicase [Clostridium botulinum B1 str. Okra]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
              ++  D++S  + EQ  ++ +D  +   +  +AGSGKT I + R+  LL
Sbjct: 197 NRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALHRIAYLL 247


>gi|240172136|ref|ZP_04750795.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478]
          Length = 1051

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 30/179 (16%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V    G+GK+ +L +  +  + A A P ++L LT                      L   
Sbjct: 23  VLGGPGTGKSSLLAEAAVAHIAAGADPESVLLLT------------------GSGRLGIR 64

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             SA  + +       S  S  R  L           V+T+H +  A++++         
Sbjct: 65  ARSALTSALLRSSRIGSGRSAVREPL-----------VRTVHGYAYALLRRNAERTGEGP 113

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
              +    +   +I E     L       +   +  +  +       ++  L++     
Sbjct: 114 -PRLLTSAEQDAIIRELLAGDLEDAAASQSAWPQHLWPALSTAGFANELRNLLARCFER 171


>gi|50543164|ref|XP_499748.1| YALI0A04279p [Yarrowia lipolytica]
 gi|49645613|emb|CAG83672.1| YALI0A04279p [Yarrowia lipolytica]
          Length = 527

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 19/97 (19%)

Query: 16  LISQTKSEQLLA-----SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            I +    Q  A     +     + +    G+GKT  +V  +  LL + + P     L  
Sbjct: 213 YIGKLNRSQAQAVYGSLNTRGGFSLIQGPPGTGKTSTIVSIIRELLESGSRP-----LMF 267

Query: 71  ---TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKI 104
              + AA  E++ R+ +      H  DE L  +I +I
Sbjct: 268 CAPSNAAVDELTKRLKK------HFLDEKLDYKILRI 298


>gi|149200937|ref|ZP_01877912.1| hypothetical protein RTM1035_14967 [Roseovarius sp. TM1035]
 gi|149145270|gb|EDM33296.1| hypothetical protein RTM1035_14967 [Roseovarius sp. TM1035]
          Length = 446

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 39  NAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH----- 91
            AGSGKT  +V    +L+  +A      +L LT    A      R+   + A +      
Sbjct: 9   PAGSGKTFSMVAHARQLIENDALGEGQRMLALTFMNGA----RRRLTSSLNAEASFRRRF 64

Query: 92  --LSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L+ +  +  + K +  K       +A+ L
Sbjct: 65  DCLTFDSFAQSLAKRRRAKLTDEMRQQAQEL 95


>gi|146306167|ref|YP_001186632.1| superfamily I DNA/RNA helicase [Pseudomonas mendocina ymp]
 gi|145574368|gb|ABP83900.1| Superfamily I DNA and RNA helicase and helicase subunits-like
           protein [Pseudomonas mendocina ymp]
          Length = 914

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 73/229 (31%), Gaps = 30/229 (13%)

Query: 21  KSEQLLASDPTRSA---WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
              QL+A +   SA    +    G+GKT  ++  +  +LL      T+  L++  AA   
Sbjct: 181 NESQLMAVEQAFSAQISLIEGPPGTGKTQTILNILANILLRG---QTVAVLSNNNAAVEN 237

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  ++ +    +                  +P  S   +    +  I      LK     
Sbjct: 238 VYEKLGKSGLDYLVAKLGNRDNREDFFAQVQPVPSGEPEPAPPMEEIQAVLERLK----- 292

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-L 196
                ++ +  L A + +     DE          ++  L     DN  +   +     L
Sbjct: 293 ----RLLHEHNLAAQLKAE---IDELN-------IERRYLEQWQKDNGAQPTASLARYRL 338

Query: 197 EISNDEDIETLISDIISNR----TALKLIFFFFSYLWRRKIIEKSLWSI 241
                 D+   ++ +   R       +L+F F  +  +    E++  S 
Sbjct: 339 SPRETTDLMAYLAHLTGQRLRLKDRFELLFKFRIFRAKPLADEEARLSF 387


>gi|110799377|ref|YP_696306.1| ATP-dependent DNA helicase UvrD [Clostridium perfringens ATCC
           13124]
 gi|110674024|gb|ABG83011.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens ATCC 13124]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTL 65
           ++  D+++  + EQ  ++ +       +  +AGSGKT + + R+  LL           +
Sbjct: 197 TKLKDVVATIQKEQNDIIRAPKNSPLIIQGSAGSGKTTVALHRLAYLLYRYKETITGEDI 256

Query: 66  LCL 68
           L +
Sbjct: 257 LVV 259


>gi|150017991|ref|YP_001310245.1| type III restriction protein, res subunit [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904456|gb|ABR35289.1| type III restriction protein, res subunit [Clostridium beijerinckii
           NCIMB 8052]
          Length = 993

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 49/208 (23%)

Query: 33  SAWVSANAGSGKTHIL---VQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEIIT 87
           +  +  +AGSGKT+ +     R+  L     +P   +++ +T           R      
Sbjct: 291 NYLIQHSAGSGKTNTIAWSAHRLSSLHDEENNPIFDSVIVIT----------DR------ 334

Query: 88  AWSHLSDEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI-- 143
               + D+ L   I +++ KK    K D  K    L   +E+   + + TI  F  A+  
Sbjct: 335 ---KVLDKQLQDAIYQLEHKKGLVVKIDDKKNSSDLAKAIESGVKIIITTIQKFPYALQK 391

Query: 144 -----MQQFPLEANITSHFAIADEEQSKKLIEE--AKKSTLASIMLDNNEELKKAFYEIL 196
                 +++ +         I DE  S    E   A K TLA   L+   + +    +  
Sbjct: 392 IESLEKRKYAV---------IIDEAHSSTAGENMGALKETLAGKTLEEAAKQESEEEKNE 442

Query: 197 EISNDEDIETLISDIISNRTALKLIFFF 224
           + S D+     ++D+I  RT L  + FF
Sbjct: 443 KSSMDK-----MTDLIEKRTDLGNVSFF 465


>gi|18310601|ref|NP_562535.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens str. 13]
 gi|168213588|ref|ZP_02639213.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens CPE str. F4969]
 gi|18145282|dbj|BAB81325.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170714875|gb|EDT27057.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens CPE str. F4969]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTL 65
           ++  D+++  + EQ  ++ +       +  +AGSGKT + + R+  LL           +
Sbjct: 197 TKLKDVVATIQKEQNDIIRAPKNSPLIIQGSAGSGKTTVALHRLAYLLYRYKETITGEDI 256

Query: 66  LCL 68
           L +
Sbjct: 257 LVV 259


>gi|312971690|ref|ZP_07785865.1| hypothetical protein EC182770_2201 [Escherichia coli 1827-70]
 gi|310336287|gb|EFQ01487.1| hypothetical protein EC182770_2201 [Escherichia coli 1827-70]
          Length = 472

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 43/119 (36%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           ++A AG GKT I+   +   L     P  +L LTHT A    +  R              
Sbjct: 15  ITAPAGCGKTQIIADTLA--LHTGTRP--VLILTHTNAGVTTLRLR-------------- 56

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                    +     +    ++ TI  F   ++  FP  + + 
Sbjct: 57  -------------------------MQRAGVSAVAYRIATIDGFAMRLVAMFPARSGLN 90


>gi|291461076|ref|ZP_06026778.2| DNA helicase [Fusobacterium periodonticum ATCC 33693]
 gi|291379124|gb|EFE86642.1| DNA helicase [Fusobacterium periodonticum ATCC 33693]
          Length = 1490

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 9/123 (7%)

Query: 16  LISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              +T +EQ+       S     V    G+GKTH +   +   L        +L  + TK
Sbjct: 358 FTKETNNEQIEIIKSLYSHRAVVVQGPPGTGKTHTIANLLGHFLAEG---KNVLITSQTK 414

Query: 73  AAAAEMSHRV---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A   +  ++   ++ +       D        +   +K    ++   ++    I +   
Sbjct: 415 KALDVLKEKIPTDIQDLCISMLDDDSSDLGNSVETISEKLGYLNLENLKNEYQEIEKQRN 474

Query: 130 GLK 132
            LK
Sbjct: 475 ELK 477


>gi|37522306|ref|NP_925683.1| hypothetical protein gll2737 [Gloeobacter violaceus PCC 7421]
 gi|35213306|dbj|BAC90678.1| gll2737 [Gloeobacter violaceus PCC 7421]
          Length = 707

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 46/167 (27%)

Query: 12  ETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           + I  + +   EQ    D   +    V    G+GK+ + + RV +LL A   P  +L  T
Sbjct: 221 DLIAFLLKLDPEQEKLRDFGSSGPILVKGGPGTGKSTLALYRVKKLLDAGHSP--VLFTT 278

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           +T A           ++   + L +++L                                
Sbjct: 279 YTNA-----------LVNYSAQLLEQLLGQNAAT-------------------------A 302

Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176
           G +V TI      +   +   +       I ++ ++  L+EEA K+T
Sbjct: 303 GAEVSTID----RM--AYQYFSQTYGKPHIVEDNEAVVLLEEALKTT 343


>gi|325125910|gb|ADY85240.1| DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 709

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 20  TKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            K +  +A +   S    V    G+GKTH +   +   L       ++L  +++  A + 
Sbjct: 379 NKEQLQIAREIQHSDKVLVQGPPGTGKTHTIANLIGNFLAQG---RSILVSSYSSKALSV 435

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
           +  ++ E + +      +  + ++ +             +  L     E   
Sbjct: 436 LKDKLPEELQSLCVAVFDDSNKDMERSIDGISEHMSNESSEGLRAKAKEQAN 487


>gi|227539752|ref|ZP_03969801.1| DNA helicase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240394|gb|EEI90409.1| DNA helicase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 408

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 66/190 (34%), Gaps = 32/190 (16%)

Query: 3   YHNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +  S QE S ++D +++ + + +    +      V    G+GKT  LV  +  LL    +
Sbjct: 169 HIVSDQEIS-SMDGLNEYQLKAVNQIVNSPHLTIVHGPPGTGKTTTLVHGIKALLQK--Y 225

Query: 62  PSTLLCLTHTKAAAAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
           P  +L    +  A   ++ ++ E       I     +S+++    +       P + ++ 
Sbjct: 226 PDQILVTAPSNTAVDLLTEKLHETGVRVVRIGNPVKVSEQLHELTLDGKLESHPMQKELK 285

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
             R                        + +    +     +F  A+ +Q K L +EAK  
Sbjct: 286 TIRKK--------------------ADVFRDMAKK--YKRNFGKAERDQRKALFQEAKNL 323

Query: 176 TLASIMLDNN 185
              +  +   
Sbjct: 324 MKEAEQIAQY 333


>gi|194747894|ref|XP_001956384.1| GF24619 [Drosophila ananassae]
 gi|190623666|gb|EDV39190.1| GF24619 [Drosophila ananassae]
          Length = 2088

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
           ++  + E + A     S       +    G+GKT+ L Q + +LL   A P   +L  TH
Sbjct: 830 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLL---AQPEAKILICTH 886

Query: 71  TKAAA 75
           + +AA
Sbjct: 887 SNSAA 891


>gi|170092415|ref|XP_001877429.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647288|gb|EDR11532.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 2289

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +  +++E ++ +     A +    G+GK++  V+ +LR+L  +A P  +L +  T  A
Sbjct: 728 LDPSQAEAVVDALTREVALIQGPPGTGKSYTGVE-LLRILNQHAKP--ILMIAFTNHA 782


>gi|310780566|ref|YP_003968898.1| Peptidase S24/S26A/S26B, conserved region [Ilyobacter polytropus
          DSM 2926]
 gi|309749889|gb|ADO84550.1| Peptidase S24/S26A/S26B, conserved region [Ilyobacter polytropus
          DSM 2926]
          Length = 810

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTL-LCLTHTK 72
          +    + E++  + P+    V   AGSGKT + V R+  LL      P  + L +T+ K
Sbjct: 1  MHLNKEQEKISYTKPSGPMLVKGIAGSGKTTVGVNRIPFLLNNYCFEPDDMVLLMTYNK 59


>gi|147673584|ref|YP_001218255.1| hypothetical protein VC0395_A2355 [Vibrio cholerae O395]
 gi|262166994|ref|ZP_06034712.1| hypothetical protein VIJ_000156 [Vibrio cholerae RC27]
 gi|146315467|gb|ABQ20006.1| hypothetical protein VC0395_A2355 [Vibrio cholerae O395]
 gi|262024578|gb|EEY43261.1| hypothetical protein VIJ_000156 [Vibrio cholerae RC27]
          Length = 458

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           A AG+GKT+ L + ++  + A         LT+T +A A++   +++
Sbjct: 6  IAGAGAGKTYGLAKTLIEHIEACTSHKKTFALTYTNSATAKIEQEIIK 53


>gi|229097025|ref|ZP_04227993.1| DNA helicase [Bacillus cereus Rock3-29]
 gi|228686421|gb|EEL40331.1| DNA helicase [Bacillus cereus Rock3-29]
          Length = 537

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 7  FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
          + E  + +  IS +  +Q +A+  +    +   AGSGK+  L+ R+++ +         L
Sbjct: 10 YNETEQFLKNISLSDDQQKVATMNSTHLLIKGCAGSGKSITLLTRMMQKMSEEIG-KRFL 68

Query: 67 CLTHTK 72
           ++ +K
Sbjct: 69 FVSFSK 74


>gi|226325204|ref|ZP_03800722.1| hypothetical protein COPCOM_02996 [Coprococcus comes ATCC 27758]
 gi|225206552|gb|EEG88906.1| hypothetical protein COPCOM_02996 [Coprococcus comes ATCC 27758]
          Length = 501

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
          ++ +++ + +  +A    R+ ++S NAG+GK+++L  R +  L A + P T +  T
Sbjct: 8  LEGLTEDQRDAYIALKEGRNVFLSGNAGTGKSYVL-NRFIDDLEARSVPYTAMAPT 62


>gi|242017285|ref|XP_002429122.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212513986|gb|EEB16384.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1462

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           F E  +     + T+ E + A        V    G+GKT + VQ ++  L  N      L
Sbjct: 792 FNELKKNTIPFTPTQIEAIRAGTQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNFPNQRTL 850

Query: 67  CLTHTKAAAAEMSHRVLEI 85
            +TH+  A  ++  +++ +
Sbjct: 851 IVTHSNQALNQLFEKIMSL 869


>gi|168209311|ref|ZP_02634936.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712511|gb|EDT24693.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 763

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 11  SETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTL 65
           ++  D+++  + EQ  ++ +       +  +AGSGKT + + R+  LL           +
Sbjct: 197 TKLKDVVATIQKEQNDIIRAPKNSPLIIQGSAGSGKTTVALHRLAYLLYRYKETITGEDI 256

Query: 66  LCL 68
           L +
Sbjct: 257 LVI 259


>gi|262375118|ref|ZP_06068352.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter lwoffii SH145]
 gi|262310131|gb|EEY91260.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter lwoffii SH145]
          Length = 593

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 11/104 (10%)

Query: 15  DLISQTKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
           D    +  +Q LA +         +S   G+GKT+ L   +   +L  A P+  +     
Sbjct: 121 DRNLLSDPQQKLALEMVARQALNIISGGPGTGKTYTLAHMIA--VLHEALPNIRIAMAAP 178

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
           T  AA  M   + + +      S+ +   E+ +++  +P     
Sbjct: 179 TGKAAQRMKEALQKALH-----SEALQEFELEQLKQLQPVTLHR 217


>gi|198464374|ref|XP_001353198.2| GA21777 [Drosophila pseudoobscura pseudoobscura]
 gi|198149689|gb|EAL30700.3| GA21777 [Drosophila pseudoobscura pseudoobscura]
          Length = 2109

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
           ++  + E + A     S       +    G+GKT+ L Q + +LL   A P   +L  TH
Sbjct: 811 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLL---AQPEAKILICTH 867

Query: 71  TKAAA 75
           + +AA
Sbjct: 868 SNSAA 872


>gi|195327620|ref|XP_002030516.1| GM25483 [Drosophila sechellia]
 gi|194119459|gb|EDW41502.1| GM25483 [Drosophila sechellia]
          Length = 1923

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E + A     S       +    G+GKT+ L Q + +LL        +L  TH+
Sbjct: 809 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLLTQPEA--KILICTHS 866

Query: 72  KAAA 75
            +AA
Sbjct: 867 NSAA 870


>gi|195129647|ref|XP_002009267.1| GI13941 [Drosophila mojavensis]
 gi|193920876|gb|EDW19743.1| GI13941 [Drosophila mojavensis]
          Length = 2009

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
           ++  + E + A     S       +    G+GKT+ L Q + +LL   A P   +L  TH
Sbjct: 810 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLL---AQPEAKILICTH 866

Query: 71  TKAAA 75
           + +AA
Sbjct: 867 SNSAA 871


>gi|163744255|ref|ZP_02151615.1| ATPase [Oceanibulbus indolifex HEL-45]
 gi|161381073|gb|EDQ05482.1| ATPase [Oceanibulbus indolifex HEL-45]
          Length = 512

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 43/130 (33%), Gaps = 24/130 (18%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKA 73
           A  P +   V+  AGSGKT +L +    L  A                  TL  L  T  
Sbjct: 39  AGGPDQVMAVTGKAGSGKTLLLAELYRALEAAGVDIVSGDYESRKKREKRTLAILAPTNK 98

Query: 74  AAAEMSHR------VLEIITAWSHLSDEILSAEITKIQGKKPNKS-----DMSKARHLLI 122
           AA+ +  R      +  I+    +  +    AE     G+KPN        + +A     
Sbjct: 99  AASVLRLRGVPATTIHRILYTPVYHPEYEHIAEWLTGNGEKPNIEGLSDIALDRAAAFFA 158

Query: 123 TILETPGGLK 132
                PG L 
Sbjct: 159 NNKSVPGALA 168


>gi|45553113|ref|NP_996084.1| CG9425, isoform B [Drosophila melanogaster]
 gi|45445895|gb|AAS65008.1| CG9425, isoform B [Drosophila melanogaster]
          Length = 2103

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E + A     S       +    G+GKT+ L Q + +LL        +L  TH+
Sbjct: 806 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLLTQPEA--KILICTHS 863

Query: 72  KAAA 75
            +AA
Sbjct: 864 NSAA 867


>gi|24664327|ref|NP_648725.1| CG9425, isoform A [Drosophila melanogaster]
 gi|7294354|gb|AAF49702.1| CG9425, isoform A [Drosophila melanogaster]
          Length = 2061

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E + A     S       +    G+GKT+ L Q + +LL        +L  TH+
Sbjct: 806 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLLTQPEA--KILICTHS 863

Query: 72  KAAA 75
            +AA
Sbjct: 864 NSAA 867


>gi|332027102|gb|EGI67198.1| Intron-binding protein aquarius [Acromyrmex echinatior]
          Length = 1151

 Score = 39.9 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  
Sbjct: 491 FTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNFPYQRTLIVTHSNQALN 549

Query: 77  EMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++  +++ +     HL      +E L  E    +  + N   ++K   LL+ +      L
Sbjct: 550 QLFEKIMALDIDERHLLRLGHGEEALETEKDFSRYGRVN-YVLAKRLDLLLEVQRLQESL 608

Query: 132 KV 133
            V
Sbjct: 609 NV 610


>gi|195494387|ref|XP_002094818.1| GE22030 [Drosophila yakuba]
 gi|194180919|gb|EDW94530.1| GE22030 [Drosophila yakuba]
          Length = 2080

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E + A     S       +    G+GKT+ L Q + +LL        +L  TH+
Sbjct: 812 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLLTQPEA--KILICTHS 869

Query: 72  KAAA 75
            +AA
Sbjct: 870 NSAA 873


>gi|194870973|ref|XP_001972759.1| GG15699 [Drosophila erecta]
 gi|190654542|gb|EDV51785.1| GG15699 [Drosophila erecta]
          Length = 2072

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E + A     S       +    G+GKT+ L Q + +LL        +L  TH+
Sbjct: 811 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLLTQPEA--KILICTHS 868

Query: 72  KAAA 75
            +AA
Sbjct: 869 NSAA 872


>gi|153829639|ref|ZP_01982306.1| hypothetical protein A59_A0355 [Vibrio cholerae 623-39]
 gi|148874867|gb|EDL73002.1| hypothetical protein A59_A0355 [Vibrio cholerae 623-39]
          Length = 458

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
           A AG+GKT+ L + ++  + A         LT+T +A A++   +++
Sbjct: 6  IAGAGAGKTYGLAKTLIEHIEACTSHKKTFALTYTNSATAKIEQEIIK 53


>gi|47223949|emb|CAG06126.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1674

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 586 LNAKQKEAILAITTPISIFLPPILIIGPYGTGKTFTLAQAVKHILRQ--DHSRVLICTHS 643

Query: 72  KAAA 75
            +AA
Sbjct: 644 NSAA 647


>gi|195590306|ref|XP_002084887.1| GD14504 [Drosophila simulans]
 gi|194196896|gb|EDX10472.1| GD14504 [Drosophila simulans]
          Length = 1577

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E + A     S       +    G+GKT+ L Q + +LL        +L  TH+
Sbjct: 808 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLLTQPEA--KILICTHS 865

Query: 72  KAAA 75
            +AA
Sbjct: 866 NSAA 869


>gi|313902410|ref|ZP_07835813.1| type II secretion system protein E [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467341|gb|EFR62852.1| type II secretion system protein E [Thermaerobacter subterraneus
           DSM 13965]
          Length = 419

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 20/124 (16%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM-----SH 80
           A    R+  ++    SGKT  L    + LL A  HP   ++ L      AAE+      H
Sbjct: 203 AVRSRRNVLIAGATSSGKTTTL----IALLRAATHPLERIIVL----EEAAEIDLGPDRH 254

Query: 81  --RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR----HLLITILETPGGLKVQ 134
             R+              L   +      +P++  + + R      L+  L T     V 
Sbjct: 255 VVRLEARPPGLDGHGAVPLRTLLRNALRMRPDRLVVGEVRGEEAADLMQALNTGHLGSVS 314

Query: 135 TIHA 138
           TIHA
Sbjct: 315 TIHA 318


>gi|169642132|gb|AAI60762.1| LOC100127243 protein [Xenopus laevis]
          Length = 638

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L     P+  L LT T+    E++   ++I    
Sbjct: 260 ERDILASADTGSGKTAAFLLPAIIRCLEKKDSPAA-LILTPTR----ELA---VQIEGQA 311

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L   I       + G  P    + + +  +  I+ TPG L           I+ Q  +
Sbjct: 312 KELMRGIPHMRTALLVGGMPLPPQIHRLKQAVQIIIATPGRL---------LEIINQDCV 362

Query: 150 EANITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKA 191
                    I DE  +   +  ++     L     D+   L  A
Sbjct: 363 NLG-DLKILIVDEADTMLKMGFQQQVLDILEHASHDHQTILVSA 405


>gi|262370058|ref|ZP_06063385.1| exonuclease V alpha subunit [Acinetobacter johnsonii SH046]
 gi|262315097|gb|EEY96137.1| exonuclease V alpha subunit [Acinetobacter johnsonii SH046]
          Length = 581

 Score = 39.9 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           + S    L+     +Q LA    ++   ++   G+GKT+ L  R++ +L  +     +  
Sbjct: 107 DISAYAHLLEDPHQKQALAMVAEQALAIITGGPGTGKTYTLA-RIITVLKQSLPDIRIAM 165

Query: 68  LTHTKAAAAEMSH 80
              T  AA  M  
Sbjct: 166 AAPTGKAAQRMKE 178


>gi|195378460|ref|XP_002048002.1| GJ13732 [Drosophila virilis]
 gi|194155160|gb|EDW70344.1| GJ13732 [Drosophila virilis]
          Length = 2091

 Score = 39.9 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
           ++  + E + A     S       +    G+GKT+ L Q + +LL   A P   +L  TH
Sbjct: 821 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLL---AQPEAKILICTH 877

Query: 71  TKAAA 75
           + +AA
Sbjct: 878 SNSAA 882


>gi|268566961|ref|XP_002639857.1| Hypothetical protein CBG12210 [Caenorhabditis briggsae]
 gi|187029673|emb|CAP31218.1| hypothetical protein CBG_12210 [Caenorhabditis briggsae AF16]
          Length = 615

 Score = 39.9 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLL---ASDPTRSAW-VSANAGSGKTHILVQRVLRLLL 57
           I+        ET++      S+Q     A +P R+   +    G+GKT ++ + V +LL 
Sbjct: 143 IHDRKLNNLPETLN-----PSQQAAVSAALNPQRNLLCIQGPPGTGKTRVIAEIVHQLLK 197

Query: 58  ANAH 61
               
Sbjct: 198 KKKR 201


>gi|326911025|ref|XP_003201863.1| PREDICTED: f-box only protein 18-like [Meleagris gallopavo]
          Length = 933

 Score = 39.9 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 16/78 (20%)

Query: 11  SETIDLISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILV---QRVLRLLLANAHPST 64
           S  +  +  T  +Q + +   +  +   + A AG+GKT  LV   ++   L        +
Sbjct: 418 SSNLSEVKLTHEQQRILNHKIEHGQIVKIMAFAGTGKTSTLVKYAEKFADL--------S 469

Query: 65  LLCLTHTKAAAAEMSHRV 82
            L +T    A AE   R+
Sbjct: 470 FLYVTF-NKAVAE-RGRL 485


>gi|289808517|ref|ZP_06539146.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 56

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAA 74
           + A+AG+GKT  +    LRLLL                LL +T T+AA
Sbjct: 8  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 56


>gi|326490191|dbj|BAJ94169.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 786

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 32  RSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE------ 84
           R   V     G+GKT +L + ++R +        +L    + AA   M  ++        
Sbjct: 516 RPVLVIQGPPGTGKTVLLTELIVRAVRQG---ENVLVTAPSNAAVDNMVEKLSSTGLNIV 572

Query: 85  IITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILET 127
            +   + +S  + S  + +I   + +  + ++ + R  L   L  
Sbjct: 573 RVGNPARISPSVTSKSLAEIVNGRLSQFRKELERKRTDLRKDLRD 617


>gi|325272993|ref|ZP_08139309.1| hypothetical protein G1E_08419 [Pseudomonas sp. TJI-51]
 gi|324101887|gb|EGB99417.1| hypothetical protein G1E_08419 [Pseudomonas sp. TJI-51]
          Length = 636

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 15/132 (11%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT--- 87
             S  V   AG+GKT  L+ +  RLL     P   L L  T+     +  RV +      
Sbjct: 165 DESVAVQGFAGTGKTF-LIHQFARLL----EPQRTLLLALTEGQLRALRARVKDAAAYTA 219

Query: 88  -AWSHLSDEILSAEITKIQGKKPNKSDMSKARH------LLITILETPGGLKVQTIHAFC 140
             +  L+DE+L+ ++T    +  +     ++        +    +   G L  + + A C
Sbjct: 220 LTFGQLADELLNRDLTSNGWRLRDPYRTKRSWRPQEAQVVRWLAIPDIGPLAARDVVALC 279

Query: 141 EAIMQQFPLEAN 152
              ++ F   A+
Sbjct: 280 IRAVRAFCHSAD 291


>gi|156543431|ref|XP_001600886.1| PREDICTED: similar to aquarius [Nasonia vitripennis]
          Length = 1480

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  
Sbjct: 792 FTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNFPNQRTLIVTHSNQALN 850

Query: 77  EMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++  +++ +     HL      +E L  E    +  + N   ++K   LL  +      L
Sbjct: 851 QLFEKIMALDIDERHLLRLGHGEEALETEKDFSRYGRVN-YVLAKRLDLLKEVHRLKESL 909

Query: 132 KVQ 134
            VQ
Sbjct: 910 DVQ 912


>gi|187934950|ref|YP_001886167.1| LexA repressor [Clostridium botulinum B str. Eklund 17B]
 gi|187723103|gb|ACD24324.1| LexA repressor [Clostridium botulinum B str. Eklund 17B]
          Length = 513

 Score = 39.5 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72
          + ++++A+ P   + +   AGSGKT + V ++  LLL +  P     +L +T+ K
Sbjct: 6  EQKRIIANKPNGHSLIKGVAGSGKTTVAVNKI-PLLLRHYCPLKDDKVLMVTYNK 59


>gi|296426050|ref|XP_002842549.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638821|emb|CAZ80284.1| unnamed protein product [Tuber melanosporum]
          Length = 1003

 Score = 39.5 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 24/167 (14%)

Query: 11  SETIDLISQTK--SEQLLASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST 64
           + ++D  SQT    +Q  A +   SA     V    G+GKT  +   +  L+       +
Sbjct: 515 AYSVDSSSQTNLNGDQRKAIEKVMSAQDYALVLGMPGTGKTTTIAHIIRALVGQG---KS 571

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLIT 123
           +L  ++T  A   +      ++   +   D +     TKI  +  + + +++  +     
Sbjct: 572 VLLTSYTHTAVDNI------LLKIKNDNIDTLRLGSGTKIHPEVKSFAQLAEGQKTSFEE 625

Query: 124 ILETPGGLKV--QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
           + ET    K+   T    C  +    P+ +     + I DE     L
Sbjct: 626 LRETFHMPKIVATT----CLGV--NHPIFSERKFDYCIVDEASQITL 666


>gi|259048078|ref|ZP_05738479.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175]
 gi|259035139|gb|EEW36394.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175]
          Length = 714

 Score = 39.5 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           H E I    Q +  +++  +P     V+  AGSGKT IL+QR+  L+
Sbjct: 163 HLEGITATIQKEQNEIIRLNPKDWLIVNGCAGSGKTTILLQRIAYLM 209


>gi|254441341|ref|ZP_05054834.1| hypothetical protein OA307_756 [Octadecabacter antarcticus 307]
 gi|198251419|gb|EDY75734.1| hypothetical protein OA307_756 [Octadecabacter antarcticus 307]
          Length = 484

 Score = 39.5 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMS 79
           + E       T++  V A AG GKT  +V R ++ +  +   S   L LTHT A    + 
Sbjct: 6   QEEVTAIIRATKAGSVIAAAGCGKTEQIV-RTVKAISDDPEVSRRCLILTHTFAGVDVLQ 64

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            R+ ++    S    + +++   +     PN S + K
Sbjct: 65  KRLRKLNVPASSYQLDTIASWCLRFAKSYPNTSGIKK 101


>gi|254491834|ref|ZP_05105013.1| exodeoxyribonuclease V, alpha subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463312|gb|EEF79582.1| exodeoxyribonuclease V, alpha subunit [Methylophaga thiooxydans
           DMS010]
          Length = 578

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           A +S   G+GKT  +V ++L+ L   +    +     T  AAA    R+ + I+      
Sbjct: 164 AVISGGPGTGKT-TIVLKILQCLQNQSDSLRIGLAAPTGKAAA----RLQQSISQQQTAE 218

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            + L   +   +     + +  +   L + I++    + +    +    +M+  P +A +
Sbjct: 219 VKTLHRLLGITEHNDQGRYNAERPLPLDVLIIDEASMIDI----SLMAKLMRAMPAKARL 274


>gi|197121288|ref|YP_002133239.1| superfamily I DNA and RNA helicase-like protein [Anaeromyxobacter
           sp. K]
 gi|196171137|gb|ACG72110.1| superfamily I DNA and RNA helicase-like protein [Anaeromyxobacter
           sp. K]
          Length = 704

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCL 68
           I  +      + +A+   R   V  +AGSGKT + + R+ R+   +     P+ L  +
Sbjct: 233 ITALLDPDQYEAVAAPADRPLLVLGSAGSGKTTVALHRLARIAFEDPRRFPPARLQVV 290


>gi|220915992|ref|YP_002491296.1| superfamily I DNA and RNA helicase-like protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953846|gb|ACL64230.1| superfamily I DNA and RNA helicase-like protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 704

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCL 68
           I  +      + +A+   R   V  +AGSGKT + + R+ R+   +     P+ L  +
Sbjct: 233 ITALLDPDQYEAVAAPADRPLLVLGSAGSGKTTVALHRLARIAFEDPRRFPPARLQVV 290


>gi|303232790|ref|ZP_07319475.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
 gi|302481276|gb|EFL44351.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
          Length = 752

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 9   EHSETIDLISQT-KSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
            HSE +  I+ T + EQ      D   +  +   AGSGKT +L+QR+  LL     
Sbjct: 229 HHSEKLKAITATIQREQNTIIRYDDVDALIIEGIAGSGKTSVLLQRIAYLLYQQKD 284


>gi|301092878|ref|XP_002997290.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262111425|gb|EEY69477.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1454

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLAN 59
           +  S    S  +    +    Q+ A    +      V    G+GKT + VQ VL L    
Sbjct: 835 HKKSLSAASPVVSSPIRYTKTQVAAVRTGQCEGLTLVVGPPGTGKTDVAVQLVLNLYRTT 894

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEI 85
                +L + H+  A  +   R+L +
Sbjct: 895 PAREKILVVAHSNQALNDFFARILAL 920


>gi|297196743|ref|ZP_06914141.1| I DNA and RNA helicase protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720107|gb|EDY64015.1| I DNA and RNA helicase protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 507

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 40/197 (20%)

Query: 17  ISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-TKA 73
           ++ T  +   A          + A AG+GKT  L                       T+A
Sbjct: 1   MNPTDEQTAAADAFHAGHHLALQAGAGTGKTTTLA--------------------FLTRA 40

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
                  R    +     ++ +  +   + +Q K  +    +   H     L  P     
Sbjct: 41  TT-----RRGRYLAYNRAIAQDAAARFPSTVQCKTAHALAYAAVGHRYTRRLNAPRRPAW 95

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           QT                 +T    I D E S++ +  A   T+       +E + +   
Sbjct: 96  QT------------GQALGLTKAVRIGDREISQRALSNAALRTVTRFCHTADEAITRHHV 143

Query: 194 EILEISNDEDIETLISD 210
             L   +D D+   ++ 
Sbjct: 144 PRLRGLDDPDLHAQLAA 160


>gi|16766079|ref|NP_461694.1| DNA/RNA helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|168244554|ref|ZP_02669486.1| hypothetical protein SeHB_A2848 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447385|ref|YP_002046725.1| putative DNA/RNA helicase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197266053|ref|ZP_03166127.1| putative DNA/RNA helicase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|16421315|gb|AAL21653.1| putative superfamily I DNA and RNA helicase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194405689|gb|ACF65908.1| putative DNA/RNA helicase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197244308|gb|EDY26928.1| putative DNA/RNA helicase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205336559|gb|EDZ23323.1| hypothetical protein SeHB_A2848 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261247908|emb|CBG25741.1| putative DNA/RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994869|gb|ACY89754.1| putative DNA/RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159333|emb|CBW18851.1| putative DNA/RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913788|dbj|BAJ37762.1| putative DNA/RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223559|gb|EFX48624.1| hypothetical protein SEE_03495 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131121|gb|ADX18551.1| putative DNA/RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 660

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLT-HTKAAAAEMSHRVLEIITAWSHLSDEILS 98
           AGSGKT +L+ ++  +   N  P + +  T   K  A+ M  R+ E              
Sbjct: 191 AGSGKTELLLHKLKEIYSKN--PDSRIAFTCFNKILASTMRTRIPEFFDFMRVEKQIEWG 248

Query: 99  AEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCEAIMQQFPLEANITSHF 157
            ++         K   S     +    E P GG       A C+                
Sbjct: 249 TKLFCFNSWGLTKEPFSGMYRYICHYYEIPFGGFGNGDFDALCKK--------------- 293

Query: 158 AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           AIAD   S +    A K  L  + +D +++  ++F ++ E+   + +
Sbjct: 294 AIADINNSGR----ADKKALDYVFIDESQDFPQSFIDLCEMVTSKKL 336


>gi|320165935|gb|EFW42834.1| helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1311

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 20  TKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           T  +  + +    P++   + A AG+GKT  L   +   +         L LT   A AA
Sbjct: 636 TSEQHAIVACNLAPSQVMKIVAFAGTGKTSTL---IAYTMARRH--QRFLYLTFNNAMAA 690

Query: 77  E 77
           E
Sbjct: 691 E 691


>gi|153811194|ref|ZP_01963862.1| hypothetical protein RUMOBE_01586 [Ruminococcus obeum ATCC 29174]
 gi|149832692|gb|EDM87776.1| hypothetical protein RUMOBE_01586 [Ruminococcus obeum ATCC 29174]
          Length = 841

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           Y +     +E ++ I   + +++L      +R   V   AG+GKT +  + + +L     
Sbjct: 414 YSDMLANKAEFMNEIDDVEKQKILENIFINSRLGMVYGAAGTGKTRV-AEYIAKLF---- 468

Query: 61  HPSTLLCLTHTKAAAAEMSHRV 82
               +L L +T AA   +  R+
Sbjct: 469 DDKNILLLANTNAAKNNLERRI 490


>gi|71019345|ref|XP_759903.1| hypothetical protein UM03756.1 [Ustilago maydis 521]
 gi|46099558|gb|EAK84791.1| hypothetical protein UM03756.1 [Ustilago maydis 521]
          Length = 1166

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 21/106 (19%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR------- 81
           P     V A AG+GKT  L      L  +   P    L +   KAAA E   R       
Sbjct: 390 PGELVKVQAFAGTGKTRSL------LAYSQRRPHKRFLYIAFNKAAAEEARRRFPSNVQC 443

Query: 82  -------VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
                  + +++        ++ + ++ ++ G+   +  + +A+ +
Sbjct: 444 RTMHSVALCQVVRTAGQEIGDLRARDVVRLLGESLPEGQLVRAQAM 489


>gi|307149656|ref|YP_003891026.1| superfamily I DNA/RNA helicase [Cyanothece sp. PCC 7822]
 gi|306986785|gb|ADN18661.1| superfamily I DNA/RNA helicase [Cyanothece sp. PCC 7822]
          Length = 958

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 77/228 (33%), Gaps = 45/228 (19%)

Query: 36  VSANAGSGKTHILVQRVL--------RLLLANAHPSTLLCLTHTK---------AAAAEM 78
           V    G+GKT +LV  +         +L+      S L  +T T            A E+
Sbjct: 267 VIGPPGNGKTSLLVHIIAISLVKRAHQLITTGIDESNLTLVTSTNNRAVTNVIEKLATEL 326

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT--- 135
                 +        D+ +  ++ + +     ++        +   +E     K+ T   
Sbjct: 327 GDNFFYLEGGRKDFIDKQVIPKLLRAKNWLETETFNETLWQQISREIE-----KISTSLQ 381

Query: 136 ----IHAFCEAIMQQFPLEANITS----HFAIADEEQSKKLIEE----AKKSTLASIMLD 183
               I      I +    E ++      +  I   ++   ++E+    + +S      + 
Sbjct: 382 SQPQID-----IERAHQREKDLQQKEQLNREIESLQERLSILEQQPITSPESNYQQYPIL 436

Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231
             E++K A    ++     D+E L+    ++R+  + +++    LW  
Sbjct: 437 AYEQIKAALERAVKSFPPVDLEPLLQ---NSRSWWERLWYSLKKLWLD 481


>gi|153828434|ref|ZP_01981101.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876143|gb|EDL74278.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 633

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 13/103 (12%)

Query: 36  VSANAGSGKTHILVQR--VLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW---- 89
           + A  G+GKT  LV +  ++   +     S +L LTHT  A  E+  ++    +      
Sbjct: 36  IQACPGAGKTTSLVAKLDIISRQMPFPDKSGILVLTHTNVAVDEVKSKLGNNASKLLGYP 95

Query: 90  -------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
                  S ++  + +    K+  KKP K D       L +IL
Sbjct: 96  NHIGTFQSFVNKYLATPMYIKLYKKKPEKIDSDLFEEKLKSIL 138


>gi|260493926|ref|ZP_05814057.1| helicase [Fusobacterium sp. 3_1_33]
 gi|260198072|gb|EEW95588.1| helicase [Fusobacterium sp. 3_1_33]
          Length = 1475

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAH 61
           N  ++ S+ +    +T +EQ+       S     V    G+GKTH +   +   L     
Sbjct: 331 NENEKCSDIL-FTKETNNEQIEIVKNIYSHKAVVVQGPPGTGKTHTIANLLGHFLAEG-- 387

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAW 89
              +L  + T+ A   +  ++   I   
Sbjct: 388 -KNVLITSQTRKALEVLKEKIPSEIQDL 414


>gi|297571239|ref|YP_003697013.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931586|gb|ADH92394.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 751

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           QT+ +Q++ SD      V    G+GKT + + R   LL
Sbjct: 188 QTEQDQIIRSDVNGILVVQGGPGTGKTAVALHRAAYLL 225


>gi|281202655|gb|EFA76857.1| putative splicing endonuclease [Polysphondylium pallidum PN500]
          Length = 1423

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 16  LISQTKSEQLLAS----DPTRSAWVSANAGSGKTHILVQRVLRLL-------LANAHPST 64
           L+S+  S Q+ A      P     +    G+GKT  ++  +  LL       + +  P  
Sbjct: 807 LLSELNSSQMEAIYHSLIPHGFTLLQGPPGTGKTKTIMALLSVLLSTPLDSKINSTAPPK 866

Query: 65  LLCLTHTKAAAAEMSHRVLE 84
           +L    + AA  E++ R+++
Sbjct: 867 ILVCAPSNAAVDEIASRIID 886


>gi|302876073|ref|YP_003844706.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307686794|ref|ZP_07629240.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302578930|gb|ADL52942.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 754

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 10  HSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
            S+   +++  + EQ  ++ ++  ++  V   AGSGKT + + R+  LL  +  
Sbjct: 199 DSKMKAIVTTIQREQNKVIRNEEYKNLIVQGPAGSGKTSVALHRIAYLLYKHRD 252


>gi|261204485|ref|XP_002629456.1| DNA helicase [Ajellomyces dermatitidis SLH14081]
 gi|239587241|gb|EEQ69884.1| DNA helicase [Ajellomyces dermatitidis SLH14081]
 gi|239614217|gb|EEQ91204.1| DNA helicase [Ajellomyces dermatitidis ER-3]
 gi|327353693|gb|EGE82550.1| hypothetical protein BDDG_05494 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 755

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 12  ETIDL-ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           E ID  ++ ++ E +  A      A +    G+GKT+ L++ +L+LL  N     +L 
Sbjct: 251 EFIDSTLNDSQREAVRFALASREIALIHGPPGTGKTYTLIELILQLLRQNL---RILV 305


>gi|229136489|ref|ZP_04265203.1| Superfamily I DNA and RNA helicase [Bacillus cereus BDRD-ST196]
 gi|228646972|gb|EEL03093.1| Superfamily I DNA and RNA helicase [Bacillus cereus BDRD-ST196]
          Length = 478

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          + +++L         V   AGSGKT + + R   L   +     +L +T  K
Sbjct: 9  RQKEVLCLPEIGHYVVLGTAGSGKTTLAIHRAAYLAKRSKSKEKVLLVTFNK 60


>gi|195020517|ref|XP_001985211.1| GH16935 [Drosophila grimshawi]
 gi|193898693|gb|EDV97559.1| GH16935 [Drosophila grimshawi]
          Length = 2141

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
           ++  + E + A     S       +    G+GKT+ L Q + +LL   A P   +L  TH
Sbjct: 847 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLL---AQPEAKILICTH 903

Query: 71  TKAAA 75
           + +AA
Sbjct: 904 SNSAA 908


>gi|313105903|ref|ZP_07792166.1| putative helicase [Pseudomonas aeruginosa 39016]
 gi|90569583|gb|ABD94654.1| conserved hypothetical protein [Pseudomonas aeruginosa]
 gi|310878668|gb|EFQ37262.1| putative helicase [Pseudomonas aeruginosa 39016]
          Length = 493

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRLL--------LANA 60
          +  T  +  +         V A AG+GKT  LV         R+L L             
Sbjct: 1  MQWTHEQSPIIQSKASKILVRAFAGTGKTTTLVGFAKANPTLRILYLCYNSSVEKAAKGK 60

Query: 61 HPSTLLCLT 69
           P  ++C T
Sbjct: 61 FPRNVVCKT 69


>gi|254244584|ref|ZP_04937906.1| hypothetical protein PA2G_05450 [Pseudomonas aeruginosa 2192]
 gi|126197962|gb|EAZ62025.1| hypothetical protein PA2G_05450 [Pseudomonas aeruginosa 2192]
          Length = 493

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRLL--------LANA 60
          +  T  +  +         V A AG+GKT  LV         R+L L             
Sbjct: 1  MQWTHEQSPIIQSKASKILVRAFAGTGKTTTLVGFAKANPTLRILYLCYNSSVEKAAKGK 60

Query: 61 HPSTLLCLT 69
           P  ++C T
Sbjct: 61 FPRNVVCKT 69


>gi|237744517|ref|ZP_04574998.1| DNA helicase [Fusobacterium sp. 7_1]
 gi|229431746|gb|EEO41958.1| DNA helicase [Fusobacterium sp. 7_1]
          Length = 1425

 Score = 39.5 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAH 61
           N  ++ S+ +    +T +EQ+       S     V    G+GKTH +   +   L     
Sbjct: 281 NENEKCSDIL-FTKETNNEQIEIVKNIYSHKAVVVQGPPGTGKTHTIANLLGHFLAEG-- 337

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAW 89
              +L  + T+ A   +  ++   I   
Sbjct: 338 -KNVLITSQTRKALEVLKEKIPSEIQDL 364


>gi|296118827|ref|ZP_06837403.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
          DSM 20306]
 gi|295968316|gb|EFG81565.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
          DSM 20306]
          Length = 1057

 Score = 39.5 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
            S  V+  AGSG T  L   VL  +     P ++L ++ +K + A +   +   + 
Sbjct: 32 AGSYVVTGPAGSGLTSFLADTVLHHIEQGQDPDSILVVSSSKESGARLREDITTRLA 88


>gi|326201376|ref|ZP_08191248.1| protein of unknown function DUF450 [Clostridium papyrosolvens DSM
           2782]
 gi|325988944|gb|EGD49768.1| protein of unknown function DUF450 [Clostridium papyrosolvens DSM
           2782]
          Length = 1005

 Score = 39.5 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 41/224 (18%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-----LLCLTHTKAAAAEMSHRVLEI 85
             +  +  +AGSGK++ +      L   +   S      ++ +T           RVL+ 
Sbjct: 296 GHNYLIQHSAGSGKSNSIAWLAHHLSTLHDSESQVVFNSIVVIT---------DRRVLDR 346

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
               +    E +   + +I      KS +SK++ L    L     + + T        +Q
Sbjct: 347 QLQDTIYQFEHVDGVVARID----EKSSISKSKQL-TDALNNNAKIIITT--------LQ 393

Query: 146 QFPLEANITSHFA------IADEEQSKKLIE--EAKKSTLASIMLDNNEELKKAFYEI-- 195
            FP   +   H +      I DE  S +  +  E  K  LA I    ++E+++  ++   
Sbjct: 394 TFPFILDKVEHSSEKKFAVIVDEAHSSQTGKASEKLKEALAEIETKGDDEIEEKLHQFAE 453

Query: 196 ----LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235
               +E   D+  + +  ++ S+     L FF F+   ++K +E
Sbjct: 454 TEARIESQTDDSEDEVAREMASHGIQQNLSFFAFTATPKQKTLE 497


>gi|152985026|ref|YP_001349853.1| DNA helicase [Pseudomonas aeruginosa PA7]
 gi|150960184|gb|ABR82209.1| DNA helicase [Pseudomonas aeruginosa PA7]
          Length = 493

 Score = 39.5 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRLL--------LANA 60
          +  T  +  +         V A AG+GKT  LV         R+L L             
Sbjct: 1  MQWTHEQSPIIQSKASKILVRAFAGTGKTTTLVGFAKANPTLRILYLCYNSSVEKAAKGK 60

Query: 61 HPSTLLCLT 69
           P  ++C T
Sbjct: 61 FPRNVVCKT 69


>gi|294502450|ref|YP_003566512.1| helicase IV [Yersinia pestis Z176003]
 gi|294352909|gb|ADE63250.1| helicase IV [Yersinia pestis Z176003]
          Length = 481

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 8/123 (6%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAA 76
           S T  +  +         V A AG+GKT  LV R  +     A+P   +L L + +A   
Sbjct: 4   SDTPEQAAIIGWSGHRLVVRAFAGTGKTSTLV-RFAQ-----ANPDCRMLYLAYNRAVRD 57

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E   +    +   +       +      +    N      AR L          + + T 
Sbjct: 58  EAEQKFPFNVECKTSHQLAWPNFGRHYQRRLTANLRITDVARQLNTRHWP-LARVAITTF 116

Query: 137 HAF 139
           +AF
Sbjct: 117 NAF 119


>gi|166153993|ref|YP_001654111.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 434/Bu]
 gi|166154868|ref|YP_001653123.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335192|ref|ZP_07223436.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis L2tet1]
 gi|165929981|emb|CAP03464.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 434/Bu]
 gi|165930856|emb|CAP06418.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 496

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E I L+S+ +++ L     +  + V    G+GKT  L  +++RL+LA    + ++  + T
Sbjct: 132 EEIALLSEEQNQVLKTVLNSCFSLVCGGPGTGKTF-LAVQMIRLILAQIPSAQIMVASPT 190

Query: 72  KAAAA 76
             A+A
Sbjct: 191 GKASA 195


>gi|116179364|ref|XP_001219531.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88184607|gb|EAQ92075.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 742

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           HN      ++       + +++     T++  VSA  GSGKT          ++A     
Sbjct: 40  HNLLTRQKKSCSFTPSKEQQEIAELCGTKNVIVSARPGSGKTAT-----AEAIVAAHPDK 94

Query: 64  TLLCLTHTKA 73
            ++ LT++K 
Sbjct: 95  RVVVLTYSKR 104


>gi|322433747|ref|YP_004215959.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
 gi|321161474|gb|ADW67179.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 730

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 24  QLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
           Q    +      A V+ +AG+GKT + + R + L   N   S +L  T ++  A  + +R
Sbjct: 248 QRAIVERNFNGPARVTGSAGTGKTIVALHRAVYL-AQNNPSSRVLLTTFSEVLANALDNR 306

Query: 82  VLEIITAWSHLSDEI 96
           +  +I+  S L ++I
Sbjct: 307 LRVLISNRSWLGEQI 321


>gi|256027296|ref|ZP_05441130.1| DNA helicase [Fusobacterium sp. D11]
 gi|289765271|ref|ZP_06524649.1| DNA helicase [Fusobacterium sp. D11]
 gi|289716826|gb|EFD80838.1| DNA helicase [Fusobacterium sp. D11]
          Length = 1475

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAH 61
           N  ++ S+ +    +T +EQ+       S     V    G+GKTH +   +   L     
Sbjct: 331 NENEKCSDIL-FTKETNNEQIEIVKNIYSHKAVVVQGPPGTGKTHTIANLLGHFLAEG-- 387

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIITAW 89
              +L  + T+ A   +  ++   I   
Sbjct: 388 -KNVLITSQTRKALEVLKEKIPSEIQDL 414


>gi|254822851|ref|ZP_05227852.1| ATP-dependent helicase HrpA [Mycobacterium intracellulare ATCC
           13950]
          Length = 1305

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL    + +++  +       V A   GSGKT  L        R +R  + +  P  L  
Sbjct: 67  DLPVSARRQEIADAIRGNQVVVIAGETGSGKTTQLPKICLEAGRGIRGTIGHTQPRRLAA 126

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E++  + E +      +D +    + K+       +++ + R LL 
Sbjct: 127 RTVAQRIADELASPLGEAVGYSVRFTDRVGDRTLIKLMTDGILLAEIQRDRRLLR 181


>gi|225572362|ref|ZP_03781226.1| hypothetical protein RUMHYD_00656 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040244|gb|EEG50490.1| hypothetical protein RUMHYD_00656 [Blautia hydrogenotrophica DSM
           10507]
          Length = 680

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           + +  +  +      V    AGSGKT + + R+  LL     +   S +L L
Sbjct: 201 REQNAIIRNTQDRILVIQGVAGSGKTSVALHRIAYLLYHDREHLKSSNILVL 252


>gi|84616903|emb|CAJ13797.1| predicted ATPase [Desulfococcus multivorans]
          Length = 457

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
                + S P +   V+   GSGKT +L QR+L+L+ +      +L L
Sbjct: 38 LPRRVAIGSLPGKVTVVTGVRGSGKTTLLHQRILQLIESGVTRENILSL 86


>gi|307176772|gb|EFN66172.1| Intron-binding protein aquarius [Camponotus floridanus]
          Length = 1145

 Score = 39.5 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  
Sbjct: 491 FTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNFPNQRTLIVTHSNQALN 549

Query: 77  EMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++  +++ +     HL      +E L  E    +  + N   ++K   LL+ +      L
Sbjct: 550 QLFEKIMALDIDERHLLRLGHGEEALETEKDFSRYGRVN-YVLAKRLDLLLEVQRLQESL 608

Query: 132 KV 133
            V
Sbjct: 609 NV 610


>gi|145505511|ref|XP_001438722.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405894|emb|CAK71325.1| unnamed protein product [Paramecium tetraurelia]
          Length = 743

 Score = 39.5 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 15  DLISQTKSEQLLASDPTRS----AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           D I Q   +Q +A     +    + +    G+GKT  + + + + +L   H   +L   +
Sbjct: 211 DTIKQLNDQQKIAVQKAMNQPHISLIHGPPGTGKTRTVCEYIKQAVLVQRH--KILACAN 268

Query: 71  TKAAAAEMSHRVLE-------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           +  A   M  R+          I   + ++D++    I ++  K  + + M   +  +  
Sbjct: 269 SNIAVDNMIERIQNISQLKVCRIGNPARMTDQVRYVCIDQLVKKTTSYAIMKTIKTEIQQ 328

Query: 124 ILETPGGL 131
           I +     
Sbjct: 329 IEKKLNRA 336


>gi|134114680|ref|XP_774048.1| hypothetical protein CNBH0940 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256678|gb|EAL19401.1| hypothetical protein CNBH0940 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 748

 Score = 39.5 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAA 74
             G+GKTH LV+ + +LL   A P+      +L  T +  A
Sbjct: 259 PPGTGKTHTLVELIFQLLSRPASPNTTLPPRILITTPSNLA 299


>gi|331084048|ref|ZP_08333155.1| hypothetical protein HMPREF0992_02079 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402410|gb|EGG81980.1| hypothetical protein HMPREF0992_02079 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 682

 Score = 39.5 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           K +  +  +      V   A GSGKT + + R+  LL     +   S +L L
Sbjct: 201 KEQNAIIRNTKDKIMVIQGAAGSGKTSVALHRIAYLLYHDREHLKSSNILVL 252


>gi|310815049|ref|YP_003963013.1| ATPase [Ketogulonicigenium vulgare Y25]
 gi|308753784|gb|ADO41713.1| ATPase [Ketogulonicigenium vulgare Y25]
          Length = 507

 Score = 39.5 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAA 74
           S+  R+  V   AGSGKT +L Q    L  +                  TL  L+ T  A
Sbjct: 38  SETQRTLAVIGKAGSGKTLLLAQMTRALKESGVEIISADWEGKARKDRRTLAVLSPTNKA 97

Query: 75  AAEMSHR------VLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
           A+ + +R      +  I+ +  +  D    AE    QG +P  +D
Sbjct: 98  ASVLRNRGVPATTIHRILYSPVYDPDYEKLAEWLTGQGDRPEATD 142


>gi|226237522|dbj|BAH47270.1| ATP-dependent exonuclease/helicase subunit A [Streptococcus suis]
          Length = 1100

 Score = 39.5 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 141 EAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-I 198
             ++  +     I+  F I  DE +   L +E      A  + ++      AF +++   
Sbjct: 15  AEMVTTYGYSLGISPQFRILQDETEKASLKKEVFDQLFADYLEEDE---NGAFRKLVRNF 71

Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           S +    +    ++      ++  F  S     K +++ 
Sbjct: 72  SGNRKDNSGFRQVV-----YQVHDFSQSTSSPTKWLKEQ 105


>gi|107099820|ref|ZP_01363738.1| hypothetical protein PaerPA_01000840 [Pseudomonas aeruginosa
          PACS2]
 gi|37955723|gb|AAP22562.1| putative helicase [Pseudomonas aeruginosa]
          Length = 493

 Score = 39.5 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRLL--------LANA 60
          +  T  +  +         V A AG+GKT  LV         R+L L             
Sbjct: 1  MQWTHEQSPIIQSKASKILVRAFAGTGKTTTLVGFAKANPTLRILYLCYNSSVEKAAKGK 60

Query: 61 HPSTLLCLT 69
           P  ++C T
Sbjct: 61 FPRNVVCKT 69


>gi|330917057|ref|XP_003297659.1| hypothetical protein PTT_08146 [Pyrenophora teres f. teres 0-1]
 gi|330935060|ref|XP_003304815.1| hypothetical protein PTT_17500 [Pyrenophora teres f. teres 0-1]
 gi|311318413|gb|EFQ87087.1| hypothetical protein PTT_17500 [Pyrenophora teres f. teres 0-1]
 gi|311329531|gb|EFQ94249.1| hypothetical protein PTT_08146 [Pyrenophora teres f. teres 0-1]
          Length = 1967

 Score = 39.5 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 27   ASDPTRSAWVSANAGSGKTHILVQRVLRLL-----------------LANAHPSTLLCLT 69
            A D      +    GSGKT  +   V  +L                  ++A P  +L   
Sbjct: 1284 AIDNDGFTLIQGPPGSGKTKTITAIVGAILSGSFRNRGTNIAVPGQPQSDAAPKKILVCA 1343

Query: 70   HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
             + AA  E+  R  + I   +    +I    + + +  K +  D++
Sbjct: 1344 PSNAAVDELCMRFRQGIKTLNGEERQISIVRLGRSEAVKASIQDLT 1389


>gi|296391325|ref|ZP_06880800.1| DNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 315

 Score = 39.5 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 16/67 (23%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRLL--------LANAHP 62
           T  +  +         V A AG+GKT  LV         R+L L              P
Sbjct: 2  WTHEQSPIIQSKASKILVRAFAGTGKTTTLVGFAKANPTLRILYLCYNSSVEKAAKGKFP 61

Query: 63 STLLCLT 69
            ++C T
Sbjct: 62 RNVVCKT 68


>gi|282860378|ref|ZP_06269446.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
 gi|282586876|gb|EFB92113.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
          Length = 1131

 Score = 39.5 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE---MSH-------RVL 83
             +    G+GKT + +Q ++R  LA    S +L L++T  A  E   M         R+ 
Sbjct: 690 FLLIGPPGTGKTSMALQFLVRETLAEKEDSNILLLSYTNRAVDEICGMLSENDIDYIRIG 749

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
              +      + +L+A+I +    +  K+ +  +R ++ T         +  + +F  AI
Sbjct: 750 NEFSCNPQFKNHLLAAKIAQNPQLETIKNTIINSRIMVCTTSTLASHTNIFNLKSFDLAI 809

Query: 144 M 144
           +
Sbjct: 810 V 810


>gi|160887426|ref|ZP_02068429.1| hypothetical protein BACOVA_05445 [Bacteroides ovatus ATCC 8483]
 gi|156107837|gb|EDO09582.1| hypothetical protein BACOVA_05445 [Bacteroides ovatus ATCC 8483]
          Length = 763

 Score = 39.5 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 17  ISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I+  K +         S          G+GKT+++ + V  LL  N   S++L    T  
Sbjct: 201 INSNKEQVEEIVKTLESTSQLIFQGPPGTGKTYLMAELVAHLLSQN---SSVLVTAMTNR 257

Query: 74  AAAEMSHR--VLEIITAWSHLSDEILSAEITKIQGKKP 109
           A  E++ +  + + ++    +   + S E+   +   P
Sbjct: 258 ALIELAEKDSLKKYLSDKRVMKTNVSSDELITCKNLCP 295


>gi|322795860|gb|EFZ18539.1| hypothetical protein SINV_80060 [Solenopsis invicta]
          Length = 1110

 Score = 39.5 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  
Sbjct: 495 FTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNFPNQRTLIVTHSNQALN 553

Query: 77  EMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++  +++ +     HL      +E L  E    +  + N   ++K   LL+ +      L
Sbjct: 554 QLFEKIMALDIDERHLLRLGHGEEALETEKDFSRYGRVN-YVLAKRLDLLLEVQRLQESL 612

Query: 132 KV 133
            V
Sbjct: 613 NV 614


>gi|260587662|ref|ZP_05853575.1| putative DNA helicase [Blautia hansenii DSM 20583]
 gi|260541927|gb|EEX22496.1| putative DNA helicase [Blautia hansenii DSM 20583]
          Length = 695

 Score = 39.5 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           K +  +  +      V   A GSGKT + + R+  LL     +   S +L L
Sbjct: 214 KEQNAIIRNTKDKIMVIQGAAGSGKTSVALHRIAYLLYHDREHLKSSNILVL 265


>gi|311033031|ref|ZP_07711121.1| ATP-dependent DNA helicase replicase [Bacillus sp. m3-13]
          Length = 776

 Score = 39.5 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLC 67
           Q +  +++  D  R   V   AGSGKT   +QR+  LL     N     +L 
Sbjct: 212 QQEQNRIIRHDRGRLLIVHGAAGSGKTSAALQRIAYLLYKYRDNLDADQILL 263


>gi|148807299|gb|ABR13373.1| hypothetical protein [Pseudomonas aeruginosa]
          Length = 493

 Score = 39.5 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRLL--------LANA 60
          +  T  +  +         V A AG+GKT  LV         R+L L             
Sbjct: 1  MQWTHEQSPIIQSKASKILVRAFAGTGKTTTLVGFAKANATLRILYLCYNSSVEKAAKGK 60

Query: 61 HPSTLLCLT 69
           P  ++C T
Sbjct: 61 FPRNVVCKT 69


>gi|226304348|ref|YP_002764306.1| exodeoxyribonuclease V alpha chain [Rhodococcus erythropolis PR4]
 gi|226183463|dbj|BAH31567.1| exodeoxyribonuclease V alpha chain [Rhodococcus erythropolis PR4]
          Length = 622

 Score = 39.5 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 20  TKSEQLLASDPTRSAW--VSAN-AGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
               Q +A+    + W  V A   G+GKTH  V R+L LL       + +     T  AA
Sbjct: 172 APDRQRIAAALAATQWTTVIAGGPGTGKTHT-VARILALLSEELGSKARIGLAAPTGKAA 230

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
           A +   V E   +   L +E+ +  + ++ G +   S  
Sbjct: 231 ARLQESVREQTASLG-LPEELAAMTLHRLLGWQRGSSSR 268


>gi|296481517|gb|DAA23632.1| F-box only protein, helicase, 18 [Bos taurus]
          Length = 1045

 Score = 39.5 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ S       V    A AG+GKT  LV+            S  L +T    
Sbjct: 441 IQLTHEQQLILSHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 494

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 495 SIAKQAERVF 504


>gi|238060936|ref|ZP_04605645.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
 gi|237882747|gb|EEP71575.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
          Length = 1095

 Score = 39.5 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 44/157 (28%), Gaps = 39/157 (24%)

Query: 56  LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
           +     P  +L LT  +  A ++  R+   +    H                        
Sbjct: 1   MAEGVDPERVLVLTFGRRQATDLRRRIEARVAGDGH------------------------ 36

Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175
               +L   L       V+T  A+   ++++   E        +    +   +I E    
Sbjct: 37  ---RVLREPL-------VRTFPAYAYGLLRRAAAERG-EPSPRLLTGPEQDLIIRE---- 81

Query: 176 TLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212
            L  +  + +++      E+            + D++
Sbjct: 82  LLDVVGEEPDDDPVGWPEELRPALRTRAFAAQLRDLL 118


>gi|149642687|ref|NP_001092533.1| F-box only protein 18 [Bos taurus]
 gi|148744046|gb|AAI42301.1| FBXO18 protein [Bos taurus]
          Length = 1045

 Score = 39.5 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ S       V    A AG+GKT  LV+            S  L +T    
Sbjct: 441 IQLTHEQQLILSHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 494

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 495 SIAKQAERVF 504


>gi|320328424|gb|EFW84426.1| UvrD/REP helicase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330885722|gb|EGH19871.1| UvrD/REP helicase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 662

 Score = 39.5 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 25/118 (21%)

Query: 28  SDPTRSAW-------VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79
            +P R          V+A  GSGKT ++V ++  L     +    +  L+HT AA  E+ 
Sbjct: 28  DEPRRDFLKSMDTVDVAACPGSGKTTLVVAKLAILARHWKSRMQGICVLSHTNAAREEIE 87

Query: 80  HR-----VLEIITAWSHLSDEI------------LSAEITKIQGKKPNKSDMSKARHL 120
            R     V + +  + H  D I            L ++   +Q      +  ++ R L
Sbjct: 88  KRLGGTEVGQRLLRFPHYIDTIHGFTGRFLASPWLRSKDIALQAIDDEATHKARRREL 145


>gi|283798545|ref|ZP_06347698.1| UvrD/Rep helicase family protein [Clostridium sp. M62/1]
 gi|291073812|gb|EFE11176.1| UvrD/Rep helicase family protein [Clostridium sp. M62/1]
          Length = 697

 Score = 39.5 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+I+  + EQ       P ++  V   AGSGKT + + R+  LL
Sbjct: 203 DIIATIQREQNEIIRDIPYKNIIVQGVAGSGKTTVALHRISYLL 246


>gi|302876851|ref|YP_003845484.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307687536|ref|ZP_07629982.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302579708|gb|ADL53720.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 758

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---P 62
            + +   D++S  ++EQ  ++ +D  +   V   AG GKT I + R+  LL  +     P
Sbjct: 185 SKDNRLKDIVSTIQAEQNKVIRADMWKPLVVQGAAGGGKTTIALHRIAYLLYNHEDLLSP 244

Query: 63  STLLCL 68
              + +
Sbjct: 245 KNFMII 250


>gi|229494323|ref|ZP_04388086.1| exodeoxyribonuclease V, alpha subunit [Rhodococcus erythropolis
           SK121]
 gi|229318685|gb|EEN84543.1| exodeoxyribonuclease V, alpha subunit [Rhodococcus erythropolis
           SK121]
          Length = 622

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 20  TKSEQLLASDPTRSAW--VSAN-AGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
               Q +A+    + W  V A   G+GKTH  V R+L LL       + +     T  AA
Sbjct: 172 APDRQRIAAALAATQWTTVIAGGPGTGKTHT-VARILALLSEELGSNARIGLAAPTGKAA 230

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           A +   V E   +   L +E+ +  + ++ G +   S   K
Sbjct: 231 ARLQESVREQTASLG-LPEELAAMTLHRLLGWQRGSSSRFK 270


>gi|74318703|ref|YP_316443.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74058198|gb|AAZ98638.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 1009

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 31/214 (14%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAA 76
            +      P  +  V  +AGSGK++    L  R+  L   + H    +++ +T       
Sbjct: 290 EDAARTEGPGHNYLVEHSAGSGKSNTIGWLAHRLASLHNESDHKVFDSVIVIT------- 342

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
               R          + D  L   I + + ++     + +    L   L     + + T+
Sbjct: 343 ---DR---------RVLDRQLQDTIYQFEHRQGVVQKIDEDSRQLAEALTNSVPIIISTL 390

Query: 137 HA--FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF-- 192
               F    + +   E    +   I    +   +I+EA  S       D  E L      
Sbjct: 391 QKFPFVARQLARMAEERREGAD-GILPTRRCAVIIDEAHSSQSGETATDLKEVLGGHVLR 449

Query: 193 YEILEISNDEDIETL--ISDIISNRTALKLIFFF 224
            E    + DE ++ L  +   ++ R     + FF
Sbjct: 450 EEAARYAVDEGVDNLDELYRSMAKRGRQTNLSFF 483


>gi|159038636|ref|YP_001537889.1| UvrD/Rep helicase [Salinispora arenicola CNS-205]
 gi|157917471|gb|ABV98898.1| UvrD/Rep helicase [Salinispora arenicola CNS-205]
          Length = 717

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 21  KSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
             ++  A    R    +S  AG+GKT +L+ R  R +      + ++  T T   A  + 
Sbjct: 255 PEQRHYAVRRYRGPFRLSGGAGTGKTVVLLHR-ARAMARERPDARIVLTTFTTNLADALR 313

Query: 80  H 80
            
Sbjct: 314 D 314


>gi|325831111|ref|ZP_08164435.1| hypothetical protein HMPREF9404_4725 [Eggerthella sp. HGA1]
 gi|325487032|gb|EGC89478.1| hypothetical protein HMPREF9404_4725 [Eggerthella sp. HGA1]
          Length = 644

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 24/46 (52%)

Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
          + +AS   R A V   A SGKT  LV+R   L+   A P T+L  T
Sbjct: 3  EAIASFDGRIAKVQGPARSGKTEALVRRCACLVRGGAAPETILVET 48


>gi|73960318|ref|XP_537128.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           isoform 2 isoform 1 [Canis familiaris]
          Length = 620

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 32/185 (17%)

Query: 36  VSANA--GSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V A+A  GSGKT   L+  + R L  +  PS  L LT T+    E++ ++          
Sbjct: 244 VLASADTGSGKTAAFLLPVITRALCESKTPSA-LILTPTR----ELAIQIENQAKELMS- 297

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA- 151
              +   +   + G  P    + + R  +  I+ TPG L           I++Q  +E  
Sbjct: 298 --GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRL---------LDIIKQSSVELC 346

Query: 152 NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
            I     + DE  +   +  ++     L  +  D+   L  A            IE L S
Sbjct: 347 GI--KIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIP-------TSIEQLAS 397

Query: 210 DIISN 214
            ++ N
Sbjct: 398 QLLHN 402


>gi|330830109|ref|YP_004393061.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328805245|gb|AEB50444.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 431

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHT 71
           ++  + + + A    R    SA  G+GKT      +L+ L+ N  P     + +L LT T
Sbjct: 24  MTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLVDNPAPVQPSNARVLILTPT 83

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +    E++ +V   I  ++    + L      I G         K +     I+ TPG L
Sbjct: 84  R----ELAAQVASNINDFA----KYLDITTITIVGGGKQDVQAKKLKAGAHIIVATPGRL 135


>gi|293409527|ref|ZP_06653103.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469995|gb|EFF12479.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 651

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           Q L     ++  +    G+GKT  L +R+   L+    P  +  +  
Sbjct: 382 QRLID--KKNLILQGPPGTGKTW-LARRLAYCLMGEKAPERISAVQF 425


>gi|195454153|ref|XP_002074111.1| GK12792 [Drosophila willistoni]
 gi|194170196|gb|EDW85097.1| GK12792 [Drosophila willistoni]
          Length = 1495

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 819 TPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNQPQQRTLIVTHSNQALNQ 877

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +++ +     HL      +E L  E    +  + N   ++K   LL  + +    L 
Sbjct: 878 LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLNQVQQLQEALG 936

Query: 133 VQ 134
           V 
Sbjct: 937 VS 938


>gi|15604751|ref|NP_219535.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3328424|gb|AAC67623.1| Exodeoxyribonuclease V, Alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|296436473|gb|ADH18643.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis G/11222]
 gi|297748164|gb|ADI50710.1| Exodeoxyribonuclease V alpha chain [Chlamydia trachomatis D-EC]
 gi|297749044|gb|ADI51722.1| Exodeoxyribonuclease V alpha chain [Chlamydia trachomatis D-LC]
          Length = 746

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 18/143 (12%)

Query: 6   SFQEHSETIDL-ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +  E    +DL + + + E L AS   +   +S   G+GK   +++ +L +    + P  
Sbjct: 319 AILEVENLLDLKLEEKQKEALHASSSQKIHIISGGPGTGK-STIIRAILSIFEKISSPKK 377

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           ++    T  AA  M+    +       L          +   + P   D+         +
Sbjct: 378 IILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDL---------V 428

Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147
           +    G+ + TI      ++Q+F
Sbjct: 429 IVDESGM-IDTI------LLQRF 444


>gi|330468250|ref|YP_004405993.1| putative DNA helicase [Verrucosispora maris AB-18-032]
 gi|328811221|gb|AEB45393.1| putative DNA helicase [Verrucosispora maris AB-18-032]
          Length = 736

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRL---LLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
              A V    G+GKT + + RV  L   L        +L  T  +  AA++  R++ +  
Sbjct: 271 NGPARVGGGPGTGKTIVALHRVAYLARQLPPGVD-KPILLTTFNRNLAADLRTRLMALGG 329

Query: 88  A 88
            
Sbjct: 330 E 330


>gi|47086099|ref|NP_998431.1| probable helicase with zinc finger domain [Danio rerio]
 gi|82185991|sp|Q6NYU2|HELZ_DANRE RecName: Full=Probable helicase with zinc finger domain
 gi|42542947|gb|AAH66461.1| Zgc:77407 [Danio rerio]
          Length = 1860

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q V  +L      S +L  TH+
Sbjct: 635 LNAKQKEAILAITTPLSINLPPVLIIGPYGTGKTFTLAQAVKHILKQPE--SRVLICTHS 692

Query: 72  KAAA 75
            +AA
Sbjct: 693 NSAA 696


>gi|116052655|ref|YP_792970.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|32481647|gb|AAP84161.1| putative DNA helicase [Pseudomonas aeruginosa PA14]
 gi|115587876|gb|ABJ13891.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 493

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRLL--------LANA 60
          +  T  +  +         V A AG+GKT  LV         R+L L             
Sbjct: 1  MQWTHEQSPIIQSKAPKILVRAFAGTGKTTTLVGFARSNPTLRILYLCYNSSVEKAAKGK 60

Query: 61 HPSTLLCLT 69
           P  ++C T
Sbjct: 61 FPRNVVCKT 69


>gi|71277859|ref|YP_269479.1| exodeoxyribonuclease V subunit alpha [Colwellia psychrerythraea
           34H]
 gi|71143599|gb|AAZ24072.1| exodeoxyribonuclease V, alpha subunit [Colwellia psychrerythraea
           34H]
          Length = 769

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 22/117 (18%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLL-------- 57
            Q  ++ ++ +     +  +A+   ++  V A   G+GKT+ + + +  L++        
Sbjct: 210 AQVEAQDVESLEIDWQKVAVANAINKNFSVIAGGPGTGKTYTVTKLLAALVMLEQMGLAK 269

Query: 58  -------------ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI 101
                               +  +  T  AA  +S  ++  I+ + +L D+ + AEI
Sbjct: 270 TGKQQAEVAQQKQQGTAVLNIALVAPTGKAAQRLSESIVNAISGFKNLIDDKVLAEI 326


>gi|296413901|ref|XP_002836645.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630477|emb|CAZ80836.1| unnamed protein product [Tuber melanosporum]
          Length = 1106

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 19  QTKSEQLLASDP-------TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLC 67
           +   EQ  A D             +S   G+GKT  +V+  L+L+   ++P   +L 
Sbjct: 391 ELNYEQQKAVDTILQQNYGNVPYLISGPPGTGKTKTIVEVALQLIFTPSNPKHHILL 447


>gi|319738605|ref|NP_956758.2| intron-binding protein aquarius [Danio rerio]
 gi|169642060|gb|AAI60661.1| Zgc:63611 protein [Danio rerio]
          Length = 1525

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT++ VQ ++  L  N      L +TH+  A  
Sbjct: 801 FTPTQIEAIRAGMQPGLTMVVGPPGTGKTNVAVQ-IISNLYHNFPEQRTLIVTHSNQALN 859

Query: 77  EMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++  +++ +     HL      +E L  E    +  + N   +S+   LL  +      L
Sbjct: 860 QLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVN-YVLSRRLELLQEVARLQESL 918

Query: 132 KV 133
            V
Sbjct: 919 DV 920


>gi|225026742|ref|ZP_03715934.1| hypothetical protein EUBHAL_00994 [Eubacterium hallii DSM 3353]
 gi|224955924|gb|EEG37133.1| hypothetical protein EUBHAL_00994 [Eubacterium hallii DSM 3353]
          Length = 806

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 26/174 (14%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRL 55
           NS  E    ++ I++   EQ  A  P          ++  V A  GSGKT         L
Sbjct: 254 NSDLEEKRLVNNINKNMKEQKFALKPAQKFMQENVNKNLVVIAPTGSGKTE------AAL 307

Query: 56  L-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
           L L        L L   K +A ++  R+ +         + + S  + K   +  N +D 
Sbjct: 308 LWLNGEKGFYTLPL---KVSANDIYRRIKDDYN--YKDVELLHSDAMQKYLEESTNAADS 362

Query: 115 SKARHLLITILETPGGLKVQTIH---AFCEAIMQQFPLEANITSHFAIADEEQS 165
              R+    +L  P  L + T+     F    +      A +     I DE QS
Sbjct: 363 IYQRYEKAKLLSNP--LTICTVDQLFKFVYRALGTEIFAATLKYSKVILDEVQS 414


>gi|198425548|ref|XP_002130172.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
           [Ciona intestinalis]
          Length = 636

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 86/233 (36%), Gaps = 46/233 (19%)

Query: 20  TKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75
            +  Q   S    P R   VSA  GSGKT      +++ LL    P+   L ++ T+   
Sbjct: 209 LRDAQRSISHQLFPPRDLCVSAPTGSGKTIAFALPIVQALLQRVVPATRALVVSPTR--- 265

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL---ITILETPGGLK 132
            E+S ++ ++  +         + ++  I       S + + R LL    T L  P  + 
Sbjct: 266 -ELSAQIYKVFVSLCR------NTQLKCILITAAKGSLLQEQRALLNFGKTGLACPADIV 318

Query: 133 VQTI-----H-----AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL----A 178
           V T      H     AF    ++           F + DE    +++E+  +  L     
Sbjct: 319 VATPGRLADHLSQTSAFSLDKLR-----------FLVIDEAD--RMMEQIHQRWLTLVEQ 365

Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLI--SDIISNRTALKLIFFFFSYLW 229
            +  D+ + L +         N   ++ L+  + + ++   L+ +  F   L+
Sbjct: 366 KVYKDSFKPLPQHLALKSVTKNRIPLQKLLFSATLSADPEKLQQLNLFQPRLF 418


>gi|38233746|ref|NP_939513.1| putative helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200007|emb|CAE49676.1| Putative helicase [Corynebacterium diphtheriae]
          Length = 770

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           + +  +  DPTR    V    G+GKT + + RV  LL
Sbjct: 225 REQDDIIRDPTRGVMVVEGGPGTGKTAVALHRVAYLL 261


>gi|254238733|ref|ZP_04932056.1| hypothetical protein PACG_04897 [Pseudomonas aeruginosa C3719]
 gi|126170664|gb|EAZ56175.1| hypothetical protein PACG_04897 [Pseudomonas aeruginosa C3719]
          Length = 493

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRLL--------LANA 60
          +  T  +  +         V A AG+GKT  LV         R+L L             
Sbjct: 1  MQWTHEQSPIIQSKAPKILVRAFAGTGKTTTLVGFAKANPTLRILYLCYNSSVEKAAKGK 60

Query: 61 HPSTLLCLT 69
           P  ++C T
Sbjct: 61 FPRNVVCKT 69


>gi|256396644|ref|YP_003118208.1| hypothetical protein Caci_7542 [Catenulispora acidiphila DSM 44928]
 gi|256362870|gb|ACU76367.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
          Length = 761

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           D+++  + EQ  ++ S    S  V+   G+GKT + + RV  L+  +
Sbjct: 189 DIVATIQREQDVVIRSPADVSVVVTGGPGTGKTAVALHRVAWLMFQH 235


>gi|170016618|ref|YP_001727537.1| Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway,
           ATPase PilB [Leuconostoc citreum KM20]
 gi|169803475|gb|ACA82093.1| Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway,
           ATPase PilB [Leuconostoc citreum KM20]
          Length = 318

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 12/69 (17%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANA 60
           IY N  Q++      +   + +QL A+ P    +V A   GSGKT  L       LL N 
Sbjct: 99  IYTNQQQQN-----WVDDGQFKQLRAAIPNSGLFVIAGPTGSGKTSTL-----YRLLNNI 148

Query: 61  HPSTLLCLT 69
                L LT
Sbjct: 149 AAEK-LVLT 156


>gi|168698677|ref|ZP_02730954.1| hypothetical protein GobsU_04089 [Gemmata obscuriglobus UQM 2246]
          Length = 923

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 20/118 (16%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA------- 76
           + +A+ P    W     G+GKT  L   V R L        +L ++ + AA         
Sbjct: 267 EEMAATPLHLLW--GPPGTGKTTTLGAAVARWLRQG---QRVLVVSTSNAAVDVALKAVL 321

Query: 77  -----EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM-SKARHLLITILETP 128
                E   RVL + ++   +  E+      K+  + P  + + +KA++ L  I E  
Sbjct: 322 SRLQPEEKDRVLRLGSSLDPVVREVTLG--GKLAAQNPKAARLVAKAQNRLADIQEQL 377


>gi|56695288|ref|YP_165636.1| helicase, ATP-dependent, putative [Ruegeria pomeroyi DSS-3]
 gi|56677025|gb|AAV93691.1| helicase, ATP-dependent, putative [Ruegeria pomeroyi DSS-3]
          Length = 465

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L +    L  A                  TL  L  T  AA+ +  R     
Sbjct: 7   AGSGKTLLLAELCKALTTAGVQVVSGDYEGRKSKDRRTLAVLAPTNKAASVLRLRGVPAT 66

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+    +  D    AE     G++P         + +A          PG L    
Sbjct: 67  TIHRILYTPVYDPDYERIAEWLAGNGERPEIEGLSDEALDRAAAFYARNSSIPGALA--- 123

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           ++ PL+       ++ D+ Q + L E
Sbjct: 124 ----AAGLRGSDFITGWKRREEPLDIGFIDEASMLDDRQFEDLKE 164


>gi|94309586|ref|YP_582796.1| type II secretion system protein E [Cupriavidus metallidurans CH34]
 gi|93353438|gb|ABF07527.1| flp pilus assembly ATPase CpaF [Cupriavidus metallidurans CH34]
          Length = 456

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 8   QEHSETIDLISQTK--SEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
            + S+ ++L S T+  ++ L A    + +  VS   GSGKT +L       +L+   P  
Sbjct: 201 LQVSDLVELKSLTQPMAQMLQALAHAKINVLVSGGTGSGKTTLL------NILSGFIPED 254

Query: 65  LLCLTHTKAAAAEMSH----RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH- 119
              +T   AA  ++      R+           +    A +      +P++  + + R  
Sbjct: 255 ERVVTIEDAAELQLRQPHVLRLETRPPNIEGKGEITQRALVRNALRMRPDRIILGEIRGG 314

Query: 120 ---LLITILETPGGLKVQTIHA 138
               ++  + T     + TIHA
Sbjct: 315 EALDMLNAMNTGHEGSLTTIHA 336


>gi|307210786|gb|EFN87169.1| Intron-binding protein aquarius [Harpegnathos saltator]
          Length = 1153

 Score = 39.1 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  
Sbjct: 491 FTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNFPNQRTLIVTHSNQALN 549

Query: 77  EMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++  +++ +     HL      +E L  E    +  + N   ++K   LL+ +      L
Sbjct: 550 QLFEKIMALDIDERHLLRLGHGEEALETEKDFSRYGRVN-YVLAKRLDLLLEVQRLQESL 608

Query: 132 KV 133
            V
Sbjct: 609 NV 610


>gi|270006182|gb|EFA02630.1| hypothetical protein TcasGA2_TC008350 [Tribolium castaneum]
          Length = 947

 Score = 39.1 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
              +    G+GKT  +V+ V ++         +L  T +  AA E++ R++  I A
Sbjct: 482 PYLIFGPPGTGKTMTVVESVKQIYKKGN--EKILICTPSNNAANEVTKRLINTIPA 535


>gi|189236740|ref|XP_001815304.1| PREDICTED: similar to Mov10, Moloney leukemia virus 10, homolog
           [Tribolium castaneum]
          Length = 765

 Score = 39.1 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
              +    G+GKT  +V+ V ++         +L  T +  AA E++ R++  I A
Sbjct: 300 PYLIFGPPGTGKTMTVVESVKQIYKKGN--EKILICTPSNNAANEVTKRLINTIPA 353


>gi|168051009|ref|XP_001777949.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670709|gb|EDQ57273.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 791

 Score = 39.1 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 16/120 (13%)

Query: 20  TKSEQLLAS----DPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
               Q  A     D  R   V     G+GKT ++ + + + ++       +L    T AA
Sbjct: 316 LDESQKRAIEMGLDRKRPVVVIQGPPGTGKTSVVTELIEKAVMRG---ERVLATAPTNAA 372

Query: 75  AAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILE 126
              +  R+         +   + ++  + S  ++ I  K     + D+ + R  L + L 
Sbjct: 373 VDNIVERLANAGLNVVRVGNPARVAPAVCSRSLSFIVDKSLTTFRGDLVRRRANLRSDLR 432


>gi|117620037|ref|YP_857223.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561444|gb|ABK38392.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 408

 Score = 39.1 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHT 71
           ++  + + + A    R    SA  G+GKT      +L+ L+ N  P     + +L LT T
Sbjct: 1   MTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLVDNPAPVQPSNARVLILTPT 60

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +    E++ +V   I  ++    + L      I G         K +     I+ TPG L
Sbjct: 61  R----ELAAQVASNINDFA----KHLDITTLTIYGGGKQDVQARKLKAGAHIIVATPGRL 112


>gi|148643754|ref|YP_001274267.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|148552771|gb|ABQ87899.1| predicted helicase [Methanobrevibacter smithii ATCC 35061]
          Length = 2225

 Score = 39.1 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +S  E+S+   ++    S+     D    R+  V    G+GK+  +V  +  LL     
Sbjct: 281 DSQLEYSKMYQVLDADSSQIAAIQDVKAGRNLVVEGPPGTGKSQTIVNLIAELLAEGKS 339


>gi|86157254|ref|YP_464039.1| superfamily I DNA/RNA helicase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773765|gb|ABC80602.1| Superfamily I DNA and RNA helicase-like protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 737

 Score = 39.1 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           I  +      + +A+   R   V  +AGSGKT + + R+ R+      P  
Sbjct: 266 ITALLDPDQYEAVAAPADRPLLVLGSAGSGKTTVALHRLARIAFE--DPRR 314


>gi|134288383|ref|YP_001110546.1| superfamily I DNA/RNA helicase-like protein [Burkholderia
          vietnamiensis G4]
 gi|134133033|gb|ABO59743.1| superfamily I DNA and RNA helicases-like protein [Burkholderia
          vietnamiensis G4]
          Length = 599

 Score = 39.1 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
          +S T  +            V A AG+GKT  LV+       A A+P   +L L +   A 
Sbjct: 1  MSATSEQLKAVESTVHRLIVQAYAGAGKTFTLVE------FALANPHDRILYLAY-NKAI 53

Query: 76 AE 77
           E
Sbjct: 54 QE 55


>gi|325285787|ref|YP_004261577.1| AAA ATPase [Cellulophaga lytica DSM 7489]
 gi|324321241|gb|ADY28706.1| AAA ATPase [Cellulophaga lytica DSM 7489]
          Length = 561

 Score = 39.1 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           + + L      ++ +++ +AG+GKT++L  + +  L     P  +   T    AA  M+ 
Sbjct: 3   QQKALALLKSGKNVFLTGSAGTGKTYVL-NQYITYLKKRRIPVAITAST--GIAATHMN- 58

Query: 81  RVLEIITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
                I +W+     +++  A +  ++ KK  K  +  A+ L+I  +
Sbjct: 59  --GMTIHSWAGFGIKEQLTRANLNSMKEKKYLKEHLENAKILIIDEI 103


>gi|92109628|ref|YP_571915.1| ATPase [Nitrobacter hamburgensis X14]
 gi|91802710|gb|ABE65083.1| ATPase associated with various cellular activities, AAA_5
           [Nitrobacter hamburgensis X14]
          Length = 734

 Score = 39.1 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           T  + +      ++  +    G+GKT  L +R+   L+    PS L+ +  
Sbjct: 459 TLEQAIDLLKTKKNLVLQGPPGTGKTW-LAKRLGYALIGEKDPSRLMAVQF 508


>gi|85859568|ref|YP_461770.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
 gi|85722659|gb|ABC77602.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
          Length = 968

 Score = 39.1 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 37/188 (19%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
           +S +V+A+AGSGKT  L + V   L                        R  E + A + 
Sbjct: 26  KSLFVTASAGSGKTFRLTREVRSHL-----------------------DREGEFVVAATF 62

Query: 92  LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151
                   E   +      K         ++        +   TI A     +       
Sbjct: 63  TRAAAAEMEKRILDAIDEGKESPVDKLRFIMRA----ARVHFSTIDALFHQFLSTEAYV- 117

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
                  +AD+ +   +   A         +  + E       IL +  D     LI+++
Sbjct: 118 -----PQLADDHEKAIIATLADTRFFQHPRVLADIESIVIAARILHLQPDS----LIAEL 168

Query: 212 ISNRTALK 219
              R +L+
Sbjct: 169 DKGRESLE 176


>gi|126463379|ref|YP_001044493.1| AAA ATPase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105043|gb|ABN77721.1| AAA ATPase [Rhodobacter sphaeroides ATCC 17029]
          Length = 566

 Score = 39.1 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 53/165 (32%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L      L+ A                  TL  L  T  AA+ +  R     
Sbjct: 108 AGSGKTMLLASLTKALIEAGLEVVSGDWEGRKRKERRTLAILAPTNKAASVLRLRGVPAT 167

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+ +  +       AE     GK+P      ++ + +A+     +   PG L    
Sbjct: 168 TIHRILYSPVYDPQYERIAEWLAGNGKRPEVEGLSETALDRAKAFYEQVPSIPGALA--- 224

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           +  PL+       ++ DE Q   L E
Sbjct: 225 ----AAGLRGSDFIKGWKRRDEPLDVGFVDEASMLDERQFDDLRE 265


>gi|314923609|gb|EFS87440.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1]
          Length = 1061

 Score = 39.1 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R + +    S +L L  T+ +A
Sbjct: 4   MHGWDGLQARVLADDAGTVLVMGGPGTGRTSLCLEIAARHVASGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|157123110|ref|XP_001660012.1| DNA-binding protein smubp-2 [Aedes aegypti]
 gi|108874505|gb|EAT38730.1| DNA-binding protein smubp-2 [Aedes aegypti]
          Length = 699

 Score = 39.1 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
             SDP     V    G+GKT  +V+ +++ + ++   + +L    + AA  E++ R+++ 
Sbjct: 257 RVSDPL-PYIVFGPPGTGKTTTIVEAIVQ-ICSHHPTARILVAAQSNAACDEVAIRLMKH 314

Query: 86  IT 87
           + 
Sbjct: 315 LA 316


>gi|226310740|ref|YP_002770634.1| DNA helicase involved in recombination [Brevibacillus brevis NBRC
           100599]
 gi|226093688|dbj|BAH42130.1| probable DNA helicase involved in recombination [Brevibacillus
           brevis NBRC 100599]
          Length = 786

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           Q  S+   +++  + +Q       RS    VS  AGSGKT   +QR+  LL
Sbjct: 201 QADSQMKSIVATIQRDQNRIIRNERSRLVIVSGAAGSGKTSAALQRIAYLL 251


>gi|120554248|ref|YP_958599.1| hypothetical protein Maqu_1323 [Marinobacter aquaeolei VT8]
 gi|120324097|gb|ABM18412.1| hypothetical protein Maqu_1323 [Marinobacter aquaeolei VT8]
          Length = 190

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 47  ILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           +LV     L+ +  A  S +L L     AAAEM  R+   +  
Sbjct: 103 VLVGCAGYLINSGLARASDILMLVFANKAAAEMQARIDNRLGR 145


>gi|314966447|gb|EFT10546.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2]
 gi|315103756|gb|EFT75732.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2]
 gi|327327269|gb|EGE69045.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL103PA1]
          Length = 1061

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R + +    S +L L  T+ +A
Sbjct: 4   MHGWDGLQARVLADDAGTVLVMGGPGTGRTSLCLEIAARHVASGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|307107549|gb|EFN55791.1| hypothetical protein CHLNCDRAFT_145259 [Chlorella variabilis]
          Length = 158

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 11  SETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67
           S+ +D I+ +  +Q + +     ++ + + +AG+GK+ +L Q V  L          L+ 
Sbjct: 48  SQAVDSIALSDEQQRVVALVKAGKNVFYTGDAGTGKSFLLNQIVAELQTKHGDEFGRLVA 107

Query: 68  LTHTKAAAA 76
           +T   AA  
Sbjct: 108 VT---AATG 113


>gi|289423874|ref|ZP_06425667.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289155651|gb|EFD04323.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 593

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72
            +  +   AG+GKT I++ R+++L  +  +P    L LT TK
Sbjct: 210 GNHVILGGAGTGKTSIMLARLIKL--SKIYPHHKFLFLTFTK 249


>gi|239947394|ref|ZP_04699147.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921670|gb|EER21694.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 1382

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLL----ASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           I+ N+  +    ID ++     Q           +   +    AG+GK+ +LVQ     +
Sbjct: 326 IHFNNIIKLKSAIDNLASVNEAQRESLQHILINNQGIRILQGRAGTGKSQVLVQ--AYKI 383

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHR 81
             N H   ++ L+ T  AA+E+  +
Sbjct: 384 ATN-HGQNIIGLSPTHKAASELKSK 407


>gi|222444816|ref|ZP_03607331.1| hypothetical protein METSMIALI_00429 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434381|gb|EEE41546.1| hypothetical protein METSMIALI_00429 [Methanobrevibacter smithii
           DSM 2375]
          Length = 2226

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +S  E+S+   ++    S+     D    R+  V    G+GK+  +V  +  LL     
Sbjct: 281 DSQLEYSKMYQVLDADSSQIAAIQDVKAGRNLVVEGPPGTGKSQTIVNLIAELLAEGKS 339


>gi|195156938|ref|XP_002019353.1| GL12284 [Drosophila persimilis]
 gi|194115944|gb|EDW37987.1| GL12284 [Drosophila persimilis]
          Length = 1499

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 88/235 (37%), Gaps = 25/235 (10%)

Query: 18   SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 815  TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNQPNQRTLIVTHSNQALNQ 873

Query: 78   MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +  +++ +     HL      +E L  E    +  + N   ++K   LL  +      L 
Sbjct: 874  LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLNQVQRLQEALG 932

Query: 133  VQ-----TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            V      T    CE     +    N+ + +    ++Q +   EEA    L ++  + +  
Sbjct: 933  VSGDNAYT----CET--AGYFYLYNVMARWE-KFQDQIRIHQEEADLDKLRALF-EKDFP 984

Query: 188  LKKAFYEILE-ISNDEDIETLISDIISN----RTALKLIFFFFSYLWRRKIIEKS 237
              K F +  + +      E L++   SN          +  F ++   R  +++S
Sbjct: 985  FGKFFADAPQPLFKGSTYEDLLATAESNFRYISDIFTELEEFRAFELLRTGLDRS 1039


>gi|115712839|ref|XP_784320.2| PREDICTED: similar to PPAR-alpha interacting complex protein 285
            [Strongylocentrotus purpuratus]
 gi|115955051|ref|XP_001182945.1| PREDICTED: similar to PPAR-alpha interacting complex protein 285
            [Strongylocentrotus purpuratus]
          Length = 3249

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 4    HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
             NS QE  + + LI   ++    A+  +    +    G+GKTH L + + R L       
Sbjct: 1005 LNSRQE--QVVRLIKSLETRGKEATTYSGPTMILGPFGTGKTHTLAKAIQRTLTERKDAK 1062

Query: 64   TLLCLTHTKAAA 75
             L+C TH+ +AA
Sbjct: 1063 FLIC-THSNSAA 1073


>gi|50842800|ref|YP_056027.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|50840402|gb|AAT83069.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|315105904|gb|EFT77880.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
          Length = 1061

 Score = 39.1 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R + +    S +L L  T+ +A
Sbjct: 4   MHGWDGLQARVLADDAGTVLVMGGPGTGRTSLCLEIAARHVASGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|182625733|ref|ZP_02953501.1| putative helicase [Clostridium perfringens D str. JGS1721]
 gi|177908995|gb|EDT71477.1| putative helicase [Clostridium perfringens D str. JGS1721]
          Length = 706

 Score = 39.1 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           M+  N+  +  + I +  Q + ++++  + T +  V+  AGSGKT I + RV  LL
Sbjct: 188 MVLSNNSSDKLKDIIMTIQQEQDEIIRKERTSNIVVNGVAGSGKTTIALHRVAYLL 243


>gi|118470846|ref|YP_886307.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2
           155]
 gi|118172133|gb|ABK73029.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 1045

 Score = 39.1 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 59/183 (32%), Gaps = 36/183 (19%)

Query: 29  DPTRSAWV--SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
           +P  +  V      G+GK+ +LV   ++ +LA A P ++L LT                 
Sbjct: 18  EPGSNGVVRLLGGPGTGKSSLLVDTAVQHILAGADPESVLLLT----------------- 60

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146
                 S  + +A    I  +      +   R  L           V+T+H++  A+++ 
Sbjct: 61  -----GSARLRTAARAAITARLLGAGTVGVVREPL-----------VRTVHSYAFAVLRL 104

Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
                       +    +   +I E     L           ++ +  +       ++  
Sbjct: 105 AAQRNG-DPPPRLITSAEQDGIIRELLAGDLEDGHRSPVGWPEQLWPALTTAGFATELRD 163

Query: 207 LIS 209
           L++
Sbjct: 164 LMA 166


>gi|21228807|ref|NP_634729.1| type I restriction-modification system restriction subunit
           [Methanosarcina mazei Go1]
 gi|20907326|gb|AAM32401.1| type I restriction-modification system restriction subunit
           [Methanosarcina mazei Go1]
          Length = 893

 Score = 39.1 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
               D  R+  V+   G+GKT  +V  + RL+ A  
Sbjct: 173 RAIVDRKRTMLVAMATGTGKTFTIVNLIYRLIKAGV 208


>gi|315092776|gb|EFT64752.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1]
          Length = 1058

 Score = 39.1 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R + +    S +L L  T+ +A
Sbjct: 1   MHGWDGLQARVLADDAGTVLVMGGPGTGRTSLCLEIAARHVASGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|195454777|ref|XP_002074399.1| GK10580 [Drosophila willistoni]
 gi|194170484|gb|EDW85385.1| GK10580 [Drosophila willistoni]
          Length = 2057

 Score = 39.1 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
           ++  + E + A     S       +    G+GKT+ L Q + +LL   A P   +L  TH
Sbjct: 820 LNAKQKEAVNAITTALSIRLPPILLIGPFGTGKTYTLAQAIKQLL---AQPEAKILICTH 876

Query: 71  TKAAA 75
           + +AA
Sbjct: 877 SNSAA 881


>gi|298480710|ref|ZP_06998906.1| nuclease-related domain protein [Bacteroides sp. D22]
 gi|298273144|gb|EFI14709.1| nuclease-related domain protein [Bacteroides sp. D22]
          Length = 729

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 41  GSGKTHILVQR----VLRLLLANAHPSTLLCLTH 70
           GSGKT IL  R      R L  N +P  +L LT 
Sbjct: 243 GSGKTTILAARAVQAYKRALERNDNP-RILILTF 275


>gi|302887514|ref|XP_003042645.1| hypothetical protein NECHADRAFT_81082 [Nectria haematococca mpVI
           77-13-4]
 gi|256723557|gb|EEU36932.1| hypothetical protein NECHADRAFT_81082 [Nectria haematococca mpVI
           77-13-4]
          Length = 696

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TL 65
            ++H + +      K  ++     T++  VSA  GSGKT   V+ ++      A+P   +
Sbjct: 50  LRQHRKNLPFAPSEKQHRIAKLCRTKNVVVSARPGSGKTAT-VEAIIA-----ANPDKRI 103

Query: 66  LCLTHTKAAAAEMSHRV 82
             L  +++   E S R+
Sbjct: 104 CALAFSRSLQQETSQRL 120


>gi|296139997|ref|YP_003647240.1| exodeoxyribonuclease V, subunit alpha [Tsukamurella paurometabola
           DSM 20162]
 gi|296028131|gb|ADG78901.1| exodeoxyribonuclease V, alpha subunit [Tsukamurella paurometabola
           DSM 20162]
          Length = 598

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKA 73
           D     +     AS   R+  ++   G+GKT+  V R+L LL     P   +     T  
Sbjct: 153 DPGPDRQRLAAAASVLGRTTVLAGGPGTGKTYT-VARILALLFDQHGPGLRVGLAAPTGR 211

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           AAA+++  V +       L   I +  I ++ G KP  +   +
Sbjct: 212 AAAQLAGEVRKQ-GEALGLPRHIPAQTIHRMLGFKPGSASRFR 253


>gi|261350612|ref|ZP_05976029.1| DNA helicase related protein [Methanobrevibacter smithii DSM 2374]
 gi|288861395|gb|EFC93693.1| DNA helicase related protein [Methanobrevibacter smithii DSM 2374]
          Length = 2226

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +S  E+S+   ++    S+     D    R+  V    G+GK+  +V  +  LL     
Sbjct: 281 DSQLEYSKMYQVLDADSSQIAAIQDVKAGRNLVVEGPPGTGKSQTIVNLIAELLAEGKS 339


>gi|297685971|ref|XP_002820548.1| PREDICTED: f-box only protein 18-like [Pongo abelii]
          Length = 1043

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 441 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 494

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 495 SIAKQAERVF 504


>gi|297300441|ref|XP_002805594.1| PREDICTED: f-box only protein 18-like [Macaca mulatta]
          Length = 819

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 577 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 630

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 631 SIAKQAERVF 640


>gi|296206109|ref|XP_002750069.1| PREDICTED: F-box only protein 18 isoform 3 [Callithrix jacchus]
          Length = 971

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 367 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 420

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 421 SIAKQAERVF 430


>gi|296206105|ref|XP_002750067.1| PREDICTED: F-box only protein 18 isoform 1 [Callithrix jacchus]
 gi|296206107|ref|XP_002750068.1| PREDICTED: F-box only protein 18 isoform 2 [Callithrix jacchus]
          Length = 1045

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 441 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 494

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 495 SIAKQAERVF 504


>gi|302874540|ref|YP_003843173.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307690849|ref|ZP_07633295.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302577397|gb|ADL51409.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 763

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 10  HSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            S+  D+++  + EQ  ++ +  +    +  +AGSGKT + + R+  +L
Sbjct: 193 SSKLKDVVATIQKEQNDVIRASISGPLIIQGSAGSGKTTVALHRLAYIL 241


>gi|238062908|ref|ZP_04607617.1| hypothetical protein MCAG_03874 [Micromonospora sp. ATCC 39149]
 gi|237884719|gb|EEP73547.1| hypothetical protein MCAG_03874 [Micromonospora sp. ATCC 39149]
          Length = 1069

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA-----AAEMSHR 81
            V    G+GKT +L + +  L+        +L ++ T  A     A  M HR
Sbjct: 132 LVWGPPGTGKTRVLSEAISSLIADG---KRVLLVSATNIAVDNALAGVMRHR 180


>gi|291457555|ref|ZP_06596945.1| DNA or RNA helicase, Superfamily I [Bifidobacterium breve DSM
          20213]
 gi|291380608|gb|EFE88126.1| DNA or RNA helicase, Superfamily I [Bifidobacterium breve DSM
          20213]
          Length = 614

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6  SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
          S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 26 SSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL 78


>gi|163741800|ref|ZP_02149190.1| helicase, ATP-dependent, putative [Phaeobacter gallaeciensis 2.10]
 gi|161384973|gb|EDQ09352.1| helicase, ATP-dependent, putative [Phaeobacter gallaeciensis 2.10]
          Length = 512

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 42/166 (25%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP--------------STLLCLTHTKAAAAEMSHR---- 81
           AGSGKT +L +    L  A                   TL  L  T  AA+ +  R    
Sbjct: 51  AGSGKTLLLAELYKALEKAGVEVVSGDYESRKKNEDRRTLAILAPTNKAASVLRLRGVPA 110

Query: 82  --VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQ 134
             +  I+    +  +    AE     G +P      +  +++A+         PG L   
Sbjct: 111 TTIHRILYTPVYDPEYERIAEWLAGSGDEPEIEGVTEEALARAKAFYERNKSIPGALA-- 168

Query: 135 TIHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                   +           ++ PL+       ++ D+ Q + L E
Sbjct: 169 -----AAGLRGSDFITGWKRREEPLDIGFIDEASMLDDRQFQDLKE 209


>gi|57208810|emb|CAI41075.1| F-box protein, helicase, 18 [Homo sapiens]
          Length = 404

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 176 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 229

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 230 SIAKQAERVF 239


>gi|119606831|gb|EAW86425.1| F-box protein, helicase, 18, isoform CRA_b [Homo sapiens]
          Length = 986

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 365 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 418

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 419 SIAKQAERVF 428


>gi|119606830|gb|EAW86424.1| F-box protein, helicase, 18, isoform CRA_a [Homo sapiens]
          Length = 1060

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 439 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 492

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 493 SIAKQAERVF 502


>gi|114629265|ref|XP_507640.2| PREDICTED: F-box only protein, helicase, 18 [Pan troglodytes]
          Length = 1257

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 626 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 679

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 680 SIAKQAERVF 689


>gi|109731672|gb|AAI13376.1| F-box protein, helicase, 18 [Homo sapiens]
          Length = 1043

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 439 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 492

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 493 SIAKQAERVF 502


>gi|51873983|gb|AAH80629.1| FBXO18 protein [Homo sapiens]
          Length = 978

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 374 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 427

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 428 SIAKQAERVF 437


>gi|30795117|ref|NP_116196.3| F-box only protein 18 isoform 1 [Homo sapiens]
 gi|57208809|emb|CAI41074.1| F-box protein, helicase, 18 [Homo sapiens]
 gi|119606832|gb|EAW86426.1| F-box protein, helicase, 18, isoform CRA_c [Homo sapiens]
          Length = 1094

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 490 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 543

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 544 SIAKQAERVF 553


>gi|33187691|gb|AAP97700.1|AF454502_1 hypothetical protein [Homo sapiens]
          Length = 1042

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 438 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 491

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 492 SIAKQAERVF 501


>gi|33187701|gb|AAP97705.1|AF456237_1 testis protein [Homo sapiens]
          Length = 1043

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 439 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 492

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 493 SIAKQAERVF 502


>gi|21666261|gb|AAM73631.1|AF380349_1 F-box DNA helicase 1 [Homo sapiens]
 gi|83406046|gb|AAI10885.1| FBXO18 protein [Homo sapiens]
 gi|119606833|gb|EAW86427.1| F-box protein, helicase, 18, isoform CRA_d [Homo sapiens]
 gi|168277542|dbj|BAG10749.1| F-box only protein 18 [synthetic construct]
 gi|189054876|dbj|BAG37614.1| unnamed protein product [Homo sapiens]
          Length = 969

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 365 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 418

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 419 SIAKQAERVF 428


>gi|30795119|ref|NP_835363.1| F-box only protein 18 isoform 2 [Homo sapiens]
 gi|45476952|sp|Q8NFZ0|FBX18_HUMAN RecName: Full=F-box only protein 18; AltName: Full=F-box DNA
           helicase 1
 gi|57208808|emb|CAI41073.1| F-box protein, helicase, 18 [Homo sapiens]
 gi|109731015|gb|AAI13378.1| F-box protein, helicase, 18 [Homo sapiens]
 gi|119606834|gb|EAW86428.1| F-box protein, helicase, 18, isoform CRA_e [Homo sapiens]
          Length = 1043

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 439 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 492

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 493 SIAKQAERVF 502


>gi|21754585|dbj|BAC04535.1| unnamed protein product [Homo sapiens]
          Length = 1043

 Score = 39.1 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 439 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 492

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 493 SIAKQAERVF 502


>gi|149369760|ref|ZP_01889612.1| methionine synthase I [unidentified eubacterium SCB49]
 gi|149357187|gb|EDM45742.1| methionine synthase I [unidentified eubacterium SCB49]
          Length = 934

 Score = 39.1 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 21/94 (22%)

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFA----------IADEE----QSKKLIEEAK 173
           P  L +QTIH F  AI++ +    + +  F           I D+E    Q+K+L E+AK
Sbjct: 625 PNVLGIQTIHNFDIAILRDY---IDWSPFFRSWDLHGKFPEILDDEVVGPQAKELFEDAK 681

Query: 174 KSTLASIMLDNNEELKKAFYEILEIS--NDEDIE 205
              L + ++       KA + + E +  N++DIE
Sbjct: 682 --VLLNKIISEKLLSAKAVFGLFEANTINEDDIE 713


>gi|45946135|gb|AAH32674.2| FBXO18 protein [Homo sapiens]
          Length = 908

 Score = 39.1 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 304 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 357

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 358 SIAKQAERVF 367


>gi|321261778|ref|XP_003195608.1| DNA helicase [Cryptococcus gattii WM276]
 gi|317462082|gb|ADV23821.1| DNA helicase, putative [Cryptococcus gattii WM276]
          Length = 748

 Score = 39.1 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAA 74
             G+GKTH LV+ + +LL   A P+      +L  T +  A
Sbjct: 259 PPGTGKTHTLVELIFQLLSRTASPNTTLPPRILITTPSNLA 299


>gi|261856214|ref|YP_003263497.1| P-type conjugative transfer ATPase TrbB [Halothiobacillus
           neapolitanus c2]
 gi|261836683|gb|ACX96450.1| P-type conjugative transfer ATPase TrbB [Halothiobacillus
           neapolitanus c2]
          Length = 346

 Score = 39.1 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 11  SETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           S   D ++   S +L ++   + +  V    GSGKT  L   +L  L        ++ + 
Sbjct: 149 SHAADWLNLALSTRLESAIREKMNILVVGGTGSGKT-TLANALLHSLSEQCPHDRIVAIE 207

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE--- 126
            T     E+  RV   +   +      +S  +      +P++  + + R      L    
Sbjct: 208 DT----MELQVRVENAVLLRAS-EQVPMSRLLRATMRLRPDRIIVGEVRGGEAYTLLKSW 262

Query: 127 ---TPGGLKVQTIHA 138
               PGGL   TIHA
Sbjct: 263 NSGHPGGLA--TIHA 275


>gi|163788848|ref|ZP_02183293.1| DEAD/DEAH box helicase-like protein [Flavobacteriales bacterium
           ALC-1]
 gi|159876085|gb|EDP70144.1| DEAD/DEAH box helicase-like protein [Flavobacteriales bacterium
           ALC-1]
          Length = 1000

 Score = 39.1 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 43/220 (19%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRL---LLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            +   +  +AGSGK++    L  +++ L           T++ +T           R   
Sbjct: 304 GQKYLIQHSAGSGKSNSISWLAHQLVGLHNKAGNKTIFDTVIVIT----------DR--- 350

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144
                  + D+ +   I + Q  K     +++    L T LE    + + TI        
Sbjct: 351 ------RVLDKQIRDNIKQYQQVKGVVQAITEGSKQLKTALEEGKKIVITTI-------- 396

Query: 145 QQFPL---EAN-ITS-HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-- 197
           Q+FP    E   +   +F I  +E    L  +  +    ++   ++EE  ++  E  +  
Sbjct: 397 QKFPHIVEEIGDLPGTNFGIIIDEAHSSLSGQMARKLNETLAKVSDEEELQSDLENYDEN 456

Query: 198 ISNDEDIETLISDIISNRTALK--LIFFFFSYLWRRKIIE 235
            SN+   E LI  ++  R  L     F F +   + K +E
Sbjct: 457 ESNEVTGEDLIRAMVKARKLLPNASYFAFTATP-KNKTLE 495


>gi|158286575|ref|XP_308817.4| AGAP006939-PA [Anopheles gambiae str. PEST]
 gi|157020533|gb|EAA04125.5| AGAP006939-PA [Anopheles gambiae str. PEST]
          Length = 1223

 Score = 39.1 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE----------IITA 88
             G+GKT  +V+ ++  L+AN   + L+ +T + +AA  ++ R+             + A
Sbjct: 747 PPGTGKTVTIVE-LIHQLIANVPSARLIVVTPSNSAAYLITERLARGGVLEPGDFIRLVA 805

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            S +  E +   + +         D+++ R     +L T  GL+
Sbjct: 806 MSQVEREAVPEHLAQYCA----TVDVAEERSTFGDVLVTESGLR 845


>gi|213418920|ref|ZP_03351986.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 1068

 Score = 39.1 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
           L+          V TIH FC+ ++     E+ +     + ++E    L  +A        
Sbjct: 1   LLLAERQMDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDE--SLLRYQACADFWRRH 58

Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDI 211
                 ++ +  +++      +  + L+ DI
Sbjct: 59  CYPLPRDIAQVVFDVW-----KGPKALLKDI 84


>gi|118618003|ref|YP_906335.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
 gi|118570113|gb|ABL04864.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
          Length = 1057

 Score = 39.1 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 30/174 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V    G+GK+ +LVQ  +  + A A P ++L LT     +  M  R    +T        
Sbjct: 23  VLGGPGTGKSALLVQAAIAHIAAGADPESVLLLT----GSGRMGMRARSSLTT------- 71

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
            L    T   G+   +  + ++                  +H++  A++++        +
Sbjct: 72  ALLRSHTTGTGRAAVREPLVRS------------------VHSYAYAVLRRAAERTG-DA 112

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
              +    +   +I E     L       +   +     +       ++  L++
Sbjct: 113 PPRLLTSAEQDAIIRELLAGDLEDGPSAGSAWPRHLLPALTTAGFATELRNLLA 166


>gi|320457834|dbj|BAJ68455.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 759

 Score = 39.1 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|312971341|ref|ZP_07785516.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 1827-70]
 gi|310335938|gb|EFQ01138.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 1827-70]
          Length = 367

 Score = 39.1 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           Q L     ++  +    G+GKT  L +R+   L+    P  +  +  
Sbjct: 98  QRLID--KKNLILQGPPGTGKTW-LARRLAYCLMGEKAPERISAVQF 141


>gi|259415102|ref|ZP_05739024.1| ATPase [Silicibacter sp. TrichCH4B]
 gi|259349012|gb|EEW60766.1| ATPase [Silicibacter sp. TrichCH4B]
          Length = 517

 Score = 39.1 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L +    L  A                  TL  L  T  AA+ +  R     
Sbjct: 56  AGSGKTLLLAEFYKALAAAGVDVVSGDYESRKKADKRTLAILAPTNKAASVLRLRGVPAT 115

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+    +  +    AE    +G++P      +  +++A     T    PG L    
Sbjct: 116 TIHRILYTPVYDPEYERIAEWLAGEGERPEIEGLSEEALARAEAFYATNKSMPGALA--- 172

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           ++ PL+       ++ D  Q + L E
Sbjct: 173 ----AAGLRGSDFITGWKRREEPLDIGFVDEASMLDNRQFEDLKE 213


>gi|255528277|ref|ZP_05395092.1| putative helicase [Clostridium carboxidivorans P7]
 gi|255508029|gb|EET84454.1| putative helicase [Clostridium carboxidivorans P7]
          Length = 748

 Score = 39.1 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           S    S+  ++++  + EQ  ++ ++  ++  V   AGSGKT I + R+  +L  +  
Sbjct: 194 SKSTDSKMKNIVTTIQREQNKVIRNEDYKNLIVQGPAGSGKTSIALHRIAYILYKHRD 251


>gi|225451679|ref|XP_002276467.1| PREDICTED: similar to DEAD/DEAH box helicase family protein [Vitis
           vinifera]
          Length = 540

 Score = 39.1 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 29/176 (16%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHI-LVQRVLRL--LLANAHPST----LLC 67
           ++ +  + + + A+   ++  VSA+ GSGKT   LV  V R   +  +  P+      + 
Sbjct: 158 EIPTPVQMQAIPAALVGKNLLVSADTGSGKTASFLVPIVSRCTSIRPDHSPNQKNPLAMV 217

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           LT T+         +   +   + L  + L  +   + G       + + +  +  I+ T
Sbjct: 218 LTPTRE--------LCMQVEEQAKLLGKGLPFKTALVVGGDAMPRQLHRIQQGVELIVGT 269

Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIML 182
           PG L    I      ++ +   E  +   F  + DE     ++E   +  +  I  
Sbjct: 270 PGRL----ID-----LLSKH--EIELDDVFMLVLDEVDC--MLERGFRDQVMQIYR 312


>gi|325270487|ref|ZP_08137088.1| hypothetical protein HMPREF9141_2298 [Prevotella multiformis DSM
           16608]
 gi|324987180|gb|EGC19162.1| hypothetical protein HMPREF9141_2298 [Prevotella multiformis DSM
           16608]
          Length = 565

 Score = 39.1 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 41  GSGKTHILVQR----VLRLLLANAHPSTLLCLTH 70
           GSGKT +L  R      R L  N +P  +L LT 
Sbjct: 243 GSGKTTVLAARAVQAYKRALERNNNP-RVLILTF 275


>gi|213691740|ref|YP_002322326.1| narrowly conserved hypothetical protein with helicase motifs
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523201|gb|ACJ51948.1| narrowly conserved hypothetical protein with helicase motifs
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 776

 Score = 39.1 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 188 SSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL 240


>gi|172037191|ref|YP_001803692.1| putative UvrD/REP helicase [Cyanothece sp. ATCC 51142]
 gi|171698645|gb|ACB51626.1| putative UvrD/REP helicase [Cyanothece sp. ATCC 51142]
          Length = 788

 Score = 39.1 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 52/161 (32%)

Query: 5   NSFQEH-SETIDLI--SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ-------RVLR 54
           NSF E+ S T+D +  S    +Q L         +SA  G+GK+H L         R   
Sbjct: 10  NSFPENLSITLDKLRNSLRPGQQQLGYWEGGKMAISAVPGAGKSHSLAVAAAIIIARY-- 67

Query: 55  LLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
                 HP   L+ +T+T++AAA +  ++ E +                           
Sbjct: 68  ----QLHPRNQLIIVTYTRSAAAGIKAKIKERLKELKIPQT------------------- 104

Query: 114 MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                           G  VQT+H     I  + P  + + 
Sbjct: 105 ----------------GFMVQTLHGLALNIATRHPDLSQLN 129


>gi|317483061|ref|ZP_07942062.1| I DNA and RNA helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915467|gb|EFV36888.1| I DNA and RNA helicase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 759

 Score = 39.1 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|224132094|ref|XP_002321254.1| predicted protein [Populus trichocarpa]
 gi|222862027|gb|EEE99569.1| predicted protein [Populus trichocarpa]
          Length = 1152

 Score = 38.7 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 17  ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           ++  +   +L +   +  A +    G+GKT  LV  V  +L+  A   ++L  ++T +A
Sbjct: 746 LNGDQRRAILKTLTAKDYALILGMPGTGKTSTLVHAVKAMLMRGA---SILLTSYTNSA 801


>gi|152975742|ref|YP_001375259.1| UvrD/REP helicase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024494|gb|ABS22264.1| UvrD/REP helicase [Bacillus cytotoxicus NVH 391-98]
          Length = 780

 Score = 38.7 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           N      ++I    Q +  Q++ ++ +R   V   AGSGKT   +QR+  LL
Sbjct: 200 NHANTQMKSIVSTIQKEQNQIIRNETSRLLIVQGAAGSGKTSAALQRIAYLL 251


>gi|300858357|ref|YP_003783340.1| hypothetical protein cpfrc_00939 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685811|gb|ADK28733.1| hypothetical protein cpfrc_00939 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330626|gb|ADL20820.1| Putative helicase [Corynebacterium pseudotuberculosis 1002]
          Length = 774

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + +Q++  +      V    G+GKT + + R+  LL
Sbjct: 229 QREQDQIIRDETRGVMVVEGGPGTGKTAVALHRIAYLL 266


>gi|296454442|ref|YP_003661585.1| hypothetical protein BLJ_1305 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183873|gb|ADH00755.1| conserved hypothetical protein with helicase motifs
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 759

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|303273970|ref|XP_003056310.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462394|gb|EEH59686.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1383

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 13/133 (9%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            + S T++ +  T ++    S   +     V    G+GKT     ++L  L  N      
Sbjct: 797 NQRSLTMNRVRFTPAQVEAISSGVQPGLTMVVGPPGTGKTDT-AAQILHCLYCNEPNQRT 855

Query: 66  LCLTHTKAAAAE------MSH---RVLEIITAWSHLSDEILS-AEITKIQGKKPNKSDMS 115
           L +TH+ AA  +      M     R L  +       D  L  +   ++      + ++ 
Sbjct: 856 LLITHSNAALNDLFQKLLMRDVPSRYLLRLGQGESDLDTDLDFSRAGRVNAMLIRRLELL 915

Query: 116 KARHLLITILETP 128
           +   +L + L  P
Sbjct: 916 REVEMLASCLGQP 928


>gi|12698200|dbj|BAB21927.1| hypothetical protein [Macaca fascicularis]
          Length = 411

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 176 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 229

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 230 SIAKQAERVF 239


>gi|58271134|ref|XP_572723.1| DNA helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57228982|gb|AAW45416.1| DNA helicase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 748

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAA 74
             G+GKTH LV+ + +LL   A P+      +L  T +  A
Sbjct: 259 PPGTGKTHTLVELIFQLLSRPAAPNTTLPPRILITTPSNLA 299


>gi|312794700|ref|YP_004027623.1| hypothetical protein Calkr_2586 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181840|gb|ADQ42010.1| hypothetical protein Calkr_2586 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 844

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
            +E+SE  D +     +Q    +   +  +  +AGSGKT IL+ ++  +   N     ++
Sbjct: 142 VEENSE--DYLYYLSEQQFRCLESENTTIIKGSAGSGKTSILLHKLGSMQGENV---RIV 196

Query: 67  CLTHT 71
             T+T
Sbjct: 197 YFTYT 201


>gi|299741090|ref|XP_001834211.2| hypothetical protein CC1G_09711 [Coprinopsis cinerea okayama7#130]
 gi|298404551|gb|EAU87614.2| hypothetical protein CC1G_09711 [Coprinopsis cinerea okayama7#130]
          Length = 720

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAA 75
           ++ ++   + +    R + V    G+GKT  +++  L+LL  +   P  +L  T+T  A 
Sbjct: 149 LNSSQIRAMASMIGNRLSLVQGPPGTGKTKTIIE-TLKLLKLHFQVPHPILVCTYTNVAV 207

Query: 76  AEMSH 80
             +  
Sbjct: 208 DNLVE 212


>gi|194883214|ref|XP_001975698.1| GG22453 [Drosophila erecta]
 gi|190658885|gb|EDV56098.1| GG22453 [Drosophila erecta]
          Length = 1295

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
              V    G+GKT  +V+ + +L +     + +L +  +  A  E++ R+L  I      
Sbjct: 639 PYIVFGPPGTGKTETIVEAIYQLYVNRPE-THILVMAGSNTACDEVALRLLRAIAKAPDS 697

Query: 93  SDEILSAEITKIQGKKPNKSD 113
               L+        ++ +  D
Sbjct: 698 HPRPLARIFAASCDRRIDNID 718


>gi|14042214|dbj|BAB55154.1| unnamed protein product [Homo sapiens]
          Length = 779

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T    
Sbjct: 175 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTF-NK 228

Query: 74  AAAEMSHRVL 83
           + A+ + RV 
Sbjct: 229 SIAKQAERVF 238


>gi|255036839|ref|YP_003087460.1| type III restriction protein res subunit [Dyadobacter fermentans
           DSM 18053]
 gi|254949595|gb|ACT94295.1| type III restriction protein res subunit [Dyadobacter fermentans
           DSM 18053]
          Length = 636

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 6   SFQEHSETIDLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           SF +    I L     S+Q            A V    G+GKT  LVQ +  L+  +  P
Sbjct: 166 SFDKDIYPITLPKLNPSQQRAVQNILSAQELAIVHGPPGTGKTTTLVQAIKALVKKDNRP 225

Query: 63  STLLCLTHTKAAAAEMSHRVLE 84
             +L +  +  A   +S ++ E
Sbjct: 226 --ILVVAPSNTAVDLLSEKLSE 245


>gi|198454599|ref|XP_001359640.2| GA16214 [Drosophila pseudoobscura pseudoobscura]
 gi|198132868|gb|EAL28790.2| GA16214 [Drosophila pseudoobscura pseudoobscura]
          Length = 1499

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 88/235 (37%), Gaps = 25/235 (10%)

Query: 18   SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 817  TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNQPNQRTLIVTHSNQALNQ 875

Query: 78   MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +  +++ +     HL      +E L  E    +  + N   ++K   LL  +      L 
Sbjct: 876  LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLNQVQRLQEALG 934

Query: 133  VQ-----TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187
            V      T    CE     +    N+ + +    ++Q +   EEA    L ++  + +  
Sbjct: 935  VSGDNAYT----CET--AGYFYLYNVMARWE-KFQDQIRIHQEEADLDKLRALF-EKDFP 986

Query: 188  LKKAFYEILE-ISNDEDIETLISDIISN----RTALKLIFFFFSYLWRRKIIEKS 237
              K F +  + +      E L++   SN          +  F ++   R  +++S
Sbjct: 987  FGKFFADAPQPLFKGSTYEDLLATAESNFRYISDIFTELEEFRAFELLRTGLDRS 1041


>gi|312132474|ref|YP_003999813.1| superfamily i DNA and RNA helicase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|311773401|gb|ADQ02889.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 759

 Score = 38.7 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|299536409|ref|ZP_07049721.1| ATP-dependent DNA helicase [Lysinibacillus fusiformis ZC1]
 gi|298727893|gb|EFI68456.1| ATP-dependent DNA helicase [Lysinibacillus fusiformis ZC1]
          Length = 598

 Score = 38.7 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 75/241 (31%), Gaps = 59/241 (24%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           N  QE    +D     + E+   +       V+   GSGKT +L+ R + LL  N     
Sbjct: 197 NYTQELITALD----AEQERFAKNISYGHYMVTGVPGSGKTVMLLARAIHLLRENPD-WN 251

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +  LT+ ++ A ++  +V  +    S L   + + E                        
Sbjct: 252 IRILTYNRSLATKLEQKVKSLAENLSFLDIHVENME------------------------ 287

Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK-------KLIEEAKKSTL 177
                   + T H F   +               ++ +EQ K        L  E  K   
Sbjct: 288 --------ISTFHKFALDVAH--------VPIPKLSGDEQQKWWDYDLPSLSLEKAKPKY 331

Query: 178 ASIMLDNNEELKKAFYEIL-------EISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230
            +I++D  ++    +  +        +  + +  E    ++      L+ ++      W 
Sbjct: 332 DAILIDEYQDFLDDWIRLAVQSCKPFKTFDSKKEEKNSINLFLAGDRLQSLYRSTDTPWT 391

Query: 231 R 231
            
Sbjct: 392 E 392


>gi|56708869|ref|YP_164912.1| hypothetical protein SPOA0081 [Ruegeria pomeroyi DSS-3]
 gi|56680554|gb|AAV97219.1| hypothetical protein SPOA0081 [Ruegeria pomeroyi DSS-3]
          Length = 441

 Score = 38.7 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 39  NAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH----- 91
            AGSGKT  +V    +L+ ++A      +L LT    A      R+   + A +      
Sbjct: 9   PAGSGKTFSMVAHARQLIESDALGEGQRMLALTFMNGA----RRRLTSNLNAEASFRRKF 64

Query: 92  --LSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L+ +  +  + K +  K       +A  L
Sbjct: 65  DCLTFDSFAQSLAKRRSAKLTDEMRQQAEEL 95


>gi|291529785|emb|CBK95371.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 661

 Score = 38.7 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +S+ + + +  +   R+  V A  GSGKT       ++ L        +L LT+ +
Sbjct: 60  LSEEQQQMIALAKEGRNVLVDACIGSGKTTT-----IQTLCNEMTDKQILYLTYNR 110


>gi|331660386|ref|ZP_08361321.1| putative DNA helicase [Escherichia coli TA206]
 gi|331052653|gb|EGI24689.1| putative DNA helicase [Escherichia coli TA206]
          Length = 346

 Score = 38.7 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          + T  +Q + +   +   V A AG+GKT  LV
Sbjct: 32 APTAEQQAVINWQGQRLVVRAFAGTGKTATLV 63


>gi|260907583|ref|ZP_05915905.1| putative DNA helicase [Brevibacterium linens BL2]
          Length = 620

 Score = 38.7 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHR 81
           ++A AG GKT +++ R+  L          +L L+ ++AA   +  R
Sbjct: 25 IITAAAGQGKTEVVIARLDSLREQGLDVMDDVLMLSFSRAAVDTVRKR 72


>gi|259907480|ref|YP_002647836.1| hypothetical protein EpC_08070 [Erwinia pyrifoliae Ep1/96]
 gi|224963102|emb|CAX54586.1| CRISPR-associated helicase Cas3 [Erwinia pyrifoliae Ep1/96]
 gi|283477316|emb|CAY73232.1| CRISPR-associated helicase Cas3 [Erwinia pyrifoliae DSM 12163]
          Length = 877

 Score = 38.7 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 35  WVSANAGSGKT-HILVQRVLRLLLANAHPSTLLCLTH---TKAAAAEMSHRVLEIITAWS 90
            + A  GSGKT   L       LLA     +++       T+A A  M  R+  + T   
Sbjct: 305 LIEAPTGSGKTEAALA--YAWRLLAGGQADSII---FALPTQATANAMYSRLERLATQLF 359

Query: 91  HLSDEILSA 99
              + IL+ 
Sbjct: 360 ERPNFILAH 368


>gi|23335463|ref|ZP_00120699.1| COG3973: Superfamily I DNA and RNA helicases [Bifidobacterium
           longum DJO10A]
 gi|23465875|ref|NP_696478.1| hypothetical protein BL1314 [Bifidobacterium longum NCC2705]
 gi|189439034|ref|YP_001954115.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|239621156|ref|ZP_04664187.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|322691471|ref|YP_004221041.1| hypothetical protein BLLJ_1282 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326577|gb|AAN25114.1| narrowly conserved hypothetical protein with helicase motifs
           [Bifidobacterium longum NCC2705]
 gi|189427469|gb|ACD97617.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|239515617|gb|EEQ55484.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516659|emb|CBK70275.1| Superfamily I DNA and RNA helicases [Bifidobacterium longum subsp.
           longum F8]
 gi|320456327|dbj|BAJ66949.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 759

 Score = 38.7 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|241763004|ref|ZP_04761066.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241367956|gb|EER62175.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 687

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 41/139 (29%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           VSA  GSGKT ++V ++  L       +  +  L+HT  A  E++HR+            
Sbjct: 44  VSACPGSGKTTLVVAKLAILARKWKSTTRGICVLSHTNVAREEIAHRLGNT--------- 94

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154
                                    +   +L  P    + TIH F    +   P    ++
Sbjct: 95  ------------------------DVGQRLLGYPH--FIDTIHGFVNRFLAT-PWL--LS 125

Query: 155 SHFAI--ADEEQSKKLIEE 171
           + + +   D + + ++   
Sbjct: 126 AGYRVAAIDNDLTTRVRRR 144


>gi|296126918|ref|YP_003634170.1| Superfamily I DNA and RNA helicase-like protein [Brachyspira
          murdochii DSM 12563]
 gi|296018734|gb|ADG71971.1| Superfamily I DNA and RNA helicase-like protein [Brachyspira
          murdochii DSM 12563]
          Length = 540

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLT 69
          + ++     K +    +   +S  + A AG GKT +L+ ++  ++ +    +P  +L LT
Sbjct: 9  KILEKHKDDKEQLDFIASTEQSLTI-APAGYGKTEMLISKLNYIIESKQIKYPKRILVLT 67

Query: 70 HTKAA 74
           +  A
Sbjct: 68 LSNVA 72


>gi|289827696|ref|ZP_06546139.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
          Length = 100

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + T  +  + +       V A AGSGKT  L +R             +L + + +A
Sbjct: 4  TDTPEQAAVIAWKGERLVVCAFAGSGKTTTL-RRYA----EENPTERMLYIAYNRA 54


>gi|197303377|ref|ZP_03168416.1| hypothetical protein RUMLAC_02099 [Ruminococcus lactaris ATCC
           29176]
 gi|197297375|gb|EDY31936.1| hypothetical protein RUMLAC_02099 [Ruminococcus lactaris ATCC
           29176]
          Length = 682

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           Q +   ++ +   R   +   AGSGKT I + R+  LL     N   S +L L
Sbjct: 208 QKEQNAIIRNTRDRILVIQGAAGSGKTSIALHRIAYLLYHERENLKSSNILIL 260


>gi|167767267|ref|ZP_02439320.1| hypothetical protein CLOSS21_01786 [Clostridium sp. SS2/1]
 gi|167711242|gb|EDS21821.1| hypothetical protein CLOSS21_01786 [Clostridium sp. SS2/1]
 gi|291559423|emb|CBL38223.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
          SSC/2]
          Length = 368

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          +  + A AGSGKT  LV+  ++ L       ++L  T+T   A E+  R
Sbjct: 3  NRLIIAAAGSGKTTYLVKHAMQQL------DSVLITTYT--IANELEIR 43


>gi|154504344|ref|ZP_02041082.1| hypothetical protein RUMGNA_01848 [Ruminococcus gnavus ATCC 29149]
 gi|153795273|gb|EDN77693.1| hypothetical protein RUMGNA_01848 [Ruminococcus gnavus ATCC 29149]
          Length = 682

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           K +  +  +      V   A GSGKT + + R+  LL     +   S +L L
Sbjct: 208 KEQNEIIRNTGDKILVIQGAAGSGKTSVALHRIAYLLYHDREHLKSSNILIL 259


>gi|21744229|gb|AAM76173.1| GM03621p [Drosophila melanogaster]
          Length = 1006

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  
Sbjct: 335 FTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALN 393

Query: 77  EMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++  +++ +     HL      +E L  E    +  + N   ++K   LL  + +    L
Sbjct: 394 QLFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLSQVQKLQEAL 452

Query: 132 KVQ 134
            V 
Sbjct: 453 GVS 455


>gi|330444029|ref|YP_004377015.1| exodeoxyribonuclease V subunit beta [Chlamydophila pecorum E58]
 gi|328807139|gb|AEB41312.1| exodeoxyribonuclease V, beta subunit [Chlamydophila pecorum E58]
          Length = 936

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF------AIADEEQSKKLIEEAKK 174
           +   + T   + + TIH FC  ++QQ+     +           +        L ++  K
Sbjct: 3   IRNAMATVDQMSIFTIHGFCNFVLQQYFPGVQLRPQHPALTHTQVISRHIQDYLSQDLWK 62

Query: 175 STLA 178
             ++
Sbjct: 63  QVMS 66


>gi|320582034|gb|EFW96253.1| ATP-dependent RNA helicase, putative [Pichia angusta DL-1]
          Length = 832

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
              S   + +++++S  L ++   +   +    GSGKT  + + +L+LL    H   +L 
Sbjct: 359 NRISSLKNTLNESQSVALQSALNNQITILKGPPGSGKTSTIYEMILQLL-DQLHYHPILV 417

Query: 68  LTHTKAAA---AE--MSH------RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           +  +  A    AE  M        RVL +     +  D  L+      + +    S   +
Sbjct: 418 VAASNIAVDNIAEKMMKDHKDDIIRVLSMAKESEYNKDHPLADICLHHKIRDRLPSHAQE 477

Query: 117 ARHLLIT 123
               L T
Sbjct: 478 TLRNLAT 484


>gi|322689516|ref|YP_004209250.1| hypothetical protein BLIF_1333 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460852|dbj|BAJ71472.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 759

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|305675950|ref|YP_003867622.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|305414194|gb|ADM39313.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 774

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           S Q  ++  +++S  + EQ       +S    V   AGSGKT   +QRV  LL
Sbjct: 199 SHQSDTQMKNIVSTIQKEQNQIIRNEKSKFLIVQGAAGSGKTSAALQRVAYLL 251


>gi|296331172|ref|ZP_06873645.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|296151623|gb|EFG92499.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. spizizenii ATCC
           6633]
          Length = 773

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           S Q  ++  +++S  + EQ       +S    V   AGSGKT   +QRV  LL
Sbjct: 199 SHQSDTQMKNIVSTIQKEQNQIIRNEKSKFLIVQGAAGSGKTSAALQRVAYLL 251


>gi|163738956|ref|ZP_02146369.1| ATPase [Phaeobacter gallaeciensis BS107]
 gi|161387761|gb|EDQ12117.1| ATPase [Phaeobacter gallaeciensis BS107]
          Length = 512

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 42/166 (25%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP--------------STLLCLTHTKAAAAEMSHR---- 81
           AGSGKT +L +    L  A                   TL  L  T  AA+ +  R    
Sbjct: 51  AGSGKTLLLAELYKALEKAGVEVVSGDYESRKKNEDRRTLAILAPTNKAASVLRLRGVPA 110

Query: 82  --VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQ 134
             +  I+    +  +    AE     G +P      +  +++A+         PG L   
Sbjct: 111 TTIHRILYTPVYDPEYERIAEWLAGSGDEPEIEGVTEEALARAKAFYERNKSIPGALA-- 168

Query: 135 TIHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                   +           ++ PL+       ++ D+ Q + L E
Sbjct: 169 -----AAGLRGSDFITGWKRREEPLDIGFIDEASMLDDRQFQDLKE 209


>gi|312883583|ref|ZP_07743308.1| ATP-dependent RNA helicase HrpA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368806|gb|EFP96333.1| ATP-dependent RNA helicase HrpA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 1278

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 89/259 (34%), Gaps = 56/259 (21%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------L 56
           + N   ++ + +  +SQ K++   A +  +   V+   GSGKT  L +    L      L
Sbjct: 47  HANVKIDYPDIL-PVSQKKADIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGL 105

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + +  P  L   +     A EM   +  ++      +D+I  +   K+       +++  
Sbjct: 106 IGHTQPRRLAARSVANRIAEEMETPLGSVVGYKVRFNDQISDSTKIKLMTDGILLAEIQH 165

Query: 117 ARHL------------------------LITILETPGGLKV----QTI------HAFCEA 142
            R+L                        L  +L     LK+     TI        F +A
Sbjct: 166 DRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPKRPDLKIIITSATIDPERFSDHFNQA 225

Query: 143 -IM----QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
            I+    + +P+E        ++DE +         K  L  I    +E   +   +IL 
Sbjct: 226 PIIEVSGRTYPVETRYRP---LSDETEGD-------KDQLDGIFEAVDELCDEGLGDILI 275

Query: 198 ISNDEDIETLISDIISNRT 216
             N E      +D +S R 
Sbjct: 276 FMNGEREIRDTADALSKRN 294


>gi|326789516|ref|YP_004307337.1| viral RNA helicase 1 [Clostridium lentocellum DSM 5427]
 gi|326540280|gb|ADZ82139.1| viral RNA helicase 1 [Clostridium lentocellum DSM 5427]
          Length = 692

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-- 61
           S    +   ++++  + EQ  ++ +D  R   V   AGSGKT I + R+  LL  N H  
Sbjct: 190 SHNADNRMKNIVATIQKEQNTIVRNDKARIMIVQGIAGSGKTSIALHRIAYLLYQNRHEI 249

Query: 62  -PSTLLCL 68
             + +L +
Sbjct: 250 NANDILII 257


>gi|259502616|ref|ZP_05745518.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169431|gb|EEW53926.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 1005

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 42/209 (20%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCL 68
           +D+I +T ++ L  +  +++  +  +AGSGKT+    L  R+  L   +       ++ +
Sbjct: 291 LDVIRKTLAD-LKINKTSQNYLIQHSAGSGKTNSIAWLAHRLASLHDNDNQIIFDNVIIM 349

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           T           RV+        +      A + ++   +    D+  A       LE+ 
Sbjct: 350 T----------DRVVVDRQLQKAIMGIEHKAGLIRVMDDRCTSEDLKLA-------LESN 392

Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK--LIEEAKKSTLASIMLDNNE 186
             + V TI        Q+FP   ++     I D+  S    L ++     +         
Sbjct: 393 TKIVVTTI--------QKFPYVVDL-----IKDDSNSSDVALKDKKFAVIIDEAHSSTAG 439

Query: 187 ELKKAFYEILEISN---DEDI-ETLISDI 211
           +   A  E L  S+   ++D+ + L+ +I
Sbjct: 440 KDMMAVTEALSSSDKFYEQDVQDQLVQEI 468


>gi|77464539|ref|YP_354043.1| ATPase [Rhodobacter sphaeroides 2.4.1]
 gi|77388957|gb|ABA80142.1| ATPase [Rhodobacter sphaeroides 2.4.1]
          Length = 566

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L      L+ A                  TL  L  T  AA+ +  R     
Sbjct: 108 AGSGKTMLLASLTKALIEAGLEVVSGDWEGRKRKERRTLAILAPTNKAASVLRLRGVPAT 167

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+ +  +       AE     GK+P      +  + +A+     +   PG L    
Sbjct: 168 TIHRILYSPVYDPQYERIAEWLAGNGKRPEVEGLSEMALDRAKAFYEQVPSIPGALA--- 224

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           +  PL+       ++ DE Q   L E
Sbjct: 225 ----AAGLRGSDFIKGWKRRDEPLDVGFVDEASMLDERQFDDLRE 265


>gi|324508684|gb|ADY43663.1| DNA-binding protein SMUBP-2 [Ascaris suum]
          Length = 680

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           I  ++  +   + A+ + +R    +    G+GKT ++++ +L+ +        +L    +
Sbjct: 228 IQKLNDDQQRAVAAALNRSRPIVTIQGPPGTGKTAVVIEIILQAIRTK---QKVLVCAPS 284

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A   +  R+     A     D  +S E  +   +  + SD+ +    L   +   G  
Sbjct: 285 NLAIENIIGRIRGETEASRMSLDPSISME--EDLKQHNSYSDLLRLYEQLNESIRLTGDS 342

Query: 132 KVQ 134
            + 
Sbjct: 343 SIT 345


>gi|300854617|ref|YP_003779601.1| putative helicase [Clostridium ljungdahlii DSM 13528]
 gi|300434732|gb|ADK14499.1| predicted helicase [Clostridium ljungdahlii DSM 13528]
          Length = 744

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           S    S+  ++++  + EQ  ++ ++  ++  V   AGSGKT I + R+  +L  +  
Sbjct: 194 SKSTDSKMKNIVTTIQREQNKIIRNEDYKNLIVQGPAGSGKTSIALHRIAYILYKHRD 251


>gi|269219157|ref|ZP_06163011.1| ATP-binding protein [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211304|gb|EEZ77644.1| ATP-binding protein [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 1011

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++ + + +  +   R + +    G+GKT  ++  V  LL  +   + +  ++ + AA   
Sbjct: 187 NEDQRDAVAKALRNRISVIDGPPGTGKTETILNIVANLLQHSKLTAGI--VSFSNAAVDN 244

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           +  ++ E    ++             ++G++     ++  + 
Sbjct: 245 VRDKLDEAGLGFAAARLGNKRMVAEFLRGQESRMRALANWKA 286


>gi|290959476|ref|YP_003490658.1| ATP/GTP binding protein [Streptomyces scabiei 87.22]
 gi|260649002|emb|CBG72116.1| putative ATP/GTP binding protein [Streptomyces scabiei 87.22]
          Length = 686

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  ++ SD   S  V    G+GKT + + RV  LL
Sbjct: 184 DIVATIQPEQDEIVRSDLAGSLCVQGGPGTGKTAVGLHRVAYLL 227


>gi|227547546|ref|ZP_03977595.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227211956|gb|EEI79852.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 759

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|225432728|ref|XP_002282919.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297737082|emb|CBI26283.3| unnamed protein product [Vitis vinifera]
          Length = 877

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
             G+GKT  +V+ +L+L L   + + +L    + +AA  +  R+L
Sbjct: 420 PPGTGKTKTMVEAILQLYLTQKN-TRILVCAPSNSAADHLLERLL 463


>gi|11068110|ref|NP_068326.1| PxORF107 peptide [Plutella xylostella granulovirus]
 gi|11036902|gb|AAG27405.1|AF270937_107 PxORF107 peptide [Plutella xylostella granulovirus]
          Length = 436

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 14 IDLISQTKSEQLLA------SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
          +++      +Q          D     +VS +AG+GK+ +LV       + N        
Sbjct: 18 LEVPLTLNEQQQKIYNYLTSVDCFEPIFVSGSAGTGKSALLVTLTKAWTMKNMRVD---V 74

Query: 68 LTHTKAAAA 76
           T+T  AA 
Sbjct: 75 GTYTNLAAR 83


>gi|257868643|ref|ZP_05648296.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257802807|gb|EEV31629.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 392

 Score = 38.7 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  D+ +  + EQ        S    V+  AGSGKT +++QRV  LL
Sbjct: 201 KMRDITTSIQREQNAVIRDQSSQTLLVNGVAGSGKTSVIMQRVAYLL 247


>gi|322368849|ref|ZP_08043416.1| ATP-dependent DNA helicase Dna2 [Haladaptatus paucihalophilus
           DX253]
 gi|320551580|gb|EFW93227.1| ATP-dependent DNA helicase Dna2 [Haladaptatus paucihalophilus
           DX253]
          Length = 900

 Score = 38.7 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 13/175 (7%)

Query: 7   FQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           F+    T    +  ++  + LA +    A +    G+GKT+ +  R +R L  + +   +
Sbjct: 499 FEADERTFIGNNDAQNAAVNLAVNAKDCALIHGPPGTGKTYTIA-RTIRALADDGN--RV 555

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L    T  A        LE +       +EI+         +      + +       + 
Sbjct: 556 LLSAFTNRAVDN----ALEALREQGFGEEEIVRVGTESGVREDMQDVRLERGGDPGERVA 611

Query: 126 ETPGGLKV--QTIHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177
           E  G   V   T  A C   IM++   +  +    +   E  +   I  A++  L
Sbjct: 612 ELEGASVVAATT--ATCGSRIMREQAFDVALVDEASQLTEPATLAAINLAERFVL 664


>gi|260431506|ref|ZP_05785477.1| ATPase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415334|gb|EEX08593.1| ATPase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 510

 Score = 38.7 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 13/105 (12%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHRVLEII 86
           AGSGKT +L +    L                     +L  L  T  AA+ +  R +   
Sbjct: 53  AGSGKTLLLAELYKALAETGVQIVSGDYESRKSKDKRSLAILAPTNKAASVLRLRGVPAT 112

Query: 87  TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           T    L   +   E  +I        D  +   L    L+     
Sbjct: 113 TIHRILYTPVYDPEYERIAEWLAGNDDRPEVEGLTDEALDRAAAF 157


>gi|255349039|ref|ZP_05381046.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 70]
 gi|255503577|ref|ZP_05381967.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 70s]
 gi|255507257|ref|ZP_05382896.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis D(s)2923]
 gi|289525695|emb|CBJ15176.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis Sweden2]
 gi|296435264|gb|ADH17442.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis E/150]
 gi|296438983|gb|ADH21136.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis E/11023]
          Length = 496

 Score = 38.7 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E I L+S+ +++ L     +  + V    G+GKT  L  +++RL+LA    + ++  + T
Sbjct: 132 EEIALLSEEQNQVLKTVLNSCFSLVCGGPGTGKTF-LAVQMIRLILAQIPSAQIVVASPT 190

Query: 72  KAAAA 76
             A+A
Sbjct: 191 GKASA 195


>gi|73542332|ref|YP_296852.1| type II secretion system protein E [Ralstonia eutropha JMP134]
 gi|72119745|gb|AAZ62008.1| type II secretion system protein E [Ralstonia eutropha JMP134]
          Length = 459

 Score = 38.7 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 17/142 (11%)

Query: 8   QEHSETIDLISQTK--SEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
            + S+ ++L S T   ++ L A    + +  VS   GSGKT +L       +L+   P  
Sbjct: 204 LQVSDLVELRSLTPPMAQMLQALSKAKVNVLVSGGTGSGKTTLL------NILSGFIPED 257

Query: 65  LLCLTHTKAAAAEMSH----RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH- 119
              +T   AA  ++      R+           +    A +      +P++  + + R  
Sbjct: 258 ERVITIEDAAELQLRQPHVLRLETRPPNIEGKGEITQRALVRNALRMRPDRIILGEVRGG 317

Query: 120 ---LLITILETPGGLKVQTIHA 138
               ++  + T     + TIHA
Sbjct: 318 EALDMLNAMNTGHEGSLTTIHA 339


>gi|145219720|ref|YP_001130429.1| exodeoxyribonuclease V, alpha subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205884|gb|ABP36927.1| exodeoxyribonuclease V, alpha subunit [Chlorobium phaeovibrioides
           DSM 265]
          Length = 570

 Score = 38.7 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKAAAAEM 78
           +   ++A+   +   ++   G+GKT   V R+L +L          +     T  AAA  
Sbjct: 150 QERAVIAALTGKLTIIAGGPGTGKTAT-VGRILSILRQQEGGRKKRIALCAPTGKAAA-- 206

Query: 79  SHRVLEIITAWS 90
             R+   + A S
Sbjct: 207 --RLQSSLKAMS 216


>gi|330943508|gb|EGH45849.1| hypothetical protein PSYPI_27479 [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 121

 Score = 38.7 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|149927742|ref|ZP_01915994.1| DEAD/DEAH box helicase-like protein [Limnobacter sp. MED105]
 gi|149823568|gb|EDM82798.1| DEAD/DEAH box helicase-like protein [Limnobacter sp. MED105]
          Length = 1034

 Score = 38.7 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 41/206 (19%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRL--LLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
             S  +  +AGSGK++    L  R+  L         S+++ +T           R    
Sbjct: 332 GESYLIQHSAGSGKSNTIAWLAHRLASLHDAQDEKVFSSVIVIT----------DR---- 377

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 + D  L   I +   ++     + +    L   L     + + T        +Q
Sbjct: 378 -----RVLDTQLQDTIYQFDHQQGVVEKIDENSQQLADALNNQKLIIITT--------LQ 424

Query: 146 QFPLEA----NI-TSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEI 198
           +FP        +    FA I DE  S +  + A K  L  ++   ++    +A       
Sbjct: 425 KFPWILNKVEGLKDKRFALILDEAHSSQAGKGAIK--LREVLSKGDKTTGGEAIISDENP 482

Query: 199 SNDEDIETLISDIISNRTALKLIFFF 224
             +   E LI+ +I  R     + ++
Sbjct: 483 DEEVTEEDLINKLIEARKRPPNVSYY 508


>gi|53804731|ref|YP_113419.1| CRISPR-associated helicase Cas3 [Methylococcus capsulatus str.
           Bath]
 gi|53758492|gb|AAU92783.1| CRISPR-associated helicase Cas3 [Methylococcus capsulatus str.
           Bath]
          Length = 881

 Score = 38.7 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 25  LLASDPTRSAWVSANA--GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
             A D   S  + A A  GSGKT   + R  RL  A         L  T+ AA E+  RV
Sbjct: 285 QQAPDDAESRLLIAEAETGSGKTEAALARFFRLFAAGKVDGLYFALP-TRVAARELYLRV 343

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           +  +       +   +A +   +  + +   + K   LL
Sbjct: 344 VNYLEQIFPKPECRPAAVLAVPRYARIDNVPIDKLDRLL 382


>gi|227541523|ref|ZP_03971572.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182679|gb|EEI63651.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 754

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D++   + EQ  +  DP+R    V    G+GKT + + RV  LL
Sbjct: 203 DIVETIQREQDTIIRDPSRGVMVVEGGPGTGKTAVALHRVAYLL 246


>gi|89053338|ref|YP_508789.1| ATPase [Jannaschia sp. CCS1]
 gi|88862887|gb|ABD53764.1| ATPase [Jannaschia sp. CCS1]
          Length = 515

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 24/117 (20%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L + V  L                     T+  L  T  AA+ + +R     
Sbjct: 53  AGSGKTLLLAELVKALERTGVEIVSGDWEGKRRKDRRTVAVLAPTNKAASVLRNRGVPAT 112

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLK 132
            +  I+    +  +    AE    QG++P+      + M +A+ +  T    P  L 
Sbjct: 113 TIHRILYTPMYDPEFEKVAEWLAGQGERPSIEALTDAAMDRAKEVYETTKSVPAALA 169


>gi|119717914|ref|YP_924879.1| ATP-dependent helicase HrpA [Nocardioides sp. JS614]
 gi|119538575|gb|ABL83192.1| ATP-dependent helicase HrpA [Nocardioides sp. JS614]
          Length = 1282

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANA 60
            + +   +L    + E + A+       + A   GSGKT  L +  L L      L+ + 
Sbjct: 5   LQIAYPPELPVTQRREDIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGSTGLIGHT 64

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            P  +   +  +  A+E+   + +++      +D        K+       +++ + R L
Sbjct: 65  QPRRIAARSVAERIASELGTELGDLVGYQVRFTDRTSRKSRVKLMTDGILLAELQRDRQL 124


>gi|301605166|ref|XP_002932198.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Xenopus
           (Silurana) tropicalis]
          Length = 785

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L     P+  L LT T+    E++   ++I    
Sbjct: 407 GRDILASADTGSGKTAAFLLPAIIRCLEKKDSPAA-LILTPTR----ELA---VQIEGQA 458

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L   I       + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 459 KELMRGIPHMRTALLVGGMPLPPQIHRLKQGVQVIIATPGRL---------LEIIKQDSV 509

Query: 150 EANITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKA 191
                    I DE  +   +  ++     L  +  D+   L  A
Sbjct: 510 NLG-DLKILIVDEADTMLKMGFQQQVLDILEVVPHDHQTILVSA 552


>gi|291295630|ref|YP_003507028.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290470589|gb|ADD28008.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 662

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            ++++ +     A V+  AG+GKT + + R  R L      + +L  T  K  A ++ 
Sbjct: 228 QQEVVGARFGGPARVTGGAGTGKTVVAIHR-ARTLAQRYPQARILLTTFNKGLARKLK 284


>gi|91205236|ref|YP_537591.1| conjugal transfer protein TraA [Rickettsia bellii RML369-C]
 gi|157827425|ref|YP_001496489.1| conjugal transfer protein TraA [Rickettsia bellii OSU 85-389]
 gi|91068780|gb|ABE04502.1| Conjugal transfer protein TraA [Rickettsia bellii RML369-C]
 gi|157802729|gb|ABV79452.1| Conjugal transfer protein TraA [Rickettsia bellii OSU 85-389]
          Length = 1383

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLL----ASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           I+ N+  +    ID ++     Q           +   +    AG+GK+ +LVQ     +
Sbjct: 326 IHFNNIIKLKSAIDNLASVNEAQRESLQHILINNQGIRILQGRAGTGKSQVLVQ--AYKI 383

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHR 81
             N H   ++ L+ T  AA+E+  +
Sbjct: 384 ATN-HGQNIIGLSPTHKAASELKSK 407


>gi|323706382|ref|ZP_08117946.1| ATP-dependent DNA helicase replicase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534276|gb|EGB24063.1| ATP-dependent DNA helicase replicase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 740

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLL----ANAHPSTLLCL 68
           K +  +  D    A V    AGSGKT I + R+  LL      N     +L +
Sbjct: 210 KEQDKIIRDVDGDALVVQGVAGSGKTSIALHRIAYLLYFERDKNLKKDDILII 262


>gi|258612263|ref|ZP_05711815.1| DNA helicase [Listeria monocytogenes F6900]
 gi|258610289|gb|EEW22897.1| DNA helicase [Listeria monocytogenes F6900]
          Length = 474

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVL 83
             P     + A  G+GKT  L+  ++ ++  +        + C+T+T  A   +  R+ 
Sbjct: 19 IIKPNLEFKIEAGPGAGKTEWLIAHIINVVQNSDILFSTRKVACITYTNTAVETILSRLG 78

Query: 84 EIITAWSHLS 93
            ++    ++
Sbjct: 79 TSLSNRVEVT 88


>gi|254900454|ref|ZP_05260378.1| DNA helicase [Listeria monocytogenes J0161]
          Length = 577

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVL 83
             P     + A  G+GKT  L+  ++ ++  +        + C+T+T  A   +  R+ 
Sbjct: 8  IIKPNLEFKIEAGPGAGKTEWLIAHIINVVQNSDILFSTRKVACITYTNTAVETILSRLG 67

Query: 84 EIITAWSHLS 93
            ++    ++
Sbjct: 68 TSLSNRVEVT 77


>gi|227488126|ref|ZP_03918442.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091988|gb|EEI27300.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 754

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D++   + EQ  +  DP+R    V    G+GKT + + RV  LL
Sbjct: 203 DIVETIQREQDTIIRDPSRGVMVVEGGPGTGKTAVALHRVAYLL 246


>gi|47095888|ref|ZP_00233492.1| DNA helicase II, putative [Listeria monocytogenes str. 1/2a
          F6854]
 gi|293596662|ref|ZP_05263320.2| DNA helicase [Listeria monocytogenes J2818]
 gi|47015765|gb|EAL06694.1| DNA helicase II, putative [Listeria monocytogenes str. 1/2a
          F6854]
 gi|293591309|gb|EFF99643.1| DNA helicase [Listeria monocytogenes J2818]
          Length = 588

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVL 83
             P     + A  G+GKT  L+  ++ ++  +        + C+T+T  A   +  R+ 
Sbjct: 19 IIKPNLEFKIEAGPGAGKTEWLIAHIINVVQNSDILFSTRKVACITYTNTAVETILSRLG 78

Query: 84 EIITAWSHLS 93
            ++    ++
Sbjct: 79 TSLSNRVEVT 88


>gi|228991713|ref|ZP_04151653.1| UvrD/REP helicase [Bacillus pseudomycoides DSM 12442]
 gi|228768036|gb|EEM16659.1| UvrD/REP helicase [Bacillus pseudomycoides DSM 12442]
          Length = 782

 Score = 38.7 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAH 61
           N+     ++I    Q +  Q++ ++ +R   V   AGSGKT   +QRV  LL       H
Sbjct: 200 NNANTQMKSIVSTIQKEQNQIIRNEKSRLLVVQGAAGSGKTSAALQRVAYLLYRYRETLH 259

Query: 62  PSTLLC 67
              ++ 
Sbjct: 260 ADQIVL 265


>gi|297585155|ref|YP_003700935.1| Superfamily I DNA and RNA helicase-like protein [Bacillus
           selenitireducens MLS10]
 gi|297143612|gb|ADI00370.1| Superfamily I DNA and RNA helicase-like protein [Bacillus
           selenitireducens MLS10]
          Length = 758

 Score = 38.7 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLIS--QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHP 62
              +   D++S  Q +  Q++ ++  R   V   AGSGKT I + R+   +     +  P
Sbjct: 185 SADNRLKDIVSTIQAEQNQVIRAEMNRPMIVQGVAGSGKTTIALHRMAYYIYQFAEDFDP 244

Query: 63  STLLCL 68
           S L+ L
Sbjct: 245 SELMIL 250


>gi|294782798|ref|ZP_06748124.1| DNA helicase [Fusobacterium sp. 1_1_41FAA]
 gi|294481439|gb|EFG29214.1| DNA helicase [Fusobacterium sp. 1_1_41FAA]
          Length = 1474

 Score = 38.7 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 9/123 (7%)

Query: 16  LISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              +T +EQ+       S     V    G+GKTH +   +   L        +L  + TK
Sbjct: 341 FTKETNNEQMEIIKSLYSHRAVVVQGPPGTGKTHTIANLLGHFLAEG---KNVLITSQTK 397

Query: 73  AAAAEMSHRV---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A   +  ++   ++ +       D        +   +K    ++   ++  I I     
Sbjct: 398 KALDVLKEKIPTDIQDLCISMLDDDSSDLGTSVESISEKLGYLNLENLKNECIEIENQRN 457

Query: 130 GLK 132
            LK
Sbjct: 458 ELK 460


>gi|213160999|ref|ZP_03346709.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
          Length = 181

 Score = 38.7 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + T  +  + +       V A AGSGKT  L +R             +L + + +A
Sbjct: 4  TDTPEQAAVIAWKGERLVVCAFAGSGKTTTL-RRYA----EENPTERMLYIAYNRA 54


>gi|331084766|ref|ZP_08333854.1| hypothetical protein HMPREF0987_00157 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410860|gb|EGG90282.1| hypothetical protein HMPREF0987_00157 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 702

 Score = 38.7 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           K +  +  +      V   A GSGKT + + R+  LL     +   S +L L
Sbjct: 206 KEQNDIIRNTKDKILVIQGAAGSGKTSVALHRIAYLLYHDREHLKSSNILVL 257


>gi|228997814|ref|ZP_04157418.1| UvrD/REP helicase [Bacillus mycoides Rock3-17]
 gi|229005353|ref|ZP_04163067.1| UvrD/REP helicase [Bacillus mycoides Rock1-4]
 gi|228755883|gb|EEM05214.1| UvrD/REP helicase [Bacillus mycoides Rock1-4]
 gi|228761946|gb|EEM10888.1| UvrD/REP helicase [Bacillus mycoides Rock3-17]
          Length = 782

 Score = 38.7 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAH 61
           N+     ++I    Q +  Q++ ++ +R   V   AGSGKT   +QRV  LL       H
Sbjct: 200 NNANTQMKSIVSTIQKEQNQIIRNEKSRLLVVQGAAGSGKTSAALQRVAYLLYRYRETLH 259

Query: 62  PSTLLC 67
              ++ 
Sbjct: 260 ADQIVL 265


>gi|260574817|ref|ZP_05842819.1| AAA ATPase [Rhodobacter sp. SW2]
 gi|259022822|gb|EEW26116.1| AAA ATPase [Rhodobacter sp. SW2]
          Length = 508

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 24/117 (20%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L      L+ A                  TL  L  T  AA+ +  R     
Sbjct: 52  AGSGKTMLLGSLYKALVAAGVEVVSGDYEGKRRKDRRTLAVLAPTNKAASVLRLRGVPAT 111

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLK 132
            +  I+    +       AE     G +P      +  + +A+     +   PG L 
Sbjct: 112 TIHRILYTPVYDPQYEKIAEWLAGNGPRPAVEGLTELALDRAQAFYAQVASIPGALA 168


>gi|325661638|ref|ZP_08150262.1| hypothetical protein HMPREF0490_00996 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472165|gb|EGC75379.1| hypothetical protein HMPREF0490_00996 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 702

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           K +  +  +      V   A GSGKT + + R+  LL     +   S +L L
Sbjct: 206 KEQNDIIRNTKDKILVIQGAAGSGKTSVALHRIAYLLYHDREHLKSSNILVL 257


>gi|310287091|ref|YP_003938349.1| hypothetical protein with UvrD/REP helicase domain [Bifidobacterium
           bifidum S17]
 gi|311063956|ref|YP_003970681.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
 gi|309251027|gb|ADO52775.1| Conserved hypothetical protein with UvrD/REP helicase domain
           [Bifidobacterium bifidum S17]
 gi|310866275|gb|ADP35644.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 759

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDRIIRSDLNRALVVQGGPGTGKTAVALHRAAYLL 223


>gi|224282631|ref|ZP_03645953.1| Superfamily I DNA and RNA helicase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313139790|ref|ZP_07801983.1| superfamily protein DNA and RNA helicase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132300|gb|EFR49917.1| superfamily protein DNA and RNA helicase [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 759

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     SD  R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDRIIRSDLNRALVVQGGPGTGKTAVALHRAAYLL 223


>gi|255308171|ref|ZP_05352342.1| type III restriction protein, res subunit [Clostridium difficile
           ATCC 43255]
          Length = 993

 Score = 38.7 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 43/207 (20%)

Query: 31  TRSAWVSANAGSGKTHIL---VQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEI 85
            ++  +  +AGSGKT+ +     R+  L   + +    +++ +T           R    
Sbjct: 289 GKNYLIQHSAGSGKTNTIAWTAHRLSSLHDEDNNAIFDSVIVVT----------DR---- 334

Query: 86  ITAWSHLSDEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
                 + D+ L   I +++ K     K D  K    L   +     + + TI  F    
Sbjct: 335 -----KVLDKQLQDAIYQLEHKNGLVVKIDDDKNSSDLADAIVNRAKIIITTIQKF---- 385

Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL------KKAFYEILE 197
             Q+ L           ++ +   +I+EA  ST    M    E L      +    +   
Sbjct: 386 --QYAL-----PKIEQLEKRRYAVIIDEAHSSTSGENMNALKETLAGKTLEEAKIIDAEN 438

Query: 198 ISNDEDIETLISDIISNRTALKLIFFF 224
             N++     ++D+I  RT L  I FF
Sbjct: 439 EKNEKSSIDKMNDLIEKRTNLDHISFF 465


>gi|195441975|ref|XP_002068736.1| GK17867 [Drosophila willistoni]
 gi|194164821|gb|EDW79722.1| GK17867 [Drosophila willistoni]
          Length = 784

 Score = 38.7 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 16  LISQT---KSEQLLASDP-------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-T 64
           LI++T     EQL A               V    G+GKT  +V+ +L+L L  A PS  
Sbjct: 293 LINETIASNPEQLQAIGRILAGPSLKAPFIVFGPPGTGKTTTIVEAILQLRL--AQPSCK 350

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
           +L    + +A   ++ R+ E   +   L + ++  
Sbjct: 351 ILVTAGSNSACDTIAQRLCEYFESNDRLKEYLIPE 385


>gi|320160806|ref|YP_004174030.1| hypothetical protein ANT_14020 [Anaerolinea thermophila UNI-1]
 gi|319994659|dbj|BAJ63430.1| hypothetical protein ANT_14020 [Anaerolinea thermophila UNI-1]
          Length = 688

 Score = 38.7 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 58/143 (40%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
           AGSGKT +L+QR   L  +  +P   +  +T  K            ++  W     E   
Sbjct: 274 AGSGKTLVLIQRARYL--SKIYPDWKIAVVTFNK------------LLQQWLESELESTE 319

Query: 99  AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA 158
                                           +KV+T H  C +++ +            
Sbjct: 320 --------------------------------VKVRTFHGMCLSVLPKN----------- 336

Query: 159 IADEEQSKKLIEEAKKSTLASIM 181
           + +E+  K+++ +    ++    
Sbjct: 337 LQEEDDQKEMLLDRWLDSVEQTY 359


>gi|258592786|emb|CBE69095.1| UvrD/REP helicase [NC10 bacterium 'Dutch sediment']
          Length = 690

 Score = 38.7 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 5   NSFQEHSETIDLI--SQT-----KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL 57
           N+ +E    +D      T        Q +  D    A VS +AG+GKT + + R + L  
Sbjct: 212 NNIEELQRALDYPWDKWTVFLHPAQRQWVERDYNGPARVSGSAGTGKTIVALHRAVFLTR 271

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKI 104
           AN   + +L  T +   A  +  ++  +++    L++ +    I  I
Sbjct: 272 ANPD-ARVLLTTFSDILANALRIQLRRLVSNEPRLAERLEVHSIDAI 317


>gi|293402085|ref|ZP_06646224.1| hypothetical protein HMPREF0863_02365 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304477|gb|EFE45727.1| hypothetical protein HMPREF0863_02365 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 676

 Score = 38.7 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 49/215 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75
           +   + +  L +       V   +GSGKT + + R+  LL +  A    +L + + K  A
Sbjct: 12  LKLDEQQVALLTLQQHPMLVKGKSGSGKTFLFLSRIAYLLKSEMAQKEEMLNIVYDKRMA 71

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            EM                                     + R       E P  + +  
Sbjct: 72  KEM-----------------------------------TKQYRFYFGDDGEIPSFVDIY- 95

Query: 136 IHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
             +F  A++++        +   +          +I    K   A  +    E+  +   
Sbjct: 96  --SFAYALIRRHCEATGRLLPKAYR-----DMSSVIRRLCKDMFAITLT--KEQCSEVMG 146

Query: 194 EILEISNDEDIETLISD-IISNRTALKLIFFFFSY 227
           +I E  N    E  I++ +I++R  L  +  +  Y
Sbjct: 147 KISECRNLMMPEKQIAEIMIADRKNLDFLALYKEY 181


>gi|229541968|ref|ZP_04431028.1| UvrD/REP helicase [Bacillus coagulans 36D1]
 gi|229326388|gb|EEN92063.1| UvrD/REP helicase [Bacillus coagulans 36D1]
          Length = 763

 Score = 38.7 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D + +   V   AGSGKT + +QR+  LL
Sbjct: 211 KEQNRIIRDVSSNLLFVQGAAGSGKTSVALQRIAYLL 247


>gi|116334333|ref|YP_795860.1| superfamily I DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099680|gb|ABJ64829.1| Superfamily I DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 764

 Score = 38.7 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 2   IYHNSFQEHSETI--DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  ++  EHS+T    +++  + EQ      T+S   +V   AGSGKT  ++QRV  LL
Sbjct: 190 MLLSALSEHSDTKMKSIVTTIQKEQNQIIRDTKSDLLFVQGAAGSGKTAAILQRVAFLL 248


>gi|21430330|gb|AAM50843.1| LP02069p [Drosophila melanogaster]
          Length = 872

 Score = 38.7 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  
Sbjct: 201 FTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALN 259

Query: 77  EMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++  +++ +     HL      +E L  E    +  + N   ++K   LL  + +    L
Sbjct: 260 QLFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLSQVQKLQEAL 318

Query: 132 KVQ 134
            V 
Sbjct: 319 GVS 321


>gi|302681597|ref|XP_003030480.1| hypothetical protein SCHCODRAFT_235901 [Schizophyllum commune H4-8]
 gi|300104171|gb|EFI95577.1| hypothetical protein SCHCODRAFT_235901 [Schizophyllum commune H4-8]
          Length = 2029

 Score = 38.7 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +  ++++ ++ +     A V    G+GK+   V+ +  LL A A P  +L +  T  A
Sbjct: 650 LDPSQADAVVDTLTREVALVQGPPGTGKSFTGVELLRVLLAAQAKP--ILLIAFTNHA 705


>gi|148358308|ref|YP_001249515.1| hypothetical protein LPC_0170 [Legionella pneumophila str. Corby]
 gi|296105658|ref|YP_003617358.1| hypothetical protein lpa_00224 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280081|gb|ABQ54169.1| LvhB11 [Legionella pneumophila str. Corby]
 gi|295647559|gb|ADG23406.1| hypothetical protein lpa_00224 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 321

 Score = 38.7 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           +Q +A+   R+  V    GSGKT  LV  ++  ++ +A    +  +
Sbjct: 143 QQAVANH--RNILVIGGTGSGKT-TLVNAIIDEMVKSAPEERIFII 185


>gi|311893451|dbj|BAJ25859.1| putative helicase [Kitasatospora setae KM-6054]
 gi|311901011|dbj|BAJ33419.1| putative helicase [Kitasatospora setae KM-6054]
          Length = 803

 Score = 38.7 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 10/120 (8%)

Query: 19  QTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            T  +Q             + A AG+GKT  LV      L+  + P   L +   K+ A 
Sbjct: 2   PTAEQQAAREMFAAGGDLALVAGAGTGKTSTLV------LMGQSTPRRGLYVAFNKSIAD 55

Query: 77  EMSHRVLEII--TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           +   R    +       L+ + +     +   +         AR L I         ++ 
Sbjct: 56  DAKSRFGSNVECRTAHSLAFQSVGRNYRERISRSARVPAWQTARRLGIDRDLPVNSTRIT 115


>gi|317131933|ref|YP_004091247.1| DNA helicase [Ethanoligenens harbinense YUAN-3]
 gi|315469912|gb|ADU26516.1| DNA helicase [Ethanoligenens harbinense YUAN-3]
          Length = 919

 Score = 38.7 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 5/137 (3%)

Query: 2   IYHNSFQEHSETIDLISQTKSE--QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           ++H      S  I       S+   + A+   + + +    G+GKT  ++  +  LL AN
Sbjct: 166 VHHTQAYPKSNLIFPFGGNASQFKAVEAALENQISMIQGPPGTGKTQTILNIIANLLAAN 225

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
                +L +++  +A A +  ++     A   L   + ++   +        +    +  
Sbjct: 226 ---KRVLVVSNNNSATANVLEKLTSPKYAMDFLVAPLGNSANKRAFVANQTGNYPDLSGW 282

Query: 120 LLITILETPGGLKVQTI 136
            +    +T    ++QT+
Sbjct: 283 AMDAQRQTESRNRIQTL 299


>gi|213972013|ref|ZP_03400109.1| hypothetical protein PSPTOT1_4076 [Pseudomonas syringae pv.
          tomato T1]
 gi|213923229|gb|EEB56828.1| hypothetical protein PSPTOT1_4076 [Pseudomonas syringae pv.
          tomato T1]
          Length = 487

 Score = 38.7 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +       +R   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSLSRKLLVQAFAGTGKTTTLV 33


>gi|253580243|ref|ZP_04857509.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848336|gb|EES76300.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 685

 Score = 38.7 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           Q +   ++ +   R   +   AGSGKT + + R+  LL     N   S +L L
Sbjct: 203 QKEQNAIIRNTKDRIMVIQGAAGSGKTSVALHRIAYLLYHDRQNLKSSNILIL 255


>gi|317122649|ref|YP_004102652.1| DNA topoisomerase I [Thermaerobacter marianensis DSM 12885]
 gi|315592629|gb|ADU51925.1| DNA topoisomerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1062

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 20  TKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
              EQ +A          ++    G+GKT  L   +  L+        LL  +HT AA
Sbjct: 181 LNEEQQVAVHRAMDRPVTFIWGPPGTGKTRTLAALIQALMEREG---RLLVTSHTNAA 235


>gi|168206717|ref|ZP_02632722.1| putative helicase [Clostridium perfringens E str. JGS1987]
 gi|168211697|ref|ZP_02637322.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
 gi|170661846|gb|EDT14529.1| putative helicase [Clostridium perfringens E str. JGS1987]
 gi|170710348|gb|EDT22530.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
          Length = 706

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           M+  N+  +  + + +  Q + ++++  + T +  V+  AGSGKT I + RV  LL
Sbjct: 188 MVLSNNSSDKLKDVIMTIQQEQDEIIRKERTSNIVVNGVAGSGKTTIALHRVAYLL 243


>gi|158298308|ref|XP_318484.4| AGAP004028-PA [Anopheles gambiae str. PEST]
 gi|157014462|gb|EAA13627.4| AGAP004028-PA [Anopheles gambiae str. PEST]
          Length = 1212

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           + E  + +   + T+ E + A        V    G+GKT + VQ ++  L  N      L
Sbjct: 517 YNEPKKNVIRFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNHPQQRTL 575

Query: 67  CLTHTKAAAAEMSHRVLEI 85
            +TH+  A  ++  +++ +
Sbjct: 576 IVTHSNQALNQLFEKIMAL 594


>gi|168217958|ref|ZP_02643583.1| putative helicase [Clostridium perfringens NCTC 8239]
 gi|182380002|gb|EDT77481.1| putative helicase [Clostridium perfringens NCTC 8239]
          Length = 706

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S     +  D+I   + EQ      + T +  V+  AGSGKT I + RV  LL
Sbjct: 191 SNNSSDKLKDVIMTIQQEQDEIIRKERTSNIVVNGVAGSGKTTIALHRVAYLL 243


>gi|110803891|ref|YP_697893.1| helicase [Clostridium perfringens SM101]
 gi|110684392|gb|ABG87762.1| conserved hypothetical protein [Clostridium perfringens SM101]
          Length = 706

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S     +  D+I   + EQ      + T +  V+  AGSGKT I + RV  LL
Sbjct: 191 SNNSSDKLKDVIMTIQQEQDEIIRKERTSNIVVNGVAGSGKTTIALHRVAYLL 243


>gi|325287142|ref|YP_004262932.1| serine/threonine protein kinase [Cellulophaga lytica DSM 7489]
 gi|324322596|gb|ADY30061.1| serine/threonine protein kinase [Cellulophaga lytica DSM 7489]
          Length = 1108

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 36/192 (18%)

Query: 5   NSFQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           N +Q   +  D +     ++ +  A        +    G+GKT ++ + V ++L  N   
Sbjct: 546 NVYQTDEKGNDFVYSFNQQKAILNAIHREPLTIIQGPPGTGKTTVITETVFQILNKNPD- 604

Query: 63  STLLCLTHTKAAAAEMSH----------RVLEIITAWSHLSDEILSAEIT--KIQGKKPN 110
           + +L  + T  A   +            R+  I    + L    L  +I   K + +K  
Sbjct: 605 AKILITSQTNDAVDNVLDNLLEKEIPIVRLSGIRKPKASLQKHTLDRKIEGWKEEVRKKA 664

Query: 111 KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           K++    +      LE    +                     +   F I    +  K+ +
Sbjct: 665 KANWKLYKEQFKRALEKENII---------------------LLPIFEILSSNKQWKVKK 703

Query: 171 EAKKSTLASIML 182
           +  +  L    +
Sbjct: 704 QQIEKMLERFNM 715


>gi|301606550|ref|XP_002932889.1| PREDICTED: intron-binding protein aquarius-like [Xenopus (Silurana)
           tropicalis]
          Length = 1547

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T++E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  ++ 
Sbjct: 774 TQTEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNLYHNFPEQRTLIVTHSNQALNQLF 832

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      + +L+  G L+
Sbjct: 833 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRLELLKEVGRLQ 885


>gi|237709673|ref|ZP_04540154.1| type I restriction-modification system restriction subunit
           [Bacteroides sp. 9_1_42FAA]
 gi|229456309|gb|EEO62030.1| type I restriction-modification system restriction subunit
           [Bacteroides sp. 9_1_42FAA]
          Length = 1343

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 80/198 (40%), Gaps = 39/198 (19%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEI 85
            ++  V  +AGSGKT     L  ++  L  A+  P   +++ +T           R+   
Sbjct: 289 GQTYLVQHSAGSGKTKSMSWLAFQLANLQNADNTPVFDSVIMIT----------DRI--- 335

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQT---IHAFCE 141
                 + D  ++ EI  ++       D+ K +R+L   + E    + + T     +F  
Sbjct: 336 ------VLDRNIADEIKGMEEVAGTVKDIRKGSRNLAKALAEGGHRIIISTEQKF-SFAL 388

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI---LEI 198
             +++        SHFA+  +E      ++A  +    ++ D N EL++   E       
Sbjct: 389 PKLKEAA-----GSHFAVIIDEAHTAFGKQASHNV-RQVLTDKN-ELRETVEEFGIESRE 441

Query: 199 SNDEDIETLISDIISNRT 216
           + +   + +++++ + R+
Sbjct: 442 AENNMQDQMLAELQAARS 459


>gi|148707600|gb|EDL39547.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Mus musculus]
          Length = 619

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 24/185 (12%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R    +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIIRAFSEDKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + R  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
                S   I   +++  +++   +  +  ++     + +     ++  +  + IE L  
Sbjct: 343 SL---SGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTI---LVSATIPDSIEQLTD 396

Query: 210 DIISN 214
            ++ N
Sbjct: 397 QLLHN 401


>gi|110798811|ref|YP_695033.1| putative helicase [Clostridium perfringens ATCC 13124]
 gi|110673458|gb|ABG82445.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124]
          Length = 706

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S     +  D+I   + EQ      + T +  V+  AGSGKT I + RV  LL
Sbjct: 191 SNNSSDKLKDVIMTIQQEQDEIIRKERTSNIVVNGVAGSGKTTIALHRVAYLL 243


>gi|74227490|dbj|BAE21808.1| unnamed protein product [Mus musculus]
          Length = 619

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 24/185 (12%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R    +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIIRAFSEDKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + R  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
                S   I   +++  +++   +  +  ++     + +     ++  +  + IE L  
Sbjct: 343 SL---SGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTI---LVSATIPDSIEQLTD 396

Query: 210 DIISN 214
            ++ N
Sbjct: 397 QLLHN 401


>gi|13385988|ref|NP_080776.1| probable ATP-dependent RNA helicase DDX59 [Mus musculus]
 gi|81917187|sp|Q9DBN9|DDX59_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX59; AltName:
           Full=DEAD box protein 59
 gi|12836314|dbj|BAB23601.1| unnamed protein product [Mus musculus]
 gi|23272229|gb|AAH23840.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Mus musculus]
          Length = 619

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 24/185 (12%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R    +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIIRAFSEDKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + R  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
                S   I   +++  +++   +  +  ++     + +     ++  +  + IE L  
Sbjct: 343 SL---SGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTI---LVSATIPDSIEQLTD 396

Query: 210 DIISN 214
            ++ N
Sbjct: 397 QLLHN 401


>gi|239948043|ref|ZP_04699796.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922319|gb|EER22343.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 1377

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLL----ASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           I+ N+  +    ID ++     Q           +   +    AG+GK+ +L +     +
Sbjct: 326 IHFNNVIKLKSAIDNLASVNEAQRESLQHILINNQGIRILQGRAGTGKSQVLAE--AYKI 383

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHR 81
             N H   ++ L+ T  AA+E+  +
Sbjct: 384 ATN-HGQNIIGLSPTHKAASELKSK 407


>gi|51894105|ref|YP_076796.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
          IAM 14863]
 gi|51857794|dbj|BAD41952.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
          IAM 14863]
          Length = 679

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           ++  A SGKT +L  R  + L        +L LT
Sbjct: 7  LITGPARSGKTTVLRGRFQQWLREGVRTDQILILT 41


>gi|317151632|ref|XP_001824793.2| ATP binding protein [Aspergillus oryzae RIB40]
          Length = 1048

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPST--LLCLTH 70
           +D       EQ+L    T+S  V     G+GKT +     LR+LL+N +P    ++  + 
Sbjct: 303 LDATQWRALEQML----TKSLAVIQGPPGTGKTFV-SVIALRILLSNMNPGDPPIIVASQ 357

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETP 128
           T  A  ++   +      +  L       EI K  +   + N+   +    +L       
Sbjct: 358 TNHAVDQLLRHISRFERDYIRLGGRSSDPEIRKRTLFEVRQNEPSAAIQGGVLGQAQRRY 417

Query: 129 GGLKVQTIHAFCEAIMQQFPLEAN---ITS 155
                 TI      ++Q F  E +   +  
Sbjct: 418 NKYH-HTI----ADLLQNFSAENDDVLLPP 442


>gi|282898173|ref|ZP_06306164.1| UvrD/REP helicase [Raphidiopsis brookii D9]
 gi|281196704|gb|EFA71609.1| UvrD/REP helicase [Raphidiopsis brookii D9]
          Length = 785

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 39/161 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMS 79
           +  +A        VSA  G+GK+  +       +  + +    S L+ +T T++AA  + 
Sbjct: 41  QVQMADWLGGPLAVSAVPGAGKSTGMASAAAIAIARHYYSHSRSQLVLVTFTRSAAMNLK 100

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++ E +   S                                       G  + T+H  
Sbjct: 101 LKICEKLRELSLPQK-----------------------------------GFVIYTLHGL 125

Query: 140 CEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179
              I  ++P  + +      +    +S +LI  A +  ++ 
Sbjct: 126 ALNIATRYPQLSGLELDQVNLITPNRSHRLISMAVEQWISK 166


>gi|195429423|ref|XP_002062762.1| GK19527 [Drosophila willistoni]
 gi|194158847|gb|EDW73748.1| GK19527 [Drosophila willistoni]
          Length = 1369

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 20  TKSEQLLASDP-------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              EQL A          +    +    G+GKT  + + + +L +     + +L L  + 
Sbjct: 631 NNPEQLKAVQHISLCEKFSAPYLIWGPPGTGKTATICEAIYQLYVNRPK-THILVLAGSN 689

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
            A  E++ R+L  I          L+        ++ +  D
Sbjct: 690 TACDEIALRLLRAIAQAPESQPRPLTRIFAASCDRRIDNID 730


>gi|157137176|ref|XP_001663922.1| hypothetical protein AaeL_AAEL013736 [Aedes aegypti]
 gi|108869774|gb|EAT33999.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1159

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  
Sbjct: 499 FTPTQVEAIKAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNHPNQRTLIVTHSNQALN 557

Query: 77  EMSHRVLEI 85
           ++  +++ +
Sbjct: 558 QLFEKIMAL 566


>gi|83773533|dbj|BAE63660.1| unnamed protein product [Aspergillus oryzae]
          Length = 961

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPST--LLCLTH 70
           +D       EQ+L    T+S  V     G+GKT +     LR+LL+N +P    ++  + 
Sbjct: 313 LDATQWRALEQML----TKSLAVIQGPPGTGKTFV-SVIALRILLSNMNPGDPPIIVASQ 367

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETP 128
           T  A  ++   +      +  L       EI K  +   + N+   +    +L       
Sbjct: 368 TNHAVDQLLRHISRFERDYIRLGGRSSDPEIRKRTLFEVRQNEPSAAIQGGVLGQAQRRY 427

Query: 129 GGLKVQTIHAFCEAIMQQFPLEAN---ITS 155
                 TI      ++Q F  E +   +  
Sbjct: 428 NKYH-HTI----ADLLQNFSAENDDVLLPP 452


>gi|323492472|ref|ZP_08097620.1| ATP-dependent RNA helicase HrpA [Vibrio brasiliensis LMG 20546]
 gi|323313259|gb|EGA66375.1| ATP-dependent RNA helicase HrpA [Vibrio brasiliensis LMG 20546]
          Length = 1307

 Score = 38.3 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ K +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 82  EYPEIL-PVSQKKDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQP 140

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R+L
Sbjct: 141 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRYL 198


>gi|310658981|ref|YP_003936702.1| hypothetical protein CLOST_1677 [Clostridium sticklandii DSM 519]
 gi|308825759|emb|CBH21797.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 593

 Score = 38.3 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 32  RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +A     AGSGKT  L+ R+++L          L LT  K
Sbjct: 212 GNALFIGPAGSGKTTTLIARLIKL-SRIYDKDRFLFLTFNK 251


>gi|325274915|ref|ZP_08140922.1| putative DNA helicase [Pseudomonas sp. TJI-51]
 gi|324099953|gb|EGB97792.1| putative DNA helicase [Pseudomonas sp. TJI-51]
          Length = 504

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHIL 48
          +D +  T+ ++      +    + A AG+GKT  L
Sbjct: 1  MDGLQMTEEQRAPCESNSDVIKIEAGAGTGKTTTL 35


>gi|195389338|ref|XP_002053334.1| GJ23825 [Drosophila virilis]
 gi|194151420|gb|EDW66854.1| GJ23825 [Drosophila virilis]
          Length = 1484

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 809 TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALNQ 867

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +++ +     HL      +E L  E    +  + N   ++K   LL  +      L 
Sbjct: 868 LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLSQVQRLQEALG 926

Query: 133 VQ 134
           V 
Sbjct: 927 VS 928


>gi|169342344|ref|ZP_02628918.2| putative helicase [Clostridium perfringens C str. JGS1495]
 gi|169299569|gb|EDS81632.1| putative helicase [Clostridium perfringens C str. JGS1495]
          Length = 706

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S     +  D+I   + EQ      + T +  V+  AGSGKT I + RV  LL
Sbjct: 191 SNNSSDKLKDVIMTIQQEQDEIIRKERTSNIVVNGVAGSGKTTIALHRVAYLL 243


>gi|18309581|ref|NP_561515.1| hypothetical protein CPE0599 [Clostridium perfringens str. 13]
 gi|18144258|dbj|BAB80305.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 706

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S     +  D+I   + EQ      + T +  V+  AGSGKT I + RV  LL
Sbjct: 191 SNNSSDKLKDVIMTIQQEQDEIIRKERTSNIVVNGVAGSGKTTIALHRVAYLL 243


>gi|323450106|gb|EGB05989.1| hypothetical protein AURANDRAFT_65956 [Aureococcus anophagefferens]
          Length = 1048

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 18  SQTKSEQLLASDPTRS-----AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           + T  ++  A++P          V A AG+GK+H  ++ V R       P + + + +  
Sbjct: 401 ALTAEQEAYAAEPLDPANNDVILVKAYAGTGKSHSTLEFVAR----RHGPESPVLVAYFN 456

Query: 73  AA-AAEMSHRVLEIITAWS 90
           AA AAEM  ++   I   +
Sbjct: 457 AAMAAEMRLKLTATIPGGA 475


>gi|307822510|ref|ZP_07652741.1| Ankyrin [Methylobacter tundripaludum SV96]
 gi|307736114|gb|EFO06960.1| Ankyrin [Methylobacter tundripaludum SV96]
          Length = 938

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHI 47
           ++Y N        +D I      Q    D      V  +AGSGKT +
Sbjct: 107 LVYLNPGHNAFNLLDKIISFDDRQQSIYDLQPPLIVIGSAGSGKTAL 153


>gi|195571623|ref|XP_002103802.1| GD18787 [Drosophila simulans]
 gi|194199729|gb|EDX13305.1| GD18787 [Drosophila simulans]
          Length = 1483

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 810 TPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALNQ 868

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +++ +     HL      +E L  E    +  + N   ++K   LL  + +    L 
Sbjct: 869 LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLSQVQKLQEALG 927

Query: 133 VQ 134
           V 
Sbjct: 928 VS 929


>gi|24372372|ref|NP_716414.1| hypothetical protein SO_0783 [Shewanella oneidensis MR-1]
 gi|24346329|gb|AAN53859.1|AE015523_3 hypothetical protein SO_0783 [Shewanella oneidensis MR-1]
          Length = 662

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 27/170 (15%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
           AGSGKT +L+ ++ + L +N   + +      K  A+ M  R+ E               
Sbjct: 192 AGSGKTELLLHKI-KELYSNEQEARIAFTCFNKILASNMKDRIPEFFNFMKVEKQIEWDK 250

Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH--AF---CEAIMQQFPLEANIT 154
           ++             S     +    E P G    T H  +F   C+  ++Q        
Sbjct: 251 KLFCFSSWGNGPKPYSGMYRYICYKYEIPFG----TFHNGSFENLCKEAIKQ-------- 298

Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
               I +  +        KK     I +D +++  ++F  + E+     I
Sbjct: 299 ----ITERTKDGD-----KKYIFDYIFIDESQDFGESFINLCELITKNKI 339


>gi|323701948|ref|ZP_08113617.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533034|gb|EGB22904.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 778

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           +   + + + A+   ++  V+A  G+GKT ++ +R++  ++A
Sbjct: 534 LDDFQEQAVKAALAGKNVLVAAPTGTGKT-VIAERLIEAVMA 574


>gi|281361618|ref|NP_996198.2| CG31368, isoform D [Drosophila melanogaster]
 gi|272476938|gb|AAS65141.2| CG31368, isoform D [Drosophila melanogaster]
          Length = 1486

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 816 TPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALNQ 874

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +++ +     HL      +E L  E    +  + N   ++K   LL  + +    L 
Sbjct: 875 LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLSQVQKLQEALG 933

Query: 133 VQ 134
           V 
Sbjct: 934 VS 935


>gi|198470128|ref|XP_001355233.2| GA16807 [Drosophila pseudoobscura pseudoobscura]
 gi|198145306|gb|EAL32290.2| GA16807 [Drosophila pseudoobscura pseudoobscura]
          Length = 1215

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 9/131 (6%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANA-GSGKTHIL------VQRVLRLLLANAHPSTLL 66
           + L    + +Q++ +       + A A GSGKT  L             ++    P  + 
Sbjct: 269 LRLPILAEEQQVMETINENPIVIIAGATGSGKTTQLPQFLYEAGYAQHKIIGVTEPRRVA 328

Query: 67  CLTHTKAAAAEM--SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            +  +K  A EM  S R +  +  +          +                     + I
Sbjct: 329 AIAMSKRVAHEMNLSEREVSYLIRFEGNVSPATRIKFMTDGVLMKEIESDFLLNKYSVII 388

Query: 125 LETPGGLKVQT 135
           L+      + T
Sbjct: 389 LDEAHERSIYT 399


>gi|195168886|ref|XP_002025261.1| GL13393 [Drosophila persimilis]
 gi|194108717|gb|EDW30760.1| GL13393 [Drosophila persimilis]
          Length = 1199

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 9/131 (6%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANA-GSGKTHIL------VQRVLRLLLANAHPSTLL 66
           + L    + +Q++ +       + A A GSGKT  L             ++    P  + 
Sbjct: 269 LRLPILAEEQQVMETINENPIVIIAGATGSGKTTQLPQFLYEAGYAQHKIIGVTEPRRVA 328

Query: 67  CLTHTKAAAAEM--SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            +  +K  A EM  S R +  +  +          +                     + I
Sbjct: 329 AIAMSKRVAHEMNLSEREVSYLIRFEGNVSPATRIKFMTDGVLMKEIESDFLLNKYSVII 388

Query: 125 LETPGGLKVQT 135
           L+      + T
Sbjct: 389 LDEAHERSIYT 399


>gi|194756624|ref|XP_001960576.1| GF11436 [Drosophila ananassae]
 gi|190621874|gb|EDV37398.1| GF11436 [Drosophila ananassae]
          Length = 818

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 10  HSETIDLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +    D   Q ++ Q + + P+      V    G+GKT  +V+ +L+L L     S +L 
Sbjct: 303 NPSIYDNEEQMQAVQRIVAGPSLQGPYIVFGPPGTGKTTTIVEAILQLRLQQPR-SRILV 361

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
              + +A   ++ ++ E     +HL   + S 
Sbjct: 362 TAGSNSACDTIALKLCEYFDGNAHLLKNLQSE 393


>gi|163914425|ref|NP_001106297.1| DEAD box helicase [Xenopus laevis]
 gi|116045455|gb|ABJ53145.1| DEAD box helicase [Xenopus laevis]
          Length = 254

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L     P+  L LT T+    E++   ++I    
Sbjct: 38  ERDILASADTGSGKTAAFLLPAIIRCLEKKDSPAA-LILTPTR----ELA---VQIEGQA 89

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L   I       + G  P    + + +  +  I+ TPG L           I+ Q  +
Sbjct: 90  KELMRGIPHMRTALLVGGMPLPPQIHRLKQGVQVIIATPGRL---------LEIINQDCV 140

Query: 150 EANITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKA 191
                    I DE  +   +  ++     L     D+   L  A
Sbjct: 141 NLG-DLKILIVDEADTMLKMGFQQQVLDILEHASHDHQTILVSA 183


>gi|168214788|ref|ZP_02640413.1| putative helicase [Clostridium perfringens CPE str. F4969]
 gi|170713770|gb|EDT25952.1| putative helicase [Clostridium perfringens CPE str. F4969]
          Length = 706

 Score = 38.3 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S     +  D+I   + EQ      + T +  V+  AGSGKT I + RV  LL
Sbjct: 191 SNNSSDKLKDVIMTIQQEQDEIIRKERTSNIVVNGVAGSGKTTIALHRVAYLL 243


>gi|166031531|ref|ZP_02234360.1| hypothetical protein DORFOR_01231 [Dorea formicigenerans ATCC
           27755]
 gi|166028508|gb|EDR47265.1| hypothetical protein DORFOR_01231 [Dorea formicigenerans ATCC
           27755]
          Length = 745

 Score = 38.3 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL---LANAH 61
               ++  +++   + EQ      T+     +   AGSGKT + + R+  LL     + +
Sbjct: 194 ANSDTKLKNIVRTIQKEQNAIIRNTKDKILAIQGVAGSGKTSVALHRIAYLLYHDREHLN 253

Query: 62  PSTLLCL 68
            S +L L
Sbjct: 254 SSNILIL 260


>gi|18376100|emb|CAD21162.1| conserved hypothetical protein [Neurospora crassa]
          Length = 776

 Score = 38.3 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            + +K +Q +A    T++  VSA  GSGKT          ++A      +  LT++K   
Sbjct: 52  FTPSKEQQEIAELCGTKNVVVSARPGSGKTAT-----AEAIVAAHPEKRVAVLTYSKRLQ 106

Query: 76  AEMSHRVL 83
            E   R+ 
Sbjct: 107 LETHRRLR 114


>gi|328784311|ref|XP_396990.3| PREDICTED: intron-binding protein aquarius [Apis mellifera]
          Length = 1442

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  +
Sbjct: 793 TPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNFPNQRTLIVTHSNQALNQ 851

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +++ +     HL      +E L  E    +  + N   ++K   LL+ +      L 
Sbjct: 852 LFEKIMALDIDERHLLRLGHGEEALETEKDFSRYGRVN-YVLAKRLDLLMEVQRLQESLN 910

Query: 133 V 133
           V
Sbjct: 911 V 911


>gi|225022080|ref|ZP_03711272.1| hypothetical protein CORMATOL_02113 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945201|gb|EEG26410.1| hypothetical protein CORMATOL_02113 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 382

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           +QL+A+   RS  V    GSGKT +L      LL   +H   ++C+
Sbjct: 185 QQLVAA--RRSFLVIGGTGSGKTTLL----AALLGEVSHRQRIICI 224


>gi|210610099|ref|ZP_03288261.1| hypothetical protein CLONEX_00447 [Clostridium nexile DSM 1787]
 gi|210152611|gb|EEA83617.1| hypothetical protein CLONEX_00447 [Clostridium nexile DSM 1787]
          Length = 679

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           Q +   ++ +   +   +   AGSGKT + + R+  LL     +   S +L L
Sbjct: 205 QKEQNAIIRNTKDKILIIQGAAGSGKTSVALHRIAYLLYHDREHLKSSNILIL 257


>gi|291279138|ref|YP_003495973.1| exodeoxyribonuclease V subunit alpha [Deferribacter desulfuricans
           SSM1]
 gi|290753840|dbj|BAI80217.1| exodeoxyribonuclease V, alpha subunit [Deferribacter desulfuricans
           SSM1]
          Length = 570

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
             +S   G+GKT ++ ++++  +L N     +     T  A +    R+LE +  +  L 
Sbjct: 155 MVISGGPGTGKTTVI-KKIIETILDNNDNHKIAITAPTGKAVS----RILESLKEFPFLD 209

Query: 94  DEILSAEITKIQGKK 108
                  I ++ G  
Sbjct: 210 KIEPPCTIHRLLGAN 224


>gi|300781282|ref|ZP_07091136.1| DNA or RNA helicase [Corynebacterium genitalium ATCC 33030]
 gi|300532989|gb|EFK54050.1| DNA or RNA helicase [Corynebacterium genitalium ATCC 33030]
          Length = 743

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + +Q++         VS   G+GKT + + RV  LL
Sbjct: 203 QREQDQIIRDSTRGVLVVSGGPGTGKTAVALHRVAYLL 240


>gi|225374978|ref|ZP_03752199.1| hypothetical protein ROSEINA2194_00601 [Roseburia inulinivorans DSM
           16841]
 gi|225213168|gb|EEG95522.1| hypothetical protein ROSEINA2194_00601 [Roseburia inulinivorans DSM
           16841]
          Length = 245

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 17  ISQTKSEQ-----LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           I Q   EQ      +  +P R+  ++ +AG+GKT +L   V  +L  
Sbjct: 176 IKQLTPEQGQLITEIIHNPDRNYVINGDAGTGKTVLLTHLVASILKE 222


>gi|183982950|ref|YP_001851241.1| HrpA-like helicase [Mycobacterium marinum M]
 gi|183176276|gb|ACC41386.1| HrpA-like helicase [Mycobacterium marinum M]
          Length = 1313

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL    + +++  +       V A   GSGKT  L      + R +R  + +  P  L  
Sbjct: 71  DLPVSERRQEIAEAIRANQVVVVAGETGSGKTTQLPKICLDIGRGVRGTIGHTQPRRLAA 130

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E+   + + +      +D++    + K+       +++ + R LL 
Sbjct: 131 RTVAQRIADELQTPLGDAVGYAVRFTDQVSERTLVKLMTDGILLAEIQRDRRLLR 185


>gi|281361616|ref|NP_731647.3| CG31368, isoform C [Drosophila melanogaster]
 gi|33589396|gb|AAQ22465.1| RE35509p [Drosophila melanogaster]
 gi|272476937|gb|AAF54713.4| CG31368, isoform C [Drosophila melanogaster]
          Length = 1483

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 816 TPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALNQ 874

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +++ +     HL      +E L  E    +  + N   ++K   LL  + +    L 
Sbjct: 875 LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLSQVQKLQEALG 933

Query: 133 VQ 134
           V 
Sbjct: 934 VS 935


>gi|118380994|ref|XP_001023659.1| hypothetical protein TTHERM_00732610 [Tetrahymena thermophila]
 gi|89305426|gb|EAS03414.1| hypothetical protein TTHERM_00732610 [Tetrahymena thermophila
           SB210]
          Length = 1342

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           S QE  +  +  +Q  +EQ LA +     R   V    GSGKT   V+ VL  L A+  P
Sbjct: 890 SNQEQYKATNTKTQLNAEQQLAVEKAALNRITIVQGPPGSGKTTAAVEIVLEWLRASNQP 949

Query: 63  STLLC 67
             +L 
Sbjct: 950 --ILV 952


>gi|90425030|ref|YP_533400.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90107044|gb|ABD89081.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
          Length = 672

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAE 77
               +L A     SA   A  GSGKT +LV ++  +L          +  L+HT AA  E
Sbjct: 36  NDESRLAAIRNLDSADFEACPGSGKTTLLVAKLA-ILANRWRWRRQGICVLSHTNAARNE 94

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  ++       + L        I     +  +   + +++  LI  ++T   LK
Sbjct: 95  IGTKLSSSPIGGALLRYPHFVGTIHAFVNEFLSVPWL-RSKGNLIKAIDTQIALK 148


>gi|198477467|ref|XP_002136600.1| GA27879 [Drosophila pseudoobscura pseudoobscura]
 gi|198142891|gb|EDY71604.1| GA27879 [Drosophila pseudoobscura pseudoobscura]
          Length = 1017

 Score = 38.3 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
             G+GKT  LV+ VL+++  N     +L  T + +AA  ++ R++      +     I+S
Sbjct: 553 PPGTGKTVTLVEAVLQII-RNLPSCRILVATPSNSAADLITKRIIASKALVAGDFIRIVS 611

Query: 99  AEITKIQGKKPN 110
             + + +   P 
Sbjct: 612 QNVIEKELIPPE 623


>gi|32698647|ref|NP_872562.1| helicase-2 [Adoxophyes orana granulovirus]
 gi|32526802|gb|AAP85745.1| helicase-2 [Adoxophyes orana granulovirus]
          Length = 495

 Score = 38.3 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 19/133 (14%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRL 55
           +  N   + S   + I+    +Q    D   S       +VS  AG+GK+H+L      +
Sbjct: 68  VQLNCVTDES-LRNKINNLNRQQRKLFDYVTSVEKFTPIFVSGYAGTGKSHVLT-----V 121

Query: 56  LLANAHPSTLLCLT--HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
           +         L  T  +T AAA     RV+E  T  S                K P+   
Sbjct: 122 IRDYWKIQNKLVYTTAYTNAAA-----RVVEGKTCHSLFGFSFFGDHDANHTIKLPDCLI 176

Query: 114 MSKARHLLITILE 126
           + +   L   +LE
Sbjct: 177 IDEISMLPKKMLE 189


>gi|301321531|gb|ADK68921.1| superfamily II DNA or RNA helicase [Gordonia sp. KTR9]
          Length = 646

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 8  QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
          Q     + ++S  +   + A+       V A  GSGKT  +     RL       + +L 
Sbjct: 11 QPAPPAVAVLSAEQQAVVDAAAKGHDVIVDAAIGSGKTSTIQDLCARLSAT----TRILY 66

Query: 68 LTHTK--AAAAEMSHRV 82
          LT+++   A A    RV
Sbjct: 67 LTYSRLLKADA--QDRV 81


>gi|305680428|ref|ZP_07403236.1| helicase/secretion neighborhood ATPase [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659959|gb|EFM49458.1| helicase/secretion neighborhood ATPase [Corynebacterium matruchotii
           ATCC 14266]
          Length = 382

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           +QL+A+   RS  V    GSGKT +L      LL   +H   ++C+
Sbjct: 185 QQLVAA--RRSFLVIGGTGSGKTTLL----AALLGEVSHRQRIICI 224


>gi|256378538|ref|YP_003102198.1| superfamily I DNA and RNA helicase-like protein [Actinosynnema
           mirum DSM 43827]
 gi|255922841|gb|ACU38352.1| superfamily I DNA and RNA helicase-like protein [Actinosynnema
           mirum DSM 43827]
          Length = 693

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q + ++++ +D +    V    G+GKT + + RV  LL  +
Sbjct: 174 QREQDEVVRADASGPLIVQGGPGTGKTVVALHRVAYLLFTH 214


>gi|195381165|ref|XP_002049325.1| GJ21523 [Drosophila virilis]
 gi|194144122|gb|EDW60518.1| GJ21523 [Drosophila virilis]
          Length = 1307

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 10  HSETIDLISQTKS--EQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           H+E I    + +   +Q+  SD       V    G+GKT  + + + +L +     + +L
Sbjct: 608 HNEHIGRNPEQQQAVQQIAFSDKLPAPYIVFGPPGTGKTATICEAIYQLYVRRPE-THIL 666

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
            L  +  A  E++ R+L  I+        +          +  N  D+
Sbjct: 667 VLAGSNTACDEIALRLLRSISKVPSQPRPLTRIFAASCDRRIDNIDDL 714


>gi|195329716|ref|XP_002031556.1| GM23985 [Drosophila sechellia]
 gi|194120499|gb|EDW42542.1| GM23985 [Drosophila sechellia]
          Length = 1489

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 816 TPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALNQ 874

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +++ +     HL      +E L  E    +  + N   ++K   LL  + +    L 
Sbjct: 875 LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLSQVQKLQEALG 933

Query: 133 VQ 134
           V 
Sbjct: 934 VS 935


>gi|261405431|ref|YP_003241672.1| UvrD/Rep helicase family protein [Paenibacillus sp. Y412MC10]
 gi|261281894|gb|ACX63865.1| UvrD/Rep helicase family protein [Paenibacillus sp. Y412MC10]
          Length = 725

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           ++Y     + +   D++S  ++EQ       ++    +   AGSGKT + + R+  LL
Sbjct: 168 LVYRLGENKDNRLRDIVSTIQAEQDKIIRAAKNTALIIQGVAGSGKTTVALHRLAYLL 225


>gi|21233855|ref|NP_640153.1| helicase [Proteus vulgaris]
 gi|21203039|dbj|BAB93755.1| helicase [Proteus vulgaris]
          Length = 491

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          L++ T  ++ LAS   +     A AG+GKT  L+Q  +R    NA    +L +     A 
Sbjct: 3  LVALTDEQEKLASFTGQLLCGKAYAGTGKTFTLIQFSIR----NAD-KRILYIVF-NKAI 56

Query: 76 AE 77
           E
Sbjct: 57 RE 58


>gi|209515891|ref|ZP_03264753.1| conserved hypothetical protein [Burkholderia sp. H160]
 gi|209503739|gb|EEA03733.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 698

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 21  KSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTK 72
            S++ LA  D +    V   AG+GKT +L     + L  N  +    +L  T T+
Sbjct: 256 PSQRKLAEGDRSGPVRVLGGAGTGKT-VLAMHRAKWLAENRTSDAQKVLFTTFTR 309


>gi|194901916|ref|XP_001980497.1| GG18488 [Drosophila erecta]
 gi|190652200|gb|EDV49455.1| GG18488 [Drosophila erecta]
          Length = 1487

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 31/238 (13%)

Query: 18   SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
            + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 816  TPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALNQ 874

Query: 78   MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +  +++ +     HL      +E L  E    +  + N   ++K   LL  + +    L 
Sbjct: 875  LFEKIMALDIDERHLLRLGHGEEALETEKDYSRYGRVN-YVLAKRMDLLSQVQKLQEALG 933

Query: 133  VQ-----TIHAFCEAIMQQFPLEANITSHFA-----IA---DEEQSKKLIEEAKKST-LA 178
            V      T    CE     +    N+ + +      I    +E  + KL  E +K     
Sbjct: 934  VSGDNAYT----CET--AGYFYLYNVMARWEKFQSQICVHEEETDAGKLRAEFEKEFPFG 987

Query: 179  SIMLDNNEELKKA--FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234
                D  + L K   + E+++I+        ISDI +     +      + L R K +
Sbjct: 988  KFFADAPQPLFKGANYDELMDIA--CSNFRYISDIFNELEEFRAFELLRTGLDRSKYL 1043


>gi|149180788|ref|ZP_01859291.1| DEAD/DEAH box helicase [Bacillus sp. SG-1]
 gi|148851578|gb|EDL65725.1| DEAD/DEAH box helicase [Bacillus sp. SG-1]
          Length = 995

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 46/221 (20%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEI 85
            ++  +  +AGSGKT+    L  R+ +L   +     ++++ +T           R    
Sbjct: 302 GQNYLIQHSAGSGKTNSISWLAHRLAKLHNQDDDAMFNSVIVIT----------DR---- 347

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                 + D+ L   + +++ K      + K    L + + +   + + T        +Q
Sbjct: 348 -----RVLDKQLQDAVYQLEHKAGLVEKIDKDSSQLASAISSGTRIIITT--------LQ 394

Query: 146 QFPLEANITSHFA------IADEEQSKKLIEE--AKKSTLASIMLDNNEELKKAFYEILE 197
           +FP        FA      I DE  S +  +   A  + L+   L+   E  +   E L 
Sbjct: 395 KFPFIMEKVGDFAKGKYAIIIDEAHSSQGGKASTAMTNILSDKSLEEAVEADRIAEEEL- 453

Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRR-KIIEKS 237
                D+E  I+++I+       I FF      + K IEK 
Sbjct: 454 ----GDMEEKIAEVIAKSGRQDNISFFAFTATPKAKTIEKF 490


>gi|113866738|ref|YP_725227.1| flp pilus assembly ATPase CpaF [Ralstonia eutropha H16]
 gi|113525514|emb|CAJ91859.1| flp pilus assembly ATPase CpaF [Ralstonia eutropha H16]
          Length = 456

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 17/142 (11%)

Query: 8   QEHSETIDLISQTK--SEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
            + S+ ++L S T   ++ L A    + +  VS   GSGKT +L       +L+   P  
Sbjct: 201 LQVSDLVNLRSLTPPMAQLLQALSQAKVNVLVSGGTGSGKTTLL------NILSGFIPED 254

Query: 65  LLCLTHTKAAAAEMSH----RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH- 119
              +T   AA  ++      R+           +    A +      +P++  + + R  
Sbjct: 255 ERVVTIEDAAELQLRQPHVLRLETRPPNIEGKGEITQRALVRNALRMRPDRIILGEVRGG 314

Query: 120 ---LLITILETPGGLKVQTIHA 138
               ++  + T     + TIHA
Sbjct: 315 EALDMLNAMNTGHEGSLTTIHA 336


>gi|51512046|gb|AAU05245.1| putative DEAD/DEAH box helicase [Enterobacteria phage T5]
          Length = 928

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 14  IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D   +    ++    P     +V A+ G+GKT      V + L A   P   L +T+T+
Sbjct: 374 VDSPPEVPYLKINIVPPKGHITFVKASLGTGKTTA----VTKWLDAGVLPGNFLAVTNTR 429

Query: 73  A 73
           A
Sbjct: 430 A 430


>gi|329926775|ref|ZP_08281183.1| hypothetical protein HMPREF9412_6244 [Paenibacillus sp. HGF5]
 gi|328938975|gb|EGG35343.1| hypothetical protein HMPREF9412_6244 [Paenibacillus sp. HGF5]
          Length = 725

 Score = 38.3 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           ++Y     + +   D++S  ++EQ       ++    +   AGSGKT + + R+  LL
Sbjct: 168 LVYRLGENKDNRLRDIVSTIQAEQDKIIRAAKNTALIIQGVAGSGKTTVALHRLAYLL 225


>gi|291402679|ref|XP_002717721.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like
           [Oryctolagus cuniculus]
          Length = 620

 Score = 38.3 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  ++ PS  L LT T+    E++ ++       
Sbjct: 241 GRDILASADTGSGKTAAFLLPVIVRALCESSCPSA-LILTPTR----ELAVQIERQAKEL 295

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +       + G  P    + + R  +  I+ TPG L           I++Q  +
Sbjct: 296 MR---GLPCMRTVLLVGGLPMPPQLYRLRQRVKVIIATPGRL---------LDIIKQSSV 343

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           +   I     + DE  +   +  ++     L S+  D           ++  +    IE 
Sbjct: 344 DLRGI--KIVVVDEADTMLKMGFQQQVLDVLESVPSDCQ-------TLLVSATIPASIEQ 394

Query: 207 LISDIISN 214
           L S ++ +
Sbjct: 395 LSSQLLHD 402


>gi|256848344|ref|ZP_05553787.1| DNA helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714942|gb|EEU29920.1| DNA helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 772

 Score = 38.3 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 8   QEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q++ +T+  I  T  + +  +  + +    V    AGSGKT  ++QR+  LL
Sbjct: 199 QQNDQTMQNIVATIQQEQNDIIRNTSSDLLVVQGVAGSGKTSTILQRIAYLL 250


>gi|237807440|ref|YP_002891880.1| hypothetical protein Tola_0665 [Tolumonas auensis DSM 9187]
 gi|237499701|gb|ACQ92294.1| conserved hypothetical protein [Tolumonas auensis DSM 9187]
          Length = 623

 Score = 38.3 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            AGSGK+ IL  R  +LL        +L +T 
Sbjct: 244 PAGSGKSLILAARAAQLLGEG---KEVLVVTF 272


>gi|164424611|ref|XP_963674.2| hypothetical protein NCU06833 [Neurospora crassa OR74A]
 gi|157070587|gb|EAA34438.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 722

 Score = 38.3 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 17  ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            + +K +Q +A    T++  VSA  GSGKT          ++A      +  LT++K   
Sbjct: 52  FTPSKEQQEIAELCGTKNVVVSARPGSGKTAT-----AEAIVAAHPEKRVAVLTYSKRLQ 106

Query: 76  AEMSHRVL 83
            E   R+ 
Sbjct: 107 LETHRRLR 114


>gi|319941143|ref|ZP_08015479.1| hypothetical protein HMPREF9464_00698 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805500|gb|EFW02302.1| hypothetical protein HMPREF9464_00698 [Sutterella wadsworthensis
           3_1_45B]
          Length = 1658

 Score = 38.3 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 10/124 (8%)

Query: 16  LISQTKSEQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           L      EQL+ +   R   S  V    G+GKTH +   +   L        +L  +   
Sbjct: 239 LAKAANKEQLMIARRIREAGSVVVQGPPGTGKTHTIANLIGHFLSEG---KRILVTSQKT 295

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEI----TKIQGKKPNKSDMSKARHLLITILETP 128
            A + +  ++ +               EI    T+   +  + +D  + R +   + E  
Sbjct: 296 KALSVLKEKLPQSFRDLCVSRVSENQKEILDTATRFSERIESLNDRDEQRLIETLMAERL 355

Query: 129 GGLK 132
             L 
Sbjct: 356 NLLN 359


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score = 38.3 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 34/174 (19%)

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           + H  ++L LT +K    E+  +  E+I     L   +       +      +S + KA 
Sbjct: 227 DGHVLSILVLTFSK--CGEV-DKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKAL 283

Query: 119 HLLITILETPGGLKVQTIHA----FCEA--------IMQQFPLEANITSHFAIA------ 160
            L   + ++     V    A     C          ++ +   E  I     I       
Sbjct: 284 QLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEM-KELGIDPDIQILSKLIPY 342

Query: 161 --DEEQSKKLIEEAKKSTLASIM----------LDNNEELKKAFYEILEISNDE 202
             +E    +LIEE  +      M          L N + + KA+Y +  ++ D 
Sbjct: 343 CSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDN 396


>gi|124026184|ref|YP_001015300.1| exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus marinus
           str. NATL1A]
 gi|123961252|gb|ABM76035.1| possible exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus
           marinus str. NATL1A]
          Length = 573

 Score = 38.3 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 17  ISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ++    +Q  A +  +S     +S   G+GKT  ++Q +L+ L  N     +     T  
Sbjct: 135 LAHLNIQQKEAVNLVKSEQIILLSGGPGTGKTSTILQMLLQALTRNPTLD-IAMAAPTGK 193

Query: 74  AAAEMSHRVLEIITAWSHLSDEIL----SAEITKIQGKKPNKSDMSKARHLLITIL 125
           AA ++   +   I  +     + L    S  + K     PN    +  R L + ++
Sbjct: 194 AAKKLKDTIQAGIEDFDDPVKDKLSNIPSKTLHKWLEASPNGFRRNSQRLLKLDLI 249


>gi|46401844|ref|YP_006936.1| putative replication origin binding protein [Enterobacteria phage
           T5]
 gi|45775022|gb|AAS77154.1| putative replication origin binding protein [Enterobacteria phage
           T5]
 gi|59897242|gb|AAX12037.1| replication origin binding protein [Enterobacteria phage T5]
          Length = 928

 Score = 38.3 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 14  IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +D   +    ++    P     +V A+ G+GKT      V + L A   P   L +T+T+
Sbjct: 374 VDSPPEVPYLKINIVPPKGHITFVKASLGTGKTTA----VTKWLDAGVLPGNFLAVTNTR 429

Query: 73  A 73
           A
Sbjct: 430 A 430


>gi|113970476|ref|YP_734269.1| hypothetical protein Shewmr4_2139 [Shewanella sp. MR-4]
 gi|113885160|gb|ABI39212.1| hypothetical protein Shewmr4_2139 [Shewanella sp. MR-4]
          Length = 617

 Score = 38.3 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
            AGSGK+ IL  R  +LL        +L +T 
Sbjct: 244 PAGSGKSLILAARAAQLLGEG---KEVLVVTF 272


>gi|227512788|ref|ZP_03942837.1| DNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227083988|gb|EEI19300.1| DNA helicase [Lactobacillus buchneri ATCC 11577]
          Length = 764

 Score = 38.3 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++    +   +V   AGSGKT  ++QRV  LL
Sbjct: 211 QKEQNQIIRDTNSELLFVQGAAGSGKTAAVLQRVAYLL 248


>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 453

 Score = 38.3 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 29/228 (12%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTH-----ILVQRVLRLL-LANAHPSTLLCLTHTKAA 74
           + + + A    R    SA  G+GKT      +L   +   L      P   L LT T+  
Sbjct: 28  QQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQLHAKGRRPVRALILTPTREL 87

Query: 75  AAEMSHRVLEI-----ITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETP 128
           AA++   V +      I +        ++ ++ K++ G     +   +   L        
Sbjct: 88  AAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147

Query: 129 GGLKVQTIH--------AFCEAIMQQFPLEANITSH-----FAIADEEQSKKLIEEAKKS 175
             +++  +          F   I +   + A + +      F+    +  K L E+  ++
Sbjct: 148 DQIEILVLDEADRMLDMGFIHDIRR---VLAKLPAKRQNLLFSATFSDDIKALAEKLLRN 204

Query: 176 TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFF 223
            L   +   N    +   + +   + +    L+S +I      +++ F
Sbjct: 205 PLEIEVARRNTA-SEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVF 251


>gi|110598180|ref|ZP_01386457.1| exodeoxyribonuclease V, alpha subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110340194|gb|EAT58692.1| exodeoxyribonuclease V, alpha subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 582

 Score = 38.3 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLC 67
            ++T+      +      +   +   +S   G+GKT   V R+L LLL         +  
Sbjct: 139 FTDTLPGEDNRQKAAAAIALRRQLCIISGGPGTGKTST-VVRILALLLMQEGGLNLRIAM 197

Query: 68  LTHTKAAAAEMS 79
              T  AAA + 
Sbjct: 198 AAPTGKAAARLR 209


>gi|219883147|ref|YP_002478309.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219867272|gb|ACL47610.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 695

 Score = 38.3 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 89/245 (36%), Gaps = 63/245 (25%)

Query: 12  ETIDLISQTKSEQLL----ASDPTRSAWVSANAGSGKTHILVQRVLRLL----LANAHPS 63
           + +  + +   EQ        + T    V    G+GK+ + + RV  L+           
Sbjct: 203 DLLGFLLKLNPEQERFVTWGMNATGPTLVKGGPGTGKSTVALYRVRTLIQTLKANGIAEP 262

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L  T+T A                                        ++ +R LL +
Sbjct: 263 KVLFTTYTNA---------------------------------------LIAFSRQLLTS 283

Query: 124 IL-ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182
           +L +    + V T+ +   A++     EA       +AD  Q K LI++A++  LA + L
Sbjct: 284 LLGDDIQHVNVDTVDSIIYALV---CREAG---EPKLADANQLKILIQQARE--LAVLNL 335

Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL------WRRKIIEK 236
           + N   + A  +ILE    + +   +  +I  R  L+ +  + +           K+  +
Sbjct: 336 EGNLLQQHAQKQILENLTPDYLLEEMGRVIEGR-GLESLEDYQATPRAGRTVALNKVQRQ 394

Query: 237 SLWSI 241
           ++W++
Sbjct: 395 AIWTL 399


>gi|227329724|ref|ZP_03833748.1| exonuclease V subunit beta [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
          Length = 41

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 35 WVSANAGSGKTHILVQRVLRL 55
           + A+AG+GKT+ L    LRL
Sbjct: 21 LIEASAGTGKTYTLAALYLRL 41


>gi|257372988|ref|YP_003175762.1| exonuclease V subunit beta [Halomicrobium mukohataei DSM 12286]
 gi|257167712|gb|ACV49404.1| ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein
           (contains helicase and exonuclease domains)
           [Halomicrobium mukohataei DSM 12286]
          Length = 1142

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 27/192 (14%)

Query: 40  AGSGKTHILVQRVLR--LLLANAH---PSTLLCL-THTKAAAAEMSHRVLEIITAWSHLS 93
           AG GK+   V+RV    L+ A A    P   LC+ + ++  AA +   +   + A++   
Sbjct: 33  AGFGKSTT-VERVAAEALVEAGAQAAAPERGLCVVSFSREDAAGIVPGITAALAAFADDE 91

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
                                 ++R L   +        V TI +    +  +   E   
Sbjct: 92  QPT------------ATTISPERSRRLQERVRHADH---VGTIDSIFRTVFTEIHAEYGF 136

Query: 154 TSHFAIADEEQSKKLIEEAKKST-----LASIMLDNNEELKKAFYEILEISNDEDIETLI 208
                + ++ +   L E A  +      L +     +E            ++   ++TL+
Sbjct: 137 EQMPTVGNDARLSSLREAALDALRGRESLTARFDRLDEAYGDETASDGRGADGRTLDTLL 196

Query: 209 SDIISNRTALKL 220
               S + A +L
Sbjct: 197 ETARSAKRARRL 208


>gi|199594059|gb|ACH90516.1| ERI-6/7 [Caenorhabditis elegans]
          Length = 925

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 14/133 (10%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLA----SDPTRSAWVSANAGSGKTHILVQRVLRLLL 57
           I  NSF    +   +    + ++       ++  +   +    G+GKT  L   + RL+ 
Sbjct: 349 IELNSFDSMEKEAGIPFSNEKQRTAIKMALNENRKLVCIQGPPGTGKTFTLTLLLCRLIQ 408

Query: 58  ANAHPSTLLCLTHTKAAAAEMS-------HRVLEIITAWSHLSDEILSAEITKIQGKKPN 110
                  ++ L  T+ A A +         R+   +   + +        I K       
Sbjct: 409 QK---KQVVVLAPTREALANIRMMTKKTLKRMGIKVHEHALMDTNEYRDVINKSDRALMA 465

Query: 111 KSDMSKARHLLIT 123
             ++   R     
Sbjct: 466 AEEVRDLRKAFDN 478


>gi|195156285|ref|XP_002019031.1| GL26137 [Drosophila persimilis]
 gi|194115184|gb|EDW37227.1| GL26137 [Drosophila persimilis]
          Length = 1255

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
             G+GKT  LV+ VL+ ++ N     +L  T + +AA  ++ R++      +     I+S
Sbjct: 791 PPGTGKTVTLVEAVLQ-IVRNLPSCRILVATPSNSAADLITKRIIASKALVAGDFIRIVS 849

Query: 99  AEITKIQGKKPN 110
             + + +   P 
Sbjct: 850 QNVIERELIPPE 861


>gi|25019676|gb|AAL03923.2|U30252_11 unknown [Synechococcus elongatus PCC 7942]
          Length = 755

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 49/205 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSH 80
           +Q LA+    S  VSA  G+GK+  +       L          L  +T T++AA  +  
Sbjct: 22  QQQLAAWQAGSLAVSAVPGAGKSTGMAVAAAIALAQRPQRDRRQLYLVTVTRSAALNLRQ 81

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           +V E +                                        +  G  VQT+H+  
Sbjct: 82  KVRETLQQLGL-----------------------------------SAVGFTVQTLHSLS 106

Query: 141 EAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             I    P  +N+     ++  + +  +L+ +A    +        E     F ++L  +
Sbjct: 107 LQIASTAPDLSNLYWDQVSLVSDRRKAQLLRQAIDQWI--------EANPTLFQQLLRGT 158

Query: 200 NDEDIETLISDIISNRTALKLIFFF 224
                +  +++ +   + L+  F F
Sbjct: 159 G---FDGELAEQLRRSSVLRNEFLF 180


>gi|326332246|ref|ZP_08198526.1| ATP-dependent helicase HrpA [Nocardioidaceae bacterium Broad-1]
 gi|325949952|gb|EGD42012.1| ATP-dependent helicase HrpA [Nocardioidaceae bacterium Broad-1]
          Length = 1292

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLCLTHTKA 73
           + E + A+       + A   GSGKT  L +  L L      ++ +  P  +   +  + 
Sbjct: 29  RREDIAAAIRDHQVVIIAGETGSGKTTQLPKICLELGRGSNGIIGHTQPRRIAARSVAER 88

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            A+E+   + +++      +D+  +A   K+       +++ + R L
Sbjct: 89  IASELGTELGDLVGYQVRFTDKSSAASRIKLMTDGILLAELQRDRDL 135


>gi|198476076|ref|XP_002132255.1| GA25304 [Drosophila pseudoobscura pseudoobscura]
 gi|198137534|gb|EDY69657.1| GA25304 [Drosophila pseudoobscura pseudoobscura]
          Length = 1249

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
             G+GKT  LV+ VL+ ++ N     +L  T + +AA  ++ R++      +     I+S
Sbjct: 785 PPGTGKTVTLVEAVLQ-IVRNLPSCRILVATPSNSAADLITKRIIASKALVAGDFIRIVS 843

Query: 99  AEITKIQGKKPN 110
             + + +   P 
Sbjct: 844 QNVIEKELIPPE 855


>gi|193212302|ref|YP_001998255.1| dihydroxy-acid dehydratase [Chlorobaculum parvum NCIB 8327]
 gi|238692625|sp|B3QMA2|ILVD_CHLP8 RecName: Full=Dihydroxy-acid dehydratase; Short=DAD
 gi|193085779|gb|ACF11055.1| dihydroxy-acid dehydratase [Chlorobaculum parvum NCIB 8327]
          Length = 560

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 9/42 (21%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           +LA+DP R+  V A AG         R++ L+  +  P ++L
Sbjct: 220 ILAADPRRNELVKAAAG---------RIVDLVNKDVRPRSIL 252


>gi|148702387|gb|EDL34334.1| helicase with zinc finger domain [Mus musculus]
          Length = 1992

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q    +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAAKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|215275649|sp|Q6DFV5|HELZ_MOUSE RecName: Full=Probable helicase with zinc finger domain
 gi|123262625|emb|CAM21447.1| helicase with zinc finger domain [Mus musculus]
          Length = 1964

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q    +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAAKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|123262624|emb|CAM21446.1| helicase with zinc finger domain [Mus musculus]
          Length = 1616

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q    +L      + +L  TH+
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAAKHILQQQE--TRILICTHS 699

Query: 72  KAAA 75
            +AA
Sbjct: 700 NSAA 703


>gi|26006099|dbj|BAC41393.1| mKIAA0054 protein [Mus musculus]
          Length = 1617

 Score = 38.3 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E +LA     S       +    G+GKT  L Q    +L      + +L  TH+
Sbjct: 643 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAAKHILQQQE--TRILICTHS 700

Query: 72  KAAA 75
            +AA
Sbjct: 701 NSAA 704


>gi|224092681|ref|XP_002187594.1| PREDICTED: F-box protein, helicase, 18 [Taeniopygia guttata]
          Length = 684

 Score = 38.3 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 17  ISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +  T  +Q + S   +P ++  + A AG+GKT  LV+               L L     
Sbjct: 195 VKLTHEQQRILSHKIEPGQTVKIMAFAGTGKTSTLVK-----YAEKFSELKFLYLAF-NK 248

Query: 74  AAAEMSHRVL 83
           A AE   +V 
Sbjct: 249 AVAEKGEKVF 258


>gi|225454589|ref|XP_002264216.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 953

 Score = 38.3 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 12  ETIDLISQTKSEQLLAS---DPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLC 67
           E ++  +   S++   +   +  R   +     G+GKT +L + +   +        +L 
Sbjct: 472 ELLESGAYDDSQRRAIALGLNKKRPILIIQGPPGTGKTVLLKELIALAVQQG---ERVLV 528

Query: 68  LTHTKAAAAEMSHRVLEI 85
              T AA   M  ++  I
Sbjct: 529 TAPTNAAVDNMVEKLSNI 546


>gi|78184982|ref|YP_377417.1| exodeoxyribonuclease V [Synechococcus sp. CC9902]
 gi|78169276|gb|ABB26373.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Synechococcus
           sp. CC9902]
          Length = 530

 Score = 38.3 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +++ + + +LA D      +S   G+GKT  +V+ + R+ L +      L    T  AA 
Sbjct: 128 LNREQRDAVLALDQASVVLISGGPGTGKTSTVVELLARVQLHHPDLRMGLAAP-TGKAAR 186

Query: 77  EMSHRVLEIITAW 89
            +   V   +   
Sbjct: 187 RLGDAVRPRLKGL 199


>gi|294948696|ref|XP_002785849.1| hypothetical protein Pmar_PMAR023566 [Perkinsus marinus ATCC 50983]
 gi|239899957|gb|EER17645.1| hypothetical protein Pmar_PMAR023566 [Perkinsus marinus ATCC 50983]
          Length = 965

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           S Q     ++ +++++   + A+  +R   +    G+GKT ++V  V   L  N     +
Sbjct: 467 SVQPTPVDLEGLTESQKSAVRAAVSSRLTLIQGPPGTGKTFVVVAIVKHWLKTNPEFP-I 525

Query: 66  LCLTHTKAA 74
           L    T AA
Sbjct: 526 LVCAGTHAA 534


>gi|171915573|ref|ZP_02931043.1| DEAD/DEAH box helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 1025

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 49/221 (22%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78
              A  P  +  +  +AGSGK++    L  R+  L  ++      +++ +T         
Sbjct: 293 AARAEGPGHNYLIENSAGSGKSNTIGWLAHRLASLHNSSDERVFQSVIVIT--------- 343

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             R+         + D+ L   I + + ++     + ++   L   LE    + + T+  
Sbjct: 344 -DRL---------VLDQQLQDTIYQFEHRQGVVQKIDESSRQLAEALENEVPIIITTM-- 391

Query: 139 FCEAIMQQFPLEA----------NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-- 186
                 Q+FP  +            + +  +        +I+EA  S       +  E  
Sbjct: 392 ------QKFPFVSRQLLKLAEKRGESGN-GVLTTRNCAVIIDEAHSSQSGETATEVKEVL 444

Query: 187 ---ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFF 224
              EL++   E        ++E L   + + R   K + FF
Sbjct: 445 GGDELRRQAVERAAEEGLTNLEELCRSM-AKRGRQKSLSFF 484


>gi|288556690|ref|YP_003428625.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547850|gb|ADC51733.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 487

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 7   FQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHI----LVQRVLRLLLANA 60
            Q+  + ++    T  ++ +   +   +   V A  GSGKT      L ++V+       
Sbjct: 21  VQKALDLLNYKKLTNVQEKVVPVAIAEKDVIVKAQTGSGKTAAYAIPLCEKVIW---EEN 77

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEI 85
            P   L LT T+  AA++   ++ I
Sbjct: 78  KPQA-LVLTPTRELAAQVKEEIINI 101


>gi|227522912|ref|ZP_03952961.1| DNA helicase [Lactobacillus hilgardii ATCC 8290]
 gi|227089941|gb|EEI25253.1| DNA helicase [Lactobacillus hilgardii ATCC 8290]
          Length = 764

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++    +   +V   AGSGKT  ++QRV  LL
Sbjct: 211 QKEQNQIIRDTNSELLFVQGAAGSGKTAAVLQRVAYLL 248


>gi|224003229|ref|XP_002291286.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973062|gb|EED91393.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1134

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 55/132 (41%), Gaps = 13/132 (9%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           + +++S  L  +  +R A +    G+GKT  +   + +++  N+   ++LC+ +T  A  
Sbjct: 487 LDESQSTALGMALTSRVALIQGPPGTGKTF-IGSLIAQIIRDNSD-ESILCVCYTNHALD 544

Query: 77  E----MSHRVLEII-----TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           +    M  R  + +        S   ++     ++K +          + R ++  + + 
Sbjct: 545 QFLEHMLKRGEKRLVRIGGRTRSEALEKFGLNALSKKERSLALSESDKRMRSVVAQMYKC 604

Query: 128 PGGLK--VQTIH 137
              +   +QT+H
Sbjct: 605 KDEISLLLQTLH 616


>gi|56751600|ref|YP_172301.1| hypothetical protein syc1591_d [Synechococcus elongatus PCC 6301]
 gi|81301324|ref|YP_401532.1| putative DNA helicase [Synechococcus elongatus PCC 7942]
 gi|56686559|dbj|BAD79781.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170205|gb|ABB58545.1| putative DNA helicase [Synechococcus elongatus PCC 7942]
          Length = 755

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 49/205 (23%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSH 80
           +Q LA+    S  VSA  G+GK+  +       L          L  +T T++AA  +  
Sbjct: 22  QQQLAAWQAGSLAVSAVPGAGKSTGMAVAAAIALAQRPQRDRRQLYLVTVTRSAALNLRQ 81

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140
           +V E +                                        +  G  VQT+H+  
Sbjct: 82  KVRETLQQLGL-----------------------------------SAVGFTVQTLHSLS 106

Query: 141 EAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199
             I    P  +N+     ++  + +  +L+ +A    +        E     F ++L  +
Sbjct: 107 LQIASTAPDLSNLYWDQVSLVSDRRKAQLLRQAIDQWI--------EANPTLFQQLLRGT 158

Query: 200 NDEDIETLISDIISNRTALKLIFFF 224
                +  +++ +   + L+  F F
Sbjct: 159 G---FDGELAEQLRRSSVLRNEFLF 180


>gi|312887592|ref|ZP_07747186.1| Ankyrin [Mucilaginibacter paludis DSM 18603]
 gi|311299962|gb|EFQ77037.1| Ankyrin [Mucilaginibacter paludis DSM 18603]
          Length = 953

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTH-------ILVQRVL 53
           + Y N  ++    +D I      Q           +  +AGSGKT        IL  RVL
Sbjct: 111 ITYINPNKKSFHLLDKILSFDETQDEILHLPAPGIIIGSAGSGKTALTLEKAKILTGRVL 170

Query: 54  RLLLANAHPST 64
            + L+      
Sbjct: 171 YITLSGYLVEN 181


>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
 gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
          Length = 449

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 25/201 (12%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    R    +A  G+GKT      +L +L     P       L LT 
Sbjct: 22  DTPSAIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPILEILSQGPRPRANQARTLILTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ ++ E I  +S    + L    T + G       M++ R  +  ++ TPG 
Sbjct: 82  TR----ELAAQIAENIEVYS----KHLRLTSTVVFGGVKINPQMTRLRRGVDILVATPGR 133

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           L    +  + +  ++   LE        + DE    ++++      +  I+    ++ + 
Sbjct: 134 L----LDLYNQNAIRFHQLEI------LVLDEAD--RMLDMGFLRDIRKILAVLPQKRQN 181

Query: 191 AFYEILEISNDEDI-ETLISD 210
             +      +   +   LI+D
Sbjct: 182 LLFSATFSDDIRQLARGLIND 202


>gi|312382590|gb|EFR27997.1| hypothetical protein AND_04685 [Anopheles darlingi]
          Length = 1210

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           + E  + +   + T+ E + A        V    G+GKT + VQ ++  L  N      L
Sbjct: 494 YNEPKKNVIRFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNHPQQRTL 552

Query: 67  CLTHTKAAAAEMSHRVLEI 85
            +TH+  A  ++  +++ +
Sbjct: 553 IVTHSNQALNQLFEKIMAL 571


>gi|237741885|ref|ZP_04572366.1| DNA helicase [Fusobacterium sp. 4_1_13]
 gi|229429533|gb|EEO39745.1| DNA helicase [Fusobacterium sp. 4_1_13]
          Length = 1475

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 9/123 (7%)

Query: 16  LISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              ++ +EQ+       S     V    G+GKTH +   +   L        +L  + T+
Sbjct: 341 FTKESNNEQIEIVKNIYSHKAVVVQGPPGTGKTHTIANLLGHFLAEG---KNVLITSQTR 397

Query: 73  AAAAEMSHRV---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A   +  ++   ++ +       D        +   +K +  ++ K R     +     
Sbjct: 398 KALEVLKEKIPSDIQDLCISMLNDDNSDLGNSVESISEKLSYLNLEKLRDEYEELARNRN 457

Query: 130 GLK 132
            +K
Sbjct: 458 EVK 460


>gi|284031577|ref|YP_003381508.1| ATP-dependent helicase HrpA [Kribbella flavida DSM 17836]
 gi|283810870|gb|ADB32709.1| ATP-dependent helicase HrpA [Kribbella flavida DSM 17836]
          Length = 1310

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLA 58
           +  E S   +L      + + A+       V A   GSGKT  + +  L L      L+ 
Sbjct: 61  AVPEISYPEELPVSQLKDDIAAAIRDHQVVVIAGETGSGKTTQIPKICLELGRGVQGLIG 120

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           +  P  L   T  +  A E+   + + I      +D++    + K+       +++ + R
Sbjct: 121 HTQPRRLAARTVAERIAEELGTELGDTIGYAVRFTDKVSERSLVKLMTDGILLNELQRDR 180

Query: 119 HL 120
            L
Sbjct: 181 DL 182


>gi|224051370|ref|XP_002199637.1| PREDICTED: aquarius homolog (mouse) [Taeniopygia guttata]
          Length = 1711

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 1/113 (0%)

Query: 20   TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  ++ 
Sbjct: 1054 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNLYHNFPEQRTLIVTHSNQALNQLF 1112

Query: 80   HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             +++ +     HL       E  + +        ++      + +L+  G L+
Sbjct: 1113 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRLELLQEVGRLQ 1165


>gi|145594257|ref|YP_001158554.1| ATP-dependent helicase HrpA [Salinispora tropica CNB-440]
 gi|145303594|gb|ABP54176.1| ATP-dependent helicase HrpA [Salinispora tropica CNB-440]
          Length = 1339

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 20  TKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLCLTHTK 72
            + +++ A+       + A   GSGKT  L +  L L      L+ +  P  L   T   
Sbjct: 85  DRRDEIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVHGLIGHTQPRRLAARTVAD 144

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             A E+   + E++      +D++    + K+       +++   R L
Sbjct: 145 RIAEELGTELGEVVGYQVRFADQVSDRSLVKLMTDGILLAELQHDRML 192


>gi|209515890|ref|ZP_03264752.1| Superfamily I DNA and RNA helicase-like protein [Burkholderia sp.
           H160]
 gi|209503738|gb|EEA03732.1| Superfamily I DNA and RNA helicase-like protein [Burkholderia sp.
           H160]
          Length = 878

 Score = 37.9 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 41  GSGKTHILVQRVLRLLLANAHPST-LLCLTHTKA 73
           GSGKT +L+ R +RL  A  +P   +L LT  +A
Sbjct: 292 GSGKTSVLIHRAIRL--ARLYPEQKILVLTLNRA 323


>gi|330791351|ref|XP_003283757.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
 gi|325086380|gb|EGC39771.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
          Length = 1580

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 35   WVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91
             V    G+GKTH L   VL  + +      P  +   + T  A   +  R+  +   +S 
Sbjct: 1093 LVRGPPGTGKTHFLALIVLIFMESYKRLGKPFRIAITSFTHNAIDNLLIRIASLKKEYST 1152

Query: 92   LSDEILSAEITKIQGKKPNKSDMSKAR 118
               + ++  + K Q K      ++K +
Sbjct: 1153 SVGQDINFPLFKKQTKLSEDLKLNKIQ 1179


>gi|170034696|ref|XP_001845209.1| intron-binding protein aquarius [Culex quinquefasciatus]
 gi|167876080|gb|EDS39463.1| intron-binding protein aquarius [Culex quinquefasciatus]
          Length = 1221

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 499 TPTQLEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALNQ 557

Query: 78  MSHRVLEI 85
           +  +++ +
Sbjct: 558 LFEKIMAL 565


>gi|164655857|ref|XP_001729057.1| hypothetical protein MGL_3845 [Malassezia globosa CBS 7966]
 gi|159102946|gb|EDP41843.1| hypothetical protein MGL_3845 [Malassezia globosa CBS 7966]
          Length = 1118

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAA 75
           ++ ++ + +      R + V    G+GKT  LVQ V  LL  +   P  +L   HT  A 
Sbjct: 534 LNASQLQAVAMMLKERVSLVQGPPGTGKTRTLVQTV-SLLKRHFQVPHPILLAAHTNVAV 592

Query: 76  AEMSH 80
             ++ 
Sbjct: 593 DNLAE 597


>gi|238794335|ref|ZP_04637947.1| ATPase associated with various cellular activities, AAA_5 [Yersinia
           intermedia ATCC 29909]
 gi|238726329|gb|EEQ17871.1| ATPase associated with various cellular activities, AAA_5 [Yersinia
           intermedia ATCC 29909]
          Length = 651

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           Q L     ++  +    G+GKT  L +R+   L+    P  +  +  
Sbjct: 382 QRLID--KKNLILQGPPGTGKTW-LARRLAYCLMGEQAPERISAVQF 425


>gi|330989751|gb|EGH87854.1| hypothetical protein PLA107_32326 [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 465

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSSAKKLLVQAFAGTGKTTTLV 33


>gi|256845228|ref|ZP_05550686.1| DNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|294785468|ref|ZP_06750756.1| DNA helicase [Fusobacterium sp. 3_1_27]
 gi|256718787|gb|EEU32342.1| DNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|294487182|gb|EFG34544.1| DNA helicase [Fusobacterium sp. 3_1_27]
          Length = 1475

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 9/123 (7%)

Query: 16  LISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              ++ +EQ+       S     V    G+GKTH +   +   L        +L  + T+
Sbjct: 341 FTKESNNEQIEIVKNIYSHKAVVVQGPPGTGKTHTIANLLGHFLAEG---KNVLITSQTR 397

Query: 73  AAAAEMSHRV---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A   +  ++   ++ +       D        +   +K    ++ K R     +     
Sbjct: 398 KALEVLKEKIPSDIQDLCISMLNDDNSDLGNSVESISEKLGYLNLEKLRDEYEELARNRN 457

Query: 130 GLK 132
            +K
Sbjct: 458 EVK 460


>gi|294889365|ref|XP_002772776.1| hypothetical protein Pmar_PMAR019626 [Perkinsus marinus ATCC 50983]
 gi|239877326|gb|EER04592.1| hypothetical protein Pmar_PMAR019626 [Perkinsus marinus ATCC 50983]
          Length = 705

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ++ +++++   + A+  +R   +    G+GKT ++V  V   L  N     +L    T A
Sbjct: 158 LEGLTESQKSAVRAAVSSRLTLIQGPPGTGKTFVVVAIVKHWLKTNPEFP-ILVCAGTHA 216

Query: 74  A 74
           A
Sbjct: 217 A 217


>gi|34763262|ref|ZP_00144222.1| DNA helicase [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887059|gb|EAA24170.1| DNA helicase [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 1425

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 9/123 (7%)

Query: 16  LISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
              ++ +EQ+       S     V    G+GKTH +   +   L        +L  + T+
Sbjct: 291 FTKESNNEQIEIVKNIYSHKAVVVQGPPGTGKTHTIANLLGHFLAEG---KNVLITSQTR 347

Query: 73  AAAAEMSHRV---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            A   +  ++   ++ +       D        +   +K    ++ K R     +     
Sbjct: 348 KALEVLKEKIPSDIQDLCISMLNDDNSDLGNSVESISEKLGYLNLEKLRDEYEELARNRN 407

Query: 130 GLK 132
            +K
Sbjct: 408 EVK 410


>gi|327404581|ref|YP_004345419.1| DEAD-like helicase [Fluviicola taffensis DSM 16823]
 gi|327320089|gb|AEA44581.1| DEAD-like helicase [Fluviicola taffensis DSM 16823]
          Length = 591

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 70/189 (37%), Gaps = 26/189 (13%)

Query: 8   QEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           +  S + DL++ ++ E +        +  +    G+GKTH L   +  L+        +L
Sbjct: 154 ETSSFSADLLNNSQQEAVGAILSSDLTTVIQGPPGTGKTHTLSIAIAELVNRG---KKVL 210

Query: 67  CLTHTKAAAAEM-SHRVLEIITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLIT 123
               +  A   +    +   I+     ++E +SAE+    I            ++ +   
Sbjct: 211 VTAPSNTAVDNLCKKLIAAKISLLRVGNNEKVSAEVIPYTIDAYLEGGKTAQYSQTIKKQ 270

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIML 182
           I +T                ++ +  EA        ADE  Q+K+ + E +K  L  +  
Sbjct: 271 IQKTEQVAN---------RTIRNYTKEA--------ADEKRQAKRDLRELQKE-LRKLAQ 312

Query: 183 DNNEELKKA 191
           D  ++L ++
Sbjct: 313 DTEQQLIES 321


>gi|301386386|ref|ZP_07234804.1| hypothetical protein PsyrptM_27305 [Pseudomonas syringae pv. tomato
           Max13]
          Length = 215

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T+ +        +   V A AG+GKT  LV         +     +L L +   A  
Sbjct: 1   MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLVG-----YATHNSSVKMLYLCY-NKAV- 53

Query: 77  EM--SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           EM   +R    +T  +                +  N      AR +     E    + V 
Sbjct: 54  EMAAKNRFPRNVTCKTAHGLAYAVYGSQYKHKQAGNLRLTDIARTINTQDWELAKDI-VS 112

Query: 135 TIHAF 139
           T++AF
Sbjct: 113 TLNAF 117


>gi|294896732|ref|XP_002775704.1| splicing endonuclease positive effector sen1, putative [Perkinsus
           marinus ATCC 50983]
 gi|239881927|gb|EER07520.1| splicing endonuclease positive effector sen1, putative [Perkinsus
           marinus ATCC 50983]
          Length = 674

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 17  ISQTKSEQLL-ASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           ++Q +   +  A+D +     V    G+GKT  +V  V  LL      +TL+    + AA
Sbjct: 155 LNQAQLRAVTSAADVSSPITLVQGPPGTGKTKTIVAMVKALLKTT---NTLVICAPSNAA 211

Query: 75  AAEMSHRVLEIITAWSHLSDE 95
             E++ R++        LSD 
Sbjct: 212 VDELASRIMASWPPSKSLSDA 232


>gi|195036056|ref|XP_001989487.1| GH18832 [Drosophila grimshawi]
 gi|193893683|gb|EDV92549.1| GH18832 [Drosophila grimshawi]
          Length = 1499

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 815 TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNQPSQRTLIVTHSNQALNQ 873

Query: 78  MSHRVLEI 85
           +  +++ +
Sbjct: 874 LFEKIMAL 881


>gi|221640449|ref|YP_002526711.1| AAA ATPase [Rhodobacter sphaeroides KD131]
 gi|221161230|gb|ACM02210.1| AAA ATPase [Rhodobacter sphaeroides KD131]
          Length = 512

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 53/165 (32%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L      L+ A                  TL  L  T  AA+ +  R     
Sbjct: 54  AGSGKTMLLASLTKALIEAGLEVVSGDWEGRKRKERRTLAILAPTNKAASVLRLRGVPAT 113

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+ +  +       AE     GK+P      ++ + +A+     +   PG L    
Sbjct: 114 TIHRILYSPVYDPQYERIAEWLAGNGKRPEVEGLSETALDRAKAFYEQVPSIPGALA--- 170

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           +  PL+       ++ DE Q   L E
Sbjct: 171 ----AAGLRGSDFIKGWKRRDEPLDVGFVDEASMLDERQFDDLRE 211


>gi|124262664|ref|YP_001023134.1| hypothetical protein Mpe_B0120 [Methylibium petroleiphilum PM1]
 gi|124261910|gb|ABM96899.1| hypothetical protein Mpe_B0120 [Methylibium petroleiphilum PM1]
          Length = 647

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTH 70
          + +  +  T  + L+         V A AG+GKT  L++   R     A+P   +L L  
Sbjct: 18 QIMTTLQLTPEQSLIVHSSVDVLLVQAFAGTGKTSTLIE-YAR-----ANPHLRILYLAF 71

Query: 71 TKA 73
          +KA
Sbjct: 72 SKA 74


>gi|114571726|ref|XP_001143546.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 619

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L ++  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENVPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|114571724|ref|XP_001143470.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 isoform 2 [Pan
           troglodytes]
          Length = 567

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L ++  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENVPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|114571722|ref|XP_001143404.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 isoform 1 [Pan
           troglodytes]
          Length = 580

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L ++  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENVPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|308177021|ref|YP_003916427.1| ATP-dependent helicase HrpA [Arthrobacter arilaitensis Re117]
 gi|307744484|emb|CBT75456.1| ATP-dependent helicase HrpA [Arthrobacter arilaitensis Re117]
          Length = 1319

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 20  TKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLCLTHTK 72
            + E +LA+       V A   GSGKT  L + ++ L      ++ +  P  L   T  +
Sbjct: 15  ARREDILAAVRENQVVVIAGETGSGKTTQLPKMLIELGLAEKGMIGHTQPRRLAARTVAE 74

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             A EM   + E +      + E+      K+       +++ + + L
Sbjct: 75  RIAEEMGTEIGEEVGFHVRFTGEVSRKTKLKVMTDGILLAEIKRDKLL 122


>gi|255019436|ref|ZP_05291543.1| UvrD/REP helicase [Acidithiobacillus caldus ATCC 51756]
 gi|254971134|gb|EET28589.1| UvrD/REP helicase [Acidithiobacillus caldus ATCC 51756]
          Length = 679

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76
          T  +  +A      A V A  GSGK+      + + + A    P  +L +     AA 
Sbjct: 3  TDEQIAIAQHRRGHALVRAVPGSGKSTAARHLIAQHVRAGWTAPEHILTVCFNVDAAR 60


>gi|116072447|ref|ZP_01469714.1| Exodeoxyribonuclease V [Synechococcus sp. BL107]
 gi|116064969|gb|EAU70728.1| Exodeoxyribonuclease V [Synechococcus sp. BL107]
          Length = 530

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 23/45 (51%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR 54
            ++    +++ + + +LA D      +S   G+GKT  +V+ + R
Sbjct: 121 STDLPSSLNREQRDAVLALDQASVVLISGGPGTGKTSTVVELLAR 165


>gi|99078079|ref|YP_611337.1| ATPase [Ruegeria sp. TM1040]
 gi|99035217|gb|ABF62075.1| ATPase [Ruegeria sp. TM1040]
          Length = 517

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 53/165 (32%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L +    L  A                  TL  L  T  AA+ +  R     
Sbjct: 56  AGSGKTLLLSEFYKALAAAGVEVVSGDYESRKKGEKRTLAILAPTNKAASVLRLRGVPAT 115

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+    +  +    AE    +G +P         +++A     T    PG L    
Sbjct: 116 TIHRILYTPVYDPEYERIAEWLAGEGDRPEIEGLSDEALARAEAFYATNKSIPGALA--- 172

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           ++ PL+       ++ D+ Q + L E
Sbjct: 173 ----AAGLRGSDFITGWKRREEPLDIGFVDEASMLDDRQFEDLKE 213


>gi|229085660|ref|ZP_04217890.1| UvrD/REP helicase [Bacillus cereus Rock3-44]
 gi|228697617|gb|EEL50372.1| UvrD/REP helicase [Bacillus cereus Rock3-44]
          Length = 786

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           N+     ++I    Q +  Q++ ++ +R   V   AGSGKT   +QRV  LL
Sbjct: 200 NNANTQMKSIVSTIQKEQNQIIRNEKSRLLVVQGAAGSGKTSAALQRVAYLL 251


>gi|254422698|ref|ZP_05036416.1| UvrD/REP helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196190187|gb|EDX85151.1| UvrD/REP helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 714

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 12/126 (9%)

Query: 12  ETIDLISQTKSEQLL----ASDPTRSAWVSANAGSGKTHILVQR----VLRLLLANAHPS 63
             +  + +   EQ      A D      +    G+GK+ + + R    + RL        
Sbjct: 213 NLLGFLLKLNPEQEKYVTWAIDSKGPTLLKGGPGTGKSTVALYRTREVLARLKAEGIAKP 272

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD----EILSAEITKIQGKKPNKSDMSKARH 119
            +L  T+T A        + +++ A +   +    + ++  +      KP  +  ++ + 
Sbjct: 273 KILFTTYTNALVKFSQQLLTQLLEADAKFVEVKTADKIAYRLVVKATGKPAIASHAQQKR 332

Query: 120 LLITIL 125
           LL   L
Sbjct: 333 LLKQAL 338


>gi|260776112|ref|ZP_05885007.1| ATP-dependent helicase HrpA [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607335|gb|EEX33600.1| ATP-dependent helicase HrpA [Vibrio coralliilyticus ATCC BAA-450]
          Length = 1317

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 84  EYPEIL-PVSQKRDDIAKAIENNQVVIVAGETGSGKTTQLPKICAELGRGQYGLIGHTQP 142

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 143 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISDNTQIKLMTDGILLAEIQHDRFL 200


>gi|300781906|ref|YP_003739141.1| hypothetical protein EbC_pEb10200840 [Erwinia billingiae Eb661]
 gi|299060172|emb|CAX53362.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 501

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 6/123 (4%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T+ +  + +   +   V+A AG+GKT  L       L        +L L +   A  
Sbjct: 1   MKPTQEQAQIIAWKGKQLVVTAFAGTGKTSTLE---AYALANPQ--ERMLYLAY-NRAIR 54

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
           E S R                 +     Q +      ++    LL T         + T+
Sbjct: 55  EESERRFPFNVECRTFHQLAWPSFGRHFQARLATSLRVTDIARLLNTRHWLLARTALSTL 114

Query: 137 HAF 139
           + F
Sbjct: 115 NTF 117


>gi|288929746|ref|ZP_06423589.1| DNA helicase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328847|gb|EFC67435.1| DNA helicase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 558

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTK 72
          KSEQ +  D      V+A  G+GKTH L+  + +++  +        + C+T+T 
Sbjct: 6  KSEQTIPID--EPFKVTAGPGAGKTHWLINHIKKVVSNSHKLDVVRKVACITYTN 58


>gi|304316033|ref|YP_003851178.1| ATP-dependent DNA helicase replicase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777535|gb|ADL68094.1| ATP-dependent DNA helicase replicase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 743

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLL----ANAHPSTLLCL 68
           + + ++  D      +    AGSGKT I + R+  LL      N     +L +
Sbjct: 210 REQDIIIRDTDSDILIVQGVAGSGKTSIALHRIAYLLYFGRDKNLKKDDILII 262


>gi|301162231|emb|CBW21776.1| hypothetical protein BF638R_1226 [Bacteroides fragilis 638R]
          Length = 1302

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 9/131 (6%)

Query: 11  SETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           S  I  +++ + E +  S   +    +    G+GKT ++ + + + +  N     +L  +
Sbjct: 790 SHKIGNLNEKQLEAVTKSVLAKDLALIQGPPGTGKTTVIAEIIWQEIRRNPD-CRILLTS 848

Query: 70  HTKAAAAEMSHRVLE-------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  A      R+          I     L  E     +  I+     +   S    L++
Sbjct: 849 QTNLAVDNALERLQGQAGIRPVRIGKPEKLEPEGRRFSLPIIRSWTEGREKYSVRDDLVL 908

Query: 123 TILETPGGLKV 133
                   + +
Sbjct: 909 DTANNASKMWI 919


>gi|298241611|ref|ZP_06965418.1| transcriptional activator domain protein [Ktedonobacter racemifer
           DSM 44963]
 gi|297554665|gb|EFH88529.1| transcriptional activator domain protein [Ktedonobacter racemifer
           DSM 44963]
          Length = 1115

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 33/207 (15%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQ-------RVLRLLLANAHPSTLLCLTHTKA 73
           +  Q      ++   + A AG GKT IL         R    +L          +T    
Sbjct: 39  QHSQPQIQAASKLILLLAPAGYGKTTILADFASRGNARYCWYMLDRTDSD---IITF--- 92

Query: 74  AAAEMSHR----VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
                  R    + + +  +    D+IL +   +   +    S +       +  LET  
Sbjct: 93  -----LQRLVLSIRQQLPNFGEELDDILVSIAQEHIRETEGISHLIPLLDAFLQALETET 147

Query: 130 GLKVQTIHAFCEA-------IMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
             +V  +  FC         I+ Q    L   +  H+A+  E ++   +E A       +
Sbjct: 148 KQQVVLL--FCNYQEVNDTPILNQVTNYLLRGLPPHYALVIESRAIPELEFAHLLAHNQV 205

Query: 181 MLDNNEELKKAFYEILEISNDEDIETL 207
                ++L+ + +E+  ++  + I +L
Sbjct: 206 YSFTQDDLRFSAHEVARLAQIQGIPSL 232


>gi|256825965|ref|YP_003149925.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689358|gb|ACV07160.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547]
          Length = 695

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D++S  + EQ +   +D   +  V    G+GKT + + RV  LL
Sbjct: 182 DIVSTIQPEQDVIVRADAATTVCVQGAPGTGKTAVGLHRVAWLL 225


>gi|225465635|ref|XP_002270253.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 24/144 (16%)

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           + H  ++L LT +K    E+  +  E+I     L   +       +      +S + KA 
Sbjct: 267 DGHVLSILVLTFSK--CGEV-DKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKAL 323

Query: 119 HLLITILETPGGLKVQTIHA----FCEA--------IMQQFPLEANITSHFAIA------ 160
            L   + ++     V    A     C          ++ +   E  I     I       
Sbjct: 324 QLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEM-KELGIDPDIQILSKLIAY 382

Query: 161 --DEEQSKKLIEEAKKSTLASIML 182
             +E    +LIEE  +      ML
Sbjct: 383 CSEEVDIYRLIEERLEDLDTEAML 406


>gi|254482010|ref|ZP_05095252.1| ATP-dependent helicase HrpA [marine gamma proteobacterium HTCC2148]
 gi|214037700|gb|EEB78365.1| ATP-dependent helicase HrpA [marine gamma proteobacterium HTCC2148]
          Length = 1245

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHPSTLLCLTH 70
           +SQ + E   A    +   V+   GSGKT  L +  L L      L+ +  P  L   T 
Sbjct: 20  VSQRREEIAAAIAKNQVVIVAGETGSGKTTQLPKICLELGRGQSGLIGHTQPRRLAARTV 79

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            +  A E+   +  ++      +D++      K+       +++ + R L
Sbjct: 80  AQRIAQELKTELGAVVGYQVRFNDKVSEHTAVKLMTDGILLAEIQRDRLL 129


>gi|302345453|ref|YP_003813806.1| type III restriction enzyme, res subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149900|gb|ADK96162.1| type III restriction enzyme, res subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 1209

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 70/205 (34%), Gaps = 40/205 (19%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
             +  V  +AGSGKT     L  ++  +   +      +++ +T           R+   
Sbjct: 288 GHNYLVWHSAGSGKTKTMAWLAHQLANMTNEDHSCVFDSIIMVT----------DRI--- 334

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT---IHAFCEA 142
                 + +  ++ ++   +       D+      L T ++    + + T     AF   
Sbjct: 335 ------VLNRNMAEDVVNFEDVVGTVKDVRHGSKNLATAIDEGHRIIISTVQKF-AFALK 387

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
            +++          +A+  +E    +  E+ K  + ++  D + +    F       N +
Sbjct: 388 TLKREKHR-----QYAVIIDEAHTAVGNESAKDLVNALSTDEDLKNIPDF-------NPD 435

Query: 203 DIETLISDIISNRTALKLIFFFFSY 227
           + E  +   ++ +  ++      SY
Sbjct: 436 EFEDEMDAFMAYQQIMRRSMHHMSY 460


>gi|303242233|ref|ZP_07328721.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
 gi|302590221|gb|EFL59981.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
          Length = 771

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 9   EHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPS 63
             +   +++S  + EQ  ++ +D  +   V   AGSGKT I + R+  L+     +  P 
Sbjct: 186 SDNRLKEIVSTIQVEQNKIIRADMWKPLIVQGAAGSGKTTIALHRIAYLVYTFEKSFEPE 245

Query: 64  TLLCL 68
             + +
Sbjct: 246 NFMII 250


>gi|238750414|ref|ZP_04611915.1| UvrD/REP helicase [Yersinia rohdei ATCC 43380]
 gi|238711345|gb|EEQ03562.1| UvrD/REP helicase [Yersinia rohdei ATCC 43380]
          Length = 664

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 37  SANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90
            A  GSGKT +LV ++  L +   +    +  L+HT AA  E+S ++       +
Sbjct: 47  EACPGSGKTTLLVAKLAVLAIRWPYRQQGICVLSHTNAARNEISAKLSNSTAGIA 101


>gi|257784165|ref|YP_003179382.1| Superfamily I DNA and RNA helicase-like protein [Atopobium parvulum
           DSM 20469]
 gi|257472672|gb|ACV50791.1| Superfamily I DNA and RNA helicase-like protein [Atopobium parvulum
           DSM 20469]
          Length = 736

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 9   EHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           +H+E +  I+ T  + + ++         +    AGSGKT +L+QR+  LL
Sbjct: 197 QHTEKLQAITATIQREQNVVVRHEDVPVLLVNGIAGSGKTSVLLQRIAYLL 247


>gi|221042590|dbj|BAH12972.1| unnamed protein product [Homo sapiens]
          Length = 567

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L +I  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|194764613|ref|XP_001964423.1| GF23169 [Drosophila ananassae]
 gi|190614695|gb|EDV30219.1| GF23169 [Drosophila ananassae]
          Length = 1473

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 810 TPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNIYHNHPNQRTLIVTHSNQALNQ 868

Query: 78  MSHRVLEI 85
           +  +++ +
Sbjct: 869 LFEKIMAL 876


>gi|119611725|gb|EAW91319.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59, isoform CRA_b [Homo
           sapiens]
          Length = 562

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L +I  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|117645912|emb|CAL38423.1| hypothetical protein [synthetic construct]
 gi|208967749|dbj|BAG72520.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [synthetic construct]
          Length = 619

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L +I  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|188035877|ref|NP_001026895.2| probable ATP-dependent RNA helicase DDX59 [Homo sapiens]
 gi|74762230|sp|Q5T1V6|DDX59_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX59; AltName:
           Full=DEAD box protein 59; AltName: Full=Zinc finger HIT
           domain-containing protein 5
 gi|55959939|emb|CAI17056.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sapiens]
          Length = 619

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L +I  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|27469538|gb|AAH41801.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sapiens]
          Length = 619

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L +I  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|12052748|emb|CAB66546.1| hypothetical protein [Homo sapiens]
 gi|55959938|emb|CAI17055.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sapiens]
 gi|119611724|gb|EAW91318.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59, isoform CRA_a [Homo
           sapiens]
          Length = 580

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L +I  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|33878506|gb|AAH14183.1| DDX59 protein [Homo sapiens]
          Length = 434

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIIKQSSV 342

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   +     + DE  +   +  ++     L +I  D    L  A            IE 
Sbjct: 343 ELCGV--KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIP-------TSIEQ 393

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 394 LASQLLHN 401


>gi|328790787|ref|XP_003251460.1| PREDICTED: probable helicase with zinc finger domain-like [Apis
           mellifera]
          Length = 917

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 19  QTKSEQLLASDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + K      + P +       +    G+GKT  + Q  LR LL  +    +L  TH+ +A
Sbjct: 434 EQKRALAAITAPDKISMPPVLLLGPFGTGKTFTIAQ-ALRYLLTKSSEYKILLCTHSNSA 492

Query: 75  A 75
           A
Sbjct: 493 A 493


>gi|322800122|gb|EFZ21228.1| hypothetical protein SINV_80088 [Solenopsis invicta]
          Length = 1309

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE-------------- 84
             G+GKT  + + +L+LL      S LL  T + ++A  ++ R+L+              
Sbjct: 779 PPGTGKTVTICETILQLLTT-IPESRLLVATPSNSSANLIAERLLDSNILKPGDMTNNEL 837

Query: 85  --IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
              I        +  + ++   Q +      +  AR L   I   PG  K  TI   CE 
Sbjct: 838 KPYINQIKKRKLKWFNKQLNYYQKEAVKNIILGLARPLPYVIFGPPGTGKTVTI---CET 894

Query: 143 IMQ 145
           I+Q
Sbjct: 895 ILQ 897


>gi|257069166|ref|YP_003155421.1| ATP-dependent helicase HrpA [Brachybacterium faecium DSM 4810]
 gi|256559984|gb|ACU85831.1| ATP-dependent helicase HrpA [Brachybacterium faecium DSM 4810]
          Length = 1297

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRL-------LLANAHPSTLL 66
           DL    + E + A+       V A A GSGKT  + + +L L       L+ +  P  + 
Sbjct: 25  DLPVSQRREDIQAAITEHQVVVIAGATGSGKTTQIPKMLLELGYGQGGKLIGHTQPRRIA 84

Query: 67  CLTHTKAAAAEMSHRVLE-IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             +  +  A EM  ++ E  +      + E       K+       +++ + R L
Sbjct: 85  ARSVAQRIAGEMGEKLGEGTVGYQVRFTRETSRGTRLKLMTDGILLAEIGRDRLL 139


>gi|217076667|ref|YP_002334383.1| DNA helicase, putative [Thermosipho africanus TCF52B]
 gi|217036520|gb|ACJ75042.1| DNA helicase, putative [Thermosipho africanus TCF52B]
          Length = 639

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 31  TRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE----- 84
           +++ ++     G+GKT  LV+ +L+ +        +L    +  A   +  R+ E     
Sbjct: 184 SKNFFLIHGPFGTGKTRTLVEYILQEVKRG---KKVLVSADSNMAVDNLVERLSEKVSHV 240

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            I   S +S ++LS+ +     K     ++ K +     ++E     +
Sbjct: 241 RIGHPSRVSKKLLSSTLLFKIEKHKRYKELYKLKEEFSNLIEKREKFQ 288


>gi|146284249|ref|YP_001174402.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
          A1501]
 gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM
          4166]
          Length = 609

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 12/77 (15%)

Query: 12 ETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS------ 63
          E       T  +Q    A    R   V+A  G+GKT      VL LL    HP       
Sbjct: 17 EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLELLFPGGHPDREHRYG 76

Query: 64 ----TLLCLTHTKAAAA 76
               +L LT T+  AA
Sbjct: 77 PKQPRVLVLTPTRELAA 93


>gi|66044511|ref|YP_234352.1| ATPas [Pseudomonas syringae pv. syringae B728a]
 gi|63255218|gb|AAY36314.1| ATPas [Pseudomonas syringae pv. syringae B728a]
          Length = 1564

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 41/187 (21%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA--------- 74
           Q ++  P  S  V   AG+GK+ +L      L         +L +     A         
Sbjct: 307 QRISRHPAGSTLVVGGAGTGKSALLADLYCTLKARGQI---VLAI----KADMLSPDILD 359

Query: 75  ----AAE--MSHRVLEIITAWSHLS------DEILSAEITKIQGKKPNKSDMSKARHLLI 122
               A +  MS  + + +   +  +      D++ +      Q  +  +  +  A  L  
Sbjct: 360 FDDLARDLGMSGNIEQELLLLAVEAPVVLIIDQLDAVSEVMDQSSQRMQVLLRLASRLQE 419

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE----EAKKSTLA 178
           +  +    L +         I+   P EA   + F + D ++   L+     E   + L 
Sbjct: 420 SKGQEDNKLPI-------HVIVSSRPFEAKFDARFRLLDADE--LLLSLPPFERISALLG 470

Query: 179 SIMLDNN 185
            + +D+ 
Sbjct: 471 ELGIDSK 477


>gi|326202228|ref|ZP_08192097.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
 gi|325987346|gb|EGD48173.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
          Length = 760

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLL---LANAH 61
               +   +++S  + EQ         +   V   AGSGKT I + R+  L+     +  
Sbjct: 184 ANAENRLKEIVSTIQEEQNKIVRAPMWKPLIVQGVAGSGKTTIALHRIAYLIYTFEKSFD 243

Query: 62  PSTLLCL 68
           P   + +
Sbjct: 244 PENFMII 250


>gi|195124453|ref|XP_002006707.1| GI18439 [Drosophila mojavensis]
 gi|193911775|gb|EDW10642.1| GI18439 [Drosophila mojavensis]
          Length = 1312

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 10  HSETIDLISQTKS--EQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           ++E I    + +   +Q+   D       +    G+GKT  + + + +L +     + +L
Sbjct: 612 YNENIGHNPEQQQAVQQITFCDKLPAPYIIIGPPGTGKTATICEAIYQLYVRRPD-THIL 670

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
            L  +  A  E++ R+L  I+     +  +          +  N  D+
Sbjct: 671 VLAGSNTACDEIALRLLRSISKVPSQARPLTRIFAASCDRRIDNIDDL 718


>gi|318061806|ref|ZP_07980527.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 723

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           D+++  + EQ  ++ SD + +  V    G+GKT + + RV  LL A+  
Sbjct: 214 DIVATIQPEQDGIVRSDLSGTVCVQGGPGTGKTAVGLHRVAYLLYAHRD 262


>gi|282853718|ref|ZP_06263055.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|282583171|gb|EFB88551.1| UvrD/REP helicase [Propionibacterium acnes J139]
          Length = 1085

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + +    R + +    S +L L  T+ +A
Sbjct: 28  MHGWDGLQARVLADDASTVLVMGGPGTGRTSLCLDIAARHVASGGRLSEVLVLAQTRPSA 87

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI--TILET 127
             +   ++  +         +    + +     P+K  ++      + R LL    I + 
Sbjct: 88  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLAARDISDW 147

Query: 128 PGGLK 132
           P  L+
Sbjct: 148 PEELR 152


>gi|261253246|ref|ZP_05945819.1| ATP-dependent helicase HrpA [Vibrio orientalis CIP 102891]
 gi|260936637|gb|EEX92626.1| ATP-dependent helicase HrpA [Vibrio orientalis CIP 102891]
          Length = 1314

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ K +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 84  EYPEIL-PVSQKKDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 142

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 143 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQVKLMTDGILLAEIQHDRFL 200


>gi|291614648|ref|YP_003524805.1| NERD domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291584760|gb|ADE12418.1| NERD domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 604

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 75/231 (32%), Gaps = 61/231 (26%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             + E L  S       V   AGSGKT IL  R  ++  A + P  +L L++    A  +
Sbjct: 232 DMQQELLARSMGEGHRIVRGVAGSGKTLILAFRAEQIARAASRP--VLLLSY----ANGI 285

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
           S R+   +         +                                      T H+
Sbjct: 286 SGRLENAMQDRGVEDKVVT------------------------------------STFHS 309

Query: 139 FCEAIMQQFPLEANIT-------SHFAIADEEQSKKLIEEAKKSTL-----ASIMLDNNE 186
           +C  +++ +     +          F+       + +++ A++  +      ++++D   
Sbjct: 310 WCWKMLRTY----GLPIATEKEIPDFSERQAANVQAVLDAAERGLIPGGQYDAVLIDEAH 365

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
           + +  +  +     + D + L   +I    A  +       +W++  IE +
Sbjct: 366 DFEPQWLALAAKMVNPDTKAL---MIVYDDAQAIYKGRKRPVWKQLGIEAA 413


>gi|254465842|ref|ZP_05079253.1| ATPase [Rhodobacterales bacterium Y4I]
 gi|206686750|gb|EDZ47232.1| ATPase [Rhodobacterales bacterium Y4I]
          Length = 512

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 51/206 (24%)

Query: 9   EHSETIDLISQTKSEQLLASD------PTRSAWVSA---NAGSGKTHILVQRVLRLLLAN 59
           + +   D +++   +  +  D      P   A V A    AGSGKT +L +    L  A 
Sbjct: 11  DQAAAYDSVTELLRQAGVDLDDGLLHPPRGDAGVMAVIGKAGSGKTLLLAELYKALEQAG 70

Query: 60  AHP--------------STLLCLTHTKAAAAEMSHR------VLEIITAWSHLSDEILSA 99
                             TL  L  T  AA+ +  R      +  I+    +  +    A
Sbjct: 71  VEIVSGDYESRKKGEDRRTLAILAPTNKAASVLRLRGVPATTIHRILYTPVYDPEFEKIA 130

Query: 100 EITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQTIHAFCEAI----------M 144
           E    QG++P+     +  +++A          PG L           +           
Sbjct: 131 EWLAGQGEQPDIEGLSEEALARAAAFYERNKSIPGALA-------AAGLRGSDFITGWKR 183

Query: 145 QQFPLEANITSHFAIADEEQSKKLIE 170
           ++ PL+       ++ D+ Q + L E
Sbjct: 184 REDPLDIGFIDEASMLDDRQFEDLKE 209


>gi|198425763|ref|XP_002120492.1| PREDICTED: similar to HELZ protein [Ciona intestinalis]
          Length = 2814

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 41  GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           G+GKT  + + + + +L N   + +L  TH+ +AA
Sbjct: 703 GTGKTFTMTKSI-QYILENVKDARILICTHSNSAA 736


>gi|254439307|ref|ZP_05052801.1| hypothetical protein OA307_4177 [Octadecabacter antarcticus 307]
 gi|198254753|gb|EDY79067.1| hypothetical protein OA307_4177 [Octadecabacter antarcticus 307]
          Length = 514

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 20/107 (18%)

Query: 30  PTRSAW-VSANAGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAA 75
           P RS   V   AGSGKT +L +    +  A                  TL  L  T  AA
Sbjct: 42  PLRSVLAVLGKAGSGKTLLLAELFRAMREAGVDIVSGDYEGKKRRDRRTLAILAPTNKAA 101

Query: 76  AEMSHR------VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           + + +R      +  I+    +  +    AE     G+KP    +++
Sbjct: 102 SVLRNRGVPATTIHRILYTPMYDPEYEKIAEWLAGNGEKPAIEGLTE 148


>gi|195172712|ref|XP_002027140.1| GL20085 [Drosophila persimilis]
 gi|194112953|gb|EDW34996.1| GL20085 [Drosophila persimilis]
          Length = 1303

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
              V    G+GKT  + + + +L +     S +L L+ +  A  E++ R+L  I      
Sbjct: 639 PYIVFGPPGTGKTATICEAIYQLYVYRPE-SHILVLSGSNTACDEIALRLLRAIAKAPET 697

Query: 93  SDEILSAEITKIQGKKPNK 111
               L+        ++ + 
Sbjct: 698 QPRPLTRIFAACCDRRIDN 716


>gi|163932204|ref|YP_001642336.1| methyltransferase/helicase protein [Pineapple mealybug
            wilt-associated virus 1]
 gi|162946386|gb|AAL66708.2|AF414119_1 methyltransferase/helicase protein [Pineapple mealybug
            wilt-associated virus 1]
          Length = 2076

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 13   TIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
             IDL+ +   E++  A D  +  +V+A  G+GKT+ + QR+LR   +    S LL LT +
Sbjct: 1742 LIDLLVKVSVEEVNKAIDNVK--FVNAVPGAGKTYQIKQRMLRWFDSEKDGSALLVLTSS 1799

Query: 72   KAAAAEMS 79
            + +A  + 
Sbjct: 1800 RNSADTLK 1807


>gi|121710124|ref|XP_001272678.1| NF-X1 finger and helicase domain protein, putative [Aspergillus
           clavatus NRRL 1]
 gi|119400828|gb|EAW11252.1| NF-X1 finger and helicase domain protein, putative [Aspergillus
           clavatus NRRL 1]
          Length = 1845

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-------ANAHPSTLLCLT 69
           + Q ++  L+ S   R   +    G+GK+   V  +  LL               +LC+T
Sbjct: 519 LDQAQAAALVHSLQHRIGLIQGPPGTGKSFTGVALIRVLLANRKKNHHEKTDIGPVLCVT 578

Query: 70  HTKAAAAEMSHRVLE-------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
           +T  A  ++   +++       I       SD++    + KI           +A++ L 
Sbjct: 579 YTNHALDQLLEALIDKDVTSQIIRIGSQSKSDQLQPLNLRKIAKDAEKTRREREAQYHLH 638

Query: 123 TILETPGG 130
             LE    
Sbjct: 639 RELEEYEK 646


>gi|85683235|gb|ABC73593.1| CG9425 [Drosophila miranda]
          Length = 367

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 17  ISQTKSEQLLASDPTRSA-----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           ++  + E + A     S       +    G+GKT+ L Q + +LL        +L  TH+
Sbjct: 267 LNAKQREAVNAITTALSIKLPPILLIGPFGTGKTYTLAQAIKQLLAQPEA--KILICTHS 324

Query: 72  KAAA 75
            +AA
Sbjct: 325 NSAA 328


>gi|318056809|ref|ZP_07975532.1| ATP-dependent helicase [Streptomyces sp. SA3_actG]
 gi|318076877|ref|ZP_07984209.1| ATP-dependent helicase [Streptomyces sp. SA3_actF]
          Length = 790

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ L+   P  S   V    G+GKT + + R   LL
Sbjct: 210 DIVASIQAEQDLVIRAPAASVTLVEGGPGTGKTAVALHRAAYLL 253


>gi|315090099|gb|EFT62075.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4]
          Length = 1061

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + +    R + +    S +L L  T+ +A
Sbjct: 4   MHGWDGLQARVLADDASTVLVMGGPGTGRTSLCLDIAARHVASGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI--TILET 127
             +   ++  +         +    + +     P+K  ++      + R LL    I + 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLAARDISDW 123

Query: 128 PGGLK 132
           P  L+
Sbjct: 124 PEELR 128


>gi|293192315|ref|ZP_06609426.1| DNA or RNA helicase, Superfamily I [Actinomyces odontolyticus
           F0309]
 gi|292820230|gb|EFF79224.1| DNA or RNA helicase, Superfamily I [Actinomyces odontolyticus
           F0309]
          Length = 758

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +++  S        D+++  +SEQ     +       V    G+GKT + + R+  LL
Sbjct: 166 LMHALSEARDGRMGDIVATIQSEQDRIIRASDKGLLVVQGGPGTGKTAVALHRIAYLL 223


>gi|255936813|ref|XP_002559433.1| Pc13g10110 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584053|emb|CAP92080.1| Pc13g10110 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1923

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-- 64
            Q+HS T+D     ++  L++    +   +    G+GK++  V  ++++LLAN   +   
Sbjct: 595 VQDHS-TLDG---AQARALISCLKRKLGLIQGPPGTGKSYTGVA-LIKVLLANKEATRGR 649

Query: 65  ---LLCLTHTKAA 74
              +LC+T+T  A
Sbjct: 650 LGPILCVTYTNHA 662


>gi|124008233|ref|ZP_01692930.1| DNA helicase Fdhp [Microscilla marina ATCC 23134]
 gi|123986332|gb|EAY26154.1| DNA helicase Fdhp [Microscilla marina ATCC 23134]
          Length = 579

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72
            +EQ        +  ++A AGSGKT  L   +     A AHP   +L L   +
Sbjct: 3  LTTEQAAIVGSQGNIKINAVAGSGKTSTL---IAY---AQAHPKEKILYLAFNR 50


>gi|198459416|ref|XP_002138690.1| GA24926 [Drosophila pseudoobscura pseudoobscura]
 gi|198136684|gb|EDY69248.1| GA24926 [Drosophila pseudoobscura pseudoobscura]
          Length = 1296

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 19  QTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           Q ++ + +A  P       V    G+GKT  + + + +L +     S +L L  +  A  
Sbjct: 623 QMQAVKQIALCPKLPAPYIVFGPPGTGKTATICEAIYQLYVYKPE-SHILVLAGSNTACD 681

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
           E++ R+L  I          L+        ++ + 
Sbjct: 682 EIALRLLRAIAKAPETQPRPLTRIFAACCDRRIDN 716


>gi|146329137|ref|YP_001209325.1| exonuclease V, alpha subunit [Dichelobacter nodosus VCS1703A]
 gi|146232607|gb|ABQ13585.1| exonuclease V, alpha subunit [Dichelobacter nodosus VCS1703A]
          Length = 524

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           +S  EH+   D ++  + + L      + + ++   G+GKT   V R++  LLA     T
Sbjct: 103 DSILEHNSFDDGLNAEQKQALKMGLTRQLSIINGGPGTGKTFT-VARIVAALLARDPDLT 161

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
           +     T  AA     R+   +      +      ++T  Q
Sbjct: 162 IALAAPTGKAA----QRLEIALHQAFITAQLTRPTQLTTAQ 198


>gi|118470029|ref|YP_885646.1| UvrD/Rep helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118171316|gb|ABK72212.1| UvrD/Rep helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 737

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           +  + + SD + +  +S  AG+GKT +   R  R L  N   + ++  T 
Sbjct: 259 EQRKYVESDFSGAFRLSGGAGTGKTVVATHR-ARRLARNNPDARIVLTTF 307


>gi|197116743|ref|YP_002137170.1| exodeoxyribonuclease V subunit alpha [Geobacter bemidjiensis Bem]
 gi|197086103|gb|ACH37374.1| exodeoxyribonuclease V, alpha subunit [Geobacter bemidjiensis Bem]
          Length = 599

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS------TLLCLTHT 71
           +  +    LA+   R   +S   G+GKT  +V+ VL LLL  A  +       +     T
Sbjct: 142 TDWQRVAALAAVTRRFCVISGGPGTGKTSTVVK-VLSLLLEQAEEAGTGAGLRIALAAPT 200

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103
             AAA    R+ E I+  +  ++E +   I +
Sbjct: 201 GKAAA----RLKESISDGARFAEEGVRGLIPE 228


>gi|308801257|ref|XP_003077942.1| F-box protein 18 (ISS) [Ostreococcus tauri]
 gi|116056393|emb|CAL52682.1| F-box protein 18 (ISS) [Ostreococcus tauri]
          Length = 1123

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 16/77 (20%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +S Q H+        T  ++ + S    P +   V A AGSGKT  LV+   R      H
Sbjct: 318 DSLQTHTRL------THEQEAIVSTTLKPPQWMVVHAFAGSGKTTTLVE-YAR-----RH 365

Query: 62  PS-TLLCLTHTKAAAAE 77
           PS   L L   +A   E
Sbjct: 366 PSIRFLYLAFNRAITEE 382


>gi|28493668|ref|NP_787829.1| type II/type IV pathway secretion protein [Tropheryma whipplei str.
           Twist]
 gi|28476710|gb|AAO44798.1| putative type II/type IV pathway secretion protein [Tropheryma
           whipplei str. Twist]
          Length = 353

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           NS   + +++D       + L      ++  ++  AG+GKT +L      LL        
Sbjct: 152 NSGFFNGKSMDYSDWLTRQVLE----RKNILITGAAGTGKTTLLS----ALLREVPENER 203

Query: 65  LLCL 68
           ++ +
Sbjct: 204 IIVI 207


>gi|307102593|gb|EFN50864.1| hypothetical protein CHLNCDRAFT_59413 [Chlorella variabilis]
          Length = 762

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHIL---VQRVLRLLLANAHPST-----LLCLT 69
           ++++   + AS            G+GKT  L   V+ ++R +   +         +L + 
Sbjct: 320 NESQVRAVAASLTRTFTLWQGPPGTGKTRTLLAFVEVMVRAV-EGSVVRRHAQGAILAVA 378

Query: 70  HTKAAAAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            T AAA  +   +L        +   + +  E+  A +  +    P+    ++ R     
Sbjct: 379 DTNAAADNLLDGLLARGIRAVRVGQPAKVRPELRHACLEALVQSTPSGQRAARLRAGADV 438

Query: 124 ILET 127
            L+ 
Sbjct: 439 FLQQ 442


>gi|302134624|ref|ZP_07260614.1| hypothetical protein PsyrptN_24737 [Pseudomonas syringae pv.
          tomato NCPPB 1108]
          Length = 305

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|227509852|ref|ZP_03939901.1| DNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190776|gb|EEI70843.1| DNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 764

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++    +   +V   AGSGKT  ++QRV  LL
Sbjct: 211 QKEQNQIIRDTSSELLFVQGAAGSGKTAAVLQRVAYLL 248


>gi|156839982|ref|XP_001643676.1| hypothetical protein Kpol_1057p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114297|gb|EDO15818.1| hypothetical protein Kpol_1057p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 679

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTL 65
           D +++++ + +  +     + +    G+GKT+ LV+ +L+L+          PS +
Sbjct: 209 DQLNESQKDAIKFALANDISIIHGPPGTGKTYTLVELILQLVEKGQRVLVCGPSNI 264


>gi|1388129|gb|AAC55658.1| helicase [Beet yellow stunt virus]
          Length = 710

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 22/111 (19%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           +D  R     A  G GKTH L+   +++   N     +L LT  K++  E+  ++ + + 
Sbjct: 308 NDSCRIRLYEAPPGGGKTHTLIASFVKMHKKN----RILVLTANKSSQVEILKKINDSLK 363

Query: 88  AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                  ++L       +   P+                      V TI +
Sbjct: 364 REHETKTKLLKFASKAERENYPSADS------------------NVYTIDS 396


>gi|239930432|ref|ZP_04687385.1| ATP/GTP-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438790|ref|ZP_06578180.1| ATP/GTP binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341685|gb|EFE68641.1| ATP/GTP binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 682

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D+ +  + EQ  L+  D  RS  V    G+GKT + + R   LL    HP  +
Sbjct: 182 DIAATLQPEQDDLVREDLDRSVCVQGAPGTGKTAVGLHRAAYLLY--THPQRV 232


>gi|19551964|ref|NP_599966.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389624|ref|YP_225026.1| DNA helicase [Corynebacterium glutamicum ATCC 13032]
 gi|41324959|emb|CAF19440.1| PUTATIVE DNA HELICASE [Corynebacterium glutamicum ATCC 13032]
          Length = 766

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPS------TLLCLTHTK 72
            AG+GKT ++V R  RL+ ++ H         +L  T+T+
Sbjct: 296 GAGTGKTVVVVHRANRLVTSDGHLETDDKTPRVLLTTYTR 335


>gi|66809511|ref|XP_638478.1| hypothetical protein DDB_G0284689 [Dictyostelium discoideum AX4]
 gi|60467073|gb|EAL65114.1| hypothetical protein DDB_G0284689 [Dictyostelium discoideum AX4]
          Length = 1679

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 20   TKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAA 74
            T S+QL+  +    R   V    G+GKTH L   VL  + +      P  +   + T  A
Sbjct: 1156 TTSQQLIFDSIIKKRMQLVRGPPGTGKTHFLALVVLIFMESFKRKEKPFRIAITSFTHNA 1215

Query: 75   AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
               +  R+  +   +S    + ++  + K Q  K           L   
Sbjct: 1216 IDNLLLRISALKKEYSISVGQDINFPLFKKQSSKLTDEFKDNDIKLFDK 1264


>gi|324518714|gb|ADY47182.1| DNA-binding protein SMUBP-2 [Ascaris suum]
          Length = 382

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 14  IDLISQTKSEQLLAS-DPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           I  ++  +   + A+ + +R    +    G+GKT ++++ +L+ +        +L    +
Sbjct: 228 IQKLNDDQQRAVAAALNRSRPIVTIQGPPGTGKTAVVIEIILQAIRTK---QKVLVCAPS 284

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             A   +  R+     A     D  +S E  +   +  + SD+ +    L   +   G  
Sbjct: 285 NLAIENIIGRIRGETEASRMSLDPSISME--EDLKQHNSYSDLLRLYEQLNESIRLTGDS 342

Query: 132 KVQ 134
            + 
Sbjct: 343 SIT 345


>gi|21323501|dbj|BAB98128.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
          ATCC 13032]
          Length = 521

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 39 NAGSGKTHILVQRVLRLLLANAHPS------TLLCLTHTK 72
           AG+GKT ++V R  RL+ ++ H         +L  T+T+
Sbjct: 51 GAGTGKTVVVVHRANRLVTSDGHLETDDKTPRVLLTTYTR 90


>gi|29830559|ref|NP_825193.1| ATP/GTP-binding protein [Streptomyces avermitilis MA-4680]
 gi|29607671|dbj|BAC71728.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 681

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D+ +  + EQ  L+ +D   S  V    G+GKT + + R   LL    HP  +
Sbjct: 184 DIAATIQPEQDDLVRADLATSVCVQGAPGTGKTAVGLHRAAYLLY--THPQRI 234


>gi|289648664|ref|ZP_06480007.1| putative DNA helicase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 692

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             QL+      +A VS +AG+GKT   + R + L   +   + +L  T ++  A  +   
Sbjct: 237 QRQLVDRIYNGAARVSGSAGTGKTVAALHRAVHLASKDED-ARVLLSTFSETLANALRGN 295

Query: 82  VLEIITAWSHLSDEILSAEITKIQGK-------KPNKSDMSKARHLLITILETPGGLK 132
           +  +I     L + I  A +  I  +       KP  +   +   LL        GLK
Sbjct: 296 LYRLIWNTPKLGERIDVAAMDAIGIRLYSAEFGKPALASREEISALLRDAASQVSGLK 353


>gi|297737213|emb|CBI26414.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 12  ETIDLISQTKSEQLLAS---DPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLC 67
           E ++  +   S++   +   +  R   +     G+GKT +L + +   +        +L 
Sbjct: 308 ELLESGAYDDSQRRAIALGLNKKRPILIIQGPPGTGKTVLLKELIALAVQQG---ERVLV 364

Query: 68  LTHTKAAAAEMSHRVLEI 85
              T AA   M  ++  I
Sbjct: 365 TAPTNAAVDNMVEKLSNI 382


>gi|302521496|ref|ZP_07273838.1| helicase [Streptomyces sp. SPB78]
 gi|302430391|gb|EFL02207.1| helicase [Streptomyces sp. SPB78]
          Length = 790

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ L+   P  S   V    G+GKT + + R   LL
Sbjct: 210 DIVASIQAEQDLVIRAPAASVTLVEGGPGTGKTAVALHRAAYLL 253


>gi|71981659|ref|NP_491374.2| hypothetical protein C41D11.7 [Caenorhabditis elegans]
 gi|38638833|gb|AAC48142.2| Hypothetical protein C41D11.7 [Caenorhabditis elegans]
          Length = 625

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 14/133 (10%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLA----SDPTRSAWVSANAGSGKTHILVQRVLRLLL 57
           I  NSF    +   +    + ++       ++  +   +    G+GKT  L   + RL+ 
Sbjct: 49  IELNSFDSMEKEAGIPFSNEKQRTAIKMALNENRKLVCIQGPPGTGKTFTLTLLLCRLIQ 108

Query: 58  ANAHPSTLLCLTHTKAAAAEMS-------HRVLEIITAWSHLSDEILSAEITKIQGKKPN 110
                  ++ L  T+ A A +         R+   +   + +        I K       
Sbjct: 109 QK---KQVVVLAPTREALANIRMMTKKTLKRMGIKVHEHALMDTNEYRDVINKSDRALMA 165

Query: 111 KSDMSKARHLLIT 123
             ++   R     
Sbjct: 166 AEEVRDLRKAFDN 178


>gi|115524179|ref|YP_781090.1| hypothetical protein RPE_2166 [Rhodopseudomonas palustris BisA53]
 gi|115518126|gb|ABJ06110.1| hypothetical protein RPE_2166 [Rhodopseudomonas palustris BisA53]
          Length = 573

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 66/198 (33%), Gaps = 48/198 (24%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           S     ET+  +++ + + L   D    A +   AGSGKT                   L
Sbjct: 205 SVDATVETLARLTRQQLQVLRGFDANPRAIIEGVAGSGKT-------------------L 245

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L +            RV      +S +     ++E+ K   +            +   ++
Sbjct: 246 LAM-----------QRVRSFAAQYSSVLLTCFNSELAKWMRE-----------EMAADLV 283

Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185
           E  G +K++  H     + +Q  +       F + +  +  +  +EA    LA   +D  
Sbjct: 284 ENGGRIKIENFHRLASDLCKQAHI------DF-VVNTAEPARWWDEAAPDLLAQAAMDLY 336

Query: 186 EELKKAFYEILEISNDED 203
            + +     +++ + D  
Sbjct: 337 PDGQPYAAIVVDEAQDFS 354


>gi|320331233|gb|EFW87184.1| hypothetical protein PsgRace4_04501 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 270

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|315604437|ref|ZP_07879503.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314143|gb|EFU62194.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 757

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ---LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +++  S        D+++  +SEQ   + ASD      V    G+GKT + + R+  LL
Sbjct: 166 LMHALSEARDGRMGDIVATIQSEQDRIIRASDRGL-LVVQGGPGTGKTAVALHRIAYLL 223


>gi|255280657|ref|ZP_05345212.1| ATP-dependent DNA helicase, UvrD/REP family [Bryantella
           formatexigens DSM 14469]
 gi|255268594|gb|EET61799.1| ATP-dependent DNA helicase, UvrD/REP family [Bryantella
           formatexigens DSM 14469]
          Length = 1179

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++I+  + EQ       P  +  V   AGSGKT + + R+  +L
Sbjct: 210 EIIATIQKEQNAIIRKSPKTNLIVQGVAGSGKTTVAMHRISYIL 253


>gi|320169131|gb|EFW46030.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1137

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 19  QTKSEQLLASDPTR--SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           Q ++ Q++ S P       +    G+GKT  LV+ + +++      +T+LC   + +AA 
Sbjct: 578 QLRAVQVVLSPPQALPPVVIFGPPGTGKTRTLVEAIAQVVKHPTLNATVLCAAPSNSAAN 637

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKI 104
            +  R+    +         +S  I ++
Sbjct: 638 LICERLATYFSPREMFRLNAVSRRIDEV 665


>gi|314983239|gb|EFT27331.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3]
          Length = 1058

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + +    R + +    S +L L  T+ +A
Sbjct: 1   MHGWDGLQARVLADDASTVLVMGGPGTGRTSLCLDIAARHVASGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI--TILET 127
             +   ++  +         +    + +     P+K  ++      + R LL    I + 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLAARDISDW 120

Query: 128 PGGLK 132
           P  L+
Sbjct: 121 PEELR 125


>gi|300785425|ref|YP_003765716.1| DNA helicase [Amycolatopsis mediterranei U32]
 gi|299794939|gb|ADJ45314.1| putative DNA helicase [Amycolatopsis mediterranei U32]
          Length = 499

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 22  SEQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
           SEQ  A D  R      + A AG+GKT  L            +      L   KA A E 
Sbjct: 8   SEQRAAVDAFRAGAHLVLQAGAGTGKTTTLTMLGASTRRRGRY------LAFNKAIATE- 60

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQT 135
           + R+     A +        A   + Q +   P  +    AR L IT+  T G  K+ T
Sbjct: 61  ARRLFGPNVACATAHSLAFKAVGHRYQDRLNHPRMATAKLARSLGITMEVTIGERKLTT 119


>gi|218960816|ref|YP_001740591.1| hypothetical protein CLOAM0486 [Candidatus Cloacamonas
          acidaminovorans]
 gi|167729473|emb|CAO80384.1| conserved hypothetical protein [Candidatus Cloacamonas
          acidaminovorans]
          Length = 646

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 36 VSANAGSGKTHILVQR--VLRLLLANAHPSTLLCLTHTKAAAAEMS 79
          + A  GSGKT  L+ +  +L   +       +  LTHT  A  E+ 
Sbjct: 43 IIACPGSGKTTALITKLYILSRFMPFTDNQGICVLTHTNVAMDEIK 88


>gi|148360852|ref|YP_001252059.1| hypothetical protein LPC_2812 [Legionella pneumophila str. Corby]
 gi|296106084|ref|YP_003617784.1| LvhB11 [Legionella pneumophila 2300/99 Alcoy]
 gi|148282625|gb|ABQ56713.1| LvhB11 [Legionella pneumophila str. Corby]
 gi|295647985|gb|ADG23832.1| LvhB11 [Legionella pneumophila 2300/99 Alcoy]
          Length = 321

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
             A    R+  V    GSGKT  LV  ++  ++ +A    +  +
Sbjct: 143 QQAVSNHRNILVIGGTGSGKT-TLVNAIIHEMVKSAPHERIFII 185


>gi|153816447|ref|ZP_01969115.1| hypothetical protein RUMTOR_02700 [Ruminococcus torques ATCC 27756]
 gi|317500199|ref|ZP_07958431.1| hypothetical protein HMPREF1026_00373 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087573|ref|ZP_08336503.1| hypothetical protein HMPREF1025_00086 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846235|gb|EDK23153.1| hypothetical protein RUMTOR_02700 [Ruminococcus torques ATCC 27756]
 gi|316898414|gb|EFV20453.1| hypothetical protein HMPREF1026_00373 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330400444|gb|EGG80077.1| hypothetical protein HMPREF1025_00086 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 692

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           K +  +  +      V   A GSGKT I + R+  LL     N   S +L L
Sbjct: 207 KEQNAIIRNTKDKILVIQGAAGSGKTSIALHRIAYLLYHDRKNLKSSNILIL 258


>gi|88810269|ref|ZP_01125526.1| Superfamily I DNA and RNA helicase-like protein [Nitrococcus
           mobilis Nb-231]
 gi|88791899|gb|EAR23009.1| Superfamily I DNA and RNA helicase-like protein [Nitrococcus
           mobilis Nb-231]
          Length = 850

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 27/176 (15%)

Query: 7   FQEHSETIDLISQTK--SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           F  +++  D +   +   ++ + +D    A V+  +GSGKT ++V+R + L         
Sbjct: 252 FARNADYKDWMLFMRPAQQRFVDADYAGPAKVTGVSGSGKTAVVVRRAIAL-TERYPDQQ 310

Query: 65  LLCLTHTK------------AAAAEMSHRV----LEIITAWSHLSDEILSAEITKIQGKK 108
           +L LT  +            AA  E+  R+      ++        E  +  +      K
Sbjct: 311 VLVLTLNRSLAVLIEELVNTAALEEVRDRIEVLPFFMLCQRFLYQFEPDNTRLYDDVTWK 370

Query: 109 PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
             +   +  R      L       +Q +H   ++++ +      I +   I +E  
Sbjct: 371 SREHIDAIWREYYRCELHNYDARALQKVH---DSLISR-----GIDAESYIREEFD 418


>gi|53712519|ref|YP_098511.1| hypothetical protein BF1227 [Bacteroides fragilis YCH46]
 gi|52215384|dbj|BAD47977.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 634

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 41  GSGKTHILVQRVLR---LLLANAHPSTLLCLTH 70
           GSGKT +L  R +     +  N   + +L LT 
Sbjct: 200 GSGKTTVLAARAVHAYKRISQNKPNAQILILTF 232


>gi|253573461|ref|ZP_04850804.1| ATP-dependent DNA helicase replicase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846989|gb|EES74994.1| ATP-dependent DNA helicase replicase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 781

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           S    ++   +++  + EQ  ++ +D +R   V   AGSGKT   +QRV  LL  +
Sbjct: 198 SRSSDAQMKSIVATIQREQNKIIRNDRSRMLIVQGAAGSGKTSAALQRVAYLLYKH 253


>gi|213160860|ref|ZP_03346570.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 448

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
           A    +L L   + AA EM  R+ E +      +    S  +  IQ        +SK
Sbjct: 3   ADAGQILLLAFGRKAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSK 59


>gi|198428001|ref|XP_002131605.1| PREDICTED: similar to aquarius [Ciona intestinalis]
          Length = 1440

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 1/116 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T++E + +        V    G+GKT + VQ ++  L  N      L +TH+  A  
Sbjct: 760 FTPTQTEAIRSGMQPGLTMVVGPPGTGKTDVAVQ-IISNLYHNFPEQRTLIVTHSNQALN 818

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           ++  +++++     HL       E  + +        ++      I +LE  G L+
Sbjct: 819 QLFEKIMQLDIDERHLLRLGHGEEQLETEKDFSRYGRVNFVLAKRIELLEEVGKLQ 874


>gi|312887215|ref|ZP_07746819.1| AAA ATPase [Mucilaginibacter paludis DSM 18603]
 gi|311300527|gb|EFQ77592.1| AAA ATPase [Mucilaginibacter paludis DSM 18603]
          Length = 636

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 13  TIDLISQTKSEQLLASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
            +  ++     Q  A +   SA     V    G+GKT  LVQ +  L+        LL +
Sbjct: 172 LLPKLTGLNPSQQAAVEKIVSAQDLAIVHGPPGTGKTTTLVQAIKSLISQGEK--QLLVV 229

Query: 69  THTKAAAAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +  A   +S ++         I   + +SD ++S  +     +     D+ K +    
Sbjct: 230 APSNTAVDLLSEKLAGEGLNVLRIGNPARVSDRLMSLTLDSKMAEHGRMKDIKKLKKQAA 289

Query: 123 TILETPGGLK 132
                    K
Sbjct: 290 EFKNMAHKYK 299


>gi|301769959|ref|XP_002920401.1| PREDICTED: LOW QUALITY PROTEIN: f-box only protein 18-like
           [Ailuropoda melanoleuca]
          Length = 1141

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ S       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 537 IQLTHEQQLILSHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSESRFLYVTFNK 590


>gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 450

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 29/228 (12%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPSTLLCLTHTKAA 74
           + + + A    R    SA  G+GKT      +L LL+          P   L LT T+  
Sbjct: 28  QQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELLVKNQPHAKGRRPVRALILTPTREL 87

Query: 75  AAEMSHRVLEI-----ITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETP 128
           AA++   V +      I +        ++ ++ K++ G     +   +   L        
Sbjct: 88  AAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147

Query: 129 GGLKVQTIH--------AFCEAIMQQFPLEANITSH-----FAIADEEQSKKLIEEAKKS 175
             +++  +          F   I +   + A +        F+    +  K L E+   +
Sbjct: 148 DNVEILVLDEADRMLDMGFIHDIRR---VLAKLPPRRQNLLFSATFSDDIKALAEKLLHN 204

Query: 176 TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFF 223
            L   +   N    +   + +   + +    L+S +I      +++ F
Sbjct: 205 PLEVEVARRNTA-SEQVTQHVHFVDKKRKRELLSHMIGQGNWQQVLVF 251


>gi|301757641|ref|XP_002914657.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like
           [Ailuropoda melanoleuca]
 gi|281351210|gb|EFB26794.1| hypothetical protein PANDA_002576 [Ailuropoda melanoleuca]
          Length = 620

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 28/187 (14%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  + R L  +  PS  L LT T+    E++   ++I +  
Sbjct: 241 GRDILASADTGSGKTAAFLLPVITRALCESKTPSA-LILTPTR----ELA---IQIESQA 292

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
             L   +   +   + G  P    + + R  +  I+ TPG L           I++Q  +
Sbjct: 293 KELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRL---------LDIIKQSSV 343

Query: 150 EANITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           E        + DE  +   +  ++     L ++  D    L  A            IE L
Sbjct: 344 ELR-GMKIVVVDEVDTMLKMGFQQQVLDILENVPNDCQTILASATIP-------TSIEQL 395

Query: 208 ISDIISN 214
            S ++ N
Sbjct: 396 ASQLLRN 402


>gi|213418426|ref|ZP_03351492.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
          Length = 56

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + T  +  + +       V A AGSGKT  L +R             +L + + +A
Sbjct: 4  TDTPEQAAVIAWKGERLVVCAFAGSGKTTTL-RRYA----EENPTERMLYIAYNRA 54


>gi|220915894|ref|YP_002491198.1| CRISPR-associated helicase Cas3 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953748|gb|ACL64132.1| CRISPR-associated helicase Cas3 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 887

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 10  HSETIDLISQTKSEQLLASDPTRS----AWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            +   D+ S   ++Q +   P         + A  GSGKT   V R  RL          
Sbjct: 260 FTRLFDVPSPRPAQQAVLDLPVAPEGGLTVLEAETGSGKTEAAVARFARLFADGLVNGMY 319

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L  T+ +A ++  R+++ +       +      +      + + ++  +   L
Sbjct: 320 FALP-TRTSATQIHRRLVDAMRRCFPDENSRPPVVLAVPGYLRVDDAEGKRDPRL 373


>gi|147867288|emb|CAN81193.1| hypothetical protein VITISV_022848 [Vitis vinifera]
          Length = 806

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 12  ETIDLISQTKSEQLLAS---DPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLC 67
           E ++  +   S++   +   +  R   +     G+GKT +L + +   +        +L 
Sbjct: 513 ELLESGAYDDSQRRAIALGLNKKRPILIIQGPPGTGKTVLLKELIALAVQQG---ERVLV 569

Query: 68  LTHTKAAAAEMSHRVLEI 85
              T AA   M  ++  I
Sbjct: 570 TAPTNAAVDNMVEKLSNI 587


>gi|111023749|ref|YP_706721.1| ATP-dependent helicase hrpA [Rhodococcus jostii RHA1]
 gi|110823279|gb|ABG98563.1| ATP-dependent helicase hrpA [Rhodococcus jostii RHA1]
          Length = 1296

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 12  ETIDLISQTKSEQLLASDPTRS-AWVSAN-AGSGKTHILVQRVLRL------LLANAHPS 63
           E  D +  ++    +A     +   + A   GSGKT  + +  L L      L+ +  P 
Sbjct: 64  EYPDSLPVSQRRDDIAKAIAENQVVIVAGETGSGKTTQIPKICLELGRGVRGLIGHTQPR 123

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            L   T  +  A E+   + E +      +D++    + K+       +++ + R L
Sbjct: 124 RLAARTVAERIAEELRSELGETVGYTVRFTDQVSDGTLVKLMTDGILLAEIQRDRML 180


>gi|86138961|ref|ZP_01057532.1| helicase, ATP-dependent, putative [Roseobacter sp. MED193]
 gi|85824192|gb|EAQ44396.1| helicase, ATP-dependent, putative [Roseobacter sp. MED193]
          Length = 512

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L +    L  A                  +L  L  T  AA+ +  R     
Sbjct: 51  AGSGKTLLLAELYKTLERAGVEVVSGDYESRKKTGRRSLAILAPTNKAASVLRLRGVPAT 110

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+    +  +    AE     G++P      +  +++A          PG L    
Sbjct: 111 TIHRILYTPVYDPEYERIAEWLAGNGEQPEIEGLTEEALARAAAFYEKNKSIPGALA--- 167

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           ++ PL+       ++ D+ Q + L E
Sbjct: 168 ----AAGLRGSDFITGWKRREDPLDIGFVDEASMLDDRQFEDLKE 208


>gi|238611420|ref|XP_002397967.1| hypothetical protein MPER_01514 [Moniliophthora perniciosa FA553]
 gi|215473525|gb|EEB98897.1| hypothetical protein MPER_01514 [Moniliophthora perniciosa FA553]
          Length = 360

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 19  QTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           Q ++   +   P  S    +    G+GKT  +V+ +L++L  ++  + +L  T + +AA
Sbjct: 251 QLQAIASVIDRPAGSAPFIIFGPPGTGKTVTMVESILQVLKKDSK-AKILVCTPSNSAA 308


>gi|293568959|ref|ZP_06680272.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|291588392|gb|EFF20227.1| conserved hypothetical protein [Enterococcus faecium E1071]
          Length = 580

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 17  ISQTKSEQL-----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           I +   +Q+     + S+P ++  ++ +AG+GKT +L   V + L   +   T+  +
Sbjct: 176 IKELTQQQMDLINEILSNPEKNFVINGDAGTGKTVLLTHLVAKFLDEQSD-KTIAVV 231


>gi|251796266|ref|YP_003010997.1| hypothetical protein Pjdr2_2255 [Paenibacillus sp. JDR-2]
 gi|247543892|gb|ACT00911.1| conserved hypothetical protein [Paenibacillus sp. JDR-2]
          Length = 772

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++ ++  R   V   AGSGKT   +QRV  LL
Sbjct: 212 QREQNQIIRNERARLLIVQGAAGSGKTSAALQRVAYLL 249


>gi|168067167|ref|XP_001785496.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662903|gb|EDQ49703.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1391

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI------ITA 88
            +    G+GKT   VQ +L LL  N      L +TH+  A  ++  ++++       +  
Sbjct: 834 MIVGPPGTGKTDTAVQ-ILHLLYHNCPMQRTLIITHSNQALNDLFEKIMQRDVPARYLLR 892

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
                 E+ +      QG+    + + +   LL  +      LKV
Sbjct: 893 LGQGEQELDTDHSFSRQGRV--NAMLKRRLDLLSEVERLAKTLKV 935


>gi|126651008|ref|ZP_01723219.1| Superfamily I DNA helicase [Bacillus sp. B14905]
 gi|126592209|gb|EAZ86258.1| Superfamily I DNA helicase [Bacillus sp. B14905]
          Length = 742

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 90/240 (37%), Gaps = 50/240 (20%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV---LRLLLANAHPSTLLCL------- 68
           Q +  +++ +   +   V   AGSGKT I + R+   L  +  + +P  L+ L       
Sbjct: 197 QKEQNEIIRAHLRQPIIVQGAAGSGKTTIALHRISYFLYTMGEHFNPEQLMILAPNKLFI 256

Query: 69  ------------------THTK--AAAAEMSHRVL---EIITAWSHLSDEILSAEITKIQ 105
                             T T    +A ++  ++    E + +     +   SA I +++
Sbjct: 257 DYIGDVLPELGVDKICQTTFTDYVLSATKLKLKLQNPNEQLESLVAGGNSQPSAWIAEMK 316

Query: 106 GKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164
           G    +  + +  R L   I E    + ++    +C  IM+   L+      F+    E+
Sbjct: 317 GSLYYRDVIERYIRKLEQDIAEQFEDVYIE---RYC--IMRASHLKKLFLYEFSYMPIEK 371

Query: 165 SKKLIEEA--------KKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
               I++         K+S LA++    +E L KA   I    +DE    +++  I  R 
Sbjct: 372 RLAHIKKVLASHVRQKKQSVLATLHKKYDEALGKALNGI---RDDEKRRRVVTKFIDERD 428


>gi|16763126|ref|NP_458743.1| DNA helicase [Salmonella enterica subsp. enterica serovar Typhi
          str. CT18]
 gi|29144606|ref|NP_807948.1| DNA helicase [Salmonella enterica subsp. enterica serovar Typhi
          str. Ty2]
 gi|213426695|ref|ZP_03359445.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213616419|ref|ZP_03372245.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
 gi|213647586|ref|ZP_03377639.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213854760|ref|ZP_03383000.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|224586164|ref|YP_002639963.1| DNA helicase [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|25514257|pir||AC1042 probable DNA helicase (EC 3.6.1.-) [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505434|emb|CAD06784.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29140245|gb|AAO71808.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|224470692|gb|ACN48522.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
          Length = 503

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          + T  +  + +       V A AGSGKT  L +R             +L + + +A
Sbjct: 4  TDTPEQAAVIAWKGERLVVCAFAGSGKTTTL-RRYA----EENPTERMLYIAYNRA 54


>gi|320588943|gb|EFX01411.1| nf-x1 finger and helicase domain containing protein [Grosmannia
           clavigera kw1407]
          Length = 2198

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKA 73
           + +T+S+ L  +     A +    G+GKT++ V+ ++++LL N   +    +LC+ +T  
Sbjct: 577 LDRTQSKALTQTLSRSMALIQGPPGTGKTYVGVE-IIKVLLGNKKSAKLGPILCVCYTNH 635

Query: 74  A 74
           A
Sbjct: 636 A 636


>gi|297827467|ref|XP_002881616.1| hypothetical protein ARALYDRAFT_482889 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327455|gb|EFH57875.1| hypothetical protein ARALYDRAFT_482889 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1512

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 15  DLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           + +  T ++        +     V    G+GKT   VQ +L +L  N      L +TH+ 
Sbjct: 862 NSVKFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSN 920

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            A  ++  +++E         D      +   QG++   +D+  +R 
Sbjct: 921 QALNDLFEKIMER--------DVPARYLLRLGQGEQELATDLDFSRQ 959


>gi|89893926|ref|YP_517413.1| hypothetical protein DSY1180 [Desulfitobacterium hafniense Y51]
 gi|219668300|ref|YP_002458735.1| ATP-dependent DNA helicase replicase [Desulfitobacterium hafniense
           DCB-2]
 gi|89333374|dbj|BAE82969.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538560|gb|ACL20299.1| ATP-dependent DNA helicase replicase [Desulfitobacterium hafniense
           DCB-2]
          Length = 753

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 9   EHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLLANAHPS-- 63
             S T+  I +T  K +  +  D +    +    AGSGKT I + R+  L+    +    
Sbjct: 204 NSSPTMRQIVETLQKEQDEIIRDRSNEVLIVQGVAGSGKTSIALHRIAYLMYEGFNSRLR 263

Query: 64  --TLLCL 68
              +L +
Sbjct: 264 SNNILII 270


>gi|310641441|ref|YP_003946199.1| ATP-dependent DNA helicase replicase [Paenibacillus polymyxa SC2]
 gi|309246391|gb|ADO55958.1| ATP-dependent DNA helicase replicase [Paenibacillus polymyxa SC2]
          Length = 784

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  +++  D +R   V   AGSGKT   +QRV  LL
Sbjct: 212 QKEQNRIIRDDRSRMLIVQGAAGSGKTSAALQRVAYLL 249


>gi|262370071|ref|ZP_06063398.1| superfamily I DNA and RNA helicase [Acinetobacter johnsonii
          SH046]
 gi|262315110|gb|EEY96150.1| superfamily I DNA and RNA helicase [Acinetobacter johnsonii
          SH046]
          Length = 500

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE-- 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A+E  
Sbjct: 12 EQAIAIDNARLGKSFKVIAYAGTGKTTTL-----QMISDAMPQRRGMYLAFNKAIASEAQ 66

Query: 78 MS 79
          M 
Sbjct: 67 MK 68


>gi|47229975|emb|CAG10389.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1467

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  
Sbjct: 807 FTPTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALN 865

Query: 77  EMSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           ++  +++ +     HL      +E L  E    +  + N   +++   LL  +      L
Sbjct: 866 QLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVN-YVLARRLELLREVGRLQESL 924

Query: 132 KV 133
            V
Sbjct: 925 DV 926


>gi|71667268|ref|XP_820585.1| PIF1 helicase-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70885935|gb|EAN98734.1| PIF1 helicase-like protein, putative [Trypanosoma cruzi]
          Length = 783

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 8   QEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           +  + + + +S T  +          R+ +++ +AG+GKT  L    L LL      +  
Sbjct: 218 ERVAPSKEGVSWTVEQVRAVQLVRTGRNVFLTGSAGTGKTAWL----LHLLRHVLSGTEG 273

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +  T    A   ++ R++  +T ++            KI  +  ++ ++ +A     T++
Sbjct: 274 VVAT----ATTGIAARIIGGLTIYAFSGIGRGDGSFEKIYRRVKSRPEVVRAWRQCKTLI 329


>gi|297592277|gb|ADI47015.1| putative superfamily I DNA and RNA helicase [Escherichia coli]
 gi|317447635|emb|CBJ52736.1| putative UvrD protein [Escherichia coli]
          Length = 502

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 8/47 (17%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRL 55
          ++ T  +  +         V+A AG+GKT  LVQ        R+L L
Sbjct: 3  LNPTDEQSAIIHWQGEKLVVNAFAGTGKTSTLVQFAAACPESRMLYL 49


>gi|297561626|ref|YP_003680600.1| Superfamily I DNA and RNA helicase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846074|gb|ADH68094.1| Superfamily I DNA and RNA helicase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 1048

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 15  DLISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68
           D++     +QL  +  D   +  V    G+GKT I + RV  LL   +  P  +L +
Sbjct: 192 DIVETIHRDQLDLVCHDRPGALVVQGGPGTGKTAIGLHRVTWLLDNDHFTPGQILVV 248


>gi|261337510|ref|ZP_05965394.1| DNA or RNA helicase, Superfamily 1 [Bifidobacterium gallicum DSM
           20093]
 gi|270277908|gb|EFA23762.1| DNA or RNA helicase, Superfamily 1 [Bifidobacterium gallicum DSM
           20093]
          Length = 764

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ     +D   +  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDAIIRADLQGAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|281347512|gb|EFB23096.1| hypothetical protein PANDA_009132 [Ailuropoda melanoleuca]
          Length = 1046

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ S       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 442 IQLTHEQQLILSHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSESRFLYVTFNK 495


>gi|157158381|ref|YP_001464360.1| hypothetical protein EcE24377A_3358 [Escherichia coli E24377A]
 gi|157080411|gb|ABV20119.1| conserved hypothetical protein [Escherichia coli E24377A]
          Length = 509

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 8/47 (17%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRL 55
          ++ T  +  +     +   V+A AG+GKT  LVQ        R+L L
Sbjct: 3  LTPTDEQSAIIHWQGQKLVVNAFAGTGKTSTLVQYALANPDSRILYL 49


>gi|307111011|gb|EFN59246.1| hypothetical protein CHLNCDRAFT_29663 [Chlorella variabilis]
          Length = 1505

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           +++ +++        V    G+GKT   VQ ++ +L  N      L +TH+  A  ++  
Sbjct: 865 QTQAIMSGVQPGLTMVVGPPGTGKTDTAVQ-IMHILYHNCPSQRTLVVTHSNQALNDLFS 923

Query: 81  RVLEI-ITAWSHLSDEILSAEITKIQGKK---PNKSDMSKARHLLITILETPGGLKVQ 134
           +++E  + A   L   +  AE+             + +++   LL  +      LKV 
Sbjct: 924 KIVERDVPARYLLRLGMGEAELETDLDFSRVGRVNAMLARRLELLAEVERLAKLLKVS 981


>gi|308068559|ref|YP_003870164.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305857838|gb|ADM69626.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 790

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S    ++   +++  + EQ      D +R   V   AGSGKT   +QRV  LL
Sbjct: 197 SRSSDAQMKSIVATIQREQNRIIRDDRSRMLIVQGAAGSGKTSAALQRVAYLL 249


>gi|281204972|gb|EFA79166.1| hypothetical protein PPL_07991 [Polysphondylium pallidum PN500]
          Length = 1587

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 35   WVSANAGSGKTH---ILVQRVLRLLLANAHPSTLLCLT-HTKAAAAEMSHRVLEIITAWS 90
             V    G+GKTH   ++V  ++  L+     S ++ +T HT  A   +  R+ E+   + 
Sbjct: 1070 LVVGPPGTGKTHFLALMVLIIMETLIRAEKKSYIIAITAHTHTAIDNLLVRIAELKKEYE 1129

Query: 91   HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +   L+ +I K +  K ++S  S               + +    + C  +       
Sbjct: 1130 SFAGNALNFQIVKKESSKLSESLTSHNIVKYDK-KHKFNLMCIG---STCWGL-----NT 1180

Query: 151  ANITSHFAIADEEQS 165
              +     I DE   
Sbjct: 1181 LGLDLDMLIIDEASQ 1195


>gi|281419921|ref|ZP_06250920.1| putative DEAD/DEAH box helicase [Prevotella copri DSM 18205]
 gi|281406048|gb|EFB36728.1| putative DEAD/DEAH box helicase [Prevotella copri DSM 18205]
          Length = 2132

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH---TKAAAAEMS 79
            Q  A D  +S  V+   GSGKT   +  ++  L  NA P+ +  L       A   +  
Sbjct: 99  RQRTADDKPKSVVVTTGTGSGKTECFMMPLIHDLSQNALPNEIQAL-FLYPLNALMEDQK 157

Query: 80  HRVLEIITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLITILETPGG 130
            R+ E++T     +   L+  +    +   +P  +D S     +   +E   G
Sbjct: 158 ERLEELLTVAESSTGTRLTYTVYNGDLPEMEPKNTDKSDDAEKMRRRIEHVTG 210


>gi|156549344|ref|XP_001601462.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 817

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 5   NSFQEHSETIDLISQTKSEQLLA-------SDPTRSAWVSANAGSGKTHILVQRVLRLLL 57
           N    +    + + ++  EQ  A       +       +    G+GKT  +V+ + ++  
Sbjct: 224 NKPSSNEYWFNKMIESNPEQKQAVLNIACKASYPAPYILYGPPGTGKTATVVEAICQVWQ 283

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVL 83
            N     +L  T + AAA  ++ R+L
Sbjct: 284 ENPS-EHILVCTPSNAAADVITKRLL 308


>gi|323970475|gb|EGB65735.1| hypothetical protein ERHG_03480 [Escherichia coli TA007]
          Length = 502

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 8/47 (17%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRL 55
          ++ T  +  +         V+A AG+GKT  LVQ        R+L L
Sbjct: 3  LNPTDEQSAIIHWQGEKLVVNAFAGTGKTSTLVQFAAACPESRMLYL 49


>gi|237708925|ref|ZP_04539406.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456987|gb|EEO62708.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 555

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTK 72
          T  + +   +P +   V A  G+GKTH L+  +  ++  +        + C+T+T 
Sbjct: 6  TSEQTVTIDEPFK---VCAGPGAGKTHWLINHIKNVVSNSHKLDVVKKVACITYTN 58


>gi|255571129|ref|XP_002526515.1| DNA replication helicase dna2, putative [Ricinus communis]
 gi|223534190|gb|EEF35906.1| DNA replication helicase dna2, putative [Ricinus communis]
          Length = 1018

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
            G+GKT  +V  V  LL+  A   ++L  ++T +A   +  ++   +     +   +   
Sbjct: 920 PGTGKTSTMVYAVKALLMRGA---SILLTSYTNSAVDNLLIKLKAQVYTAQEIVHLLQCC 976

Query: 100 EITKIQGKKPNKSDMSKARHLLI 122
              +++ +  N +  S+   L+ 
Sbjct: 977 RRGELRNRILNITAKSEKMSLIA 999


>gi|238581544|ref|XP_002389644.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
 gi|215452133|gb|EEB90574.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
          Length = 633

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 11  SETIDLISQTKSEQLLASD-----PTRSA--WVSANAGSGKTHILVQRVLRLLLANAHPS 63
           + T + +  T + Q+ A       P  S    +    G+GKT   V+ +L+LL AN + +
Sbjct: 443 NRTFNALIATNARQMQAVTSIIRMPPGSVPFVIFGPPGTGKTVTAVEAILQLLSANPN-A 501

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L    + +AA  ++ R+   +           S +  ++  +    +  +   H  + 
Sbjct: 502 RILACAPSNSAADLIAMRLRS-LGESGLFRAYAPSRDREQVPHELLPFTYQNATGHFSVP 560

Query: 124 ILETPGGLK--VQT 135
           +L      +  V T
Sbjct: 561 LLSRMKRFRAVVTT 574


>gi|156549342|ref|XP_001601402.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 668

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 18  SQTKSEQLLASDPTRSAWVSAN------AGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +  + +Q + +   +S +  A        G+GKT  LV+ + ++       + +L  T +
Sbjct: 219 NNARQKQAVVNMVDKSNFFPAPYILYGPPGTGKTATLVEAICQVGYKLNPSNRILVCTPS 278

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
             +A  ++ R+++ I          LS +   +    P
Sbjct: 279 NTSADVITKRLIKYIPKDKLHRMYSLSKDPLLLLHFPP 316


>gi|7492645|pir||T40239 probable helicase - fission yeast (Schizosaccharomyces pombe)
          Length = 829

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 20  TKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           T  ++++     +P     V A AG+GKT  L++       A + P   +L +     AA
Sbjct: 225 TSEQKMIVECQLNPGEVLKVKAFAGTGKTKALLE------FAKSRPKDKILYVAF-NKAA 277

Query: 76  AE 77
            E
Sbjct: 278 KE 279


>gi|284992209|ref|YP_003410763.1| hypothetical protein Gobs_3817 [Geodermatophilus obscurus DSM
           43160]
 gi|284065454|gb|ADB76392.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 765

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 61/220 (27%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCL----TH- 70
           Q + ++++ +D      V    G+GKT + + R   LL           LL +    T  
Sbjct: 186 QAEQDRIIRADDRGVLVVQGGPGTGKTAVALHRAAYLLYTHRERLARRGLLVVGPTPTFL 245

Query: 71  -------------------------------TK----AAAA---EMSHRVLEIITAWSHL 92
                                          T+    AA     EM   VLE   A   +
Sbjct: 246 RYIADVLPSLGETGVLLAGLGQLRPGLDARGTESPETAAVKGRLEMVE-VLERAVADRQV 304

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITI--LETPGGLKVQTIHAFCEAIM----QQ 146
             +            +    D+ +A++       L             F   ++    ++
Sbjct: 305 VPDAPREVTVDGFALRLRPIDVKRAQNAARRADRLHNLARPV------FARRVVDLLTRR 358

Query: 147 FPLEA--NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184
           +       I     + D E +  L  E  +     +++D+
Sbjct: 359 YAERIGLGIDGGSDLLDREDTAALRREVAEEPAVRLLVDD 398


>gi|28572861|ref|NP_789641.1| TadA-like protein [Tropheryma whipplei TW08/27]
 gi|28410994|emb|CAD67379.1| putative TadA-like protein [Tropheryma whipplei TW08/27]
          Length = 314

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           NS   + +++D       + L      ++  ++  AG+GKT +L      LL        
Sbjct: 113 NSGFFNGKSMDYSDWLTRQVLE----RKNILITGAAGTGKTTLLS----ALLREVPENER 164

Query: 65  LLCL 68
           ++ +
Sbjct: 165 IIVI 168


>gi|327441601|dbj|BAK17966.1| superfamily I DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 740

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV---LRLLLANAHPSTLLCL 68
           Q +  +++ +   +   V   AGSGKT I + R+   L  +  + +P  L+ L
Sbjct: 195 QKEQNEIIRAHLRQPILVQGAAGSGKTTIALHRISYFLYTMGEHFNPEQLMIL 247


>gi|331694845|ref|YP_004331084.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949534|gb|AEA23231.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 730

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 11  SETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAH 61
           S   D+++  ++EQ        S    +    G+GKT + + RV  LL ++  
Sbjct: 156 STMRDIVTTIQAEQDAIIRLPLSGVVVIEGGPGTGKTAVALHRVAYLLYSHRD 208


>gi|329115610|ref|ZP_08244332.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695038|gb|EGE46757.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 400

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 9/132 (6%)

Query: 6   SFQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +   H++   + + T  +Q    A    +   V A  G+GKT      + + LL +  P 
Sbjct: 13  ALCAHAQQAGMAAPTPVQQAAIPAILDGKDVLVRAPTGTGKTAAYALPLSQKLLKSRKPR 72

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L L  T          VL++   +    +E    +        P      +A      
Sbjct: 73  FVLVLVPT-------RELVLQVEKVFRTCLEESKKGQKQTAVTLVPLFGGSDRAEQEHFL 125

Query: 124 ILETPGGLKVQT 135
              T   + + T
Sbjct: 126 AQATGRRILIAT 137


>gi|302520013|ref|ZP_07272355.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
 gi|302428908|gb|EFL00724.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
          Length = 694

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           D+++  + EQ  ++ SD + +  V    G+GKT + + RV  LL A+  
Sbjct: 185 DIVATIQPEQDGIVRSDLSGTVCVQGGPGTGKTAVGLHRVAYLLYAHRD 233


>gi|162312261|ref|NP_596121.3| DNA helicase I [Schizosaccharomyces pombe 972h-]
 gi|74638875|sp|Q9USU3|FBH1_SCHPO RecName: Full=F-box DNA helicase protein 1
 gi|14269452|gb|AAK58077.1|AF380117_1 DNA helicase Fdhp [Schizosaccharomyces pombe]
 gi|14715439|emb|CAC44128.1| DNA helicase I [Schizosaccharomyces pombe]
          Length = 878

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 20  TKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75
           T  ++++     +P     V A AG+GKT  L++       A + P   +L +     AA
Sbjct: 274 TSEQKMIVECQLNPGEVLKVKAFAGTGKTKALLE------FAKSRPKDKILYVAF-NKAA 326

Query: 76  AE 77
            E
Sbjct: 327 KE 328


>gi|33865452|ref|NP_897011.1| exodeoxyribonuclease V, alpha subunit RecD [Synechococcus sp. WH
           8102]
 gi|33632621|emb|CAE07433.1| probable exodeoxyribonuclease V, alpha subunit RecD [Synechococcus
           sp. WH 8102]
          Length = 517

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLL 66
           QE  E    ++  +   +LA D      +S   G+GKT  +V+ + R   +  HP+  + 
Sbjct: 106 QEAPELPSTLNPEQQAAVLAMDGAAVVLLSGGPGTGKTSTVVELLRR--ASQRHPTLRIG 163

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
               T  AA     R+ + +    +   E+    + +      +     + R L + +L
Sbjct: 164 LAAPTGKAAR----RLGDAVRPGLN---ELPCFTLHRWLEAAGDGFRRHRQRPLELDLL 215


>gi|67920669|ref|ZP_00514189.1| UvrD/REP helicase [Crocosphaera watsonii WH 8501]
 gi|67858153|gb|EAM53392.1| UvrD/REP helicase [Crocosphaera watsonii WH 8501]
          Length = 715

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTK 72
             +L+  D      V   AG+GKT + + R   L     N     +   T T+
Sbjct: 251 QRRLVERDWNGPVRVLGGAGTGKTVVAIHRAKWLAQHCFNQENDRIFFTTFTR 303


>gi|330469495|ref|YP_004407238.1| hypothetical protein VAB18032_27826 [Verrucosispora maris
           AB-18-032]
 gi|328812466|gb|AEB46638.1| hypothetical protein VAB18032_27826 [Verrucosispora maris
           AB-18-032]
          Length = 704

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  A     S    VS   G+GKT + + R   LL
Sbjct: 177 DIVATIQREQDEAIRSPSSGVTLVSGGPGTGKTAVALHRAAYLL 220


>gi|238892813|ref|YP_002917547.1| hypothetical protein KP1_0623 [Klebsiella pneumoniae NTUH-K2044]
 gi|238545129|dbj|BAH61480.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
            pneumoniae NTUH-K2044]
          Length = 1651

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 31/186 (16%)

Query: 39   NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
              G+GKT +L    L  LL +A    +L ++ +  A  E+++RV E+       S +   
Sbjct: 1072 PPGTGKTTLLSA-TLDYLLNDADVRRVLVVSQSHTAVDEVANRVRELSFKRQEQSPDFKL 1130

Query: 99   AEITKIQGKK---------PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              I ++  ++            +  ++AR      LE                ++     
Sbjct: 1131 PSIVRLGERRRVSEGMLDVHTNALQAQARTAFHRDLEV--------------RLL-ALSA 1175

Query: 150  EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
               +   F +    +S  L     +            E+++   + +++ N  + E ++ 
Sbjct: 1176 RLKLPEAFVL----ESAALYRSCGRELFE--FTPARNEVREFQQDSVDMDNLPNNERIVR 1229

Query: 210  DIISNR 215
                 R
Sbjct: 1230 LAAERR 1235


>gi|292656941|ref|YP_003536838.1| UvrD/REP helicase domain-containing protein [Haloferax volcanii
           DS2]
 gi|291372676|gb|ADE04903.1| UvrD/REP helicase domain protein [Haloferax volcanii DS2]
          Length = 1174

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 63/201 (31%), Gaps = 36/201 (17%)

Query: 40  AGSGKTHILVQRVLRLLLA---NAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
            GSGK+          LL    +  P+    +  ++  +  AA           +     
Sbjct: 40  PGSGKSATATHIAAEDLLRRYVDGDPTPELHVAVVSFNRDEAA-----------SIVPAV 88

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
            E L   +        ++    + ++LL  +   P    + TI +    ++++   +   
Sbjct: 89  CERLRVIVEHELVPAASEVSEPELKYLLQRVRRAP---FIGTIDSLLRGVLREVVHDVGF 145

Query: 154 TSHFAIADEEQSKKLIEEAKKST------------LASIM--LDNNEELKKAFYEILEIS 199
            +  ++ +E   K++  E                 L +     D++  + +     L   
Sbjct: 146 ETMPSVGNEALLKRVHAECYDRISDDPACARRLERLEAAYPSGDHDAGVAEMLERALRYC 205

Query: 200 NDEDI--ETLISDIISNRTAL 218
            D  +  E    ++   R A+
Sbjct: 206 RDRRLTTEAFRVELERTRDAV 226


>gi|198457561|ref|XP_001360714.2| GA19992 [Drosophila pseudoobscura pseudoobscura]
 gi|198136020|gb|EAL25289.2| GA19992 [Drosophila pseudoobscura pseudoobscura]
          Length = 765

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 16  LISQT---KSEQLLAS-------DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           L+++T     EQL A        +P     V    G+GKT  +V+ +L++ L     S +
Sbjct: 264 LLNETIGYNEEQLEAVQTIVAGPNPKAPFIVFGPPGTGKTTTIVEAILQVRLRRPQ-SRI 322

Query: 66  LC 67
           L 
Sbjct: 323 LV 324


>gi|189466950|ref|ZP_03015735.1| hypothetical protein BACINT_03332 [Bacteroides intestinalis DSM
           17393]
 gi|189435214|gb|EDV04199.1| hypothetical protein BACINT_03332 [Bacteroides intestinalis DSM
           17393]
          Length = 690

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 6   SFQEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRL---LLANA 60
           S   + +  ++++  + EQ  +  +      +    AGSGKT I + R+  L   L  N 
Sbjct: 189 SSNANDKMRNIVTTIQREQNRIIRNEEAHILIIQGVAGSGKTSIALHRIAYLLYTLKGNI 248

Query: 61  HPSTLLCL 68
               +L +
Sbjct: 249 SSKDILII 256


>gi|189198704|ref|XP_001935689.1| DNA-binding protein SMUBP-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187982788|gb|EDU48276.1| DNA-binding protein SMUBP-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1954

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 17/106 (16%)

Query: 27   ASDPTRSAWVSANAGSGKTHILVQRVLRLL-----------------LANAHPSTLLCLT 69
            A D      +    G+GKT  +   V  +L                  ++  P  +L   
Sbjct: 1284 AIDNDGFTLIQGPPGTGKTRTITAIVGAILSGSFRNRGTNIAVPGKSQSDPTPKKILVCA 1343

Query: 70   HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
             + AA  E+  R+   I        +I    + +    + N  D++
Sbjct: 1344 PSNAAVDELCMRLRPGIKTLDGEVRQINIVRLGRSDAVEANLQDLT 1389


>gi|118467483|ref|YP_886528.1| superfamily protein I DNA or RNA helicase [Mycobacterium smegmatis
           str. MC2 155]
 gi|118168770|gb|ABK69666.1| superfamily protein I DNA or RNA helicase [Mycobacterium smegmatis
           str. MC2 155]
          Length = 736

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + +Q++  D T    +    G+GKT + + RV  LL
Sbjct: 180 QAEQDQVIRLDHTGVLVIEGGPGTGKTVVALHRVAYLL 217


>gi|118468634|ref|YP_890800.1| ATP-dependent helicase HrpA [Mycobacterium smegmatis str. MC2 155]
 gi|118169921|gb|ABK70817.1| ATP-dependent helicase HrpA [Mycobacterium smegmatis str. MC2 155]
          Length = 1316

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANA-GSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL    + + L  +       V A A GSGKT  L      + R +R  + +  P  L  
Sbjct: 69  DLPVTQRRDDLAKAIAENQVVVVAGATGSGKTTQLPKICLELGRGIRGTIGHTQPRRLAA 128

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E+   + E +      +D+   + + K+       +++ + R LL 
Sbjct: 129 RTVAQRIADELGTPLGEAVGYTVRFTDQASDSTLVKLMTDGILLAEIQRDRRLLR 183


>gi|119508905|ref|ZP_01628057.1| putative DNA helicase [Nodularia spumigena CCY9414]
 gi|119466434|gb|EAW47319.1| putative DNA helicase [Nodularia spumigena CCY9414]
          Length = 711

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTK 72
             +L+  D   +  V   AG+GKT + + R   L     N     +L  T T+
Sbjct: 253 QRKLVERDWNGAVRVLGGAGTGKTVVAMHRAKWLAQNRFNHPSDRILFTTFTR 305


>gi|17510559|ref|NP_490891.1| hypothetical protein Y71G12B.8 [Caenorhabditis elegans]
          Length = 763

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 28/184 (15%)

Query: 18  SQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTK 72
             T  +Q     +   +     A  G+GKT   V  +L  ++     A  + +L L  T+
Sbjct: 170 DPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTR 229

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
               E++ +V ++    S      +  E+    G    K+  +  R     ++ TPG L 
Sbjct: 230 ----ELAIQVFQVFRKLSTF----IQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRL- 280

Query: 133 VQTIH---AFCEAIMQQFPLEANITS-----------HFAIADEEQSKKLIEEAKKSTLA 178
           +  +H   +F  + ++ F    NI             +F +   +++ +++EEA +  + 
Sbjct: 281 IDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMN 340

Query: 179 SIML 182
            ++ 
Sbjct: 341 ELIR 344


>gi|256826472|ref|YP_003150431.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
 gi|256582615|gb|ACU93749.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
          Length = 706

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 9   EHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLLANAH---P 62
            HSE +  I+ T  K +  +         +    AGSGKT +L+QR+  L         P
Sbjct: 197 NHSEKLKAITATIQKEQNEVVRHDDVPVLLVNGIAGSGKTSVLLQRIAFLFYQKRDTLRP 256

Query: 63  STLLCLT 69
             +  LT
Sbjct: 257 DQVCLLT 263


>gi|157123112|ref|XP_001660013.1| DNA-binding protein smubp-2 [Aedes aegypti]
 gi|108874506|gb|EAT38731.1| DNA-binding protein smubp-2 [Aedes aegypti]
          Length = 463

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 21 KSEQLLA-------SDPTRSAWVSANAGSGKTHILVQRV--LRLLLANAHPSTLLCLTHT 71
           +EQ++A       +       +    G+GKT  LV+ +  +  L        +L    +
Sbjct: 26 NAEQVVAIRNIVNQTSFPAPYILFGPPGTGKTSTLVEAIGQIYKLRPTV---NILVAATS 82

Query: 72 KAAAAEMSHRVLEII 86
            AA E++ R+L+ I
Sbjct: 83 NYAANELTSRLLDCI 97


>gi|9635396|ref|NP_059294.1| ORF146 [Xestia c-nigrum granulovirus]
 gi|6175790|gb|AAF05260.1|AF162221_146 ORF146 [Xestia c-nigrum granulovirus]
          Length = 455

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 14 IDLISQTKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
          ++  ++   +Q    D           +VS +AG+GK+ +L       +        +  
Sbjct: 20 LNAPTKLNEQQQQIFDYVTQRDSFEPIFVSGSAGTGKSALLKSLRTHWIDRKKV---VWV 76

Query: 68 LTHTKAAAAEM 78
          ++ T  AA  +
Sbjct: 77 VSFTNLAARNI 87


>gi|71407679|ref|XP_806293.1| DNA repair and recombination helicase protein PIF1 [Trypanosoma
           cruzi strain CL Brener]
 gi|70869993|gb|EAN84442.1| DNA repair and recombination helicase protein PIF1, putative
           [Trypanosoma cruzi]
          Length = 527

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 8   QEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           +  + + + +S T  +          R+ +++ +AG+GKT  L    L LL      +  
Sbjct: 218 ERVAPSKEGVSWTVEQVRAVQLVRTGRNVFLTGSAGTGKTAWL----LHLLQHVLSGTEG 273

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +  T    A   ++ R++  +T ++            KI  +  ++ ++ +A     T++
Sbjct: 274 VVAT----ATTGIAARIIGGLTIYAFSGIGRGDGSFDKIYRRVKSRPEVVRAWRQCKTLI 329


>gi|294678756|ref|YP_003579371.1| AAA family ATPase [Rhodobacter capsulatus SB 1003]
 gi|294477576|gb|ADE86964.1| ATPase, AAA family [Rhodobacter capsulatus SB 1003]
          Length = 513

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 20/111 (18%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L +    L  A                  TL  L  T  AA+ +  R     
Sbjct: 52  AGSGKTLLLAELYKALEAAGVELVSGDWEGKRRKDRRTLAILAPTNKAASVLRSRGVPAT 111

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            +  I+    +  +    AE    QG++PN  D+ +   L    L+     
Sbjct: 112 TIHRILYTPVYHPEYEAIAEWLAGQGERPN-LDLLRIEGLTDLALDRAKAF 161


>gi|30687628|ref|NP_850297.1| EMB2765 (EMBRYO DEFECTIVE 2765) [Arabidopsis thaliana]
 gi|20466796|gb|AAM20715.1| unknown protein [Arabidopsis thaliana]
 gi|330254488|gb|AEC09582.1| intron-binding protein aquarius [Arabidopsis thaliana]
          Length = 1509

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 15  DLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           + +  T ++        +     V    G+GKT   VQ +L +L  N      L +TH+ 
Sbjct: 862 NSVKFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSN 920

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            A  ++  +++E         D      +   QG++   +D+  +R 
Sbjct: 921 QALNDLFEKIMER--------DVPARYLLRLGQGEQELATDLDFSRQ 959


>gi|330960670|gb|EGH60930.1| hypothetical protein PMA4326_19193 [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 452

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|318080633|ref|ZP_07987965.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actF]
          Length = 694

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           D+++  + EQ  ++ SD + +  V    G+GKT + + RV  LL A+  
Sbjct: 185 DIVATIQPEQDGIVRSDLSGTVCVQGGPGTGKTAVGLHRVAYLLYAHRD 233


>gi|119191656|ref|XP_001246434.1| hypothetical protein CIMG_00205 [Coccidioides immitis RS]
          Length = 708

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 6   SFQEHSETID-LISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           S     + ID  ++ ++ E +  A      A +    G+GKTH L++ +L+LL  N    
Sbjct: 240 SSASSLDFIDPSLNDSQKEAIRFALASREIALIHGPPGTGKTHTLIELILQLLRRNL--- 296

Query: 64  TLLC 67
            +L 
Sbjct: 297 RILV 300


>gi|330891806|gb|EGH24467.1| hypothetical protein PSYMO_24633 [Pseudomonas syringae pv. mori
          str. 301020]
          Length = 464

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|254884852|ref|ZP_05257562.1| predicted protein [Bacteroides sp. 4_3_47FAA]
 gi|254837645|gb|EET17954.1| predicted protein [Bacteroides sp. 4_3_47FAA]
          Length = 434

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
               +++  D  ++  V   AGSGKT++ + R L+     ++   +L +
Sbjct: 12 DDSQRKIIVEDIDKNIVVQGAAGSGKTNLAIHRALQAKNRGSYALVILTV 61


>gi|291457544|ref|ZP_06596934.1| ATP-dependent helicase HrpA [Bifidobacterium breve DSM 20213]
 gi|291380597|gb|EFE88115.1| ATP-dependent helicase HrpA [Bifidobacterium breve DSM 20213]
          Length = 1378

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-------LLANAHPSTLLCLT 69
           +S  + E   A   ++   VS   GSGKT  L + +L L        + +  P  +   T
Sbjct: 11  VSAARDEIADAVRRSQVVIVSGQTGSGKTTQLPKILLELGRGTHGKQIVHTQPRRIAART 70

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             +  A+EM  R+ + +      +DE       ++       + + +   L
Sbjct: 71  VAERIASEMGVRLGDEVGYQVRFTDESSPNTRLRVVTDGILLAQIQRDPKL 121


>gi|124027848|ref|YP_001013168.1| ATP dependent helicase [Hyperthermus butylicus DSM 5456]
 gi|123978542|gb|ABM80823.1| ATP dependent helicase [Hyperthermus butylicus DSM 5456]
          Length = 959

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 19  QTKSEQLLASDP---TRSAWVSANAGSGKT-HILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +    Q  A  P     + ++ A  G GKT   L+  + R+L     P  LL +T  +A 
Sbjct: 36  ELTEIQEKAIKPILEGHNVFIVAPTGYGKTEAALLPILSRMLEERVEPVALLYITPLRAL 95

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
             ++  R+    + +  +        + +  G  P+     + RH    ++ TP  L++
Sbjct: 96  INDIYERISWWASRFGFI--------VARKHGDVPHSERTRRLRHAPHILVTTPESLEI 146


>gi|294791089|ref|ZP_06756247.1| putative DNA or RNA helicase, Superfamily I [Scardovia inopinata
           F0304]
 gi|294458986|gb|EFG27339.1| putative DNA or RNA helicase, Superfamily I [Scardovia inopinata
           F0304]
          Length = 775

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ  ++ SD  ++  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDKIIRSDLAKAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|282866688|ref|ZP_06275729.1| hypothetical protein SACTEDRAFT_6274 [Streptomyces sp. ACTE]
 gi|282558474|gb|EFB64035.1| hypothetical protein SACTEDRAFT_6274 [Streptomyces sp. ACTE]
          Length = 1390

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           T DL+SQ +  +   S   R+  V A  GSGK+  ++    + + A      +L  T T 
Sbjct: 660 TRDLLSQLEDPRRPGSWR-RTGLVMAPVGSGKSTSVIALAAKAVDAGYGTVVILAGT-TN 717

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114
           AA  +M  RV E +  +                G  P+   +
Sbjct: 718 AARDQMQQRVDEGLLGFDSQYAASSETGGRIGAGAMPHARAL 759


>gi|328943787|ref|ZP_08241252.1| superfamily I DNA/RNA helicase [Atopobium vaginae DSM 15829]
 gi|327491756|gb|EGF23530.1| superfamily I DNA/RNA helicase [Atopobium vaginae DSM 15829]
          Length = 763

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 7   FQEHSETIDLISQT-KSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAH 61
            + HSE +  I+ T + EQ          +  +   AGSGKT +L+QR+  LL     
Sbjct: 244 ARRHSEKLQAITATIQREQNKIIRYKDVEALLIDGIAGSGKTSVLLQRIAYLLYQQKD 301


>gi|210622218|ref|ZP_03293008.1| hypothetical protein CLOHIR_00954 [Clostridium hiranonis DSM 13275]
 gi|210154352|gb|EEA85358.1| hypothetical protein CLOHIR_00954 [Clostridium hiranonis DSM 13275]
          Length = 591

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 28/138 (20%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           S ++    +D   ++ + +L    P     ++   GSGKT IL+ R + LL  +     +
Sbjct: 200 SIEKIMAALDYEQESFARRL----PYGHYLLTGVPGSGKTVILIARAIHLLKEHPD-WNI 254

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
             LT+ K+    +   +   ++  +   D + +  I                       L
Sbjct: 255 RILTYNKS----LQENIEATLSDMAEKFDNLYNEGI-------------------FENRL 291

Query: 126 ETPGGLKVQTIHAFCEAI 143
           +  G + V T H     +
Sbjct: 292 DIKGQITVTTYHKLAMDV 309


>gi|195150769|ref|XP_002016323.1| GL11520 [Drosophila persimilis]
 gi|194110170|gb|EDW32213.1| GL11520 [Drosophila persimilis]
          Length = 765

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 16  LISQT---KSEQLLAS-------DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           L+++T     EQL A        +P     V    G+GKT  +V+ +L++ L     S +
Sbjct: 264 LLNETIGYNEEQLEAVQTIVAGPNPKAPFIVFGPPGTGKTTTIVEAILQVRLRRPQ-SRI 322

Query: 66  LC 67
           L 
Sbjct: 323 LV 324


>gi|146161285|ref|XP_977099.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|146146797|gb|EAR86377.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 440

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 86/207 (41%), Gaps = 23/207 (11%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVLRLLLANAHPSTL 65
           Q+  + +   + TK ++L      R   V ANA  GSGKT      +L+ L     P  +
Sbjct: 14  QKTCDKVGYQNPTKIQELAIPPLLRKQHVIANAETGSGKTATFAFPILQDLAK--DPFGV 71

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
             +  T  A  E++ ++ E  T +       L+  ++ + G       +S+   +   ++
Sbjct: 72  FAIVLT--ANRELAMQISEQFTIFGS----SLNLRVSTLVGGVDFNKQLSELERIPHIVV 125

Query: 126 ETPGGLKVQTIHAFCEA-IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-- 182
            TPG     T+    ++ +++++         + + DE    +L E++    + SI+   
Sbjct: 126 GTPGR----TLDMIDKSPVLKEYIENV----KYLVLDEAD--RLFEDSIIEDIQSILEFI 175

Query: 183 DNNEELKKAFYEILEISNDEDIETLIS 209
              +++  A   I +  ND+ +  ++ 
Sbjct: 176 PQEKQIILATATINDDFNDKKLNEILK 202


>gi|28868099|ref|NP_790718.1| hypothetical protein PSPTO_0879 [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|28851335|gb|AAO54413.1| conserved protein of unknown function [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|331018779|gb|EGH98835.1| hypothetical protein PLA106_22308 [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 485

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 549

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTL--LCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL     A    +  L LT 
Sbjct: 22  DTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKVGQIRALVLTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      + G  P    + K RH +  ++ TPG 
Sbjct: 82  TR----ELAAQVSESVETYG----KYLPLRSAVVFGGVPINPQIQKLRHGVDVLVATPGR 133

Query: 131 L 131
           L
Sbjct: 134 L 134


>gi|300711188|ref|YP_003737002.1| DNA replication factor Dna2 [Halalkalicoccus jeotgali B3]
 gi|299124871|gb|ADJ15210.1| DNA replication factor Dna2 [Halalkalicoccus jeotgali B3]
          Length = 903

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 18/199 (9%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++  S  + A D    A +    G+GKT+ + + +  ++        +L    T  A   
Sbjct: 522 NEAVSRAIAAKD---FALIHGPPGTGKTYTIARAIRTMVERG---ERVLLSAFTNRAVDN 575

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                LE ++     +   +  E    +  +P + D       L + L     +   T  
Sbjct: 576 ----ALEALSDQGFTNFVRVGTEHGVREDMQPYRLDGRGEPGTLASTLREAPVVAATT-- 629

Query: 138 AFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY-EI 195
           + C   ++++   +  +    +   E  +   I  A++  L    + ++ +L      E 
Sbjct: 630 SSCGSRVLREQSFDVALVDEASQLTEPATLAAINRAERFVL----VGDHHQLPPVVQSEA 685

Query: 196 LEISNDEDIETLISDIISN 214
            E + D     L   +   
Sbjct: 686 DESTGDAKGADLSRSLFER 704


>gi|303313437|ref|XP_003066730.1| hypothetical protein CPC735_059550 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106392|gb|EER24585.1| hypothetical protein CPC735_059550 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 738

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 6   SFQEHSETID-LISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           S     + ID  ++ ++ E +  A      A +    G+GKTH L++ +L+LL  N    
Sbjct: 240 SSASSLDFIDPSLNDSQKEAIRFALASREIALIHGPPGTGKTHTLIELILQLLRRNL--- 296

Query: 64  TLLC 67
            +L 
Sbjct: 297 RILV 300


>gi|110834526|ref|YP_693385.1| hypothetical protein ABO_1665 [Alcanivorax borkumensis SK2]
 gi|110647637|emb|CAL17113.1| hypothetical protein ABO_1665 [Alcanivorax borkumensis SK2]
          Length = 631

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           S+    + + ++   + EQL  S       +   AGSGKT IL  R L L  A   P  +
Sbjct: 247 SYNTIPDIVRVM-DLQQEQLARSMGDGHRVIHGVAGSGKTLILGYRCLHLAQAVTKP--I 303

Query: 66  LCLTH--TKAA 74
           L L    T AA
Sbjct: 304 LVLCFNITLAA 314


>gi|167516626|ref|XP_001742654.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779278|gb|EDQ92892.1| predicted protein [Monosiga brevicollis MX1]
          Length = 3072

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTK 72
           L   ++ E L      R   V    G+GKT++ VQ V  +L A         +LCL +T 
Sbjct: 823 LADASQQEALHHLTNQRVVLVQGPPGTGKTYVGVQMVRAMLQAAKEQKYKIKILCLCYTN 882

Query: 73  AA 74
            A
Sbjct: 883 HA 884


>gi|156974783|ref|YP_001445690.1| ATP-dependent RNA helicase HrpA [Vibrio harveyi ATCC BAA-1116]
 gi|156526377|gb|ABU71463.1| hypothetical protein VIBHAR_02501 [Vibrio harveyi ATCC BAA-1116]
          Length = 1345

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 120 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 178

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 179 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 236


>gi|153831958|ref|ZP_01984625.1| ATP-dependent helicase HrpA [Vibrio harveyi HY01]
 gi|148871956|gb|EDL70779.1| ATP-dependent helicase HrpA [Vibrio harveyi HY01]
          Length = 1338

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 113 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 171

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 172 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 229


>gi|320036315|gb|EFW18254.1| DNA helicase [Coccidioides posadasii str. Silveira]
          Length = 738

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 6   SFQEHSETID-LISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           S     + ID  ++ ++ E +  A      A +    G+GKTH L++ +L+LL  N    
Sbjct: 240 SSASSLDFIDPSLNDSQKEAIRFALASREIALIHGPPGTGKTHTLIELILQLLRRNL--- 296

Query: 64  TLLC 67
            +L 
Sbjct: 297 RILV 300


>gi|157964606|ref|YP_001499430.1| conjugal transfer protein TraA [Rickettsia massiliae MTU5]
 gi|157844382|gb|ABV84883.1| Conjugal transfer protein TraA [Rickettsia massiliae MTU5]
          Length = 1378

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLL----ASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           I+ N+  +    ID ++     Q          ++   +    AG+GK+ +L +     +
Sbjct: 326 IHFNNVVKLKSAIDNLASVNEAQRESLQHILINSQGIRILQGRAGTGKSQVLAE--AYKI 383

Query: 57  LANAHPSTLLCLTHTKAAAAEMSHR 81
             N H   ++ L  T  AA+E+  +
Sbjct: 384 ATN-HGQNIIGLAPTHKAASELKSK 407


>gi|158313327|ref|YP_001505835.1| hypothetical protein Franean1_1489 [Frankia sp. EAN1pec]
 gi|158108732|gb|ABW10929.1| conserved hypothetical protein [Frankia sp. EAN1pec]
          Length = 1018

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
             A        V    G+GKT  +V+ V  L+        +L  +HT  A
Sbjct: 339 RRALAVPDVLLVLGPPGTGKTTTIVEIVTALVALG---QRVLVTSHTNRA 385


>gi|328884174|emb|CCA57413.1| ATP-dependent DNA helicase rep [Streptomyces venezuelae ATCC 10712]
          Length = 675

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  ++ SD + +  V    G+GKT + + RV  LL
Sbjct: 169 DIVATIQPEQDGIVRSDLSGTVCVQGGPGTGKTAVGLHRVAYLL 212


>gi|288560413|ref|YP_003423899.1| helicase RecD/TraA family [Methanobrevibacter ruminantium M1]
 gi|288543123|gb|ADC47007.1| helicase RecD/TraA family [Methanobrevibacter ruminantium M1]
          Length = 611

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 17 ISQTKSEQLLASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
          ++ T  +Q +A D  R      ++   AGSGKTH L+  ++ LL        +LC T
Sbjct: 1  MTLTAEQQRIADDMCRELAPITFIQGKAGSGKTH-LINELINLL----EIDEILCPT 52


>gi|239981937|ref|ZP_04704461.1| ATP-dependent helicase [Streptomyces albus J1074]
 gi|291453791|ref|ZP_06593181.1| helicase [Streptomyces albus J1074]
 gi|291356740|gb|EFE83642.1| helicase [Streptomyces albus J1074]
          Length = 795

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 8   QEHSETI-DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           Q  S T+ D+++  ++EQ  +   P  S   V    G+GKT + + R   LL
Sbjct: 202 QARSHTMRDIVASIQAEQDRVIRAPAASVTLVEGGPGTGKTAVALHRAAYLL 253


>gi|212690631|ref|ZP_03298759.1| hypothetical protein BACDOR_00118 [Bacteroides dorei DSM 17855]
 gi|265754305|ref|ZP_06089494.1| type I restriction-modification system restriction subunit
           [Bacteroides sp. 3_1_33FAA]
 gi|212666731|gb|EEB27303.1| hypothetical protein BACDOR_00118 [Bacteroides dorei DSM 17855]
 gi|263235014|gb|EEZ20569.1| type I restriction-modification system restriction subunit
           [Bacteroides sp. 3_1_33FAA]
          Length = 1343

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 79/198 (39%), Gaps = 39/198 (19%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEI 85
            ++  V  +AGSGKT     L  ++  L   +  P   +++ +T           R+   
Sbjct: 289 GQTYLVQHSAGSGKTKSMSWLAFQLANLQNVDNTPVFDSVIMIT----------DRI--- 335

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQT---IHAFCE 141
                 + D  ++ EI  ++       D+ K +R+L   + E    + + T     +F  
Sbjct: 336 ------VLDRNIADEIKGMEEVAGTVKDIRKGSRNLAKALAEGGHRIIISTEQKF-SFAL 388

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI---LEI 198
             +++        SHFA+  +E      ++A  +    ++ D N EL++   E       
Sbjct: 389 PKLKEAA-----GSHFAVIIDEAHTAFGKQASHNV-RQVLTDKN-ELRETVEEFGIESRE 441

Query: 199 SNDEDIETLISDIISNRT 216
           + +   + +++++ + R+
Sbjct: 442 AENNMQDQMLAELQAARS 459


>gi|218960561|ref|YP_001740336.1| DEAD/DEAH box helicase [Candidatus Cloacamonas acidaminovorans]
 gi|167729218|emb|CAO80129.1| DEAD/DEAH box helicase [Candidatus Cloacamonas acidaminovorans]
          Length = 1011

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 77/224 (34%), Gaps = 50/224 (22%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78
           Q+ +    ++  +  +AGSGKT+    L  R+  L           ++ +T         
Sbjct: 286 QVKSDQTGKNYLIQHSAGSGKTNSISWLAHRLANLHTDQDKLIFDCVIVIT--------- 336

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
             RV         + D  L   I +I+      + + +    L   L     + + T   
Sbjct: 337 -DRV---------VLDRQLQDAIYQIEHAMGVVAPIKEGSQQLANALVDGTKIVITT--- 383

Query: 139 FCEAIMQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLAS------IMLDNNEEL 188
                +Q+FP        I         +++  L  +A +  +A       +   ++ + 
Sbjct: 384 -----LQKFPFILRGLLRIAGAKDTDMPDEAALLKSKAWQKKIAGRKYAIIVDEAHSSQT 438

Query: 189 KKAFYEILEISND--------EDIETLISDIISNRTALKLIFFF 224
            +A  ++ +I  D        ED +  ++ ++ +R     + FF
Sbjct: 439 GEAARDMKQILGDKAVRTEDVEDWQDELNLVMESRGQQPNLSFF 482


>gi|328883986|emb|CCA57225.1| putative ATP or GTP binding protein [Streptomyces venezuelae ATCC
           10712]
          Length = 665

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D+ +  + EQ  L+ S+P  S  V    G+GKT + + R   LL    HP  +
Sbjct: 173 DIAATIQPEQDDLVRSEPAASLCVQGAPGTGKTAVGLHRAAYLLY--THPQRV 223


>gi|308233842|ref|ZP_07664579.1| superfamily I DNA and RNA helicase-like protein [Atopobium vaginae
           DSM 15829]
          Length = 754

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 7   FQEHSETIDLISQT-KSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAH 61
            + HSE +  I+ T + EQ          +  +   AGSGKT +L+QR+  LL     
Sbjct: 235 ARRHSEKLQAITATIQREQNKIIRYKDVEALLIDGIAGSGKTSVLLQRIAYLLYQQKD 292


>gi|307611795|emb|CBX01508.1| hypothetical protein LPW_31951 [Legionella pneumophila 130b]
          Length = 480

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 43 GKTHILVQRVLRLLLANAHPSTLLCLTH 70
          GKT +L+Q + +LL     P  +L +T 
Sbjct: 60 GKTTLLLQAIDKLLKEGVKPGNILYVTF 87


>gi|3785995|gb|AAC67341.1| unknown protein [Arabidopsis thaliana]
          Length = 1444

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 15  DLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           + +  T ++        +     V    G+GKT   VQ +L +L  N      L +TH+ 
Sbjct: 862 NSVKFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSN 920

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            A  ++  +++E         D      +   QG++   +D+  +R 
Sbjct: 921 QALNDLFEKIMER--------DVPARYLLRLGQGEQELATDLDFSRQ 959


>gi|227363971|ref|ZP_03848071.1| DNA helicase [Lactobacillus reuteri MM2-3]
 gi|325683176|ref|ZP_08162692.1| ATP-dependent DNA helicase [Lactobacillus reuteri MM4-1A]
 gi|227070893|gb|EEI09216.1| DNA helicase [Lactobacillus reuteri MM2-3]
 gi|324977526|gb|EGC14477.1| ATP-dependent DNA helicase [Lactobacillus reuteri MM4-1A]
          Length = 775

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q K  +++        +V   AGSGKT  ++QRV  LL
Sbjct: 218 QRKQNEIIRDTKNELLFVQGAAGSGKTAAVLQRVAWLL 255


>gi|52843107|ref|YP_096906.1| hypothetical protein lpg2913 [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52630218|gb|AAU28959.1| hypothetical protein lpg2913 [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 480

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 43 GKTHILVQRVLRLLLANAHPSTLLCLTH 70
          GKT +L+Q + +LL     P  +L +T 
Sbjct: 60 GKTTLLLQAIDKLLKEGVKPGNILYVTF 87


>gi|18309122|ref|NP_561056.1| hypothetical protein CPE0140 [Clostridium perfringens str. 13]
 gi|168213345|ref|ZP_02638970.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
 gi|18143797|dbj|BAB79846.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170715111|gb|EDT27293.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
          Length = 589

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           + E      P  +  V+   GSGKT +L+ R + L+  N     +L LT+ K
Sbjct: 205 EQEDFAKRIPLGNYMVTGVPGSGKTVMLLARAIYLVKENPD-WKVLILTYNK 255


>gi|264680507|ref|YP_003280417.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
 gi|262211023|gb|ACY35121.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
          Length = 639

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            +    +    S  + A AG+GKT  L  +   L+        +L L +++A    +  R
Sbjct: 12  DQNQALNSEASSLLIRALAGTGKTTTLAIKATDLIRTQGA-RNVLMLAYSEAGIKAIQAR 70

Query: 82  VLE----IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           +       +     L+ E   A + + QG        S  ++LLI    
Sbjct: 71  LDRISAVRLEGLHLLTLEHFCARLLEEQGDPVPMLSSSLEKNLLIQQAH 119


>gi|255082736|ref|XP_002504354.1| predicted protein [Micromonas sp. RCC299]
 gi|226519622|gb|ACO65612.1| predicted protein [Micromonas sp. RCC299]
          Length = 1248

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
             G+GKT+ LV  V  LLL +  P  LLC   + AA  E++ R++  +         +  
Sbjct: 639 PPGTGKTNTLVGVVSALLLCSPKPRILLCAP-SNAAIDELALRMVTGLLDKDGKKCRMKE 697

Query: 99  AEITKI 104
            ++ ++
Sbjct: 698 GQLVRV 703


>gi|163797533|ref|ZP_02191483.1| UvrD/REP helicase [alpha proteobacterium BAL199]
 gi|159177132|gb|EDP61692.1| UvrD/REP helicase [alpha proteobacterium BAL199]
          Length = 375

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87
           +S +AG+GKT + + R   L  A A P   +L  T +KA A  +  ++  +  
Sbjct: 254 ISGSAGTGKTVVALHRAAYL--ARARPQARVLLTTFSKALANALKAKLQHLAG 304


>gi|163800761|ref|ZP_02194661.1| ATP-dependent helicase HrpA [Vibrio sp. AND4]
 gi|159175110|gb|EDP59907.1| ATP-dependent helicase HrpA [Vibrio sp. AND4]
          Length = 1283

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 53  EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 111

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 112 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 169


>gi|56461630|ref|YP_156911.1| exonuclease V subunit alpha [Idiomarina loihiensis L2TR]
 gi|56180640|gb|AAV83362.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit, superfamily
           I helicase [Idiomarina loihiensis L2TR]
          Length = 647

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 15  DLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRL----LLANAHPSTLLCL 68
           D   +   +++  ++  R+ +  ++   G+GKT+ +V+ +  L    L     P  +   
Sbjct: 172 DKAEEINWQRVACANTVRNRFSVITGGPGTGKTYTVVRLLTALQHQTLFLGLPPLRVSLA 231

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
             T  AAA ++  +   +       D  L+     +   KP    + +
Sbjct: 232 APTGKAAARLTESIESELNRLR--GDAKLATLKDALDAIKPEGKTLHR 277


>gi|330885749|gb|EGH19898.1| hypothetical protein Pgy4_43962 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 483

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|323669723|emb|CBJ94847.1| putative DNA helicase [Salmonella bongori]
          Length = 503

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           T  +  + +       V A AGSGKT  L +R             +L + + +A
Sbjct: 5  DTPEQAAVIAWKGERLVVCAFAGSGKTTTL-RRYA----EENPTERMLYIAYNRA 54


>gi|322832162|ref|YP_004212189.1| hypothetical protein Rahaq_1439 [Rahnella sp. Y9602]
 gi|321167363|gb|ADW73062.1| hypothetical protein Rahaq_1439 [Rahnella sp. Y9602]
          Length = 577

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 32/184 (17%)

Query: 63  STLLCLTHT---KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
           S  L +  T     A   MS R   +   W   +D+ L+    +++G+  +   +   R 
Sbjct: 93  SQYLHVVFTFCENQAGHHMSPRFNPLSPLWVKCADK-LNRIYYRLEGELDDDGSVMTLRS 151

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179
            L +       L + TI    +A+++       +     + D     + I   +  TLA 
Sbjct: 152 FLSS---NGQPLNLTTIDPLAQALIR-------LNPVLRLRD----ARFIRRLRSETLAP 197

Query: 180 IMLDNNEELKKAFYEILEI-------SNDEDIETLISDIISNRTALKLIFFFF----SYL 228
            +  NNEEL K   E+            + ++ + +S +   R  L+  F       S  
Sbjct: 198 RLAVNNEELAKQLDELTRELVHSPQTLKNSELRSGLSAM---RQLLEHYFAEQGTSSSAP 254

Query: 229 WRRK 232
           W++K
Sbjct: 255 WQQK 258


>gi|315226748|ref|ZP_07868536.1| superfamily I DNA and RNA helicase [Parascardovia denticolens DSM
           10105]
 gi|315120880|gb|EFT84012.1| superfamily I DNA and RNA helicase [Parascardovia denticolens DSM
           10105]
          Length = 784

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ  ++ SD  ++  V    G+GKT + + R   LL
Sbjct: 188 SSRRTGKMTDIVATIQAEQDKIIRSDLNQAVVVQGGPGTGKTAVALHRAAYLL 240


>gi|294787096|ref|ZP_06752350.1| putative DNA or RNA helicase, Superfamily I [Parascardovia
           denticolens F0305]
 gi|294485929|gb|EFG33563.1| putative DNA or RNA helicase, Superfamily I [Parascardovia
           denticolens F0305]
          Length = 767

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  ++EQ  ++ SD  ++  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQAEQDKIIRSDLNQAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|227544342|ref|ZP_03974391.1| DNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300908421|ref|ZP_07125884.1| ATP-dependent DNA helicase [Lactobacillus reuteri SD2112]
 gi|227185684|gb|EEI65755.1| DNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300893828|gb|EFK87186.1| ATP-dependent DNA helicase [Lactobacillus reuteri SD2112]
          Length = 775

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q K  +++        +V   AGSGKT  ++QRV  LL
Sbjct: 218 QRKQNEIIRDTKNELLFVQGAAGSGKTAAVLQRVAWLL 255


>gi|118091820|ref|XP_421216.2| PREDICTED: similar to aquarius [Gallus gallus]
          Length = 1513

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  ++ 
Sbjct: 857 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNLYHNFPEQRTLIVTHSNQALNQLF 915

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      + +L   G L+
Sbjct: 916 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRLELLREVGRLQ 968


>gi|268567221|ref|XP_002647745.1| C. briggsae CBR-EMB-4 protein [Caenorhabditis briggsae]
          Length = 244

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 5  NSFQEHSETIDLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHP 62
          N+   +S   + +  T ++        +     V    G+GKT + VQ ++  +  N   
Sbjct: 9  NTPYAYSPNKNQVQFTPAQVEAIKSGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNWPN 67

Query: 63 STLLCLTHTKAAAAEMSHRVLEI 85
             L +TH+  A  ++  +++ +
Sbjct: 68 QRTLIVTHSNQALNQLFEKIIAL 90


>gi|320036907|gb|EFW18845.1| tRNA-splicing endonuclease [Coccidioides posadasii str. Silveira]
          Length = 1086

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 40/138 (28%), Gaps = 17/138 (12%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           S +    T DL          A D      +    GSGKT  +V  V  LL        +
Sbjct: 231 SVKHILGTYDLNLAQAKAVKSAMDNDAFTLIQGPPGSGKTKTIVALVGALLTPTLSEHRI 290

Query: 66  -----------------LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
                            L    + AA  E+  R  E +      + +I    + +     
Sbjct: 291 APPRPGDKTARTLAKKLLVCAPSNAAVDELVMRFKEGVKTLQGRAQKISVLRLGRSDAIN 350

Query: 109 PNKSDMSKARHLLITILE 126
            N  D++    +   + E
Sbjct: 351 TNVLDVTLDERVNAKLSE 368


>gi|302309402|ref|NP_986774.2| AGR108Cp [Ashbya gossypii ATCC 10895]
 gi|299788342|gb|AAS54598.2| AGR108Cp [Ashbya gossypii ATCC 10895]
          Length = 930

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR--LLLANAHPSTLLCLTHTKAA 74
           +++++          R + +    G+GKT ++V+ + R   L        +LC   +  A
Sbjct: 483 LNESQEAAYAYFHANRISLIKGPPGTGKTAVIVEIIKRTVKLETGCP---VLCTAGSNVA 539

Query: 75  AAEMSHRVL 83
              ++ R+L
Sbjct: 540 VDNIAERLL 548


>gi|270339630|ref|ZP_06203374.1| DNA helicase [Prevotella bergensis DSM 17361]
 gi|270334347|gb|EFA45133.1| DNA helicase [Prevotella bergensis DSM 17361]
          Length = 1148

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 17/98 (17%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLAN--AHPST-LLCLTHTKAAAAEM----------SH 80
             +    G+GKT     R LR ++      P   +L L++T  A  E+            
Sbjct: 711 FLLVGPPGTGKT----SRALRFMMEESLVLPDHAILLLSYTNRAVDEICSMLVEAGIDFI 766

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           R+   ++        +LS  I +       +  +  AR
Sbjct: 767 RIGNELSCAPQFKPYLLSGRIGEKPKLSAMRQMLLDAR 804


>gi|239817042|ref|YP_002945952.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus S110]
 gi|239803619|gb|ACS20686.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus S110]
          Length = 612

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           A A EM  R+           DE    E+  + G +P +      R LLI  L      
Sbjct: 27  ATADEMRERIRRKSKLKGRQPDEAALVEVRTLIGARPAEGHR---RDLLIEHLHKLNDA 82


>gi|260836909|ref|XP_002613448.1| hypothetical protein BRAFLDRAFT_123925 [Branchiostoma floridae]
 gi|229298833|gb|EEN69457.1| hypothetical protein BRAFLDRAFT_123925 [Branchiostoma floridae]
          Length = 1114

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 709 TQVEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 767

Query: 80  HRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
            +++ +     HL      +E L  E    +  + N   +++   LL  +      L
Sbjct: 768 EKIMALDIDERHLLRLGHGEEALETEKDFSRYGRVNFV-LARRLELLKEVARLQESL 823


>gi|260793153|ref|XP_002591577.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
 gi|229276785|gb|EEN47588.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
          Length = 3516

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 13   TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            T  +++ ++ + + A+  +    +    G+GKT    + ++R        + +L +  T 
Sbjct: 1337 TKSMMNSSQEKAVQAASSSEITLIQGPPGTGKTKAAAEVIIRW--QGQSDNKILAVAETN 1394


>gi|158337176|ref|YP_001518351.1| DEAD/DEAH box-like helicase [Acaryochloris marina MBIC11017]
 gi|158307417|gb|ABW29034.1| DEAD/DEAH box-like helicase [Acaryochloris marina MBIC11017]
          Length = 909

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHI 47
          + + + + + A D  +S  VSA  GSGKT +
Sbjct: 16 LDEFQQQAINALDANQSVVVSAPTGSGKTMV 46


>gi|269963681|ref|ZP_06178003.1| ATP-dependent helicase HrpA [Vibrio harveyi 1DA3]
 gi|269831593|gb|EEZ85730.1| ATP-dependent helicase HrpA [Vibrio harveyi 1DA3]
          Length = 1338

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 113 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 171

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 172 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 229


>gi|262394319|ref|YP_003286173.1| ATP-dependent helicase HrpA [Vibrio sp. Ex25]
 gi|262337913|gb|ACY51708.1| ATP-dependent helicase HrpA [Vibrio sp. Ex25]
          Length = 1328

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 103 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQP 161

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 162 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 219


>gi|237801916|ref|ZP_04590377.1| hypothetical protein POR16_24033 [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331024774|gb|EGI04830.1| hypothetical protein POR16_24033 [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 487

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|254508102|ref|ZP_05120228.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus 16]
 gi|219548937|gb|EED25936.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus 16]
          Length = 1321

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 96  EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 154

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 155 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 212


>gi|330869779|gb|EGH04488.1| hypothetical protein PSYAE_21540 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 452

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T+ +        +   V A AG+GKT  LV         +     +L L +   A  
Sbjct: 1   MQWTEEQLPAIHSCAKKLLVQAFAGTGKTTTLVG-----YATHNSSVKMLYLCY-NKAV- 53

Query: 77  EM--SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           EM   +R    +T  +                +  N      AR +     E    + V 
Sbjct: 54  EMAAKNRFPRNVTCKTAHGLAYAVYGSQYKHKQAGNLRLTDIARTINTQDWELAKDI-VS 112

Query: 135 TIHAF 139
           T++AF
Sbjct: 113 TLNAF 117


>gi|312218867|emb|CBX98812.1| similar to DNA helicase [Leptosphaeria maculans]
          Length = 607

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTL 65
           ++ ++ E +  A      A +    G+GKTH L++ +L+LL  N       PS +
Sbjct: 212 LNDSQKEAIRFALSSREIALIHGPPGTGKTHTLIELILQLLKQNLRLLVCGPSNI 266


>gi|289628793|ref|ZP_06461747.1| hypothetical protein PsyrpaN_27260 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 459

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +  T+ +        +   V A AG+GKT  LV         +     +L L +   A  
Sbjct: 1   MQWTEEQLPAIHSCAKKLLVQAFAGTGKTTTLVG-----YATHNSSVKMLYLCY-NKAV- 53

Query: 77  EM--SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           EM   +R    +T  +                +  N      AR +     E    + V 
Sbjct: 54  EMAAKNRFPRNVTCKTAHGLAYAVYGSQYKHKQAGNLRLTDIARTINTQDWELAKDI-VS 112

Query: 135 TIHAF 139
           T++AF
Sbjct: 113 TLNAF 117


>gi|238917708|ref|YP_002931225.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
          eligens ATCC 27750]
 gi|238873068|gb|ACR72778.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
          eligens ATCC 27750]
          Length = 368

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          +  + A AGSGKT  LV++ ++         ++L  T+T   A E+  R
Sbjct: 3  NRLIIAAAGSGKTTYLVRQAMQ------QSDSVLITTYT--IANELEIR 43


>gi|221195825|ref|ZP_03568878.1| superfamily I DNA and RNA helicase [Atopobium rimae ATCC 49626]
 gi|221184299|gb|EEE16693.1| superfamily I DNA and RNA helicase [Atopobium rimae ATCC 49626]
          Length = 738

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 9   EHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
            H+E +  I+ T  + +  +         +    AGSGKT +L+QR+  LL
Sbjct: 197 HHTEKLQAITATIQREQNTVVRHADVPVLLVNGIAGSGKTSVLLQRIAYLL 247


>gi|167533433|ref|XP_001748396.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773208|gb|EDQ86851.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1154

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
              +    G+GKT  L++ +L++L     P  +L  T + AAA  +S R+
Sbjct: 694 PFCIFGPPGTGKTTTLLEAILQVLAVKKTP-KVLVCTSSNAAADLISRRL 742


>gi|169606804|ref|XP_001796822.1| hypothetical protein SNOG_06451 [Phaeosphaeria nodorum SN15]
 gi|160707084|gb|EAT86282.2| hypothetical protein SNOG_06451 [Phaeosphaeria nodorum SN15]
          Length = 609

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
              +S   G+GKT  LV+  ++L   +  P TL+C   ++AAA  ++ R+ + ++
Sbjct: 126 PYLISGPPGTGKTKTLVETAMQLFNTSEAPHTLICAP-SEAAADTLALRLKKYLS 179


>gi|254230027|ref|ZP_04923427.1| ATP-dependent helicase HrpA [Vibrio sp. Ex25]
 gi|151937468|gb|EDN56326.1| ATP-dependent helicase HrpA [Vibrio sp. Ex25]
          Length = 1354

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 129 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQP 187

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 188 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 245


>gi|148544832|ref|YP_001272202.1| superfamily I DNA/RNA helicase-like protein [Lactobacillus reuteri
           DSM 20016]
 gi|184154172|ref|YP_001842513.1| DNA helicase [Lactobacillus reuteri JCM 1112]
 gi|148531866|gb|ABQ83865.1| Superfamily I DNA and RNA helicase-like protein [Lactobacillus
           reuteri DSM 20016]
 gi|183225516|dbj|BAG26033.1| DNA helicase [Lactobacillus reuteri JCM 1112]
          Length = 768

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q K  +++        +V   AGSGKT  ++QRV  LL
Sbjct: 211 QRKQNEIIRDTKNELLFVQGAAGSGKTAAVLQRVAWLL 248


>gi|317127868|ref|YP_004094150.1| helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472816|gb|ADU29419.1| putative helicase [Bacillus cellulosilyticus DSM 2522]
          Length = 772

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 3   YHNSFQEHSETIDLISQ-----TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL 56
           +     E SET   + +      K +      P  R+  +   AGSGK+ I + R+  LL
Sbjct: 188 FLQDILEKSETTGYLKEIIATIQKEQDKAIRQPIDRNVLIQGVAGSGKSSIALHRLSFLL 247

Query: 57  LANAH--PSTLLCL 68
             N +  P  +L L
Sbjct: 248 FNNKNLKPEDILIL 261


>gi|309807923|ref|ZP_07701852.1| helicase IV family protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168834|gb|EFO70923.1| helicase IV family protein [Lactobacillus iners LactinV 01V1-a]
          Length = 397

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 170 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 206


>gi|302559923|ref|ZP_07312265.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302477541|gb|EFL40634.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 697

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D+ +  + EQ  L+  D   S  V    G+GKT + + R   LL    HP  +
Sbjct: 200 DIAATIQPEQDDLVRGDLAGSVCVQGAPGTGKTAVGLHRAAYLLY--THPQRI 250


>gi|254487323|ref|ZP_05100528.1| ATPase [Roseobacter sp. GAI101]
 gi|214044192|gb|EEB84830.1| ATPase [Roseobacter sp. GAI101]
          Length = 513

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 24/117 (20%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L +    L  A                  +L  L  T  AA+ +  R     
Sbjct: 52  AGSGKTLLLAELYKALEAAGVEIVSGDYESRKRKDKRSLAILAPTNKAASVLRLRGVPAT 111

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKP-----NKSDMSKARHLLITILETPGGLK 132
            +  I+    +  +    AE     G++P     N+  + +A          PG L 
Sbjct: 112 TIHRILYTPVYDPEYERIAEWLAGNGERPVIEGMNEVSLDRAFAFYANNKSIPGALA 168


>gi|194467114|ref|ZP_03073101.1| DNA helicase [Lactobacillus reuteri 100-23]
 gi|194454150|gb|EDX43047.1| DNA helicase [Lactobacillus reuteri 100-23]
          Length = 775

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q K  +++        +V   AGSGKT  ++QRV  LL
Sbjct: 218 QRKQNEIIRDTKNELLFVQGAAGSGKTAAVLQRVAWLL 255


>gi|91223780|ref|ZP_01259044.1| ATP-dependent helicase HrpA [Vibrio alginolyticus 12G01]
 gi|91191272|gb|EAS77537.1| ATP-dependent helicase HrpA [Vibrio alginolyticus 12G01]
          Length = 1328

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 103 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 161

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 162 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 219


>gi|312115517|ref|YP_004013113.1| P-type conjugative transfer ATPase TrbB [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220646|gb|ADP72014.1| P-type conjugative transfer ATPase TrbB [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 321

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
             A+   ++  +    GSGKT  LV  V+ L+ A      LL L
Sbjct: 142 RAAALGHQNILIVGGTGSGKT-TLVNAVIHLIGAELPGERLLIL 184


>gi|269968550|ref|ZP_06182554.1| ATP-dependent helicase HrpA [Vibrio alginolyticus 40B]
 gi|269826834|gb|EEZ81164.1| ATP-dependent helicase HrpA [Vibrio alginolyticus 40B]
          Length = 1356

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 131 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 189

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 190 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 247


>gi|62185573|ref|YP_220358.1| exodeoxyribonuclease V alpha chain [Chlamydophila abortus S26/3]
 gi|62148640|emb|CAH64413.1| exodeoxyribonuclease V alpha chain [Chlamydophila abortus S26/3]
          Length = 504

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 47/147 (31%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHP 62
           +   +S T   +     EQ        +   + +    G+GKT + VQ ++ L+      
Sbjct: 122 ATNRYSLTTPTLPSLSQEQNKVFHKAVNRCFSLICGGPGTGKTFLAVQIIIALIKQYPKI 181

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +  ++ T  A +                                         RH+L 
Sbjct: 182 -RIAIVSPTGKATS---------------------------------------HIRHILS 201

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPL 149
               +   + +QTIH F    +Q+   
Sbjct: 202 KHHISEASVTIQTIHRF----LQEHAY 224


>gi|326920689|ref|XP_003206601.1| PREDICTED: intron-binding protein aquarius-like [Meleagris
           gallopavo]
          Length = 1419

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  ++ 
Sbjct: 808 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNLYHNFPEQRTLIVTHSNQALNQLF 866

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      + +L   G L+
Sbjct: 867 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRLELLREVGRLQ 919


>gi|257054746|ref|YP_003132578.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
 gi|256584618|gb|ACU95751.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
          Length = 1066

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 29/176 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +     + L S P     V    G+GKT +L       +   A   ++L LT ++ AA  
Sbjct: 12  TWDDGARWLLSAPRGFVRVLGAPGTGKTTLLAATAAARIAEGADEESVLVLTASRQAADA 71

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +   +   +T         +      I                            V+T+H
Sbjct: 72  LRADITRRLTGHRGERAGEVRTVREPI----------------------------VRTVH 103

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
           ++  A+++   +   +     +    +   ++ E     L     D  E L+ A  
Sbjct: 104 SYAFAVLRLQAVRDGL-PVPRLLSGPEQDVVVRELLAGDLERGAPDWPEPLRPALA 158


>gi|237713863|ref|ZP_04544344.1| ATP-dependent DNA helicase replicase [Bacteroides sp. D1]
 gi|262409228|ref|ZP_06085772.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 2_1_22]
 gi|294645792|ref|ZP_06723476.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294809466|ref|ZP_06768170.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446019|gb|EEO51810.1| ATP-dependent DNA helicase replicase [Bacteroides sp. D1]
 gi|262352975|gb|EEZ02071.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 2_1_22]
 gi|292638871|gb|EFF57205.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294443338|gb|EFG12101.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 687

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHP 62
              ++  ++++  + EQ  +  +   S  +    AGSGKT I + R+  LL         
Sbjct: 191 NADNKMKNIVTTIQREQNQIIRNENASVLIIQGVAGSGKTSIALHRIAYLLYAQKGQISS 250

Query: 63  STLLCL 68
             +L +
Sbjct: 251 KDILII 256


>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 441

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 16  LISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILV----QRVLRLLLANAHPSTLLCLT 69
             + T  +Q    A+   R   VS++ GSGKT         R++    A      +L LT
Sbjct: 21  YTTPTPVQQRAIPAAIAGRDLLVSSHTGSGKTAAFTLPALNRIIDRRPAPGSGPRVLVLT 80

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+    E++ +V + +  +      + +A +    G  P  + + + +     ++ TPG
Sbjct: 81  PTR----ELAQQVEKAVQTYGKALRWLNTACLV---GGAPMFAQIKQLQRQCDVVVATPG 133

Query: 130 GL 131
            L
Sbjct: 134 RL 135


>gi|308094674|ref|ZP_05890923.2| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AN-5034]
 gi|308095658|ref|ZP_05907412.2| ATP-dependent helicase HrpA [Vibrio parahaemolyticus Peru-466]
 gi|308125353|ref|ZP_05774766.2| ATP-dependent helicase HrpA [Vibrio parahaemolyticus K5030]
 gi|28806444|dbj|BAC59716.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087971|gb|EFO37666.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus Peru-466]
 gi|308091221|gb|EFO40916.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AN-5034]
 gi|308113627|gb|EFO51167.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus K5030]
          Length = 1328

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 103 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 161

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 162 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 219


>gi|115361031|ref|YP_778168.1| AAA ATPase [Burkholderia ambifaria AMMD]
 gi|115286359|gb|ABI91834.1| AAA ATPase [Burkholderia ambifaria AMMD]
          Length = 466

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAE 77
              A +  R   +   AGSGKT  L +R+  L+  +   P  +        AA E
Sbjct: 174 AAAALNAGRPLLIHGPAGSGKTF-LAERLGALMGGHVPVPHAIY-------AAGE 220


>gi|328873805|gb|EGG22171.1| intron-binding protein [Dictyostelium fasciculatum]
          Length = 1488

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            +++ ++         +    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 873 AQAQAIIKGTREGLTLIQGPPGTGKTDVAVQ-IISNIYHNYPNQRTLIITHSNQALNQLF 931

Query: 80  HRVLEI 85
            ++  +
Sbjct: 932 EKIYRL 937


>gi|281412067|ref|YP_003346146.1| DNA helicase [Thermotoga naphthophila RKU-10]
 gi|281373170|gb|ADA66732.1| DNA helicase [Thermotoga naphthophila RKU-10]
          Length = 650

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 6   SFQEHSETID-LISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPS 63
           SF+E     D  +++++ E +  +  +   ++     G+GKT  LV+ + + +       
Sbjct: 159 SFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARG---K 215

Query: 64  TLLCLTHTKAAAAEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            +L    +  A   +  R+     L  I   S +S  +  + +            + K +
Sbjct: 216 KILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMK 275

Query: 119 HLLITILETPGGLK 132
             L  ++E      
Sbjct: 276 EELAKLIEKRDSFT 289


>gi|253698973|ref|YP_003020162.1| exodeoxyribonuclease V subunit alpha [Geobacter sp. M21]
 gi|251773823|gb|ACT16404.1| exodeoxyribonuclease V, alpha subunit [Geobacter sp. M21]
          Length = 599

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS------TLLCLTHTKAA 74
           +    LA+   R   +S   G+GKT  +V+ VL LLL  A  +       +     T  A
Sbjct: 145 QRVAALAAVTRRFCVISGGPGTGKTSTVVK-VLSLLLEQAEGAGTGAGLRIALTAPTGKA 203

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITK 103
           AA    R+ E I+  +  ++E +   I +
Sbjct: 204 AA----RLKESISDGARFAEEGVRGLIPE 228


>gi|170288736|ref|YP_001738974.1| DNA helicase [Thermotoga sp. RQ2]
 gi|170176239|gb|ACB09291.1| DNA helicase [Thermotoga sp. RQ2]
          Length = 650

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 6   SFQEHSETID-LISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPS 63
           SF+E     D  +++++ E +  +  +   ++     G+GKT  LV+ + + +       
Sbjct: 159 SFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARG---K 215

Query: 64  TLLCLTHTKAAAAEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            +L    +  A   +  R+     L  I   S +S  +  + +            + K +
Sbjct: 216 KILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMK 275

Query: 119 HLLITILETPGGLK 132
             L  ++E      
Sbjct: 276 EELAKLIEKRDSFT 289


>gi|154301083|ref|XP_001550955.1| hypothetical protein BC1G_10514 [Botryotinia fuckeliana B05.10]
 gi|150856262|gb|EDN31454.1| hypothetical protein BC1G_10514 [Botryotinia fuckeliana B05.10]
          Length = 547

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 27/139 (19%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHIL---VQRVLRLLL 57
           M   N+F++  E+I+  + TK +Q     P+ +  V        THI    V   L ++L
Sbjct: 393 MEEINNFKQSPESIEQSTNTKPQQ-----PSYNILVV-------THIFACSVSIFLEVVL 440

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           + A P              E+ H V   + ++++++D  L   +        + ++    
Sbjct: 441 SGALPKL-----------PEIQHEVNRALESYAYINDPDLLNVLRWPLCVAASVAEPD-Q 488

Query: 118 RHLLITILETPGGLKVQTI 136
                ++L +P    + T 
Sbjct: 489 YDFFRSLLASPNVAWIGTF 507


>gi|308126472|ref|ZP_05910401.2| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AQ4037]
 gi|308107711|gb|EFO45251.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AQ4037]
          Length = 1328

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 103 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 161

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 162 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 219


>gi|302771295|ref|XP_002969066.1| hypothetical protein SELMODRAFT_440582 [Selaginella
          moellendorffii]
 gi|300163571|gb|EFJ30182.1| hypothetical protein SELMODRAFT_440582 [Selaginella
          moellendorffii]
          Length = 941

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 34 AWVSANAGSGKTHILVQRVLRLLLA 58
            + A  GSGK   +V R+L LL  
Sbjct: 18 LLIVAGPGSGKISTMVARILTLLNE 42


>gi|299147637|ref|ZP_07040701.1| putative ATP-dependent DNA helicase replicase [Bacteroides sp.
           3_1_23]
 gi|298514424|gb|EFI38309.1| putative ATP-dependent DNA helicase replicase [Bacteroides sp.
           3_1_23]
          Length = 687

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHP 62
              ++  ++++  + EQ  +  +   S  +    AGSGKT I + R+  LL         
Sbjct: 191 NADNKMKNIVTTIQREQNQIIRNENASVLIIQGVAGSGKTSIALHRIAYLLYAQKGQISS 250

Query: 63  STLLCL 68
             +L +
Sbjct: 251 KDILII 256


>gi|296471357|gb|DAA13472.1| immunoglobulin mu binding protein 2 [Bos taurus]
          Length = 334

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 23/154 (14%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  ++ E +L A      A +    G+GKT  +V+ +L+ +      S +LC   +  A 
Sbjct: 189 LDASQQEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKRG---SKVLCCAPSNVAV 245

Query: 76  AEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
             +  R+ +       +   + L D I    +  +  +  +   ++  R  +     +  
Sbjct: 246 DNLVERLAQWKQRILRLGHPARLLDSIQQHSLDAVLARSDSARIVADIRRDIDQAWVSSS 305

Query: 130 GLKVQTIHAFCEAI-----MQQFPLEANITSHFA 158
            L        C  +     ++  P  + I   F+
Sbjct: 306 RL--------CLLLVWLSDLRSLPGVSGILLGFS 331


>gi|295836887|ref|ZP_06823820.1| I DNA or RNA helicase [Streptomyces sp. SPB74]
 gi|197699120|gb|EDY46053.1| I DNA or RNA helicase [Streptomyces sp. SPB74]
          Length = 790

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ ++   P  S   V    G+GKT + + R   LL
Sbjct: 210 DIVASIQAEQDMVIRAPAASVTLVEGGPGTGKTAVALHRAAYLL 253


>gi|118464254|ref|YP_881926.1| ATP-dependent helicase HrpA [Mycobacterium avium 104]
 gi|118165541|gb|ABK66438.1| ATP-dependent helicase HrpA [Mycobacterium avium 104]
          Length = 1317

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL    +  ++  +       V A   GSGKT  L        R +R  + +  P  L  
Sbjct: 74  DLPVSERRREIADAIRAHQVVVIAGETGSGKTTQLPKVCLEAGRGIRGTIGHTQPRRLAA 133

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E+   + E +      +D++    + K+       +++ + R LL 
Sbjct: 134 RTVAQRIADELGSPLGETVGYTVRFTDQVSDRTLIKLMTDGILLAEIQRDRRLLR 188


>gi|148547781|ref|YP_001267883.1| hypothetical protein Pput_2564 [Pseudomonas putida F1]
 gi|148511839|gb|ABQ78699.1| hypothetical protein Pput_2564 [Pseudomonas putida F1]
          Length = 636

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 17/161 (10%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +Y  S        D  ++   E L   D   S  V   AG+GKT  L+ +  RLL     
Sbjct: 138 VYLPSLASDLMLSDQQNRLLREFLSGVD--ESVAVQGFAGTGKTF-LIHQFARLL----E 190

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIIT----AWSHLSDEILSAEITKIQGKKPNKSDM--- 114
           P   L L  T+     +  RV +        +  L+DE+L+ ++T    +  +       
Sbjct: 191 PQRTLLLALTEGQLRALQARVKDAAAYTALTFGQLADELLNRDLTSNGWRLRDPYRTKLS 250

Query: 115 ---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
               +A+ +    +   G L  + + A C   ++ F   A+
Sbjct: 251 WRPQEAQVVRWLAIPDIGPLAARDVVALCIRAVRTFCHSAD 291


>gi|328907790|gb|EGG27553.1| UvrD/REP helicase [Propionibacterium sp. P08]
          Length = 1093

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D      V    G+G+T + ++   R + +    S +L L  T+ +A
Sbjct: 28  MHGWDDPQARVLADDADMVLVMGGPGTGRTSLCLEIAARHVASGGLLSDVLVLAQTRPSA 87

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI--TILET 127
             +   ++  +         +    + +     P++  ++      + R LL    + + 
Sbjct: 88  QALRTALVRRLAGAHLEPQVMTVHALARRIVASPSRRLLTAPEQEFRMRELLAARDMSDW 147

Query: 128 PGGLK 132
           P  L+
Sbjct: 148 PDELR 152


>gi|293371806|ref|ZP_06618216.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292633258|gb|EFF51829.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 687

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHP 62
              ++  ++++  + EQ  +  +   S  +    AGSGKT I + R+  LL         
Sbjct: 191 NADNKMKNIVTTIQREQNQIIRNENASVLIIQGVAGSGKTSIALHRIAYLLYAQKGQISS 250

Query: 63  STLLCL 68
             +L +
Sbjct: 251 KDILII 256


>gi|289650694|ref|ZP_06482037.1| hypothetical protein Psyrpa2_23602 [Pseudomonas syringae pv.
          aesculi str. 2250]
          Length = 485

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|312114515|ref|YP_004012111.1| P-type conjugative transfer ATPase TrbB [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219644|gb|ADP71012.1| P-type conjugative transfer ATPase TrbB [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 321

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
             A+   ++  +    GSGKT  LV  V+ L+        LL L
Sbjct: 142 RAAALGHQNILIVGGTGSGKT-TLVNAVIHLIGTELPGERLLIL 184


>gi|154509055|ref|ZP_02044697.1| hypothetical protein ACTODO_01572 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798689|gb|EDN81109.1| hypothetical protein ACTODO_01572 [Actinomyces odontolyticus ATCC
           17982]
          Length = 757

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +++  S        D+++  +SEQ     +       V    G+GKT + + R+  LL
Sbjct: 166 LMHALSEAREGRMGDIVATIQSEQDRIIRASDKGLLVVQGGPGTGKTAVALHRIAYLL 223


>gi|73949168|ref|XP_544270.2| PREDICTED: similar to F-box only protein, helicase, 18 isoform 1
           [Canis familiaris]
          Length = 1186

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ S       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 582 IQLTHEQQLILSHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSTSRFLYVTFNK 635


>gi|70732032|ref|YP_261781.1| hypothetical protein PFL_4698 [Pseudomonas fluorescens Pf-5]
 gi|68346331|gb|AAY93937.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 486

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRL 55
          +  T+ +  +         V A AG+GKT  LV         R+L L
Sbjct: 1  MQWTQQQLPIIGSKASEIVVKAFAGTGKTTTLVGFAKANPQLRILYL 47


>gi|320326191|gb|EFW82246.1| hypothetical protein PsgB076_02895 [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 485

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|295085344|emb|CBK66867.1| Superfamily I DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 687

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHP 62
              ++  ++++  + EQ  +  +   S  +    AGSGKT I + R+  LL         
Sbjct: 191 NADNKMKNIVTTIQREQNQIIRNENASVLIIQGVAGSGKTSIALHRIAYLLYAQKGQISS 250

Query: 63  STLLCL 68
             +L +
Sbjct: 251 KDILII 256


>gi|226291739|gb|EEH47167.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 724

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 13  TIDLISQT----KSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           TID I  T    + E +  A      A +    G+GKT+ L++ +L+LL  N
Sbjct: 250 TIDFIDPTLNDSQREAIRFALASREIALIHGPPGTGKTYTLIELILQLLRRN 301


>gi|295667237|ref|XP_002794168.1| helicase [Paracoccidioides brasiliensis Pb01]
 gi|226286274|gb|EEH41840.1| helicase [Paracoccidioides brasiliensis Pb01]
          Length = 739

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 13  TIDLISQT----KSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           TID I  T    + E +  A      A +    G+GKT+ L++ +L+LL  N
Sbjct: 250 TIDFIDPTLNDSQREAIRFALASREIALIHGPPGTGKTYTLIELILQLLRRN 301


>gi|153836525|ref|ZP_01989192.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AQ3810]
 gi|149750123|gb|EDM60868.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AQ3810]
          Length = 1335

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 110 EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 168

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 169 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 226


>gi|117924652|ref|YP_865269.1| UvrD/REP helicase [Magnetococcus sp. MC-1]
 gi|117608408|gb|ABK43863.1| UvrD/REP helicase [Magnetococcus sp. MC-1]
          Length = 712

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEIITA 88
                V   AG+GKT + + R   L           +L  T T+  AA++   + +I   
Sbjct: 259 NGPVRVLGGAGTGKTVVALHRAKWLAQTRCQDGRKRVLFTTFTRNLAADIKANLRKICGE 318


>gi|328473761|gb|EGF44596.1| ATP-dependent RNA helicase HrpA [Vibrio parahaemolyticus 10329]
          Length = 1278

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 53  EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 111

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 112 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 169


>gi|327272054|ref|XP_003220801.1| PREDICTED: f-box only protein 18-like, partial [Anolis
           carolinensis]
          Length = 1114

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQ--------R 51
           Y   FQ  S     +  T  +Q +   A  P +   + A AG+GKT  LV+        R
Sbjct: 501 YGRGFQNSSRP--ALQPTCEQQQIINHAIAPKQVVKIMAFAGTGKTSTLVKYAEKWSNLR 558

Query: 52  VLRLLLANAHPST 64
            L L         
Sbjct: 559 FLYLAFNKTIAEQ 571


>gi|315923318|ref|ZP_07919558.1| ATP-dependent DNA helicase replicase [Bacteroides sp. D2]
 gi|313697193|gb|EFS34028.1| ATP-dependent DNA helicase replicase [Bacteroides sp. D2]
          Length = 573

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHP 62
              ++  ++++  + EQ  +  +   S  +    AGSGKT I + R+  LL         
Sbjct: 77  NADNKMKNIVTTIQREQNQIIRNENASVLIIQGVAGSGKTSIALHRIAYLLYAQKGQISS 136

Query: 63  STLLCL 68
             +L +
Sbjct: 137 KDILII 142


>gi|309776565|ref|ZP_07671545.1| putative type I restriction-modification system, R subunit
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915666|gb|EFP61426.1| putative type I restriction-modification system, R subunit
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1023

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 81/208 (38%), Gaps = 44/208 (21%)

Query: 35  WVSANAGSGKTHILVQRVLRL--LLANAHP--STLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +  +AGSGK++ +     RL  L  +AHP  +++L +T           R+L+      
Sbjct: 299 LIQHSAGSGKSNSIAWLAYRLMELEKDAHPVFNSILVVT---------DRRILDK----Q 345

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150
              +    A++  +     +  D+ K+      I+       + TI        ++FP  
Sbjct: 346 IRDNIKQFAQVGNVVAWAEHSGDLRKSITDGKRII-------ITTI--------EKFPYV 390

Query: 151 A-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
             +I +      + +   LI+EA     +     N+ ++  A   +    +D D E  I+
Sbjct: 391 VPDIGAEHK---DNKFAVLIDEAH----SGQNGRNSAQMNLALSGLAS-DDDMDNEDKIN 442

Query: 210 DIISNRTALK--LIFFFFSYLWRRKIIE 235
            ++  R  LK    F F +   + K +E
Sbjct: 443 AMMEGRKLLKNASYFAFTATP-KNKTLE 469


>gi|302677426|ref|XP_003028396.1| hypothetical protein SCHCODRAFT_70379 [Schizophyllum commune H4-8]
 gi|300102084|gb|EFI93493.1| hypothetical protein SCHCODRAFT_70379 [Schizophyllum commune H4-8]
          Length = 689

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 20  TKSEQLLASDP------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
              EQ +A+        +    +S   G+GKT  LV+ VL++L        LLC
Sbjct: 176 LNEEQKIAASSIATHQFSVPYLISGPPGTGKTRTLVECVLQILRLQPEACILLC 229


>gi|298482316|ref|ZP_07000503.1| ATP-dependent DNA helicase rep [Bacteroides sp. D22]
 gi|298271603|gb|EFI13177.1| ATP-dependent DNA helicase rep [Bacteroides sp. D22]
          Length = 687

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHP 62
              ++  ++++  + EQ  +  +   S  +    AGSGKT I + R+  LL         
Sbjct: 191 NADNKMKNIVTTIQREQNQIIRNENASVLIIQGVAGSGKTSIALHRIAYLLYAQKGQISS 250

Query: 63  STLLCL 68
             +L +
Sbjct: 251 KDILII 256


>gi|262374036|ref|ZP_06067313.1| superfamily I DNA and RNA helicase [Acinetobacter junii SH205]
 gi|262311047|gb|EEY92134.1| superfamily I DNA and RNA helicase [Acinetobacter junii SH205]
          Length = 500

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A+E
Sbjct: 12 EQAIAIDNARLGQSFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIASE 64


>gi|256397208|ref|YP_003118772.1| ATP-dependent DNA helicase [Catenulispora acidiphila DSM 44928]
 gi|256363434|gb|ACU76931.1| ATP-dependent DNA helicase [Catenulispora acidiphila DSM 44928]
          Length = 719

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           D++S  + EQ  ++ +D   S  V    G+GKT + + RV  LL A+  
Sbjct: 181 DIVSTIQPEQDEIVRADVNVSVCVQGAPGTGKTAVGLHRVAFLLYAHRD 229


>gi|237722801|ref|ZP_04553282.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 2_2_4]
 gi|229447323|gb|EEO53114.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 2_2_4]
          Length = 687

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHP 62
              ++  ++++  + EQ  +  +   S  +    AGSGKT I + R+  LL         
Sbjct: 191 NADNKMKNIVTTIQREQNQIIRNENASVLIIQGVAGSGKTSIALHRIAYLLYAQKGQISS 250

Query: 63  STLLCL 68
             +L +
Sbjct: 251 KDILII 256


>gi|229012072|ref|ZP_04169251.1| UvrD/Rep helicase [Bacillus mycoides DSM 2048]
 gi|228749160|gb|EEL99006.1| UvrD/Rep helicase [Bacillus mycoides DSM 2048]
          Length = 700

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 172 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 231


>gi|168060609|ref|XP_001782287.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666217|gb|EDQ52877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1117

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V    G+GKT  ++  V  LL+       +L    + AA  E++ R++  +   S    
Sbjct: 644 LVQGPPGTGKTSTIIGMVSSLLIEEPSV-RILVCAPSNAALDEVAARLVNRMLDKSGDFY 702

Query: 95  EILSAEITKIQGKK 108
             +   I +   K+
Sbjct: 703 SPVDGAIVRFGSKR 716


>gi|161511056|ref|NP_797832.2| ATP-dependent RNA helicase HrpA [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 1278

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           E+ E +  +SQ + +   A +  +   V+   GSGKT  L +    L      L+ +  P
Sbjct: 53  EYPEIL-PVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQP 111

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R L
Sbjct: 112 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFL 169


>gi|313792360|gb|EFS40459.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1]
 gi|313816226|gb|EFS53940.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1]
 gi|313832979|gb|EFS70693.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1]
 gi|314960466|gb|EFT04568.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2]
 gi|314962479|gb|EFT06579.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1]
 gi|314972836|gb|EFT16933.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1]
 gi|314983660|gb|EFT27752.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1]
 gi|315085338|gb|EFT57314.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3]
 gi|315109403|gb|EFT81379.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2]
 gi|327329832|gb|EGE71587.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA2]
 gi|327443714|gb|EGE90368.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2]
 gi|327443749|gb|EGE90403.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2]
          Length = 1061

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 4   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|196012066|ref|XP_002115896.1| hypothetical protein TRIADDRAFT_30088 [Trichoplax adhaerens]
 gi|190581672|gb|EDV21748.1| hypothetical protein TRIADDRAFT_30088 [Trichoplax adhaerens]
          Length = 1356

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V    G+GKT + VQ ++  L  N      L +TH+  A  ++  +++ +     HL  
Sbjct: 795 LVVGPPGTGKTDVAVQ-IISNLYHNFQDQRTLIVTHSNQALNQLFEKIIALDIDERHLLR 853

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHA 138
                E  + +        ++      + +L     L+  +  IH 
Sbjct: 854 LGHGEESLETERDFSRYGRVNYILERRLQLLHEVAKLQESIG-IHG 898


>gi|290959388|ref|YP_003490570.1| ATP/GTP binding protein [Streptomyces scabiei 87.22]
 gi|260648914|emb|CBG72028.1| putative ATP/GTP binding protein [Streptomyces scabiei 87.22]
          Length = 665

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D+ +  + EQ  L+ +D   S  V    G+GKT + + R   LL    +P  +
Sbjct: 154 DIAATIQPEQDDLVRADLGTSVCVQGAPGTGKTAVGLHRAAYLLY--TYPQRI 204


>gi|229133699|ref|ZP_04262525.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST196]
 gi|228649734|gb|EEL05743.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST196]
          Length = 700

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 172 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 231


>gi|164687579|ref|ZP_02211607.1| hypothetical protein CLOBAR_01220 [Clostridium bartlettii DSM
           16795]
 gi|164603353|gb|EDQ96818.1| hypothetical protein CLOBAR_01220 [Clostridium bartlettii DSM
           16795]
          Length = 1241

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 15  DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRV---LRLLLANAHPSTLLCLTH 70
           +++++ +SEQ+      +    +S  AGSGKT   V+ +   +  +      S +L +T 
Sbjct: 580 EVLTKEQSEQIHTFIQKSEPFILSGIAGSGKTISTVKLIPDMVEKIKNMGSDSKILYVTF 639

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           +      +  +V+E    ++   D     ++      K N   + ++R
Sbjct: 640 SNNLKQYVKEKVIESYYEFNEYIDIKTFEDVCTELNYKYNNKKIDRSR 687


>gi|91788409|ref|YP_549361.1| ATPase [Polaromonas sp. JS666]
 gi|91697634|gb|ABE44463.1| ATPase [Polaromonas sp. JS666]
          Length = 441

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLC 67
            +   A +  R+ ++   AG+GKT+ L +R+  LL  N   P  +L 
Sbjct: 161 EQLGAAVNSGRAIFIHGPAGAGKTY-LAERMTGLLKGNISVPYAILV 206


>gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 539

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 22  DTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLELLSKGQKAQAGQVRTLVLTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      + G  P    ++K RH +  ++ TPG 
Sbjct: 82  TR----ELAAQVAESVETYG----KYLPLRSAVVFGGVPINPQIAKLRHGVDVLVATPGR 133

Query: 131 L 131
           L
Sbjct: 134 L 134


>gi|313812633|gb|EFS50347.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1]
          Length = 1061

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 4   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|170701161|ref|ZP_02892134.1| AAA ATPase [Burkholderia ambifaria IOP40-10]
 gi|170133942|gb|EDT02297.1| AAA ATPase [Burkholderia ambifaria IOP40-10]
          Length = 466

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAE 77
              A +  R   +   AGSGKT  L +R+  L+  +   P  +        AA E
Sbjct: 174 AAAALNAGRPLLIHGPAGSGKTF-LAERLGALMGGHVPVPHAIY-------AAGE 220


>gi|148270052|ref|YP_001244512.1| putative DNA helicase [Thermotoga petrophila RKU-1]
 gi|147735596|gb|ABQ46936.1| putative DNA helicase [Thermotoga petrophila RKU-1]
          Length = 650

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 6   SFQEHSETID-LISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPS 63
           SF+E     D  +++++ E +  +  +   ++     G+GKT  LV+ + + +       
Sbjct: 159 SFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARG---K 215

Query: 64  TLLCLTHTKAAAAEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            +L    +  A   +  R+     L  I   S +S  +  + +            + K +
Sbjct: 216 KILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMK 275

Query: 119 HLLITILETPGGLK 132
             L  ++E      
Sbjct: 276 EELAKLIEKRDSFT 289


>gi|148654244|ref|YP_001274449.1| AAA ATPase [Roseiflexus sp. RS-1]
 gi|148566354|gb|ABQ88499.1| AAA ATPase [Roseiflexus sp. RS-1]
          Length = 606

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Y  +++   +    ++ T+ E L  A     +  +    G+GKT +L  R+++LL+ +  
Sbjct: 185 YERAYERAEQW--GLNATQCEALANAYATNLTWLIQGPPGTGKTLVLA-RLVQLLVEDG- 240

Query: 62  PSTLLCLTHTKAA 74
              +     T  A
Sbjct: 241 -ERVFVTAFTHRA 252


>gi|66044699|ref|YP_234540.1| hypothetical protein Psyr_1452 [Pseudomonas syringae pv. syringae
          B728a]
 gi|63255406|gb|AAY36502.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
          B728a]
 gi|330900186|gb|EGH31605.1| hypothetical protein PSYJA_22573 [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 487

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLV 33


>gi|315077695|gb|EFT49746.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2]
          Length = 1061

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 4   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|313764134|gb|EFS35498.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1]
 gi|314914864|gb|EFS78695.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4]
 gi|314929975|gb|EFS93806.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1]
 gi|315101552|gb|EFT73528.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1]
 gi|327452205|gb|EGE98859.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3]
 gi|328753881|gb|EGF67497.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1]
          Length = 1061

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 4   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|295700367|ref|YP_003608260.1| type II secretion system protein E [Burkholderia sp. CCGE1002]
 gi|295439580|gb|ADG18749.1| type II secretion system protein E [Burkholderia sp. CCGE1002]
          Length = 453

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 25/146 (17%)

Query: 8   QEHSETIDLISQTK--SEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHP-- 62
            + ++ I+L S T   +E L A    + +  VS   GSGKT +L       +L+   P  
Sbjct: 197 LQVADLIELQSLTPPMAEVLDALARAKVNILVSGGTGSGKTTLL------NVLSGFIPGD 250

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK------IQGKKPNKSDMSK 116
             ++ +   + AA E+  R   ++   +   +     EIT+          +P++  + +
Sbjct: 251 ERIVTI---EDAA-ELQLRQQHVLRLETRSPNIEGRGEITQRTLVRNALRMRPDRIILGE 306

Query: 117 ARHL----LITILETPGGLKVQTIHA 138
            R      ++  + T     + TIHA
Sbjct: 307 VRGAEALDMLNAMNTGHEGSLSTIHA 332


>gi|229161682|ref|ZP_04289662.1| UvrD/Rep helicase [Bacillus cereus R309803]
 gi|228621927|gb|EEK78773.1| UvrD/Rep helicase [Bacillus cereus R309803]
          Length = 689

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|183981381|ref|YP_001849672.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
 gi|183174707|gb|ACC39817.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
          Length = 1057

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 54/174 (31%), Gaps = 30/174 (17%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           V    G+GK+ +LVQ  +  + A A P ++L LT                      +   
Sbjct: 23  VLGGPGTGKSALLVQAAIAHIAAGADPESVLLLT------------------GSGRMGMW 64

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
             S+  T +       +  +  R  L+  +           H++  A++++        +
Sbjct: 65  ARSSLTTALLRSHTTGTGRAAVREPLVRSV-----------HSYAYAVLRRAAERTG-DA 112

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
              +    +   +I E     L       +   +     +       ++  L++
Sbjct: 113 PPRLLTSAEQDAIIRELLAGDLEDGPSARSAWPRHLLPALTTAGFATELRNLLA 166


>gi|163940561|ref|YP_001645445.1| UvrD/Rep helicase family protein [Bacillus weihenstephanensis
           KBAB4]
 gi|163862758|gb|ABY43817.1| UvrD/Rep helicase family protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 691

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|255319703|ref|ZP_05360911.1| putative DNA helicase [Acinetobacter radioresistens SK82]
 gi|262380015|ref|ZP_06073170.1| superfamily I DNA and RNA helicase [Acinetobacter radioresistens
          SH164]
 gi|255303232|gb|EET82441.1| putative DNA helicase [Acinetobacter radioresistens SK82]
 gi|262298209|gb|EEY86123.1| superfamily I DNA and RNA helicase [Acinetobacter radioresistens
          SH164]
          Length = 500

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 19 QTKSEQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          Q   EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A
Sbjct: 8  QATYEQAVAIDNARLGQSFKVIAYAGTGKTTTL-----QMISDAMPQRRGMYLAFNKAIA 62

Query: 76 AE 77
          AE
Sbjct: 63 AE 64


>gi|257790572|ref|YP_003181178.1| ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase
          superfamily I member-like protein [Eggerthella lenta
          DSM 2243]
 gi|257474469|gb|ACV54789.1| ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase
          superfamily I member-like protein [Eggerthella lenta
          DSM 2243]
          Length = 614

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHIL 48
          D ++  ++E L A    R+ ++S NAG+GK+++L
Sbjct: 7  DRLTPEQAEALSALRDGRNVFLSGNAGTGKSYVL 40


>gi|212715548|ref|ZP_03323676.1| hypothetical protein BIFCAT_00446 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660915|gb|EEB21490.1| hypothetical protein BIFCAT_00446 [Bifidobacterium catenulatum DSM
           16992]
          Length = 759

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +  D+++  ++EQ     +D  ++  V    G+GKT + + R   LL
Sbjct: 177 KMTDIVATIQAEQDRIIRADLNQAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|255951120|ref|XP_002566327.1| Pc22g24390 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593344|emb|CAP99727.1| Pc22g24390 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2167

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 19/137 (13%)

Query: 13   TIDLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLL----------LAN 59
             +D  S  +++      A D      +    GSGKT  +   V  LL          +  
Sbjct: 1300 IMDNYSINRAQARAIKSAVDNDAFTLIQGPPGSGKTKTITALVGSLLSDVLGKQVVKVNG 1359

Query: 60   AHPST------LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
            A  +       LL    + AA  E+  R+ + +       +++    + +         D
Sbjct: 1360 APVARNALSKKLLLCAPSNAAVDELVMRLKDGVKTTHGRQEKVSVLRLGRSDAINTKVLD 1419

Query: 114  MSKARHLLITILETPGG 130
            ++    +   + + P  
Sbjct: 1420 VTLEEMVNARLNQDPSK 1436


>gi|261408517|ref|YP_003244758.1| hypothetical protein GYMC10_4732 [Paenibacillus sp. Y412MC10]
 gi|261284980|gb|ACX66951.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
          Length = 688

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           S     +  ++++  + EQ     ++      +   AGSGKT + + RV  LL  +  
Sbjct: 189 SSNSDEKMKNIVATIQQEQNAIIRNETAHELIIQGAAGSGKTSVALHRVAFLLYRHKE 246


>gi|21222709|ref|NP_628488.1| ATP/GTP binding protein [Streptomyces coelicolor A3(2)]
 gi|8248815|emb|CAB93076.1| putative ATP/GTP binding protein [Streptomyces coelicolor A3(2)]
          Length = 681

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ          S  V    G+GKT + + RV  LL
Sbjct: 178 DIVATIQPEQDEIVRAGLAGSVCVQGGPGTGKTAVGLHRVAYLL 221


>gi|314989616|gb|EFT33707.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3]
 gi|315084653|gb|EFT56629.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2]
 gi|328754849|gb|EGF68465.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1]
          Length = 1061

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 4   MHGWDGLQTRVLTDDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|299532932|ref|ZP_07046319.1| UvrD/REP helicase [Comamonas testosteroni S44]
 gi|298719156|gb|EFI60126.1| UvrD/REP helicase [Comamonas testosteroni S44]
          Length = 639

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            +    +    S  + A AG+GKT  L  +   L+        +L L +++A    +  R
Sbjct: 12  DQNQALNSEASSLLIRALAGTGKTTTLAIKATDLICTQGA-RNVLMLAYSEAGIKAIQAR 70

Query: 82  VLE----IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
           +       +     L+ E   A + + QG        S  ++LLI    
Sbjct: 71  LDRISAVRLEGLHLLTLEHFCARLLEEQGDPVPMLSSSLEKNLLIQQAH 119


>gi|228939931|ref|ZP_04102508.1| UvrD/Rep helicase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228972823|ref|ZP_04133421.1| UvrD/Rep helicase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228979405|ref|ZP_04139740.1| UvrD/Rep helicase [Bacillus thuringiensis Bt407]
 gi|228780339|gb|EEM28571.1| UvrD/Rep helicase [Bacillus thuringiensis Bt407]
 gi|228786909|gb|EEM34890.1| UvrD/Rep helicase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228819862|gb|EEM65910.1| UvrD/Rep helicase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326940582|gb|AEA16478.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229145385|ref|ZP_04273774.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST24]
 gi|228638224|gb|EEK94665.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST24]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|254510169|ref|ZP_05122236.1| ATPase [Rhodobacteraceae bacterium KLH11]
 gi|221533880|gb|EEE36868.1| ATPase [Rhodobacteraceae bacterium KLH11]
          Length = 510

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L +    L     +               +L  L  T  AA+ +  R     
Sbjct: 53  AGSGKTLLLAELYKALAETGVNLVSGDFESRKSRDKRSLAILAPTNKAASVLRLRGVPAT 112

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+    +  +    AE      ++P         + +A          PG L    
Sbjct: 113 TIHRILYTPVYDPEYERIAEWLAGNDERPEIEGLTDEALDRAAAFYANNKSIPGALA--- 169

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           ++ PL+       ++ D+ Q + L E
Sbjct: 170 ----AAGLRGSDFITGWKRREEPLDIGFVDEASMLDDRQFEDLKE 210


>gi|194757794|ref|XP_001961147.1| GF11149 [Drosophila ananassae]
 gi|190622445|gb|EDV37969.1| GF11149 [Drosophila ananassae]
          Length = 1335

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            +  L+        +    G+GKT  + + + +L +     + +L L  +  A  E++ R
Sbjct: 624 RQVALSKKLPAPYIIVGPPGTGKTATICEAIYQLYVRRPE-THILVLAGSNTACDEVALR 682

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
           +L  I          L+        ++ +  D
Sbjct: 683 LLRAIAKAPESHPRPLTRIFAASCDRRIDNID 714


>gi|327329921|gb|EGE71675.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL097PA1]
          Length = 1058

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 1   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|314986297|gb|EFT30389.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2]
          Length = 1058

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 1   MHGWDGLQTRVLTDDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|311897796|dbj|BAJ30204.1| hypothetical protein KSE_44210 [Kitasatospora setae KM-6054]
          Length = 698

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  ++ +D T +  V    G+GKT + + RV  LL
Sbjct: 194 DIVATIQPEQDEIVRADVTGTICVQGAPGTGKTAVGLHRVAYLL 237


>gi|295130854|ref|YP_003581517.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|291375110|gb|ADD98964.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|313771952|gb|EFS37918.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1]
 gi|313801692|gb|EFS42932.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2]
 gi|313807184|gb|EFS45677.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2]
 gi|313809681|gb|EFS47415.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1]
 gi|313819378|gb|EFS57092.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2]
 gi|313830017|gb|EFS67731.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1]
 gi|313838406|gb|EFS76120.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1]
 gi|314967656|gb|EFT11755.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1]
 gi|314975742|gb|EFT19837.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1]
 gi|315095787|gb|EFT67763.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1]
 gi|315098849|gb|EFT70825.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2]
 gi|327442648|gb|EGE89302.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1]
 gi|327453454|gb|EGF00109.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1]
 gi|328761487|gb|EGF75011.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL099PA1]
          Length = 1058

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 1   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|218779301|ref|YP_002430619.1| superfamily I DNA and RNA helicase-like protein
          [Desulfatibacillum alkenivorans AK-01]
 gi|218760685|gb|ACL03151.1| Superfamily I DNA and RNA helicase-like protein
          [Desulfatibacillum alkenivorans AK-01]
          Length = 467

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 22 SEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTH 70
          +EQL     +P     +   AGSGKT   + ++  L+              P  +L LT 
Sbjct: 11 AEQLKIFGRNPQGLLIIRGAAGSGKTTTAILKLKSLIESFKSRKERQDIQEPVRILALTF 70

Query: 71 TK 72
           +
Sbjct: 71 NR 72


>gi|160883556|ref|ZP_02064559.1| hypothetical protein BACOVA_01528 [Bacteroides ovatus ATCC 8483]
 gi|156110969|gb|EDO12714.1| hypothetical protein BACOVA_01528 [Bacteroides ovatus ATCC 8483]
          Length = 687

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHP 62
              ++  ++++  + EQ  +  +   S  +    AGSGKT I + R+  LL         
Sbjct: 191 NADNKMKNIVTTIQREQNQIIRNENASVLIIQGVAGSGKTSIALHRIAYLLYAQKGQISS 250

Query: 63  STLLCL 68
             +L +
Sbjct: 251 KDILII 256


>gi|172065271|ref|YP_001815983.1| AAA ATPase [Burkholderia ambifaria MC40-6]
 gi|171997513|gb|ACB68430.1| AAA ATPase [Burkholderia ambifaria MC40-6]
          Length = 466

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAE 77
              A +  R   +   AGSGKT  L +R+  L+  +   P  +        AA E
Sbjct: 174 AAAALNAGRPLLIHGPAGSGKTF-LAERLGALMGGHVPVPHAIY-------AAGE 220


>gi|15605384|ref|NP_220170.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           D/UW-3/CX]
 gi|255311477|ref|ZP_05354047.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 6276]
 gi|255317778|ref|ZP_05359024.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis 6276s]
 gi|3329101|gb|AAC68829.1| Exodeoxyribonuclease V, Alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|297748782|gb|ADI51328.1| Exodeoxyribonuclease V alpha chain [Chlamydia trachomatis D-EC]
 gi|297749662|gb|ADI52340.1| Exodeoxyribonuclease V alpha chain [Chlamydia trachomatis D-LC]
          Length = 496

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E I  +S+ +++ L     +  + V    G+GKT  L  +++RL+LA    + ++  + T
Sbjct: 132 EEIAQLSEEQNQVLKTVLNSCFSLVCGGPGTGKTF-LAVQMIRLILAQIPSAQIVVASPT 190

Query: 72  KAAAA 76
             A+A
Sbjct: 191 GKASA 195


>gi|314920397|gb|EFS84228.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3]
 gi|314956489|gb|EFT00777.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1]
 gi|314957333|gb|EFT01436.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1]
 gi|327452696|gb|EGE99350.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2]
 gi|328752852|gb|EGF66468.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2]
          Length = 1058

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 1   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|313827480|gb|EFS65194.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2]
          Length = 1058

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 1   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|296503349|ref|YP_003665049.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis BMB171]
 gi|296324401|gb|ADH07329.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis BMB171]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|289425545|ref|ZP_06427322.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|289154523|gb|EFD03211.1| UvrD/REP helicase [Propionibacterium acnes SK187]
          Length = 1058

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 1   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|315500708|ref|YP_004089509.1| conjugative relaxase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315418720|gb|ADU15358.1| conjugative relaxase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 1047

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 17  ISQTKSEQLLA----SDPTRSAWVSANAGSGKTHI--LVQRVLRLLLANAHPSTLLCLTH 70
           ++    +  +     +D  R + +  +AG+GKT    LV++ L  L A      ++ L  
Sbjct: 481 LAPNTQQAAVVQHVLTDGARYSVIHGSAGTGKTTTFDLVRQTLDRLSAGQI--EIVALAP 538

Query: 71  TKAAAAEMSHR 81
           T  A  E++ R
Sbjct: 539 THKAKGELADR 549


>gi|229167363|ref|ZP_04295101.1| UvrD/Rep helicase [Bacillus cereus AH621]
 gi|228615925|gb|EEK73012.1| UvrD/Rep helicase [Bacillus cereus AH621]
          Length = 700

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 172 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 231


>gi|76789391|ref|YP_328477.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis A/HAR-13]
 gi|237803081|ref|YP_002888275.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805002|ref|YP_002889156.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76167921|gb|AAX50929.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis A/HAR-13]
 gi|231273302|emb|CAX10217.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274315|emb|CAX11110.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436191|gb|ADH18365.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis G/9768]
 gi|296437120|gb|ADH19290.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis G/11222]
 gi|296438051|gb|ADH20212.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis G/11074]
 gi|297140553|gb|ADH97311.1| exodeoxyribonuclease V alpha chain [Chlamydia trachomatis G/9301]
          Length = 496

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           E I  +S+ +++ L     +  + V    G+GKT  L  +++RL+LA    + ++  + T
Sbjct: 132 EEIAQLSEEQNQVLKTVLNSCFSLVCGGPGTGKTF-LAVQMIRLILAQIPSAQIVVASPT 190

Query: 72  KAAAA 76
             A+A
Sbjct: 191 GKASA 195


>gi|330878708|gb|EGH12857.1| hypothetical protein PSYMP_22543 [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 487

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +        +   V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSCAKKLLVQAFAGTGKTTTLV 33


>gi|323497585|ref|ZP_08102602.1| ATP-dependent RNA helicase HrpA [Vibrio sinaloensis DSM 21326]
 gi|323317334|gb|EGA70328.1| ATP-dependent RNA helicase HrpA [Vibrio sinaloensis DSM 21326]
          Length = 1309

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL------LLANAHP 62
           ++ E +  +SQ K +   A +  +   ++   GSGKT  L +    L      L+ +  P
Sbjct: 84  DYPEIL-PVSQKKDDIAEAIENNQVVIIAGETGSGKTTQLPKICAELGRGKYGLIGHTQP 142

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             L   +     A EM  ++ E +      +D+I      K+       +++   R+L
Sbjct: 143 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISDNTQIKLMTDGILLAEIQHDRYL 200


>gi|312890213|ref|ZP_07749754.1| TRAG family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297325|gb|EFQ74453.1| TRAG family protein [Mucilaginibacter paludis DSM 18603]
          Length = 663

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
              P RS  VS +AGSGKT  +++  +   LA   P T+L 
Sbjct: 197 IVAPYRSTLVSGSAGSGKTSSILRFFISQALAKDDPYTMLI 237


>gi|307245193|ref|ZP_07527284.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254140|ref|ZP_07535985.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258604|ref|ZP_07540339.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853837|gb|EFM86051.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862840|gb|EFM94789.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867261|gb|EFM99114.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 1313

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 67/201 (33%), Gaps = 49/201 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL------- 120
            +     A E+  ++ E +      +D++    + K+       +++   R+L       
Sbjct: 145 RSVANRIAEELKSQMGETVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYLNQYDTLI 204

Query: 121 -----------------LITILETPGGLKV----QTIH------AFCEA-IM----QQFP 148
                            L  IL     LKV     TI        F  A I+    + FP
Sbjct: 205 IDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSRHFNNAPIIEVSGRTFP 264

Query: 149 LEANITSHFAIADEEQSKKLI 169
           +E        I +E+   +L 
Sbjct: 265 VEVRYRP---IVEEDDQDQLQ 282


>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 549

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTL--LCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL     A    +  L LT 
Sbjct: 22  DTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      + G  P    + K RH +  ++ TPG 
Sbjct: 82  TR----ELAAQVSESVETYG----KYLPLRSAVVFGGVPINPQIQKLRHGVDVLVATPGR 133

Query: 131 L 131
           L
Sbjct: 134 L 134


>gi|319653684|ref|ZP_08007782.1| UvrD/REP helicase [Bacillus sp. 2_A_57_CT2]
 gi|317394657|gb|EFV75397.1| UvrD/REP helicase [Bacillus sp. 2_A_57_CT2]
          Length = 778

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLC 67
           Q    +++  D  R   V   AGSGKT   +QR+  LL     N +   ++ 
Sbjct: 211 QQDQNRIIRHDRGRLLIVHGAAGSGKTSAALQRIAYLLYKDRDNLNAEQIIL 262


>gi|313837605|gb|EFS75319.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2]
 gi|314972544|gb|EFT16641.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3]
          Length = 1069

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D      V    G+G+T + ++   R + +    S +L L  T+ +A
Sbjct: 4   MHGWDDPQARVLADDADMVLVMGGPGTGRTSLCLEIAARHVASGGLLSDVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI--TILET 127
             +   ++  +         +    + +     P++  ++      + R LL    + + 
Sbjct: 64  QALRTALVRRLAGAHLEPQVMTVHALARRIVASPSRRLLTAPEQEFRMRELLAARDMSDW 123

Query: 128 PGGLK 132
           P  L+
Sbjct: 124 PDELR 128


>gi|257900057|ref|ZP_05679710.1| ATP-dependent DNA helicase [Enterococcus faecium Com15]
 gi|257837969|gb|EEV63043.1| ATP-dependent DNA helicase [Enterococcus faecium Com15]
          Length = 713

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 8   QEHSETIDLISQT-KSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           Q+ +  ++ I+ T +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 199 QDETNEMNAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 250


>gi|194227192|ref|XP_001917006.1| PREDICTED: F-box protein, helicase, 18 [Equus caballus]
          Length = 1080

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ S       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 476 IRLTHEQQLILSHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSESRFLYVTFNK 529


>gi|327259424|ref|XP_003214537.1| PREDICTED: intron-binding protein aquarius-like [Anolis
           carolinensis]
          Length = 1481

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  L  N      L +TH+  A  ++ 
Sbjct: 819 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNLYHNFPEQRTLIVTHSNQALNQLF 877

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      + +L   G L+
Sbjct: 878 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRLELLREVGRLQ 930


>gi|323694781|ref|ZP_08108938.1| DEAD/H associated domain-containing protein [Clostridium
          symbiosum WAL-14673]
 gi|323501165|gb|EGB17070.1| DEAD/H associated domain-containing protein [Clostridium
          symbiosum WAL-14673]
          Length = 810

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKT 45
           S+T  + ++ + E   A    +   VSA  G+GKT
Sbjct: 17 FSDTFGMPTRVQEEAWAAIAKDKDVLVSAPTGTGKT 52


>gi|322701017|gb|EFY92768.1| DNA-binding protein SMUBP-2 [Metarhizium acridum CQMa 102]
          Length = 724

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 5   NSFQEHSETIDL-ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           +S   H E ID  ++ ++ + +  A      A +    G+GKTH L++ +L+++      
Sbjct: 270 DSQLGHLEWIDPTLNDSQKDAIRFALASREIALIHGPPGTGKTHTLIELILQMVKRK--- 326

Query: 63  STLLC 67
             +L 
Sbjct: 327 QRILV 331


>gi|256786217|ref|ZP_05524648.1| ATP/GTP binding protein [Streptomyces lividans TK24]
 gi|289770108|ref|ZP_06529486.1| ATP/GTP binding protein [Streptomyces lividans TK24]
 gi|289700307|gb|EFD67736.1| ATP/GTP binding protein [Streptomyces lividans TK24]
          Length = 681

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ          S  V    G+GKT + + RV  LL
Sbjct: 178 DIVATIQPEQDEIVRAGLAGSVCVQGGPGTGKTAVGLHRVAYLL 221


>gi|227505041|ref|ZP_03935090.1| helicase [Corynebacterium striatum ATCC 6940]
 gi|227198405|gb|EEI78453.1| helicase [Corynebacterium striatum ATCC 6940]
          Length = 747

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           H E+I    Q + ++++  +      V    G+GKT + + RV  LL
Sbjct: 202 HMESIVETIQREQDEIIRDNTRGVLVVEGGPGTGKTAVALHRVAYLL 248


>gi|24375277|ref|NP_719320.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24350080|gb|AAN56764.1|AE015812_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 535

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 24/160 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 22  DTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKGHKAKSGQTRALVLTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      + G  P    ++K RH +  ++ TPG 
Sbjct: 82  TR----ELAAQVGESVETYG----KYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGR 133

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170
           L           ++QQ  ++ N      I   +++ ++++
Sbjct: 134 L---------LDLVQQNAVKFN---QLEILVLDEADRMLD 161


>gi|258543003|ref|YP_003188436.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634081|dbj|BAI00057.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637141|dbj|BAI03110.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640193|dbj|BAI06155.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643250|dbj|BAI09205.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646305|dbj|BAI12253.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649358|dbj|BAI15299.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652344|dbj|BAI18278.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655402|dbj|BAI21329.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 400

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 6   SFQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +   +++   + + T  +Q    A    R   V A  G+GKT      + + LL +  P 
Sbjct: 13  ALCAYAQQAGMAAPTPVQQAAIPAILDGRDVLVRAPTGTGKTAAYALPLSQKLLKSRKPR 72

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L L  T+    E+   VL++   +     E    +        P      +A      
Sbjct: 73  FVLVLVPTR----EL---VLQVEKVFRTCLGESKKGQKQTPVTLVPLFGGSDRAEQEHFL 125

Query: 124 ILETPGGLKVQT 135
              T   + + T
Sbjct: 126 AQATGRRILIAT 137


>gi|253574918|ref|ZP_04852258.1| UvrD/Rep helicase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845964|gb|EES73972.1| UvrD/Rep helicase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 720

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           ++Y     + +   D++S  ++EQ       ++    +   AGSGKT + + R+  LL
Sbjct: 164 LVYRLGENKDNRLRDIVSTIQAEQDRIIRAAKNTALIIQGVAGSGKTTVALHRLAFLL 221


>gi|291538234|emb|CBL11345.1| haloacid dehalogenase superfamily, subfamily IA, variant 3 with
           third motif having DD or ED/haloacid dehalogenase
           superfamily, subfamily IA, variant 1 with third motif
           having Dx(3-4)D or Dx(3-4)E [Roseburia intestinalis
           XB6B4]
          Length = 1261

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++I+  + EQ L     P  +  V   AGSGKT + + R+  +L
Sbjct: 409 EIIATIQKEQNLIIRRSPKTNIIVQGVAGSGKTTVAMHRISYIL 452


>gi|322417956|ref|YP_004197179.1| exodeoxyribonuclease V subunit alpha [Geobacter sp. M18]
 gi|320124343|gb|ADW11903.1| exodeoxyribonuclease V, alpha subunit [Geobacter sp. M18]
          Length = 599

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS------TLLCLTHT 71
           +  +    LA+   R   +S   G+GKT  +V+ VL LLL  +  +       +     T
Sbjct: 142 TDWQRIAALAAVTRRFCVISGGPGTGKTSTVVK-VLSLLLEQSEAAGTGNGLRIALAAPT 200

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             AAA +   +   +         ++  ++  + 
Sbjct: 201 GKAAARLKESISAGLDKADAGVRGLIPEDVFTLH 234


>gi|254476364|ref|ZP_05089750.1| ATPase [Ruegeria sp. R11]
 gi|214030607|gb|EEB71442.1| ATPase [Ruegeria sp. R11]
          Length = 512

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 42/166 (25%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP--------------STLLCLTHTKAAAAEMSHR---- 81
           AGSGKT +L +    L  A                   TL  L  T  AA+ +  R    
Sbjct: 51  AGSGKTLLLAELYKALENAGVDVVSGDYESRKKSEDRRTLAILAPTNKAASVLRLRGVPA 110

Query: 82  --VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQ 134
             +  I+    +  +    AE     G +P      +  + +A+         PG L   
Sbjct: 111 TTIHRILYTPVYDPEYEKIAEWLAGTGDQPEIEGLTEEALERAKAFYEKNKSIPGALA-- 168

Query: 135 TIHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                   +           +  PL+       ++ D+ Q + L E
Sbjct: 169 -----AAGLRGSDFITGWKRRDEPLDIGFIDEASMLDDRQFQDLKE 209


>gi|110678946|ref|YP_681953.1| hypothetical protein RD1_1640 [Roseobacter denitrificans OCh 114]
 gi|109455062|gb|ABG31267.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 466

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L +    +  A                  TL  L  T  AA+ +  R     
Sbjct: 7   AGSGKTLLLAELYKAIQEAGVDVVSGDYEPRKKRDRRTLAILAPTNKAASVLRLRGVPAT 66

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+    +  +    AE     G KP      ++ +++A          PG L    
Sbjct: 67  TIHRILYTPVYDPEYERIAEWLAGSGDKPETQALSEAALARAEAFYANNKSIPGALA--- 123

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           ++ PL+       ++ D+ Q + L E
Sbjct: 124 ----AAGLRGSDFITGWKRREEPLDIGFVDESSMLDDRQFEDLRE 164


>gi|71279869|ref|YP_270548.1| ATP-dependent helicase [Colwellia psychrerythraea 34H]
 gi|71145609|gb|AAZ26082.1| ATP-dependent helicase [Colwellia psychrerythraea 34H]
          Length = 647

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 27 ASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTK 72
          A D   S  V A  G+GKT   L+   L L     +P  ++  T TK
Sbjct: 42 AIDKQSSLIVEAGTGTGKTFAYLIPAFLSL--NPKNPKKIVVSTGTK 86


>gi|72161124|ref|YP_288781.1| superfamily protein I DNA/RNA helicase [Thermobifida fusca YX]
 gi|71914856|gb|AAZ54758.1| similar to Superfamily I DNA and RNA helicases and helicase
           subunits [Thermobifida fusca YX]
          Length = 1490

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 17  ISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           +   + ++ +A    +S    V    G+GKTH +   V  LL        +L  +HT  A
Sbjct: 377 LPSNQEQRSIAERLDQSHLVVVQGPPGTGKTHTIANLVTDLLAQG---KKVLITSHTARA 433

Query: 75  AAEMSHRVLEIITAW-------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
              +  ++ E I A           + E L   +  I  ++ + S   +++  +  + E 
Sbjct: 434 LRVLKEKLPEEIQALCVSRTGDGVEAQEELEKSVRAILERRSDFSP-KQSKKEIRRLEEH 492

Query: 128 PGGLK 132
               +
Sbjct: 493 LDKTR 497


>gi|87302915|ref|ZP_01085719.1| putative DNA helicase [Synechococcus sp. WH 5701]
 gi|87282411|gb|EAQ74370.1| putative DNA helicase [Synechococcus sp. WH 5701]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
                V  +AG+GKT + + R + L  +N     +L  T +   AA +  ++  +I    
Sbjct: 247 NGPTRVQGSAGTGKTVVALHRAVHLARSNPEV-RVLLTTFSDPLAALLQDKLHRLIQGEP 305

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHL----LITILETPGGLKV 133
           HL  E L     +  G++ + + + + R +    L  ++      ++
Sbjct: 306 HLL-ERLDVMAMQELGERMHTAQLGQPRLIAPEDLRALIHRHAPAEI 351


>gi|330719416|ref|ZP_08314016.1| superfamily I DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 790

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           ++   S +  ++   +++  + EQ      T+S   +V   AGSGKT  ++QRV  LL
Sbjct: 192 LMNALSGESSTKMKSIVTTIQKEQNKIIRNTKSDLLFVQGAAGSGKTAAVLQRVAYLL 249


>gi|330468703|ref|YP_004406446.1| Superfamily I DNA and RNA helicase-like protein [Verrucosispora
           maris AB-18-032]
 gi|328811674|gb|AEB45846.1| Superfamily I DNA and RNA helicase-like protein [Verrucosispora
           maris AB-18-032]
          Length = 767

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 11  SETIDLISQTKSEQLLAS-DPTRSA-WVSANAGSGKTHILVQRVLRLLLANA---HPSTL 65
           +   D++S  + EQ  A   P R    ++   G+GKT + + R   LL  N        +
Sbjct: 170 AHMRDIVSTIQREQDEAIRAPARGVTLITGGPGTGKTQVALHRAAYLLYTNRGRLTDGRI 229

Query: 66  LCL---T-HTK 72
           L +   T  T+
Sbjct: 230 LVVGPSTVFTR 240


>gi|322378801|ref|ZP_08053230.1| primosome assembly protein PriA [Helicobacter suis HS1]
 gi|321148831|gb|EFX43302.1| primosome assembly protein PriA [Helicobacter suis HS1]
          Length = 624

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           I+ +S  +++ L A  P +SA +  N GSGKT I +  +L  L  N
Sbjct: 111 INPLSFAQNQALEALKPHKSALLFGNTGSGKTQIYIHLILEKLQKN 156


>gi|322380650|ref|ZP_08054802.1| primosome assembly protein PriA [Helicobacter suis HS5]
 gi|321146972|gb|EFX41720.1| primosome assembly protein PriA [Helicobacter suis HS5]
          Length = 624

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           I+ +S  +++ L A  P +SA +  N GSGKT I +  +L  L  N
Sbjct: 111 INPLSFAQNQALEALKPHKSALLFGNTGSGKTQIYIHLILEKLQKN 156


>gi|317016919|gb|ADU85992.1| putative ATP-dependent DNA helicase [Dactylosporangium aurantiacum
           subsp. hamdenensis]
          Length = 783

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           + ++++ +D      V    G+GKT + + RV  LL A+  
Sbjct: 197 EQDEIIRADINGVLVVQGGPGTGKTAVALHRVAYLLYAHRD 237


>gi|313498841|gb|ADR60207.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 636

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT--- 87
             S  V   AG+GKT  L+ +  RLL     P   L L  T+     +  RV +      
Sbjct: 165 DESVAVQGFAGTGKTF-LIHQFARLL----EPQRTLLLALTEGQLRALQARVKDAAAYTA 219

Query: 88  -AWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFC 140
             +  L+DE+L+ ++T    +  +           +A+ +    +   G L  + + A C
Sbjct: 220 LTFGQLADELLNRDLTSNGWRLRDPYRTRLSWRPQEAQVVRWLAIPDIGPLAARDVVALC 279

Query: 141 EAIMQQFPLEAN 152
              ++ F   A+
Sbjct: 280 IRAVRTFCHSAD 291


>gi|229060485|ref|ZP_04197848.1| UvrD/Rep helicase [Bacillus cereus AH603]
 gi|228718868|gb|EEL70489.1| UvrD/Rep helicase [Bacillus cereus AH603]
          Length = 700

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 172 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 231


>gi|154150573|ref|YP_001404191.1| type III restriction enzyme, res subunit [Candidatus Methanoregula
           boonei 6A8]
 gi|153999125|gb|ABS55548.1| type III restriction enzyme, res subunit [Methanoregula boonei 6A8]
          Length = 893

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           +    D  R   V+   G+GKT+ +V    RL+ +      +L
Sbjct: 173 EQAIRDRKRQMLVAMATGTGKTYTMVNETFRLMESGVA-KRIL 214


>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 550

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 33  DTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLELLSKGQKAQAGQVRTLVLTP 92

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      + G  P    ++K RH +  ++ TPG 
Sbjct: 93  TR----ELAAQVAESVETYG----KYLPLRSAVVFGGVPINPQIAKLRHGVDVLVATPGR 144

Query: 131 L 131
           L
Sbjct: 145 L 145


>gi|313220481|emb|CBY31333.1| unnamed protein product [Oikopleura dioica]
          Length = 2021

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 15  DLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPST------LLC 67
           D+I +    Q + +    S   +    G+GKT  + +RV+++LL NA          +L 
Sbjct: 353 DMIVKDHQLQAIKAALQGSISIIQGPPGTGKTF-IAKRVMQVLLDNADHWYGQLKTPILL 411

Query: 68  LTHTKAA 74
           + +T  A
Sbjct: 412 ICYTNHA 418


>gi|291547605|emb|CBL20713.1| chromosomal replication initiator protein DnaA [Ruminococcus sp.
           SR1/5]
          Length = 455

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 29  DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT---HTK 72
           D     ++   AG GKTH L+  +   +L +   S +L +T    T 
Sbjct: 145 DTYNPLFIYGGAGLGKTH-LMHSIAHFILEHDENSRVLYVTSEEFTN 190


>gi|229196983|ref|ZP_04323723.1| UvrD/Rep helicase [Bacillus cereus m1293]
 gi|228586540|gb|EEK44618.1| UvrD/Rep helicase [Bacillus cereus m1293]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|223041768|ref|ZP_03611960.1| exodeoxyribonuclease V, alpha subunit [Actinobacillus minor 202]
 gi|223017419|gb|EEF15838.1| exodeoxyribonuclease V, alpha subunit [Actinobacillus minor 202]
          Length = 654

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 7   FQEHSETIDLISQTKSEQ-------LLASDPTRSAWVSANAGSGKTHILVQRVLRLL--- 56
            ++  + +D +     EQ       +  +   R   +S   G+GKT   V R+L  L   
Sbjct: 157 LEQDKKILDQLFGQAGEQIDWQKIAVATALRKRFCVISGGPGTGKTRT-VARLLAALQWK 215

Query: 57  --LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
                A    +  +  T  AAA +   +++ + +      
Sbjct: 216 QFEQGADFMKVALIAPTGKAAARLKESIIQNLASIEMPEK 255


>gi|254387012|ref|ZP_05002291.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
 gi|194345836|gb|EDX26802.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
          Length = 674

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 15  DLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           D+++  + EQ        + S  V    G+GKT + + RV  LL A+  
Sbjct: 169 DIVATIQPEQDEIVRSGLSGSVCVQGGPGTGKTAVGLHRVAYLLYAHRD 217


>gi|115700012|ref|XP_795541.2| PREDICTED: similar to MOV10-like 1 [Strongylocentrotus purpuratus]
 gi|115939362|ref|XP_001184534.1| PREDICTED: similar to MOV10-like 1 [Strongylocentrotus purpuratus]
          Length = 2020

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 16  LISQTKSEQLLAS-------DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
             ++  + Q  A               +    G+GKT  +V+ +L+ +  +   S +L  
Sbjct: 864 FNNKLNARQRSAVMRILKGEGRPTPYILFGPPGTGKTITVVETILQ-IHHHLPSSRILAC 922

Query: 69  THTKAAAAEMSHRVLE 84
           T + +AA  ++ R+ +
Sbjct: 923 TPSNSAADLLAERLHQ 938


>gi|324326780|gb|ADY22040.1| UvrD/Rep helicase family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|315648225|ref|ZP_07901326.1| hypothetical protein PVOR_23234 [Paenibacillus vortex V453]
 gi|315276871|gb|EFU40214.1| hypothetical protein PVOR_23234 [Paenibacillus vortex V453]
          Length = 775

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +   ++ +D TR   V   AGSGKT   +QRV  LL
Sbjct: 214 QKEQNAVIRNDKTRMLIVQGAAGSGKTSAALQRVAYLL 251


>gi|314927514|gb|EFS91345.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1]
          Length = 1066

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D      V    G+G+T + ++   R + +    S +L L  T+ +A
Sbjct: 1   MHGWDDPQARVLADDADMVLVMGGPGTGRTSLCLEIAARHVASGGLLSDVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI--TILET 127
             +   ++  +         +    + +     P++  ++      + R LL    + + 
Sbjct: 61  QALRTALVRRLAGAHLEPQVMTVHALARRIVASPSRRLLTAPEQEFRMRELLAARDMSDW 120

Query: 128 PGGLK 132
           P  L+
Sbjct: 121 PDELR 125


>gi|283777930|ref|YP_003368685.1| type II secretion system protein E [Pirellula staleyi DSM 6068]
 gi|283436383|gb|ADB14825.1| type II secretion system protein E [Pirellula staleyi DSM 6068]
          Length = 473

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 18/124 (14%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS----- 79
             A     +  VS   GSGKT +L      +L +   P   L    T   AAE+      
Sbjct: 209 AAAVQARLNILVSGGTGSGKTTLL-----NILSSFIQPDQRLV---TIEDAAELQLQQPH 260

Query: 80  -HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH----LLITILETPGGLKVQ 134
             R+           +      +      +P++  + + R      ++  + T     + 
Sbjct: 261 VARMETRPANLEGSGEVSARDLLRNALRMRPDRIIVGECRGGEALDMLQAMNTGHDGSLT 320

Query: 135 TIHA 138
           TIHA
Sbjct: 321 TIHA 324


>gi|228985906|ref|ZP_04146054.1| UvrD/Rep helicase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228773835|gb|EEM22253.1| UvrD/Rep helicase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|225351429|ref|ZP_03742452.1| hypothetical protein BIFPSEUDO_03024 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157773|gb|EEG71056.1| hypothetical protein BIFPSEUDO_03024 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 759

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +  D+++  ++EQ     +D  ++  V    G+GKT + + R   LL
Sbjct: 177 KMTDIVATIQAEQDRIIRADLNQAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|218233726|ref|YP_002367531.1| UvrD/Rep helicase family protein [Bacillus cereus B4264]
 gi|218161683|gb|ACK61675.1| UvrD/Rep helicase family protein [Bacillus cereus B4264]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 550

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 33  DTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLELLSKGQKAQAGQVRTLVLTP 92

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      + G  P    ++K RH +  ++ TPG 
Sbjct: 93  TR----ELAAQVAESVETYG----KYLPLRSAVVFGGVPINPQIAKLRHGVDVLVATPGR 144

Query: 131 L 131
           L
Sbjct: 145 L 145


>gi|329923154|ref|ZP_08278653.1| helicase IV [Paenibacillus sp. HGF5]
 gi|328941596|gb|EGG37882.1| helicase IV [Paenibacillus sp. HGF5]
          Length = 776

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +   ++ +D TR   V   AGSGKT   +QRV  LL
Sbjct: 214 QKEQNAVIRNDKTRMLIVQGAAGSGKTSAALQRVAYLL 251


>gi|327400519|ref|YP_004341358.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316027|gb|AEA46643.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 898

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT-- 71
           I+ +S+ + E        R+  + A  GSGKT   +  +L+ ++    P  +  +  T  
Sbjct: 15  IEKLSRLQEEAAKRVLEGRNLLIIAPTGSGKTEAAITPILQRMVEE-RPEGIALVYITPL 73

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +A   +M  R+  I         E L  +I    G         ++R     ++ TP  L
Sbjct: 74  RALNRDMLRRLKAI--------AEELGFKIAVRHGDTSQSERSKQSRKPPHILVTTPETL 125

Query: 132 KV 133
           ++
Sbjct: 126 QI 127


>gi|297302156|ref|XP_001116627.2| PREDICTED: f-box only protein 18-like [Macaca mulatta]
          Length = 150

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
               ++ A+ G+GKT  LV+            S  L +T    + A+ + RV 
Sbjct: 6  RGSPPFLLASPGTGKTSTLVK-----YAEKWSQSRFLYVTF-NKSIAKQAERVF 53


>gi|284166179|ref|YP_003404458.1| DNA replication factor Dna2 [Haloterrigena turkmenica DSM 5511]
 gi|284015834|gb|ADB61785.1| DNA replication factor Dna2 [Haloterrigena turkmenica DSM 5511]
          Length = 902

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 15/208 (7%)

Query: 7   FQEHSETIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           F+   ET    +  + E   LA      A +    G+GKT+ + + +  ++        +
Sbjct: 513 FEAIDETFIGNNDAQDEAVRLAVGAEDFALIHGPPGTGKTYTIARAIRAMVERG---ERV 569

Query: 66  LCLTHTKAAAAE-MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           L    T  A    +   + ++           + +E    +  +P + + +      +  
Sbjct: 570 LLSAFTNRAVDNALQALLEQLDDVVDDERVVRVGSESGVREDMEPYRLERAGDPEDRVAE 629

Query: 125 LETPGGLKVQTIHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------ST 176
           LE    +   T  A C   IM++   +A +    A   E  +      A++         
Sbjct: 630 LENAQVVAATT--ATCGSRIMKEQSFDAALVDEAAQLTEPGTHAATNLAERFVLVGDHEQ 687

Query: 177 LASIMLDNNEELKKAFYEILEISNDEDI 204
           L  ++   N+  +  F  ++++  D  +
Sbjct: 688 LPPVVRAENDLTESLFERLVDLHPDAGV 715


>gi|228921481|ref|ZP_04084804.1| UvrD/Rep helicase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228838254|gb|EEM83572.1| UvrD/Rep helicase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|228959044|ref|ZP_04120745.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228800705|gb|EEM47621.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229103417|ref|ZP_04234099.1| UvrD/Rep helicase [Bacillus cereus Rock3-28]
 gi|228679913|gb|EEL34108.1| UvrD/Rep helicase [Bacillus cereus Rock3-28]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229156391|ref|ZP_04284485.1| UvrD/Rep helicase [Bacillus cereus ATCC 4342]
 gi|228627068|gb|EEK83801.1| UvrD/Rep helicase [Bacillus cereus ATCC 4342]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|222096311|ref|YP_002530368.1| uvrd/rep helicase family protein [Bacillus cereus Q1]
 gi|221240369|gb|ACM13079.1| UvrD/Rep helicase family protein [Bacillus cereus Q1]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|206973756|ref|ZP_03234674.1| uvrD/Rep helicase family protein [Bacillus cereus H3081.97]
 gi|206747912|gb|EDZ59301.1| uvrD/Rep helicase family protein [Bacillus cereus H3081.97]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 525

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 33  DTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRALVLTP 92

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      I G  P    ++K RH +  ++ TPG 
Sbjct: 93  TR----ELAAQVAESVETYG----KNLPLRSAVIFGGVPINPQIAKLRHGVDVLVATPGR 144

Query: 131 L 131
           L
Sbjct: 145 L 145


>gi|159038643|ref|YP_001537896.1| putative helicase [Salinispora arenicola CNS-205]
 gi|157917478|gb|ABV98905.1| conserved hypothetical protein; putative helicase [Salinispora
           arenicola CNS-205]
          Length = 941

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 6/111 (5%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A        V    G+GKT  + +              +L  +HT  A   +  R+  
Sbjct: 281 RAALTVPDLLLVLGPPGTGKTRTITEIAAGCAEGG---QRVLVTSHTNRAVDNVLERLPP 337

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
            + A    +++ ++   T  +G        +  + +L     T   L   T
Sbjct: 338 DVRAVRVGNEDTMT---THARGFMVETQVEALRQEILAATAGTASRLATFT 385


>gi|47567625|ref|ZP_00238335.1| superfamily I DNA helicase [Bacillus cereus G9241]
 gi|47555602|gb|EAL13943.1| superfamily I DNA helicase [Bacillus cereus G9241]
          Length = 673

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|293610144|ref|ZP_06692445.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827376|gb|EFF85740.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124318|gb|ADY83841.1| putative DNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 500

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A E
Sbjct: 12 EQAIAIDNGRLGQSFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIAGE 64


>gi|228915411|ref|ZP_04079004.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228844354|gb|EEM89412.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229173462|ref|ZP_04301006.1| UvrD/Rep helicase [Bacillus cereus MM3]
 gi|228610156|gb|EEK67434.1| UvrD/Rep helicase [Bacillus cereus MM3]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|206971777|ref|ZP_03232726.1| UvrD/Rep helicase family protein [Bacillus cereus AH1134]
 gi|206733162|gb|EDZ50335.1| UvrD/Rep helicase family protein [Bacillus cereus AH1134]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|217960251|ref|YP_002338811.1| uvrD/Rep helicase family protein [Bacillus cereus AH187]
 gi|217062949|gb|ACJ77199.1| uvrD/Rep helicase family protein [Bacillus cereus AH187]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|49477866|ref|YP_036897.1| UvrD/Rep helicase family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|301054335|ref|YP_003792546.1| UvrD/Rep helicase family protein [Bacillus anthracis CI]
 gi|49329422|gb|AAT60068.1| UvrD/Rep helicase family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|300376504|gb|ADK05408.1| UvrD/Rep helicase family protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|307243267|ref|ZP_07525438.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493395|gb|EFM65377.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 593

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAA 76
           +AS    +  +   +G+GK+ I++ RV++L  +  +P    L LT TK  A 
Sbjct: 204 IASVNYGNHAIVGGSGTGKSAIMLGRVIKL--SKIYPHHNFLILTFTKQQAN 253


>gi|153853187|ref|ZP_01994596.1| hypothetical protein DORLON_00581 [Dorea longicatena DSM 13814]
 gi|149753973|gb|EDM63904.1| hypothetical protein DORLON_00581 [Dorea longicatena DSM 13814]
          Length = 680

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           Q +   ++ +   R   +   AGSGKT + + R+  LL     +   S +L L
Sbjct: 205 QKEQNAIIRNTHDRILAIQGAAGSGKTSVALHRIAYLLYHDREHLKSSNVLIL 257


>gi|126010667|gb|AAI33634.1| IGHMBP2 protein [Bos taurus]
          Length = 334

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 23/154 (14%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +  ++ E +L A      A +    G+GKT  +V+ +L+ +      S +LC   +  A 
Sbjct: 189 LDASQQEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKRG---SKVLCCAPSNVAV 245

Query: 76  AEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
             +  R+ +       +   + L D I    +  +  +  +   ++  R  +     +  
Sbjct: 246 DNLVERLAQWKQRILRLGHPARLLDSIQQHSLDAVLARSDSARIVADIRRDIDQAWVSSS 305

Query: 130 GLKVQTIHAFCEAI-----MQQFPLEANITSHFA 158
            L        C  +     ++  P  + I   F+
Sbjct: 306 RL--------CLLLVWLSDLRSLPGVSGILLGFS 331


>gi|42781896|ref|NP_979143.1| uvrD/Rep helicase family protein [Bacillus cereus ATCC 10987]
 gi|42737820|gb|AAS41751.1| uvrD/Rep helicase family protein [Bacillus cereus ATCC 10987]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|254498306|ref|ZP_05111046.1| LvhB11 [Legionella drancourtii LLAP12]
 gi|254352468|gb|EET11263.1| LvhB11 [Legionella drancourtii LLAP12]
          Length = 321

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           EQ +A+   R+  V    GSGKT  LV  ++  ++ +A    +  +
Sbjct: 143 EQAVAAH--RNILVIGGTGSGKT-TLVNAIINEMVIHAPQERIFII 185


>gi|188588307|ref|YP_001921188.1| LexA repressor [Clostridium botulinum E3 str. Alaska E43]
 gi|188498588|gb|ACD51724.1| LexA repressor [Clostridium botulinum E3 str. Alaska E43]
          Length = 513

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 23/192 (11%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA--- 74
           + ++++A+ P   + +    GSGKT + V ++  LLL +  P     +L +T+   +   
Sbjct: 6   EQKRIIANKPNGHSLIKGVVGSGKTTVAVNKI-PLLLRHYCPEKDDKVLMITY-NKSLKQ 63

Query: 75  -AAEMSHRVLEIITAWSHLSDE--ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             + + +++ + I    +L DE   L   I +I        +  K  + L+  + T    
Sbjct: 64  YVSNIYNKIKDNINIQVNLFDEDNSLKLSIERIDDILIYYFNKYKKENNLMLDIATRKEC 123

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-- 189
           K+         ++      +++ +   I D +  + + EE     + +   +N EE +  
Sbjct: 124 KI--------ELINAISFVSSLYNDVEIIDPKYFQFIKEEIMW--IKACNYNNLEEYQSV 173

Query: 190 KAFYEILEISND 201
                I  + ND
Sbjct: 174 DRIGRISNLKND 185


>gi|170107161|ref|XP_001884791.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640353|gb|EDR04619.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 526

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 12  ETIDLISQTKSEQLLAS------DPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPST 64
           +  + + Q+   QLLA        P    +V     G+GKT  +V+ +L+LL +N   + 
Sbjct: 30  KMFNSLIQSNQPQLLAVKSIVNQTPGSPPFVVFGPPGTGKTITIVEAMLQLLRSNPQ-AR 88

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L    + +AA  ++ R+   +           S    ++       +      H  + I
Sbjct: 89  VLACAPSNSAADLIAERLSAGLNTDQLFRFVAPSRSSNQVPDAVKPYTYTKLDGHFSVPI 148

Query: 125 LETPGGLKV 133
           +      K+
Sbjct: 149 MPRMKAFKI 157


>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 522

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 87/259 (33%), Gaps = 49/259 (18%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVLRLLLA------NAHPSTL 65
           +   S T  +Q           + A A  G+GKT      +L+ LL              
Sbjct: 19  LGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLLTMPPAPGGKRVVRA 78

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           L LT T+    E++ +V E + A+     + L  + T + G       +   R  +  ++
Sbjct: 79  LILTPTR----ELAAQVEESVRAYG----KYLKLKSTVMFGGVGINPQIDALRRGVDIVV 130

Query: 126 ETPGGL----KVQTIH------------------AFCEAIMQQFPLEANITSH-----FA 158
            TPG L    + +TI                    F   I +   + A +        F+
Sbjct: 131 ATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKR---VLAKLPPKRQNLLFS 187

Query: 159 IADEEQSKKLIEEAKKS-TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217
               ++ K L +    +  L  +   N     +   + +   + +    L++ +I     
Sbjct: 188 ATFSDEIKALADSLLDAPALIEVARRN--TTAETVAQKIHPVDRDRKRELLTHLIKQHNW 245

Query: 218 LKLIFFFFSYLWRRKIIEK 236
            +++ F  +     ++ E+
Sbjct: 246 FQVLVFTRTKHGANRLAEQ 264


>gi|315653228|ref|ZP_07906151.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
 gi|315489391|gb|EFU79030.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
          Length = 769

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  +++ +      +V  +AGSGKT  ++QR+  LL
Sbjct: 217 QREQNKIIRNTTAGLLFVQGSAGSGKTSAILQRIAYLL 254


>gi|291535738|emb|CBL08850.1| haloacid dehalogenase superfamily, subfamily IA, variant 3 with
           third motif having DD or ED/haloacid dehalogenase
           superfamily, subfamily IA, variant 1 with third motif
           having Dx(3-4)D or Dx(3-4)E [Roseburia intestinalis
           M50/1]
          Length = 1261

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++I+  + EQ L     P  +  V   AGSGKT + + R+  +L
Sbjct: 409 EIIATIQKEQNLIIRRSPKTNIIVQGVAGSGKTTVAMHRISYIL 452


>gi|260435768|ref|ZP_05789738.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Synechococcus
           sp. WH 8109]
 gi|260413642|gb|EEX06938.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Synechococcus
           sp. WH 8109]
          Length = 526

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR 54
             E  D ++  +   + A D      +S   G+GKT  +V+ + R
Sbjct: 117 DPELSDRLNADQCAAVRALDQASVVLLSGGPGTGKTSTVVEILAR 161


>gi|229128152|ref|ZP_04257134.1| UvrD/Rep helicase [Bacillus cereus BDRD-Cer4]
 gi|228655427|gb|EEL11283.1| UvrD/Rep helicase [Bacillus cereus BDRD-Cer4]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|225439166|ref|XP_002268303.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1366

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 15  DLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           + +  T ++ +  +   +     V    G+GKT   VQ +L +L  N      L +TH+ 
Sbjct: 684 NSVRFTPTQIVAINSGIQPGLTMVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSN 742

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            A  ++  ++++         D      +   QG++   +D+  +R 
Sbjct: 743 QALNDLFEKIMQR--------DVPARYLLRLGQGEQELATDLDFSRQ 781


>gi|196041728|ref|ZP_03109019.1| uvrD/Rep helicase family protein [Bacillus cereus NVH0597-99]
 gi|196027497|gb|EDX66113.1| uvrD/Rep helicase family protein [Bacillus cereus NVH0597-99]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|167031219|ref|YP_001666450.1| fusaric acid resistance protein region [Pseudomonas putida GB-1]
 gi|166857707|gb|ABY96114.1| Fusaric acid resistance protein conserved region [Pseudomonas
           putida GB-1]
          Length = 695

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T   A E+  R++ ++     L D +++ E          +  +  AR  L    ++P  
Sbjct: 228 TVKNARELRGRMIHLLPVIDALDDALVALEGRAPAQFAQLQPVLEAAREWLKGTADSPSV 287

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE--EAKKS--TLASIMLDNNE 186
            +  T+H   E I +  P  A +     +       +L E  +  +   TL   +  ++ 
Sbjct: 288 ARWTTLH---EQIDRLQPGAAALDQRAELLLSNALYRLTEWADLWQDCCTLQHALRTDDA 344

Query: 187 ELKKAFYEILEISNDEDI 204
           +  +A Y    +      
Sbjct: 345 KPWRAVYRHWRLGRLTAF 362


>gi|322830523|gb|EFZ33517.1| PIF1 helicase-like protein, putative [Trypanosoma cruzi]
          Length = 783

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 8   QEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           +  + + + +S T  +          R+ +++ +AG+GKT  L    L LL      +  
Sbjct: 218 ERVAPSKEGVSWTVEQVRAVQLVRTGRNVFLTGSAGTGKTAWL----LHLLQHVLSGTEG 273

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +  T    A   ++ R++  +T ++            KI  +  ++ ++ +A     T++
Sbjct: 274 VVAT----ATTGIAARIIGGLTIYAFSGIGRGDGSFDKIYRRVKSRPEVVRAWRQCKTLI 329


>gi|302186787|ref|ZP_07263460.1| putative DNA helicase [Pseudomonas syringae pv. syringae 642]
          Length = 701

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PST-LLCLTHTKAAAAEMS 79
             +L+  D      V+  AG+GKT + + R  RL    +  P   +L  T TK  A ++ 
Sbjct: 247 QRKLVERDWNGPVKVTGGAGTGKTVVAMHRAARLARQYSDLPGRPVLFTTFTKTLAEDIR 306

Query: 80  HRVL-----EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
             +      + +     ++ +  ++ + +  G   N       R      
Sbjct: 307 QHLALLCTPQELEKIQVVNLDQWASSLLRRFGYPHNLLYNEGDRRRFWQA 356


>gi|296085879|emb|CBI31203.3| unnamed protein product [Vitis vinifera]
          Length = 1239

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 15  DLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           + +  T ++ +  +   +     V    G+GKT   VQ +L +L  N      L +TH+ 
Sbjct: 696 NSVRFTPTQIVAINSGIQPGLTMVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSN 754

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
            A  ++  ++++         D      +   QG++   +D+  +R 
Sbjct: 755 QALNDLFEKIMQR--------DVPARYLLRLGQGEQELATDLDFSRQ 793


>gi|240147322|ref|ZP_04745923.1| UvrD/Rep helicase family protein [Roseburia intestinalis L1-82]
 gi|257200497|gb|EEU98781.1| UvrD/Rep helicase family protein [Roseburia intestinalis L1-82]
          Length = 1013

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++I+  + EQ L     P  +  V   AGSGKT + + R+  +L
Sbjct: 156 EIIATIQKEQNLIIRRSPKTNIIVQGVAGSGKTTVAMHRISYIL 199


>gi|229080001|ref|ZP_04212532.1| UvrD/Rep helicase [Bacillus cereus Rock4-2]
 gi|228703380|gb|EEL55835.1| UvrD/Rep helicase [Bacillus cereus Rock4-2]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229091818|ref|ZP_04223016.1| UvrD/Rep helicase [Bacillus cereus Rock3-42]
 gi|228691546|gb|EEL45301.1| UvrD/Rep helicase [Bacillus cereus Rock3-42]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229190910|ref|ZP_04317901.1| UvrD/Rep helicase [Bacillus cereus ATCC 10876]
 gi|228592578|gb|EEK50406.1| UvrD/Rep helicase [Bacillus cereus ATCC 10876]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|25013980|ref|NP_733941.1| methyltransferase/helicase-like protein [Sweet potato chlorotic stunt
            virus]
          Length = 1491

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 13   TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
             ++ ++  K  QL      +  + +   G+GKT  +V    RL          L LT TK
Sbjct: 1167 ALEYLTVDKIPQLARDLTKKVTFYNKPPGAGKTTTIVNEFSRLHNEG---KRCLALTCTK 1223

Query: 73   AAAAEMSHRVLEI 85
            A   E++ ++   
Sbjct: 1224 AGKVEIAEKLRAR 1236


>gi|22550318|ref|NP_689396.1| polyprotein [Sweet potato chlorotic stunt virus]
 gi|22535414|emb|CAD21942.1| polyprotein [Sweet potato chlorotic stunt virus]
          Length = 2492

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 13   TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
             ++ ++  K  QL      +  + +   G+GKT  +V    RL          L LT TK
Sbjct: 1663 ALEYLTVDKIPQLARDLTKKVTFYNKPPGAGKTTTIVNEFSRLHNEG---KRCLALTCTK 1719

Query: 73   AAAAEMSHRVLEI 85
            A   E++ ++   
Sbjct: 1720 AGKVEIAEKLRAR 1732


>gi|300788815|ref|YP_003769106.1| ATP-dependent helicase HrpA [Amycolatopsis mediterranei U32]
 gi|299798329|gb|ADJ48704.1| ATP-dependent helicase HrpA [Amycolatopsis mediterranei U32]
          Length = 1302

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHIL------VQRVLRLLLANAHPSTLLCLTH 70
           +S+ K E   A D  +   V+   GSGKT  L      + R +R  + +  P  L   T 
Sbjct: 74  VSKLKDEIAAAIDKHQVVIVAGETGSGKTTQLPKICLELGRGIRGQIGHTQPRRLAARTV 133

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
               A+E+   + E +      +D+     + K+       +++   R L
Sbjct: 134 ADRIASELKTELGETVGYKVRFTDQSGQDTLVKLMTDGILLAEIQTDRSL 183


>gi|291528248|emb|CBK93834.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 1044

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++I+  + EQ L     P  +  V   AGSGKT + + R+  +L
Sbjct: 196 EIIATIQKEQNLIIRRSPKTNIIVQGVAGSGKTTVAMHRISYIL 239


>gi|291525646|emb|CBK91233.1| Superfamily I DNA and RNA helicases [Eubacterium rectale DSM 17629]
          Length = 1043

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++I+  + EQ L     P  +  V   AGSGKT + + R+  +L
Sbjct: 195 EIIATIQKEQNLIIRRSPKTNIIVQGVAGSGKTTVAMHRISYIL 238


>gi|228965754|ref|ZP_04126833.1| UvrD/Rep helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228793955|gb|EEM41479.1| UvrD/Rep helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229110262|ref|ZP_04239836.1| UvrD/Rep helicase [Bacillus cereus Rock1-15]
 gi|228673248|gb|EEL28518.1| UvrD/Rep helicase [Bacillus cereus Rock1-15]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229151022|ref|ZP_04279233.1| UvrD/Rep helicase [Bacillus cereus m1550]
 gi|228632582|gb|EEK89200.1| UvrD/Rep helicase [Bacillus cereus m1550]
          Length = 691

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|226951842|ref|ZP_03822306.1| DNA helicase [Acinetobacter sp. ATCC 27244]
 gi|226837382|gb|EEH69765.1| DNA helicase [Acinetobacter sp. ATCC 27244]
          Length = 502

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A+E
Sbjct: 12 EQAIAIDNARLGQSFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIASE 64


>gi|225864787|ref|YP_002750165.1| uvrD/Rep helicase family protein [Bacillus cereus 03BB102]
 gi|225789811|gb|ACO30028.1| uvrD/Rep helicase family protein [Bacillus cereus 03BB102]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|261408071|ref|YP_003244312.1| hypothetical protein GYMC10_4279 [Paenibacillus sp. Y412MC10]
 gi|261284534|gb|ACX66505.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
          Length = 776

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +   ++ +D TR   V   AGSGKT   +QRV  LL
Sbjct: 214 QKEQNAVIRNDKTRMLIVQGAAGSGKTSAALQRVAYLL 251


>gi|196032231|ref|ZP_03099645.1| uvrD/Rep helicase family protein [Bacillus cereus W]
 gi|228946425|ref|ZP_04108746.1| UvrD/Rep helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|195994982|gb|EDX58936.1| uvrD/Rep helicase family protein [Bacillus cereus W]
 gi|228813288|gb|EEM59588.1| UvrD/Rep helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|118478166|ref|YP_895317.1| UvrD/Rep helicase family protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417391|gb|ABK85810.1| UvrD/Rep helicase family protein [Bacillus thuringiensis str. Al
           Hakam]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|30262784|ref|NP_845161.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Ames]
 gi|47528107|ref|YP_019456.1| uvrD/Rep helicase family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185630|ref|YP_028882.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Sterne]
 gi|165868630|ref|ZP_02213290.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0488]
 gi|167632054|ref|ZP_02390381.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0442]
 gi|167637753|ref|ZP_02396032.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0193]
 gi|170685260|ref|ZP_02876484.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0465]
 gi|170704544|ref|ZP_02895010.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0389]
 gi|177649244|ref|ZP_02932246.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0174]
 gi|227814374|ref|YP_002814383.1| uvrD/Rep helicase family protein [Bacillus anthracis str. CDC 684]
 gi|229122362|ref|ZP_04251576.1| UvrD/Rep helicase [Bacillus cereus 95/8201]
 gi|229600984|ref|YP_002867089.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0248]
 gi|254685377|ref|ZP_05149237.1| uvrD/Rep helicase family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254737832|ref|ZP_05195535.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742994|ref|ZP_05200679.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Kruger B]
 gi|254752147|ref|ZP_05204184.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Vollum]
 gi|254760666|ref|ZP_05212690.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Australia
           94]
 gi|30257416|gb|AAP26647.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Ames]
 gi|47503255|gb|AAT31931.1| uvrD/Rep helicase family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179557|gb|AAT54933.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Sterne]
 gi|164715356|gb|EDR20873.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0488]
 gi|167514302|gb|EDR89669.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0193]
 gi|167532352|gb|EDR94988.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0442]
 gi|170130345|gb|EDS99206.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0389]
 gi|170670620|gb|EDT21359.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0465]
 gi|172084318|gb|EDT69376.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0174]
 gi|227003245|gb|ACP12988.1| uvrD/Rep helicase family protein [Bacillus anthracis str. CDC 684]
 gi|228661211|gb|EEL16837.1| UvrD/Rep helicase [Bacillus cereus 95/8201]
 gi|229265392|gb|ACQ47029.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0248]
          Length = 689

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|300853400|ref|YP_003778384.1| hypothetical protein CLJU_c01920 [Clostridium ljungdahlii DSM
           13528]
 gi|300433515|gb|ADK13282.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 1361

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 7   FQEHSETIDLISQTKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +++ S+ +       SEQ              V    G+GK+H +V  +  LL       
Sbjct: 260 WKDVSDNLLFPLPANSEQKSIVKKICENYGVVVQGPPGTGKSHTIVNLICHLLANG---K 316

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAW 89
            +L  + T  A   ++ ++ E I   
Sbjct: 317 KILVTSQTSRALKVLTEKIPEEIRPL 342


>gi|296455999|gb|ADH22234.1| type III restriction enzyme, res subunit [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 172

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           A  GSGKT +++  + +L+    +P+     + +T    + AE+  ++ + +  +    D
Sbjct: 30  APTGSGKTFMMINAIDKLIT--TYPNEKFTFVIVT---LSTAELPKQLYDNLNDYKQYLD 84

Query: 95  EILSAEITK------IQGKKPNKSDMSKARHLLITILETPGGLKVQT----IHAF 139
             ++ E  +       + K  +    +K  ++LI   ++ G  ++ T    IH+F
Sbjct: 85  NNITIEYQESPSSSNSKLKDQHFQIKAKQNNVLILGTQSFGKNRIFTEQGIIHSF 139


>gi|124009813|ref|ZP_01694482.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123984221|gb|EAY24577.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 1129

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           + L A D      +    G+GKT  ++ +++  L  +     +  L  T  A  E+  ++
Sbjct: 725 QALAAQDY---FLLQGPPGTGKTSAMLAQMVNHLFHHTE-ENIFLLAFTNRAVDEICKKI 780

Query: 83  L 83
            
Sbjct: 781 Y 781


>gi|170722068|ref|YP_001749756.1| hypothetical protein PputW619_2895 [Pseudomonas putida W619]
 gi|169760071|gb|ACA73387.1| conserved hypothetical protein [Pseudomonas putida W619]
          Length = 637

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +Y  S        D  ++   E L   D   S  V   AG+GKT  L+ +  RLL     
Sbjct: 139 VYLPSLASDLMLSDQQNRLLREFLSGVD--ESVAVQGFAGTGKTF-LIHQFARLL----D 191

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIIT----AWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           P   L L  T+     +  RV +        +  L+DEIL+ ++T    +  +      +
Sbjct: 192 PQRTLLLALTEGQLRALRARVKDAEAYTAMTFGQLADEILNRDLTSNGWRLRDPYRTKLS 251

Query: 118 RH 119
             
Sbjct: 252 WR 253


>gi|50547515|ref|XP_501227.1| YALI0B22572p [Yarrowia lipolytica]
 gi|74660077|sp|Q6CDN5|DBP6_YARLI RecName: Full=ATP-dependent RNA helicase DBP6
 gi|49647093|emb|CAG83480.1| YALI0B22572p [Yarrowia lipolytica]
          Length = 607

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
              ++LLA D      VSA+ GSGKT      ++  L     P  +  +
Sbjct: 223 LAQQKLLAPDRKPDLLVSASTGSGKTATYGIPIIEKLRDRIVP-RIRAV 270


>gi|70989597|ref|XP_749648.1| NF-X1 finger and helicase domain protein [Aspergillus fumigatus
           Af293]
 gi|66847279|gb|EAL87610.1| NF-X1 finger and helicase domain protein, putative [Aspergillus
           fumigatus Af293]
          Length = 1914

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NAHP 62
           + + + T+D     ++  L+ S   R   +    G+GK++  V  +  LL        + 
Sbjct: 587 YLQRNSTLD---WAQARALVNSLQHRIGLIQGPPGTGKSYTGVALIQVLLANKKQGKTNL 643

Query: 63  STLLCLTHTKAA 74
             +LC+T+T  A
Sbjct: 644 GPMLCVTYTNHA 655


>gi|306822420|ref|ZP_07455798.1| superfamily I DNA and RNA helicase [Bifidobacterium dentium ATCC
           27679]
 gi|309802472|ref|ZP_07696578.1| DNA/RNA helicase, family I [Bifidobacterium dentium JCVIHMP022]
 gi|304553965|gb|EFM41874.1| superfamily I DNA and RNA helicase [Bifidobacterium dentium ATCC
           27679]
 gi|308220872|gb|EFO77178.1| DNA/RNA helicase, family I [Bifidobacterium dentium JCVIHMP022]
          Length = 759

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +  D+++  ++EQ     +D  ++  V    G+GKT + + R   LL
Sbjct: 177 KMTDIVATIQAEQDRIIRADLNQAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|288918621|ref|ZP_06412970.1| Superfamily I DNA and RNA helicase-like protein [Frankia sp. EUN1f]
 gi|288350021|gb|EFC84249.1| Superfamily I DNA and RNA helicase-like protein [Frankia sp. EUN1f]
          Length = 868

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 15  DLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           D++S  ++EQ     +D      V    G+GKT + + R   LL  +  
Sbjct: 204 DIVSTLQAEQDRIIRADANAVLVVDGGPGTGKTAVALHRAAYLLYTHRD 252


>gi|238923543|ref|YP_002937059.1| UvrD/Rep helicase family protein [Eubacterium rectale ATCC 33656]
 gi|238875218|gb|ACR74925.1| UvrD/Rep helicase family protein [Eubacterium rectale ATCC 33656]
          Length = 1046

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++I+  + EQ L     P  +  V   AGSGKT + + R+  +L
Sbjct: 196 EIIATIQKEQNLIIRRSPKTNIIVQGVAGSGKTTVAMHRISYIL 239


>gi|229179097|ref|ZP_04306454.1| UvrD/Rep helicase [Bacillus cereus 172560W]
 gi|228604465|gb|EEK61929.1| UvrD/Rep helicase [Bacillus cereus 172560W]
          Length = 691

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|225679961|gb|EEH18245.1| DNA-binding protein SMUBP-2 [Paracoccidioides brasiliensis Pb03]
          Length = 753

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 13  TIDLISQT----KSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           TID I  T    + E +  A      A +    G+GKT+ L++ +L+LL  N
Sbjct: 250 TIDFIDPTLNDSQREAIRFALASREIALIHGPPGTGKTYTLIELILQLLRRN 301


>gi|159129055|gb|EDP54169.1| NF-X1 finger and helicase domain protein, putative [Aspergillus
           fumigatus A1163]
          Length = 1914

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NAHP 62
           + + + T+D     ++  L+ S   R   +    G+GK++  V  +  LL        + 
Sbjct: 587 YLQRNSTLD---WAQARALVNSLQHRIGLIQGPPGTGKSYTGVALIQVLLANKKQGKTNL 643

Query: 63  STLLCLTHTKAA 74
             +LC+T+T  A
Sbjct: 644 GPMLCVTYTNHA 655


>gi|190565609|ref|ZP_03018529.1| uvrD/Rep helicase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|190563636|gb|EDV17601.1| uvrD/Rep helicase family protein [Bacillus anthracis
           Tsiankovskii-I]
          Length = 689

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|152990986|ref|YP_001356708.1| DNA/RNA helicase [Nitratiruptor sp. SB155-2]
 gi|151422847|dbj|BAF70351.1| DNA/RNA helicase [Nitratiruptor sp. SB155-2]
          Length = 726

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           ++  E +  ++++++E +  +  +    +    G+GKT  L++ +L+ +      + +L 
Sbjct: 231 KQSFEVVTKLNESQNEAVQKALGSEVFLIHGPPGTGKTSTLIELILQEVKRG---NKVLA 287

Query: 68  LTHTKAAAAEMSHRV 82
              +  A   M  R+
Sbjct: 288 TADSNTAVDNMLQRL 302


>gi|148676083|gb|EDL08030.1| F-box protein 18, isoform CRA_a [Mus musculus]
          Length = 1052

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 448 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTFNK 501


>gi|148676084|gb|EDL08031.1| F-box protein 18, isoform CRA_b [Mus musculus]
          Length = 896

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 439 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTFNK 492


>gi|74190742|dbj|BAE28165.1| unnamed protein product [Mus musculus]
          Length = 1042

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 438 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTFNK 491


>gi|26350255|dbj|BAC38767.1| unnamed protein product [Mus musculus]
          Length = 821

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 364 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTFNK 417


>gi|21703350|ref|NP_056607.1| F-box only protein 18 [Mus musculus]
 gi|45476942|sp|Q8K2I9|FBX18_MOUSE RecName: Full=F-box only protein 18; AltName: Full=F-box DNA
           helicase 1
 gi|21595114|gb|AAH31393.1| F-box protein 18 [Mus musculus]
 gi|122889557|emb|CAM13741.1| F-box protein 18 [Mus musculus]
 gi|123232820|emb|CAM20365.1| F-box protein 18 [Mus musculus]
 gi|148676085|gb|EDL08032.1| F-box protein 18, isoform CRA_c [Mus musculus]
          Length = 1042

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 438 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTFNK 491


>gi|324324966|gb|ADY20226.1| hypothetical protein YBT020_04900 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 588

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 35/124 (28%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAE 77
             + E+     P     V+   GSGKT +L+ R + L+    HP   +  LT+ ++    
Sbjct: 210 DAEQERFAKRVPYGHYMVTGVPGSGKTVLLLARAIHLVRE--HPEWKIKILTYNRS---- 263

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  ++   + +        L+A++  +  +  N                    + V T H
Sbjct: 264 LKTKIENKLNS--------LAADLAFMNVRLEN--------------------IDVSTFH 295

Query: 138 AFCE 141
            F  
Sbjct: 296 KFAL 299


>gi|297696246|ref|XP_002825312.1| PREDICTED: LOW QUALITY PROTEIN: intron-binding protein aquarius-like
            [Pongo abelii]
          Length = 1580

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20   TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 900  TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 958

Query: 80   HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 959  EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 1011


>gi|228934086|ref|ZP_04096927.1| UvrD/Rep helicase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228825600|gb|EEM71392.1| UvrD/Rep helicase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 689

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|298530988|ref|ZP_07018389.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509011|gb|EFI32916.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 637

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 12  ETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLL 66
              D+IS    EQ  L+  +     +++  AGSGKT + + R+  LL        P   L
Sbjct: 202 RLTDIISLISPEQFSLITREHEGCFYLTGGAGSGKTTVALHRLSYLLYNYPDRFRPQRCL 261

Query: 67  CLTHTK 72
            +   +
Sbjct: 262 VVMFNR 267


>gi|198283454|ref|YP_002219775.1| P-type conjugative transfer ATPase TrbB [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198247975|gb|ACH83568.1| P-type conjugative transfer ATPase TrbB [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 322

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 29/186 (15%)

Query: 27  ASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           A    ++  VS   GSGKT +   L+ R+ +L         ++ +  T+    E+     
Sbjct: 149 AVLSRKNILVSGGTGSGKTTLANALIDRISKLSDIGT---RIVIIEDTR----ELQCTAP 201

Query: 84  EIITAWSHLSDEILSAEITKIQGK-KPNK----SDMSKARHLLITILETPGGLKVQTIHA 138
            +I   +     I    + K+  + +P++        KA   L+    T     + T+HA
Sbjct: 202 NVIQFLTDDDAGIDMTRLLKLTLRYRPDRILVGEVRDKAALALLKAWNTGHPGGIATLHA 261

Query: 139 FC--EAIMQ--QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
                A+++  Q   EA + +          + LI EA    L  I  D N    +    
Sbjct: 262 NNPEAALLRLDQLCQEAGVPA---------QQTLIHEAVDIVL-QIARDPNHPAGRRISA 311

Query: 195 ILEISN 200
           IL + +
Sbjct: 312 ILNVKD 317


>gi|218897837|ref|YP_002446248.1| UvrD/Rep helicase family protein [Bacillus cereus G9842]
 gi|218546033|gb|ACK98427.1| UvrD/Rep helicase family protein [Bacillus cereus G9842]
          Length = 691

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|163790461|ref|ZP_02184891.1| Putative DNA helicase, superfamily I [Carnobacterium sp. AT7]
 gi|159874214|gb|EDP68288.1| Putative DNA helicase, superfamily I [Carnobacterium sp. AT7]
          Length = 748

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++  +  +   +   AGSGKT +L+Q++  LL
Sbjct: 207 QKQQNQIVRDNSAKITLIEGVAGSGKTVVLMQKIAYLL 244


>gi|89897814|ref|YP_514924.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V alpha
           [Chlamydophila felis Fe/C-56]
 gi|89331186|dbj|BAE80779.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V alpha
           [Chlamydophila felis Fe/C-56]
          Length = 495

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
            +    G+GKT +  Q +L L+  N     +  ++ T  A + + H
Sbjct: 148 LICGGPGTGKTFLATQMILALIKQNPKI-RIAIVSPTGKATSHIRH 192


>gi|328464518|gb|EGF35895.1| putative ATP-dependent helicase [Lactobacillus helveticus MTCC
           5463]
          Length = 768

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + +     V   AGSGKT  ++QR+  LL
Sbjct: 217 QEQNKIIRNTSADLLFVQGAAGSGKTSAILQRIAYLL 253


>gi|323467188|gb|ADX70875.1| ATP-dependent helicase [Lactobacillus helveticus H10]
          Length = 747

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + +     V   AGSGKT  ++QR+  LL
Sbjct: 196 QEQNKIIRNTSADLLFVQGAAGSGKTSAILQRIAYLL 232


>gi|310643531|ref|YP_003948289.1| uvrd/rep helicase family protein [Paenibacillus polymyxa SC2]
 gi|309248481|gb|ADO58048.1| UvrD/Rep helicase family protein [Paenibacillus polymyxa SC2]
          Length = 713

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSAN-AGSGKTHILVQRVLRLL 56
           ++Y     + +   D++S  ++EQ       ++ A V    AGSGKT + + R+  LL
Sbjct: 168 LVYRLGENKDNRLRDIVSTIQAEQDQIIRAAKNTALVIQGVAGSGKTTVALHRLAFLL 225


>gi|229097330|ref|ZP_04228292.1| UvrD/Rep helicase [Bacillus cereus Rock3-29]
 gi|228686141|gb|EEL40057.1| UvrD/Rep helicase [Bacillus cereus Rock3-29]
          Length = 691

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229116325|ref|ZP_04245715.1| UvrD/Rep helicase [Bacillus cereus Rock1-3]
 gi|228667157|gb|EEL22609.1| UvrD/Rep helicase [Bacillus cereus Rock1-3]
          Length = 691

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|228470651|ref|ZP_04055507.1| ATP-dependent DNA helicase, UvrD/REP family [Porphyromonas
          uenonis 60-3]
 gi|228307659|gb|EEK16638.1| ATP-dependent DNA helicase, UvrD/REP family [Porphyromonas
          uenonis 60-3]
          Length = 550

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTK 72
          T  + +   +P +   V+A  G+GKTH L+  +  ++  +        + C+T+T 
Sbjct: 6  TSEQTIPVDEPFK---VTAGPGAGKTHWLISHIKNVVSNSNKLDVVRKVACITYTN 58


>gi|256384910|gb|ACU79479.1| Type III restriction-modification system (MmyCI) endonuclease
           subunit [Mycoplasma mycoides subsp. capri str. GM12]
          Length = 809

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
           A  GSGKT +++  + +L+    +P+     + +T    + AE+  ++ + +  +    D
Sbjct: 30  APTGSGKTFMMINAIDKLIT--TYPNEKFTFVIVT---LSTAELPKQLYDNLNDYKQYLD 84

Query: 95  EILSAEITK------IQGKKPNKSDMSKARHLLITILETPGGLKVQT----IHAF 139
             ++ E  +       + K  +    +K  ++LI   ++ G  ++ T    IH+F
Sbjct: 85  NNITIEYQESPSSSNSKLKDQHFQIKAKQNNVLILGTQSFGKNRIFTEQGIIHSF 139


>gi|170782692|ref|YP_001711026.1| ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157262|emb|CAQ02447.1| ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 1272

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 22  SEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRL---LLANAHPSTLLCLTHTKAAAAE 77
            +++  +       + A A GSGKT  L +  L L    + +  P  L   T ++  A E
Sbjct: 17  RDEIADAIRDNQVVIVAGATGSGKTTQLPKICLELGRESIGHTQPRRLAARTISERIAEE 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           +   V +++      +D++ +    K+       +++ + R L
Sbjct: 77  LGGEVGQLVGYQVRFTDKVSADTRIKLMTDGILLNELQRDRLL 119


>gi|161507977|ref|YP_001577941.1| putative ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
 gi|160348966|gb|ABX27640.1| putative ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
          Length = 768

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + +     V   AGSGKT  ++QR+  LL
Sbjct: 217 QEQNKIIRNTSADLLFVQGAAGSGKTSAILQRIAYLL 253


>gi|84489728|ref|YP_447960.1| helicase [Methanosphaera stadtmanae DSM 3091]
 gi|84373047|gb|ABC57317.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 1513

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 5   NSFQEHSETIDLIS--QTKSEQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLAN 59
           N+  +    ID+ +     S Q+   +  +   S  V    G+GK+  +V  +  LL  N
Sbjct: 80  NTIDKQLNPIDVYNVVDADSSQIAVIEDAKKGHSLVVEGPPGTGKSQTIVNLIAELLANN 139

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
                +L ++  K AA E+  + +E I 
Sbjct: 140 ---QKILFVS-EKKAALEVVEKRMEDIG 163


>gi|228927864|ref|ZP_04090912.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228831927|gb|EEM77516.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 689

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229070290|ref|ZP_04203540.1| UvrD/Rep helicase [Bacillus cereus F65185]
 gi|228712854|gb|EEL64779.1| UvrD/Rep helicase [Bacillus cereus F65185]
          Length = 691

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229073303|ref|ZP_04206453.1| hypothetical protein bcere0025_54320 [Bacillus cereus F65185]
 gi|228709810|gb|EEL61834.1| hypothetical protein bcere0025_54320 [Bacillus cereus F65185]
          Length = 346

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT--HTKA 73
           Q++ E  + S+P  +  ++  AG+GKT +L+  + RL   N +    L  T   T  
Sbjct: 76  QSQYENEIVSNPKINHLITGGAGTGKTVLLMSLMYRLTTENPNMKIGLVTTGNLTNK 132


>gi|196043231|ref|ZP_03110469.1| uvrD/Rep helicase family protein [Bacillus cereus 03BB108]
 gi|196025540|gb|EDX64209.1| uvrD/Rep helicase family protein [Bacillus cereus 03BB108]
          Length = 689

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|157822873|ref|NP_001099589.1| F-box only protein 18 [Rattus norvegicus]
 gi|149020986|gb|EDL78593.1| F-box only protein 18 (predicted) [Rattus norvegicus]
          Length = 1042

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 438 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTFNK 491


>gi|52142701|ref|YP_084128.1| UvrD/Rep helicase family protein [Bacillus cereus E33L]
 gi|51976170|gb|AAU17720.1| UvrD/Rep helicase family protein [Bacillus cereus E33L]
          Length = 689

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|302869170|ref|YP_003837807.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572029|gb|ADL48231.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 704

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  A     +    VS   G+GKT + + R   LL
Sbjct: 178 DIVATIQREQDEAIRSPGNGVTIVSGGPGTGKTAVALHRAAYLL 221


>gi|260102960|ref|ZP_05753197.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
 gi|260083245|gb|EEW67365.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
          Length = 769

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + +     V   AGSGKT  ++QR+  LL
Sbjct: 217 QEQNKIIRNTSADLLFVQGAAGSGKTSAILQRIAYLL 253


>gi|237725174|ref|ZP_04555655.1| type I restriction-modification system restriction subunit
           [Bacteroides sp. D4]
 gi|229436440|gb|EEO46517.1| type I restriction-modification system restriction subunit
           [Bacteroides dorei 5_1_36/D4]
          Length = 1092

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 79/198 (39%), Gaps = 39/198 (19%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEI 85
            ++  V  +AGSGKT     L  ++  L   +  P   +++ +T           R+   
Sbjct: 289 GQTYLVQHSAGSGKTKSMSWLAFQLANLQNVDNTPVFDSVIMIT----------DRI--- 335

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQT---IHAFCE 141
                 + D  ++ EI  ++       D+ K +R+L   + E    + + T     +F  
Sbjct: 336 ------VLDRNIADEIKGMEEVAGTVKDIRKGSRNLAKALAEGGHRIIISTEQKF-SFAL 388

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI---LEI 198
             +++        SHFA+  +E      ++A  +    ++ D N EL++   E       
Sbjct: 389 PKLKEAA-----GSHFAVIIDEAHTAFGKQASHNV-RQVLTDKN-ELRETVEEFGIESRE 441

Query: 199 SNDEDIETLISDIISNRT 216
           + +   + +++++ + R+
Sbjct: 442 AENNMQDQMLAELQAARS 459


>gi|228901353|ref|ZP_04065545.1| UvrD/Rep helicase [Bacillus thuringiensis IBL 4222]
 gi|228858277|gb|EEN02745.1| UvrD/Rep helicase [Bacillus thuringiensis IBL 4222]
          Length = 691

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|228953145|ref|ZP_04115204.1| UvrD/Rep helicase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228806560|gb|EEM53120.1| UvrD/Rep helicase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 691

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|195488838|ref|XP_002092482.1| GE11643 [Drosophila yakuba]
 gi|194178583|gb|EDW92194.1| GE11643 [Drosophila yakuba]
          Length = 833

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 19  QTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           Q ++ Q + + P+      +    G+GKT  +V+ +L+L L     S +L    + +A  
Sbjct: 320 QLEAVQRIVAGPSTQGPYILFGPPGTGKTTTIVETILQLRLQKPQ-SRILVTAGSNSAC- 377

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
                +   +  +   +  +      ++  KK ++     +R +    L++   L
Sbjct: 378 ---DTIALKLCEYIVSNTRLQEHFARQVLPKKDHQLIRLYSRSIYHKGLQSVPAL 429


>gi|78213175|ref|YP_381954.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Synechococcus
           sp. CC9605]
 gi|78197634|gb|ABB35399.1| probable exodeoxyribonuclease V, alpha subunit RecD [Synechococcus
           sp. CC9605]
          Length = 526

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR 54
             E  D ++  +   + A D      +S   G+GKT  +V+ + R
Sbjct: 117 DPELSDRLNAEQCAAVRALDQASVVLLSGGPGTGKTSTVVEILAR 161


>gi|84684993|ref|ZP_01012892.1| ATPase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666725|gb|EAQ13196.1| ATPase [Rhodobacterales bacterium HTCC2654]
          Length = 509

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 19/106 (17%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAE 77
           +R   V   AGSGKT +L Q    L  A                  TL  L  T  AA+ 
Sbjct: 43  SRVMAVIGKAGSGKTLLLAQLYEALEEAGVEVVSGDWEGRKRKDKRTLAILAPTNKAASV 102

Query: 78  MSHR------VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           +  R      +  I+    +  +    AE    Q ++P    ++ A
Sbjct: 103 LRRRGVPATTIHRILYTPVYDPEYERIAEWLAGQAERPEIEGLTDA 148


>gi|323359364|ref|YP_004225760.1| HrpA-like helicase [Microbacterium testaceum StLB037]
 gi|323275735|dbj|BAJ75880.1| HrpA-like helicase [Microbacterium testaceum StLB037]
          Length = 1453

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRL---LLANAHPSTLLCLTH 70
           +L      +++  +       + A A GSGKT  L +  L L    +A+  P  +   T 
Sbjct: 12  ELPVSAARDEIARAIRDHQVVIVAGATGSGKTTQLPKICLELGRTSIAHTQPRRIAARTI 71

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            +  A EM   +   +      +D++ +     +       +++ + R L
Sbjct: 72  AERIAEEMQVPLGSTVGYKVRFTDKVSADTRVALVTDGILLNEIHRDRLL 121


>gi|313822552|gb|EFS60266.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2]
          Length = 1061

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A  +   +
Sbjct: 11  QTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSAQALRTAL 70

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
           +  +         +    + +     P+K  ++      + R LL 
Sbjct: 71  VRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|313674927|ref|YP_004052923.1| superfamily i DNA/RNA helicase [Marivirga tractuosa DSM 4126]
 gi|312941625|gb|ADR20815.1| superfamily I DNA/RNA helicase [Marivirga tractuosa DSM 4126]
          Length = 587

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          Q   EQ    +   +  ++A AGSGKT  L    +    +    S +L L   K
Sbjct: 2  QLTKEQSSIIESDGNIKINAVAGSGKTTTL----IAYAESRPKNSRILYLAFNK 51


>gi|323342690|ref|ZP_08082922.1| hypothetical protein HMPREF0357_11103 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463802|gb|EFY08996.1| hypothetical protein HMPREF0357_11103 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 587

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 17  ISQTKSEQL-----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           I +   +Q+     +  +   S  ++ +AG+GKT +L   V +LL  N+    +  +
Sbjct: 184 IKELTEQQMNLINEIELNEATSYVINGDAGTGKTVLLTHLVAKLLTENSD-KKIAVV 239


>gi|194288830|ref|YP_002004737.1| tad secretion sytem protein, secretion atpase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222665|emb|CAQ68668.1| Tad secretion sytem protein, secretion ATPase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 456

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 17/142 (11%)

Query: 8   QEHSETIDLISQTK--SEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
            + ++ ++L S T   ++ L A    + +  VS   GSGKT +L       +L+   P  
Sbjct: 201 LQVADLVNLRSLTPPMAQLLQALSQAKVNVLVSGGTGSGKTTLL------NILSGFIPED 254

Query: 65  LLCLTHTKAAAAEMSH----RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH- 119
              +T   AA  ++      R+           +    A +      +P++  + + R  
Sbjct: 255 ERVVTIEDAAELQLRQPHVLRLETRPPNIEGKGEITQRALVRNALRMRPDRIILGEVRGG 314

Query: 120 ---LLITILETPGGLKVQTIHA 138
               ++  + T     + TIHA
Sbjct: 315 EALDMLNAMNTGHEGSLTTIHA 336


>gi|218903937|ref|YP_002451771.1| uvrD/Rep helicase family protein [Bacillus cereus AH820]
 gi|218534956|gb|ACK87354.1| uvrD/Rep helicase family protein [Bacillus cereus AH820]
          Length = 689

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 444

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 21/143 (14%)

Query: 2   IYHNSFQEHSETIDLISQ------TKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVL 53
           +   SF    E +  IS+      T  +Q       R   V A+A  G+GKT      +L
Sbjct: 10  MRFESFSFAPEILRAISECGYQEMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 69

Query: 54  RLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
           + +  N  P     +  L LT T+    E++ ++ + I+ +S   D      +  I G  
Sbjct: 70  QKMFDNPMPTQRSNTRALILTPTR----ELAAQIADNISDYSKYID----VSVLTIYGGV 121

Query: 109 PNKSDMSKARHLLITILETPGGL 131
              S   K +     I+ TPG L
Sbjct: 122 KVDSQAQKLKRGTDIIVATPGRL 144


>gi|315080857|gb|EFT52833.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1]
          Length = 1061

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 4   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVVSPSKRLLTAPEQEFRMRELLA 116


>gi|313820643|gb|EFS58357.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1]
 gi|314924886|gb|EFS88717.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3]
          Length = 1058

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
           +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A  +   +
Sbjct: 8   QTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSAQALRTAL 67

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
           +  +         +    + +     P+K  ++      + R LL 
Sbjct: 68  VRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|240949116|ref|ZP_04753464.1| exodeoxyribonuclease V, alpha subunit [Actinobacillus minor NM305]
 gi|240296511|gb|EER47143.1| exodeoxyribonuclease V, alpha subunit [Actinobacillus minor NM305]
          Length = 654

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 7   FQEHSETIDLISQTKSEQ-------LLASDPTRSAWVSANAGSGKTHILVQRVLRLL--- 56
            ++  + +D +     EQ       +  +   R   +S   G+GKT   V R+L  L   
Sbjct: 157 LEQDKKILDQLFGQAGEQIDWQKIAVATALRKRFCVISGGPGTGKTRT-VARLLAALQWK 215

Query: 57  --LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
                A    +  +  T  AAA +   +++ + +      
Sbjct: 216 QFEQGADFLKVALIAPTGKAAARLKESIVQNLASIEMPEK 255


>gi|229030493|ref|ZP_04186531.1| UvrD/Rep helicase [Bacillus cereus AH1271]
 gi|228730837|gb|EEL81779.1| UvrD/Rep helicase [Bacillus cereus AH1271]
          Length = 691

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|225021235|ref|ZP_03710427.1| hypothetical protein CORMATOL_01247 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945968|gb|EEG27177.1| hypothetical protein CORMATOL_01247 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 1342

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 30  PTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
                 + A   GSGKT  +      + R  R L+ +  P  L   T  +  A E+  R+
Sbjct: 79  RDHQVVIIAGETGSGKTTQIPKICLDIGRGRRGLIGHTQPRRLAARTVAERIADELGQRI 138

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            E I       D++      K+       ++M   R+L
Sbjct: 139 GESIGYAIRFDDQVGPQTAVKLMTDGILLAEMQHDRYL 176


>gi|171742507|ref|ZP_02918314.1| hypothetical protein BIFDEN_01619 [Bifidobacterium dentium ATCC
           27678]
 gi|283456406|ref|YP_003360970.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|171278121|gb|EDT45782.1| hypothetical protein BIFDEN_01619 [Bifidobacterium dentium ATCC
           27678]
 gi|283103040|gb|ADB10146.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
          Length = 759

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +  D+++  ++EQ     +D  ++  V    G+GKT + + R   LL
Sbjct: 177 KMTDIVATIQAEQDRIIRADLNQAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|114656227|ref|XP_510286.2| PREDICTED: aquarius [Pan troglodytes]
          Length = 1608

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20   TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
            T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 928  TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 986

Query: 80   HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 987  EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 1039


>gi|65320108|ref|ZP_00393067.1| COG3973: Superfamily I DNA and RNA helicases [Bacillus anthracis
           str. A2012]
          Length = 429

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 152 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 211


>gi|310639251|ref|YP_003944010.1| DEAD/DEAH box helicase [Ketogulonicigenium vulgare Y25]
 gi|308752827|gb|ADO43971.1| DEAD/DEAH box helicase [Ketogulonicigenium vulgare Y25]
          Length = 1012

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 32/215 (14%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77
           +Q        +  +  +AGSGK++    L  R+  L          +++ +T        
Sbjct: 292 DQAQREGVGSNYLIEHSAGSGKSNTIGWLTHRLASLHDDKNARVFDSVVVIT-------- 343

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              RV         + D+ L   I + + K      + ++   L   LE+   + + T+ 
Sbjct: 344 --DRV---------VLDKQLQDTIYQFEHKHGVVQKIDESSRQLAEALESAVPIIITTLQ 392

Query: 138 A--FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-----ELKK 190
              F    + +   E    ++           +I+EA  S       D  E      L++
Sbjct: 393 KFPFVSRQLAKMAEERG-EANSGTLRSRHCAVIIDEAHSSQGGETATDLKEVLGGQGLRE 451

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFF 225
              + +  +++ED+E L   +        L FF F
Sbjct: 452 EAAKYMAENDEEDVEELYRSMAKRGRQANLSFFAF 486


>gi|297191972|ref|ZP_06909370.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151161|gb|EFH30992.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 749

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSAWV-SANAGSGKTHILVQRVLRLL 56
           D++S  ++EQ  +   P R   V     G+GKT + + R   LL
Sbjct: 176 DIVSTIQAEQDRIIRAPQRGVLVVEGGPGTGKTAVALHRAAYLL 219


>gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 410

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 8/137 (5%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLR-LLLANA 60
           H + Q     +     T  +Q         +    +A  G+GKT      V+  LL    
Sbjct: 10  HPTLQHTLNALGYSDPTAIQQQAIPHVLDGKDVMGAAQTGTGKTAAFALPVIHQLLERGV 69

Query: 61  H-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
              + +L +T T+    E++ +V E +  +S  +     A                K   
Sbjct: 70  KGAARVLVVTPTR----ELAQQVYEKVVEYSQHTSLKCVALYGGANINPQKNQLTKKPEI 125

Query: 120 LLITILETPGGLKVQTI 136
           ++ T       L + T+
Sbjct: 126 IVGTPGRLLDHLHIGTL 142


>gi|217958516|ref|YP_002337064.1| hypothetical protein BCAH187_A1094 [Bacillus cereus AH187]
 gi|229137731|ref|ZP_04266334.1| hypothetical protein bcere0013_8600 [Bacillus cereus BDRD-ST26]
 gi|217065738|gb|ACJ79988.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|228645706|gb|EEL01937.1| hypothetical protein bcere0013_8600 [Bacillus cereus BDRD-ST26]
          Length = 588

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 35/124 (28%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAE 77
             + E+     P     V+   GSGKT +L+ R + L+    HP   +  LT+ ++    
Sbjct: 210 DAEQERFAKRVPYGHYMVTGVPGSGKTVLLLARAIHLVRE--HPEWKIKILTYNRS---- 263

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  ++   + +        L+A++  +  +  N                    + V T H
Sbjct: 264 LKTKIENKLNS--------LAADLAFMNVRLEN--------------------IDVSTFH 295

Query: 138 AFCE 141
            F  
Sbjct: 296 KFAL 299


>gi|255552113|ref|XP_002517101.1| ATP-dependent helicase NAM7, putative [Ricinus communis]
 gi|223543736|gb|EEF45264.1| ATP-dependent helicase NAM7, putative [Ricinus communis]
          Length = 882

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 5   NSFQEHSETIDLISQTKSEQ------LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           N   E +  + +      EQ      +L         +    G+GKT  +V+ +L+L   
Sbjct: 380 NRLTETAPLVPITCNLNEEQMCSIEMILGCKRAPPYIIYGPPGTGKTMTIVEAILQLYKN 439

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLE 84
               + +L    + +AA  +  ++L 
Sbjct: 440 RKD-TRILVCAPSNSAADHLLEKLLR 464


>gi|169826457|ref|YP_001696615.1| superfamily I DNA helicase [Lysinibacillus sphaericus C3-41]
 gi|168990945|gb|ACA38485.1| superfamily I DNA helicase [Lysinibacillus sphaericus C3-41]
          Length = 742

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV---LRLLLANAHPSTLLCL 68
           Q +  +++ +   +   V   AGSGKT I + R+   L  +  + +P  L+ L
Sbjct: 197 QKEQNEIIRAHLRQPIIVQGAAGSGKTTIALHRISYFLYTMGEHFNPEQLMIL 249


>gi|122889558|emb|CAM13742.1| F-box protein 18 [Mus musculus]
 gi|123232821|emb|CAM20366.1| F-box protein 18 [Mus musculus]
          Length = 1015

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 411 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTFNK 464


>gi|6063137|gb|AAF03151.1|AF184275_1 F-box protein FBX18 [Mus musculus]
          Length = 905

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 301 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTFNK 354


>gi|262280768|ref|ZP_06058551.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
          RUH2202]
 gi|262257668|gb|EEY76403.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
          RUH2202]
          Length = 500

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A E
Sbjct: 12 EQAIAIDNARLGQSFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIAGE 64


>gi|302560002|ref|ZP_07312344.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302477620|gb|EFL40713.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 694

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ        + S  V    G+GKT + + RV  LL
Sbjct: 192 DIVATIQPEQDEIVRSGLSGSVCVQGGPGTGKTAVGLHRVAYLL 235


>gi|156061925|ref|XP_001596885.1| hypothetical protein SS1G_03108 [Sclerotinia sclerotiorum 1980]
 gi|154700509|gb|EDO00248.1| hypothetical protein SS1G_03108 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 702

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 5   NSFQEHSETIDL-ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH- 61
           N   E  E +DL ++ ++   +  A      A +    G+GKTH L++ +L++L      
Sbjct: 211 NLMGEEIEWVDLSLNDSQKHAIRFALASKEIALIHGPPGTGKTHTLIELILQMLKQGLRV 270

Query: 62  ----PSTL 65
               PS +
Sbjct: 271 LVCGPSNI 278


>gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 514

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 22  DTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRALVLTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      I G  P    ++K RH +  ++ TPG 
Sbjct: 82  TR----ELAAQVAESVETYG----KNLPLRSAVIFGGVPINPQIAKLRHGVDVLVATPGR 133

Query: 131 L 131
           L
Sbjct: 134 L 134


>gi|326789355|ref|YP_004307176.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326540119|gb|ADZ81978.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 805

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 17 ISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72
          +   K +  LA +      V    AGSGKT + V R+  LL    +    +L +T+ K
Sbjct: 1  MKLNKEQLKLAENGAMGYAVIRGVAGSGKTSVGVARIPYLLEKYCNGQDKILFVTYNK 58


>gi|256271560|gb|EEU06603.1| Hcs1p [Saccharomyces cerevisiae JAY291]
          Length = 683

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAH 61
           NSFQ     ++        Q  A +   +     +    G+GKT  L++ + +LL+ N  
Sbjct: 195 NSFQNIKSFLN--PNLNDSQKTAINFAINNDLTIIHGPPGTGKTFTLIELIQQLLIKNPE 252

Query: 62  PSTLLC 67
              +L 
Sbjct: 253 -ERILI 257


>gi|194746818|ref|XP_001955851.1| GF24887 [Drosophila ananassae]
 gi|190623133|gb|EDV38657.1| GF24887 [Drosophila ananassae]
          Length = 1092

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 54/166 (32%), Gaps = 37/166 (22%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--RVLRLLLANAHPSTLLCLTH 70
            + L    ++  L A   +    +    G+GKT  LV   RVL LL       ++L   H
Sbjct: 632 LLALNKIQRAAALRALTTSSHLLIKGLPGTGKTQTLVSLVRVLHLLGK-----SVLITAH 686

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR--------HLLI 122
           T +A                 L   +    +       P   ++S+AR          L 
Sbjct: 687 THSAV---------DNLLLRLLPFNLPLMRLGSNSRIHPQLEEISEARLTQDCTSVEELA 737

Query: 123 TILETPGGLKVQ---TIHAFCEAIMQQFPLEANITSHFAIADEEQS 165
            +LE P  + V    T HA  +   + F         + I DE   
Sbjct: 738 KVLEQPSIVGVTCLGTSHALFQR--RNF--------DYCIVDEATQ 773


>gi|187776740|ref|ZP_02993213.1| hypothetical protein CLOSPO_00255 [Clostridium sporogenes ATCC
           15579]
 gi|187775399|gb|EDU39201.1| hypothetical protein CLOSPO_00255 [Clostridium sporogenes ATCC
           15579]
          Length = 709

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +  D++   + EQ  L+     +S  V+  AGSGKT I + RV  LL
Sbjct: 202 KLKDIVMTIQEEQDNLIRQPKNKSMIVNGVAGSGKTTIALHRVAYLL 248


>gi|327506436|gb|AEA92655.1| p227 [Sweet potato chlorotic stunt virus]
          Length = 1987

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 13   TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
             ++ ++  K  QL      +  + +   G+GKT  +V    RL          L LT TK
Sbjct: 1663 ALEYLTVDKIPQLARDLTKKVTFYNKPPGAGKTTTIVNEFSRLHNEG---KRCLALTCTK 1719

Query: 73   AAAAEMSHRVLEI 85
            A   E++ ++   
Sbjct: 1720 AGKIEIAEKLRAR 1732


>gi|319949284|ref|ZP_08023364.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
 gi|319437074|gb|EFV92114.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
          Length = 886

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVL 53
          + E   A D  R+  VSA  GSGKT  LV    
Sbjct: 29 QLEAFAALDAGRNLLVSAPTGSGKT--LVGEYA 59


>gi|296187505|ref|ZP_06855900.1| hypothetical protein CLCAR_2999 [Clostridium carboxidivorans P7]
 gi|296048027|gb|EFG87466.1| hypothetical protein CLCAR_2999 [Clostridium carboxidivorans P7]
          Length = 1347

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANA 60
           +N ++   + I        EQ   +    +     V    G+GK+H +   +  L+    
Sbjct: 260 YNEWEGIGKDILFPLPANEEQKEITKRLANNFGVVVQGPPGTGKSHTICNLICHLMAHG- 318

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
               +L  + T  A   +S ++ E I + 
Sbjct: 319 --KRVLVTSQTDKALKVLSEKIPEEIRSL 345


>gi|260550531|ref|ZP_05824741.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260406446|gb|EEW99928.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 500

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A E
Sbjct: 12 EQAIAIDNARLGQSFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIAGE 64


>gi|148273603|ref|YP_001223164.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831533|emb|CAN02498.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 1272

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 22  SEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRL---LLANAHPSTLLCLTHTKAAAAE 77
            +++  +       + A A GSGKT  L +  L L    + +  P  L   T ++  A E
Sbjct: 17  RDEIADAIRDNQVVIVAGATGSGKTTQLPKICLELGRESIGHTQPRRLAARTISERIAEE 76

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           +   V +++      +D++ +    K+       +++ + R L
Sbjct: 77  LGGEVGQLVGYQVRFTDKVSADTRIKLMTDGILLNELQRDRLL 119


>gi|6322835|ref|NP_012908.1| Hcs1p [Saccharomyces cerevisiae S288c]
 gi|465704|sp|P34243|HCS1_YEAST RecName: Full=DNA polymerase alpha-associated DNA helicase A
 gi|395256|emb|CAA52266.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|486007|emb|CAA81852.1| DIP1 [Saccharomyces cerevisiae]
 gi|151941528|gb|EDN59891.1| DNA helicase A [Saccharomyces cerevisiae YJM789]
 gi|285813242|tpg|DAA09139.1| TPA: Hcs1p [Saccharomyces cerevisiae S288c]
          Length = 683

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAH 61
           NSFQ     ++        Q  A +   +     +    G+GKT  L++ + +LL+ N  
Sbjct: 195 NSFQNIKSFLN--PNLNDSQKTAINFAINNDLTIIHGPPGTGKTFTLIELIQQLLIKNPE 252

Query: 62  PSTLLC 67
              +L 
Sbjct: 253 -ERILI 257


>gi|282882742|ref|ZP_06291349.1| putative helicase [Peptoniphilus lacrimalis 315-B]
 gi|281297403|gb|EFA89892.1| putative helicase [Peptoniphilus lacrimalis 315-B]
          Length = 674

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHT--KAA-AAEMSHRVLE 84
           AG+GKT +L++++  L +   + S +     T      A+EM  R+ +
Sbjct: 204 AGTGKTELLMRKIKELYVGEEN-SRIA---FTCHNKVLASEMKLRIEK 247


>gi|302552386|ref|ZP_07304728.1| ATP/GTP binding protein [Streptomyces viridochromogenes DSM 40736]
 gi|302470004|gb|EFL33097.1| ATP/GTP binding protein [Streptomyces viridochromogenes DSM 40736]
          Length = 679

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
           D+ +  + EQ  L+  D T S  V    G+GKT + + R   LL    HP  +
Sbjct: 183 DIAATIQPEQDDLVREDLTVSVCVQGAPGTGKTAVGLHRAAYLLY--THPQRI 233


>gi|269128300|ref|YP_003301670.1| AAA ATPase [Thermomonospora curvata DSM 43183]
 gi|268313258|gb|ACY99632.1| AAA ATPase [Thermomonospora curvata DSM 43183]
          Length = 799

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           D+++  + EQ  ++ +    +  V    G+GKT + + RV  LL  +
Sbjct: 184 DIVATIQREQDEVIRAPADGTVLVRGAPGTGKTAVALHRVAYLLFRH 230


>gi|219883337|ref|YP_002478498.1| transcriptional activator domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|219862182|gb|ACL42522.1| transcriptional activator domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 985

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 31 TRSAWVSANAGSGKTHILVQR-------VLRLLLANAH--PSTLLC 67
           R  WV+A AGSGKT  +VQ        +  L L      P  LL 
Sbjct: 16 NRVVWVAATAGSGKTTAIVQAAATWGGPIAWLTLDGTDAAPGRLLI 61


>gi|241155973|ref|XP_002407669.1| DNA2/nam7 helicase, putative [Ixodes scapularis]
 gi|215494175|gb|EEC03816.1| DNA2/nam7 helicase, putative [Ixodes scapularis]
          Length = 1489

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            + T+ E + A        +    G+GKT + VQ ++  L  N      L +TH+  A  
Sbjct: 806 FTPTQVEAIRAGMQPGLTIIVGPPGTGKTDVAVQ-IISNLYHNFPDQRTLLVTHSNQALN 864

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           ++  +++ +     HL       E  + +        ++      + +LE    L+
Sbjct: 865 QLFEKIMMLDMDERHLLRLGHGEEALETEKDFSRYGRVNYVLGKRLQLLEEVSRLQ 920


>gi|118577360|ref|YP_899600.1| putative DNA helicase [Pelobacter propionicus DSM 2379]
 gi|118504865|gb|ABL01347.1| putative DNA helicase [Pelobacter propionicus DSM 2379]
          Length = 501

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 22 SEQLLASDPTRSAWVSANAGSGKTHI 47
           EQ    +   +A V+A AGSGKT  
Sbjct: 5  EEQKAIVEHHGNARVNACAGSGKTST 30


>gi|238918330|ref|YP_002931844.1| hypothetical protein NT01EI_0367 [Edwardsiella ictaluri 93-146]
 gi|238867898|gb|ACR67609.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 1653

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 69/201 (34%), Gaps = 43/201 (21%)

Query: 39   NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
              G+GKT +L    L  LL +A+   +L ++ +  A  E+++RV E+       S +   
Sbjct: 1074 PPGTGKTTLLSA-ALDYLLNDANVRRVLVVSQSHTAVDEVANRVRELSFKRQEQSPDFKL 1132

Query: 99   AEITKIQGKK---------PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
              I ++  ++            +  ++AR      LE                ++     
Sbjct: 1133 PSIVRLGERRRVSEGMLDVHTNALQAQARTAFHRDLEV--------------RLL-ALSA 1177

Query: 150  EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE------------ILE 197
               +   F +    +S  L     +            E+++A  +            ++ 
Sbjct: 1178 RLKLPEAFVL----ESAALYRACGRELFE--FTPARNEVREAQQDGVDVDNLPNDKRMIR 1231

Query: 198  ISNDEDIETLISDIISNRTAL 218
            ++ +  ++ L + +I   +A 
Sbjct: 1232 LTTERRLDNLKNALIGRLSAF 1252


>gi|222094666|ref|YP_002528726.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|221238724|gb|ACM11434.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
          Length = 588

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 35/124 (28%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAE 77
             + E+     P     V+   GSGKT +L+ R + L+    HP   +  LT+ ++    
Sbjct: 210 DAEQERFAKRVPYGHYMVTGVPGSGKTVLLLARAIHLVRE--HPEWKIKILTYNRS---- 263

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
           +  ++   + +        L+A++  +  +  N                    + V T H
Sbjct: 264 LKTKIENKLNS--------LAADLAFMNVRLEN--------------------IDVSTFH 295

Query: 138 AFCE 141
            F  
Sbjct: 296 KFAL 299


>gi|315445541|ref|YP_004078420.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263844|gb|ADU00586.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 1038

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 66/197 (33%), Gaps = 38/197 (19%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++  ++ L   D   +  V    G+GK+ +LV   +  + A   P ++L LT        
Sbjct: 6   TELTTDALGRRDLRGTVRVLGGPGTGKSSLLVDTAVAHIAAGCDPESVLLLT-------- 57

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                       + LS ++ ++  + + G     +                    V+T+H
Sbjct: 58  ----------GSARLSAQVRASITSALLGAGGRAAVREPL---------------VRTVH 92

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++   +++        +    +    +   +I E     LA  + D      +   ++  
Sbjct: 93  SYAFGVLRLAAQRNG-SPPPRLITSAEQDGIIRE----LLAGDVEDGPASPVRWPEQLRP 147

Query: 198 ISNDEDIETLISDIISN 214
             +     T + D+++ 
Sbjct: 148 ALSTVGFATELRDLMAR 164


>gi|295838134|ref|ZP_06825067.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
 gi|295826879|gb|EFG65122.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
          Length = 727

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           D+++  + EQ  ++  D + +  V    G+GKT + + RV  LL A+  
Sbjct: 219 DIVATIQPEQDGIVRGDLSGTVCVQGGPGTGKTAVGLHRVAYLLYAHRD 267


>gi|311741900|ref|ZP_07715711.1| type I restriction-modification system R subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311314906|gb|EFQ84812.1| type I restriction-modification system R subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 886

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 20  TKSEQLLASD-PTRSAWVSANAGSGKTHIL---VQRVLRLLLANAHP-STLLCLT 69
           T+     AS+ P     +  +AGSGKT+ +     R+ RL + +A    +++ +T
Sbjct: 287 TQLVAAAASEGPGHRYLIQHSAGSGKTNSISWTAHRLARLQVDDAPVFDSVIVVT 341


>gi|251778071|ref|ZP_04820991.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082386|gb|EES48276.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 513

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 23/192 (11%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA--- 74
           + ++++A+ P   + +    GSGKT + V ++  LLL +  P     +L +T+   +   
Sbjct: 6   EQKRIIANKPNGHSLIKGVVGSGKTTVAVNKI-PLLLRHYCPEKDDKVLMITY-NKSLKQ 63

Query: 75  -AAEMSHRVLEIITAWSHLSDE--ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             + + +++ + I    +L DE   L   I +I        +  K  + L+  + T    
Sbjct: 64  YVSNIYNKIKDNINIQVNLFDEDNSLKLSIERIDDILIYYFNKYKKENNLMLDIATRKEC 123

Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-- 189
           K+         ++      +++ +   I D +  + + EE     + +   +N EE +  
Sbjct: 124 KI--------ELINAISFVSSLYNDVEIIDPKYFQFIKEEIMW--IKACNYNNIEEYQSV 173

Query: 190 KAFYEILEISND 201
                I  + ND
Sbjct: 174 DRIGRISNLKND 185


>gi|239982748|ref|ZP_04705272.1| ATP/GTP-binding protein [Streptomyces albus J1074]
          Length = 516

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCL 68
            + L+ + PT S  V    G+GKT + + R   LL        +LL L
Sbjct: 194 QDALIRAAPTVSLCVQGAPGTGKTAVGLHRAAYLLYGDGRRGGSLLVL 241


>gi|224368575|ref|YP_002602738.1| Dbp [Desulfobacterium autotrophicum HRM2]
 gi|223691291|gb|ACN14574.1| Dbp [Desulfobacterium autotrophicum HRM2]
          Length = 1961

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 4   HNSFQEHSE-TIDLISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           H  F   ++  +D       E+    A    +S  V+   GSGKT   +  + + LL   
Sbjct: 77  HKGFANFTDQILDRPLHLHQEKALTAACQKDQSLIVATGTGSGKTETFLYPIAQKLLMEP 136

Query: 61  HPS----TLLCL 68
           HP      +L +
Sbjct: 137 HPEQPGVRILLI 148


>gi|190409806|gb|EDV13071.1| DNA helicase A [Saccharomyces cerevisiae RM11-1a]
 gi|207343464|gb|EDZ70918.1| YKL017Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259147817|emb|CAY81067.1| Hcs1p [Saccharomyces cerevisiae EC1118]
 gi|323332808|gb|EGA74213.1| Hcs1p [Saccharomyces cerevisiae AWRI796]
          Length = 683

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAH 61
           NSFQ     ++        Q  A +   +     +    G+GKT  L++ + +LL+ N  
Sbjct: 195 NSFQNIKSFLN--PNLNDSQKTAINFAINNDLTIIHGPPGTGKTFTLIELIQQLLIKNPE 252

Query: 62  PSTLLC 67
              +L 
Sbjct: 253 -ERILI 257


>gi|167033707|ref|YP_001668938.1| hypothetical protein PputGB1_2705 [Pseudomonas putida GB-1]
 gi|166860195|gb|ABY98602.1| conserved hypothetical protein [Pseudomonas putida GB-1]
          Length = 636

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 17/161 (10%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           ++  S        D  ++   E L   D   S  V   AG+GKT  L+ +  RLL     
Sbjct: 138 VHLPSLANDLMLSDQQNRLLREFLSGVD--ESVAVQGFAGTGKTF-LIHQFARLL----E 190

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIIT----AWSHLSDEILSAEITKIQGKKPNKSDM--- 114
           P   L L  T+     +  RV +        +  L+DE+L+ ++T    +  +       
Sbjct: 191 PQRTLLLALTEGQLRALQARVKDASAYTALTFGQLADELLNRDLTSNGWRLRDPYRTKLS 250

Query: 115 ---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152
                A+ +    +   G L  + + A C   ++ F   A+
Sbjct: 251 WRPQDAQVVRWLAIPDIGPLAARDVVALCIRAVRTFCHSAD 291


>gi|328770690|gb|EGF80731.1| hypothetical protein BATDEDRAFT_88403 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 273

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 15/63 (23%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVLRLL 56
           NS Q+ S  IDL      EQ    D      V A         AGSGKT ++   V ++ 
Sbjct: 188 NSVQDAS--IDLNGMLSDEQQEIMD-----LVEAGENVYFSGKAGSGKTQLIRHIVTKMR 240

Query: 57  LAN 59
           L  
Sbjct: 241 LKG 243


>gi|327327124|gb|EGE68903.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA3]
          Length = 1061

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  +  D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 4   MHGWDGLQTRVLVDDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 63

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 64  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 116


>gi|321312895|ref|YP_004205182.1| DNA 3'-5' helicase IV [Bacillus subtilis BSn5]
 gi|320019169|gb|ADV94155.1| DNA 3'-5' helicase IV [Bacillus subtilis BSn5]
          Length = 774

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++ ++ ++   V   AGSGKT   +QRV  LL
Sbjct: 214 QKEQNQIIRNEKSKVLIVQGAAGSGKTSAALQRVAYLL 251


>gi|296081285|emb|CBI17729.3| unnamed protein product [Vitis vinifera]
          Length = 1461

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V    G+GKT   VQ +L +L  N      L +TH+  A  ++  ++++         D
Sbjct: 880 MVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR--------D 930

Query: 95  EILSAEITKIQGKKPNKSDMSKARH 119
                 +   QG++   +D+  +R 
Sbjct: 931 VPARYLLRLGQGEQELATDLDFSRQ 955


>gi|257893786|ref|ZP_05673439.1| ATP-dependent DNA helicase [Enterococcus faecium 1,231,408]
 gi|257830165|gb|EEV56772.1| ATP-dependent DNA helicase [Enterococcus faecium 1,231,408]
          Length = 388

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 221 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 270


>gi|327277814|ref|XP_003223658.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Anolis
           carolinensis]
          Length = 619

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    +A+ GSGKT   L+  +++ +     PS  L LT T+    E++ ++ +     
Sbjct: 239 GRDIVATADTGSGKTAAFLLPVIIKAMGEVEAPSA-LILTPTR----ELAIQIEKQAKEL 293

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 + +  +    G  P    + + +  +  I+ TPG L           I++Q  +
Sbjct: 294 MVGLPNMRTVLLV---GGLPLPPQLHRLKQNVKVIIATPGRL---------LEILKQSSV 341

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E  NI     + DE  +   +  ++     L +I  D+   L  A            IE 
Sbjct: 342 ELHNI--KIVVVDEADTMLKMGFQQQVLDILENIPRDHQTILVSATMPF-------GIEQ 392

Query: 207 LISDIISN 214
           L + ++ N
Sbjct: 393 LANRLLQN 400


>gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 515

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 22  DTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRALVLTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      I G  P    ++K RH +  ++ TPG 
Sbjct: 82  TR----ELAAQVAESVETYG----KNLPLRSAVIFGGVPINPQIAKLRHGVDVLVATPGR 133

Query: 131 L 131
           L
Sbjct: 134 L 134


>gi|289428079|ref|ZP_06429782.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|289158679|gb|EFD06880.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|313825513|gb|EFS63227.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1]
 gi|314978139|gb|EFT22233.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2]
 gi|315088602|gb|EFT60578.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1]
          Length = 1058

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  +  D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 1   MHGWDGLQTRVLVDDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|148231051|ref|NP_001091560.1| intron-binding protein aquarius [Bos taurus]
 gi|146186927|gb|AAI40526.1| AQR protein [Bos taurus]
          Length = 1484

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|110668823|ref|YP_658634.1| DNA2-like DNA replication helicase [Haloquadratum walsbyi DSM
           16790]
 gi|109626570|emb|CAJ53034.1| DNA2-like DNA replication helicase [Haloquadratum walsbyi DSM
           16790]
          Length = 940

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
                 A +    A +    G+GKT+ + Q +  L+        +L    T  A
Sbjct: 540 NRAVKRAVNAEDFALIHGPPGTGKTYTIAQLLSVLVARG---DRVLLSAFTNRA 590


>gi|323336740|gb|EGA78004.1| Hcs1p [Saccharomyces cerevisiae Vin13]
          Length = 683

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAH 61
           NSFQ     ++        Q  A +   +     +    G+GKT  L++ + +LL+ N  
Sbjct: 195 NSFQNIKSFLN--PNLNDSQKTAINFAINNDLTIIHGPPGTGKTFTLIELIQQLLIKNPE 252

Query: 62  PSTLLC 67
              +L 
Sbjct: 253 -ERILI 257


>gi|322514239|ref|ZP_08067300.1| ATP-dependent helicase HrpA [Actinobacillus ureae ATCC 25976]
 gi|322119851|gb|EFX91865.1| ATP-dependent helicase HrpA [Actinobacillus ureae ATCC 25976]
          Length = 1299

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 49/202 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL------- 120
            +     A E+   +   +      +D++    + K+       +++   R+L       
Sbjct: 145 RSVANRIAEELKSELGAAVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYLNQYDTLI 204

Query: 121 -----------------LITILETPGGLKV----QTIH------AFCEA-IM----QQFP 148
                            L  IL     L+V     TI        F  A I+    + FP
Sbjct: 205 IDEAHERSLNNDFILGYLKQILHKRPDLRVIITSATIDVERFSRHFNNAPIIEVSGRTFP 264

Query: 149 LEANITSHFAIADEEQSKKLIE 170
           +E        I +E    +L +
Sbjct: 265 VEVRYRP---IVEENDQDQLQD 283


>gi|321256931|ref|XP_003193410.1| DNA helicase [Cryptococcus gattii WM276]
 gi|317459880|gb|ADV21623.1| DNA helicase, putative [Cryptococcus gattii WM276]
          Length = 954

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
           +++T+   +        + V    G+GKT ++V+  ++LL  +   P  +L   HT  A
Sbjct: 461 LNRTQLRAMGMMLTEALSLVQGPPGTGKTRVIVE-TIKLLKHHFQIPHPILVCAHTNVA 518


>gi|311245067|ref|XP_003121681.1| PREDICTED: intron-binding protein aquarius-like, partial [Sus
           scrofa]
          Length = 1381

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|302535921|ref|ZP_07288263.1| ATP-dependent DNA helicase [Streptomyces sp. C]
 gi|302444816|gb|EFL16632.1| ATP-dependent DNA helicase [Streptomyces sp. C]
          Length = 671

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ        + S  V    G+GKT + + RV  LL
Sbjct: 162 DIVATIQPEQDEIVRSGLSGSVCVQGGPGTGKTAVGLHRVAYLL 205


>gi|296230363|ref|XP_002760672.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 2
           [Callithrix jacchus]
          Length = 568

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L     PS  L LT T+    E++ ++       
Sbjct: 241 GRDILASADTGSGKTAAFLLPVIMRALFERKTPSA-LILTPTR----ELAIQIERQAKEL 295

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           IM+Q  +
Sbjct: 296 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIMKQSSV 343

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   I     + DE  +   +  ++     L +I  D    L  A            IE 
Sbjct: 344 ELCGI--KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIP-------TSIEQ 394

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 395 LASQLLHN 402


>gi|296230361|ref|XP_002760671.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 1
           [Callithrix jacchus]
          Length = 620

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 30/188 (15%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L     PS  L LT T+    E++ ++       
Sbjct: 241 GRDILASADTGSGKTAAFLLPVIMRALFERKTPSA-LILTPTR----ELAIQIERQAKEL 295

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                 +   +   + G  P    + + +  +  I+ TPG L           IM+Q  +
Sbjct: 296 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL---------LDIMKQSSV 343

Query: 150 EA-NITSHFAIADEEQSKKLI--EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206
           E   I     + DE  +   +  ++     L +I  D    L  A            IE 
Sbjct: 344 ELCGI--KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIP-------TSIEQ 394

Query: 207 LISDIISN 214
           L S ++ N
Sbjct: 395 LASQLLHN 402


>gi|256786337|ref|ZP_05524768.1| ATP/GTP binding protein [Streptomyces lividans TK24]
          Length = 680

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 78/241 (32%), Gaps = 39/241 (16%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           D+ +  + EQ  L+ +    +  V    G+GKT + + R   LL    HP  +       
Sbjct: 180 DIAATIQPEQDDLVRAALGTTVCVQGAPGTGKTAVGLHRAAYLLY--THPQRI------- 230

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGG 130
                   R   +I   +      ++  +  +      +S + +  ARH +    + P  
Sbjct: 231 -------KRGGLLILGPNPTFLSYIAEVLPALGESGVRQSTLDREIARHPVTRTDDAPAA 283

Query: 131 L---KVQTIHAFCEAIMQQFPLEANITSHF----AIADEEQSKKLIEEAKKSTLASIMLD 183
                 +T       ++++  L A +        A+ D     ++  EA    +A +  +
Sbjct: 284 ALKHDART-----AEVLRR-ALYARVDPGAAGDLAVPDGSYRWRVPAEALARIVAEVREE 337

Query: 184 NN------EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                   E ++      ++   +       +  +      + +      +W R   E+ 
Sbjct: 338 EPPYGVGRERVRARIVRYVQERAERRAGPQSNAWLRRVERCRPVGAALDAVWPRVRPEEV 397

Query: 238 L 238
           +
Sbjct: 398 V 398


>gi|241895830|ref|ZP_04783126.1| possible DNA helicase [Weissella paramesenteroides ATCC 33313]
 gi|241870873|gb|EER74624.1| possible DNA helicase [Weissella paramesenteroides ATCC 33313]
          Length = 761

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 8   QEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q++ E +  I  T  K +  +  D T    V    AGSGKT  ++QR+  LL
Sbjct: 194 QQNDEVMRNIVATIQKEQNQIIRDTTSDLLVVQGVAGSGKTSAILQRIAFLL 245


>gi|169634544|ref|YP_001708280.1| putative DNA helicase [Acinetobacter baumannii SDF]
 gi|184156679|ref|YP_001845018.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|239500921|ref|ZP_04660231.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii AB900]
 gi|260556290|ref|ZP_05828509.1| superfamily I DNA and RNA helicase [Acinetobacter baumannii ATCC
          19606]
 gi|294842018|ref|ZP_06786701.1| superfamily I DNA/RNA helicase [Acinetobacter sp. 6014059]
 gi|169153336|emb|CAP02449.1| putative DNA helicase [Acinetobacter baumannii]
 gi|183208273|gb|ACC55671.1| Superfamily I DNA and RNA helicase [Acinetobacter baumannii
          ACICU]
 gi|193076190|gb|ABO10805.2| putative DNA helicase [Acinetobacter baumannii ATCC 17978]
 gi|260410345|gb|EEX03644.1| superfamily I DNA and RNA helicase [Acinetobacter baumannii ATCC
          19606]
 gi|322506566|gb|ADX02020.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii 1656-2]
 gi|323516445|gb|ADX90826.1| putative DNA helicase [Acinetobacter baumannii TCDC-AB0715]
          Length = 500

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A E
Sbjct: 12 EQAIAIDNARLGQSFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIAGE 64


>gi|169797398|ref|YP_001715191.1| putative DNA helicase [Acinetobacter baumannii AYE]
 gi|213155788|ref|YP_002317833.1| putative DNA helicase [Acinetobacter baumannii AB0057]
 gi|215484837|ref|YP_002327074.1| hypothetical protein ABBFA_003190 [Acinetobacter baumannii
          AB307-0294]
 gi|301345340|ref|ZP_07226081.1| hypothetical protein AbauAB0_03829 [Acinetobacter baumannii
          AB056]
 gi|301512595|ref|ZP_07237832.1| hypothetical protein AbauAB05_13457 [Acinetobacter baumannii
          AB058]
 gi|301594579|ref|ZP_07239587.1| hypothetical protein AbauAB059_02180 [Acinetobacter baumannii
          AB059]
 gi|169150325|emb|CAM88222.1| putative DNA helicase [Acinetobacter baumannii AYE]
 gi|213054948|gb|ACJ39850.1| putative DNA helicase [Acinetobacter baumannii AB0057]
 gi|213986722|gb|ACJ57021.1| hypothetical protein ABBFA_003190 [Acinetobacter baumannii
          AB307-0294]
          Length = 500

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A E
Sbjct: 12 EQAIAIDNARLGQSFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIAGE 64


>gi|148695921|gb|EDL27868.1| aquarius, isoform CRA_b [Mus musculus]
          Length = 1469

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 793 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 851

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 852 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 904


>gi|145595902|ref|YP_001160199.1| hypothetical protein Strop_3388 [Salinispora tropica CNB-440]
 gi|145305239|gb|ABP55821.1| hypothetical protein Strop_3388 [Salinispora tropica CNB-440]
          Length = 706

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  A     S    VS   G+GKT + + R   LL
Sbjct: 178 DIVATIQREQDEAIRSPGSGVTVVSGGPGTGKTAVALHRAAYLL 221


>gi|56475581|ref|YP_157170.1| hypothetical protein ebA284 [Aromatoleum aromaticum EbN1]
 gi|56311624|emb|CAI06269.1| similar to DNA helicase UvrD [Aromatoleum aromaticum EbN1]
          Length = 691

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSH 80
             +L   D + S  V   AG+GKT + + R   L    A   + +   T T+  AA++  
Sbjct: 259 QRKLSIGDRSGSMRVLGGAGTGKTVLAMHRAKWLAENRASSDSKVFFTTFTRNLAADIED 318


>gi|320007189|gb|ADW02039.1| superfamily I DNA/RNA helicase [Streptomyces flavogriseus ATCC
           33331]
          Length = 1567

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 28/123 (22%)

Query: 16  LISQTKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLAN------------- 59
              +T  +Q              V    G+GKTH +   V  LL                
Sbjct: 372 FPGKTNEQQRRVLRRLQKDTGVVVQGPPGTGKTHTIANLVSALLAEGQRVLVTSARDQPL 431

Query: 60  -------AHPSTLLCL-----THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK 107
                    P   LC+     T +    +E+   V  +    +    E L  EI ++  +
Sbjct: 432 AVLRDKLPKPVRDLCVLLLSSTRSNNGTSELERTVTALTKQVASTDAETLQGEINRLTKR 491

Query: 108 KPN 110
           + +
Sbjct: 492 RLD 494


>gi|306835989|ref|ZP_07468981.1| DNA or RNA helicase [Corynebacterium accolens ATCC 49726]
 gi|304568155|gb|EFM43728.1| DNA or RNA helicase [Corynebacterium accolens ATCC 49726]
          Length = 752

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + ++++  +      V    G+GKT + + RV  LL
Sbjct: 218 QREQDEIIRDNTRGVMVVEGGPGTGKTAVALHRVAYLL 255


>gi|289770227|ref|ZP_06529605.1| ATP/GTP binding protein [Streptomyces lividans TK24]
 gi|289700426|gb|EFD67855.1| ATP/GTP binding protein [Streptomyces lividans TK24]
          Length = 684

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 78/241 (32%), Gaps = 39/241 (16%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           D+ +  + EQ  L+ +    +  V    G+GKT + + R   LL    HP  +       
Sbjct: 184 DIAATIQPEQDDLVRAALGTTVCVQGAPGTGKTAVGLHRAAYLLY--THPQRI------- 234

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGG 130
                   R   +I   +      ++  +  +      +S + +  ARH +    + P  
Sbjct: 235 -------KRGGLLILGPNPTFLSYIAEVLPALGESGVRQSTLDREIARHPVTRTDDAPAA 287

Query: 131 L---KVQTIHAFCEAIMQQFPLEANITSHF----AIADEEQSKKLIEEAKKSTLASIMLD 183
                 +T       ++++  L A +        A+ D     ++  EA    +A +  +
Sbjct: 288 ALKHDART-----AEVLRR-ALYARVDPGAAGDLAVPDGSYRWRVPAEALARIVAEVREE 341

Query: 184 NN------EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                   E ++      ++   +       +  +      + +      +W R   E+ 
Sbjct: 342 EPPYGVGRERVRARIVRYVQERAERRAGPQSNAWLRRVERCRPVGAALDAVWPRVRPEEV 401

Query: 238 L 238
           +
Sbjct: 402 V 402


>gi|228909116|ref|ZP_04072945.1| hypothetical protein bthur0013_32710 [Bacillus thuringiensis IBL
           200]
 gi|228850624|gb|EEM95449.1| hypothetical protein bthur0013_32710 [Bacillus thuringiensis IBL
           200]
          Length = 584

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT--HTKA 73
           Q++ E  + S+P  +  ++  AG+GKT +L+  + RL   N +    L  T   T  
Sbjct: 184 QSQYENEIVSNPKINHLITGGAGTGKTVLLMSLMYRLATENPNMKIGLVTTGNLTNK 240


>gi|227501811|ref|ZP_03931860.1| helicase [Corynebacterium accolens ATCC 49725]
 gi|227077836|gb|EEI15799.1| helicase [Corynebacterium accolens ATCC 49725]
          Length = 752

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + ++++  +      V    G+GKT + + RV  LL
Sbjct: 218 QREQDEIIRDNTRGVMVVEGGPGTGKTAVALHRVAYLL 255


>gi|238855536|ref|ZP_04645839.1| superfamily I DNA and RNA helicase [Lactobacillus jensenii 269-3]
 gi|260665125|ref|ZP_05865975.1| superfamily I DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282932314|ref|ZP_06337749.1| superfamily I DNA/RNA helicase [Lactobacillus jensenii 208-1]
 gi|238831820|gb|EEQ24154.1| superfamily I DNA and RNA helicase [Lactobacillus jensenii 269-3]
 gi|260561179|gb|EEX27153.1| superfamily I DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281303535|gb|EFA95702.1| superfamily I DNA/RNA helicase [Lactobacillus jensenii 208-1]
          Length = 764

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  +       V   AGSGKT  ++QR+  LL
Sbjct: 213 KEQNKIIRNTNADLLFVQGAAGSGKTSAILQRIAYLL 249


>gi|158256662|dbj|BAF84304.1| unnamed protein product [Homo sapiens]
          Length = 1485

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|148491482|gb|ABQ66265.1| AQR [Homo sapiens]
          Length = 1485

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 525

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 33  DTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRALVLTP 92

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      I G  P    ++K RH +  ++ TPG 
Sbjct: 93  TR----ELAAQVAESVETYG----KNLPLRSAVIFGGVPINPQIAKLRHGVDVLVATPGR 144

Query: 131 L 131
           L
Sbjct: 145 L 145


>gi|23099747|ref|NP_693213.1| hypothetical protein OB2292 [Oceanobacillus iheyensis HTE831]
 gi|22777977|dbj|BAC14248.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 771

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 1   MIYHNSFQEHSETIDLISQT-KSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           ++  +  Q  + T+  I  T + EQ        S    V   AGSGKT   +QR+  LL
Sbjct: 194 LLQESLSQSANATMKSIVATIQQEQNRIIRHQGSKILVVQGAAGSGKTAAALQRIAYLL 252


>gi|329910856|ref|ZP_08275391.1| ATP-dependent DNA helicase PcrA [Oxalobacteraceae bacterium
          IMCC9480]
 gi|327546061|gb|EGF31133.1| ATP-dependent DNA helicase PcrA [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 662

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 23 EQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
          EQ+   + TR    + A AG+GKT +L   + R        S  + L  ++ A      R
Sbjct: 8  EQIAIIESTRPITMIEAVAGAGKTTVLACVLKRACEKGIASSQAIALCFSQGA----KER 63

Query: 82 VLEIITA 88
          + +    
Sbjct: 64 LAQKCAE 70


>gi|320093991|ref|ZP_08025817.1| ATP-dependent DNA helicase rep [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979072|gb|EFW10589.1| ATP-dependent DNA helicase rep [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 778

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ-LLASDPTRS-AWVSANAGSGKTHILVQRVLRLL 56
           M   N+ +E     D+++  ++EQ  +   P R    V    G+GKT + + RV  LL
Sbjct: 184 MSALNAARE-GRMSDIVATIQAEQDEIIRSPHRGLVVVQGGPGTGKTAVALHRVAYLL 240


>gi|309789722|ref|ZP_07684302.1| hypothetical protein OSCT_0253 [Oscillochloris trichoides DG6]
 gi|308228208|gb|EFO81856.1| hypothetical protein OSCT_0253 [Oscillochloris trichoides DG6]
          Length = 1019

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           H ET+ ++ Q  +    A+ P ++  V A AG GK+H+L    L  +LA+  P   LC+ 
Sbjct: 20  HPETVAVVQQAFATAHGAAQP-QALVVEAGAGLGKSHLLSG--LDWILASERPDLFLCI- 75

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
                      R++++    +  S+ I    I  +  K+ N  D       +    +   
Sbjct: 76  ----------ARIIDLSDTNARSSNTIQRKIIEGLTYKEDNPKDHRFTPTRIADAFQEYN 125

Query: 130 G 130
            
Sbjct: 126 A 126


>gi|300173923|ref|YP_003773089.1| ComG operon protein 1 [Leuconostoc gasicomitatum LMG 18811]
 gi|299888302|emb|CBL92270.1| ComG operon protein 1 [Leuconostoc gasicomitatum LMG 18811]
          Length = 315

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           +   + +Q+ A+ P    +V +   GSGKT  L       LL        L LT
Sbjct: 109 LDFQQFQQIEAALPNSGLFVISGPTGSGKTTTL-----YRLLDKVSDDK-LVLT 156


>gi|224536195|ref|ZP_03676734.1| hypothetical protein BACCELL_01061 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522179|gb|EEF91284.1| hypothetical protein BACCELL_01061 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 690

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 6   SFQEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRL---LLANA 60
           S     +  ++++  + EQ  +  +      +    AGSGKT I + R+  L   L  N 
Sbjct: 189 SSNADDKMRNIVTTIQREQNRIIRNEEAHVLIIQGVAGSGKTSIALHRIAYLLYTLKGNI 248

Query: 61  HPSTLLCL 68
               +L +
Sbjct: 249 SSKDILII 256


>gi|198282435|ref|YP_002218756.1| hypothetical protein Lferr_0295 [Acidithiobacillus ferrooxidans
          ATCC 53993]
 gi|198246956|gb|ACH82549.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans
          ATCC 53993]
          Length = 629

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLT 69
          D ++  +   LL ++ +    + + AGSGKT  +++ +  L              + C+T
Sbjct: 9  DTLADIELRSLLDNNASTGFVMISGAGSGKTTSIIKALDHLRKTRGPYLRQRAKKIACIT 68

Query: 70 HTKAAAAEM 78
          +T+ A  E+
Sbjct: 69 YTEVAVGEI 77


>gi|149022936|gb|EDL79830.1| aquarius (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 1472

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 793 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 851

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 852 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 904


>gi|155369656|ref|NP_001094457.1| intron-binding protein aquarius [Rattus norvegicus]
 gi|126631237|gb|AAI33728.1| Aqr protein [Rattus norvegicus]
 gi|149022935|gb|EDL79829.1| aquarius (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 1484

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|38788372|ref|NP_055506.1| intron-binding protein aquarius [Homo sapiens]
 gi|116242995|sp|O60306|AQR_HUMAN RecName: Full=Intron-binding protein aquarius; AltName:
           Full=Intron-binding protein of 160 kDa; Short=IBP160
 gi|117558165|gb|AAI27112.1| Aquarius homolog (mouse) [Homo sapiens]
 gi|117558523|gb|AAI27113.1| Aquarius homolog (mouse) [Homo sapiens]
 gi|119612726|gb|EAW92320.1| aquarius homolog (mouse), isoform CRA_b [Homo sapiens]
 gi|119612727|gb|EAW92321.1| aquarius homolog (mouse), isoform CRA_b [Homo sapiens]
 gi|168273028|dbj|BAG10353.1| aquarius homolog [synthetic construct]
          Length = 1485

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|163644327|ref|NP_033832.2| intron-binding protein aquarius [Mus musculus]
 gi|116242999|sp|Q8CFQ3|AQR_MOUSE RecName: Full=Intron-binding protein aquarius
 gi|74211537|dbj|BAE26500.1| unnamed protein product [Mus musculus]
 gi|123123504|emb|CAM18123.1| aquarius [Mus musculus]
 gi|148695920|gb|EDL27867.1| aquarius, isoform CRA_a [Mus musculus]
          Length = 1481

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|297296098|ref|XP_001089350.2| PREDICTED: intron-binding protein aquarius [Macaca mulatta]
          Length = 1521

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 872 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 930

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 931 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 983


>gi|281342412|gb|EFB17996.1| hypothetical protein PANDA_006216 [Ailuropoda melanoleuca]
          Length = 1422

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 736 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 794

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 795 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 847


>gi|192359561|ref|YP_001982828.1| ATP-dependent helicase HrpA [Cellvibrio japonicus Ueda107]
 gi|190685726|gb|ACE83404.1| ATP-dependent helicase HrpA [Cellvibrio japonicus Ueda107]
          Length = 1313

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLCLTHTKA 73
           + E++ A        V A   GSGKT  L      + R +  L+ +  P  +   T    
Sbjct: 78  RREEIAALLDQHQVVVLAGETGSGKTTQLPKICLTIGRGVHGLIGHTQPRRIAANTVANR 137

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116
            A E+   + + +      +D      + K+       +++  
Sbjct: 138 IAEELHSPLGDKVGYQVRFTDHSNDNTLIKVMTDGILLAEIQH 180


>gi|160895104|ref|ZP_02075878.1| hypothetical protein CLOL250_02655 [Clostridium sp. L2-50]
 gi|156863535|gb|EDO56966.1| hypothetical protein CLOL250_02655 [Clostridium sp. L2-50]
          Length = 717

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q +   L+ +    +  V   AGSGKT + + R+  LL  N
Sbjct: 220 QKEQNALIRNKTAYNLIVDGRAGSGKTVVAMHRLAWLLFNN 260


>gi|149692086|ref|XP_001503693.1| PREDICTED: aquarius homolog (mouse) isoform 1 [Equus caballus]
          Length = 1481

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|149692084|ref|XP_001503694.1| PREDICTED: aquarius homolog (mouse) isoform 2 [Equus caballus]
          Length = 1491

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|153809562|ref|ZP_01962230.1| hypothetical protein BACCAC_03880 [Bacteroides caccae ATCC 43185]
 gi|149127807|gb|EDM19031.1| hypothetical protein BACCAC_03880 [Bacteroides caccae ATCC 43185]
          Length = 550

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL---LANA 60
           S     +  ++++  + EQ L   ++  R+  +   AGSGKT I + R+  LL     N 
Sbjct: 56  SSNADDKMKNIVATIQREQNLIIRNEEARTLIIQGVAGSGKTSIALHRIAYLLYAFQGNI 115

Query: 61  HPSTLLCL 68
               +L +
Sbjct: 116 SSKDILIV 123


>gi|58257729|dbj|BAA25486.3| KIAA0560 protein [Homo sapiens]
          Length = 1521

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 841 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 899

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 900 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 952


>gi|33240543|ref|NP_875485.1| ATP-dependent exoDNAse alpha subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238071|gb|AAQ00138.1| ATP-dependent exoDNAse alpha subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 564

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 18/152 (11%)

Query: 13  TIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCL 68
           T    S    EQL A +   +     +S   G+GKTH +V  +++ L  + HP+  +   
Sbjct: 129 TRQGFSALNLEQLSAVEAISNHNLILLSGGPGTGKTHTIVNMLIKAL--SIHPNLKIGLG 186

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
             T  A      R+ E I   S   DE    ++ KI     ++  +       +   +  
Sbjct: 187 APTGKATR----RLEETIQQSSLNLDEEYKIKLAKIPCLTLHR-WLQAVEGKFLKGKKNK 241

Query: 129 GGLKVQTIH-------AFCEAIMQQFPLEANI 153
             L +  I        +  +A++   P E+ +
Sbjct: 242 LQLDILVIDEMSMVDLSLMQAVLNALPKESQL 273


>gi|28972277|dbj|BAC65592.1| mKIAA0560 protein [Mus musculus]
          Length = 1500

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 824 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 882

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 883 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 935


>gi|21222591|ref|NP_628370.1| ATP/GTP binding protein [Streptomyces coelicolor A3(2)]
 gi|9857152|emb|CAC04031.1| putative ATP/GTP binding protein [Streptomyces coelicolor A3(2)]
          Length = 680

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 78/241 (32%), Gaps = 39/241 (16%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           D+ +  + EQ  L+ +    +  V    G+GKT + + R   LL    HP  +       
Sbjct: 180 DIAATIQPEQDDLVRAALGTTVCVQGAPGTGKTAVGLHRAAYLLY--THPQRI------- 230

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGG 130
                   R   +I   +      ++  +  +      +S + +  ARH +    + P  
Sbjct: 231 -------KRGGLLILGPNPTFLSYIAEVLPALGESGVRQSTLDREIARHPVTRTDDAPAA 283

Query: 131 L---KVQTIHAFCEAIMQQFPLEANITSHF----AIADEEQSKKLIEEAKKSTLASIMLD 183
                 +T       ++++  L A +        A+ D     ++  EA    +A +  +
Sbjct: 284 ALKHDART-----AEVLRR-ALYARVDPGAAGDLAVPDGSYRWRVPAEALARIVAEVREE 337

Query: 184 NN------EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237
                   E ++      ++   +       +  +      + +      +W R   E+ 
Sbjct: 338 EPPYGVGRERVRARIVRYVQERAERRAGPQSNAWLRRVERCRPVGAALDAVWPRVRPEEV 397

Query: 238 L 238
           +
Sbjct: 398 V 398


>gi|301764867|ref|XP_002917855.1| PREDICTED: intron-binding protein aquarius-like [Ailuropoda
           melanoleuca]
          Length = 1491

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|296483374|gb|DAA25489.1| aquarius [Bos taurus]
          Length = 1422

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|260597684|ref|YP_003210255.1| hydrogenase nickel incorporation protein HypB [Cronobacter
           turicensis z3032]
 gi|260216861|emb|CBA30391.1| Hydrogenase isoenzymes nickel incorporation protein hypB
           [Cronobacter turicensis z3032]
          Length = 290

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           + I+Q   ++L A        VS + GSGKT +L + + RLL
Sbjct: 89  NQIAQRNRQRLAARGQLALNLVS-SPGSGKTTLLTETLKRLL 129


>gi|160890181|ref|ZP_02071184.1| hypothetical protein BACUNI_02621 [Bacteroides uniformis ATCC 8492]
 gi|317481445|ref|ZP_07940511.1| hypothetical protein HMPREF1007_03630 [Bacteroides sp. 4_1_36]
 gi|156860569|gb|EDO54000.1| hypothetical protein BACUNI_02621 [Bacteroides uniformis ATCC 8492]
 gi|316902355|gb|EFV24243.1| hypothetical protein HMPREF1007_03630 [Bacteroides sp. 4_1_36]
          Length = 686

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           Q +  Q++ ++  R+  +   AGSGKT I + R+  LL     +     +L +
Sbjct: 204 QREQNQIIRNEDIRTLIIQGVAGSGKTSIALHRIAYLLYTFRDSISSKDILII 256


>gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii
           DJ]
          Length = 557

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 17/123 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           +     E       T  +Q    A    R   V+A  G+GKT      VL  L    HP 
Sbjct: 11  ALVRAVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPGGHPD 70

Query: 64  ----------TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
                      +L LT T+    E++ +V +    ++    +++SA I    G  P    
Sbjct: 71  KEHRHGPRQARVLVLTPTR----ELAAQVHDSFKLYAR-DLKLVSACIFGGVGMNPQVQA 125

Query: 114 MSK 116
           +S+
Sbjct: 126 LSR 128


>gi|312873484|ref|ZP_07733534.1| putative helicase IV [Lactobacillus iners LEAF 2052A-d]
 gi|311090993|gb|EFQ49387.1| putative helicase IV [Lactobacillus iners LEAF 2052A-d]
          Length = 763

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 212 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 248


>gi|307825820|ref|ZP_07656036.1| exodeoxyribonuclease V, alpha subunit [Methylobacter tundripaludum
           SV96]
 gi|307733128|gb|EFO03989.1| exodeoxyribonuclease V, alpha subunit [Methylobacter tundripaludum
           SV96]
          Length = 562

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 12  ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
              D+  +T  ++  A  +     + ++   G+GKT  +V+ +  L      P  +    
Sbjct: 128 RYFDMRDETDDQREAAKMAAKQSFSIITGGPGTGKTFTVVKILALLQELAEQPLHIALAA 187

Query: 70  HTKAAA----------------AE-MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112
            T  AA                +E + +R+ E +T    L   I  +   +    KP   
Sbjct: 188 PTGKAAMRLQESIGKSKAKLPCSEAIKNRIPETVTTLHRLLGAIPPSPYFRHNADKPLVY 247

Query: 113 DM 114
           D+
Sbjct: 248 DL 249


>gi|299536949|ref|ZP_07050254.1| superfamily I DNA helicase [Lysinibacillus fusiformis ZC1]
 gi|298727529|gb|EFI68099.1| superfamily I DNA helicase [Lysinibacillus fusiformis ZC1]
          Length = 740

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV---LRLLLANAHPSTLLCL 68
           Q +  +++ +   +   V   AGSGKT I + R+   L  +  + +P  L+ L
Sbjct: 197 QKEQNEIIRAHLRQPIIVQGAAGSGKTTIALHRISYFLYTMGEHFNPEQLMIL 249


>gi|291485840|dbj|BAI86915.1| hypothetical protein BSNT_04990 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 774

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           S    ++  +++S  + EQ       +S    V   AGSGKT   +QRV  LL
Sbjct: 199 SHHSDTQMKNIVSTIQKEQNQIIRNEKSKILIVQGAAGSGKTSAALQRVAYLL 251


>gi|315504353|ref|YP_004083240.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410972|gb|ADU09089.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 704

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  A     +    VS   G+GKT + + R   LL
Sbjct: 178 DIVATIQREQDEAIRSPGNGVTIVSGGPGTGKTAVALHRAAYLL 221


>gi|260558523|ref|ZP_05830719.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260075697|gb|EEW64003.1| conserved hypothetical protein [Enterococcus faecium C68]
          Length = 618

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 201 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 250


>gi|238926535|ref|ZP_04658295.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
 gi|238885481|gb|EEQ49119.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
          Length = 657

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 60/156 (38%), Gaps = 28/156 (17%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99
           AG+GKT  L+Q  ++L+        +L LT+ +A  +++  R+  +        +  ++ 
Sbjct: 268 AGTGKTVRLIQTAIKLVDEEQV--RVLILTYNRALVSDIR-RLFALAELPDMFEENCVTI 324

Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159
              +    +   + +   R L    LE               +I+++  +          
Sbjct: 325 NTMQSFFFQLANNLLYDGRMLGDEFLEKYD------------SILREMNVF--------- 363

Query: 160 ADEEQSKKLIEE--AKKSTLAS--IMLDNNEELKKA 191
             ++ +  L +E  A   TL    +++D  ++ K +
Sbjct: 364 LSDDDAIGLAKESMAADQTLDWDYVLIDEAQDWKAS 399


>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 515

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 22  DTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRALVLTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      I G  P    ++K RH +  ++ TPG 
Sbjct: 82  TR----ELAAQVAESVETYG----KNLPLRSAVIFGGVPINPQIAKLRHGVDVLVATPGR 133

Query: 131 L 131
           L
Sbjct: 134 L 134


>gi|16080398|ref|NP_391225.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311295|ref|ZP_03593142.1| hypothetical protein Bsubs1_18161 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315622|ref|ZP_03597427.1| hypothetical protein BsubsN3_18077 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320538|ref|ZP_03601832.1| hypothetical protein BsubsJ_18045 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324822|ref|ZP_03606116.1| hypothetical protein BsubsS_18196 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81555947|sp|O32215|HELD_BACSU RecName: Full=Helicase IV
 gi|2635858|emb|CAB15350.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. subtilis str. 168]
          Length = 774

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           S    ++  +++S  + EQ       +S    V   AGSGKT   +QRV  LL
Sbjct: 199 SHHSDTQMKNIVSTIQKEQNQIIRNEKSKILIVQGAAGSGKTSAALQRVAYLL 251


>gi|145225244|ref|YP_001135922.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217730|gb|ABP47134.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
          Length = 1038

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 64/197 (32%), Gaps = 38/197 (19%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           ++  ++ L   D   +  V    G+GK+ +LV   +  + A   P ++L LT        
Sbjct: 6   TELTTDALGRRDLRGTVRVLGGPGTGKSSLLVDTAVAHIAAGCDPESVLLLT-------- 57

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                       S      +++ +    G+   +  +                  V+T+H
Sbjct: 58  -------GSARLSVQVRASITSALLGAGGRAAVREPL------------------VRTVH 92

Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197
           ++   +++        +    +    +   +I E     LA  + D      +   ++  
Sbjct: 93  SYAFGVLRLAAQRNG-SPPPRLITSAEQDGIIRE----LLAGDVEDGPASPVRWPEQLRP 147

Query: 198 ISNDEDIETLISDIISN 214
             +     T + D+++ 
Sbjct: 148 ALSTVGFATELRDLMAR 164


>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 526

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL             L LT 
Sbjct: 33  DTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGNRAQAGQVRALVLTP 92

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      I G  P    ++K RH +  ++ TPG 
Sbjct: 93  TR----ELAAQVAESVETYG----KNLPLRSAVIFGGVPINPQIAKLRHGVDVLVATPGR 144

Query: 131 L 131
           L
Sbjct: 145 L 145


>gi|321457433|gb|EFX68520.1| hypothetical protein DAPPUDRAFT_203262 [Daphnia pulex]
          Length = 633

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 12  ETIDLISQ-TKSEQLLAS-------DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           + ID ++     EQ  A               +    G+GKT  +V+ +L++ L     S
Sbjct: 191 DQIDWVNPCLNREQRRAVLRILEGVHRPIPYIIYGPPGTGKTVTVVEAILQVFLLCPR-S 249

Query: 64  TLLCLTHTKAAAAEMSHRVLE 84
            +L  T + ++A  ++HR+ E
Sbjct: 250 RILVATPSNSSADLIAHRLHE 270


>gi|315656839|ref|ZP_07909726.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492794|gb|EFU82398.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 800

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           S     +  D++S  ++EQ  ++ SD      V    G+GKT + + R   LL A+  
Sbjct: 216 SRARSGQMSDIVSTIQAEQDRVIRSDLNAFLVVQGGPGTGKTAVALHRAAYLLYAHRD 273


>gi|315655240|ref|ZP_07908141.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490495|gb|EFU80119.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 801

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           S     +  D++S  ++EQ  ++ SD      V    G+GKT + + R   LL A+  
Sbjct: 216 SRARSGQMSDIVSTIQAEQDRVIRSDLNAFLVVQGGPGTGKTAVALHRAAYLLYAHRD 273


>gi|309808985|ref|ZP_07702859.1| putative helicase IV [Lactobacillus iners SPIN 2503V10-D]
 gi|308170641|gb|EFO72660.1| putative helicase IV [Lactobacillus iners SPIN 2503V10-D]
          Length = 763

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 212 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 248


>gi|304389596|ref|ZP_07371558.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327149|gb|EFL94385.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 800

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           S     +  D++S  ++EQ  ++ SD      V    G+GKT + + R   LL A+  
Sbjct: 216 SRARSGQMSDIVSTIQAEQDRVIRSDLNAFLVVQGGPGTGKTAVALHRAAYLLYAHRD 273


>gi|262374049|ref|ZP_06067326.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter junii SH205]
 gi|262311060|gb|EEY92147.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter junii SH205]
          Length = 581

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 1/94 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            ++   G+GKT+ L  R++  L        +     T  AA  M   +         L  
Sbjct: 143 IITGGPGTGKTYTLA-RIIAALNQTIPDIRIAMAAPTGKAAQRMQEALQNSFKDPKLLES 201

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
            +++  + +   +  ++      R +    L+ P
Sbjct: 202 GLVTDSLRQQSTQTLHRLLGMGNRQVPRFNLKQP 235


>gi|298346695|ref|YP_003719382.1| superfamily I DNA and RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|298236756|gb|ADI67888.1| superfamily I DNA and RNA helicase [Mobiluncus curtisii ATCC 43063]
          Length = 800

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           S     +  D++S  ++EQ  ++ SD      V    G+GKT + + R   LL A+  
Sbjct: 216 SRARSGQMSDIVSTIQAEQDRVIRSDLNAFLVVQGGPGTGKTAVALHRAAYLLYAHRD 273


>gi|219852121|ref|YP_002466553.1| AAA ATPase [Methanosphaerula palustris E1-9c]
 gi|219546380|gb|ACL16830.1| AAA ATPase [Methanosphaerula palustris E1-9c]
          Length = 1271

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 20  TKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKA 73
             S Q  A D     R   V    G+GKT  L   +L L+ A         +L    T +
Sbjct: 796 LTSSQRAAFDQILKNRLTLVWGPPGTGKTTFLAAAILSLVQARQEQRRGIRILVTAFTHS 855

Query: 74  AAAEMSHRVLEIITAW 89
           A   +  +V   +   
Sbjct: 856 AVENLLSKVQSQVHDL 871


>gi|325291158|ref|YP_004267339.1| UvrD/REP helicase [Syntrophobotulus glycolicus DSM 8271]
 gi|324966559|gb|ADY57338.1| UvrD/REP helicase [Syntrophobotulus glycolicus DSM 8271]
          Length = 755

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLAN 59
           S    S+   ++   + EQ L    T S    V   AGSGKT + + R+  LL   
Sbjct: 196 SRTSSSKMRTIVETIQREQDLIIRDTDSGLLLVQGMAGSGKTSVALHRIAFLLYEG 251


>gi|312875317|ref|ZP_07735325.1| putative helicase IV [Lactobacillus iners LEAF 2053A-b]
 gi|311089151|gb|EFQ47587.1| putative helicase IV [Lactobacillus iners LEAF 2053A-b]
          Length = 763

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 212 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 248


>gi|295109443|emb|CBL23396.1| Superfamily I DNA and RNA helicases [Ruminococcus obeum A2-162]
          Length = 687

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           Q +  +++ +   +   +   AGSGKT + + R+  LL     N   S +L L
Sbjct: 203 QKEQNEIIRNTKDKIMVIQGAAGSGKTSVALHRIAYLLYHDRENLKSSNVLIL 255


>gi|228964027|ref|ZP_04125157.1| DNA helicase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795679|gb|EEM43156.1| DNA helicase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 488

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          I  T+ ++   +  P  S  V    GSGK+ I++ R  + L  +    ++L +T ++
Sbjct: 6  IDLTQKQKDCVTFKPLGSLLVRGIPGSGKSTIIMAR-AQYLRKHFPDESVLIITFSR 61


>gi|212636923|ref|YP_002313448.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 432

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 21/143 (14%)

Query: 2   IYHNSFQEHSETIDLISQ------TKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVL 53
           +   SF    E +  IS+      T  +Q       R   V A+A  G+GKT      +L
Sbjct: 1   MRFESFSFAPEILRAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFSLPIL 60

Query: 54  RLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
           + +L N        +  L LT T+    E++ ++ + I  ++    + L   +  I G  
Sbjct: 61  QKMLDNPSATQRSNARALILTPTR----ELAAQIADNINDYA----KYLEVNVVTIVGGV 112

Query: 109 PNKSDMSKARHLLITILETPGGL 131
              S  +K +     I+ TPG L
Sbjct: 113 KMDSQATKLKRGADIIIATPGRL 135


>gi|299890798|ref|NP_001177749.1| probable ATP-dependent RNA helicase DDX59 isoform 1 [Rattus
           norvegicus]
 gi|149058502|gb|EDM09659.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Rattus norvegicus]
          Length = 619

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIIRALPEDKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
                 +   +   + G  P    + + +  +  ++ TPG L
Sbjct: 295 MR---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVVIATPGRL 333


>gi|325913554|ref|ZP_08175919.1| putative helicase IV [Lactobacillus iners UPII 60-B]
 gi|325477133|gb|EGC80280.1| putative helicase IV [Lactobacillus iners UPII 60-B]
          Length = 763

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 212 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 248


>gi|312872064|ref|ZP_07732139.1| putative helicase IV [Lactobacillus iners LEAF 2062A-h1]
 gi|311092357|gb|EFQ50726.1| putative helicase IV [Lactobacillus iners LEAF 2062A-h1]
          Length = 763

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 212 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 248


>gi|309807315|ref|ZP_07701284.1| putative helicase IV [Lactobacillus iners LactinV 03V1-b]
 gi|308166297|gb|EFO68507.1| putative helicase IV [Lactobacillus iners LactinV 03V1-b]
          Length = 763

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 212 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 248


>gi|309805125|ref|ZP_07699178.1| putative helicase IV [Lactobacillus iners LactinV 09V1-c]
 gi|308165579|gb|EFO67809.1| putative helicase IV [Lactobacillus iners LactinV 09V1-c]
          Length = 769

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 218 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 254


>gi|309803362|ref|ZP_07697457.1| putative helicase IV [Lactobacillus iners LactinV 11V1-d]
 gi|312871074|ref|ZP_07731176.1| putative helicase IV [Lactobacillus iners LEAF 3008A-a]
 gi|308164526|gb|EFO66778.1| putative helicase IV [Lactobacillus iners LactinV 11V1-d]
 gi|311093402|gb|EFQ51744.1| putative helicase IV [Lactobacillus iners LEAF 3008A-a]
          Length = 763

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 212 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 248


>gi|308070342|ref|YP_003871947.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305859621|gb|ADM71409.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 713

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSAN-AGSGKTHILVQRVLRLL 56
           ++Y     + +   D++S  ++EQ       ++ A V    AGSGKT + + R+  LL
Sbjct: 168 LVYRLGENKDNRLRDIVSTIQAEQDQIIRAAKNTALVIQGVAGSGKTTVALHRLAFLL 225


>gi|302191064|ref|ZP_07267318.1| superfamily I DNA/RNA helicase [Lactobacillus iners AB-1]
          Length = 763

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 212 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 248


>gi|294837415|ref|ZP_06782098.1| hypothetical protein A60131_05731 [Acinetobacter sp. 6013113]
 gi|294858024|ref|ZP_06795793.1| hypothetical protein A6013_05476 [Acinetobacter sp. 6013150]
          Length = 500

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A E
Sbjct: 12 EQAIAIDNARLGQSFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIAGE 64


>gi|259501256|ref|ZP_05744158.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
 gi|259167383|gb|EEW51878.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
          Length = 769

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 218 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 254


>gi|305680802|ref|ZP_07403609.1| ATP-dependent helicase HrpA [Corynebacterium matruchotii ATCC
           14266]
 gi|305659007|gb|EFM48507.1| ATP-dependent helicase HrpA [Corynebacterium matruchotii ATCC
           14266]
          Length = 1342

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 30  PTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
                 + A   GSGKT  +      + R  R L+ +  P  L   T  +  A E+  R+
Sbjct: 79  RDHQVVIIAGETGSGKTTQIPKICLDIGRGRRGLIGHTQPRRLAARTVAERIADELGQRI 138

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            E +       D++      K+       ++M   R+L
Sbjct: 139 GESVGYAIRFDDQVGPQTAVKLMTDGILLAEMQHDRYL 176


>gi|239930537|ref|ZP_04687490.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291438899|ref|ZP_06578289.1| ATP/GTP binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341794|gb|EFE68750.1| ATP/GTP binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 696

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ          S  V    G+GKT + + RV  LL
Sbjct: 194 DIVATIQPEQDEIVRAGLAGSVCVQGGPGTGKTAVGLHRVAYLL 237


>gi|227875242|ref|ZP_03993384.1| ATP-dependent DNA helicase rep [Mobiluncus mulieris ATCC 35243]
 gi|227844147|gb|EEJ54314.1| ATP-dependent DNA helicase rep [Mobiluncus mulieris ATCC 35243]
          Length = 774

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Q + ++++ +D      V    G+GKT + + R   LL A+  
Sbjct: 219 QAEQDRVIRADLNAFLVVQGGPGTGKTAVALHRAAYLLYAHRD 261


>gi|187476879|ref|YP_784903.1| hypothetical protein BAV0367 [Bordetella avium 197N]
 gi|115421465|emb|CAJ47971.1| conserved hypothetical phage protein [Bordetella avium 197N]
          Length = 343

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           + A AGSGKT        RL+ A       L +T+T+A    +  +V++   
Sbjct: 5  VIFAVAGSGKTT-------RLVTALDEVRRFLLVTYTEANYDNLRAKVIDRFG 50


>gi|88604386|ref|YP_504564.1| hypothetical protein Mhun_3163 [Methanospirillum hungatei JF-1]
 gi|88189848|gb|ABD42845.1| protein of unknown function DUF1703 [Methanospirillum hungatei
           JF-1]
          Length = 564

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 42/182 (23%)

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ- 134
           +EM  RV  +I  + H ++E+LS ++   Q     +  + K    L    +   G ++  
Sbjct: 152 SEMRGRVFVLIDEYDHFANELLSFDLDLFQDTLSRQGFIRKWYEALKIGTQEFVG-RIFA 210

Query: 135 ------TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI-------EEAKKSTLASIM 181
                 T+ +              +TS F IAD+     +        E+  +S +  I+
Sbjct: 211 TGVSPVTLDS--------------LTSGFNIADDLTRNPVFHEMMGFTEQEIRSLIGQIL 256

Query: 182 LDNN--EELKKAFYEILE---ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236
             +    +L +   E       S D D+    SD+I        +++  SYL R K  EK
Sbjct: 257 PADMYTPDLVRTLREYYNGYLFSEDADVRLFNSDMI--------LYYIKSYLARHKPPEK 308

Query: 237 SL 238
            L
Sbjct: 309 LL 310


>gi|307701048|ref|ZP_07638073.1| DNA or RNA helicase, Superfamily I family protein [Mobiluncus
           mulieris FB024-16]
 gi|307614043|gb|EFN93287.1| DNA or RNA helicase, Superfamily I family protein [Mobiluncus
           mulieris FB024-16]
          Length = 774

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Q + ++++ +D      V    G+GKT + + R   LL A+  
Sbjct: 219 QAEQDRVIRADLNAFLVVQGGPGTGKTAVALHRAAYLLYAHRD 261


>gi|306818504|ref|ZP_07452227.1| ATP-dependent DNA helicase rep [Mobiluncus mulieris ATCC 35239]
 gi|304648677|gb|EFM45979.1| ATP-dependent DNA helicase rep [Mobiluncus mulieris ATCC 35239]
          Length = 774

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Q + ++++ +D      V    G+GKT + + R   LL A+  
Sbjct: 219 QAEQDRVIRADLNAFLVVQGGPGTGKTAVALHRAAYLLYAHRD 261


>gi|303234373|ref|ZP_07321012.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302494489|gb|EFL54256.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|325478375|gb|EGC81490.1| hypothetical protein HMPREF9290_0501 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 674

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTHT--KAA-AAEMSHRVLE 84
           AG+GKT +L++++  L +   + S +     T      A+EM  R+ +
Sbjct: 204 AGTGKTELLMRKIKELYVGEEN-SRIA---FTCHNKVLASEMKLRIEK 247


>gi|307726373|ref|YP_003909586.1| AAA ATPase [Burkholderia sp. CCGE1003]
 gi|307586898|gb|ADN60295.1| AAA ATPase [Burkholderia sp. CCGE1003]
          Length = 461

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            + A +  R   +   AGSGKT+ L +R+ RLL
Sbjct: 169 AVAALNAGRPVMLYGPAGSGKTY-LAERLGRLL 200


>gi|240172377|ref|ZP_04751036.1| HrpA-like helicase [Mycobacterium kansasii ATCC 12478]
          Length = 1324

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL    + E++  +       V A   GSGKT  L      + R +R  + +  P  L  
Sbjct: 78  DLPISGRREEIANAVRAHQVVVVAGETGSGKTTQLPKICLELGRGIRGTIGHTQPRRLAA 137

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E+   + ++I      +D++    + K+       +++ + R LL 
Sbjct: 138 RTVAQRIADELHTALGDVIGYTVRFTDQVSDRTLVKLMTDGILLAEIQRDRRLLR 192


>gi|145611308|ref|XP_368746.2| hypothetical protein MGG_11568 [Magnaporthe oryzae 70-15]
 gi|145018606|gb|EDK02885.1| hypothetical protein MGG_11568 [Magnaporthe oryzae 70-15]
          Length = 676

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 12  ETIDL-ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           E +D  ++ ++ + +  A      A +    G+GKTH L++ +L++L        +L 
Sbjct: 209 EWLDPTLNDSQKDAIRFALASKEIALIHGPPGTGKTHTLIELILQMLKQGL---RILV 263


>gi|123123505|emb|CAM18124.1| aquarius [Mus musculus]
          Length = 1400

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|29830458|ref|NP_825092.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607570|dbj|BAC71627.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 682

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ        + S  V    G+GKT + + RV  LL
Sbjct: 180 DIVATIQPEQDEIVRSGLSGSVCVQGGPGTGKTAVGLHRVAYLL 223


>gi|85711555|ref|ZP_01042613.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit, superfamily
           I helicase [Idiomarina baltica OS145]
 gi|85694707|gb|EAQ32647.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit, superfamily
           I helicase [Idiomarina baltica OS145]
          Length = 633

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQ----RVLRLLLANAHPSTLLCL 68
           D   Q   +++  ++  RSA+  ++   G+GKT+ +V+       +   A+  P  +   
Sbjct: 167 DTSKQLDWQRMACANAARSAFSVITGGPGTGKTYTVVRLLVVLQQQFQQAHGRPLRIKLA 226

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
             T  AAA +S  + E ++       E L   +  IQ + 
Sbjct: 227 APTGKAAARLSESINEALSELQTKLPETLQPLLATIQIEA 266


>gi|294619392|ref|ZP_06698849.1| superfamily I DNA and RNA helicase [Enterococcus faecium E1679]
 gi|291594344|gb|EFF25764.1| superfamily I DNA and RNA helicase [Enterococcus faecium E1679]
          Length = 712

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 200 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 249


>gi|293568458|ref|ZP_06679778.1| superfamily I DNA and RNA helicase [Enterococcus faecium E1071]
 gi|291588794|gb|EFF20622.1| superfamily I DNA and RNA helicase [Enterococcus faecium E1071]
          Length = 257

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 199 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 248


>gi|255947606|ref|XP_002564570.1| Pc22g05360 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591587|emb|CAP97824.1| Pc22g05360 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1667

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 14/114 (12%)

Query: 9    EHSETIDLISQTKSEQLLASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST 64
              S  I        +Q  A D   SA     V    G+GKT  +   +  L+       +
Sbjct: 1130 SSSYAITDSGNLNVDQRQAIDKVMSAKDYALVLGMPGTGKTTTIAHIIRALVAQG---KS 1186

Query: 65   LLCLTHTKAAAAE----MSH---RVLEIITAWSHLSDEILSAEITKIQGKKPNK 111
            +L  ++T  A       +     RVL I        D    A++  I      +
Sbjct: 1187 VLLTSYTHTAVDNILLKIRDDDIRVLRIGATAKVHPDVQEFADLAAIPKSTIEE 1240


>gi|323484234|ref|ZP_08089603.1| hypothetical protein HMPREF9474_01354 [Clostridium symbiosum
          WAL-14163]
 gi|323402476|gb|EGA94805.1| hypothetical protein HMPREF9474_01354 [Clostridium symbiosum
          WAL-14163]
          Length = 1382

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKT 45
           S+T  + ++ + E   A    +   VSA  G+GKT
Sbjct: 17 FSDTFGMPTRVQEEAWAAIAKDKDVLVSAPTGTGKT 52


>gi|257881625|ref|ZP_05661278.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257890852|ref|ZP_05670505.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257817283|gb|EEV44611.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257827212|gb|EEV53838.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
          Length = 713

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 201 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 250


>gi|255524382|ref|ZP_05391339.1| superfamily I DNA helicase [Clostridium carboxidivorans P7]
 gi|255511939|gb|EET88222.1| superfamily I DNA helicase [Clostridium carboxidivorans P7]
          Length = 768

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANA 60
           +N ++   + I        EQ   +    +     V    G+GK+H +   +  L+    
Sbjct: 260 YNEWEGIGKDILFPLPANEEQKEITKRLANNFGVVVQGPPGTGKSHTICNLICHLMAHG- 318

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
               +L  + T  A   +S ++ E I + 
Sbjct: 319 --KRVLVTSQTDKALKVLSEKIPEEIRSL 345


>gi|213966329|ref|ZP_03394511.1| superfamily I DNA or RNA helicase [Corynebacterium amycolatum SK46]
 gi|213951035|gb|EEB62435.1| superfamily I DNA or RNA helicase [Corynebacterium amycolatum SK46]
          Length = 844

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAWVS-ANAGSGKTHILVQRVLRLL 56
           + + L+  D TR   V     G+GKT + + RV  LL
Sbjct: 236 REQDLIIRDSTRGTLVVQGGPGTGKTAVALHRVAWLL 272


>gi|213406481|ref|XP_002174012.1| F-box DNA helicase protein [Schizosaccharomyces japonicus yFS275]
 gi|212002059|gb|EEB07719.1| F-box DNA helicase protein [Schizosaccharomyces japonicus yFS275]
          Length = 873

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 17  ISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72
           +  T+ +Q + +   +      V A AG+GKT  L +       A   P   LL +    
Sbjct: 268 VGLTQEQQDIVNCELNAGEILKVKAFAGTGKTRALYE------FAKKRPNDKLLYVAF-N 320

Query: 73  AAAAE 77
            AA E
Sbjct: 321 KAAKE 325


>gi|311894460|dbj|BAJ26868.1| hypothetical protein KSE_10330 [Kitasatospora setae KM-6054]
          Length = 1526

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 6/55 (10%)

Query: 16  LISQTKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
              +T ++Q    D         V    G+GKTH +   +  LL        +L 
Sbjct: 365 FPGKTNAQQRAVLDRLQRDTGVVVQGPPGTGKTHTIANLLSALLAQG---QRVLV 416


>gi|304396019|ref|ZP_07377901.1| ATP-dependent helicase HrpA [Pantoea sp. aB]
 gi|304356388|gb|EFM20753.1| ATP-dependent helicase HrpA [Pantoea sp. aB]
          Length = 1300

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 85/249 (34%), Gaps = 56/249 (22%)

Query: 15  DLISQTKSEQLLASD-PTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLL 66
           D +  ++ +Q +A         + A   GSGKT  L +  L L      L+ +  P  L 
Sbjct: 75  DNLPVSQKQQDIAEAIRDHQVVIVAGETGSGKTTQLPKICLALGRGVTGLIGHTQPRRLA 134

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL------ 120
             T     A E+S  +   +      +D++      K+       +++ + R L      
Sbjct: 135 ARTVANRIADELSTSLGGCVGYKVRFNDQVSDLTQIKLMTDGILLAEIQQDRLLMQYDTI 194

Query: 121 ------------------LITILETPGGLKV----QTIH------AFCEA-IM----QQF 147
                             L  +L     LKV     TI        F  A ++    + +
Sbjct: 195 IIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRHFNNAPVIEVSGRTY 254

Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207
           P+E         AD+    +L  +A    +  +  ++  ++      ++ +S + +I   
Sbjct: 255 PVEVRYRPVVEEADDGDRDQL--QAIFDAVDELGRESRGDI------LIFMSGEREIRD- 305

Query: 208 ISDIISNRT 216
            +D ++ R 
Sbjct: 306 TADALNKRD 314


>gi|299771773|ref|YP_003733799.1| superfamily I DNA/RNA helicase [Acinetobacter sp. DR1]
 gi|298701861|gb|ADI92426.1| superfamily I DNA/RNA helicase [Acinetobacter sp. DR1]
          Length = 500

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A E
Sbjct: 12 EQAIAIDNARLGQSFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIAGE 64


>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 432

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 21/143 (14%)

Query: 2   IYHNSFQEHSETIDLISQ------TKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVL 53
           +   SF    E +  IS+      T  +Q       R   V A+A  G+GKT      +L
Sbjct: 1   MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 54  RLLLA-----NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
           + +L          +  L LT T+    E++ ++ + I  ++    + L  ++  + G  
Sbjct: 61  QKMLDNPSTTGRSNARALILTPTR----ELAAQIADNINDYA----KYLDMKVVTVLGGV 112

Query: 109 PNKSDMSKARHLLITILETPGGL 131
              S  +K +     I+ TPG L
Sbjct: 113 KMDSQATKLKRGADIIIATPGRL 135


>gi|321472267|gb|EFX83237.1| hypothetical protein DAPPUDRAFT_301907 [Daphnia pulex]
          Length = 1581

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66
            +  +++E L A+   +   +    G+GKT+ L  ++++ LL N           P+ +L
Sbjct: 259 GLDPSQAEALYAALTRKLVVIQGPPGTGKTY-LGLKIVQTLLHNKRYWVGVEKPKPTPIL 317

Query: 67  CLTHTKAA 74
            + +T  A
Sbjct: 318 VICYTNHA 325


>gi|311032981|ref|ZP_07711071.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 375

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 13/137 (9%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVLRLLLANAHPST 64
                +++ + + T  ++           V A A  G+GKT   V  +L  +  N   + 
Sbjct: 13  VNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPILEKVDVNNPETQ 72

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            L LT T+    E++H++ + I       D++   ++  + G +   S + K +     I
Sbjct: 73  ALILTPTR----ELAHQITKEIKNLKENIDDL---QVLAVYGGQDVNSQLKKLKGAQHVI 125

Query: 125 LETPGGL----KVQTIH 137
           + TPG L    +  TI 
Sbjct: 126 VATPGRLLDHVRRGTID 142


>gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 419

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKT--HIL--VQRVLRLLLANAHPSTLLCLTHTKA 73
           S  +S+ + A         +A  G+GKT    L  + R+ +    N  P  +L LT T+ 
Sbjct: 25  SPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNRPVRVLILTPTR- 83

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
              E++ ++ E +  +       L +E+  + G       M + R  +  ++ TPG L
Sbjct: 84  ---ELAAQIGESVNKYGAHLHPRLKSEV--VFGGVKINPQMMRLRGGVDILVATPGRL 136


>gi|291562400|emb|CBL41216.1| Superfamily I DNA and RNA helicases and helicase subunits
           [butyrate-producing bacterium SS3/4]
          Length = 972

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 15  DLISQTKSEQLLASDPTRSA-WVSANAGSGKTHI---LVQRVLRLLLANAHPSTLLCL 68
           D ++ ++ E +  +  + S   +    G+GKT +   +V+R+L  +      S +L +
Sbjct: 502 DTLNVSQREAIRKALYSDSISLIQGPPGTGKTTVIKEIVRRILMQINKFDDTSRILVV 559


>gi|269978131|ref|ZP_06185081.1| ATP-dependent DNA helicase rep [Mobiluncus mulieris 28-1]
 gi|269933640|gb|EEZ90224.1| ATP-dependent DNA helicase rep [Mobiluncus mulieris 28-1]
          Length = 774

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Q + ++++ +D      V    G+GKT + + R   LL A+  
Sbjct: 219 QAEQDRVIRADLNAFLVVQGGPGTGKTAVALHRAAYLLYAHRD 261


>gi|255324632|ref|ZP_05365749.1| superfamily I DNA or RNA helicase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298538|gb|EET77838.1| superfamily I DNA or RNA helicase [Corynebacterium
           tuberculostearicum SK141]
          Length = 741

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + ++++  +      V    G+GKT + + RV  LL
Sbjct: 207 QREQDEIIRDNTRGVMVVEGGPGTGKTAVALHRVAYLL 244


>gi|256851882|ref|ZP_05557270.1| superfamily I DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661857|ref|ZP_05862767.1| superfamily I DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|282934457|ref|ZP_06339714.1| superfamily I DNA/RNA helicase [Lactobacillus jensenii 208-1]
 gi|297205507|ref|ZP_06922903.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
 gi|256615840|gb|EEU21029.1| superfamily I DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547326|gb|EEX23306.1| superfamily I DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|281301469|gb|EFA93756.1| superfamily I DNA/RNA helicase [Lactobacillus jensenii 208-1]
 gi|297150085|gb|EFH30382.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
          Length = 764

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  + +     V   AGSGKT  ++QR+  LL
Sbjct: 213 KEQNKIIRNTSADLLFVQGAAGSGKTSAILQRIAYLL 249


>gi|227548126|ref|ZP_03978175.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079788|gb|EEI17751.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 772

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAWVS-ANAGSGKTHILVQRVLRLL 56
           + +  +  D TR   V     G+GKT + + RV  LL
Sbjct: 214 REQDEIIRDATRGVLVVQGGPGTGKTAVALHRVAYLL 250


>gi|218289045|ref|ZP_03493282.1| ATP-dependent DNA helicase rep [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240870|gb|EED08048.1| ATP-dependent DNA helicase rep [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 648

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y  S +  ++  ++++  + +Q +      S    V+  AGSGKT   +QR   LL  
Sbjct: 61  LMYALSRRSDAQMHNIVATIQRQQNVVIRDDESPALLVTGAAGSGKTSAALQRAAYLLYK 120

Query: 59  N 59
           +
Sbjct: 121 H 121


>gi|294877934|ref|XP_002768200.1| DNA-binding protein SMUBP-2, putative [Perkinsus marinus ATCC
           50983]
 gi|239870397|gb|EER00918.1| DNA-binding protein SMUBP-2, putative [Perkinsus marinus ATCC
           50983]
          Length = 970

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 12/127 (9%)

Query: 15  DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           D +++ +   +    D +  A V    G+GKT +LV  +L  +  +     LL    +  
Sbjct: 205 DNLNEVQRRAVRTCLDASPLALVHGPPGTGKTTVLVSYILEAIQRH---QKLLVCAPSNV 261

Query: 74  AAAEMSHRVLE--------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           A   +  RV           I   + +   +    +     +   +  +   R  + + L
Sbjct: 262 AVDNLLERVTAVGGISNVVRIGHPARVEKGLERYTLDAKLAQNDQQQLVGDIRKEIDSCL 321

Query: 126 ETPGGLK 132
           +     K
Sbjct: 322 KKSKKAK 328


>gi|238060445|ref|ZP_04605154.1| hypothetical protein MCAG_01411 [Micromonospora sp. ATCC 39149]
 gi|237882256|gb|EEP71084.1| hypothetical protein MCAG_01411 [Micromonospora sp. ATCC 39149]
          Length = 661

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  A     S    VS   G+GKT + + R   LL
Sbjct: 134 DIVATIQREQDEAIRSPASGVTIVSGGPGTGKTAVALHRAAYLL 177


>gi|229010443|ref|ZP_04167647.1| UvrD/REP helicase [Bacillus mycoides DSM 2048]
 gi|228750863|gb|EEM00685.1| UvrD/REP helicase [Bacillus mycoides DSM 2048]
          Length = 778

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229056772|ref|ZP_04196174.1| UvrD/REP helicase [Bacillus cereus AH603]
 gi|228720566|gb|EEL72130.1| UvrD/REP helicase [Bacillus cereus AH603]
          Length = 778

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229131943|ref|ZP_04260808.1| UvrD/REP helicase [Bacillus cereus BDRD-ST196]
 gi|228651534|gb|EEL07504.1| UvrD/REP helicase [Bacillus cereus BDRD-ST196]
          Length = 778

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|149920809|ref|ZP_01909272.1| Superfamily I DNA/RNA helicase [Plesiocystis pacifica SIR-1]
 gi|149818327|gb|EDM77779.1| Superfamily I DNA/RNA helicase [Plesiocystis pacifica SIR-1]
          Length = 831

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           S   D   + +    +A      A +    GSGKT  + + +++L   N     +L +  
Sbjct: 143 SALRDGTDEQRRFVEIAMGTPDFALLEGPPGSGKTTAICELIVQLAREN---KRVLLVAS 199

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEI 101
           T  A   +  R++            +L   I
Sbjct: 200 TNVAVDNVLERLIAWEEQLPEEDRFVLPVRI 230


>gi|41410191|ref|NP_963027.1| hypothetical protein MAP4093c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41399025|gb|AAS06643.1| hypothetical protein MAP_4093c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 378

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183
            L       + T H FC+ +++   +  +  +   + D     +L+ E       +    
Sbjct: 22  ALAGFDAATIATTHQFCQLVLRSLGVAGDTAAGVTLLDSLD--ELVAEIVDDLYLAHFGQ 79

Query: 184 NNEELKKAFYEILEISND 201
           ++++    + E L ++ D
Sbjct: 80  DHDDPVLHYREALRLARD 97


>gi|325911301|ref|ZP_08173714.1| putative helicase IV [Lactobacillus iners UPII 143-D]
 gi|329920802|ref|ZP_08277389.1| putative helicase IV [Lactobacillus iners SPIN 1401G]
 gi|325476861|gb|EGC80014.1| putative helicase IV [Lactobacillus iners UPII 143-D]
 gi|328935582|gb|EGG32049.1| putative helicase IV [Lactobacillus iners SPIN 1401G]
          Length = 763

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + T     V  +AGSGKT  ++QR+  LL
Sbjct: 212 REQNKIIRNTTADLLFVQGSAGSGKTSAILQRIAYLL 248


>gi|296491961|ref|YP_003662428.1| hypothetical protein XNC1_p0149 [Xenorhabdus nematophila ATCC
          19061]
 gi|289176848|emb|CBJ93017.1| Putative DNA helicase (fragment) [Xenorhabdus nematophila ATCC
          19061]
          Length = 121

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRL 55
          L   T  + L+         V A AG+GKT  LV+        R+L L
Sbjct: 11 LPPDTPEQSLITQYKGPRLVVKAYAGTGKTTTLVKYAHNNLNSRILYL 58


>gi|257886255|ref|ZP_05665908.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257822111|gb|EEV49241.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 713

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 201 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 250


>gi|257879000|ref|ZP_05658653.1| ATP-dependent DNA helicase [Enterococcus faecium 1,230,933]
 gi|257813228|gb|EEV41986.1| ATP-dependent DNA helicase [Enterococcus faecium 1,230,933]
          Length = 446

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 199 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 248


>gi|284036831|ref|YP_003386761.1| PhoH family protein [Spirosoma linguale DSM 74]
 gi|283816124|gb|ADB37962.1| PhoH family protein [Spirosoma linguale DSM 74]
          Length = 321

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 18  SQTKSEQLLASDPTRSAWVSA--NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA- 74
           ++T +++ L     +   V A   AG+GKT+  V   +R L  N     ++    T+ A 
Sbjct: 116 AKTDNQKRLVEAAEKHDLVFAVGPAGTGKTYTAVAIAVRAL-KNKEVKKIII---TRPAV 171

Query: 75  -AAE--------MSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
            A E        +  ++   +       D+++ AE  K   + 
Sbjct: 172 EAGENLGFLPGDLKEKIDPYLRPIYDALDDMIPAEKLKFYTEN 214


>gi|229139448|ref|ZP_04268019.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST26]
 gi|228643995|gb|EEL00256.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST26]
          Length = 347

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|229165977|ref|ZP_04293742.1| UvrD/REP helicase [Bacillus cereus AH621]
 gi|228617530|gb|EEK74590.1| UvrD/REP helicase [Bacillus cereus AH621]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|169824646|ref|YP_001692257.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328]
 gi|167831451|dbj|BAG08367.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328]
          Length = 367

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
          +    A AG+GKT ++V+  L+          +L  T+T A
Sbjct: 3  NKLYIAAAGAGKTTLIVKDALK-----NKDKKILITTYTNA 38


>gi|158317176|ref|YP_001509684.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158112581|gb|ABW14778.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 821

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +  +      + +  +S  AG+GKT + + R  RL  A A P  ++  T T+
Sbjct: 298 EQRRYAYVRTSGAYRLSGGAGTGKTVVALHRARRLATAPAAP-RVVLTTFTR 348


>gi|42519709|ref|NP_965639.1| hypothetical protein LJ0616 [Lactobacillus johnsonii NCC 533]
 gi|41583998|gb|AAS09605.1| hypothetical protein LJ_0616 [Lactobacillus johnsonii NCC 533]
          Length = 764

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2   IYHNSFQEHS--ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  N   E S  +   +++  + EQ      T +   +V   AGSGKT  ++QRV  LL
Sbjct: 190 MLLNVLNEKSSTQMKSIVTTIQREQNKIIRNTSADLLFVQGAAGSGKTSAIMQRVAYLL 248


>gi|150017790|ref|YP_001310044.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149904255|gb|ABR35088.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 755

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 12  ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL---LANAHPSTLL 66
           +  ++++  + EQ       ++    V  +AGSGKT I + R+  L+     +     +L
Sbjct: 191 KLKEVVATIQKEQNEIIRWPKNLPIIVQGSAGSGKTTIALHRLAYLIYRYKESMSGDEIL 250

Query: 67  CL 68
            L
Sbjct: 251 VL 252


>gi|318062361|ref|ZP_07981082.1| ATP/GTP binding protein [Streptomyces sp. SA3_actG]
          Length = 557

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 9   EHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
                 D+ +  + EQ  L+ +    S  V    G+GKT + + RV  LL   AHP  L
Sbjct: 58  RSGPLRDIAATLQPEQDALVRAPLDVSVCVQGAPGTGKTAVGLHRVAYLLY--AHPRRL 114


>gi|314939939|ref|ZP_07847141.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314941517|ref|ZP_07848404.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314953810|ref|ZP_07856673.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314993598|ref|ZP_07858952.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314997763|ref|ZP_07862676.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313588207|gb|EFR67052.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313591944|gb|EFR70789.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313594145|gb|EFR72990.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313599669|gb|EFR78512.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313640821|gb|EFS05401.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
          Length = 711

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 199 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 248


>gi|298385198|ref|ZP_06994757.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 1_1_14]
 gi|298262342|gb|EFI05207.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 1_1_14]
          Length = 686

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           + +  +  +      +    AGSGKT I + R+  LL           +L +
Sbjct: 205 REQNRIIRNEDTPVLIIQGVAGSGKTSIALHRIAYLLYTQKGKISSKDILII 256


>gi|311740501|ref|ZP_07714328.1| DNA or RNA helicase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304021|gb|EFQ80097.1| DNA or RNA helicase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 741

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + ++++  +      V    G+GKT + + RV  LL
Sbjct: 207 QREQDEIIRDNTRGVMVVEGGPGTGKTAVALHRVAYLL 244


>gi|184152846|ref|YP_001841187.1| DNA helicase [Lactobacillus reuteri JCM 1112]
 gi|183224190|dbj|BAG24707.1| DNA helicase [Lactobacillus reuteri JCM 1112]
          Length = 773

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ      TRS    V   AGSGKT  ++QR+  LL
Sbjct: 200 QNDQYMHNIVATIQKEQNDIIRDTRSDLLLVQGVAGSGKTSAILQRIAYLL 250


>gi|13278468|gb|AAH04036.1| Fbxo18 protein [Mus musculus]
          Length = 769

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 17  ISQTKSEQLLASDPTRSAWVS---ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           I  T  +QL+ +       V    A AG+GKT  LV+            S  L +T  K
Sbjct: 165 IQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVK-----YAEKWSQSRFLYVTFNK 218


>gi|69245779|ref|ZP_00603622.1| conserved hypothetical protein [Enterococcus faecium DO]
 gi|258615366|ref|ZP_05713136.1| hypothetical protein EfaeD_06593 [Enterococcus faecium DO]
 gi|293562880|ref|ZP_06677352.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|294622714|ref|ZP_06701673.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|314950267|ref|ZP_07853550.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|68195574|gb|EAN10015.1| conserved hypothetical protein [Enterococcus faecium DO]
 gi|291597852|gb|EFF28985.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|291605204|gb|EFF34666.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|313643406|gb|EFS07986.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 711

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 199 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 248


>gi|329667960|gb|AEB93908.1| hypothetical protein LJP_1592c [Lactobacillus johnsonii DPC 6026]
          Length = 772

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2   IYHNSFQEHS--ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  N   E S  +   +++  + EQ      T +   +V   AGSGKT  ++QRV  LL
Sbjct: 198 MLLNVLNEKSSTQMKSIVTTIQREQNKIIRNTSADLLFVQGAAGSGKTSAIMQRVAYLL 256


>gi|312140063|ref|YP_004007399.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311889402|emb|CBH48718.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 863

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 22/81 (27%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILV----------QRVLRLLLANAHPSTLLCLTHTK 72
           + + A +      +SA AG+GKT +LV          + +  L+L  A            
Sbjct: 49  DAVAAREVPDKILISAAAGTGKT-VLVADWLARETAAREIAWLVLGPADND--------- 98

Query: 73  AAAAEMSHRVLEIITAWSHLS 93
             A E+  RV+ +    S   
Sbjct: 99  --AEELRRRVVGLWERLSSAG 117


>gi|325674463|ref|ZP_08154151.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325554723|gb|EGD24397.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 835

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 22/81 (27%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILV----------QRVLRLLLANAHPSTLLCLTHTK 72
          + + A +      +SA AG+GKT +LV          + +  L+L  A            
Sbjct: 21 DAVAAREVPDKILISAAAGTGKT-VLVADWLARETAAREIAWLVLGPADND--------- 70

Query: 73 AAAAEMSHRVLEIITAWSHLS 93
            A E+  RV+ +    S   
Sbjct: 71 --AEELRRRVVGLWERLSSAG 89


>gi|268320075|ref|YP_003293731.1| hypothetical protein FI9785_1611 [Lactobacillus johnsonii FI9785]
 gi|262398450|emb|CAX67464.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 764

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2   IYHNSFQEHS--ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  N   E S  +   +++  + EQ      T +   +V   AGSGKT  ++QRV  LL
Sbjct: 190 MLLNVLNEKSSTQMKSIVTTIQREQNKIIRNTSADLLFVQGAAGSGKTSAIMQRVAYLL 248


>gi|238853273|ref|ZP_04643657.1| superfamily I DNA and RNA helicase [Lactobacillus gasseri 202-4]
 gi|238834067|gb|EEQ26320.1| superfamily I DNA and RNA helicase [Lactobacillus gasseri 202-4]
          Length = 764

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2   IYHNSFQEHS--ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  N   E S  +   +++  + EQ      T +   +V   AGSGKT  ++QRV  LL
Sbjct: 190 MLLNVLNEKSSTQMKSIVTTIQREQNKIIRNTSADLLFVQGAAGSGKTSAIMQRVAYLL 248


>gi|220934942|ref|YP_002513841.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996252|gb|ACL72854.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
          Length = 619

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 18/138 (13%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           NS  E    +  +   + EQL  S       +   AGSGKT IL  R L L      P  
Sbjct: 230 NSADELIPDLIKVMDMQQEQLARSLGQGHRVIHGVAGSGKTLILGYRCLYLARLLHKP-- 287

Query: 65  LLCLTH--TKAAAAEMSHRVLEIITAWSHLS-------DEILSAEITKIQGKKPNKSDMS 115
           +L +    T AA      R+  ++ A +           +    ++ +   ++P   D  
Sbjct: 288 ILVICFNITLAA------RLRGMMEAQAINDRVHVYHFHDWCGEQLKRYHVQRPAPGD-R 340

Query: 116 KARHLLITILETPGGLKV 133
               L+  ++E     ++
Sbjct: 341 YLEELVARVIEATDKGQI 358


>gi|293557034|ref|ZP_06675594.1| conserved hypothetical protein [Enterococcus faecium E1039]
 gi|291600854|gb|EFF31146.1| conserved hypothetical protein [Enterococcus faecium E1039]
          Length = 616

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 199 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 248


>gi|255319693|ref|ZP_05360901.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter radioresistens
           SK82]
 gi|262380025|ref|ZP_06073180.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter radioresistens
           SH164]
 gi|255303222|gb|EET82431.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter radioresistens
           SK82]
 gi|262298219|gb|EEY86133.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter radioresistens
           SH164]
          Length = 586

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98
             G+GKT+ L  R++ +L        +     T  AA  M   +         L   +++
Sbjct: 147 GPGTGKTYTLA-RIIAVLNQVIPDIRIAMAAPTGKAAQRMQEALRHSFQDPKLLESGLVT 205

Query: 99  AEIT 102
             + 
Sbjct: 206 QSLQ 209


>gi|256070762|ref|XP_002571711.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238656858|emb|CAZ27941.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 453

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 36  VSANA--GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A A  GSGKT   +  +L+ L+    P   L +T T+    E++H++ E     + + 
Sbjct: 41  VVACAKTGSGKTAAFLIPILQSLMTELKPLYALIITPTR----ELAHQIGEQAAGLNLIQ 96

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ--QFPLEA 151
            E L   +    G+      +  AR   I ++ TPG L           +++      EA
Sbjct: 97  GEPLCNVLVITGGRSIVHQSIDLARSPHI-VVSTPGRL---------ADLLRTQTAAQEA 146

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192
           +  +            +++EA    L     ++   + KA 
Sbjct: 147 DTENKPEWTLSRTKVVVLDEA-DRLLEDNFGEDLNTILKAL 186


>gi|227544744|ref|ZP_03974793.1| DNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300909010|ref|ZP_07126473.1| ATP-dependent DNA helicase [Lactobacillus reuteri SD2112]
 gi|227185284|gb|EEI65355.1| DNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300894417|gb|EFK87775.1| ATP-dependent DNA helicase [Lactobacillus reuteri SD2112]
          Length = 772

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ      TRS    V   AGSGKT  ++QR+  LL
Sbjct: 199 QNDQYMHNIVATIQKEQNDIIRDTRSDLLLVQGVAGSGKTSAILQRIAYLL 249


>gi|164656076|ref|XP_001729166.1| hypothetical protein MGL_3633 [Malassezia globosa CBS 7966]
 gi|159103056|gb|EDP41952.1| hypothetical protein MGL_3633 [Malassezia globosa CBS 7966]
          Length = 966

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 12/68 (17%)

Query: 14  IDLISQTKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCL 68
           +    +   EQ    D     T    V A AG+GKT  L      L  A   P    L +
Sbjct: 233 LSAPDELTEEQAKFVDFHVRRTDLVCVQAYAGTGKTRSL------LAYAQRRPHQRFLYI 286

Query: 69  THTKAAAA 76
           T   AAAA
Sbjct: 287 TF-NAAAA 293


>gi|148695922|gb|EDL27869.1| aquarius, isoform CRA_c [Mus musculus]
          Length = 1400

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|148543438|ref|YP_001270808.1| superfamily I DNA/RNA helicase-like protein [Lactobacillus reuteri
           DSM 20016]
 gi|227363587|ref|ZP_03847704.1| DNA helicase [Lactobacillus reuteri MM2-3]
 gi|325681781|ref|ZP_08161300.1| ATP-dependent DNA helicase [Lactobacillus reuteri MM4-1A]
 gi|148530472|gb|ABQ82471.1| Superfamily I DNA and RNA helicase-like protein [Lactobacillus
           reuteri DSM 20016]
 gi|227071383|gb|EEI09689.1| DNA helicase [Lactobacillus reuteri MM2-3]
 gi|324978872|gb|EGC15820.1| ATP-dependent DNA helicase [Lactobacillus reuteri MM4-1A]
          Length = 772

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ      TRS    V   AGSGKT  ++QR+  LL
Sbjct: 199 QNDQYMHNIVATIQKEQNDIIRDTRSDLLLVQGVAGSGKTSAILQRIAYLL 249


>gi|12850377|dbj|BAB28694.1| unnamed protein product [Mus musculus]
          Length = 337

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R    +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIIRAFSEDKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
                 +   +   + G  P    + + R  +  I+ TPG L
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRL 333


>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 578

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTL--LCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL     A    +  L LT 
Sbjct: 22  DTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      + G  P    + K RH +  ++ TPG 
Sbjct: 82  TR----ELAAQVSESVETYG----KYLPLRSAVVFGGVPINPQIQKLRHGVDVLVATPGR 133

Query: 131 L 131
           L
Sbjct: 134 L 134


>gi|296214256|ref|XP_002753616.1| PREDICTED: intron-binding protein aquarius [Callithrix jacchus]
          Length = 1492

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|227889354|ref|ZP_04007159.1| possible DNA helicase [Lactobacillus johnsonii ATCC 33200]
 gi|227850156|gb|EEJ60242.1| possible DNA helicase [Lactobacillus johnsonii ATCC 33200]
          Length = 772

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2   IYHNSFQEHS--ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  N   E S  +   +++  + EQ      T +   +V   AGSGKT  ++QRV  LL
Sbjct: 198 MLLNVLNEKSSTQMKSIVTTIQREQNKIIRNTSADLLFVQGAAGSGKTSAIMQRVAYLL 256


>gi|224477789|ref|YP_002635395.1| Superfamily I DNA and RNA helicases [Staphylococcus carnosus
          subsp. carnosus TM300]
 gi|222422396|emb|CAL29210.1| Superfamily I DNA and RNA helicases [Staphylococcus carnosus
          subsp. carnosus TM300]
          Length = 510

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89
           ++  ++ +AG GK+ + + R+  L  +  +P   ++ LT  KA   +M  ++  I    
Sbjct: 19 NQNMVITGSAGCGKSLLAIYRIYWL--SKVYPNDRIVLLTFNKAVNQDMISKIELIAAQR 76

Query: 90 SHLSDEIL 97
          +      L
Sbjct: 77 NEAVPNNL 84


>gi|149199535|ref|ZP_01876569.1| putative DNA helicase [Lentisphaera araneosa HTCC2155]
 gi|149137331|gb|EDM25750.1| putative DNA helicase [Lentisphaera araneosa HTCC2155]
          Length = 697

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
             +L+  D   S  VS  AG+GKT   + R+  L         ++  T+T+A
Sbjct: 242 QRKLVNGDFKGSVKVSGGAGTGKTVAALHRLKFLSETKQANEKIVFTTYTRA 293


>gi|29347300|ref|NP_810803.1| hypothetical protein BT_1890 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339199|gb|AAO76997.1| ATP-dependent DNA helicase replicase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 686

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL---LANAHPSTLLCL 68
           + +  +  +      +    AGSGKT I + R+  LL           +L +
Sbjct: 205 REQNRIIRNEDTPVLIIQGVAGSGKTSIALHRIAYLLYAQKGKISSKDILII 256


>gi|78045781|ref|YP_361956.1| hypothetical protein XCV0225 [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78034211|emb|CAJ21856.1| hypothetical protein XCV0225 [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
          Length = 343

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           A AGSGKT +LV    +L L        L +T+T A    +  ++++   
Sbjct: 7  LAVAGSGKTSMLVS---KLDLD----RRFLIVTYTDANIENIRQKIIQKFG 50


>gi|56419920|ref|YP_147238.1| hypothetical protein GK1385 [Geobacillus kaustophilus HTA426]
 gi|56379762|dbj|BAD75670.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 556

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 38/118 (32%)

Query: 13  TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            +  I+ +  +  +         ++ +AG+GK+  L+ ++L+++     P  +L  +   
Sbjct: 31  LLPNITLSPEQISVVQQDEDQMLINGSAGTGKSLTLIYKLLKVMEQENEPKRILYCSFNT 90

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
               +   R+ +            L  E       +  +         L   LE    
Sbjct: 91  MLVEDARKRIEQSSKFHEIKDKHTLHMETFHYMAARILREIGFPNAEFLRINLENLRR 148


>gi|322505518|emb|CAM42951.2| putative DEAD/DEAH box helicase-like protein [Leishmania
          braziliensis MHOM/BR/75/M2904]
          Length = 1678

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 12 ETIDLIS---QTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
          E +D +     TK ++ +         +  V+A  GSGKT +L   +LRL  +   P  
Sbjct: 11 ELLDFLPHHRFTKVQEAVIPALFTNDLNCLVAAPTGSGKTMLLEVAMLRLFRSVLAPER 69


>gi|291550424|emb|CBL26686.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14]
          Length = 689

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 21  KSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAH---PSTLLCL 68
           K +  +  +      V   A GSGKT I + R+  LL         S +L L
Sbjct: 210 KEQNAIIRNTKDRILVIQGAAGSGKTSIALHRIAYLLYHERDTLKSSNILIL 261


>gi|291403285|ref|XP_002718043.1| PREDICTED: aquarius [Oryctolagus cuniculus]
          Length = 1492

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|257486929|ref|ZP_05640970.1| hypothetical protein PsyrptA_26880 [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|331013438|gb|EGH93494.1| hypothetical protein PSYTB_28017 [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 478

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          +  T+ +            V A AG+GKT  LV
Sbjct: 1  MQWTEEQLPAIHSFANKLLVQAFAGTGKTTTLV 33


>gi|242399980|ref|YP_002995405.1| DNA helicase, UvrD/REP family [Thermococcus sibiricus MM 739]
 gi|242266374|gb|ACS91056.1| DNA helicase, UvrD/REP family [Thermococcus sibiricus MM 739]
          Length = 716

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++Q++ E +  +  +   ++     G+GKT  LV+ +++ +      + +L    +  A 
Sbjct: 230 LNQSQKEAVSYALGSEDFFLIHGPFGTGKTRTLVELIVQEVKRG---NKILATAESNVAV 286

Query: 76  AEMSHRVLEIIT---------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             +  R+   +             HL +  L+ ++   +  +  +   +KA  L
Sbjct: 287 DNLVERLWGKVKLVRLGHPSRVSVHLKESTLAFQVESHERYRKVRELRNKAERL 340


>gi|257061742|ref|YP_003139630.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
 gi|256591908|gb|ACV02795.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
          Length = 984

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 48/207 (23%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85
            +   +  +AGSGK++    L  +++ L     +    ++L +T           R    
Sbjct: 292 GQKYLIQHSAGSGKSNTIAWLAHQLVSLHEREDNRVFDSILVIT----------DR---- 337

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
                   D+ L   + + +       ++ K    L   LE    + V T        +Q
Sbjct: 338 -----KALDKQLQRNLKQFETTSGVVENIDKTSRQLKEALENGKNIIVTT--------LQ 384

Query: 146 QFPLEANI-----TSHFA-IADEEQSKKLIEEAK--KSTLASIMLDNNEELKKAFYEILE 197
           +FP   +         FA I DE  S +  E ++  K+ L++  L+  E  ++   + +E
Sbjct: 385 KFPGVIDQINSLKGQKFAIIIDEAHSSQTGENSRQLKTVLSTQTLEEAETQEQDIEDYIE 444

Query: 198 ISNDEDIETLISDIISNRTALKLIFFF 224
                     I +    R  L  + +F
Sbjct: 445 DR--------IEEAARTRGNLPNLSYF 463


>gi|159464225|ref|XP_001690342.1| hypothetical protein CHLREDRAFT_127992 [Chlamydomonas reinhardtii]
 gi|158279842|gb|EDP05601.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 640

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 60/185 (32%), Gaps = 27/185 (14%)

Query: 16  LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            +  ++ + + LA      A V    G+GKT  +V+ +L+ +      S +L  + +  A
Sbjct: 185 GLDDSQRQAVTLALSAKDLALVHGPPGTGKTTAVVEIILQEVARG---SRVLAASASNIA 241

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
              +  R++        +     +  +  +         +      L             
Sbjct: 242 VDNLVERLVRANPKLKLVRMGHPARLLPAVLDSSLEAHVLRSDNSALARDCRAE------ 295

Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
            I +    +++       +       D  + ++L  +     L  +  +  +  + A  E
Sbjct: 296 -IKSINARLLK-------LGPR----DRAERRELRGD-----LRRLGKEERQRQEAAVAE 338

Query: 195 ILEIS 199
           +++ +
Sbjct: 339 VIKGA 343


>gi|154343135|ref|XP_001567513.1| DEAD/DEAH box helicase-like protein [Leishmania braziliensis
          MHOM/BR/75/M2904]
          Length = 1678

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 12 ETIDLIS---QTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
          E +D +     TK ++ +         +  V+A  GSGKT +L   +LRL  +   P  
Sbjct: 11 ELLDFLPHHRFTKVQEAVIPALFTNDLNCLVAAPTGSGKTMLLEVAMLRLFRSVLAPER 69


>gi|27502844|gb|AAH42479.1| Aquarius [Mus musculus]
          Length = 1481

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRTLIVTHSNQALNQLF 863

Query: 80  HRVLEI 85
            +++ +
Sbjct: 864 EKIMAL 869


>gi|68536327|ref|YP_251032.1| hypothetical protein jk1248 [Corynebacterium jeikeium K411]
 gi|68263926|emb|CAI37414.1| hypothetical protein jk1248 [Corynebacterium jeikeium K411]
          Length = 365

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
          ++  + A AG+GKT  +V+R  +           L +T+T+    E+  R+
Sbjct: 2  KNEALIAVAGAGKTEGIVRRFAK------AEKKTLFITYTRTGQEELKSRL 46


>gi|75758815|ref|ZP_00738929.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493719|gb|EAO56821.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 741

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 248 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 296


>gi|331702165|ref|YP_004399124.1| DNA helicase [Lactobacillus buchneri NRRL B-30929]
 gi|329129508|gb|AEB74061.1| DNA helicase (putative) [Lactobacillus buchneri NRRL B-30929]
          Length = 764

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D       V  +AGSGKT  ++QRV  LL
Sbjct: 212 KEQNQIIRDTDSDLLFVQGSAGSGKTAAVLQRVAFLL 248


>gi|330828357|ref|YP_004391309.1| ATP-dependent helicase HrpB [Aeromonas veronii B565]
 gi|328803493|gb|AEB48692.1| ATP-dependent helicase HrpB [Aeromonas veronii B565]
          Length = 815

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 80/217 (36%), Gaps = 35/217 (16%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            A D   S  + A  G+GK+ +L    L L+  N  P  ++ L               E 
Sbjct: 15  AALDSHTSVILQAPPGAGKSTLLP---LELVRQNRLPGRIIML---------------EP 56

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
               +      L+ ++ +  G++       ++R    T LE      V T       ++Q
Sbjct: 57  RRLAARNIATFLARQLGEKVGERIGLRVRGESRTSSATRLEIVTEG-VLT------RMLQ 109

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED-- 203
           Q P    ++    I DE   + L  +   +      +++ + L+     ++  +  +   
Sbjct: 110 QDPELTGVS--LVIFDEFHERSLHADTALAF----AIESQQGLRDDLKLLVMSATLDGMA 163

Query: 204 IETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSL 238
           +ETL+ D    R+  +   I + +    R++ +E  +
Sbjct: 164 LETLLPDAPVVRSEGRGFPIDYHYRPANRQQWLEPQV 200


>gi|300773891|ref|ZP_07083760.1| DNA helicase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760062|gb|EFK56889.1| DNA helicase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 634

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLRLLL 57
           ++ +        I+ I+     QL A +          V    G+GKT  LVQ +  LL 
Sbjct: 164 VHDSDHMVSDHQINSITGLNEYQLKAVNQIIASPHLTIVHGPPGTGKTTTLVQGIKALLQ 223

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNK 111
              +P  +L    +  A   ++ ++ E       I     +S+++    +       P +
Sbjct: 224 K--YPDQILVTAPSNTAVDLLTEKLHETGVKVVRIGNPVKVSEQLHELTLDGKLESHPMQ 281

Query: 112 SDMSKARH 119
            ++   R 
Sbjct: 282 KELKTIRK 289


>gi|228899722|ref|ZP_04063970.1| UvrD/REP helicase [Bacillus thuringiensis IBL 4222]
 gi|228859904|gb|EEN04316.1| UvrD/REP helicase [Bacillus thuringiensis IBL 4222]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|163938952|ref|YP_001643836.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
 gi|163861149|gb|ABY42208.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|297194086|ref|ZP_06911484.1| ATP-dependent helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152104|gb|EDY64831.2| ATP-dependent helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 798

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 8   QEHSETI-DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           Q  S T+ D+++  ++EQ L+   P  S  +V    G+GKT + + R   LL
Sbjct: 227 QARSHTMRDIVASIQAEQDLVIRAPAASVTYVEGGPGTGKTAVALHRAAYLL 278


>gi|257896647|ref|ZP_05676300.1| ATP-dependent DNA helicase [Enterococcus faecium Com12]
 gi|257833212|gb|EEV59633.1| ATP-dependent DNA helicase [Enterococcus faecium Com12]
          Length = 713

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 201 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 250


>gi|194882325|ref|XP_001975262.1| GG20658 [Drosophila erecta]
 gi|190658449|gb|EDV55662.1| GG20658 [Drosophila erecta]
          Length = 811

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 10  HSETIDLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +S       Q ++ Q + + P+      +    G+GKT  +V+ +L+L L     S +L 
Sbjct: 303 NSTIFSNAEQLEAVQRIVAGPSTQGPYILFGPPGTGKTTTIVEAILQLRLQKPQ-SRILV 361

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI 101
              + +A   ++ ++ E I +   L       ++
Sbjct: 362 TAGSNSACDTIALKLCEYIKSNPRLQKHFARQKL 395


>gi|68491839|ref|XP_710287.1| hypothetical protein CaO19.6614 [Candida albicans SC5314]
 gi|46431464|gb|EAK91023.1| hypothetical protein CaO19.6614 [Candida albicans SC5314]
          Length = 1422

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 26  LASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANAH--------PSTLLCLTHTKAAAA 76
           +A  PTRS  + A+ G GKT + LV  +   +             P   L        A 
Sbjct: 783 VAFTPTRSRAILAHTGFGKTFVFLVPMIAYKIGGGGEHFVHLVLMPYRFL--------AE 834

Query: 77  EMSHRVLEII 86
           +M  R+   +
Sbjct: 835 QMKTRLRRYL 844


>gi|317048243|ref|YP_004115891.1| ATP-dependent helicase HrpA [Pantoea sp. At-9b]
 gi|316949860|gb|ADU69335.1| ATP-dependent helicase HrpA [Pantoea sp. At-9b]
          Length = 1298

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 21  KSEQLLASD-PTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLCLTHTK 72
           + +Q +A         + A   GSGKT  L +  L L      L+ +  P  L   T   
Sbjct: 81  QKQQAIAEAIRDHQVVIVAGETGSGKTTQLPKICLALGRGVKGLIGHTQPRRLAARTVAN 140

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             A E+   +   I      +D++      K+       +++ + R LL 
Sbjct: 141 RIADELETSLGGCIGYKVRFNDQVSDTTQVKLMTDGILLAEIQQDRLLLQ 190


>gi|303318509|ref|XP_003069254.1| Zinc knuckle domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
 gi|240108940|gb|EER27109.1| Zinc knuckle domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
          Length = 2141

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 40/138 (28%), Gaps = 17/138 (12%)

Query: 6    SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            S +    T DL          A D      +    GSGKT  +V  V  LL        +
Sbjct: 1286 SVKHILGTYDLNLAQAKAVKSAMDNDAFTLIQGPPGSGKTKTIVALVGALLTPTLSEHRI 1345

Query: 66   -----------------LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
                             L    + AA  E+  R  E +      + +I    + +     
Sbjct: 1346 APPRPGDKTARTLAKKLLVCAPSNAAVDELVMRFKEGVKTLQGRAQKISVLRLGRSDAIN 1405

Query: 109  PNKSDMSKARHLLITILE 126
             N  D++    +   + E
Sbjct: 1406 TNVLDVTLDERVNAKLSE 1423


>gi|228908557|ref|ZP_04072397.1| UvrD/Rep helicase [Bacillus thuringiensis IBL 200]
 gi|228851110|gb|EEM95924.1| UvrD/Rep helicase [Bacillus thuringiensis IBL 200]
          Length = 347

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|300362961|ref|ZP_07059131.1| ATP-dependent DNA helicase [Lactobacillus gasseri JV-V03]
 gi|300353011|gb|EFJ68889.1| ATP-dependent DNA helicase [Lactobacillus gasseri JV-V03]
          Length = 764

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2   IYHNSFQEHS--ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  N   E S  +   +++  + EQ      T +   +V   AGSGKT  ++QRV  LL
Sbjct: 190 MLLNVLNEKSSTQMKSIVTTIQREQNKIIRNTSADLLFVQGAAGSGKTSAIMQRVAYLL 248


>gi|217977939|ref|YP_002362086.1| Adenosylcobinamide kinase [Methylocella silvestris BL2]
 gi|217503315|gb|ACK50724.1| Adenosylcobinamide kinase [Methylocella silvestris BL2]
          Length = 184

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA--AEMSHRVLEIIT 87
           PTRS  V   A SGK      R  + L  ++    ++  T   A A  AEM  R+     
Sbjct: 7   PTRSLLVLGGARSGK-----SRYAQKLAESSGARPVIIAT---AEAHDAEMRARIARHAA 58

Query: 88  AWS---HLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
                  L +E ++     ++  +P +  +     L ++ L
Sbjct: 59  ERGPGWTLVEEPIALVAALLREARPGRIVLIDCATLWLSNL 99


>gi|145344020|ref|XP_001416537.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576763|gb|ABO94830.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1658

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 20  TKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75
           T  ++ + S   R      V A AGSGKT  LV+       A  +PS   L L   +A  
Sbjct: 402 THEQEAIVSTSLRPPQWMVVHAFAGSGKTTTLVE------YAKRNPSKRFLYLAFNRAIT 455

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            E   +      A +        A   K  GKK +  D  ++  +
Sbjct: 456 EEAKTKFPANTDAKTFHGLAYGLATWYKAGGKKLHFGDKLRSSEV 500


>gi|269219549|ref|ZP_06163403.1| putative DNA or RNA helicase, Superfamily I [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269210791|gb|EEZ77131.1| putative DNA or RNA helicase, Superfamily I [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 747

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           ++   +     +  D+++  ++EQ     +D      V    G+GKT + + R   LL
Sbjct: 166 LMAAMATARDGKMSDIVATIQAEQDRIIRADSNGILVVQGGPGTGKTAVALHRAAYLL 223


>gi|240948613|ref|ZP_04752986.1| ATP-dependent RNA helicase HrpA [Actinobacillus minor NM305]
 gi|240297121|gb|EER47692.1| ATP-dependent RNA helicase HrpA [Actinobacillus minor NM305]
          Length = 1304

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPST 64
           E  DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  
Sbjct: 79  EYPDLPVSARREEILKLIAEHQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRR 138

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           +   +     A E+   +   I      +D+I    + K+       +++   R+L
Sbjct: 139 IAARSVATRIAEELKSELGSTIGYKVRFNDQISDNTLVKLMTDGILLAEIQNDRYL 194


>gi|229095646|ref|ZP_04226627.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
 gi|228687778|gb|EEL41675.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229101745|ref|ZP_04232462.1| UvrD/REP helicase [Bacillus cereus Rock3-28]
 gi|228681693|gb|EEL35853.1| UvrD/REP helicase [Bacillus cereus Rock3-28]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|289580739|ref|YP_003479205.1| helicase [Natrialba magadii ATCC 43099]
 gi|289530292|gb|ADD04643.1| helicase [Natrialba magadii ATCC 43099]
          Length = 986

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 14  IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           ID           A      A +    G+GKT+ + + +  ++        +L    T  
Sbjct: 605 IDNNEAQDEAVRKAVGAEDCALIHGPPGTGKTYTIARAIRAMVERG---ERVLLSAFTNR 661

Query: 74  A 74
           A
Sbjct: 662 A 662


>gi|254491430|ref|ZP_05104609.1| Type III restriction enzyme, res subunit family [Methylophaga
           thiooxidans DMS010]
 gi|224462908|gb|EEF79178.1| Type III restriction enzyme, res subunit family [Methylophaga
           thiooxydans DMS010]
          Length = 1026

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 40/215 (18%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHIL---VQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78
           +Q       ++  +  +AGSGKT+ +     ++  L   +  P    + +          
Sbjct: 299 KQTALDSAGQNYLIQHSAGSGKTNTISWTAHQLASLHGDDNKPVFNTVVV---------- 348

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
              + +       L D I   E  +   +K ++    K+   L   L     + + T   
Sbjct: 349 ---ISDRRNLDKQLQDSIYQIEHKQGVVEKIDE---DKSSTDLADALNAGAKIVITT--- 399

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-------KKSTLASIMLDNNEELKKA 191
                +Q+F         F+   + +   +I+EA         S+L  ++  +++E   A
Sbjct: 400 -----LQKFSFLMGKVEDFS---DRRFAVIIDEAHSSQGGRSASSLRVVLGKHDDEQVLA 451

Query: 192 FYEILEISNDED--IETLISDIISNRTALKLIFFF 224
             E+ +    E    E L+ + I  +     + F+
Sbjct: 452 AAEVEDDKQPEQKTTEDLVLEEIKKKGKQPNLSFY 486


>gi|218668066|ref|YP_002426056.1| P-type conjugative transfer protein TrbB [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218520279|gb|ACK80865.1| P-type conjugative transfer protein TrbB [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 322

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 29/186 (15%)

Query: 27  ASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           A    ++  VS   GSGKT +   L+ R+ +L         ++ +  T+    E+     
Sbjct: 149 AVLSRKNILVSGGTGSGKTTLANALIDRISKLSDIGT---RIVIIEDTR----ELQCTAP 201

Query: 84  EIITAWSHLSDEILSAEITKIQGK-KPNK----SDMSKARHLLITILETPGGLKVQTIHA 138
            +I   +     I    + K+  + +P++        KA   L+    T     + T+HA
Sbjct: 202 NVIQFLTDDDAGIDMTRLLKLTLRYRPDRILVGEVRDKAALALLKAWNTGHPGGIATLHA 261

Query: 139 FC--EAIMQ--QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
                A+++  Q   EA + +          + LI EA    L  I  D N    +    
Sbjct: 262 NNPEAALLRLDQLCQEAGVPA---------QQTLIHEAVDIVL-QIARDPNHPAGRRISA 311

Query: 195 ILEISN 200
           IL + +
Sbjct: 312 ILNVKD 317


>gi|104783960|ref|YP_610458.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
          entomophila L48]
          Length = 634

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 12/83 (14%)

Query: 6  SFQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
          +     E       T  +Q    A    R   V+A  G+GKT      +L  L    HP 
Sbjct: 11 ALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPGGHPD 70

Query: 64 ----------TLLCLTHTKAAAA 76
                     +L LT T+  AA
Sbjct: 71 KSQRHGPRQPRVLVLTPTRELAA 93


>gi|331090921|ref|ZP_08339764.1| hypothetical protein HMPREF9477_00407 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405475|gb|EGG85008.1| hypothetical protein HMPREF9477_00407 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 674

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           K +  +  +      V    AGSGKT + + R+  LL
Sbjct: 203 KEQNEIIRNTRDKILVIQGVAGSGKTSVALHRIAYLL 239


>gi|328882766|emb|CCA56005.1| putative helicase protein [Streptomyces venezuelae ATCC 10712]
          Length = 779

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 8   QEHSETI-DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           Q  S T+ D++S  ++EQ L+   P  S  +V    G+GKT + + R   LL
Sbjct: 208 QARSHTMRDIVSSIQAEQDLVIRAPAASVTYVEGGPGTGKTAVALHRAAYLL 259


>gi|282898629|ref|ZP_06306617.1| UvrD/REP helicase [Cylindrospermopsis raciborskii CS-505]
 gi|281196497|gb|EFA71406.1| UvrD/REP helicase [Cylindrospermopsis raciborskii CS-505]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 39/161 (24%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMS 79
           +  +A        VSA  G+GK+  +       +    +    S L+ +T TK+AA  + 
Sbjct: 30  QVQMADWLGGPLAVSAVPGAGKSTGMASAAAIAIARQYYSHSRSQLVLVTFTKSAAMNLK 89

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139
            ++ E +   S                                       G  V T+H  
Sbjct: 90  LKICEKLRELSLPQK-----------------------------------GFVVYTLHGL 114

Query: 140 CEAIMQQFPLEANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179
              I  ++P  + +      +    +S +LI  A +  ++ 
Sbjct: 115 ALNIATRYPQLSGLELDQVKLITPNRSHRLISIAVEQWISK 155


>gi|256848286|ref|ZP_05553729.1| DNA helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714884|gb|EEU29862.1| DNA helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 767

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2   IYHNSFQEHS--ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  ++   HS  +   ++S  +  Q      T+    +V   AGSGKT  ++QRV  LL
Sbjct: 189 MLLSALSNHSSTKMKSIVSTIQKAQNAIIRNTKDDLLFVQGAAGSGKTAAVLQRVAWLL 247


>gi|189189422|ref|XP_001931050.1| DNA replication helicase Dna2 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187972656|gb|EDU40155.1| DNA replication helicase Dna2 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1298

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 12/129 (9%)

Query: 21   KSEQLLASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
             S+Q  A     SA     V    G+GKT  +   +  L+       ++L  ++T  A  
Sbjct: 1012 NSDQRAAVSKVMSAKDYALVLGMPGTGKTTTIAHIIRTLVAKG---KSVLLTSYTHTAVD 1068

Query: 77   EMSHRVLEI---ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
             +  ++ +    I     +             G +P  S     R  +   +     L +
Sbjct: 1069 NILLKIRDDKIGILRLGTVKKIHPEVREFATLGVEPKDSVEELERSWMEPPVVATTCLTI 1128

Query: 134  QTIHAFCEA 142
               H+    
Sbjct: 1129 N--HSLFNR 1135


>gi|194467614|ref|ZP_03073601.1| DNA helicase [Lactobacillus reuteri 100-23]
 gi|194454650|gb|EDX43547.1| DNA helicase [Lactobacillus reuteri 100-23]
          Length = 772

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ      TRS    V   AGSGKT  ++QR+  LL
Sbjct: 199 QNDQYMHNIVATIQKEQNDIIRDTRSDLLLVQGVAGSGKTSAILQRIAYLL 249


>gi|83943862|ref|ZP_00956319.1| helicase, ATP-dependent, putative [Sulfitobacter sp. EE-36]
 gi|83845109|gb|EAP82989.1| helicase, ATP-dependent, putative [Sulfitobacter sp. EE-36]
          Length = 511

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 23/116 (19%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP------------STLLCLTHTKAAAAEMSHR------ 81
           AGSGKT +L +    L  A                 TL  L  T  AA+ +  R      
Sbjct: 52  AGSGKTLLLAELYKALENAGVDIVSGDYERKKKDKRTLAILAPTNKAASVLRLRGVPATT 111

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKP-----NKSDMSKARHLLITILETPGGLK 132
           +  I+    +  +    AE     G++P     N+  + +A          PG L 
Sbjct: 112 IHRILYTPVYDPEYERIAEWLAGSGERPVIEGMNEVSLDRAFAFYENNKSIPGALA 167


>gi|330506487|ref|YP_004382915.1| hypothetical protein MCON_0197 [Methanosaeta concilii GP-6]
 gi|328927295|gb|AEB67097.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 232

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 34 AWVSAN-AGSGKTHILVQRVLRLLLANAHP 62
            V A   GSGKT +L+  V  L+ A A P
Sbjct: 3  MVVVAGTPGSGKTSVLMHAVKDLIKAGAAP 32


>gi|322498882|emb|CBZ33955.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 786

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 17  ISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQ 50
           ++ T  +Q          + +VS  AG+GKT  L+ 
Sbjct: 248 LNWTSEQQRAVQLVRAGHNVFVSGAAGTGKTEWLLH 283


>gi|281363529|ref|NP_611185.3| CG6967, isoform C [Drosophila melanogaster]
 gi|281363531|ref|NP_725650.3| CG6967, isoform D [Drosophila melanogaster]
 gi|272432517|gb|AAF57908.3| CG6967, isoform C [Drosophila melanogaster]
 gi|272432518|gb|AAM68495.3| CG6967, isoform D [Drosophila melanogaster]
          Length = 764

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 19  QTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           Q ++ Q + + P+      +    G+GKT  +V+ +L+L L     S +L    + +A  
Sbjct: 254 QLEAVQRIVAGPSTQGPYILFGPPGTGKTTTIVEAILQLRLQQPQ-SRILVTAGSNSACD 312

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITK 103
            ++ ++ E I +   L +     ++ +
Sbjct: 313 TIALKLCEYIESNIRLQEHFAQQKLPE 339


>gi|257888901|ref|ZP_05668554.1| ATP-dependent DNA helicase [Enterococcus faecium 1,141,733]
 gi|257824957|gb|EEV51887.1| ATP-dependent DNA helicase [Enterococcus faecium 1,141,733]
          Length = 713

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 201 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 250


>gi|227551021|ref|ZP_03981070.1| superfamily I DNA/RNA helicase [Enterococcus faecium TX1330]
 gi|293379650|ref|ZP_06625786.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
 gi|227179856|gb|EEI60828.1| superfamily I DNA/RNA helicase [Enterococcus faecium TX1330]
 gi|292641648|gb|EFF59822.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
          Length = 711

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 199 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 248


>gi|164691047|dbj|BAF98706.1| unnamed protein product [Homo sapiens]
          Length = 1353

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79
           T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  ++ 
Sbjct: 805 TQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPEQRALIVTHSNQALNQLF 863

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
            +++ +     HL       E  + +        ++      I +LE    L+
Sbjct: 864 EKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916


>gi|163839865|ref|YP_001624270.1| conjugal transfer protein [Renibacterium salmoninarum ATCC 33209]
 gi|162953341|gb|ABY22856.1| conjugal transfer protein [Renibacterium salmoninarum ATCC 33209]
          Length = 214

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           ++  +     E +D  +  K      +   R   V   AGSGKT +L             
Sbjct: 68  VHTGAAFVPPEGLD--AGQKQACAAITGAARLVVVEGAAGSGKTTVLA---AAKTGLEVK 122

Query: 62  PSTLLCLTHTKAAAAE 77
             +++ +  T  AA E
Sbjct: 123 GRSMVVVAPTLKAAQE 138


>gi|332036319|gb|EGI72790.1| DNA helicase IV [Pseudoalteromonas haloplanktis ANT/505]
          Length = 730

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 60  AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-------LSDEILSAEITKIQGKKPNKS 112
           A P  +L L++ K AA E+  R ++  T  +        L+   L  ++ +   K    S
Sbjct: 14  AKPEQILVLSYNKTAANELKERFIKRATHANLHTKVPTILTFHALGLKLLQSAKKPIELS 73

Query: 113 DMSKARHLLITILETPGGLKVQT----IHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
             +     L + L      K+QT    + AF   ++ + P++      F+  D  Q ++ 
Sbjct: 74  KFATDPVQLNSWLTGWVSKKIQTEPQFLKAF-VDLLHE-PIDI-----FSFKDNAQYERY 126

Query: 169 IEEAKKSTLASIMLDNNEEL 188
           + + +  +LA   + + +E+
Sbjct: 127 VRDNEYRSLAGHKVKSYQEV 146


>gi|314918022|gb|EFS81853.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1]
          Length = 916

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +      +  + +D   +  V    G+G+T + ++   R +      S +L L  T+ +A
Sbjct: 1   MHGWDGLQTRVLADDAGTVLVMGGPGTGRTSVCLEIAARHVAFGGRLSEVLVLAQTRPSA 60

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLI 122
             +   ++  +         +    + +     P+K  ++      + R LL 
Sbjct: 61  QALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFRMRELLA 113


>gi|296200674|ref|XP_002747680.1| PREDICTED: NFX1-type zinc finger-containing protein 1 [Callithrix
           jacchus]
          Length = 1918

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHI--------LVQRVLRLLLANAHPSTLLCL 68
           +  ++ E L  +     A +    G+GKT++        L    +  + +   P  +L +
Sbjct: 598 LDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISSQKFP--ILVV 655

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
            +T  A  +    +               ++EI K    +  ++     R+L + +    
Sbjct: 656 CYTNHALDQFLEGIYRCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRRAY 715

Query: 129 GGLKVQT 135
             + + T
Sbjct: 716 --MSIMT 720


>gi|293572251|ref|ZP_06683250.1| conserved hypothetical protein [Enterococcus faecium E980]
 gi|291607710|gb|EFF37033.1| conserved hypothetical protein [Enterococcus faecium E980]
          Length = 711

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           E +E   + +  +SEQ        +++  V+  AGSGKT  ++QR+  LL
Sbjct: 199 ETNEMKAITATIQSEQNTIIRDVKSQNILVNGVAGSGKTSAIMQRIAYLL 248


>gi|228913727|ref|ZP_04077353.1| UvrD/REP helicase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228845919|gb|EEM90944.1| UvrD/REP helicase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|228964108|ref|ZP_04125233.1| UvrD/REP helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228795595|gb|EEM43077.1| UvrD/REP helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|183983576|ref|YP_001851867.1| helicase [Mycobacterium marinum M]
 gi|183176902|gb|ACC42012.1| helicase [Mycobacterium marinum M]
          Length = 344

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
          P+ +  + A AG+ KT    +RV+   LA+      L +T+T     E+  R+   
Sbjct: 2  PSNNRVIIAAAGARKT----ERVVDYALAD-PAKRTLIVTYTNENQREIIARIERK 52


>gi|145514213|ref|XP_001443017.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410378|emb|CAK75620.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1954

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 29/171 (16%)

Query: 34  AWVSANAGSGKTH--ILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
           A +    G+GKT+   L  R+L   L  N  P  +L + +T  A       + + +    
Sbjct: 523 ALIQGPPGTGKTYCGALAVRLLYQNLQKNDFP--ILIVCYTNHA-------LDQFLEHIL 573

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFP 148
               +   A +         +    + R  +         LK  +         I+Q+  
Sbjct: 574 KFVPKEHVARLGGASKNPILQECQIRCRQKVDFEFREFNKLKKEIS-------DIIQRM- 625

Query: 149 LEANITSHFAIADEEQSK---KLIEEAKKSTLASIMLDNNEELKKAFYEIL 196
               +   + I  ++ SK   +L +    + L+   L+ ++ L +   E L
Sbjct: 626 ----LNYDYKIKPQDISKYWRELYDSIYSNFLSDNELNEDDFLIEDSEETL 672


>gi|49480066|ref|YP_035300.1| ATP-dependent DNA helicase replicase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49331622|gb|AAT62268.1| ATP-dependent DNA helicase replicase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|311069866|ref|YP_003974789.1| DNA 3'-5' helicase IV [Bacillus atrophaeus 1942]
 gi|310870383|gb|ADP33858.1| DNA 3'-5' helicase IV [Bacillus atrophaeus 1942]
          Length = 773

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++ ++ ++   V   AGSGKT   +QRV  LL
Sbjct: 214 QKEQNQIIRNEISKYLIVQGAAGSGKTSAALQRVAYLL 251


>gi|257865901|ref|ZP_05645554.1| DNA/RNA helicase superfamily I [Enterococcus casseliflavus EC30]
 gi|257799835|gb|EEV28887.1| DNA/RNA helicase superfamily I [Enterococcus casseliflavus EC30]
          Length = 745

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q    Q++     +   +   AGSGKT  L+QRV  LL  N
Sbjct: 206 QKAQNQIIRDTTNKFLLIEGIAGSGKTSALLQRVAFLLYRN 246


>gi|228919874|ref|ZP_04083230.1| UvrD/REP helicase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228839775|gb|EEM85060.1| UvrD/REP helicase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|303286453|ref|XP_003062516.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456033|gb|EEH53335.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 648

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE--IITAWSH 91
           A +    G+GKT ++V+ V R +   A    +LC   +  A   +  R+     +   + 
Sbjct: 213 ALIHGPPGTGKTTVVVEYVAREVARGA---RILCCAASNVAVDNLVERLARITRLGHPAR 269

Query: 92  LSDEILSAEITKIQGKKPNKS---DMSKARHLLITILETPGGLK 132
           L   +L   +     +  N S   D  +    L   L      K
Sbjct: 270 LLASVLENSLEAQVLRSDNSSLARDCERESAALRRRLLKLADAK 313


>gi|225026319|ref|ZP_03715511.1| hypothetical protein EUBHAL_00560 [Eubacterium hallii DSM 3353]
 gi|224956329|gb|EEG37538.1| hypothetical protein EUBHAL_00560 [Eubacterium hallii DSM 3353]
          Length = 614

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHT-----KA 73
           +L+   P +S  +   AG GKT + V+ +   L     P       +  LT T       
Sbjct: 360 ELILISPKKSPLLIGEAGVGKTSV-VEGLAYRLQRGTVPDLLKNKKIFKLTTTSLLSGTK 418

Query: 74  AAAEMSHRVLEIITAWSHLSDEILS-AEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
              EM  R+ ++        D IL   EI  I G    +S  +   ++L   ++  G +K
Sbjct: 419 YVGEMEDRIKKLAGELEAHPDVILFIDEIHTIVGAGSTESSNNDISNMLKPYIDR-GDIK 477

Query: 133 V 133
           +
Sbjct: 478 I 478


>gi|163840498|ref|YP_001624903.1| DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953974|gb|ABY23489.1| DNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 1385

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 17  ISQTKSEQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           I     EQ LA D  R   S  +SA  G+G+T   +  +  L         +L L     
Sbjct: 337 ILDADQEQQLALDAIRAGESLVISAPPGTGQTQTALNAIAALAFDG---KNVLVL----- 388

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
              E    + E+   ++ LS + +  ++++    +  KS + +A    I   E     ++
Sbjct: 389 --GERRSTLNELAQRFAALSLDSVVLQLSEHSSPQQLKSQLVRA----IVRNEKAAEPRL 442

Query: 134 QTIHA 138
            T+H+
Sbjct: 443 GTLHS 447


>gi|163734135|ref|ZP_02141576.1| hypothetical protein RLO149_04314 [Roseobacter litoralis Och 149]
 gi|161392671|gb|EDQ16999.1| hypothetical protein RLO149_04314 [Roseobacter litoralis Och 149]
          Length = 511

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 44/186 (23%)

Query: 22  SEQLLASDPTRSAWVSA---NAGSGKTHILVQRVLRLLLANAHP-------------STL 65
            +QLL    +  A V A    AGSGKT +L +    +  A                  TL
Sbjct: 31  EDQLLMPPRSSKAAVMAIIGKAGSGKTLLLAELYKAIQDAGVDVVSGDYEPRKKRDRRTL 90

Query: 66  LCLTHTKAAAAEMSHR------VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDM 114
             L  T  AA+ +  R      +  I+    +  +    AE     G KP      +  +
Sbjct: 91  AILAPTNKAASVLRLRGVPATTIHRILYTPVYDPEYERIAEWLAGTGDKPETEALSEEAL 150

Query: 115 SKARHLLITILETPGGLKVQTIHAFCEAI----------MQQFPLEANITSHFAIADEEQ 164
           S+A          PG L           +           ++ PL+       ++ D++Q
Sbjct: 151 SRAETFYAKNKSIPGALA-------AAGLRGSDFITGWKRREEPLDIGFVDESSMLDDKQ 203

Query: 165 SKKLIE 170
            + L E
Sbjct: 204 FEDLRE 209


>gi|21429090|gb|AAM50264.1| LD34829p [Drosophila melanogaster]
          Length = 825

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 19  QTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           Q ++ Q + + P+      +    G+GKT  +V+ +L+L L     S +L    + +A  
Sbjct: 315 QLEAVQRIVAGPSTQGPYILFGPPGTGKTTTIVEAILQLRLQQPQ-SRILVTAGSNSACD 373

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITK 103
            ++ ++ E I +   L +     ++ +
Sbjct: 374 TIALKLCEYIESNIRLQEHFAQQKLPE 400


>gi|325262339|ref|ZP_08129076.1| putative ATP-dependent DNA helicase replicase [Clostridium sp. D5]
 gi|324032171|gb|EGB93449.1| putative ATP-dependent DNA helicase replicase [Clostridium sp. D5]
          Length = 697

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           + H S ++    I  I Q +  Q++ ++ + +  +   AGSGKT I + R+  LL
Sbjct: 203 LSHTSDEKMKSIISTI-QKEQNQIIRNEKSGTLIIQGAAGSGKTSIALHRIAFLL 256


>gi|315604804|ref|ZP_07879863.1| ATP-dependent helicase HrpB [Actinomyces sp. oral taxon 180 str.
          F0310]
 gi|315313475|gb|EFU61533.1| ATP-dependent helicase HrpB [Actinomyces sp. oral taxon 180 str.
          F0310]
          Length = 876

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLC 67
            A+ P   A V+A  G+GKT +L   V   L        PS +L 
Sbjct: 36 AQAARPGGCALVTAPPGTGKTTMLPVAVAVALAGRGGGQGPSRVLV 81


>gi|312113853|ref|YP_004011449.1| P-type conjugative transfer ATPase TrbB [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218982|gb|ADP70350.1| P-type conjugative transfer ATPase TrbB [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 321

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 21  KSEQLLASDPT---RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           + ++ L  +     ++  +    GSGKT  LV  V+ L+ A      LL +
Sbjct: 135 QRQRALIREAALGHQNILIVGGTGSGKT-TLVNAVIHLIGAELPGERLLII 184


>gi|225559206|gb|EEH07489.1| helicase [Ajellomyces capsulatus G186AR]
          Length = 732

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 12  ETIDL-ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           E ID  ++ ++ E +  A      A +    G+GKT+ L++ +L+ L  N     +L 
Sbjct: 229 EFIDPTLNDSQREAIRFALAAKEIALIHGPPGTGKTYTLIELILQFLRQNL---RILV 283


>gi|225449865|ref|XP_002265477.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1552

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V    G+GKT   VQ +L +L  N      L +TH+  A  ++  ++++         D
Sbjct: 892 MVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR--------D 942

Query: 95  EILSAEITKIQGKKPNKSDMSKARH 119
                 +   QG++   +D+  +R 
Sbjct: 943 VPARYLLRLGQGEQELATDLDFSRQ 967


>gi|146085968|ref|XP_001465407.1| DNA repair and recombination protein,mitochondrial precursor
           [Leishmania infantum JPCM5]
 gi|134069505|emb|CAM67828.1| putative DNA repair and recombination protein,mitochondrial
           precursor [Leishmania infantum JPCM5]
          Length = 786

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 17  ISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQ 50
           ++ T  +Q          + +VS  AG+GKT  L+ 
Sbjct: 248 LNWTSEQQRAVQLVRAGHNVFVSGAAGTGKTEWLLH 283


>gi|83953503|ref|ZP_00962225.1| helicase, ATP-dependent, putative [Sulfitobacter sp. NAS-14.1]
 gi|83842471|gb|EAP81639.1| helicase, ATP-dependent, putative [Sulfitobacter sp. NAS-14.1]
          Length = 511

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 23/116 (19%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP------------STLLCLTHTKAAAAEMSHR------ 81
           AGSGKT +L +    L  A                 TL  L  T  AA+ +  R      
Sbjct: 52  AGSGKTLLLAELYKALENAGVDIVSGDYERKKKDKRTLAILAPTNKAASVLRLRGVPATT 111

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKP-----NKSDMSKARHLLITILETPGGLK 132
           +  I+    +  +    AE     G++P     N+  + +A          PG L 
Sbjct: 112 IHRILYTPVYDPEYERIAEWLAGSGERPVIEGMNEVSLDRAFAFYENNKSIPGALA 167


>gi|297662392|ref|XP_002809682.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Pongo
           abelii]
          Length = 413

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 31  TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89
            R    SA+ GSGKT   L+  ++R L  +  PS  L LT T+    E++ ++       
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSA-LILTPTR----ELAIQIERQAKEL 294

Query: 90  SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
                 +   +   + G  P    + + +  +  I+ TPG L
Sbjct: 295 MS---GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL 333


>gi|269956915|ref|YP_003326704.1| hypothetical protein Xcel_2128 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305596|gb|ACZ31146.1| conserved hypothetical protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 470

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 6/46 (13%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
                L   P     V    GSGKT      ++ LL+    P  ++
Sbjct: 175 NELARLGEAPRSFVIV----GSGKTA--TDGIVWLLINGVPPDRIM 214


>gi|189241497|ref|XP_967205.2| PREDICTED: similar to neuron navigator 2 [Tribolium castaneum]
          Length = 1801

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 9/120 (7%)

Query: 22   SEQLLASDPTRSAWVSANA-GSGKTHILVQRVL--RLLLANAHPSTLLCLTHT--KAAAA 76
            +++L++        V   A G+GKTH L  R+           P+  +  T      +A 
Sbjct: 1473 AQRLVSLLSEHRRLVLCGAPGTGKTH-LATRLAEFHAQAQGRDPAEAVA-TFNVDNKSAK 1530

Query: 77   EMSHRVLEIITAWSHLSDEILS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
            E+   +  +    +   + +L     +  +    P    +      L  +L T       
Sbjct: 1531 ELRQYLSHLSEQAAAGDNSVLPCVVVLDNLHKAGPLADALGSLPRNLPCLLGTMAQSACS 1590


>gi|296392993|ref|YP_003657877.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296180140|gb|ADG97046.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 1025

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL-LCLTHTKAAAAEMSHRV 82
           Q LAS       V    GSGKT ++V            P T+ + LT  +AAA  +  ++
Sbjct: 18  QDLASGRRGPFMVRGGPGSGKTRLVVDLACHW---APQPGTVTVVLTSNRAAADRLRAQI 74

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
              +   S      L+  + +           ++AR 
Sbjct: 75  HGRLLRAS--PQLALAKPLVRTTHSYAFALLEARARA 109


>gi|228906784|ref|ZP_04070653.1| UvrD/REP helicase [Bacillus thuringiensis IBL 200]
 gi|228852788|gb|EEM97573.1| UvrD/REP helicase [Bacillus thuringiensis IBL 200]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|228926186|ref|ZP_04089261.1| UvrD/REP helicase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228833439|gb|EEM79001.1| UvrD/REP helicase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 202 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 250


>gi|228957420|ref|ZP_04119175.1| UvrD/REP helicase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228802253|gb|EEM49115.1| UvrD/REP helicase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229016341|ref|ZP_04173286.1| UvrD/REP helicase [Bacillus cereus AH1273]
 gi|229022582|ref|ZP_04179109.1| UvrD/REP helicase [Bacillus cereus AH1272]
 gi|228738709|gb|EEL89178.1| UvrD/REP helicase [Bacillus cereus AH1272]
 gi|228744933|gb|EEL94990.1| UvrD/REP helicase [Bacillus cereus AH1273]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229114598|ref|ZP_04244012.1| UvrD/REP helicase [Bacillus cereus Rock1-3]
 gi|228668663|gb|EEL24091.1| UvrD/REP helicase [Bacillus cereus Rock1-3]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229042890|ref|ZP_04190624.1| UvrD/REP helicase [Bacillus cereus AH676]
 gi|229143753|ref|ZP_04272174.1| UvrD/REP helicase [Bacillus cereus BDRD-ST24]
 gi|296501756|ref|YP_003663456.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis BMB171]
 gi|228639706|gb|EEK96115.1| UvrD/REP helicase [Bacillus cereus BDRD-ST24]
 gi|228726437|gb|EEL77660.1| UvrD/REP helicase [Bacillus cereus AH676]
 gi|296322808|gb|ADH05736.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis BMB171]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229195348|ref|ZP_04322119.1| UvrD/REP helicase [Bacillus cereus m1293]
 gi|228588122|gb|EEK46169.1| UvrD/REP helicase [Bacillus cereus m1293]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|196037388|ref|ZP_03104699.1| helicase, UvrD/Rep family [Bacillus cereus NVH0597-99]
 gi|196031630|gb|EDX70226.1| helicase, UvrD/Rep family [Bacillus cereus NVH0597-99]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|119181373|ref|XP_001241901.1| hypothetical protein CIMG_05797 [Coccidioides immitis RS]
          Length = 2066

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 40/138 (28%), Gaps = 17/138 (12%)

Query: 6    SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            S +    T DL          A D      +    GSGKT  +V  V  LL        +
Sbjct: 1211 SVKHILGTYDLNLAQAKAVKSAMDNDAFTLIQGPPGSGKTKTIVALVGALLTPTLSEHRI 1270

Query: 66   -----------------LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
                             L    + AA  E+  R  E +      + +I    + +     
Sbjct: 1271 APPRPGDKTARTLAKKLLVCAPSNAAVDELVMRFKEGVKTLQGRAQKISVLRLGRSDAIN 1330

Query: 109  PNKSDMSKARHLLITILE 126
             N  D++    +   + E
Sbjct: 1331 TNVLDVTLDERVNAKLSE 1348


>gi|30019196|ref|NP_830827.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579]
 gi|229126452|ref|ZP_04255467.1| UvrD/REP helicase [Bacillus cereus BDRD-Cer4]
 gi|29894739|gb|AAP08028.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579]
 gi|228657032|gb|EEL12855.1| UvrD/REP helicase [Bacillus cereus BDRD-Cer4]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|26989869|ref|NP_745294.1| hypothetical protein PP_3150 [Pseudomonas putida KT2440]
 gi|24984776|gb|AAN68758.1|AE016507_9 hypothetical protein PP_3150 [Pseudomonas putida KT2440]
          Length = 665

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           +Y  S        D  ++   E L   D   S  V   AG+GKT  L+ +  RLL     
Sbjct: 167 VYLPSLASDLMLSDQQNRLLREFLSGID--ESVAVQGFAGTGKTF-LIHQFARLL----E 219

Query: 62  PSTLLCLTHTKAAAAEMSHRVLEIIT----AWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
           P   L L  T+     +  RV +        +  L+DE+L+ ++T    +  +      +
Sbjct: 220 PQRTLLLALTEGQLRALQARVKDAAAYTALTFGQLADELLNRDLTSNGWRLRDPYRTKLS 279

Query: 118 -RHLLITILETPGGLKVQTI---H--AFCEAIMQQFPLEAN 152
            R     ++       +  +      A C   ++ F   A+
Sbjct: 280 WRPQEAQVVRWLSIPDIGPLAARDVVALCIRAVRTFCHSAD 320


>gi|326792246|ref|YP_004310067.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326543010|gb|ADZ84869.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 761

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
           Q +  Q++ S+      V   AGSGKT I + R+  L+    +P 
Sbjct: 204 QQEQNQIIRSESFLPLVVQGVAGSGKTTIALHRMAYLIYNQQNPK 248


>gi|257457848|ref|ZP_05623007.1| cysteinyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257444561|gb|EEV19645.1| cysteinyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 487

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 21/178 (11%)

Query: 68  LTHT-------KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
           LT +       K A   +  R+  ++     L D        +   +        KAR  
Sbjct: 316 LTFSWEAMETAKNARKNLEQRIANLLAEAKTLPDFPSGNVTAEQAEQLL---HTEKARCY 372

Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH-----FAIADEEQSKKLIEEAKKS 175
           L   ++      + T  A   +++QQ   +  + +        I D   + +LIEEA+  
Sbjct: 373 LADFVQALEE-DISTPRA--LSVLQQAVKDKELEAAEAITLIRIFDAVLALRLIEEAEAL 429

Query: 176 TLASIMLDNNEELKKAFYEILEISNDEDIETL--ISDIISNRTALKLIFFFFSYLWRR 231
                 +DN EE+++   E  E   ++D +    I +I+ NR  + L       LWR+
Sbjct: 430 HTGGESVDNAEEIERLVAERTEAKKNKDFKRADEIRNILKNR-GIALEDTATGTLWRK 486


>gi|229028824|ref|ZP_04184925.1| UvrD/REP helicase [Bacillus cereus AH1271]
 gi|228732395|gb|EEL83276.1| UvrD/REP helicase [Bacillus cereus AH1271]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229068701|ref|ZP_04201999.1| UvrD/REP helicase [Bacillus cereus F65185]
 gi|228714448|gb|EEL66325.1| UvrD/REP helicase [Bacillus cereus F65185]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229090091|ref|ZP_04221341.1| UvrD/REP helicase [Bacillus cereus Rock3-42]
 gi|228693168|gb|EEL46879.1| UvrD/REP helicase [Bacillus cereus Rock3-42]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229120659|ref|ZP_04249902.1| UvrD/REP helicase [Bacillus cereus 95/8201]
 gi|228662664|gb|EEL18261.1| UvrD/REP helicase [Bacillus cereus 95/8201]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229160111|ref|ZP_04288112.1| UvrD/REP helicase [Bacillus cereus R309803]
 gi|228623322|gb|EEK80147.1| UvrD/REP helicase [Bacillus cereus R309803]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229171801|ref|ZP_04299373.1| UvrD/REP helicase [Bacillus cereus MM3]
 gi|228611698|gb|EEK68948.1| UvrD/REP helicase [Bacillus cereus MM3]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|219871768|ref|YP_002476143.1| ATP-dependent RNA helicase HrpA [Haemophilus parasuis SH0165]
 gi|219691972|gb|ACL33195.1| ATP-dependent RNA helicase HrpA [Haemophilus parasuis SH0165]
          Length = 1312

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLA 58
           S Q + E  DL    + +++L         V A   GSGKT  L +  L L      L+ 
Sbjct: 73  SEQLNIEYPDLPVSARRDEILKLIAEHQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIG 132

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
           +  P  +   +     A E+   +   I      +D++    + K+       +++   R
Sbjct: 133 HTQPRRIAARSVATRIAEELKSELGSTIGYKVRFNDQMSDNTLVKLMTDGILLAEIQNDR 192

Query: 119 HL 120
           +L
Sbjct: 193 YL 194


>gi|218192957|gb|EEC75384.1| hypothetical protein OsI_11850 [Oryza sativa Indica Group]
          Length = 1572

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V    G+GKT   VQ +L +L  N      L +TH+  A  ++  ++++      +L  
Sbjct: 892 MVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYL-- 948

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            +   +  +      + S   +   +L+  LE  G 
Sbjct: 949 -LRLGQGEQELATDLDFSRQGRVNAMLVRRLELLGE 983


>gi|108708523|gb|ABF96318.1| expressed protein [Oryza sativa Japonica Group]
          Length = 1581

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V    G+GKT   VQ +L +L  N      L +TH+  A  ++  ++++      +L  
Sbjct: 901 MVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYL-- 957

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            +   +  +      + S   +   +L+  LE  G 
Sbjct: 958 -LRLGQGEQELATDLDFSRQGRVNAMLVRRLELLGE 992


>gi|50582743|gb|AAT78813.1| putative aquarius [Oryza sativa Japonica Group]
 gi|222625033|gb|EEE59165.1| hypothetical protein OsJ_11087 [Oryza sativa Japonica Group]
          Length = 1572

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V    G+GKT   VQ +L +L  N      L +TH+  A  ++  ++++      +L  
Sbjct: 892 MVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYL-- 948

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            +   +  +      + S   +   +L+  LE  G 
Sbjct: 949 -LRLGQGEQELATDLDFSRQGRVNAMLVRRLELLGE 983


>gi|116630236|ref|YP_815408.1| superfamily I DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|282852862|ref|ZP_06262203.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|116095818|gb|ABJ60970.1| Superfamily I DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|282555970|gb|EFB61591.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
          Length = 764

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2   IYHNSFQEHS--ETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           +  N   E S  +   +++  + EQ      T +   +V   AGSGKT  ++QRV  LL
Sbjct: 190 MLLNVLNEKSSTQMKSIVTTIQREQNKIIRNTSADLLFVQGAAGSGKTSAIMQRVAYLL 248


>gi|324325141|gb|ADY20401.1| helicase, UvrD/Rep family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|301052686|ref|YP_003790897.1| ATP-dependent DNA helicase replicase [Bacillus anthracis CI]
 gi|300374855|gb|ADK03759.1| ATP-dependent DNA helicase replicase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|222094777|ref|YP_002528837.1| ATP-dependent DNA helicase replicase [Bacillus cereus Q1]
 gi|221238835|gb|ACM11545.1| ATP-dependent DNA helicase replicase [Bacillus cereus Q1]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|171058642|ref|YP_001790991.1| hypothetical protein Lcho_1959 [Leptothrix cholodnii SP-6]
 gi|170776087|gb|ACB34226.1| conserved hypothetical protein [Leptothrix cholodnii SP-6]
          Length = 343

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
           V A AGSGKT  L   +  L          L +T+T A    +  +V+E   
Sbjct: 5  VVFAVAGSGKTTSL---IAAL----DEVRRFLLVTYTDANHDNLRAKVIERFG 50


>gi|188584403|ref|YP_001927848.1| hypothetical protein Mpop_5219 [Methylobacterium populi BJ001]
 gi|179347901|gb|ACB83313.1| protein of unknown function DUF1009 [Methylobacterium populi BJ001]
          Length = 282

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 15/103 (14%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT-HTKAAAAEMSHR----- 81
            DPTR   + A AG      L + V   L     P  +L +   T+ A   M  R     
Sbjct: 2   VDPTRPLALVAGAG-----RLPELVAASLDRARRPFRVLAVRGFTERA---MRRRADAVV 53

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
            +L+I      L D   +A +      +P+ + +  A H +  
Sbjct: 54  DLLDIPGTLRILKDWAPAAVVPAGGVTRPSPAALLNAAHAVRN 96


>gi|157372284|ref|YP_001480273.1| hypothetical protein Spro_4050 [Serratia proteamaculans 568]
 gi|157324048|gb|ABV43145.1| conserved hypothetical protein [Serratia proteamaculans 568]
          Length = 481

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           T  +  +         V A AG+GKT  LV R     LAN   S +L L + +A
Sbjct: 5  DTPEQAAIIGWSGTKLVVRAFAGTGKTSTLV-RFA---LANPD-SRMLYLAYNRA 54


>gi|58261218|ref|XP_568019.1| DNA helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57230101|gb|AAW46502.1| DNA helicase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 952

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
            V    G+GKT ++V+  ++LL  +   P  +L   HT  A
Sbjct: 477 LVQGPPGTGKTRVIVE-TIKLLKHHFQIPHPILVCAHTNVA 516


>gi|134115759|ref|XP_773593.1| hypothetical protein CNBI2070 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256219|gb|EAL18946.1| hypothetical protein CNBI2070 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 952

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74
            V    G+GKT ++V+  ++LL  +   P  +L   HT  A
Sbjct: 477 LVQGPPGTGKTRVIVE-TIKLLKHHFQIPHPILVCAHTNVA 516


>gi|306815650|ref|ZP_07449799.1| hypothetical protein ECNC101_03578 [Escherichia coli NC101]
 gi|305851312|gb|EFM51767.1| hypothetical protein ECNC101_03578 [Escherichia coli NC101]
          Length = 505

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ 50
          ++ T  +  +     +   V+A AG+GKT  LVQ
Sbjct: 3  LTPTDEQSAIIHWQGQKLVVNAFAGTGKTSTLVQ 36


>gi|228944770|ref|ZP_04107133.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228814798|gb|EEM61056.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|218235222|ref|YP_002365808.1| helicase, UvrD/Rep family [Bacillus cereus B4264]
 gi|218163179|gb|ACK63171.1| helicase, UvrD/Rep family [Bacillus cereus B4264]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|149280199|ref|ZP_01886322.1| DEAD/DEAH box helicase [Pedobacter sp. BAL39]
 gi|149229036|gb|EDM34432.1| DEAD/DEAH box helicase [Pedobacter sp. BAL39]
          Length = 1006

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 41/218 (18%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHIL---VQRV--LRLLLANAHPSTLLCLTHTKAAAAE 77
           +  LA +   +  +  +AGSGK++ +     R+  L          +++ +T        
Sbjct: 292 QTSLADEVGTNYLIEHSAGSGKSNTIAWVAHRLSSLHKTDNTKLFDSVVVIT-------- 343

Query: 78  MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
              RV         + D  L   I + + KK     + K    L   LE    + + T+ 
Sbjct: 344 --DRV---------VLDRQLQDTIYQFEHKKGVVLKIDKDSKQLAEALENSVPIVITTLQ 392

Query: 138 AF---CEAIMQQFPLEANITS-------HFAIA-DEEQSKKLIEEAKKSTLASIMLDNNE 186
            F    E  +++   E    S       ++AI  DE  S +  E A    L  ++    E
Sbjct: 393 KFPFVTEQ-LRKLAEERGEDSKGLLKTRNYAILVDEAHSSQSGETAVD--LKEVL--GGE 447

Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFF 224
           +L +   E  +   +  +E L  ++ + R   K I FF
Sbjct: 448 KLAREAEERAKEDGENTLELLYRNM-AKRGKQKNISFF 484


>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 533

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPS---TLLCLTHTK---- 72
           + + + A+       VS++ GSGKT   L+  + RLL   A  S    +L LT T+    
Sbjct: 28  QQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQRLLAEPAVKSIGPRVLVLTPTRELAL 87

Query: 73  ---AAA----AEMSH 80
               AA     EM  
Sbjct: 88  QVEKAAMTYGKEMRR 102


>gi|331696958|ref|YP_004333197.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326951647|gb|AEA25344.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 798

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Q + ++++ S P+    V    G+GKT + + R   LL  +  
Sbjct: 215 QAEQDRIIRSKPSGVLVVQGGPGTGKTAVALHRAAYLLYTHRD 257


>gi|325002340|ref|ZP_08123452.1| DNA helicase [Pseudonocardia sp. P1]
          Length = 1561

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA- 76
           ++ +S+ +   D      V    G+GKTH +   V  LL        +L     + A A 
Sbjct: 351 NEEQSQIIHRLDADSGVVVEGPPGTGKTHTIANLVSALLAQG---KRVLVTA--EKAQAL 405

Query: 77  ---------EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
                    EM   +   +T  S   +  LS  +  + G+K + + +   R +
Sbjct: 406 RVLRDKLPPEMQE-LCVSLTDASAKGNSDLSRSVATLAGRKTDFNPVRADREI 457


>gi|307267225|ref|ZP_07548729.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917749|gb|EFN48019.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 671

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 15/106 (14%)

Query: 24  QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83
           Q LA  P     V    G+GK+H +   +  LL        +L         +E   R L
Sbjct: 385 QKLAVSPG--VVVQGPPGTGKSHTIANLICHLLAHG---KRVLV-------TSE-KERAL 431

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            ++     + +EI    ++ + G   +  ++  +   +   ++   
Sbjct: 432 RVLRD--KIPEEIRHLCVSVLGGDSASVKELENSIENITENIDIYD 475


>gi|294881038|ref|XP_002769213.1| splicing endonuclease positive effector sen1, putative [Perkinsus
            marinus ATCC 50983]
 gi|239872491|gb|EER01931.1| splicing endonuclease positive effector sen1, putative [Perkinsus
            marinus ATCC 50983]
          Length = 2247

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 17   ISQTKSEQLL-ASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHT 71
            +++ +S+ L  A D + R+  +    G+GKT ++V  +  LL        P  +L    +
Sbjct: 1582 LNEGQSKALAYACDASKRAVLLQGPPGTGKTRVVVAILQELLRRQTRRKFP--ILVSAPS 1639

Query: 72   KAAAAEMSHRVLEIITA 88
             AA  E++ R+L     
Sbjct: 1640 NAAVDEIAARLLNATGG 1656


>gi|228951512|ref|ZP_04113618.1| UvrD/REP helicase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228808219|gb|EEM54732.1| UvrD/REP helicase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229078349|ref|ZP_04210913.1| UvrD/REP helicase [Bacillus cereus Rock4-2]
 gi|228705024|gb|EEL57446.1| UvrD/REP helicase [Bacillus cereus Rock4-2]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229149353|ref|ZP_04277589.1| UvrD/REP helicase [Bacillus cereus m1550]
 gi|228633995|gb|EEK90588.1| UvrD/REP helicase [Bacillus cereus m1550]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229177574|ref|ZP_04304952.1| UvrD/REP helicase [Bacillus cereus 172560W]
 gi|228605936|gb|EEK63379.1| UvrD/REP helicase [Bacillus cereus 172560W]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|206976553|ref|ZP_03237459.1| helicase, UvrD/Rep family [Bacillus cereus H3081.97]
 gi|206745236|gb|EDZ56637.1| helicase, UvrD/Rep family [Bacillus cereus H3081.97]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|52144276|ref|YP_082552.1| ATP-dependent DNA helicase replicase [Bacillus cereus E33L]
 gi|51977745|gb|AAU19295.1| ATP-dependent DNA helicase replicase [Bacillus cereus E33L]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|254725569|ref|ZP_05187351.1| helicase, UvrD/Rep family protein [Bacillus anthracis str. A1055]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|240282138|gb|EER45641.1| insulin II gene enhancer-binding protein rip1 [Ajellomyces
           capsulatus H143]
          Length = 734

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 12  ETIDL-ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           E ID  ++ ++ E +  A      A +    G+GKT+ L++ +L+ L  N     +L 
Sbjct: 229 EFIDPTLNDSQREAIRFALAAKEIALIHGPPGTGKTYTLIELILQFLRQNL---RILV 283


>gi|228938270|ref|ZP_04100884.1| UvrD/REP helicase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971149|ref|ZP_04131781.1| UvrD/REP helicase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977757|ref|ZP_04138142.1| UvrD/REP helicase [Bacillus thuringiensis Bt407]
 gi|228781965|gb|EEM30158.1| UvrD/REP helicase [Bacillus thuringiensis Bt407]
 gi|228788575|gb|EEM36522.1| UvrD/REP helicase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821406|gb|EEM67417.1| UvrD/REP helicase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326938778|gb|AEA14674.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|228984227|ref|ZP_04144409.1| UvrD/REP helicase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228775514|gb|EEM23898.1| UvrD/REP helicase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229154722|ref|ZP_04282837.1| UvrD/REP helicase [Bacillus cereus ATCC 4342]
 gi|228628670|gb|EEK85382.1| UvrD/REP helicase [Bacillus cereus ATCC 4342]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|229189237|ref|ZP_04316261.1| UvrD/REP helicase [Bacillus cereus ATCC 10876]
 gi|228594281|gb|EEK52076.1| UvrD/REP helicase [Bacillus cereus ATCC 10876]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|189183903|ref|YP_001937688.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180674|dbj|BAG40454.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 886

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N+       I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 275 VYYNNIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 329

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 330 HKLATNRR-QKVIGLAPTHKAVSELRSK 356


>gi|196044297|ref|ZP_03111533.1| helicase, UvrD/Rep family [Bacillus cereus 03BB108]
 gi|229183350|ref|ZP_04310578.1| UvrD/REP helicase [Bacillus cereus BGSC 6E1]
 gi|196024936|gb|EDX63607.1| helicase, UvrD/Rep family [Bacillus cereus 03BB108]
 gi|228600134|gb|EEK57726.1| UvrD/REP helicase [Bacillus cereus BGSC 6E1]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|196036432|ref|ZP_03103828.1| helicase, UvrD/Rep family [Bacillus cereus W]
 gi|195990906|gb|EDX54878.1| helicase, UvrD/Rep family [Bacillus cereus W]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|206968092|ref|ZP_03229048.1| ATP-dependent DNA helicase replicase [Bacillus cereus AH1134]
 gi|206737012|gb|EDZ54159.1| ATP-dependent DNA helicase replicase [Bacillus cereus AH1134]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|217958628|ref|YP_002337176.1| helicase, UvrD/Rep family [Bacillus cereus AH187]
 gi|229137838|ref|ZP_04266437.1| UvrD/REP helicase [Bacillus cereus BDRD-ST26]
 gi|217067883|gb|ACJ82133.1| helicase, UvrD/Rep family [Bacillus cereus AH187]
 gi|228645495|gb|EEL01728.1| UvrD/REP helicase [Bacillus cereus BDRD-ST26]
          Length = 777

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|118476652|ref|YP_893803.1| ATP-dependent DNA helicase UvrD [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415877|gb|ABK84296.1| ATP-dependent DNA helicase UvrD [Bacillus thuringiensis str. Al
           Hakam]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|330465188|ref|YP_004402931.1| hypothetical protein VAB18032_06035 [Verrucosispora maris
           AB-18-032]
 gi|328808159|gb|AEB42331.1| hypothetical protein VAB18032_06035 [Verrucosispora maris
           AB-18-032]
          Length = 800

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  L+ +D  +S  V    G+GKT + + R   LL
Sbjct: 260 DIVATIQPEQDELVRADLAQSICVQGAPGTGKTAVGLHRAAYLL 303


>gi|268316051|ref|YP_003289770.1| CRISPR-associated helicase Cas3 [Rhodothermus marinus DSM 4252]
 gi|262333585|gb|ACY47382.1| CRISPR-associated helicase Cas3 [Rhodothermus marinus DSM 4252]
          Length = 868

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 16/112 (14%)

Query: 41  GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS------- 93
           GSGKT   V R LRL            L  T++AA+++  R+ EI+      +       
Sbjct: 304 GSGKTEAAVARFLRLYQEGLVDGMYFALP-TRSAASQIHRRITEIVARVFPEAHRPPVVL 362

Query: 94  --------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137
                   DE  +  +   +    +++   +            G + V TI 
Sbjct: 363 AVPGYLRVDEAEAVRLPDFRVLWDDEALRYRGWAAEHPKRYLAGPIVVGTID 414


>gi|256838546|ref|ZP_05544056.1| ATP-dependent DNA helicase UvrD [Parabacteroides sp. D13]
 gi|256739465|gb|EEU52789.1| ATP-dependent DNA helicase UvrD [Parabacteroides sp. D13]
          Length = 553

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTK 72
          T  + +   +P +   V A  G+GKTH L+  +  ++  +        + C+T+T 
Sbjct: 6  TSEQTIPIDEPFK---VCAGPGAGKTHWLINHIKNVVSNSHKLDIVKKVACITYTN 58


>gi|225862988|ref|YP_002748366.1| helicase, UvrD/Rep family [Bacillus cereus 03BB102]
 gi|225790764|gb|ACO30981.1| helicase, UvrD/Rep family [Bacillus cereus 03BB102]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|282901242|ref|ZP_06309170.1| UvrD/REP helicase [Cylindrospermopsis raciborskii CS-505]
 gi|281193857|gb|EFA68826.1| UvrD/REP helicase [Cylindrospermopsis raciborskii CS-505]
          Length = 704

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTK 72
             +L+  D      V   AG+GKT + + R   L+    N     +L  T+T+
Sbjct: 251 QRKLVERDWNGPVRVLGGAGTGKTVVALHRAKWLVHHRFNMPGDRILFTTYTR 303


>gi|256419705|ref|YP_003120358.1| superfamily I DNA and RNA helicase [Chitinophaga pinensis DSM 2588]
 gi|256034613|gb|ACU58157.1| superfamily I DNA and RNA helicase [Chitinophaga pinensis DSM 2588]
          Length = 1111

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 19  QTKSEQ---LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
              ++Q     A D      +    G+GKT  L+  ++ +L      +  + +  T  A 
Sbjct: 691 FNNNQQDILQAALDAEDYYLIQGPPGTGKTSALLTALVGVLAETE--TQTIVVAFTNRAV 748

Query: 76  AEM 78
            E+
Sbjct: 749 EEI 751


>gi|239630461|ref|ZP_04673492.1| DNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526744|gb|EEQ65745.1| DNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 395

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ  +  D T    V    AGSGKT  ++QR+  LL
Sbjct: 196 QSDEYMKNIVATIQREQNDIIRDTTSDLLVVQGVAGSGKTSAVLQRIAYLL 246


>gi|30261163|ref|NP_843540.1| UvrD/Rep family helicase [Bacillus anthracis str. Ames]
 gi|47526318|ref|YP_017667.1| UvrD/Rep family helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183994|ref|YP_027246.1| UvrD/Rep family helicase [Bacillus anthracis str. Sterne]
 gi|165871839|ref|ZP_02216482.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0488]
 gi|167640174|ref|ZP_02398440.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0193]
 gi|170688102|ref|ZP_02879314.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0465]
 gi|170707676|ref|ZP_02898128.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0389]
 gi|177654160|ref|ZP_02936133.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0174]
 gi|190566742|ref|ZP_03019659.1| helicase, UvrD/Rep family [Bacillus anthracis Tsiankovskii-I]
 gi|227816106|ref|YP_002816115.1| helicase, UvrD/Rep family [Bacillus anthracis str. CDC 684]
 gi|229602378|ref|YP_002865592.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0248]
 gi|254682781|ref|ZP_05146642.1| helicase, UvrD/Rep family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254734196|ref|ZP_05191909.1| helicase, UvrD/Rep family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254753499|ref|ZP_05205535.1| helicase, UvrD/Rep family protein [Bacillus anthracis str. Vollum]
 gi|254758596|ref|ZP_05210623.1| helicase, UvrD/Rep family protein [Bacillus anthracis str.
           Australia 94]
 gi|30254777|gb|AAP25026.1| helicase, UvrD/Rep family [Bacillus anthracis str. Ames]
 gi|47501466|gb|AAT30142.1| helicase, UvrD/Rep family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177921|gb|AAT53297.1| helicase, UvrD/Rep family [Bacillus anthracis str. Sterne]
 gi|164712416|gb|EDR17950.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0488]
 gi|167511775|gb|EDR87155.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0193]
 gi|170127451|gb|EDS96326.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0389]
 gi|170667997|gb|EDT18748.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0465]
 gi|172080867|gb|EDT65947.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0174]
 gi|190562294|gb|EDV16262.1| helicase, UvrD/Rep family [Bacillus anthracis Tsiankovskii-I]
 gi|227007588|gb|ACP17331.1| helicase, UvrD/Rep family [Bacillus anthracis str. CDC 684]
 gi|229266786|gb|ACQ48423.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0248]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|261328192|emb|CBH11169.1| nonsense mRNA reducing factor 1, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 842

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ ++ + L  +       +    G+GKT   V  ++R L ++   S +L    +  A  
Sbjct: 372 LNYSQEQALRVALRNPLTLIQGPPGTGKTSTSVA-IIRELHSHVK-SRILVCAPSNVAVD 429

Query: 77  EMSHRV 82
            ++ RV
Sbjct: 430 HLAQRV 435


>gi|237728393|ref|ZP_04558874.1| MC29 [Citrobacter sp. 30_2]
 gi|226909871|gb|EEH95789.1| MC29 [Citrobacter sp. 30_2]
          Length = 471

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            + A AG GKTH++      L +A + P   L LTHT A    +  R+        +   
Sbjct: 13  LIVAPAGCGKTHLITD---ALSVAQSKPY--LVLTHTTAGVTALKKRLSRFAIPPRNYIV 67

Query: 95  EILSAEITKIQGKKPNKSDMS 115
             +     KI G  P    + 
Sbjct: 68  TTIDGWALKIAGCFPGLCPLD 88


>gi|189184387|ref|YP_001938172.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181158|dbj|BAG40938.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 659

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N        I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 329 VYYNDIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 383

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 384 HKLATNRR-QKVIGLAPTHKAVSELRSK 410


>gi|72389186|ref|XP_844888.1| regulator of nonsense transcripts 1 [Trypanosoma brucei TREU927]
 gi|62359996|gb|AAX80419.1| regulator of nonsense transcripts 1, putative [Trypanosoma brucei]
 gi|70801422|gb|AAZ11329.1| regulator of nonsense transcripts 1, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 842

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ ++ + L  +       +    G+GKT   V  ++R L ++   S +L    +  A  
Sbjct: 372 LNYSQEQALRVALRNPLTLIQGPPGTGKTSTSVA-IIRELHSHVK-SRILVCAPSNVAVD 429

Query: 77  EMSHRV 82
            ++ RV
Sbjct: 430 HLAQRV 435


>gi|189183096|ref|YP_001936881.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179867|dbj|BAG39647.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 869

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N+       I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 258 VYYNNIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 312

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 313 HKLATNRR-QKVIGLAPTHKAVSELRSK 339


>gi|54298009|ref|YP_124378.1| hypothetical protein lpp2066 [Legionella pneumophila str. Paris]
 gi|53751794|emb|CAH13218.1| hypothetical protein lpp2066 [Legionella pneumophila str. Paris]
          Length = 1023

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 12/138 (8%)

Query: 82  VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141
           +LE      +   EILS ++ +   ++ N +     R L    +      ++     F  
Sbjct: 526 ILEGKITRLNDDAEILSHKLGENLSEEVNSAFDKLLRTLRPEDVNND---RINEFDGFKN 582

Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISN 200
            +++   LE+            +S++L+EE  KS   +   D  NE++   F E+LEI  
Sbjct: 583 QLIRL--LESK-PPQIK-----ESRELLEEKLKSFEKTDPPDEVNEDMTSFFGELLEIIP 634

Query: 201 DEDIETLISDIISNRTAL 218
           D D+  L+ D        
Sbjct: 635 DYDVNKLMEDANQLYDEF 652


>gi|295106505|emb|CBL04048.1| PIF1 helicase. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 614

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHIL 48
          D  +  ++E L A    R+ ++S NAG+GK+++L
Sbjct: 7  DRFTPEQAEALSALRDGRNVFLSGNAGTGKSYVL 40


>gi|228932441|ref|ZP_04095322.1| UvrD/REP helicase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228827131|gb|EEM72884.1| UvrD/REP helicase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|167635442|ref|ZP_02393756.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0442]
 gi|254740158|ref|ZP_05197850.1| helicase, UvrD/Rep family protein [Bacillus anthracis str. Kruger
           B]
 gi|167529270|gb|EDR92023.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0442]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|218902236|ref|YP_002450070.1| helicase, UvrD/Rep family [Bacillus cereus AH820]
 gi|218534800|gb|ACK87198.1| helicase, UvrD/Rep family [Bacillus cereus AH820]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|111223214|ref|YP_714008.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111150746|emb|CAJ62448.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 866

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           D+++  + EQ  ++ +D   S  V    G+GKT + + R   LL  +
Sbjct: 319 DIVATIQPEQDEIVRADLAVSVCVQGAPGTGKTAVGLHRAAYLLFTH 365


>gi|38234008|ref|NP_939775.1| putative ATP-dependent helicase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200270|emb|CAE49954.1| Putative ATP-dependent helicase [Corynebacterium diphtheriae]
          Length = 1317

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LL 57
           +S    S   +L   ++ +++ A+       + A   GSGKT  + +  L L      L+
Sbjct: 80  SSIPVISYPDNLPVSSQRDEIAAAIQENQVVIIAGETGSGKTTQIPKICLDLGHGITGLI 139

Query: 58  ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
            +  P  L   T  +  A E+   + E +       D +  +   K+       ++M + 
Sbjct: 140 GHTQPRRLAARTVAERIADELDQPIGESVGYAIRFDDRVSPSTCIKLMTDGILLAEMQRD 199

Query: 118 RHL 120
           R+L
Sbjct: 200 RYL 202


>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
          VL426]
 gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
          VL426]
 gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
 gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3894-4]
          Length = 423

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 7  FQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NA 60
            E  E +     T+ +      +   R    SA  G+GKT   V   L+ LL      A
Sbjct: 14 LLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKA 73

Query: 61 HPSTLLCLTHTK 72
           P+ +L LT T+
Sbjct: 74 GPARILILTPTR 85


>gi|68476381|ref|XP_717840.1| hypothetical protein CaO19.5469 [Candida albicans SC5314]
 gi|68476570|ref|XP_717746.1| hypothetical protein CaO19.12924 [Candida albicans SC5314]
 gi|46439472|gb|EAK98790.1| hypothetical protein CaO19.12924 [Candida albicans SC5314]
 gi|46439573|gb|EAK98890.1| hypothetical protein CaO19.5469 [Candida albicans SC5314]
          Length = 1064

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 26  LASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANAH--------PSTLLCLTHTKAAAA 76
           +A  PTRS  + A+ G GKT + LV  +   +             P   L        A 
Sbjct: 783 VAFTPTRSRAILAHTGFGKTFVFLVPMIAYKIGGGGEHFVHLVLMPYRFL--------AE 834

Query: 77  EMSHRVLEII 86
           +M  R+   +
Sbjct: 835 QMKTRLRRYL 844


>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
 gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
          Length = 423

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 7  FQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NA 60
            E  E +     T+ +      +   R    SA  G+GKT   V   L+ LL      A
Sbjct: 14 LLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKA 73

Query: 61 HPSTLLCLTHTK 72
           P+ +L LT T+
Sbjct: 74 GPARILILTPTR 85


>gi|65318432|ref|ZP_00391391.1| COG3973: Superfamily I DNA and RNA helicases [Bacillus anthracis
           str. A2012]
          Length = 776

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|325088278|gb|EGC41588.1| helicase [Ajellomyces capsulatus H88]
          Length = 732

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 12  ETIDL-ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           E ID  ++ ++ E +  A      A +    G+GKT+ L++ +L+ L  N     +L 
Sbjct: 229 EFIDPTLNDSQREAIRFALAAKEIALIHGPPGTGKTYTLIELILQFLRQNL---RILV 283


>gi|315637540|ref|ZP_07892747.1| probable DNA helicase [Arcobacter butzleri JV22]
 gi|315478131|gb|EFU68857.1| probable DNA helicase [Arcobacter butzleri JV22]
          Length = 504

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ 50
          +  TK ++ + +    S  ++A AGSGKT  L++
Sbjct: 1  MKLTKEQEKIINSKELSFKINAVAGSGKTTTLLE 34


>gi|304410127|ref|ZP_07391746.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307302161|ref|ZP_07581919.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351536|gb|EFM15935.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306914199|gb|EFN44620.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 433

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 2   IYHNSFQEHSETIDLISQ------TKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVL 53
           +   SF    E +  IS       T  +Q       R   V A+A  G+GKT      +L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 54  RLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
           + ++ N        + +L LT T+    E++ +V + +TA+     + L+  +  I G  
Sbjct: 61  QKMVENPSETLKSNARVLILTPTR----ELAAQVADNVTAYC----KYLNFSVLTIYGGV 112

Query: 109 PNKSDMSKARHLLITILETPGGL 131
             ++   K +     I+ TPG L
Sbjct: 113 KIETQAQKLKRGADVIVATPGRL 135


>gi|302811866|ref|XP_002987621.1| hypothetical protein SELMODRAFT_126404 [Selaginella moellendorffii]
 gi|300144513|gb|EFJ11196.1| hypothetical protein SELMODRAFT_126404 [Selaginella moellendorffii]
          Length = 1371

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL-- 92
            V    G+GKT   VQ +L +L  N      L +TH+  A  ++  ++++      +L  
Sbjct: 811 MVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLLITHSNQALNDLFEKIMQRDVPARYLLR 869

Query: 93  ---SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
               ++ L  E+   +  + N + +++   LL  +      L V
Sbjct: 870 LGQGEQELETELDFSRQGRVN-AMLTRRLELLAEVERLARTLSV 912


>gi|257440763|ref|ZP_05616518.1| UvrD/Rep helicase [Faecalibacterium prausnitzii A2-165]
 gi|257196737|gb|EEU95021.1| UvrD/Rep helicase [Faecalibacterium prausnitzii A2-165]
          Length = 698

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT-KAAA 75
           +    V   AG+GKT + + R   L         +L  T+T   AA
Sbjct: 250 SGPVRVLGGAGTGKTVVALHRAKYLASQCTGQQRILFTTYTANLAA 295


>gi|229108607|ref|ZP_04238219.1| UvrD/REP helicase [Bacillus cereus Rock1-15]
 gi|228674862|gb|EEL30094.1| UvrD/REP helicase [Bacillus cereus Rock1-15]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|227509264|ref|ZP_03939313.1| DNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191262|gb|EEI71329.1| DNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 772

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 22  SEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
            +  +  D   +  V    AGSGKT  ++QR+  LL
Sbjct: 213 EQNDIIRDTKSNLLVVQGVAGSGKTSAILQRIAFLL 248


>gi|227522362|ref|ZP_03952411.1| possible DNA helicase [Lactobacillus hilgardii ATCC 8290]
 gi|227090500|gb|EEI25812.1| possible DNA helicase [Lactobacillus hilgardii ATCC 8290]
          Length = 772

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 22  SEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
            +  +  D   +  V    AGSGKT  ++QR+  LL
Sbjct: 213 EQNDIIRDTKSNLLVVQGVAGSGKTSAILQRIAFLL 248


>gi|154273326|ref|XP_001537515.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150416027|gb|EDN11371.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 457

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 19/125 (15%)

Query: 52  VLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109
           +L  LL N  P    +L          E   RV++ I      S          +     
Sbjct: 229 MLHALLNNPDPETGEVL---------GE--ERVIDEIITIFIGSATAPCLVSFAVYYLLQ 277

Query: 110 NKSDMSKARHLLITILETPGGLKVQTIHAF--CEAIMQQFPLEANITSHFAI----ADEE 163
           N  ++ KAR  + +IL   G +    + +F  CEAI+++    + +   F I    +DE 
Sbjct: 278 NPEEIVKARDEIDSILGANGEITSSNLSSFAYCEAILREAFRLSAVAPAFNIEPIPSDEP 337

Query: 164 QSKKL 168
              +L
Sbjct: 338 DEVQL 342


>gi|146283757|ref|YP_001173910.1| putative DNA helicase [Pseudomonas stutzeri A1501]
 gi|145571962|gb|ABP81068.1| putative DNA helicase [Pseudomonas stutzeri A1501]
          Length = 695

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 25/203 (12%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST-LLCLTHTKAAAAEMSHRVL----- 83
                V+  AG+GKT + + R  RL    +A P   +L  T TK  A ++   +      
Sbjct: 255 NGPVKVTGGAGTGKTVVAMHRAARLARQYSALPGRPVLFTTFTKTLAEDIRQHLALLCTP 314

Query: 84  EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143
           + +     ++ +  ++ + +  G   N       R        +     V        + 
Sbjct: 315 QELEKIQVVNLDQWASSVLRRFGYPHNLLYNEADRRRYWQSALSAMPAAVD----LSASF 370

Query: 144 MQQFPLEANITSHFAIADE----------EQSKKLIEEAKKSTLAS----IMLDNNEELK 189
           M+       +      A++           Q  + + ++     A     +   N  E +
Sbjct: 371 MRAEYERVVLPQACETAEDYIRASRVGRGGQLGRALRKSIWPVFAEYRAQLQAANLREPE 430

Query: 190 KAFYEILEISNDEDIETLISDII 212
           +AF E  ++   E  E  I  ++
Sbjct: 431 EAFREASQLVRKEKPELGIRAMV 453


>gi|308807118|ref|XP_003080870.1| RENT1_NEUCR Regulator of nonsense transcripts 1 homolog
           ref|XP_323582.1| h (ISS) [Ostreococcus tauri]
 gi|116059331|emb|CAL55038.1| RENT1_NEUCR Regulator of nonsense transcripts 1 homolog
           ref|XP_323582.1| h (ISS) [Ostreococcus tauri]
          Length = 1084

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           ++Q++ + L+A+   R   +    G+GKTH  V  V   L     P  +LC
Sbjct: 593 MNQSQIDALMAALFNRITLIQGPPGTGKTHTAVALVQMWLRCGTSP--ILC 641


>gi|73852610|ref|YP_293894.1| hypothetical protein EhV141 [Emiliania huxleyi virus 86]
 gi|72415326|emb|CAI65563.1| hypothetical protein EhV141 [Emiliania huxleyi virus 86]
          Length = 420

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            ++  +S +AG+GK+  L + ++  L     P+ +  ++ T  AAA ++      I AW 
Sbjct: 17  GKNVLISGSAGTGKSF-LTRHIIHQLKLQKGPNNVGVVSPTGIAAANIN---GTTIHAWG 72

Query: 91  HLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGG 130
            +      A   I K +G +   +    AR L+I  +    G
Sbjct: 73  GIGIGDGDATALIKKARGNRLAFTRWKTARVLIIDEVSMLDG 114


>gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 411

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS----TL--LCLTHTKAA 74
           + E +      ++  VSA  G+GKT      +++LL            +  L +T T+  
Sbjct: 28  QQEAIPLILEKKNVIVSAQTGTGKTAAFALPIIQLLFDGQDAEKGEKKIKSLIITPTR-- 85

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
             E++ ++LE   ++S  S+ + ++ +      +P K  +SK   +L   + TPG L
Sbjct: 86  --ELAIQILENFKSFSKYSN-LRASAVFGGVSLEPQKEILSKGIDIL---IATPGRL 136


>gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 433

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 2   IYHNSFQEHSETIDLISQ------TKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVL 53
           +   SF    E +  IS       T  +Q       R   V A+A  G+GKT      +L
Sbjct: 1   MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 54  RLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
           + ++ N        + +L LT T+    E++ +V + +TA+     + L+  +  I G  
Sbjct: 61  QKMVENPSETLKSNARVLILTPTR----ELAAQVADNVTAYC----KYLNFSVLTIYGGV 112

Query: 109 PNKSDMSKARHLLITILETPGGL 131
             ++   K +     I+ TPG L
Sbjct: 113 KIETQAQKLKRGADVIVATPGRL 135


>gi|283481354|emb|CAZ69470.1| putative DNA helicase [Emiliania huxleyi virus 99B1]
          Length = 420

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            ++  +S +AG+GK+  L + ++  L     P+ +  ++ T  AAA ++      I AW 
Sbjct: 17  GKNVLISGSAGTGKSF-LTRHIIHQLKLQKGPNNVGVVSPTGIAAANIN---GTTIHAWG 72

Query: 91  HLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGG 130
            +      A   I K +G +   +    AR L+I  +    G
Sbjct: 73  GIGIGDGDATALIKKARGNRLAFTRWKTARVLIIDEVSMLDG 114


>gi|242040747|ref|XP_002467768.1| hypothetical protein SORBIDRAFT_01g033760 [Sorghum bicolor]
 gi|241921622|gb|EER94766.1| hypothetical protein SORBIDRAFT_01g033760 [Sorghum bicolor]
          Length = 1632

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 35   WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
             V    G+GKT   VQ +L +L  N      L +TH+  A  ++  ++++      +L  
Sbjct: 910  MVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYL-- 966

Query: 95   EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
             +   +  +      + S   +   +L+  LE  G + 
Sbjct: 967  -LRLGQGEQELATDLDFSRQGRVNAMLVRRLELLGEVS 1003


>gi|296806473|ref|XP_002844046.1| DNA-binding protein SMUBP-2 [Arthroderma otae CBS 113480]
 gi|238845348|gb|EEQ35010.1| DNA-binding protein SMUBP-2 [Arthroderma otae CBS 113480]
          Length = 720

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 12  ETID-LISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           E +D  ++ ++ E +  A      A +    G+GKTH L++ + +L+L       +L 
Sbjct: 229 EFMDPSLNDSQREAVRFALASREIALIHGPPGTGKTHTLIELIRQLVLRK---KRILV 283


>gi|257057472|ref|YP_003135304.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
 gi|256587344|gb|ACU98477.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
          Length = 737

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 36  VSANAGSGKTHILVQR---VLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
           V+  AG+GKT   + R   + + L   A  + +L  T T+  A      +   +T  +  
Sbjct: 264 VTGGAGTGKTVTAIHRARHLAQRLDEEASDAKVLFTTFTRNLAQN----IESQLTELAGP 319

Query: 93  SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
                  ++  I         +     L +   + PG L+
Sbjct: 320 ELMRRRVDVVNIDSLAQRVLRIGDGARLTLRKDDDPGVLQ 359


>gi|227512277|ref|ZP_03942326.1| possible DNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227084452|gb|EEI19764.1| possible DNA helicase [Lactobacillus buchneri ATCC 11577]
          Length = 772

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 22  SEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
            +  +  D   +  V    AGSGKT  ++QR+  LL
Sbjct: 213 EQNDIIRDTKSNLLVVQGVAGSGKTSAILQRIAFLL 248


>gi|157737765|ref|YP_001490449.1| putative DNA helicase [Arcobacter butzleri RM4018]
 gi|157699619|gb|ABV67779.1| putative DNA helicase [Arcobacter butzleri RM4018]
          Length = 504

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ 50
          +  TK ++ + +    S  ++A AGSGKT  L++
Sbjct: 1  MKLTKEQEKIINSKELSFKINAVAGSGKTTTLLE 34


>gi|257875528|ref|ZP_05655181.1| DNA/RNA helicase superfamily I [Enterococcus casseliflavus EC20]
 gi|257809694|gb|EEV38514.1| DNA/RNA helicase superfamily I [Enterococcus casseliflavus EC20]
          Length = 759

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q    Q++     +   +   AGSGKT  L+QRV  LL  N
Sbjct: 206 QKAQNQIIRDTTNKFLLIEGIAGSGKTSALLQRVAFLLYRN 246


>gi|198284628|ref|YP_002220949.1| exodeoxyribonuclease V subunit alpha [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198249149|gb|ACH84742.1| exodeoxyribonuclease V, alpha subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 650

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 26/167 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKA 73
           D +   K    LA     S  ++   G+GKT+    R + LL+A +  P  ++    T  
Sbjct: 182 DALPWQKIACALALRSHFSI-ITGGPGTGKTYT-AARFMALLMATSSTPLRIVLAAPTGK 239

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA     R+ E + +           ++++I       + +  AR L   +   P     
Sbjct: 240 AAV----RIDESLQSAVGTLP-----QLSQIPDMTAAFARLRPARTLHSLLGARPDS--- 287

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                      ++F  +A       +   +++  + +E   + L ++
Sbjct: 288 -----------RRFRHDAANPLELDVLVVDEASMIHQEMMAALLRAL 323


>gi|218896098|ref|YP_002444509.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
 gi|218546034|gb|ACK98428.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
          Length = 778

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
 gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
          Length = 454

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 77/228 (33%), Gaps = 29/228 (12%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPSTLLCLTHTKAA 74
           + + + A    R    SA  G+GKT      +L+ L+          P   L LT T+  
Sbjct: 28  QQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQPHAKGRRPVRALILTPTREL 87

Query: 75  AAEMSHRVLEI-----ITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETP 128
           AA++   V +      I +        ++ ++ K++ G     +   +   L        
Sbjct: 88  AAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147

Query: 129 GGLKVQTIH--------AFCEAIMQQFPLEANITSH-----FAIADEEQSKKLIEEAKKS 175
             +++  +          F   I +   + A +        F+    +  K L E+   +
Sbjct: 148 DQIEILVLDEADRMLDMGFIHDIRR---VLAKLPPKRQNLLFSATFSDDIKALAEKLLHN 204

Query: 176 TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFF 223
            L   +   N    +   + +   + +    L+S +I      +++ F
Sbjct: 205 PLEIEVARRNTA-SEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVF 251


>gi|311033112|ref|ZP_07711202.1| Superfamily I DNA and RNA helicase [Bacillus sp. m3-13]
          Length = 278

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           +T+D   +  ++Q+      ++  +   AGSGKT IL  R  ++L        +L L
Sbjct: 161 KTMDFHQENMAKQIG----DKNRLIRGVAGSGKTIILASR-AKMLAKENPNWRILIL 212


>gi|299751585|ref|XP_001830364.2| hypothetical protein CC1G_02000 [Coprinopsis cinerea okayama7#130]
 gi|298409441|gb|EAU91511.2| hypothetical protein CC1G_02000 [Coprinopsis cinerea okayama7#130]
          Length = 1359

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           +S  E    +D      S+     D      + +    G+GK+ + ++ +LR+L+  A P
Sbjct: 690 DSISEARTALDNSRLDPSQATAVVDALTREISLIQGPPGTGKSFVGIE-LLRVLVKTATP 748

Query: 63  STLLCLTHTKAA 74
             +L +  T  A
Sbjct: 749 --ILMIAFTNHA 758


>gi|270294229|ref|ZP_06200431.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275696|gb|EFA21556.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 686

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL---LANA 60
           S     +  ++++  + EQ     ++  R+  +   AGSGKT I + R+  LL     + 
Sbjct: 189 SSNADDKMKNIVATIQREQNRIIRNEDIRTLIIQGVAGSGKTSIALHRIAYLLYTFRDSI 248

Query: 61  HPSTLLCL 68
               +L +
Sbjct: 249 SSKDILII 256


>gi|227532960|ref|ZP_03963009.1| DNA helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227189361|gb|EEI69428.1| DNA helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 762

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ  +  D T    V    AGSGKT  ++QR+  LL
Sbjct: 196 QSDEYMKNIVATIQREQNDIIRDTTSDLLVVQGVAGSGKTSAVLQRIAYLL 246


>gi|159467975|ref|XP_001692158.1| hypothetical protein CHLREDRAFT_145703 [Chlamydomonas reinhardtii]
 gi|158278344|gb|EDP04108.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 2689

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPT---RSAWVSANAGSGKTHI---LVQRVLRLLLANA 60
            +E S   D   +  S Q  A +     R A +    G+GKT +   L   +LR    ++
Sbjct: 515 AEELSRLEDKGIRLHSTQRDALERGLTQRVALIQGPPGTGKTFVGALLCDAILR----HS 570

Query: 61  HPSTLLCLTHTKAA 74
               +L + +T  A
Sbjct: 571 STERILVVCYTNHA 584


>gi|148654243|ref|YP_001274448.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148566353|gb|ABQ88498.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
          Length = 671

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
            +  QE +  +DL  +   E    S       VS  AGSGK+ ++V R  RLL       
Sbjct: 201 LSPVQEWALKVDL--ELSDEAGSVSRDMGVRQVSGVAGSGKSLLVVYR-ARLLRQYFPQK 257

Query: 64  TLLCLTHTK 72
            +L LT  +
Sbjct: 258 RILVLTFNR 266


>gi|238918331|ref|YP_002931845.1| DNA helicase [Edwardsiella ictaluri 93-146]
 gi|238867899|gb|ACR67610.1| DNA helicase [Edwardsiella ictaluri 93-146]
          Length = 490

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKA 73
          T  +  +         V+A AG+GKT  LVQ       A A+P + +L L + +A
Sbjct: 6  TPEQNAIIEWRGNQLVVNAFAGTGKTTTLVQ------FAQANPESKMLYLAYNRA 54


>gi|254383778|ref|ZP_04999126.1| DEAD/DEAH box helicase [Streptomyces sp. Mg1]
 gi|194342671|gb|EDX23637.1| DEAD/DEAH box helicase [Streptomyces sp. Mg1]
          Length = 1066

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 38/156 (24%)

Query: 31  TRSAWVSANAGSGKTHI---LVQRVLRL-------------LLANAHP-----STLLCLT 69
                + A+AGSGK++    L  R+  L             +     P       ++ +T
Sbjct: 304 GHDYLLMASAGSGKSNTIGWLAHRLSDLHTPTDPRELDPEGIAKGLKPGVPVFDKVIVIT 363

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
                         +     + L + + + E T     K ++   +K   L   +    G
Sbjct: 364 --------------DRRNLDAQLRETVGNFEQTAGLVVKIDEKYGAKGEQLAKALSRDTG 409

Query: 130 GLKVQTIHAFCEAI--MQQFPLEANITSHFAIADEE 163
            +   T+H+F   +  +Q+ P E    S FAI  +E
Sbjct: 410 KIVTVTLHSFPALLDYLQRNPTEIQ-GSRFAIIVDE 444


>gi|190574392|ref|YP_001972237.1| hypothetical protein Smlt2455 [Stenotrophomonas maltophilia
          K279a]
 gi|190012314|emb|CAQ45940.1| putative conjugative transposon conserved hypothetical protein
          [Stenotrophomonas maltophilia K279a]
          Length = 365

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71
          P+ +  + + AGSGKT +LV++ L        P   +  +T+T
Sbjct: 5  PSPNRVLLSAAGSGKTTLLVRQAL------ERPGRRIAIVTYT 41


>gi|82544160|ref|YP_408107.1| ATP-dependent RNA helicase HrpA [Shigella boydii Sb227]
 gi|81245571|gb|ABB66279.1| helicase, ATP-dependent [Shigella boydii Sb227]
          Length = 1281

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 73/217 (33%), Gaps = 47/217 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHIL------VQRVLRLLLANAHPSTLLCLTH 70
           +SQ K + L A    +   V+   GSGKT  L      + R ++ L+ +  P  L   T 
Sbjct: 60  VSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTV 119

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL---------- 120
               A E+       I      SD +    + K+       +++ + R L          
Sbjct: 120 ANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDE 179

Query: 121 --------------LITILETPGGLKV----QTIH------AFCEA-IM----QQFPLEA 151
                         L  +L     LK+     TI        F  A I+    + +P+E 
Sbjct: 180 AHERSLNIDFLLGYLKELLPRRPDLKIIITSGTIDPERFSRHFNNAPIIEVSGRTYPVEV 239

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
                   AD+ +  +L  +A    +  +  ++  ++
Sbjct: 240 RYRPIVEEADDTERDQL--QAIFDAVDELSQESPGDI 274


>gi|47567526|ref|ZP_00238237.1| ATP-dependent DNA helicase rep [Bacillus cereus G9241]
 gi|47555721|gb|EAL14061.1| ATP-dependent DNA helicase rep [Bacillus cereus G9241]
          Length = 274

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
            +H ++I    Q +  +++  D  R   V   AGSGKT   +QR+  LL
Sbjct: 200 NKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLL 248


>gi|311739625|ref|ZP_07713460.1| ATP-dependent helicase HrpA [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305441|gb|EFQ81509.1| ATP-dependent helicase HrpA [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 1295

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLL 66
           D +  T  +  +A     +   + A   GSGKT  + +  L L       + +  P  + 
Sbjct: 68  DALPVTTRKDDIAEAIRDNQVVIIAGETGSGKTTQIPKICLELGRGRRGFIGHTQPRRIA 127

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             T  +  AAE+  ++ E +       D +      K+       ++M + R L
Sbjct: 128 ARTVAERIAAELDQKIGESVGYAIRFDDRVSETTAVKLMTDGILLAEMQRDRFL 181


>gi|50083638|ref|YP_045148.1| putative DNA helicase [Acinetobacter sp. ADP1]
 gi|49529614|emb|CAG67326.1| putative DNA helicase [Acinetobacter sp. ADP1]
          Length = 500

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ  A D  R   S  V A AG+GKT  L     +++         + L   KA A+E
Sbjct: 12 EQATAIDNARLGESFKVIAYAGTGKTTTL-----QMISDAMPERRGMYLAFNKAIASE 64


>gi|33519732|ref|NP_878564.1| exonuclease V, alpha chain [Candidatus Blochmannia floridanus]
 gi|33504077|emb|CAD83338.1| exonuclease V, alpha chain [Candidatus Blochmannia floridanus]
          Length = 640

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
             +S  AG+GKT  + Q +  LLL N     +  +T T  +A
Sbjct: 187 ILISGEAGTGKTSTIAQIITALLLYNNKL-RIKMVTPTGKSA 227


>gi|116496058|ref|YP_807792.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116106208|gb|ABJ71350.1| Superfamily I DNA and RNA helicase [Lactobacillus casei ATCC 334]
          Length = 762

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ  +  D T    V    AGSGKT  ++QR+  LL
Sbjct: 196 QSDEYMKNIVATIQREQNDIIRDTTSDLLVVQGVAGSGKTSAVLQRIAYLL 246


>gi|312084917|ref|XP_003144471.1| hypothetical protein LOAG_08893 [Loa loa]
 gi|307760365|gb|EFO19599.1| hypothetical protein LOAG_08893 [Loa loa]
          Length = 1024

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           +  + E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 833 TPAQVEAIKAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNWPEQRTLIVTHSNQALNQ 891

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
           +  +++++     HL      +E L  E    +  + N   + K   LL  + +    L 
Sbjct: 892 LFEKIIQLDVDERHLLRLGHGEEALETEKDFSRYGRVN-YVLQKRLDLLKEVEKLQEALD 950

Query: 133 VQ 134
           V 
Sbjct: 951 VG 952


>gi|294649097|ref|ZP_06726539.1| DNA helicase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824980|gb|EFF83741.1| DNA helicase [Acinetobacter haemolyticus ATCC 19194]
          Length = 502

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
          EQ +A D  R   S  V A AG+GKT  L     +++         + L   KA A E
Sbjct: 12 EQAIAIDNARLGQSFKVIAYAGTGKTTTL-----QMISEAMPERRGMYLAFNKAIATE 64


>gi|24372961|ref|NP_717003.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347107|gb|AAN54448.1|AE015582_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 433

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHT 71
           ++  + + + A    +    SA  G+GKT      +L+ ++ N        + +L LT T
Sbjct: 24  MTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSNTRVLILTPT 83

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +    E++ +V E + A+S    + L+  +  I G    ++   K +     I+ TPG L
Sbjct: 84  R----ELAAQVAENVEAYS----KYLNFSVLTIYGGVKVETQAQKLKRGADIIVATPGRL 135


>gi|89896205|ref|YP_519692.1| hypothetical protein DSY3459 [Desulfitobacterium hafniense Y51]
 gi|219668004|ref|YP_002458439.1| helicase [Desulfitobacterium hafniense DCB-2]
 gi|89335653|dbj|BAE85248.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538264|gb|ACL20003.1| helicase [Desulfitobacterium hafniense DCB-2]
          Length = 748

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 8   QEHSETIDLISQT--KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN 59
           Q  S T+  I +T  + +  +  D       V   AGSGKT + + RV  L+   
Sbjct: 197 QNTSPTMKTIVETIQQDQDRVIRDLEMELLMVQGAAGSGKTSVALHRVAYLMYQG 251


>gi|313227334|emb|CBY22480.1| unnamed protein product [Oikopleura dioica]
          Length = 647

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAW----VSANAGSGKTHILVQRVLRLLLANAHP 62
           +Q  +  I  ++  + + +L+       +    +   AG+GKT  +V+ + R+++     
Sbjct: 362 YQVTASMISGLNDFQHDAVLSVLDGAGLFHPKIIFGPAGTGKTRTMVE-LARIIIT-CST 419

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSH 91
             +L +  + +AA  +  R+ E +   + 
Sbjct: 420 GRVLIVAPSNSAADILLARLSEALGERAE 448


>gi|302803145|ref|XP_002983326.1| hypothetical protein SELMODRAFT_117836 [Selaginella moellendorffii]
 gi|300149011|gb|EFJ15668.1| hypothetical protein SELMODRAFT_117836 [Selaginella moellendorffii]
          Length = 1372

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL-- 92
            V    G+GKT   VQ +L +L  N      L +TH+  A  ++  ++++      +L  
Sbjct: 812 MVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLLITHSNQALNDLFEKIMQRDVPARYLLR 870

Query: 93  ---SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
               ++ L  E+   +  + N + +++   LL  +      L V
Sbjct: 871 LGQGEQELETELDFSRQGRVN-AMLTRRLELLAEVERLARTLSV 913


>gi|116491422|ref|YP_810966.1| superfamily I DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|118587032|ref|ZP_01544463.1| DNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|290891001|ref|ZP_06554065.1| hypothetical protein AWRIB429_1455 [Oenococcus oeni AWRIB429]
 gi|116092147|gb|ABJ57301.1| Superfamily I DNA and RNA helicase [Oenococcus oeni PSU-1]
 gi|118432553|gb|EAV39288.1| DNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|290479400|gb|EFD88060.1| hypothetical protein AWRIB429_1455 [Oenococcus oeni AWRIB429]
          Length = 762

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 22  SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
            +  +  D       V   AGSGKT  ++QRV  LL
Sbjct: 214 EQNRIIRDTDSDLLFVQGAAGSGKTAAVLQRVAYLL 249


>gi|327412893|emb|CAX67907.1| conserved hypothetical protein [Salmonella bongori]
          Length = 503

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL 53
          S T  +  + +       V A AGSGKT  L +R  
Sbjct: 4  SDTPEQAAVIAWKGERLVVCAFAGSGKTTTL-RRFA 38


>gi|300362252|ref|ZP_07058428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
 gi|300353243|gb|EFJ69115.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 12  ETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           E I+    TK +  +  A    ++  V A  GSGKTH  +  +L ++  NA  +    +T
Sbjct: 25  EKINFSKPTKVQAAVIPALLNNKNVVVQAATGSGKTHAYLLPLLNMIDENAPVTQ-AVVT 83

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT-ILETP 128
              A + E+++++ ++       S   L+  I  + G       + KA +     I+ TP
Sbjct: 84  ---APSRELANQLYKVARQLRDASG--LNISIEYLGGGNDRNRQIEKAENRAPQLIIATP 138

Query: 129 GGLKVQTIHAFCEA 142
           G L     H F   
Sbjct: 139 GRL-----HDFASK 147


>gi|197121192|ref|YP_002133143.1| CRISPR-associated helicase Cas3 [Anaeromyxobacter sp. K]
 gi|196171041|gb|ACG72014.1| CRISPR-associated helicase Cas3 [Anaeromyxobacter sp. K]
          Length = 888

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 5/124 (4%)

Query: 10  HSETIDLISQTKSEQLL---ASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTL 65
            ++  D+     ++Q +   A  P      + A  GSGKT   V R +RL          
Sbjct: 261 FTDLFDVERPRPAQQAVLDLAVAPEGGLSILEAETGSGKTEAAVARFVRLFAEGRVDGMY 320

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
             L  T+ +A ++  R+++ +        E     +      + +     +   L    +
Sbjct: 321 FALP-TRTSATQIHRRLVDAMRRCFPDERERPPVVLAVPGYLRVDDLVGGRDPRLPPFAV 379

Query: 126 ETPG 129
             P 
Sbjct: 380 CWPD 383


>gi|145596588|ref|YP_001160885.1| hypothetical protein Strop_4077 [Salinispora tropica CNB-440]
 gi|145305925|gb|ABP56507.1| hypothetical protein Strop_4077 [Salinispora tropica CNB-440]
          Length = 695

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  L+ +D   S  V    G+GKT + + R   LL
Sbjct: 181 DIVATIQPEQDELVRADLDTSICVQGAPGTGKTAVGLHRAAYLL 224


>gi|39997703|ref|NP_953654.1| type IV pilus assembly protein [Geobacter sulfurreducens PCA]
 gi|39984595|gb|AAR35981.1| type IV pilus assembly protein, putative [Geobacter sulfurreducens
           PCA]
 gi|298506636|gb|ADI85359.1| PilB/PulE/GspE family ATPase [Geobacter sulfurreducens KN400]
          Length = 645

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 51/224 (22%)

Query: 4   HNSFQEHSETIDLISQTKSEQLL----ASDPTRSAWVSANAGSGKTHILVQRVLRL---- 55
            N+ Q +S   D +S T     +     + P     V    GSGKT  L   + R+    
Sbjct: 359 LNTGQAYS--FDSLSLTDRNMRIFGESITKPYGLVLVVGPTGSGKTTTLHAAIARINRPE 416

Query: 56  --LLANAHPSTL-------------LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
             +     P  +             + LT   AAA          + ++  L  +++   
Sbjct: 417 VKIWTAEDPVEITQKGLRQVQVNQRIGLTF--AAA----------LRSFLRLDPDVIMVG 464

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160
             + +       + S   HL+++ L T    +  T       ++     E  +   F+ +
Sbjct: 465 EMRDEETASIAVEASLTGHLVLSTLHTNSAPETVT------RLL-----EMGLDP-FSFS 512

Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           D          A++  L     +     +K   EI+E   +E  
Sbjct: 513 DSLLCVVAQRLARR--LCEDCRELYRPDRKELSEIIEEYGEEQF 554


>gi|37547925|gb|AAN08756.1| putative regulatory protein [Arthrobacter chlorophenolicus]
          Length = 714

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 31 TRSAWVSANAGSGKTHILVQR-------VLRLLLANAH--PSTLLC 67
           R  WV+A AG+GKT  +VQ        +  L L      P  LL 
Sbjct: 43 NRVVWVAATAGTGKTTAIVQAAATWGGPIAWLTLDGTDAAPGRLLI 88


>gi|20809004|ref|NP_624175.1| helicases [Thermoanaerobacter tengcongensis MB4]
 gi|20517673|gb|AAM25779.1| predicted helicases [Thermoanaerobacter tengcongensis MB4]
          Length = 732

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 19/72 (26%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHIL------VQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ ++  P +  W+ A  G+GKT  L       +R++ LL              T+A A 
Sbjct: 239 QRKISQLPEKRVWLRAPTGTGKTEALLLWANDAERIIYLLP-------------TQATAN 285

Query: 77  EMSHRVLEIITA 88
            M  R+  I   
Sbjct: 286 AMWKRLRAIYGE 297


>gi|282852128|ref|ZP_06261485.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
 gi|282556692|gb|EFB62297.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
          Length = 415

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 12  ETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           E I+    TK +  +  A    +S  V A  GSGKTH  +  +L ++  NA  +    +T
Sbjct: 25  EKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKTHAYLLPLLNMIDENAPVTQ-AVVT 83

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT-ILETP 128
              A + E+++++ ++       S   L+  I  + G       + KA +     I+ TP
Sbjct: 84  ---APSRELANQLYKVARQLRDASG--LNISIEYLGGGNDRNRQIEKAENRAPQLIIATP 138

Query: 129 GGLKVQTIHAFCEA 142
           G L     H F   
Sbjct: 139 GRL-----HDFASK 147


>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
 gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
          Length = 423

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 7  FQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NA 60
            E  E +     T+ +      +   R    SA  G+GKT   V   L+ LL      A
Sbjct: 14 LLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKA 73

Query: 61 HPSTLLCLTHTK 72
           P+ +L LT T+
Sbjct: 74 GPARILILTPTR 85


>gi|191639541|ref|YP_001988707.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|190713843|emb|CAQ67849.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|327383642|gb|AEA55118.1| helicase [Lactobacillus casei LC2W]
 gi|327386834|gb|AEA58308.1| Predicted helicase [Lactobacillus casei BD-II]
          Length = 762

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ  +  D T    V    AGSGKT  ++QR+  LL
Sbjct: 196 QSDEYMKNIVATIQREQNDIIRDTTSDLLVVQGVAGSGKTSAVLQRIAYLL 246


>gi|311742723|ref|ZP_07716532.1| helicase [Aeromicrobium marinum DSM 15272]
 gi|311314351|gb|EFQ84259.1| helicase [Aeromicrobium marinum DSM 15272]
          Length = 547

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAW---VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
           +L+ +  +EQ    D T++     V   AGSGKT + V++  RL  +      +  L++T
Sbjct: 203 ELVERLSAEQANILDATQALTRVEVRGGAGSGKTWLAVEQARRLAASGL---RVALLSYT 259

Query: 72  KAAAAEMSHRV 82
           +  +  M  RV
Sbjct: 260 RGLSEWMRRRV 270


>gi|290474026|ref|YP_003466900.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
 gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
          Length = 459

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 85/262 (32%), Gaps = 43/262 (16%)

Query: 8   QEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL------LAN 59
               E    +  T  +Q         +    SA  G+GKT      +L+LL         
Sbjct: 13  LRAVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQLLSESPAQAKG 72

Query: 60  AHPSTLLCLTHTKAAAAE-----------MSHR---------VLEIITAWSHLSDEILSA 99
             P   L LT T+  AA+           +  R         +   +       D +++ 
Sbjct: 73  RRPVRALILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVAT 132

Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH--- 156
               +  +  N  D+S    L++   +    +       F   I +   + + + +    
Sbjct: 133 PGRLLDLEHQNAVDLSHVEILILDEADRMLDM------GFIHDIRR---VLSKLPAKRQN 183

Query: 157 --FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214
             F+    +  K L  +  +  ++  +   N    +   + +   + +    L+S +I N
Sbjct: 184 LLFSATFSDDIKSLANKLLRDPVSIEVARRNSA-SEQIDQAVHFVDKKRKGELLSYMIGN 242

Query: 215 RTALKLIFFFFSYLWRRKIIEK 236
           +   +++ F  +     ++ E+
Sbjct: 243 QNWQQVLVFTRTKHGANRLAEQ 264


>gi|229018123|ref|ZP_04174998.1| UvrD/Rep helicase [Bacillus cereus AH1273]
 gi|229024305|ref|ZP_04180763.1| UvrD/Rep helicase [Bacillus cereus AH1272]
 gi|228736999|gb|EEL87536.1| UvrD/Rep helicase [Bacillus cereus AH1272]
 gi|228743214|gb|EEL93339.1| UvrD/Rep helicase [Bacillus cereus AH1273]
          Length = 698

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ       ++    +   AGSGKT I + R+  L+  
Sbjct: 172 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAEKNLPLLIQGVAGSGKTTIALHRLAFLIYE 231


>gi|218665442|ref|YP_002427301.1| exodeoxyribonuclease V, alpha subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218517655|gb|ACK78241.1| exodeoxyribonuclease V, alpha subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 646

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 26/167 (15%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKA 73
           D +   K    LA     S  ++   G+GKT+    R + LL+A +  P  ++    T  
Sbjct: 178 DALPWQKIACALALRSHFSI-ITGGPGTGKTYT-AARFMALLMATSSTPLRIVLAAPTGK 235

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
           AA     R+ E + +           ++++I       + +  AR L   +   P     
Sbjct: 236 AAV----RIDESLQSAVGTLP-----QLSQIPDMTAAFARLRPARTLHSLLGARPDS--- 283

Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
                      ++F  +A       +   +++  + +E   + L ++
Sbjct: 284 -----------RRFRHDAANPLELDVLVVDEASMIHQEMMAALLRAL 319


>gi|111221040|ref|YP_711834.1| putative helicase [Frankia alni ACN14a]
 gi|111148572|emb|CAJ60245.1| Putative helicase [Frankia alni ACN14a]
          Length = 939

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLAN 59
           D+I+  ++EQ        +    V    G+GKT + + R   LL  +
Sbjct: 213 DIIATLQAEQDRIIRARANGILVVDGGPGTGKTAVALHRAAYLLYND 259


>gi|262377027|ref|ZP_06070253.1| I DNA/RNA helicase [Acinetobacter lwoffii SH145]
 gi|262308065|gb|EEY89202.1| I DNA/RNA helicase [Acinetobacter lwoffii SH145]
          Length = 500

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 15 DLISQTKS-EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          DL   T + EQ  A D  R   S  V A AG+GKT  L     +++         + L  
Sbjct: 3  DLKKPTATYEQATAIDNARLGKSFKVIAYAGTGKTTTL-----QMISDAMPQRRGMYLAF 57

Query: 71 TKAAAAE 77
           KA A+E
Sbjct: 58 NKAIASE 64


>gi|260584501|ref|ZP_05852248.1| ATP-dependent DNA helicase [Granulicatella elegans ATCC 700633]
 gi|260158019|gb|EEW93088.1| ATP-dependent DNA helicase [Granulicatella elegans ATCC 700633]
          Length = 714

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 21  KSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAH 61
           K +  +     +    V+  AGSGKT IL+QR+  L+  +  
Sbjct: 173 KEQNEIIRHKQKDWLIVNGCAGSGKTTILLQRIAYLMYQSKD 214


>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
 gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
          Length = 423

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 7  FQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NA 60
            E  E +     T+ +      +   R    SA  G+GKT   V   L+ LL      A
Sbjct: 14 LLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKA 73

Query: 61 HPSTLLCLTHTK 72
           P+ +L LT T+
Sbjct: 74 GPARILILTPTR 85


>gi|331701964|ref|YP_004398923.1| superfamily I DNA/RNA helicase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129307|gb|AEB73860.1| superfamily I DNA/RNA helicase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 769

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 22  SEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
            +  +  D T +  V    AGSGKT  ++QR+  LL
Sbjct: 213 EQNDIIRDTTSNLLVVQGVAGSGKTSAILQRIAFLL 248


>gi|313898399|ref|ZP_07831936.1| UvrD/REP helicase [Clostridium sp. HGF2]
 gi|312956781|gb|EFR38412.1| UvrD/REP helicase [Clostridium sp. HGF2]
          Length = 677

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66
          +   + +Q L  +      ++   GSGKT +L+ R   L+ +    PS +L
Sbjct: 12 VELDEKKQELCCELQHPLLINGTTGSGKTFLLLARNAYLMKVEEVEPSAIL 62


>gi|167583615|ref|YP_001671805.1| phosphate starvation-inducible phoH-like protein [Enterobacteria
          phage phiEco32]
 gi|164375453|gb|ABY52861.1| phosphate starvation-inducible phoH-like protein [Enterobacteria
          phage phiEco32]
          Length = 247

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
          +Q +SE L A    +  +  A AG GKT ++   V+  L +      +L
Sbjct: 41 NQFQSELLNAIKTKQVVFTDAPAGCGKTFVITSTVIDALKSGKIQKIIL 89


>gi|163800494|ref|ZP_02194395.1| hypothetical protein 1103602000595_AND4_07424 [Vibrio sp. AND4]
 gi|159175937|gb|EDP60731.1| hypothetical protein AND4_07424 [Vibrio sp. AND4]
          Length = 374

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
             A AG+GKT  +V+  + L         +L +T+T+
Sbjct: 5  LFIACAGAGKTTRIVKESIELTDEG---KKVLVITYTR 39


>gi|16329815|ref|NP_440543.1| hypothetical protein sll1582 [Synechocystis sp. PCC 6803]
 gi|1652300|dbj|BAA17223.1| sll1582 [Synechocystis sp. PCC 6803]
          Length = 1118

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query: 27  ASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           A +      +    G+GKT I LV  V  LL  N     +  L  T  A      ++ + 
Sbjct: 684 ALEAKHYYLLQGPPGTGKTSIFLVNYVQNLLKLNKK--NIFILAFTNKAV----EQICKA 737

Query: 86  IT--AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL--KVQTI-HAFC 140
           +    +  L D +     T +      +        L    L+        V T    + 
Sbjct: 738 LKSPRYGELIDYLRLGNKTVVDESLLAEKLTGDNADLWRKYLQENQVFVTTVSTFKDKY- 796

Query: 141 EAIMQQF 147
             ++++F
Sbjct: 797 -LLLREF 802


>gi|258510102|ref|YP_003183536.1| hypothetical protein Aaci_0083 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476828|gb|ACV57147.1| conserved hypothetical protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 785

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y  S +  ++  ++++  + +Q +      S    V+  AGSGKT   +QR   LL  
Sbjct: 198 LMYALSRRSDAQMHNIVATIQRQQNVVIRDDESPALLVTGAAGSGKTSAALQRAAYLLYK 257

Query: 59  N 59
           +
Sbjct: 258 H 258


>gi|195024067|ref|XP_001985804.1| GH21007 [Drosophila grimshawi]
 gi|193901804|gb|EDW00671.1| GH21007 [Drosophila grimshawi]
          Length = 833

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 17  ISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
           + Q ++ + +   P+      V    G+GKT  +V+ +L+L L N   S +L    + +A
Sbjct: 275 LEQLQAVKHIVVGPSSQAPYIVFGPPGTGKTTTIVEAILQLRLQNPT-SRILVTAGSNSA 333

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
              ++ ++ E   + + +    L+   T+ +    +     +   L    +   G   +Q
Sbjct: 334 CDTIAIKICEYFAS-NEMMQAHLAKRATESRWVTGDVKLDHQLMRLFSRSVYIKGLSSIQ 392

Query: 135 TI---HAFCEA 142
            +   H+ C  
Sbjct: 393 PLLLKHSNCAK 403


>gi|153952379|ref|YP_001398040.1| F-box only protein 18 [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939825|gb|ABS44566.1| F-box only protein 18 [Campylobacter jejuni subsp. doylei 269.97]
          Length = 498

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 18 SQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQ 50
          S T+ +Q +          V+A AG+GKT  LVQ
Sbjct: 11 SLTQEQQAVVDFNIDDILIVNAYAGTGKTSTLVQ 44


>gi|148643141|ref|YP_001273654.1| DNA2/NAM7 helicase family transcriptional regulator
           [Methanobrevibacter smithii ATCC 35061]
 gi|148552158|gb|ABQ87286.1| transcriptional regulator (enhancer-binding protein), DNA2/NAM7
           helicase family [Methanobrevibacter smithii ATCC 35061]
          Length = 658

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 5   NSFQEHSETID-LISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHP 62
           N  +++ + ID  +++++   +  +  T + ++     G+GKT  LV+ + + +  N   
Sbjct: 159 NKKEKYIDFIDKSLNESQKNAVRNAVNTENFFLIHGPFGTGKTRTLVELIQQEVRQN--- 215

Query: 63  STLLCLTHTKAAAAEMSHRVLE-------IITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
           + +L    + +A   +  R+ +        +     +S E ++  +            ++
Sbjct: 216 NKVLVTAESNSAVDNILDRLSQNKKLKITRLGHPQRVSKENITYSLAYKAENHQLTGKIN 275

Query: 116 KARHLLITILETPGGLK 132
           K    +  I ET     
Sbjct: 276 KNYKRIEQISETRDRFT 292


>gi|117619450|ref|YP_858001.1| ATP-dependent helicase HrpB [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560857|gb|ABK37805.1| ATP-dependent helicase HrpB [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 1056

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 35/217 (16%)

Query: 26  LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
            A D   S  + A  G+GK+ +L    L L+  N  P  ++ L               E 
Sbjct: 256 AAIDNHTSVILQAPPGAGKSTLLP---LELVRQNRLPGRIIML---------------EP 297

Query: 86  ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145
               +      L+ ++ +  G++       ++R    T LE      V T       ++Q
Sbjct: 298 RRLAARNIAGFLARQLGEKVGERIGLRVRGESRTSAATRLEIVTEG-VLT------RMLQ 350

Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED-- 203
           Q P    ++    I DE   + L  +   +      +++ + L+     ++  +  +   
Sbjct: 351 QDPELTGVS--LVIFDEFHERSLHADTALAF----AIESQQGLRDDLKLLVMSATLDGMA 404

Query: 204 IETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSL 238
           +E L+ +    R+  +   I + +    R++ +E  +
Sbjct: 405 LEILLPEAPVVRSEGRGFPIDYHYRPANRQQWLEPQV 441


>gi|300214997|gb|ADJ79413.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 635

 Score = 36.0 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D       V   AGSGKT  ++QRV  LL
Sbjct: 83  KEQNKIIRDTKSDLLFVQGAAGSGKTSAVLQRVAYLL 119


>gi|296415614|ref|XP_002837481.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633353|emb|CAZ81672.1| unnamed protein product [Tuber melanosporum]
          Length = 822

 Score = 36.0 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 10/54 (18%)

Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPST---LLC 67
          S+ + + +     +RS   ++A AGSGKT  +      L LA A P     +L 
Sbjct: 51 SKEQIQAIKIIQTSRSNILINACAGSGKTTTI------LQLAAASPDQNFLILV 98


>gi|257872234|ref|ZP_05651887.1| ATP-dependent DNA helicase [Enterococcus casseliflavus EC10]
 gi|257806398|gb|EEV35220.1| ATP-dependent DNA helicase [Enterococcus casseliflavus EC10]
          Length = 467

 Score = 36.0 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q    Q++     +   +   AGSGKT  L+QRV  LL  N
Sbjct: 206 QKAQNQIIRDTTNKFLLIEGIAGSGKTSALLQRVAFLLYRN 246


>gi|311747178|ref|ZP_07720963.1| hypothetical protein ALPR1_12560 [Algoriphagus sp. PR1]
 gi|311302618|gb|EAZ83051.2| hypothetical protein ALPR1_12560 [Algoriphagus sp. PR1]
          Length = 857

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 15  DLISQTKSEQLLASD-----PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCL 68
           D +      Q    D     P R   VS   GSGKT ++V+R +RL  AN +P   +L L
Sbjct: 262 DWMLFMHPAQKRVVDQDFSGPARLLGVS---GSGKTCVIVRRSVRL--ANKYPDERILIL 316

Query: 69  T 69
           T
Sbjct: 317 T 317


>gi|302875685|ref|YP_003844318.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307689114|ref|ZP_07631560.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302578542|gb|ADL52554.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
          743B]
          Length = 472

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 6  SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
          S  +  + ++    T+ ++ +   +       V A  GSGKT      ++  L+AN +  
Sbjct: 12 SMLKSLKLMNFDVPTEVQEKVIPLALSGDDIIVKAQTGSGKTAAFAIPIIENLIANENAV 71

Query: 64 TLLCLTHTK 72
            L LT T+
Sbjct: 72 QALVLTPTR 80


>gi|228991627|ref|ZP_04151569.1| UvrD/Rep helicase [Bacillus pseudomycoides DSM 12442]
 gi|228768106|gb|EEM16727.1| UvrD/Rep helicase [Bacillus pseudomycoides DSM 12442]
          Length = 698

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAEKNMPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|195036422|ref|XP_001989669.1| GH18666 [Drosophila grimshawi]
 gi|193893865|gb|EDV92731.1| GH18666 [Drosophila grimshawi]
          Length = 929

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 16/133 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTK-- 72
           ++  +   L A+       +    G+GKTH+ ++ V  LL    +     ++ LT++   
Sbjct: 470 LNDMQRTALGAALSNEFCLIQGPPGTGKTHLSIELVNTLLQNADHLKLGPIIVLTYSNES 529

Query: 73  ------AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI-TIL 125
                  AA    H    +   +     EI    +     ++     + +   L+     
Sbjct: 530 LDKFLLKAA---KHTDSILRFGYQTRQPEIERFNVRTKIDEELVPHRLKRLWWLVKCEYK 586

Query: 126 ETPGGLKVQTIHA 138
           E    L  QT+H+
Sbjct: 587 EQFERL--QTLHS 597


>gi|170116338|ref|XP_001889360.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164635645|gb|EDQ99949.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 156

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 12  ETIDLISQTKSEQLLAS------DPTRSAWVSAN-AGSGKTHILVQRVLRLLLANAHPST 64
           +  + + Q+   QLLA        P    +V     G+ KT  +V+ +L+LL +N   + 
Sbjct: 70  KVFNSLIQSNQSQLLAVKSIVNQTPGSPPFVVFGLPGTSKTITIVEAILQLLRSNPQ-AR 128

Query: 65  LLCLTHTKAAAAEMSHRVLEIITA 88
           +L    + +AA  ++ R+   +  
Sbjct: 129 ILACAPSNSAANLIAERLSAGLNT 152


>gi|154273843|ref|XP_001537773.1| hypothetical protein HCAG_07195 [Ajellomyces capsulatus NAm1]
 gi|150415381|gb|EDN10734.1| hypothetical protein HCAG_07195 [Ajellomyces capsulatus NAm1]
          Length = 743

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 12  ETIDL-ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           E ID  ++ ++ E +  A      A +    G+GKT+ L++ +L+ L  N     +L 
Sbjct: 240 EFIDPTLNDSQREAIQFALAAKEIALIHGPPGTGKTYTLIELILQFLRQNL---RILV 294


>gi|21324141|dbj|BAB98766.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
          Length = 783

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           + +  +  D TR    V    G+GKT + + RV  LL
Sbjct: 243 REQDEIIRDTTRGVMVVQGGPGTGKTAVALHRVAYLL 279


>gi|326443536|ref|ZP_08218270.1| putative helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 762

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 12  ETIDLISQTKSEQ-LLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLAN 59
              D++   ++EQ  +   P +   V     G+GKT + + R   LL  +
Sbjct: 174 RMTDIVRTIQAEQDRIIRAPRQGILVVEGGPGTGKTAVALHRAAYLLYEH 223


>gi|324016603|gb|EGB85822.1| hypothetical protein HMPREF9542_04766 [Escherichia coli MS 117-3]
          Length = 662

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 23/167 (13%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLT-HTKAAAAEMSHRVLEIITAWSHLSDEILS 98
           AGSGKT +L+ ++  + L N  P   +  T   K  A+ M  R+ E              
Sbjct: 191 AGSGKTELLLHKLKEVYLRN--PDAKIAFTCFNKILASTMRTRIPEFFDFMRVEKQIEWG 248

Query: 99  AEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCEAIMQQFPLEANITSHF 157
            ++         K   S     +    E P GG       A C+                
Sbjct: 249 TKLFCFNSWGLTKDPFSGMYRYICHYYEIPFGGFGNGDFDALCKK--------------- 293

Query: 158 AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204
           AI+D ++S +    + +  L  + +D +++  ++F E+ E+   + +
Sbjct: 294 AISDIKKSGR----SDEKALDYVFIDESQDFPQSFIELCEMVTSKKL 336


>gi|296268750|ref|YP_003651382.1| superfamily I DNA and RNA helicase-like protein [Thermobispora
           bispora DSM 43833]
 gi|296091537|gb|ADG87489.1| Superfamily I DNA and RNA helicase-like protein [Thermobispora
           bispora DSM 43833]
          Length = 832

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           Q + ++++ SD      V    G+GKT + + R   LL  + H
Sbjct: 200 QAEQDEIIRSDHRGVLVVQGGPGTGKTAVALHRAAYLLYTHRH 242


>gi|294815177|ref|ZP_06773820.1| Putative helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294327776|gb|EFG09419.1| Putative helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 767

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 12  ETIDLISQTKSEQ-LLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLAN 59
              D++   ++EQ  +   P +   V     G+GKT + + R   LL  +
Sbjct: 179 RMTDIVRTIQAEQDRIIRAPRQGILVVEGGPGTGKTAVALHRAAYLLYEH 228


>gi|289643013|ref|ZP_06475145.1| Superfamily I DNA and RNA helicase-like protein [Frankia symbiont
           of Datisca glomerata]
 gi|289507144|gb|EFD28111.1| Superfamily I DNA and RNA helicase-like protein [Frankia symbiont
           of Datisca glomerata]
          Length = 783

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           S        D+++  ++EQ  ++ +D      V    G+GKT + + R   LL
Sbjct: 169 SAPRSGHMHDIVATLQAEQDRVIRADAGSVLVVDGGPGTGKTAVALHRAAYLL 221


>gi|222445377|ref|ZP_03607892.1| hypothetical protein METSMIALI_01005 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434942|gb|EEE42107.1| hypothetical protein METSMIALI_01005 [Methanobrevibacter smithii
           DSM 2375]
          Length = 658

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 14/138 (10%)

Query: 5   NSFQEHSETID-LISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHP 62
           N  +++ + ID  +++++   +  +  T + ++     G+GKT  LV+    L+      
Sbjct: 159 NKKEKYIDFIDKSLNESQKNAVRNAVNTENFFLIHGPFGTGKTRTLVE----LIQQEVRQ 214

Query: 63  STLLCLTH-TKAAAAEMSHRVLE-------IITAWSHLSDEILSAEITKIQGKKPNKSDM 114
           S  + +T  + +A   +  R+ +        +     +S E ++  +            +
Sbjct: 215 SNKVLVTAESNSAVDNILDRLSQNKKLKITRLGHPQRVSKENIAYSLAYKAENHQLTGKI 274

Query: 115 SKARHLLITILETPGGLK 132
           +K    +  I ET     
Sbjct: 275 NKNYKRIEQISETRDRFT 292


>gi|116330398|ref|YP_800116.1| exodeoxyribonuclease V, alpha subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116124087|gb|ABJ75358.1| Exodeoxyribonuclease V, alpha subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 615

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 35  WVSANAGSGKTHILV--QRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
            VS   G+GKT ++     +L  L     P  +  +  T  AA  ++  + E +   S +
Sbjct: 147 IVSGGPGTGKTTVVAFLLEILNQLGQLPSPEEIALVAPTGRAAQRLTESIQENLKKISEM 206

Query: 93  S 93
            
Sbjct: 207 K 207


>gi|145295509|ref|YP_001138330.1| hypothetical protein cgR_1437 [Corynebacterium glutamicum R]
 gi|140845429|dbj|BAF54428.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 783

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           + +  +  D TR    V    G+GKT + + RV  LL
Sbjct: 243 REQDEIIRDTTRGVMVVQGGPGTGKTAVALHRVAYLL 279


>gi|228997731|ref|ZP_04157337.1| UvrD/Rep helicase [Bacillus mycoides Rock3-17]
 gi|228762017|gb|EEM10957.1| UvrD/Rep helicase [Bacillus mycoides Rock3-17]
          Length = 698

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAEKNMPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 578

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--------TLL 66
           D  +  +++ + A          A  G+GKT      +L  L     P           L
Sbjct: 22  DNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAEGQAPRSQFGGKGVRAL 81

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+    E++ +V E +  +     + L    T I G       + + +  +  ++ 
Sbjct: 82  VLTPTR----ELAAQVEESVRGYG----KYLDLNSTVIFGGVGMNPQIERIKRGVDVLVA 133

Query: 127 TPGGL 131
           TPG L
Sbjct: 134 TPGRL 138


>gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 577

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--------TLL 66
           D  +  +++ + A          A  G+GKT      +L  L     P           L
Sbjct: 22  DNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAEGQAPRSQFGGKGVRAL 81

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126
            LT T+    E++ +V E +  +     + L    T I G       + + +  +  ++ 
Sbjct: 82  VLTPTR----ELAAQVEESVRGYG----KYLDLNSTVIFGGVGMNPQIERIKRGVDVLVA 133

Query: 127 TPGGL 131
           TPG L
Sbjct: 134 TPGRL 138


>gi|116328994|ref|YP_798714.1| exodeoxyribonuclease V, alpha subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121738|gb|ABJ79781.1| Exodeoxyribonuclease V, alpha subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 616

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 35  WVSANAGSGKTHILV--QRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
            VS   G+GKT ++     +L  L     P  +  +  T  AA  ++  + E +   S +
Sbjct: 148 IVSGGPGTGKTTVVAFLLEILNQLGQLPSPEEIALVAPTGRAAQRLTESIQENLKKISEM 207

Query: 93  S 93
            
Sbjct: 208 K 208


>gi|120554245|ref|YP_958596.1| superfamily I DNA/RNA helicase [Marinobacter aquaeolei VT8]
 gi|120324094|gb|ABM18409.1| superfamily I DNA and RNA helicase [Marinobacter aquaeolei VT8]
          Length = 683

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71
            AG+GKT  L+ R   L         +L  T+T
Sbjct: 267 AAGTGKTVALMHRAAWLAHQCDGDEKVLITTYT 299


>gi|325569912|ref|ZP_08145906.1| ATP-dependent DNA helicase [Enterococcus casseliflavus ATCC 12755]
 gi|325157035|gb|EGC69203.1| ATP-dependent DNA helicase [Enterococcus casseliflavus ATCC 12755]
          Length = 345

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q    Q++     +   +   AGSGKT  L+QRV  LL  N
Sbjct: 206 QKAQNQIIRDTTNKFLLIEGIAGSGKTSALLQRVAFLLYRN 246


>gi|242781508|ref|XP_002479814.1| tRNA-splicing endonuclease, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218719961|gb|EED19380.1| tRNA-splicing endonuclease, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1391

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 7   FQEHS--ETIDLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           + E S    +D  +  +++      A D      +    GSGKT  +V  V  LL
Sbjct: 563 YNESSLKPLVDNYNVNQAQAKAIKSALDNDAFTLIQGPPGSGKTKTIVALVGALL 617


>gi|329664412|ref|NP_001192645.1| NFX1-type zinc finger-containing protein 1 [Bos taurus]
 gi|297482109|ref|XP_002692544.1| PREDICTED: regulator of nonsense transcripts 1-like [Bos taurus]
 gi|296480971|gb|DAA23086.1| regulator of nonsense transcripts 1-like [Bos taurus]
          Length = 1918

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPST-------LLCL 68
           +  ++ E L  +     A +    G+GKT++ L  ++++ LL N            +L +
Sbjct: 599 LDDSQMEALRFALTRELAIIQGPPGTGKTYVGL--KIVQALLTNEPVWQISIQKFPILVV 656

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
            +T  A  +    + +             ++EI K    +  ++     R+L + +    
Sbjct: 657 CYTNHALDQFLEGIYKCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPLHLRRAY 716

Query: 129 GGLKVQT 135
             + + T
Sbjct: 717 --MSIMT 721


>gi|77164437|ref|YP_342962.1| superfamily I DNA/RNA helicase [Nitrosococcus oceani ATCC 19707]
 gi|254433087|ref|ZP_05046595.1| hypothetical protein NOC27_18 [Nitrosococcus oceani AFC27]
 gi|76882751|gb|ABA57432.1| Superfamily I DNA and RNA helicases and helicase subunits-like
           protein [Nitrosococcus oceani ATCC 19707]
 gi|207089420|gb|EDZ66691.1| hypothetical protein NOC27_18 [Nitrosococcus oceani AFC27]
          Length = 1622

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query: 16  LISQTKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLAN 59
               +  EQ    D  RS     V    G+GK+H +   +  LL   
Sbjct: 383 FPKPSNDEQRRIIDKLRSANGVLVQGPPGTGKSHTIANLICHLLATG 429


>gi|41407782|ref|NP_960618.1| HrpA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396136|gb|AAS04001.1| HrpA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1314

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL    +  ++  +       V A   GSGKT  L        R +R  + +  P  L  
Sbjct: 71  DLPVSERRREIADAIRAHQVVVIAGETGSGKTTQLPKICLEAGRGIRGTIGHTQPRRLAA 130

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E+   +   +      +D++    + K+       +++ + R LL 
Sbjct: 131 RTVAQRIADELGSPLGGTVGYTVRFADQVSDRTLIKLMTDGILLAEIQRDRRLLR 185


>gi|295425735|ref|ZP_06818420.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
 gi|295064543|gb|EFG55466.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
          Length = 768

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           + +  +  + +     V   AGSGKT  ++QR+  LL
Sbjct: 217 REQNKIIRNTSADLLFVQGAAGSGKTSAILQRIAYLL 253


>gi|289621373|emb|CBI52156.1| unnamed protein product [Sordaria macrospora]
          Length = 712

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 10  HSETIDL-ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           + E +D  ++ ++ + +  A      A +    G+GKTH L++ +L+LL  +     +L 
Sbjct: 222 NIEWVDPTLNDSQKDAIRFALASREIALIHGPPGTGKTHTLIELILQLLRRDL---RILV 278


>gi|295402610|ref|ZP_06812557.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110974|ref|YP_003989290.1| hypothetical protein GY4MC1_1924 [Geobacillus sp. Y4.1MC1]
 gi|294975360|gb|EFG50991.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216075|gb|ADP74679.1| hypothetical protein GY4MC1_1924 [Geobacillus sp. Y4.1MC1]
          Length = 1461

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 12  ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           + +  +     ++L+A          V    G+GK+H +   +  LL        +L   
Sbjct: 353 DLLFPLPANNEQKLIARKLALNEGVVVQGPPGTGKSHTIANLICHLLAHG---KRVLV-- 407

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
                 +E   R L+++     + +EI S  ++ + G   +  ++  +   +   L+T
Sbjct: 408 -----TSE-KERALQVLRD--KIPEEIRSLCVSVLGGDSRSVKEIEDSIKSIAENLDT 457


>gi|91214700|ref|ZP_01251673.1| Ankyrin [Psychroflexus torquis ATCC 700755]
 gi|91187127|gb|EAS73497.1| Ankyrin [Psychroflexus torquis ATCC 700755]
          Length = 937

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
           + Y NS       +D        Q +         +  +AGSGKT  L    +++L    
Sbjct: 111 LSYINSKATSFNLLDKAISFDESQEIIFHKRPPVIIIGSAGSGKTA-LTLEKIKMLKG-- 167

Query: 61  HPSTLLCLT 69
               +L +T
Sbjct: 168 ---KILYIT 173


>gi|56758884|gb|AAW27582.1| SJCHGC09528 protein [Schistosoma japonicum]
          Length = 454

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 18/123 (14%)

Query: 36  VSANA--GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93
           V A A  GSGKT   +  +L+ L+    P   L +T T+    E++H++ E     + + 
Sbjct: 41  VVACAKTGSGKTAAFLIPILQSLMTELKPLYALIITPTR----ELAHQIGEQAAGLNLIQ 96

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ--FPLEA 151
            E L   +    G+      +  AR   I I+ TPG L           +++      EA
Sbjct: 97  GEPLCNVLVITGGRSIIHQSIDLARSPHI-IVSTPGRL---------ADLLRTQIAAQEA 146

Query: 152 NIT 154
           N+T
Sbjct: 147 NVT 149


>gi|118577232|ref|YP_899472.1| superfamily I DNA/RNA helicase-like protein [Pelobacter
          propionicus DSM 2379]
 gi|118504737|gb|ABL01219.1| Superfamily I DNA and RNA helicases-like protein [Pelobacter
          propionicus DSM 2379]
          Length = 513

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 18 SQTKSEQLLAS-----DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
          + T+ +Q   +      P  + +++A AG+ KT  LV     ++      S +L L   K
Sbjct: 15 TPTQEQQDTINKAVSMSPAETLFITAFAGAAKTSTLV-----MIAEAVATSKMLYLAFNK 69

Query: 73 AAAAEMSHR 81
          A   E   R
Sbjct: 70 AIVNEAQKR 78


>gi|66815979|ref|XP_642006.1| DNA helicase [Dictyostelium discoideum AX4]
 gi|60470155|gb|EAL68135.1| DNA helicase [Dictyostelium discoideum AX4]
          Length = 669

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 10/63 (15%)

Query: 3   YHNSFQEHSETIDLISQ-------TKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRV 52
           + N   ++S+ +D  +        T  +Q +     D  ++ + + +AG+GK+ +L   V
Sbjct: 218 FENIENDNSDNVDSQNLLELDELLTSEQQKIVNLIVDGGKNVFFTGSAGTGKSFVLKHLV 277

Query: 53  LRL 55
            +L
Sbjct: 278 SKL 280


>gi|330812324|ref|YP_004356786.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
          Length = 622

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 12 ETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS------ 63
          E       T  +Q    A    R   V+A  G+GKT      +L  L  N HP       
Sbjct: 17 EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHG 76

Query: 64 ----TLLCLTHTKAAAAEMSH 80
               +L LT T+  AA++  
Sbjct: 77 PRQPRVLVLTPTRELAAQVHE 97


>gi|307331135|ref|ZP_07610262.1| putative helicase [Streptomyces violaceusniger Tu 4113]
 gi|306883215|gb|EFN14274.1| putative helicase [Streptomyces violaceusniger Tu 4113]
          Length = 846

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 15  DLISQTKSEQ-LLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCL 68
           D+++  ++EQ  +   P  S   V    G+GKT + + R   LL  +       +L +
Sbjct: 231 DIVASIQAEQDQVIRAPAASITEVEGGPGTGKTAVALHRAAYLLYQDRRRYAGGILVV 288


>gi|282878398|ref|ZP_06287186.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
 gi|281299476|gb|EFA91857.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
          Length = 1143

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 12/127 (9%)

Query: 10  HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCL 68
           H +  D++ + K  Q           +    G+GKT  +  R + +L    +P   +L +
Sbjct: 695 HPDYDDVVLKAKQAQDY-------FLLVGPPGTGKTS-MALRYM-VLEELENPDANILLM 745

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
            +T  A  E+   + E    +  L +E       K         D  K   L        
Sbjct: 746 AYTNRAVDEICDMLCEEGLDFIRLGNEYSCDPRFKSHLLGQAIDDHPKLNDLRQRF--AG 803

Query: 129 GGLKVQT 135
             L V T
Sbjct: 804 MRLIVST 810


>gi|312199530|ref|YP_004019591.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311230866|gb|ADP83721.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 863

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSAWVS-ANAGSGKTHILVQRVLRLL 56
           D+I+  ++EQ  +     RS  V     G+GKT + + R   LL
Sbjct: 189 DIIATLQAEQDRIIRADARSVLVVDGGPGTGKTAVALHRAAYLL 232


>gi|323340607|ref|ZP_08080860.1| ATP-dependent DNA helicase [Lactobacillus ruminis ATCC 25644]
 gi|323091980|gb|EFZ34599.1| ATP-dependent DNA helicase [Lactobacillus ruminis ATCC 25644]
          Length = 766

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D       V   AGSGKT  ++QRV  LL
Sbjct: 212 KEQNKIIRDTKSDLLFVQGAAGSGKTSAVLQRVAYLL 248


>gi|261341381|ref|ZP_05969239.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
 gi|288316692|gb|EFC55630.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 80/235 (34%), Gaps = 31/235 (13%)

Query: 16  LISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPSTLLC 67
            +  T  +Q    A    R    SA  G+GKT      +L LL+          P   L 
Sbjct: 21  YVEPTPIQQKAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELLVKNQPHAKGRRPVRALI 80

Query: 68  LTHTKAAAAEMSHRVLEI-----ITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLL 121
           LT T+  AA++   V +      I +        ++ ++ K++ G     +   +   L 
Sbjct: 81  LTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLE 140

Query: 122 ITILETPGGLKVQTIH--------AFCEAIMQQFPLEANITSH-----FAIADEEQSKKL 168
                    +++  +          F   I +   + A + +      F+    ++ K L
Sbjct: 141 HQNAVKLDQIEILVLDEADRMLDMGFIHDIRR---VLAKLPARRQNLLFSATFSDEIKAL 197

Query: 169 IEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFF 223
            E+   + L   +   N    +   + +   + +    L+S +I      +++ F
Sbjct: 198 AEKLLHNPLEVEVARRNTA-SEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVF 251


>gi|329924427|ref|ZP_08279527.1| putative helicase IV [Paenibacillus sp. HGF5]
 gi|328940679|gb|EGG36997.1| putative helicase IV [Paenibacillus sp. HGF5]
          Length = 688

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           S     +  ++++  + EQ     ++      +   AGSGKT + + RV  LL  +  
Sbjct: 189 SSTSDEKMKNIVATIQQEQNAIIRNETAHELIIQGAAGSGKTSVALHRVAFLLYRHKE 246


>gi|86739665|ref|YP_480065.1| putative helicase [Frankia sp. CcI3]
 gi|86566527|gb|ABD10336.1| putative helicase [Frankia sp. CcI3]
          Length = 829

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+I+  ++EQ        +    V    G+GKT + + R   LL
Sbjct: 189 DIIATLQAEQDRIIRARANGVLVVDGGPGTGKTAVALHRAAYLL 232


>gi|15642780|ref|NP_227821.1| DNA helicase, putative [Thermotoga maritima MSB8]
 gi|4980488|gb|AAD35099.1|AE001689_5 DNA helicase, putative [Thermotoga maritima MSB8]
          Length = 650

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 6   SFQEHSETID-LISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPS 63
           SF+E     D  +++++ E +  +  +   ++     G+GKT  LV+ + + +       
Sbjct: 159 SFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARG---K 215

Query: 64  TLLCLTHTKAAAAEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
            +L    +  A   +  R+     L  I   S +S  +  + +            + K +
Sbjct: 216 KILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMK 275

Query: 119 HLLITILETPGGLK 132
             L  +++      
Sbjct: 276 EELAKLIKKRDSFT 289


>gi|324998678|ref|ZP_08119790.1| putative helicase [Pseudonocardia sp. P1]
          Length = 748

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 11  SETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
           S+  D+++  ++EQ          +A +    G+GKT + + RV  LL A+  
Sbjct: 179 SQMRDIVTTIQAEQDEIIRLPLAGTAVIEGGPGTGKTAVALHRVAYLLYAHRD 231


>gi|326632993|ref|YP_004306582.1| putative replication origin binding protein [Enterobacteria phage
           SPC35]
 gi|321272187|gb|ADW80079.1| putative replication origin binding protein [Enterobacteria phage
           SPC35]
          Length = 995

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +V A+ G+GKT      V+R L +       L +T+T+A
Sbjct: 462 FVKASLGTGKTTA----VVRWLDSGVIKGNFLAITNTRA 496


>gi|304386270|ref|ZP_07368603.1| ATP-dependent DNA helicase [Pediococcus acidilactici DSM 20284]
 gi|304327627|gb|EFL94854.1| ATP-dependent DNA helicase [Pediococcus acidilactici DSM 20284]
          Length = 765

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++ +      +V   AGSGKT  ++QRV  LL
Sbjct: 211 QREQNQIIRNTSADLLFVQGAAGSGKTAAILQRVAFLL 248


>gi|149277821|ref|ZP_01883961.1| putative lipoprotein [Pedobacter sp. BAL39]
 gi|149231509|gb|EDM36888.1| putative lipoprotein [Pedobacter sp. BAL39]
          Length = 442

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 44  KTHILVQRVLRLLLANAHPSTLLCLT---------HTKAAAAEMSHRVLEIITAWSHLSD 94
           KT  + +   ++L        LL +T          TK AAA ++ RV E    W++   
Sbjct: 174 KTATVAEVYAQILADIEAGRQLLNVTNFDAGFNYRFTKRAAAALTARVYEFKGDWANALA 233

Query: 95  EILSA 99
               A
Sbjct: 234 SSQQA 238


>gi|145301275|ref|YP_001144115.1| putative DNA helicase [Aeromonas salmonicida subsp. salmonicida
          A449]
 gi|142856052|gb|ABO92367.1| putative DNA helicase [Aeromonas salmonicida subsp. salmonicida
          A449]
          Length = 501

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 9/48 (18%)

Query: 17 ISQTKSEQLLASDPTRSAWVS-ANAGSGKTHILVQ--------RVLRL 55
          +     EQ L +    S  V  A AG+GKT  LV+        R+L +
Sbjct: 4  LPPDTPEQALITQYKGSLLVVRAYAGTGKTTTLVKYAHNNLNSRILYI 51


>gi|159037334|ref|YP_001536587.1| ATP-dependent helicase HrpA [Salinispora arenicola CNS-205]
 gi|157916169|gb|ABV97596.1| ATP-dependent helicase HrpA [Salinispora arenicola CNS-205]
          Length = 1339

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 7/108 (6%)

Query: 20  TKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLCLTHTK 72
            + E + A+       + A   GSGKT  L        R +  L+ +  P  L   T   
Sbjct: 85  DRREDIAAAIREHQVVIVAGETGSGKTTQLPKICLEQGRGVHGLIGHTQPRRLAARTVAD 144

Query: 73  AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             A E+   + +++      +D++    + K+       +++   R L
Sbjct: 145 RIAEELGTELGDVVGYQVRFADQVSDRSLVKLMTDGILLAELQTDRML 192


>gi|119944859|ref|YP_942539.1| ATP-dependent helicase HrpA [Psychromonas ingrahamii 37]
 gi|119863463|gb|ABM02940.1| ATP-dependent helicase HrpA [Psychromonas ingrahamii 37]
          Length = 1296

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPS 63
           S   +L    K + +LA+       + A   GSGKT  + +  L L      L+ +  P 
Sbjct: 68  SYPPNLPVSQKKDDILATIRDNQVVIIAGETGSGKTTQIPKICLELGRGVSGLIGHTQPR 127

Query: 64  TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            +   T     A E+   V E +      +D++      K+       +++   R L
Sbjct: 128 RIAARTVANRIAEELDSIVGETVGYRVRFTDKVSERSYIKLMTDGILLAEIQNDRFL 184


>gi|270290750|ref|ZP_06196974.1| I DNA/RNA helicase [Pediococcus acidilactici 7_4]
 gi|270280810|gb|EFA26644.1| I DNA/RNA helicase [Pediococcus acidilactici 7_4]
          Length = 765

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++ +      +V   AGSGKT  ++QRV  LL
Sbjct: 211 QREQNQIIRNTSADLLFVQGAAGSGKTAAILQRVAFLL 248


>gi|229005270|ref|ZP_04162986.1| UvrD/Rep helicase [Bacillus mycoides Rock1-4]
 gi|228755982|gb|EEM05311.1| UvrD/Rep helicase [Bacillus mycoides Rock1-4]
          Length = 698

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAEKNMPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|119467162|ref|XP_001257387.1| tRNA-splicing endonuclease, putative [Neosartorya fischeri NRRL 181]
 gi|119405539|gb|EAW15490.1| tRNA-splicing endonuclease, putative [Neosartorya fischeri NRRL 181]
          Length = 2076

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 30/165 (18%)

Query: 2    IYHNSFQEHSETIDLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLL-- 56
            I H S        D  +   ++      A D      +    GSGKT  +V  V  LL  
Sbjct: 1276 ILHYSDASLKPIADNYNVNPAQAKAIKSALDNDAFTLIQGPPGSGKTKTIVALVGALLSN 1335

Query: 57   ------------LANAHPS---------TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
                        +  A+P           LL    + AA  E+  R  E +       ++
Sbjct: 1336 VLGDQGVTISRPMGVANPRVPVRTTTSKKLLVCAPSNAAVDELVMRFKEGVKTIHGRHEK 1395

Query: 96   ILSAEITKIQGKKPNKSDMSKARHLLITILETP----GGLKVQTI 136
            +    + +      N  D++    +   + + P    G   +QTI
Sbjct: 1396 LNVIRLGRSDAINTNVLDVTLDELVNARLSQNPRKDSGQRDLQTI 1440


>gi|57505918|ref|ZP_00371842.1| F-box DNA helicase 1 [Campylobacter upsaliensis RM3195]
 gi|57015718|gb|EAL52508.1| F-box DNA helicase 1 [Campylobacter upsaliensis RM3195]
          Length = 487

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 21/144 (14%)

Query: 17  ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +S T  +Q +          V+A AG+GKT  L+Q              +L L++     
Sbjct: 1   MSLTPEQQAVVDFNIEDILIVNAYAGTGKTSTLIQ-----FCEARKHKKILYLSYN---- 51

Query: 76  AEMSHRVLEIITAWSHLSDEIL-SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134
           A M           S++  + + S    ++  K  ++    +A  L   + +        
Sbjct: 52  ASMRKEAQAKFKHLSNVEVKTMHSLAYEELGLKYKDRLGSLRAMDLFPFVKDLQEE---- 107

Query: 135 TIHAFCE----AIMQQFPLEANIT 154
             H+F        ++ F     + 
Sbjct: 108 -FHSFYATAILKTLRTFC-NVGLP 129


>gi|321454433|gb|EFX65604.1| hypothetical protein DAPPUDRAFT_117124 [Daphnia pulex]
          Length = 404

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---- 56
           ++ +N+     +   + S TK+    ++   + A +  + G+GK+ ++V+ ++R++    
Sbjct: 87  LLENNTALNSGQLKAVHSITKTMVHASTKTPKIALLQGSPGTGKSRVIVELIIRMMSMHL 146

Query: 57  -LANAHPSTLLCLTHTKAAAAEMSHRVL 83
                +P  +L       A  E+S+R+L
Sbjct: 147 EKTGRYPC-ILVCAPLNNAVDEISNRLL 173


>gi|311030272|ref|ZP_07708362.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 510

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 13/137 (9%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVLRLLLANAHPST 64
                +++ + + T  ++           V A A  G+GKT   V  +L  +  N   + 
Sbjct: 13  VNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPILEKVDVNNPETQ 72

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
            L LT T+    E++H++ + I       D++   ++  + G +   S + K +     I
Sbjct: 73  ALILTPTR----ELAHQITKEIKNLKENIDDL---QVLAVYGGQDVNSQLKKLKGAQHVI 125

Query: 125 LETPGGL----KVQTIH 137
           + TPG L    +  TI 
Sbjct: 126 VATPGRLLDHVRRGTID 142


>gi|307109973|gb|EFN58210.1| hypothetical protein CHLNCDRAFT_142077 [Chlorella variabilis]
          Length = 442

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64
           ++ Q H   I   + ++ E + A+       +    G+GKTH +   +L  L      + 
Sbjct: 59  DAKQLHPACIATCNDSQCEAIQAAAAQPLTLIHGPPGTGKTHTIAH-LLENLFQKRQETP 117

Query: 65  LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
           +L    T  A   +   + ++++     S +     + ++        D+ +        
Sbjct: 118 VLVTAGTNVAVDNI---LRKLLSCLGAASSQAQPGRLLRVGDAGNVGKDLQRYCLEAQEG 174

Query: 125 LETPGGLK 132
           L +P G  
Sbjct: 175 LRSPYGFD 182


>gi|301300695|ref|ZP_07206881.1| putative Helicase IV [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851700|gb|EFK79398.1| putative Helicase IV [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 763

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D       V   AGSGKT  ++QRV  LL
Sbjct: 211 KEQNKIIRDTKSDLLFVQGAAGSGKTSAVLQRVAYLL 247


>gi|291299659|ref|YP_003510937.1| superfamily I DNA and RNA helicase-like protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568879|gb|ADD41844.1| Superfamily I DNA and RNA helicase-like protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 746

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRS-AWVSAN-AGSGKTHILVQRVLRLLLANAH 61
            +   +  D+++  +SEQ            V A   G+GKT + + R   LL  +A 
Sbjct: 173 AERTGKMRDIVATIQSEQDAIIRSELDGILVVAGGPGTGKTAVALHRAAYLLYEHAE 229


>gi|227891580|ref|ZP_04009385.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866727|gb|EEJ74148.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 763

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D       V   AGSGKT  ++QRV  LL
Sbjct: 211 KEQNKIIRDTKSDLLFVQGAAGSGKTSAVLQRVAYLL 247


>gi|126438139|ref|YP_001073830.1| ATP-dependent helicase HrpA [Mycobacterium sp. JLS]
 gi|126237939|gb|ABO01340.1| ATP-dependent helicase HrpA [Mycobacterium sp. JLS]
          Length = 1307

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL    + +++  +       V A   GSGKT  L      + R +R  + +  P  L  
Sbjct: 59  DLPVSDRRDEIARAIAGNQVVVVAGETGSGKTTQLPKICLELGRGIRGTIGHTQPRRLAA 118

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E+   + + +      +D+     + K+       +++ + R LL 
Sbjct: 119 RTVAQRIADELDTPIGDAVGYTVRFTDQASDRTLVKLMTDGILLAEIQRDRRLLR 173


>gi|119026129|ref|YP_909974.1| hypothetical protein BAD_1111 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765713|dbj|BAF39892.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 765

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +  D+++  + EQ     +D  ++  V    G+GKT + + R   LL
Sbjct: 177 KMTDIVATIQGEQDRIIRADLNQAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|329936535|ref|ZP_08286271.1| putative helicase protein [Streptomyces griseoaurantiacus M045]
 gi|329304050|gb|EGG47932.1| putative helicase protein [Streptomyces griseoaurantiacus M045]
          Length = 766

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D++S  ++EQ L+   P  S  +V    G+GKT + + R   LL
Sbjct: 225 DIVSSIQAEQDLVIRAPAASVTYVEGGPGTGKTAVALHRAAYLL 268


>gi|254497255|ref|ZP_05110063.1| LvhB11 [Legionella drancourtii LLAP12]
 gi|254353483|gb|EET12210.1| LvhB11 [Legionella drancourtii LLAP12]
          Length = 320

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 27  ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68
           A    R+  V    GSGKT  LV  ++  ++ +A    +  +
Sbjct: 144 AVSSHRNILVIGGTGSGKT-TLVNAIINEMVIHASEERIFII 184


>gi|239981411|ref|ZP_04703935.1| putative ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 716

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ        S    V    G+GKT + + RV  LL
Sbjct: 207 DIVATIQPEQDEIVRSGLSGTVCVQGGPGTGKTAVGLHRVAYLL 250


>gi|229085590|ref|ZP_04217825.1| UvrD/Rep helicase [Bacillus cereus Rock3-44]
 gi|228697738|gb|EEL50488.1| UvrD/Rep helicase [Bacillus cereus Rock3-44]
          Length = 698

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MIYHNSFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
           ++Y     + ++  D++S  +SEQ  ++ ++      +   AGSGKT I + R+  L+  
Sbjct: 163 LLYRLGENKDNKLKDIVSTIQSEQNDIIRAEKNMPLLIQGVAGSGKTTIALHRLAFLIYE 222


>gi|297202474|ref|ZP_06919871.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197709999|gb|EDY54033.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 750

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 15  DLISQTKSEQ-LLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           D++   ++EQ  +   P R   V     G+GKT + + R   LL  +     LL 
Sbjct: 183 DIVQTIQAEQDEIIRAPHRGVLVVEGGPGTGKTAVALHRAAYLLYEH---RELLA 234


>gi|154488903|ref|ZP_02029752.1| hypothetical protein BIFADO_02212 [Bifidobacterium adolescentis
           L2-32]
 gi|154083040|gb|EDN82085.1| hypothetical protein BIFADO_02212 [Bifidobacterium adolescentis
           L2-32]
          Length = 759

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           +  D+++  + EQ     +D  ++  V    G+GKT + + R   LL
Sbjct: 177 KMTDIVATIQGEQDRIIRADLNQAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|56964255|ref|YP_175986.1| ATP-dependent DNA helicase [Bacillus clausii KSM-K16]
 gi|56910498|dbj|BAD65025.1| ATP-dependent DNA helicase [Bacillus clausii KSM-K16]
          Length = 766

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
              + +TI    Q +  Q +  + +R   +   AGSGKT + +QR   LL  +
Sbjct: 195 ASRYMKTIVSTIQKEQNQAIRDEKSRYLVIQGVAGSGKTSVAMQRAAYLLFRH 247


>gi|326668922|ref|XP_003198895.1| PREDICTED: peroxisomal proliferator-activated receptor
           A-interacting complex 285 kDa protein-like [Danio rerio]
          Length = 2464

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 27/191 (14%)

Query: 5   NSFQEHSETIDLISQTKSEQLL------ASDPTRSA---WVSANAGSGKTHILVQRVLRL 55
           N+    S   D     + +Q         SD   S     +    G+GKT  L + + + 
Sbjct: 408 NAHLSISFQSDEGEFNEKQQAAMDFVLGVSDNRSSIPPLLIYGPFGTGKTRTLAK-MAQA 466

Query: 56  LLANAHPSTLLCLTHTKAAA-----AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN 110
           L+   H + +L  THT ++A     A     V         L  + +  ++         
Sbjct: 467 LVQQPH-NKILICTHTNSSADLYIKAHFHEYVRNGQLHARPLRIKAMEIKLASTDFITLQ 525

Query: 111 KSDMSKARHLL---ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF--AIADEEQS 165
              +S+  +        +     + + T      ++ + F  +  +  ++   I  +E S
Sbjct: 526 YCHLSREANCFEFPDKAVLDSTRIVITT-----TSLAR-FFNDMKLPENYFSHILIDEAS 579

Query: 166 KKLIEEAKKST 176
           + L  EA  + 
Sbjct: 580 QMLECEALMAL 590


>gi|256421203|ref|YP_003121856.1| DNA helicase [Chitinophaga pinensis DSM 2588]
 gi|256036111|gb|ACU59655.1| putative DNA helicase [Chitinophaga pinensis DSM 2588]
          Length = 518

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72
              EQ           + A AG+GKT  L++       A A P  ++L L   K
Sbjct: 2  NLTQEQAAIIKSKGDIRIIAVAGAGKTTTLIE------YAKARPDKSILYLAFNK 50


>gi|226315295|ref|YP_002775191.1| hypothetical protein BBR47_57100 [Brevibacillus brevis NBRC 100599]
 gi|226098245|dbj|BAH46687.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 832

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 78  MSHRV---------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
           M+ RV         L+ I  WS    + +   +      +      ++ R  L   +   
Sbjct: 461 MTERVSAVTSLDQMLKEIRFWSETEPQAIRNAVFIATTTEKVLRLFARERQKLAAAI--- 517

Query: 129 GGLKVQTIHAFCEAI--MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA----SIML 182
                 TIH F E I   + +  E          DE   K L++     TL+     +++
Sbjct: 518 ------TIHQFFENIDGARGYADEL--------LDELD-KSLMKLVALDTLSKDDFQVLI 562

Query: 183 DNNEELKKAFYEILEISNDEDIETL--ISDIISNRTALKLIFFFFSYLWRRKIIE 235
              EE  ++F+  L++ +    E L  ++ +   R+      FF    W R+ I 
Sbjct: 563 ALLEEKPQSFFGTLDMESRHKQEMLMNLAKLHEERSTQHPAEFFRK--WDREAIS 615


>gi|158300801|ref|XP_320633.4| AGAP011893-PA [Anopheles gambiae str. PEST]
 gi|157013336|gb|EAA00145.5| AGAP011893-PA [Anopheles gambiae str. PEST]
          Length = 607

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87
             G+GKT  +V+ VL+ +      S +L    +  A  E++ R+L+ +T
Sbjct: 234 PPGTGKTCTIVEAVLQ-IWKMRPKSRILVTATSNYACNELAKRLLKYVT 281


>gi|116073018|ref|ZP_01470280.1| probable exodeoxyribonuclease V, alpha subunit RecD [Synechococcus
           sp. RS9916]
 gi|116068323|gb|EAU74075.1| probable exodeoxyribonuclease V, alpha subunit RecD [Synechococcus
           sp. RS9916]
          Length = 549

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            +   +++ +LA    R   ++   G+GKT  +VQ +   L  N      L    T  AA
Sbjct: 147 GLDTQQTQAVLALLQHRLVLLTGGPGTGKTSTVVQMLAAALTCNPAIQIQLAAP-TGKAA 205

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           A    R+ + +++ S+         ++ +     ++   ++ ++    
Sbjct: 206 A----RLQQAVSSGSNALGSDAMHHLSSLPSSTLHRLLEAQGKNRYRR 249


>gi|258509614|ref|YP_003172365.1| DNA helicase [Lactobacillus rhamnosus GG]
 gi|257149541|emb|CAR88514.1| DNA helicase [Lactobacillus rhamnosus GG]
 gi|259650880|dbj|BAI43042.1| putative DNA helicase [Lactobacillus rhamnosus GG]
          Length = 762

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ  +  D +    V    AGSGKT  ++QRV  LL
Sbjct: 196 QSDEYMKNIVATIQREQNDIIRDTSSDLLVVQGVAGSGKTSAVLQRVAYLL 246


>gi|205352675|ref|YP_002226476.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272456|emb|CAR37345.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627742|gb|EGE34085.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 1300

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 47/217 (21%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHIL------VQRVLRLLLANAHPSTLLCLTH 70
           +SQ K + L A    +   V+   GSGKT  L      + R ++ L+ +  P  L   T 
Sbjct: 79  VSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTV 138

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL---------- 120
               A E+       I      SD + S  + K+       +++ + R L          
Sbjct: 139 ANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDE 198

Query: 121 --------------LITILETPGGLKV----QTIH------AFCEAIM-----QQFPLEA 151
                         L  +L     LKV     TI        F  A++     + +P+E 
Sbjct: 199 AHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHFNNALIIEVSGRTYPVEV 258

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188
                   AD+ +  +L  +A    +  +  ++  ++
Sbjct: 259 RYRPIVEEADDTERDQL--QAIFDAVDELGRESPGDI 293


>gi|187777307|ref|ZP_02993780.1| hypothetical protein CLOSPO_00859 [Clostridium sporogenes ATCC
           15579]
 gi|187774235|gb|EDU38037.1| hypothetical protein CLOSPO_00859 [Clostridium sporogenes ATCC
           15579]
          Length = 1350

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLA 58
           I+ N ++E  + I    +   EQ+  +       +  V    G+GK+H +   +   L  
Sbjct: 248 IHKNQWKECKDDILFPLEANEEQISIAKKICENEAILVQGPPGTGKSHTIANLICHFLAH 307

Query: 59  NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITK 103
                 +L  + T  A   + +++ E I     + L D     E+ +
Sbjct: 308 G---KKVLVTSETSRALRVLINKIPEDIKPLCVNLLDDSNGEYELEQ 351


>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 432

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 33/206 (16%)

Query: 2   IYHNSFQEHSETIDLISQ------TKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVL 53
           +   SF    E +  IS+      T  +Q       R   V A+A  G+GKT      +L
Sbjct: 1   MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 54  RLLLA-----NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108
           + +L          +  L LT T+    E++ ++ + I  ++    + L  ++  + G  
Sbjct: 61  QKMLDNPSTTGRSNARALILTPTR----ELAAQIADNINDYA----KYLDLKVVTVYGGV 112

Query: 109 PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168
              S  +K +     I+ TPG L         E I+      +N+   F + DE    ++
Sbjct: 113 KMDSQATKLKRGADIIIATPGRLL--------EHIIACNLSLSNVD--FLVLDEAD--RM 160

Query: 169 IEEAKKSTLASIMLDNNEELKKAFYE 194
           ++    + +  I+   N++ +   + 
Sbjct: 161 LDMGFSADIQKILQAVNKKRQNLLFS 186


>gi|90962349|ref|YP_536265.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
 gi|90821543|gb|ABE00182.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
          Length = 763

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D       V   AGSGKT  ++QRV  LL
Sbjct: 211 KEQNKIIRDTKSDLLFVQGAAGSGKTSAVLQRVAYLL 247


>gi|320169144|gb|EFW46043.1| aquarius [Capsaspora owczarzaki ATCC 30864]
          Length = 1663

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 9/119 (7%)

Query: 21   KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
            + E + A        V    G+GKT + VQ V      N     +L +TH+  A  ++  
Sbjct: 912  QVEAIRAGVQPGLTLVVGPPGTGKTDVAVQIVSNW-YHNFPDQRILLVTHSNQALNQIFE 970

Query: 81   RVLEI------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
            +++E+      +    H  +E+ + +     G+      + +   LL  +      L V
Sbjct: 971  KIMELDIDERHLLRLGHGEEELATTKDFSRSGRV--NYILERRIALLQEVARLAASLDV 1027


>gi|320353713|ref|YP_004195052.1| ATP-dependent helicase HrpA [Desulfobulbus propionicus DSM 2032]
 gi|320122215|gb|ADW17761.1| ATP-dependent helicase HrpA [Desulfobulbus propionicus DSM 2032]
          Length = 1262

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRL 55
           Y ++F + S   +L    + E ++A+       +     GSGKT  L        R    
Sbjct: 13  YFHNFMQLSYPPELPVSEQRESIVAAIREHQVLIIIGDTGSGKTTQLPKMCIEADRGATG 72

Query: 56  LLANAHPSTLLCLTHTKAAAAEMS--HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113
           ++    P  +  L+     A E+    RV   I      S E L   +T        + D
Sbjct: 73  MIGCTQPRRIAALSVADRVAEELRAPDRVGYKIRFHDQTSKETLIKFMTDGVLLAETRQD 132

Query: 114 MSKAR 118
              A+
Sbjct: 133 PQLAQ 137


>gi|301321550|gb|ADK68940.1| ATPases with chaperone activity, ATP-binding subunit [Gordonia
          sp. KTR9]
          Length = 597

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)

Query: 19 QTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQ 50
          + + +Q+LAS       +  + A AGSGKT +LVQ
Sbjct: 37 ENERQQVLASLARPRLSNILLLAPAGSGKT-VLVQ 70


>gi|251777891|ref|ZP_04820811.1| putative helicase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082206|gb|EES48096.1| putative helicase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 761

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 12  ETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLL 66
           +  +++S  + EQ             V  +AGSGKT I + R+  L+     +     +L
Sbjct: 192 KLKEVVSTIQKEQNEIIRWPKNFPIIVQGSAGSGKTTIALHRLAYLIYRYKDSMKGDDIL 251

Query: 67  CL 68
            L
Sbjct: 252 VL 253


>gi|229817309|ref|ZP_04447591.1| hypothetical protein BIFANG_02570 [Bifidobacterium angulatum DSM
           20098]
 gi|229785098|gb|EEP21212.1| hypothetical protein BIFANG_02570 [Bifidobacterium angulatum DSM
           20098]
          Length = 759

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLL 56
           S +   +  D+++  + EQ         R+  V    G+GKT + + R   LL
Sbjct: 171 SSRRTGKMTDIVATIQGEQDAIIRSPLNRAVVVQGGPGTGKTAVALHRAAYLL 223


>gi|187932513|ref|YP_001887038.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium botulinum
           B str. Eklund 17B]
 gi|187720666|gb|ACD21887.1| putative helicase [Clostridium botulinum B str. Eklund 17B]
          Length = 761

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 12  ETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLL 66
           +  +++S  + EQ             V  +AGSGKT I + R+  L+     +     +L
Sbjct: 192 KLKEVVSTIQKEQNEIIRWPKNFPIIVQGSAGSGKTTIALHRLAYLIYRYKDSMKGDDIL 251

Query: 67  CL 68
            L
Sbjct: 252 VL 253


>gi|323451631|gb|EGB07507.1| hypothetical protein AURANDRAFT_64586 [Aureococcus anophagefferens]
          Length = 1181

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 15/103 (14%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE--------- 84
             V    G+GKT  +V+ + R          +L    +  A   +  RV           
Sbjct: 298 FLVHGPPGTGKTTTVVEVIARAAAKG---QRVLACAASNVAVDNLLERVAAAFRAAKSPR 354

Query: 85  ---IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124
               +   + LS+      + ++         +  AR  L  +
Sbjct: 355 GLLRLGHPARLSEAASRYSMEEVLRTADGADVLEDARAELRNL 397


>gi|297193647|ref|ZP_06911045.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151854|gb|EDY65712.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 686

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ        S    V    G+GKT + + RV  LL
Sbjct: 192 DIVATIQPEQDEIVRSGLSGTVCVQGGPGTGKTAVGLHRVAYLL 235


>gi|188588883|ref|YP_001921959.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499164|gb|ACD52300.1| putative helicase [Clostridium botulinum E3 str. Alaska E43]
          Length = 761

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 12  ETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLL 66
           +  +++S  + EQ             V  +AGSGKT I + R+  L+     +     +L
Sbjct: 192 KLKEVVSTIQKEQNEIIRWPKNFPIIVQGSAGSGKTTIALHRLAYLIYRYKDSMKGDDIL 251

Query: 67  CL 68
            L
Sbjct: 252 VL 253


>gi|158317333|ref|YP_001509841.1| putative helicase [Frankia sp. EAN1pec]
 gi|158112738|gb|ABW14935.1| putative helicase [Frankia sp. EAN1pec]
          Length = 874

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAH 61
           D++S  ++EQ        +    V    G+GKT + + R   LL  +  
Sbjct: 202 DIVSTLQAEQDRIIRAAANAVLVVDGGPGTGKTAVALHRAAYLLYTDRD 250


>gi|115433256|ref|XP_001216765.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114189617|gb|EAU31317.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 701

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTL 65
           ++ ++ E +  A      A +    G+GKTH L++ +++L+          PS +
Sbjct: 225 LNDSQKEAIRFALAAPDVALIHGPPGTGKTHTLIELIVQLVRRGQRVLVCGPSNI 279


>gi|20093510|ref|NP_613357.1| superfamily I DNA/RNA helicase [Methanopyrus kandleri AV19]
 gi|19886342|gb|AAM01287.1| Superfamily I DNA/RNA helicase [Methanopyrus kandleri AV19]
          Length = 698

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++ ++ E +  A        +    G+GKT  + + +++ +      + +L    +  AA
Sbjct: 189 LNYSQREAVEHALGAPDFFLIHGPPGTGKTRTITEVIVQEVRRG---NKVLATAESNVAA 245

Query: 76  AEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
             +   ++E       +   + +S ++    ++ I    P      + R     ++E   
Sbjct: 246 DNILEYLVERGVEAVRVGHPARVSKKLKERTLSAIVENHPLYRKAERLRERAYRLIEKRD 305

Query: 130 GLK 132
             +
Sbjct: 306 RYQ 308


>gi|302546253|ref|ZP_07298595.1| ATP-dependent helicase HrpB [Streptomyces hygroscopicus ATCC
          53653]
 gi|302463871|gb|EFL26964.1| ATP-dependent helicase HrpB [Streptomyces himastatinicus ATCC
          53653]
          Length = 645

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLC 67
          E L A D   SA + A  G+GKT  LV  VL  LL         +L 
Sbjct: 17 ELLRALDLRGSAVLCAPPGTGKT-TLVPLVLAGLLDGGGTPVQRILV 62


>gi|294341648|emb|CAZ90067.1| putative DNA / RNA helicase [Thiomonas sp. 3As]
          Length = 383

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 18 SQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
          ++  ++Q+      P     +    GSGKT++L+ R   +  A      +L +T+T A A
Sbjct: 10 NELDADQIAFIQLPPHGRYALIGPPGSGKTNLLLLRAQYI--AGTGEKNVLVITYTNALA 67


>gi|226312891|ref|YP_002772785.1| hypothetical protein BBR47_33040 [Brevibacillus brevis NBRC 100599]
 gi|226095839|dbj|BAH44281.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 749

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 9   EHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
             S   D+++  +SEQ  ++ ++  R   V   AGSGKT I + R+  L+
Sbjct: 184 NDSRLKDIVATIQSEQNDIIRAEKERPIVVQGVAGSGKTTIALHRLSYLI 233


>gi|159899994|ref|YP_001546241.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159893033|gb|ABX06113.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
          [Herpetosiphon aurantiacus ATCC 23779]
          Length = 877

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 30 PTRSAWVSANAGSGKTHILV------QRVLRLLLANAHPSTL 65
            R + ++A+AGSGKT +L       QRV  L L +     +
Sbjct: 35 RGRVSLITASAGSGKTTLLSSLANARQRVAWLTLDSNDNDAI 76


>gi|86140588|ref|ZP_01059147.1| Superfamily I DNA helicase [Leeuwenhoekiella blandensis MED217]
 gi|85832530|gb|EAQ50979.1| Superfamily I DNA helicase [Leeuwenhoekiella blandensis MED217]
          Length = 1404

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 87/256 (33%), Gaps = 35/256 (13%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLANA 60
            N+ Q+ S  +        EQ    D     R   V+   G+GK+H +V  +  LL    
Sbjct: 352 LNAEQDFS--VFFPLPYNKEQKQIYDNYLKNRITVVTGPPGTGKSHTIVNILCSLLAQG- 408

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
               +L    T  A   +  ++ +          ++   +      K  N          
Sbjct: 409 --KRVLVTAQTDKALESLLDKIPQNFDDLVFTKIQLEVDKTRFSLEKSINNIRSILIDDF 466

Query: 121 LITILETPGGLKV---------QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171
            + I +    L +           IH     ++++   E ++   F    + +S KL ++
Sbjct: 467 HLNIEKKISNLNILKGEYLQYKSEIH----KVLEKEYNEVSLNESFK---DLRSYKLWDK 519

Query: 172 AKKSTLASIMLDNNEELKKAFYEILEISND-------EDIETLISDII--SNRTALKLI- 221
            +     +     +E   +   + ++I N+          + LI   I  + ++  + I 
Sbjct: 520 FQSKNDENWNWIKDEITLEIIDDFVKIKNEINTYKQLHSFDNLILKSIDFNLKSIFEKIN 579

Query: 222 -FFFFSYLWRRKIIEK 236
            F F  YL R+  IEK
Sbjct: 580 DFNFTEYLNRKSEIEK 595


>gi|330995470|ref|ZP_08319375.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841]
 gi|329575538|gb|EGG57076.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841]
          Length = 1138

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 20/139 (14%)

Query: 11  SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHI----LVQRVLRLLLANAHPST-L 65
           +E ID I     +            +    G+GKT +    +V+  L       HP   L
Sbjct: 686 NEEIDRIVLKAKQARDY------FLLVGPPGTGKTSVALKSMVEEFLS-----DHPQKTL 734

Query: 66  LCLTHTKAAAAEMSHRVLEI--ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123
           L + +T  A  E+ H +  I     +  +  E+  A   + +  K    D +  + +   
Sbjct: 735 LLMAYTNRAVDEICHTLSAINPAPEYIRIGQELNCAPDFRTRLMKHVTGDATSRKEIYEK 794

Query: 124 ILETPGGLKVQTIHAFCEA 142
           +   P  +   TI + C  
Sbjct: 795 L--APVRVFASTISSLCSQ 811


>gi|260557508|ref|ZP_05829723.1| large subunit terminase TerL [Acinetobacter baumannii ATCC 19606]
 gi|260409134|gb|EEX02437.1| large subunit terminase TerL [Acinetobacter baumannii ATCC 19606]
          Length = 508

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          ++  ++   GSGKT +L   + R +  NA  S  L L+ 
Sbjct: 61 KNLVINVPPGSGKTELLTNLIARGIARNAR-SRFLYLSF 98


>gi|227534126|ref|ZP_03964175.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227188233|gb|EEI68300.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 780

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++        +V   AGSGKT  ++QRV  LL
Sbjct: 227 QREQNQIIRDTKADLLFVQGAAGSGKTSAVLQRVAYLL 264


>gi|189183079|ref|YP_001936864.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179850|dbj|BAG39630.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 485

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N        I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 149 VYYNDIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 203

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 204 HKLATNRR-QKVIGLAPTHKAVSELRSK 230


>gi|116492207|ref|YP_803942.1| superfamily I DNA/RNA helicase [Pediococcus pentosaceus ATCC 25745]
 gi|116102357|gb|ABJ67500.1| Superfamily I DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 765

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           Q   +   ++S  + EQ      T +   +V   AGSGKT  ++QRV  LL
Sbjct: 198 QSDVKMKSIVSTIQREQNKIIRNTAADLLFVQGAAGSGKTAAILQRVAFLL 248


>gi|303241339|ref|ZP_07327843.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
 gi|302591072|gb|EFL60816.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
          Length = 696

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           +  A V   AG+GKT + + R   L         +L  T+T   A ++   + +I
Sbjct: 250 SGPAQVLGGAGTGKTVVAMHRAKTLASKLIEKEKILFTTYTANLAGDIKDNLRKI 304


>gi|269120467|ref|YP_003308644.1| magnesium transporter [Sebaldella termitidis ATCC 33386]
 gi|268614345|gb|ACZ08713.1| magnesium transporter [Sebaldella termitidis ATCC 33386]
          Length = 450

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208
              +I   F   D+ + K+++        A ++   +EEL++   +ILE+ +DE+I  + 
Sbjct: 32  HFIDIAESFEELDDSELKRILSLMSDENKAKVIEQADEELQE---KILELFSDEEIIQIF 88

Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIE 235
           S +  +   +  I  +  +  R+ I++
Sbjct: 89  SHM--SPDDITDILGYIEFQKRKSILD 113


>gi|229553229|ref|ZP_04441954.1| DNA helicase [Lactobacillus rhamnosus LMS2-1]
 gi|229313315|gb|EEN79288.1| DNA helicase [Lactobacillus rhamnosus LMS2-1]
          Length = 780

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++        +V   AGSGKT  ++QRV  LL
Sbjct: 227 QREQNQIIRDTKADLLFVQGAAGSGKTSAVLQRVAYLL 264


>gi|307151956|ref|YP_003887340.1| hypothetical protein Cyan7822_2083 [Cyanothece sp. PCC 7822]
 gi|306982184|gb|ADN14065.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
          Length = 707

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           AGSGKT +L  +V  L     HP   + +T 
Sbjct: 215 AGSGKTIVLALKVAYL--HATHPDWQIAVTF 243


>gi|116629091|ref|YP_814263.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853834|ref|ZP_04644199.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
 gi|116094673|gb|ABJ59825.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833529|gb|EEQ25801.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
          Length = 464

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 12  ETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           E I+    TK +  +  A    +S  V A  GSGKTH  +  +L ++  NA  +    +T
Sbjct: 25  EKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKTHAYLLPLLNMIDENAPVTQ-AVVT 83

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT-ILETP 128
              A + E+++++ ++       S   L+  I  + G       + KA +     I+ TP
Sbjct: 84  ---APSRELANQLYKVARQLRDASG--LNISIEYLGGGNDRNRQIEKAENRAPQLIIATP 138

Query: 129 GGLKVQTIHAFCEA 142
           G L     H F   
Sbjct: 139 GRL-----HDFASK 147


>gi|29831668|ref|NP_826302.1| ATP-dependent helicase [Streptomyces avermitilis MA-4680]
 gi|29608784|dbj|BAC72837.1| putative ATP-dependent helicase [Streptomyces avermitilis MA-4680]
          Length = 836

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 8   QEHSETI-DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           Q  S T+ D+++  ++EQ L+   P  S  +V    G+GKT + + R   LL
Sbjct: 229 QARSHTMRDIVASIQAEQDLVIRAPAASVTYVEGGPGTGKTAVALHRAAYLL 280


>gi|118580943|ref|YP_902193.1| superfamily I DNA/RNA helicase-like protein [Pelobacter propionicus
           DSM 2379]
 gi|118503653|gb|ABL00136.1| superfamily I DNA and RNA helicases-like protein [Pelobacter
           propionicus DSM 2379]
          Length = 636

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 5   NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--- 61
           N      + + LIS  +   + A        ++  AGSGKT + + R+  L   +     
Sbjct: 202 NQDHRMVDIVSLISPDQFHMITAEATDGCTLITGGAGSGKTVVSLHRLSCLQFNDPDRFT 261

Query: 62  PSTLLCLTHTK 72
           P   L L   K
Sbjct: 262 PERCLVLMFNK 272


>gi|288966005|gb|ADC79645.1| TamG [Streptomyces sp. 307-9]
          Length = 697

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  L+ S+   S  V    GSGKT + + R   LL
Sbjct: 198 DIVATIQPEQDNLVRSELNESVCVQGAPGSGKTAVGLHRAAYLL 241


>gi|285018002|ref|YP_003375713.1| hypothetical protein XALc_1215 [Xanthomonas albilineans GPE PC73]
 gi|283473220|emb|CBA15725.1| hypothetical protein XALc_1215 [Xanthomonas albilineans]
          Length = 627

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 11  SETIDLIS--QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           +E  DLI     + EQL  S       +   AGSGKT IL  R + L   +  P  +LC
Sbjct: 227 AEIPDLIKIMDLQQEQLARSLGDGHRVIHGVAGSGKTMILGYRCVELARRHVKPVLVLC 285


>gi|124087769|ref|XP_001346867.1| TRNA-splicing endonuclease positive effector [Paramecium
           tetraurelia strain d4-2]
 gi|145474903|ref|XP_001423474.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057256|emb|CAH03240.1| TRNA-splicing endonuclease positive effector, putative [Paramecium
           tetraurelia]
 gi|124390534|emb|CAK56076.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1124

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHIL------VQRVLRLLLANA 60
           F   ++  +    T  +Q++  D   S       G+GKTH L      V   ++ ++   
Sbjct: 493 FNYINQNYNFSQATAIQQIILQDRGISLL-QGPPGTGKTHTLIGLLSGVYEYMK-IMNKF 550

Query: 61  HPSTLLCLTHTKAAAAEMSHRVLE 84
               +L    + AA  E+  R+L+
Sbjct: 551 PKKKILICAPSNAAIDEIIFRILQ 574


>gi|330812027|ref|YP_004356489.1| Putative ATP-dependent DNA helicase [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327380135|gb|AEA71485.1| Putative ATP-dependent DNA helicase [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
          Length = 1437

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKT-----HILVQRVLRLLLANAHPST 64
           S+T   ++  ++         RS  V+A  GSGKT      +L   V R L     P  
Sbjct: 22 FSQTFPAVTAAQARAWPLIGQRRSTLVAAPTGSGKTLTAFLAVLDDLVHRGLEQGGLPDQ 81

Query: 65 LLCL 68
           L +
Sbjct: 82 TLVV 85


>gi|312870028|ref|ZP_07730165.1| putative helicase IV [Lactobacillus oris PB013-T2-3]
 gi|311094425|gb|EFQ52732.1| putative helicase IV [Lactobacillus oris PB013-T2-3]
          Length = 771

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   FQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
            Q      ++++  + EQ      T S    V   AGSGKT  ++QR+  LL
Sbjct: 198 AQNDQYMHNIVATIQQEQNDIIRNTSSDLLLVQGVAGSGKTSAILQRIAYLL 249


>gi|297619497|ref|YP_003707602.1| Superfamily I DNA and RNA helicase-like protein [Methanococcus
           voltae A3]
 gi|297378474|gb|ADI36629.1| Superfamily I DNA and RNA helicase-like protein [Methanococcus
           voltae A3]
          Length = 713

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 40/155 (25%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           Y   + E  + +D+    + E++    P+    ++   GSGKT IL+ R + L   N   
Sbjct: 284 YEKDYNELIKVLDV----EQEKISKKIPSGHFMITGVPGSGKTVILLSRAIFLAKNNPD- 338

Query: 63  STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
             +  LT+ K  + E  +                L    TKI  +               
Sbjct: 339 WKIRVLTYNKTLSEEFKN---------------NLRTVCTKIGNEDI------------- 370

Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
                   ++V T H F + +   F   +N    +
Sbjct: 371 -----LNNIEVSTFHKFAKEL--YFTYNSNYNPTY 398


>gi|254580966|ref|XP_002496468.1| ZYRO0D00770p [Zygosaccharomyces rouxii]
 gi|238939360|emb|CAR27535.1| ZYRO0D00770p [Zygosaccharomyces rouxii]
          Length = 655

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           + ++  + + +  S     + +    G+GKT+ LV+ + +L+        +L 
Sbjct: 185 ESLNDPQRQAIRFSLSNEISIIHGPPGTGKTYTLVELIQQLVERG---QRVLV 234


>gi|190149656|ref|YP_001968181.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307262964|ref|ZP_07544586.1| hypothetical protein appser13_3870 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914787|gb|ACE61039.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306871590|gb|EFN03312.1| hypothetical protein appser13_3870 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 1333

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 49/201 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL------- 120
            +     A E+   +   +      +D++    + K+       +++   R+L       
Sbjct: 145 RSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYLNQYDTLI 204

Query: 121 -----------------LITILETPGGLKV----QTIH------AFCEA-IM----QQFP 148
                            L  IL     LKV     TI        F  A I+    + FP
Sbjct: 205 IDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSRHFNNAPIIEVSGRTFP 264

Query: 149 LEANITSHFAIADEEQSKKLI 169
           +E        + +EE   +L 
Sbjct: 265 VEVRYRP---VVEEEDQDQLQ 282


>gi|126438208|ref|YP_001073899.1| putative helicase [Mycobacterium sp. JLS]
 gi|126238008|gb|ABO01409.1| putative helicase [Mycobacterium sp. JLS]
          Length = 724

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ      D      +    G+GKT + + RV  LL
Sbjct: 169 DIVATIQAEQDAIIRLDHPGVLVIEGGPGTGKTVVALHRVAYLL 212


>gi|326565386|gb|EGE15563.1| exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis
           103P14B1]
 gi|326573375|gb|EGE23343.1| exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis
           101P30B1]
 gi|326575730|gb|EGE25653.1| exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis CO72]
          Length = 685

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH- 70
           +  + ++  + + +          ++   G+GKT  + Q V+ L   + H    L L   
Sbjct: 242 QLPNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAP 301

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           T  AA  MS  +L+ +   + +        I ++ G   N S    A++ L
Sbjct: 302 TGKAAQRMSESLLKSLDKANDIQLPK-PKTIHRLLGIGANGSPRYDAKNQL 351


>gi|308179548|ref|YP_003923676.1| ATP-dependent DNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045039|gb|ADN97582.1| ATP-dependent DNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 696

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q  +   ++++  + EQ  +  D T    V    AGSGKT  ++QR+  LL
Sbjct: 127 QNDAYMQNIVATIQKEQNDIIRDTTSDLLVVQGVAGSGKTSAILQRIAFLL 177


>gi|307247362|ref|ZP_07529410.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306856206|gb|EFM88361.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 1108

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 49/201 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL------- 120
            +     A E+   +   +      +D++    + K+       +++   R+L       
Sbjct: 145 RSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYLNQYDTLI 204

Query: 121 -----------------LITILETPGGLKV----QTIH------AFCEA-IM----QQFP 148
                            L  IL     LKV     TI        F  A I+    + FP
Sbjct: 205 IDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSRHFNNAPIIEVSGRTFP 264

Query: 149 LEANITSHFAIADEEQSKKLI 169
           +E        + +EE   +L 
Sbjct: 265 VEVRYRP---VVEEEDQDQLQ 282


>gi|282877092|ref|ZP_06285934.1| putative DNA helicase [Prevotella buccalis ATCC 35310]
 gi|281300774|gb|EFA93101.1| putative DNA helicase [Prevotella buccalis ATCC 35310]
          Length = 659

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           ++  ++E +      +   V     G+GKT  LV+ +   L      S +L    +  A 
Sbjct: 204 LNDLQAEAVNKVLKAKDVMVVHGPPGTGKTTTLVEAIYETLKRE---SQVLVCAQSNMAV 260

Query: 76  AEMSHRVLE------IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
             +S R+++       I   + ++D++LS    +     P+   +   R  L  + + 
Sbjct: 261 DWISERLVDRGVNVLRIGNPTRVNDKMLSFTYERRFESHPDYPQLWAIRKALRQLKQH 318


>gi|257453821|ref|ZP_05619099.1| exodeoxyribonuclease V, alpha subunit [Enhydrobacter aerosaccus
           SK60]
 gi|257448748|gb|EEV23713.1| exodeoxyribonuclease V, alpha subunit [Enhydrobacter aerosaccus
           SK60]
          Length = 653

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 9   EHSETID-LISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAH---- 61
             S+ ID  ++    +QL     ++ A   +    G+GKT  + + V  L   + H    
Sbjct: 173 SASQDIDNGLAPNAMQQLAIEKSSQHALSIIIGGPGTGKTFTVAKLVTTLQKEHEHKRKQ 232

Query: 62  -----PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDM 114
                P ++     T  AA  M   +   +       +  L     + ++ G   + +  
Sbjct: 233 DPNLPPLSITLTAPTGKAAQRMQQSLRISLQKSLQDEEITLDNAKTLHRLLGIGSDGTPR 292

Query: 115 SKARHLLITIL 125
             A++ L   L
Sbjct: 293 YHAKNPLPDDL 303


>gi|219669097|ref|YP_002459532.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539357|gb|ACL21096.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
          hafniense DCB-2]
          Length = 762

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHI---LVQRVL 53
          + E L A D  +S  V+A  G+GKT +   LV++V+
Sbjct: 27 QEEALDAIDEGQSVIVAAPTGTGKTLVADYLVEKVM 62


>gi|319411687|emb|CBQ73731.1| conserved hypothetical protein [Sporisorium reilianum]
          Length = 1848

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 6/144 (4%)

Query: 76  AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
           +E+  R+  I +  S + ++ L     +++   P  +D +  R L            +  
Sbjct: 294 SELRERIERIDSDLSLIRNDTLGLS-EEVESTTPEVADETYQRVLEAEARTRQLHAFI-- 350

Query: 136 IHAFCEAIMQQFPLEANITSH-F-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            H+ C    Q +P+   I +  F  IA       L++E  +  +  +  D N+ L+++ +
Sbjct: 351 -HSTCSPDSQGWPVADKIDAETFDEIARSANELMLLDEVVREGVQRLTQDRNDILERSLH 409

Query: 194 EILEISNDEDIETLISDIISNRTA 217
            +++IS  +   T    +++   A
Sbjct: 410 LLIDISGIQSEFTETGSLLAAVDA 433


>gi|291241327|ref|XP_002740564.1| PREDICTED: KIAA0560 protein-like [Saccoglossus kowalevskii]
          Length = 1172

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 18  SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77
           + T+ E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  +
Sbjct: 775 TPTQIEAIKAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNFPDQRTLIVTHSNQALNQ 833

Query: 78  MSHRVLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +  +++ +     HL      +E L  E    +  + N   +++   LL  +      L
Sbjct: 834 LFEKIIALDIDERHLLRLGHGEEALETEKDFSRYGRVNFV-LARRLELLKEVARLQESL 891


>gi|262193351|ref|YP_003264560.1| UvrD/Rep helicase family protein [Haliangium ochraceum DSM 14365]
 gi|262076698|gb|ACY12667.1| UvrD/Rep helicase family protein [Haliangium ochraceum DSM 14365]
          Length = 852

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 6   SFQEHSETIDLISQTKSEQLLASDPTRSAWVS-ANAGSGKTHILVQRVLRLLLANAH--- 61
           S  E +  ID       +  L + P     V    AGSGKT + + R+  L  A+     
Sbjct: 265 SLPEIAALIDG-----EQFDLITQPESGMVVIQGGAGSGKTTVALHRIAYLNFADRSRFR 319

Query: 62  PSTLL 66
           P  +L
Sbjct: 320 PQNIL 324


>gi|300767075|ref|ZP_07076988.1| ATP-dependent DNA helicase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495613|gb|EFK30768.1| ATP-dependent DNA helicase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 769

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q  +   ++++  + EQ  +  D T    V    AGSGKT  ++QR+  LL
Sbjct: 200 QNDAYMQNIVATIQKEQNDIIRDTTSDLLVVQGVAGSGKTSAILQRIAFLL 250


>gi|189183921|ref|YP_001937706.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180692|dbj|BAG40472.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 444

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N        I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 335 VYYNDIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 389

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 390 HKLATNRR-QKVIGLAPTHKAVSELRSK 416


>gi|311747182|ref|ZP_07720967.1| hypothetical protein ALPR1_12580 [Algoriphagus sp. PR1]
 gi|126578891|gb|EAZ83055.1| hypothetical protein ALPR1_12580 [Algoriphagus sp. PR1]
          Length = 772

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM--SHRVLEIITAWSHLSDEI 96
             G+GKTH + + V RL   N    ++L    T  AA E+     + E++         +
Sbjct: 214 PPGTGKTHQVAEIVSRLAKTN---KSVLITALTNKAAVEVCKKESIAELLKNNKISKLPL 270

Query: 97  LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132
              E          K  ++   H+L+T       + 
Sbjct: 271 SIDEKKMFPDLGLAKELVASKGHVLLTTYYQFSRIW 306


>gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 433

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHT 71
           ++  + + + A    +    SA  G+GKT      +L+ ++ N        + +L LT T
Sbjct: 24  MTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSNARVLILTPT 83

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +    E++ +V + + A+S    + L+  +  I G    ++   K +     I+ TPG L
Sbjct: 84  R----ELAAQVADNVEAYS----KYLNFSVLTIYGGVKVETQAQKLKRGADIIVATPGRL 135


>gi|327441557|dbj|BAK17922.1| superfamily I DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 730

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 33  SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCL 68
           +  V    GSGKT + +QR+  LL       +  ++L +
Sbjct: 220 NLIVLGPPGSGKTSVAMQRIAYLLYEYRQTMNARSILLI 258


>gi|294500624|ref|YP_003564324.1| hypothetical protein BMQ_3877 [Bacillus megaterium QM B1551]
 gi|294350561|gb|ADE70890.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
          Length = 772

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           HN+  +    +  I Q +  Q++ ++  +   V   AGSGKT   +QRV  LL
Sbjct: 198 HNASSQMKSIVATI-QKEQNQIIRNEKNKVLIVQGVAGSGKTSAALQRVAYLL 249


>gi|254565491|ref|XP_002489856.1| Hexameric DNA polymerase alpha-associated DNA helicase A involved
           in lagging strand DNA synthesis [Pichia pastoris GS115]
 gi|238029652|emb|CAY67575.1| Hexameric DNA polymerase alpha-associated DNA helicase A involved
           in lagging strand DNA synthesis [Pichia pastoris GS115]
 gi|328350271|emb|CCA36671.1| hypothetical protein PP7435_Chr1-0519 [Pichia pastoris CBS 7435]
          Length = 726

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 21/127 (16%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTL 65
           D ++ ++ E +  +  +    +    G+GKT  LV+ V +L+ A            PS +
Sbjct: 239 DGLNDSQREAINFALQSPITIIHGPPGTGKTSTLVELVRQLVKARGSSSKRILICGPSNI 298

Query: 66  LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
              T            +LE +        + +S  I      +   S ++ +  LLI   
Sbjct: 299 SVDT------------ILERLDDLYPNKADSMSKLIRVGHPARLLSSILNHSLELLIQGS 346

Query: 126 ETPGGLK 132
           E+   LK
Sbjct: 347 ESNEILK 353


>gi|146300475|ref|YP_001195066.1| PhoH family protein [Flavobacterium johnsoniae UW101]
 gi|146154893|gb|ABQ05747.1| PhoH family protein [Flavobacterium johnsoniae UW101]
          Length = 316

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 16/95 (16%)

Query: 18  SQTKSEQLLASDPTRSAWVSA--NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA- 74
           + T ++QLL     ++  V A   AG+GKT+  V   +++L        +L    T+ A 
Sbjct: 109 AMTPNQQLLVDTIKKNDMVFAVGPAGTGKTYTGVAMAVKMLKDKEVKRIIL----TRPAV 164

Query: 75  -AAE--------MSHRVLEIITAWSHLSDEILSAE 100
            A E        M  ++   +        +++  E
Sbjct: 165 EAGENLGFLPGDMKEKLDPYMQPLYDALRDMIPNE 199


>gi|311111123|ref|ZP_07712520.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|311066277|gb|EFQ46617.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 461

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 12  ETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
           E I+    TK +  +  A    +S  V A  GSGKTH  +  +L ++  NA  +    +T
Sbjct: 22  EKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKTHAYLLPLLNMIDENAPVTQ-AVVT 80

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT-ILETP 128
              A + E+++++ ++       S   L+  I  + G       + KA +     I+ TP
Sbjct: 81  ---APSRELANQLYKVARQLRDASG--LNISIEYLGGGNDRNRQIEKAENRAPQLIIATP 135

Query: 129 GGLKVQTIHAFCEA 142
           G L     H F   
Sbjct: 136 GRL-----HDFASK 144


>gi|17548349|ref|NP_521689.1| hypothetical protein RS02993 [Ralstonia solanacearum GMI1000]
 gi|17430595|emb|CAD17279.1| putative helicase protein [Ralstonia solanacearum GMI1000]
          Length = 612

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 72/227 (31%), Gaps = 62/227 (27%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             + EQL  S       +   AGSGKT IL  R   L  A+A P  +L L   +A A   
Sbjct: 240 DLQQEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQASAKP--VLVLCFNRALA--- 294

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                                   K+ G   +K    K              + V+T H+
Sbjct: 295 -----------------------QKLTGWMEHKGLSQK--------------VHVRTFHS 317

Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST---------LASIMLDNNEELK 189
           +C  +   +  +    S      +E  + L++                +++++D   +  
Sbjct: 318 WCVEMATTY--QLGKLSGRR---DEDYEALVQNVIDGVNRGQVPAGQYSALLIDEGHDFD 372

Query: 190 KAFYEILEISNDEDIETLI------SDIISNRTALKLIFFFFSYLWR 230
            A+  ++    D +  +++       DI      LK  F       R
Sbjct: 373 PAWLRLVVQMVDPETNSVLVMYDSAQDIYQKSRKLKFSFSSVGIQAR 419


>gi|326560524|gb|EGE10906.1| exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis 7169]
          Length = 685

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 12  ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH- 70
           +  + ++  + + +          ++   G+GKT  + Q V+ L   + H    L L   
Sbjct: 242 QLPNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAP 301

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
           T  AA  MS  +L+ +   + +        I ++ G   N S    A++ L
Sbjct: 302 TGKAAQRMSESLLKSLDKANDIQLPK-PKTIHRLLGIGANGSPRYDAKNQL 351


>gi|325955236|ref|YP_004238896.1| ATPase AAA [Weeksella virosa DSM 16922]
 gi|323437854|gb|ADX68318.1| AAA ATPase [Weeksella virosa DSM 16922]
          Length = 559

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-TKAAAAEM 78
            +S+ L      R+ +++ +AG+GKT++L Q +  L          + +T  T  AA  M
Sbjct: 2   KQSKALAILKSGRNVFLTGSAGAGKTYVLNQYIDYLKKHGVG----VAVTASTGIAATHM 57

Query: 79  SHRVLEIITAWSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           +    + I +W+ +   D +    +T ++ KK  +  M K + L+I  +     
Sbjct: 58  N---GQTIHSWAGIGIRDYVSDRYLTSLREKKYFRDKMEKVKVLIIDEISMLHR 108


>gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 628

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 6  SFQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
          +     E       T  +Q    A    R   V+A  G+GKT      +L  L  N HP 
Sbjct: 11 ALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPD 70

Query: 64 ----------TLLCLTHTKAAAA 76
                     +L LT T+  AA
Sbjct: 71 KSQRHGPRQPRVLVLTPTRELAA 93


>gi|307249585|ref|ZP_07531572.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858440|gb|EFM90509.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 1299

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 49/201 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL------- 120
            +     A E+   +   +      +D++    + K+       +++   R+L       
Sbjct: 145 RSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYLNQYDTLI 204

Query: 121 -----------------LITILETPGGLKV----QTIH------AFCEA-IM----QQFP 148
                            L  IL     LKV     TI        F  A I+    + FP
Sbjct: 205 IDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSRHFNNAPIIEVSGRTFP 264

Query: 149 LEANITSHFAIADEEQSKKLI 169
           +E        + +EE   +L 
Sbjct: 265 VEVRYRP---VVEEEDQDQLQ 282


>gi|300696666|ref|YP_003747327.1| helicase protein [Ralstonia solanacearum CFBP2957]
 gi|299073390|emb|CBJ52901.1| putative helicase protein [Ralstonia solanacearum CFBP2957]
          Length = 627

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
             + EQL  S       +   AGSGKT IL  R   L  A+A P  +L L   +A A
Sbjct: 240 DLQQEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQASAKP--VLVLCFNRALA 294


>gi|299068538|emb|CBJ39765.1| putative helicase protein [Ralstonia solanacearum CMR15]
          Length = 612

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
             + EQL  S       +   AGSGKT IL  R   L  A+A P  +L L   +A A
Sbjct: 240 DLQQEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQASAKP--VLVLCFNRALA 294


>gi|229551441|ref|ZP_04440166.1| DNA helicase [Lactobacillus rhamnosus LMS2-1]
 gi|258540814|ref|YP_003175313.1| DNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|229315198|gb|EEN81171.1| DNA helicase [Lactobacillus rhamnosus LMS2-1]
 gi|257152490|emb|CAR91462.1| DNA helicase [Lactobacillus rhamnosus Lc 705]
          Length = 762

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ  +  D +    V    AGSGKT  ++QRV  LL
Sbjct: 196 QSDEYMKNIVATIQREQNDIIRDTSSDLLVVQGVAGSGKTSAVLQRVAYLL 246


>gi|189183569|ref|YP_001937354.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180340|dbj|BAG40120.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 664

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N        I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 328 VYYNDIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 382

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 383 HKLATNRR-QKVIGLAPTHKAVSELRSK 409


>gi|170030074|ref|XP_001842915.1| potentail helicase MOV-10 [Culex quinquefasciatus]
 gi|167865921|gb|EDS29304.1| potentail helicase MOV-10 [Culex quinquefasciatus]
          Length = 517

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 39 NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
            G+GKT  L + + ++       + L+  T +  AA E+++R+L ++
Sbjct: 22 PPGTGKTSTLAEAIGQIYHQRPKENVLVAAT-SNFAANELTNRLLGVV 68


>gi|109091643|ref|XP_001098884.1| PREDICTED: NFX1-type zinc finger-containing protein 1 isoform 1
           [Macaca mulatta]
          Length = 1918

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPST-------LLCL 68
           +  ++ E L  +     A +    G+GKT++ L  ++++ LL N            +L +
Sbjct: 598 LDDSQMEALQFALTRELAIIQGPPGTGKTYVGL--KIVQALLTNESVWQISLQKFPILVV 655

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128
            +T  A  +    + +             ++EI K    +  ++     R+L + +    
Sbjct: 656 CYTNHALDQFLEGIYKCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRRAY 715

Query: 129 GGLKVQT 135
             + + T
Sbjct: 716 --MSIMT 720


>gi|118380659|ref|XP_001023493.1| hypothetical protein TTHERM_00535840 [Tetrahymena thermophila]
 gi|89305260|gb|EAS03248.1| hypothetical protein TTHERM_00535840 [Tetrahymena thermophila SB210]
          Length = 1433

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 17   ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            ++ ++ + LLA+     + + A  GSGK  +L + ++     N+    LLC+  T+    
Sbjct: 993  LNPSQYQALLAAHRQSLSLIQAPNGSGKMRVLKRLIMLWAQQNSKLKILLCVHSTER--- 1049

Query: 77   EMSHRVLEIITAWSHLSDEILSAEITKIQ 105
             M   V   + +    + E+   + TKI+
Sbjct: 1050 -MRQ-VYHALRSCDINAIEVSEKQTTKIE 1076


>gi|255082057|ref|XP_002508247.1| predicted protein [Micromonas sp. RCC299]
 gi|226523523|gb|ACO69505.1| predicted protein [Micromonas sp. RCC299]
          Length = 1188

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 18/146 (12%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           +++++++ L A+   R   +    G+GKTH  V  V   L     P  +LC + +  A  
Sbjct: 653 MNKSQTDALEAALFQRVTLIQGPPGTGKTHTAVALVQMWLRNRTSP--ILCTSDSNIAVD 710

Query: 77  EMSH-------RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            +         RV   I     +  +++   +  I G +P  +     ++  I  +    
Sbjct: 711 NLVDGLSRAGVRV-ARIGRPEAVRQDLMQFMVESIAGIEPGSNMSKDQQYQAINGVLRRA 769

Query: 130 GLKVQTIHAFCE----AIMQQFPLEA 151
            +   T    C      I+++F  +A
Sbjct: 770 EVVCAT----CAGAGSDILERFSFQA 791


>gi|254386146|ref|ZP_05001459.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194345004|gb|EDX25970.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 758

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 22  SEQLLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
            +  +   P R   V     G+GKT + + R   LL A+     LL 
Sbjct: 186 EQDRIIRSPHRGVLVVEGGPGTGKTAVALHRAAYLLYAH---RELLA 229


>gi|195378560|ref|XP_002048051.1| GJ13751 [Drosophila virilis]
 gi|194155209|gb|EDW70393.1| GJ13751 [Drosophila virilis]
          Length = 1925

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
              +  ++  AG+GKT +LV+R+L  L     
Sbjct: 476 RQGNVLLTGAAGTGKT-VLVERILEQLSRQPD 506


>gi|159479006|ref|XP_001697589.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158274199|gb|EDO99982.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 3730

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V    G+GKT     ++  L       + LL    T AA  E + R ++++ A      
Sbjct: 382 LVQGPPGTGKTSTTAAQLSVLAAVGRPGTALLATAPTNAAVGETASRFVKLVAAGGQQFA 441

Query: 95  EILSAEITKIQGKKPNKSDM 114
           +  +A   +  G +     +
Sbjct: 442 DSEAAAELRRHGLRVEPPLL 461


>gi|89894658|ref|YP_518145.1| hypothetical protein DSY1912 [Desulfitobacterium hafniense Y51]
 gi|89334106|dbj|BAE83701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 750

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHI---LVQRVL 53
          + E L A D  +S  V+A  G+GKT +   LV++V+
Sbjct: 15 QEEALDAIDEGQSVIVAAPTGTGKTLVADYLVEKVM 50


>gi|67901330|ref|XP_680921.1| hypothetical protein AN7652.2 [Aspergillus nidulans FGSC A4]
 gi|40742648|gb|EAA61838.1| hypothetical protein AN7652.2 [Aspergillus nidulans FGSC A4]
 gi|259483986|tpe|CBF79824.1| TPA: DNA helicase, putative (AFU_orthologue; AFUA_2G01090)
           [Aspergillus nidulans FGSC A4]
          Length = 686

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 12  ETIDL-ISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAH-----PST 64
           E ID  ++ ++ E +  +  +R    +    G+GKTH L++ +++++  N       PS 
Sbjct: 242 EFIDPTLNDSQKEAIQFALASRDIALIHGPPGTGKTHTLIELIIQMVKRNLRVLVCGPSN 301

Query: 65  L 65
           +
Sbjct: 302 I 302


>gi|306836293|ref|ZP_07469274.1| ATP-dependent helicase HrpA [Corynebacterium accolens ATCC 49726]
 gi|304567813|gb|EFM43397.1| ATP-dependent helicase HrpA [Corynebacterium accolens ATCC 49726]
          Length = 1300

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 77/248 (31%), Gaps = 57/248 (22%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLCLTHTKA 73
           + + + A+       + A   GSGKT  +      + R  R L+ +  P  +   T  + 
Sbjct: 80  RKDDIAAAIEENQVVIIAGETGSGKTTQIPKICLDIGRGRRGLIGHTQPRRIAARTVAER 139

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL------------- 120
            A+E+   + E +       D+I      K+       ++M + R L             
Sbjct: 140 IASELDQDIGESVGYAIRFDDQISDTTAVKLMTDGILLAEMQRDRFLNKYDTIIIDEAHE 199

Query: 121 -----------LITILETPGGLKV----QTIH--AFCEA----------IM----QQFPL 149
                      L  +L     LKV     TI   +F E           I+    + +P+
Sbjct: 200 RSLNIDFLLGYLKRLLPKRPDLKVIITSATIDPESFAEHFAQPDGTPAPIIEVSGRTYPV 259

Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209
           E          + E   KL+++     L   + +   E             + DI   + 
Sbjct: 260 EIRYRP----LEFEAGGKLVDQDPLDGLTEAIEELMAEGDGDILCF--FPGERDIRDAME 313

Query: 210 DIISNRTA 217
            I + +  
Sbjct: 314 AIEAKKWK 321


>gi|303249727|ref|ZP_07335931.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251914|ref|ZP_07533815.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651294|gb|EFL81446.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860606|gb|EFM92618.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 1333

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 49/201 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL------- 120
            +     A E+   +   +      +D++    + K+       +++   R+L       
Sbjct: 145 RSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYLNQYDTLI 204

Query: 121 -----------------LITILETPGGLKV----QTIH------AFCEA-IM----QQFP 148
                            L  IL     LKV     TI        F  A I+    + FP
Sbjct: 205 IDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSRHFNNAPIIEVSGRTFP 264

Query: 149 LEANITSHFAIADEEQSKKLI 169
           +E        + +EE   +L 
Sbjct: 265 VEVRYRP---VVEEEDQDQLQ 282


>gi|296119676|ref|ZP_06838234.1| superfamily I DNA or RNA helicase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295967559|gb|EFG80826.1| superfamily I DNA or RNA helicase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 724

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q + ++++  +      V    G+GKT + + R+  LL  +
Sbjct: 183 QREQDEIIRDERRGVMVVDGGPGTGKTAVALHRIAYLLYNH 223


>gi|227833189|ref|YP_002834896.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184175|ref|ZP_06043596.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454205|gb|ACP32958.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
          Length = 746

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + ++++         V    G+GKT + + RV  LL
Sbjct: 210 QREQDEIIRDSTRGVMVVEGGPGTGKTAVALHRVAYLL 247


>gi|189184834|ref|YP_001938619.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181605|dbj|BAG41385.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 670

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N        I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 334 VYYNDIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 388

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 389 HKLATNRR-QKVIGLAPTHKAVSELRSK 415


>gi|42782567|ref|NP_979814.1| hypothetical protein BCE_3516 [Bacillus cereus ATCC 10987]
 gi|42738493|gb|AAS42422.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 768

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++ +D +    V   AGSGKT   +QRV  LL
Sbjct: 210 QREQNQIIRNDKSDVLIVQGTAGSGKTSAALQRVAYLL 247


>gi|28377335|ref|NP_784227.1| DNA helicase (putative) [Lactobacillus plantarum WCFS1]
 gi|28270167|emb|CAD63066.1| DNA helicase (putative) [Lactobacillus plantarum WCFS1]
          Length = 769

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q  +   ++++  + EQ  +  D T    V    AGSGKT  ++QR+  LL
Sbjct: 200 QNDAYMQNIVATIQKEQNDIIRDTTSDLLVVQGVAGSGKTSAILQRIAFLL 250


>gi|116495451|ref|YP_807185.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116105601|gb|ABJ70743.1| Superfamily I DNA and RNA helicase [Lactobacillus casei ATCC 334]
          Length = 763

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++        +V   AGSGKT  ++QRV  LL
Sbjct: 210 QREQNQIIRDTKADLLFVQGAAGSGKTSAVLQRVAYLL 247


>gi|330999157|ref|ZP_08322876.1| ATP-dependent helicase HrpA [Parasutterella excrementihominis YIT
           11859]
 gi|329575357|gb|EGG56901.1| ATP-dependent helicase HrpA [Parasutterella excrementihominis YIT
           11859]
          Length = 1389

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKT------HILVQRVLRLLLANAHPSTLLCLTH 70
           +S+   E   A    +   VS   GSGKT       ++V R  + L+ +  P  +   + 
Sbjct: 153 VSERADEIAEAIKNNQVVIVSGETGSGKTTQLPKIAMMVGRGQKGLIGHTQPRRIAATSI 212

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            K  + EM   V ++        DE+      K+       ++  + R L
Sbjct: 213 AKRISEEMDAEVGQVAGYKIRFKDELEPGATIKLMTDGILLAETQRDRLL 262


>gi|324330321|gb|ADY38539.1| TrdG [Streptomyces sp. SCSIO1666]
          Length = 697

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ  L+ S+   S  V    GSGKT + + R   LL
Sbjct: 198 DIVATIQPEQDNLVRSELNESVCVQGAPGSGKTAVGLHRAAYLL 241


>gi|303256970|ref|ZP_07342984.1| ATP-dependent helicase HrpA [Burkholderiales bacterium 1_1_47]
 gi|302860461|gb|EFL83538.1| ATP-dependent helicase HrpA [Burkholderiales bacterium 1_1_47]
          Length = 1381

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKT------HILVQRVLRLLLANAHPSTLLCLTH 70
           +S+   E   A    +   VS   GSGKT       ++V R  + L+ +  P  +   + 
Sbjct: 145 VSERADEIAEAIKNNQVVIVSGETGSGKTTQLPKIAMMVGRGQKGLIGHTQPRRIAATSI 204

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            K  + EM   V ++        DE+      K+       ++  + R L
Sbjct: 205 AKRISEEMDAEVGQVAGYKIRFKDELEPGATIKLMTDGILLAETQRDRLL 254


>gi|294629999|ref|ZP_06708559.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292833332|gb|EFF91681.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 671

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ        S    V    G+GKT + + RV  LL
Sbjct: 169 DIVATIQPEQDEIVRSGLSGTVCVQGGPGTGKTAVGLHRVAYLL 212


>gi|255021954|ref|ZP_05293962.1| putative DNA helicase [Acidithiobacillus caldus ATCC 51756]
 gi|254968590|gb|EET26144.1| putative DNA helicase [Acidithiobacillus caldus ATCC 51756]
          Length = 127

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
          ++  + + +  +    S  VSA AG+GKT  LV
Sbjct: 3  LTDEQQKAVAMAQKMESFKVSALAGTGKTSTLV 35


>gi|195347896|ref|XP_002040487.1| GM18902 [Drosophila sechellia]
 gi|194121915|gb|EDW43958.1| GM18902 [Drosophila sechellia]
          Length = 1113

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLL 56
           H + +  +  + L    + +Q++ +   +   + A   GSGKT  L             +
Sbjct: 248 HRTTEVQNARLRLPILAEEQQVMETINEKPIVIVAGETGSGKTTQLPQFLYEAGYAQHKM 307

Query: 57  LANAHPSTLLCLTHTKAAAAEM 78
           +    P  +  +  +K  A EM
Sbjct: 308 IGVTEPRRVAAIAMSKRVAHEM 329


>gi|195128961|ref|XP_002008927.1| GI13761 [Drosophila mojavensis]
 gi|193920536|gb|EDW19403.1| GI13761 [Drosophila mojavensis]
          Length = 1981

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
              +  ++  AG+GKT +LV+R+L  L     
Sbjct: 476 RQGNVLLTGAAGTGKT-VLVERILEQLSGKPD 506


>gi|50309513|ref|XP_454766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643901|emb|CAG99853.1| KLLA0E18085p [Kluyveromyces lactis]
          Length = 681

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           + +++++ + +  S     + +    G+GKT+ LV+ + +L         +L 
Sbjct: 200 EQLNESQRDAIQHSLSNEISIIHGPPGTGKTYTLVELIKQLYDRG---ERILV 249


>gi|261350062|ref|ZP_05975479.1| putative DNA helicase [Methanobrevibacter smithii DSM 2374]
 gi|288860848|gb|EFC93146.1| putative DNA helicase [Methanobrevibacter smithii DSM 2374]
          Length = 658

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 14/138 (10%)

Query: 5   NSFQEHSETID-LISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHP 62
           N  +++ + ID  +++++   +  +  T + ++     G+GKT  LV+    L+      
Sbjct: 159 NKKEKYIDFIDKSLNESQKNAVRNAVNTENFFLIHGPFGTGKTRTLVE----LIQQEVRQ 214

Query: 63  STLLCLTH-TKAAAAEMSHRVLE-------IITAWSHLSDEILSAEITKIQGKKPNKSDM 114
           S  + +T  + +A   +  R+ +        +     +S E ++  +            +
Sbjct: 215 SNKVLVTAESNSAVDNILDRLSQNKKLKITRLGHPQRVSKENIAYSLAYKSENHQLTCKI 274

Query: 115 SKARHLLITILETPGGLK 132
           +K    +  I ET     
Sbjct: 275 NKNYKRIEQISETRDRFT 292


>gi|219122468|ref|XP_002181566.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406842|gb|EEC46780.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 491

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 18/128 (14%)

Query: 14  IDLISQTKSEQ--LLASDPTRSAWVSANAGSGKT--HILVQRVLRLLLANAHPSTLLCLT 69
            D  S  + E    + +DP R+    A AGSGK+    L     R+++ +   +  LC+T
Sbjct: 117 FDRPSAIQEEALPRILADPMRNLIGQAQAGSGKSAAFTLGMLY-RIVVDSPATTQALCVT 175

Query: 70  HTK--------AA----AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117
            T+         A    AA M   +   +   +   D   + +   + G     SD  K 
Sbjct: 176 PTRELAIQIVDKAVKPLAANMKG-LKICLAIANTFIDRGKTVDAHLVVGTPGKVSDFLKR 234

Query: 118 RHLLITIL 125
           ++L    +
Sbjct: 235 KNLNPRTI 242


>gi|207722720|ref|YP_002253156.1| helicase protein [Ralstonia solanacearum MolK2]
 gi|206587902|emb|CAQ18484.1| helicase protein [Ralstonia solanacearum MolK2]
          Length = 598

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
             + EQL  S       +   AGSGKT IL  R   L  A+A P  +L L   +A A
Sbjct: 226 DLQQEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQASAKP--VLVLCFNRALA 280


>gi|116333109|ref|YP_794636.1| superfamily I DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098456|gb|ABJ63605.1| Superfamily I DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 768

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 1   MIYHNSFQEHSETIDLISQT--KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           M+ H   +++  T+  I  T  + +  +  D      V    AGSGKT  ++QR+  LL
Sbjct: 190 MLQHALGEQNDATMQNIVATIQREQNDIIRDTRSDLLVVQGVAGSGKTSAILQRIAFLL 248


>gi|148657055|ref|YP_001277260.1| superfamily I DNA/RNA helicase-like protein [Roseiflexus sp. RS-1]
 gi|148569165|gb|ABQ91310.1| Superfamily I DNA and RNA helicase-like protein [Roseiflexus sp.
           RS-1]
          Length = 696

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80
             + +  D    A V+ +AG+GKT + + R   L  A  HP   +L  T + A A  +  
Sbjct: 241 QREWVEKDFNGPARVAGSAGTGKTVVALHRAASL--ARRHPDARVLLTTFSDALANALQS 298

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGK 107
               +I     L+  +    +  +  +
Sbjct: 299 LFRRLIAGEPRLAGRVDIRALNAVGER 325


>gi|108802226|ref|YP_642423.1| putative helicase [Mycobacterium sp. MCS]
 gi|119871379|ref|YP_941331.1| putative helicase [Mycobacterium sp. KMS]
 gi|108772645|gb|ABG11367.1| putative helicase [Mycobacterium sp. MCS]
 gi|119697468|gb|ABL94541.1| putative helicase [Mycobacterium sp. KMS]
          Length = 724

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ      D      +    G+GKT + + RV  LL
Sbjct: 169 DIVATIQAEQDAIIRLDHPGVLVIEGGPGTGKTVVALHRVAYLL 212


>gi|19552589|ref|NP_600591.1| hypothetical protein NCgl1319 [Corynebacterium glutamicum ATCC
           13032]
 gi|62390258|ref|YP_225660.1| superfamily I DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325595|emb|CAF21384.1| Superfamily I DNA or RNA helicase [Corynebacterium glutamicum ATCC
           13032]
          Length = 755

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           + +  +  D TR    V    G+GKT + + RV  LL
Sbjct: 215 REQDEIIRDTTRGVMVVQGGPGTGKTAVALHRVAYLL 251


>gi|300693132|ref|YP_003749105.1| helicase protein [Ralstonia solanacearum PSI07]
 gi|299075169|emb|CBJ34452.2| putative helicase protein [Ralstonia solanacearum PSI07]
          Length = 612

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 66/229 (28%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78
             + EQL  S       +   AGSGKT IL  R   L  A+A P  +L L   +A A   
Sbjct: 240 DLQQEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQASAKP--VLVLCFNRALA--- 294

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
                                   K+ G   +K    K              + V+T H+
Sbjct: 295 -----------------------QKLTGWMEHKGLSQK--------------VSVRTFHS 317

Query: 139 FCEAIMQQFPL--EANITSHFAIADEEQSKKLIEEAKKST---------LASIMLDNNEE 187
           +C  +   + L   A          +E    L++                +++++D   +
Sbjct: 318 WCVEMATTYQLGKLAGRR-------DEDYAALVQNVIDGVNRGQVPAGQYSALLIDEGHD 370

Query: 188 LKKAFYEILEISNDEDIETLI------SDIISNRTALKLIFFFFSYLWR 230
              A+  ++    D +  +++       DI      LK  F       R
Sbjct: 371 FDPAWLRLVVQMVDPESNSVLVMYDSAQDIYQKSRKLKFSFSSVGIQAR 419


>gi|290959977|ref|YP_003491159.1| hypothetical protein SCAB_55921 [Streptomyces scabiei 87.22]
 gi|260649503|emb|CBG72618.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 765

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 8   QEHSETI-DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           Q  S T+ D+++  ++EQ L+   P  S  +V    G+GKT + + R   LL
Sbjct: 215 QARSHTMRDIVASIQAEQDLVIRAPAASVTYVEGGPGTGKTAVALHRAAYLL 266


>gi|258540157|ref|YP_003174656.1| DNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|257151833|emb|CAR90805.1| DNA helicase [Lactobacillus rhamnosus Lc 705]
          Length = 763

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++        +V   AGSGKT  ++QRV  LL
Sbjct: 210 QREQNQIIRDTKADLLFVQGAAGSGKTSAVLQRVAYLL 247


>gi|254555531|ref|YP_003061948.1| DNA helicase (putative) [Lactobacillus plantarum JDM1]
 gi|254044458|gb|ACT61251.1| DNA helicase (putative) [Lactobacillus plantarum JDM1]
          Length = 769

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q  +   ++++  + EQ  +  D T    V    AGSGKT  ++QR+  LL
Sbjct: 200 QNDAYMQNIVATIQKEQNDIIRDTTSDLLVVQGVAGSGKTSAILQRIAFLL 250


>gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
          SBW25]
 gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
          SBW25]
          Length = 628

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 6  SFQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
          +     E       T  +Q    A    R   V+A  G+GKT      +L  L  N HP 
Sbjct: 11 ALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPD 70

Query: 64 ----------TLLCLTHTKAAAA 76
                     +L LT T+  AA
Sbjct: 71 KSQRHGPRQPRVLVLTPTRELAA 93


>gi|239629837|ref|ZP_04672868.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301066959|ref|YP_003788982.1| superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
 gi|239527449|gb|EEQ66450.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300439366|gb|ADK19132.1| Superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
          Length = 763

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++        +V   AGSGKT  ++QRV  LL
Sbjct: 210 QREQNQIIRDTKADLLFVQGAAGSGKTSAVLQRVAYLL 247


>gi|199599142|ref|ZP_03212546.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|199589965|gb|EDY98067.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
          Length = 763

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++        +V   AGSGKT  ++QRV  LL
Sbjct: 210 QREQNQIIRDTKADLLFVQGAAGSGKTSAVLQRVAYLL 247


>gi|191638919|ref|YP_001988085.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|190713221|emb|CAQ67227.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|327386156|gb|AEA57630.1| Predicted helicase [Lactobacillus casei BD-II]
          Length = 763

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++        +V   AGSGKT  ++QRV  LL
Sbjct: 210 QREQNQIIRDTKADLLFVQGAAGSGKTSAVLQRVAYLL 247


>gi|172040756|ref|YP_001800470.1| type I restriction-modification system, restriction subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171852060|emb|CAQ05036.1| type I restriction-modification system, restriction subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 1045

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 35  WVSANAGSGKTHI---LVQRVLRLLLANAH--PSTLLCLT 69
            +  +AGSGKT     L  R++R +  +      +++ +T
Sbjct: 326 LIEHSAGSGKTKTIAWLAHRLIRHVAEDGQKTFDSVIVVT 365


>gi|70984729|ref|XP_747871.1| tRNA-splicing endonuclease [Aspergillus fumigatus Af293]
 gi|66845498|gb|EAL85833.1| tRNA-splicing endonuclease, putative [Aspergillus fumigatus Af293]
          Length = 2076

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 30/165 (18%)

Query: 2    IYHNSFQEHSETIDLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
            I H S        D  +   ++      A D      +    GSGKT  +V  V  LL  
Sbjct: 1276 ILHYSDASLKPIADNYNVNPAQAKAIKSALDNDAFTLIQGPPGSGKTKTIVALVGALLSN 1335

Query: 59   -----NAHPST------------------LLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
                     S                   LL    + AA  E+  R  E +       ++
Sbjct: 1336 VLGDQGVTISRPTGVTNPRVPGRTTTSKKLLVCAPSNAAVDELVMRFKEGVKTIHGRHEK 1395

Query: 96   ILSAEITKIQGKKPNKSDMSKARHLLITILETP----GGLKVQTI 136
            +    + +      N  D++    +   + + P    G   +QTI
Sbjct: 1396 LNVIRLGRSDAINTNVLDVTLDELVNARLSQNPRKDSGERDLQTI 1440


>gi|258508970|ref|YP_003171721.1| DNA helicase [Lactobacillus rhamnosus GG]
 gi|257148897|emb|CAR87870.1| DNA helicase [Lactobacillus rhamnosus GG]
 gi|259650263|dbj|BAI42425.1| DNA and RNA helicase [Lactobacillus rhamnosus GG]
          Length = 763

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q +  Q++        +V   AGSGKT  ++QRV  LL
Sbjct: 210 QREQNQIIRDTKADLLFVQGAAGSGKTSAVLQRVAYLL 247


>gi|226951859|ref|ZP_03822323.1| exonuclease V alpha subunit [Acinetobacter sp. ATCC 27244]
 gi|226837399|gb|EEH69782.1| exonuclease V alpha subunit [Acinetobacter sp. ATCC 27244]
          Length = 601

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            ++   G+GKT+ L  R++  L        +     T  AA  M   +         ++ 
Sbjct: 163 IITGGPGTGKTYTLA-RIIAALNQMIPDIRIAMAAPTGKAAQRMQEALQNSFNDPKLIAS 221

Query: 95  EILSAEITKIQGKKPNK 111
            +++ E+     +  ++
Sbjct: 222 GLVTDELRNQSTQTLHR 238


>gi|199597816|ref|ZP_03211242.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|199591252|gb|EDY99332.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
          Length = 762

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 8   QEHSETIDLISQTKSEQ-LLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           Q      ++++  + EQ  +  D +    V    AGSGKT  ++QRV  LL
Sbjct: 196 QSDEYMKNIVATIQREQNDIIRDTSSDLLVVQGVAGSGKTSAVLQRVAYLL 246


>gi|159122655|gb|EDP47776.1| tRNA-splicing endonuclease, putative [Aspergillus fumigatus A1163]
          Length = 2076

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 30/165 (18%)

Query: 2    IYHNSFQEHSETIDLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58
            I H S        D  +   ++      A D      +    GSGKT  +V  V  LL  
Sbjct: 1276 ILHYSDASLKPIADNYNVNPAQAKAIKSALDNDAFTLIQGPPGSGKTKTIVALVGALLSN 1335

Query: 59   -----NAHPST------------------LLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
                     S                   LL    + AA  E+  R  E +       ++
Sbjct: 1336 VLGDQGVTISRPTGVTNPRVPGRTTTSKKLLVCAPSNAAVDELVMRFKEGVKTIHGRHEK 1395

Query: 96   ILSAEITKIQGKKPNKSDMSKARHLLITILETP----GGLKVQTI 136
            +    + +      N  D++    +   + + P    G   +QTI
Sbjct: 1396 LNVIRLGRSDAINTNVLDVTLDELVNARLSQNPRKDSGERDLQTI 1440


>gi|21221397|ref|NP_627176.1| helicase protein [Streptomyces coelicolor A3(2)]
 gi|6911982|emb|CAB72198.1| putative helicase protein [Streptomyces coelicolor A3(2)]
          Length = 744

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ  +   P  S  +V    G+GKT + + R   LL
Sbjct: 200 DIVASIQAEQDRVIRAPAASVTYVEGGPGTGKTAVALHRAAYLL 243


>gi|301780620|ref|XP_002925722.1| PREDICTED: LOW QUALITY PROTEIN: peroxisomal proliferator-activated
           receptor A-interacting complex 285 kDa protein-like
           [Ailuropoda melanoleuca]
          Length = 2910

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + P     +    G+GKT+ L   +  L +     + +L  THT +AA
Sbjct: 768 TRPIAPLLIYGPFGTGKTYTLA--MASLEVIRQPHTRVLICTHTNSAA 813


>gi|206889261|ref|YP_002249826.1| CRISPR-associated helicase Cas3 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741199|gb|ACI20256.1| CRISPR-associated helicase Cas3 [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 728

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90
            +S  + A+ G+GKT           +       LL +   + A  EM  R  +I     
Sbjct: 234 DKSVVLVASTGTGKTE-----YSMNWINGQKAFYLLGI---RTAVNEMYRRFKDIFGENV 285

Query: 91  HLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            L    +S  I     ++     +  AR L
Sbjct: 286 SLLHGEISNIIEDDDTEERYVERIETARKL 315


>gi|167899811|ref|ZP_02487212.1| hypothetical protein Bpse7_39170 [Burkholderia pseudomallei 7894]
          Length = 460

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLC 67
                + +  R   +   AGSGKT+ L +R+  LL  N   P  +  
Sbjct: 172 DAAAASLNAGRPLLIYGPAGSGKTY-LAERLGSLLRGNVPIPYAIYA 217


>gi|134101642|ref|YP_001107303.1| superfamily protein I DNA/RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003190|ref|ZP_06561163.1| superfamily protein I DNA/RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914265|emb|CAM04378.1| similar to superfamily I DNA and RNA helicases and helicase
           subunits [Saccharopolyspora erythraea NRRL 2338]
          Length = 1774

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
           ++ T+ + + A D      V    G+GKTH     +  LL        +L   HT  A  
Sbjct: 365 VNDTQLKIIKAVDRKAQILVQGPPGTGKTHTAAALLSHLLARG---KRVLVTAHTDRALR 421

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQ------GKKPNKSDMSKARHLLITILETPGG 130
           E+  ++ + I   S         ++  ++        + +  D ++A   +   L+    
Sbjct: 422 EVRDKLPDAIKPLSVAVVGSSREDMADLKTAVEYIASRASDHDPAEANQTVQNCLDRIEK 481

Query: 131 LK 132
           L+
Sbjct: 482 LR 483


>gi|296165012|ref|ZP_06847567.1| ATP-dependent helicase HrpA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295899660|gb|EFG79111.1| ATP-dependent helicase HrpA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 1302

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL    +  ++  +       V A   GSGKT  L        R +R  + +  P  L  
Sbjct: 67  DLPVSERRREIADAVRANQVVVVAGETGSGKTTQLPKICLEAGRGVRGTIGHTQPRRLAA 126

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E+   + E +      +D++    + K+       +++ + R LL 
Sbjct: 127 RTVAQRIADELGSPLGEAVGYSVRFTDQVSDRTLVKLMTDGILLAEIQRDRRLLR 181


>gi|212693114|ref|ZP_03301242.1| hypothetical protein BACDOR_02621 [Bacteroides dorei DSM 17855]
 gi|212664219|gb|EEB24791.1| hypothetical protein BACDOR_02621 [Bacteroides dorei DSM 17855]
          Length = 1327

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 16  LISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74
            ++  + E +  A      A +    G+GKT ++ + + + +L     S +L  + T  A
Sbjct: 821 FLNDKQLEAVAKAVSAPDIAIIQGPPGTGKTTVIAEIIWQQILKKPD-SKILLTSQTNLA 879

Query: 75  AAEMSHRVLEI 85
                 R+   
Sbjct: 880 VDNALERLQGR 890


>gi|297204947|ref|ZP_06922344.1| DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197711727|gb|EDY55761.1| DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 501

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 22 SEQLLASDPTR---SAWVSANAGSGKTHILV 49
           EQ  A+D  R      + A AG+GKT  L 
Sbjct: 5  DEQTAAADGFRAGDHIALQAGAGTGKTTTLT 35


>gi|297200048|ref|ZP_06917445.1| helicase [Streptomyces sviceus ATCC 29083]
 gi|197710521|gb|EDY54555.1| helicase [Streptomyces sviceus ATCC 29083]
          Length = 815

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 8   QEHSETI-DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           Q  S T+ D+++  ++EQ ++   P  S  +V    G+GKT + + R   LL
Sbjct: 215 QARSHTMRDIVASIQAEQDMVIRAPAASVTYVEGGPGTGKTAVALHRAAYLL 266


>gi|159039992|ref|YP_001539245.1| hypothetical protein Sare_4482 [Salinispora arenicola CNS-205]
 gi|157918827|gb|ABW00255.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 680

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + ++L+ +D   S  V    G+GKT + + R   LL
Sbjct: 183 QPEQDELVRADLDTSICVQGAPGTGKTAVGLHRAAYLL 220


>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 431

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----AHPSTLLCLTH 70
           D  S  +++ + A    +    +A  G+GKT      +L LL+      A+ + +L LT 
Sbjct: 22  DTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPILELLIPGKLAQANQARVLILTP 81

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T+    E++ +V E +  +     + L      + G       M K R  +  ++ TPG 
Sbjct: 82  TR----ELAAQVGESVATYG----KNLPLRSAVVFGGVKINPQMMKLRQGVDVLVATPGR 133

Query: 131 L 131
           L
Sbjct: 134 L 134


>gi|326565747|gb|EGE15909.1| exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis BC1]
          Length = 685

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 16  LISQTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-T 71
           L +   +EQ  A           ++   G+GKT  + Q V+ L   + H    L L   T
Sbjct: 243 LPNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPT 302

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
             AA  MS  +L+ +   + +        I ++ G   N S    A++ L
Sbjct: 303 GKAAQRMSESLLKSLDKANDIQLPK-PKTIHRLLGIGANGSPRYDAKNQL 351


>gi|291453265|ref|ZP_06592655.1| ATP/GTP binding protein [Streptomyces albus J1074]
 gi|291356214|gb|EFE83116.1| ATP/GTP binding protein [Streptomyces albus J1074]
          Length = 677

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ        S    V    G+GKT + + RV  LL
Sbjct: 168 DIVATIQPEQDEIVRSGLSGTVCVQGGPGTGKTAVGLHRVAYLL 211


>gi|262377807|ref|ZP_06071023.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262307255|gb|EEY88402.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 709

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           AGSGKT +L ++V  L     +P   + +T 
Sbjct: 212 AGSGKTIVLARKVAYL--HAKNPDWKIAVTF 240


>gi|237508039|ref|ZP_04520754.1| AAA ATPase [Burkholderia pseudomallei MSHR346]
 gi|235000244|gb|EEP49668.1| AAA ATPase [Burkholderia pseudomallei MSHR346]
          Length = 460

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLC 67
                + +  R   +   AGSGKT+ L +R+  LL  N   P  +  
Sbjct: 172 DAAAASLNAGRPLLIYGPAGSGKTY-LAERLGSLLRGNVPIPYAIYA 217


>gi|162415399|gb|ABX89248.1| polyprotein [Tomato chlorosis virus]
          Length = 1945

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 39   NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
              G+GKT  +V+ ++R + +N      L LT T A   E+ H++ +
Sbjct: 1647 PPGAGKTTTIVRNMVRDIKSNV---RCLALTCTNAGKKEIIHKLRK 1689


>gi|326793250|ref|YP_004311071.1| ATP-dependent DNA helicase replicase [Clostridium lentocellum DSM
           5427]
 gi|326544014|gb|ADZ85873.1| ATP-dependent DNA helicase replicase [Clostridium lentocellum DSM
           5427]
          Length = 738

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL----LANAHPSTLLCL 68
           K + ++  +      +    AGSGKT I + R+  LL            ++ +
Sbjct: 210 KEQDMIIRNKGNDVLIVQGVAGSGKTSIAMHRIAFLLYERMAEGLTSDNIMII 262


>gi|126641200|ref|YP_001084184.1| putative helicase [Acinetobacter baumannii ATCC 17978]
          Length = 474

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          ++  ++   GSGKT +L   + R +  NA  S  L L+ 
Sbjct: 27 KNLVINVPPGSGKTELLTNLIARGIARNAR-SRFLYLSF 64


>gi|327402000|ref|YP_004342839.1| DNA helicase [Archaeoglobus veneficus SNP6]
 gi|327317508|gb|AEA48124.1| DNA helicase [Archaeoglobus veneficus SNP6]
          Length = 664

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANA-GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           +++++ E +  +  +R  ++     G+GKT  L + +L+ +      + +L    +  A 
Sbjct: 171 LNESQREAVSLALGSRDFFLIHGPFGTGKTRTLTELILQEVKRG---NKVLATAESNVAV 227

Query: 76  AEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
             +  R+     L  +   S +S  ++ + I     K    +   K R     ++    
Sbjct: 228 DNLVERLAGKVRLVRLGHPSRISRHLIESSIFFQVEKHERFAKAEKLRDEAEKLIRQRD 286


>gi|326577195|gb|EGE27089.1| exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis O35E]
          Length = 685

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 16  LISQTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-T 71
           L +   +EQ  A           ++   G+GKT  + Q V+ L   + H    L L   T
Sbjct: 243 LPNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPT 302

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
             AA  MS  +L+ +   + +        I ++ G   N S    A++ L
Sbjct: 303 GKAAQRMSESLLKSLDKANDIQLPK-PKTIHRLLGIGANGSPRYDAKNQL 351


>gi|326570397|gb|EGE20437.1| exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis BC8]
          Length = 685

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 16  LISQTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-T 71
           L +   +EQ  A           ++   G+GKT  + Q V+ L   + H    L L   T
Sbjct: 243 LPNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPT 302

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
             AA  MS  +L+ +   + +        I ++ G   N S    A++ L
Sbjct: 303 GKAAQRMSESLLKSLDKANDIQLPK-PKTIHRLLGIGANGSPRYDAKNQL 351


>gi|326564875|gb|EGE15079.1| exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis
           12P80B1]
          Length = 685

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 16  LISQTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-T 71
           L +   +EQ  A           ++   G+GKT  + Q V+ L   + H    L L   T
Sbjct: 243 LPNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPT 302

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
             AA  MS  +L+ +   + +        I ++ G   N S    A++ L
Sbjct: 303 GKAAQRMSESLLKSLDKANDIQLPK-PKTIHRLLGIGANGSPRYDAKNQL 351


>gi|326560348|gb|EGE10735.1| exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis
           46P47B1]
          Length = 685

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 16  LISQTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-T 71
           L +   +EQ  A           ++   G+GKT  + Q V+ L   + H    L L   T
Sbjct: 243 LPNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPT 302

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
             AA  MS  +L+ +   + +        I ++ G   N S    A++ L
Sbjct: 303 GKAAQRMSESLLKSLDKANDIQLPK-PKTIHRLLGIGANGSPRYDAKNQL 351


>gi|255544057|ref|XP_002513091.1| conserved hypothetical protein [Ricinus communis]
 gi|223548102|gb|EEF49594.1| conserved hypothetical protein [Ricinus communis]
          Length = 1492

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            V    G+GKT   VQ VL +L  N      L +TH+  A  ++  ++++      +L  
Sbjct: 849 MVVGPPGTGKTDTAVQ-VLNVLYHNCTSQRTLIITHSNQALNDLFEKIMQRDVPARYL-- 905

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
            +   +  +      + S   +   +L+  LE  G 
Sbjct: 906 -LRLGQGEQELATDLDFSRQGRVNAMLVRRLELLGE 940


>gi|78060308|ref|YP_366883.1| Flp pilus assembly protein ATPase CpaF [Burkholderia sp. 383]
 gi|77964858|gb|ABB06239.1| Flp pilus assembly protein ATPase CpaF [Burkholderia sp. 383]
          Length = 455

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 28/146 (19%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           YH+     +E +D +S+ K           +  VS   GSGKT +L       +L+   P
Sbjct: 207 YHSLTPPMAELLDALSRAK----------INVLVSGGTGSGKTTLL------NILSGYIP 250

Query: 63  STLLCLTHTKAAAAEMSH----RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
                +T   AA  ++      R+           +      +      +P++  + + R
Sbjct: 251 RNERIVTIEDAAELQLQQPHVLRLETRPPNIEGKGEITQRTLVRNALRMRPDRIILGEVR 310

Query: 119 HLLITILETPGGLKVQ------TIHA 138
                 L+    +         TIHA
Sbjct: 311 G--AEALDMLNAMNTGHEGSLATIHA 334


>gi|256787419|ref|ZP_05525850.1| helicase protein [Streptomyces lividans TK24]
 gi|289771318|ref|ZP_06530696.1| helicase [Streptomyces lividans TK24]
 gi|289701517|gb|EFD68946.1| helicase [Streptomyces lividans TK24]
          Length = 778

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ  +   P  S  +V    G+GKT + + R   LL
Sbjct: 234 DIVASIQAEQDRVIRAPAASVTYVEGGPGTGKTAVALHRAAYLL 277


>gi|302525917|ref|ZP_07278259.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
 gi|302434812|gb|EFL06628.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
          Length = 745

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQ-LLASDPTRSAWVSANA-GSGKTHILVQRVLRLL 56
           E  D+++  ++EQ  +   P     V   A G+GKT + + R   LL
Sbjct: 181 EMADIVATIQAEQDRIIRAPLGGVMVVQGAPGTGKTAVALHRAAYLL 227


>gi|195015717|ref|XP_001984259.1| GH15109 [Drosophila grimshawi]
 gi|193897741|gb|EDV96607.1| GH15109 [Drosophila grimshawi]
          Length = 1003

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
              +  ++  AG+GKT +LV+R+L  L +   
Sbjct: 476 RQGNVLLTGAAGTGKT-VLVERILEQLASQPD 506


>gi|193076860|gb|ABO11582.2| putative helicase [Acinetobacter baumannii ATCC 17978]
          Length = 508

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          ++  ++   GSGKT +L   + R +  NA  S  L L+ 
Sbjct: 61 KNLVINVPPGSGKTELLTNLIARGIARNAR-SRFLYLSF 98


>gi|189183458|ref|YP_001937243.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180229|dbj|BAG40009.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 432

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N        I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 328 VYYNDIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 382

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 383 HKLATNRR-QKVIGLAPTHKAVSELRSK 409


>gi|145355574|ref|XP_001422034.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582273|gb|ABP00328.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 691

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 20/119 (16%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM--------S 79
            DP R   +    G GKT  L   + +   A     ++        AA E+         
Sbjct: 93  VDPPRGVLLHGPPGCGKT-TLAHAIAQ--EAKVPFFSI--------AATEIVSGMSGESE 141

Query: 80  HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138
            ++ E+  + +  +  ++  +       K   +     R ++  +L +   L+  TI  
Sbjct: 142 AKIRELFQSAAAHAPSLIFIDEIDAIVPKRESAQREMERRIVAQLLASMDDLQ-STIDG 199


>gi|92117525|ref|YP_577254.1| superfamily I DNA/RNA helicase-like protein [Nitrobacter
          hamburgensis X14]
 gi|91800419|gb|ABE62794.1| Superfamily I DNA and RNA helicases-like protein [Nitrobacter
          hamburgensis X14]
          Length = 504

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 34 AWVSANAGSGKTH--ILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
            + A AG GKTH   L       + A      LL LTHT AA +  + R+  
Sbjct: 17 VVIEAPAGCGKTHQGAL---FAAEIAARNKRGRLLILTHTHAARSVFADRIQS 66


>gi|126444559|ref|YP_001064074.1| hypothetical protein BURPS668_A3083 [Burkholderia pseudomallei 668]
 gi|167725245|ref|ZP_02408481.1| hypothetical protein BpseD_39866 [Burkholderia pseudomallei DM98]
 gi|167851180|ref|ZP_02476688.1| hypothetical protein BpseB_38431 [Burkholderia pseudomallei B7210]
 gi|254182585|ref|ZP_04889179.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|254187136|ref|ZP_04893651.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192565|ref|ZP_04899004.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|126224050|gb|ABN87555.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
 gi|157934819|gb|EDO90489.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169649323|gb|EDS82016.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|184213120|gb|EDU10163.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 460

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLC 67
                + +  R   +   AGSGKT+ L +R+  LL  N   P  +  
Sbjct: 172 DAAAASLNAGRPLLIYGPAGSGKTY-LAERLGSLLRGNVPIPYAIYA 217


>gi|116514730|ref|YP_813636.1| superfamily I DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116094045|gb|ABJ59198.1| Superfamily I DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 759

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D T     V   AGSGKT  ++QR+  LL
Sbjct: 212 KEQNKIIRDTTSDLLFVQGAAGSGKTSAILQRIAFLL 248


>gi|53723205|ref|YP_112190.1| hypothetical protein BPSS2188 [Burkholderia pseudomallei K96243]
 gi|76817362|ref|YP_336467.1| hypothetical protein BURPS1710b_A1310 [Burkholderia pseudomallei
           1710b]
 gi|126458340|ref|YP_001076987.1| hypothetical protein BURPS1106A_A2958 [Burkholderia pseudomallei
           1106a]
 gi|167744173|ref|ZP_02416947.1| hypothetical protein Bpse14_39238 [Burkholderia pseudomallei 14]
 gi|167821372|ref|ZP_02453052.1| hypothetical protein Bpse9_39998 [Burkholderia pseudomallei 91]
 gi|167829713|ref|ZP_02461184.1| hypothetical protein Bpseu9_38900 [Burkholderia pseudomallei 9]
 gi|167916474|ref|ZP_02503565.1| hypothetical protein Bpse112_38737 [Burkholderia pseudomallei 112]
 gi|167924330|ref|ZP_02511421.1| hypothetical protein BpseBC_37588 [Burkholderia pseudomallei
           BCC215]
 gi|217424172|ref|ZP_03455671.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|226193993|ref|ZP_03789594.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242312580|ref|ZP_04811597.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|254265288|ref|ZP_04956153.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
 gi|254296483|ref|ZP_04963939.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|52213619|emb|CAH39673.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|76581835|gb|ABA51309.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b]
 gi|126232108|gb|ABN95521.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a]
 gi|157806523|gb|EDO83693.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|217392637|gb|EEC32660.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|225933938|gb|EEH29924.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242135819|gb|EES22222.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|254216290|gb|EET05675.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
          Length = 460

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLC 67
                + +  R   +   AGSGKT+ L +R+  LL  N   P  +  
Sbjct: 172 DAAAASLNAGRPLLIYGPAGSGKTY-LAERLGSLLRGNVPIPYAIYA 217


>gi|302544962|ref|ZP_07297304.1| I DNA or RNA helicase [Streptomyces hygroscopicus ATCC 53653]
 gi|302462580|gb|EFL25673.1| I DNA or RNA helicase [Streptomyces himastatinicus ATCC 53653]
          Length = 826

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 15  DLISQTKSEQ-LLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCL 68
           D+++  ++EQ L+   P  S   V    G+GKT + + R   LL  +       +L +
Sbjct: 242 DIVASIQAEQDLVIRAPAASVTEVEGGPGTGKTAVALHRAAYLLYQDRRRYAGGILVV 299


>gi|289806007|ref|ZP_06536636.1| putative DNA helicase [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 74

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
            +  + +       V A AGSGKT  L +R             +L + + +A
Sbjct: 1  PEQAAVIAWKGERLVVCAFAGSGKTTTL-RRYA----EENPTERMLYIAYNRA 48


>gi|257059996|ref|YP_003137884.1| hypothetical protein Cyan8802_2162 [Cyanothece sp. PCC 8802]
 gi|256590162|gb|ACV01049.1| conserved hypothetical protein [Cyanothece sp. PCC 8802]
          Length = 710

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           AGSGKT +L  +V  L     HP   + +T 
Sbjct: 214 AGSGKTIVLALKVAYL--HAIHPDWNIAITF 242


>gi|189183263|ref|YP_001937048.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189183302|ref|YP_001937087.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180034|dbj|BAG39814.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180073|dbj|BAG39853.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 438

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N        I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 334 VYYNDIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 388

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 389 HKLATNRR-QKVIGLAPTHKAVSELRSK 415


>gi|38505705|ref|NP_942325.1| hypothetical protein slr7037 [Synechocystis sp. PCC 6803]
 gi|38423729|dbj|BAD01939.1| slr7037 [Synechocystis sp. PCC 6803]
          Length = 958

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81
            + +LA+  +R   + A  G+GKT  L Q+V + +        ++ LTH +  A E++ R
Sbjct: 308 DQDILANVTSRLVGIKAAKGTGKTEALAQQVQQAIAKGLP---VIVLTHREQLAKELAQR 364


>gi|319647752|ref|ZP_08001970.1| YvgS protein [Bacillus sp. BT1B_CT2]
 gi|317390093|gb|EFV70902.1| YvgS protein [Bacillus sp. BT1B_CT2]
          Length = 779

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q +  Q++ ++ +R   V   AGSGKT   +QR   LL   
Sbjct: 217 QKEQNQIIRNEKSRFLIVRGAAGSGKTSAALQRAAYLLYRG 257


>gi|300811749|ref|ZP_07092222.1| putative Helicase IV [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497248|gb|EFK32297.1| putative Helicase IV [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 759

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D T     V   AGSGKT  ++QR+  LL
Sbjct: 212 KEQNKIIRDTTSDLLFVQGAAGSGKTSAILQRIAFLL 248


>gi|257093828|ref|YP_003167469.1| CRISPR-associated helicase Cas3 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046352|gb|ACV35540.1| CRISPR-associated helicase Cas3 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 871

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLLLANAHPSTLL 66
           Q+ + T         +  +  D      +  +  GSGKT   + R L+L  A    S   
Sbjct: 266 QDFARTFGGFPPHPIQAAMGDDTLGPLVILESETGSGKTEAALWRYLQLFRAGEVDSLYF 325

Query: 67  CLTHTKAAAAEMSHRVLEIITA-WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
            L  T+ AA ++  RV + +   W       L A    +         +   + L    L
Sbjct: 326 ALP-TRVAAGQLYKRVQDTLDRLWPENPPLALRALPGYVAADGQEAKALPDFKVLWSDDL 384

Query: 126 ETPGG 130
                
Sbjct: 385 NDQAA 389


>gi|237730236|ref|ZP_04560717.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905775|gb|EEH91693.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 356

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92
          +  + A AGS KT  ++    R+         +L LT T+    E+ +R+       SH+
Sbjct: 3  NELILAVAGSRKTQGIIDHCARI--DGQK--RVLVLTFTQFNQNEIRNRLSHCAGNSSHI 58

Query: 93 S 93
           
Sbjct: 59 E 59


>gi|241949191|ref|XP_002417318.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223640656|emb|CAX44951.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 711

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 5   NSFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-- 61
           N+  E++   D ++ ++ + +  A + +    +    G+GKT+ L++ + +L        
Sbjct: 212 NNHGENNFFNDQLNASQRQAIEFAINDSNITIIHGPPGTGKTYTLIELIQQLTSKGEKVL 271

Query: 62  ---PSTL 65
              PS +
Sbjct: 272 VCGPSNI 278


>gi|165975825|ref|YP_001651418.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875926|gb|ABY68974.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 1299

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 49/201 (24%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL------- 120
            +     A E+   +   +      +D++    + K+       +++   R+L       
Sbjct: 145 RSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYLNQYDTLI 204

Query: 121 -----------------LITILETPGGLKV----QTIH------AFCEA-IM----QQFP 148
                            L  IL     LKV     TI        F  A I+    + FP
Sbjct: 205 IDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSRHFNNAPIIEVSGRTFP 264

Query: 149 LEANITSHFAIADEEQSKKLI 169
           +E        + +EE   +L 
Sbjct: 265 VEVRYRP---VVEEEDQDQLQ 282


>gi|110637960|ref|YP_678167.1| DNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280641|gb|ABG58827.1| DNA helicase [Cytophaga hutchinsonii ATCC 33406]
          Length = 611

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 39  NAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85
             G+GKT  +V+ V  L+        +L    + AA   ++ R+   
Sbjct: 191 PPGTGKTTTIVEIVKTLIEKG---ERVLVCASSNAAVDVLTERLAAR 234


>gi|59713318|ref|YP_206093.1| DNA helicase II [Vibrio fischeri ES114]
 gi|59481566|gb|AAW87205.1| DNA helicase II [Vibrio fischeri ES114]
          Length = 620

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 8   QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
            +H   I  I   + EQL  S       +   AGSGKT IL  R L L      P  +L 
Sbjct: 233 NDHIPEIIKIMDIQQEQLARSLGDGHRVIHGVAGSGKTLILGYRCLHLAEQLKKP--ILV 290

Query: 68  LTH--TKAA 74
           L    T AA
Sbjct: 291 LCFNITLAA 299


>gi|52081834|ref|YP_080625.1| putative DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52787223|ref|YP_093052.1| YvgS [Bacillus licheniformis ATCC 14580]
 gi|52005045|gb|AAU24987.1| putative DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52349725|gb|AAU42359.1| YvgS [Bacillus licheniformis ATCC 14580]
          Length = 776

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q +  Q++ ++ +R   V   AGSGKT   +QR   LL   
Sbjct: 214 QKEQNQIIRNEKSRFLIVRGAAGSGKTSAALQRAAYLLYRG 254


>gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 433

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHT 71
           ++  + + + A    +    SA  G+GKT      +L+ ++ N        + +L LT T
Sbjct: 24  MTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSNARVLILTPT 83

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +    E++ +V + + A+S    + L+  +  I G    ++   K +     I+ TPG L
Sbjct: 84  R----ELAAQVADNVEAYS----KYLNFSVLTIYGGVKVETQAQKLKRGADIIVATPGRL 135


>gi|325126421|gb|ADY85751.1| probable ATP-dependent helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 759

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D T     V   AGSGKT  ++QR+  LL
Sbjct: 212 KEQNKIIRDTTSDLLFVQGAAGSGKTSAILQRIAFLL 248


>gi|295705977|ref|YP_003599052.1| hypothetical protein BMD_3869 [Bacillus megaterium DSM 319]
 gi|294803636|gb|ADF40702.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
          Length = 772

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 4   HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           HN+  +    +  I Q +  Q++ ++  +   V   AGSGKT   +QRV  LL
Sbjct: 198 HNASSQMKSIVATI-QKEQNQIIRNEKNKVLIVQGVAGSGKTSAALQRVAYLL 249


>gi|170078848|ref|YP_001735486.1| DEAD/DEAH box helicase protein [Synechococcus sp. PCC 7002]
 gi|169886517|gb|ACB00231.1| DEAD/DEAH box helicase protein [Synechococcus sp. PCC 7002]
          Length = 957

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKT 45
          + Q + + + A D  RS  V A  GSGKT
Sbjct: 13 LDQFQKQAIAALDADRSVVVCAPTGSGKT 41


>gi|260905995|ref|ZP_05914317.1| TrwC relaxase [Brevibacterium linens BL2]
          Length = 1152

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
             V   AGSGKT +L   +  L            +T TK AA
Sbjct: 466 VVVEGAAGSGKTTMLATAIEALDHDGRSVR---VVTPTKKAA 504


>gi|315444710|ref|YP_004077589.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263013|gb|ADT99754.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 735

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ      D      +    G+GKT + + RV  LL
Sbjct: 186 DIVATIQAEQDAIIRLDHPGVLVIEGGPGTGKTVVALHRVAYLL 229


>gi|303252608|ref|ZP_07338771.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648576|gb|EFL78769.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 1299

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            +     A E+   +   +      +D++    + K+       +++   R+L
Sbjct: 145 RSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYL 197


>gi|296113150|ref|YP_003627088.1| exodeoxyribonuclease V alpha subunit [Moraxella catarrhalis RH4]
 gi|295920844|gb|ADG61195.1| exodeoxyribonuclease V alpha subunit [Moraxella catarrhalis RH4]
          Length = 685

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 16  LISQTKSEQLLA---SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-T 71
           L +   +EQ  A           ++   G+GKT  + Q V+ L   + H    L L   T
Sbjct: 243 LPNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPT 302

Query: 72  KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121
             AA  MS  +L+ +   + +        I ++ G   N S    A++ L
Sbjct: 303 GKAAQRMSESLLKSLDKANDIQLPK-PKTIHRLLGIGENGSPRYDAKNQL 351


>gi|126179664|ref|YP_001047629.1| hypothetical protein Memar_1720 [Methanoculleus marisnigri JR1]
 gi|125862458|gb|ABN57647.1| conserved hypothetical protein [Methanoculleus marisnigri JR1]
          Length = 1259

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 20/164 (12%)

Query: 19  QTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL--CLTHTKA 73
            T+S+    S  T +    V    G+GKTH L   +L L+    AH   +       T A
Sbjct: 792 FTRSQNAAFSHVTENRLTLVWGPPGTGKTHFLATAILSLVKARRAHGERIRVGVAAFTHA 851

Query: 74  AAAEMSHRVLEIITAW---SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           A   +  +V   + A+   + L    L    T    +        +A  ++       GG
Sbjct: 852 AVENLLVKVQASVDAFGLTAGLPIYKLRDIRTAGGERSLEVLPHDRAETVVGYPALLLGG 911

Query: 131 LKVQTIHAFCEAIMQQFPLEANITS-HFAIADEEQSKKLIEEAK 173
               T+H F +       LE ++ S    I DE    +  E A 
Sbjct: 912 ----TVHGFAK-------LEKSLPSLDLLIVDEASQMRAAELAM 944


>gi|307136393|gb|ADN34203.1| aquarius [Cucumis melo subsp. melo]
          Length = 2201

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 15   DLISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
            + +  T ++        +     V    G+GKT   VQ VL +L  +      L +TH+ 
Sbjct: 1095 NSVRFTPTQVGAIISGVQPGLTMVVGPPGTGKTDTAVQ-VLNVLYHSCPSQRTLIITHSN 1153

Query: 73   AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119
             A  ++  +++E         D      +   QG++   +D+  +R 
Sbjct: 1154 QALNDLFEKIMER--------DVPARYLLRLGQGEQELATDLDFSRQ 1192


>gi|302544247|ref|ZP_07296589.1| putative DNA helicase [Streptomyces hygroscopicus ATCC 53653]
 gi|302461865|gb|EFL24958.1| putative DNA helicase [Streptomyces himastatinicus ATCC 53653]
          Length = 504

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 5  NSFQEHSETIDLISQTKSEQLLASDPTRS---AWVSANAGSGKTHIL 48
          +SF     T  L+     EQ+ A+D  RS     + A AG+GKT  L
Sbjct: 5  SSFYRPPPTEPLLHTPTHEQMHAADAFRSGRHLALQAGAGTGKTSTL 51


>gi|294629630|ref|ZP_06708190.1| I DNA or RNA helicase [Streptomyces sp. e14]
 gi|292832963|gb|EFF91312.1| I DNA or RNA helicase [Streptomyces sp. e14]
          Length = 811

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ L+   P  S  +V    G+GKT + + R   LL
Sbjct: 207 DIVASIQAEQDLVIRAPASSVTYVEGGPGTGKTAVALHRAAYLL 250


>gi|198277109|ref|ZP_03209640.1| hypothetical protein BACPLE_03317 [Bacteroides plebeius DSM 17135]
 gi|198269607|gb|EDY93877.1| hypothetical protein BACPLE_03317 [Bacteroides plebeius DSM 17135]
          Length = 1415

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 21/128 (16%)

Query: 34  AWVSANAGSGKTHILVQRVLRLLLANA--HPS-TLLCLTHTKAAAAEM------------ 78
             +    G+GKT       LR ++  A   P  ++L L++T  A  E+            
Sbjct: 697 FLLVGPPGTGKTSC----ALRFMVEEALSEPDTSILLLSYTNRAVDEICAMLTDSGIADR 752

Query: 79  --SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136
               R+   ++        +L   +         +  M++ R  + T       L + T+
Sbjct: 753 TPFIRIGNELSCDKRFVPYLLKYSLDDCPKLTDIQQKMARTRIFVGTTTAINNRLNLFTL 812

Query: 137 HAFCEAIM 144
             F  AI+
Sbjct: 813 KHFQLAII 820


>gi|169796539|ref|YP_001714332.1| hypothetical protein ABAYE2512 [Acinetobacter baumannii AYE]
 gi|301345589|ref|ZP_07226330.1| hypothetical protein AbauAB0_05078 [Acinetobacter baumannii
          AB056]
 gi|301512306|ref|ZP_07237543.1| hypothetical protein AbauAB05_12012 [Acinetobacter baumannii
          AB058]
 gi|301594818|ref|ZP_07239826.1| hypothetical protein AbauAB059_03377 [Acinetobacter baumannii
          AB059]
 gi|169149466|emb|CAM87354.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
          Length = 496

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          ++  ++   GSGKT +L   + R +  NA  S  L L+ 
Sbjct: 61 KNLVINVPPGSGKTELLTNLIARGIARNAR-SRFLYLSF 98


>gi|134281823|ref|ZP_01768530.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|167908127|ref|ZP_02495332.1| hypothetical protein BpseN_38246 [Burkholderia pseudomallei NCTC
           13177]
 gi|134246885|gb|EBA46972.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
          Length = 460

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 22  SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLC 67
                + +  R   +   AGSGKT+ L +R+  LL  N   P  +  
Sbjct: 172 DAAAASLNAGRPLLIYGPAGSGKTY-LAERLGSLLRGNVPIPYAIYA 217


>gi|254775218|ref|ZP_05216734.1| ATP-dependent helicase HrpA [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 1314

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHIL------VQRVLRLLLANAHPSTLLC 67
           DL    +  ++  +       V A   GSGKT  L        R +   + +  P  L  
Sbjct: 71  DLPVSERRREIADAIRAHQVVVIAGETGSGKTTQLPKICLEAGRGISGTIGHTQPRRLAA 130

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122
            T  +  A E+   + E +      +D++    + K+       +++ + R LL 
Sbjct: 131 RTVAQRIADELGSPLGETVGYTVRFTDQVSDRTLIKLMTDGILLAEIQRDRRLLR 185


>gi|290243069|ref|YP_003494739.1| superfamily I DNA/RNA helicase-like protein [Thioalkalivibrio sp.
          K90mix]
 gi|288945574|gb|ADC73272.1| superfamily I DNA/RNA helicase-like protein [Thioalkalivibrio sp.
          K90mix]
          Length = 519

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%)

Query: 17 ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74
          +  T  ++ +  S P  S  V A AG+ KT  L  R      A AHPS   L L     +
Sbjct: 1  MKPTAEQRKIIESSPHESLAVEAFAGAAKTTTLEWR------ARAHPSRRFLNLAF-NKS 53

Query: 75 AAE 77
            E
Sbjct: 54 VNE 56


>gi|213156346|ref|YP_002318766.1| putative helicase [Acinetobacter baumannii AB0057]
 gi|215484003|ref|YP_002326228.1| Terminase-like family protein [Acinetobacter baumannii
          AB307-0294]
 gi|213055506|gb|ACJ40408.1| putative helicase [Acinetobacter baumannii AB0057]
 gi|213986070|gb|ACJ56369.1| Terminase-like family protein [Acinetobacter baumannii
          AB307-0294]
          Length = 485

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
          ++  ++   GSGKT +L   + R +  NA  S  L L+ 
Sbjct: 50 KNLVINVPPGSGKTELLTNLIARGIARNAR-SRFLYLSF 87


>gi|158522107|ref|YP_001529977.1| type III restriction protein res subunit [Desulfococcus oleovorans
           Hxd3]
 gi|158510933|gb|ABW67900.1| type III restriction protein res subunit [Desulfococcus oleovorans
           Hxd3]
          Length = 889

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 12  ETIDLISQTKSEQLLASDPT-----RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66
           E I  +   + E + A +       ++  V+   G+GKT  LV  + RLL +  +   +L
Sbjct: 158 EDITRLRPYQKEAIAAIETAIGNGKKTMLVAMATGTGKTFTLVSSIYRLLKSG-YARRIL 216


>gi|111224113|ref|YP_714907.1| hypothetical protein FRAAL4723 [Frankia alni ACN14a]
 gi|111151645|emb|CAJ63364.1| conserved hypothetical protein; putative UvrD/REP helicase domain
           [Frankia alni ACN14a]
          Length = 877

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
             S+ ++ I Q + ++++ SD      V    G+GKT + + R   LL  +  
Sbjct: 172 RMSDIVETI-QAEQDRIIRSDHRGILVVQGGPGTGKTAVALHRAAYLLYTHRD 223


>gi|120403583|ref|YP_953412.1| putative helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119956401|gb|ABM13406.1| putative helicase [Mycobacterium vanbaalenii PYR-1]
          Length = 734

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ      D      +    G+GKT + + RV  LL
Sbjct: 184 DIVATIQAEQDAIIRLDHPGVLVIEGGPGTGKTVVALHRVAYLL 227


>gi|313124504|ref|YP_004034763.1| ATP-dependent helicase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312281067|gb|ADQ61786.1| ATP-dependent helicase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 759

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D T     V   AGSGKT  ++QR+  LL
Sbjct: 212 KEQNKIIRDTTSDLLFVQGAAGSGKTSAILQRIAFLL 248


>gi|229516083|ref|ZP_04405533.1| superfamily I DNA and RNA helicases [Vibrio cholerae RC9]
 gi|229346863|gb|EEO11831.1| superfamily I DNA and RNA helicases [Vibrio cholerae RC9]
          Length = 510

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRL 55
          L   T  + L+         V A AG+GKT  LV+        R+L L
Sbjct: 11 LPPDTPEQSLITQYKGPRLVVKAYAGTGKTTTLVKYAHNNLDSRILYL 58


>gi|189184580|ref|YP_001938365.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181351|dbj|BAG41131.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 670

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N        I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 334 VYYNDIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 388

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 389 HKLATNRR-QKVIGLAPTHKAVSELRSK 415


>gi|104774606|ref|YP_619586.1| putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423687|emb|CAI98657.1| Putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 759

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D T     V   AGSGKT  ++QR+  LL
Sbjct: 212 KEQNKIIRDTTSDLLFVQGAAGSGKTSAILQRIAFLL 248


>gi|325685429|gb|EGD27530.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 759

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           K +  +  D T     V   AGSGKT  ++QR+  LL
Sbjct: 212 KEQNKIIRDTTSDLLFVQGAAGSGKTSAILQRIAFLL 248


>gi|325294544|ref|YP_004281058.1| DNA helicase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064992|gb|ADY72999.1| DNA helicase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 721

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 20/113 (17%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA----------AEMS----- 79
            +    G+GKT  + + +++L+      + +L    +  AA          +E+      
Sbjct: 259 LIHGPPGTGKTSTITELIVQLVKRG---NKVLATADSNIAADNILLNLSKYSELKLVRIG 315

Query: 80  --HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
              RVLE +  +S  +      +  KI+       ++ + R      L     
Sbjct: 316 HPARVLEELEKFSIYTLYEEHEKTQKIKEGWERVRELIEKREQFTKPLPHLRR 368


>gi|313902377|ref|ZP_07835780.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965]
 gi|313467308|gb|EFR62819.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965]
          Length = 513

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 30/197 (15%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
            + + +D   S  +    GSGKT  L + + R   A+  P     +T   A   ++   V
Sbjct: 59  RRAIEADRLGSIILWGPPGSGKT-TLARIIARTTRAHFEPLN--AVT---AGVGDLRRVV 112

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            E    W+      L    T +   + ++ + ++   LL  +      L   T       
Sbjct: 113 EEARERWA------LEGRSTVLFVDEVHRWNRAQQDALLPHLESGLVALIGAT------- 159

Query: 143 IMQQFPLEANITSH------FAI--ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
              + P  A +         F +    ++  ++L+  A       +     E    A   
Sbjct: 160 --TENPYFACVPPLVSRARIFRLEPLSDDDMRQLLLRALADPERGLGRYRAEVDPAALEH 217

Query: 195 ILEISNDEDIETLISDI 211
           ++ ++   D  T ++ +
Sbjct: 218 LVRVAGG-DARTALNAL 233


>gi|312622195|ref|YP_004023808.1| hypothetical protein Calkro_1124 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202662|gb|ADQ45989.1| protein of unknown function DUF1156 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 964

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 20/150 (13%)

Query: 77  EMSHRVLEIITAWSHLSDEILSAEITKIQG-KKPNKSDMSKARHLLITILETPGGLKVQT 135
           E   R  + I A+   +  +  A+  ++   KK N + +  A  L   +L+T        
Sbjct: 820 EFETRGEKRIGAYQDAARSLGVADYDELFAIKKSNSARLKTASELGQELLDTK------- 872

Query: 136 IHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
            HAF   I++   F + + I     I D  ++  L  E  K+ L +   +N  +++  F 
Sbjct: 873 -HAFSTTILRYCLFAINSAIKKDQEINDTAEAVALSHEMLKTKLGTKYWNNKTKIEIIFR 931

Query: 194 EILEIS---------NDEDIETLISDIISN 214
            +  +          ND  I + +++ ++N
Sbjct: 932 YLARLEKIDGMEHWQNDSKIASYLAERVAN 961


>gi|309776646|ref|ZP_07671622.1| UvrD/REP helicase subfamily [Erysipelotrichaceae bacterium
          3_1_53]
 gi|308915606|gb|EFP61370.1| UvrD/REP helicase subfamily [Erysipelotrichaceae bacterium
          3_1_53]
          Length = 680

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66
          I+    +Q L S+      ++   GSGKT +L+ R   L+ +    P+ +L
Sbjct: 15 ITLDDKKQELVSELQHPLLINGTTGSGKTFLLLARNAYLMKVEEVSPTAIL 65


>gi|302206354|gb|ADL10696.1| ATP-dependent RNA helicase hrpA [Corynebacterium pseudotuberculosis
           C231]
 gi|308276596|gb|ADO26495.1| ATP-dependent RNA helicase hrpA [Corynebacterium pseudotuberculosis
           I19]
          Length = 1332

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           +L   ++ + +  +       + A   GSGKT  + +  L L      L+ +  P  L  
Sbjct: 103 NLPVSSQRDAIAQAITNNQVVIIAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAA 162

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            T  +  A E+  ++   +       D + ++   K+       ++M + R L
Sbjct: 163 RTVAERIAEELDQKIGSSVGYAIRFDDRVSASTSIKLMTDGILLAEMQRDRFL 215


>gi|182682922|ref|YP_001837046.1| putative replication origin binding protein [Enterobacteria phage
           EPS7]
 gi|182630634|gb|ACB97566.1| putative replication origin binding protein [Enterobacteria phage
           EPS7]
          Length = 929

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73
           +V A+ G+GKT      V + L A   P   + +T+T+A
Sbjct: 396 FVKASLGTGKTTA----VTKWLDAGVLPGNFIAITNTRA 430


>gi|170582101|ref|XP_001895978.1| hypothetical protein [Brugia malayi]
 gi|158596922|gb|EDP35183.1| conserved hypothetical protein [Brugia malayi]
          Length = 1443

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76
            +  + E + A        V    G+GKT + VQ ++  +  N      L +TH+  A  
Sbjct: 796 FTPAQVEAIKAGMQPGLTMVVGPPGTGKTDVAVQ-IISNIYHNWPEQRTLIVTHSNQALN 854

Query: 77  EMSHRVLEI 85
           ++  +++++
Sbjct: 855 QLFEKIIQL 863


>gi|15790306|ref|NP_280130.1| ATP-dependent helicase [Halobacterium sp. NRC-1]
 gi|169236039|ref|YP_001689239.1| Lhr-like helicase [Halobacterium salinarum R1]
 gi|10580778|gb|AAG19610.1| ATP-dependent helicase [Halobacterium sp. NRC-1]
 gi|167727105|emb|CAP13890.1| Lhr-like helicase [Halobacterium salinarum R1]
          Length = 946

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTL--LCLTHTKAA 74
          ++ +   + A    R+  V A  G+GKT   ++     L+     P     L +T  +A 
Sbjct: 32 TEPQRRAVPALADGRNGLVVAPTGTGKTETAMLPVFDALVSDGGPPDGFGALYVTPLRAL 91

Query: 75 AAEMSHRV 82
            +M  R+
Sbjct: 92 NRDMRERL 99


>gi|300858647|ref|YP_003783630.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686101|gb|ADK29023.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis FRC41]
 gi|302330910|gb|ADL21104.1| ATP-dependent RNA helicase hrpA [Corynebacterium pseudotuberculosis
           1002]
          Length = 1332

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           +L   ++ + +  +       + A   GSGKT  + +  L L      L+ +  P  L  
Sbjct: 103 NLPVSSQRDAIAQAITNNQVVIIAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAA 162

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            T  +  A E+  ++   +       D + ++   K+       ++M + R L
Sbjct: 163 RTVAERIAEELDQKIGSSVGYAIRFDDRVSASTSIKLMTDGILLAEMQRDRFL 215


>gi|270383749|dbj|BAI53130.1| putative regulator [Arthrobacter sp. IF1]
          Length = 1012

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 31 TRSAWVSANAGSGKTHILVQR-------VLRLLLANAH--PSTLLC 67
           R  WV+A AGSGKT  +VQ        +  L L      P  LL 
Sbjct: 43 NRVLWVAATAGSGKTTAVVQAATAWGGPIAWLTLDGTDAAPGRLLI 88


>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
 gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
          Length = 534

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 21  KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80
           ++E +      R A V A+ G+GKT      +L+ L+   H    L LT T+    E++ 
Sbjct: 39  QTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQGLVPYGHGPQALVLTPTR----ELAI 94

Query: 81  RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131
           +V E I          L A +  + G +P +  +   RH +  I+ TPG +
Sbjct: 95  QVAEAIHRLGR----YLDARVLALYGGQPIERQLRALRHPVDVIVGTPGRI 141


>gi|32035763|ref|ZP_00135626.1| COG1643: HrpA-like helicases [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126207849|ref|YP_001053074.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           L20]
 gi|126096641|gb|ABN73469.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 1299

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            +     A E+   +   +      +D++    + K+       +++   R+L
Sbjct: 145 RSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYL 197


>gi|254443238|ref|ZP_05056714.1| capsular exopolysaccharide family protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257546|gb|EDY81854.1| capsular exopolysaccharide family protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 808

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 35/152 (23%)

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130
           T  AAAEM             L  E L AEI++++GK+ +  + +    L          
Sbjct: 206 TNQAAAEM-----------LRLQAEQLQAEISELEGKQRDFRERNNVISLEENQDLLAER 254

Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190
           LK                    I ++  I  E +  +   E K   + + + ++      
Sbjct: 255 LK-------------------GIDAN-RI--EARLDRFRLETKLGNVKAALGEDGRPFDN 292

Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIF 222
            F  +   +N+E +   +  +   R  + L +
Sbjct: 293 PF--LANFANNERLRQELDKLNGQREVMALRY 322


>gi|188533813|ref|YP_001907610.1| ATP-dependent RNA helicase HrpA [Erwinia tasmaniensis Et1/99]
 gi|188028855|emb|CAO96717.1| ATP-dependent helicase [Erwinia tasmaniensis Et1/99]
          Length = 1299

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 54/245 (22%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHIL------VQRVLRLLLANAHPSTLLCLTH 70
           +SQ K E   A    +   V+   GSGKT  L      + R +R L+ +  P  L   T 
Sbjct: 79  VSQKKQEIADAISANQVVIVAGETGSGKTTQLPKICLELGRGIRGLIGHTQPRRLAARTV 138

Query: 71  TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL---------- 120
            +  AAE+   +   +      +D +      K+       +++ + R L          
Sbjct: 139 AERIAAELEISLGGSVGYKVRFNDRVGDTTQVKLMTDGILLAEIQQDRLLMQYDTIIIDE 198

Query: 121 --------------LITILETPGGLKV----QTIH------AFCEA-IM----QQFPLEA 151
                         L  +L     LKV     TI        F  A ++    + +P+E 
Sbjct: 199 AHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNAPVIEVSGRTYPVEV 258

Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211
                   AD+    +L  +A    +  +  ++  ++      ++ +S + +I    +D 
Sbjct: 259 RYRPVVEEADDGDRDQL--QAIFDAVDELGRESRGDI------LIFMSGEREIRD-TADA 309

Query: 212 ISNRT 216
           +S R 
Sbjct: 310 LSKRD 314


>gi|166365110|ref|YP_001657383.1| hypothetical protein MAE_23690 [Microcystis aeruginosa NIES-843]
 gi|166087483|dbj|BAG02191.1| hypothetical protein MAE_23690 [Microcystis aeruginosa NIES-843]
          Length = 698

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 40  AGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           AGSGKT +L  +V  L     HP   + +T 
Sbjct: 214 AGSGKTIVLALKVAYL--HATHPDWNIAVTF 242


>gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           amazonensis SB2B]
 gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B]
          Length = 432

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 25/145 (17%)

Query: 2   IYHNSFQEHSETIDLISQ------TKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVL 53
           +   S+    E +  +++      T  ++L      R   V A+A  G+GKT      +L
Sbjct: 1   MKFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 54  RLLLANAHPST-------LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106
           + LL              +L  T       E++ ++   I A++    + L   +T + G
Sbjct: 61  QKLLDTPKAREATKARALILAPT------RELTEQIANNIKAYA----KHLELAVTTVFG 110

Query: 107 KKPNKSDMSKARHLLITILETPGGL 131
                    K R     I+ TPG L
Sbjct: 111 GGKTDVQAQKLRKGTDIIVATPGRL 135


>gi|85090568|ref|XP_958479.1| hypothetical protein NCU07395 [Neurospora crassa OR74A]
 gi|28919845|gb|EAA29243.1| hypothetical protein NCU07395 [Neurospora crassa OR74A]
          Length = 716

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 17  ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67
           ++ ++ + +  A      A +    G+GKTH L++ +L+LL  +     +L 
Sbjct: 236 LNDSQKDAIRFALASREIALIHGPPGTGKTHTLIELILQLLRRDL---RILV 284


>gi|307256409|ref|ZP_07538191.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306865039|gb|EFM96940.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 1299

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            +     A E+   +   +      +D++    + K+       +++   R+L
Sbjct: 145 RSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYL 197


>gi|70733086|ref|YP_262859.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens
          Pf-5]
 gi|68347385|gb|AAY94991.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
          fluorescens Pf-5]
          Length = 622

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 12/77 (15%)

Query: 12 ETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS------ 63
          E       T  +Q    A    R   V+A  G+GKT      +L  L  N HP       
Sbjct: 17 EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHG 76

Query: 64 ----TLLCLTHTKAAAA 76
               +L LT T+  AA
Sbjct: 77 PRQPRVLVLTPTRELAA 93


>gi|25028058|ref|NP_738112.1| hypothetical protein CE1502 [Corynebacterium efficiens YS-314]
 gi|23493342|dbj|BAC18312.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 781

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + ++++         V    G+GKT + + RV  LL
Sbjct: 230 QREQDEIIRDSTRGVMVVQGGPGTGKTAVALHRVAYLL 267


>gi|307260839|ref|ZP_07542525.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869406|gb|EFN01197.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 1299

 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLC 67
           DL    + E++L         V A   GSGKT  L +  L L      L+ +  P  L  
Sbjct: 85  DLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRLAA 144

Query: 68  LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            +     A E+   +   +      +D++    + K+       +++   R+L
Sbjct: 145 RSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILLAEIQNDRYL 197


>gi|294649116|ref|ZP_06726558.1| exodeoxyribonuclease V alpha subunit [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824999|gb|EFF83760.1| exodeoxyribonuclease V alpha subunit [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 601

 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            ++   G+GKT+ L  R++  L        +     T  AA  M   +         ++ 
Sbjct: 163 IITGGPGTGKTYTLA-RIIAALNQMIPDIRIAMAAPTGKAAQRMQEALQNSFNDPKLIAS 221

Query: 95  EILSAEITKIQGKKPNK 111
            +++ E+     +  ++
Sbjct: 222 GLVTDELRNQSTQTLHR 238


>gi|282865176|ref|ZP_06274229.1| Superfamily I DNA and RNA helicase-like protein [Streptomyces sp.
           ACTE]
 gi|282560099|gb|EFB65648.1| Superfamily I DNA and RNA helicase-like protein [Streptomyces sp.
           ACTE]
          Length = 792

 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 8   QEHSETI-DLISQTKSEQ-LLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH--P 62
           Q  S T+ D+++  ++EQ L+   P  S   VS   G+GKT + + R   LL  +     
Sbjct: 209 QARSHTMRDIVASIQAEQDLVIRAPAASVTEVSGGPGTGKTAVALHRAAYLLYQDRRRYA 268

Query: 63  STLLCL 68
             +L +
Sbjct: 269 GGILVV 274


>gi|242348083|ref|YP_002995644.1| hypothetical protein pRA1_0146 [Aeromonas hydrophila]
 gi|224831902|gb|ACN67033.1| conserved hypothetical protein [Aeromonas hydrophila]
          Length = 503

 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRL 55
          L   T  + L+         V A AG+GKT  LV+        R+L L
Sbjct: 4  LPRDTPEQSLITQYKGSRLVVKAYAGTGKTTTLVKYAHNNLDSRILYL 51


>gi|227530104|ref|ZP_03960153.1| DNA helicase [Lactobacillus vaginalis ATCC 49540]
 gi|227349986|gb|EEJ40277.1| DNA helicase [Lactobacillus vaginalis ATCC 49540]
          Length = 775

 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL 56
           +++  +  D       V   AGSGKT  ++QRV  LL
Sbjct: 217 RTQNEIIRDTKDDLLFVQGAAGSGKTAAVLQRVAWLL 253


>gi|154501019|ref|ZP_02039057.1| hypothetical protein BACCAP_04706 [Bacteroides capillosus ATCC
           29799]
 gi|150270043|gb|EDM97562.1| hypothetical protein BACCAP_04706 [Bacteroides capillosus ATCC
           29799]
          Length = 512

 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 5   NSFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           ++ Q+   + +L + T  +Q         R + +   AG+GKT  LV+    L+     P
Sbjct: 95  SALQDMPASTELTTLTGEQQSAIRMVFGHRLSLILGGAGTGKT-TLVR---GLIAQ--AP 148

Query: 63  ST----LLCLTHTKAAAAEMSHR 81
                 +LC   T  AA  ++ R
Sbjct: 149 HRLSSCILCAP-TGKAARNLTER 170


>gi|71893920|ref|YP_279366.1| hypothetical protein MHJ_0571 [Mycoplasma hyopneumoniae J]
          Length = 629

 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 20 TKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAA 76
          T+ +Q +   +    +  V A  GSGKT +     +++L         +L LT+ +    
Sbjct: 26 TEEQQNVVNLALKGENILVDACIGSGKTTV-----IQVLCDKFPIDKRILYLTYNRLLKV 80

Query: 77 EMSHRVLEI 85
          E  +++   
Sbjct: 81 EAKNKIKNK 89


>gi|68474162|ref|XP_718790.1| hypothetical protein CaO19.6199 [Candida albicans SC5314]
 gi|68474333|ref|XP_718706.1| hypothetical protein CaO19.13579 [Candida albicans SC5314]
 gi|46440489|gb|EAK99794.1| hypothetical protein CaO19.13579 [Candida albicans SC5314]
 gi|46440578|gb|EAK99882.1| hypothetical protein CaO19.6199 [Candida albicans SC5314]
          Length = 719

 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 14/119 (11%)

Query: 15  DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCL 68
           D ++ ++ + +  A + +    +    G+GKT+ L++ + +L           PS +   
Sbjct: 220 DKLNASQRQAIDFAINDSNITIIHGPPGTGKTYTLIELIQQLTSKGEKVLVCGPSNISVD 279

Query: 69  THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127
           T        +  R+ +       +     +  + K           +  R ++  IL  
Sbjct: 280 T--------ILERLGDKYEPMKLIRIGHPARLLMKNLQHSLEILSKTYGRDIINEILND 330


>gi|302560389|ref|ZP_07312731.1| I DNA or RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302478007|gb|EFL41100.1| I DNA or RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 774

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQ-LLASDPTRSA-WVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ L+   P  S  +V    G+GKT + + R   LL
Sbjct: 233 DIVASIQAEQDLVIRAPAASVTYVEGGPGTGKTAVALHRAAYLL 276


>gi|255325145|ref|ZP_05366251.1| ATP-dependent helicase HrpA [Corynebacterium tuberculostearicum
           SK141]
 gi|255297710|gb|EET77021.1| ATP-dependent helicase HrpA [Corynebacterium tuberculostearicum
           SK141]
          Length = 1295

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 15  DLISQTKSEQLLASDPTRS-AWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLL 66
           D +  T  +  +A     +   + A   GSGKT  + +  L L       + +  P  + 
Sbjct: 68  DALPVTARKDDIAEAIRDNQVVIIAGETGSGKTTQIPKICLELGRGRRGFIGHTQPRRIA 127

Query: 67  CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
             T  +  A+E+  ++ E +       D +      K+       ++M + R L
Sbjct: 128 ARTVAERIASELDQKIGESVGYAIRFDDRVSETTAVKLMTDGILLAEMQRDRFL 181


>gi|182436981|ref|YP_001824700.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465497|dbj|BAG20017.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 700

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  + EQ          +  V    G+GKT + + RV  LL
Sbjct: 192 DIVATIQPEQDEIVRSGLGGTICVQGGPGTGKTAVGLHRVAYLL 235


>gi|126740491|ref|ZP_01756178.1| helicase, ATP-dependent, putative [Roseobacter sp. SK209-2-6]
 gi|126718292|gb|EBA15007.1| helicase, ATP-dependent, putative [Roseobacter sp. SK209-2-6]
          Length = 511

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 41/165 (24%)

Query: 40  AGSGKTHILVQRVLRLLLANAHP-------------STLLCLTHTKAAAAEMSHR----- 81
           AGSGKT +L +    L  A                  +L  L  T  AA+ +  R     
Sbjct: 51  AGSGKTLLLAELYKALEQAGVEVVSGDYESRKKTGRRSLAILAPTNKAASVLRLRGVPAT 110

Query: 82  -VLEIITAWSHLSDEILSAEITKIQGKKPN-----KSDMSKARHLLITILETPGGLKVQT 135
            +  I+    +  +    AE     G++P         +++A          PG L    
Sbjct: 111 TIHRILYTPVYDPEYERIAEWLTGNGEEPEIEGVTPEALARAHAFYEVNKSIPGALA--- 167

Query: 136 IHAFCEAI----------MQQFPLEANITSHFAIADEEQSKKLIE 170
                  +           +  PL+       ++ D+ Q + L E
Sbjct: 168 ----AAGLRGSDFITGWKRRDDPLDIGFIDEASMLDDRQFEDLKE 208


>gi|10954837|ref|NP_053257.1| hypothetical protein pTi-SAKURA_p018 [Agrobacterium tumefaciens]
 gi|159161957|ref|NP_396558.2| conjugal transfer protein [Agrobacterium tumefaciens str. C58]
 gi|3766175|gb|AAC82628.1| TrbB [Agrobacterium tumefaciens str. C58]
 gi|6498190|dbj|BAA87642.1| tiorf17 [Agrobacterium tumefaciens]
 gi|159141749|gb|AAK90999.2| conjugal transfer protein [Agrobacterium tumefaciens str. C58]
          Length = 323

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 25  LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84
             A     +  +S   GSGKT  L   V+  ++ANA    ++ L  T    AE+     E
Sbjct: 138 RSAIASRMNIVISGGTGSGKT-TLANAVIAEIVANAPDDRIVILEDT----AEIQC-AAE 191

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHA 138
              A        ++  +      +P++         A   L+    T     V TIH+
Sbjct: 192 NAVALHTSDTIDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHS 249


>gi|145224378|ref|YP_001135056.1| putative helicase [Mycobacterium gilvum PYR-GCK]
 gi|145216864|gb|ABP46268.1| putative helicase [Mycobacterium gilvum PYR-GCK]
          Length = 735

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ      D      +    G+GKT + + RV  LL
Sbjct: 186 DIVATIQAEQDAIIRLDHPGVLVIEGGPGTGKTVVALHRVAYLL 229


>gi|300790781|ref|YP_003771072.1| helicase [Amycolatopsis mediterranei U32]
 gi|299800295|gb|ADJ50670.1| putative helicase [Amycolatopsis mediterranei U32]
          Length = 734

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ        +    V    G+GKT + + RV  LL
Sbjct: 171 DIVATIQAEQDEIIRLGHAGVLVVEGGPGTGKTAVALHRVAYLL 214


>gi|284161655|ref|YP_003400278.1| circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631]
 gi|284011652|gb|ADB57605.1| putative circadian clock protein, KaiC [Archaeoglobus profundus DSM
           5631]
          Length = 471

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P RS  +    GSGKT       L  L+    +   +L +T       E S ++ E   A
Sbjct: 22  PKRSYLIRGGPGSGKTTF----CLHFLIEGVKNNENVLFITF-----GEPSEKIKENAKA 72

Query: 89  WSHLSDEILSAEIT 102
                + I+  ++ 
Sbjct: 73  IGLSPEGIVFLDLA 86


>gi|281343230|gb|EFB18814.1| hypothetical protein PANDA_015268 [Ailuropoda melanoleuca]
          Length = 2670

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 28  SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
           + P     +    G+GKT+ L   +  L +     + +L  THT +AA
Sbjct: 534 TRPIAPLLIYGPFGTGKTYTLA--MASLEVIRQPHTRVLICTHTNSAA 579


>gi|257869185|ref|ZP_05648838.1| DNA helicase [Enterococcus gallinarum EG2]
 gi|257803349|gb|EEV32171.1| DNA helicase [Enterococcus gallinarum EG2]
          Length = 754

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59
           Q    Q++    ++   +   AGSGKT  L+QRV  LL  N
Sbjct: 206 QKAQNQIIRDTTSKFMLIEGIAGSGKTSALLQRVAFLLYRN 246


>gi|189184802|ref|YP_001938587.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181573|dbj|BAG41353.1| putative conjugative transfer protein TraA [Orientia tsutsugamushi
           str. Ikeda]
          Length = 363

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 2   IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSAN--------AGSGKTHILVQRVL 53
           +Y+N+       I+ ++    EQ  A    R   +S +        AG+GK+++L++   
Sbjct: 89  VYYNNIYNLKSDIEGLANVSEEQKQAL---RHILLSTSGVRVLRGRAGTGKSYVLIK--A 143

Query: 54  RLLLANAHPSTLLCLTHTKAAAAEMSHR 81
             L  N     ++ L  T  A +E+  +
Sbjct: 144 HKLATNRG-QKVIGLAPTHKAVSELRSK 170


>gi|144227702|gb|AAZ44655.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
          Length = 621

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 20 TKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAA 76
          T+ +Q +   +    +  V A  GSGKT +     +++L         +L LT+ +    
Sbjct: 18 TEEQQNVVNLALKGENILVDACIGSGKTTV-----IQVLCDKFPIDKRILYLTYNRLLKV 72

Query: 77 EMSHRVLEI 85
          E  +++   
Sbjct: 73 EAKNKIKNK 81


>gi|320591247|gb|EFX03686.1| DNA-binding protein smubp-2 [Grosmannia clavigera kw1407]
          Length = 737

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 28/137 (20%)

Query: 8   QEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---- 61
           ++    ID          +  A      A +    G+GKTH LV+ VL+L+         
Sbjct: 216 EDAIRWIDGSLDASQRAAVRFALAAPEVALIHGPPGTGKTHALVELVLQLVGRGQRVLVC 275

Query: 62  -PSTLLCLTHTKAAAAEMSHRVL-------------EIITAWSHLSDEILSAEITKIQGK 107
            PS +        A   +  R+               ++ + +  + ++L+         
Sbjct: 276 GPSNI--------AVDNLVERLGPHGVPMVRLGHPARLLPSVAGYALDVLTQTSEAGAIV 327

Query: 108 KPNKSDMSKARHLLITI 124
           +  ++DM + +  L  +
Sbjct: 328 RDVRADMDRQQDELRQL 344


>gi|325680370|ref|ZP_08159928.1| hypothetical protein CUS_4838 [Ruminococcus albus 8]
 gi|324107963|gb|EGC02221.1| hypothetical protein CUS_4838 [Ruminococcus albus 8]
          Length = 652

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 17  ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           +S  + E +  +   R+  V A  GSGKT       +++L        +L LT+
Sbjct: 57  LSDEQQEFVQLAKSGRNILVDACIGSGKTTA-----IQVLCNEMTDRKILYLTY 105


>gi|156936986|ref|YP_001434782.1| DEAD/DEAH box helicase domain-containing protein [Ignicoccus
           hospitalis KIN4/I]
 gi|156565970|gb|ABU81375.1| DEAD/DEAH box helicase domain protein [Ignicoccus hospitalis
           KIN4/I]
          Length = 943

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 19  QTKSEQLLASDP---TRSAWVSANAGSGKT-HILVQRVLRLLLANAHPSTLLCLTHTKAA 74
                Q  A  P    ++  + A  G GKT   ++    +++     P ++L +T  K+ 
Sbjct: 26  DLTEVQKKAFKPITEGKNVLIVAPTGYGKTEAAMLPIFAKMIEERPEPLSVLYITPLKSL 85

Query: 75  AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133
             ++ +R+            E L   + +  G         + +     +L TP G K+
Sbjct: 86  INDLKNRIEWW--------AERLGFVVARKHGDVGASERSLRLKRTPHILLTTPEGFKI 136


>gi|108798374|ref|YP_638571.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119867471|ref|YP_937423.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|108768793|gb|ABG07515.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119693560|gb|ABL90633.1| UvrD/REP helicase [Mycobacterium sp. KMS]
          Length = 1051

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 39 NAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
            G+GK+ +LV      + A   P ++L LT
Sbjct: 33 GPGTGKSTLLVDTAAAHIAAGVDPESVLLLT 63


>gi|329943344|ref|ZP_08292118.1| exodeoxyribonuclease V, alpha subunit [Chlamydophila psittaci
           Cal10]
 gi|313848493|emb|CBY17497.1| exodeoxyribonuclease V alpha chain [Chlamydophila psittaci RD1]
 gi|325506621|gb|ADZ18259.1| exodeoxyribonuclease V subunit alpha [Chlamydophila psittaci 6BC]
 gi|328814891|gb|EGF84881.1| exodeoxyribonuclease V, alpha subunit [Chlamydophila psittaci
           Cal10]
 gi|328915185|gb|AEB56018.1| exodeoxyribonuclease V, alpha subunit [Chlamydophila psittaci 6BC]
          Length = 504

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 44/115 (38%)

Query: 35  WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94
            +    G+GKT + VQ ++ L+        +  ++ T  A +                  
Sbjct: 154 LICGGPGTGKTFLAVQIIIALIKQYPKI-RIAIVSPTGKATS------------------ 194

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149
                                  RH+L     +   + +QTIH F    +Q+   
Sbjct: 195 ---------------------HIRHILSKHHISESSVTIQTIHRF----LQEHAY 224


>gi|312138958|ref|YP_004006294.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311888297|emb|CBH47609.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 739

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ      D      +    G+GKT + + RV  LL
Sbjct: 182 DIVATIQAEQDRIIRLDHDGVLVIEGGPGTGKTVVALHRVAYLL 225


>gi|297200624|ref|ZP_06918021.1| ATP/GTP binding protein [Streptomyces sviceus ATCC 29083]
 gi|297147687|gb|EDY53789.2| ATP/GTP binding protein [Streptomyces sviceus ATCC 29083]
          Length = 731

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 13/67 (19%)

Query: 15  DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-----LLC 67
           D+ +  + EQ  L+  D   S  V    G+GKT + + R   LL    HP       LL 
Sbjct: 184 DIAATIQPEQDDLVRGDLALSVCVQGAPGTGKTAVGLHRAAYLLY--THPQRMRRGGLLV 241

Query: 68  L----TH 70
           L    T 
Sbjct: 242 LGPNRTF 248


>gi|289664158|ref|ZP_06485739.1| type I restriction enzyme EcoKI subunit R [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 1183

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 18/142 (12%)

Query: 7   FQEHSETIDLISQTKSEQLLASDP----TRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
            QE    ++L    +       D     +R+  ++   G+GKT  ++  + RLL A    
Sbjct: 456 AQESMAYLNLRDYQQRAIQAVEDALASGSRNCLLAMATGTGKTRTMIGLIYRLLKAE-RF 514

Query: 63  STLLCL-------THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS 115
             +L L       T    A   M       +     L+       +   +     +  ++
Sbjct: 515 RRILFLVDRSALGT---QATETMQD---MQLEQNQTLAQIYNLDGLDDTRTADETRVQVA 568

Query: 116 KARHLLITILETPGGLKVQTIH 137
             + ++  I ++     + T  
Sbjct: 569 TVQAMVRRIFQSDDPPPIGTFD 590


>gi|262372228|ref|ZP_06065507.1| exonuclease V subunit alpha [Acinetobacter junii SH205]
 gi|262312253|gb|EEY93338.1| exonuclease V subunit alpha [Acinetobacter junii SH205]
          Length = 570

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH-TKAAAAEM 78
            +   L       + +++ +AG+GKT+ L Q ++ L          + +T  T  AA  M
Sbjct: 2   KQETALNILKAGENVFLTGSAGAGKTYTLNQYIMYLKARKVP----VAITASTGIAATHM 57

Query: 79  SHRVLEIITAWS--HLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125
           +      I  W+   + D +   ++ +++ +K  K  +  A+ L+I  +
Sbjct: 58  N---GMTIHTWAGIGIKDSLSDDDLKRMKERKYLKEHLENAQVLIIDEI 103


>gi|300709148|ref|XP_002996741.1| hypothetical protein NCER_100116 [Nosema ceranae BRL01]
 gi|239606064|gb|EEQ83070.1| hypothetical protein NCER_100116 [Nosema ceranae BRL01]
          Length = 618

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 31  TRSAWVSANAGSGKTHILVQRVLRLLLAN 59
            +S  +    G+GKT  +V+ +L+LL   
Sbjct: 240 NKSYKILGPPGTGKTRTIVEIILQLLNKG 268


>gi|195093377|ref|XP_001997719.1| GH23599 [Drosophila grimshawi]
 gi|193905728|gb|EDW04595.1| GH23599 [Drosophila grimshawi]
          Length = 845

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61
              +  ++  AG+GKT +LV+R+L  L +   
Sbjct: 369 RQGNVLLTGAAGTGKT-VLVERILEQLASQPD 399


>gi|308235564|ref|ZP_07666301.1| DNA or RNA helicase, Superfamily I family protein [Gardnerella
           vaginalis ATCC 14018]
 gi|311114347|ref|YP_003985568.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis ATCC
           14019]
 gi|310945841|gb|ADP38545.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis ATCC
           14019]
          Length = 758

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 12  ETIDLISQTKSEQ-LLASDP-TRSAWVSANAGSGKTHILVQRVLRLL 56
           +  D+++  ++EQ  +   P   +  V    G+GKT + + R   LL
Sbjct: 177 KMTDIVATIQAEQDRIIRAPLDHTIVVQGGPGTGKTAVALHRAAYLL 223


>gi|258652133|ref|YP_003201289.1| transcriptional regulator domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258555358|gb|ACV78300.1| transcriptional regulator domain protein [Nakamurella
          multipartita DSM 44233]
          Length = 990

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHIL 48
           E + L  +   EQLLA   +R   V A  GSGKT +L
Sbjct: 14 PEPVGLARRRLEEQLLAPSTSRLDLVVAPPGSGKTTLL 51


>gi|238063768|ref|ZP_04608477.1| ATP-dependent helicase hrpA [Micromonospora sp. ATCC 39149]
 gi|237885579|gb|EEP74407.1| ATP-dependent helicase hrpA [Micromonospora sp. ATCC 39149]
          Length = 1333

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRL------LLANAHPSTLLCLTHTKA 73
           + + L A+       + A   GSGKT  L +  L L      L+ +  P  L   T    
Sbjct: 89  RRDDLAATIRDHQVVIVAGETGSGKTTQLPKICLELGRGVHGLIGHTQPRRLAARTVADR 148

Query: 74  AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
            A E+   + +++      +D++    + K+       +++   R L
Sbjct: 149 IAEELGTELGDVVGYKVRFTDQVSDRSLVKLMTDGILLAELQTDRML 195


>gi|119434076|gb|ABL75141.1| putative regulatory protein [Arthrobacter sp. JS443]
          Length = 981

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 31 TRSAWVSANAGSGKTHILVQR-------VLRLLLANAH--PSTLLC 67
           R  WV+A AGSGKT  +VQ        +  L L      P  LL 
Sbjct: 12 NRVLWVAATAGSGKTTAVVQAATAWGGPIAWLTLDGTDAAPGRLLI 57


>gi|134044543|ref|YP_001101868.1| hypothetical protein YR71pYR1_0174 [Yersinia ruckeri]
 gi|133904906|gb|ABO40923.1| conserved hypothetical protein [Yersinia ruckeri]
          Length = 503

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRL 55
          L   T  + L+         V A AG+GKT  LV+        R+L L
Sbjct: 4  LPPDTPEQSLITQYKGPRLVVKAYAGTGKTTTLVKYAHNNLDSRILYL 51


>gi|170734862|ref|YP_001773976.1| type II secretion system protein E [Burkholderia cenocepacia MC0-3]
 gi|169820900|gb|ACA95481.1| type II secretion system protein E [Burkholderia cenocepacia MC0-3]
          Length = 454

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 28/146 (19%)

Query: 3   YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62
           YH+     +E +D +S+ K           +  VS   GSGKT +L       +L+   P
Sbjct: 206 YHSLTPPMAELLDALSRAK----------VNVLVSGGTGSGKTTLL------NILSGFIP 249

Query: 63  STLLCLTHTKAAAAEMSH----RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118
                +T   AA  ++      R+           +      +      +P++  + + R
Sbjct: 250 RNERIVTIEDAAELQLQQPHVLRLETRPPNIEGKGEITQRTLVRNALRMRPDRIILGEVR 309

Query: 119 HLLITILETPGGLKVQ------TIHA 138
                 L+    +         TIHA
Sbjct: 310 G--AEALDMLNAMNTGHEGSLATIHA 333


>gi|67903368|ref|XP_681940.1| hypothetical protein AN8671.2 [Aspergillus nidulans FGSC A4]
 gi|40740903|gb|EAA60093.1| hypothetical protein AN8671.2 [Aspergillus nidulans FGSC A4]
          Length = 2234

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 13   TIDLISQTKSEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69
             +D  +   ++      A D      +    GSGKT  +V  V  LL        ++   
Sbjct: 1286 LVDNYNVNPAQAKAIKSAMDNDAFTLIQGPPGSGKTKTIVALVGALLTNALKDQGIVI-- 1343

Query: 70   HTKAAAA 76
             T+  AA
Sbjct: 1344 -TRPTAA 1349


>gi|325673764|ref|ZP_08153455.1| DNA or RNA helicase [Rhodococcus equi ATCC 33707]
 gi|325555785|gb|EGD25456.1| DNA or RNA helicase [Rhodococcus equi ATCC 33707]
          Length = 730

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ      D      +    G+GKT + + RV  LL
Sbjct: 173 DIVATIQAEQDRIIRLDHDGVLVIEGGPGTGKTVVALHRVAYLL 216


>gi|296100250|ref|YP_003617167.1| hypothetical protein pDK1_p082 [Pseudomonas putida]
 gi|295443616|dbj|BAJ06495.1| conserved hypothetical protein [Pseudomonas putida]
          Length = 451

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 12  ETIDLISQTKSE-QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70
           +TI L +Q     +++ ++P  S  +   AG+GKTH +++R++  L ++  P   L L  
Sbjct: 151 KTISLSNQQSRTFRVIHAEPDESIHIQGLAGTGKTH-MIERLVDSL-SSCRP---LVLAF 205

Query: 71  TKAAAAEMS---HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK--------ARH 119
           T   A ++     R+           D         +   +P K   ++        A  
Sbjct: 206 T---AVQLQALMQRIGAANVRGMTFGDLANYVLERSVGYYRPGKRASARHQVTPEDIASR 262

Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           L    +      +V T    C  ++  F    ++
Sbjct: 263 LGFGSISRLSSAQVAT---ACARMVASFCNSTDL 293


>gi|258624145|ref|ZP_05719095.1| F-box only protein 18 [Vibrio mimicus VM603]
 gi|258583576|gb|EEW08375.1| F-box only protein 18 [Vibrio mimicus VM603]
          Length = 503

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQ--------RVLRL 55
          L   T  + L+         V A AG+GKT  LV+        R+L L
Sbjct: 4  LPPDTPEQSLITQYKGPRLVVKAYAGTGKTTTLVKYAHNNLDSRILYL 51


>gi|255086899|ref|XP_002509416.1| predicted protein [Micromonas sp. RCC299]
 gi|226524694|gb|ACO70674.1| predicted protein [Micromonas sp. RCC299]
          Length = 592

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 17  ISQTKSEQLLA----SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72
           +    ++QL      +      W+    G+GKT ++++ + R + +      +L    + 
Sbjct: 80  VDFDPAQQLAVRVALTKTAPVVWIQGPPGTGKTGVVIEIIRRAVASG---QRVLACAPSN 136

Query: 73  AAAAEMSHRVLEI 85
           AA   +  R+ ++
Sbjct: 137 AAVDNLVERLAKL 149


>gi|169630271|ref|YP_001703920.1| hypothetical protein MAB_3189c [Mycobacterium abscessus ATCC 19977]
 gi|169242238|emb|CAM63266.1| Conserved hypothetical protein (putative helicase) [Mycobacterium
           abscessus]
          Length = 753

 Score = 35.2 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 15  DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL 56
           D+++  ++EQ      D      +    G+GKT + + RV  LL
Sbjct: 186 DIVATIQAEQDRIIRLDHPGVLVIEGGPGTGKTVVALHRVAYLL 229


>gi|259505609|ref|ZP_05748511.1| superfamily I DNA or RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259166802|gb|EEW51356.1| superfamily I DNA or RNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 767

 Score = 35.2 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 19  QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56
           Q + ++++         V    G+GKT + + RV  LL
Sbjct: 216 QREQDEIIRDSTRGVMVVQGGPGTGKTAVALHRVAYLL 253


>gi|193217034|ref|YP_002000276.1| exodeoxyribonuclease V, alpha subunit [Mycoplasma arthritidis
           158L3-1]
 gi|193002357|gb|ACF07572.1| exodeoxyribonuclease V, alpha subunit [Mycoplasma arthritidis
           158L3-1]
          Length = 732

 Score = 35.2 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 20  TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75
            + E + ++   +   ++ + G+GKT ++  R++  LL       +  +T T  A 
Sbjct: 330 LQIEAINSALNEKMVLITGSPGTGKT-LITNRIIEELLKYYPEDRMAIVTPTGRAT 384


>gi|168185578|ref|ZP_02620213.1| ATP-dependent DNA helicase [Clostridium botulinum C str. Eklund]
 gi|169296506|gb|EDS78639.1| ATP-dependent DNA helicase [Clostridium botulinum C str. Eklund]
          Length = 706

 Score = 35.2 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 21  KSEQLLASDPTRSAWVSAN-AGSGKTHILVQRVLRLL 56
           + +  +   P     V    AGSGKT I + RV  LL
Sbjct: 214 QEQDSIIRQPREKTLVVDGTAGSGKTTIALHRVAYLL 250


>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 458

 Score = 35.2 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 14/122 (11%)

Query: 16  LISQTKSEQLLASDPTRSAWVSANA--GSGKTHILVQRVLRLLLANAHPSTL----LCLT 69
            +S T  + L   +  +   + A+A  G+GKT   +  ++ LL A   P       L LT
Sbjct: 44  YLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIELLRAEDKPKRYQVHSLVLT 103

Query: 70  HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129
            T+  AA         + A +    + L+     + G    +  + + +  +  ++ TPG
Sbjct: 104 PTRELAA--------QVEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQGGVDILVATPG 155

Query: 130 GL 131
            L
Sbjct: 156 RL 157


>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
          mendocina NK-01]
 gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
          mendocina NK-01]
          Length = 632

 Score = 35.2 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 6  SFQEHSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63
          +     E+      T  +Q    A    R   V+A  G+GKT      +L  L    HP 
Sbjct: 11 ALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPILERLFPAGHPD 70

Query: 64 ----------TLLCLTHTKAAAA 76
                     +L LT T+  AA
Sbjct: 71 REQRHGPKQPRVLVLTPTRELAA 93


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.313    0.152    0.459 

Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,490,772,821
Number of Sequences: 13984884
Number of extensions: 196602855
Number of successful extensions: 856488
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 9975
Number of HSP's successfully gapped in prelim test: 7002
Number of HSP's that attempted gapping in prelim test: 826612
Number of HSP's gapped (non-prelim): 24627
length of query: 242
length of database: 4,792,584,752
effective HSP length: 135
effective length of query: 107
effective length of database: 2,904,625,412
effective search space: 310794919084
effective search space used: 310794919084
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 80 (35.2 bits)